HHsearch alignment for GI: 254780567 and conserved domain: cd01367
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=95.95 E-value=0.0067 Score=37.72 Aligned_cols=48 Identities=21% Similarity=0.126 Sum_probs=33.1
Q ss_pred CCCCCCCCEEECC-CHHHHHH-----HHHHHHCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 7668845416536-1899999-----9985101678849998787778688999
Q gi|254780567|r 35 CLGISRDDLLVHS-AIEQAVR-----LIDSWPSWPSRVVILVGPSGSGKSCLAN 82 (246)
Q Consensus 35 ~~~~~~dnFiv~~-~N~~A~~-----~i~~~~~~~~~~l~i~G~~GsGKTHLl~ 82 (246)
T Consensus 50 ~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~l~G~n~ti~aYGqTGSGKTyTm~ 103 (322)
T cd01367 50 KHTFRFDYVFDEAVTNEEVYRSTVKPLIPHVFEGGVATCFAYGQTGSGKTYTML 103 (322)
T ss_pred CCEEECCEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEC
T ss_conf 845657756499999899999998999999868987489994268888726842