>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Probab=95.66  E-value=0.011  Score=36.31  Aligned_cols=27  Identities=48%  Similarity=0.576  Sum_probs=22.9

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             678849998787778688999999862
Q gi|254780567|r   62 WPSRVVILVGPSGSGKSCLANIWSDKS   88 (246)
Q Consensus        62 ~~~~~l~i~G~~GsGKTHLl~a~~~~~   88 (246)
T Consensus        26 ~~Ge~i~IvG~sGsGKSTLl~ll~gl~   52 (234)
T cd03251          26 PAGETVALVGPSGSGKSTLVNLIPRFY   52 (234)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf             799999999899982999999996676