HHsearch alignment for GI: 254780567 and conserved domain: cd01375
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=95.69 E-value=0.0076 Score=37.40 Aligned_cols=47 Identities=17% Similarity=0.208 Sum_probs=32.4
Q ss_pred CCCCCCEEECCCHHHHHHH-----HHHHHCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 6884541653618999999-----9851016788499987877786889999
Q gi|254780567|r 37 GISRDDLLVHSAIEQAVRL-----IDSWPSWPSRVVILVGPSGSGKSCLANI 83 (246)
Q Consensus 37 ~~~~dnFiv~~~N~~A~~~-----i~~~~~~~~~~l~i~G~~GsGKTHLl~a 83 (246)
T Consensus 49 ~F~Fd~Vf~~~tQ~evy~~~~~plv~~~l~G~n~ti~aYGqTGSGKTyTm~G 100 (334)
T cd01375 49 SFKFDGVFHNASQEEVYETVAKPVVDSALDGYNGTIFAYGQTGAGKTFTMTG 100 (334)
T ss_pred EEECCEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECC
T ss_conf 7777867799998999999989999998588725799713568997588137