>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Probab=96.19  E-value=0.0049  Score=38.56  Aligned_cols=25  Identities=44%  Similarity=0.648  Sum_probs=22.1

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf             7884999878777868899999986
Q gi|254780567|r   63 PSRVVILVGPSGSGKSCLANIWSDK   87 (246)
Q Consensus        63 ~~~~l~i~G~~GsGKTHLl~a~~~~   87 (246)
T Consensus        25 ~Ge~~~ivGpSG~GKSTllr~i~Gl   49 (178)
T cd03229          25 AGEIVALLGPSGSGKSTLLRCIAGL   49 (178)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf             9989999999998399999999859