HHsearch alignment for GI: 254780567 and conserved domain: TIGR00382
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=95.88 E-value=0.0071 Score=37.56 Aligned_cols=193 Identities=16% Similarity=0.197 Sum_probs=98.7
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCHHH-----H-H---HHHH---HHHCC-----------------CCCEEEEECCCCCC
Q ss_conf 34155888776688454165361899-----9-9---9998---51016-----------------78849998787778
Q gi|254780567|r 26 EQLFFSFPRCLGISRDDLLVHSAIEQ-----A-V---RLID---SWPSW-----------------PSRVVILVGPSGSG 76 (246)
Q Consensus 26 ~Ql~l~~~~~~~~~~dnFiv~~~N~~-----A-~---~~i~---~~~~~-----------------~~~~l~i~G~~GsG 76 (246)
T Consensus 85 ~~~~lP~P~eik~~LD~YVIGQe~AKKVLsVAVYNHYKRl~~~~~n~~~d~~D~nvelehleeVEL~KSNILLiGPTGSG 164 (452)
T TIGR00382 85 ELSELPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNLKEKNKKSDNGDSNVELEHLEEVELSKSNILLIGPTGSG 164 (452)
T ss_pred HHHCCCCCHHHHHHHCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCC
T ss_conf 65247882799997213612310105254324112466653243045558840002354444433300662454688852
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHH----------------------HHHHHHHHHHHHHHHHCCCCC------------
Q ss_conf 6889999998627620135676444----------------------546666665334332100376------------
Q gi|254780567|r 77 KSCLANIWSDKSRSTRFSNIAKSLD----------------------SILIDTRKPVLLEDIDLLDFN------------ 122 (246)
Q Consensus 77 KTHLl~a~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~i~iddi~~~~~~------------ 122 (246)
T Consensus 165 KTLLAqTLA~~L~VPfAiADATtLTEAGYVGEDVENIL~~Llq~ad~DV~kA~kGIiYIDEIDKIaRkSEN~SITRDVSG 244 (452)
T TIGR00382 165 KTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKIARKSENPSITRDVSG 244 (452)
T ss_pred HHHHHHHHHHHCCCCEEECCHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHCCCEEEEECCCCHHHHCCCCEEEEEECC
T ss_conf 68999999987388742111110200664242288999999874145524527850898422310121577801122175
Q ss_pred ---CHHHH-------------------------------------------HHHHHHHCCCCCEEEEECCCCCCHHHHHH
Q ss_conf ---10335-------------------------------------------45554311234215640354320022345
Q gi|254780567|r 123 ---DTQLF-------------------------------------------HIINSIHQYDSSLLMTARTFPVSWGVCLP 156 (246)
Q Consensus 123 ---ee~lf-------------------------------------------~l~n~~~~~~~~iilts~~~p~~~~~~l~ 156 (246)
T Consensus 245 EGVQQALLKi~EGTvA~vPPqGGRKHP~~~~iqiDTs~ILFICGGAF~GL~~iI~~R~~~~~~iGF~~~~~~~~~~~~~~ 324 (452)
T TIGR00382 245 EGVQQALLKIIEGTVANVPPQGGRKHPQQEFIQIDTSNILFICGGAFVGLEKIIKKRTEKKSSIGFGAEVKKKSKEKSEE 324 (452)
T ss_pred CHHHHHHHHHHHCCEEEECCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 54999999876032343175448868865768864764001105434448999988745553335455210045787899
Q ss_pred HHHHH------HHHC----------CEEEECCCCHHHHHHHHHH-------HHH----HC--CCCCCHHHHHHHHHCCC-
Q ss_conf 66788------5212----------2245078897899999999-------866----62--89798899999994066-
Q gi|254780567|r 157 DLCSR------LKAA----------TVVKISLPDDDFLEKVIVK-------MFA----DR--QIFIDKKLAAYIVQRME- 206 (246)
Q Consensus 157 DL~SR------l~~g----------~~~~I~~pdde~~~~il~k-------~~~----~r--~i~l~~~v~~yl~~r~~- 206 (246)
T Consensus 325 ~~L~~v~~~DL~kFGLIPEfIGRLPV~a~L~~L~~eAL~~IL~~PkNAlvKQY~~lf~ld~VeL~F~~eAl~~IA~~A~~ 404 (452)
T TIGR00382 325 ELLRQVEPEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKLDNVELEFEEEALKAIAKKALE 404 (452)
T ss_pred HHHHHHCHHHHHHHCCCCCCCCCCCCEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 99975171112210555101105340202787887899998525444488999997164561134558889999999985
Q ss_pred --CCHHHHHHHHHH
Q ss_conf --798999999999
Q gi|254780567|r 207 --RSLVFAEKLVDK 218 (246)
Q Consensus 207 --Rs~~~l~~~l~~ 218 (246)
T Consensus 405 RkTGARGLRsI~E~ 418 (452)
T TIGR00382 405 RKTGARGLRSIVEG 418 (452)
T ss_pred CCCCCCHHHHHHHH
T ss_conf 07675157899999