HHsearch alignment for GI: 254780567 and conserved domain: cd01366
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=95.06 E-value=0.017 Score=35.31 Aligned_cols=48 Identities=19% Similarity=0.158 Sum_probs=30.6
Q ss_pred CCCCCCCCEEECC-CHHHHHHHH----HHHHCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 7668845416536-189999999----85101678849998787778688999
Q gi|254780567|r 35 CLGISRDDLLVHS-AIEQAVRLI----DSWPSWPSRVVILVGPSGSGKSCLAN 82 (246)
Q Consensus 35 ~~~~~~dnFiv~~-~N~~A~~~i----~~~~~~~~~~l~i~G~~GsGKTHLl~ 82 (246)
T Consensus 44 ~~~f~FD~Vf~~~~tQ~~vy~~v~plv~~~l~G~n~ti~aYGqTGSGKTyTm~ 96 (329)
T cd01366 44 KKSFSFDRVFDPDASQEDVFEEVSPLVQSALDGYNVCIFAYGQTGSGKTYTME 96 (329)
T ss_pred CEEEECCEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEC
T ss_conf 60777686739999989999999999999867772489964789999854726