HHsearch alignment for GI: 254780567 and conserved domain: TIGR01448
>TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345 These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. .
Probab=96.10 E-value=0.0086 Score=37.05 Aligned_cols=160 Identities=16% Similarity=0.136 Sum_probs=89.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCC----HHHHHHH---------------------------------------
Q ss_conf 788499987877786889999998627620----1356764---------------------------------------
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTR----FSNIAKS--------------------------------------- 99 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~----~~~~~~~--------------------------------------- 99 (246)
T Consensus 364 ~~Kv~iLTGGPGTGKtT~t~~i~~~~~~~~gl~l~~~~~vndd~~v~LaAPTGrAAkRl~E~TG~~a~TIHRLlG~~~~~ 443 (769)
T TIGR01448 364 QDKVVILTGGPGTGKTTITKAIIELYEELKGLDLDKDDYVNDDLPVVLAAPTGRAAKRLAEVTGLEALTIHRLLGYGSDT 443 (769)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHCCCCCCCHHHHHHHHHCCCCCC
T ss_conf 09489985778886168999999999871687755312456776488737743788851100262123477863689888
Q ss_pred --HH--HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEECCC--CCCH-HHHHHHHHHHHHHCCEEEECC
Q ss_conf --44--5466666653343321003761033545554311234215640354--3200-223456678852122245078
Q gi|254780567|r 100 --LD--SILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTF--PVSW-GVCLPDLCSRLKAATVVKISL 172 (246)
Q Consensus 100 --~~--~~~~~~~~~i~iddi~~~~~~ee~lf~l~n~~~~~~~~iilts~~~--p~~~-~~~l~DL~SRl~~g~~~~I~~ 172 (246)
T Consensus 444 ~~~~k~~~~~~~~DL~IvDE~SM~---Dt~L~~~lL~a~P~~a~lllVGD~DQLPSV~pG~VL~DLi~s-~~iP~~~LT~ 519 (769)
T TIGR01448 444 KSENKNLEDPIDADLLIVDESSMV---DTWLASSLLAAVPDHARLLLVGDADQLPSVGPGQVLKDLIQS-KVIPVTRLTK 519 (769)
T ss_pred CCCCHHHCCCCCCCEEEEECCCHH---HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHC-CCCCEEECCC
T ss_conf 732110113478776998146218---899999998617977779888376888988644089999846-8866121211
Q ss_pred CCH-HHHHHHHHHHHHHCCCCCC-----HHHHHHHHHCCCC-----CHHHHHHHHHHHHHHHHHH
Q ss_conf 897-8999999998666289798-----8999999940667-----9899999999999999984
Q gi|254780567|r 173 PDD-DFLEKVIVKMFADRQIFID-----KKLAAYIVQRMER-----SLVFAEKLVDKMDNLALSR 226 (246)
Q Consensus 173 pdd-e~~~~il~k~~~~r~i~l~-----~~v~~yl~~r~~R-----s~~~l~~~l~~Ld~~sl~~ 226 (246)
T Consensus 520 vyRQ~~~S~Ii~~Ah~~~~G~~Pvlnss~~~~Df~~~~~~~s~~e~~~~~i~~~v~~~~~~a~~~ 584 (769)
T TIGR01448 520 VYRQAEGSSIITLAHKILQGEAPVLNSSSAKKDFKFLKLDRSEPEEAAKHIPLMVEKIVGAAKKK 584 (769)
T ss_pred EEEECCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 12411366467888987317887523244676677776400101066678999998877898717