HHsearch alignment for GI: 254780567 and conserved domain: PRK11608
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional.
Probab=98.59 E-value=1.5e-06 Score=60.27 Aligned_cols=176 Identities=15% Similarity=0.180 Sum_probs=106.9
Q ss_pred CEEECCCHHH--HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC-----CCHHHHHHHH--HHHH--------
Q ss_conf 4165361899--999998510167884999878777868899999986276-----2013567644--4546--------
Q gi|254780567|r 42 DLLVHSAIEQ--AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSL--DSIL-------- 104 (246)
Q Consensus 42 nFiv~~~N~~--A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~-----~~~~~~~~~~--~~~~-------- 104 (246)
T Consensus 6 ~~liG~S~~m~~v~~~~~~~A~-~~~pVLI~GE~GtGK~~~Ar~IH~~S~r~~~pfi~v~C~~l~~~~~e~~LFG~~~g~ 84 (325)
T PRK11608 6 DNLLGEANSFLEVLEQVSHLAP-LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGA 84 (325)
T ss_pred CCCEECCHHHHHHHHHHHHHHC-CCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCC
T ss_conf 9985899999999999999968-899989889898379999999996588679997788779899778899872775567
Q ss_pred -------------HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH----------CCCCCEEEEECCCCCCH---HHHHHH
Q ss_conf -------------666665334332100376-103354555431----------12342156403543200---223456
Q gi|254780567|r 105 -------------IDTRKPVLLEDIDLLDFN-DTQLFHIINSIH----------QYDSSLLMTARTFPVSW---GVCLPD 157 (246)
Q Consensus 105 -------------~~~~~~i~iddi~~~~~~-ee~lf~l~n~~~----------~~~~~iilts~~~p~~~---~~~l~D 157 (246)
T Consensus 85 ~~~~~~~~~g~le~a~gGTL~L~eI~~l~~~~Q~~Ll~~l~~~~~~r~g~~~~~~~~~RiIa~t~~~l~~lv~~g~fr~d 164 (325)
T PRK11608 85 FTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRAD 164 (325)
T ss_pred CCCCCCCCCCHHHCCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEECCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHH
T ss_conf 67753246873435689869973745479999999999986490885799876656468871332208999983956799
Q ss_pred HHHHHHHCCEEEECCCCH--HHHHHH----HHHHHHHCCCC----CCHHHHHHHHH-CCCCCHHHHHHHHHHH
Q ss_conf 678852122245078897--899999----99986662897----98899999994-0667989999999999
Q gi|254780567|r 158 LCSRLKAATVVKISLPDD--DFLEKV----IVKMFADRQIF----IDKKLAAYIVQ-RMERSLVFAEKLVDKM 219 (246)
Q Consensus 158 L~SRl~~g~~~~I~~pdd--e~~~~i----l~k~~~~r~i~----l~~~v~~yl~~-r~~Rs~~~l~~~l~~L 219 (246)
T Consensus 165 Ly~rL~-~~~I~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrEL~n~iera 236 (325)
T PRK11608 165 LLDRLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGNIRELKNVVERS 236 (325)
T ss_pred HHHHHH-HHHCCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 985653-011158684547101999999999999998299988888999999996199996599999999999