HHsearch alignment for GI: 254780567 and conserved domain: TIGR02903

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family; InterPro: IPR014252 This entry shows some relation to the widely distributed ATP-dependent protease La, also called Lon or LonA (IPR004815 from INTERPRO), but is more closely related to LonB (IPR014251 from INTERPRO), a LonA paralog found only in endospore-forming bacteria. Proteins in this entry are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ). They are restricted to a subset of endospore-forming species, and probably participate in the program of endospore formation. We propose the designation LonC..
Probab=98.91  E-value=3.6e-08  Score=70.19  Aligned_cols=195  Identities=18%  Similarity=0.223  Sum_probs=125.2

Q ss_pred             CCCCCCCCEEECCCHHHHHHHHHHHHCCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH----------
Q ss_conf             7668845416536189999999851016788-49998787778688999999862762013567644454----------
Q gi|254780567|r   35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSR-VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI----------  103 (246)
Q Consensus        35 ~~~~~~dnFiv~~~N~~A~~~i~~~~~~~~~-~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~~----------  103 (246)
T Consensus       151 P~~f~E---iVGQ--erAI~aLlaK~aSPfPQHiiLYGPPGVGKTTaARl~LEe~K~~~~tPF~~DA~FvEVDGtTLRWD  225 (616)
T TIGR02903       151 PRAFSE---IVGQ--ERAIKALLAKLASPFPQHIILYGPPGVGKTTAARLALEEAKKLKNTPFAEDAPFVEVDGTTLRWD  225 (616)
T ss_pred             CCCCCC---CCCH--HHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCC
T ss_conf             766764---3334--68999999763188866078557338847899999876213687447611378575157626677


Q ss_pred             ----------------HHHHH---------------------HHHHHHHHHCCC------------------------CC
Q ss_conf             ----------------66666---------------------653343321003------------------------76
Q gi|254780567|r  104 ----------------LIDTR---------------------KPVLLEDIDLLD------------------------FN  122 (246)
Q Consensus       104 ----------------~~~~~---------------------~~i~iddi~~~~------------------------~~  122 (246)
T Consensus       226 PREvTNPLLGSVHDPIYQGa~RDLAE~GvPEPk~GLVT~AHGGvLFIDEIGELD~lLQnKLLKVLEDKrV~F~SsYYDpd  305 (616)
T TIGR02903       226 PREVTNPLLGSVHDPIYQGARRDLAETGVPEPKLGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPD  305 (616)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf             41014776776257655676401104787989898710047756765021122278763244432264366532124875


Q ss_pred             CHHHHHHHHHHHCCCCC----EEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf             10335455543112342----15640354320022345667885212224507889789999999986662897988999
Q gi|254780567|r  123 DTQLFHIINSIHQYDSS----LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA  198 (246)
Q Consensus       123 ee~lf~l~n~~~~~~~~----iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~  198 (246)
T Consensus       306 D~NvPkYIK~lFe~GAPADFvLIGATTr~P~eIN---pALRSRCa---EvfFePL~p~dI~~Iv~~AA~klnv~L~~gV~  379 (616)
T TIGR02903       306 DENVPKYIKKLFEEGAPADFVLIGATTRDPEEIN---PALRSRCA---EVFFEPLTPEDIKEIVLNAAEKLNVKLAEGVE  379 (616)
T ss_pred             CCCCCHHHHHHHCCCCCCCEEEECCCCCCHHHCC---HHHHCCCC---EEECCCCCHHHHHHHHHHHHHHCCCCCCCCHH
T ss_conf             3786558888522688825687266158824405---12330143---13217988789999999988861770003648


Q ss_pred             HHHHHCCCCCHHHHHHHHHHHHHHHHHHC---------CCCCHHHHHHHHHH
Q ss_conf             99994066798999999999999999847---------78788999999986
Q gi|254780567|r  199 AYIVQRMERSLVFAEKLVDKMDNLALSRG---------MGITRSLAAEVLKE  241 (246)
Q Consensus       199 ~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~k---------r~ITi~lvk~vL~~  241 (246)
T Consensus       380 e~Ia~YT-ieGRkAvnILAD~Yg~~ly~~~~~~~~~d~~~I~~~dv~evv~~  430 (616)
T TIGR02903       380 ELIARYT-IEGRKAVNILADVYGYALYKKAEALKEEDKVTITADDVKEVVQI  430 (616)
T ss_pred             HHHHHCC-CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHH
T ss_conf             7872147-13112223465467676530455567777426618677767753