HHsearch alignment for GI: 254780567 and conserved domain: TIGR03345
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.92 E-value=5.6e-05 Score=50.51 Aligned_cols=160 Identities=15% Similarity=0.172 Sum_probs=91.5
Q ss_pred CCEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC---------CHHHHHH-------------
Q ss_conf 541653618999999985101678849998787778688999999862762---------0135676-------------
Q gi|254780567|r 41 DDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST---------RFSNIAK------------- 98 (246)
Q Consensus 41 dnFiv~~~N~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~---------~~~~~~~------------- 98 (246)
T Consensus 186 lDPvIGR-d~EI~r~iqIL~Rr~KNNPiLVGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~sLDlg~LvAGtkyRGeF 264 (852)
T TIGR03345 186 IDPVLGR-DDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEF 264 (852)
T ss_pred CCCCCCC-HHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHCCEEEEEEHHHHHHCCCCCCHH
T ss_conf 9988694-999999999998624799746579998799999999999976999867743856786788886403576359
Q ss_pred --HHHH--HHH-HHHH--HHHHHHHHCCCCC--CH---HHHHHHHHHHCCCCCEEEEECCCCCCH-HHHHHH--HHHHHH
Q ss_conf --4445--466-6666--5334332100376--10---335455543112342156403543200-223456--678852
Q gi|254780567|r 99 --SLDS--ILI-DTRK--PVLLEDIDLLDFN--DT---QLFHIINSIHQYDSSLLMTARTFPVSW-GVCLPD--LCSRLK 163 (246)
Q Consensus 99 --~~~~--~~~-~~~~--~i~iddi~~~~~~--ee---~lf~l~n~~~~~~~~iilts~~~p~~~-~~~l~D--L~SRl~ 163 (246)
T Consensus 265 EeRlk~ii~ei~~~~~~iILFIDEiHtlvGAG~~~G~~DaaNiLKPaLarGelr~IGAT-T~~EYrk~iEkD~AL~RRFq 343 (852)
T TIGR03345 265 ENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELRTIAAT-TWAEYKKYFEKDPALTRRFQ 343 (852)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEC-CHHHHHHHHHCCHHHHHHCC
T ss_conf 99999999999848997699963487752899888862278875178737873499835-78999888642688996247
Q ss_pred HCCEEEECCCCHHHHHHHHHHHHH----HCCCCCCHHHHHHHHHCC
Q ss_conf 122245078897899999999866----628979889999999406
Q gi|254780567|r 164 AATVVKISLPDDDFLEKVIVKMFA----DRQIFIDKKLAAYIVQRM 205 (246)
Q Consensus 164 ~g~~~~I~~pdde~~~~il~k~~~----~r~i~l~~~v~~yl~~r~ 205 (246)
T Consensus 344 ---~V~V~EPs~eeti~IL~glk~~yE~hH~V~i~d~Ai~aAv~LS 386 (852)
T TIGR03345 344 ---VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELS 386 (852)
T ss_pred ---CCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHH
T ss_conf ---5527999879999999987999855479687089999999998