HHsearch alignment for GI: 254780567 and conserved domain: PRK12323
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional.
Probab=99.08 E-value=7.4e-09 Score=74.39 Aligned_cols=193 Identities=13% Similarity=0.127 Sum_probs=121.8
Q ss_pred CCCCCCCCCEEECCCHHHHHHHHHH-HHCCCC-CEEEEECCCCCCHHHHHHHHHHHHCCCCHH---------------HH
Q ss_conf 7766884541653618999999985-101678-849998787778688999999862762013---------------56
Q gi|254780567|r 34 RCLGISRDDLLVHSAIEQAVRLIDS-WPSWPS-RVVILVGPSGSGKSCLANIWSDKSRSTRFS---------------NI 96 (246)
Q Consensus 34 ~~~~~~~dnFiv~~~N~~A~~~i~~-~~~~~~-~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~---------------~~ 96 (246)
T Consensus 10 ~RP~-~F~~~v-GQ--~~v~~~l~na~~~~r~~haylf~G~rGvGKTt~ari~Ak~lnc~~~~~~~g~~~~pcg~C~~C~ 85 (721)
T PRK12323 10 WRPR-DFTTLV-GQ--EHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGPDGEGGITAQPCGQCRACT 85 (721)
T ss_pred HCCC-CHHHHC-CC--HHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 0798-665532-85--9999999999971997544750279988898999999999768998667898788787765468
Q ss_pred HHH------H-------------HHH---------HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCC-EEEEECCC
Q ss_conf 764------4-------------454---------666666533433210037610335455543112342-15640354
Q gi|254780567|r 97 AKS------L-------------DSI---------LIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSS-LLMTARTF 147 (246)
Q Consensus 97 ~~~------~-------------~~~---------~~~~~~~i~iddi~~~~~~ee~lf~l~n~~~~~~~~-iilts~~~ 147 (246)
T Consensus 86 ~i~~g~~~d~~EiDaas~~~v~~~r~l~~~~~y~P~~~~~KvyiiDevhmls~--~afnalLKtlEePP~hv~FilaTT~ 163 (721)
T PRK12323 86 EIDAGRFVDYIEMDAASNRGVDEMAQLLDQAVYAPTAGRFKVYMIDEVHMLTN--HAFNAMLKTLEEPPPHVKFILATTD 163 (721)
T ss_pred HHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCH--HHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf 77568987647743676788899999998545588766446999854000589--9999999840179755389994386
Q ss_pred CCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 32002234566788521222450788978999999998666289798899999994066798999999999999999847
Q gi|254780567|r 148 PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 (246)
Q Consensus 148 p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~k 227 (246)
T Consensus 164 ~~Kip------~TilSRc~~f~~~~~~~~~i~~~l~~i~~~E~i~~~~~al~~ia~~a~Gs~RDalslldQa--ia~-~~ 234 (721)
T PRK12323 164 PQKIP------VTVLSRCLQFNLKQMPPGHIVSHLDAILGQEGIGHEGNALRLLAQAAHGSMRDALSLTDQA--IAY-SA 234 (721)
T ss_pred HHHCC------HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH--HHH-CC
T ss_conf 34485------8898776542347899999999999999983997799999999997589647688899999--986-58
Q ss_pred CCCCHHHHHHHHHH
Q ss_conf 78788999999986
Q gi|254780567|r 228 MGITRSLAAEVLKE 241 (246)
Q Consensus 228 r~ITi~lvk~vL~~ 241 (246)
T Consensus 235 g~~~~~~v~~mlg~ 248 (721)
T PRK12323 235 GNVSEEAVRGMLGA 248 (721)
T ss_pred CCCCHHHHHHHHCC
T ss_conf 96269999998688