HHsearch alignment for GI: 254780567 and conserved domain: TIGR01243
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=98.19 E-value=1.6e-05 Score=53.82 Aligned_cols=150 Identities=16% Similarity=0.260 Sum_probs=97.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHH------------HH----HHHHHHHHHHHHHHHCCCCC---C
Q ss_conf 78849998787778688999999862762013567644------------45----46666665334332100376---1
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL------------DS----ILIDTRKPVLLEDIDLLDFN---D 123 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~------------~~----~~~~~~~~i~iddi~~~~~~---e 123 (246)
T Consensus 574 PP~Gvll~GPPGtGktllakava~es~anfi~v~GPe~lskWvGese~~ir~if~~arq~aP~~~f~deidaiaP~rG~~ 653 (980)
T TIGR01243 574 PPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGAS 653 (980)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEECCCHHHHHHHCHHHHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCC
T ss_conf 99734874689861688888774014564677407312234403247999999998641287378730211105412442
Q ss_pred -----------HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCC
Q ss_conf -----------033545554311234215640354320022345667885212224507889789999999986662897
Q gi|254780567|r 124 -----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 (246)
Q Consensus 124 -----------e~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~ 192 (246)
T Consensus 654 ~~~~~vtd~~~nqll~e~dG~~~~~~vvvi~atnrPdi~d---PallrPGr~dr~i~vP~Pd~~ar~~ifk~h--t~~~~ 728 (980)
T TIGR01243 654 LDEKGVTDRIVNQLLTELDGLEELSDVVVIAATNRPDILD---PALLRPGRLDRLILVPAPDEEARLEIFKIH--TRSMP 728 (980)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCC---CCCCCCCCCCEEEEECCCCHHHHHHHHHHH--HCCCC
T ss_conf 1001026899999998640443436658986158874236---100488741216860598556767676553--11135
Q ss_pred CCHHH-HHHHHHCCCCCHHHHHHHHH
Q ss_conf 98899-99999406679899999999
Q gi|254780567|r 193 IDKKL-AAYIVQRMERSLVFAEKLVD 217 (246)
Q Consensus 193 l~~~v-~~yl~~r~~Rs~~~l~~~l~ 217 (246)
T Consensus 729 l~~dv~l~~la~~teGytGadi~a~~ 754 (980)
T TIGR01243 729 LAEDVDLEELAKKTEGYTGADIEAVV 754 (980)
T ss_pred CCCCCCHHHHHHHHCCCCCHHHHHHH
T ss_conf 30134389998651687632299999