HHsearch alignment for GI: 254780567 and conserved domain: PRK12377
>PRK12377 putative replication protein; Provisional.
Probab=99.33 E-value=7.3e-12 Score=92.88 Aligned_cols=144 Identities=14% Similarity=0.048 Sum_probs=95.1
Q ss_pred CCCCCC---CCCCCCEEECC-CHHHHHHH----HHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC-----CCHHHHH
Q ss_conf 888776---68845416536-18999999----98510167884999878777868899999986276-----2013567
Q gi|254780567|r 31 SFPRCL---GISRDDLLVHS-AIEQAVRL----IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS-----TRFSNIA 97 (246)
Q Consensus 31 ~~~~~~---~~~~dnFiv~~-~N~~A~~~----i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~-----~~~~~~~ 97 (246)
T Consensus 61 rs~i~~~h~~~~f~ny~~~~~~~~~a~~~a~~~~~~F~~~-~~NlIf~G~pGtGKTHLA~AIg~~a~~~G~sVlF~t~~d 139 (248)
T PRK12377 61 RSGIQPLHRKCSFANYQVQNDGQRYALSQAKSIADELMTG-CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPD 139 (248)
T ss_pred CCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC-CCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHH
T ss_conf 0468537643863456457878999999999999987318-860899899998788999999999998799699988999
Q ss_pred HH-----------H---HHHHHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH-HH
Q ss_conf 64-----------4---45466666653343321003761---0335455543112342156403543200223456-67
Q gi|254780567|r 98 KS-----------L---DSILIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LC 159 (246)
Q Consensus 98 ~~-----------~---~~~~~~~~~~i~iddi~~~~~~e---e~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~D-L~ 159 (246)
T Consensus 140 Lv~~L~~a~~~g~~~~k~l~~l~~~dLLIIDElG~~~~s~~~~~llfqlI~~Ry~~~ks~IiTTNL~f~ew~~ilgdail 219 (248)
T PRK12377 140 VMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLNHEAMSTLLGERVM 219 (248)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHCCCEEEEHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 99999999984850999999973389898600057889867999999999999855798689758997799888759999
Q ss_pred HHH--HHCCEEEECCCCH
Q ss_conf 885--2122245078897
Q gi|254780567|r 160 SRL--KAATVVKISLPDD 175 (246)
Q Consensus 160 SRl--~~g~~~~I~~pdd 175 (246)
T Consensus 220 DRL~~h~~~~i~f~GeSY 237 (248)
T PRK12377 220 DRMTMNGGRWVNFNWESW 237 (248)
T ss_pred HHHHHCCCEEEEEECCCC
T ss_conf 999866934998617311