HHsearch alignment for GI: 254780567 and conserved domain: cd01123
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.08 E-value=0.029 Score=33.81 Aligned_cols=30 Identities=23% Similarity=0.334 Sum_probs=20.3
Q ss_pred HHHHHCC---CCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 9851016---78849998787778688999999
Q gi|254780567|r 56 IDSWPSW---PSRVVILVGPSGSGKSCLANIWS 85 (246)
Q Consensus 56 i~~~~~~---~~~~l~i~G~~GsGKTHLl~a~~ 85 (246)
T Consensus 8 lD~~L~GGi~~G~itEi~G~~GsGKTql~lqla 40 (235)
T cd01123 8 LDELLGGGIETGSITEIFGEFGSGKTQLCHQLA 40 (235)
T ss_pred HHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 996507996478799999999984999999999