HHsearch alignment for GI: 254780567 and conserved domain: PRK12422
>PRK12422 chromosomal replication initiation protein; Provisional.
Probab=100.00 E-value=0 Score=318.13 Aligned_cols=212 Identities=15% Similarity=0.216 Sum_probs=179.8
Q ss_pred CCCCCCCCCCEEECCCHHHHHHHHHHHHCC-------CCCEEEEECCCCCCHHHHHHHHHHHHCC---CCHHHHHHHHHH
Q ss_conf 877668845416536189999999851016-------7884999878777868899999986276---201356764445
Q gi|254780567|r 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSW-------PSRVVILVGPSGSGKSCLANIWSDKSRS---TRFSNIAKSLDS 102 (246)
Q Consensus 33 ~~~~~~~~dnFiv~~~N~~A~~~i~~~~~~-------~~~~l~i~G~~GsGKTHLl~a~~~~~~~---~~~~~~~~~~~~ 102 (246)
T Consensus 103 ~lNp~ytFd~FVvG~~N~lA~~aa~~va~~~~~~~g~~yNPLfIyG~~GlGKTHLL~AIgn~i~~~~~kV~Yvtae~F~~ 182 (455)
T PRK12422 103 DVDPEMTFANFLVTPENDLPFRILQEFAKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVSALRESGGKILYVSSELFTE 182 (455)
T ss_pred CCCCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECHHHHHH
T ss_conf 68977835583315860999999999983755358876787588789999789999999998537998699974999999
Q ss_pred H---------------HHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 4---------------6666665334332100376---103354555431123421564035432002234566788521
Q gi|254780567|r 103 I---------------LIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164 (246)
Q Consensus 103 ~---------------~~~~~~~i~iddi~~~~~~---ee~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~~ 164 (246)
T Consensus 183 ~~v~ai~~~~~~~Fr~~yr~~DvLLIDDIQfl~gK~~tqeEff~tfN~L~~~~KQIVitsDr~P~el~~l~~RL~SRf~~ 262 (455)
T PRK12422 183 HLVSAIRSGEMQRFRSFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSSYAPGDLKAMEERLISRFEW 262 (455)
T ss_pred HHHHHHHCCCHHHHHHHHHCCCEEEEEHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHC
T ss_conf 99999975889999999963887763147887284889999999999999859969996898957651268999988637
Q ss_pred CCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHH---HHHHHCCCCCHHHHHHHHHH
Q ss_conf 222450788978999999998666289798899999994066798999999999999---99984778788999999986
Q gi|254780567|r 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN---LALSRGMGITRSLAAEVLKE 241 (246)
Q Consensus 165 g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~---~sl~~kr~ITi~lvk~vL~~ 241 (246)
T Consensus 263 GL~v~I~~Pd~etr~~Il~~k~~~~~~~l~~ev~~~iA~~i~~niReLeGal~~l~~~~~~~~~~~~~i~~~~~~~~l~d 342 (455)
T PRK12422 263 GIAIPIHPLTREGLRSFLMRQAEQLSIRIEETALDFLIQALSSNVKTLLHALTLLAKRVAYKKLSHQLLYEDDIKALLHD 342 (455)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 61321689998999999999998718888446899999997551799999999999999987156883649999999998
Q ss_pred HHC
Q ss_conf 741
Q gi|254780567|r 242 TQQ 244 (246)
Q Consensus 242 ~~~ 244 (246)
T Consensus 343 ~~~ 345 (455)
T PRK12422 343 VLE 345 (455)
T ss_pred HHC
T ss_conf 742