HHsearch alignment for GI: 254780567 and conserved domain: TIGR01420
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=95.02 E-value=0.036 Score=33.25 Aligned_cols=37 Identities=24% Similarity=0.450 Sum_probs=27.3
Q ss_pred HHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 9851016788499987877786889999998627620
Q gi|254780567|r 56 IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTR 92 (246)
Q Consensus 56 i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~ 92 (246)
T Consensus 119 ~~~~a~~~~GLiLVTGPTGSGKSTTlAsmIDyIN~~~ 155 (350)
T TIGR01420 119 LRELAERPRGLILVTGPTGSGKSTTLASMIDYINKNK 155 (350)
T ss_pred HHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf 9999836699389876889867899999997874038