HHsearch alignment for GI: 254780567 and conserved domain: cd03255
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.50 E-value=0.013 Score=35.87 Aligned_cols=25 Identities=52% Similarity=0.721 Sum_probs=21.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 7884999878777868899999986
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
T Consensus 29 ~Ge~~~iiG~sGsGKTTll~~i~Gl 53 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 9989999999998699999999669