HHsearch alignment for GI: 254780567 and conserved domain: cd03248
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=95.26 E-value=0.018 Score=35.02 Aligned_cols=27 Identities=44% Similarity=0.682 Sum_probs=23.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 678849998787778688999999862
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDKS 88 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~~ 88 (246)
T Consensus 38 ~~Ge~vaIvG~sGsGKSTL~~ll~gl~ 64 (226)
T cd03248 38 HPGEVTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 299999999999984999999996454