HHsearch alignment for GI: 254780567 and conserved domain: PRK13833
>PRK13833 conjugal transfer protein TrbB; Provisional.
Probab=95.80 E-value=0.0089 Score=36.96 Aligned_cols=53 Identities=28% Similarity=0.266 Sum_probs=35.4
Q ss_pred CCCCCCCCEEECCC-HHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 76688454165361-8999999985101678849998787778688999999862
Q gi|254780567|r 35 CLGISRDDLLVHSA-IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS 88 (246)
Q Consensus 35 ~~~~~~dnFiv~~~-N~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~ 88 (246)
T Consensus 115 ~~~~tl~dlv~~g~~t~~~~~~L~~aV~-~r~nilVsGgTGSGKTTllnaL~~~i 168 (323)
T PRK13833 115 SRLIPLDDYVRSKVMTEAQASTIRSAIS-SRLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred CCCCCHHHHHHCCCCCHHHHHHHHHHHH-CCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9999999998769999999999999998-18968999177775689999999864