HHsearch alignment for GI: 254780567 and conserved domain: TIGR02782
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB; InterPro: IPR014149 This entry represents TrbB, a protein, which is encoded in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer . TrbB is a homologue of the vir system VirB11 ATPase , and the Flp pilus system ATPase TadA ..
Probab=97.12 E-value=0.00052 Score=44.58 Aligned_cols=95 Identities=20% Similarity=0.215 Sum_probs=57.3
Q ss_pred CCCCCCCCEEECCCH-HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 766884541653618-99999998510167884999878777868899999986276-2013567644454666666533
Q gi|254780567|r 35 CLGISRDDLLVHSAI-EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS-TRFSNIAKSLDSILIDTRKPVL 112 (246)
Q Consensus 35 ~~~~~~dnFiv~~~N-~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~ 112 (246)
T Consensus 110 ~~vfTLDdYV~~gimtaaQ~d~l~~Av~a-r~NIlv~GGTGSGKTTLaNAlla~I~~l~~-------------P~dR~vI 175 (315)
T TIGR02782 110 VRVFTLDDYVEAGIMTAAQRDVLREAVAA-RKNILVVGGTGSGKTTLANALLAEIAKLND-------------PDDRVVI 175 (315)
T ss_pred CCCCCCHHHHHHCCCCHHHHHHHHHHHHH-CCCEEEECCCCCCHHHHHHHHHHHHHHCCC-------------CCCEEEE
T ss_conf 41047077764044557899999999971-298899814588579999999998852169-------------9961899
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHH
Q ss_conf 4332100376103354555431123421564035432002234
Q gi|254780567|r 113 LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 (246)
Q Consensus 113 iddi~~~~~~ee~lf~l~n~~~~~~~~iilts~~~p~~~~~~l 155 (246)
T Consensus 176 iEDT~El------------QC~A~N~V~lrT~d~~Gi~M~~LL 206 (315)
T TIGR02782 176 IEDTAEL------------QCAAENLVALRTSDDVGISMTRLL 206 (315)
T ss_pred EECCHHH------------HHCCCCEEEEECCCCCCCCHHHHH
T ss_conf 8547132------------013787068744898661478888