HHsearch alignment for GI: 254780567 and conserved domain: cd01129
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.20 E-value=0.052 Score=32.25 Aligned_cols=50 Identities=16% Similarity=0.246 Sum_probs=35.4
Q ss_pred CCCCCCEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 68845416536189999999851016788499987877786889999998627
Q gi|254780567|r 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR 89 (246)
Q Consensus 37 ~~~~dnFiv~~~N~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~ 89 (246)
T Consensus 56 ~~~L~~LG~~~~~~~---~l~~~~~~~~GlilitGptGSGKtTtl~a~l~~~~ 105 (264)
T cd01129 56 ILDLEKLGLKPENLE---IFRKLLEKPHGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred CCCHHHHCCCHHHHH---HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 579879579999999---99999708998899978999977999999998643