HHsearch alignment for GI: 254780567 and conserved domain: TIGR00390
>TIGR00390 hslU heat shock protein HslVU, ATPase subunit HslU; InterPro: IPR004491 This family of proteins represent HslU, a bacterial clpX homolog, which is an ATPase and chaperone belonging to the AAA Clp/Hsp100 family and a component of the eubacterial proteasome. ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, ClpXP) complex in other eubacteria. Genes homologous to eubacterial HslV, IPR001353 from INTERPRO, (ClpQ,) and HslU (ClpY, ClpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa. They are expressed as precursors, with a propeptide that is removed to produce the active protease. The protease is probably located in the kinetoplast (mitochondrion). Phylogenetic analysis shows that HslV and HslU from trypanosomatids form a single clad with other eubacterial homologs . ; GO: 0005515 protein binding, 0005524 ATP binding, 0009377 HslUV protease activity, 0016887 ATPase activity, 0005737 cytoplasm, 0009376 HslUV protease complex.
Probab=96.53 E-value=0.0042 Score=38.98 Aligned_cols=197 Identities=13% Similarity=0.167 Sum_probs=98.1
Q ss_pred CCCCCEEECCCHH---HHHHHHHHHHCC-----------CCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH-
Q ss_conf 8845416536189---999999851016-----------7884999878777868899999986276201356764445-
Q gi|254780567|r 38 ISRDDLLVHSAIE---QAVRLIDSWPSW-----------PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS- 102 (246)
Q Consensus 38 ~~~dnFiv~~~N~---~A~~~i~~~~~~-----------~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~- 102 (246)
T Consensus 8 ~~LD~yIiGQ~~AKk~VAiALrNRyrR~~L~~~L~~EV~PKN-ILMiGpTGVGKTEIARRlAKL~~aPFiKVEAtKfTEV 86 (463)
T TIGR00390 8 AELDKYIIGQDEAKKAVAIALRNRYRRSQLEEELKDEVTPKN-ILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEV 86 (463)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-EEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEEEEC
T ss_conf 751442206366788999998866776128711135658743-0432788985447999999984489146664100110
Q ss_pred -----------HHH--HHHHHHHHHHHHCCCC-----CCHHHHH-HHHHHHCC----CCCEEEEECCCCCCH---HHHHH
Q ss_conf -----------466--6666533433210037-----6103354-55543112----342156403543200---22345
Q gi|254780567|r 103 -----------ILI--DTRKPVLLEDIDLLDF-----NDTQLFH-IINSIHQY----DSSLLMTARTFPVSW---GVCLP 156 (246)
Q Consensus 103 -----------~~~--~~~~~i~iddi~~~~~-----~ee~lf~-l~n~~~~~----~~~iilts~~~p~~~---~~~l~ 156 (246)
T Consensus 87 GYVGrdVeSmvRDL~~~aV~lV~~e~~~~~r~~aee~~~erI~~~L~pp~~n~sGvknPfe~f~~~~ePN~~~e~~~~~~ 166 (463)
T TIGR00390 87 GYVGRDVESMVRDLVDTAVKLVKEEKIEKVRDRAEEAAEERIVDKLLPPAKNQSGVKNPFEMFWGSEEPNEKDEEESSRE 166 (463)
T ss_pred CEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHEECCCCCCHHHHHHHHHH
T ss_conf 21424100367878999999999988998899999999889998728889887766672230005668740246899999
Q ss_pred HHHHHHHH--CCEEEECCCCHHHHHHHHHHHH--HHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 66788521--2224507889789999999986--6628979889999999406679899999999999999984778788
Q gi|254780567|r 157 DLCSRLKA--ATVVKISLPDDDFLEKVIVKMF--ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232 (246)
Q Consensus 157 DL~SRl~~--g~~~~I~~pdde~~~~il~k~~--~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~ITi 232 (246)
T Consensus 167 ~~~~klr~r~ahqlalGeLDd~~iei~v~~~~pf~~~e~~~pp~~e~~~--------~~l~~~l~~l~~-~~kkkr~l~i 237 (463)
T TIGR00390 167 ALRKKLRERMAHQLALGELDDKEIEIEVSAKSPFSGIEILAPPGMEEMT--------MNLQSLLQNLGP-DKKKKRKLKI 237 (463)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEECCCCCCHHHHH--------HHHHHHHHHHCC-CCCEECCCCH
T ss_conf 9999999987766303664671589986137871267505888556776--------789999862045-3200011456
Q ss_pred HHHHHHHHHHHC
Q ss_conf 999999986741
Q gi|254780567|r 233 SLAAEVLKETQQ 244 (246)
Q Consensus 233 ~lvk~vL~~~~~ 244 (246)
T Consensus 238 k~A~~~L~~Ee~ 249 (463)
T TIGR00390 238 KEAKKALIAEEA 249 (463)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999899988