>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Probab=96.33  E-value=0.0033  Score=39.60  Aligned_cols=25  Identities=32%  Similarity=0.488  Sum_probs=21.6

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf             7884999878777868899999986
Q gi|254780567|r   63 PSRVVILVGPSGSGKSCLANIWSDK   87 (246)
Q Consensus        63 ~~~~l~i~G~~GsGKTHLl~a~~~~   87 (246)
T Consensus        49 ~GE~~~ivG~SGsGKSTLLr~i~GL   73 (269)
T cd03294          49 EGEIFVIMGLSGSGKSTLLRCINRL   73 (269)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf             9999999989984899999999759