HHsearch alignment for GI: 254780567 and conserved domain: cd00983
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.87 E-value=0.039 Score=33.02 Aligned_cols=95 Identities=18% Similarity=0.224 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHCCCC-CEEEEECCCCCCHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-CC
Q ss_conf 8999999985101678-8499987877786889999998627-----620135676444546666665334332100-37
Q gi|254780567|r 49 IEQAVRLIDSWPSWPS-RVVILVGPSGSGKSCLANIWSDKSR-----STRFSNIAKSLDSILIDTRKPVLLEDIDLL-DF 121 (246)
Q Consensus 49 N~~A~~~i~~~~~~~~-~~l~i~G~~GsGKTHLl~a~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~iddi~~~-~~ 121 (246)
T Consensus 39 Gs~~lD~alg~GGiP~GRivei~G~essGKTtlal~~ia~aQk~gg~~~~iDaE-~a~d~~~a~~l-GVD~~~l~~~qp~ 116 (325)
T cd00983 39 GSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAE-HALDPVYAKKL-GVDLDNLLISQPD 116 (325)
T ss_pred CCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHH-HCCCHHHHHHC-CCCHHHEEEECCC
T ss_conf 819999997589966880899988987779999999999987359839999625-42598999980-9984675896663
Q ss_pred CCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 610335455543112342156403
Q gi|254780567|r 122 NDTQLFHIINSIHQYDSSLLMTAR 145 (246)
Q Consensus 122 ~ee~lf~l~n~~~~~~~~iilts~ 145 (246)
T Consensus 117 ~~Eq~l~i~~~li~s~~~dliViD 140 (325)
T cd00983 117 TGEQALEIADSLVRSGAVDLIVVD 140 (325)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 899999999997515887679981