HHsearch alignment for GI: 254780567 and conserved domain: TIGR03375
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=94.81 E-value=0.024 Score=34.29 Aligned_cols=50 Identities=22% Similarity=0.267 Sum_probs=32.2
Q ss_pred CCCCCCEEEC--CCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 6884541653--61899999998510167884999878777868899999986
Q gi|254780567|r 37 GISRDDLLVH--SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 37 ~~~~dnFiv~--~~N~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
T Consensus 463 ~i~~~~vsf~y~~~~~~vl~~vs-l~i~~Ge~vaIvG~sGsGKSTL~kll~Gl 514 (694)
T TIGR03375 463 EIEFRNVSFAYPGQETPALDNVS-LTIRPGEKVAIIGRIGSGKSTLLKLLLGL 514 (694)
T ss_pred EEEEEEEEEECCCCCCHHHCCHH-HEECCCCEEEEEECCCCCHHHHHHHHCCC
T ss_conf 49999999987988922213631-18879978999805898788999985567