HHsearch alignment for GI: 254780567 and conserved domain: PRK10365
>PRK10365 transcriptional regulatory protein ZraR; Provisional.
Probab=98.54 E-value=2.8e-06 Score=58.52 Aligned_cols=187 Identities=15% Similarity=0.158 Sum_probs=113.0
Q ss_pred EECCCHHH--HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC-----CCHHHHHHH--HHHH--H--------
Q ss_conf 65361899--999998510167884999878777868899999986276-----201356764--4454--6--------
Q gi|254780567|r 44 LVHSAIEQ--AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKS--LDSI--L-------- 104 (246)
Q Consensus 44 iv~~~N~~--A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~-----~~~~~~~~~--~~~~--~-------- 104 (246)
T Consensus 141 liG~S~am~~v~~~i~~~A~-s~~pVLI~GE~GTGK~~~Ar~IH~~S~r~~~pfv~vnC~~l~~~l~eseLFG~~~gaft 219 (441)
T PRK10365 141 MVGKSPAMQHLLSEIALVAP-SEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFT 219 (441)
T ss_pred CEECCHHHHHHHHHHHHHHC-CCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCCC
T ss_conf 66689999999999999848-89948998999810999999999657877898079878989845558986177556878
Q ss_pred -----------HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH----------CCCCCEEEEECCCCCCH---HHHHHHHH
Q ss_conf -----------666665334332100376-103354555431----------12342156403543200---22345667
Q gi|254780567|r 105 -----------IDTRKPVLLEDIDLLDFN-DTQLFHIINSIH----------QYDSSLLMTARTFPVSW---GVCLPDLC 159 (246)
Q Consensus 105 -----------~~~~~~i~iddi~~~~~~-ee~lf~l~n~~~----------~~~~~iilts~~~p~~~---~~~l~DL~ 159 (246)
T Consensus 220 ga~~~~~g~~~~A~gGTLfLdeI~~l~~~~Q~kLl~~l~~~~~~~~g~~~~~~~d~RiIaat~~~l~~~v~~g~Fr~dLy 299 (441)
T PRK10365 220 GADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 (441)
T ss_pred CCCCCCCCCEEECCCCEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEEECCCCCHHHHHHCCCCHHHHH
T ss_conf 96534689877889982550231529999999999877752100058873441363799837889999988198258999
Q ss_pred HHHHHCCEEEECCCCH--HHHH----HHHHHHHHHCCC---CCCHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 8852122245078897--8999----999998666289---798899999994-06679899999999999999984778
Q gi|254780567|r 160 SRLKAATVVKISLPDD--DFLE----KVIVKMFADRQI---FIDKKLAAYIVQ-RMERSLVFAEKLVDKMDNLALSRGMG 229 (246)
Q Consensus 160 SRl~~g~~~~I~~pdd--e~~~----~il~k~~~~r~i---~l~~~v~~yl~~-r~~Rs~~~l~~~l~~Ld~~sl~~kr~ 229 (246)
T Consensus 300 ~rL~~-~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvREL~n~iera~--~~~~~~~ 376 (441)
T PRK10365 300 YRLNV-VAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAV--VLLTGEY 376 (441)
T ss_pred HHHCC-HHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHH--HHCCCCC
T ss_conf 88601-11378260006200999999999999998499988889999999970999989999999999999--9578986
Q ss_pred CCHHH
Q ss_conf 78899
Q gi|254780567|r 230 ITRSL 234 (246)
Q Consensus 230 ITi~l 234 (246)
T Consensus 377 i~~~~ 381 (441)
T PRK10365 377 ISERE 381 (441)
T ss_pred CCHHH
T ss_conf 88465