Query gi|254780567|ref|YP_003064980.1| hypothetical protein CLIBASIA_02270 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 246
No_of_seqs 155 out of 2866
Neff 7.9
Searched_HMMs 39220
Date Sun May 29 22:25:12 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780567.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09087 hypothetical protein; 100.0 0 0 409.6 20.6 224 23-246 3-226 (226)
2 PRK08084 DNA replication initi 100.0 0 0 382.1 18.4 220 21-240 2-234 (235)
3 PRK06620 hypothetical protein; 100.0 0 0 373.8 19.2 209 26-240 1-214 (214)
4 TIGR03420 DnaA_homol_Hda DnaA 100.0 0 0 371.5 17.8 213 27-240 1-226 (226)
5 PRK08903 hypothetical protein; 100.0 0 0 370.0 18.1 217 24-242 1-226 (227)
6 COG0593 DnaA ATPase involved i 100.0 0 0 365.0 20.3 224 22-245 68-316 (408)
7 PRK05642 DNA replication initi 100.0 0 0 367.6 17.7 216 24-240 2-233 (234)
8 PRK08727 hypothetical protein; 100.0 0 0 366.8 17.8 219 24-243 2-232 (233)
9 PRK06893 DNA replication initi 100.0 0 0 363.7 17.3 214 27-240 2-228 (229)
10 PRK00149 dnaA chromosomal repl 100.0 0 0 332.5 20.8 216 29-244 107-348 (447)
11 PRK12422 chromosomal replicati 100.0 0 0 318.1 18.4 212 33-244 103-345 (455)
12 pfam00308 Bac_DnaA Bacterial d 100.0 0 0 317.2 18.0 191 34-224 1-217 (219)
13 TIGR00362 DnaA chromosomal rep 100.0 1.5E-27 3.7E-32 189.5 15.3 214 30-243 143-383 (493)
14 PRK13342 recombination factor 99.8 6.8E-18 1.7E-22 130.0 14.0 199 34-242 7-224 (417)
15 PRK13341 recombination factor 99.8 3E-17 7.8E-22 126.0 13.3 205 26-242 14-247 (726)
16 PRK04195 replication factor C 99.7 1.3E-15 3.2E-20 116.0 15.6 188 39-237 12-221 (403)
17 pfam05496 RuvB_N Holliday junc 99.7 7.6E-16 1.9E-20 117.4 13.9 184 34-227 18-233 (234)
18 PRK00080 ruvB Holliday junctio 99.7 5.6E-15 1.4E-19 112.1 16.7 206 30-243 15-251 (328)
19 COG2256 MGS1 ATPase related to 99.7 3.2E-15 8.3E-20 113.5 13.4 205 29-243 13-239 (436)
20 PRK00440 rfc replication facto 99.7 3.9E-15 9.9E-20 113.1 13.7 187 39-240 14-223 (318)
21 TIGR00635 ruvB Holliday juncti 99.6 5.3E-15 1.3E-19 112.2 13.3 197 39-242 2-229 (305)
22 PRK08116 hypothetical protein; 99.6 9.2E-16 2.3E-20 116.9 8.1 147 37-185 75-253 (262)
23 PRK12402 replication factor C 99.6 1.2E-14 3.1E-19 110.0 13.2 186 39-238 13-246 (337)
24 COG2255 RuvB Holliday junction 99.5 5.6E-12 1.4E-16 93.6 16.5 210 26-243 12-252 (332)
25 PRK06921 hypothetical protein; 99.5 1E-13 2.6E-18 104.3 6.8 141 36-176 78-256 (265)
26 TIGR02397 dnaX_nterm DNA polym 99.5 1.4E-12 3.5E-17 97.3 12.5 192 34-241 8-243 (363)
27 KOG2028 consensus 99.5 2.3E-12 5.9E-17 96.0 12.8 204 28-243 126-369 (554)
28 KOG0989 consensus 99.4 3.4E-12 8.6E-17 95.0 12.4 206 20-240 12-251 (346)
29 PRK07952 DNA replication prote 99.4 2.7E-13 6.9E-18 101.7 6.7 142 33-175 58-233 (242)
30 PRK06835 DNA replication prote 99.4 1.2E-12 3E-17 97.8 9.1 126 54-180 174-324 (330)
31 PRK05896 DNA polymerase III su 99.4 5.7E-12 1.4E-16 93.6 12.6 187 39-240 14-242 (613)
32 PRK05563 DNA polymerase III su 99.4 2.8E-11 7.1E-16 89.3 15.7 188 39-240 14-242 (541)
33 PRK03992 proteasome-activating 99.4 3.5E-11 9E-16 88.7 15.5 175 63-243 165-374 (390)
34 PRK07270 DNA polymerase III su 99.4 1.8E-11 4.5E-16 90.5 13.0 189 39-240 13-242 (557)
35 PRK06647 DNA polymerase III su 99.4 4.8E-11 1.2E-15 87.9 14.3 195 30-240 6-242 (560)
36 PRK12377 putative replication 99.3 7.3E-12 1.9E-16 92.9 8.4 144 31-175 61-237 (248)
37 PRK00411 cdc6 cell division co 99.3 2E-10 5.2E-15 84.0 15.4 207 35-244 24-284 (394)
38 PRK07133 DNA polymerase III su 99.3 6.5E-11 1.7E-15 87.1 12.7 198 28-240 6-241 (718)
39 PRK06305 DNA polymerase III su 99.3 1.4E-10 3.6E-15 85.0 14.4 188 39-240 15-244 (462)
40 PRK06645 DNA polymerase III su 99.3 1.4E-10 3.5E-15 85.0 14.2 200 29-240 10-254 (507)
41 PRK08451 DNA polymerase III su 99.3 1.7E-10 4.3E-15 84.5 13.3 189 39-241 12-241 (523)
42 TIGR03015 pepcterm_ATPase puta 99.3 2E-09 5E-14 77.9 18.6 206 36-243 15-267 (269)
43 PRK06674 DNA polymerase III su 99.3 3.9E-10 1E-14 82.2 14.3 188 39-240 14-242 (563)
44 COG1223 Predicted ATPase (AAA+ 99.3 1.9E-10 4.8E-15 84.2 12.3 200 35-241 115-354 (368)
45 pfam01695 IstB IstB-like ATP b 99.2 3.9E-12 9.8E-17 94.6 3.5 120 36-157 15-160 (178)
46 CHL00176 ftsH cell division pr 99.2 2.9E-10 7.4E-15 83.1 13.1 202 34-242 170-417 (631)
47 PRK07003 DNA polymerase III su 99.2 1.5E-09 3.9E-14 78.6 15.0 190 39-242 14-244 (816)
48 PRK09183 transposase/IS protei 99.2 2.2E-11 5.7E-16 89.9 4.7 140 38-178 71-244 (258)
49 PRK08181 transposase; Validate 99.2 2E-11 5E-16 90.2 4.1 124 58-183 101-252 (269)
50 PRK08939 primosomal protein Dn 99.2 6.4E-11 1.6E-15 87.1 6.1 117 37-153 124-268 (306)
51 CHL00195 ycf46 Ycf46; Provisio 99.1 3.5E-09 8.8E-14 76.4 14.2 177 63-242 258-463 (491)
52 KOG0730 consensus 99.1 1.7E-09 4.2E-14 78.4 12.6 173 63-242 467-671 (693)
53 PRK06526 transposase; Provisio 99.1 3.1E-11 7.9E-16 89.0 3.6 137 38-176 68-237 (254)
54 PRK10733 hflB ATP-dependent me 99.1 1.8E-09 4.6E-14 78.1 11.4 199 35-241 146-391 (644)
55 PRK08853 DNA polymerase III su 99.1 1.4E-08 3.6E-13 72.7 15.9 190 39-242 14-244 (717)
56 COG1484 DnaC DNA replication p 99.1 2E-10 5E-15 84.1 6.0 131 35-166 73-234 (254)
57 COG0464 SpoVK ATPases of the A 99.1 1.8E-08 4.6E-13 72.0 15.9 202 35-241 236-482 (494)
58 PRK08691 DNA polymerase III su 99.1 1.3E-08 3.3E-13 72.9 14.9 190 39-242 14-244 (704)
59 PRK12323 DNA polymerase III su 99.1 7.4E-09 1.9E-13 74.4 13.6 193 34-241 10-248 (721)
60 COG1474 CDC6 Cdc6-related prot 99.1 5.7E-09 1.5E-13 75.1 12.8 192 50-243 28-266 (366)
61 PRK06872 DNA polymerase III su 99.1 2.4E-08 6E-13 71.3 15.4 190 39-242 14-244 (696)
62 COG2812 DnaX DNA polymerase II 99.0 7E-09 1.8E-13 74.5 11.5 186 39-242 14-244 (515)
63 PRK07764 DNA polymerase III su 99.0 1E-08 2.6E-13 73.6 12.3 189 39-240 13-244 (775)
64 PRK09111 DNA polymerase III su 99.0 1.4E-08 3.7E-13 72.6 13.1 195 32-241 15-255 (600)
65 PRK07994 DNA polymerase III su 99.0 3.8E-08 9.7E-13 70.0 14.9 189 39-241 14-243 (643)
66 PRK05648 DNA polymerase III su 98.9 8.6E-08 2.2E-12 67.8 14.7 186 39-242 14-244 (705)
67 COG1222 RPT1 ATP-dependent 26S 98.9 3.4E-08 8.6E-13 70.4 12.6 174 63-241 184-391 (406)
68 TIGR02902 spore_lonB ATP-depen 98.9 2.7E-08 6.8E-13 71.0 11.9 217 14-241 35-331 (532)
69 PRK08770 DNA polymerase III su 98.9 1.3E-07 3.3E-12 66.7 15.1 186 39-242 14-244 (663)
70 TIGR02903 spore_lon_C ATP-depe 98.9 3.6E-08 9.1E-13 70.2 12.0 195 35-241 151-430 (616)
71 TIGR01241 FtsH_fam ATP-depende 98.9 2.4E-08 6.1E-13 71.3 10.8 184 52-241 74-299 (505)
72 KOG0735 consensus 98.9 9.5E-08 2.4E-12 67.6 13.5 174 65-241 432-647 (952)
73 TIGR00763 lon ATP-dependent pr 98.9 3.7E-09 9.4E-14 76.3 5.6 152 63-220 448-658 (941)
74 KOG2035 consensus 98.8 9.2E-08 2.4E-12 67.6 11.7 164 49-219 18-232 (351)
75 CHL00181 cbbX CbbX; Provisiona 98.8 1.5E-07 3.7E-12 66.4 11.9 153 65-219 60-250 (287)
76 TIGR01243 CDC48 AAA family ATP 98.8 2.2E-07 5.5E-12 65.4 12.0 173 62-242 238-442 (980)
77 KOG0733 consensus 98.8 2.2E-07 5.5E-12 65.4 11.5 123 63-188 222-376 (802)
78 KOG0733 consensus 98.7 3.9E-08 9.8E-13 70.0 7.4 150 65-218 546-728 (802)
79 cd00009 AAA The AAA+ (ATPases 98.7 3.3E-08 8.5E-13 70.4 7.0 111 51-163 5-144 (151)
80 PRK10787 DNA-binding ATP-depen 98.7 6.5E-07 1.7E-11 62.4 12.5 173 61-240 346-580 (784)
81 KOG1969 consensus 98.7 3.5E-07 8.9E-12 64.1 10.7 182 47-237 278-532 (877)
82 KOG0740 consensus 98.7 4.6E-07 1.2E-11 63.3 10.8 175 63-242 185-404 (428)
83 PRK11388 DNA-binding transcrip 98.6 1.1E-06 2.7E-11 61.1 12.3 198 35-237 319-566 (639)
84 KOG0730 consensus 98.6 1.6E-06 4.1E-11 60.0 12.8 139 63-206 217-383 (693)
85 PRK10820 DNA-binding transcrip 98.6 7.6E-07 1.9E-11 62.0 11.1 199 28-231 191-436 (513)
86 PRK11608 pspF phage shock prot 98.6 1.5E-06 3.7E-11 60.3 11.8 176 42-219 6-236 (325)
87 pfam03969 AFG1_ATPase AFG1-lik 98.6 1.1E-07 2.7E-12 67.2 6.0 114 63-176 60-203 (361)
88 KOG0738 consensus 98.6 4.8E-06 1.2E-10 57.1 14.4 164 34-207 205-415 (491)
89 KOG0735 consensus 98.6 2.2E-06 5.6E-11 59.2 12.2 163 49-217 672-879 (952)
90 PTZ00112 origin recognition co 98.6 3.2E-06 8E-11 58.2 12.9 189 51-242 278-513 (650)
91 PRK10923 glnG nitrogen regulat 98.6 2.9E-06 7.5E-11 58.4 12.7 186 44-233 140-379 (469)
92 PRK09112 DNA polymerase III su 98.6 1.4E-06 3.6E-11 60.3 10.9 185 42-237 23-269 (352)
93 PRK10365 transcriptional regul 98.5 2.8E-06 7.1E-11 58.5 12.1 187 44-234 141-381 (441)
94 pfam01637 Arch_ATPase Archaeal 98.5 2.7E-06 6.8E-11 58.6 11.8 157 53-213 8-221 (223)
95 PRK11361 acetoacetate metaboli 98.5 3.2E-06 8.2E-11 58.2 12.2 196 35-235 137-386 (457)
96 pfam03215 Rad17 Rad17 cell cyc 98.5 7.6E-06 1.9E-10 55.9 14.1 168 53-224 32-260 (490)
97 KOG1514 consensus 98.5 3.6E-06 9.1E-11 57.9 11.8 190 53-244 409-657 (767)
98 COG1224 TIP49 DNA helicase TIP 98.5 1.4E-05 3.6E-10 54.2 14.5 112 125-239 306-429 (450)
99 pfam05621 TniB Bacterial TniB 98.5 1.6E-05 4.1E-10 53.8 14.7 187 50-238 43-285 (302)
100 KOG0731 consensus 98.5 1E-05 2.6E-10 55.0 13.5 204 33-240 303-551 (774)
101 COG0466 Lon ATP-dependent Lon 98.5 1.4E-06 3.7E-11 60.3 9.1 172 63-240 349-582 (782)
102 TIGR03345 VI_ClpV1 type VI sec 98.5 1.8E-06 4.6E-11 59.7 9.5 50 154-206 751-810 (852)
103 TIGR02928 TIGR02928 orc1/cdc6 98.5 1.1E-05 2.7E-10 55.0 13.4 203 35-242 9-288 (383)
104 COG1485 Predicted ATPase [Gene 98.5 1.7E-07 4.4E-12 66.0 4.2 89 63-151 64-175 (367)
105 TIGR02639 ClpA ATP-dependent C 98.5 1E-06 2.6E-11 61.3 7.9 187 44-239 499-760 (774)
106 pfam05673 DUF815 Protein of un 98.4 1.8E-05 4.7E-10 53.5 14.1 185 31-219 18-244 (248)
107 KOG0737 consensus 98.4 3.2E-06 8.1E-11 58.2 10.1 125 63-192 126-280 (386)
108 TIGR01242 26Sp45 26S proteasom 98.4 1.8E-07 4.7E-12 65.8 3.8 174 63-241 155-362 (364)
109 PRK05564 DNA polymerase III su 98.4 1.6E-06 4.2E-11 60.0 8.6 164 38-217 1-192 (313)
110 PRK11034 clpA ATP-dependent Cl 98.4 6.9E-06 1.8E-10 56.1 11.5 201 39-244 183-435 (758)
111 KOG0727 consensus 98.4 4.7E-06 1.2E-10 57.1 10.3 177 62-242 187-396 (408)
112 KOG0734 consensus 98.4 2E-06 5.2E-11 59.4 8.3 193 37-234 300-533 (752)
113 pfam06068 TIP49 TIP49 C-termin 98.4 2.6E-05 6.7E-10 52.5 13.7 89 125-216 290-389 (395)
114 KOG0726 consensus 98.4 1.4E-06 3.6E-11 60.4 6.8 173 62-240 217-424 (440)
115 TIGR03346 chaperone_ClpB ATP-d 98.4 3.4E-06 8.7E-11 58.0 8.8 22 66-87 597-618 (852)
116 COG0470 HolB ATPase involved i 98.3 1.5E-05 3.9E-10 54.0 11.6 153 49-219 6-203 (325)
117 KOG2004 consensus 98.3 4.2E-06 1.1E-10 57.5 8.4 152 63-220 437-642 (906)
118 CHL00095 clpC Clp protease ATP 98.3 5.6E-06 1.4E-10 56.7 8.6 159 40-203 177-375 (823)
119 PRK07399 DNA polymerase III su 98.3 1.1E-05 2.9E-10 54.8 10.2 168 40-222 3-228 (314)
120 PRK10865 protein disaggregatio 98.3 5.2E-06 1.3E-10 56.9 8.4 44 42-86 178-221 (857)
121 PRK11034 clpA ATP-dependent Cl 98.3 6.8E-06 1.7E-10 56.1 8.9 142 63-206 487-695 (758)
122 pfam00004 AAA ATPase family as 98.3 1.4E-06 3.5E-11 60.4 5.0 97 67-166 1-127 (131)
123 PRK10865 protein disaggregatio 98.2 1.5E-05 3.9E-10 54.0 9.6 170 63-241 597-836 (857)
124 PRK07471 DNA polymerase III su 98.2 2E-05 5E-10 53.3 10.0 160 44-217 19-239 (363)
125 TIGR01243 CDC48 AAA family ATP 98.2 1.6E-05 4.2E-10 53.8 9.1 150 63-217 574-754 (980)
126 CHL00095 clpC Clp protease ATP 98.2 1.2E-05 3.1E-10 54.6 8.3 168 63-242 538-792 (823)
127 COG0542 clpA ATP-binding subun 98.2 1.9E-05 4.9E-10 53.4 8.9 171 62-241 519-762 (786)
128 pfam00931 NB-ARC NB-ARC domain 98.1 5.4E-05 1.4E-09 50.6 11.0 141 63-214 18-200 (285)
129 TIGR02881 spore_V_K stage V sp 98.1 0.0001 2.7E-09 48.8 12.4 164 67-232 45-250 (261)
130 KOG0652 consensus 98.1 1.1E-05 2.7E-10 54.9 7.2 145 62-212 203-379 (424)
131 TIGR03346 chaperone_ClpB ATP-d 98.1 3.3E-05 8.4E-10 52.0 9.5 177 26-207 157-374 (852)
132 KOG0744 consensus 98.1 9.7E-06 2.5E-10 55.2 6.3 133 64-201 177-358 (423)
133 KOG0739 consensus 98.1 1.9E-05 4.8E-10 53.5 7.7 138 63-206 165-332 (439)
134 KOG0743 consensus 98.1 7.7E-05 2E-09 49.7 10.9 173 29-206 191-418 (457)
135 COG0465 HflB ATP-dependent Zn 98.1 6.5E-05 1.7E-09 50.1 10.3 202 36-241 145-389 (596)
136 PRK05342 clpX ATP-dependent pr 98.0 9.4E-05 2.4E-09 49.1 10.6 191 30-222 60-377 (411)
137 PRK05574 holA DNA polymerase I 98.0 0.00043 1.1E-08 45.1 13.8 80 163-244 136-215 (336)
138 KOG0991 consensus 98.0 5.5E-05 1.4E-09 50.6 9.0 170 48-225 31-225 (333)
139 COG1373 Predicted ATPase (AAA+ 98.0 0.00012 3.2E-09 48.4 10.7 169 66-240 39-247 (398)
140 KOG1942 consensus 98.0 0.00086 2.2E-08 43.2 15.0 111 125-238 311-434 (456)
141 PRK05022 anaerobic nitric oxid 98.0 0.00012 2.9E-09 48.6 9.9 177 43-221 187-417 (510)
142 KOG1970 consensus 98.0 0.00025 6.4E-09 46.5 11.5 166 54-223 92-320 (634)
143 KOG0742 consensus 97.9 0.0001 2.6E-09 48.9 9.4 201 36-241 350-611 (630)
144 TIGR03345 VI_ClpV1 type VI sec 97.9 5.6E-05 1.4E-09 50.5 7.7 160 41-205 186-386 (852)
145 KOG0728 consensus 97.9 0.00012 3.1E-09 48.5 8.7 160 65-233 182-379 (404)
146 cd02021 GntK Gluconate kinase 97.8 4.3E-05 1.1E-09 51.2 5.8 127 67-198 2-128 (150)
147 COG1221 PspF Transcriptional r 97.8 0.00065 1.7E-08 44.0 11.7 186 36-224 73-310 (403)
148 KOG1968 consensus 97.8 7.2E-05 1.8E-09 49.9 6.7 163 51-219 331-535 (871)
149 PRK07452 DNA polymerase III su 97.8 0.00063 1.6E-08 44.0 11.3 131 107-242 61-199 (326)
150 KOG0729 consensus 97.8 4.3E-05 1.1E-09 51.2 5.3 162 63-230 210-405 (435)
151 COG1466 HolA DNA polymerase II 97.8 0.0016 4E-08 41.6 13.3 105 137-244 105-209 (334)
152 pfam07728 AAA_5 AAA domain (dy 97.8 1.6E-05 4.1E-10 53.8 3.0 23 66-88 1-23 (139)
153 KOG2228 consensus 97.8 0.00016 4.1E-09 47.7 7.8 144 43-186 27-219 (408)
154 COG2607 Predicted ATPase (AAA+ 97.7 0.0015 3.9E-08 41.7 12.7 161 58-220 78-278 (287)
155 KOG2383 consensus 97.7 0.0001 2.6E-09 48.9 6.6 89 64-152 114-239 (467)
156 PRK08058 DNA polymerase III su 97.7 0.00067 1.7E-08 43.9 10.4 149 50-215 12-204 (329)
157 pfam00158 Sigma54_activat Sigm 97.7 0.00014 3.5E-09 48.1 6.8 120 44-164 1-164 (168)
158 pfam05729 NACHT NACHT domain. 97.7 0.00032 8.1E-09 45.9 8.4 57 126-188 108-164 (165)
159 KOG0736 consensus 97.7 0.00043 1.1E-08 45.1 9.1 176 38-219 395-609 (953)
160 PRK08769 DNA polymerase III su 97.7 0.001 2.6E-08 42.7 10.6 149 50-212 10-205 (319)
161 TIGR03167 tRNA_sel_U_synt tRNA 97.7 0.0016 4E-08 41.6 11.6 113 63-185 126-244 (311)
162 KOG0651 consensus 97.6 8.7E-05 2.2E-09 49.3 5.0 85 63-147 165-281 (388)
163 CHL00081 chlI Mg-protoporyphyr 97.6 0.004 1E-07 39.1 13.4 193 44-240 14-315 (347)
164 COG3267 ExeA Type II secretory 97.6 0.0038 9.7E-08 39.2 13.1 208 25-237 16-268 (269)
165 COG0542 clpA ATP-binding subun 97.6 0.00076 1.9E-08 43.5 9.5 195 24-223 152-390 (786)
166 PRK13407 bchI magnesium chelat 97.6 0.0055 1.4E-07 38.2 13.9 100 138-240 170-304 (334)
167 PRK06585 holA DNA polymerase I 97.6 0.0064 1.6E-07 37.9 15.3 184 55-245 12-213 (343)
168 PRK04841 transcriptional regul 97.6 0.00047 1.2E-08 44.8 8.1 145 63-214 31-224 (903)
169 KOG2170 consensus 97.6 0.0041 1.1E-07 39.0 12.8 198 39-243 79-320 (344)
170 PRK07940 DNA polymerase III su 97.6 0.0013 3.4E-08 42.1 10.1 126 65-203 40-204 (395)
171 KOG0732 consensus 97.6 0.0011 2.9E-08 42.5 9.7 156 62-220 297-485 (1080)
172 COG2204 AtoC Response regulato 97.6 0.0035 8.9E-08 39.5 12.1 184 44-233 143-382 (464)
173 PRK07132 DNA polymerase III su 97.5 0.0017 4.2E-08 41.5 10.3 127 49-184 3-162 (303)
174 KOG0736 consensus 97.5 0.0045 1.2E-07 38.8 12.1 140 65-211 706-881 (953)
175 pfam00493 MCM MCM2/3/5 family. 97.5 0.00058 1.5E-08 44.3 7.5 176 66-243 59-323 (327)
176 KOG0741 consensus 97.3 0.0011 2.9E-08 42.5 7.3 187 34-225 212-457 (744)
177 KOG2227 consensus 97.3 0.012 3.2E-07 36.1 12.5 157 63-219 174-372 (529)
178 PRK11545 gntK gluconate kinase 97.3 0.0025 6.3E-08 40.4 8.7 83 64-147 8-90 (177)
179 PRK08233 hypothetical protein; 97.3 0.0014 3.5E-08 42.0 7.3 128 66-201 5-136 (182)
180 PRK06871 DNA polymerase III su 97.3 0.0035 9E-08 39.5 9.2 113 64-185 23-177 (324)
181 smart00382 AAA ATPases associa 97.2 0.00087 2.2E-08 43.2 6.0 28 64-91 2-29 (148)
182 COG0714 MoxR-like ATPases [Gen 97.2 0.009 2.3E-07 36.9 11.1 194 41-240 23-293 (329)
183 PRK05707 DNA polymerase III su 97.2 0.0051 1.3E-07 38.5 9.5 112 65-185 23-177 (328)
184 TIGR00602 rad24 checkpoint pro 97.2 0.00061 1.6E-08 44.1 4.6 177 38-219 78-349 (670)
185 PRK09825 idnK D-gluconate kina 97.2 0.00076 1.9E-08 43.5 5.0 83 64-147 3-85 (176)
186 PRK00300 gmk guanylate kinase; 97.2 0.0008 2E-08 43.4 5.1 117 62-184 5-139 (208)
187 cd01882 BMS1 Bms1. Bms1 is an 97.1 0.001 2.6E-08 42.8 5.5 97 66-162 41-163 (225)
188 PRK11784 tRNA 2-selenouridine 97.1 0.016 4.2E-07 35.4 11.6 111 65-187 138-254 (333)
189 COG3829 RocR Transcriptional r 97.1 0.015 3.9E-07 35.5 11.4 185 34-221 238-477 (560)
190 PRK03731 aroL shikimate kinase 97.1 0.0028 7.3E-08 40.0 7.6 104 64-181 2-111 (172)
191 TIGR02782 TrbB_P P-type conjug 97.1 0.00052 1.3E-08 44.6 3.8 95 35-155 110-206 (315)
192 KOG0990 consensus 97.1 0.0027 6.8E-08 40.2 7.2 187 26-225 25-239 (360)
193 smart00350 MCM minichromosome 97.1 0.011 2.8E-07 36.4 10.4 176 66-243 238-505 (509)
194 TIGR02673 FtsE cell division A 97.1 0.00045 1.1E-08 44.9 3.2 26 62-87 26-51 (215)
195 TIGR02173 cyt_kin_arch cytidyl 97.1 0.00044 1.1E-08 45.0 3.1 33 67-99 3-35 (173)
196 KOG0741 consensus 97.1 0.014 3.5E-07 35.8 10.7 125 57-184 531-684 (744)
197 TIGR02640 gas_vesic_GvpN gas v 97.1 0.0009 2.3E-08 43.1 4.6 149 43-202 1-209 (265)
198 PRK02496 adk adenylate kinase; 97.0 0.0077 2E-07 37.4 9.2 116 65-184 2-128 (185)
199 TIGR03263 guanyl_kin guanylate 97.0 0.0038 9.6E-08 39.3 7.4 119 64-192 1-136 (180)
200 TIGR01817 nifA Nif-specific re 97.0 0.0085 2.2E-07 37.1 9.1 197 33-233 203-453 (574)
201 PRK13695 putative NTPase; Prov 97.0 0.0035 8.9E-08 39.5 7.0 61 110-178 102-162 (174)
202 TIGR02982 heterocyst_DevA ABC 97.0 0.00061 1.5E-08 44.2 3.0 23 62-84 29-51 (220)
203 PRK05201 hslU ATP-dependent pr 96.9 0.0016 4.1E-08 41.5 5.0 130 109-243 250-432 (442)
204 pfam00625 Guanylate_kin Guanyl 96.9 0.0022 5.6E-08 40.7 5.7 114 65-184 2-133 (182)
205 PRK06090 DNA polymerase III su 96.9 0.0056 1.4E-07 38.2 7.6 119 64-196 25-186 (319)
206 cd01428 ADK Adenylate kinase ( 96.9 0.0057 1.4E-07 38.2 7.5 116 67-185 2-126 (194)
207 PRK08118 topology modulation p 96.9 0.035 9E-07 33.3 11.6 127 65-217 2-143 (167)
208 COG3842 PotA ABC-type spermidi 96.9 0.00095 2.4E-08 42.9 3.4 24 63-86 30-53 (352)
209 TIGR02639 ClpA ATP-dependent C 96.9 0.0055 1.4E-07 38.3 7.3 180 62-246 228-475 (774)
210 COG3839 MalK ABC-type sugar tr 96.9 0.00098 2.5E-08 42.9 3.4 24 63-86 28-51 (338)
211 pfam06414 Zeta_toxin Zeta toxi 96.9 0.017 4.3E-07 35.2 9.6 143 63-208 11-164 (191)
212 cd01130 VirB11-like_ATPase Typ 96.8 0.011 2.8E-07 36.4 8.3 42 47-89 9-50 (186)
213 PRK00131 aroK shikimate kinase 96.8 0.0084 2.1E-07 37.1 7.7 33 64-96 4-36 (175)
214 COG1136 SalX ABC-type antimicr 96.8 0.0013 3.3E-08 42.1 3.5 25 62-86 29-53 (226)
215 PRK13947 shikimate kinase; Pro 96.8 0.0092 2.4E-07 36.9 7.6 33 65-97 2-34 (171)
216 pfam07726 AAA_3 ATPase family 96.7 0.0013 3.4E-08 42.0 3.2 27 67-93 2-28 (131)
217 PRK08487 DNA polymerase III su 96.7 0.05 1.3E-06 32.4 11.5 75 163-241 125-199 (328)
218 pfam00437 GSPII_E Type II/IV s 96.7 0.0028 7E-08 40.1 4.7 54 35-89 110-164 (283)
219 TIGR03608 L_ocin_972_ABC putat 96.7 0.0016 4E-08 41.6 3.4 25 62-86 22-46 (206)
220 PRK05057 aroK shikimate kinase 96.7 0.013 3.3E-07 36.0 8.0 34 63-96 3-36 (172)
221 PRK05917 DNA polymerase III su 96.7 0.013 3.2E-07 36.0 7.9 36 52-87 5-42 (290)
222 pfam00910 RNA_helicase RNA hel 96.7 0.0012 3.1E-08 42.3 2.7 53 67-120 1-62 (105)
223 smart00072 GuKc Guanylate kina 96.7 0.0039 9.9E-08 39.2 5.3 112 64-184 2-134 (184)
224 pfam06144 DNA_pol3_delta DNA p 96.7 0.016 4.2E-07 35.3 8.4 80 137-219 91-170 (172)
225 PRK07993 DNA polymerase III su 96.7 0.021 5.3E-07 34.7 8.9 111 65-185 25-179 (334)
226 TIGR02442 Cob-chelat-sub cobal 96.6 0.052 1.3E-06 32.3 10.6 188 44-240 6-307 (688)
227 TIGR00972 3a0107s01c2 phosphat 96.6 0.0012 3.2E-08 42.2 2.3 25 63-87 26-50 (248)
228 TIGR00455 apsK adenylylsulfate 96.6 0.0017 4.3E-08 41.4 2.9 97 63-170 18-123 (187)
229 KOG2543 consensus 96.6 0.017 4.4E-07 35.2 8.1 149 65-220 31-231 (438)
230 COG0703 AroK Shikimate kinase 96.6 0.01 2.6E-07 36.6 6.9 34 64-97 2-35 (172)
231 PRK00091 miaA tRNA delta(2)-is 96.6 0.0019 4.9E-08 41.1 3.0 34 64-97 4-37 (304)
232 PRK04132 replication factor C 96.6 0.056 1.4E-06 32.1 10.5 102 127-239 665-766 (863)
233 COG1116 TauB ABC-type nitrate/ 96.5 0.0024 6E-08 40.5 3.5 25 62-86 27-51 (248)
234 cd00464 SK Shikimate kinase (S 96.5 0.013 3.4E-07 35.9 7.3 112 67-193 2-119 (154)
235 cd03262 ABC_HisP_GlnQ_permease 96.5 0.0023 5.8E-08 40.6 3.3 25 62-86 24-48 (213)
236 TIGR00390 hslU heat shock prot 96.5 0.0042 1.1E-07 39.0 4.6 197 38-244 8-249 (463)
237 TIGR00368 TIGR00368 Mg chelata 96.5 0.003 7.8E-08 39.8 3.9 58 21-82 174-231 (505)
238 cd03301 ABC_MalK_N The N-termi 96.5 0.0024 6.2E-08 40.4 3.4 25 63-87 25-49 (213)
239 pfam03266 DUF265 Protein of un 96.5 0.0037 9.5E-08 39.3 4.3 21 67-87 2-22 (168)
240 TIGR00678 holB DNA polymerase 96.5 0.0054 1.4E-07 38.3 5.0 134 63-208 13-212 (216)
241 cd00071 GMPK Guanosine monopho 96.5 0.0066 1.7E-07 37.8 5.5 114 67-186 2-133 (137)
242 PRK07261 topology modulation p 96.5 0.025 6.5E-07 34.2 8.4 112 67-204 3-130 (171)
243 PRK06964 DNA polymerase III su 96.5 0.019 4.9E-07 34.9 7.7 29 153-184 174-202 (342)
244 PHA02244 ATPase-like protein 96.5 0.0028 7.1E-08 40.1 3.4 30 63-92 118-147 (383)
245 KOG3354 consensus 96.4 0.014 3.5E-07 35.8 6.8 89 62-151 9-98 (191)
246 PRK05629 hypothetical protein; 96.4 0.027 6.8E-07 34.0 8.2 77 163-242 128-204 (331)
247 KOG0478 consensus 96.4 0.041 1.1E-06 32.9 9.1 110 66-176 464-616 (804)
248 PRK10078 ribose 1,5-bisphospho 96.4 0.0086 2.2E-07 37.0 5.6 26 64-89 2-27 (184)
249 TIGR03265 PhnT2 putative 2-ami 96.4 0.003 7.7E-08 39.8 3.2 26 62-87 28-53 (353)
250 COG4178 ABC-type uncharacteriz 96.4 0.0035 8.8E-08 39.5 3.5 51 35-87 390-442 (604)
251 PRK13946 shikimate kinase; Pro 96.3 0.036 9.3E-07 33.2 8.5 34 63-96 19-52 (195)
252 TIGR01313 therm_gnt_kin carboh 96.3 0.0041 1.1E-07 39.0 3.6 105 67-175 1-116 (175)
253 PRK11331 5-methylcytosine-spec 96.3 0.0038 9.7E-08 39.3 3.4 25 64-88 194-218 (459)
254 cd03294 ABC_Pro_Gly_Bertaine T 96.3 0.0033 8.5E-08 39.6 3.1 25 63-87 49-73 (269)
255 TIGR02142 modC_ABC molybdate A 96.3 0.0022 5.6E-08 40.7 2.1 26 62-87 20-46 (361)
256 cd03300 ABC_PotA_N PotA is an 96.3 0.0038 9.7E-08 39.3 3.4 25 63-87 25-49 (232)
257 TIGR02868 CydC ABC transporter 96.3 0.0035 8.8E-08 39.5 3.1 26 62-87 385-410 (566)
258 TIGR02528 EutP ethanolamine ut 96.3 0.011 2.9E-07 36.4 5.7 109 65-190 1-120 (144)
259 TIGR03258 PhnT 2-aminoethylpho 96.3 0.0037 9.4E-08 39.3 3.3 26 62-87 29-54 (362)
260 TIGR02324 CP_lyasePhnL phospho 96.3 0.0035 9.1E-08 39.4 3.1 26 63-88 33-58 (224)
261 COG0563 Adk Adenylate kinase a 96.3 0.03 7.7E-07 33.7 7.8 29 66-94 2-30 (178)
262 PRK13900 type IV secretion sys 96.3 0.034 8.8E-07 33.4 8.1 27 63-89 159-185 (332)
263 cd03292 ABC_FtsE_transporter F 96.3 0.004 1E-07 39.1 3.3 26 62-87 25-50 (214)
264 COG4525 TauB ABC-type taurine 96.3 0.0041 1E-07 39.1 3.3 26 62-87 29-54 (259)
265 COG5192 BMS1 GTP-binding prote 96.3 0.016 4.1E-07 35.4 6.3 98 65-162 69-193 (1077)
266 cd01368 KISc_KIF23_like Kinesi 96.3 0.0046 1.2E-07 38.7 3.5 46 37-82 56-107 (345)
267 PRK00889 adenylylsulfate kinas 96.2 0.011 2.9E-07 36.4 5.4 109 64-180 4-116 (175)
268 TIGR03415 ABC_choXWV_ATP choli 96.2 0.0046 1.2E-07 38.8 3.3 43 44-86 9-72 (382)
269 PRK13949 shikimate kinase; Pro 96.2 0.028 7.2E-07 33.9 7.3 103 65-181 2-111 (169)
270 cd03297 ABC_ModC_molybdenum_tr 96.2 0.0047 1.2E-07 38.7 3.3 25 63-87 22-46 (214)
271 cd03229 ABC_Class3 This class 96.2 0.0049 1.3E-07 38.6 3.4 25 63-87 25-49 (178)
272 PRK13894 conjugal transfer ATP 96.2 0.062 1.6E-06 31.8 9.0 54 34-88 119-173 (320)
273 COG1126 GlnQ ABC-type polar am 96.2 0.0049 1.3E-07 38.6 3.3 24 63-86 27-50 (240)
274 PRK06762 hypothetical protein; 96.2 0.014 3.6E-07 35.7 5.6 151 64-221 2-160 (166)
275 cd03299 ABC_ModC_like Archeal 96.2 0.0048 1.2E-07 38.6 3.2 25 63-87 24-48 (235)
276 PRK11432 fbpC ferric transport 96.2 0.0043 1.1E-07 38.9 3.0 26 62-87 30-55 (351)
277 PTZ00088 adenylate kinase 1; P 96.2 0.063 1.6E-06 31.7 8.9 114 66-184 2-126 (225)
278 TIGR01189 ccmA heme ABC export 96.1 0.0049 1.2E-07 38.6 3.1 24 63-86 25-48 (204)
279 cd03256 ABC_PhnC_transporter A 96.1 0.0055 1.4E-07 38.3 3.3 26 62-87 25-50 (241)
280 cd03296 ABC_CysA_sulfate_impor 96.1 0.0054 1.4E-07 38.3 3.2 25 63-87 27-51 (239)
281 cd03298 ABC_ThiQ_thiamine_tran 96.1 0.0055 1.4E-07 38.3 3.3 26 62-87 22-47 (211)
282 TIGR01448 recD_rel helicase, R 96.1 0.0086 2.2E-07 37.1 4.3 160 63-226 364-584 (769)
283 pfam08298 AAA_PrkA PrkA AAA do 96.1 0.014 3.6E-07 35.7 5.3 59 29-90 45-111 (358)
284 PRK05818 DNA polymerase III su 96.1 0.066 1.7E-06 31.6 8.7 168 63-242 7-215 (262)
285 TIGR03238 dnd_assoc_3 dnd syst 96.1 0.011 2.9E-07 36.3 4.7 35 54-88 20-56 (504)
286 COG1618 Predicted nucleotide k 96.0 0.044 1.1E-06 32.7 7.7 107 66-176 7-165 (179)
287 TIGR00954 3a01203 Peroxysomal 96.0 0.0064 1.6E-07 37.9 3.4 29 59-87 551-579 (788)
288 COG1118 CysA ABC-type sulfate/ 96.0 0.0061 1.6E-07 38.0 3.3 24 63-86 27-50 (345)
289 PRK11248 tauB taurine transpor 96.0 0.006 1.5E-07 38.0 3.2 26 62-87 25-50 (255)
290 PRK10247 putative ABC transpor 96.0 0.0067 1.7E-07 37.7 3.5 26 62-87 31-56 (225)
291 PRK00279 adk adenylate kinase; 96.0 0.0082 2.1E-07 37.2 3.9 31 67-97 3-33 (215)
292 cd02028 UMPK_like Uridine mono 96.0 0.0028 7.1E-08 40.1 1.5 24 67-90 2-25 (179)
293 cd03257 ABC_NikE_OppD_transpor 96.0 0.0065 1.6E-07 37.8 3.3 26 62-87 29-54 (228)
294 cd00106 KISc Kinesin motor dom 96.0 0.0062 1.6E-07 37.9 3.2 47 36-82 45-97 (328)
295 PRK10070 glycine betaine trans 96.0 0.0066 1.7E-07 37.8 3.2 43 44-86 13-76 (400)
296 TIGR01187 potA polyamine ABC t 96.0 0.0036 9.1E-08 39.4 1.9 18 69-86 1-18 (331)
297 COG3284 AcoR Transcriptional a 96.0 0.13 3.4E-06 29.8 11.4 178 43-223 316-540 (606)
298 cd01367 KISc_KIF2_like Kinesin 96.0 0.0067 1.7E-07 37.7 3.2 48 35-82 50-103 (322)
299 PRK08699 DNA polymerase III su 96.0 0.05 1.3E-06 32.4 7.6 25 63-87 20-44 (325)
300 TIGR00968 3a0106s01 sulfate AB 96.0 0.0062 1.6E-07 37.9 3.0 24 63-86 25-48 (241)
301 PRK11144 modC molybdate transp 95.9 0.0074 1.9E-07 37.5 3.3 25 63-87 23-47 (352)
302 pfam06309 Torsin Torsin. This 95.9 0.014 3.6E-07 35.7 4.8 48 40-87 23-76 (127)
303 cd02027 APSK Adenosine 5'-phos 95.9 0.015 3.7E-07 35.7 4.8 105 66-178 1-111 (149)
304 cd03295 ABC_OpuCA_Osmoprotecti 95.9 0.0074 1.9E-07 37.5 3.2 25 63-87 26-50 (242)
305 cd03261 ABC_Org_Solvent_Resist 95.9 0.0078 2E-07 37.3 3.4 26 62-87 24-49 (235)
306 PRK10851 sulfate/thiosulfate t 95.9 0.0074 1.9E-07 37.5 3.2 26 62-87 26-51 (352)
307 cd01370 KISc_KIP3_like Kinesin 95.9 0.0069 1.8E-07 37.6 3.0 48 35-82 53-106 (338)
308 cd03293 ABC_NrtD_SsuB_transpor 95.9 0.0078 2E-07 37.3 3.3 26 62-87 28-53 (220)
309 PRK12289 ribosome-associated G 95.9 0.0085 2.2E-07 37.1 3.5 47 39-87 148-194 (351)
310 cd03260 ABC_PstB_phosphate_tra 95.9 0.0087 2.2E-07 37.0 3.5 26 62-87 24-49 (227)
311 TIGR00382 clpX ATP-dependent C 95.9 0.0071 1.8E-07 37.6 3.0 193 26-218 85-418 (452)
312 TIGR02788 VirB11 P-type DNA tr 95.9 0.014 3.5E-07 35.8 4.5 27 63-89 157-183 (328)
313 cd00983 recA RecA is a bacter 95.9 0.039 9.9E-07 33.0 6.8 95 49-145 39-140 (325)
314 pfam07724 AAA_2 AAA domain (Cd 95.8 0.0087 2.2E-07 37.0 3.4 27 63-89 2-28 (168)
315 cd03258 ABC_MetN_methionine_tr 95.8 0.0075 1.9E-07 37.4 3.0 24 63-86 30-53 (233)
316 pfam07693 KAP_NTPase KAP famil 95.8 0.018 4.5E-07 35.1 4.9 24 65-88 21-44 (301)
317 PRK09452 potA putrescine/sperm 95.8 0.0086 2.2E-07 37.1 3.3 26 62-87 41-66 (378)
318 cd03223 ABCD_peroxisomal_ALDP 95.8 0.0079 2E-07 37.3 3.1 26 62-87 25-50 (166)
319 PRK13764 ATPase; Provisional 95.8 0.01 2.7E-07 36.5 3.7 46 37-89 239-284 (605)
320 pfam01583 APS_kinase Adenylyls 95.8 0.0081 2.1E-07 37.2 3.1 106 65-178 3-114 (157)
321 PRK11650 ugpC glycerol-3-phosp 95.8 0.0085 2.2E-07 37.1 3.2 26 62-87 28-53 (358)
322 pfam02562 PhoH PhoH-like prote 95.8 0.016 4E-07 35.4 4.6 32 50-86 10-41 (205)
323 cd01372 KISc_KIF4 Kinesin moto 95.8 0.0055 1.4E-07 38.3 2.2 50 33-82 37-92 (341)
324 TIGR03574 selen_PSTK L-seryl-t 95.8 0.066 1.7E-06 31.6 7.7 22 67-88 2-23 (249)
325 PRK11000 maltose/maltodextrin 95.8 0.0086 2.2E-07 37.0 3.2 26 62-87 27-52 (369)
326 PRK13833 conjugal transfer pro 95.8 0.0089 2.3E-07 37.0 3.3 53 35-88 115-168 (323)
327 TIGR02322 phosphon_PhnN phosph 95.8 0.014 3.6E-07 35.7 4.3 132 64-210 1-148 (183)
328 COG0606 Predicted ATPase with 95.8 0.013 3.4E-07 35.9 4.1 35 48-83 183-217 (490)
329 TIGR02315 ABC_phnC phosphonate 95.8 0.0076 1.9E-07 37.4 2.9 25 62-86 26-50 (253)
330 TIGR01842 type_I_sec_PrtD type 95.8 0.0059 1.5E-07 38.1 2.3 89 6-96 291-392 (556)
331 cd01373 KISc_KLP2_like Kinesin 95.8 0.0068 1.7E-07 37.7 2.6 54 29-82 34-93 (337)
332 TIGR00618 sbcc exonuclease Sbc 95.8 0.0084 2.1E-07 37.1 3.1 25 63-87 29-53 (1063)
333 PRK13543 cytochrome c biogenes 95.8 0.011 2.8E-07 36.4 3.6 26 62-87 35-60 (214)
334 cd03290 ABCC_SUR1_N The SUR do 95.8 0.0098 2.5E-07 36.7 3.4 27 62-88 25-51 (218)
335 cd03231 ABC_CcmA_heme_exporter 95.8 0.01 2.6E-07 36.6 3.5 26 62-87 24-49 (201)
336 PRK11629 lolD lipoprotein tran 95.8 0.0099 2.5E-07 36.7 3.4 26 62-87 33-58 (233)
337 cd01376 KISc_KID_like Kinesin 95.8 0.0076 1.9E-07 37.4 2.8 47 36-82 47-99 (319)
338 KOG0060 consensus 95.7 0.0095 2.4E-07 36.8 3.2 25 63-87 460-484 (659)
339 COG4619 ABC-type uncharacteriz 95.7 0.0099 2.5E-07 36.7 3.3 25 63-87 28-52 (223)
340 cd03234 ABCG_White The White s 95.7 0.0099 2.5E-07 36.7 3.3 26 62-87 31-56 (226)
341 PRK10584 putative ABC transpor 95.7 0.01 2.6E-07 36.6 3.2 26 62-87 34-59 (228)
342 cd01375 KISc_KIF9_like Kinesin 95.7 0.0076 1.9E-07 37.4 2.5 47 37-83 49-100 (334)
343 TIGR01618 phage_P_loop phage n 95.7 0.013 3.3E-07 36.0 3.7 150 58-215 7-225 (229)
344 KOG3347 consensus 95.7 0.023 6E-07 34.4 5.0 38 65-102 8-45 (176)
345 cd03251 ABCC_MsbA MsbA is an e 95.7 0.011 2.9E-07 36.3 3.4 27 62-88 26-52 (234)
346 PRK05703 flhF flagellar biosyn 95.6 0.026 6.6E-07 34.1 5.1 22 64-85 210-231 (412)
347 PRK13808 adenylate kinase; Pro 95.6 0.18 4.6E-06 28.9 9.5 119 66-188 2-131 (297)
348 pfam02367 UPF0079 Uncharacteri 95.6 0.029 7.4E-07 33.8 5.4 39 50-90 3-41 (123)
349 cd03253 ABCC_ATM1_transporter 95.6 0.011 2.8E-07 36.4 3.2 26 62-87 25-50 (236)
350 COG3265 GntK Gluconate kinase 95.6 0.057 1.5E-06 32.0 6.8 76 71-147 2-77 (161)
351 COG0194 Gmk Guanylate kinase [ 95.6 0.0088 2.2E-07 37.0 2.6 117 63-185 3-135 (191)
352 pfam00225 Kinesin Kinesin moto 95.6 0.0079 2E-07 37.3 2.4 48 35-82 39-92 (321)
353 PRK13648 cbiO cobalt transport 95.6 0.013 3.3E-07 35.9 3.5 25 63-87 34-58 (269)
354 PRK13768 GTPase; Provisional 95.6 0.0059 1.5E-07 38.1 1.7 24 66-89 4-27 (253)
355 PRK10419 nikE nickel transport 95.6 0.012 3.1E-07 36.1 3.3 27 61-87 35-61 (266)
356 TIGR01193 bacteriocin_ABC ABC- 95.6 0.012 3.2E-07 36.1 3.3 70 10-88 452-524 (710)
357 TIGR00960 3a0501s02 Type II (G 95.6 0.014 3.6E-07 35.8 3.5 25 63-87 28-52 (216)
358 pfam00485 PRK Phosphoribulokin 95.6 0.011 2.7E-07 36.5 2.9 26 67-92 2-27 (196)
359 TIGR02525 plasmid_TraJ plasmid 95.6 0.0099 2.5E-07 36.7 2.7 27 66-92 151-177 (374)
360 TIGR02237 recomb_radB DNA repa 95.6 0.007 1.8E-07 37.6 2.0 61 125-187 137-206 (223)
361 PRK09361 radB DNA repair and r 95.6 0.014 3.7E-07 35.7 3.6 23 63-85 22-44 (224)
362 cd01365 KISc_KIF1A_KIF1B Kines 95.6 0.015 3.8E-07 35.6 3.6 35 48-82 68-107 (356)
363 PRK10246 exonuclease subunit S 95.5 0.014 3.6E-07 35.7 3.5 25 63-87 29-53 (1047)
364 cd01374 KISc_CENP_E Kinesin mo 95.5 0.0099 2.5E-07 36.7 2.7 48 35-82 39-92 (321)
365 PRK13948 shikimate kinase; Pro 95.5 0.018 4.5E-07 35.2 3.9 35 62-96 8-42 (182)
366 TIGR02211 LolD_lipo_ex lipopro 95.5 0.012 3E-07 36.3 3.0 24 63-86 30-53 (221)
367 KOG0242 consensus 95.5 0.0092 2.4E-07 36.9 2.4 50 35-84 52-107 (675)
368 cd03246 ABCC_Protease_Secretio 95.5 0.014 3.6E-07 35.7 3.4 27 62-88 26-52 (173)
369 cd03254 ABCC_Glucan_exporter_l 95.5 0.014 3.6E-07 35.7 3.4 27 62-88 27-53 (229)
370 PRK13538 cytochrome c biogenes 95.5 0.015 3.8E-07 35.6 3.5 26 62-87 25-50 (204)
371 PRK00098 ribosome-associated G 95.5 0.013 3.3E-07 35.9 3.2 47 39-87 141-187 (298)
372 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.5 0.013 3.4E-07 35.9 3.3 25 63-87 29-53 (218)
373 PRK10789 putative multidrug tr 95.5 0.016 4.2E-07 35.3 3.7 49 39-88 317-365 (569)
374 TIGR00017 cmk cytidylate kinas 95.5 0.017 4.3E-07 35.2 3.8 117 67-193 5-130 (223)
375 pfam00406 ADK Adenylate kinase 95.5 0.053 1.4E-06 32.2 6.3 114 69-185 1-123 (186)
376 cd03233 ABC_PDR_domain1 The pl 95.5 0.014 3.5E-07 35.8 3.3 27 62-88 31-57 (202)
377 PRK11160 cysteine/glutathione 95.5 0.014 3.6E-07 35.7 3.3 27 62-88 365-391 (575)
378 PRK01889 ribosome-associated G 95.5 0.017 4.2E-07 35.3 3.6 48 39-87 170-217 (353)
379 PRK13540 cytochrome c biogenes 95.5 0.016 4.1E-07 35.4 3.5 27 62-88 25-51 (200)
380 cd03249 ABC_MTABC3_MDL1_MDL2 M 95.5 0.015 3.9E-07 35.5 3.5 27 62-88 27-53 (238)
381 TIGR02533 type_II_gspE general 95.5 0.03 7.6E-07 33.7 4.9 37 53-89 234-270 (495)
382 cd03250 ABCC_MRP_domain1 Domai 95.5 0.014 3.5E-07 35.8 3.2 26 62-87 29-54 (204)
383 pfam03193 DUF258 Protein of un 95.4 0.017 4.2E-07 35.3 3.6 46 40-87 13-58 (161)
384 PRK10436 hypothetical protein; 95.4 0.038 9.6E-07 33.1 5.4 50 37-89 191-240 (461)
385 pfam02456 Adeno_IVa2 Adenoviru 95.4 0.011 2.7E-07 36.5 2.6 18 67-84 90-107 (370)
386 PRK10908 cell division protein 95.4 0.014 3.5E-07 35.8 3.1 26 62-87 26-51 (222)
387 pfam00154 RecA recA bacterial 95.4 0.06 1.5E-06 31.9 6.3 94 48-143 35-135 (322)
388 PRK11264 putative amino-acid A 95.4 0.017 4.3E-07 35.2 3.5 25 62-86 25-49 (248)
389 PRK03846 adenylylsulfate kinas 95.4 0.017 4.3E-07 35.3 3.5 109 63-179 23-137 (198)
390 PRK13544 consensus 95.4 0.017 4.2E-07 35.3 3.4 26 62-87 25-50 (208)
391 TIGR02857 CydD ABC transporter 95.4 0.015 3.7E-07 35.6 3.1 60 26-87 339-401 (570)
392 cd01369 KISc_KHC_KIF5 Kinesin 95.4 0.015 3.9E-07 35.5 3.2 47 36-82 43-95 (325)
393 PRK13539 cytochrome c biogenes 95.4 0.017 4.4E-07 35.2 3.4 26 62-87 26-51 (206)
394 COG1124 DppF ABC-type dipeptid 95.4 0.017 4.3E-07 35.3 3.4 25 62-86 31-55 (252)
395 cd03278 ABC_SMC_barmotin Barmo 95.4 0.018 4.5E-07 35.2 3.4 24 63-86 21-44 (197)
396 cd03245 ABCC_bacteriocin_expor 95.4 0.016 4.2E-07 35.3 3.3 27 62-88 28-54 (220)
397 cd01854 YjeQ_engC YjeQ/EngC. 95.3 0.021 5.4E-07 34.7 3.8 49 38-88 137-185 (287)
398 PRK07667 uridine kinase; Provi 95.3 0.025 6.5E-07 34.2 4.2 31 61-91 9-41 (190)
399 cd03247 ABCC_cytochrome_bd The 95.3 0.018 4.5E-07 35.1 3.4 28 62-89 26-53 (178)
400 cd01364 KISc_BimC_Eg5 Kinesin 95.3 0.013 3.2E-07 36.0 2.7 48 35-82 47-100 (352)
401 cd03226 ABC_cobalt_CbiO_domain 95.3 0.019 4.8E-07 35.0 3.5 26 62-87 24-49 (205)
402 pfam01078 Mg_chelatase Magnesi 95.3 0.02 5.1E-07 34.8 3.7 36 50-86 9-44 (207)
403 CHL00131 ycf16 sulfate ABC tra 95.3 0.017 4.3E-07 35.3 3.3 26 61-86 29-54 (252)
404 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.3 0.018 4.6E-07 35.1 3.4 27 62-88 24-50 (144)
405 cd01394 radB RadB. The archaea 95.3 0.014 3.5E-07 35.8 2.7 24 63-86 18-41 (218)
406 PRK09493 glnQ glutamine ABC tr 95.3 0.019 4.7E-07 35.0 3.4 26 62-87 25-50 (240)
407 TIGR00955 3a01204 Pigment prec 95.3 0.016 4E-07 35.5 3.0 73 127-206 215-291 (671)
408 PRK10744 phosphate transporter 95.3 0.02 5.1E-07 34.8 3.5 26 62-87 34-59 (257)
409 cd03248 ABCC_TAP TAP, the Tran 95.3 0.018 4.7E-07 35.0 3.3 27 62-88 38-64 (226)
410 pfam08423 Rad51 Rad51. Rad51 i 95.3 0.013 3.3E-07 36.0 2.5 22 64-85 43-64 (261)
411 cd03213 ABCG_EPDR ABCG transpo 95.2 0.018 4.5E-07 35.2 3.2 25 62-86 33-57 (194)
412 PRK11701 phnK phosphonates tra 95.2 0.02 5E-07 34.8 3.4 26 62-87 30-55 (258)
413 cd02023 UMPK Uridine monophosp 95.2 0.02 5.1E-07 34.8 3.4 24 67-90 2-25 (198)
414 PRK05541 adenylylsulfate kinas 95.2 0.022 5.5E-07 34.6 3.6 106 63-178 6-116 (176)
415 COG2804 PulE Type II secretory 95.2 0.042 1.1E-06 32.8 5.1 49 38-89 235-283 (500)
416 PRK13635 cbiO cobalt transport 95.2 0.019 4.8E-07 35.0 3.3 26 62-87 31-56 (279)
417 TIGR02974 phageshock_pspF psp 95.2 0.25 6.4E-06 28.0 9.6 174 44-219 1-229 (349)
418 COG1341 Predicted GTPase or GT 95.2 0.043 1.1E-06 32.8 5.1 64 25-92 29-101 (398)
419 pfam10662 PduV-EutP Ethanolami 95.2 0.069 1.8E-06 31.5 6.2 115 66-191 3-120 (143)
420 COG1120 FepC ABC-type cobalami 95.2 0.021 5.2E-07 34.7 3.4 25 63-87 27-51 (258)
421 PRK11124 artP arginine transpo 95.2 0.02 5.2E-07 34.8 3.4 25 62-86 26-50 (242)
422 COG1125 OpuBA ABC-type proline 95.2 0.018 4.5E-07 35.1 3.1 24 63-86 26-49 (309)
423 KOG4280 consensus 95.2 0.019 4.8E-07 35.0 3.2 48 35-82 51-104 (574)
424 PRK10536 hypothetical protein; 95.2 0.037 9.4E-07 33.2 4.7 54 132-185 198-257 (262)
425 cd01129 PulE-GspE PulE/GspE Th 95.2 0.052 1.3E-06 32.3 5.5 50 37-89 56-105 (264)
426 cd03214 ABC_Iron-Siderophores_ 95.2 0.022 5.6E-07 34.6 3.5 27 62-88 23-49 (180)
427 PRK10771 thiQ thiamine transpo 95.2 0.021 5.5E-07 34.6 3.5 29 59-87 20-48 (233)
428 smart00129 KISc Kinesin motor, 95.2 0.017 4.2E-07 35.3 2.9 47 36-82 46-98 (335)
429 COG1162 Predicted GTPases [Gen 95.2 0.024 6.1E-07 34.3 3.7 121 38-181 140-272 (301)
430 TIGR02546 III_secr_ATP type II 95.2 0.012 3E-07 36.2 2.1 42 51-92 139-181 (430)
431 PRK13547 hmuV hemin importer A 95.2 0.02 5E-07 34.8 3.2 27 62-88 25-51 (273)
432 PRK13541 cytochrome c biogenes 95.2 0.021 5.4E-07 34.6 3.4 26 62-87 24-49 (195)
433 PRK11607 potG putrescine trans 95.2 0.019 4.8E-07 35.0 3.1 26 62-87 43-68 (377)
434 COG2842 Uncharacterized ATPase 95.2 0.26 6.7E-06 27.9 12.8 201 33-238 64-295 (297)
435 PRK13634 cbiO cobalt transport 95.2 0.019 4.8E-07 35.0 3.1 25 62-86 18-42 (276)
436 PTZ00301 uridine kinase; Provi 95.1 0.12 3E-06 30.1 7.1 23 66-88 5-27 (210)
437 PRK13657 cyclic beta-1,2-gluca 95.1 0.024 6E-07 34.4 3.6 28 61-88 358-385 (585)
438 cd01371 KISc_KIF3 Kinesin moto 95.1 0.015 3.8E-07 35.6 2.5 47 36-82 48-100 (333)
439 PRK11831 putative ABC transpor 95.1 0.02 5.2E-07 34.7 3.2 26 62-87 32-57 (269)
440 cd02020 CMPK Cytidine monophos 95.1 0.021 5.4E-07 34.7 3.3 32 67-98 2-33 (147)
441 cd03228 ABCC_MRP_Like The MRP 95.1 0.022 5.5E-07 34.6 3.4 27 62-88 26-52 (171)
442 PRK13542 consensus 95.1 0.024 6.1E-07 34.3 3.5 26 62-87 42-67 (224)
443 cd01123 Rad51_DMC1_radA Rad51_ 95.1 0.029 7.4E-07 33.8 3.9 30 56-85 8-40 (235)
444 COG2884 FtsE Predicted ATPase 95.1 0.023 6E-07 34.4 3.4 27 62-88 26-52 (223)
445 PRK13637 cbiO cobalt transport 95.1 0.02 5E-07 34.9 3.0 25 62-86 31-55 (287)
446 cd03236 ABC_RNaseL_inhibitor_d 95.1 0.022 5.7E-07 34.5 3.3 26 62-87 24-49 (255)
447 PRK10619 histidine/lysine/argi 95.1 0.023 5.9E-07 34.4 3.4 25 62-86 29-53 (257)
448 cd04155 Arl3 Arl3 subfamily. 95.1 0.011 2.9E-07 36.3 1.7 37 53-89 2-39 (173)
449 cd03237 ABC_RNaseL_inhibitor_d 95.1 0.022 5.6E-07 34.5 3.2 25 63-87 24-48 (246)
450 PRK03839 putative kinase; Prov 95.1 0.028 7.1E-07 33.9 3.7 31 67-97 3-33 (180)
451 cd01366 KISc_C_terminal Kinesi 95.1 0.017 4.2E-07 35.3 2.6 48 35-82 44-96 (329)
452 PRK10522 multidrug transporter 95.0 0.021 5.4E-07 34.7 3.1 27 62-88 347-373 (547)
453 smart00763 AAA_PrkA PrkA AAA d 95.0 0.036 9.3E-07 33.2 4.3 35 54-88 65-102 (361)
454 TIGR01420 pilT_fam twitching m 95.0 0.036 9.1E-07 33.2 4.2 37 56-92 119-155 (350)
455 PRK11247 ssuB aliphatic sulfon 95.0 0.022 5.6E-07 34.5 3.1 26 62-87 36-61 (257)
456 PRK10646 putative ATPase; Prov 95.0 0.077 2E-06 31.2 5.9 27 63-89 27-53 (153)
457 cd03289 ABCC_CFTR2 The CFTR su 95.0 0.026 6.6E-07 34.1 3.5 26 62-87 28-53 (275)
458 PRK10790 putative multidrug tr 95.0 0.029 7.5E-07 33.8 3.7 27 62-88 365-391 (593)
459 COG1241 MCM2 Predicted ATPase 95.0 0.13 3.4E-06 29.7 7.1 178 66-243 321-593 (682)
460 COG0419 SbcC ATPase involved i 95.0 0.025 6.5E-07 34.2 3.4 25 63-87 24-48 (908)
461 COG4133 CcmA ABC-type transpor 95.0 0.025 6.4E-07 34.2 3.4 24 63-86 27-50 (209)
462 PRK12288 ribosome-associated G 95.0 0.024 6E-07 34.4 3.2 45 41-87 186-230 (344)
463 PRK03918 chromosome segregatio 95.0 0.025 6.4E-07 34.2 3.3 23 64-86 23-45 (882)
464 cd03225 ABC_cobalt_CbiO_domain 95.0 0.027 6.8E-07 34.0 3.5 26 62-87 25-50 (211)
465 COG0572 Udk Uridine kinase [Nu 95.0 0.083 2.1E-06 31.0 6.0 130 67-202 11-166 (218)
466 PRK10575 iron-hydroxamate tran 95.0 0.026 6.6E-07 34.1 3.4 26 62-87 35-60 (265)
467 PRK09580 sufC cysteine desulfu 95.0 0.027 6.8E-07 34.0 3.4 26 62-87 25-50 (248)
468 cd03232 ABC_PDR_domain2 The pl 95.0 0.025 6.3E-07 34.2 3.2 25 62-86 31-55 (192)
469 PRK13642 cbiO cobalt transport 95.0 0.025 6.3E-07 34.3 3.2 26 62-87 31-56 (277)
470 COG1102 Cmk Cytidylate kinase 94.9 0.023 5.9E-07 34.4 3.1 32 67-98 3-34 (179)
471 cd03240 ABC_Rad50 The catalyti 94.9 0.026 6.7E-07 34.1 3.4 25 63-87 21-45 (204)
472 COG0324 MiaA tRNA delta(2)-iso 94.9 0.027 6.9E-07 34.0 3.4 33 64-96 3-35 (308)
473 COG4088 Predicted nucleotide k 94.9 0.12 3.2E-06 29.9 6.8 23 65-87 2-24 (261)
474 cd03288 ABCC_SUR2 The SUR doma 94.9 0.028 7E-07 33.9 3.4 27 62-88 45-71 (257)
475 PRK06217 hypothetical protein; 94.9 0.029 7.5E-07 33.8 3.6 156 65-245 2-180 (185)
476 PRK13640 cbiO cobalt transport 94.9 0.026 6.5E-07 34.1 3.2 25 62-86 32-56 (283)
477 PRK09354 recA recombinase A; P 94.9 0.083 2.1E-06 31.0 5.8 92 46-139 41-139 (350)
478 PRK11174 cysteine/glutathione 94.9 0.03 7.6E-07 33.7 3.5 28 60-87 372-399 (588)
479 cd03369 ABCC_NFT1 Domain 2 of 94.9 0.035 8.9E-07 33.3 3.9 28 62-89 32-59 (207)
480 PRK13650 cbiO cobalt transport 94.9 0.026 6.7E-07 34.1 3.2 26 62-87 28-53 (276)
481 cd03244 ABCC_MRP_domain2 Domai 94.9 0.03 7.5E-07 33.8 3.5 27 62-88 28-54 (221)
482 cd03291 ABCC_CFTR1 The CFTR su 94.9 0.028 7.1E-07 33.9 3.4 26 62-87 61-86 (282)
483 COG4107 PhnK ABC-type phosphon 94.9 0.025 6.4E-07 34.2 3.1 29 59-87 27-55 (258)
484 PRK13632 cbiO cobalt transport 94.9 0.028 7.1E-07 33.9 3.3 26 62-87 34-59 (273)
485 PRK13633 cobalt transporter AT 94.9 0.028 7.2E-07 33.9 3.3 25 62-86 35-59 (281)
486 COG3911 Predicted ATPase [Gene 94.8 0.027 6.8E-07 34.0 3.1 30 65-94 10-39 (183)
487 PRK13548 hmuV hemin importer A 94.8 0.031 7.8E-07 33.7 3.4 26 62-87 26-51 (257)
488 PRK13646 cbiO cobalt transport 94.8 0.03 7.7E-07 33.7 3.4 24 63-86 32-55 (286)
489 PRK00625 shikimate kinase; Pro 94.8 0.035 8.8E-07 33.3 3.7 31 67-97 3-33 (173)
490 PRK05480 uridine kinase; Provi 94.8 0.11 2.8E-06 30.3 6.2 24 67-90 9-32 (209)
491 TIGR03375 type_I_sec_LssB type 94.8 0.024 6.2E-07 34.3 2.9 50 37-87 463-514 (694)
492 PRK11176 lipid transporter ATP 94.8 0.026 6.6E-07 34.1 3.0 28 62-89 366-393 (581)
493 cd01120 RecA-like_NTPases RecA 94.8 0.03 7.8E-07 33.7 3.3 22 67-88 2-23 (165)
494 KOG2680 consensus 94.8 0.27 6.9E-06 27.8 8.1 111 126-239 304-426 (454)
495 TIGR00929 VirB4_CagE type IV s 94.8 0.027 6.8E-07 34.0 3.0 26 64-89 516-541 (931)
496 COG1219 ClpX ATP-dependent pro 94.7 0.03 7.5E-07 33.8 3.1 60 30-89 49-122 (408)
497 cd02024 NRK1 Nicotinamide ribo 94.7 0.027 6.8E-07 34.0 2.9 25 67-91 2-26 (187)
498 PRK13644 cbiO cobalt transport 94.7 0.034 8.6E-07 33.4 3.4 25 62-86 26-50 (274)
499 PRK13647 cbiO cobalt transport 94.7 0.032 8.2E-07 33.5 3.3 26 62-87 29-54 (273)
500 PRK09544 znuC high-affinity zi 94.7 0.035 9E-07 33.3 3.5 26 62-87 28-53 (251)
No 1
>PRK09087 hypothetical protein; Validated
Probab=100.00 E-value=0 Score=409.59 Aligned_cols=224 Identities=49% Similarity=0.790 Sum_probs=210.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 81034155888776688454165361899999998510167884999878777868899999986276201356764445
Q gi|254780567|r 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 (246)
Q Consensus 23 ~~~~Ql~l~~~~~~~~~~dnFiv~~~N~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~ 102 (246)
..++||+|||+.++.+++||||||++|+.|++++++|++|+.+.+|||||+|||||||+++|+++.++.++.........
T Consensus 3 ~~p~QL~l~l~~~~~~~~dnF~vs~~N~~a~~~l~~~~~w~~~~~~L~Gp~gsGKTHL~~~~~~~~~a~~~~~~~~~~~~ 82 (226)
T PRK09087 3 DAPRQLPLNFSHQPGYGRDDLVVTESNRAAVSLVDRWPNWPSPVVVLAGPVGSGKTHLASIWREKADALLVHPNEIGSDA 82 (226)
T ss_pred CCCCCEEECCCCCCCCCCCCEEECCCHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEECHHHCCHHH
T ss_conf 99861455899987787336477576999999998472677775899899999886999999998099683668747466
Q ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHH
Q ss_conf 46666665334332100376103354555431123421564035432002234566788521222450788978999999
Q gi|254780567|r 103 ILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 (246)
Q Consensus 103 ~~~~~~~~i~iddi~~~~~~ee~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il 182 (246)
........+++||++....+|+.|||+||.+.+++++++++|+.+|.+|++.++||+|||+||++++|++|||+++.++|
T Consensus 83 ~~~~~~~~~~idd~d~~~~dEe~LFhl~N~~~~~~~~LLlts~~~p~~l~~~L~DL~SRL~~~~~~~I~~pdD~ll~~~L 162 (226)
T PRK09087 83 ANAAAERPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSAWNVKLPDLKSRLKAATVVEIGEPDDALLSGVI 162 (226)
T ss_pred HHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHCCCCCHHHHHHHHCCEEEEECCCCHHHHHHHH
T ss_conf 76532798899748777747899999999998539879998898956667624689999857857983599989999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC
Q ss_conf 9986662897988999999940667989999999999999998477878899999998674188
Q gi|254780567|r 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 (246)
Q Consensus 183 ~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~ITi~lvk~vL~~~~~~d 246 (246)
.+++.+||+.++++|++||++|++||+.++..++++||++|++.||+||+|+||+||+++-+++
T Consensus 163 ~k~~~~r~l~l~~~v~~yll~r~~Rs~~~l~~~l~~LD~~SL~~kr~ITiplikevL~~l~~~~ 226 (226)
T PRK09087 163 FKLFADRQLYVEPHVVYYLVSRMERSLFAAQTIVERLDRLALERKSRITRALAAEVLNEMGQAE 226 (226)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCC
T ss_conf 9998757657888899999984588999999999999999998189998999999998511379
No 2
>PRK08084 DNA replication initiation factor; Provisional
Probab=100.00 E-value=0 Score=382.06 Aligned_cols=220 Identities=17% Similarity=0.180 Sum_probs=197.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC-----CHHH
Q ss_conf 34810341558887766884541653618999999985101678849998787778688999999862762-----0135
Q gi|254780567|r 21 PKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST-----RFSN 95 (246)
Q Consensus 21 ~~~~~~Ql~l~~~~~~~~~~dnFiv~~~N~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~-----~~~~ 95 (246)
++|.++||+||+.+++.++|||||+|++|+.+.++...|..|+++++||||++|+|||||+||+|++.... |+..
T Consensus 2 ~~n~P~QL~L~~~l~~~~tfdnFi~g~n~~~~~al~~~~~~~~~~~l~l~G~~G~GKTHLLqA~~~~~~~~~~~~~yl~~ 81 (235)
T PRK08084 2 SLNTPAQLSLPLYLPDDETFASFYPGDNDSLLAALQNVLRQEHSGYIYLWGREGAGRSHLLHAACAELSQRGDAVGYVPL 81 (235)
T ss_pred CCCCCCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEH
T ss_conf 98995520258999997663023448869999999999857898769998999988899999999999707985799877
Q ss_pred HH-HHH---HHHHHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHCCCC-CEEEEECCCCCCHHHHHHHHHHHHHHCCE
Q ss_conf 67-644---4546666665334332100376---1033545554311234-21564035432002234566788521222
Q gi|254780567|r 96 IA-KSL---DSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATV 167 (246)
Q Consensus 96 ~~-~~~---~~~~~~~~~~i~iddi~~~~~~---ee~lf~l~n~~~~~~~-~iilts~~~p~~~~~~l~DL~SRl~~g~~ 167 (246)
.. ... ........+.+|+||++.+.++ |+++||+||++.++++ ++|+||+.+|.++++.+|||+|||+||++
T Consensus 82 ~~~~~~~~~~l~~l~~~dll~iDDi~~i~g~~~~ee~lF~l~N~~~~~g~~~ll~ts~~~P~~l~~~l~DL~SRl~~g~~ 161 (235)
T PRK08084 82 DKRAWFVPEVLEGMEQLSLVCIDNIECIAGDELWEMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQI 161 (235)
T ss_pred HHHHHHHHHHHHHHHHCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHCCCCCHHHHHHHHCCCE
T ss_conf 98665179999876418989982745546997899999999999998489669996798824302312889999956972
Q ss_pred EEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 4507889789999999986662897988999999940667989999999999999998477878899999998
Q gi|254780567|r 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 (246)
Q Consensus 168 ~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~ITi~lvk~vL~ 240 (246)
++|++|||+++..+|++++.+||+.++++|++||++|++||++++++++++||++|+..||+||+|+||++|+
T Consensus 162 ~~i~~~dde~~~~iL~~~a~~rgl~l~~~V~~yl~~~~~R~~~~L~~~l~~Ld~~Sl~~kr~iTip~vkevL~ 234 (235)
T PRK08084 162 YKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDKASITAQRKLTIPFVKEILK 234 (235)
T ss_pred EEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHC
T ss_conf 7855999899999999999973999998999999986158899999999999999998199999999999965
No 3
>PRK06620 hypothetical protein; Validated
Probab=100.00 E-value=0 Score=373.77 Aligned_cols=209 Identities=27% Similarity=0.488 Sum_probs=192.4
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHCCCC-----CEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 341558887766884541653618999999985101678-----849998787778688999999862762013567644
Q gi|254780567|r 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS-----RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 (246)
Q Consensus 26 ~Ql~l~~~~~~~~~~dnFiv~~~N~~A~~~i~~~~~~~~-----~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~ 100 (246)
+||+|||+.+++|++||||||+||+.|++++++|++|++ +.++||||+|||||||+++|++..++.+.......
T Consensus 1 ~Ql~~~l~~~~~~~~~dF~vs~~N~~A~~~i~~wp~~~~~~~~~~~l~I~Gp~gSGKTHL~~i~~~~~~a~~~~~~~~~- 79 (214)
T PRK06620 1 QQYIFRFTTSSKYHPDEFIVSSSNDQAYNIIKNWQCMFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIKDIFFN- 79 (214)
T ss_pred CCEECCCCCCCCCCCCCEEECCCHHHHHHHHHHCHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEECHHHCC-
T ss_conf 9700279997778865868768699999999836302566865555999879999889999999998285881512145-
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHH
Q ss_conf 45466666653343321003761033545554311234215640354320022345667885212224507889789999
Q gi|254780567|r 101 DSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 (246)
Q Consensus 101 ~~~~~~~~~~i~iddi~~~~~~ee~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~ 180 (246)
.......+.+++||++. ..++.+||+||.+.+.++++++||+.+|.++ .++||+|||+|+++++|++|||+++.+
T Consensus 80 -~~~~~~~~~~iiddid~--~~e~~lfhlfN~~~~~~~~llits~~~p~~~--~L~DL~SRl~~~~~~~i~~PdD~l~~~ 154 (214)
T PRK06620 80 -EEILEKYNAFIIEDIEN--WQEPALLHIFNIINEKQKYLLLTSSDKSRNF--TLPDLSSRIKSVLSILLNSPDDELIKI 154 (214)
T ss_pred -HHHHHHCCCEEEECCCC--CCHHHHHHHHHHHHHCCCEEEEEECCCCCCC--CCCCHHHHHHCCCEEECCCCCHHHHHH
T ss_conf -87884379379846775--7467999999999715987999827985224--535789998546443326989899999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 999986662897988999999940667989999999999999998477878899999998
Q gi|254780567|r 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 (246)
Q Consensus 181 il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~ITi~lvk~vL~ 240 (246)
++.|++.+||+.++++|++||++|++||++++..++++||++|+++||+||+|+||++|.
T Consensus 155 ll~k~~~~r~i~i~~~vi~yl~~ri~Rs~~~l~~~v~~ld~~sl~~kr~Iti~likevL~ 214 (214)
T PRK06620 155 LIFKHFSISSVTISRQIIDFLLVNLPREYSKIIEILENINYFALISKRKITISLVKEVLN 214 (214)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHC
T ss_conf 999999986998875599999998517899999999999999998399988999999839
No 4
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=100.00 E-value=0 Score=371.46 Aligned_cols=213 Identities=22% Similarity=0.250 Sum_probs=186.9
Q ss_pred CCCCCCCCCCCCCCCCEEECCCHHHHHHHHHH-HHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC-----CHHHHHHHH
Q ss_conf 41558887766884541653618999999985-101678849998787778688999999862762-----013567644
Q gi|254780567|r 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDS-WPSWPSRVVILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSL 100 (246)
Q Consensus 27 Ql~l~~~~~~~~~~dnFiv~~~N~~A~~~i~~-~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~-----~~~~~~~~~ 100 (246)
||+||+++++.++|||||+|+ |..|+.++.+ |+.|+.+++|||||+|||||||+++||++.... |+.......
T Consensus 1 QL~l~~~l~~~~tfdnFi~~~-N~~~~~~l~~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~yl~~~~~~~ 79 (226)
T TIGR03420 1 QLPLDVGLPDDPTFDNFYAGG-NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQ 79 (226)
T ss_pred CCCCCCCCCCCCCHHCCCCCC-HHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECHHHHHH
T ss_conf 988899999987631236586-7999999998764668886999899999889999999999862699579952999877
Q ss_pred H----HHHHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCC
Q ss_conf 4----546666665334332100376---103354555431123421564035432002234566788521222450788
Q gi|254780567|r 101 D----SILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 (246)
Q Consensus 101 ~----~~~~~~~~~i~iddi~~~~~~---ee~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~p 173 (246)
. .......+.+++||++.+.+. |++|||+||.+.++++++++||+.+|.++++.++||+|||+||++++|++|
T Consensus 80 ~~~~~l~~l~~~d~l~iDDi~~i~~~~~~e~~lF~l~N~~~~~~~~ilits~~~p~~l~~~l~dL~SRl~~~~~~~I~~p 159 (226)
T TIGR03420 80 ADPEVLEGLEQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPL 159 (226)
T ss_pred HHHHHHHHCCCCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHCCCCHHHHHHHHHCCCEEECCCC
T ss_conf 53999972744899999663334378378999999999998652828986788823203201779999968856852799
Q ss_pred CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 9789999999986662897988999999940667989999999999999998477878899999998
Q gi|254780567|r 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 (246)
Q Consensus 174 dde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~ITi~lvk~vL~ 240 (246)
||+++.++|++++.+||+.++++|++||++|++||++.+++++++||++|+..||+||+|+||++|.
T Consensus 160 dd~~~~~iL~k~~~~r~i~i~~~vi~yl~~r~~R~~~~l~~~l~~Ld~~sl~~kr~ITi~l~kevLa 226 (226)
T TIGR03420 160 SDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDALDRASLAAKRKITIPFVKEVLA 226 (226)
T ss_pred CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHC
T ss_conf 9999999999999985998899999999986379899999999999999998089999999999849
No 5
>PRK08903 hypothetical protein; Validated
Probab=100.00 E-value=0 Score=369.97 Aligned_cols=217 Identities=19% Similarity=0.256 Sum_probs=188.0
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHCCC--CCEEEEECCCCCCHHHHHHHHHHHH-----CCCCHHHH
Q ss_conf 1034155888776688454165361899999998510167--8849998787778688999999862-----76201356
Q gi|254780567|r 24 KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP--SRVVILVGPSGSGKSCLANIWSDKS-----RSTRFSNI 96 (246)
Q Consensus 24 ~~~Ql~l~~~~~~~~~~dnFiv~~~N~~A~~~i~~~~~~~--~~~l~i~G~~GsGKTHLl~a~~~~~-----~~~~~~~~ 96 (246)
+|+||+|++++++.++|||||+|+ |..|+.++.+|+.|+ .+++|||||+|+|||||+++||++. ++.|+...
T Consensus 1 m~~QL~l~~~l~~~~tfdnFv~g~-n~~~~~~l~~~~~~~~~~~~l~i~G~~G~GKTHLl~a~~~~~~~~~~~~~yl~~~ 79 (227)
T PRK08903 1 MMRQLTLDLGPPPPPTFDNFIAGE-NAELVTRLRELAAGPVADRFFYLWGEAGSGRSHLLQALVAAASEGGKNARYLDPA 79 (227)
T ss_pred CCCCCCCCCCCCCCCCHHCCCCCC-HHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 985778899999987643155777-5999999998874388786699989999988899999999998069974996511
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHCCCCC-EEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCC
Q ss_conf 76444546666665334332100376-10335455543112342-15640354320022345667885212224507889
Q gi|254780567|r 97 AKSLDSILIDTRKPVLLEDIDLLDFN-DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 (246)
Q Consensus 97 ~~~~~~~~~~~~~~i~iddi~~~~~~-ee~lf~l~n~~~~~~~~-iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pd 174 (246)
............+.+++||++.+.++ |+++||+||++.+++++ ++++++.+|..+.+ .+||+|||+||++++|++||
T Consensus 80 ~~~~~~~~~~~~d~l~iDDi~~i~~~~q~~lF~l~N~~~~~~~~~ll~s~~~~p~~l~~-~~DL~SRl~~gl~~~i~~pd 158 (227)
T PRK08903 80 SPLLAFDFDPRAELYAVDDVERLDDAQQIALFNLFNRVRAHGKTALLVAGPAAPLALDV-REDLRTRLGWGLVYEVKPLS 158 (227)
T ss_pred CCHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHCCC-CHHHHHHHHCCCEEEEECCC
T ss_conf 04577742001898999641148956999999999999972994899718997120120-08999999389738997979
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 78999999998666289798899999994066798999999999999999847787889999999867
Q gi|254780567|r 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 (246)
Q Consensus 175 de~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~ITi~lvk~vL~~~ 242 (246)
|+++.+||++++.+||+.++++|++||++|++||++++.+++++||++|+..||+||+|+||++|...
T Consensus 159 de~~~~iL~~~a~~rgl~l~~~v~~yl~~r~~R~~~~L~~~l~~Ld~~sl~~kr~iTi~lvkevLa~~ 226 (227)
T PRK08903 159 DEDKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDALDRYSLEQKRAVTLPLLREMLAAP 226 (227)
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCC
T ss_conf 99999999999996299998899999999834789999999999999999829999999999985599
No 6
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=100.00 E-value=0 Score=365.02 Aligned_cols=224 Identities=21% Similarity=0.279 Sum_probs=202.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHCCC---CCEEEEECCCCCCHHHHHHHHHHHHC-----CCCH
Q ss_conf 481034155888776688454165361899999998510167---88499987877786889999998627-----6201
Q gi|254780567|r 22 KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP---SRVVILVGPSGSGKSCLANIWSDKSR-----STRF 93 (246)
Q Consensus 22 ~~~~~Ql~l~~~~~~~~~~dnFiv~~~N~~A~~~i~~~~~~~---~~~l~i~G~~GsGKTHLl~a~~~~~~-----~~~~ 93 (246)
...+.|+++++.+++.|+||||++|++|+.|++++..|+++| +||+|||||+|+|||||+|||+++.. +.+.
T Consensus 68 ~~~~~q~~~~~~l~~~ytFdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~ 147 (408)
T COG0593 68 ASAPAQLPLPSGLNPKYTFDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVV 147 (408)
T ss_pred CCCCCCCCCCCCCCCCCCHHHEEECCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 55531356655689888554220477449999999998756688689579987999978999999999998629986488
Q ss_pred HHHHHHHHHHHHH--------------HHHHHHHHHHHCCCCC---CHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 3567644454666--------------6665334332100376---1033545554311234215640354320022345
Q gi|254780567|r 94 SNIAKSLDSILID--------------TRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156 (246)
Q Consensus 94 ~~~~~~~~~~~~~--------------~~~~i~iddi~~~~~~---ee~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~ 156 (246)
+.....+...+.. +.+.+++||++.+.++ |+++||+||.+...++++++||+.+|.++....+
T Consensus 148 y~~se~f~~~~v~a~~~~~~~~Fk~~y~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~ 227 (408)
T COG0593 148 YLTSEDFTNDFVKALRDNEMEKFKEKYSLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLED 227 (408)
T ss_pred ECCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHCCCCH
T ss_conf 50489989999999885048888876426735551386756771579999999998885088799970788322110358
Q ss_pred HHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 66788521222450788978999999998666289798899999994066798999999999999999847787889999
Q gi|254780567|r 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236 (246)
Q Consensus 157 DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~ITi~lvk 236 (246)
||+|||.||++++|++||++++.++|++++.++|+.+|++|++|+++|++|+++++++++++|+.+|...+++||+++|+
T Consensus 228 rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~ 307 (408)
T COG0593 228 RLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVK 307 (408)
T ss_pred HHHHHHHCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 89989863057752798889999999999986588888799999999700309999999999999998538757699999
Q ss_pred HHHHHHHCC
Q ss_conf 999867418
Q gi|254780567|r 237 EVLKETQQC 245 (246)
Q Consensus 237 ~vL~~~~~~ 245 (246)
++|++..++
T Consensus 308 e~L~~~~~~ 316 (408)
T COG0593 308 EILKDLLRA 316 (408)
T ss_pred HHHHHHHHC
T ss_conf 999986401
No 7
>PRK05642 DNA replication initiation factor; Validated
Probab=100.00 E-value=0 Score=367.58 Aligned_cols=216 Identities=20% Similarity=0.256 Sum_probs=189.8
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHH----HCCCCCEEEEECCCCCCHHHHHHHHHHHHCC-----CCHH
Q ss_conf 103415588877668845416536189999999851----0167884999878777868899999986276-----2013
Q gi|254780567|r 24 KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW----PSWPSRVVILVGPSGSGKSCLANIWSDKSRS-----TRFS 94 (246)
Q Consensus 24 ~~~Ql~l~~~~~~~~~~dnFiv~~~N~~A~~~i~~~----~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~-----~~~~ 94 (246)
++.||+|++++++.++|||||+|+ |..|+.++..| +.|+.+++||||++|+|||||++|+|++... .|+.
T Consensus 2 ~p~QL~L~~~l~~~~tfdnFi~g~-N~~a~~~~~~l~~~~~~~~~~~l~i~G~~G~GKTHLL~A~~~~~~~~~~~~~yl~ 80 (234)
T PRK05642 2 KPIQLPLGVRLRDDATFANYYPGA-NAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP 80 (234)
T ss_pred CCCCCCCCCCCCCCCCHHCCCCCC-CHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 951226799999977730357187-5999999999876067877883899889999889999999999980799679978
Q ss_pred HHHH-HH---HHHHHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCE
Q ss_conf 5676-44---4546666665334332100376---103354555431123421564035432002234566788521222
Q gi|254780567|r 95 NIAK-SL---DSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 (246)
Q Consensus 95 ~~~~-~~---~~~~~~~~~~i~iddi~~~~~~---ee~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~~g~~ 167 (246)
.... .. ........+.+|+||++.+.++ |++|||+||.+.++++++++||+.+|.++++.++||+|||+||++
T Consensus 81 ~~~~~~~~~~~~~~l~~~d~l~IDDi~~i~g~~~~e~~lF~l~N~~~~~~~~llits~~~P~~l~~~l~DL~SRl~~~~~ 160 (234)
T PRK05642 81 LAELLDRGPELLDNLEQYELVCIDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPVKLPDLKSRLTLALV 160 (234)
T ss_pred HHHHHHHHHHHHHHHHHCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCHHHHHHHHHCCCE
T ss_conf 99987544999862422798989364554688599999999999999839959995787955523001679999957812
Q ss_pred EEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 4507889789999999986662897988999999940667989999999999999998477878899999998
Q gi|254780567|r 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 (246)
Q Consensus 168 ~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~ITi~lvk~vL~ 240 (246)
++|++|||+.+.++|++++.+||+.++++|++||++|++||++++.+++++||++|+..||+||+|+||++|.
T Consensus 161 ~~i~~l~d~~~~~iL~~~a~~rgi~l~~~v~~yl~~r~~R~~~~L~~~l~~Ld~~sl~~kr~iTiplvk~vLg 233 (234)
T PRK05642 161 FQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTRSMSALFDLLERLDQASLQAQRKLTIPFLKETLG 233 (234)
T ss_pred EEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHC
T ss_conf 7514899899999999997754689998999999997358899999999999999998389999999999838
No 8
>PRK08727 hypothetical protein; Validated
Probab=100.00 E-value=0 Score=366.84 Aligned_cols=219 Identities=24% Similarity=0.252 Sum_probs=191.2
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC-----CHHHHHH
Q ss_conf 10341558887766884541653618999999985101678849998787778688999999862762-----0135676
Q gi|254780567|r 24 KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST-----RFSNIAK 98 (246)
Q Consensus 24 ~~~Ql~l~~~~~~~~~~dnFiv~~~N~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~-----~~~~~~~ 98 (246)
.+.||+|++++++.++||||++|++|..|. +...+..++.+++|||||+|||||||+++||+..... |+.....
T Consensus 2 ~~~QLpL~l~~~~~~tfdnFi~~~n~~~a~-l~~~~~~~~~~~lyl~G~~GsGKTHLl~a~~~~~~~~~~~~~yl~l~~~ 80 (233)
T PRK08727 2 SVPQLPLALRAPSDQRFDSYIAAPDGLLAQ-LQALAAGQSSDWLYLSGPAGTGKTHLALSLCAAAEQAGRSSAYLPLQAA 80 (233)
T ss_pred CCCCCCCCCCCCCCCCHHHCCCCCHHHHHH-HHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHH
T ss_conf 801047889999722421206785599999-9987438888989998999998899999999999827997288447885
Q ss_pred -HHH---HHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEEC
Q ss_conf -444---54666666533433210037---61033545554311234215640354320022345667885212224507
Q gi|254780567|r 99 -SLD---SILIDTRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 (246)
Q Consensus 99 -~~~---~~~~~~~~~i~iddi~~~~~---~ee~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~ 171 (246)
... .......+.+|+||++.+.+ ||++|||+||.+.++++++++||+.+|..+++.+|||+|||+||++++|+
T Consensus 81 ~~~~~~~l~~le~~~ll~iDDid~i~g~~~~e~aLFhL~N~~~~~~~~ll~ts~~~P~~l~~~l~DL~SRL~~~~~~~l~ 160 (233)
T PRK08727 81 AGRLRDALEALEGRSLVALDGVDSIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLSQCIRIGLP 160 (233)
T ss_pred HHHHHHHHHHHCCCCEEEEECCHHCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCHHHHHHHHHCCCEEEEC
T ss_conf 32025677531038978985501126982799999999999986198389977989566231002199999669228857
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 889789999999986662897988999999940667989999999999999998477878899999998674
Q gi|254780567|r 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 (246)
Q Consensus 172 ~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~ITi~lvk~vL~~~~ 243 (246)
+|||+++.++|++++.+||+.++++|++||++|++||++++..++++||+.|++.||+||+||||+||++-.
T Consensus 161 ~~dD~~~~~iL~~~a~~rgl~l~~~V~~Yll~r~~R~~~~l~~~l~~LD~~SL~~kr~iTip~vk~vL~e~~ 232 (233)
T PRK08727 161 VLDDVARAAVLRDRAQRRGLALDEAAIDWLLTHGERELAGLVALLDRLDRESLAAKRRITVPFLRRVLEEGR 232 (233)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC
T ss_conf 889799999999999986999998999999985688999999999999999998089888999999997226
No 9
>PRK06893 DNA replication initiation factor; Validated
Probab=100.00 E-value=0 Score=363.73 Aligned_cols=214 Identities=20% Similarity=0.253 Sum_probs=191.6
Q ss_pred CCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHH-----CCCCHHHHHH-HH
Q ss_conf 41558887766884541653618999999985101678849998787778688999999862-----7620135676-44
Q gi|254780567|r 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS-----RSTRFSNIAK-SL 100 (246)
Q Consensus 27 Ql~l~~~~~~~~~~dnFiv~~~N~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~-----~~~~~~~~~~-~~ 100 (246)
||+||+++.+..+||||++|++|+.+..+.+.|++|+++.+|||||+|||||||++|+|++. .+.|+..... ..
T Consensus 2 QL~L~~~~~~~~tfdnF~~~~n~~~~~~l~~~~~~~~~~~l~i~G~~gsGKTHLLqa~~~~~~~~~~~~~yi~~~~~~~~ 81 (229)
T PRK06893 2 QLPLPIHQIDDETLDNFYSDNNLLLLDSLRKNFIDLKQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYF 81 (229)
T ss_pred CCCCCCCCCCCCCHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHC
T ss_conf 71567999986654315468749999999975502469879998999998899999999999971898599973775640
Q ss_pred H---HHHHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHCCCCCEEE-EECCCCCCHHHHHHHHHHHHHHCCEEEECCC
Q ss_conf 4---546666665334332100376---10335455543112342156-4035432002234566788521222450788
Q gi|254780567|r 101 D---SILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 (246)
Q Consensus 101 ~---~~~~~~~~~i~iddi~~~~~~---ee~lf~l~n~~~~~~~~iil-ts~~~p~~~~~~l~DL~SRl~~g~~~~I~~p 173 (246)
. ...+...+.+|+||++.+.++ |+++||+||++.++++++++ +|+.+|.++.+.++||+|||+||++++|++|
T Consensus 82 ~~~~l~~l~~~d~l~iDDi~~i~g~~~~e~~lF~l~N~l~~~~~~~ll~ss~~~p~~l~~~l~DL~SRl~~~~~~~i~~~ 161 (229)
T PRK06893 82 SPAVLENLEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKESGKTLLLISANQSPHALQIKLPDLASRLTWGEIYQLNDL 161 (229)
T ss_pred CHHHHHHHHHCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHCCHHHHHHHHHHCCEEEEECCC
T ss_conf 69999876547979996723424883899999999999997599179985798833221002679999968836996677
Q ss_pred CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 9789999999986662897988999999940667989999999999999998477878899999998
Q gi|254780567|r 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 (246)
Q Consensus 174 dde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~ITi~lvk~vL~ 240 (246)
||++++.+|++++.+||+.++++|++||++|++||++++.+++++||++|++.||+||+|+||+||.
T Consensus 162 dd~~~~~iL~~~a~~rgl~l~~~v~~yl~~r~~R~~~~l~~~l~~Ld~~sl~~kr~iTiplvkevL~ 228 (229)
T PRK06893 162 TDEQKIEVLQRNAYQRGIELSDETANFLLKRLDRDMHTLFDALDLLDKASLQAQRKLTIPFVKEILG 228 (229)
T ss_pred CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHC
T ss_conf 7579999999999964999998999999998347899999999999999998089999999999868
No 10
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=100.00 E-value=0 Score=332.49 Aligned_cols=216 Identities=19% Similarity=0.220 Sum_probs=188.7
Q ss_pred CCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHCCC---CCEEEEECCCCCCHHHHHHHHHHHH-----CCCCHHHHHHHH
Q ss_conf 55888776688454165361899999998510167---8849998787778688999999862-----762013567644
Q gi|254780567|r 29 FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP---SRVVILVGPSGSGKSCLANIWSDKS-----RSTRFSNIAKSL 100 (246)
Q Consensus 29 ~l~~~~~~~~~~dnFiv~~~N~~A~~~i~~~~~~~---~~~l~i~G~~GsGKTHLl~a~~~~~-----~~~~~~~~~~~~ 100 (246)
...-+++++||||||+||+||++|++++.+..+.| +|||||||++|+|||||++|++++. .+...|..+..+
T Consensus 107 ~~~~~Ln~~yTFdnFVvG~sN~lA~aAA~~Va~~pg~~yNPLfIyG~~GlGKTHLl~AIgn~~~~~~p~~~v~Y~tae~F 186 (447)
T PRK00149 107 NFRSNLNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVSSEKF 186 (447)
T ss_pred CCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHH
T ss_conf 45678885560326222698599999999998376767785589779988788999999999998589972899549999
Q ss_pred HHH---------------HHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 454---------------6666665334332100376---1033545554311234215640354320022345667885
Q gi|254780567|r 101 DSI---------------LIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 (246)
Q Consensus 101 ~~~---------------~~~~~~~i~iddi~~~~~~---ee~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl 162 (246)
... .....+.+++||++.+.+. +|+|||+||.+.++||++|+||+.+|.++....++|+|||
T Consensus 187 ~~~~v~al~~~~~~~Fr~~yr~~DvLliDDiqfl~gk~~tqeeff~~fn~l~~~~kqiv~tsd~~P~~l~~l~~rL~SRf 266 (447)
T PRK00149 187 TNDFVKALRNNAMEEFKEKYRSVDVLLIDDIQFLAGKEKTQEEFFHTFNALHENNKQIVITSDRPPKELEGLEDRLRSRF 266 (447)
T ss_pred HHHHHHHHHCCCHHHHHHHHHCCCEEEECHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHCCCCCHHHHHHH
T ss_conf 99999998518699999999728854321488860557799999999999998499689957889676565117788676
Q ss_pred HHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 21222450788978999999998666289798899999994066798999999999999999847787889999999867
Q gi|254780567|r 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 (246)
Q Consensus 163 ~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~ITi~lvk~vL~~~ 242 (246)
.||++++|++||.|+|.+||++++...++.+|++|++||++++..++|.+++++++|-.++-..+++||+.+++++|++.
T Consensus 267 ~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~l~~~v~~~iA~~~~~nvR~LeGal~~l~a~~~~~~~~i~~~~~~~~l~~~ 346 (447)
T PRK00149 267 EWGLTVDIEPPDLETRVAILQKKAEEEGINLPNEVLEFIAKRIRSNIRELEGALNRLVAYASLTGRPITLELAKEALKDL 346 (447)
T ss_pred HCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 37626510599999999999999997289999899999997126889999999999999999868999999999999987
Q ss_pred HC
Q ss_conf 41
Q gi|254780567|r 243 QQ 244 (246)
Q Consensus 243 ~~ 244 (246)
.+
T Consensus 347 ~~ 348 (447)
T PRK00149 347 LR 348 (447)
T ss_pred HH
T ss_conf 40
No 11
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=100.00 E-value=0 Score=318.13 Aligned_cols=212 Identities=15% Similarity=0.216 Sum_probs=179.8
Q ss_pred CCCCCCCCCCEEECCCHHHHHHHHHHHHCC-------CCCEEEEECCCCCCHHHHHHHHHHHHCC---CCHHHHHHHHHH
Q ss_conf 877668845416536189999999851016-------7884999878777868899999986276---201356764445
Q gi|254780567|r 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSW-------PSRVVILVGPSGSGKSCLANIWSDKSRS---TRFSNIAKSLDS 102 (246)
Q Consensus 33 ~~~~~~~~dnFiv~~~N~~A~~~i~~~~~~-------~~~~l~i~G~~GsGKTHLl~a~~~~~~~---~~~~~~~~~~~~ 102 (246)
+++|.|+|||||||+||++|++++.+.... ++|||||||++|+|||||+||++++... ..+|.....+..
T Consensus 103 ~lNp~ytFd~FVvG~~N~lA~~aa~~va~~~~~~~g~~yNPLfIyG~~GlGKTHLL~AIgn~i~~~~~kV~Yvtae~F~~ 182 (455)
T PRK12422 103 DVDPEMTFANFLVTPENDLPFRILQEFAKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVSALRESGGKILYVSSELFTE 182 (455)
T ss_pred CCCCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECHHHHHH
T ss_conf 68977835583315860999999999983755358876787588789999789999999998537998699974999999
Q ss_pred H---------------HHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 4---------------6666665334332100376---103354555431123421564035432002234566788521
Q gi|254780567|r 103 I---------------LIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164 (246)
Q Consensus 103 ~---------------~~~~~~~i~iddi~~~~~~---ee~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~~ 164 (246)
. .....+.+++||++++.+. +++|||+||.+.++||++|+|||.+|.++....++|+|||.|
T Consensus 183 ~~v~ai~~~~~~~Fr~~yr~~DvLLIDDIQfl~gK~~tqeEff~tfN~L~~~~KQIVitsDr~P~el~~l~~RL~SRf~~ 262 (455)
T PRK12422 183 HLVSAIRSGEMQRFRSFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSSYAPGDLKAMEERLISRFEW 262 (455)
T ss_pred HHHHHHHCCCHHHHHHHHHCCCEEEEEHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHC
T ss_conf 99999975889999999963887763147887284889999999999999859969996898957651268999988637
Q ss_pred CCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHH---HHHHHCCCCCHHHHHHHHHH
Q ss_conf 222450788978999999998666289798899999994066798999999999999---99984778788999999986
Q gi|254780567|r 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN---LALSRGMGITRSLAAEVLKE 241 (246)
Q Consensus 165 g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~---~sl~~kr~ITi~lvk~vL~~ 241 (246)
|++++|++||.|++.+||++++...++.+|++|++||+.++..+.+.+++++++|-. ++-..++.+|...++++|++
T Consensus 263 GL~v~I~~Pd~etr~~Il~~k~~~~~~~l~~ev~~~iA~~i~~niReLeGal~~l~~~~~~~~~~~~~i~~~~~~~~l~d 342 (455)
T PRK12422 263 GIAIPIHPLTREGLRSFLMRQAEQLSIRIEETALDFLIQALSSNVKTLLHALTLLAKRVAYKKLSHQLLYEDDIKALLHD 342 (455)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 61321689998999999999998718888446899999997551799999999999999987156883649999999998
Q ss_pred HHC
Q ss_conf 741
Q gi|254780567|r 242 TQQ 244 (246)
Q Consensus 242 ~~~ 244 (246)
..+
T Consensus 343 ~~~ 345 (455)
T PRK12422 343 VLE 345 (455)
T ss_pred HHC
T ss_conf 742
No 12
>pfam00308 Bac_DnaA Bacterial dnaA protein.
Probab=100.00 E-value=0 Score=317.15 Aligned_cols=191 Identities=17% Similarity=0.194 Sum_probs=165.8
Q ss_pred CCCCCCCCCEEECCCHHHHHHHHHHHHCCC---CCEEEEECCCCCCHHHHHHHHHHHHCC-------CCHHHHHHHH---
Q ss_conf 776688454165361899999998510167---884999878777868899999986276-------2013567644---
Q gi|254780567|r 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWP---SRVVILVGPSGSGKSCLANIWSDKSRS-------TRFSNIAKSL--- 100 (246)
Q Consensus 34 ~~~~~~~dnFiv~~~N~~A~~~i~~~~~~~---~~~l~i~G~~GsGKTHLl~a~~~~~~~-------~~~~~~~~~~--- 100 (246)
++|+||||||+||++|++|+.+++.+.+|| .||+|||||+|+|||||+||++++... .|+.+.....
T Consensus 1 l~~~~TFdnF~vg~~N~~a~~~~~~i~~~~~~~~npl~i~G~~G~GKTHLLqA~~~~~~~~~~~~~v~yl~~~~~~~~~~ 80 (219)
T pfam00308 1 LNKRYTFENFVIGSSNRFAHAAALAVAEAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALRNFPNLRVVYLTSEEFLNDFV 80 (219)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHH
T ss_conf 99998710202368389999999999967587678269988999988899999999999849998288843999999889
Q ss_pred ----------HHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCE
Q ss_conf ----------454666666533433210037---6103354555431123421564035432002234566788521222
Q gi|254780567|r 101 ----------DSILIDTRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 (246)
Q Consensus 101 ----------~~~~~~~~~~i~iddi~~~~~---~ee~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~~g~~ 167 (246)
........+.+++||++.+.+ +|+++||++|.+.++++++|+||+.+|.++.+.++||+|||+||++
T Consensus 81 ~~l~~~~~~~f~~~l~~~d~l~iDDi~~l~~~~~~ee~lf~l~N~~~~~~~~lllts~~~p~~l~~~~~dL~SRL~~g~~ 160 (219)
T pfam00308 81 DALRDNKIEAFKKSYRNVDLLLIDDIQFLAGKEKTQEEFFHTFNALHENNKQIVLTSDRPPKELEGFEDRLRSRFEWGLI 160 (219)
T ss_pred HHHHCCCHHHHHHHHHHCCHHHHCCHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHCCEE
T ss_conf 99981888899999763233652236765686478999999999999729869997799810024532779999868756
Q ss_pred EEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 450788978999999998666289798899999994066798999999999999999
Q gi|254780567|r 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 (246)
Q Consensus 168 ~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl 224 (246)
++|++|||+++.++|++++.+||+.++++|++||++|++||++++++++++|+.+|.
T Consensus 161 ~~i~~pdd~~~~~iL~~~a~~r~l~l~~~v~~yl~~r~~R~~r~L~~~L~~L~~~~~ 217 (219)
T pfam00308 161 IAIEPPDLETRLAILRKKAEEENINIPNEVLNFIAQRITDNVRELEGALNRLLAFAS 217 (219)
T ss_pred EECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
T ss_conf 611699999999999999998499999999999998427989999999999998550
No 13
>TIGR00362 DnaA chromosomal replication initiator protein DnaA; InterPro: IPR001957 The bacterial dnaA protein , , plays an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) .; GO: 0003677 DNA binding, 0003688 DNA replication origin binding, 0005524 ATP binding, 0006270 DNA replication initiation, 0006275 regulation of DNA replication.
Probab=99.96 E-value=1.5e-27 Score=189.50 Aligned_cols=214 Identities=19% Similarity=0.175 Sum_probs=182.1
Q ss_pred CCCCCCCCCCCCCEEECCCHHHHHHHHHHH---HCC-CCCEEEEECCCCCCHHHHHHHHHHHHCC-----CCHHHHHHHH
Q ss_conf 588877668845416536189999999851---016-7884999878777868899999986276-----2013567644
Q gi|254780567|r 30 FSFPRCLGISRDDLLVHSAIEQAVRLIDSW---PSW-PSRVVILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSL 100 (246)
Q Consensus 30 l~~~~~~~~~~dnFiv~~~N~~A~~~i~~~---~~~-~~~~l~i~G~~GsGKTHLl~a~~~~~~~-----~~~~~~~~~~ 100 (246)
..-..+..|+|++|++|++|+.++.+.... +.. +++|+++||+.|.|||||++++.+..-. ...+.....+
T Consensus 143 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~p~~~p~~~~gg~glg~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 222 (493)
T TIGR00362 143 PKTSLNGKYTFDNFVVGPSNRLAYAASLKVAESPGKPAYNPLFLYGGTGLGKTHLLHAIGNGVLELHPNAKVLYVTSENF 222 (493)
T ss_pred HHHHCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEHHHH
T ss_conf 11111321000000114652156777777640578766562477447542156787776434443067732788501467
Q ss_pred HHH---------------HHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 454---------------6666665334332100376---1033545554311234215640354320022345667885
Q gi|254780567|r 101 DSI---------------LIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 (246)
Q Consensus 101 ~~~---------------~~~~~~~i~iddi~~~~~~---ee~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl 162 (246)
... .....+.+.+||++.+.+. ++++||.+|.+.+.+++++++++..|.++......|.||+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~d~~l~dd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~p~~~~~~~~~l~~~~ 302 (493)
T TIGR00362 223 LNDFVKALRDNKLDDFKKKYRSLDFLLIDDIQFLAGKEKTQEEFFHTFNALHEDGKQIVLTSDRSPKEIPGLEDRLKSRF 302 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHCHHHHHHHHHH
T ss_conf 89999875200168888876311123111047641352036888888887740685278851666201000467776543
Q ss_pred HHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 21222450788978999999998666289798899999994066798999999999999999847787889999999867
Q gi|254780567|r 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 (246)
Q Consensus 163 ~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~ITi~lvk~vL~~~ 242 (246)
.||+...+.+|+-+.+.+++.+.+...++.+|.+++.|++.++..+.+.+.+++.++..++-..+..+++.++++++++.
T Consensus 303 ~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (493)
T TIGR00362 303 GWGLTADIEPPDLETRLAILKKKAEEDGINLPEEVLEYIAQHLTSNVRELEGALIRVKAYADLDNADIDLDLVAEVLKDL 382 (493)
T ss_pred HCCCEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 01410002465235789998865443035652789999988642246777677887765420012100177789999876
Q ss_pred H
Q ss_conf 4
Q gi|254780567|r 243 Q 243 (246)
Q Consensus 243 ~ 243 (246)
.
T Consensus 383 ~ 383 (493)
T TIGR00362 383 L 383 (493)
T ss_pred H
T ss_conf 5
No 14
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.78 E-value=6.8e-18 Score=130.02 Aligned_cols=199 Identities=19% Similarity=0.194 Sum_probs=136.2
Q ss_pred CCCCCCCCCEEECCCHHHH-HHHHHHHHC-CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH----HH--
Q ss_conf 7766884541653618999-999985101-678849998787778688999999862762013567644454----66--
Q gi|254780567|r 34 RCLGISRDDLLVHSAIEQA-VRLIDSWPS-WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI----LI-- 105 (246)
Q Consensus 34 ~~~~~~~dnFiv~~~N~~A-~~~i~~~~~-~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~~----~~-- 105 (246)
..|. ++|+|+ |...-.. -.++.++.+ .....+++|||||+|||.|++++++..+..+....+...... .+
T Consensus 7 ~RP~-~lde~v-GQ~hllg~~~~L~~~i~~~~~~s~Il~GPPG~GKTTlA~iiA~~~~~~f~~lnA~~~gv~dir~ii~~ 84 (417)
T PRK13342 7 MRPK-TLDEVV-GQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAEFEALSAVTSGVKDLREVIEE 84 (417)
T ss_pred HCCC-CHHHHC-CCHHHHCCCHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 4999-888857-98776089719999997699975998896999899999999998689889961410388999999999
Q ss_pred ------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHH
Q ss_conf ------66665334332100376103354555431123421564035432002234566788521222450788978999
Q gi|254780567|r 106 ------DTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179 (246)
Q Consensus 106 ------~~~~~i~iddi~~~~~~ee~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~ 179 (246)
....++++|.+|.++..++..|--+ .++|.-+++.++...+... ..+-|.||+. ++++++++.+.+.
T Consensus 85 a~~~~~~~~tilfiDEIHRfnK~QQD~LLp~---vE~g~iiLIgATTENP~f~-in~aLlSRc~---vf~l~~L~~~di~ 157 (417)
T PRK13342 85 AKQSRLGRRTILFIDEIHRFNKAQQDALLPH---VEDGTITLIGATTENPSFE-VNPALLSRAQ---VFELKPLSEEDLE 157 (417)
T ss_pred HHHHHCCCCEEEEEECHHHCCHHHHHHHHHH---HHCCCEEEEEECCCCCHHH-CCHHHHHHHH---HEECCCCCHHHHH
T ss_conf 8863148965999978200588999999875---1126569997415792253-4898985657---0020589999999
Q ss_pred HHHHHHHHH-----CCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 999998666-----289798899999994066798999999999999999847787889999999867
Q gi|254780567|r 180 KVIVKMFAD-----RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 (246)
Q Consensus 180 ~il~k~~~~-----r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~ITi~lvk~vL~~~ 242 (246)
.++++.+.. .++.++++++++|+.....|.|.+.++++.+. .....+..||...+++++...
T Consensus 158 ~iL~ral~~e~~~~~~i~i~~~al~~i~~~s~GDaR~aLN~LE~a~-~~~~~~~~i~~~~~~~~~~~~ 224 (417)
T PRK13342 158 QLLKRALEDERGLGRKLELDDEALDALARLADGDARRALNLLELAA-AAAAGGEVITLELLEEALQRR 224 (417)
T ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH-HCCCCCCCCCHHHHHHHHHHC
T ss_conf 9999999877433788776999999999814985999999999998-525899734899999998441
No 15
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.75 E-value=3e-17 Score=126.01 Aligned_cols=205 Identities=16% Similarity=0.153 Sum_probs=142.6
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCH-----HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 341558887766884541653618-----999999985101678849998787778688999999862762013567644
Q gi|254780567|r 26 EQLFFSFPRCLGISRDDLLVHSAI-----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 (246)
Q Consensus 26 ~Ql~l~~~~~~~~~~dnFiv~~~N-----~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~ 100 (246)
.|-+|.-...|. ++|+|| |... .....+|++ .....+++|||||||||.|++++++..+..+....+...
T Consensus 14 ~~aPLA~rmRP~-~Lde~v-GQ~hllg~g~~Lrr~i~~---~~~~S~Il~GPPGtGKTTLA~iIA~~t~~~F~~lsAv~s 88 (726)
T PRK13341 14 SEAPLADRLRPR-TLEEFV-GQDHILGEGRLLRRAIKA---DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA 88 (726)
T ss_pred CCCCCHHHHCCC-CHHHHC-CCHHHCCCCCHHHHHHHC---CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 269856862999-877735-957542898289999976---999827888979999999999998874886799856203
Q ss_pred HH-----HHHH---------HHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 45-----4666---------666533433210037610335455543112342156403543200223456678852122
Q gi|254780567|r 101 DS-----ILID---------TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 (246)
Q Consensus 101 ~~-----~~~~---------~~~~i~iddi~~~~~~ee~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~~g~ 166 (246)
.. .... ...++++|.||.++..++..|--+ .++|.-+++.++...+.... -+-|.||+.
T Consensus 89 gvkdlr~ii~~A~~~~~~~g~~tILFIDEIHRfNK~QQD~LLp~---vE~G~i~LIGATTENP~F~v-n~ALlSR~~--- 161 (726)
T PRK13341 89 GVKDLRAEVDAAKERLERHGKRTILFIDEVHRFNKAQQDALLPW---VENGTVTLIGATTENPYFEV-NKALVSRSR--- 161 (726)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHCCHHHHHHHHHH---HCCCEEEEEEECCCCCCEEE-CHHHHHHCE---
T ss_conf 77999999999999987459965999862542588789987888---60683899970478974364-298883234---
Q ss_pred EEEECCCCHHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH---CCCCCHHHHH
Q ss_conf 2450788978999999998666-------28979889999999406679899999999999999984---7787889999
Q gi|254780567|r 167 VVKISLPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR---GMGITRSLAA 236 (246)
Q Consensus 167 ~~~I~~pdde~~~~il~k~~~~-------r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~---kr~ITi~lvk 236 (246)
++++++++++.+..++++...+ ..+.+++++++||+.....|.+.+.++++..-..+-.. ...||...++
T Consensus 162 vf~L~~L~~~dl~~il~rAl~d~~~g~~~~~i~i~~~al~~l~~~s~GDaR~aLN~LElav~~~~~~~~~~~~i~~~~~~ 241 (726)
T PRK13341 162 LFRLKSLEDEDLHQLLKRALQDKERGYGDRNIDLEPEAEKHLVDVANGDARSLLNALELAVESTPPDEDGVIHINLAIAE 241 (726)
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEECHHHHH
T ss_conf 66743899999999999998767432566787759899999999759739999999999997074576883443599999
Q ss_pred HHHHHH
Q ss_conf 999867
Q gi|254780567|r 237 EVLKET 242 (246)
Q Consensus 237 ~vL~~~ 242 (246)
+.+...
T Consensus 242 ~~~~~~ 247 (726)
T PRK13341 242 ESIQQR 247 (726)
T ss_pred HHHHHH
T ss_conf 998566
No 16
>PRK04195 replication factor C large subunit; Provisional
Probab=99.70 E-value=1.3e-15 Score=116.04 Aligned_cols=188 Identities=21% Similarity=0.278 Sum_probs=124.2
Q ss_pred CCCCEEECCCH--HHHHHHHHHHHCC--CCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHH------H-------
Q ss_conf 84541653618--9999999851016--78849998787778688999999862762013567644------4-------
Q gi|254780567|r 39 SRDDLLVHSAI--EQAVRLIDSWPSW--PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL------D------- 101 (246)
Q Consensus 39 ~~dnFiv~~~N--~~A~~~i~~~~~~--~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~------~------- 101 (246)
++++.+ |... +....|+++|.++ +.++++|+||||+|||.+++++|++.+...+...+... .
T Consensus 12 ~~~div-g~~~~v~~l~~Wl~~w~~g~~~~k~lLL~GPpGvGKTT~a~~lAk~~g~~viElNASD~R~~~~I~~~i~~~~ 90 (403)
T PRK04195 12 SLSDVV-GNEKAKKQLREWIESWLKGKPPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTKDVIERVAGEAS 90 (403)
T ss_pred CHHHHH-CCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 899985-8899999999999998739965746998893998799999999998499859977101147899999999876
Q ss_pred ---HHHHHHHHHHHHHHHHCCCCCCH-H-HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHH
Q ss_conf ---54666666533433210037610-3-354555431123421564035432002234566788521222450788978
Q gi|254780567|r 102 ---SILIDTRKPVLLEDIDLLDFNDT-Q-LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 (246)
Q Consensus 102 ---~~~~~~~~~i~iddi~~~~~~ee-~-lf~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde 176 (246)
.......+++++|+++++.+... . +-.+.+.+.....+++++++.+ +...++.|+||+ ..+.+.+|+.+
T Consensus 91 ~~~sl~~~~~KlIIlDEvD~l~~~~d~gg~~al~~~ik~s~~PiIli~Nd~---~~~~~~~lrs~c---~~i~F~~~~~~ 164 (403)
T PRK04195 91 TSGSLFGAKRKLILLDEVDGIHGNADRGGVRAILEIIKKAKNPIILTANDP---YDPSLRPLRNAC---LMIEFKRLSKR 164 (403)
T ss_pred HCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCC---CCCCHHHHHHHH---HHCCCCCCCHH
T ss_conf 068877887349996343445724447999999999854887089982684---556717799766---12217994999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 9999999986662897988999999940667989999999999999998477878899999
Q gi|254780567|r 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237 (246)
Q Consensus 177 ~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~ITi~lvk~ 237 (246)
.+...|.+.|...|+.+++++++.|+++...|+|++ ++.|...+. .++.+|...+..
T Consensus 165 ~I~~~L~~I~~~Egi~i~~~aL~~Ia~~s~GDlR~a---IN~LQ~~~~-~~~~~~~~~~~~ 221 (403)
T PRK04195 165 SIVPVLKRICRKEGIECEEEALREIAERSGGDLRSA---INDLQAIAE-GGGRITLDDVKT 221 (403)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHH---HHHHHHHHC-CCCCCCHHHHHH
T ss_conf 999999999997699999999999999879739999---999999974-899775666664
No 17
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=99.70 E-value=7.6e-16 Score=117.42 Aligned_cols=184 Identities=18% Similarity=0.183 Sum_probs=122.2
Q ss_pred CCCCCCCCCEEECCCHHHHH--HHHHHHH--CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHH--H------
Q ss_conf 77668845416536189999--9998510--1678849998787778688999999862762013567644--4------
Q gi|254780567|r 34 RCLGISRDDLLVHSAIEQAV--RLIDSWP--SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL--D------ 101 (246)
Q Consensus 34 ~~~~~~~dnFiv~~~N~~A~--~~i~~~~--~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~--~------ 101 (246)
..|. +|++|+ |...-..- .+++... ..+-..+++|||||+|||.|++++++..++.+........ .
T Consensus 18 lRP~-~l~e~v-GQehl~~~l~~~i~a~~~~~~~l~h~lf~GPPG~GKTTlAriiAk~~~~~~~~~s~~~i~~~~di~~~ 95 (234)
T pfam05496 18 LRPR-RLDEYI-GQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKPGDLAAI 95 (234)
T ss_pred CCCC-CHHHCC-CHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHH
T ss_conf 4989-766606-94999999999999887427776627887899998889999999840875376142666438999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCC--------------------EEEEECCCCCCHHHHHHHHHHH
Q ss_conf 54666666533433210037610335455543112342--------------------1564035432002234566788
Q gi|254780567|r 102 SILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSS--------------------LLMTARTFPVSWGVCLPDLCSR 161 (246)
Q Consensus 102 ~~~~~~~~~i~iddi~~~~~~ee~lf~l~n~~~~~~~~--------------------iilts~~~p~~~~~~l~DL~SR 161 (246)
.......+++.+|.+|.++..++..|.-. .+.+.- +++.++..+..+ .+-|+||
T Consensus 96 l~~~~~~~ILFIDEIHr~nK~qqd~Llp~---vE~g~i~i~ig~~~~A~~~~~e~P~FtLIgATTe~~~l---~~pl~sR 169 (234)
T pfam05496 96 LTNLEPGDVLFIDEIHRLNRAVEEILYPA---MEDFRLDIVIGKGPSARSIRLDLPPFTLVGATTRAGLL---TSPLRDR 169 (234)
T ss_pred HHHCCCCCEEEEECHHHCCHHHHHHCCCC---CCCCEEEEEECCCCCCEEEECCCCCEEEEEECCCCCCC---CHHHHHH
T ss_conf 98458998899966543587688744553---34616999963676632465268975998521566647---7779976
Q ss_pred HHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 521222450788978999999998666289798899999994066798999999999999999847
Q gi|254780567|r 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 (246)
Q Consensus 162 l~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~k 227 (246)
++ .++++++.+.+.+..|+.+.+...++.++++++++|++....+.|.+.+++++...+|-.++
T Consensus 170 ~~--i~~~l~~l~~edl~~il~r~~~~l~i~i~~eal~~IA~~s~Gd~R~ALnlLe~v~d~a~~~~ 233 (234)
T pfam05496 170 FG--IVLRLEFYSVEELEEIVKRSARILGVEIDEEGAAEIARRSRGTPRIANRLLRRVRDFAQVKG 233 (234)
T ss_pred HH--HEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 21--12442468999999999999998399959999999999779989999899999999998734
No 18
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.68 E-value=5.6e-15 Score=112.08 Aligned_cols=206 Identities=19% Similarity=0.177 Sum_probs=145.9
Q ss_pred CCCCCCCCCCCCCEEECCCHHH-----HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHH-----
Q ss_conf 5888776688454165361899-----999998510167884999878777868899999986276201356764-----
Q gi|254780567|r 30 FSFPRCLGISRDDLLVHSAIEQ-----AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS----- 99 (246)
Q Consensus 30 l~~~~~~~~~~dnFiv~~~N~~-----A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~----- 99 (246)
++..+.|. +|++|+ |..+-. ++++.+. -..+-..+.+|||||+|||.|+++++++.+..+.......
T Consensus 15 ~~~~lRP~-~l~efi-GQ~~i~~~L~v~i~Aak~-r~e~ldH~Ll~GPPGlGKTTLA~iiA~E~~~~~~~tsGP~lek~~ 91 (328)
T PRK00080 15 FERSLRPK-SLDEFI-GQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKAG 91 (328)
T ss_pred CCCCCCCC-CHHHCC-CHHHHHHHHHHHHHHHHH-CCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEECCCCCCCCHH
T ss_conf 00055988-576635-959999999999999996-499988057658899889999999999868881562450016747
Q ss_pred ---HHHHHHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHC----------------CCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf ---445466666653343321003761033-545554311----------------234215640354320022345667
Q gi|254780567|r 100 ---LDSILIDTRKPVLLEDIDLLDFNDTQL-FHIINSIHQ----------------YDSSLLMTARTFPVSWGVCLPDLC 159 (246)
Q Consensus 100 ---~~~~~~~~~~~i~iddi~~~~~~ee~l-f~l~n~~~~----------------~~~~iilts~~~p~~~~~~l~DL~ 159 (246)
.....+...+++.||.+|.++..-|++ +.......- -....++.++.....+ ..=|+
T Consensus 92 DL~~iLt~l~~~dvLFIDEIHRl~~~vEE~LY~AMEDf~iDi~iG~g~~Ar~~~i~L~pFTLIGATTr~g~L---s~PLr 168 (328)
T PRK00080 92 DLAALLTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLL---TSPLR 168 (328)
T ss_pred HHHHHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHHCEEEEEECCCCCCEEEECCCCCEEEEECCCCCCCC---CHHHH
T ss_conf 899999608878767650653248889988579877523457864786532455589983474013676657---76789
Q ss_pred HHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH-HCCCCCHHHHHHH
Q ss_conf 885212224507889789999999986662897988999999940667989999999999999998-4778788999999
Q gi|254780567|r 160 SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS-RGMGITRSLAAEV 238 (246)
Q Consensus 160 SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~-~kr~ITi~lvk~v 238 (246)
+|| |.+..++.-+.+++..|+.+.+..-++.++++.+..|++|...+++-+..++.++--++.. ....||...++++
T Consensus 169 dRF--Gi~~~l~~Y~~eeL~~Ii~rsa~~l~i~i~~~~~~eIA~rSRGTPRiAnrLLrRvrDfa~v~~~~~I~~~~~~~a 246 (328)
T PRK00080 169 DRF--GIVQRLEFYTVEELEKIVKRSARILGIEIDEEGALEIARRSRGTPRIANRLLRRVRDFAQVKGDGIITREIADKA 246 (328)
T ss_pred HHC--CCEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 757--933663458999999999999998398878999999998638983999999999999999837996599999999
Q ss_pred HHHHH
Q ss_conf 98674
Q gi|254780567|r 239 LKETQ 243 (246)
Q Consensus 239 L~~~~ 243 (246)
|+.+.
T Consensus 247 L~~l~ 251 (328)
T PRK00080 247 LDMLG 251 (328)
T ss_pred HHHCC
T ss_conf 99569
No 19
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.66 E-value=3.2e-15 Score=113.53 Aligned_cols=205 Identities=18% Similarity=0.184 Sum_probs=137.7
Q ss_pred CCCCCCCCCCCCCCEEECCCHHHHH-HHHHHHH-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHH-----H
Q ss_conf 5588877668845416536189999-9998510-1678849998787778688999999862762013567644-----4
Q gi|254780567|r 29 FFSFPRCLGISRDDLLVHSAIEQAV-RLIDSWP-SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL-----D 101 (246)
Q Consensus 29 ~l~~~~~~~~~~dnFiv~~~N~~A~-~~i~~~~-~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~-----~ 101 (246)
+|.-...|. ++|+++ |..--..- ..+.+.. .+.-...++|||||+|||.|+++++...++.+....+... .
T Consensus 13 PLA~rmRP~-~lde~v-GQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr 90 (436)
T COG2256 13 PLAERLRPK-SLDEVV-GQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLR 90 (436)
T ss_pred CHHHHHCCC-CHHHHC-CHHHHHCCCCHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCCCHHHHH
T ss_conf 767770977-787855-718661899438999964998605777899988889999998761776699515234679999
Q ss_pred HHHHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCC
Q ss_conf 54666--------6665334332100376103354555431123421564035432002234566788521222450788
Q gi|254780567|r 102 SILID--------TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 (246)
Q Consensus 102 ~~~~~--------~~~~i~iddi~~~~~~ee~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~p 173 (246)
..... ...++.+|.+|.++..|+..|--. .++|.-+++.++...+.... -+-|+||.. +++++++
T Consensus 91 ~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~---vE~G~iilIGATTENPsF~l-n~ALlSR~~---vf~lk~L 163 (436)
T COG2256 91 EIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPH---VENGTIILIGATTENPSFEL-NPALLSRAR---VFELKPL 163 (436)
T ss_pred HHHHHHHHHHHCCCCEEEEEEHHHHCCHHHHHHHHHH---HCCCEEEEEECCCCCCCEEE-CHHHHHHHH---EEEEECC
T ss_conf 9999999987258834998722533374456551033---24886899962678987140-388861104---1565169
Q ss_pred CHHHHHHHHHHHH--HHCCCC-----CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 9789999999986--662897-----988999999940667989999999999999998477878899999998674
Q gi|254780567|r 174 DDDFLEKVIVKMF--ADRQIF-----IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 (246)
Q Consensus 174 dde~~~~il~k~~--~~r~i~-----l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~ITi~lvk~vL~~~~ 243 (246)
+.+.+..++++.+ ..|++. +++++.+|++.....|.+.+.+.++.....+- .++.+++..+++++.+..
T Consensus 164 ~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~-~~~~~~~~~l~~~l~~~~ 239 (436)
T COG2256 164 SSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAE-PDEVLILELLEEILQRRS 239 (436)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC-CCCCCCHHHHHHHHHHHH
T ss_conf 9899999999998654137776556688899999998628619999889999998627-775247999999986552
No 20
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.66 E-value=3.9e-15 Score=113.06 Aligned_cols=187 Identities=14% Similarity=0.136 Sum_probs=129.3
Q ss_pred CCCCEEECCCHHHHHHHHHHHHCC-CCCEEEEECCCCCCHHHHHHHHHHHHCCC-----C--HHHHHHH---H----HHH
Q ss_conf 845416536189999999851016-78849998787778688999999862762-----0--1356764---4----454
Q gi|254780567|r 39 SRDDLLVHSAIEQAVRLIDSWPSW-PSRVVILVGPSGSGKSCLANIWSDKSRST-----R--FSNIAKS---L----DSI 103 (246)
Q Consensus 39 ~~dnFiv~~~N~~A~~~i~~~~~~-~~~~l~i~G~~GsGKTHLl~a~~~~~~~~-----~--~~~~~~~---~----~~~ 103 (246)
+|++++ .|+.+.+.+++|.+. ....+.+|||+|+|||.++++++++.... . +.+.+.. . ...
T Consensus 14 ~l~di~---g~~~~~~~L~~~i~~~~~phlLf~GppG~GKTt~a~~la~~l~~~~~~~~~lelnasd~r~id~vr~~i~~ 90 (318)
T PRK00440 14 SLDEVV---GQEEIVERLKSFVKEKNMPHLLFAGPPGTGKTTAALALARELYGEYWRENFLELNASDERGIDVIRNKIKE 90 (318)
T ss_pred CHHHHC---CCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHH
T ss_conf 899941---96999999999998799866988895998899999999999769864347689516456671789999999
Q ss_pred -------HHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCH
Q ss_conf -------666666533433210037610-335455543112342156403543200223456678852122245078897
Q gi|254780567|r 104 -------LIDTRKPVLLEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 (246)
Q Consensus 104 -------~~~~~~~i~iddi~~~~~~ee-~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdd 175 (246)
....++.+++|++|.+..+.+ +|.-++. ....+.+.+++++.+ .. .++-++||+. .+++++|++
T Consensus 91 ~~~~~~~~~~~~kiiiiDE~d~l~~~aq~aL~~~mE-~~~~~~~fil~~n~~-~k---ii~~i~SRc~---~i~f~~~~~ 162 (318)
T PRK00440 91 FARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTME-MYSQTTRFILSCNYS-SK---IIDPIQSRCA---VFRFSPLPK 162 (318)
T ss_pred HHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHH-CCCCCCEEEEECCCC-CC---CCCCHHHHHE---EEECCCCCH
T ss_conf 997267789973899986855322556788876431-056662588634883-33---7615565510---111578999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 89999999986662897988999999940667989999999999999998477878899999998
Q gi|254780567|r 176 DFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 (246)
Q Consensus 176 e~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~ITi~lvk~vL~ 240 (246)
+.....|.+.+...++.+++++++.|+.....|+|.+.+.+.. .+. .+..||...+.+++.
T Consensus 163 ~~i~~~L~~I~~~E~i~~~~~~l~~i~~~s~gdlR~ain~Lq~---~~~-~~~~it~~~v~~~~~ 223 (318)
T PRK00440 163 EAVIERLRYIAKNEGLEITDDALEAIYYVSEGDMRKAINALQA---AAA-TGKEVTEEAVYKITG 223 (318)
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH---HHH-CCCCCCHHHHHHHHC
T ss_conf 9999999999998599989999999998649989999999999---997-489878999999976
No 21
>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=99.65 E-value=5.3e-15 Score=112.23 Aligned_cols=197 Identities=16% Similarity=0.170 Sum_probs=140.5
Q ss_pred CCCCEEECCCH-----HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHH--------HHHHHHHHH
Q ss_conf 84541653618-----99999998510167884999878777868899999986276201356--------764445466
Q gi|254780567|r 39 SRDDLLVHSAI-----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNI--------AKSLDSILI 105 (246)
Q Consensus 39 ~~dnFiv~~~N-----~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~--------~~~~~~~~~ 105 (246)
++++|+ |..+ +..+.+.+.-.+ .--.++||||||.|||.|++++|++.+....... +.......+
T Consensus 2 ~L~eFi-GQ~~vk~~L~l~I~AAk~R~e-~LDH~LL~GPPGLGKTTLA~IiA~Emg~~l~iTsGP~L~kPgDlaaiLt~L 79 (305)
T TIGR00635 2 LLAEFI-GQEKVKEQLQLFIEAAKMRQE-ALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLAAILTNL 79 (305)
T ss_pred CCHHCC-CCHHHHHHHHHHHHHHHHCCC-CCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHC
T ss_conf 801105-828899999999999982489-734166317568746789999999838932674067554757899999705
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHH-HHHHHHC----------------CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEE
Q ss_conf 66665334332100376103354-5554311----------------234215640354320022345667885212224
Q gi|254780567|r 106 DTRKPVLLEDIDLLDFNDTQLFH-IINSIHQ----------------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168 (246)
Q Consensus 106 ~~~~~i~iddi~~~~~~ee~lf~-l~n~~~~----------------~~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~ 168 (246)
..-+++.||.||.++-.-|++++ -..-..- -....++-++..+..+. -| |+|||. .+.
T Consensus 80 ~~gDVLFIDEIHRL~p~~EE~LYpAMEDF~lDi~IG~Gp~Ar~v~ldLpPFTLvGATTR~G~lt--~P-LrdRFG--~~~ 154 (305)
T TIGR00635 80 EEGDVLFIDEIHRLSPAIEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLT--SP-LRDRFG--IIL 154 (305)
T ss_pred CCCCEEECCHHHHCCHHHHHHCCCCCCCEEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCC--CC-HHHHHH--HHH
T ss_conf 6896310125650483345310530012178778712898525760686944200003477410--31-334544--745
Q ss_pred EECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHH-HHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 5078897899999999866628979889999999406679899999999999-9999847787889999999867
Q gi|254780567|r 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD-NLALSRGMGITRSLAAEVLKET 242 (246)
Q Consensus 169 ~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld-~~sl~~kr~ITi~lvk~vL~~~ 242 (246)
+++=-+.+++..|+.+.+..-++.|+++.+.-|++|+..++|-+..++.++= -+-+..+.-||...+++.|+.+
T Consensus 155 rl~fY~~~EL~~Iv~R~A~~L~~ei~~~~a~~IArrSRGTPRIAnRLLRRVRDfA~V~~~~~I~~~i~~~AL~~L 229 (305)
T TIGR00635 155 RLEFYTPEELAEIVSRSAGLLNIEIEQEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQGVITRDIALKALEML 229 (305)
T ss_pred HCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 402689878999987533441430077899999875478637888776766448887267873889999998862
No 22
>PRK08116 hypothetical protein; Validated
Probab=99.63 E-value=9.2e-16 Score=116.89 Aligned_cols=147 Identities=16% Similarity=0.154 Sum_probs=99.9
Q ss_pred CCCCCCEEECCCHHHHHHH----HHHHHCC--CCCEEEEECCCCCCHHHHHHHHHHHHCCC-----CHHHHHHH--H---
Q ss_conf 6884541653618999999----9851016--78849998787778688999999862762-----01356764--4---
Q gi|254780567|r 37 GISRDDLLVHSAIEQAVRL----IDSWPSW--PSRVVILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKS--L--- 100 (246)
Q Consensus 37 ~~~~dnFiv~~~N~~A~~~----i~~~~~~--~~~~l~i~G~~GsGKTHLl~a~~~~~~~~-----~~~~~~~~--~--- 100 (246)
..+|+||.+.+.++.|+.. +++|..+ ++..|+|||++|+|||||+.+++++.-.. +....... +
T Consensus 75 ~~tFeN~~~~~~~~~a~~~a~~Y~~~f~~~~~~~~GLll~G~~GtGKThLa~aIa~~l~~~g~~V~~~~~~~ll~~lk~~ 154 (262)
T PRK08116 75 NSTFENWLFRKGSEKAYKVAVKYVKKFEEMKKESVGLLLWGSPGNGKTYLAAAIANELIEKGVPVVFVNVPELLNRIKST 154 (262)
T ss_pred HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHH
T ss_conf 19222556895259999999999998987364686189989899989999999999999879939998899999999999
Q ss_pred -----------HHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHCCCCCEEEEECCCCCCHHH-HHHHHHHHHHH-
Q ss_conf -----------454666666533433210037---61033545554311234215640354320022-34566788521-
Q gi|254780567|r 101 -----------DSILIDTRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGV-CLPDLCSRLKA- 164 (246)
Q Consensus 101 -----------~~~~~~~~~~i~iddi~~~~~---~ee~lf~l~n~~~~~~~~iilts~~~p~~~~~-~l~DL~SRl~~- 164 (246)
....+...+++++||+-.... ..+.+|+++|..+.+++++++||+.++.+|.- ..++..||+..
T Consensus 155 ~~~~~~~~~~e~l~~l~~~dLLIiDDlG~e~~t~w~~e~lf~IIn~Ry~~~kptIiTTNl~~~eL~~~~~~Ri~sRl~e~ 234 (262)
T PRK08116 155 YNSEGKEDENEIIRALDNADLLILDDLGAEKDTEWVREKLYNIIDSRYRKGLPTIFTTNLSLEELKNQYGKRTYSRILEM 234 (262)
T ss_pred HHCCCCHHHHHHHHHHHCCCEEEEEHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 86356101999999861299899832214569878999999999999976999899879999999998637999999867
Q ss_pred CCEEEECCCCHHHHHHHHHHH
Q ss_conf 222450788978999999998
Q gi|254780567|r 165 ATVVKISLPDDDFLEKVIVKM 185 (246)
Q Consensus 165 g~~~~I~~pdde~~~~il~k~ 185 (246)
+..+++.-+ +-|..+-+..
T Consensus 235 ~~~v~~~G~--d~R~~~a~~k 253 (262)
T PRK08116 235 CTPVKNEGK--SYRREIAKEK 253 (262)
T ss_pred CEEEEEECC--CHHHHHHHHH
T ss_conf 789985177--8879999999
No 23
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.63 E-value=1.2e-14 Score=109.96 Aligned_cols=186 Identities=18% Similarity=0.151 Sum_probs=122.4
Q ss_pred CCCCEEECCCHHHHHHHHHHHHCCC-CCEEEEECCCCCCHHHHHHHHHHHHCCCCH-------HHHH-------------
Q ss_conf 8454165361899999998510167-884999878777868899999986276201-------3567-------------
Q gi|254780567|r 39 SRDDLLVHSAIEQAVRLIDSWPSWP-SRVVILVGPSGSGKSCLANIWSDKSRSTRF-------SNIA------------- 97 (246)
Q Consensus 39 ~~dnFiv~~~N~~A~~~i~~~~~~~-~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~-------~~~~------------- 97 (246)
+|++++ .|..+.+.+.+|.+.. -..+.+|||+|+|||.++++++++...... .+..
T Consensus 13 ~~~dvv---Gq~~i~~~L~~~~~~~~~phlLf~GPpG~GKTt~A~~lA~~l~~~~~~~~~~~~nasd~~~~~~~~i~~~~ 89 (337)
T PRK12402 13 LFEDIL---GQESVVDHLSALAASGNLPHLVVYGPSGSGKTAAVRALARELYGDPWENNFTYFNVSDFFDQGKKYLVEDP 89 (337)
T ss_pred CHHHHC---CCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCEEECCC
T ss_conf 799803---97999999999997799876988892984899999999999679975678333116531135640010166
Q ss_pred ----------------HHHHHH----------HHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf ----------------644454----------6666665334332100376-1033545554311234215640354320
Q gi|254780567|r 98 ----------------KSLDSI----------LIDTRKPVLLEDIDLLDFN-DTQLFHIINSIHQYDSSLLMTARTFPVS 150 (246)
Q Consensus 98 ----------------~~~~~~----------~~~~~~~i~iddi~~~~~~-ee~lf~l~n~~~~~~~~iilts~~~p~~ 150 (246)
...... ....++.+++|+.|.+... +.+|.-++.. .....+.+++++.+ .
T Consensus 90 ~~~~~~~~~~~~~~~~~d~i~~ii~~~a~~~p~~~~~KiiIlDEad~lt~~Aq~aLlk~lEe-~~~~~~fIl~t~~~-~- 166 (337)
T PRK12402 90 RFAHFYDDPKRKYKSVIDNFKHILKEYASMRPLSADYKLILFDNAEALREDAQQALRRIMER-YSETCRFIFSTTQP-S- 166 (337)
T ss_pred CHHHHHCCHHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHC-CCCCEEEEEECCCC-C-
T ss_conf 42344201533277378999999999861488778804999707131799999999988740-88766998723864-4-
Q ss_pred HHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 02234566788521222450788978999999998666289798899999994066798999999999999999847787
Q gi|254780567|r 151 WGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 (246)
Q Consensus 151 ~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~I 230 (246)
-..+-++||+ ..+.+.+|+++.....|.+.+...|+.+++++++.|++...+|+|.+...+. ..+...+..+
T Consensus 167 --~ii~tI~SRC---~~i~F~~~s~~~i~~~L~~I~~~E~i~~~~~~l~~ia~~s~GdlR~ain~Lq---~~~~~~~~~~ 238 (337)
T PRK12402 167 --KLIPPIRSRC---LPLFFRPVPDDEIRSVLESIAAAEGVEISDDGLDLIAYYAEGDLRKAILTLQ---LAAEAEGEVT 238 (337)
T ss_pred --CCCHHHHHHC---EEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHH---HHHHHCCCCC
T ss_conf --4752477624---4543589899999999999999849998999999999986998999999999---9987279977
Q ss_pred CHHHHHHH
Q ss_conf 88999999
Q gi|254780567|r 231 TRSLAAEV 238 (246)
Q Consensus 231 Ti~lvk~v 238 (246)
+-..+..+
T Consensus 239 ~~~~~~~~ 246 (337)
T PRK12402 239 TEAALEEL 246 (337)
T ss_pred CHHHHHHH
T ss_conf 18899998
No 24
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.48 E-value=5.6e-12 Score=93.59 Aligned_cols=210 Identities=18% Similarity=0.198 Sum_probs=142.7
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCHH-H----HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHH---
Q ss_conf 3415588877668845416536189-9----9999985101678849998787778688999999862762013567---
Q gi|254780567|r 26 EQLFFSFPRCLGISRDDLLVHSAIE-Q----AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIA--- 97 (246)
Q Consensus 26 ~Ql~l~~~~~~~~~~dnFiv~~~N~-~----A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~--- 97 (246)
++..++..+.|. ++++|+ |..+- . .+.+.+. -...-..+.+|||||.|||.|+++++++.+........
T Consensus 12 ~~~~~e~~lRP~-~l~efi-GQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~l 88 (332)
T COG2255 12 EEMKIERSLRPK-TLDEFI-GQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPAL 88 (332)
T ss_pred HHHHHHHCCCCC-CHHHHC-CHHHHHHHHHHHHHHHHH-CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEECCCCCC
T ss_conf 044443035865-488851-839999999999999984-49876747864799876888999999985677376366201
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHCC----------------CCCEEEEECCCCCCHHHHH
Q ss_conf -----6444546666665334332100376103-35455543112----------------3421564035432002234
Q gi|254780567|r 98 -----KSLDSILIDTRKPVLLEDIDLLDFNDTQ-LFHIINSIHQY----------------DSSLLMTARTFPVSWGVCL 155 (246)
Q Consensus 98 -----~~~~~~~~~~~~~i~iddi~~~~~~ee~-lf~l~n~~~~~----------------~~~iilts~~~p~~~~~~l 155 (246)
.......+...+++.+|.+|.++-.-|+ |+-........ ....++-++..+..+ .
T Consensus 89 eK~gDlaaiLt~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~l---t 165 (332)
T COG2255 89 EKPGDLAAILTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGML---T 165 (332)
T ss_pred CCHHHHHHHHHCCCCCCEEEEEHHHHCCHHHHHHHHHHHHHEEEEEEECCCCCCCEEECCCCCEEEEEECCCCCCC---C
T ss_conf 5726599998639867767772553147428989646753105778972487553476379981375101346645---6
Q ss_pred HHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC-CCCCHHH
Q ss_conf 566788521222450788978999999998666289798899999994066798999999999999999847-7878899
Q gi|254780567|r 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSL 234 (246)
Q Consensus 156 ~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~k-r~ITi~l 234 (246)
.-|+.|| |.+..++--+.+++..|+.+.+...++.++++.+.-|++|...+++-+..++.++-.++...+ -.|+...
T Consensus 166 ~PLrdRF--Gi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRIAnRLLrRVRDfa~V~~~~~I~~~i 243 (332)
T COG2255 166 NPLRDRF--GIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPRIANRLLRRVRDFAQVKGDGDIDRDI 243 (332)
T ss_pred CHHHHHC--CCEEEEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 3368862--86045405888999999998888738776857999999863699389999999999999981688204899
Q ss_pred HHHHHHHHH
Q ss_conf 999998674
Q gi|254780567|r 235 AAEVLKETQ 243 (246)
Q Consensus 235 vk~vL~~~~ 243 (246)
++++|+.+.
T Consensus 244 a~~aL~~L~ 252 (332)
T COG2255 244 ADKALKMLD 252 (332)
T ss_pred HHHHHHHHC
T ss_conf 999998729
No 25
>PRK06921 hypothetical protein; Provisional
Probab=99.47 E-value=1e-13 Score=104.30 Aligned_cols=141 Identities=13% Similarity=0.080 Sum_probs=93.6
Q ss_pred CCCCCCCEEECCCHH-------HHHHHHHHHHC---CCCCEEEEECCCCCCHHHHHHHHHHHH----CCCCHHHHHHHHH
Q ss_conf 668845416536189-------99999985101---678849998787778688999999862----7620135676444
Q gi|254780567|r 36 LGISRDDLLVHSAIE-------QAVRLIDSWPS---WPSRVVILVGPSGSGKSCLANIWSDKS----RSTRFSNIAKSLD 101 (246)
Q Consensus 36 ~~~~~dnFiv~~~N~-------~A~~~i~~~~~---~~~~~l~i~G~~GsGKTHLl~a~~~~~----~~~~~~~~~~~~~ 101 (246)
...+|+||......+ .|.+.+.++.+ ...+.++++|++|+|||||+.+++++- +...++.......
T Consensus 78 ~k~nF~nF~~d~~~~~~k~a~~~a~eY~~~F~~i~~~~~~~l~f~G~~G~GKThLa~aIa~~Ll~~~~~~Vly~~~~~~~ 157 (265)
T PRK06921 78 RKLTFKNFKTEGKPQAIKDAYECAVEYVKDFEKIQGCRKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGF 157 (265)
T ss_pred HHCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEHHHHH
T ss_conf 74776433446776169999999999999778760777662799728989889999999999999629719998879999
Q ss_pred -------------HHHHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf -------------546666665334332--------10037610335455543112342156403543200223456678
Q gi|254780567|r 102 -------------SILIDTRKPVLLEDI--------DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 (246)
Q Consensus 102 -------------~~~~~~~~~i~iddi--------~~~~~~ee~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~S 160 (246)
.......+++++||+ ..-.|..+.+|.++|..+.+++++++||...+.++....+.+.|
T Consensus 158 ~~lk~~~~~~~~~l~~~~~~dlLIIDDLfk~~~G~e~~te~~~~~lf~iIN~Ry~~~kptIiSSNl~~~~L~~i~e~i~S 237 (265)
T PRK06921 158 GDLKDDFDLLEAKLNRMKKVEVLFIDDLFKPVNGKPRATEWQIEQTYSVVNYRYLNHKPILISSELTIDELLDIDEALGS 237 (265)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 99998888899999986329999982212234798789889999999999999976999899868998999876379888
Q ss_pred HHHHCC---EEEECCCCHH
Q ss_conf 852122---2450788978
Q gi|254780567|r 161 RLKAAT---VVKISLPDDD 176 (246)
Q Consensus 161 Rl~~g~---~~~I~~pdde 176 (246)
|+-.+- .+.++-.+.+
T Consensus 238 Ri~emc~~~~v~~~G~~~~ 256 (265)
T PRK06921 238 RIVEMCKDYLVIINGDSFL 256 (265)
T ss_pred HHHHHCCCCEEEEECCHHH
T ss_conf 8999725748999674113
No 26
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=99.47 E-value=1.4e-12 Score=97.34 Aligned_cols=192 Identities=15% Similarity=0.159 Sum_probs=132.0
Q ss_pred CCCCCCCCCEEECCCHHHHHHHHHHHHC-CCC-CEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHH----------H--
Q ss_conf 7766884541653618999999985101-678-8499987877786889999998627620135676----------4--
Q gi|254780567|r 34 RCLGISRDDLLVHSAIEQAVRLIDSWPS-WPS-RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAK----------S-- 99 (246)
Q Consensus 34 ~~~~~~~dnFiv~~~N~~A~~~i~~~~~-~~~-~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~----------~-- 99 (246)
..|. +|++-+ |. +..+..+++-.. +-- ....+.||.|+|||..++++|+.-+.. -..... .
T Consensus 8 yRP~-~F~d~~-GQ--~~iv~tL~NAi~~~ri~HAYLF~GpRGtGKTS~ARIfAKaLNC~-~~~~~PCn~C~~C~~i~~g 82 (363)
T TIGR02397 8 YRPQ-TFEDVI-GQ--EHIVKTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQ-GPDGEPCNECESCKEINSG 82 (363)
T ss_pred CCCC-CCCCCC-CC--HHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHCC
T ss_conf 3788-611023-51--79999999999718966234502859976355899999986588-7877877775022776528
Q ss_pred -------------HHH-------------HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCC-EEEEECCCCCCHH
Q ss_conf -------------445-------------4666666533433210037610335455543112342-1564035432002
Q gi|254780567|r 100 -------------LDS-------------ILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSS-LLMTARTFPVSWG 152 (246)
Q Consensus 100 -------------~~~-------------~~~~~~~~i~iddi~~~~~~ee~lf~l~n~~~~~~~~-iilts~~~p~~~~ 152 (246)
... .....+++.+||.+|++.. .++=-++-.+.+--.. +.+.++..|..+.
T Consensus 83 ~~~DviEiDAASN~gVD~IR~l~e~v~y~P~~~kYKvYIIDEVHMLS~--~AFNALLKTLEEPP~hV~FIlATTE~~KiP 160 (363)
T TIGR02397 83 SSLDVIEIDAASNNGVDDIRELRENVKYAPSKGKYKVYIIDEVHMLSK--SAFNALLKTLEEPPEHVVFILATTEPHKIP 160 (363)
T ss_pred CCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCH--HHHHHHHHHHCCCCCCEEEEEECCCHHHCC
T ss_conf 986668864865687889999987303687554433588732302865--689998765227987628887348711205
Q ss_pred HHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC---C
Q ss_conf 2345667885212224507889789999999986662897988999999940667989999999999999998477---8
Q gi|254780567|r 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM---G 229 (246)
Q Consensus 153 ~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr---~ 229 (246)
+-..||+. .+.++..+.+.+...|++.+...||.+++++++.||++.++|+|++.++++++ +...+. .
T Consensus 161 ---~TIlSRCQ---rF~Fk~i~~~~i~~~L~~I~~~E~I~~e~~AL~~IA~~a~GS~RDAlsllDQ~---~~~~~~~DG~ 231 (363)
T TIGR02397 161 ---ATILSRCQ---RFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSMRDALSLLDQA---ISFGNGSDGK 231 (363)
T ss_pred ---CCCEEECE---EECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHH---HHHCCCCCCC
T ss_conf ---54021000---31267899899999999999870883177899999996289610688999999---9826887886
Q ss_pred CCHHHHHHHHHH
Q ss_conf 788999999986
Q gi|254780567|r 230 ITRSLAAEVLKE 241 (246)
Q Consensus 230 ITi~lvk~vL~~ 241 (246)
||...|.++|.=
T Consensus 232 i~~~~v~~~lGl 243 (363)
T TIGR02397 232 ITYEDVNEMLGL 243 (363)
T ss_pred CCHHHHHHHHCC
T ss_conf 578999998357
No 27
>KOG2028 consensus
Probab=99.46 E-value=2.3e-12 Score=95.99 Aligned_cols=204 Identities=18% Similarity=0.214 Sum_probs=131.1
Q ss_pred CCCCCCCCCCCCCCCEE-----ECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC---CHHHHHHH
Q ss_conf 15588877668845416-----53618999999985101678849998787778688999999862762---01356764
Q gi|254780567|r 28 LFFSFPRCLGISRDDLL-----VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST---RFSNIAKS 99 (246)
Q Consensus 28 l~l~~~~~~~~~~dnFi-----v~~~N~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~---~~~~~~~~ 99 (246)
++|.-...|+ ++++|+ +|+ +-...++|+. ..-+.+++|||+|+|||.|++.+++..+.. ++...+..
T Consensus 126 ~PLaermRPk-tL~dyvGQ~hlv~q-~gllrs~ieq---~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~ 200 (554)
T KOG2028 126 KPLAERMRPK-TLDDYVGQSHLVGQ-DGLLRSLIEQ---NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN 200 (554)
T ss_pred CCHHHHCCCC-HHHHHCCHHHHCCC-CHHHHHHHHC---CCCCCEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEEECCC
T ss_conf 9745541843-68775053441483-2689999870---88870588669987658899999860577742799974145
Q ss_pred -----HHHH---------HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHC
Q ss_conf -----4454---------66666653343321003761033545554311234215640354320022345667885212
Q gi|254780567|r 100 -----LDSI---------LIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 (246)
Q Consensus 100 -----~~~~---------~~~~~~~i~iddi~~~~~~ee~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~~g 165 (246)
.... ......++.+|.+|.++..|+.+|--. .+.|.-+++-+....+..... .-|.||+.
T Consensus 201 a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD~fLP~---VE~G~I~lIGATTENPSFqln-~aLlSRC~-- 274 (554)
T KOG2028 201 AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQDTFLPH---VENGDITLIGATTENPSFQLN-AALLSRCR-- 274 (554)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHCCCCE---ECCCCEEEEECCCCCCCCCHH-HHHHHCCC--
T ss_conf 661889999999887876524406987377655323211003421---306706998536689760112-77873160--
Q ss_pred CEEEECCCCHHHHHHHHHHHHH-----HC--------CCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHH-HHHHC----
Q ss_conf 2245078897899999999866-----62--------897988999999940667989999999999999-99847----
Q gi|254780567|r 166 TVVKISLPDDDFLEKVIVKMFA-----DR--------QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL-ALSRG---- 227 (246)
Q Consensus 166 ~~~~I~~pdde~~~~il~k~~~-----~r--------~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~-sl~~k---- 227 (246)
|+.++++.-+....||.+..+ .| .+.+++.+++|++.....+.+...++++..-.. +...+
T Consensus 275 -VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~Lems~~m~~tr~g~~~~ 353 (554)
T KOG2028 275 -VFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNALEMSLSMFCTRSGQSSR 353 (554)
T ss_pred -EEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf -6673368889999999999876321025688999831245688999998704731888877899999988752477656
Q ss_pred CCCCHHHHHHHHHHHH
Q ss_conf 7878899999998674
Q gi|254780567|r 228 MGITRSLAAEVLKETQ 243 (246)
Q Consensus 228 r~ITi~lvk~vL~~~~ 243 (246)
-.+++.-||+.|....
T Consensus 354 ~~lSidDvke~lq~s~ 369 (554)
T KOG2028 354 VLLSIDDVKEGLQRSH 369 (554)
T ss_pred CEECHHHHHHHHHHCC
T ss_conf 4002888999985312
No 28
>KOG0989 consensus
Probab=99.43 E-value=3.4e-12 Score=94.95 Aligned_cols=206 Identities=17% Similarity=0.200 Sum_probs=130.7
Q ss_pred CCCCCCCCCCCCCCCCCCC---CCCCEEECCCHHHHHHHHHHHHCC-CCCEEEEECCCCCCHHHHHHHHHHHHCC-CCHH
Q ss_conf 5348103415588877668---845416536189999999851016-7884999878777868899999986276-2013
Q gi|254780567|r 20 QPKNKEEQLFFSFPRCLGI---SRDDLLVHSAIEQAVRLIDSWPSW-PSRVVILVGPSGSGKSCLANIWSDKSRS-TRFS 94 (246)
Q Consensus 20 ~~~~~~~Ql~l~~~~~~~~---~~dnFiv~~~N~~A~~~i~~~~~~-~~~~l~i~G~~GsGKTHLl~a~~~~~~~-~~~~ 94 (246)
+++...+|-+....+-++| +||++. | -+.++..+.+.... ....+.+|||+|.|||.-+.+++.+-.. ..+.
T Consensus 12 ~~~~~~~~~p~~~swteKYrPkt~de~~-g--Qe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~ 88 (346)
T KOG0989 12 EGEESDKSVPKHRSWTEKYRPKTFDELA-G--QEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFP 88 (346)
T ss_pred CCCCCCCCCCCCCCHHHHHCCCCHHHHC-C--HHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 5333235687765537874787377650-1--599999999998606886078668999867689999999855742355
Q ss_pred HHHHH------------------H----------HHHHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 56764------------------4----------4546666665334332100376-10335455543112342156403
Q gi|254780567|r 95 NIAKS------------------L----------DSILIDTRKPVLLEDIDLLDFN-DTQLFHIINSIHQYDSSLLMTAR 145 (246)
Q Consensus 95 ~~~~~------------------~----------~~~~~~~~~~i~iddi~~~~~~-ee~lf~l~n~~~~~~~~iilts~ 145 (246)
+.... + ....-..++++++|+.+.+..+ +-+|-..+...-.+-..+++++.
T Consensus 89 ~rvl~lnaSderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcny 168 (346)
T KOG0989 89 CRVLELNASDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNY 168 (346)
T ss_pred CCHHHHCCCCCCCCCCHHHHHCCHHHHHHCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 54243136600143100665237998750255656788986328997416453099999999998625466599997388
Q ss_pred CCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 54320022345667885212224507889789999999986662897988999999940667989999999999999998
Q gi|254780567|r 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 (246)
Q Consensus 146 ~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~ 225 (246)
+.-...-+.||++. +..++++++.....|++.|.+.++.++++++++|+++...|++.+ +..|...|+
T Consensus 169 -----lsrii~pi~SRC~K---frFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~A---it~Lqsls~- 236 (346)
T KOG0989 169 -----LSRIIRPLVSRCQK---FRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRA---ITTLQSLSL- 236 (346)
T ss_pred -----HHHCCHHHHHHHHH---HCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHH---HHHHHHHHC-
T ss_conf -----56477287746777---128876447899999999888589978789999999738728999---999998610-
Q ss_pred HCCCCCHHHHHHHHH
Q ss_conf 477878899999998
Q gi|254780567|r 226 RGMGITRSLAAEVLK 240 (246)
Q Consensus 226 ~kr~ITi~lvk~vL~ 240 (246)
.+++||.+++-+.+.
T Consensus 237 ~gk~It~~~~~e~~~ 251 (346)
T KOG0989 237 LGKRITTSLVNEELA 251 (346)
T ss_pred CCCCCCHHHHHHHHH
T ss_conf 476364588999986
No 29
>PRK07952 DNA replication protein DnaC; Validated
Probab=99.43 E-value=2.7e-13 Score=101.69 Aligned_cols=142 Identities=11% Similarity=0.085 Sum_probs=94.8
Q ss_pred CCCC---CCCCCCEEECCCHHH-HHH----HHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC----CC-HHHHHH-
Q ss_conf 8776---688454165361899-999----998510167884999878777868899999986276----20-135676-
Q gi|254780567|r 33 PRCL---GISRDDLLVHSAIEQ-AVR----LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS----TR-FSNIAK- 98 (246)
Q Consensus 33 ~~~~---~~~~dnFiv~~~N~~-A~~----~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~----~~-~~~~~~- 98 (246)
+.++ .-+||||.+.+..+. |++ .++++.. ....|+++|++|+|||||+.+++++.-. +. ......
T Consensus 58 gI~~~~~~~~Feny~~~~~~q~~al~~a~~y~enf~~-~~~gLlF~G~~GTGKThLA~aIan~Li~~G~sVlf~t~~dLl 136 (242)
T PRK07952 58 GIRPLHQNCSFENYRVECEGQMNALSKARQYVEEFDG-NIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIM 136 (242)
T ss_pred CCCHHHHCCEEECEECCCHHHHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHH
T ss_conf 9985772884212015877789999999999986543-887179978999978999999999999879949997799999
Q ss_pred --------H---HH---HHHHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHH-HHHHH
Q ss_conf --------4---44---546666665334332100376---103354555431123421564035432002234-56678
Q gi|254780567|r 99 --------S---LD---SILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCL-PDLCS 160 (246)
Q Consensus 99 --------~---~~---~~~~~~~~~i~iddi~~~~~~---ee~lf~l~n~~~~~~~~iilts~~~p~~~~~~l-~DL~S 160 (246)
. .. ...+...+++++||+-....+ .+.||+++|..+...++++++++.++.++...+ ++..|
T Consensus 137 ~~lr~t~~~~~~~e~~~l~~l~~~dLLIiDdlG~e~~t~~~~~~lf~iId~Ry~~~kp~IitTNl~~~eL~~~lGeR~~d 216 (242)
T PRK07952 137 SAMKDTFRNSETSEEQLLNDLSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLGERVMD 216 (242)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHH
T ss_conf 99999980687569999998631898987301466588889999999999999716988998179999999997089999
Q ss_pred HHH--HCCEEEECCCCH
Q ss_conf 852--122245078897
Q gi|254780567|r 161 RLK--AATVVKISLPDD 175 (246)
Q Consensus 161 Rl~--~g~~~~I~~pdd 175 (246)
||. .|..+...=++.
T Consensus 217 Rl~~~~~~~l~f~w~Sy 233 (242)
T PRK07952 217 RMRLGNSLWVIFNWDSY 233 (242)
T ss_pred HHHHCCCEEEEECCCCC
T ss_conf 99727985996067050
No 30
>PRK06835 DNA replication protein DnaC; Validated
Probab=99.42 E-value=1.2e-12 Score=97.76 Aligned_cols=126 Identities=16% Similarity=0.185 Sum_probs=84.7
Q ss_pred HHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHC-----CCCHHHHHHH---------------HHHHHHHHHHHHHH
Q ss_conf 999851016788499987877786889999998627-----6201356764---------------44546666665334
Q gi|254780567|r 54 RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR-----STRFSNIAKS---------------LDSILIDTRKPVLL 113 (246)
Q Consensus 54 ~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~-----~~~~~~~~~~---------------~~~~~~~~~~~i~i 113 (246)
..++++.. +...|++||++|+|||||+.++|++.- ..|..+.... .....+...+++++
T Consensus 174 ~fi~~F~~-~~~nLlf~G~~G~GKTfLa~~IA~ell~~g~sViy~ta~~L~~~l~~~~~~~~~~~~~~~~~l~~~DLLII 252 (330)
T PRK06835 174 NFIKNFDK-NNENLLFYGNTGTGKTFLSNCIAKELLDRGKTVIYRTSDELIENLREIRFNNDNDAPELEDLLINCDLLII 252 (330)
T ss_pred HHHHHCCC-CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCEEEE
T ss_conf 99872478-88866988999998899999999999987994999629999999999754576448999999961898997
Q ss_pred HHHHCCCC---CCHHHHHHHHHHHCCCCCEEEEECCCCCCHHH-HHHHHHHHHHH-CCEEEECCCCHHHHHH
Q ss_conf 33210037---61033545554311234215640354320022-34566788521-2224507889789999
Q gi|254780567|r 114 EDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGV-CLPDLCSRLKA-ATVVKISLPDDDFLEK 180 (246)
Q Consensus 114 ddi~~~~~---~ee~lf~l~n~~~~~~~~iilts~~~p~~~~~-~l~DL~SRl~~-g~~~~I~~pdde~~~~ 180 (246)
||+-.... ....||+++|.....++++++|++.++.+|.- ..++..||+.+ ...+++--.|--.+..
T Consensus 253 DDLG~E~~t~~~~~~Lf~iIN~R~~~~k~tIITTNl~~~eL~~~y~eRi~SRi~~~~~~~~~~G~DiR~~k~ 324 (330)
T PRK06835 253 DDLGTESITEFSKTELFNLINKRLLMNKKMIISTNLSLEELLKTYSERIASRLLGNFTLLKFYGEDIRIKKN 324 (330)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHH
T ss_conf 210345588689999999999998679997998899989999987489999998185499852655899998
No 31
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.42 E-value=5.7e-12 Score=93.56 Aligned_cols=187 Identities=13% Similarity=0.157 Sum_probs=122.1
Q ss_pred CCCCEEECCCHHHHHHHHHHH-HCCC-CCEEEEECCCCCCHHHHHHHHHHHHCCCCHHH----------HHH--H-----
Q ss_conf 845416536189999999851-0167-88499987877786889999998627620135----------676--4-----
Q gi|254780567|r 39 SRDDLLVHSAIEQAVRLIDSW-PSWP-SRVVILVGPSGSGKSCLANIWSDKSRSTRFSN----------IAK--S----- 99 (246)
Q Consensus 39 ~~dnFiv~~~N~~A~~~i~~~-~~~~-~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~----------~~~--~----- 99 (246)
+|++.+ |. ..++..+.+. ..+. .....++||.|+|||.++.++|..-.+.-... ... .
T Consensus 14 ~F~eII-GQ--e~iv~~L~nAI~~~RiaHAYLFsGPrGvGKTTlArifAkaLnC~~~~~~dpCg~C~sC~~I~~g~h~Dv 90 (613)
T PRK05896 14 NFKQII-GQ--ELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDI 90 (613)
T ss_pred CHHHHC-CC--HHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCE
T ss_conf 765523-82--999999999998499762277558998488999999999966999999998888878999856999986
Q ss_pred ----------HH-----------HHHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHCCC-CCEEEEECCCCCCHHHHHH
Q ss_conf ----------44-----------546666665334332100376-103354555431123-4215640354320022345
Q gi|254780567|r 100 ----------LD-----------SILIDTRKPVLLEDIDLLDFN-DTQLFHIINSIHQYD-SSLLMTARTFPVSWGVCLP 156 (246)
Q Consensus 100 ----------~~-----------~~~~~~~~~i~iddi~~~~~~-ee~lf~l~n~~~~~~-~~iilts~~~p~~~~~~l~ 156 (246)
.+ ......++++++|++|.+... ..+|+-++ .+-- ..+.+..+..|..+ +|
T Consensus 91 iEIdaasn~gIDeIReLie~~~~~P~~gkyKV~IIDEah~Ln~~AaNALLKtL---EEPP~~viFIL~Ttep~KL---Lp 164 (613)
T PRK05896 91 VELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTL---EEPPKHVVFIFATTEFQKI---PL 164 (613)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCHHHCCHHHHHHHHHHC---CCCCCCCEEEEEECCHHHC---CH
T ss_conf 88406555788999999997085875799459998162217999999999853---4898783799982881549---37
Q ss_pred HHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 66788521222450788978999999998666289798899999994066798999999999999999847787889999
Q gi|254780567|r 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236 (246)
Q Consensus 157 DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~ITi~lvk 236 (246)
-..||+. .+...+.+.+.+...|+..+...++.+++++++.|+++.++|+|++.++++++-.+ .+..||+.-|+
T Consensus 165 TIlSRCQ---rf~Fkri~~~~I~~~L~~I~~kE~i~ie~~AL~~Ia~~adGs~RDAlslLdQ~~~~---~~~~it~~~v~ 238 (613)
T PRK05896 165 TIISRCQ---RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTF---KNKKIDIEDIN 238 (613)
T ss_pred HHHHCCC---CEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH---CCCCCCHHHHH
T ss_conf 6640355---00178899899999999999973998789999999997688487898899999983---56886299999
Q ss_pred HHHH
Q ss_conf 9998
Q gi|254780567|r 237 EVLK 240 (246)
Q Consensus 237 ~vL~ 240 (246)
+++.
T Consensus 239 ~~~g 242 (613)
T PRK05896 239 KTFG 242 (613)
T ss_pred HHHC
T ss_conf 9967
No 32
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.41 E-value=2.8e-11 Score=89.30 Aligned_cols=188 Identities=14% Similarity=0.166 Sum_probs=126.4
Q ss_pred CCCCEEECCCHHHHHHHHHHHHCC-CC-CEEEEECCCCCCHHHHHHHHHHHHCCCCHH----------HHH---------
Q ss_conf 845416536189999999851016-78-849998787778688999999862762013----------567---------
Q gi|254780567|r 39 SRDDLLVHSAIEQAVRLIDSWPSW-PS-RVVILVGPSGSGKSCLANIWSDKSRSTRFS----------NIA--------- 97 (246)
Q Consensus 39 ~~dnFiv~~~N~~A~~~i~~~~~~-~~-~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~----------~~~--------- 97 (246)
+|++-+ |. ..++..+.+.... .- +...++||.|+|||..++++++.-+..... +..
T Consensus 14 ~f~dvv-gQ--~~v~~~L~n~i~~~~i~hayLf~GprG~GKTs~Ari~akalnc~~~~~~~pC~~C~~C~~i~~g~~~Dv 90 (541)
T PRK05563 14 TFEDVV-GQ--EHITTTLKNQIINNRIAHAYLFCGTRGTGKTSTAKIFAKAVNCLNPQDGEPCNECEICKKINEGLLMDV 90 (541)
T ss_pred CHHHHC-CC--HHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCE
T ss_conf 776624-84--999999999998499320453038799589999999999957999888985751488999856898873
Q ss_pred ------HHH--HH-----------HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC-CCCEEEEECCCCCCHHHHHHH
Q ss_conf ------644--45-----------4666666533433210037610335455543112-342156403543200223456
Q gi|254780567|r 98 ------KSL--DS-----------ILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY-DSSLLMTARTFPVSWGVCLPD 157 (246)
Q Consensus 98 ------~~~--~~-----------~~~~~~~~i~iddi~~~~~~ee~lf~l~n~~~~~-~~~iilts~~~p~~~~~~l~D 157 (246)
... +. .....++++++|.+|.+. ..++.-++-.+.+- ...+.+.++..|..+ .+-
T Consensus 91 ~Eidaas~~gvd~iR~~~~~~~~~p~~~~~Kv~IiDEvhmls--~~a~nallKtlEePp~~~~Filatte~~ki---~~t 165 (541)
T PRK05563 91 IEIDAASNNGVDDIREIIENVKYPPQEGKYKVYIMDEVHMLS--QGAVNAFLKTLEEPPSNVIFILATTDPQKL---PIT 165 (541)
T ss_pred EEECCCCCCCHHHHHHHHHHCEECCCCCCEEEEEEECCCCCC--HHHHHHHHHHHHCCCCCCEEEEECCCCCCC---CHH
T ss_conf 662444447889999999761048767870599997723389--999999999985487775699976984427---455
Q ss_pred HHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 67885212224507889789999999986662897988999999940667989999999999999998477878899999
Q gi|254780567|r 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237 (246)
Q Consensus 158 L~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~ITi~lvk~ 237 (246)
+.||+. .+...+++.+.+...|++.+...|+.++++++..|+++.+.++|++.++++++- |+ .+.+||...|.+
T Consensus 166 I~SRcq---~f~f~~i~~~~i~~~L~~I~~~E~i~~~~~al~lIa~~s~GsmRDAlslLdQ~i--s~-~~~~it~~~v~~ 239 (541)
T PRK05563 166 ILSRCQ---RFDFKRIKVKDIFKRLRKIVEEQGIFADDKSLNLIARMSDGAMRDALSILDQAI--SM-GDGKVDYDDVVS 239 (541)
T ss_pred HHHHEE---EEEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH--HH-CCCCCCHHHHHH
T ss_conf 674213---577543899999999999999849998789999999745997788999999999--83-599866999999
Q ss_pred HHH
Q ss_conf 998
Q gi|254780567|r 238 VLK 240 (246)
Q Consensus 238 vL~ 240 (246)
+|.
T Consensus 240 ~lG 242 (541)
T PRK05563 240 MLG 242 (541)
T ss_pred HHC
T ss_conf 968
No 33
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.40 E-value=3.5e-11 Score=88.67 Aligned_cols=175 Identities=16% Similarity=0.248 Sum_probs=117.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHH----------------HHHHHHHHHHHHHHHHCCCCCC---
Q ss_conf 788499987877786889999998627620135676444----------------5466666653343321003761---
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLD----------------SILIDTRKPVLLEDIDLLDFND--- 123 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~i~iddi~~~~~~e--- 123 (246)
|-+.+.+|||||+|||.|++|+|++.++.++......+. .....+..++.+|.++.+....
T Consensus 165 pPkGvLLyGPPGtGKTllAkAvA~e~~~~fi~v~~s~l~sk~vGesek~vr~lF~~Ar~~aP~IiFiDEiDai~~~R~~~ 244 (390)
T PRK03992 165 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDS 244 (390)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHCCCCCC
T ss_conf 99727868989997899999999874888799667997524541799999999999997099089714325663356778
Q ss_pred ------H------HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHH-HHHHHCCEEEECCCCHHHHHHHHHHHHHHCC
Q ss_conf ------0------33545554311234215640354320022345667-8852122245078897899999999866628
Q gi|254780567|r 124 ------T------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 (246)
Q Consensus 124 ------e------~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~-SRl~~g~~~~I~~pdde~~~~il~k~~~~r~ 190 (246)
+ +|+.-++.+...+.-+++.++..|..++-.+ ++ .||- ..++++.||.+.|..|++.++. +
T Consensus 245 ~~~g~~ev~r~l~qLL~emDG~~~~~~V~VIaATNrpd~LDpAl--lRpGRFD--r~I~iplPd~~~R~~Ilki~~~--~ 318 (390)
T PRK03992 245 GTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRPDILDPAL--LRPGRFD--RIIEVPLPDEEGRLEILKIHTR--K 318 (390)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHCCHHH--HCCCCCC--EEEEECCCCHHHHHHHHHHHHC--C
T ss_conf 88620889999999999744877778827996069810059777--5477652--3887089499999999999847--9
Q ss_pred CCCCHHH-HHHHHHCCC-CCHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHH
Q ss_conf 9798899-999994066-7989999999999999998477-878899999998674
Q gi|254780567|r 191 IFIDKKL-AAYIVQRME-RSLVFAEKLVDKMDNLALSRGM-GITRSLAAEVLKETQ 243 (246)
Q Consensus 191 i~l~~~v-~~yl~~r~~-Rs~~~l~~~l~~Ld~~sl~~kr-~ITi~lvk~vL~~~~ 243 (246)
+.++++| ++.++++.+ -|-.++..+...---.++..+| .||..-..++++.-.
T Consensus 319 ~~l~~dvdl~~lA~~T~G~SGADI~~lc~EA~m~Air~~r~~i~~~Df~~Ai~kv~ 374 (390)
T PRK03992 319 MNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTEVTMEDFLKAIEKVM 374 (390)
T ss_pred CCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 99998889999997687998999999999999999985898608999999999996
No 34
>PRK07270 DNA polymerase III subunits gamma and tau; Validated
Probab=99.38 E-value=1.8e-11 Score=90.51 Aligned_cols=189 Identities=16% Similarity=0.216 Sum_probs=124.1
Q ss_pred CCCCEEECCCHHHHHHHHHH-HHCCCCCE-EEEECCCCCCHHHHHHHHHHHHCCCCH----------HHHHH--------
Q ss_conf 84541653618999999985-10167884-999878777868899999986276201----------35676--------
Q gi|254780567|r 39 SRDDLLVHSAIEQAVRLIDS-WPSWPSRV-VILVGPSGSGKSCLANIWSDKSRSTRF----------SNIAK-------- 98 (246)
Q Consensus 39 ~~dnFiv~~~N~~A~~~i~~-~~~~~~~~-l~i~G~~GsGKTHLl~a~~~~~~~~~~----------~~~~~-------- 98 (246)
+|++.+ |. +.+...+.+ +..+.-.. ..++||.|+|||.++.++++..+.... .+...
T Consensus 13 ~F~dvv-GQ--e~i~~~L~nal~~~ri~HAyLF~GP~GtGKts~ArifAkaLnC~~~~~~~pC~~C~~C~~i~~g~~~Dv 89 (557)
T PRK07270 13 TFDEMV-GQ--EVVATTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAMNCPNQVDGEPCNNCDICRDITNGSLEDV 89 (557)
T ss_pred CHHHHC-CH--HHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCE
T ss_conf 876714-81--999999999998599540442108998689999999999957999899998887779999875899974
Q ss_pred --------H-HHH-----------HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEE-EEECCCCCCHHHHHHH
Q ss_conf --------4-445-----------466666653343321003761033545554311234215-6403543200223456
Q gi|254780567|r 99 --------S-LDS-----------ILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLL-MTARTFPVSWGVCLPD 157 (246)
Q Consensus 99 --------~-~~~-----------~~~~~~~~i~iddi~~~~~~ee~lf~l~n~~~~~~~~ii-lts~~~p~~~~~~l~D 157 (246)
. .+. .....++++++|++|.+.. ++.--++-.+.+-...++ +.....|.. .++-
T Consensus 90 iEidaas~~gVd~IRei~~~~~~~P~~~~yKV~IIDEah~Ls~--~A~NALLKtLEEPP~~~vFIL~Ttep~k---Il~T 164 (557)
T PRK07270 90 IEIDAASNNGVDEIRDIRDKSTYAPSRATYKVYIIDEVHMLST--GAFNALLKTLEEPTENVVFILATTELHK---IPAT 164 (557)
T ss_pred EEECCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHCCH--HHHHHHHHHHHCCCCCEEEEEEECCHHH---CCHH
T ss_conf 8734777678899999999842387778838999714453499--9999899985289987699998499475---9288
Q ss_pred HHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 67885212224507889789999999986662897988999999940667989999999999999998477878899999
Q gi|254780567|r 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237 (246)
Q Consensus 158 L~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~ITi~lvk~ 237 (246)
++||+. .+...+.+.+....-|++.+...++.++++++.+|+++.+.++|++.+++++. .|+..+..||...|.+
T Consensus 165 I~SRCQ---rf~F~~i~~~~i~~~L~~I~~~E~i~~~~~aL~~Ia~~a~G~mRdAlsiLdQ~--~s~~~~~~it~~~v~~ 239 (557)
T PRK07270 165 ILSRVQ---RFEFKSIKTKAIREHLAWILDKEGISFEVEALNLIARRAEGGMRDALSILDQA--LSLSQDNQVTIAIAEE 239 (557)
T ss_pred HHHHHH---HCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH--HHCCCCCCCCHHHHHH
T ss_conf 874300---01088899999999999999983998699999999997799687899999999--9717999767999999
Q ss_pred HHH
Q ss_conf 998
Q gi|254780567|r 238 VLK 240 (246)
Q Consensus 238 vL~ 240 (246)
++.
T Consensus 240 ~~G 242 (557)
T PRK07270 240 ITG 242 (557)
T ss_pred HHC
T ss_conf 968
No 35
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.36 E-value=4.8e-11 Score=87.88 Aligned_cols=195 Identities=14% Similarity=0.119 Sum_probs=127.3
Q ss_pred CCCCCCCCCCCCCEEECCCHHHHHHHHHHHHC-CCC-CEEEEECCCCCCHHHHHHHHHHHHCCCCHH----------HHH
Q ss_conf 58887766884541653618999999985101-678-849998787778688999999862762013----------567
Q gi|254780567|r 30 FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPS-WPS-RVVILVGPSGSGKSCLANIWSDKSRSTRFS----------NIA 97 (246)
Q Consensus 30 l~~~~~~~~~~dnFiv~~~N~~A~~~i~~~~~-~~~-~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~----------~~~ 97 (246)
+-....|. +|++.+ |. ..++..+.+... +.- ....++||.|+|||.++.++|+.-+...-. +..
T Consensus 6 la~KYRP~-~F~dvv-GQ--e~vv~~L~nai~~~rl~HAyLFsGprG~GKTt~ArilAk~LnC~~~~~~~PCg~C~sC~~ 81 (560)
T PRK06647 6 TATKRRPR-DFNSLE-GQ--DFVVETLKHSIEKNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTIMPCGECFSCKS 81 (560)
T ss_pred HHHHHCCC-CHHHHC-CC--HHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf 77642898-654403-94--999999999997499774366328998789999999999965999999888878878888
Q ss_pred ---------------H--HHH--H---------HHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHCCCC-CEEEEECCC
Q ss_conf ---------------6--444--5---------46666665334332100376-1033545554311234-215640354
Q gi|254780567|r 98 ---------------K--SLD--S---------ILIDTRKPVLLEDIDLLDFN-DTQLFHIINSIHQYDS-SLLMTARTF 147 (246)
Q Consensus 98 ---------------~--~~~--~---------~~~~~~~~i~iddi~~~~~~-ee~lf~l~n~~~~~~~-~iilts~~~ 147 (246)
. ..+ . .....++++++|++|.+... ..+|.-++. +-.. .+.+.++..
T Consensus 82 i~~g~~~DviEidaasn~~VddIR~l~e~v~~~P~~~~yKV~IIDEahmLt~~A~NALLKtLE---EPP~~~~FILaTte 158 (560)
T PRK06647 82 IDNDSSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIE---EPPPYIVFIFATTE 158 (560)
T ss_pred HHCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHCCHHHHHHHHHHHH---CCCCCEEEEEECCC
T ss_conf 745999875764364548889999999986328766870699964656559999999999863---48875599997799
Q ss_pred CCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 32002234566788521222450788978999999998666289798899999994066798999999999999999847
Q gi|254780567|r 148 PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 (246)
Q Consensus 148 p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~k 227 (246)
|..+ ++-..||+. .+...+++.+....-|++.+...++.++++++..|+++...++|++.++++++-.+ .+
T Consensus 159 ~~KI---~~TI~SRCQ---~f~Fk~i~~~~I~~~L~~I~~~E~i~~e~~AL~lIa~~a~Gs~RDalslldq~i~~---~~ 229 (560)
T PRK06647 159 VHKL---PATIKSRCQ---HFNFRLLSLEKIYEMLKKVCLEDDIKYEDEALKWIAYKSGGSVRDAYTLFDQIVSF---SN 229 (560)
T ss_pred HHHC---HHHHHHHHE---EEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHC---CC
T ss_conf 4768---489996510---41055599999999999999867988799999999997789588899999999960---79
Q ss_pred CCCCHHHHHHHHH
Q ss_conf 7878899999998
Q gi|254780567|r 228 MGITRSLAAEVLK 240 (246)
Q Consensus 228 r~ITi~lvk~vL~ 240 (246)
.+||...|+++|.
T Consensus 230 ~~i~~~~v~~~lG 242 (560)
T PRK06647 230 SDITLEQIRSKMG 242 (560)
T ss_pred CCCCHHHHHHHHC
T ss_conf 9778999999868
No 36
>PRK12377 putative replication protein; Provisional
Probab=99.33 E-value=7.3e-12 Score=92.88 Aligned_cols=144 Identities=14% Similarity=0.048 Sum_probs=95.1
Q ss_pred CCCCCC---CCCCCCEEECC-CHHHHHHH----HHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC-----CCHHHHH
Q ss_conf 888776---68845416536-18999999----98510167884999878777868899999986276-----2013567
Q gi|254780567|r 31 SFPRCL---GISRDDLLVHS-AIEQAVRL----IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS-----TRFSNIA 97 (246)
Q Consensus 31 ~~~~~~---~~~~dnFiv~~-~N~~A~~~----i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~-----~~~~~~~ 97 (246)
.=+++| .-+|+||-+.. --+.|+.. +.++..+ ...++++||+|+|||||+.|++.+.-. .++....
T Consensus 61 rs~i~~~h~~~~f~ny~~~~~~~~~a~~~a~~~~~~F~~~-~~NlIf~G~pGtGKTHLA~AIg~~a~~~G~sVlF~t~~d 139 (248)
T PRK12377 61 RSGIQPLHRKCSFANYQVQNDGQRYALSQAKSIADELMTG-CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPD 139 (248)
T ss_pred CCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC-CCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHH
T ss_conf 0468537643863456457878999999999999987318-860899899998788999999999998799699988999
Q ss_pred HH-----------H---HHHHHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH-HH
Q ss_conf 64-----------4---45466666653343321003761---0335455543112342156403543200223456-67
Q gi|254780567|r 98 KS-----------L---DSILIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LC 159 (246)
Q Consensus 98 ~~-----------~---~~~~~~~~~~i~iddi~~~~~~e---e~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~D-L~ 159 (246)
.. . ....+...+++++|++-....++ ..||++++..++..+++++||+.+..+|.-.+.| +.
T Consensus 140 Lv~~L~~a~~~g~~~~k~l~~l~~~dLLIIDElG~~~~s~~~~~llfqlI~~Ry~~~ks~IiTTNL~f~ew~~ilgdail 219 (248)
T PRK12377 140 VMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLNHEAMSTLLGERVM 219 (248)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHCCCEEEEHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 99999999984850999999973389898600057889867999999999999855798689758997799888759999
Q ss_pred HHH--HHCCEEEECCCCH
Q ss_conf 885--2122245078897
Q gi|254780567|r 160 SRL--KAATVVKISLPDD 175 (246)
Q Consensus 160 SRl--~~g~~~~I~~pdd 175 (246)
+|| ..+..+.+.-.+.
T Consensus 220 DRL~~h~~~~i~f~GeSY 237 (248)
T PRK12377 220 DRMTMNGGRWVNFNWESW 237 (248)
T ss_pred HHHHHCCCEEEEEECCCC
T ss_conf 999866934998617311
No 37
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.32 E-value=2e-10 Score=83.98 Aligned_cols=207 Identities=12% Similarity=0.103 Sum_probs=122.4
Q ss_pred CCCCCCCCEEECCCHHH--HHHHHHHHHCC-CCCEEEEECCCCCCHHHHHHHHHHHHCC-------CCHHHHHH------
Q ss_conf 76688454165361899--99999851016-7884999878777868899999986276-------20135676------
Q gi|254780567|r 35 CLGISRDDLLVHSAIEQ--AVRLIDSWPSW-PSRVVILVGPSGSGKSCLANIWSDKSRS-------TRFSNIAK------ 98 (246)
Q Consensus 35 ~~~~~~dnFiv~~~N~~--A~~~i~~~~~~-~~~~l~i~G~~GsGKTHLl~a~~~~~~~-------~~~~~~~~------ 98 (246)
.+.|--+.+. |-..+. ....+.....+ ..+.+||||++|+|||...+..+++... .++.+...
T Consensus 24 ~~~yvP~~l~-~Re~Ei~~l~~~l~~~l~g~~~~n~~I~G~pGTGKT~~vk~v~~~l~~~~~~~~~vyINc~~~~t~~~i 102 (394)
T PRK00411 24 EPDYVPENLP-HREEQIEELAFALRPALRGSRPSNVLILGPPGTGKTTTVKKVFEELEEAALKVVYVYINCQIDRTRYAI 102 (394)
T ss_pred CCCCCCCCCC-CHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH
T ss_conf 9988899898-859999999999999975999984799889999899999999999997468965999969668989999
Q ss_pred ------HHH------------HHH------HH---HHHHHHHHHHHCCCC-C-CHHHHHHHHHHH--C-CCCCEEEEECC
Q ss_conf ------444------------546------66---666533433210037-6-103354555431--1-23421564035
Q gi|254780567|r 99 ------SLD------------SIL------ID---TRKPVLLEDIDLLDF-N-DTQLFHIINSIH--Q-YDSSLLMTART 146 (246)
Q Consensus 99 ------~~~------------~~~------~~---~~~~i~iddi~~~~~-~-ee~lf~l~n~~~--~-~~~~iilts~~ 146 (246)
.+. ... +. ..-++++|+++.+-. . ++.|+.++..-. . ....++..|+.
T Consensus 103 ~~~i~~~L~~~~~p~~G~s~~~~~~~l~~~l~~~~~~~ivvLDEiD~L~~~~~~~vLY~L~r~~~~~~~~~~~vI~IsN~ 182 (394)
T PRK00411 103 LSEIARSLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLVEKEGNDVLYSLLRAHEEYPGARIGVIGISSD 182 (394)
T ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEEECC
T ss_conf 99999995699898778789999999999861669758999965540203665089999985402268873899999768
Q ss_pred CCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHC--CCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHH-
Q ss_conf 4320022345667885212224507889789999999986662--8979889999999406679899999999999999-
Q gi|254780567|r 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR--QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA- 223 (246)
Q Consensus 147 ~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r--~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~s- 223 (246)
..-.....|++.|||.- ..+..+|-+-+.+..||...+..- .=.+++++++|++....++.++++.+++.|-.+.
T Consensus 183 -~~~~~~Ldprv~S~l~~-~~i~F~PY~~~qL~~IL~~R~~~af~~gv~~~~~i~~~A~~~a~~~GDaR~Aldllr~A~e 260 (394)
T PRK00411 183 -LTFLYILDPRVKSVFGP-EEIVFPPYTADEIFDILKDRVEEGFYPGVVSDEVLELIADLTGREHGDARVAIDLLRRAGE 260 (394)
T ss_pred -CCHHHHHHHHHHCCCCC-EEEEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf -71776640777502786-2898589998999999999998414556789789999999985504758999999999999
Q ss_pred --HHH-CCCCCHHHHHHHHHHHHC
Q ss_conf --984-778788999999986741
Q gi|254780567|r 224 --LSR-GMGITRSLAAEVLKETQQ 244 (246)
Q Consensus 224 --l~~-kr~ITi~lvk~vL~~~~~ 244 (246)
-.. ..+||...|+++.++.+.
T Consensus 261 ~Ae~~g~~~Vt~~hV~~A~~~~~~ 284 (394)
T PRK00411 261 IAEREGSRKVTEEDVRKAYEKSEP 284 (394)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHC
T ss_conf 999718996589999999998600
No 38
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.31 E-value=6.5e-11 Score=87.06 Aligned_cols=198 Identities=15% Similarity=0.203 Sum_probs=123.2
Q ss_pred CCCCCCCCCCCCCCCEEECCCHHHHHHHHHHH-HCCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCHHH--------H-
Q ss_conf 15588877668845416536189999999851-016788-499987877786889999998627620135--------6-
Q gi|254780567|r 28 LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW-PSWPSR-VVILVGPSGSGKSCLANIWSDKSRSTRFSN--------I- 96 (246)
Q Consensus 28 l~l~~~~~~~~~~dnFiv~~~N~~A~~~i~~~-~~~~~~-~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~--------~- 96 (246)
++|--..+|. +|++- +|. ..++..+.+. ..+.-. ...++||.|+|||.+++++|+.-++..-.. .
T Consensus 6 ~~L~RKYRPk-~F~EV-IGQ--e~Vv~tL~nAI~~gRIaHAYLF~GPRGvGKTT~ARIfAKaLNC~~~~d~~~pC~~C~~ 81 (718)
T PRK07133 6 KALYRKYRPK-KFDEI-KGQ--DHIIETLKNIIKSGKISHAYLFSGPHGTGKTSVAKIFANALNCSHKTDLIEPCQNCIE 81 (718)
T ss_pred HHHHHHHCCC-CHHHH-CCC--HHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
T ss_conf 9899872899-75442-285--9999999999974997505862389986889999999999679999999997702143
Q ss_pred --HHHHHH------------------------HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCC-CEEEEECCCCC
Q ss_conf --764445------------------------466666653343321003761033545554311234-21564035432
Q gi|254780567|r 97 --AKSLDS------------------------ILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDS-SLLMTARTFPV 149 (246)
Q Consensus 97 --~~~~~~------------------------~~~~~~~~i~iddi~~~~~~ee~lf~l~n~~~~~~~-~iilts~~~p~ 149 (246)
....+. .....+++.++|.+|.+.. +++-.++-.+.+--. .+.+.++..|.
T Consensus 82 ~~~~s~DViEIDAASn~gVDdIReLie~v~y~P~~gkYKVyIIDEvHMLS~--~AfNALLKtLEEPP~hvvFILaTTep~ 159 (718)
T PRK07133 82 NFNNNLDIIEMDAASNNGVDEIRELRENVKNLPQISKYKIYIIDEVHMLSK--SAFNALLKTLEEPPKHVIFILATTDVQ 159 (718)
T ss_pred CCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCH--HHHHHHHHHHCCCCCCCEEEEEECCHH
T ss_conf 047898737754556688899999999825588778724999966200799--999999985027987827999708825
Q ss_pred CHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 00223456678852122245078897899999999866628979889999999406679899999999999999984778
Q gi|254780567|r 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229 (246)
Q Consensus 150 ~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~ 229 (246)
.+ .+-..||+. .+.+...+.+.+...|++.+...++.++++++..|+++.++++|++.++++++ +...+.+
T Consensus 160 KI---P~TIlSRCQ---rFdFkrI~~~~I~~~L~~I~~kE~I~~e~eAL~lIA~~a~GSmRDAlSlLDQv---~~f~ng~ 230 (718)
T PRK07133 160 KI---PLTILSRVQ---RFNFRRISEDVIVHQLENILEKEKIKYEKNALKLIASLASGSLRDALSIADQV---SIFGNGN 230 (718)
T ss_pred HC---CHHHHHCCE---EEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH---HHHCCCC
T ss_conf 48---487741220---33588899999999999999985997789999999997688488898799999---9854898
Q ss_pred CCHHHHHHHHH
Q ss_conf 78899999998
Q gi|254780567|r 230 ITRSLAAEVLK 240 (246)
Q Consensus 230 ITi~lvk~vL~ 240 (246)
||+.-|++++.
T Consensus 231 it~k~v~~~~G 241 (718)
T PRK07133 231 ITLKNVNELFG 241 (718)
T ss_pred CCHHHHHHHHC
T ss_conf 72999999967
No 39
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.31 E-value=1.4e-10 Score=84.98 Aligned_cols=188 Identities=14% Similarity=0.166 Sum_probs=123.5
Q ss_pred CCCCEEECCCHHHHHHHHHHHHC-CCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCHH-----------HHHH-------
Q ss_conf 84541653618999999985101-6788-49998787778688999999862762013-----------5676-------
Q gi|254780567|r 39 SRDDLLVHSAIEQAVRLIDSWPS-WPSR-VVILVGPSGSGKSCLANIWSDKSRSTRFS-----------NIAK------- 98 (246)
Q Consensus 39 ~~dnFiv~~~N~~A~~~i~~~~~-~~~~-~l~i~G~~GsGKTHLl~a~~~~~~~~~~~-----------~~~~------- 98 (246)
+|++.+ |. +.++..+.+... +... ...++||.|+|||.++.++++.-+..... +...
T Consensus 15 ~F~dvV-GQ--~~vv~~L~nai~~~ri~HAyLF~GprGtGKTT~ArilAkaLnC~~~~~~~~pCg~C~~C~~I~~g~~~D 91 (462)
T PRK06305 15 TFSEIL-GQ--DAVVTVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAICKEISSGTSLD 91 (462)
T ss_pred CHHHHC-CC--HHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCC
T ss_conf 876604-90--999999999998499762343038998599999999999967999988889887668889986389998
Q ss_pred ---------H-HHHH-----------HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCE-EEEECCCCCCHHHHHH
Q ss_conf ---------4-4454-----------6666665334332100376103354555431123421-5640354320022345
Q gi|254780567|r 99 ---------S-LDSI-----------LIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL-LMTARTFPVSWGVCLP 156 (246)
Q Consensus 99 ---------~-~~~~-----------~~~~~~~i~iddi~~~~~~ee~lf~l~n~~~~~~~~i-ilts~~~p~~~~~~l~ 156 (246)
. .+.. ....++++++|.+|.+.. +++--++..+.+-...+ .+.+...|..+ .+
T Consensus 92 ViEiDaAs~~gVddIRel~e~v~~~P~~~~yKVyIIDEvhmLs~--~AfNALLKtLEEPP~~v~FILaTTe~~KI---p~ 166 (462)
T PRK06305 92 VIEIDGASHRGIEDIRQINETVLFTPSKSQYKIYIIDEVHMLTK--EAFNSLLKTLEEPPQHVKFFLATTEIHKI---PG 166 (462)
T ss_pred EEEECCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECHHHCCH--HHHHHHHHHHHCCCCCEEEEEEECCHHHC---CH
T ss_conf 68643553446689999997710088677505999815211799--99999999861898774999981881428---54
Q ss_pred HHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 66788521222450788978999999998666289798899999994066798999999999999999847787889999
Q gi|254780567|r 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236 (246)
Q Consensus 157 DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~ITi~lvk 236 (246)
-..||+. .+.+.+++.+.+..-|.+.+...++.++++.++.|++..+.++|++.++++++- ++ .+..||...|.
T Consensus 167 TIlSRCQ---rf~F~~i~~~~I~~~L~~I~~~E~i~~e~~AL~lIA~~a~GsmRDAlslLDQ~i--~~-~~~~it~~~V~ 240 (462)
T PRK06305 167 TILSRCQ---KMHLKRIPEETIIDKLALIAQQDGIETSREALLPIARAAQGSLRDAESLYDYVV--GL-FPKSLSPDTVA 240 (462)
T ss_pred HHHHHHH---EEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH--HH-CCCCCCHHHHH
T ss_conf 7876540---233257999999999999999839985999999999985895878999999999--84-79986899999
Q ss_pred HHHH
Q ss_conf 9998
Q gi|254780567|r 237 EVLK 240 (246)
Q Consensus 237 ~vL~ 240 (246)
++|.
T Consensus 241 ~~lG 244 (462)
T PRK06305 241 KALG 244 (462)
T ss_pred HHHC
T ss_conf 9868
No 40
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.31 E-value=1.4e-10 Score=85.03 Aligned_cols=200 Identities=15% Similarity=0.120 Sum_probs=128.1
Q ss_pred CCCCCCCCCCCCCCEEECCCHHHHHHHHHH-HHCCCC-CEEEEECCCCCCHHHHHHHHHHHHCCCCHH------------
Q ss_conf 558887766884541653618999999985-101678-849998787778688999999862762013------------
Q gi|254780567|r 29 FFSFPRCLGISRDDLLVHSAIEQAVRLIDS-WPSWPS-RVVILVGPSGSGKSCLANIWSDKSRSTRFS------------ 94 (246)
Q Consensus 29 ~l~~~~~~~~~~dnFiv~~~N~~A~~~i~~-~~~~~~-~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~------------ 94 (246)
++.....|. +|++.+ |. ...+..+.+ ...+.- +...++||.|+|||..++++|+.-+.....
T Consensus 10 ~la~KyRP~-~f~~li-GQ--~~~~~~l~n~i~~~~~~~aylf~G~rG~GKTt~Ari~ak~lnc~~~~~~~~~~~~c~~c 85 (507)
T PRK06645 10 PFARKYRPS-NFAELQ-GQ--EVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEKC 85 (507)
T ss_pred EEEECCCCC-CHHHHC-CC--HHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 643200799-765623-93--99999999999739966347745879978899999999996799988889988888887
Q ss_pred --HHHHHH-----------------H--HH---------HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCE-EEE
Q ss_conf --567644-----------------4--54---------6666665334332100376103354555431123421-564
Q gi|254780567|r 95 --NIAKSL-----------------D--SI---------LIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL-LMT 143 (246)
Q Consensus 95 --~~~~~~-----------------~--~~---------~~~~~~~i~iddi~~~~~~ee~lf~l~n~~~~~~~~i-ilt 143 (246)
+..... + .. ....+++.++|.+|.+.. +++-.++-.+.+-...+ .+.
T Consensus 86 ~~c~~i~~~~~~dv~EiDaas~~gv~~ir~l~~~~~~~p~~~~~kv~iidE~hmls~--~a~nallktlEepp~~~~Fi~ 163 (507)
T PRK06645 86 TNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK--GAFNALLKTLEEPPPHIIFIF 163 (507)
T ss_pred HHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCHHHCCH--HHHHHHHHHHHCCCCCEEEEE
T ss_conf 678998658999859963788888899999986355178767435899521422489--999999997427864438999
Q ss_pred ECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 03543200223456678852122245078897899999999866628979889999999406679899999999999999
Q gi|254780567|r 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 (246)
Q Consensus 144 s~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~s 223 (246)
++..|..+. +-..||+. .+.+.+.+.+.+...|.+.+...++.++++++..|++..+.|+|++.+++++--.++
T Consensus 164 atte~~kip---~ti~srcq---~f~~~~i~~~~i~~~l~~i~~~E~~~~~~~al~~ia~~a~Gs~RDalslldqai~~~ 237 (507)
T PRK06645 164 ATTEVQKIP---ATIISRCQ---RYDLRRLSFEEIFKLLEYITKQENLKADIEALRIIAYKSEGSARDAVSILDQAASMS 237 (507)
T ss_pred ECCCHHHCC---HHHHHHCE---EEEEECCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 748536483---78885432---787545997999999999999768777789999999855998678999999999975
Q ss_pred HHHCCCCCHHHHHHHHH
Q ss_conf 98477878899999998
Q gi|254780567|r 224 LSRGMGITRSLAAEVLK 240 (246)
Q Consensus 224 l~~kr~ITi~lvk~vL~ 240 (246)
...+..|+...|+++|.
T Consensus 238 ~~~~~~I~~~~V~~MLG 254 (507)
T PRK06645 238 AKSDNIISPQVINQMLG 254 (507)
T ss_pred CCCCCCCCHHHHHHHHC
T ss_conf 48987026999999838
No 41
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.28 E-value=1.7e-10 Score=84.53 Aligned_cols=189 Identities=16% Similarity=0.174 Sum_probs=120.2
Q ss_pred CCCCEEECCCHHHHHHHHHHHH-CCC-CCEEEEECCCCCCHHHHHHHHHHHHCCCCH----------HHHHH--------
Q ss_conf 8454165361899999998510-167-884999878777868899999986276201----------35676--------
Q gi|254780567|r 39 SRDDLLVHSAIEQAVRLIDSWP-SWP-SRVVILVGPSGSGKSCLANIWSDKSRSTRF----------SNIAK-------- 98 (246)
Q Consensus 39 ~~dnFiv~~~N~~A~~~i~~~~-~~~-~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~----------~~~~~-------- 98 (246)
+|++.+ |. ..++..+.+.. .+. .....++||.|+|||.+++++++.-....- .+...
T Consensus 12 ~F~evI-GQ--e~iv~~L~nAi~~~Rl~HAYLFsGPrGvGKTt~ArifAkaLnC~~~~~~~PCg~C~sC~~i~~g~hpDV 88 (523)
T PRK08451 12 HFDELI-GQ--ESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFSRALVCEQGPSSTPCGTCAQCQAALEGRHIDI 88 (523)
T ss_pred CHHHCC-CC--HHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCE
T ss_conf 654404-94--999999999998599671587578998688999999999975999999898887888999864899985
Q ss_pred -------H--HH--HH---------HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCC-CEEEEECCCCCCHHHHHHH
Q ss_conf -------4--44--54---------66666653343321003761033545554311234-2156403543200223456
Q gi|254780567|r 99 -------S--LD--SI---------LIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPD 157 (246)
Q Consensus 99 -------~--~~--~~---------~~~~~~~i~iddi~~~~~~ee~lf~l~n~~~~~~~-~iilts~~~p~~~~~~l~D 157 (246)
. .+ .. ....++++++|++|.+.. ++.-.++-.+.+-.. .+.+..+..|..+ ++-
T Consensus 89 iEiDaasn~gID~IReLie~~~~~P~~gryKV~IIDEah~Lt~--~A~NALLKTLEEPP~~vvFILaTTep~KL---p~T 163 (523)
T PRK08451 89 IEMDAASNRGIDDIRNLIEQTKYKPSMARFKIFIIDEVHMLTK--EAFNALLKTLEEPPSYVKFILATTDPLKL---PAT 163 (523)
T ss_pred EEECCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCH--HHHHHHHHHCCCCCCCCEEEEECCCHHHC---HHH
T ss_conf 5105533368999999999723588679727999826030489--99999999703898783799975994768---488
Q ss_pred HHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 67885212224507889789999999986662897988999999940667989999999999999998477878899999
Q gi|254780567|r 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237 (246)
Q Consensus 158 L~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~ITi~lvk~ 237 (246)
..||+. .+...+++.+....-|.+.+...++.+++++++.|+++.+.|+|++.+++++. ....+..||..-|.+
T Consensus 164 IlSRCQ---~f~Fk~I~~~~I~~~L~~I~~~E~i~~e~~AL~~IA~~a~GslRDalslLdQ~---i~~~~~~i~~~~v~~ 237 (523)
T PRK08451 164 ILSRTQ---HFRFKQIPQNSIISHLKTILNKEGVSYEPEALEILARSGSGSLRDTLTLLDQA---IIFCKNAITESKVAD 237 (523)
T ss_pred HHHHHH---CCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH---HHHCCCCCCHHHHHH
T ss_conf 874203---11033799999999999999983998799999999997789486898799999---984799877999999
Q ss_pred HHHH
Q ss_conf 9986
Q gi|254780567|r 238 VLKE 241 (246)
Q Consensus 238 vL~~ 241 (246)
+|.-
T Consensus 238 ~lG~ 241 (523)
T PRK08451 238 MLGL 241 (523)
T ss_pred HHCC
T ss_conf 8588
No 42
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.28 E-value=2e-09 Score=77.93 Aligned_cols=206 Identities=14% Similarity=0.099 Sum_probs=135.0
Q ss_pred CCCCCCCEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC-----CHHHHHHH---H-------
Q ss_conf 66884541653618999999985101678849998787778688999999862762-----01356764---4-------
Q gi|254780567|r 36 LGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKS---L------- 100 (246)
Q Consensus 36 ~~~~~dnFiv~~~N~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~-----~~~~~~~~---~------- 100 (246)
...+-+.||-++.-+.|+..+.........+.++.|++|+|||.|++.+.+..... ++...... +
T Consensus 15 ~~pd~~~~y~s~~h~~al~~L~~~l~~~~g~~lltGe~GtGKTtllr~l~~~l~~~~~~~~~i~~~~l~~~~ll~~i~~~ 94 (269)
T TIGR03015 15 LLPDPDFFYPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAAD 94 (269)
T ss_pred CCCCHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99984541478669999999999996489659997299898899999999845934548999769999999999999998
Q ss_pred ---H------HH---HHH----------HHHHHHHHHHHCCCCC-CHHHHHHHHHHHCCCC--CEEEEECCCCCCHH--H
Q ss_conf ---4------54---666----------6665334332100376-1033545554311234--21564035432002--2
Q gi|254780567|r 101 ---D------SI---LID----------TRKPVLLEDIDLLDFN-DTQLFHIINSIHQYDS--SLLMTARTFPVSWG--V 153 (246)
Q Consensus 101 ---~------~~---~~~----------~~~~i~iddi~~~~~~-ee~lf~l~n~~~~~~~--~iilts~~~p~~~~--~ 153 (246)
. .. .+. ..-++++|+.|.+..+ -+.|=.+.|.-....+ ++++.+...-.+.- .
T Consensus 95 lg~~~~~~~~~~~~~~l~~~L~~~~~~g~~~vliIDEAq~L~~~~Le~Lr~L~n~e~~~~~ll~iiL~GqpeL~~~L~~~ 174 (269)
T TIGR03015 95 FGLETEGRDKAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSP 174 (269)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHCCHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHCCC
T ss_conf 59898898999999999999999996699469997242219999999999997013588870489995786799987274
Q ss_pred HHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCC----CCCHHHHHHHHHCCCCCHHHHHHHHHH-HHHHHHHHCC
Q ss_conf 34566788521222450788978999999998666289----798899999994066798999999999-9999998477
Q gi|254780567|r 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI----FIDKKLAAYIVQRMERSLVFAEKLVDK-MDNLALSRGM 228 (246)
Q Consensus 154 ~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i----~l~~~v~~yl~~r~~Rs~~~l~~~l~~-Ld~~sl~~kr 228 (246)
.++.|..|. ...+.++|.+.+.....+.+....-|. .+++++++-|.+.....++.|..+-+. |-......++
T Consensus 175 ~~~~l~qRI--~~~~~L~pl~~eet~~YI~~RL~~AG~~~~~~Ft~~A~~~I~~~S~G~PR~IN~Lc~~aLl~a~~~~~~ 252 (269)
T TIGR03015 175 QLQQLRQRI--IASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLLLSAFLEEKR 252 (269)
T ss_pred CHHHHHHCE--EEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 025455507--679984799989999999999986699999985999999999986990089999999999999994888
Q ss_pred CCCHHHHHHHHHHHH
Q ss_conf 878899999998674
Q gi|254780567|r 229 GITRSLAAEVLKETQ 243 (246)
Q Consensus 229 ~ITi~lvk~vL~~~~ 243 (246)
.|+-..|++++.|++
T Consensus 253 ~I~~~~v~~~~~el~ 267 (269)
T TIGR03015 253 EIGGEEVREVIAEID 267 (269)
T ss_pred CCCHHHHHHHHHHHC
T ss_conf 679999999999762
No 43
>PRK06674 DNA polymerase III subunits gamma and tau; Validated
Probab=99.26 E-value=3.9e-10 Score=82.23 Aligned_cols=188 Identities=12% Similarity=0.185 Sum_probs=123.8
Q ss_pred CCCCEEECCCHHHHHHHHHHHH-CCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCHH----------HHHHH-------
Q ss_conf 8454165361899999998510-16788-49998787778688999999862762013----------56764-------
Q gi|254780567|r 39 SRDDLLVHSAIEQAVRLIDSWP-SWPSR-VVILVGPSGSGKSCLANIWSDKSRSTRFS----------NIAKS------- 99 (246)
Q Consensus 39 ~~dnFiv~~~N~~A~~~i~~~~-~~~~~-~l~i~G~~GsGKTHLl~a~~~~~~~~~~~----------~~~~~------- 99 (246)
+|++.+ |. +.+...+.+.. .+.-. ...++||.|+|||.++.++++.-+..... +....
T Consensus 14 ~F~dvv-GQ--~~v~~~L~nai~~~ri~HAyLF~GprGtGKts~Ari~AkaLnC~~~~~~~pC~~C~~C~~i~~g~~~Dv 90 (563)
T PRK06674 14 KFEDVV-GQ--EHVTKTLQNALLQEKVSHAYLFSGPRGTGKTSIAKVFAKAVNCEHAPVAEPCNECPSCLGITNGSISDV 90 (563)
T ss_pred CHHHHC-CH--HHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCE
T ss_conf 765524-80--999999999998499650343128998689999999999857999999887766878999855899877
Q ss_pred --H------HHH-------------HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCC-EEEEECCCCCCHHHHHHH
Q ss_conf --4------454-------------666666533433210037610335455543112342-156403543200223456
Q gi|254780567|r 100 --L------DSI-------------LIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPD 157 (246)
Q Consensus 100 --~------~~~-------------~~~~~~~i~iddi~~~~~~ee~lf~l~n~~~~~~~~-iilts~~~p~~~~~~l~D 157 (246)
. ..+ ....++++++|.+|.+. .++...++-.+.+-... +.+..+..|.. .++-
T Consensus 91 iEiDaasn~gVd~IR~i~~~v~~~P~~~~yKV~IIDeah~Lt--~~A~NALLKtLEEPP~~viFILaTtep~k---i~~T 165 (563)
T PRK06674 91 LEIDAASNNGVDEIRDIRDKVKFAPSAVEYKVYIIDEVHMLS--IGAFNALLKTLEEPPGHVIFILATTEPHK---IPPT 165 (563)
T ss_pred EEECCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECHHHCC--HHHHHHHHHHHHCCCCCEEEEEECCCHHH---CCHH
T ss_conf 985255557879999999982648867873799985456379--99999999986388756499996599475---8478
Q ss_pred HHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 67885212224507889789999999986662897988999999940667989999999999999998477878899999
Q gi|254780567|r 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237 (246)
Q Consensus 158 L~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~ITi~lvk~ 237 (246)
.+||+. .+.+...+.+.+..-|.+.+...|+.++++++.+|++..+.++|++.++++++- |. .+..||...|.+
T Consensus 166 I~SRCQ---rf~F~ri~~~~i~~rL~~I~~~E~i~~~~~aL~~Ia~~a~GsmRDAlsiLdQ~~--s~-~~~~i~~~~v~~ 239 (563)
T PRK06674 166 IISRCQ---RFDFRRISVNDIVERLSTVVTNEGTQVEDEALQIIARAADGGMRDALSLLDQAI--SF-SDERVTTEDVLA 239 (563)
T ss_pred HHHHHE---EEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH--HH-CCCCCCHHHHHH
T ss_conf 873310---312788999999999999999849998788999999976997889999999999--71-599768999999
Q ss_pred HHH
Q ss_conf 998
Q gi|254780567|r 238 VLK 240 (246)
Q Consensus 238 vL~ 240 (246)
+|.
T Consensus 240 ~lG 242 (563)
T PRK06674 240 VTG 242 (563)
T ss_pred HHC
T ss_conf 868
No 44
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.25 E-value=1.9e-10 Score=84.22 Aligned_cols=200 Identities=18% Similarity=0.310 Sum_probs=132.2
Q ss_pred CCCCCCCCEEECCCH-HHHHHHH----H---HHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH----
Q ss_conf 766884541653618-9999999----8---510167884999878777868899999986276201356764445----
Q gi|254780567|r 35 CLGISRDDLLVHSAI-EQAVRLI----D---SWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS---- 102 (246)
Q Consensus 35 ~~~~~~dnFiv~~~N-~~A~~~i----~---~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~---- 102 (246)
.+..++||-+ |..- +-.+.+| + .+.+|.-+.+.+|||+|.||||++.+++++.+.-++...+..+.-
T Consensus 115 ~~~it~ddVi-GqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVG 193 (368)
T COG1223 115 ISDITLDDVI-GQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVG 193 (368)
T ss_pred HCCCCHHHHH-CHHHHHHHHHHHHHHHHCHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEECHHHHHHHHHH
T ss_conf 1366176641-639888887999999649687634575416877899964879999872545785487116888887743
Q ss_pred ------------HHHHHHHHHHHHHHHCCCCC---C----------HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf ------------46666665334332100376---1----------0335455543112342156403543200223456
Q gi|254780567|r 103 ------------ILIDTRKPVLLEDIDLLDFN---D----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 (246)
Q Consensus 103 ------------~~~~~~~~i~iddi~~~~~~---e----------e~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~D 157 (246)
....+..++.+|.++.+.-+ | .+|+--++.+.++.+-+.++++..|.-+ .+-
T Consensus 194 dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~L---D~a 270 (368)
T COG1223 194 DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELL---DPA 270 (368)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHC---CHH
T ss_conf 59899999999887519849984002455530457886454999999999850174457756999505984650---788
Q ss_pred HHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCC-CCHHHHH-HHHHH-HHHHHHHHCCCCCHHH
Q ss_conf 6788521222450788978999999998666289798899999994066-7989999-99999-9999998477878899
Q gi|254780567|r 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME-RSLVFAE-KLVDK-MDNLALSRGMGITRSL 234 (246)
Q Consensus 158 L~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~-Rs~~~l~-~~l~~-Ld~~sl~~kr~ITi~l 234 (246)
.+|||.- -++...|+++++..|+..++...-+.++-. .+|++.+.. -|-+++. .++.+ |.++-.....+|+..-
T Consensus 271 iRsRFEe--EIEF~LP~~eEr~~ile~y~k~~Plpv~~~-~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~v~~ed 347 (368)
T COG1223 271 IRSRFEE--EIEFKLPNDEERLEILEYYAKKFPLPVDAD-LRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDREKVERED 347 (368)
T ss_pred HHHHHHH--EEEEECCCHHHHHHHHHHHHHHCCCCCCCC-HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_conf 8865565--065648885899999999898589765568-9999998478772068999999999999871344433889
Q ss_pred HHHHHHH
Q ss_conf 9999986
Q gi|254780567|r 235 AAEVLKE 241 (246)
Q Consensus 235 vk~vL~~ 241 (246)
+..+|++
T Consensus 348 ie~al~k 354 (368)
T COG1223 348 IEKALKK 354 (368)
T ss_pred HHHHHHH
T ss_conf 9999986
No 45
>pfam01695 IstB IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Probab=99.25 E-value=3.9e-12 Score=94.60 Aligned_cols=120 Identities=18% Similarity=0.264 Sum_probs=75.9
Q ss_pred CCCCCCCEEECCCH---HHHHHHHH--HHHCCCCCEEEEECCCCCCHHHHHHHHHHHHC-----CCCHHHHHHH------
Q ss_conf 66884541653618---99999998--51016788499987877786889999998627-----6201356764------
Q gi|254780567|r 36 LGISRDDLLVHSAI---EQAVRLID--SWPSWPSRVVILVGPSGSGKSCLANIWSDKSR-----STRFSNIAKS------ 99 (246)
Q Consensus 36 ~~~~~dnFiv~~~N---~~A~~~i~--~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~-----~~~~~~~~~~------ 99 (246)
...++|+|-....- +..+.-+. .|.+ ....++++||+|+|||||+.+++++.- ..|+......
T Consensus 15 ~~~tle~~d~~~~~~~~~~~i~~L~~~~~i~-~~~Nlll~G~~GtGKThLA~Ai~~~~~~~g~~v~f~~~~~L~~~l~~~ 93 (178)
T pfam01695 15 ARKTLEDFDFRAARGLDRRLIAELAGLDWIE-QAENLLLLGPPGVGKTHLACALGHQACRAGYSVLFTRTPDLVEQLKRA 93 (178)
T ss_pred CCCCHHHCCCCCCCCCCHHHHHHHHCCCCHH-CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHH
T ss_conf 9998633688789998999999885597421-587689989999878999999999999869859999616799999987
Q ss_pred -------HHHHHHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf -------44546666665334332100376---10335455543112342156403543200223456
Q gi|254780567|r 100 -------LDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 (246)
Q Consensus 100 -------~~~~~~~~~~~i~iddi~~~~~~---ee~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~D 157 (246)
.........+.+++||+-....+ .+.||++++..++ .+++++||+.+|++|.-.++|
T Consensus 94 ~~~~~~~~~l~~~~~~dlLIiDDlG~~~~s~~~~~~lf~li~~Rye-~~stIiTSN~~~~~W~~~~~d 160 (178)
T pfam01695 94 RGDGRLARTLQRLAKADLLILDDIGYLPLSQEAAHLLFELISDRYE-RRSTILTSNLPFGEWHEVFGD 160 (178)
T ss_pred HHCCCHHHHHHHHHCCCEEEEEHHCCCCCCHHHHHHHHHHHHHHHC-CCCEEEECCCCHHHHHHHCCC
T ss_conf 5267499999996258978872001656898999999999999975-688687768997899876487
No 46
>CHL00176 ftsH cell division protein; Validated
Probab=99.25 E-value=2.9e-10 Score=83.05 Aligned_cols=202 Identities=22% Similarity=0.244 Sum_probs=130.8
Q ss_pred CCCCCCCCCEEECCCH-----HHHHHHHHHHHC------CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 7766884541653618-----999999985101------67884999878777868899999986276201356764445
Q gi|254780567|r 34 RCLGISRDDLLVHSAI-----EQAVRLIDSWPS------WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 (246)
Q Consensus 34 ~~~~~~~dnFiv~~~N-----~~A~~~i~~~~~------~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~ 102 (246)
-.++-+|+|.- |-.. ++.+++++++.+ .+-+.+.|+||||+|||.|++|++.+++.-+++.....+..
T Consensus 170 ~~~~vtF~DVa-G~~eaK~el~EivdfLk~P~k~~~~Gak~PkGvLL~GpPGTGKTlLAkAvAgEa~vpF~~~sgs~F~e 248 (631)
T CHL00176 170 AKTGITFNDVA-GVEEAKEELEEVVTFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVE 248 (631)
T ss_pred CCCCCCCCCCC-CCHHHHHHHHHHHHHHCCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEHHHHHH
T ss_conf 89997753228-85899999999999835958876449968965898898998788999998565588469988378556
Q ss_pred H----------------HHHHHHHHHHHHHHCCCC---------CC---H---HHHHHHHHHHCCCCCEEEEECCCCCCH
Q ss_conf 4----------------666666533433210037---------61---0---335455543112342156403543200
Q gi|254780567|r 103 I----------------LIDTRKPVLLEDIDLLDF---------ND---T---QLFHIINSIHQYDSSLLMTARTFPVSW 151 (246)
Q Consensus 103 ~----------------~~~~~~~i~iddi~~~~~---------~e---e---~lf~l~n~~~~~~~~iilts~~~p~~~ 151 (246)
. ...+..++.||.++.+.. .+ + +|+--.+-+..+.+-++++++..|..+
T Consensus 249 ~~vGvga~rVR~LF~~Ar~~aP~IiFIDEiDaig~~Rg~~~~gg~~e~e~tlnqLL~emDGf~~~~gViViaATNrpd~L 328 (631)
T CHL00176 249 MFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGVGGGNDEREQTLNQLLTEMDGFEGNKGVIVIAATNRIDIL 328 (631)
T ss_pred HHCCHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC
T ss_conf 42155589999999999863996999871012011478988898508999999999984288878886999825885545
Q ss_pred HHHHHHHHH-HHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHH-HHHHHHCCC-CCHHHHHHHHHHHHHHHHHH-C
Q ss_conf 223456678-8521222450788978999999998666289798899-999994066-79899999999999999984-7
Q gi|254780567|r 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRME-RSLVFAEKLVDKMDNLALSR-G 227 (246)
Q Consensus 152 ~~~l~DL~S-Rl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v-~~yl~~r~~-Rs~~~l~~~l~~Ld~~sl~~-k 227 (246)
+-.+ ||+ ||- -.+.|+.||.+.|..||+.++... .+.++| ++.|+++.+ -|-.+|.++++.-.-.+... +
T Consensus 329 DpAL--lRPGRFD--R~I~V~lPD~~gR~~IL~vh~k~~--~l~~dvdl~~iA~~T~GfSGAdLanlvNEAal~AaR~~~ 402 (631)
T CHL00176 329 DAAL--LRPGRFD--RQVTVSLPDFEGRLDILKVHARNK--KLAEDVSLELIARRTPGFSGADLANLLNEAAILAARRRK 402 (631)
T ss_pred CHHH--CCCCCCC--EEEEECCCCHHHHHHHHHHHHHCC--CCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 6866--2688775--499826989899999999997078--666530099998626998678887699999999998477
Q ss_pred CCCCHHHHHHHHHHH
Q ss_conf 787889999999867
Q gi|254780567|r 228 MGITRSLAAEVLKET 242 (246)
Q Consensus 228 r~ITi~lvk~vL~~~ 242 (246)
+.||..-+.+++...
T Consensus 403 ~~it~~d~~~AidrV 417 (631)
T CHL00176 403 NQITMSEIDEAIDRV 417 (631)
T ss_pred CCCCHHHHHHHHHHH
T ss_conf 764788999999999
No 47
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.20 E-value=1.5e-09 Score=78.58 Aligned_cols=190 Identities=14% Similarity=0.165 Sum_probs=119.8
Q ss_pred CCCCEEECCCHHHHHHHHHH-HHCCCCCEEEEE-CCCCCCHHHHHHHHHHHHCCCCH----------HHHHH--------
Q ss_conf 84541653618999999985-101678849998-78777868899999986276201----------35676--------
Q gi|254780567|r 39 SRDDLLVHSAIEQAVRLIDS-WPSWPSRVVILV-GPSGSGKSCLANIWSDKSRSTRF----------SNIAK-------- 98 (246)
Q Consensus 39 ~~dnFiv~~~N~~A~~~i~~-~~~~~~~~l~i~-G~~GsGKTHLl~a~~~~~~~~~~----------~~~~~-------- 98 (246)
+|++. ||.. ..+..+.+ +..+.-...||| |+.|+|||.+++++++.-++..- .+..+
T Consensus 14 ~f~e~-vGQ~--~v~~~l~nal~~~rl~haylf~G~rGvGKTt~aRi~Ak~lnC~~~~~~~pcg~C~~C~~i~~g~~~d~ 90 (816)
T PRK07003 14 DFASL-VGQE--HVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDY 90 (816)
T ss_pred CHHHH-CCCH--HHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCE
T ss_conf 57662-3849--99999999997098631475117898888899999999867899999897877555787755887754
Q ss_pred -------HH----HHH---------HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCC-CEEEEECCCCCCHHHHHHH
Q ss_conf -------44----454---------66666653343321003761033545554311234-2156403543200223456
Q gi|254780567|r 99 -------SL----DSI---------LIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPD 157 (246)
Q Consensus 99 -------~~----~~~---------~~~~~~~i~iddi~~~~~~ee~lf~l~n~~~~~~~-~iilts~~~p~~~~~~l~D 157 (246)
.. ... ....+++++||.+|.+.. ..+--++..+.+--. -+.+.++..|.++.. -
T Consensus 91 iEiDaAS~~~vd~~r~l~~~~~y~p~~~r~KvyiiDEvHmls~--~afnalLKtlEepP~hv~FilaTTd~~k~p~---t 165 (816)
T PRK07003 91 VEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN--HAFNAMLKTLEEPPPHVKFILATTDPQKIPV---T 165 (816)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHCCH--HHHHHHHHHHCCCCCCEEEEEECCCHHHCCH---H
T ss_conf 7863554357689999998622478667447999841543399--9999999840379866489995588011528---8
Q ss_pred HHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 67885212224507889789999999986662897988999999940667989999999999999998477878899999
Q gi|254780567|r 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237 (246)
Q Consensus 158 L~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~ITi~lvk~ 237 (246)
..| .|+.+.++..+.+.+..-|.+.+...+|.++++.+..|++.-..|+|+..++++.. .++ .+-+||..-|++
T Consensus 166 ilS---Rc~~f~l~~~~~~~i~~~l~~i~~~E~i~~e~~al~lia~~a~GsmRDalsl~dQa--ia~-~~g~~~~~~v~~ 239 (816)
T PRK07003 166 VLS---RCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQA--IAY-SANEVTETAVSG 239 (816)
T ss_pred HHH---HHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH--HHH-CCCCCCHHHHHH
T ss_conf 987---77652236799999999999999982997799999999997677378888599999--984-699737999999
Q ss_pred HHHHH
Q ss_conf 99867
Q gi|254780567|r 238 VLKET 242 (246)
Q Consensus 238 vL~~~ 242 (246)
+|.-.
T Consensus 240 mLG~~ 244 (816)
T PRK07003 240 MLGAL 244 (816)
T ss_pred HHCCC
T ss_conf 85888
No 48
>PRK09183 transposase/IS protein; Provisional
Probab=99.18 E-value=2.2e-11 Score=89.91 Aligned_cols=140 Identities=19% Similarity=0.265 Sum_probs=85.9
Q ss_pred CCCCCEEECCCHHHHHHHHHHHH--CC--CCCEEEEECCCCCCHHHHHHHHHHHHC-----CCCHHHHHHHH--------
Q ss_conf 88454165361899999998510--16--788499987877786889999998627-----62013567644--------
Q gi|254780567|r 38 ISRDDLLVHSAIEQAVRLIDSWP--SW--PSRVVILVGPSGSGKSCLANIWSDKSR-----STRFSNIAKSL-------- 100 (246)
Q Consensus 38 ~~~dnFiv~~~N~~A~~~i~~~~--~~--~~~~l~i~G~~GsGKTHLl~a~~~~~~-----~~~~~~~~~~~-------- 100 (246)
.++|+|=.+..-...-..+..+. +| ....++|.||+|+|||||+.+++.+.. ..|+.......
T Consensus 71 ktle~fDf~~~~~l~~~~i~~La~~~fi~~~~Nvil~G~~GtGKThLA~Alg~~A~~~G~~v~f~~~~~L~~~L~~a~~~ 150 (258)
T PRK09183 71 KTFEEYDFTFATGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQ 150 (258)
T ss_pred CCHHHCCCCCCCCCCHHHHHHHHCCCHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHC
T ss_conf 77755565468862389999882581665588679989999868999999999999879939997899999999999876
Q ss_pred ---HH---HHHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHH---HHHH----HHH-H
Q ss_conf ---45---466666653343321003761---03354555431123421564035432002234---5667----885-2
Q gi|254780567|r 101 ---DS---ILIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL---PDLC----SRL-K 163 (246)
Q Consensus 101 ---~~---~~~~~~~~i~iddi~~~~~~e---e~lf~l~n~~~~~~~~iilts~~~p~~~~~~l---~DL~----SRl-~ 163 (246)
.. ......+.+++||+-..+.+. +.||.+++..++. +.+|+||..++++|...+ +-+. .|+ .
T Consensus 151 ~~~~~~l~r~l~~~dLLIiDdlG~~~~~~~~~~~lfeli~~Rye~-~S~IiTSn~~~~~W~~~f~~D~~la~AilDRL~H 229 (258)
T PRK09183 151 GRYKTTLQRGVMAPRLLIIDEIGYLPFSQEEANLFFQVIAKRYEK-GAMILTSNLPFGQWDQTFAGDAALTSAMLDRLLH 229 (258)
T ss_pred CCHHHHHHHHHCCCCEEEEHHHHCCCCCHHHHHHHHHHHHHHHCC-CCEEEECCCCHHHHHHHCCCCHHHHHHHHHHHCC
T ss_conf 859999998743465144313315468888999999999998576-7789988999789856516869999999998604
Q ss_pred HCCEEEECCCCHHHH
Q ss_conf 122245078897899
Q gi|254780567|r 164 AATVVKISLPDDDFL 178 (246)
Q Consensus 164 ~g~~~~I~~pdde~~ 178 (246)
-+.++.++-.+.-.+
T Consensus 230 ~a~~i~l~GeSyR~k 244 (258)
T PRK09183 230 HSHVVQIKGESYRLK 244 (258)
T ss_pred CEEEEEECCCCCCHH
T ss_conf 617997458772376
No 49
>PRK08181 transposase; Validated
Probab=99.17 E-value=2e-11 Score=90.25 Aligned_cols=124 Identities=23% Similarity=0.314 Sum_probs=85.1
Q ss_pred HHHCCCCCEEEEECCCCCCHHHHHHHHHHHH-----CCCCHHHHHHHH-------------HHHHHHHHHHHHHHHHHCC
Q ss_conf 5101678849998787778688999999862-----762013567644-------------4546666665334332100
Q gi|254780567|r 58 SWPSWPSRVVILVGPSGSGKSCLANIWSDKS-----RSTRFSNIAKSL-------------DSILIDTRKPVLLEDIDLL 119 (246)
Q Consensus 58 ~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~-----~~~~~~~~~~~~-------------~~~~~~~~~~i~iddi~~~ 119 (246)
.|.+. ...++|.||+|+|||||+.+++.+. +..|+....... ....+...+.+++||+-..
T Consensus 101 ~fi~~-~~Nvil~Gp~GtGKThLA~Alg~~A~~~G~~V~f~~~~~L~~~L~~a~~~~~~~~~~~~l~~~dLLIiDe~G~~ 179 (269)
T PRK08181 101 SWLAK-GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYV 179 (269)
T ss_pred HHHHC-CCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEEHHCCCC
T ss_conf 58864-87089989999878899999999999879939997899999999997755839999999744460122010566
Q ss_pred CCCCH---HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH------HHHHH-HHCCEEEECCCCHHHHHHHHH
Q ss_conf 37610---335455543112342156403543200223456------67885-212224507889789999999
Q gi|254780567|r 120 DFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD------LCSRL-KAATVVKISLPDDDFLEKVIV 183 (246)
Q Consensus 120 ~~~ee---~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~D------L~SRl-~~g~~~~I~~pdde~~~~il~ 183 (246)
+.+.+ .||.+++..++ .+.+|+||..++++|.-.++| +..|+ ..+.++.+.-++.-.+.+.-+
T Consensus 180 ~~~~~~~~~lf~lI~~Rye-~~S~IITSn~~~~~W~~~f~D~~la~AiLDRLvH~a~~i~l~GeSyR~k~a~~~ 252 (269)
T PRK08181 180 TKDQAETSVLFELISARYE-RRSILITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFEMNVESYRRRTALER 252 (269)
T ss_pred CCCHHHHHHHHHHHHHHHC-CCCEEEECCCCHHHHHHHCCCHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHH
T ss_conf 7998999999999999857-888899889997788775386889999999870152899755876120567875
No 50
>PRK08939 primosomal protein DnaI; Reviewed
Probab=99.16 E-value=6.4e-11 Score=87.09 Aligned_cols=117 Identities=13% Similarity=0.050 Sum_probs=76.0
Q ss_pred CCCCCCEEECCCHHH-HHHH----HHHHH-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCH-----HHHH--------
Q ss_conf 688454165361899-9999----98510-167884999878777868899999986276201-----3567--------
Q gi|254780567|r 37 GISRDDLLVHSAIEQ-AVRL----IDSWP-SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRF-----SNIA-------- 97 (246)
Q Consensus 37 ~~~~dnFiv~~~N~~-A~~~----i~~~~-~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~-----~~~~-------- 97 (246)
..+|+||...+..+. |+.. +.... ....+.|||||+.|+|||||+.++|++...... ....
T Consensus 124 ~as~~d~~~~d~~R~~a~~~a~~F~~~y~~~~~~kGlyl~G~~G~GKTyL~~aian~La~~g~~v~~v~~p~~~~~lK~s 203 (306)
T PRK08939 124 QATLADIDLDDLDRLDALMAALDFLEAYKPGEKVKGLYLYGDFGVGKTYLLAAIANELAKKGVSSTLVHFPEFIRELKNA 203 (306)
T ss_pred CCCHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHH
T ss_conf 09898648897789999999999999737698887788989999989999999999999869929998759999999998
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHCCCCCEEEEECCCCCCHHH
Q ss_conf -----64445466666653343321003---761-033545554311234215640354320022
Q gi|254780567|r 98 -----KSLDSILIDTRKPVLLEDIDLLD---FND-TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 (246)
Q Consensus 98 -----~~~~~~~~~~~~~i~iddi~~~~---~~e-e~lf~l~n~~~~~~~~iilts~~~p~~~~~ 153 (246)
.......+...+++++||+-.-. |.. +.|.-++|....++.+.++||+..+.++..
T Consensus 204 ~~d~s~~~~i~~~k~~~vLiLDDiGaE~~t~W~rd~vl~~IL~~Rm~~~lPTffTSN~~~~eLe~ 268 (306)
T PRK08939 204 ISDGSVKEKIDAVKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELEH 268 (306)
T ss_pred HCCCCHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHH
T ss_conf 64898899999984499899844465426777899899999999997499979977999999999
No 51
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.14 E-value=3.5e-09 Score=76.43 Aligned_cols=177 Identities=15% Similarity=0.069 Sum_probs=113.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHH----------------HHHHHHHHHHHHHHHHHCC-CC----
Q ss_conf 78849998787778688999999862762013567644----------------4546666665334332100-37----
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILIDTRKPVLLEDIDLL-DF---- 121 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~i~iddi~~~-~~---- 121 (246)
+-+.+.+|||||||||.+++|++++.+.-++....... ......+..++.+|.++.. .+
T Consensus 258 ~PkGvLL~GpPG~GKtl~AKAvA~e~~~p~l~l~~~~l~~~~vGesE~~~r~~f~~A~~~aP~ilfiDEidk~~~~~~~~ 337 (491)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANEWNLPLLRLDVGKLFGGIVGESESRMRQMIQLAETISPCILWIDEIDKAFSGLDSK 337 (491)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEEEHHHHHCCCCCCC
T ss_conf 99879997999987899999998663894699667997560067049999999999986198589974654542588888
Q ss_pred -C---CHHHH-HHHHHHHCCCCCEEEE-ECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHC-CCCCC
Q ss_conf -6---10335-4555431123421564-0354320022345667885212224507889789999999986662-89798
Q gi|254780567|r 122 -N---DTQLF-HIINSIHQYDSSLLMT-ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR-QIFID 194 (246)
Q Consensus 122 -~---ee~lf-~l~n~~~~~~~~iilt-s~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r-~i~l~ 194 (246)
+ ...++ .++....+....+++. +...|..++ |.|.=+-+.--.+-++.|+.+.|..|++-+.... ....+
T Consensus 338 ~d~g~s~rv~~~~Lt~m~e~~~~VfViattN~~~~L~---pellR~GRFD~~~~v~lP~~~~R~~I~~ihl~~~~~~~~~ 414 (491)
T CHL00195 338 GDSGTSNRVLATFITWLSEKKSPVFVVATANNIDSLP---LELLRKGRFDEIFFLDLPNLEERELIFKIHLKRFRPNSWQ 414 (491)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC---HHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf 8872328999999998646899769999589975589---8770898777047648959899999999998544788755
Q ss_pred HHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 899999994066-798999999999999999847787889999999867
Q gi|254780567|r 195 KKLAAYIVQRME-RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 (246)
Q Consensus 195 ~~v~~yl~~r~~-Rs~~~l~~~l~~Ld~~sl~~kr~ITi~lvk~vL~~~ 242 (246)
+--++.+++..+ -+-.+|..++..--..+...+|++|..-+...+.+.
T Consensus 415 ~~d~~~la~~t~gfsGAeIe~~v~~A~~~A~~~~r~~~~~dl~~a~~~~ 463 (491)
T CHL00195 415 NYDIEILSQLTNKFSGAEIEQSIIEAMHHAFSEKREFTTEDICLALKQL 463 (491)
T ss_pred CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHC
T ss_conf 4699999976859888999999999999998758866589999999817
No 52
>KOG0730 consensus
Probab=99.14 E-value=1.7e-09 Score=78.39 Aligned_cols=173 Identities=19% Similarity=0.231 Sum_probs=114.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHH------------HHHH----HHHHHHHHHHHHCCCCCC---
Q ss_conf 788499987877786889999998627620135676444------------5466----666653343321003761---
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLD------------SILI----DTRKPVLLEDIDLLDFND--- 123 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~------------~~~~----~~~~~i~iddi~~~~~~e--- 123 (246)
|.+.+.+|||||||||.++.++++++++.+++-.-..+. ..+. .+..++.+|.++.+.+..
T Consensus 467 ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~ 546 (693)
T KOG0730 467 PPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGS 546 (693)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCEEECCCHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHCCCCC
T ss_conf 87547777899862478999986463587264157899877518258999999999862698377446666666304787
Q ss_pred ---------HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHH--HHHHCCEEEECCCCHHHHHHHHHHHHHHCCCC
Q ss_conf ---------0335455543112342156403543200223456678--85212224507889789999999986662897
Q gi|254780567|r 124 ---------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS--RLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 (246)
Q Consensus 124 ---------e~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~S--Rl~~g~~~~I~~pdde~~~~il~k~~~~r~i~ 192 (246)
..|+.-+|.......-+|++++..|-.++.. |.. ||- -++.+++||.+.|..|++.++. ++.
T Consensus 547 ~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~A---LlRPGRlD--~iiyVplPD~~aR~~Ilk~~~k--kmp 619 (693)
T KOG0730 547 SSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPA---LLRPGRLD--RIIYVPLPDLEARLEILKQCAK--KMP 619 (693)
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHCCHH---HCCCCCCC--EEEEECCCCHHHHHHHHHHHHH--CCC
T ss_conf 5514899999999870041014708999505881012697---75986533--0575158347889999999973--399
Q ss_pred CCHH-HHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 9889-9999994066-798999999999999999847787889999999867
Q gi|254780567|r 193 IDKK-LAAYIVQRME-RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 (246)
Q Consensus 193 l~~~-v~~yl~~r~~-Rs~~~l~~~l~~Ld~~sl~~kr~ITi~lvk~vL~~~ 242 (246)
++++ -++.|+.+.+ -|-.++..+-..-..+++.+.=.+|.....++.+-+
T Consensus 620 ~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~a~~i~~~hf~~al 671 (693)
T KOG0730 620 FSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIEATEITWQHFEEAL 671 (693)
T ss_pred CCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 9865569999998546773899999999999999875265434489999999
No 53
>PRK06526 transposase; Provisional
Probab=99.14 E-value=3.1e-11 Score=89.04 Aligned_cols=137 Identities=17% Similarity=0.285 Sum_probs=82.9
Q ss_pred CCCCCEEECCC---HHHHHHHHH--HHHCCCCCEEEEECCCCCCHHHHHHHHHHHH-----CCCCHHHHHHHH-------
Q ss_conf 88454165361---899999998--5101678849998787778688999999862-----762013567644-------
Q gi|254780567|r 38 ISRDDLLVHSA---IEQAVRLID--SWPSWPSRVVILVGPSGSGKSCLANIWSDKS-----RSTRFSNIAKSL------- 100 (246)
Q Consensus 38 ~~~dnFiv~~~---N~~A~~~i~--~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~-----~~~~~~~~~~~~------- 100 (246)
.++|+|-.... |+..+.-+. .|.+. ...++|+||+|+|||||+.+++.+. +..|+.......
T Consensus 68 ktLe~fd~~~~~~l~~~~i~~La~~~fi~~-~~Nvil~G~~GtGKThLA~Alg~~A~~~G~~v~f~~~~~L~~~L~~a~~ 146 (254)
T PRK06526 68 KSLEEFDFDHQRSLKRDTIAHLGTLDFVTG-KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHH 146 (254)
T ss_pred CCHHHCCCCCCCCCCHHHHHHHHCCCHHHC-CCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHH
T ss_conf 898767865678989999999863717765-8878998999986899999999999986996799877999999999885
Q ss_pred ------HHHHHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH------HHHHH-HH
Q ss_conf ------45466666653343321003761---0335455543112342156403543200223456------67885-21
Q gi|254780567|r 101 ------DSILIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD------LCSRL-KA 164 (246)
Q Consensus 101 ------~~~~~~~~~~i~iddi~~~~~~e---e~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~D------L~SRl-~~ 164 (246)
........+.+++||+-..+.+. +.||.+++..++. +.+++||..++++|.-.++| +..|+ ..
T Consensus 147 ~g~~~~~~~~l~~~dLLIiDe~g~~~~~~~~a~~lf~li~~Rye~-~S~IiTSn~~~~~W~~~f~D~~la~AilDRL~H~ 225 (254)
T PRK06526 147 AGRLQDELVKLGRIPLLIVDEVGYIPFEAEAANLFFQLVSSRYER-ASLIVTSNKPFGRWGEVFGDDVVAAAMIDRLVHH 225 (254)
T ss_pred CCCHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCC-CCEEEECCCCHHHHHHHCCCHHHHHHHHHHHCCC
T ss_conf 580999999851368776502136447889999999999999745-8867665898668888648689999999986256
Q ss_pred CCEEEECCCCHH
Q ss_conf 222450788978
Q gi|254780567|r 165 ATVVKISLPDDD 176 (246)
Q Consensus 165 g~~~~I~~pdde 176 (246)
+.+++++-++.-
T Consensus 226 a~~i~~~G~SyR 237 (254)
T PRK06526 226 AEVISLKGDSYR 237 (254)
T ss_pred EEEEEECCCCCC
T ss_conf 289984388665
No 54
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.10 E-value=1.8e-09 Score=78.14 Aligned_cols=199 Identities=16% Similarity=0.162 Sum_probs=123.7
Q ss_pred CCCCCCCCEEECCCH-----HHHHHHHHHHHC------CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH-
Q ss_conf 766884541653618-----999999985101------67884999878777868899999986276201356764445-
Q gi|254780567|r 35 CLGISRDDLLVHSAI-----EQAVRLIDSWPS------WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS- 102 (246)
Q Consensus 35 ~~~~~~dnFiv~~~N-----~~A~~~i~~~~~------~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~- 102 (246)
.++-+|+|-. |-.. ++.+++++++.+ ..-+.+.||||||+|||.|++|++.+.+.-+++.....+..
T Consensus 146 ~~~vtF~DVa-G~~eaK~el~EiVdfLk~P~k~~~~Gak~PkGvLL~GPPGtGKTlLAkAvAgEa~vpF~~~sgsef~e~ 224 (644)
T PRK10733 146 QIKTTFADVA-GCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM 224 (644)
T ss_pred CCCCCCCCCC-CCHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCEEEEEEHHHHHHE
T ss_conf 8987710408-978999999999998129799997499799851777989987789999986455980899784773022
Q ss_pred ---------------HHHHHHHHHHHHHHHCCCCC----------C--H---HHHHHHHHHHCCCCCEEEEECCCCCCHH
Q ss_conf ---------------46666665334332100376----------1--0---3354555431123421564035432002
Q gi|254780567|r 103 ---------------ILIDTRKPVLLEDIDLLDFN----------D--T---QLFHIINSIHQYDSSLLMTARTFPVSWG 152 (246)
Q Consensus 103 ---------------~~~~~~~~i~iddi~~~~~~----------e--e---~lf~l~n~~~~~~~~iilts~~~p~~~~ 152 (246)
....+..++.||.++.+... + . +|+--.+.+..+..-++++++..|..++
T Consensus 225 ~vGvga~rVR~lF~~Ar~~aP~IIFIDEiDaig~~R~~~~~gg~~e~~~tlNqlL~EmDGf~~~~~ViviaATNrpd~LD 304 (644)
T PRK10733 225 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 304 (644)
T ss_pred EEECCHHHHHHHHHHHHHCCCEEEEEECHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCC
T ss_conf 25306899999999999669979999532203666789888983288878999999954888878769996269975547
Q ss_pred HHHHHHHH--HHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHH-HHHHHHHCCC-CCHHHHHHHHHHHHHH-HHHHC
Q ss_conf 23456678--852122245078897899999999866628979889-9999994066-7989999999999999-99847
Q gi|254780567|r 153 VCLPDLCS--RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK-LAAYIVQRME-RSLVFAEKLVDKMDNL-ALSRG 227 (246)
Q Consensus 153 ~~l~DL~S--Rl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~-v~~yl~~r~~-Rs~~~l~~~l~~Ld~~-sl~~k 227 (246)
-. |.= ||- -.+.++.||.+.|..|++.++... .++++ -++.|+++.+ -|-.++.++++.-.-. +...+
T Consensus 305 ~A---LlRPGRFD--r~I~V~lPd~~~R~~ILkvh~~~~--~l~~dvdl~~lA~~T~GfSGADLaNlvNEAAl~AaR~~k 377 (644)
T PRK10733 305 PA---LLRPGRFD--RQVVVGLPDVRGREQILKVHMRRV--PLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNK 377 (644)
T ss_pred HH---HHCCCCCC--EEEEECCCCHHHHHHHHHHHHCCC--CCCCCCCHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHCC
T ss_conf 77---71688865--599977989889999999996488--777311589884459986703332599999999987087
Q ss_pred CCCCHHHHHHHHHH
Q ss_conf 78788999999986
Q gi|254780567|r 228 MGITRSLAAEVLKE 241 (246)
Q Consensus 228 r~ITi~lvk~vL~~ 241 (246)
+.||..-+.+++..
T Consensus 378 ~~It~~d~e~A~dr 391 (644)
T PRK10733 378 RVVSMVEFEKAKDK 391 (644)
T ss_pred CCCCHHHHHHHHHH
T ss_conf 54307668998888
No 55
>PRK08853 DNA polymerase III subunits gamma and tau; Validated
Probab=99.10 E-value=1.4e-08 Score=72.70 Aligned_cols=190 Identities=13% Similarity=0.144 Sum_probs=118.7
Q ss_pred CCCCEEECCCHHHHHHHHHH-HHCCCCCEEEEE-CCCCCCHHHHHHHHHHHHCCCCH----------HHHHH------H-
Q ss_conf 84541653618999999985-101678849998-78777868899999986276201----------35676------4-
Q gi|254780567|r 39 SRDDLLVHSAIEQAVRLIDS-WPSWPSRVVILV-GPSGSGKSCLANIWSDKSRSTRF----------SNIAK------S- 99 (246)
Q Consensus 39 ~~dnFiv~~~N~~A~~~i~~-~~~~~~~~l~i~-G~~GsGKTHLl~a~~~~~~~~~~----------~~~~~------~- 99 (246)
+|++ +||. + ..+..+.+ ...+.-...||+ |+.|+|||.+++++++.-++..- .+..+ .
T Consensus 14 ~f~e-~vGQ-~-~v~~~L~nal~~~rl~haylf~G~rGvGKTt~ARi~Ak~lNC~~~~~~~pcg~C~~C~~i~~g~~~d~ 90 (717)
T PRK08853 14 QFKE-VVGQ-S-HVLTALENALAHNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCETGITSTPCGQCATCKEIDEGRFVDL 90 (717)
T ss_pred CHHH-HCCC-H-HHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCE
T ss_conf 5655-1385-9-99999999997099740576108898889899999999867899999997888702676744787752
Q ss_pred ------------HHHH---------HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC-CCCEEEEECCCCCCHHHHHHH
Q ss_conf ------------4454---------666666533433210037610335455543112-342156403543200223456
Q gi|254780567|r 100 ------------LDSI---------LIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY-DSSLLMTARTFPVSWGVCLPD 157 (246)
Q Consensus 100 ------------~~~~---------~~~~~~~i~iddi~~~~~~ee~lf~l~n~~~~~-~~~iilts~~~p~~~~~~l~D 157 (246)
.... ....+++++||.+|.+... .+--++-.+.+- ..-+.+.++..|.++.. -
T Consensus 91 ~EiDaAs~~~vdd~rel~~~~~y~p~~~~yKvyiiDEvHmls~~--afnAlLKtlEEPP~hv~FilaTT~~~kip~---T 165 (717)
T PRK08853 91 LEIDAASRTKVEDTRELLDNVQYKPARGRFKVYLIDEVHMLSRH--SFNALLKTLEEPPEYVKFLLATTDPQKLPV---T 165 (717)
T ss_pred EEECCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHCCHH--HHHHHHHHHCCCCCCEEEEEECCCHHHCCH---H
T ss_conf 45405656788999999985554887785479998305443899--999998760378756489984387343738---8
Q ss_pred HHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 67885212224507889789999999986662897988999999940667989999999999999998477878899999
Q gi|254780567|r 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237 (246)
Q Consensus 158 L~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~ITi~lvk~ 237 (246)
..||+ ..+.++..+.+.+...|.+.+...++.++++.+..|++.-..|+|+..++++.. .-..+-+||..-|++
T Consensus 166 ilSRc---~~f~l~~~~~~~i~~~l~~i~~~E~i~~~~~al~~ia~~a~Gs~Rdalsl~dqa---ia~~~g~~~~~~v~~ 239 (717)
T PRK08853 166 ILSRC---LQFHLKPISVDQIHQQLDFVLDKEQVSAEARALGLIAHAADGSMRDALSLTDQA---IALGNGQVTTDIVSH 239 (717)
T ss_pred HHHHH---HHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH---HHHCCCCCCHHHHHH
T ss_conf 98765---442326899999999999999975987699999999997688377888899999---996589716999999
Q ss_pred HHHHH
Q ss_conf 99867
Q gi|254780567|r 238 VLKET 242 (246)
Q Consensus 238 vL~~~ 242 (246)
+|.-.
T Consensus 240 mlg~~ 244 (717)
T PRK08853 240 MLGTL 244 (717)
T ss_pred HHCCC
T ss_conf 85888
No 56
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=99.09 E-value=2e-10 Score=84.10 Aligned_cols=131 Identities=17% Similarity=0.234 Sum_probs=84.9
Q ss_pred CCCCCCCCEEECCC-HHHHHHHHHHHHCC--CCCEEEEECCCCCCHHHHHHHHHHHHCCCCH-----HHHH------HHH
Q ss_conf 76688454165361-89999999851016--7884999878777868899999986276201-----3567------644
Q gi|254780567|r 35 CLGISRDDLLVHSA-IEQAVRLIDSWPSW--PSRVVILVGPSGSGKSCLANIWSDKSRSTRF-----SNIA------KSL 100 (246)
Q Consensus 35 ~~~~~~dnFiv~~~-N~~A~~~i~~~~~~--~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~-----~~~~------~~~ 100 (246)
...+++.||-..+. .+.|+..+....+| ..+.+++|||+|+|||||+.|++++.....+ +... ...
T Consensus 73 ~k~~~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKthLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 73 KKTFEEFDFEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAF 152 (254)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHH
T ss_conf 57854302358855669999999999987325882899899998799999999999998398499988599999999987
Q ss_pred -------H-HHHHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHH------HHHHHHH
Q ss_conf -------4-5466666653343321003761---033545554311234215640354320022345------6678852
Q gi|254780567|r 101 -------D-SILIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP------DLCSRLK 163 (246)
Q Consensus 101 -------~-~~~~~~~~~i~iddi~~~~~~e---e~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~------DL~SRl~ 163 (246)
. ...+...+++++||+-....++ ..+|.++...++.... ++||..++.+|...+. .+.+|+.
T Consensus 153 ~~~~~~~~l~~~l~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~~~-~~tsN~~~~~~~~~~~~~~~~e~~~dRi~ 231 (254)
T COG1484 153 DEGRLEEKLLRELKKVDLLIIDDIGYEPFSQEEADLLFQLISRRYESRSL-IITSNLSFGEWDELFGDDALTEALLDRIL 231 (254)
T ss_pred HCCCHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCC-CEEECCCHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 45526899998875289899823677668815587999999999973054-20205882788866067511689999998
Q ss_pred HCC
Q ss_conf 122
Q gi|254780567|r 164 AAT 166 (246)
Q Consensus 164 ~g~ 166 (246)
-+.
T Consensus 232 ~~~ 234 (254)
T COG1484 232 HHS 234 (254)
T ss_pred HCC
T ss_conf 616
No 57
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1.8e-08 Score=72.01 Aligned_cols=202 Identities=22% Similarity=0.232 Sum_probs=126.3
Q ss_pred CCCCCCCCEEECCCH-----HHHHHHHHHHHC-------CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 766884541653618-----999999985101-------67884999878777868899999986276201356764445
Q gi|254780567|r 35 CLGISRDDLLVHSAI-----EQAVRLIDSWPS-------WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 (246)
Q Consensus 35 ~~~~~~dnFiv~~~N-----~~A~~~i~~~~~-------~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~ 102 (246)
.+..++++.. |-.+ +.++.+....++ ++.+.+.||||||+|||.|+.+.+++.+..++.........
T Consensus 236 ~~~v~~~dig-gl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~s 314 (494)
T COG0464 236 DEDVTLDDIG-GLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLS 314 (494)
T ss_pred CCCCEEEEEC-CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCHHHHH
T ss_conf 6885145323-637799999999999997088763258988836999889997589999998754498248843355540
Q ss_pred ------------HH----HHHHHHHHHHHHHCCCCCC---------H---HHHHHHHHHHCCCCCEEEEECCCCCCHHHH
Q ss_conf ------------46----6666653343321003761---------0---335455543112342156403543200223
Q gi|254780567|r 103 ------------IL----IDTRKPVLLEDIDLLDFND---------T---QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 (246)
Q Consensus 103 ------------~~----~~~~~~i~iddi~~~~~~e---------e---~lf~l~n~~~~~~~~iilts~~~p~~~~~~ 154 (246)
.+ ......+.+|.++.+.... . .+...++........+++.++..|..++-.
T Consensus 315 k~vGesek~ir~~F~~A~~~~p~iifiDEiDs~~~~r~~~~~~~~~rv~~~ll~~~d~~e~~~~v~vi~aTN~p~~ld~a 394 (494)
T COG0464 315 KWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPA 394 (494)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHH
T ss_conf 77659999999999999966998897488666741289987637999999999997475443764899647983326875
Q ss_pred HHHHH-HHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHCC--C
Q ss_conf 45667-885212224507889789999999986662897-98899999994066-7989999999999999998477--8
Q gi|254780567|r 155 LPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIF-IDKKLAAYIVQRME-RSLVFAEKLVDKMDNLALSRGM--G 229 (246)
Q Consensus 155 l~DL~-SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~-l~~~v~~yl~~r~~-Rs~~~l~~~l~~Ld~~sl~~kr--~ 229 (246)
+ ++ .||. -.+.+++||.+.+..+++.+..+.... ..+-..+.+++..+ .+-.++..++..-...++...+ +
T Consensus 395 ~--lR~gRfd--~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~~~~ 470 (494)
T COG0464 395 L--LRPGRFD--RLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREARRRE 470 (494)
T ss_pred H--HCCCCCE--EEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 6--2436630--37871798989999999998541565115564199999875277899999999999998998545776
Q ss_pred CCHHHHHHHHHH
Q ss_conf 788999999986
Q gi|254780567|r 230 ITRSLAAEVLKE 241 (246)
Q Consensus 230 ITi~lvk~vL~~ 241 (246)
||+.-..++++.
T Consensus 471 ~~~~~~~~a~~~ 482 (494)
T COG0464 471 VTLDDFLDALKK 482 (494)
T ss_pred CCHHHHHHHHHH
T ss_conf 349999999862
No 58
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.08 E-value=1.3e-08 Score=72.89 Aligned_cols=190 Identities=13% Similarity=0.127 Sum_probs=118.3
Q ss_pred CCCCEEECCCHHHHHHHHHH-HHCCC-CCEEEEECCCCCCHHHHHHHHHHHHCCCCH----------HHHHHH-------
Q ss_conf 84541653618999999985-10167-884999878777868899999986276201----------356764-------
Q gi|254780567|r 39 SRDDLLVHSAIEQAVRLIDS-WPSWP-SRVVILVGPSGSGKSCLANIWSDKSRSTRF----------SNIAKS------- 99 (246)
Q Consensus 39 ~~dnFiv~~~N~~A~~~i~~-~~~~~-~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~----------~~~~~~------- 99 (246)
+|++ +||. + ..+..+.+ +..+. .....+.|+.|+|||.+++++++.-++..- .+..+.
T Consensus 14 ~F~e-~vGQ-~-~v~~~L~nal~~~rl~haylf~G~rGvGKTt~Ari~Ak~lNC~~~~~~~pCg~C~~C~~i~~g~~~D~ 90 (704)
T PRK08691 14 TFAD-LVGQ-E-HVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDL 90 (704)
T ss_pred CHHH-HCCC-H-HHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCE
T ss_conf 4756-4186-9-99999999998199752375027898788899999999967999999997877776787855899874
Q ss_pred --------HHHH-------------HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCC-CEEEEECCCCCCHHHHHHH
Q ss_conf --------4454-------------66666653343321003761033545554311234-2156403543200223456
Q gi|254780567|r 100 --------LDSI-------------LIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPD 157 (246)
Q Consensus 100 --------~~~~-------------~~~~~~~i~iddi~~~~~~ee~lf~l~n~~~~~~~-~iilts~~~p~~~~~~l~D 157 (246)
...+ ....+++.+||.+|.+.. ..+--++-.+.+--. -+.+.++..|..+. .-
T Consensus 91 ~EiDaAs~~~vdd~R~l~~~~~y~P~~~~yKVyiiDEvhmLs~--~afNAlLKtLEEPP~~v~FilaTTdp~Klp---~T 165 (704)
T PRK08691 91 LEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK--SAFNAMLKTLEEPPEHVKFILATTDPHKVP---VT 165 (704)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHCCH--HHHHHHHHHHCCCCCCEEEEEECCCHHHCC---HH
T ss_conf 7742454458899999998534688678535999831544389--999999986147975608998548846475---89
Q ss_pred HHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 67885212224507889789999999986662897988999999940667989999999999999998477878899999
Q gi|254780567|r 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237 (246)
Q Consensus 158 L~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~ITi~lvk~ 237 (246)
..||+ ..+.+.+.+.+.+...|.+.+...+|..+++.+..|++.-..|+|+..++++. ..-..+.+||..-|++
T Consensus 166 IlSRC---~~f~l~~~~~~~i~~~L~~i~~~E~i~~e~~al~~ia~~a~Gs~RDalslldQ---aia~~~g~~~~~~v~~ 239 (704)
T PRK08691 166 VLSRC---LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQ---AIALGSGKVAENDVRQ 239 (704)
T ss_pred HHHHH---HHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH---HHHHCCCCCCHHHHHH
T ss_conf 99888---77102689999999999999998398568999999999757857779889999---9996489626999999
Q ss_pred HHHHH
Q ss_conf 99867
Q gi|254780567|r 238 VLKET 242 (246)
Q Consensus 238 vL~~~ 242 (246)
+|.-.
T Consensus 240 mLG~~ 244 (704)
T PRK08691 240 MIGAV 244 (704)
T ss_pred HHCCC
T ss_conf 85888
No 59
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.08 E-value=7.4e-09 Score=74.39 Aligned_cols=193 Identities=13% Similarity=0.127 Sum_probs=121.8
Q ss_pred CCCCCCCCCEEECCCHHHHHHHHHH-HHCCCC-CEEEEECCCCCCHHHHHHHHHHHHCCCCHH---------------HH
Q ss_conf 7766884541653618999999985-101678-849998787778688999999862762013---------------56
Q gi|254780567|r 34 RCLGISRDDLLVHSAIEQAVRLIDS-WPSWPS-RVVILVGPSGSGKSCLANIWSDKSRSTRFS---------------NI 96 (246)
Q Consensus 34 ~~~~~~~dnFiv~~~N~~A~~~i~~-~~~~~~-~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~---------------~~ 96 (246)
..|. +|++.+ |. +..+..+.+ +..+-- ....+.|+.|+|||.+++++++.-++.... +.
T Consensus 10 ~RP~-~F~~~v-GQ--~~v~~~l~na~~~~r~~haylf~G~rGvGKTt~ari~Ak~lnc~~~~~~~g~~~~pcg~C~~C~ 85 (721)
T PRK12323 10 WRPR-DFTTLV-GQ--EHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGPDGEGGITAQPCGQCRACT 85 (721)
T ss_pred HCCC-CHHHHC-CC--HHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 0798-665532-85--9999999999971997544750279988898999999999768998667898788787765468
Q ss_pred HHH------H-------------HHH---------HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCC-EEEEECCC
Q ss_conf 764------4-------------454---------666666533433210037610335455543112342-15640354
Q gi|254780567|r 97 AKS------L-------------DSI---------LIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSS-LLMTARTF 147 (246)
Q Consensus 97 ~~~------~-------------~~~---------~~~~~~~i~iddi~~~~~~ee~lf~l~n~~~~~~~~-iilts~~~ 147 (246)
.+. . ... ....+++.+||.+|.+.. ..+--++..+.+--.. +.+.++..
T Consensus 86 ~i~~g~~~d~~EiDaas~~~v~~~r~l~~~~~y~P~~~~~KvyiiDevhmls~--~afnalLKtlEePP~hv~FilaTT~ 163 (721)
T PRK12323 86 EIDAGRFVDYIEMDAASNRGVDEMAQLLDQAVYAPTAGRFKVYMIDEVHMLTN--HAFNAMLKTLEEPPPHVKFILATTD 163 (721)
T ss_pred HHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCH--HHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf 77568987647743676788899999998545588766446999854000589--9999999840179755389994386
Q ss_pred CCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 32002234566788521222450788978999999998666289798899999994066798999999999999999847
Q gi|254780567|r 148 PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 (246)
Q Consensus 148 p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~k 227 (246)
|.++. .+-++.|+.+.+...+.+.+...|.+.+...+|..+++.+..|++.-..|+|+..++++.. .++ .+
T Consensus 164 ~~Kip------~TilSRc~~f~~~~~~~~~i~~~l~~i~~~E~i~~~~~al~~ia~~a~Gs~RDalslldQa--ia~-~~ 234 (721)
T PRK12323 164 PQKIP------VTVLSRCLQFNLKQMPPGHIVSHLDAILGQEGIGHEGNALRLLAQAAHGSMRDALSLTDQA--IAY-SA 234 (721)
T ss_pred HHHCC------HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH--HHH-CC
T ss_conf 34485------8898776542347899999999999999983997799999999997589647688899999--986-58
Q ss_pred CCCCHHHHHHHHHH
Q ss_conf 78788999999986
Q gi|254780567|r 228 MGITRSLAAEVLKE 241 (246)
Q Consensus 228 r~ITi~lvk~vL~~ 241 (246)
-+||..-|+++|.-
T Consensus 235 g~~~~~~v~~mlg~ 248 (721)
T PRK12323 235 GNVSEEAVRGMLGA 248 (721)
T ss_pred CCCCHHHHHHHHCC
T ss_conf 96269999998688
No 60
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=5.7e-09 Score=75.10 Aligned_cols=192 Identities=15% Similarity=0.168 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHCC-CCCEEEEECCCCCCHHHHHHHHHHHHCC-------CCHHHHHHH--------HHH-----------
Q ss_conf 9999999851016-7884999878777868899999986276-------201356764--------445-----------
Q gi|254780567|r 50 EQAVRLIDSWPSW-PSRVVILVGPSGSGKSCLANIWSDKSRS-------TRFSNIAKS--------LDS----------- 102 (246)
Q Consensus 50 ~~A~~~i~~~~~~-~~~~l~i~G~~GsGKTHLl~a~~~~~~~-------~~~~~~~~~--------~~~----------- 102 (246)
+.+..+......| |.| ++|||++|+|||+.++-.+++... .|+.+.... ...
T Consensus 28 ~l~~~l~~~~~~~~p~n-~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~ 106 (366)
T COG1474 28 QLASFLAPALRGERPSN-IIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDS 106 (366)
T ss_pred HHHHHHHHHHCCCCCCC-EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99999999855899860-79988999873289999999997331567579995130787879999999982689976763
Q ss_pred ---------HHHH---HHHHHHHHHHHCCCCC-CHHHHHHHHHHHCCCCCEEEEEC-CCCCCHHHHHHHHHHHHHHCCEE
Q ss_conf ---------4666---6665334332100376-10335455543112342156403-54320022345667885212224
Q gi|254780567|r 103 ---------ILID---TRKPVLLEDIDLLDFN-DTQLFHIINSIHQYDSSLLMTAR-TFPVSWGVCLPDLCSRLKAATVV 168 (246)
Q Consensus 103 ---------~~~~---~~~~i~iddi~~~~~~-ee~lf~l~n~~~~~~~~iilts~-~~p~~~~~~l~DL~SRl~~g~~~ 168 (246)
..+. ..-.+++|+++.+... .+.|++++..-.....++.+.+. ....-.....+++.||+.... +
T Consensus 107 ~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~-I 185 (366)
T COG1474 107 SLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRVKSSLGPSE-I 185 (366)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCCCHHHHEECCCCCCCEEEEEEEEECCHHHHHHHHHHHHHCCCCCE-E
T ss_conf 268999999977741875999976476541546414551112477675379999973548899987566765068763-5
Q ss_pred EECCCCHHHHHHHHHHHHHH--CCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHH---HHHC-CCCCHHHHHHHHHHH
Q ss_conf 50788978999999998666--28979889999999406679899999999999999---9847-787889999999867
Q gi|254780567|r 169 KISLPDDDFLEKVIVKMFAD--RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA---LSRG-MGITRSLAAEVLKET 242 (246)
Q Consensus 169 ~I~~pdde~~~~il~k~~~~--r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~s---l~~k-r~ITi~lvk~vL~~~ 242 (246)
..+|-+.+.+..||...+.. ..-.++++++++++....++-++++.+++.|...+ ...+ .+++...++++-++.
T Consensus 186 ~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~ 265 (366)
T COG1474 186 VFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEI 265 (366)
T ss_pred EECCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 52898989999999999985404687480399999998876186477608999999998654078853700478899875
Q ss_pred H
Q ss_conf 4
Q gi|254780567|r 243 Q 243 (246)
Q Consensus 243 ~ 243 (246)
+
T Consensus 266 ~ 266 (366)
T COG1474 266 E 266 (366)
T ss_pred H
T ss_conf 0
No 61
>PRK06872 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.05 E-value=2.4e-08 Score=71.29 Aligned_cols=190 Identities=13% Similarity=0.192 Sum_probs=120.2
Q ss_pred CCCCEEECCCHHHHHHHHHH-HHCCCC-CEEEEECCCCCCHHHHHHHHHHHHCCCCH----------HHHHH--------
Q ss_conf 84541653618999999985-101678-84999878777868899999986276201----------35676--------
Q gi|254780567|r 39 SRDDLLVHSAIEQAVRLIDS-WPSWPS-RVVILVGPSGSGKSCLANIWSDKSRSTRF----------SNIAK-------- 98 (246)
Q Consensus 39 ~~dnFiv~~~N~~A~~~i~~-~~~~~~-~~l~i~G~~GsGKTHLl~a~~~~~~~~~~----------~~~~~-------- 98 (246)
+|++.+ |. +..+.++.+ ...+.- ....+.|+.|+|||.+++++++.-++..- .+..+
T Consensus 14 ~f~~~v-gq--~~v~~~l~~a~~~~r~~haylf~g~rg~gktt~ari~ak~lnc~~~~~~~pcg~c~~c~~i~~g~~~d~ 90 (696)
T PRK06872 14 TFSEVV-GQ--EHILTALSNGLKENRLHHAYLFSGTRGVGKTSIARLFAKGLNCVHGVTATPCGECENCKAIEEGNFIDL 90 (696)
T ss_pred CHHHHC-CC--HHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCE
T ss_conf 564523-85--999999999997198630475117898888899999999867899999997888622576744787754
Q ss_pred ----------------HHHH----HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCC-EEEEECCCCCCHHHHHHH
Q ss_conf ----------------4445----4666666533433210037610335455543112342-156403543200223456
Q gi|254780567|r 99 ----------------SLDS----ILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPD 157 (246)
Q Consensus 99 ----------------~~~~----~~~~~~~~i~iddi~~~~~~ee~lf~l~n~~~~~~~~-iilts~~~p~~~~~~l~D 157 (246)
.... .....+++.+||.+|.+.. ..+--++..+.+--.. ..+.++..|.++.
T Consensus 91 ~eidaas~~~v~~~r~l~~~~~~~p~~~~~kvy~idevhmls~--~~fnallktleepp~~v~f~latt~~~k~p----- 163 (696)
T PRK06872 91 IEIDAASRTKVEDTRELLDNVQYKPVVGRFKVYLIDEVHMLSR--HSFNALLKTLEEPPEYVKFLLATTDPQKLP----- 163 (696)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHCCH--HHHHHHHHHHCCCCCCEEEEEECCCHHHCC-----
T ss_conf 6750565578899999998454577677547999700544389--999999875027975448998438632274-----
Q ss_pred HHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 67885212224507889789999999986662897988999999940667989999999999999998477878899999
Q gi|254780567|r 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237 (246)
Q Consensus 158 L~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~ITi~lvk~ 237 (246)
.+-|+.|+.+.++..+.+.+..-|.+.+...+|..+++.+..|++.-..|+|+..++++.- .++ .+-.|+..-|++
T Consensus 164 -~tilsrc~~f~~~~~~~~~i~~~l~~i~~~e~~~~~~~al~~~a~~a~gs~rdalsl~dqa--i~~-~~g~~~~~~v~~ 239 (696)
T PRK06872 164 -ITILSRCMQFHLKALDQTQIAQHLEFILTQENIPFESPALEKLAKAAQGSIRDSLSLTDQA--IAM-SNANITLDVVSN 239 (696)
T ss_pred -HHHHHHHHHEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH--HHH-CCCCCCHHHHHH
T ss_conf -8898766530026899999999999999984997799999999997589567788899999--997-589616999999
Q ss_pred HHHHH
Q ss_conf 99867
Q gi|254780567|r 238 VLKET 242 (246)
Q Consensus 238 vL~~~ 242 (246)
+|.-.
T Consensus 240 mlg~~ 244 (696)
T PRK06872 240 MLGLL 244 (696)
T ss_pred HHCCC
T ss_conf 85888
No 62
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.02 E-value=7e-09 Score=74.53 Aligned_cols=186 Identities=22% Similarity=0.253 Sum_probs=118.4
Q ss_pred CCCCEEECCCHHHHHHHHHH-HHCCCC-CEEEEECCCCCCHHHHHHHHHHHHCCCCH-H-----------HHHHH--HHH
Q ss_conf 84541653618999999985-101678-84999878777868899999986276201-3-----------56764--445
Q gi|254780567|r 39 SRDDLLVHSAIEQAVRLIDS-WPSWPS-RVVILVGPSGSGKSCLANIWSDKSRSTRF-S-----------NIAKS--LDS 102 (246)
Q Consensus 39 ~~dnFiv~~~N~~A~~~i~~-~~~~~~-~~l~i~G~~GsGKTHLl~a~~~~~~~~~~-~-----------~~~~~--~~~ 102 (246)
+|+++ ||... ....+.+ ....-. +.-.+.||-|+|||.+++++++.-+.... . .+... .+.
T Consensus 14 ~F~ev-vGQe~--v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~Dv 90 (515)
T COG2812 14 TFDDV-VGQEH--VVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDV 90 (515)
T ss_pred CHHHH-CCCHH--HHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 07776-36489--9999999998084233365137777671049999999956889877772253166686514886410
Q ss_pred HHHH------------------------HHHHHHHHHHHCCCCCCHHHHHHHHHHHC----CCC-CEEEEECCCCCCHHH
Q ss_conf 4666------------------------66653343321003761033545554311----234-215640354320022
Q gi|254780567|r 103 ILID------------------------TRKPVLLEDIDLLDFNDTQLFHIINSIHQ----YDS-SLLMTARTFPVSWGV 153 (246)
Q Consensus 103 ~~~~------------------------~~~~i~iddi~~~~~~ee~lf~l~n~~~~----~~~-~iilts~~~p~~~~~ 153 (246)
..++ .++.++||.+|.+.. +.||.+.. --. -+.+.++..|..+
T Consensus 91 iEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~------~afNALLKTLEEPP~hV~FIlATTe~~Ki-- 162 (515)
T COG2812 91 IEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSK------QAFNALLKTLEEPPSHVKFILATTEPQKI-- 162 (515)
T ss_pred HHHHHHHCCCHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHHH------HHHHHHHCCCCCCCCCEEEEEECCCCCCC--
T ss_conf 1136444548679999998724688666641899831876437------88888751113686674899853886768--
Q ss_pred HHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 34566788521222450788978999999998666289798899999994066798999999999999999847787889
Q gi|254780567|r 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233 (246)
Q Consensus 154 ~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~ITi~ 233 (246)
.+...||+. .+.+...+.+.+...|.+.+...||.++++++.++++..+.++++..++++.+-..+ ...||..
T Consensus 163 -p~TIlSRcq---~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RDalslLDq~i~~~---~~~It~~ 235 (515)
T COG2812 163 -PNTILSRCQ---RFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSLLDQAIAFG---EGEITLE 235 (515)
T ss_pred -CHHHHHCCC---CCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCC---CCCCCHH
T ss_conf -404552122---022257999999999999987448754799999999982897456777899999706---7765699
Q ss_pred HHHHHHHHH
Q ss_conf 999999867
Q gi|254780567|r 234 LAAEVLKET 242 (246)
Q Consensus 234 lvk~vL~~~ 242 (246)
-|++++.-.
T Consensus 236 ~v~~~lG~~ 244 (515)
T COG2812 236 SVRDMLGLT 244 (515)
T ss_pred HHHHHHCCC
T ss_conf 999996887
No 63
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.02 E-value=1e-08 Score=73.55 Aligned_cols=189 Identities=15% Similarity=0.195 Sum_probs=118.8
Q ss_pred CCCCEEECCCHHHHHHHHHH-HHCCC-CCEEEEECCCCCCHHHHHHHHHHHHCCCCH----------HHHHH------HH
Q ss_conf 84541653618999999985-10167-884999878777868899999986276201----------35676------44
Q gi|254780567|r 39 SRDDLLVHSAIEQAVRLIDS-WPSWP-SRVVILVGPSGSGKSCLANIWSDKSRSTRF----------SNIAK------SL 100 (246)
Q Consensus 39 ~~dnFiv~~~N~~A~~~i~~-~~~~~-~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~----------~~~~~------~~ 100 (246)
+|++ +||. +.++..|.+ ...+. ....+++||.|+|||.+++++++..++..- .+..+ ..
T Consensus 13 ~F~e-viGQ--e~v~~~L~~Ai~~gri~HAYLFsGprG~GKTt~ARilAkaLNC~~~~~~~PCg~C~sC~~i~~g~~~~~ 89 (775)
T PRK07764 13 TFAE-VVGQ--EHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTSTPCGVCDSCVALAPGGPGSL 89 (775)
T ss_pred CHHH-HCCC--HHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCC
T ss_conf 7666-2285--999999999998199763376237888788899999999966899999898888763788863898888
Q ss_pred HH-----------H-------------HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCC-CEEEEECCCCCCHHHHH
Q ss_conf 45-----------4-------------66666653343321003761033545554311234-21564035432002234
Q gi|254780567|r 101 DS-----------I-------------LIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDS-SLLMTARTFPVSWGVCL 155 (246)
Q Consensus 101 ~~-----------~-------------~~~~~~~i~iddi~~~~~~ee~lf~l~n~~~~~~~-~iilts~~~p~~~~~~l 155 (246)
+. + ....+++++||.+|.+.. ..+--++-.+.+--. -+++.++..|..+ +
T Consensus 90 DviEiDAAS~~gVddiReL~e~~~y~P~~~ryKVyIIDEaHmls~--~afNALLKtLEEPP~hvvFIlaTTep~ki---p 164 (775)
T PRK07764 90 DVVEIDAASHGGVDDARELRERAFFAPAQSRYRIFIIDEAHMVTT--AGFNALLKIVEEPPEHLIFIFATTEPEKV---I 164 (775)
T ss_pred CEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHHCH--HHHHHHHHHHCCCCCCEEEEEECCCHHHC---C
T ss_conf 668731565568899999998547687678635999853544079--99999988622786462799954873547---1
Q ss_pred HHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 56678852122245078897899999999866628979889999999406679899999999999999984778788999
Q gi|254780567|r 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235 (246)
Q Consensus 156 ~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~ITi~lv 235 (246)
+-.+||+. .+.+.....+.+...|.+.+...++.++++++..|++.-..++++..+++++|-. ......||...+
T Consensus 165 ~TI~SRcq---~f~Fr~i~~~~~~~~l~~i~~~E~i~~~~~al~li~r~~~Gs~RDalS~ldQl~a--~~~~~~v~~~~a 239 (775)
T PRK07764 165 GTIRSRTH---HYPFRLVPPGTMRPYLERICAQEGVVVDDAVLPLVIRAGGGSPRDTLSVLDQLLA--GAGDDGVTYERA 239 (775)
T ss_pred HHHHHHCC---CCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH--CCCCCCEEHHHH
T ss_conf 67764102---3452669999999999999998399879899999999828966768999999984--048884109999
Q ss_pred HHHHH
Q ss_conf 99998
Q gi|254780567|r 236 AEVLK 240 (246)
Q Consensus 236 k~vL~ 240 (246)
..+|.
T Consensus 240 ~~llG 244 (775)
T PRK07764 240 VALLG 244 (775)
T ss_pred HHHHC
T ss_conf 99858
No 64
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.02 E-value=1.4e-08 Score=72.62 Aligned_cols=195 Identities=15% Similarity=0.151 Sum_probs=125.1
Q ss_pred CCCCCCCCCCCEEECCCHHHHHHHHHH-HHCC-CCCEEEEECCCCCCHHHHHHHHHHHHCCCCHH---------------
Q ss_conf 887766884541653618999999985-1016-78849998787778688999999862762013---------------
Q gi|254780567|r 32 FPRCLGISRDDLLVHSAIEQAVRLIDS-WPSW-PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS--------------- 94 (246)
Q Consensus 32 ~~~~~~~~~dnFiv~~~N~~A~~~i~~-~~~~-~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~--------------- 94 (246)
....|. +|++.+ |. ...+..+.+ ...+ -.....+.|+.|+|||..++++++.-++....
T Consensus 15 ~k~rp~-~f~~~~-gq--~~~~~~l~~~~~~~~~~~a~l~~g~rg~gktt~ari~a~~lnc~~~~~~~~~~~~~c~~c~~ 90 (600)
T PRK09111 15 RKYRPQ-TFDDLI-GQ--EAMVRTLRNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYKGPDGVGGPTIDPCGVGEH 90 (600)
T ss_pred ECCCCC-CHHHHC-CC--HHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH
T ss_conf 101798-776633-85--99999999999729842047645789878999999999996698876668998898998865
Q ss_pred HHHHH---------------HHH----H---------HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCC-EEEEEC
Q ss_conf 56764---------------445----4---------666666533433210037610335455543112342-156403
Q gi|254780567|r 95 NIAKS---------------LDS----I---------LIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSS-LLMTAR 145 (246)
Q Consensus 95 ~~~~~---------------~~~----~---------~~~~~~~i~iddi~~~~~~ee~lf~l~n~~~~~~~~-iilts~ 145 (246)
+.... ... . ....+++.+||.+|.+.. .++--++-.+.+--.. ..+.++
T Consensus 91 c~~i~~~~~~d~~e~daas~~~v~~~r~~~~~~~~~p~~~~~kv~iidevhmls~--~afnallktleepp~~~~fi~at 168 (600)
T PRK09111 91 CQAIMEGRHVDVIEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST--AAFNALLKTLEEPPPHVKFIFAT 168 (600)
T ss_pred HHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCH--HHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 8988668998758851554578889999998605388777546999600110579--99999998762598654999962
Q ss_pred CCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 54320022345667885212224507889789999999986662897988999999940667989999999999999998
Q gi|254780567|r 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 (246)
Q Consensus 146 ~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~ 225 (246)
..|..+. .-..||+. .+.+.+.+-+.+...|.+.+...++.++++++..|++..+.|+|+..+++++. .+.
T Consensus 169 t~~~k~p---~ti~src~---~f~~~~~~~~~~~~~l~~i~~~e~~~~~~~al~~ia~~a~GS~RDaLSlLDQa--i~~- 239 (600)
T PRK09111 169 TEIRKVP---VTVLSRCQ---RFDLRRIEAEVLAAHLARIAEKEGVEVEPDALALIARAAEGSVRDGLSLLDQA--IAH- 239 (600)
T ss_pred CCHHHCC---HHHHHHHH---EECCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHH--HHC-
T ss_conf 8534375---89985441---20105799999999999999860768667799999997489842189999999--972-
Q ss_pred HCCCCCHHHHHHHHHH
Q ss_conf 4778788999999986
Q gi|254780567|r 226 RGMGITRSLAAEVLKE 241 (246)
Q Consensus 226 ~kr~ITi~lvk~vL~~ 241 (246)
.+.+||..-|+++|.-
T Consensus 240 ~~~~i~~~~v~~mLGl 255 (600)
T PRK09111 240 GAGEVTAEQVRDMLGL 255 (600)
T ss_pred CCCCCCHHHHHHHHCC
T ss_conf 7987569999998688
No 65
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.01 E-value=3.8e-08 Score=70.03 Aligned_cols=189 Identities=13% Similarity=0.160 Sum_probs=118.4
Q ss_pred CCCCEEECCCHHHHHHHHHH-HHCCC-CCEEEEECCCCCCHHHHHHHHHHHHCCCCH----------HHHHHH-------
Q ss_conf 84541653618999999985-10167-884999878777868899999986276201----------356764-------
Q gi|254780567|r 39 SRDDLLVHSAIEQAVRLIDS-WPSWP-SRVVILVGPSGSGKSCLANIWSDKSRSTRF----------SNIAKS------- 99 (246)
Q Consensus 39 ~~dnFiv~~~N~~A~~~i~~-~~~~~-~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~----------~~~~~~------- 99 (246)
+|++. ||. +.++..+.+ +..+. .....+.|+.|+|||.+++++++.-++..- .+..+.
T Consensus 14 ~f~~~-vGQ--~~v~~~l~na~~~~r~~haylf~G~rG~GKtt~ari~ak~lnc~~~~~~~pcg~c~~c~~i~~g~~~d~ 90 (643)
T PRK07994 14 TFADV-VGQ--EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDL 90 (643)
T ss_pred CHHHH-CCC--HHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCE
T ss_conf 66665-387--999999999998298663487458998888899999999967999999997876776898865898875
Q ss_pred --------H----HHH---------HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCC-CEEEEECCCCCCHHHHHHH
Q ss_conf --------4----454---------66666653343321003761033545554311234-2156403543200223456
Q gi|254780567|r 100 --------L----DSI---------LIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPD 157 (246)
Q Consensus 100 --------~----~~~---------~~~~~~~i~iddi~~~~~~ee~lf~l~n~~~~~~~-~iilts~~~p~~~~~~l~D 157 (246)
. ... ....+++++||.+|.+.. ..+--++-.+.+-.. -..+.++..|..+. .-
T Consensus 91 ~eidaas~~~vd~~rel~~~~~y~p~~~r~kvyiidEvhmls~--~afnalLKtlEePp~hv~filaTT~~~k~p---~T 165 (643)
T PRK07994 91 IEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR--HSFNALLKTLEEPPAHVKFLLATTDPQKLP---VT 165 (643)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHCCH--HHHHHHHHHHCCCCHHCEEEEECCCHHHCC---HH
T ss_conf 8863677788899999998446688778536999722101589--999999986237861008998607745484---78
Q ss_pred HHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 67885212224507889789999999986662897988999999940667989999999999999998477878899999
Q gi|254780567|r 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237 (246)
Q Consensus 158 L~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~ITi~lvk~ 237 (246)
..||+ ..+.+++.+.+.+..-|.+.+...++..+++.+..|++.-+.|+|+..+++++. .++ .+-+||..-|++
T Consensus 166 ilSRC---~~f~~~~~~~~~i~~~l~~i~~~e~i~~~~~al~~ia~~a~gs~rdalsl~dq~--i~~-~~~~~~~~~v~~ 239 (643)
T PRK07994 166 ILSRC---LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAADGSLRDALSLTDQA--IAS-GDGQVSTQAVSA 239 (643)
T ss_pred HHHHH---HHEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH--HHH-CCCCCCHHHHHH
T ss_conf 99777---650016699999999999999975998788999999997478656688899999--986-589747999999
Q ss_pred HHHH
Q ss_conf 9986
Q gi|254780567|r 238 VLKE 241 (246)
Q Consensus 238 vL~~ 241 (246)
+|.-
T Consensus 240 mlg~ 243 (643)
T PRK07994 240 MLGT 243 (643)
T ss_pred HHCC
T ss_conf 8589
No 66
>PRK05648 DNA polymerase III subunits gamma and tau; Reviewed
Probab=98.94 E-value=8.6e-08 Score=67.84 Aligned_cols=186 Identities=12% Similarity=0.112 Sum_probs=118.6
Q ss_pred CCCCEEECCCHHHHHHHHHH-HHCCC-CCEEEEECCCCCCHHHHHHHHHHHHCCCCH----------HHHHHH-------
Q ss_conf 84541653618999999985-10167-884999878777868899999986276201----------356764-------
Q gi|254780567|r 39 SRDDLLVHSAIEQAVRLIDS-WPSWP-SRVVILVGPSGSGKSCLANIWSDKSRSTRF----------SNIAKS------- 99 (246)
Q Consensus 39 ~~dnFiv~~~N~~A~~~i~~-~~~~~-~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~----------~~~~~~------- 99 (246)
+|++. ||. +..+..+.+ +...- .....+.|+.|+|||.+++++++.-++..- .+..+.
T Consensus 14 ~f~~~-~gq--~~~~~~l~~~~~~~~~~~a~l~~g~rg~gkt~~ar~~ak~lnc~~~~~~~pc~~c~~c~~i~~~~~~d~ 90 (705)
T PRK05648 14 SFREM-VGQ--THVLKALINALDNQRLHHAYLFTGTRGVGKTTIARIIAKCLNCETGVSSTPCGECSVCREIDEGRFVDL 90 (705)
T ss_pred CHHHH-CCH--HHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCE
T ss_conf 57663-281--999999999997098630465007898889899999999867789998897877600466624897763
Q ss_pred ------------HHHH---------HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----CCC-CCEEEEECCCCCCHHH
Q ss_conf ------------4454---------6666665334332100376103354555431----123-4215640354320022
Q gi|254780567|r 100 ------------LDSI---------LIDTRKPVLLEDIDLLDFNDTQLFHIINSIH----QYD-SSLLMTARTFPVSWGV 153 (246)
Q Consensus 100 ------------~~~~---------~~~~~~~i~iddi~~~~~~ee~lf~l~n~~~----~~~-~~iilts~~~p~~~~~ 153 (246)
.... ....+++++||.+|.+.. |-||.+. +-- .-..+.++..|.++.
T Consensus 91 ~e~d~as~~~v~~~r~~~~~~~~~p~~~~~kv~~idevhmls~------~~fnallktleepp~~v~f~~att~~~k~p- 163 (705)
T PRK05648 91 IEVDAASRTKVEDTRELLDNVQYAPTRGRYKVYLIDEVHMLSS------HSFNALLKTLEEPPPHVKFLLATTDPQKLP- 163 (705)
T ss_pred EEECCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHCCH------HHHHHHHHHCCCCCCCEEEEEECCCHHHCC-
T ss_conf 4451554478899999998555177677457999842654179------999999874047975459998428735375-
Q ss_pred HHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 34566788521222450788978999999998666289798899999994066798999999999999999847787889
Q gi|254780567|r 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233 (246)
Q Consensus 154 ~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~ITi~ 233 (246)
.+-|+.|+.+.++..+.+.+..-|.+.+...++..+++.+..|++.-..|+|+..++++.. .++ .+..||..
T Consensus 164 -----~t~~src~~~~~~~~~~~~~~~~l~~~~~~e~~~~~~~~~~~~~~~~~g~~rd~ls~~dq~--~~~-~~~~~~~~ 235 (705)
T PRK05648 164 -----VTILSRCLQFSLKNMSPERVVEHLSHVLGAENVPFEEDALWLLGRAADGSMRDAMSLTDQA--IAF-GEGKVLAA 235 (705)
T ss_pred -----HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH--HHC-CCCCCCHH
T ss_conf -----8999766430236899999999999999975997789999999997489677799999999--860-68840799
Q ss_pred HHHHHHHHH
Q ss_conf 999999867
Q gi|254780567|r 234 LAAEVLKET 242 (246)
Q Consensus 234 lvk~vL~~~ 242 (246)
-|+++|.-.
T Consensus 236 ~v~~mlg~~ 244 (705)
T PRK05648 236 DVRAMLGTL 244 (705)
T ss_pred HHHHHHCCC
T ss_conf 999985888
No 67
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=3.4e-08 Score=70.35 Aligned_cols=174 Identities=15% Similarity=0.242 Sum_probs=105.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH----------------HHHHHHHHHHHHHHHCCCCC----
Q ss_conf 7884999878777868899999986276201356764445----------------46666665334332100376----
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS----------------ILIDTRKPVLLEDIDLLDFN---- 122 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~i~iddi~~~~~~---- 122 (246)
|-+.+.+|||||+|||-|+.|.|++++|.++......+.. ..-.+..++.+|.++.+.+.
T Consensus 184 PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~ 263 (406)
T COG1222 184 PPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDS 263 (406)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECHHHHHCCCCCC
T ss_conf 99712766899975889999987205866999421999999834116999999998741498499983112231111368
Q ss_pred --------CHHHHHHHHHH---HCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCC
Q ss_conf --------10335455543---1123421564035432002234566788521222450788978999999998666289
Q gi|254780567|r 123 --------DTQLFHIINSI---HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 (246)
Q Consensus 123 --------ee~lf~l~n~~---~~~~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i 191 (246)
|-.+..++|.+ ...+.--|+.++..|.-++ |-|.-==+---.++++.||.+.|..|++-|+.. +
T Consensus 264 ~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LD---PALLRPGR~DRkIEfplPd~~gR~~Il~IHtrk--M 338 (406)
T COG1222 264 GTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILD---PALLRPGRFDRKIEFPLPDEEGRAEILKIHTRK--M 338 (406)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCC---HHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHH--C
T ss_conf 88850999999999998605889788768998558855557---665088754530116898978999999987621--4
Q ss_pred CCCHHH-HHHHHHCCC-CCHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHH
Q ss_conf 798899-999994066-7989999999999999998477-8788999999986
Q gi|254780567|r 192 FIDKKL-AAYIVQRME-RSLVFAEKLVDKMDNLALSRGM-GITRSLAAEVLKE 241 (246)
Q Consensus 192 ~l~~~v-~~yl~~r~~-Rs~~~l~~~l~~Ld~~sl~~kr-~ITi~lvk~vL~~ 241 (246)
++.++| ++-|++..+ -|-.++..+...---+|+...| .||..-..++.+.
T Consensus 339 ~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~K 391 (406)
T COG1222 339 NLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEK 391 (406)
T ss_pred CCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHH
T ss_conf 67667699999875389956779999998759999860473339999999999
No 68
>TIGR02902 spore_lonB ATP-dependent protease LonB; InterPro: IPR014251 This entry represents LonB, a paralog of the ATP-dependent protease La (LonA, IPR004815 from INTERPRO). LonB proteins are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ) and are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore during sporulation, under control of sigmaF . The lonB gene, despite being located immediately upstream of lonA, was shown to be monocistronic. LonB appears to be involved in the post-translation control of sigmaH, but lonB mutation did not produce an obvious sporulation defect under the conditions tested . Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and these are excluded from this entry. .
Probab=98.93 E-value=2.7e-08 Score=70.96 Aligned_cols=217 Identities=18% Similarity=0.182 Sum_probs=139.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC--CCCCCCEEECCCHHHHHHHHHHHHCCCCC-EEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 50002353481034155888776--68845416536189999999851016788-4999878777868899999986276
Q gi|254780567|r 14 DKQKNDQPKNKEEQLFFSFPRCL--GISRDDLLVHSAIEQAVRLIDSWPSWPSR-VVILVGPSGSGKSCLANIWSDKSRS 90 (246)
Q Consensus 14 ~~~~~~~~~~~~~Ql~l~~~~~~--~~~~dnFiv~~~N~~A~~~i~~~~~~~~~-~l~i~G~~GsGKTHLl~a~~~~~~~ 90 (246)
..+|...+.|+|-..-|.-|+.+ +....+=|||..+ =+.+|+....+|+. .++||||||+|||==++-.-++.+.
T Consensus 35 ESkKEl~kLn~mR~I~Lt~PL~Ek~RP~SF~EIiGQe~--GI~ALKAALCGPNPQHVIiYGPPGVGKTAAARLVLeeAKk 112 (532)
T TIGR02902 35 ESKKELDKLNKMRAIRLTEPLSEKTRPKSFDEIIGQEE--GIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKK 112 (532)
T ss_pred CCHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCHH--HHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 47689987611143416788774667776332567355--6899998606868963898788696178999999998650
Q ss_pred C----------C--HHHHHHHHHHHHHHHH----------------------------------HHHHHHHHHCCC----
Q ss_conf 2----------0--1356764445466666----------------------------------653343321003----
Q gi|254780567|r 91 T----------R--FSNIAKSLDSILIDTR----------------------------------KPVLLEDIDLLD---- 120 (246)
Q Consensus 91 ~----------~--~~~~~~~~~~~~~~~~----------------------------------~~i~iddi~~~~---- 120 (246)
. + +++++..+++--+... ..+.+|.+--++
T Consensus 113 ~~~SPFke~A~FVEiDATT~RFDERGIADPLIGSVHDPIYQGAGplG~AGIPQPK~GAVT~AHGGvLFIDEIGELHP~~M 192 (532)
T TIGR02902 113 NPASPFKEEAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGVAGIPQPKPGAVTKAHGGVLFIDEIGELHPVQM 192 (532)
T ss_pred CCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHH
T ss_conf 87537898866898505103602146666567761585333765457885575877763202586551212466582435
Q ss_pred --------------------CCCHHHHHHHHHHHCC----CCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEE--CCCC
Q ss_conf --------------------7610335455543112----3421564035432002234566788521222450--7889
Q gi|254780567|r 121 --------------------FNDTQLFHIINSIHQY----DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI--SLPD 174 (246)
Q Consensus 121 --------------------~~ee~lf~l~n~~~~~----~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I--~~pd 174 (246)
.+.+.+=..+-...++ .=+++=+.++.|.++. |-||||+- || .+++
T Consensus 193 NKLLKVLEDRKVFLdSAYY~s~~pniP~hI~dIFqnGlPADFRLiGATTR~PeEIp---PAlRSRC~-----EIFFR~L~ 264 (532)
T TIGR02902 193 NKLLKVLEDRKVFLDSAYYSSEDPNIPSHIRDIFQNGLPADFRLIGATTRNPEEIP---PALRSRCV-----EIFFRPLL 264 (532)
T ss_pred HHHHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCC---HHHHCCCE-----EEEECCCC
T ss_conf 31411330222000012358777865427899720678734012133369877678---34650522-----67716888
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHH
Q ss_conf 789999999986662897988999999940667989999999999999998477-8788999999986
Q gi|254780567|r 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM-GITRSLAAEVLKE 241 (246)
Q Consensus 175 de~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr-~ITi~lvk~vL~~ 241 (246)
+|+...|-++.++.=+++|+++.++.|.. +.+|-|++.+++..=.-.++-++| +|+..-|.=|.+.
T Consensus 265 ~EEi~~iAk~AaeKIg~~l~~~Al~~I~~-Ya~nGREAvN~~QLAaG~a~~E~Rk~I~~~DieWV~~~ 331 (532)
T TIGR02902 265 KEEIKEIAKNAAEKIGLNLEKEALDLIAK-YASNGREAVNLVQLAAGIALGENRKRILAEDIEWVIES 331 (532)
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHCCCCHHHHHHHHHHHHEECCCCCEECHHHHHHHHHH
T ss_conf 78999998765653046547547999998-74054067789999731401288761205464455530
No 69
>PRK08770 DNA polymerase III subunits gamma and tau; Validated
Probab=98.92 E-value=1.3e-07 Score=66.73 Aligned_cols=186 Identities=19% Similarity=0.227 Sum_probs=118.6
Q ss_pred CCCCEEECCCHHHHHHHHHH-HHCCCC-CEEEEECCCCCCHHHHHHHHHHHHCCCCH----------HHHHHH-------
Q ss_conf 84541653618999999985-101678-84999878777868899999986276201----------356764-------
Q gi|254780567|r 39 SRDDLLVHSAIEQAVRLIDS-WPSWPS-RVVILVGPSGSGKSCLANIWSDKSRSTRF----------SNIAKS------- 99 (246)
Q Consensus 39 ~~dnFiv~~~N~~A~~~i~~-~~~~~~-~~l~i~G~~GsGKTHLl~a~~~~~~~~~~----------~~~~~~------- 99 (246)
+|++. ||. +..+..+.+ +...-- ....+.|+.|+|||.+++++++.-++..- .+..+.
T Consensus 14 ~f~~~-~gq--~~~~~~l~~~~~~~~~~~a~lf~g~rg~gkt~~ar~~a~~lnc~~~~~~~pc~~c~~c~~i~~~~~~d~ 90 (663)
T PRK08770 14 RFAEL-VGQ--EHVVRALSNALDSGRVHHAFLFTGTRGVGKTTIARIFAKSLNCETGTSADPCGQCPACLDIDAGRYIDL 90 (663)
T ss_pred CHHHH-CCC--HHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCE
T ss_conf 46452-285--999999999997099740476227998888899999999867899999997877877898854898865
Q ss_pred ------------HHHH---------HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----CCCC-CEEEEECCCCCCHHH
Q ss_conf ------------4454---------6666665334332100376103354555431----1234-215640354320022
Q gi|254780567|r 100 ------------LDSI---------LIDTRKPVLLEDIDLLDFNDTQLFHIINSIH----QYDS-SLLMTARTFPVSWGV 153 (246)
Q Consensus 100 ------------~~~~---------~~~~~~~i~iddi~~~~~~ee~lf~l~n~~~----~~~~-~iilts~~~p~~~~~ 153 (246)
.... ....+++.+||.+|.+.. |-||.+. +--. -..+.++..|.++..
T Consensus 91 ~e~daas~~~v~~~r~~~~~~~~~p~~~~~kvy~idevhmls~------~~fna~lktleepp~~v~f~~att~~~k~p~ 164 (663)
T PRK08770 91 LEIDAASNTGVDDVREVIENAQYMPSRGKFKVYLIDEVHMLSK------AAFNALLKTLEEPPEHVKFLLATTDPQKLPV 164 (663)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHCCH------HHHHHHHHHHCCCCCCEEEEEECCCHHHCCH
T ss_conf 8864676588899999998443588777436999700433289------9999998740278644289985487333748
Q ss_pred HHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 34566788521222450788978999999998666289798899999994066798999999999999999847787889
Q gi|254780567|r 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233 (246)
Q Consensus 154 ~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~ITi~ 233 (246)
-..|| |+.+.++..+.+.+..-|.+.+...++..+++.+..|++.-..|+|+..++++.. .++ .+-.||..
T Consensus 165 ---t~~sr---c~~f~~~~~~~~~~~~~l~~~~~~e~~~~~~~~~~~~~~~~~gs~rd~lsl~~q~--~~~-~~~~~~~~ 235 (663)
T PRK08770 165 ---TVLSR---CLQFNLKRLDEDQIQGQMTRILAAEQIESDPSAIVQLSKAADGSLRDGLSLLDQA--IAY-AGGALRED 235 (663)
T ss_pred ---HHHHH---HHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH--HHH-CCCCCCHH
T ss_conf ---99988---8763437799999999999999983997699999999997478567788899999--986-68976899
Q ss_pred HHHHHHHHH
Q ss_conf 999999867
Q gi|254780567|r 234 LAAEVLKET 242 (246)
Q Consensus 234 lvk~vL~~~ 242 (246)
-|+++|.-.
T Consensus 236 ~v~~mlg~~ 244 (663)
T PRK08770 236 VVRTMLGTV 244 (663)
T ss_pred HHHHHHCCC
T ss_conf 999984888
No 70
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family; InterPro: IPR014252 This entry shows some relation to the widely distributed ATP-dependent protease La, also called Lon or LonA (IPR004815 from INTERPRO), but is more closely related to LonB (IPR014251 from INTERPRO), a LonA paralog found only in endospore-forming bacteria. Proteins in this entry are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ). They are restricted to a subset of endospore-forming species, and probably participate in the program of endospore formation. We propose the designation LonC..
Probab=98.91 E-value=3.6e-08 Score=70.19 Aligned_cols=195 Identities=18% Similarity=0.223 Sum_probs=125.2
Q ss_pred CCCCCCCCEEECCCHHHHHHHHHHHHCCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH----------
Q ss_conf 7668845416536189999999851016788-49998787778688999999862762013567644454----------
Q gi|254780567|r 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSR-VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI---------- 103 (246)
Q Consensus 35 ~~~~~~dnFiv~~~N~~A~~~i~~~~~~~~~-~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~~---------- 103 (246)
+..|+. |||. +-|++++-+=..+|+. .++||||||+|||.-++..-++.+....+.........
T Consensus 151 P~~f~E---iVGQ--erAI~aLlaK~aSPfPQHiiLYGPPGVGKTTaARl~LEe~K~~~~tPF~~DA~FvEVDGtTLRWD 225 (616)
T TIGR02903 151 PRAFSE---IVGQ--ERAIKALLAKLASPFPQHIILYGPPGVGKTTAARLALEEAKKLKNTPFAEDAPFVEVDGTTLRWD 225 (616)
T ss_pred CCCCCC---CCCH--HHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCC
T ss_conf 766764---3334--68999999763188866078557338847899999876213687447611378575157626677
Q ss_pred ----------------HHHHH---------------------HHHHHHHHHCCC------------------------CC
Q ss_conf ----------------66666---------------------653343321003------------------------76
Q gi|254780567|r 104 ----------------LIDTR---------------------KPVLLEDIDLLD------------------------FN 122 (246)
Q Consensus 104 ----------------~~~~~---------------------~~i~iddi~~~~------------------------~~ 122 (246)
..-+. ..+.||.+--++ -+
T Consensus 226 PREvTNPLLGSVHDPIYQGa~RDLAE~GvPEPk~GLVT~AHGGvLFIDEIGELD~lLQnKLLKVLEDKrV~F~SsYYDpd 305 (616)
T TIGR02903 226 PREVTNPLLGSVHDPIYQGARRDLAETGVPEPKLGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPD 305 (616)
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 41014776776257655676401104787989898710047756765021122278763244432264366532124875
Q ss_pred CHHHHHHHHHHHCCCCC----EEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 10335455543112342----15640354320022345667885212224507889789999999986662897988999
Q gi|254780567|r 123 DTQLFHIINSIHQYDSS----LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198 (246)
Q Consensus 123 ee~lf~l~n~~~~~~~~----iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~ 198 (246)
++..=..+-.+.+.|-+ ++=+.++.|++++ |-|||||. =+=.+|++-+....|+.+.|..-++.|.++|-
T Consensus 306 D~NvPkYIK~lFe~GAPADFvLIGATTr~P~eIN---pALRSRCa---EvfFePL~p~dI~~Iv~~AA~klnv~L~~gV~ 379 (616)
T TIGR02903 306 DENVPKYIKKLFEEGAPADFVLIGATTRDPEEIN---PALRSRCA---EVFFEPLTPEDIKEIVLNAAEKLNVKLAEGVE 379 (616)
T ss_pred CCCCCHHHHHHHCCCCCCCEEEECCCCCCHHHCC---HHHHCCCC---EEECCCCCHHHHHHHHHHHHHHCCCCCCCCHH
T ss_conf 3786558888522688825687266158824405---12330143---13217988789999999988861770003648
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHC---------CCCCHHHHHHHHHH
Q ss_conf 99994066798999999999999999847---------78788999999986
Q gi|254780567|r 199 AYIVQRMERSLVFAEKLVDKMDNLALSRG---------MGITRSLAAEVLKE 241 (246)
Q Consensus 199 ~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~k---------r~ITi~lvk~vL~~ 241 (246)
+.|+... =.-|.+.++|.....+++..+ =.||...+.+|+.-
T Consensus 380 e~Ia~YT-ieGRkAvnILAD~Yg~~ly~~~~~~~~~d~~~I~~~dv~evv~~ 430 (616)
T TIGR02903 380 ELIARYT-IEGRKAVNILADVYGYALYKKAEALKEEDKVTITADDVKEVVQI 430 (616)
T ss_pred HHHHHCC-CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHH
T ss_conf 7872147-13112223465467676530455567777426618677767753
No 71
>TIGR01241 FtsH_fam ATP-dependent metallopeptidase HflB; InterPro: IPR005936 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. FtsH is a membrane-anchored ATP-dependent protease that degrades misfolded or misassembled membrane proteins as well as a subset of cytoplasmic regulatory proteins. FtsH is a 647-residue protein of 70 kDa, with two putative transmembrane segments towards its N terminus which anchor the protein to the membrane, giving rise to a periplasmic domain of 70 residues and a cytoplasmic segment of 520 residues containing the ATPase and protease domains . ; GO: 0004222 metalloendopeptidase activity, 0030163 protein catabolic process, 0016020 membrane.
Probab=98.91 E-value=2.4e-08 Score=71.27 Aligned_cols=184 Identities=18% Similarity=0.237 Sum_probs=125.2
Q ss_pred HHHHHHHHHCC------CCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHH----------------HHHHHHHHHHHH
Q ss_conf 99999851016------78849998787778688999999862762013567----------------644454666666
Q gi|254780567|r 52 AVRLIDSWPSW------PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIA----------------KSLDSILIDTRK 109 (246)
Q Consensus 52 A~~~i~~~~~~------~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~----------------~~~~~~~~~~~~ 109 (246)
.++.|+++.+- .-+.+.||||||+|||=|++|+|-+.+-=+++..= ..+......+..
T Consensus 74 iVdFLK~P~kf~~LGaKIPKGVLLvGPPGTGKTLLAKAvAGEA~VPFF~iSGSdFVEMFVGVGASRVRDLFeqAK~nAPC 153 (505)
T TIGR01241 74 IVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPC 153 (505)
T ss_pred HHHHCCCCHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCEEECCCCEEECCCCCCCEEHHHHHHHHHHHCCC
T ss_conf 34222696379872788987147317878424678875202588962474076101112056400014457999971897
Q ss_pred HHHHHHHHCCCC-----------C--CHHHHHH---HHHHHCCCCCEEEEECCCCCCHHHHHHHHH-HHHHHCCEEEECC
Q ss_conf 533433210037-----------6--1033545---554311234215640354320022345667-8852122245078
Q gi|254780567|r 110 PVLLEDIDLLDF-----------N--DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCLPDLC-SRLKAATVVKISL 172 (246)
Q Consensus 110 ~i~iddi~~~~~-----------~--ee~lf~l---~n~~~~~~~~iilts~~~p~~~~~~l~DL~-SRl~~g~~~~I~~ 172 (246)
+|.||.++.+-. | |+.|-.+ .+-+..+.+-||++++..|--++-.| || =||= =.+.|..
T Consensus 154 IIFIDEIDAVGr~RGaG~lGGGnDEREQTLNQLLVEMDGF~~~~gvIv~AATNRPDvLD~AL--LRPGRFD--RQv~V~~ 229 (505)
T TIGR01241 154 IIFIDEIDAVGRQRGAGELGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPAL--LRPGRFD--RQVVVDL 229 (505)
T ss_pred EEEEECHHHCCCCCCCCCCCCCCCHHHHHHHHHHEECCCCCCCCCEEEEEECCCCCCCCCCC--CCCCCCC--CEEECCC
T ss_conf 05640100003335643667654135543323313317858988579985048841165100--6878744--5134588
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCHHH-HHHHHHCCC-CCHHHHHHHHHHHHHHH-HHHCCCCCHHHHHHHHHH
Q ss_conf 8978999999998666289798899-999994066-79899999999999999-984778788999999986
Q gi|254780567|r 173 PDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRME-RSLVFAEKLVDKMDNLA-LSRGMGITRSLAAEVLKE 241 (246)
Q Consensus 173 pdde~~~~il~k~~~~r~i~l~~~v-~~yl~~r~~-Rs~~~l~~~l~~Ld~~s-l~~kr~ITi~lvk~vL~~ 241 (246)
||-.-|.+||+=|+.. ++|+++| ++-||++.+ =|=.+|.+++|.=.-+| -..++.||..-+.|+...
T Consensus 230 PD~~GR~~IL~VH~~~--~kLa~~vdL~~~Ar~TPGfSGADLaNl~NEAALlAAR~n~~~i~~~~~eeA~Dr 299 (505)
T TIGR01241 230 PDIKGREEILKVHAKN--KKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEITMNDIEEAVDR 299 (505)
T ss_pred CCHHHHHHHHHHHHCC--CCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHH
T ss_conf 8746789999998548--899702477999701568767889999999999986179865628889878776
No 72
>KOG0735 consensus
Probab=98.89 E-value=9.5e-08 Score=67.57 Aligned_cols=174 Identities=19% Similarity=0.227 Sum_probs=112.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCC------CHHHHHH----------HHHHHHH----HHHHHHHHHHHHCCCC-CC
Q ss_conf 849998787778688999999862762------0135676----------4445466----6666533433210037-61
Q gi|254780567|r 65 RVVILVGPSGSGKSCLANIWSDKSRST------RFSNIAK----------SLDSILI----DTRKPVLLEDIDLLDF-ND 123 (246)
Q Consensus 65 ~~l~i~G~~GsGKTHLl~a~~~~~~~~------~~~~~~~----------~~~~~~~----~~~~~i~iddi~~~~~-~e 123 (246)
..++|+||+|+|||.|+++++++.... +..+... .....+. .+..++++||++.+.+ ..
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~ 511 (952)
T KOG0735 432 GNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASS 511 (952)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHCCCC
T ss_conf 61898679987776999999987515650699997522104204899999999999998863780899705035405684
Q ss_pred ----------HHHHHHHHH----HHCCCCCE-EEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf ----------033545554----31123421-564035432002234566788521222450788978999999998666
Q gi|254780567|r 124 ----------TQLFHIINS----IHQYDSSL-LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 (246)
Q Consensus 124 ----------e~lf~l~n~----~~~~~~~i-ilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~ 188 (246)
+.+-+++|. ....++.+ ++++. .+..-.-|.|-|-..--.++.+++|+...|.+||...+..
T Consensus 512 ~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~---qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~ 588 (952)
T KOG0735 512 NENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATG---QELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSK 588 (952)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEC---HHHHHCCHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 4477302899999999999999987068579999851---4342038533476314788815892356799999999975
Q ss_pred CCCCCCHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHH----HC-CCCCHHHHHHHHHH
Q ss_conf 289798899999994066-7989999999999999998----47-78788999999986
Q gi|254780567|r 189 RQIFIDKKLAAYIVQRME-RSLVFAEKLVDKMDNLALS----RG-MGITRSLAAEVLKE 241 (246)
Q Consensus 189 r~i~l~~~v~~yl~~r~~-Rs~~~l~~~l~~Ld~~sl~----~k-r~ITi~lvk~vL~~ 241 (246)
+.+.+..+.+++++...+ -...++.-++++.-..++. .+ +-+|..+..+.|++
T Consensus 589 ~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~klltke~f~ksL~~ 647 (952)
T KOG0735 589 NLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLLTKELFEKSLKD 647 (952)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 53454567899888760784404479999999999998875167631018899999874
No 73
>TIGR00763 lon ATP-dependent protease La; InterPro: IPR004815 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This signature defines the bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). This family of sequences does not include the archaeal lon homologs, IPR004663 from INTERPRO. In the eukaryotes the majority of the proteins are located in the mitochondrial matrix , . In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response .; GO: 0004176 ATP-dependent peptidase activity, 0005524 ATP binding, 0006510 ATP-dependent proteolysis.
Probab=98.87 E-value=3.7e-09 Score=76.26 Aligned_cols=152 Identities=18% Similarity=0.228 Sum_probs=101.2
Q ss_pred CCC-EEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH-----------------HH-------HHHHHHHHHHHH
Q ss_conf 788-49998787778688999999862762013567644454-----------------66-------666653343321
Q gi|254780567|r 63 PSR-VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI-----------------LI-------DTRKPVLLEDID 117 (246)
Q Consensus 63 ~~~-~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~~-----------------~~-------~~~~~i~iddi~ 117 (246)
.++ .|+|+||||+|||.|++++|+.-+..|+...-....+. .+ ...-++.+|.|+
T Consensus 448 ~GpqIlClvGPPGVGKTSlg~SIA~ALnRkFvR~SlGG~~DeAEIrGHRRTYvGAMPGriiQ~lk~~~t~NPl~LlDEID 527 (941)
T TIGR00763 448 KGPQILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTKNPLILLDEID 527 (941)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEEEEECCCEEHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEE
T ss_conf 88767872072695422278999999688049995267220311278643203467257899987604158806862022
Q ss_pred CCC--CCCH-----HH-------------HHHHHHHHCCCCCEE--EEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCH
Q ss_conf 003--7610-----33-------------545554311234215--6403543200223456678852122245078897
Q gi|254780567|r 118 LLD--FNDT-----QL-------------FHIINSIHQYDSSLL--MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 (246)
Q Consensus 118 ~~~--~~ee-----~l-------------f~l~n~~~~~~~~ii--lts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdd 175 (246)
.+. .+-. +| =|.++-=..-. +++ |.++.. .++.+-+=|+-||. +++|.--..
T Consensus 528 K~~~~~~~~GDPaSALLEvLDPEQN~~F~DHYldvp~DLS-~V~CyFi~TAN--~~d~IP~PLLDRME---vI~lsGY~~ 601 (941)
T TIGR00763 528 KIGLKSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLS-KVLCYFIATAN--SIDTIPRPLLDRME---VIELSGYTE 601 (941)
T ss_pred EECCCCCCCCCHHHHHHHHCCHHHCCCCCCCCCCCCCCHH-HHHHHEEECCC--CCCCCCCCCCCCEE---EEECCCCCH
T ss_conf 0016788655637888641286436042553002340042-00210002447--57677722137402---452388876
Q ss_pred HHHHHHHHHHHHH----------CCCCCCHHHHHHHHHCCCCCH--HHHHHHHHHHH
Q ss_conf 8999999998666----------289798899999994066798--99999999999
Q gi|254780567|r 176 DFLEKVIVKMFAD----------RQIFIDKKLAAYIVQRMERSL--VFAEKLVDKMD 220 (246)
Q Consensus 176 e~~~~il~k~~~~----------r~i~l~~~v~~yl~~r~~Rs~--~~l~~~l~~Ld 220 (246)
+++..|.++|+== .++.++++++..|++++.|+- |.+..-+++|-
T Consensus 602 ~EK~~IA~~yLiP~~~~~~GL~~~~l~~~d~al~~lI~~YtREaGVRNL~r~I~~i~ 658 (941)
T TIGR00763 602 EEKLEIAKKYLIPKALEDHGLKPDELKISDEALLLLIKYYTREAGVRNLERQIEKIC 658 (941)
T ss_pred HHHHHHHHHCCHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 789999985471367987088813221268999999987513202133899999999
No 74
>KOG2035 consensus
Probab=98.83 E-value=9.2e-08 Score=67.65 Aligned_cols=164 Identities=17% Similarity=0.224 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHC-CCCCEEEEECCCCCCHHHHHHHHHHHHCCCC-----------------------HH-HHHHHHHHH
Q ss_conf 8999999985101-6788499987877786889999998627620-----------------------13-567644454
Q gi|254780567|r 49 IEQAVRLIDSWPS-WPSRVVILVGPSGSGKSCLANIWSDKSRSTR-----------------------FS-NIAKSLDSI 103 (246)
Q Consensus 49 N~~A~~~i~~~~~-~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~-----------------------~~-~~~~~~~~~ 103 (246)
++.+-..+.+... +....+.+|||+|+||-..+.++-++.-+.. +. .........
T Consensus 18 ~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPS 97 (351)
T KOG2035 18 HEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPS 97 (351)
T ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCHHEEEEEEEEECCCCCEEEEEEECCCCEEEECHH
T ss_conf 88888999874145778707888889887211189999988578724505666788648886379999425651774734
Q ss_pred HHHHHHHH--------------------------HHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 66666653--------------------------3433210037610335455543112342156403543200223456
Q gi|254780567|r 104 LIDTRKPV--------------------------LLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 (246)
Q Consensus 104 ~~~~~~~i--------------------------~iddi~~~~~~ee~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~D 157 (246)
....++-+ ++...+.+..+.+.-+----+-+.++.+++++++.... ..+-
T Consensus 98 DaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~Sr----iIep 173 (351)
T KOG2035 98 DAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTSR----IIEP 173 (351)
T ss_pred HCCCCCHHHHHHHHHHHHHHCCHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC----CHHH
T ss_conf 337511799999999987414133326665489998035765088999999999998607169999267430----2267
Q ss_pred HHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 67885212224507889789999999986662897988999999940667989999999999
Q gi|254780567|r 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 (246)
Q Consensus 158 L~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~L 219 (246)
++||+ +.+.++.|+|++...++.+.+...++.+|++++.-|++..+|+++-+.-.++..
T Consensus 174 IrSRC---l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~nLRrAllmlE~~ 232 (351)
T KOG2035 174 IRSRC---LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRNLRRALLMLEAV 232 (351)
T ss_pred HHHHE---EEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 76220---587678998789999999999873344849999999997064399999999999
No 75
>CHL00181 cbbX CbbX; Provisional
Probab=98.80 E-value=1.5e-07 Score=66.42 Aligned_cols=153 Identities=13% Similarity=0.172 Sum_probs=92.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCC-------------------HHHHHHHHHHHHHHH-HHHHHHHHHHCCCC---
Q ss_conf 8499987877786889999998627620-------------------135676444546666-66533433210037---
Q gi|254780567|r 65 RVVILVGPSGSGKSCLANIWSDKSRSTR-------------------FSNIAKSLDSILIDT-RKPVLLEDIDLLDF--- 121 (246)
Q Consensus 65 ~~l~i~G~~GsGKTHLl~a~~~~~~~~~-------------------~~~~~~~~~~~~~~~-~~~i~iddi~~~~~--- 121 (246)
..+++.||||+|||..++.+++-..... +.............+ -.+++||....+..
T Consensus 60 ~h~vF~GnPGTGKTTVARl~a~il~~lG~L~~g~vve~~r~dLvg~yvG~Ta~kt~~~i~~a~GGVLfIDEAY~L~~~~~ 139 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYRLGYIKKGHLITVTRDDLVGQYIGHTAPKTKEVLKKAMGGVLFIDEAYYLYKPDN 139 (287)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHCCCCCCCCHHHHHHHHHHCCCCEEEEECHHHHCCCCC
T ss_conf 53888789986799999999999998699558958995358841635352169999999964598799824465357889
Q ss_pred ----CCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHH---HHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf ----6103354555431123421564035432002234---566788521222450788978999999998666289798
Q gi|254780567|r 122 ----NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCL---PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194 (246)
Q Consensus 122 ----~ee~lf~l~n~~~~~~~~iilts~~~p~~~~~~l---~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~ 194 (246)
-.|++--+..........+++.-...|.++.-++ |.|+|||... ++++.-+++.+..|...++..++..++
T Consensus 140 ~~dfg~eaidtLl~~me~~~~~lvvI~AGY~~eM~~fl~~NpGL~sRf~~~--i~F~dYt~~EL~~I~~~~~~~~~~~l~ 217 (287)
T CHL00181 140 ERDYGAEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRVANH--VDFPDYTPEELLQIAKMMLEEQQYQLT 217 (287)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCHHHHCCCE--EECCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 998379999999999870799889998467899999998590478768872--377985999999999999998698258
Q ss_pred HHHHHHHHHCC----C----CCHHHHHHHHHHH
Q ss_conf 89999999406----6----7989999999999
Q gi|254780567|r 195 KKLAAYIVQRM----E----RSLVFAEKLVDKM 219 (246)
Q Consensus 195 ~~v~~yl~~r~----~----Rs~~~l~~~l~~L 219 (246)
+++..-+.+.+ . .+-+.+++++++.
T Consensus 218 ~~a~~~l~~~~~~~~~~~~FGNaR~vrnl~e~a 250 (287)
T CHL00181 218 PEAEKVLLDYIKRRMEQPLFANARSVRNAIDRA 250 (287)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 799999999999850899987489999999999
No 76
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=98.77 E-value=2.2e-07 Score=65.36 Aligned_cols=173 Identities=17% Similarity=0.301 Sum_probs=111.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHH------------H----HHHHHHHHHHHHHHHHCCCCCCH-
Q ss_conf 678849998787778688999999862762013567644------------4----54666666533433210037610-
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL------------D----SILIDTRKPVLLEDIDLLDFNDT- 124 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~------------~----~~~~~~~~~i~iddi~~~~~~ee- 124 (246)
.|-+.+.+|||||+|||-|+.+++++.++.++.-.-... . ...-.+...+.+|.++.+.-..+
T Consensus 238 ePPkG~ll~GPPGtGktllaka~ane~~a~f~~inGPeimsky~Ge~e~~lr~if~eaeenaP~iifideidaiaPkr~e 317 (980)
T TIGR01243 238 EPPKGVLLYGPPGTGKTLLAKAVANEAGAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREE 317 (980)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEECHHHCCCCCCC
T ss_conf 99873587558986178999998753055178850603443313630789999998653058707874121100764100
Q ss_pred -----------HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf -----------335455543112342156403543200223456678852122245078897899999999866628979
Q gi|254780567|r 125 -----------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193 (246)
Q Consensus 125 -----------~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l 193 (246)
.|+.+.+.+...|+-+++.+...|..++ |-|+---+.---+.|..||...+..||+-+ .|++.+
T Consensus 318 ~~Geve~r~v~qlltlmdGlk~rG~v~viGatnrP~a~d---PalrrPGrfdrei~~~~Pd~~~r~eil~~h--tr~mP~ 392 (980)
T TIGR01243 318 VTGEVEKRVVAQLLTLMDGLKGRGKVIVIGATNRPDALD---PALRRPGRFDREIEIGVPDKEGRKEILQIH--TRNMPL 392 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC---HHHCCCCCCCCEEEECCCCHHHHHHHHHHH--HCCCCC
T ss_conf 001688999999999974002487289981468850026---224278864433574188545678888764--147875
Q ss_pred CHHHH----HHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 88999----99994066798999999999999999847787889999999867
Q gi|254780567|r 194 DKKLA----AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 (246)
Q Consensus 194 ~~~v~----~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~ITi~lvk~vL~~~ 242 (246)
.+|+- --+++.++.+-+.-..-++++ .-...+.-+-.-+++++++.
T Consensus 393 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 442 (980)
T TIGR01243 393 AEDVDKDAVIKVLKDLEKDERFEKEKIEKI---IEKVSKANSEDEIKEILKED 442 (980)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHC
T ss_conf 011005789999987666556678899999---99886310267899997501
No 77
>KOG0733 consensus
Probab=98.75 E-value=2.2e-07 Score=65.36 Aligned_cols=123 Identities=22% Similarity=0.307 Sum_probs=58.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHH----------------HHHHHHHHHHHHHHHHHHCCCCCCH--
Q ss_conf 7884999878777868899999986276201356764----------------4454666666533433210037610--
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS----------------LDSILIDTRKPVLLEDIDLLDFNDT-- 124 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~i~iddi~~~~~~ee-- 124 (246)
|-+.+.++||||||||.|+++++++.+--++.-.+.. +......+..+++||+++.+....+
T Consensus 222 PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~a 301 (802)
T KOG0733 222 PPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEA 301 (802)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCCCCEEEECCHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHH
T ss_conf 99751644899864789999975212885485141465315575228999999998736697599851100136440457
Q ss_pred ----------HHHHHHHHHHCC---CCC-EEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf ----------335455543112---342-1564035432002234566788521222450788978999999998666
Q gi|254780567|r 125 ----------QLFHIINSIHQY---DSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 (246)
Q Consensus 125 ----------~lf~l~n~~~~~---~~~-iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~ 188 (246)
.|....+.+... |.. +|+.++..|..++-. |+--=+--.-+.|.-|+...|..||..+|..
T Consensus 302 qreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpa---LRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~ 376 (802)
T KOG0733 302 QREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPA---LRRAGRFDREICLGVPSETAREEILRIICRG 376 (802)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCHH---HHCCCCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 88999999999998510025666689976998247897655877---7325655323530689668899999999862
No 78
>KOG0733 consensus
Probab=98.74 E-value=3.9e-08 Score=69.98 Aligned_cols=150 Identities=17% Similarity=0.245 Sum_probs=93.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH----------------HHHHHHHHHHHHHCCCC---CC--
Q ss_conf 8499987877786889999998627620135676444546----------------66666533433210037---61--
Q gi|254780567|r 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL----------------IDTRKPVLLEDIDLLDF---ND-- 123 (246)
Q Consensus 65 ~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~i~iddi~~~~~---~e-- 123 (246)
..+.+|||||||||-|+.|.+|+.++.++.-.-..+.+.. ......+.+|.++.+.- ++
T Consensus 546 sGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s 625 (802)
T KOG0733 546 SGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGS 625 (802)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCC
T ss_conf 72387579986188999998503047547623889998774237899999999862389838985111202765577775
Q ss_pred -------HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHH-HHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCH
Q ss_conf -------033545554311234215640354320022345667-885212224507889789999999986662897988
Q gi|254780567|r 124 -------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195 (246)
Q Consensus 124 -------e~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~-SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~ 195 (246)
..|+--++.+.+..+-.|++++..|.-++-.+ |+ -||-- ..-+..|+.+.|..||+.+....+..+++
T Consensus 626 ~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAi--LRPGRlDk--~LyV~lPn~~eR~~ILK~~tkn~k~pl~~ 701 (802)
T KOG0733 626 SVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAI--LRPGRLDK--LLYVGLPNAEERVAILKTITKNTKPPLSS 701 (802)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHH--CCCCCCCC--EEEECCCCHHHHHHHHHHHHCCCCCCCCC
T ss_conf 058999999998731621114259995068976555655--18775574--24506998788999999985357998875
Q ss_pred HH-HHHHHHCCC---CCHHHHHHHHHH
Q ss_conf 99-999994066---798999999999
Q gi|254780567|r 196 KL-AAYIVQRME---RSLVFAEKLVDK 218 (246)
Q Consensus 196 ~v-~~yl~~r~~---Rs~~~l~~~l~~ 218 (246)
+| ++-|+..-. -+-.++..++..
T Consensus 702 dVdl~eia~~~~c~gftGADLaaLvre 728 (802)
T KOG0733 702 DVDLDEIARNTKCEGFTGADLAALVRE 728 (802)
T ss_pred CCCHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 458999851232268753659999999
No 79
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.74 E-value=3.3e-08 Score=70.36 Aligned_cols=111 Identities=18% Similarity=0.274 Sum_probs=62.1
Q ss_pred HHHHHHHHHHC-CCCCEEEEECCCCCCHHHHHHHHHHHH---CCCCHHHHHHHH-------------------HHHHHHH
Q ss_conf 99999985101-678849998787778688999999862---762013567644-------------------4546666
Q gi|254780567|r 51 QAVRLIDSWPS-WPSRVVILVGPSGSGKSCLANIWSDKS---RSTRFSNIAKSL-------------------DSILIDT 107 (246)
Q Consensus 51 ~A~~~i~~~~~-~~~~~l~i~G~~GsGKTHLl~a~~~~~---~~~~~~~~~~~~-------------------~~~~~~~ 107 (246)
..+.++..+.. .+.+.++||||+|+|||+|+++++++. ...++....... .......
T Consensus 5 ~~~~~l~~~~~~~~~~~ill~GppGtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (151)
T cd00009 5 EAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAK 84 (151)
T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999981879980899899998865999999997121379827854777046777757605778898999999769
Q ss_pred HHHHHHHHHHCCCC-CCHHHHHHHHHHHC-----CCCCEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 66533433210037-61033545554311-----2342156403543200223456678852
Q gi|254780567|r 108 RKPVLLEDIDLLDF-NDTQLFHIINSIHQ-----YDSSLLMTARTFPVSWGVCLPDLCSRLK 163 (246)
Q Consensus 108 ~~~i~iddi~~~~~-~ee~lf~l~n~~~~-----~~~~iilts~~~p~~~~~~l~DL~SRl~ 163 (246)
...+++|+++.... .+..+...++.... .+..++++++.++. .....++.+|+.
T Consensus 85 ~~vl~iDEi~~l~~~~~~~~~~~l~~~~~~~~~~~~~~vI~~tn~~~~--~~~~~~~~~R~~ 144 (151)
T cd00009 85 PGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLL--GDLDRALYDRLD 144 (151)
T ss_pred CCEEEEECHHHCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCC--CCHHHHHHCCCC
T ss_conf 986982016655999999999999871575406788899995289988--683776425598
No 80
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.70 E-value=6.5e-07 Score=62.41 Aligned_cols=173 Identities=18% Similarity=0.236 Sum_probs=105.6
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH-----------------HHHH-------HHHHHHHHHH
Q ss_conf 167884999878777868899999986276201356764445-----------------4666-------6665334332
Q gi|254780567|r 61 SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS-----------------ILID-------TRKPVLLEDI 116 (246)
Q Consensus 61 ~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~-----------------~~~~-------~~~~i~iddi 116 (246)
+..+..+.++||||+|||.|++++|...+..|....-....+ -.+. ....+++|.+
T Consensus 346 ~~kg~IlclvGpPGvGKTSl~~sIA~al~r~f~rislGGv~DeaeirGHrrTYvgampGrii~~l~~a~~~nPv~llDEi 425 (784)
T PRK10787 346 KIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEI 425 (784)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEHHH
T ss_conf 67787799646998772469999999858986998068878888825643343443683899999974898856650035
Q ss_pred HCCCCC-----CHHHH-------------HHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHH
Q ss_conf 100376-----10335-------------455543112342156403543200223456678852122245078897899
Q gi|254780567|r 117 DLLDFN-----DTQLF-------------HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178 (246)
Q Consensus 117 ~~~~~~-----ee~lf-------------~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~ 178 (246)
+.+..+ .-+|+ |.++. --.-.+++|.++... ++ ..+-|.-|+. +++|..-..+++
T Consensus 426 DK~~~~~~Gdp~salLEvLDpeQN~~F~Dhyl~~-~~DlS~v~Fi~TaN~--~~-ip~pLlDRmE---~i~~~gYt~~eK 498 (784)
T PRK10787 426 DKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEV-DYDLSDVMFVATSNS--MN-IPAPLLDRME---VIRLSGYTEDEK 498 (784)
T ss_pred HHHCCCCCCCHHHHHHHHCCHHHCCCCCCCEEEC-CCCHHHEEEEEECCC--CC-CCHHHHHHEE---EEEECCCCHHHH
T ss_conf 5522455899889999845976556400032204-645222589973276--77-8767763121---554116767889
Q ss_pred HHHHHHHHH----------HCCCCCCHHHHHHHHHCCCCC--HHHHHHHHHHHHHHH----HHHC--C--CCCHHHHHHH
Q ss_conf 999999866----------628979889999999406679--899999999999999----9847--7--8788999999
Q gi|254780567|r 179 EKVIVKMFA----------DRQIFIDKKLAAYIVQRMERS--LVFAEKLVDKMDNLA----LSRG--M--GITRSLAAEV 238 (246)
Q Consensus 179 ~~il~k~~~----------~r~i~l~~~v~~yl~~r~~Rs--~~~l~~~l~~Ld~~s----l~~k--r--~ITi~lvk~v 238 (246)
..|-+++.- ..++.++++++.+|++++.|. +|.+...+..+.+.+ +..+ + .||...+.+.
T Consensus 499 ~~Ia~~~l~p~~~~~~gl~~~~~~~~~~~~~~ii~~ytrEaGvR~ler~i~~i~rk~~~~~~~~~~~~~~~i~~~~l~~~ 578 (784)
T PRK10787 499 LNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDY 578 (784)
T ss_pred HHHHHHHCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHHHHH
T ss_conf 99999745399999828996567439999999875336544425168899999999999997078878558889999998
Q ss_pred HH
Q ss_conf 98
Q gi|254780567|r 239 LK 240 (246)
Q Consensus 239 L~ 240 (246)
|.
T Consensus 579 lg 580 (784)
T PRK10787 579 LG 580 (784)
T ss_pred HC
T ss_conf 29
No 81
>KOG1969 consensus
Probab=98.68 E-value=3.5e-07 Score=64.09 Aligned_cols=182 Identities=13% Similarity=0.222 Sum_probs=113.7
Q ss_pred CCHHHHHHHHHHHHC---------C----------------------CCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHH
Q ss_conf 618999999985101---------6----------------------788499987877786889999998627620135
Q gi|254780567|r 47 SAIEQAVRLIDSWPS---------W----------------------PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN 95 (246)
Q Consensus 47 ~~N~~A~~~i~~~~~---------~----------------------~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~ 95 (246)
..|+.+..|++.|.- | +.+.+.|+||+|.|||.|++++|++++-..+..
T Consensus 278 ~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLAHViAkqaGYsVvEI 357 (877)
T KOG1969 278 KTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEI 357 (877)
T ss_pred HHHHHHHHHHHHHCHHHHCCHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEE
T ss_conf 68799999998615786401475543354664345563246866798400687536887872479999998628548873
Q ss_pred HHHH--HHH-------------H---HHHHHHHHHHHHHHCCCC-CCHHHHHHHHH--HHCCC-----------------
Q ss_conf 6764--445-------------4---666666533433210037-61033545554--31123-----------------
Q gi|254780567|r 96 IAKS--LDS-------------I---LIDTRKPVLLEDIDLLDF-NDTQLFHIINS--IHQYD----------------- 137 (246)
Q Consensus 96 ~~~~--~~~-------------~---~~~~~~~i~iddi~~~~~-~ee~lf~l~n~--~~~~~----------------- 137 (246)
.+.. ... . .......+++|.|++-.. --..+.++++. -...|
T Consensus 358 NASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L 437 (877)
T KOG1969 358 NASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLL 437 (877)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHCCCCC
T ss_conf 25554347889999999886411225688863599842468728999999999974161421686632034555304654
Q ss_pred -CCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf -4215640354320022345667885212224507889789999999986662897988999999940667989999999
Q gi|254780567|r 138 -SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216 (246)
Q Consensus 138 -~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l 216 (246)
++||..|+.- .-|-|+--=..+-++.+.+|.+..+..-|+..|...+|.++..++.-|++-...| ++..+
T Consensus 438 ~RPIICICNdL------YaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~~D---IRsCI 508 (877)
T KOG1969 438 TRPIICICNDL------YAPALRPLRPFAEIIAFVPPSQSRLVERLNEICHRENMRADSKALNALCELTQND---IRSCI 508 (877)
T ss_pred CCCEEEEECCC------CCHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCH---HHHHH
T ss_conf 58778986475------5533331021048999569976689999999976415778878999999986130---98888
Q ss_pred HHHHHHHHHHCCC---CCHHHHHH
Q ss_conf 9999999984778---78899999
Q gi|254780567|r 217 DKMDNLALSRGMG---ITRSLAAE 237 (246)
Q Consensus 217 ~~Ld~~sl~~kr~---ITi~lvk~ 237 (246)
++|.-++...+|. |.+.++-+
T Consensus 509 NtLQfLa~~~~r~ds~i~~~~i~a 532 (877)
T KOG1969 509 NTLQFLASNVDRRDSSISVKLICA 532 (877)
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 899999970444344311221133
No 82
>KOG0740 consensus
Probab=98.66 E-value=4.6e-07 Score=63.33 Aligned_cols=175 Identities=21% Similarity=0.205 Sum_probs=108.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH----------------HHHHHHHHHHHHHCCCCC----
Q ss_conf 788499987877786889999998627620135676444546----------------666665334332100376----
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL----------------IDTRKPVLLEDIDLLDFN---- 122 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~i~iddi~~~~~~---- 122 (246)
|.+.+.++||+|+|||-|++++|.+.++.++.-.+.++.... .....++.+|+++.+-..
T Consensus 185 p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~ 264 (428)
T KOG0740 185 PVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDN 264 (428)
T ss_pred CCCHHHEECCCCCCHHHHHHHHHHHHCCEEEECCHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCCC
T ss_conf 53111200589884479999998620665763068886532467077899999999871397089840256788636875
Q ss_pred C---------HHHHHHHHHHHCCCCCEEE-EECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 1---------0335455543112342156-40354320022345667885212224507889789999999986662897
Q gi|254780567|r 123 D---------TQLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 (246)
Q Consensus 123 e---------e~lf~l~n~~~~~~~~iil-ts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~ 192 (246)
+ |.|....-.+.....++++ .++.-|-+++-. -++ ||.. ++-|+.||++.+..++++...+.+-.
T Consensus 265 e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea--~~R-rf~k--r~yiplPd~etr~~~~~~ll~~~~~~ 339 (428)
T KOG0740 265 EHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEA--ARR-RFVK--RLYIPLPDYETRSLLWKQLLKEQPNG 339 (428)
T ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHH--HHH-HHCC--EEEECCCCHHHHHHHHHHHHHHCCCC
T ss_conf 454455565577765404457888707998158883677888--888-7103--15535988789999999999768787
Q ss_pred CCHHHHHHHHHCCC-CCHHHHHHHHHH--------------HHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 98899999994066-798999999999--------------999999847787889999999867
Q gi|254780567|r 193 IDKKLAAYIVQRME-RSLVFAEKLVDK--------------MDNLALSRGMGITRSLAAEVLKET 242 (246)
Q Consensus 193 l~~~v~~yl~~r~~-Rs~~~l~~~l~~--------------Ld~~sl~~kr~ITi~lvk~vL~~~ 242 (246)
+.+.-+..|++..+ .+-+++-.++.. +.......-|+|+++-.+++++..
T Consensus 340 l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~~~~~~~~~~~~r~i~~~df~~a~~~i 404 (428)
T KOG0740 340 LSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGTTDLEFIDADKIRPITYPDFKNAFKNI 404 (428)
T ss_pred CCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHCCCHHHHHHCCCCCCCCCCCCHHHHHHHHH
T ss_conf 41778999998861756221889987762384544012011442230025898862689988740
No 83
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.64 E-value=1.1e-06 Score=61.11 Aligned_cols=198 Identities=14% Similarity=0.117 Sum_probs=115.9
Q ss_pred CCCCCCCCEEECCCHHH--HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC-----CCHHHHHHHHH--HH--
Q ss_conf 76688454165361899--999998510167884999878777868899999986276-----20135676444--54--
Q gi|254780567|r 35 CLGISRDDLLVHSAIEQ--AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLD--SI-- 103 (246)
Q Consensus 35 ~~~~~~dnFiv~~~N~~--A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~-----~~~~~~~~~~~--~~-- 103 (246)
...++|++.+ |.+-.+ ++..+..... ..-|+.|.|++|+||++|++++-+.+.. +.+.+...... ..
T Consensus 319 ~~~~~f~~l~-g~s~~~~~~~~~a~~~a~-~~~pVLI~GE~GtGKe~lAraIH~~S~r~~~pfv~vnC~ai~~~~~e~el 396 (639)
T PRK11388 319 KVSHTFDHMP-QDSPQMRRLIHFGRQAAK-SSFPILLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLLPDEALAEEF 396 (639)
T ss_pred CCCCCHHHCC-CCCHHHHHHHHHHHHHHC-CCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHH
T ss_conf 7888855446-799999999999999968-89968988989810999999999557778998189878989846789987
Q ss_pred ----------------HHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH----------CCCCCEEEEECCCCCCH---HH
Q ss_conf ----------------6666665334332100376-103354555431----------12342156403543200---22
Q gi|254780567|r 104 ----------------LIDTRKPVLLEDIDLLDFN-DTQLFHIINSIH----------QYDSSLLMTARTFPVSW---GV 153 (246)
Q Consensus 104 ----------------~~~~~~~i~iddi~~~~~~-ee~lf~l~n~~~----------~~~~~iilts~~~p~~~---~~ 153 (246)
....-..+++|+++.++-. |..|+.++..-. .-..+++.+++.+...+ ..
T Consensus 397 fG~~~~~~~~g~~g~~e~A~gGTL~LdeI~~lp~~~Q~~LlrvL~~~~~~r~g~~~~~~vdvRiiaat~~~l~~~v~~g~ 476 (639)
T PRK11388 397 LGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSVELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNR 476 (639)
T ss_pred CCCCCCCCCCCCCCHHHCCCCCEEEECCHHHCCHHHHHHHHHHHHCCCEEECCCCCEEEEEEEEEEECCHHHHHHHHCCC
T ss_conf 38776764346686244036982884672649999999999998659378569994666427999736450899987498
Q ss_pred HHHHHHHHHHHCCEEEECCCCH--HHHHH----HHHHHHH--HCCCCCCHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHH
Q ss_conf 3456678852122245078897--89999----9999866--62897988999999940-66798999999999999999
Q gi|254780567|r 154 CLPDLCSRLKAATVVKISLPDD--DFLEK----VIVKMFA--DRQIFIDKKLAAYIVQR-MERSLVFAEKLVDKMDNLAL 224 (246)
Q Consensus 154 ~l~DL~SRl~~g~~~~I~~pdd--e~~~~----il~k~~~--~r~i~l~~~v~~yl~~r-~~Rs~~~l~~~l~~Ld~~sl 224 (246)
+.+||--||+. ..+.|+|+-+ +.+.. ++..... .+.+.+++++...|..+ ++.+++++.+++++. ...
T Consensus 477 fr~dLyyrl~~-~~i~lPpLReR~~Di~~L~~~~l~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~nvl~~a--~~~ 553 (639)
T PRK11388 477 FSRQLYYALHA-FEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELRSVIENL--ALS 553 (639)
T ss_pred CHHHHHHHHHH-HHCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHH--HHH
T ss_conf 54999987674-410573323253439999999999999971999998999999997289997999999999999--983
Q ss_pred HHCCCCCHHHHHH
Q ss_conf 8477878899999
Q gi|254780567|r 225 SRGMGITRSLAAE 237 (246)
Q Consensus 225 ~~kr~ITi~lvk~ 237 (246)
.....|+...+-.
T Consensus 554 ~~~~~I~~~~Lp~ 566 (639)
T PRK11388 554 SDNGRIRLSDLPE 566 (639)
T ss_pred CCCCCCCHHHCCH
T ss_conf 8998426797808
No 84
>KOG0730 consensus
Probab=98.63 E-value=1.6e-06 Score=60.04 Aligned_cols=139 Identities=18% Similarity=0.266 Sum_probs=100.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHH------------HHHHH----HH-HHHHHHHHHHCCCCCC--
Q ss_conf 78849998787778688999999862762013567644------------45466----66-6653343321003761--
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL------------DSILI----DT-RKPVLLEDIDLLDFND-- 123 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~------------~~~~~----~~-~~~i~iddi~~~~~~e-- 123 (246)
+...+.+|||+|+|||.|++++++++++..+....... -..+. .. ...+.+|+++.+....
T Consensus 217 ~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~ 296 (693)
T KOG0730 217 PPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREG 296 (693)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEECCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEHHHHHHHCCCCCC
T ss_conf 99874443899998189999999973722574062899985246317789999999866599807758767623776433
Q ss_pred ---------HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf ---------03354555431123421564035432002234566788521222450788978999999998666289798
Q gi|254780567|r 124 ---------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194 (246)
Q Consensus 124 ---------e~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~ 194 (246)
-+++-+.......++.+++.+...|..++..+-+ -| .---++|.-|+...|..|++.++...+.. +
T Consensus 297 ~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alRR--gR--fd~ev~IgiP~~~~RldIl~~l~k~~~~~-~ 371 (693)
T KOG0730 297 ADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALRR--GR--FDREVEIGIPGSDGRLDILRVLTKKMNLL-S 371 (693)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHC--CC--CCCEEEECCCCCHHHHHHHHHHHHHCCCC-C
T ss_conf 3248889999999998527676746999715885556856524--78--85315744898335889999998616887-2
Q ss_pred HHHHHHHHHCCC
Q ss_conf 899999994066
Q gi|254780567|r 195 KKLAAYIVQRME 206 (246)
Q Consensus 195 ~~v~~yl~~r~~ 206 (246)
+..+..++...-
T Consensus 372 ~~~l~~iA~~th 383 (693)
T KOG0730 372 DVDLEDIAVSTH 383 (693)
T ss_pred HHHHHHHHHHCC
T ss_conf 556899998734
No 85
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.62 E-value=7.6e-07 Score=62.00 Aligned_cols=199 Identities=13% Similarity=0.152 Sum_probs=119.4
Q ss_pred CCCCCCCCCCCCCCCEEECCCHH--HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC-----CCHHHHHH--
Q ss_conf 15588877668845416536189--9999998510167884999878777868899999986276-----20135676--
Q gi|254780567|r 28 LFFSFPRCLGISRDDLLVHSAIE--QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAK-- 98 (246)
Q Consensus 28 l~l~~~~~~~~~~dnFiv~~~N~--~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~-----~~~~~~~~-- 98 (246)
..-.+.....++|++.+ |.|-. .++..++.+.. ...|+.|+|++|+||+.+++++-+.+.. +.+.+...
T Consensus 191 ~~~~~~~~~~~~F~~ii-g~S~~m~~v~~~a~r~A~-~d~pVLI~GEsGTGKellAraIH~~S~R~~~pFv~vnC~alp~ 268 (513)
T PRK10820 191 QLQNLSVQDVSAFSQIV-AVSPKMKHVVEQARKLAM-LSAPLLITGDTGTGKDLFAYACHLASPRAKKPYLALNCASIPE 268 (513)
T ss_pred HHHHHHCCCCCCHHHHE-ECCHHHHHHHHHHHHHHC-CCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCH
T ss_conf 99974225416877751-089999999999999859-8998899898982499999999966887899826888998996
Q ss_pred HHHHHHH--------------HHHHHHHHHHHHCCCC-CCHHHHHHHHHHH----------CCCCCEEEEECCCCCCH--
Q ss_conf 4445466--------------6666533433210037-6103354555431----------12342156403543200--
Q gi|254780567|r 99 SLDSILI--------------DTRKPVLLEDIDLLDF-NDTQLFHIINSIH----------QYDSSLLMTARTFPVSW-- 151 (246)
Q Consensus 99 ~~~~~~~--------------~~~~~i~iddi~~~~~-~ee~lf~l~n~~~----------~~~~~iilts~~~p~~~-- 151 (246)
......+ ..-..+.+|++..++- -|..|+.++..-. .-+.+++.+++..+.++
T Consensus 269 ~l~eseLFG~a~~~~~G~fe~A~gGTLfLdEI~~l~~~~Q~kLLr~Lq~~~~~rvG~~~~~~~dvRiIaaT~~dL~~lv~ 348 (513)
T PRK10820 269 DAVESELFGHAPEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQ 348 (513)
T ss_pred HHHHHHHCCCCCCCCCCCEEECCCCEEEEECHHHCCHHHHHHHHHHHHCCEEEECCCCCEEEEEEEEEECCCHHHHHHHH
T ss_conf 78999863876668897557858988999783659999999999998689799659985356778999626530999987
Q ss_pred -HHHHHHHHHHHHHCCEEEECCCCH--HHHH----HHHHHHHHHCCC---CCCHHHHHHHHHC-CCCCHHHHHHHHHHHH
Q ss_conf -223456678852122245078897--8999----999998666289---7988999999940-6679899999999999
Q gi|254780567|r 152 -GVCLPDLCSRLKAATVVKISLPDD--DFLE----KVIVKMFADRQI---FIDKKLAAYIVQR-MERSLVFAEKLVDKMD 220 (246)
Q Consensus 152 -~~~l~DL~SRl~~g~~~~I~~pdd--e~~~----~il~k~~~~r~i---~l~~~v~~yl~~r-~~Rs~~~l~~~l~~Ld 220 (246)
..+.+||--||+ ++.+.|+|+-+ +... ..+.+++...|. .+++++.++|..+ ++.+++.+.+++.+.
T Consensus 349 ~g~FReDLyyRL~-v~~I~lPpLReR~eDI~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~WPGNVREL~n~iera- 426 (513)
T PRK10820 349 KGLFREDLYYRLN-VLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLSADLSTVLTRYGWPGNVRQLKNAIYRA- 426 (513)
T ss_pred CCCCCHHHHHHHH-CCCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHH-
T ss_conf 2985088999861-67255888344655699999999999999759998984799999997089997999999999999-
Q ss_pred HHHHHHCCCCC
Q ss_conf 99998477878
Q gi|254780567|r 221 NLALSRGMGIT 231 (246)
Q Consensus 221 ~~sl~~kr~IT 231 (246)
..+..+..|+
T Consensus 427 -~~~~~g~~i~ 436 (513)
T PRK10820 427 -LTQLEGYELR 436 (513)
T ss_pred -HHHCCCCCCC
T ss_conf -9957998534
No 86
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.59 E-value=1.5e-06 Score=60.27 Aligned_cols=176 Identities=15% Similarity=0.180 Sum_probs=106.9
Q ss_pred CEEECCCHHH--HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC-----CCHHHHHHHH--HHHH--------
Q ss_conf 4165361899--999998510167884999878777868899999986276-----2013567644--4546--------
Q gi|254780567|r 42 DLLVHSAIEQ--AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSL--DSIL-------- 104 (246)
Q Consensus 42 nFiv~~~N~~--A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~-----~~~~~~~~~~--~~~~-------- 104 (246)
|=+||.|-.+ .++.+..+.. ...|++|.|++|+||+.+++++-..+.. +.+.+..... ....
T Consensus 6 ~~liG~S~~m~~v~~~~~~~A~-~~~pVLI~GE~GtGK~~~Ar~IH~~S~r~~~pfi~v~C~~l~~~~~e~~LFG~~~g~ 84 (325)
T PRK11608 6 DNLLGEANSFLEVLEQVSHLAP-LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGA 84 (325)
T ss_pred CCCEECCHHHHHHHHHHHHHHC-CCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCC
T ss_conf 9985899999999999999968-899989889898379999999996588679997788779899778899872775567
Q ss_pred -------------HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH----------CCCCCEEEEECCCCCCH---HHHHHH
Q ss_conf -------------666665334332100376-103354555431----------12342156403543200---223456
Q gi|254780567|r 105 -------------IDTRKPVLLEDIDLLDFN-DTQLFHIINSIH----------QYDSSLLMTARTFPVSW---GVCLPD 157 (246)
Q Consensus 105 -------------~~~~~~i~iddi~~~~~~-ee~lf~l~n~~~----------~~~~~iilts~~~p~~~---~~~l~D 157 (246)
...-..+.+|+++.++-. |+.|..++..-. ..+.+++.+++..+.++ ..+.+|
T Consensus 85 ~~~~~~~~~g~le~a~gGTL~L~eI~~l~~~~Q~~Ll~~l~~~~~~r~g~~~~~~~~~RiIa~t~~~l~~lv~~g~fr~d 164 (325)
T PRK11608 85 FTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRAD 164 (325)
T ss_pred CCCCCCCCCCHHHCCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEECCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHH
T ss_conf 67753246873435689869973745479999999999986490885799876656468871332208999983956799
Q ss_pred HHHHHHHCCEEEECCCCH--HHHHHH----HHHHHHHCCCC----CCHHHHHHHHH-CCCCCHHHHHHHHHHH
Q ss_conf 678852122245078897--899999----99986662897----98899999994-0667989999999999
Q gi|254780567|r 158 LCSRLKAATVVKISLPDD--DFLEKV----IVKMFADRQIF----IDKKLAAYIVQ-RMERSLVFAEKLVDKM 219 (246)
Q Consensus 158 L~SRl~~g~~~~I~~pdd--e~~~~i----l~k~~~~r~i~----l~~~v~~yl~~-r~~Rs~~~l~~~l~~L 219 (246)
|-.||+ +..++|+|+-+ +....+ +...+...+.. +++++++.|.. +++.+++.+.+++++.
T Consensus 165 Ly~rL~-~~~I~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrEL~n~iera 236 (325)
T PRK11608 165 LLDRLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGNIRELKNVVERS 236 (325)
T ss_pred HHHHHH-HHHCCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 985653-011158684547101999999999999998299988888999999996199996599999999999
No 87
>pfam03969 AFG1_ATPase AFG1-like ATPase. This family of proteins contains a P-loop motif and are predicted to be ATPases.
Probab=98.59 E-value=1.1e-07 Score=67.25 Aligned_cols=114 Identities=20% Similarity=0.253 Sum_probs=66.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCC------CCHHH---HHHHH-------------HHHHHHHHHHHHHHHHHCCC
Q ss_conf 7884999878777868899999986276------20135---67644-------------45466666653343321003
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDKSRS------TRFSN---IAKSL-------------DSILIDTRKPVLLEDIDLLD 120 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~~~~------~~~~~---~~~~~-------------~~~~~~~~~~i~iddi~~~~ 120 (246)
|.+.+||||+.|+|||+|+..+.+.... ++... ..... ........+++|+|.++..+
T Consensus 60 ~~kGlYl~G~VGrGKTmLMDlFy~~lp~~~K~R~HFh~FM~~vH~~l~~~~~~~dpl~~va~~l~~~~~lLCfDEFqV~D 139 (361)
T pfam03969 60 PVRGLYLWGGVGRGKTHLMDSFFESLPGERKRRTHFHRFMFRVHDELTTLQGGDDPLPIAADRFANEARLLCFDEFEVDD 139 (361)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEEEEEECC
T ss_conf 99868988998886999999999867753444566789999999999997667763899999997258779976356167
Q ss_pred CCCH-HHHHHHHHHHCCCCCEEEEECCCCCCHHH-------HHHHHHHHHHHCCEEEECCCCHH
Q ss_conf 7610-33545554311234215640354320022-------34566788521222450788978
Q gi|254780567|r 121 FNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGV-------CLPDLCSRLKAATVVKISLPDDD 176 (246)
Q Consensus 121 ~~ee-~lf~l~n~~~~~~~~iilts~~~p~~~~~-------~l~DL~SRl~~g~~~~I~~pdde 176 (246)
-... .|=-++..+...|..+|.||+.+|.++-- ++|-..---..+.++++..+.|-
T Consensus 140 IaDAMIL~rLf~~Lf~~gvvlV~TSN~~P~~LY~~GLqR~~FlPfI~ll~~~~~v~~l~~~~DY 203 (361)
T pfam03969 140 IGDAMILGRLFEALFARGVSLVATSNTAPEQLYRNGLNRQRFLPAIDLLESHFEVVRVDGPVDY 203 (361)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHHCEEEEECCCCCC
T ss_conf 8889999999999997797899808999899836874177889999999986789981598780
No 88
>KOG0738 consensus
Probab=98.59 E-value=4.8e-06 Score=57.09 Aligned_cols=164 Identities=24% Similarity=0.444 Sum_probs=100.2
Q ss_pred CCCCCCCCCEEECCCHHHHHHHHHHH---HCC----------CCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 77668845416536189999999851---016----------78849998787778688999999862762013567644
Q gi|254780567|r 34 RCLGISRDDLLVHSAIEQAVRLIDSW---PSW----------PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 (246)
Q Consensus 34 ~~~~~~~dnFiv~~~N~~A~~~i~~~---~~~----------~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~ 100 (246)
.+|+...+|-. .+..|..+++.. |-| |-+.+.++||||+|||-|+.|.+.+++..++.-....+
T Consensus 205 ~np~ikW~DIa---gl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstl 281 (491)
T KOG0738 205 RNPNIKWDDIA---GLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTL 281 (491)
T ss_pred CCCCCCHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEEECHHHH
T ss_conf 59986767631---649999999988754442488874244653000556799974789999998861672787402456
Q ss_pred ----------------HHHHHHHHHHHHHHHHHCCCCC-----C--------HHHHHHHHHH---HCCCC-CEEEEECCC
Q ss_conf ----------------4546666665334332100376-----1--------0335455543---11234-215640354
Q gi|254780567|r 101 ----------------DSILIDTRKPVLLEDIDLLDFN-----D--------TQLFHIINSI---HQYDS-SLLMTARTF 147 (246)
Q Consensus 101 ----------------~~~~~~~~~~i~iddi~~~~~~-----e--------e~lf~l~n~~---~~~~~-~iilts~~~ 147 (246)
......+...|.||.|+.+... | -+|+-..+.. .++.+ -.|++++..
T Consensus 282 tSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~ 361 (491)
T KOG0738 282 TSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNF 361 (491)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCC
T ss_conf 55532526999999999998748853533567788725798650367888888999986334444456516999843689
Q ss_pred CCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHCCCC
Q ss_conf 3200223456678852122245078897899999999866628979-88999999940667
Q gi|254780567|r 148 PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI-DKKLAAYIVQRMER 207 (246)
Q Consensus 148 p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l-~~~v~~yl~~r~~R 207 (246)
| |+ +.+-|+-||.- -+-|+.||.+.|..+|+.... ...+ ++--+++|+++++.
T Consensus 362 P--Wd-iDEAlrRRlEK--RIyIPLP~~~~R~~Li~~~l~--~~~~~~~~~~~~lae~~eG 415 (491)
T KOG0738 362 P--WD-IDEALRRRLEK--RIYIPLPDAEARSALIKILLR--SVELDDPVNLEDLAERSEG 415 (491)
T ss_pred C--CC-HHHHHHHHHHH--HEEEECCCHHHHHHHHHHHHC--CCCCCCCCCHHHHHHHHCC
T ss_conf 8--20-57999998763--033128787899999997623--5668887569999998568
No 89
>KOG0735 consensus
Probab=98.57 E-value=2.2e-06 Score=59.17 Aligned_cols=163 Identities=20% Similarity=0.260 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHCCCCC--------------EEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH-----------
Q ss_conf 89999999851016788--------------49998787778688999999862762013567644454-----------
Q gi|254780567|r 49 IEQAVRLIDSWPSWPSR--------------VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI----------- 103 (246)
Q Consensus 49 N~~A~~~i~~~~~~~~~--------------~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~~----------- 103 (246)
=..+..+++....||.+ .+.+|||||||||||+.+++..++-.+++-.-..+...
T Consensus 672 ~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~ 751 (952)
T KOG0735 672 LFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRD 751 (952)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCEEEEEECCHHHHHHHHCCCHHHHHH
T ss_conf 89999999999855410367886088666554588779998578888888853780599825889999874500788999
Q ss_pred -HHH----HHHHHHHHHHHCCCCC----C--------HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHH-HHHHC
Q ss_conf -666----6665334332100376----1--------0335455543112342156403543200223456678-85212
Q gi|254780567|r 104 -LID----TRKPVLLEDIDLLDFN----D--------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS-RLKAA 165 (246)
Q Consensus 104 -~~~----~~~~i~iddi~~~~~~----e--------e~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~S-Rl~~g 165 (246)
+.. ...++.+|.++-+.-. . ..|+--++...--.+-.+++++..|.-++-.+ ||+ ||--.
T Consensus 752 lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpAL--LRpGRlD~~ 829 (952)
T KOG0735 752 LFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPAL--LRPGRLDKL 829 (952)
T ss_pred HHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCHHH--CCCCCCCEE
T ss_conf 999865149748971210243766687777742999999987603633445389997337834367766--288765401
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHCCCCCCHH-HHHHHHHCCC-CCHHHHHHHHH
Q ss_conf 2245078897899999999866628979889-9999994066-79899999999
Q gi|254780567|r 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKK-LAAYIVQRME-RSLVFAEKLVD 217 (246)
Q Consensus 166 ~~~~I~~pdde~~~~il~k~~~~r~i~l~~~-v~~yl~~r~~-Rs~~~l~~~l~ 217 (246)
. .-+.|+...|..|++...+.. .++++ -++.++...+ -+..++..++.
T Consensus 830 v--~C~~P~~~eRl~il~~ls~s~--~~~~~vdl~~~a~~T~g~tgADlq~ll~ 879 (952)
T KOG0735 830 V--YCPLPDEPERLEILQVLSNSL--LKDTDVDLECLAQKTDGFTGADLQSLLY 879 (952)
T ss_pred E--ECCCCCCHHHHHHHHHHHHCC--CCCCCCCHHHHHHHCCCCCHHHHHHHHH
T ss_conf 5--679989289999999985345--7752101688765217873665998987
No 90
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.57 E-value=3.2e-06 Score=58.21 Aligned_cols=189 Identities=16% Similarity=0.183 Sum_probs=120.8
Q ss_pred HHHHHHHHH--HCCCCCEEEEECCCCCCHHHHHHHHHHHH----CC------CC-------HHH---HH----HH-----
Q ss_conf 999999851--01678849998787778688999999862----76------20-------135---67----64-----
Q gi|254780567|r 51 QAVRLIDSW--PSWPSRVVILVGPSGSGKSCLANIWSDKS----RS------TR-------FSN---IA----KS----- 99 (246)
Q Consensus 51 ~A~~~i~~~--~~~~~~~l~i~G~~GsGKTHLl~a~~~~~----~~------~~-------~~~---~~----~~----- 99 (246)
..+..++.- ..+.+..+||.|-||.|||--.+...+.- .. .+ +.. .+ ..
T Consensus 278 ~I~~Fie~~i~q~GtG~cLYISGVPGTGKTATV~eVIr~L~~~~~~~~lp~F~fVEINGMkLt~P~qaY~~L~e~Ltg~k 357 (650)
T PTZ00112 278 EIRTFLETGIKQGGTGQILYISGVPGTGKTATVYMVIKELQNKKLKGQLPWFNLFEINGVNLVHPNAAYRVFYKKLFNKK 357 (650)
T ss_pred HHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHHHHHCCC
T ss_conf 99999986411688665699978999980036999999999999708999815999736377987889999999984898
Q ss_pred ----------HHHHH--HHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHH-HHHHHHHHHHHC
Q ss_conf ----------44546--666665334332100-3761033545554311234215640354320022-345667885212
Q gi|254780567|r 100 ----------LDSIL--IDTRKPVLLEDIDLL-DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGV-CLPDLCSRLKAA 165 (246)
Q Consensus 100 ----------~~~~~--~~~~~~i~iddi~~~-~~~ee~lf~l~n~~~~~~~~iilts~~~p~~~~~-~l~DL~SRl~~g 165 (246)
+...+ ......+++|.++.+ ..+|..++++|+.-...+.++++.+-..-.++.- ..++..|||..
T Consensus 358 ~~~~~~A~~lL~k~F~~~r~p~VlLvDELD~LvTkkQ~VlYNLFdWPT~~~SkLIVIaIANTMDLPERL~~RVsSRLGl- 436 (650)
T PTZ00112 358 PPNALNSYKELDKLFNNNRTPSILIVDEADYIVTKTQKVLFTLFDWPTKKNSKLILIIISNTMDLPYKMKPSCRSRLAF- 436 (650)
T ss_pred CCCHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHCCCCEEEECCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHCCC-
T ss_conf 8867899999999826899718999715777763677457773668898887079999850678606566665552288-
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH--HCCCCCHHHHHHHHHHH
Q ss_conf 224507889789999999986662897988999999940667989999999999999998--47787889999999867
Q gi|254780567|r 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS--RGMGITRSLAAEVLKET 242 (246)
Q Consensus 166 ~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~--~kr~ITi~lvk~vL~~~ 242 (246)
..+...|-+.+.+..|+......-+ .+++++++|.++++.-=-++++.+++-. +.|++ .+.+|++.-++++-+..
T Consensus 437 tRltF~PYt~~QL~eII~sRL~~~~-~f~~dAIQl~ARKVAavSGDARRALdIC-RRAvE~~~~~ki~~~~i~~a~n~~ 513 (650)
T PTZ00112 437 GRLVFSPYKYQQIEKVIKERLENCE-IIDHTALQLCARRVTNYSGDMRKALQIC-KLAFENKNGGKITPRDMTRASNMV 513 (650)
T ss_pred CEECCCCCCHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHCCCCEEEHHHHHHHHHHH
T ss_conf 5004399899999999999862677-7887899999888875031489999999-999973568734248999998888
No 91
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.56 E-value=2.9e-06 Score=58.40 Aligned_cols=186 Identities=15% Similarity=0.193 Sum_probs=112.6
Q ss_pred EECCCHH--HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC-----CCHHHHHH--HHHHH-----------
Q ss_conf 6536189--9999998510167884999878777868899999986276-----20135676--44454-----------
Q gi|254780567|r 44 LVHSAIE--QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAK--SLDSI----------- 103 (246)
Q Consensus 44 iv~~~N~--~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~-----~~~~~~~~--~~~~~----------- 103 (246)
++|.|-. ..+..+..... ...+++|+|++|+||+.+++++-..+.. +.+.+... .....
T Consensus 140 liG~S~~m~~v~~~i~~~a~-~~~pVLI~GE~GTGK~~~Ar~IH~~S~r~~~pfi~vnC~~~~~~~~e~eLFG~~~gaf~ 218 (469)
T PRK10923 140 IIGEAPAMQDVFRIIGRLSR-SSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFT 218 (469)
T ss_pred CEECCHHHHHHHHHHHHHHC-CCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCC
T ss_conf 54689999999999999858-89978998989826999999999748877999578767889977899997087667878
Q ss_pred ----------HHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH----------CCCCCEEEEECCCCCCH---HHHHHHHH
Q ss_conf ----------6666665334332100376-103354555431----------12342156403543200---22345667
Q gi|254780567|r 104 ----------LIDTRKPVLLEDIDLLDFN-DTQLFHIINSIH----------QYDSSLLMTARTFPVSW---GVCLPDLC 159 (246)
Q Consensus 104 ----------~~~~~~~i~iddi~~~~~~-ee~lf~l~n~~~----------~~~~~iilts~~~p~~~---~~~l~DL~ 159 (246)
.......+++|+++.++-. |..|..++..-. ..+.+++.+++..+.+. ..+.+||-
T Consensus 219 ga~~~~~g~~e~a~~GTLfLdeI~~L~~~~Q~kLl~~L~~~~~~~~g~~~~~~~d~RiIaat~~~L~~~v~~g~Fr~dLy 298 (469)
T PRK10923 219 GANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 (469)
T ss_pred CCCCCCCCCHHHCCCCCEEHHHHHHCCHHHHHHHHHHHHCCCEEECCCCCEEEECCEEEEECCCCHHHHHHHCCHHHHHH
T ss_conf 86424587366438992656636648999999999998559378579985122143799707879999866081779999
Q ss_pred HHHHHCCEEEECCCCH--HHHHH----HHHHHHHHCCCC---CCHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 8852122245078897--89999----999986662897---98899999994-06679899999999999999984778
Q gi|254780567|r 160 SRLKAATVVKISLPDD--DFLEK----VIVKMFADRQIF---IDKKLAAYIVQ-RMERSLVFAEKLVDKMDNLALSRGMG 229 (246)
Q Consensus 160 SRl~~g~~~~I~~pdd--e~~~~----il~k~~~~r~i~---l~~~v~~yl~~-r~~Rs~~~l~~~l~~Ld~~sl~~kr~ 229 (246)
-||+. ..+.|+|+-+ +.+.. .+...+...+.. +++++++.|.. +++.+++++.++++++-- +..++.
T Consensus 299 yrL~~-~~I~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrEL~n~ier~~~--~~~~~~ 375 (469)
T PRK10923 299 HRLNV-IRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTV--MAAGQE 375 (469)
T ss_pred HHHHH-HCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHH--HCCCCC
T ss_conf 86442-401584654465349999999999999985999787899999999749999879999999999998--579982
Q ss_pred CCHH
Q ss_conf 7889
Q gi|254780567|r 230 ITRS 233 (246)
Q Consensus 230 ITi~ 233 (246)
|+..
T Consensus 376 i~~~ 379 (469)
T PRK10923 376 VLIQ 379 (469)
T ss_pred CCHH
T ss_conf 5477
No 92
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=1.4e-06 Score=60.34 Aligned_cols=185 Identities=20% Similarity=0.222 Sum_probs=103.6
Q ss_pred CEEECCCHHHHHHHH-HHHHCCCC-CEEEEECCCCCCHHHHHHHHHHHHCCC-----C----H----H---H--HH----
Q ss_conf 416536189999999-85101678-849998787778688999999862762-----0----1----3---5--67----
Q gi|254780567|r 42 DLLVHSAIEQAVRLI-DSWPSWPS-RVVILVGPSGSGKSCLANIWSDKSRST-----R----F----S---N--IA---- 97 (246)
Q Consensus 42 nFiv~~~N~~A~~~i-~~~~~~~~-~~l~i~G~~GsGKTHLl~a~~~~~~~~-----~----~----~---~--~~---- 97 (246)
+-++|.. .+.+.+ ..+..+-- +...++||.|+|||.++..+++..-+. . . . + ..
T Consensus 23 ~~liGq~--~~~~~L~~a~~~gRl~HA~Lf~GP~GiGKaTlA~~~A~~Ll~~~~~~~~~~~~~~pd~~~~~~r~i~~g~h 100 (352)
T PRK09112 23 NRLFGHE--EARAFLAQAYREGRLHHALLFEGPEGIGKATLAFHLANHILSHPDPNEAPETLADPDPASPLWRQIAQGAH 100 (352)
T ss_pred HHHCCHH--HHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCC
T ss_conf 4627869--99999999998499652465358998089999999999986699866686556788878778999974899
Q ss_pred HHH-------HH-----------H-------------HHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 644-------45-----------4-------------6666665334332100376-10335455543112342156403
Q gi|254780567|r 98 KSL-------DS-----------I-------------LIDTRKPVLLEDIDLLDFN-DTQLFHIINSIHQYDSSLLMTAR 145 (246)
Q Consensus 98 ~~~-------~~-----------~-------------~~~~~~~i~iddi~~~~~~-ee~lf~l~n~~~~~~~~iilts~ 145 (246)
... +. + ....++++++|..+.++.+ ..+|+-++.+=-.+ ...++.+
T Consensus 101 pdl~~i~r~~d~k~~~~~~~I~vd~iR~l~~~~~~~~~~~~~kv~Iid~ad~m~~~aaNALLK~LEEPp~~-~~fiLit- 178 (352)
T PRK09112 101 PNLLHLTRPFDEKTGKFKTAITVDEIRRVTHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPAR-ALFILIS- 178 (352)
T ss_pred CCEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCC-EEEEEEE-
T ss_conf 99565534322021454335777999999998454886688069998187874699999999985348987-4899886-
Q ss_pred CCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHH--HHH--
Q ss_conf 5432002234566788521222450788978999999998666289798899999994066798999999999--999--
Q gi|254780567|r 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK--MDN-- 221 (246)
Q Consensus 146 ~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~--Ld~-- 221 (246)
..|.. .++-++||+. .+.+.+++++.+...|.......++. +++.++.++...+.|++.+..+++. ++-
T Consensus 179 ~~~~~---ll~TI~SRCq---~~~f~pL~~~di~~~L~~i~~~~~~~-~~~~~~~l~~~a~GS~~~Al~L~~~~gl~i~~ 251 (352)
T PRK09112 179 HSSGR---LLPTIRSRCQ---PISLKPLDDDELKKALSHLGSKQGIS-AGEETEALLQRSEGSVRKALLLLNYGGLEIID 251 (352)
T ss_pred CCHHH---CHHHHHHHCC---CCCCCCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHH
T ss_conf 99777---7689997433---21488939899999999875126899-87999999987089988999874487799999
Q ss_pred --HHHHHCCCCCHHHHHH
Q ss_conf --9998477878899999
Q gi|254780567|r 222 --LALSRGMGITRSLAAE 237 (246)
Q Consensus 222 --~sl~~kr~ITi~lvk~ 237 (246)
..+..+..++.+-+..
T Consensus 252 ~~~~ll~~p~~d~~~~~~ 269 (352)
T PRK09112 252 TVDQLLAGSGFDLPKAHA 269 (352)
T ss_pred HHHHHHHCCCCCHHHHHH
T ss_conf 999998089999899999
No 93
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.54 E-value=2.8e-06 Score=58.52 Aligned_cols=187 Identities=15% Similarity=0.158 Sum_probs=113.0
Q ss_pred EECCCHHH--HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC-----CCHHHHHHH--HHHH--H--------
Q ss_conf 65361899--999998510167884999878777868899999986276-----201356764--4454--6--------
Q gi|254780567|r 44 LVHSAIEQ--AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKS--LDSI--L-------- 104 (246)
Q Consensus 44 iv~~~N~~--A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~-----~~~~~~~~~--~~~~--~-------- 104 (246)
++|.|-.. .++.+..... ...+++|+|++|+||.++++++-..+.. +.+.+.... .... +
T Consensus 141 liG~S~am~~v~~~i~~~A~-s~~pVLI~GE~GTGK~~~Ar~IH~~S~r~~~pfv~vnC~~l~~~l~eseLFG~~~gaft 219 (441)
T PRK10365 141 MVGKSPAMQHLLSEIALVAP-SEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFT 219 (441)
T ss_pred CEECCHHHHHHHHHHHHHHC-CCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCCC
T ss_conf 66689999999999999848-89948998999810999999999657877898079878989845558986177556878
Q ss_pred -----------HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH----------CCCCCEEEEECCCCCCH---HHHHHHHH
Q ss_conf -----------666665334332100376-103354555431----------12342156403543200---22345667
Q gi|254780567|r 105 -----------IDTRKPVLLEDIDLLDFN-DTQLFHIINSIH----------QYDSSLLMTARTFPVSW---GVCLPDLC 159 (246)
Q Consensus 105 -----------~~~~~~i~iddi~~~~~~-ee~lf~l~n~~~----------~~~~~iilts~~~p~~~---~~~l~DL~ 159 (246)
...-..+.+|++..++-. |..|++++..-. ..+.+++.+++....+. ..+.+||-
T Consensus 220 ga~~~~~g~~~~A~gGTLfLdeI~~l~~~~Q~kLl~~l~~~~~~~~g~~~~~~~d~RiIaat~~~l~~~v~~g~Fr~dLy 299 (441)
T PRK10365 220 GADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 (441)
T ss_pred CCCCCCCCCEEECCCCEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEEECCCCCHHHHHHCCCCHHHHH
T ss_conf 96534689877889982550231529999999999877752100058873441363799837889999988198258999
Q ss_pred HHHHHCCEEEECCCCH--HHHH----HHHHHHHHHCCC---CCCHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 8852122245078897--8999----999998666289---798899999994-06679899999999999999984778
Q gi|254780567|r 160 SRLKAATVVKISLPDD--DFLE----KVIVKMFADRQI---FIDKKLAAYIVQ-RMERSLVFAEKLVDKMDNLALSRGMG 229 (246)
Q Consensus 160 SRl~~g~~~~I~~pdd--e~~~----~il~k~~~~r~i---~l~~~v~~yl~~-r~~Rs~~~l~~~l~~Ld~~sl~~kr~ 229 (246)
-||+. ..++|+|+-+ +.+. ..+.+.+...+. .+++++++.+.. +++.+++.+.+++++.- .+..+..
T Consensus 300 ~rL~~-~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvREL~n~iera~--~~~~~~~ 376 (441)
T PRK10365 300 YRLNV-VAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAV--VLLTGEY 376 (441)
T ss_pred HHHCC-HHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHH--HHCCCCC
T ss_conf 88601-11378260006200999999999999998499988889999999970999989999999999999--9578986
Q ss_pred CCHHH
Q ss_conf 78899
Q gi|254780567|r 230 ITRSL 234 (246)
Q Consensus 230 ITi~l 234 (246)
|+...
T Consensus 377 i~~~~ 381 (441)
T PRK10365 377 ISERE 381 (441)
T ss_pred CCHHH
T ss_conf 88465
No 94
>pfam01637 Arch_ATPase Archaeal ATPase. This family contain a conserved P-loop motif that is involved in binding ATP. This family is almost exclusively found in archaebacteria and particularly in Methanococcus jannaschii that encodes sixteen members of this family.
Probab=98.53 E-value=2.7e-06 Score=58.64 Aligned_cols=157 Identities=11% Similarity=0.111 Sum_probs=94.0
Q ss_pred HHHHHHHHC-CCCCEEEEECCCCCCHHHHHHHHHHHHCCC-----CHHHHHHHH--------------------------
Q ss_conf 999985101-678849998787778688999999862762-----013567644--------------------------
Q gi|254780567|r 53 VRLIDSWPS-WPSRVVILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSL-------------------------- 100 (246)
Q Consensus 53 ~~~i~~~~~-~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~-----~~~~~~~~~-------------------------- 100 (246)
.+.+.++.. +...+++|||+.|+|||.|++.++++.... ++.+.....
T Consensus 8 L~~L~~~~~~~~~~~ivi~G~RR~GKTsLi~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 87 (223)
T pfam01637 8 LKELEEWAERGTYPIIVVYGPRRCGKTALLREFLEELRELGYRVIYYDPLRREFEEKLDRFEEAKRLAEALGDALPKIGI 87 (223)
T ss_pred HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999669971899986887879999999998633468528999514443799999888889999998765123322
Q ss_pred ----------HH--HHHHH---HHHHHHHHHHCCCCC------CHHHHHHHHHHHCCC-CCEEEEECCCCCCHHHHHH--
Q ss_conf ----------45--46666---665334332100376------103354555431123-4215640354320022345--
Q gi|254780567|r 101 ----------DS--ILIDT---RKPVLLEDIDLLDFN------DTQLFHIINSIHQYD-SSLLMTARTFPVSWGVCLP-- 156 (246)
Q Consensus 101 ----------~~--~~~~~---~~~i~iddi~~~~~~------ee~lf~l~n~~~~~~-~~iilts~~~p~~~~~~l~-- 156 (246)
.. ..+.. .-++++|+++.+... ...|.+++++..... ..++++++.. +-+.-...
T Consensus 88 ~~~~~~~~~l~~~~~~l~~~~~~~iiviDEfq~l~~~~~~~~~~~~l~~~~d~~~~~~~~~~I~~GS~~-~~m~~~~~~~ 166 (223)
T pfam01637 88 AKSKLAFLSLTLLFELLKRKGKKIAIIIDEVQYAIGLNGAESYVKLLLNLIDYPPKEYHLIVVLCGSSE-GLTIELLDYK 166 (223)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHH-HHHHHHHCCC
T ss_conf 211207889999999998559965999701677640244305999999999975245775899972719-9999986205
Q ss_pred -HHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHH
Q ss_conf -667885212224507889789999999986662897988999999940667989999
Q gi|254780567|r 157 -DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213 (246)
Q Consensus 157 -DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~ 213 (246)
-|--|. ..++|+|.+.+.-...+.+.+...+..++++.++.+......-+.-+.
T Consensus 167 ~plygR~---~~i~l~p~~~~~~~efl~~~f~e~~~~~~~~~~~~iy~~~gG~P~yL~ 221 (223)
T pfam01637 167 SPLYGRH---RWALLKPFDFETAWNFLREGFEELYEPGPKEEFEEVWRLLGGNPGYLE 221 (223)
T ss_pred CCCCCCC---CEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHH
T ss_conf 6535750---227726899899999999999984789998999999999698389984
No 95
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.53 E-value=3.2e-06 Score=58.17 Aligned_cols=196 Identities=15% Similarity=0.155 Sum_probs=116.6
Q ss_pred CCCCCCCCEEECCCHH--HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC---CC--HHHHHH--HHHHH--
Q ss_conf 7668845416536189--9999998510167884999878777868899999986276---20--135676--44454--
Q gi|254780567|r 35 CLGISRDDLLVHSAIE--QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS---TR--FSNIAK--SLDSI-- 103 (246)
Q Consensus 35 ~~~~~~dnFiv~~~N~--~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~---~~--~~~~~~--~~~~~-- 103 (246)
...+.++. ++|.|-. ..++.+...... ..+++|.|++|+||.++++++-..+.. -+ +.+... .....
T Consensus 137 ~~~~~~~~-lig~S~~m~~v~~~i~~~A~s-~~~VLI~GEsGTGKe~~Ar~IH~~S~r~~~pFv~vnc~ai~~~l~eseL 214 (457)
T PRK11361 137 STSWQWGH-ILTNSPAMMDICKDTAKIALS-QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESEL 214 (457)
T ss_pred CCCCCCCC-CEECCHHHHHHHHHHHHHHCC-CCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHH
T ss_conf 01245677-454699999999999998488-9958998899857899999999837988998387647879857789997
Q ss_pred H-------------------HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH----------CCCCCEEEEECCCCCCH--
Q ss_conf 6-------------------666665334332100376-103354555431----------12342156403543200--
Q gi|254780567|r 104 L-------------------IDTRKPVLLEDIDLLDFN-DTQLFHIINSIH----------QYDSSLLMTARTFPVSW-- 151 (246)
Q Consensus 104 ~-------------------~~~~~~i~iddi~~~~~~-ee~lf~l~n~~~----------~~~~~iilts~~~p~~~-- 151 (246)
+ ...-..+.+|++..++-. |..|..++..-. ..+.++|.+++....++
T Consensus 215 FG~~kgaftga~~~~~G~~e~A~gGTLfLdeI~~l~~~~Q~kLLr~L~~~~~~~~g~~~~~~~dvRiIaaT~~~L~~~v~ 294 (457)
T PRK11361 215 FGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVK 294 (457)
T ss_pred HCCCCCCCCCCCCCCCCCHHHCCCCCEECCCHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEECCEEEECCCCCHHHHHH
T ss_conf 18766787885314698613359982631466452399999999998649278569971366534899657878599987
Q ss_pred -HHHHHHHHHHHHHCCEEEECCCCH--HHHHH----HHHHHHHHCCC---CCCHHHHHHHHHC-CCCCHHHHHHHHHHHH
Q ss_conf -223456678852122245078897--89999----99998666289---7988999999940-6679899999999999
Q gi|254780567|r 152 -GVCLPDLCSRLKAATVVKISLPDD--DFLEK----VIVKMFADRQI---FIDKKLAAYIVQR-MERSLVFAEKLVDKMD 220 (246)
Q Consensus 152 -~~~l~DL~SRl~~g~~~~I~~pdd--e~~~~----il~k~~~~r~i---~l~~~v~~yl~~r-~~Rs~~~l~~~l~~Ld 220 (246)
..+.+||-.||+ +..++++|+-+ +.... .+.+.+...+. .+++++++.|..+ ++.+++.+.+++++.-
T Consensus 295 ~g~Fr~DLyyrL~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvREL~n~ierav 373 (457)
T PRK11361 295 EGTFREDLFYRLN-VIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAV 373 (457)
T ss_pred CCCCHHHHHHHHC-EEEEECCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 5832388995302-212517385458754999999999999997499989889999999956999979999999999999
Q ss_pred HHHHHHCCCCCHHHH
Q ss_conf 999984778788999
Q gi|254780567|r 221 NLALSRGMGITRSLA 235 (246)
Q Consensus 221 ~~sl~~kr~ITi~lv 235 (246)
.+..+..|+..-+
T Consensus 374 --~~~~~~~i~~~~l 386 (457)
T PRK11361 374 --VMNSGPIIFSEDL 386 (457)
T ss_pred --HHCCCCCCCHHHC
T ss_conf --8289981566768
No 96
>pfam03215 Rad17 Rad17 cell cycle checkpoint protein.
Probab=98.53 E-value=7.6e-06 Score=55.86 Aligned_cols=168 Identities=13% Similarity=0.112 Sum_probs=94.4
Q ss_pred HHHHHHHHCC--CCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHH---------------------------HHHHHHH
Q ss_conf 9999851016--7884999878777868899999986276201356---------------------------7644454
Q gi|254780567|r 53 VRLIDSWPSW--PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNI---------------------------AKSLDSI 103 (246)
Q Consensus 53 ~~~i~~~~~~--~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~---------------------------~~~~~~~ 103 (246)
..|++.+..+ +.+.|+|.||+|||||..+++++++.+..+..-. .......
T Consensus 32 ~~WL~~~~~~~~~~~iLlLtGPaG~GKTTTI~lLAkeLG~ei~EW~NP~~~~~~~~~~q~~d~~g~~~~~~~S~~~~F~e 111 (490)
T pfam03215 32 DHWLKAVFLESNKQLILLLTGPSGCGKSTTVKVLSKELGIEIIEWSNPEYLHNPDNECQKPDFRGDCIVNSLSQMEQFRE 111 (490)
T ss_pred HHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 99999985477773189987989988999999999975968998148654567750221012123457666637777678
Q ss_pred HHH-------------HHHHHHHHHHHCCCC-CCHHHHHHHHHHH-CCCC-CEEEEEC--CCCCCHHH-----------H
Q ss_conf 666-------------666533433210037-6103354555431-1234-2156403--54320022-----------3
Q gi|254780567|r 104 LID-------------TRKPVLLEDIDLLDF-NDTQLFHIINSIH-QYDS-SLLMTAR--TFPVSWGV-----------C 154 (246)
Q Consensus 104 ~~~-------------~~~~i~iddi~~~~~-~ee~lf~l~n~~~-~~~~-~iilts~--~~p~~~~~-----------~ 154 (246)
++. ..+++.+|++...-. +...+...+-... ..+. ++|+.-+ ........ .
T Consensus 112 FLlr~~ky~sL~~~~~~kriILIEE~Pn~~~~d~~~fr~~L~~~L~s~~~~PlV~IiSEt~s~~g~~~~~~~~~ta~rLl 191 (490)
T pfam03215 112 FLLRGARYGSLQGGGLKKKLILVEELPNQFYSDAEKFREVIREVLQSIWHLPLIFCLTECNSLEGDNNQDRFGIDAETIM 191 (490)
T ss_pred HHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHC
T ss_conf 87622335654457887359999658874423669999999999970899987999970466667764332321078635
Q ss_pred HHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCC---CCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 456678852122245078897899999999866628---9798899999994066798999999999999999
Q gi|254780567|r 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ---IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 (246)
Q Consensus 155 l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~---i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl 224 (246)
.+++ ..--+..+++..|+.-..+.+.|.+.+...+ .......++.|++....|.|++ ++.|.-.++
T Consensus 192 g~eI-l~hp~i~~I~FNpIApT~M~KaL~~I~~kE~~~~~~~~~~~le~Ia~~S~GDIRsA---InsLQF~~~ 260 (490)
T pfam03215 192 TKDI-LIMPRIDTITFNPIAPTFMKKALVRISVQEGKLKSPKSDSKLEVICQEAGGDLRSA---INSLQFSSS 260 (490)
T ss_pred CHHH-HHCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHH---HHHHHHHCC
T ss_conf 9888-70889636986888788999999999998576556752038999998648729999---999998626
No 97
>KOG1514 consensus
Probab=98.50 E-value=3.6e-06 Score=57.88 Aligned_cols=190 Identities=15% Similarity=0.153 Sum_probs=116.1
Q ss_pred HHHHHHHH-C-CCCCEEEEECCCCCCHHHHHHHHHHHHC-----------------CCCH---HHHHHHH----------
Q ss_conf 99998510-1-6788499987877786889999998627-----------------6201---3567644----------
Q gi|254780567|r 53 VRLIDSWP-S-WPSRVVILVGPSGSGKSCLANIWSDKSR-----------------STRF---SNIAKSL---------- 100 (246)
Q Consensus 53 ~~~i~~~~-~-~~~~~l~i~G~~GsGKTHLl~a~~~~~~-----------------~~~~---~~~~~~~---------- 100 (246)
++.++... . +.+..+||.|-||+||||..+...+... +..+ ...+...
T Consensus 409 ~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~ 488 (767)
T KOG1514 409 EDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVT 488 (767)
T ss_pred HHHHHHHCCCCCCCEEEEEECCCCCCCEEHHHHHHHHHHHHHHHCCCCCCCEEEECCEEECCHHHHHHHHHHHCCCCCCC
T ss_conf 99999762777774079984699988321299999999987750578986079871446158899999999975557430
Q ss_pred --------HHHH-----HHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHCCCCCEEEEECCCCCCHH--HHHHHHHHHHHH
Q ss_conf --------4546-----6666653343321003-76103354555431123421564035432002--234566788521
Q gi|254780567|r 101 --------DSIL-----IDTRKPVLLEDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWG--VCLPDLCSRLKA 164 (246)
Q Consensus 101 --------~~~~-----~~~~~~i~iddi~~~~-~~ee~lf~l~n~~~~~~~~iilts~~~p~~~~--~~l~DL~SRl~~ 164 (246)
..-+ -....++.+|.++.+- ..|+.|+++|+.-...+.++++.+-..-.++. .......||+.
T Consensus 489 ~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg- 567 (767)
T KOG1514 489 WDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDLPERLLMNRVSSRLG- 567 (767)
T ss_pred HHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHCCCHHHHCC-
T ss_conf 7788999986541678787877999635787735209889777407767898669999516564779885431123306-
Q ss_pred CCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH-HC----------CCCCHH
Q ss_conf 2224507889789999999986662897988999999940667989999999999999998-47----------787889
Q gi|254780567|r 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS-RG----------MGITRS 233 (246)
Q Consensus 165 g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~-~k----------r~ITi~ 233 (246)
+.-+..+|-+.+.+..|+.-..... -.+..++++++++++.---++++.+++-+.+++-. .+ ..+++.
T Consensus 568 ~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~k~~~~q~v~~~ 646 (767)
T KOG1514 568 LTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKGKLAVSQLVGIL 646 (767)
T ss_pred CEEEECCCCCHHHHHHHHHHHCCCH-HHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHH
T ss_conf 5055137788999999999860315-431424899999887750422788889989999975422134555533244329
Q ss_pred HHHHHHHHHHC
Q ss_conf 99999986741
Q gi|254780567|r 234 LAAEVLKETQQ 244 (246)
Q Consensus 234 lvk~vL~~~~~ 244 (246)
.+.+++.++-.
T Consensus 647 ~v~~Ai~em~~ 657 (767)
T KOG1514 647 HVMEAINEMLA 657 (767)
T ss_pred HHHHHHHHHHH
T ss_conf 99999998750
No 98
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.49 E-value=1.4e-05 Score=54.18 Aligned_cols=112 Identities=14% Similarity=0.149 Sum_probs=78.7
Q ss_pred HHHHHHHHHHCCCC-C-EEEEECCCCCCH--------HHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 33545554311234-2-156403543200--------2234566788521222450788978999999998666289798
Q gi|254780567|r 125 QLFHIINSIHQYDS-S-LLMTARTFPVSW--------GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194 (246)
Q Consensus 125 ~lf~l~n~~~~~~~-~-iilts~~~p~~~--------~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~ 194 (246)
+.|.++|...++.- + ++++++.--... .....||.-|+ +++.-.|-+.+..+.||...+...++.++
T Consensus 306 E~FsFlnrAlEse~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRl---lII~t~py~~~EireIi~iRa~ee~i~l~ 382 (450)
T COG1224 306 ECFSFLNRALESELAPIIILATNRGMTKIRGTDIESPHGIPLDLLDRL---LIISTRPYSREEIREIIRIRAKEEDIELS 382 (450)
T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCEEEECCCCCCCCCCCCHHHHHHE---EEEECCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 899999987631467579997177500121667768888987666225---67744779889999999976435403048
Q ss_pred HHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHH-CCCCCHHHHHHHH
Q ss_conf 899999994066-79899999999999999984-7787889999999
Q gi|254780567|r 195 KKLAAYIVQRME-RSLVFAEKLVDKMDNLALSR-GMGITRSLAAEVL 239 (246)
Q Consensus 195 ~~v~~yl~~r~~-Rs~~~l~~~l~~Ld~~sl~~-kr~ITi~lvk~vL 239 (246)
+++++|+++--. +|++....++.--...+... ++.|.+.-|.++-
T Consensus 383 ~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~ 429 (450)
T COG1224 383 DDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAK 429 (450)
T ss_pred HHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHCCCEEEHHHHHHHH
T ss_conf 88999997515034489999861688899987179746566799999
No 99
>pfam05621 TniB Bacterial TniB protein. This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein which is involved in Tn5053 mercury resistance transposition.
Probab=98.48 E-value=1.6e-05 Score=53.83 Aligned_cols=187 Identities=13% Similarity=0.153 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHCCCC----CEEEEECCCCCCHHHHHHHHHHHHCCCCH----------------------HHHHHH-H--
Q ss_conf 999999985101678----84999878777868899999986276201----------------------356764-4--
Q gi|254780567|r 50 EQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLANIWSDKSRSTRF----------------------SNIAKS-L-- 100 (246)
Q Consensus 50 ~~A~~~i~~~~~~~~----~~l~i~G~~GsGKTHLl~a~~~~~~~~~~----------------------~~~~~~-~-- 100 (246)
+.|.+-++.+..+|. ..+.|+|++|.|||.+++-++.......- |..-.. +
T Consensus 43 ~~~L~~Le~Ll~~P~~~Rmp~lLlvGdsnnGKT~Iv~rF~~~hp~~~d~~~~~~PVl~vq~P~~p~~~~lY~~IL~~l~a 122 (302)
T pfam05621 43 VEALNRLEALYAWPNKQRMPNLLLVGPTNNGKSMIVEKFRRAHPAGSDADQEHIPVLVVQMPSEPSVIRFYVALLAAMGA 122 (302)
T ss_pred HHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 99999999998468646887558870798878999999999679987866670218999769998868999999998378
Q ss_pred -----HH-----------HHHHHHHHHHHHHHHCC-CCC---CHHHHHHHHHHHCCC-CCEEEEECCCCCCHHHHHHHHH
Q ss_conf -----45-----------46666665334332100-376---103354555431123-4215640354320022345667
Q gi|254780567|r 101 -----DS-----------ILIDTRKPVLLEDIDLL-DFN---DTQLFHIINSIHQYD-SSLLMTARTFPVSWGVCLPDLC 159 (246)
Q Consensus 101 -----~~-----------~~~~~~~~i~iddi~~~-~~~---ee~lf~l~n~~~~~~-~~iilts~~~p~~~~~~l~DL~ 159 (246)
.. ...-..+.+++|.+|.+ .|. +.++++.+-.+...- -.+|..+....-..-...+.|.
T Consensus 123 P~~~~~~~~~~~~~~~~ll~~~~vrmLIIDEiHnlL~Gs~~~qr~~ln~LK~L~Nel~IpiV~vGt~eA~~ai~tD~Qla 202 (302)
T pfam05621 123 PLRPRPRLPEMEQLALALLRKVGVRMLVIDELHNVLAGNSVNRREFLNLLRFLGNELRIPLVGVGTRDAYLAIRSDDQLE 202 (302)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHCCHHHH
T ss_conf 77888778999999999999749878998543656048688999999999998636587869953199999970688888
Q ss_pred HHHHHCCEEEECCCCHHHHHHHHH---HHHHHCC-CC-CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC-CCCHH
Q ss_conf 885212224507889789999999---9866628-97-988999999940667989999999999999998477-87889
Q gi|254780567|r 160 SRLKAATVVKISLPDDDFLEKVIV---KMFADRQ-IF-IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM-GITRS 233 (246)
Q Consensus 160 SRl~~g~~~~I~~pdde~~~~il~---k~~~~r~-i~-l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr-~ITi~ 233 (246)
|||.-...-. =.+|++ -..+|. +..-.+. -. -+++...+|....+...+.+..+++.....|+..|+ .||..
T Consensus 203 sRF~~~~Lp~-W~~d~e-f~~LL~sfe~~LPL~~~S~L~~~~~a~~I~~~SeG~iGei~~Ll~~aA~~AI~sG~E~It~~ 280 (302)
T pfam05621 203 NRFEPMLLPP-WEANDD-CCSLLASFAASLPLRRPSPIATLDMARYLLTRSEGTIGELAHLLMAAAIAAVESGEEAINHR 280 (302)
T ss_pred HHCCCCCCCC-CCCCCH-HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 5058611688-889808-99999999986888777688889999999998599287999999999999984787100899
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780567|r 234 LAAEV 238 (246)
Q Consensus 234 lvk~v 238 (246)
.++++
T Consensus 281 ~l~~~ 285 (302)
T pfam05621 281 TLSMA 285 (302)
T ss_pred HHHHC
T ss_conf 99667
No 100
>KOG0731 consensus
Probab=98.47 E-value=1e-05 Score=55.04 Aligned_cols=204 Identities=16% Similarity=0.197 Sum_probs=116.9
Q ss_pred CCCCCCCCCCEEECCCHHH----HHHHHHHHHC------CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 8776688454165361899----9999985101------67884999878777868899999986276201356764445
Q gi|254780567|r 33 PRCLGISRDDLLVHSAIEQ----AVRLIDSWPS------WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 (246)
Q Consensus 33 ~~~~~~~~dnFiv~~~N~~----A~~~i~~~~~------~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~ 102 (246)
.-++.-+|.|+-=++.=+. .++.++++.. ..-+.+.|.||||+|||-|+.|+|.+++--++......+..
T Consensus 303 ~~~t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE 382 (774)
T KOG0731 303 EGNTGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVE 382 (774)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCEEEECHHHHHH
T ss_conf 78988760102670899999999999843989998747767675178789998678999988530589646413378888
Q ss_pred HH----------------HHHHHHHHHHHHHCCCCCC------------HHHH-HH---HHHHHCCCCCEEEEECCCCCC
Q ss_conf 46----------------6666653343321003761------------0335-45---554311234215640354320
Q gi|254780567|r 103 IL----------------IDTRKPVLLEDIDLLDFND------------TQLF-HI---INSIHQYDSSLLMTARTFPVS 150 (246)
Q Consensus 103 ~~----------------~~~~~~i~iddi~~~~~~e------------e~lf-~l---~n~~~~~~~~iilts~~~p~~ 150 (246)
.+ ..+..++.+|.++.+.... |..| .+ .+-......-++++++..|.-
T Consensus 383 ~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ 462 (774)
T KOG0731 383 MFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDI 462 (774)
T ss_pred HHCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC
T ss_conf 76034348889999874326980797145420031255666678880788899988787527767784799811688664
Q ss_pred HHHHHHHHH-HHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHH-C
Q ss_conf 022345667-885212224507889789999999986662897988999999940667-9899999999999999984-7
Q gi|254780567|r 151 WGVCLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER-SLVFAEKLVDKMDNLALSR-G 227 (246)
Q Consensus 151 ~~~~l~DL~-SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~R-s~~~l~~~l~~Ld~~sl~~-k 227 (246)
++-.+ |+ -||- -.+.|+.||...|..|++.++....+..++.-+.=++.+.+. +-.+|..+.+...-.+... .
T Consensus 463 ld~al--lrpGRfd--r~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~ 538 (774)
T KOG0731 463 LDPAL--LRPGRFD--RQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGL 538 (774)
T ss_pred CCHHH--CCCCCCC--CCEECCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 28876--4987555--5232469851416899999862157763156799998608999678998642499999987336
Q ss_pred CCCCHHHHHHHHH
Q ss_conf 7878899999998
Q gi|254780567|r 228 MGITRSLAAEVLK 240 (246)
Q Consensus 228 r~ITi~lvk~vL~ 240 (246)
+.|+..-..++++
T Consensus 539 ~~i~~~~~~~a~~ 551 (774)
T KOG0731 539 REIGTKDLEYAIE 551 (774)
T ss_pred CCCCHHHHHHHHH
T ss_conf 7301564999999
No 101
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=1.4e-06 Score=60.30 Aligned_cols=172 Identities=18% Similarity=0.212 Sum_probs=102.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH-----------------HH-------HHHHHHHHHHHHC
Q ss_conf 78849998787778688999999862762013567644454-----------------66-------6666533433210
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI-----------------LI-------DTRKPVLLEDIDL 118 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~~-----------------~~-------~~~~~i~iddi~~ 118 (246)
.+..+++.||||+|||.|.+++|+..+..|+...-....+. .+ ...-.+.+|.++.
T Consensus 349 kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGaMPGrIiQ~mkka~~~NPv~LLDEIDK 428 (782)
T COG0466 349 KGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDK 428 (782)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECHHH
T ss_conf 88579997899887011899999995897799954765427775355312335687289999998677687478640333
Q ss_pred CCCCC-----HHHH-------------HHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHH
Q ss_conf 03761-----0335-------------45554311234215640354320022345667885212224507889789999
Q gi|254780567|r 119 LDFND-----TQLF-------------HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 (246)
Q Consensus 119 ~~~~e-----e~lf-------------~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~ 180 (246)
+..+- -+|+ |.++.-+.- ..++|.++.. .++..-.-|.-|+. +++|.--.++++..
T Consensus 429 m~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDL-S~VmFiaTAN--sl~tIP~PLlDRME---iI~lsgYt~~EKl~ 502 (782)
T COG0466 429 MGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDL-SKVMFIATAN--SLDTIPAPLLDRME---VIRLSGYTEDEKLE 502 (782)
T ss_pred CCCCCCCCHHHHHHHHCCHHHCCCHHHCCCCCCCCH-HHEEEEEECC--CCCCCCHHHHCCEE---EEEECCCCHHHHHH
T ss_conf 167777886888886269765676122201676644-3258886037--51329867843030---56426888699999
Q ss_pred HHHHHH-----HHC-----CCCCCHHHHHHHHHCCCCCH--HHHHHHHHHHHHHHHHH----C--C--CCCHHHHHHHHH
Q ss_conf 999986-----662-----89798899999994066798--99999999999999984----7--7--878899999998
Q gi|254780567|r 181 VIVKMF-----ADR-----QIFIDKKLAAYIVQRMERSL--VFAEKLVDKMDNLALSR----G--M--GITRSLAAEVLK 240 (246)
Q Consensus 181 il~k~~-----~~r-----~i~l~~~v~~yl~~r~~Rs~--~~l~~~l~~Ld~~sl~~----k--r--~ITi~lvk~vL~ 240 (246)
|-+++. .+. .+.++++++.+|++++.|+. |++..-+.++.+-+... + . .|+-..+++.|.
T Consensus 503 IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~i~ki~RK~~~~i~~~~~k~~~~i~~~~l~~yLG 582 (782)
T COG0466 503 IAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNLEREIAKICRKAAKKILLKKEKSIVKIDEKNLKKYLG 582 (782)
T ss_pred HHHHHCCHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHC
T ss_conf 99984456899975998233556589999999987676210389999999999999999725756624427889999739
No 102
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.47 E-value=1.8e-06 Score=59.70 Aligned_cols=50 Identities=22% Similarity=0.286 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHCCEEEECCCCHHHHHHHHHHH-------HHHC-CCC--CCHHHHHHHHHCCC
Q ss_conf 34566788521222450788978999999998-------6662-897--98899999994066
Q gi|254780567|r 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKM-------FADR-QIF--IDKKLAAYIVQRME 206 (246)
Q Consensus 154 ~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~-------~~~r-~i~--l~~~v~~yl~~r~~ 206 (246)
+.|.+..|+ . ++...+++.+.+..|+... +..+ ++. +++++.+||+++--
T Consensus 751 F~PEFlnRi-~--ii~F~~L~~~~l~~Iv~~~l~~l~~rL~~~~~i~l~~~~~~~~~l~~~g~ 810 (852)
T TIGR03345 751 FKPAFLGRM-T--VIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCT 810 (852)
T ss_pred CCHHHHCCE-E--EEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHCC
T ss_conf 798886456-6--89736899999999999999999999986289689988999999998289
No 103
>TIGR02928 TIGR02928 orc1/cdc6 family replication initiation protein; InterPro: IPR014277 This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. The proteins in this entry are found exclusively in the archaea. Several members may be found in a genome and interact with each other..
Probab=98.46 E-value=1.1e-05 Score=54.98 Aligned_cols=203 Identities=15% Similarity=0.155 Sum_probs=120.6
Q ss_pred CCCCCCC-CEEECCCHH---HHHHHHHHHH-CCCCCEEEEECCCCCCHHHHHHHHHHHH----C---C-----CCHHHH-
Q ss_conf 7668845-416536189---9999998510-1678849998787778688999999862----7---6-----201356-
Q gi|254780567|r 35 CLGISRD-DLLVHSAIE---QAVRLIDSWP-SWPSRVVILVGPSGSGKSCLANIWSDKS----R---S-----TRFSNI- 96 (246)
Q Consensus 35 ~~~~~~d-nFiv~~~N~---~A~~~i~~~~-~~~~~~l~i~G~~GsGKTHLl~a~~~~~----~---~-----~~~~~~- 96 (246)
.+.|--| |-|+|--.+ .|..+-.-+- .|.-+.++|||++|+|||--.+..+++. . . +++.|.
T Consensus 9 ~~dY~Pden~i~hRdeqI~~l~~~L~~~l~PG~~P~Ni~iYGkTGtGKT~vt~~v~~~l~~~~~~~d~~D~~~~~~NC~~ 88 (383)
T TIGR02928 9 EPDYVPDENRIVHRDEQIEELAKALRPILRPGSRPSNIFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRDVSTVYINCQI 88 (383)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC
T ss_conf 75770274246686789999999988750674898725887888987889999999999998622699715899977854
Q ss_pred -----------HHHH----------------H------HHHHH-HH---HHHHHHHHHCC--CCCCH-----HHHHHHHH
Q ss_conf -----------7644----------------4------54666-66---65334332100--37610-----33545554
Q gi|254780567|r 97 -----------AKSL----------------D------SILID-TR---KPVLLEDIDLL--DFNDT-----QLFHIINS 132 (246)
Q Consensus 97 -----------~~~~----------------~------~~~~~-~~---~~i~iddi~~~--~~~ee-----~lf~l~n~ 132 (246)
...+ . ...+. .. -++++|+++.+ ...++ .|+.|. +
T Consensus 89 ~~T~y~~~~~L~~~ln~~~~~~~vP~tG~s~~~~~~~l~~~l~~~~~~~~~ivLDEiD~Lv~~~~d~PAyS~~LY~L~-R 167 (383)
T TIGR02928 89 LDTSYQVLVELANQLNRRGSGEEVPTTGLSTSEVFRELYKELNRERGDSLIIVLDEIDKLVRKDDDDPAYSKLLYQLS-R 167 (383)
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHCCCCCCHHHHHHHHHHH-H
T ss_conf 684699999999985157788889887787899999999998320188799986231022158888807878853433-1
Q ss_pred HHC----CCCCEEEEE-CCCCCCHHHHHHHHHHHHHHCCE---EEECCCCHHHHHHHHHHHH-HH--CCCCCCHHHHHHH
Q ss_conf 311----234215640-35432002234566788521222---4507889789999999986-66--2897988999999
Q gi|254780567|r 133 IHQ----YDSSLLMTA-RTFPVSWGVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMF-AD--RQIFIDKKLAAYI 201 (246)
Q Consensus 133 ~~~----~~~~iilts-~~~p~~~~~~l~DL~SRl~~g~~---~~I~~pdde~~~~il~k~~-~~--r~i~l~~~v~~yl 201 (246)
+.+ .+.++-+.+ +...... +.|-+|-+|-+. +..+|-|-+.+..||+... .. +.=.++++||...
T Consensus 168 a~~~~~~~~~~vgvIgISND~~f~----~~Ld~RVkSsL~~eei~FpPYdA~eL~~IL~~R~v~~AF~dGvl~d~VI~lc 243 (383)
T TIGR02928 168 ARENGDLENAKVGVIGISNDLKFR----ENLDPRVKSSLCEEEIVFPPYDAEELRDILENRAVEKAFYDGVLDDGVIPLC 243 (383)
T ss_pred HHHCCCCCCCCEEEEEEECCCHHH----HHCCCCEECCCCCCCCEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 000357788534899986571436----4457530132487400407988699999997203120336885462279999
Q ss_pred HHCCCCCHHHHHHHHHHHHH---HHHHHC-CCCCHHHHHHHHHHH
Q ss_conf 94066798999999999999---999847-787889999999867
Q gi|254780567|r 202 VQRMERSLVFAEKLVDKMDN---LALSRG-MGITRSLAAEVLKET 242 (246)
Q Consensus 202 ~~r~~Rs~~~l~~~l~~Ld~---~sl~~k-r~ITi~lvk~vL~~~ 242 (246)
|---.++.++++.+++.|-. .|-..+ ..||...|+++=+..
T Consensus 244 AA~aAq~hGDAR~AiDLLR~AGe~A~~~g~~~Vt~~HV~~A~e~~ 288 (383)
T TIGR02928 244 AALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEEAQEKI 288 (383)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC
T ss_conf 998620678789999999987687531576310088899999832
No 104
>COG1485 Predicted ATPase [General function prediction only]
Probab=98.46 E-value=1.7e-07 Score=65.96 Aligned_cols=89 Identities=19% Similarity=0.326 Sum_probs=59.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCC------CCHHHHH---H-------------HHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 7884999878777868899999986276------2013567---6-------------4445466666653343321003
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDKSRS------TRFSNIA---K-------------SLDSILIDTRKPVLLEDIDLLD 120 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~~~~------~~~~~~~---~-------------~~~~~~~~~~~~i~iddi~~~~ 120 (246)
+.+.+|+||+.|+|||||+..+...... ++..... . ........+.+++|+|.++..+
T Consensus 64 ~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~dpl~~iA~~~~~~~~vLCfDEF~VtD 143 (367)
T COG1485 64 PVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTDPLPPIADELAAETRVLCFDEFEVTD 143 (367)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEEEEEEECC
T ss_conf 88358888997864999999998658764566550779999999999997188886579999998417889863036237
Q ss_pred CCCHH-HHHHHHHHHCCCCCEEEEECCCCCCH
Q ss_conf 76103-35455543112342156403543200
Q gi|254780567|r 121 FNDTQ-LFHIINSIHQYDSSLLMTARTFPVSW 151 (246)
Q Consensus 121 ~~ee~-lf~l~n~~~~~~~~iilts~~~p~~~ 151 (246)
...-. |=-+++.+..+|..++.||+.+|.++
T Consensus 144 I~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~L 175 (367)
T COG1485 144 IADAMILGRLLEALFARGVVLVATSNTAPDNL 175 (367)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
T ss_conf 57889999999999977968999589996785
No 105
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=98.45 E-value=1e-06 Score=61.26 Aligned_cols=187 Identities=18% Similarity=0.261 Sum_probs=111.3
Q ss_pred EECCCHH--HHHHHHHHHHC---CCCC---EEEEECCCCCCHHHHHHHHHHHHCCCCHHHHH------------------
Q ss_conf 6536189--99999985101---6788---49998787778688999999862762013567------------------
Q gi|254780567|r 44 LVHSAIE--QAVRLIDSWPS---WPSR---VVILVGPSGSGKSCLANIWSDKSRSTRFSNIA------------------ 97 (246)
Q Consensus 44 iv~~~N~--~A~~~i~~~~~---~~~~---~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~------------------ 97 (246)
|.|.=+. ..+.+|+..-. .|++ .++++||.|+|||=|++.+|+..+-.+....-
T Consensus 499 IfGQD~AI~~lv~aiK~SrAGl~~~nkP~GSFLF~GPTGVGKTElak~LA~~LGv~l~RFDMSEYmEKHTVsRLIGsPPG 578 (774)
T TIGR02639 499 IFGQDEAIEQLVSAIKRSRAGLGEPNKPVGSFLFVGPTGVGKTELAKQLAEELGVHLLRFDMSEYMEKHTVSRLIGSPPG 578 (774)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 15158999999999999874247788816888864798962578899999970820010465044689999874168888
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHC----------CCCCEEEEECCCCCCHHH-----
Q ss_conf --------64445466666653343321003761-033545554311----------234215640354320022-----
Q gi|254780567|r 98 --------KSLDSILIDTRKPVLLEDIDLLDFND-TQLFHIINSIHQ----------YDSSLLMTARTFPVSWGV----- 153 (246)
Q Consensus 98 --------~~~~~~~~~~~~~i~iddi~~~~~~e-e~lf~l~n~~~~----------~~~~iilts~~~p~~~~~----- 153 (246)
.-++...-..+.++.+|.+...+-|- ..|+.++++... ++--+||||+.-.+++.-
T Consensus 579 YVGfEqGGLLT~AvrK~P~cVLLLDEIEKAHpDI~NILLQVMD~AtLTDN~GrKaDFRNVILIMTSNaGa~E~~~~~iGF 658 (774)
T TIGR02639 579 YVGFEQGGLLTDAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGAREMSKNPIGF 658 (774)
T ss_pred CCCCCCCCCCHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEECCEEEEECCCCCCCCCCCCCCCC
T ss_conf 51316777212233128853542346666313366678766335434058885763113688840370010236776442
Q ss_pred ----------------HHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHH-------CC--CCCCHHHHHHHHHCCCCC
Q ss_conf ----------------34566788521222450788978999999998666-------28--979889999999406679
Q gi|254780567|r 154 ----------------CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD-------RQ--IFIDKKLAAYIVQRMERS 208 (246)
Q Consensus 154 ----------------~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~-------r~--i~l~~~v~~yl~~r~~Rs 208 (246)
+-|-.+-||-. ++...+++.+....|++|.... ++ +.++++++.|||+.=--.
T Consensus 659 ~~~~~~~~~~~Aikk~F~PEFRNRLDa--ii~F~~L~~~~~~~i~~K~l~el~~~L~eK~v~l~l~~~a~~~LA~KGY~~ 736 (774)
T TIGR02639 659 GGERVEDKSEKAIKKLFSPEFRNRLDA--IIAFNDLSEEVAEKIVKKFLDELQKQLNEKNVELELTDDAIKYLAEKGYDE 736 (774)
T ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCCC--EEECCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHCCCC
T ss_conf 555412334888973158742013346--441699889999999999999999755306537876478999998636781
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 8999999999999999847787889999999
Q gi|254780567|r 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 (246)
Q Consensus 209 ~~~l~~~l~~Ld~~sl~~kr~ITi~lvk~vL 239 (246)
--.++.+-.-++ ..|.-+|+.|||
T Consensus 737 efGARpl~R~I~-------~~i~~~L~dEIL 760 (774)
T TIGR02639 737 EFGARPLARVIQ-------EEIKKPLSDEIL 760 (774)
T ss_pred CCCCCHHHHHHH-------HHHHHHHHHHHC
T ss_conf 105544899988-------741257654420
No 106
>pfam05673 DUF815 Protein of unknown function (DUF815). This family consists of several bacterial proteins of unknown function.
Probab=98.44 E-value=1.8e-05 Score=53.49 Aligned_cols=185 Identities=17% Similarity=0.197 Sum_probs=108.0
Q ss_pred CCCCCCCCCCCCEEECCCHHHHH-HHHHHHHC-CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHH-----HHHHH
Q ss_conf 88877668845416536189999-99985101-6788499987877786889999998627620135676-----44454
Q gi|254780567|r 31 SFPRCLGISRDDLLVHSAIEQAV-RLIDSWPS-WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAK-----SLDSI 103 (246)
Q Consensus 31 ~~~~~~~~~~dnFiv~~~N~~A~-~~i~~~~~-~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~-----~~~~~ 103 (246)
+........+++.+==+..+.++ +=..++.. .|.|.+.|||+.|+|||.|.+++.+++....+..... .....
T Consensus 18 ~i~~~d~v~l~~L~Gie~Qk~~l~~NT~~F~~G~pAnnvLLwG~RGtGKSSlVKall~~~~~~gLrlIEv~k~~L~~Lp~ 97 (248)
T pfam05673 18 PVPHPDPVDLDDLVGIDRQKEALLRNTEQFLAGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVDKDDLGDLPD 97 (248)
T ss_pred EECCCCCCCHHHHCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECHHHHCCHHH
T ss_conf 51788989988934939999999999999980898613676768989888999999998631495699987888721999
Q ss_pred H---H--HHHH-HHHHHHHHCCCCCCHHHHHHHHHHHC-------CCCCEEEEECCC---CCC---------H---HHHH
Q ss_conf 6---6--6666-53343321003761033545554311-------234215640354---320---------0---2234
Q gi|254780567|r 104 L---I--DTRK-PVLLEDIDLLDFNDTQLFHIINSIHQ-------YDSSLLMTARTF---PVS---------W---GVCL 155 (246)
Q Consensus 104 ~---~--~~~~-~i~iddi~~~~~~ee~lf~l~n~~~~-------~~~~iilts~~~---p~~---------~---~~~l 155 (246)
. + ...+ ++.+||+.+-.++ .-|..+-.+.+ .+-.+..||+.. |.. + +...
T Consensus 98 i~~~l~~~~~kFIiF~DDLSFe~~d--~~yk~LKs~LeG~l~~~p~NvliYaTSNRRHLi~e~~~d~~~~~ei~~~d~~e 175 (248)
T pfam05673 98 IVDLLRGRPYRFILFCDDLSFEEGE--SSYKALKSVLEGGLEARPDNVLIYATSNRRHLIPEYMSDNEGDGEIHPGDAVE 175 (248)
T ss_pred HHHHHHCCCCCEEEEECCCCCCCCC--HHHHHHHHHHCCCCCCCCCEEEEEEECCCHHCCCHHHCCCCCCCCCCCCHHHH
T ss_conf 9999964997579996355767897--36999999965764468873899984270003633323477744367255777
Q ss_pred HH--HHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 56--67885212224507889789999999986662897988-----999999940667989999999999
Q gi|254780567|r 156 PD--LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK-----KLAAYIVQRMERSLVFAEKLVDKM 219 (246)
Q Consensus 156 ~D--L~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~-----~v~~yl~~r~~Rs~~~l~~~l~~L 219 (246)
+. |.-| -|+.+...+||.+.-..|+++++...++.+++ +++.|-+.|-.||-+.+..++..+
T Consensus 176 EklSLsDR--FGL~l~F~~~~q~~YL~IV~~~~~~~~~~~~~e~l~~~Al~wa~~rg~rSGR~A~QFi~~l 244 (248)
T pfam05673 176 EKLSLSDR--FGLWLGFHPFDQDEYLAIVRGYAARLGLPLDEEELRREALQWALTRGGRSGRTARQFIDDL 244 (248)
T ss_pred HHHHHHHH--CCEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 45348986--7717850799999999999999998299999899999999999983898588799999998
No 107
>KOG0737 consensus
Probab=98.43 E-value=3.2e-06 Score=58.20 Aligned_cols=125 Identities=18% Similarity=0.365 Sum_probs=82.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH------------HH----HHHHHHHHHHHHHCCCC-----
Q ss_conf 7884999878777868899999986276201356764445------------46----66666533433210037-----
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS------------IL----IDTRKPVLLEDIDLLDF----- 121 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~------------~~----~~~~~~i~iddi~~~~~----- 121 (246)
|-+.+.+|||||+|||-|+.+.+++.++.++.-.-..+.. .+ .....++.+|.++..-+
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~ 205 (386)
T KOG0737 126 PPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRST 205 (386)
T ss_pred CCCCCEECCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCC
T ss_conf 86430511899821889999999872797100013655326677788899999820653486156566588898640464
Q ss_pred CC-------HHHHHHHHHHHCCCC--CEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 61-------033545554311234--215640354320022345667885212224507889789999999986662897
Q gi|254780567|r 122 ND-------TQLFHIINSIHQYDS--SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 (246)
Q Consensus 122 ~e-------e~lf~l~n~~~~~~~--~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~ 192 (246)
+. .++..+|+.+..+.. -+|+.++..|.+++ +...+|+- .++.|.-|+.+.|.+||+-......+.
T Consensus 206 dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlD---eAiiRR~p--~rf~V~lP~~~qR~kILkviLk~e~~e 280 (386)
T KOG0737 206 DHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLD---EAIIRRLP--RRFHVGLPDAEQRRKILKVILKKEKLE 280 (386)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHH---HHHHHHCC--CEEEECCCCHHHHHHHHHHHHCCCCCC
T ss_conf 2799999999999986164678871599970799984378---99998476--436537984444999999994243468
No 108
>TIGR01242 26Sp45 26S proteasome subunit P45 family; InterPro: IPR005937 Intracellular proteins, including short-lived proteins such as cyclin, Mos, Myc, p53, NF-kappaB, and IkappaB, are degraded by the ubiquitin-proteasome system. The 26S proteasome (a 2 MDa complex) is made up of two subcomplexes: the 20S proteasome and the regulatory complex. The former is a 700 kDa cylindrical protease complex consisting of four stacks of heptameric rings with 28 subunits (i.e., 7777) with molecular masses of about 20-35 kDa, whereas the latter is a 700-1000 kDa complex consisting of at least 18 subunits with molecular masses of 28-110 kDa, including 6 putative ATPases (Rpt1-Rpt6) and 12 non-ATPase subunits (Rpn1-12). Members of the 26S proteasome subunit P45 family: ATPase p45/Sug1/Rpt6 may be phosphorylated within the proteasome. This phosphorylation event may play a key role in ATP-dependent proteolysis because a good correlation exists between the inhibition pattern of protein kinase inhibitors against the phosphorylation of p45 and that against the ATP-dependent proteolytic activity , . More information about these protein can be found at Protein of the Month: AAA ATPases .; GO: 0016787 hydrolase activity, 0030163 protein catabolic process, 0005634 nucleus, 0005737 cytoplasm.
Probab=98.43 E-value=1.8e-07 Score=65.81 Aligned_cols=174 Identities=14% Similarity=0.229 Sum_probs=110.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH----------------HHHHHHHHHHHHHHCCCCC----
Q ss_conf 78849998787778688999999862762013567644454----------------6666665334332100376----
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI----------------LIDTRKPVLLEDIDLLDFN---- 122 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~iddi~~~~~~---- 122 (246)
|-+.+.||||||+|||-|+.|.|++.+|.++.-....+-.. .-.+..++.||.++.+...
T Consensus 155 PPKGvLLyGPPGtGKTLlAKAvA~et~ATFIrvVgSElV~KyIGEGArLV~~~F~LAkEKaPsIiFIDEiDAiaakR~~~ 234 (364)
T TIGR01242 155 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREVFELAKEKAPSIIFIDEIDAIAAKRVDS 234 (364)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHCCCCCEEEEEEHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHCCC
T ss_conf 89865700757976889999863145512688604444444413316899999998530698168610133354321146
Q ss_pred -----CH---HHHHH---HHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCC
Q ss_conf -----10---33545---55431123421564035432002234566788521222450788978999999998666289
Q gi|254780567|r 123 -----DT---QLFHI---INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 (246)
Q Consensus 123 -----ee---~lf~l---~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i 191 (246)
.| .|+.+ ++-+...+.--+++++..| +...|-+.-==+.--.++++.|+.+-|..||+=|.. ++
T Consensus 235 ~TsGdREV~RTlmQLLAElDGFd~rg~VkviaATNR~---DilDPA~LRPGRFDR~IEVPlP~~~GR~eIlkiHTr--~~ 309 (364)
T TIGR01242 235 STSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRP---DILDPAILRPGRFDRIIEVPLPDFEGRLEILKIHTR--KM 309 (364)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC---HHCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHC--CC
T ss_conf 7787315788999999752488876761688720762---020432148886132573169783220566555210--00
Q ss_pred CCCHHH-HHHHHHCCCCCH-HHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHH
Q ss_conf 798899-999994066798-999999999999999847-78788999999986
Q gi|254780567|r 192 FIDKKL-AAYIVQRMERSL-VFAEKLVDKMDNLALSRG-MGITRSLAAEVLKE 241 (246)
Q Consensus 192 ~l~~~v-~~yl~~r~~Rs~-~~l~~~l~~Ld~~sl~~k-r~ITi~lvk~vL~~ 241 (246)
.+.++| ++.|++=.+.-- .++..+...---.|+... ..||..-..++.++
T Consensus 310 ~la~dVdl~~~A~~TeG~sGAdlKAi~tEAG~~AIR~~r~~vT~~Df~kAv~K 362 (364)
T TIGR01242 310 KLAEDVDLEAIAKLTEGASGADLKAICTEAGMFAIREERDYVTMDDFLKAVEK 362 (364)
T ss_pred CCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 01235687999987478866304234346204777744567669999999873
No 109
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.43 E-value=1.6e-06 Score=59.95 Aligned_cols=164 Identities=18% Similarity=0.149 Sum_probs=91.9
Q ss_pred CCCCCEEECCCHHHHHHHHHHHHCC--CCCEEEEECCCCCCHHHHHHHHHHHHCCC-----CHHHHH---HHHHH-----
Q ss_conf 8845416536189999999851016--78849998787778688999999862762-----013567---64445-----
Q gi|254780567|r 38 ISRDDLLVHSAIEQAVRLIDSWPSW--PSRVVILVGPSGSGKSCLANIWSDKSRST-----RFSNIA---KSLDS----- 102 (246)
Q Consensus 38 ~~~dnFiv~~~N~~A~~~i~~~~~~--~~~~l~i~G~~GsGKTHLl~a~~~~~~~~-----~~~~~~---~~~~~----- 102 (246)
++|++++ ..+.++..+.+.... -.+...++||.|+|||-++.+++..--.. +.+... .....
T Consensus 1 M~f~~ii---Gq~~i~~~L~~~i~~~rl~HAyLF~Gp~G~GK~~~A~~~A~~ll~~~~~~~~~D~~~~~~~~~~~I~vd~ 77 (313)
T PRK05564 1 MSFRTII---GHENIKNRIDNSIIKGKFSHASLIVGEDGIGKSILAKEIANKILGKSEQREYVDIIEYKPINKKSIGVDD 77 (313)
T ss_pred CCHHHCC---CHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCHHH
T ss_conf 9832326---8299999999999879987504327999850999999999998289977889865886332256999899
Q ss_pred -----------HHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHCCCC-CEEEEECCCCCCHHHHHHHHHHHHHHCCEEE
Q ss_conf -----------46666665334332100376-1033545554311234-2156403543200223456678852122245
Q gi|254780567|r 103 -----------ILIDTRKPVLLEDIDLLDFN-DTQLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 (246)
Q Consensus 103 -----------~~~~~~~~i~iddi~~~~~~-ee~lf~l~n~~~~~~~-~iilts~~~p~~~~~~l~DL~SRl~~g~~~~ 169 (246)
.....++++++|+.+.+... ..+|+-++ .+-.. .+++.....|.. .+|-.+||+. .+.
T Consensus 78 IR~l~~~~~~~p~~g~~KV~II~~ae~m~~~AaNALLKtL---EEPP~~t~fIL~t~~~~~---lLpTI~SRCQ---~~~ 148 (313)
T PRK05564 78 IRNIIEEVNKKPYEGDKKVIIIYKSEKMTEQAQNAFLKTI---EEPPKGVFIILLCENLEQ---ILDTIKSRCQ---IYK 148 (313)
T ss_pred HHHHHHHHHHCCCCCCCEEEEECCHHHHCHHHHHHHHHCC---CCCCCCEEEEEEECCHHH---CCCHHHCCCE---EEE
T ss_conf 9999999840862589569998077775899999984550---368998589986498354---7577870653---566
Q ss_pred ECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 078897899999999866628979889999999406679899999999
Q gi|254780567|r 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 (246)
Q Consensus 170 I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~ 217 (246)
+.+++.+.....|.+.+ -.++++....++.-...+++.+..+++
T Consensus 149 f~~l~~~~i~~~L~~~~----~~~~~~~~~~~~~~s~G~~~~a~~~~~ 192 (313)
T PRK05564 149 LNRLSKEDIEKFISYKY----NDIDEENKNSAIAFSDGIPGKVEKFIE 192 (313)
T ss_pred CCCCCHHHHHHHHHHHC----CCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 89989999999999862----589999999999982998799999840
No 110
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.42 E-value=6.9e-06 Score=56.11 Aligned_cols=201 Identities=15% Similarity=0.168 Sum_probs=114.1
Q ss_pred CCCCEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC---------CCHHHHHH-----------
Q ss_conf 8454165361899999998510167884999878777868899999986276---------20135676-----------
Q gi|254780567|r 39 SRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS---------TRFSNIAK----------- 98 (246)
Q Consensus 39 ~~dnFiv~~~N~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~---------~~~~~~~~----------- 98 (246)
..=|-++|- .++.-..++-+.....|.-++.|++|+|||-++..++...-. ..+.....
T Consensus 183 gklDPviGR-~~Ei~r~i~iL~Rr~KNNpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~~Ldl~~LiAGtkyRG 261 (758)
T PRK11034 183 GGIDPLIGR-EKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRG 261 (758)
T ss_pred CCCCCCCCC-HHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCH
T ss_conf 899987384-8999999999976325896021699986999999999999738997655898899845877861686415
Q ss_pred H----H----HHHHHHHHHHHHHHHHHCCCCC---C---HHHHHHHHHHHCCCCCEEEEECCCCCCH-HHHHHH--HHHH
Q ss_conf 4----4----4546666665334332100376---1---0335455543112342156403543200-223456--6788
Q gi|254780567|r 99 S----L----DSILIDTRKPVLLEDIDLLDFN---D---TQLFHIINSIHQYDSSLLMTARTFPVSW-GVCLPD--LCSR 161 (246)
Q Consensus 99 ~----~----~~~~~~~~~~i~iddi~~~~~~---e---e~lf~l~n~~~~~~~~iilts~~~p~~~-~~~l~D--L~SR 161 (246)
. + ........-++.||++|.+-+. . -..-+++--....|.--++.++ .+.+. ..+.+| |.-|
T Consensus 262 efEeRlk~vi~e~~~~~~~ILFIDEiH~ivGaG~~~gg~~DaaNlLKP~LarG~l~~IgaT-T~~EYrk~iekD~AL~RR 340 (758)
T PRK11034 262 DFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGST-TYQEFSNIFEKDRALARR 340 (758)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEC-CHHHHHHCCCCCHHHHHC
T ss_conf 4999999999999857985999804344226887677764678874578746972399943-779987503214788842
Q ss_pred HHHCCEEEECCCCHHHHHHHHHHH----HHHCCCCCCHHHHHHHHHCCCCCH---HHHHHHHHHHHHHH--------HHH
Q ss_conf 521222450788978999999998----666289798899999994066798---99999999999999--------984
Q gi|254780567|r 162 LKAATVVKISLPDDDFLEKVIVKM----FADRQIFIDKKLAAYIVQRMERSL---VFAEKLVDKMDNLA--------LSR 226 (246)
Q Consensus 162 l~~g~~~~I~~pdde~~~~il~k~----~~~r~i~l~~~v~~yl~~r~~Rs~---~~l~~~l~~Ld~~s--------l~~ 226 (246)
|. .+.+++|+.+....||.-. -.-.++.++++++...++-..|-. .---.+++-||..+ ...
T Consensus 341 Fq---~V~V~EPs~e~t~~IL~gl~~~yE~~H~v~~~d~al~~av~Ls~rYi~dr~lPDKAIdllDea~a~~~l~~~~~~ 417 (758)
T PRK11034 341 FQ---KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKR 417 (758)
T ss_pred CC---EEECCCCCHHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 82---653189998999999998999873236957743899999999976502688961999999999888751345663
Q ss_pred CCCCCHHHHHHHHHHHHC
Q ss_conf 778788999999986741
Q gi|254780567|r 227 GMGITRSLAAEVLKETQQ 244 (246)
Q Consensus 227 kr~ITi~lvk~vL~~~~~ 244 (246)
++.|+..-+.+++...-.
T Consensus 418 ~~~v~~~di~~vv~~~t~ 435 (758)
T PRK11034 418 KKTVNVADIESVVARIAR 435 (758)
T ss_pred CCCCCHHHHHHHHHHHHC
T ss_conf 165899999999987503
No 111
>KOG0727 consensus
Probab=98.40 E-value=4.7e-06 Score=57.12 Aligned_cols=177 Identities=15% Similarity=0.219 Sum_probs=101.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH----------------HHHHHHHHHHHHHHHCCCCC---
Q ss_conf 67884999878777868899999986276201356764445----------------46666665334332100376---
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS----------------ILIDTRKPVLLEDIDLLDFN--- 122 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~i~iddi~~~~~~--- 122 (246)
-|-+.+.+|||||+|||-|+.+.++++.+.++...-..+.. ....+..++.+|.++.+...
T Consensus 187 dpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlakenapsiifideidaiatkrfd 266 (408)
T KOG0727 187 DPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFD 266 (408)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHCCCHHEEEECCHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCC
T ss_conf 99862277579997578999998612611144630189999985548389999999876169837986224567664124
Q ss_pred ---------CHHHHHHHHHHH----CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHC
Q ss_conf ---------103354555431----1234215640354320022345667885212224507889789999999986662
Q gi|254780567|r 123 ---------DTQLFHIINSIH----QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 (246)
Q Consensus 123 ---------ee~lf~l~n~~~----~~~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r 189 (246)
+..|..++|... ..+-+++++.+..- .+ .|-|.---+.---++.+-||...++.+........
T Consensus 267 aqtgadrevqril~ellnqmdgfdq~~nvkvimatnrad-tl---dpallrpgrldrkiefplpdrrqkrlvf~titskm 342 (408)
T KOG0727 267 AQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRAD-TL---DPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKM 342 (408)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCC-CC---CHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 444631899999999997514767666558998327555-66---87662876434443577985466522277543102
Q ss_pred CCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHH
Q ss_conf 8979889999999406679899999999999999984778-7889999999867
Q gi|254780567|r 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG-ITRSLAAEVLKET 242 (246)
Q Consensus 190 ~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~-ITi~lvk~vL~~~ 242 (246)
.+.-+-+.-+|+++--.-|-..+..+...---.+...+|- |.-.-..+..+..
T Consensus 343 ~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nryvvl~kd~e~ay~~~ 396 (408)
T KOG0727 343 NLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENRYVVLQKDFEKAYKTV 396 (408)
T ss_pred CCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHH
T ss_conf 678544889874185434346699999997689987625465277799999865
No 112
>KOG0734 consensus
Probab=98.39 E-value=2e-06 Score=59.38 Aligned_cols=193 Identities=19% Similarity=0.267 Sum_probs=117.2
Q ss_pred CCCCCCEEECCCH----HHHHHHHHHHHCCC------CCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH--
Q ss_conf 6884541653618----99999998510167------88499987877786889999998627620135676444546--
Q gi|254780567|r 37 GISRDDLLVHSAI----EQAVRLIDSWPSWP------SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL-- 104 (246)
Q Consensus 37 ~~~~dnFiv~~~N----~~A~~~i~~~~~~~------~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~~~-- 104 (246)
+-+|+|--=++.- ++.+..++.+.+.. -+.+.+.||||.|||-|++|++-+.+--++++.-..++..+
T Consensus 300 nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VG 379 (752)
T KOG0734 300 NVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVG 379 (752)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCEEECCCCCHHHHHHC
T ss_conf 65500214727899999999998609087643147588853876899975569999860556897474166204454220
Q ss_pred --------------HHHHHHHHHHHHHCCCCCC------------HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf --------------6666653343321003761------------03354555431123421564035432002234566
Q gi|254780567|r 105 --------------IDTRKPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158 (246)
Q Consensus 105 --------------~~~~~~i~iddi~~~~~~e------------e~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~DL 158 (246)
..+..++.||.++.+-+.. ..|+--.+.+.++.+-|++.+..-|..++-.+
T Consensus 380 vGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL--- 456 (752)
T KOG0734 380 VGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKAL--- 456 (752)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHH---
T ss_conf 14899999999987349859997200220566786277899989999999842867688669995168745556873---
Q ss_pred HHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCC--CCHHHHHHHHHHHHHH-HHHHCCCCCHHH
Q ss_conf 788521222450788978999999998666289798899999994066--7989999999999999-998477878899
Q gi|254780567|r 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME--RSLVFAEKLVDKMDNL-ALSRGMGITRSL 234 (246)
Q Consensus 159 ~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~--Rs~~~l~~~l~~Ld~~-sl~~kr~ITi~l 234 (246)
.--=+--..+.++.||-.-|..||..+.. ++.++++|=--|+-|-. -+-.++.++++.-.-. +......+|+.-
T Consensus 457 ~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~--ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~VtM~~ 533 (752)
T KOG0734 457 TRPGRFDRHVTVPLPDVRGRTEILKLYLS--KIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAEMVTMKH 533 (752)
T ss_pred CCCCCCCEEEECCCCCCCCHHHHHHHHHH--CCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHH
T ss_conf 48875533674689773328999999983--487656778767226889876578998888999999863740110887
No 113
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=98.38 E-value=2.6e-05 Score=52.53 Aligned_cols=89 Identities=13% Similarity=0.166 Sum_probs=63.7
Q ss_pred HHHHHHHHHHCCCC-C-EEEEECCCCCCH--------HHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 33545554311234-2-156403543200--------2234566788521222450788978999999998666289798
Q gi|254780567|r 125 QLFHIINSIHQYDS-S-LLMTARTFPVSW--------GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194 (246)
Q Consensus 125 ~lf~l~n~~~~~~~-~-iilts~~~p~~~--------~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~ 194 (246)
+-|.++|...++.- + ++++++.-.... ...-.||..|+ +++...|.+.+....|++-.|...++.++
T Consensus 290 EcFsfLnralEs~laPivI~ATNRG~~~IRGTd~~sPHGiP~DlLDRl---lII~T~py~~~ei~~Ii~iRa~~E~v~l~ 366 (395)
T pfam06068 290 ECFSFLNRALESELAPIVILATNRGICTIRGTDIISPHGIPLDLLDRL---LIITTEPYTREEIKQILEIRAQEEGVEIS 366 (395)
T ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCEEECCCCCCCCCCCCHHHHHHE---EEEECCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 899888776505678769998446520352567758889987777302---58856889989999999987776078779
Q ss_pred HHHHHHHHHCCC-CCHHHHHHHH
Q ss_conf 899999994066-7989999999
Q gi|254780567|r 195 KKLAAYIVQRME-RSLVFAEKLV 216 (246)
Q Consensus 195 ~~v~~yl~~r~~-Rs~~~l~~~l 216 (246)
++++++|.+--. .|++.+..++
T Consensus 367 ~~al~~L~~ig~~~SLRYaiqLl 389 (395)
T pfam06068 367 EEALDLLAKIGEETSLRYAIQLL 389 (395)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 89999999865320299999872
No 114
>KOG0726 consensus
Probab=98.36 E-value=1.4e-06 Score=60.39 Aligned_cols=173 Identities=17% Similarity=0.237 Sum_probs=103.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH----------------HHHHHHHHHHHHHHHCCCCC---
Q ss_conf 67884999878777868899999986276201356764445----------------46666665334332100376---
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS----------------ILIDTRKPVLLEDIDLLDFN--- 122 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~i~iddi~~~~~~--- 122 (246)
.|-+.+++||+||.|||-|+.|.+|++.|.++...-..+.. ....+..++.+|.++.+-..
T Consensus 217 kpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyd 296 (440)
T KOG0726 217 KPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYD 296 (440)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCC
T ss_conf 99970588679997536888877245521245565089999873655199999998887529826986400110452134
Q ss_pred ---------CHHHHHHHHHH---HCCCC-CEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHC
Q ss_conf ---------10335455543---11234-215640354320022345667885212224507889789999999986662
Q gi|254780567|r 123 ---------DTQLFHIINSI---HQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 (246)
Q Consensus 123 ---------ee~lf~l~n~~---~~~~~-~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r 189 (246)
|..++.++|.+ ...+. +++++.+ ....+ .|-|.--=+----++.+.||..++..|.+-+-..
T Consensus 297 s~SggerEiQrtmLELLNQldGFdsrgDvKvimATn-rie~L---DPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~- 371 (440)
T KOG0726 297 SNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATN-RIETL---DPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSR- 371 (440)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECC-CCCCC---CHHHCCCCCCCCCCCCCCCCHHHHCEEEEEEECC-
T ss_conf 788507899999999987426866567758997416-53446---7755278754311125797556323156875024-
Q ss_pred CCCCCHHH--HHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHH
Q ss_conf 89798899--9999940667989999999999999998477-878899999998
Q gi|254780567|r 190 QIFIDKKL--AAYIVQRMERSLVFAEKLVDKMDNLALSRGM-GITRSLAAEVLK 240 (246)
Q Consensus 190 ~i~l~~~v--~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr-~ITi~lvk~vL~ 240 (246)
+++.++| -++|..+-+-|-.++..+...---.++...| .+|.+-.++.-+
T Consensus 372 -Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm~vt~~DF~ka~e 424 (440)
T KOG0726 372 -MTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRMKVTMEDFKKAKE 424 (440)
T ss_pred -CCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf -30012466999752013356310888987776899999876215387999999
No 115
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.36 E-value=3.4e-06 Score=57.98 Aligned_cols=22 Identities=32% Similarity=0.629 Sum_probs=12.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q ss_conf 4999878777868899999986
Q gi|254780567|r 66 VVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 66 ~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.+++.||+|+|||.|+.++++.
T Consensus 597 sFlf~GptGvGKTELAKaLAe~ 618 (852)
T TIGR03346 597 SFLFLGPTGVGKTELAKALAEF 618 (852)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8998678877689999999999
No 116
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.33 E-value=1.5e-05 Score=53.96 Aligned_cols=153 Identities=14% Similarity=0.083 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHC-CC-CC-EEEEECCCCCCHHHHHHHHHHHHCCCCH--------------------------HHHHHH
Q ss_conf 8999999985101-67-88-4999878777868899999986276201--------------------------356764
Q gi|254780567|r 49 IEQAVRLIDSWPS-WP-SR-VVILVGPSGSGKSCLANIWSDKSRSTRF--------------------------SNIAKS 99 (246)
Q Consensus 49 N~~A~~~i~~~~~-~~-~~-~l~i~G~~GsGKTHLl~a~~~~~~~~~~--------------------------~~~~~~ 99 (246)
++.+...+..|.. |. .. .+.++||+|+|||.++.++++....... ......
T Consensus 6 ~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~ 85 (325)
T COG0470 6 WQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLR 85 (325)
T ss_pred CHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCC
T ss_conf 23589999999986588876100379999978999999999965866433455200224443202568865997732133
Q ss_pred HH---HH-------------HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 44---54-------------666666533433210037610335455543112342156403543200223456678852
Q gi|254780567|r 100 LD---SI-------------LIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 (246)
Q Consensus 100 ~~---~~-------------~~~~~~~i~iddi~~~~~~ee~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~ 163 (246)
.. .. ....++.+++|+.+.+..+-..-+--.-.....+..++++++ .|.. .++-++||+.
T Consensus 86 ~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n-~~~~---il~tI~SRc~ 161 (325)
T COG0470 86 KIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITN-DPSK---ILPTIRSRCQ 161 (325)
T ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEEEC-CHHH---CHHHHHHHEE
T ss_conf 33006999999998604465667726999732032698888767543324888716999749-8555---6478775607
Q ss_pred HCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 12224507889789999999986662897988999999940667989999999999
Q gi|254780567|r 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 (246)
Q Consensus 164 ~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~L 219 (246)
.+.+.+|+....+.... ++.++.++.....+.+...+.+..+
T Consensus 162 ---~i~f~~~~~~~~i~~~e-----------~~~l~~i~~~~~gd~r~~i~~lq~~ 203 (325)
T COG0470 162 ---RIRFKPPSRLEAIAWLE-----------DQGLEEIAAVAEGDARKAINPLQAL 203 (325)
T ss_pred ---EEECCCCCHHHHHHHHH-----------HHHHHHHHHHHCCHHHHHCCHHHHH
T ss_conf ---88767741889999850-----------7579999987040688734899999
No 117
>KOG2004 consensus
Probab=98.31 E-value=4.2e-06 Score=57.46 Aligned_cols=152 Identities=18% Similarity=0.278 Sum_probs=95.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH-----------------HHH-------HHHHHHHHHHHC
Q ss_conf 78849998787778688999999862762013567644454-----------------666-------666533433210
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI-----------------LID-------TRKPVLLEDIDL 118 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~~-----------------~~~-------~~~~i~iddi~~ 118 (246)
.++.+.++||||+|||.++.++|...+..|+........+. .+. ..-.+.+|.++.
T Consensus 437 qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDK 516 (906)
T KOG2004 437 QGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENPLILIDEVDK 516 (906)
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHCCCCCEEEEEHHHH
T ss_conf 88379986899877321899999984874699853663427764254211001488489999986177886588532234
Q ss_pred CCC----CC-HH-------------HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHH
Q ss_conf 037----61-03-------------3545554311234215640354320022345667885212224507889789999
Q gi|254780567|r 119 LDF----ND-TQ-------------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 (246)
Q Consensus 119 ~~~----~e-e~-------------lf~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~ 180 (246)
+.. +- -+ +=|.+|--.. -.+++|.|+... ++.+-+-|+-|+. ++++.--.-+++..
T Consensus 517 lG~g~qGDPasALLElLDPEQNanFlDHYLdVp~D-LSkVLFicTAN~--idtIP~pLlDRME---vIelsGYv~eEKv~ 590 (906)
T KOG2004 517 LGSGHQGDPASALLELLDPEQNANFLDHYLDVPVD-LSKVLFICTANV--IDTIPPPLLDRME---VIELSGYVAEEKVK 590 (906)
T ss_pred HCCCCCCCHHHHHHHHCCHHHCCCHHHHCCCCCCC-HHHEEEEEECCC--CCCCCHHHHHHHH---EEECCCCCHHHHHH
T ss_conf 17887798689998743965355345420266421-110688985364--4569856641223---22036722798999
Q ss_pred HHHHHHH----------HCCCCCCHHHHHHHHHCCCCC--HHHHHHHHHHHH
Q ss_conf 9999866----------628979889999999406679--899999999999
Q gi|254780567|r 181 VIVKMFA----------DRQIFIDKKLAAYIVQRMERS--LVFAEKLVDKMD 220 (246)
Q Consensus 181 il~k~~~----------~r~i~l~~~v~~yl~~r~~Rs--~~~l~~~l~~Ld 220 (246)
|-..+.- ..++.++++++.-|++|+.|. ++.+..-++++-
T Consensus 591 IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrEaGVRnLqk~iekI~ 642 (906)
T KOG2004 591 IAERYLIPQALKDCGLKPEQVKISDDALLALIERYCREAGVRNLQKQIEKIC 642 (906)
T ss_pred HHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9998412578987499878658629999999999988876778999999999
No 118
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.29 E-value=5.6e-06 Score=56.67 Aligned_cols=159 Identities=14% Similarity=0.114 Sum_probs=67.4
Q ss_pred CCCEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHC----------CCCHH-H-HHH--------H
Q ss_conf 45416536189999999851016788499987877786889999998627----------62013-5-676--------4
Q gi|254780567|r 40 RDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR----------STRFS-N-IAK--------S 99 (246)
Q Consensus 40 ~dnFiv~~~N~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~----------~~~~~-~-~~~--------~ 99 (246)
.=|-++|- ..+.-..++-+.....|.-+|.|+||+|||-++..++...- ...+. . ... .
T Consensus 177 klDpvIGR-d~EI~r~i~IL~RR~KNNpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~sLDl~~L~AGtkyRGe 255 (823)
T CHL00095 177 NLDPVIGR-DKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIANRDVPDILEDKLVLTLDIGLLLAGTKYRGE 255 (823)
T ss_pred CCCCCCCC-HHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEHHHHHHCCCCCHH
T ss_conf 99987595-69999999999773248850237999879999999999760889986875993688428877533422267
Q ss_pred H-------HH-HHHHHHHHHHHHHHHCCCCC--CH---HHHHHHHHHHCCCCCEEEEECCCCCCH-HHHHH--HHHHHHH
Q ss_conf 4-------45-46666665334332100376--10---335455543112342156403543200-22345--6678852
Q gi|254780567|r 100 L-------DS-ILIDTRKPVLLEDIDLLDFN--DT---QLFHIINSIHQYDSSLLMTARTFPVSW-GVCLP--DLCSRLK 163 (246)
Q Consensus 100 ~-------~~-~~~~~~~~i~iddi~~~~~~--ee---~lf~l~n~~~~~~~~iilts~~~p~~~-~~~l~--DL~SRl~ 163 (246)
+ .. ......-++.||++|.+-|. .+ ...+++--....|.--++.+ ..+.+. ..+.+ .|.-||.
T Consensus 256 FEeRlk~il~ei~~~~~iILFIDEiHtlvGaG~~~g~~DaaNlLKPaLarGel~~IGA-TT~~EYrk~iEkD~AL~RRFq 334 (823)
T CHL00095 256 FEERIKKIMDEIKKANNIILVIDEIHTLIGAGAAEGAIDAANILKPALARGKLQCIGA-TTLEEYRKHIEKDPALERRFQ 334 (823)
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEE-CCHHHHHHHHHCCHHHHHHCC
T ss_conf 9999999999998579869997351653288976664317887657864898669970-788999998530588996268
Q ss_pred HCCEEEECCCCHHHHHHHHHHHHH----HCCCCCCHHHHHHHHH
Q ss_conf 122245078897899999999866----6289798899999994
Q gi|254780567|r 164 AATVVKISLPDDDFLEKVIVKMFA----DRQIFIDKKLAAYIVQ 203 (246)
Q Consensus 164 ~g~~~~I~~pdde~~~~il~k~~~----~r~i~l~~~v~~yl~~ 203 (246)
.+.|++|+.+....||+.... -.++.++++++...+.
T Consensus 335 ---~V~V~EPs~e~t~~IL~gl~~~yE~~H~V~i~d~Ai~aav~ 375 (823)
T CHL00095 335 ---PVYVGEPSVEETIEILLGLRDRYEKHHNLSISDKALEAAAK 375 (823)
T ss_pred ---CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf ---41028998799999999999999875088504789999999
No 119
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.29 E-value=1.1e-05 Score=54.81 Aligned_cols=168 Identities=18% Similarity=0.227 Sum_probs=96.7
Q ss_pred CCCEEECCCHHHHHHHHHHHHCC-C-CCEEEEECCCCCCHHHHHHHHHHHHCCC--------------------CHHHHH
Q ss_conf 45416536189999999851016-7-8849998787778688999999862762--------------------013567
Q gi|254780567|r 40 RDDLLVHSAIEQAVRLIDSWPSW-P-SRVVILVGPSGSGKSCLANIWSDKSRST--------------------RFSNIA 97 (246)
Q Consensus 40 ~dnFiv~~~N~~A~~~i~~~~~~-~-~~~l~i~G~~GsGKTHLl~a~~~~~~~~--------------------~~~~~~ 97 (246)
|++.+ |. ..++..+.+.... . .+...++||.|+||+.++..++..--.. ++...+
T Consensus 3 F~~ii-Gq--~~~~~~L~~ai~~~rl~hAyLF~Gp~G~GK~~~A~~fa~~Ll~~~~~~~~~~~ri~~~nHPDl~~i~P~~ 79 (314)
T PRK07399 3 FANLI-GQ--PLAIELLTAAIEQNRIAPAYLFAGPEGVGRKLAALRFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTY 79 (314)
T ss_pred CCCCC-CC--HHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCEEEEECCC
T ss_conf 33125-94--9999999999985996744877899983299999999999857899997665587518999778860562
Q ss_pred --------------------------HHHHH---------HHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHCCCCCEE
Q ss_conf --------------------------64445---------46666665334332100376-1033545554311234215
Q gi|254780567|r 98 --------------------------KSLDS---------ILIDTRKPVLLEDIDLLDFN-DTQLFHIINSIHQYDSSLL 141 (246)
Q Consensus 98 --------------------------~~~~~---------~~~~~~~~i~iddi~~~~~~-ee~lf~l~n~~~~~~~~ii 141 (246)
..... ......+++++|+.+.++.. ..+|+-++.+ =.++ .++
T Consensus 80 ~~~g~~~~~~~~~~~~~~~~~~~~I~idqIR~l~~~l~~~p~~~~~kVvII~~ae~m~~~AaNaLLKtLEE-P~~~-~fI 157 (314)
T PRK07399 80 QHQGKLITASEAEEAGLKRKSPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEE-PGNG-TLI 157 (314)
T ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCHHHCCHHHHHHHHHHHCC-CCCC-EEE
T ss_conf 00345455778987653026877787999999999973188568847999889787199999999986147-8785-699
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 64035432002234566788521222450788978999999998666289798899999994066798999999999999
Q gi|254780567|r 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 (246)
Q Consensus 142 lts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~ 221 (246)
+.+. .| .-.+|-++||+. .+.+.+++++....+|.+........+..+.+-.++ ..|++.+....+.++.
T Consensus 158 Lit~-~~---~~lLpTI~SRCQ---~i~F~~l~~~~i~~~L~~~~~~~~~~~~~~~l~~~A---~GspG~a~~~~~~~~~ 227 (314)
T PRK07399 158 LIAP-SP---ESLLPTIVSRCQ---IIPFYRLSDEQLEQVLKRLGDNINEILDHPELLALA---QGSPGAAIANIEQLQS 227 (314)
T ss_pred EEEC-CH---HHCCHHHHCCCE---EEECCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHH---CCCHHHHHHHHHHHHH
T ss_conf 9979-93---649146641875---633899899999999997166433102789999881---7997999999999874
Q ss_pred H
Q ss_conf 9
Q gi|254780567|r 222 L 222 (246)
Q Consensus 222 ~ 222 (246)
.
T Consensus 228 i 228 (314)
T PRK07399 228 I 228 (314)
T ss_pred C
T ss_conf 8
No 120
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.29 E-value=5.2e-06 Score=56.89 Aligned_cols=44 Identities=20% Similarity=0.306 Sum_probs=17.8
Q ss_pred CEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 416536189999999851016788499987877786889999998
Q gi|254780567|r 42 DLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 (246)
Q Consensus 42 nFiv~~~N~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~ 86 (246)
|-++|- .++.-..++-+.....|.-+|.|+||+|||-++..+|.
T Consensus 178 dpvIGR-d~EI~r~i~IL~RR~KNNpiLvGepGVGKTAIvEGLA~ 221 (857)
T PRK10865 178 DPVIGR-DEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQ 221 (857)
T ss_pred CCCCCC-HHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHH
T ss_conf 988582-99999999997025789975878999889999999999
No 121
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.28 E-value=6.8e-06 Score=56.13 Aligned_cols=142 Identities=15% Similarity=0.253 Sum_probs=79.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCHH--HHHH------------------------HHHHHHHHHHHHHHHHHH
Q ss_conf 78849998787778688999999862762013--5676------------------------444546666665334332
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS--NIAK------------------------SLDSILIDTRKPVLLEDI 116 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~--~~~~------------------------~~~~~~~~~~~~i~iddi 116 (246)
|...+++.||+|+|||.|+.++++......+. +... .+.......+.++.+|++
T Consensus 487 PigsFlf~GPTGVGKTElak~LA~~L~~~lir~DMSEy~e~hsvsrLiGaPPGYVGy~eGG~Lte~Vr~~PysVvL~DEI 566 (758)
T PRK11034 487 PVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEI 566 (758)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCEEEEEHHH
T ss_conf 70589997899877799999999998667721426653120147774489986667677770128787398779973367
Q ss_pred HCCCCCC-HHHHHHHHHHH----------CCCCCEEEEECCCCCCH---------------------HHHHHHHHHHHHH
Q ss_conf 1003761-03354555431----------12342156403543200---------------------2234566788521
Q gi|254780567|r 117 DLLDFND-TQLFHIINSIH----------QYDSSLLMTARTFPVSW---------------------GVCLPDLCSRLKA 164 (246)
Q Consensus 117 ~~~~~~e-e~lf~l~n~~~----------~~~~~iilts~~~p~~~---------------------~~~l~DL~SRl~~ 164 (246)
+...-+- ..|+.+++.-. -.+.-+++||+.-..++ .++.|.+..|+-.
T Consensus 567 EKAhpdV~nilLQvlD~G~LtD~~Gr~vdF~NtiIImTSN~Ga~~~~~~~~gf~~~~~~~~~~~~l~~~F~PEFlNRiD~ 646 (758)
T PRK11034 567 EKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDN 646 (758)
T ss_pred HHHCHHHHHHHHHHCCCCCCCCCCCCEEECEEEEEEEECCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHCCE
T ss_conf 56398999988732377830179999884400199982561748786421475542035999999995479867723674
Q ss_pred CCEEEECCCCHHHHHHHHHHH-------HHHCCCC--CCHHHHHHHHHCCC
Q ss_conf 222450788978999999998-------6662897--98899999994066
Q gi|254780567|r 165 ATVVKISLPDDDFLEKVIVKM-------FADRQIF--IDKKLAAYIVQRME 206 (246)
Q Consensus 165 g~~~~I~~pdde~~~~il~k~-------~~~r~i~--l~~~v~~yl~~r~~ 206 (246)
++...|++.+.+..|+.+. +..+++. +++++.+||+++--
T Consensus 647 --ii~F~~L~~~~l~~Iv~~~l~~l~~rL~~~~i~l~~~~~a~~~l~~~gy 695 (758)
T PRK11034 647 --IIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGY 695 (758)
T ss_pred --EEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHCC
T ss_conf --7863889999999999999999999999789859988999999998488
No 122
>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=98.26 E-value=1.4e-06 Score=60.43 Aligned_cols=97 Identities=21% Similarity=0.306 Sum_probs=55.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCHHHHHH------------HHHHH----HHHHHHHHHHHHHHCCCCCC-------
Q ss_conf 99987877786889999998627620135676------------44454----66666653343321003761-------
Q gi|254780567|r 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAK------------SLDSI----LIDTRKPVLLEDIDLLDFND------- 123 (246)
Q Consensus 67 l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~------------~~~~~----~~~~~~~i~iddi~~~~~~e------- 123 (246)
+.+|||||+|||.+++++|++.+..++..... ..... ......++++|+++.+....
T Consensus 1 iLl~GppGtGKT~~a~~la~~~~~~~~~v~~~~~~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDe~d~l~~~~~~~~~~~ 80 (131)
T pfam00004 1 LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCVIFIDEIDALAGSRGSGGDSE 80 (131)
T ss_pred CEEECCCCCCHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHHHHCCCCCCCCCC
T ss_conf 98789999999999999999978985332420122233450688899999999974991898311677751678888875
Q ss_pred -----HHHHHHHHHHHCCCCC-EEEEECCCCCCHHHHHHHHH-HHHHHCC
Q ss_conf -----0335455543112342-15640354320022345667-8852122
Q gi|254780567|r 124 -----TQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLC-SRLKAAT 166 (246)
Q Consensus 124 -----e~lf~l~n~~~~~~~~-iilts~~~p~~~~~~l~DL~-SRl~~g~ 166 (246)
..|...++.......+ +++.+...|..++ +.++ |||..-.
T Consensus 81 ~~~~~~~ll~~ld~~~~~~~~v~~I~tTN~~~~ld---~al~r~Rfd~~i 127 (131)
T pfam00004 81 SRRVVNQLLTELDGFTSSLSKVIVIAATNRPDKLD---PALLRGRFDRII 127 (131)
T ss_pred CHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHCC---HHHHCCCCEEEE
T ss_conf 13268789999850224688769999759904499---779628332899
No 123
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.22 E-value=1.5e-05 Score=53.96 Aligned_cols=170 Identities=15% Similarity=0.194 Sum_probs=89.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH-----CCCCHHHHHH------------------------HHHHHHHHHHHHHHH
Q ss_conf 78849998787778688999999862-----7620135676------------------------444546666665334
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDKS-----RSTRFSNIAK------------------------SLDSILIDTRKPVLL 113 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~~-----~~~~~~~~~~------------------------~~~~~~~~~~~~i~i 113 (246)
|...+++.||+|+|||-|+.+++... .-+.+++... -+.......+.++.+
T Consensus 597 PiGsFLFlGPTGVGKTElAK~LA~~LF~~e~~liriDMSEy~E~hsVSrLiGaPPGYVGy~eGG~LTeaVRr~PySVvLf 676 (857)
T PRK10865 597 PIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILL 676 (857)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHCCHHHEEEECCHHHCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCEEEEE
T ss_conf 73899986898788899999999998389334256253321130127675589987667577881109998198778863
Q ss_pred HHHHCCCCC-CHHHHHHHHHHH----------CCCCCEEEEECCCCCCH---------------------HHHHHHHHHH
Q ss_conf 332100376-103354555431----------12342156403543200---------------------2234566788
Q gi|254780567|r 114 EDIDLLDFN-DTQLFHIINSIH----------QYDSSLLMTARTFPVSW---------------------GVCLPDLCSR 161 (246)
Q Consensus 114 ddi~~~~~~-ee~lf~l~n~~~----------~~~~~iilts~~~p~~~---------------------~~~l~DL~SR 161 (246)
|.++...-+ ...|+.+++.-. -.+.-+++||+.-...+ .++.|.+.-|
T Consensus 677 DEIEKAHpdV~nilLQvlD~G~LtD~~Gr~vdF~NtIIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~~l~~~F~PEFlnR 756 (857)
T PRK10865 677 DEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINR 756 (857)
T ss_pred HHHHHHCHHHHHHHHHHHCCCEEECCCCCEEEEEEEEEEECCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHC
T ss_conf 25766385899999987036832079998885133489964623369998650655668899999999986479888823
Q ss_pred HHHCCEEEECCCCHHHHHHHHHHH-------HHHCCCC--CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 521222450788978999999998-------6662897--9889999999406679899999999999999984778788
Q gi|254780567|r 162 LKAATVVKISLPDDDFLEKVIVKM-------FADRQIF--IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232 (246)
Q Consensus 162 l~~g~~~~I~~pdde~~~~il~k~-------~~~r~i~--l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~ITi 232 (246)
+-. ++...|++.+.+..|+... +..+|+. +++++.+||+++---.-..++.+-..| .+.|.-
T Consensus 757 iD~--iv~F~pL~~~~l~~Iv~~~l~~l~~rL~~~~i~l~~~~~a~~~l~~~gyd~~~GARpl~r~I-------~~~i~~ 827 (857)
T PRK10865 757 IDE--VVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAI-------QQQIEN 827 (857)
T ss_pred CCE--EEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCCCCCHHHHHHHH-------HHHHHH
T ss_conf 784--89827899999999999999999999997798499888999999984889774713789999-------999889
Q ss_pred HHHHHHHHH
Q ss_conf 999999986
Q gi|254780567|r 233 SLAAEVLKE 241 (246)
Q Consensus 233 ~lvk~vL~~ 241 (246)
|+++.+|..
T Consensus 828 ~ls~~il~g 836 (857)
T PRK10865 828 PLAQQILSG 836 (857)
T ss_pred HHHHHHHCC
T ss_conf 999999728
No 124
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.21 E-value=2e-05 Score=53.30 Aligned_cols=160 Identities=20% Similarity=0.207 Sum_probs=89.3
Q ss_pred EECCCHHHHHHHH-HHHHCCC-CCEEEEECCCCCCHHHHHHHHHHHHCCCC----------HHHHH--------------
Q ss_conf 6536189999999-8510167-88499987877786889999998627620----------13567--------------
Q gi|254780567|r 44 LVHSAIEQAVRLI-DSWPSWP-SRVVILVGPSGSGKSCLANIWSDKSRSTR----------FSNIA-------------- 97 (246)
Q Consensus 44 iv~~~N~~A~~~i-~~~~~~~-~~~l~i~G~~GsGKTHLl~a~~~~~~~~~----------~~~~~-------------- 97 (246)
++|... +.+.+ ..+..+- .....++||.|+|||.++.++++..-+.. ..+..
T Consensus 19 liGqe~--~~~~L~~a~~~grl~HA~Lf~Gp~GiGK~tlA~~~A~~ll~~~~~~~~~~~~~~~~l~~~~~~p~~r~i~~~ 96 (363)
T PRK07471 19 LFGHAA--AEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDAVFPPPASLAVDPDHPVARRIAAG 96 (363)
T ss_pred CCCHHH--HHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHCC
T ss_conf 168199--999999999859976458767999818899999999998579997777767870531258777289999526
Q ss_pred ------------------------HHHHH---------HHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHCCCC-CEEE
Q ss_conf ------------------------64445---------46666665334332100376-1033545554311234-2156
Q gi|254780567|r 98 ------------------------KSLDS---------ILIDTRKPVLLEDIDLLDFN-DTQLFHIINSIHQYDS-SLLM 142 (246)
Q Consensus 98 ------------------------~~~~~---------~~~~~~~~i~iddi~~~~~~-ee~lf~l~n~~~~~~~-~iil 142 (246)
..... .....++++++|+.+.++.. ...|+-++ .+-.. .+++
T Consensus 97 ~hpdl~~i~r~~d~k~~~~~~~I~Vd~iR~l~~~~~~~p~~g~~kV~IId~ad~mn~~aaNALLK~L---EEPP~~t~fi 173 (363)
T PRK07471 97 AHGGLLTLERSWNEKGKRLRTVITVDEVRETIGFFGLTAAEGGWRVVIVDTADEMNANAANALLKVL---EEPPARSLLL 173 (363)
T ss_pred CCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHCHHHHHHHHHHH---CCCCCCEEEE
T ss_conf 9998466762001133321244539999999999724852489669998687873889999999972---1589883899
Q ss_pred EECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 403543200223456678852122245078897899999999866628979889999999406679899999999
Q gi|254780567|r 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 (246)
Q Consensus 143 ts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~ 217 (246)
..+..|.. .+|-.+||+. .+.+.|++++.+...|.. ..+...+++.+.+++.-...|++.+..+++
T Consensus 174 Lit~~~~~---llpTI~SRCq---~~~~~~l~~~~~~~~L~~---~~~~~~~~~~~~~la~~a~Gs~~~Al~l~~ 239 (363)
T PRK07471 174 LVSHAPAR---LLPTIRSRCR---KLRLRPLAPEDVIAALAE---AGGPALDDAELAALAALAEGSVGRALRLAG 239 (363)
T ss_pred EEECCHHH---CHHHHHHHCC---CCCCCCCCHHHHHHHHHH---HCCCCCCHHHHHHHHHHCCCCHHHHHHHHC
T ss_conf 86399777---7799997352---425899599999999998---438999989999999975899999998747
No 125
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=98.19 E-value=1.6e-05 Score=53.82 Aligned_cols=150 Identities=16% Similarity=0.260 Sum_probs=97.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHH------------HH----HHHHHHHHHHHHHHHCCCCC---C
Q ss_conf 78849998787778688999999862762013567644------------45----46666665334332100376---1
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL------------DS----ILIDTRKPVLLEDIDLLDFN---D 123 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~------------~~----~~~~~~~~i~iddi~~~~~~---e 123 (246)
|-+.+.+|||||+|||-|+.+.+.++.+.++...-... .. ....+...+.+|.++.+.-. .
T Consensus 574 PP~Gvll~GPPGtGktllakava~es~anfi~v~GPe~lskWvGese~~ir~if~~arq~aP~~~f~deidaiaP~rG~~ 653 (980)
T TIGR01243 574 PPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGAS 653 (980)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEECCCHHHHHHHCHHHHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCC
T ss_conf 99734874689861688888774014564677407312234403247999999998641287378730211105412442
Q ss_pred -----------HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCC
Q ss_conf -----------033545554311234215640354320022345667885212224507889789999999986662897
Q gi|254780567|r 124 -----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 (246)
Q Consensus 124 -----------e~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~ 192 (246)
..++.-++.+.+...-+++++...|.-++ |-|.---+.--++-++.||.+.+..|.+-+ .+.+.
T Consensus 654 ~~~~~vtd~~~nqll~e~dG~~~~~~vvvi~atnrPdi~d---PallrPGr~dr~i~vP~Pd~~ar~~ifk~h--t~~~~ 728 (980)
T TIGR01243 654 LDEKGVTDRIVNQLLTELDGLEELSDVVVIAATNRPDILD---PALLRPGRLDRLILVPAPDEEARLEIFKIH--TRSMP 728 (980)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCC---CCCCCCCCCCEEEEECCCCHHHHHHHHHHH--HCCCC
T ss_conf 1001026899999998640443436658986158874236---100488741216860598556767676553--11135
Q ss_pred CCHHH-HHHHHHCCCCCHHHHHHHHH
Q ss_conf 98899-99999406679899999999
Q gi|254780567|r 193 IDKKL-AAYIVQRMERSLVFAEKLVD 217 (246)
Q Consensus 193 l~~~v-~~yl~~r~~Rs~~~l~~~l~ 217 (246)
+.+|| ++-|+++.+.--+.=..++.
T Consensus 729 l~~dv~l~~la~~teGytGadi~a~~ 754 (980)
T TIGR01243 729 LAEDVDLEELAKKTEGYTGADIEAVV 754 (980)
T ss_pred CCCCCCHHHHHHHHCCCCCHHHHHHH
T ss_conf 30134389998651687632299999
No 126
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.18 E-value=1.2e-05 Score=54.61 Aligned_cols=168 Identities=17% Similarity=0.215 Sum_probs=89.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHC-----CCCHHHHH------------------------HHHHHHHHHHHHHHHH
Q ss_conf 788499987877786889999998627-----62013567------------------------6444546666665334
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDKSR-----STRFSNIA------------------------KSLDSILIDTRKPVLL 113 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~~~-----~~~~~~~~------------------------~~~~~~~~~~~~~i~i 113 (246)
|...+++.||+|+|||.|+.+++...- -+.+++.. .-+.......+.++.+
T Consensus 538 PigsFlf~GPTGvGKTElAK~LA~~LFg~e~~liR~DMSEy~E~hsvsrLIGaPPGYVGy~eGG~LTeaVrr~PysVvLf 617 (823)
T CHL00095 538 PIASFIFCGPTGVGKTELTKALASYFFGSEEAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLF 617 (823)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCEEEEE
T ss_conf 74689987899887799999999997478202588535101554207674589987667787882019887199869986
Q ss_pred HHHHCCCCC-CHHHHHHHHHHH----------CCCCCEEEEECCCCCCH-------------------------------
Q ss_conf 332100376-103354555431----------12342156403543200-------------------------------
Q gi|254780567|r 114 EDIDLLDFN-DTQLFHIINSIH----------QYDSSLLMTARTFPVSW------------------------------- 151 (246)
Q Consensus 114 ddi~~~~~~-ee~lf~l~n~~~----------~~~~~iilts~~~p~~~------------------------------- 151 (246)
|.+....-+ -..|+.+++.-. -.+.-+++||+.-...+
T Consensus 618 DEIEKAHpdV~nilLQvlDdG~LtD~~Gr~vdF~NtIIImTSNlGs~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~v~ 697 (823)
T CHL00095 618 DEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIEKGGGSLGFKLLEDGTKLDEKQYKRLSNLVN 697 (823)
T ss_pred CHHHHCCHHHHHHHHHHCCCCCCCCCCCCEEECEEEEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 21311388999988765168843489999884310399971650558887413443433344543220235899999999
Q ss_pred ----HHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHH-------HHHCCCC--CCHHHHHHHHHCCCCC---HHHHHHH
Q ss_conf ----2234566788521222450788978999999998-------6662897--9889999999406679---8999999
Q gi|254780567|r 152 ----GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM-------FADRQIF--IDKKLAAYIVQRMERS---LVFAEKL 215 (246)
Q Consensus 152 ----~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~-------~~~r~i~--l~~~v~~yl~~r~~Rs---~~~l~~~ 215 (246)
.++.|.+..|+-. ++...|++.+.+..|+... +..+++. +++++.+||++.--.. .+-+..+
T Consensus 698 ~~l~~~F~PEFlnRiDe--ii~F~~L~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~a~~~l~~~gy~~~~GARpl~R~ 775 (823)
T CHL00095 698 EELKQYFRPEFLNRLDE--IIVFRPLTKDEVWEIAEIMLKELFKRLNNQGIQLEVDERFKTLLAKEGYNPLYGARPLRRA 775 (823)
T ss_pred HHHHHHCCHHHHHHCCE--EEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 99984379878732782--7861899999999999999999999999689859988899999999587977681368899
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 999999999847787889999999867
Q gi|254780567|r 216 VDKMDNLALSRGMGITRSLAAEVLKET 242 (246)
Q Consensus 216 l~~Ld~~sl~~kr~ITi~lvk~vL~~~ 242 (246)
+.+ .|.-|+++.+|...
T Consensus 776 I~~----------~i~~~ls~~il~g~ 792 (823)
T CHL00095 776 IMR----------LLEDPLAEEVLSFK 792 (823)
T ss_pred HHH----------HHHHHHHHHHHCCC
T ss_conf 999----------98899999997488
No 127
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=1.9e-05 Score=53.38 Aligned_cols=171 Identities=16% Similarity=0.246 Sum_probs=89.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCC-----CCHHHHHHH------------------------HHHHHHHHHHHHH
Q ss_conf 67884999878777868899999986276-----201356764------------------------4454666666533
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKS------------------------LDSILIDTRKPVL 112 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~~~~-----~~~~~~~~~------------------------~~~~~~~~~~~i~ 112 (246)
.|...+++-||+|+|||.|+.+++..... ..+++.... +....-..+..+.
T Consensus 519 rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViL 598 (786)
T COG0542 519 RPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVIL 598 (786)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHCCCCCCCEECCCCCHHHHHHCCCCEEEE
T ss_conf 87357886678865699999999999659974445545687777877998727999872006554003766069986888
Q ss_pred HHHHHCCCCCC-HHHHHHHHHH----------HCCCCCEEEEECCCCCCHH------------------------HHHHH
Q ss_conf 43321003761-0335455543----------1123421564035432002------------------------23456
Q gi|254780567|r 113 LEDIDLLDFND-TQLFHIINSI----------HQYDSSLLMTARTFPVSWG------------------------VCLPD 157 (246)
Q Consensus 113 iddi~~~~~~e-e~lf~l~n~~----------~~~~~~iilts~~~p~~~~------------------------~~l~D 157 (246)
+|.+....-+- ..|+..++.- .-.+.-+++||+.-...+. ++.|.
T Consensus 599 lDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PE 678 (786)
T COG0542 599 LDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPE 678 (786)
T ss_pred ECHHHHCCHHHHHHHHHHHCCCCEECCCCCEEECCEEEEEEECCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHH
T ss_conf 41264408899999999846780554899888430028998450265989753134321004678899999998538998
Q ss_pred HHHHHHHCCEEEECCCCHHHHHHHHHHHHH-------HCC--CCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 678852122245078897899999999866-------628--97988999999940667989999999999999998477
Q gi|254780567|r 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFA-------DRQ--IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228 (246)
Q Consensus 158 L~SRl~~g~~~~I~~pdde~~~~il~k~~~-------~r~--i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr 228 (246)
+.-|+-. ++...+++.+.+..|+..+.. .++ +.+++++.+||+++--.....++.+-..|.+.
T Consensus 679 FLNRid~--II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~------ 750 (786)
T COG0542 679 FLNRIDE--IIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQE------ 750 (786)
T ss_pred HHHHCCC--EEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHH------
T ss_conf 9851261--78506799899999999999999999986895599888999999996468776736799999999------
Q ss_pred CCCHHHHHHHHHH
Q ss_conf 8788999999986
Q gi|254780567|r 229 GITRSLAAEVLKE 241 (246)
Q Consensus 229 ~ITi~lvk~vL~~ 241 (246)
|--++++.+|..
T Consensus 751 -i~~~La~~iL~~ 762 (786)
T COG0542 751 -IEDPLADEILFG 762 (786)
T ss_pred -HHHHHHHHHHHC
T ss_conf -989999999846
No 128
>pfam00931 NB-ARC NB-ARC domain.
Probab=98.14 E-value=5.4e-05 Score=50.63 Aligned_cols=141 Identities=16% Similarity=0.152 Sum_probs=71.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHC------CCCHHHHHH-------------HH----------HHH--------HH
Q ss_conf 788499987877786889999998627------620135676-------------44----------454--------66
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDKSR------STRFSNIAK-------------SL----------DSI--------LI 105 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~~~------~~~~~~~~~-------------~~----------~~~--------~~ 105 (246)
.-+.+-|||..|+|||.|++.+.++.. .+.+..... .+ ... .+
T Consensus 18 ~~~vI~I~G~gGiGKTtLA~~v~~~~~i~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~l~~~l~~~L 97 (285)
T pfam00931 18 NLGVVGIVGMGGVGKTTLAKQIYNDDSVGGHFDSVAWVVVSKTYTEFRLQKDILQELGLDDSDWVEKNESELAVKIKEAL 97 (285)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHCCHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 95399988999563999999997165565059838999979766689999999998566654555578999999999997
Q ss_pred -HHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHH-HCCEEEECCCCHHHHHHHHH
Q ss_conf -6666533433210037610335455543112342156403543200223456678852-12224507889789999999
Q gi|254780567|r 106 -DTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK-AATVVKISLPDDDFLEKVIV 183 (246)
Q Consensus 106 -~~~~~i~iddi~~~~~~ee~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~-~g~~~~I~~pdde~~~~il~ 183 (246)
...-++++||+-....+ +.+...+.. ...|.++|+|++.. +....+. ...++++++++++.-..++.
T Consensus 98 ~~kr~LiVLDDVw~~~~~-~~l~~~~~~-~~~gSrIIvTTR~~---------~V~~~~~~~~~~~~l~~L~~~es~~Lf~ 166 (285)
T pfam00931 98 LRKRFLLVLDDVWEKNDW-DKIGVPFPD-GENGSRVIVTTRSE---------SVAGRMGGTSKPHEVESLEPEESWELFS 166 (285)
T ss_pred CCCCEEEEECCCCCHHHH-HHHHCCCCC-CCCCCEEEEECCCH---------HHHHHCCCCCCEEECCCCCHHHHHHHHH
T ss_conf 279669996388878999-997345757-89982799855758---------9998737888347616898799999999
Q ss_pred HHHHHCCCCCCH---HHHHHHHHCCCCCHHHHHH
Q ss_conf 986662897988---9999999406679899999
Q gi|254780567|r 184 KMFADRQIFIDK---KLAAYIVQRMERSLVFAEK 214 (246)
Q Consensus 184 k~~~~r~i~l~~---~v~~yl~~r~~Rs~~~l~~ 214 (246)
+++.......++ ++..-|+++-.+.+-.+..
T Consensus 167 ~~a~~~~~~~~~~l~~~~~~Iv~~C~GlPLai~~ 200 (285)
T pfam00931 167 NKVFEKELPPCPELEEVAKEIVEKCKGLPLALKV 200 (285)
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 9846898999767999999999985899499999
No 129
>TIGR02881 spore_V_K stage V sporulation protein K; InterPro: IPR014232 Proteins in this entry include the stage V sporulation protein K (SpoVK), a close homologue of the Rubisco expression protein CbbX (IPR000470 from INTERPRO), and are members of an ATPase family associated with various cellular activities. These proteins are strictly limited to bacterial endospore-forming species, but are not found universally among members of this group; they are missing from the Clostridium species..
Probab=98.14 E-value=0.0001 Score=48.84 Aligned_cols=164 Identities=13% Similarity=0.274 Sum_probs=106.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCC-------------------CCHHHHHHHHHHHHHHHH-HHHHHHHHHCC------C
Q ss_conf 999878777868899999986276-------------------201356764445466666-65334332100------3
Q gi|254780567|r 67 VILVGPSGSGKSCLANIWSDKSRS-------------------TRFSNIAKSLDSILIDTR-KPVLLEDIDLL------D 120 (246)
Q Consensus 67 l~i~G~~GsGKTHLl~a~~~~~~~-------------------~~~~~~~~~~~~~~~~~~-~~i~iddi~~~------~ 120 (246)
.++-|-||+|||..++.+++-+.. .|+-.++..+-...-.+. .++.+|.---+ +
T Consensus 45 MiFKGNPGTGKTTVAR~~gklf~emnvL~KGH~iE~ERADLVGEYIGHTAqkTRe~~kkA~GGvLFiDEAYSLaRGGEKD 124 (261)
T TIGR02881 45 MIFKGNPGTGKTTVARLLGKLFKEMNVLSKGHLIEVERADLVGEYIGHTAQKTREVIKKALGGVLFIDEAYSLARGGEKD 124 (261)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCC
T ss_conf 77427866843899999999985337567886788762221223203004899999998638800557777761488887
Q ss_pred CCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHH---HHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 76103354555431123421564035432002234---566788521222450788978999999998666289798899
Q gi|254780567|r 121 FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCL---PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 (246)
Q Consensus 121 ~~ee~lf~l~n~~~~~~~~iilts~~~p~~~~~~l---~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v 197 (246)
+=.|++=++.-+.-.+...+|+.----+.+++++| |-|.|||- ..++.+.-+.+.++.|..++..+|.=.++++.
T Consensus 125 FGKEAIDtLVK~mEd~~~~lvlILAGY~~EM~yFL~~NPGL~SRFP--i~i~FPdY~~eeL~~Ia~~m~~~ReY~Lt~~A 202 (261)
T TIGR02881 125 FGKEAIDTLVKAMEDQRNELVLILAGYSDEMDYFLSLNPGLRSRFP--ISIDFPDYTVEELMEIAERMVKEREYKLTEEA 202 (261)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCC--CEEECCCCCHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 6620888999987615698689970876899998620779777665--05418899888999999999864642257889
Q ss_pred HHHHHHCCC----------CCHHHHHHHHHH-H--HHHHHHHCCCCCH
Q ss_conf 999994066----------798999999999-9--9999984778788
Q gi|254780567|r 198 AAYIVQRME----------RSLVFAEKLVDK-M--DNLALSRGMGITR 232 (246)
Q Consensus 198 ~~yl~~r~~----------Rs~~~l~~~l~~-L--d~~sl~~kr~ITi 232 (246)
-..|-+++. .+-|.+++++++ | .+.=+..+..++.
T Consensus 203 ~~~lr~~l~~~~~~~~~~~sNaR~vRN~iE~AIR~QAvRlL~~~~~~k 250 (261)
T TIGR02881 203 KWKLREHLAKVDQLSSREFSNARYVRNIIEKAIRRQAVRLLKKSDYSK 250 (261)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf 999999974124442100576201242889999999987643464358
No 130
>KOG0652 consensus
Probab=98.13 E-value=1.1e-05 Score=54.93 Aligned_cols=145 Identities=14% Similarity=0.256 Sum_probs=86.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH----------------HHHHHHHHHHHHHHCCC-----
Q ss_conf 678849998787778688999999862762013567644454----------------66666653343321003-----
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI----------------LIDTRKPVLLEDIDLLD----- 120 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~iddi~~~~----- 120 (246)
.|-+.+.+|||||.|||-++++.+.++++.++......+... .-.+..++.||.++.+.
T Consensus 203 ~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfD 282 (424)
T KOG0652 203 RPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFD 282 (424)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHCCCHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEEECHHHHCCCCCC
T ss_conf 89972276579997577999999874010688732647776653341889999998753349838997300232334365
Q ss_pred ----CCC---HHHHHHHHH---HHCCCCCEEEEECCCCCCHHHHHHH-HHHHHHHCCEEEECCCCHHHHHHHHHHHHHHC
Q ss_conf ----761---033545554---3112342156403543200223456-67885212224507889789999999986662
Q gi|254780567|r 121 ----FND---TQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 (246)
Q Consensus 121 ----~~e---e~lf~l~n~---~~~~~~~iilts~~~p~~~~~~l~D-L~SRl~~g~~~~I~~pdde~~~~il~k~~~~r 189 (246)
|+. ..++.++|. +..+..--++++.... ++..|- |+| =+.---++.+.|+.+.|..|++-+. |
T Consensus 283 Sek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRv---DiLDPALlRS-GRLDRKIEfP~Pne~aRarIlQIHs--R 356 (424)
T KOG0652 283 SEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRV---DILDPALLRS-GRLDRKIEFPHPNEEARARILQIHS--R 356 (424)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCC---CCCCHHHHHC-CCCCCCCCCCCCCHHHHHHHHHHHH--H
T ss_conf 31234389999999999860489975626788521643---4348888644-6644443488997789889998864--0
Q ss_pred CCCCCHHHHHHHHHCCCCCHHHH
Q ss_conf 89798899999994066798999
Q gi|254780567|r 190 QIFIDKKLAAYIVQRMERSLVFA 212 (246)
Q Consensus 190 ~i~l~~~v~~yl~~r~~Rs~~~l 212 (246)
.++.+++|---=+-|..-++..+
T Consensus 357 KMnv~~DvNfeELaRsTddFNGA 379 (424)
T KOG0652 357 KMNVSDDVNFEELARSTDDFNGA 379 (424)
T ss_pred CCCCCCCCCHHHHHHCCCCCCCH
T ss_conf 05778887989985333566723
No 131
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.12 E-value=3.3e-05 Score=51.95 Aligned_cols=177 Identities=12% Similarity=0.095 Sum_probs=98.9
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC---------CHHHH
Q ss_conf 341558887766884541653618999999985101678849998787778688999999862762---------01356
Q gi|254780567|r 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST---------RFSNI 96 (246)
Q Consensus 26 ~Ql~l~~~~~~~~~~dnFiv~~~N~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~---------~~~~~ 96 (246)
+|.+-++.-.-.-+.=|-++|- ..+.-..++-+.....|.-+|.|+||+|||-++..++...-.- .+...
T Consensus 157 ~~y~~dLT~~A~~gklDpviGR-d~Ei~r~i~IL~Rr~KNNpiLVGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~~L 235 (852)
T TIGR03346 157 EKYARDLTERAREGKLDPVIGR-DEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL 235 (852)
T ss_pred HHHHHHHHHHHHCCCCCCCCCC-HHHHHHHHHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCEEE
T ss_conf 9998889999982899977383-699999999998732489721279998799999999999866999978851851275
Q ss_pred H---------------HHHHH--HHHHH---HHHHHHHHHHCCCCC--CHH---HHHHHHHHHCCCCCEEEEECCCCCCH
Q ss_conf 7---------------64445--46666---665334332100376--103---35455543112342156403543200
Q gi|254780567|r 97 A---------------KSLDS--ILIDT---RKPVLLEDIDLLDFN--DTQ---LFHIINSIHQYDSSLLMTARTFPVSW 151 (246)
Q Consensus 97 ~---------------~~~~~--~~~~~---~~~i~iddi~~~~~~--ee~---lf~l~n~~~~~~~~iilts~~~p~~~ 151 (246)
+ ..+.. ..+.. .-++.||++|.+-|. .+. .-+++--....|.--++.++ .+.+.
T Consensus 236 Dlg~LvAGtkyRGeFEeRlk~ii~ev~~~~~~iILFIDEiHtliGaG~~~G~~DAaNlLKPaLarGelr~IgAT-T~~EY 314 (852)
T TIGR03346 236 DMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGAT-TLDEY 314 (852)
T ss_pred EHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEC-CHHHH
T ss_conf 28877521530078999999999999858998799961255532688766641067774378747985599827-89999
Q ss_pred -HHHHHH--HHHHHHHCCEEEECCCCHHHHHHHHHHH----HHHCCCCCCHHHHHHHHHCCCC
Q ss_conf -223456--6788521222450788978999999998----6662897988999999940667
Q gi|254780567|r 152 -GVCLPD--LCSRLKAATVVKISLPDDDFLEKVIVKM----FADRQIFIDKKLAAYIVQRMER 207 (246)
Q Consensus 152 -~~~l~D--L~SRl~~g~~~~I~~pdde~~~~il~k~----~~~r~i~l~~~v~~yl~~r~~R 207 (246)
..+.+| |.-||. .+.+++|+.+....||+-. -.-.++.++++++.+.++-..|
T Consensus 315 rk~iEkD~AL~RRFq---~I~V~EPs~e~t~~IL~gl~~~yE~hH~V~i~d~Ai~aav~LS~R 374 (852)
T TIGR03346 315 RKYIEKDAALERRFQ---PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHR 374 (852)
T ss_pred HHHHHCCHHHHHHCC---CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHCC
T ss_conf 988322688997377---120479986899999997699997627926739999999997134
No 132
>KOG0744 consensus
Probab=98.09 E-value=9.7e-06 Score=55.20 Aligned_cols=133 Identities=18% Similarity=0.348 Sum_probs=79.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHC----CCCHHHHHH----------HHH---------HHHHH-------HHHHHHH
Q ss_conf 88499987877786889999998627----620135676----------444---------54666-------6665334
Q gi|254780567|r 64 SRVVILVGPSGSGKSCLANIWSDKSR----STRFSNIAK----------SLD---------SILID-------TRKPVLL 113 (246)
Q Consensus 64 ~~~l~i~G~~GsGKTHLl~a~~~~~~----~~~~~~~~~----------~~~---------~~~~~-------~~~~i~i 113 (246)
++.+.++||||.|||.|+.++|++-. ..|.+..-. .+. ...+. ..-++.|
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLI 256 (423)
T KOG0744 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLI 256 (423)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHEEEECCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 14899857999882279999987514652376444069997046788988712113899999999999717896899980
Q ss_pred HHHHCCCC--------CC--------HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHH
Q ss_conf 33210037--------61--------033545554311234215640354320022345667885212224507889789
Q gi|254780567|r 114 EDIDLLDF--------ND--------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 (246)
Q Consensus 114 ddi~~~~~--------~e--------e~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~ 177 (246)
|.+.-+.. +| .+++--++.++...--++++.+.-...++...-| ++-.+.-+.+|..+.
T Consensus 257 DEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVD-----RADi~~yVG~Pt~~a 331 (423)
T KOG0744 257 DEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVD-----RADIVFYVGPPTAEA 331 (423)
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHH-----HHHHEEECCCCCHHH
T ss_conf 787888999875413799821899999999989986047977999626267777888611-----754211038963999
Q ss_pred HHHHHHHHHHH---CCCCCCHHHHHHH
Q ss_conf 99999998666---2897988999999
Q gi|254780567|r 178 LEKVIVKMFAD---RQIFIDKKLAAYI 201 (246)
Q Consensus 178 ~~~il~k~~~~---r~i~l~~~v~~yl 201 (246)
+..|++-.... .|+-++..+-.|+
T Consensus 332 i~~IlkscieEL~~~gIi~~~~~s~~~ 358 (423)
T KOG0744 332 IYEILKSCIEELISSGIILFHQRSTGV 358 (423)
T ss_pred HHHHHHHHHHHHHHCCEEEEECCCHHH
T ss_conf 999999999999863843210000005
No 133
>KOG0739 consensus
Probab=98.09 E-value=1.9e-05 Score=53.45 Aligned_cols=138 Identities=22% Similarity=0.339 Sum_probs=90.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH----------------HHHHHHHHHHHHHHHCCCCCC---
Q ss_conf 7884999878777868899999986276201356764445----------------466666653343321003761---
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS----------------ILIDTRKPVLLEDIDLLDFND--- 123 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~i~iddi~~~~~~e--- 123 (246)
|-+.+.+|||||.|||+|+.|.+.+.+..+++.....+.. .......++.||.++...+..
T Consensus 165 PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~en 244 (439)
T KOG0739 165 PWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSEN 244 (439)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCC
T ss_conf 54257886799975779999987414770687301788998732179999999999873499479863444432688777
Q ss_pred ---------HHHHHHHHHHHCCCCC-EEEEECCCCCCHHHHHH-HHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCC
Q ss_conf ---------0335455543112342-15640354320022345-667885212224507889789999999986662897
Q gi|254780567|r 124 ---------TQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLP-DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 (246)
Q Consensus 124 ---------e~lf~l~n~~~~~~~~-iilts~~~p~~~~~~l~-DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~ 192 (246)
.+|+--.+.+-..+.. +|+.+..-| |.+. -.+-||. -.+-|+.|+-..|....+-+..+-.-.
T Consensus 245 EseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiP----w~LDsAIRRRFe--kRIYIPLPe~~AR~~MF~lhlG~tp~~ 318 (439)
T KOG0739 245 ESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIP----WVLDSAIRRRFE--KRIYIPLPEAHARARMFKLHLGDTPHV 318 (439)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC----HHHHHHHHHHHH--CCEECCCCCHHHHHHHHEECCCCCCCC
T ss_conf 11777777778887640666588864897237884----367799998765--023010873787655503204788641
Q ss_pred CCHHHHHHHHHCCC
Q ss_conf 98899999994066
Q gi|254780567|r 193 IDKKLAAYIVQRME 206 (246)
Q Consensus 193 l~~~v~~yl~~r~~ 206 (246)
+.+.-+.+|+...+
T Consensus 319 LT~~d~~eL~~kTe 332 (439)
T KOG0739 319 LTEQDFKELARKTE 332 (439)
T ss_pred CCHHHHHHHHHHCC
T ss_conf 33566999976437
No 134
>KOG0743 consensus
Probab=98.08 E-value=7.7e-05 Score=49.65 Aligned_cols=173 Identities=12% Similarity=0.160 Sum_probs=91.0
Q ss_pred CCCCCCCCCCCCCCEEECCCHHH-HHHHHHHHHCC---------CC-CEEEEECCCCCCHHHHHHHHHHHHCCCCHHHH-
Q ss_conf 55888776688454165361899-99999851016---------78-84999878777868899999986276201356-
Q gi|254780567|r 29 FFSFPRCLGISRDDLLVHSAIEQ-AVRLIDSWPSW---------PS-RVVILVGPSGSGKSCLANIWSDKSRSTRFSNI- 96 (246)
Q Consensus 29 ~l~~~~~~~~~~dnFiv~~~N~~-A~~~i~~~~~~---------~~-~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~- 96 (246)
.++|+.+ .+|+....-+.=+. ..+-+..+.++ |. +.-.||||||+|||.+..|+|+..+-.+..-.
T Consensus 191 ~v~f~Hp--stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeL 268 (457)
T KOG0743 191 SVGFPHP--STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLEL 268 (457)
T ss_pred ECCCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHCCCCEEEEEE
T ss_conf 5689999--87442014866789999999999722357886484500041204799998889999997205873677440
Q ss_pred HH-------HHHHHHHHHHHHHHHHHHHCCCC------C----CH---------HHHHHHHHHHCCC--CCEEEEECCCC
Q ss_conf 76-------44454666666533433210037------6----10---------3354555431123--42156403543
Q gi|254780567|r 97 AK-------SLDSILIDTRKPVLLEDIDLLDF------N----DT---------QLFHIINSIHQYD--SSLLMTARTFP 148 (246)
Q Consensus 97 ~~-------~~~~~~~~~~~~i~iddi~~~~~------~----ee---------~lf~l~n~~~~~~--~~iilts~~~p 148 (246)
+. .-......+..+++++||++--. . .+ .|++.++.+.+.- -+|++-.+.++
T Consensus 269 t~v~~n~dLr~LL~~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~ 348 (457)
T KOG0743 269 TEVKLDSDLRHLLLATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHK 348 (457)
T ss_pred CCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHCCCCCCCCCCEEEEEECCCH
T ss_conf 02368389999997289971899961243230443455566454677660664775664134300488734999946871
Q ss_pred CCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHH--------------CCCCC-CHHHHHHHHHCCC
Q ss_conf 2002234566788521222450788978999999998666--------------28979-8899999994066
Q gi|254780567|r 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD--------------RQIFI-DKKLAAYIVQRME 206 (246)
Q Consensus 149 ~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~--------------r~i~l-~~~v~~yl~~r~~ 206 (246)
..++ |-|.=+=+--+.+.+.-=+.+....+..++... .+..+ |-+|.+.++.+-.
T Consensus 349 EkLD---PALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~~eie~l~~~~~~tPA~V~e~lm~~~~ 418 (457)
T KOG0743 349 EKLD---PALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLFDEIERLIEETEVTPAQVAEELMKNKN 418 (457)
T ss_pred HHCC---HHHCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCC
T ss_conf 0068---866288752256672669879999999983389887306799998763374689999999863565
No 135
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=6.5e-05 Score=50.11 Aligned_cols=202 Identities=17% Similarity=0.224 Sum_probs=112.6
Q ss_pred CCCCCCCEEECCCHHHHHHHHHHHHCCCC----------CEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH---
Q ss_conf 66884541653618999999985101678----------84999878777868899999986276201356764445---
Q gi|254780567|r 36 LGISRDDLLVHSAIEQAVRLIDSWPSWPS----------RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--- 102 (246)
Q Consensus 36 ~~~~~dnFiv~~~N~~A~~~i~~~~~~~~----------~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~--- 102 (246)
..-+|.|--=.+.++.-+.-+-.+.+.|. +.+.++||||+|||-|+.+.+.+.+--+++.....+..
T Consensus 145 ~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfV 224 (596)
T COG0465 145 VKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFV 224 (596)
T ss_pred CCCCHHHHCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHCCCCCCCEECCCHHHHHHHC
T ss_conf 67675664186799999999999863855667523534565268559998727899998454689835303444644314
Q ss_pred ---------HHHHH----HHHHHHHHHHCCCCC------------CHHHHHH---HHHHHCCCCCEEEEECCCCCCHHHH
Q ss_conf ---------46666----665334332100376------------1033545---5543112342156403543200223
Q gi|254780567|r 103 ---------ILIDT----RKPVLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVC 154 (246)
Q Consensus 103 ---------~~~~~----~~~i~iddi~~~~~~------------ee~lf~l---~n~~~~~~~~iilts~~~p~~~~~~ 154 (246)
.+..+ ..++.+|.++..... |+.|-.+ .+....+...++++++..|.-++-.
T Consensus 225 GvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~A 304 (596)
T COG0465 225 GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPA 304 (596)
T ss_pred CCCCHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHH
T ss_conf 78838889999985515996698763433145457788998069999998888520157888754885267874333176
Q ss_pred HHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHH-HHCCCCCH
Q ss_conf 4566788521222450788978999999998666289798899999994066-798999999999999999-84778788
Q gi|254780567|r 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME-RSLVFAEKLVDKMDNLAL-SRGMGITR 232 (246)
Q Consensus 155 l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~-Rs~~~l~~~l~~Ld~~sl-~~kr~ITi 232 (246)
+-+= .|| --.+-++.||-..|..|++-++....+.-+-+.-. ++++.+ .+-.++.++++.=.-.+. ..++.||.
T Consensus 305 LlRp-gRF--DRqI~V~~PDi~gRe~IlkvH~~~~~l~~~V~l~~-iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~ 380 (596)
T COG0465 305 LLRP-GRF--DRQILVELPDIKGREQILKVHAKNKPLAEDVDLKK-IARGTPGFSGADLANLLNEAALLAARRNKKEITM 380 (596)
T ss_pred HCCC-CCC--CEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCHHH-HHHHCCCCCCCHHHHHHHHHHHHHHHHCCEEEEC
T ss_conf 5288-776--62554478515657888788641577776678889-8643778563067655668899998836846753
Q ss_pred HHHHHHHHH
Q ss_conf 999999986
Q gi|254780567|r 233 SLAAEVLKE 241 (246)
Q Consensus 233 ~lvk~vL~~ 241 (246)
.-+.+....
T Consensus 381 ~~i~ea~dr 389 (596)
T COG0465 381 RDIEEAIDR 389 (596)
T ss_pred CCHHHHHHH
T ss_conf 453889999
No 136
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.04 E-value=9.4e-05 Score=49.14 Aligned_cols=191 Identities=16% Similarity=0.216 Sum_probs=104.4
Q ss_pred CCCCCCCCCCCCCEEECCCHHH---HHHHHHHHH------CC------CCCEEEEECCCCCCHHHHHHHHHHHHCCCCHH
Q ss_conf 5888776688454165361899---999998510------16------78849998787778688999999862762013
Q gi|254780567|r 30 FSFPRCLGISRDDLLVHSAIEQ---AVRLIDSWP------SW------PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 (246)
Q Consensus 30 l~~~~~~~~~~dnFiv~~~N~~---A~~~i~~~~------~~------~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~ 94 (246)
+|-|..-...+|.|+||..... |++.-..|. .. ..+.+.+.||.|||||+|++-+++..+.-+..
T Consensus 60 lp~P~eI~~~LD~yVIGQ~~AKk~lsVAvyNHykRi~~~~~~~~~vei~KsNILliGPTG~GKTlla~tLAk~l~vPF~i 139 (411)
T PRK05342 60 LPTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRQNGSKSDDVELQKSNILLIGPTGSGKTLLAQTLARILNVPFAI 139 (411)
T ss_pred CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEE
T ss_conf 99979999986214028488889999999999999860213356652134538998999977889999999986999899
Q ss_pred HHH-------------HHH---------HHHHHHHHHHHHHHHHHCCCC---------------CCHHHHHHHHHHHCC-
Q ss_conf 567-------------644---------454666666533433210037---------------610335455543112-
Q gi|254780567|r 95 NIA-------------KSL---------DSILIDTRKPVLLEDIDLLDF---------------NDTQLFHIINSIHQY- 136 (246)
Q Consensus 95 ~~~-------------~~~---------~~~~~~~~~~i~iddi~~~~~---------------~ee~lf~l~n~~~~~- 136 (246)
..+ .+. .+.......++.+|.++.+.. -|++|+-++....-+
T Consensus 140 aDAT~lTEaGYVGeDVE~ii~~Llq~Ad~dve~Ae~GIV~IDEIDKIarks~~~s~trDVSgEGVQqaLLkiiEGt~v~v 219 (411)
T PRK05342 140 ADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASV 219 (411)
T ss_pred EEECEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCEEEEEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCEECC
T ss_conf 86120012674560799999999998288899883682888502345424788888777651248999999875871411
Q ss_pred -----------------CCCEEEEECCCCC---------------------------------------CHH--HHHHHH
Q ss_conf -----------------3421564035432---------------------------------------002--234566
Q gi|254780567|r 137 -----------------DSSLLMTARTFPV---------------------------------------SWG--VCLPDL 158 (246)
Q Consensus 137 -----------------~~~iilts~~~p~---------------------------------------~~~--~~l~DL 158 (246)
-+.++|.+...-. ++- ...|.|
T Consensus 220 p~~ggrkhp~~~~~~idT~nILFI~gGAF~GL~~II~~R~~~~~iGF~~~~~~~~~~~~~~~l~~v~p~DLi~fGlIPEf 299 (411)
T PRK05342 220 PPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKSGIGFGAEVKSKDEKDLGELLAQVEPEDLVKFGLIPEF 299 (411)
T ss_pred CCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHCCCCHHH
T ss_conf 88877778776516761471799911553358999986357887677887664110005678762798788873883776
Q ss_pred HHHHHHCCEEEECCCCHHHHHHHHH-----------HHHHHCCCC--CCHHHHHHHHHCCC---CCHHHHHHHHHHHHHH
Q ss_conf 7885212224507889789999999-----------986662897--98899999994066---7989999999999999
Q gi|254780567|r 159 CSRLKAATVVKISLPDDDFLEKVIV-----------KMFADRQIF--IDKKLAAYIVQRME---RSLVFAEKLVDKMDNL 222 (246)
Q Consensus 159 ~SRl~~g~~~~I~~pdde~~~~il~-----------k~~~~r~i~--l~~~v~~yl~~r~~---Rs~~~l~~~l~~Ld~~ 222 (246)
.-||- .++.+++++.+.+..||. +.+...|+. +.+++++.|++.-- .-.|.++++++++-.-
T Consensus 300 iGRlP--Viv~L~~L~~~~L~~ILtePkNaLikQY~~LF~~dgV~L~Ft~~AL~~IA~~A~~~~tGARgLRsIlE~iLld 377 (411)
T PRK05342 300 IGRLP--VVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDDALEAIAKKAIERKTGARGLRSILEEVLLD 377 (411)
T ss_pred HCCCC--EEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 14664--0546244799999999658741599999999975496799868999999999998475745779999999788
No 137
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=98.03 E-value=0.00043 Score=45.08 Aligned_cols=80 Identities=21% Similarity=0.259 Sum_probs=70.0
Q ss_pred HHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 21222450788978999999998666289798899999994066798999999999999999847787889999999867
Q gi|254780567|r 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 (246)
Q Consensus 163 ~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~ITi~lvk~vL~~~ 242 (246)
+.|.+++..+|+...+...+++.+...|+.+++++++|+++++..+...+..-+++|..++ .+++||...|.+++...
T Consensus 136 ~~~~~i~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~--~~~~It~~dV~~~v~~~ 213 (336)
T PRK05574 136 KKAVVVEAQTPKEAELPQWIQQRLKQQGLRIDAAALQLLAERVEGNLLALAQEIEKLALLY--PDGKITLEDVEEAVPDS 213 (336)
T ss_pred HCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHC--CCCCCCHHHHHHHHCCC
T ss_conf 4807998069998999999999999849998989999999972113999999999999837--88887899999986164
Q ss_pred HC
Q ss_conf 41
Q gi|254780567|r 243 QQ 244 (246)
Q Consensus 243 ~~ 244 (246)
..
T Consensus 214 ~~ 215 (336)
T PRK05574 214 AR 215 (336)
T ss_pred CC
T ss_conf 33
No 138
>KOG0991 consensus
Probab=98.01 E-value=5.5e-05 Score=50.56 Aligned_cols=170 Identities=14% Similarity=0.161 Sum_probs=107.1
Q ss_pred CHHHHHHHHHHHHC-CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH----------HHH-----------
Q ss_conf 18999999985101-67884999878777868899999986276201356764445----------466-----------
Q gi|254780567|r 48 AIEQAVRLIDSWPS-WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS----------ILI----------- 105 (246)
Q Consensus 48 ~N~~A~~~i~~~~~-~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~----------~~~----------- 105 (246)
.|+.+++.++-... +....++|.||||+|||.=..+++++--..........+.. ..+
T Consensus 31 GNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK~FAQ~kv~lp 110 (333)
T KOG0991 31 GNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIKMFAQKKVTLP 110 (333)
T ss_pred CCHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 77989999999997289986675279998616489999999838066657632057655460899999999987203489
Q ss_pred -HHHHHHHHHHHHCC-CCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHH
Q ss_conf -66665334332100-3761033545554311234215640354320022345667885212224507889789999999
Q gi|254780567|r 106 -DTRKPVLLEDIDLL-DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 (246)
Q Consensus 106 -~~~~~i~iddi~~~-~~~ee~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~ 183 (246)
...+++++|.-+-. .+.|++|=-. -+.+++..+..++|+..- + ..+-+.||+. +.....++|.-...-+.
T Consensus 111 ~grhKIiILDEADSMT~gAQQAlRRt-MEiyS~ttRFalaCN~s~---K-IiEPIQSRCA---iLRysklsd~qiL~Rl~ 182 (333)
T KOG0991 111 PGRHKIIILDEADSMTAGAQQALRRT-MEIYSNTTRFALACNQSE---K-IIEPIQSRCA---ILRYSKLSDQQILKRLL 182 (333)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHH-HHHHCCCCHHHHHHCCHH---H-HHHHHHHHHH---HHHHCCCCHHHHHHHHH
T ss_conf 98524899615220206899999999-999706320000015421---3-2226773457---65322267899999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHH-HHHHHHH
Q ss_conf 98666289798899999994066798999999999-9999998
Q gi|254780567|r 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK-MDNLALS 225 (246)
Q Consensus 184 k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~-Ld~~sl~ 225 (246)
..+...++...++-++-++--.+.|++...+.+.. ...+.+.
T Consensus 183 ~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst~~g~g~V 225 (333)
T KOG0991 183 EVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQSTVNGFGLV 225 (333)
T ss_pred HHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 9998707887711477855441661999999999874054524
No 139
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.01 E-value=0.00012 Score=48.40 Aligned_cols=169 Identities=17% Similarity=0.170 Sum_probs=100.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC--CHHHHHHHH--------HHHHHHHH----HHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 49998787778688999999862762--013567644--------45466666----65334332100376103354555
Q gi|254780567|r 66 VVILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSL--------DSILIDTR----KPVLLEDIDLLDFNDTQLFHIIN 131 (246)
Q Consensus 66 ~l~i~G~~GsGKTHLl~a~~~~~~~~--~~~~~~~~~--------~~~~~~~~----~~i~iddi~~~~~~ee~lf~l~n 131 (246)
..+|+||-+||||+|++-+....... ++....... ........ ..+++|.++...+|+..+=++++
T Consensus 39 i~~i~GpR~~GKTtllk~l~~~~~~~~iy~~~~d~~~~~~~l~d~~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d 118 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIELLDLLRAYIELKEREKSYIFLDEIQNVPDWERALKYLYD 118 (398)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHC
T ss_conf 49998886477899999999747773599973620001356778999999852225745999833376108999999975
Q ss_pred HHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHH-------------HHHHHHHHCCCCCC----
Q ss_conf 4311234215640354320022345667885212224507889789999-------------99998666289798----
Q gi|254780567|r 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK-------------VIVKMFADRQIFID---- 194 (246)
Q Consensus 132 ~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~-------------il~k~~~~r~i~l~---- 194 (246)
.-.. .++++++.+.....-.-+.|.=| +..+++-|.+..+-.. ...++....|+.-.
T Consensus 119 ~~~~---~v~itgsss~ll~~~~s~~L~GR---~~~~~l~PlSF~Efl~~~~~~~~~~~~~~~f~~Yl~~GGfP~~v~~~ 192 (398)
T COG1373 119 RGNL---DVLITGSSSSLLSKEISESLAGR---GKDLELYPLSFREFLKLKGEEIEPSKLELLFEKYLETGGFPESVKAD 192 (398)
T ss_pred CCCC---EEEEECCCHHHHCCCHHHHCCCC---EEEEEECCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHCC
T ss_conf 6775---09998371675413302324998---23789848888998641352100256799999987728985665265
Q ss_pred HH---HHHHHHHCCCCCHHHHHH-----HHHHH-HHHHHHHCCCCCHHHHHHHHH
Q ss_conf 89---999999406679899999-----99999-999998477878899999998
Q gi|254780567|r 195 KK---LAAYIVQRMERSLVFAEK-----LVDKM-DNLALSRGMGITRSLAAEVLK 240 (246)
Q Consensus 195 ~~---v~~yl~~r~~Rs~~~l~~-----~l~~L-d~~sl~~kr~ITi~lvk~vL~ 240 (246)
.. ..+|+..-+.||...... .+.++ ...+...+.+++..-+.+.++
T Consensus 193 ~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~k~i~~~l~~~~g~~~s~~~l~~~l~ 247 (398)
T COG1373 193 LSEKKLKEYLDTILKRDIIERGKIENADLMKRILRFLASNIGSPISYSSLARELK 247 (398)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 2356788999999876688763744479999999998750366456999999972
No 140
>KOG1942 consensus
Probab=98.00 E-value=0.00086 Score=43.20 Aligned_cols=111 Identities=16% Similarity=0.179 Sum_probs=74.2
Q ss_pred HHHHHHHHHHCCCC--CEEEEECCCCCCH---------HHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 33545554311234--2156403543200---------223456678852122245078897899999999866628979
Q gi|254780567|r 125 QLFHIINSIHQYDS--SLLMTARTFPVSW---------GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193 (246)
Q Consensus 125 ~lf~l~n~~~~~~~--~iilts~~~p~~~---------~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l 193 (246)
+-|..++...++.- -++|+|+.--... ....+||.-|+. ++...+-+++..+.|++..+...++.+
T Consensus 311 EcFTyL~kalES~iaPivifAsNrG~~~irGt~d~~sPhGip~dllDRl~---Iirt~~y~~~e~r~Ii~~Ra~~E~l~~ 387 (456)
T KOG1942 311 ECFTYLHKALESPIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLL---IIRTLPYDEEEIRQIIKIRAQVEGLQV 387 (456)
T ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCEEECCCCCCCCCCCCCHHHHHHEE---EEEECCCCHHHHHHHHHHHHHHHCCEE
T ss_conf 99999999862778756999627761022177678787889977861266---786036998999999999876514232
Q ss_pred CHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHH
Q ss_conf 8899999994066-7989999999999999998477-8788999999
Q gi|254780567|r 194 DKKLAAYIVQRME-RSLVFAEKLVDKMDNLALSRGM-GITRSLAAEV 238 (246)
Q Consensus 194 ~~~v~~yl~~r~~-Rs~~~l~~~l~~Ld~~sl~~kr-~ITi~lvk~v 238 (246)
+++.+++++.--. +|++....++.-....+-..+| .|...-|.++
T Consensus 388 ~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~ 434 (456)
T KOG1942 388 EEEALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEV 434 (456)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHCCCCEEECCCHHHH
T ss_conf 28899998760541457889885378889998719853431248999
No 141
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=97.97 E-value=0.00012 Score=48.59 Aligned_cols=177 Identities=13% Similarity=0.134 Sum_probs=103.8
Q ss_pred EEECCCHHH--HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHC-----CCCHHHHHHHHH--H--HH-------
Q ss_conf 165361899--99999851016788499987877786889999998627-----620135676444--5--46-------
Q gi|254780567|r 43 LLVHSAIEQ--AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR-----STRFSNIAKSLD--S--IL------- 104 (246)
Q Consensus 43 Fiv~~~N~~--A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~-----~~~~~~~~~~~~--~--~~------- 104 (246)
=+||.|-.+ .++.|...... .-+++|+|++|+||..+++++-..+. .+.+.+...... . .+
T Consensus 187 elIG~S~~m~~l~~~i~~vA~s-d~pVLI~GEtGTGKelvAr~IH~~S~R~~~Pfv~vNCaalpe~l~EseLFGh~kGaF 265 (510)
T PRK05022 187 EMIGQSPAMQQLKKEIEVVAAS-DLNVLITGETGVGKELVARAIHQASPRAVKPLVYLNCAALPESLAESELFGHVKGAF 265 (510)
T ss_pred CEEECCHHHHHHHHHHHHHHCC-CCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCC
T ss_conf 7520899999999999999689-998898898981399999999966887899857888999985678998659777886
Q ss_pred ------------HHHHHHHHHHHHHCCCCC-CHHHHHHHHHH----------HCCCCCEEEEECCCCCCH---HHHHHHH
Q ss_conf ------------666665334332100376-10335455543----------112342156403543200---2234566
Q gi|254780567|r 105 ------------IDTRKPVLLEDIDLLDFN-DTQLFHIINSI----------HQYDSSLLMTARTFPVSW---GVCLPDL 158 (246)
Q Consensus 105 ------------~~~~~~i~iddi~~~~~~-ee~lf~l~n~~----------~~~~~~iilts~~~p~~~---~~~l~DL 158 (246)
...-..+.+|++..++-. |..|+..+..- ..-+.++|-+++....+. .-+.+||
T Consensus 266 tGA~~~r~G~fe~A~gGTLfLDEI~~Lpl~~Q~KLLrvLq~g~iqrvG~~~~~~vdvRIIAATnrdL~~~V~~G~FR~DL 345 (510)
T PRK05022 266 TGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVLAGRFRADL 345 (510)
T ss_pred CCCCCCCCCCEEECCCCEEEEECHHHCCHHHHHHHHHHHHCCEEEECCCCCEEEEEEEEEEECCCCHHHHHHCCCHHHHH
T ss_conf 88655678810177898798757454999999999999847958855899466666899960783599998839638999
Q ss_pred HHHHHHCCEEEECCCCH--HHHHH----HHHHHHHH---CCCCCCHHHHHHHHHC-CCCCHHHHHHHHHHHHH
Q ss_conf 78852122245078897--89999----99998666---2897988999999940-66798999999999999
Q gi|254780567|r 159 CSRLKAATVVKISLPDD--DFLEK----VIVKMFAD---RQIFIDKKLAAYIVQR-MERSLVFAEKLVDKMDN 221 (246)
Q Consensus 159 ~SRl~~g~~~~I~~pdd--e~~~~----il~k~~~~---r~i~l~~~v~~yl~~r-~~Rs~~~l~~~l~~Ld~ 221 (246)
--||+.. .+.|+|+-+ +.... .+.+.... +.+.+++++++.+..+ ++.+++++++++.+.--
T Consensus 346 YyRLsv~-~I~vPPLRER~eDI~lLa~~FLe~~~~~~g~~~~~ls~eAl~~L~~Y~WPGNVRELenvIeRA~l 417 (510)
T PRK05022 346 YHRLSVF-PLPVPPLRERGDDVLLLAGYFLEQNRLRLGLSSLRLSPDAQAALLQYDWPGNVRELEHVISRAAL 417 (510)
T ss_pred HHHHHCC-CCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 9876204-03480865555409999999999999982989898889999999709999789999999999999
No 142
>KOG1970 consensus
Probab=97.96 E-value=0.00025 Score=46.52 Aligned_cols=166 Identities=14% Similarity=0.167 Sum_probs=93.9
Q ss_pred HHHHHHHC--------CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHH------------------------HHHHHH
Q ss_conf 99985101--------6788499987877786889999998627620135------------------------676444
Q gi|254780567|r 54 RLIDSWPS--------WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN------------------------IAKSLD 101 (246)
Q Consensus 54 ~~i~~~~~--------~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~------------------------~~~~~~ 101 (246)
+.++.|.+ -+++.++|.||+|||||.-++.++++.+-.+..- ......
T Consensus 92 ~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~f 171 (634)
T KOG1970 92 SEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENLHNETSFLMFPYQSQLAVF 171 (634)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCHHCCCCHHHHHHHH
T ss_conf 99999999999745366760799857988871319999998648021230477665665554554400133036678999
Q ss_pred HHHH-----------------HHHHHHHHHHHHCCCCC-CHHHHHHHHHHH-CCC-CCEEEEECCCCCCHH-----HHHH
Q ss_conf 5466-----------------66665334332100376-103354555431-123-421564035432002-----2345
Q gi|254780567|r 102 SILI-----------------DTRKPVLLEDIDLLDFN-DTQLFHIINSIH-QYD-SSLLMTARTFPVSWG-----VCLP 156 (246)
Q Consensus 102 ~~~~-----------------~~~~~i~iddi~~~~~~-ee~lf~l~n~~~-~~~-~~iilts~~~p~~~~-----~~l~ 156 (246)
..+. ....++.+||+...... ....|+..-..+ ..+ .++||.-+..-..++ -+..
T Consensus 172 esFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~ 251 (634)
T KOG1970 172 ESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRDDSETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPK 251 (634)
T ss_pred HHHHHHHHHHCHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHCHH
T ss_conf 98999987623165313333467507985026144400369999999999984577767999863535787634342426
Q ss_pred HHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCC------HHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 66788521222450788978999999998666289798------89999999406679899999999999999
Q gi|254780567|r 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID------KKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 (246)
Q Consensus 157 DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~------~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~s 223 (246)
|+. --.....+...|.....+++.|+..|...+-..+ ...++-|+.-.. ++|+.+++.|.--|
T Consensus 252 d~q-~~~ri~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~i~~~s~---GDIRsAInsLQlss 320 (634)
T KOG1970 252 DIQ-EEPRISNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVELICQGSG---GDIRSAINSLQLSS 320 (634)
T ss_pred HHH-HCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC---CCHHHHHHHHHHHC
T ss_conf 565-3358524761577679999999999998626666676750679999987527---73999987753320
No 143
>KOG0742 consensus
Probab=97.95 E-value=0.0001 Score=48.88 Aligned_cols=201 Identities=16% Similarity=0.161 Sum_probs=111.0
Q ss_pred CCCCCCCEEECCCHHHHHHHHHH------HHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH------H
Q ss_conf 66884541653618999999985------10167884999878777868899999986276201356764445------4
Q gi|254780567|r 36 LGISRDDLLVHSAIEQAVRLIDS------WPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS------I 103 (246)
Q Consensus 36 ~~~~~dnFiv~~~N~~A~~~i~~------~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~------~ 103 (246)
..-.+++-|..|+-+.-+.-|.. .-..|++.+.+|||||.|||-.+.-++.+++-.|-...-..... .
T Consensus 350 gk~pl~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qaVT 429 (630)
T KOG0742 350 GKDPLEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQAVT 429 (630)
T ss_pred CCCCCCCEECCHHHHHHHHHHHHHHCCCCCCCCHHHHEEEECCCCCCHHHHHHHHHHHCCCCEEHHCCCCCCCCHHHHHH
T ss_conf 77776784127779999999988740430024304400324799986049999998852874100137875552178899
Q ss_pred HHH---HH-------HHHHHHHHHCCCC------CCHHHHHHHHH-----HHCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 666---66-------6533433210037------61033545554-----311234215640354320022345667885
Q gi|254780567|r 104 LID---TR-------KPVLLEDIDLLDF------NDTQLFHIINS-----IHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 (246)
Q Consensus 104 ~~~---~~-------~~i~iddi~~~~~------~ee~lf~l~n~-----~~~~~~~iilts~~~p~~~~~~l~DL~SRl 162 (246)
.++ .| -++.||.-+.+-. -.|..=..+|. -..+.+.+++.++..|.++++...| |
T Consensus 430 kiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgdlDsAV~D---R- 505 (630)
T KOG0742 430 KIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAVND---R- 505 (630)
T ss_pred HHHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHH---H-
T ss_conf 999987887515664499861167899875201025889999988987625655426899605883210167876---5-
Q ss_pred HHCCEEEECCCCHHHHHHHHHHHHHHCC----------------------CCCC----HHHHHHHHHCCC-CCHHHHHHH
Q ss_conf 2122245078897899999999866628----------------------9798----899999994066-798999999
Q gi|254780567|r 163 KAATVVKISLPDDDFLEKVIVKMFADRQ----------------------IFID----KKLAAYIVQRME-RSLVFAEKL 215 (246)
Q Consensus 163 ~~g~~~~I~~pdde~~~~il~k~~~~r~----------------------i~l~----~~v~~yl~~r~~-Rs~~~l~~~ 215 (246)
---+++.+.|..|++..+|..+++..= |.|. ++++.-.+...+ -|-+.|-.+
T Consensus 506 -ide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakL 584 (630)
T KOG0742 506 -IDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKL 584 (630)
T ss_pred -HHHHEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHEEEECCCHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf -5541306899778999999999999814777778972155777644015544343188899999986068757899999
Q ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHHH
Q ss_conf 999999999847-78788999999986
Q gi|254780567|r 216 VDKMDNLALSRG-MGITRSLAAEVLKE 241 (246)
Q Consensus 216 l~~Ld~~sl~~k-r~ITi~lvk~vL~~ 241 (246)
+.......+... --+|-.+.+++...
T Consensus 585 va~vQAavYgsedcvLd~~lf~e~v~y 611 (630)
T KOG0742 585 VASVQAAVYGSEDCVLDEALFDERVDY 611 (630)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 999889885042211269999999999
No 144
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.92 E-value=5.6e-05 Score=50.51 Aligned_cols=160 Identities=15% Similarity=0.172 Sum_probs=91.5
Q ss_pred CCEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC---------CHHHHHH-------------
Q ss_conf 541653618999999985101678849998787778688999999862762---------0135676-------------
Q gi|254780567|r 41 DDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST---------RFSNIAK------------- 98 (246)
Q Consensus 41 dnFiv~~~N~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~---------~~~~~~~------------- 98 (246)
=|=++|- ..+.-..++-+.....|.-+|.|+||+|||-++..+|...-.- .+...+.
T Consensus 186 lDPvIGR-d~EI~r~iqIL~Rr~KNNPiLVGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~sLDlg~LvAGtkyRGeF 264 (852)
T TIGR03345 186 IDPVLGR-DDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEF 264 (852)
T ss_pred CCCCCCC-HHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHCCEEEEEEHHHHHHCCCCCCHH
T ss_conf 9988694-999999999998624799746579998799999999999976999867743856786788886403576359
Q ss_pred --HHHH--HHH-HHHH--HHHHHHHHCCCCC--CH---HHHHHHHHHHCCCCCEEEEECCCCCCH-HHHHHH--HHHHHH
Q ss_conf --4445--466-6666--5334332100376--10---335455543112342156403543200-223456--678852
Q gi|254780567|r 99 --SLDS--ILI-DTRK--PVLLEDIDLLDFN--DT---QLFHIINSIHQYDSSLLMTARTFPVSW-GVCLPD--LCSRLK 163 (246)
Q Consensus 99 --~~~~--~~~-~~~~--~i~iddi~~~~~~--ee---~lf~l~n~~~~~~~~iilts~~~p~~~-~~~l~D--L~SRl~ 163 (246)
.+.. ..+ .... ++.||.+|.+-|. .+ ..-+++--....|.--++.++ .+.++ ..+.+| |.=||.
T Consensus 265 EeRlk~ii~ei~~~~~~iILFIDEiHtlvGAG~~~G~~DaaNiLKPaLarGelr~IGAT-T~~EYrk~iEkD~AL~RRFq 343 (852)
T TIGR03345 265 ENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELRTIAAT-TWAEYKKYFEKDPALTRRFQ 343 (852)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEC-CHHHHHHHHHCCHHHHHHCC
T ss_conf 99999999999848997699963487752899888862278875178737873499835-78999888642688996247
Q ss_pred HCCEEEECCCCHHHHHHHHHHHHH----HCCCCCCHHHHHHHHHCC
Q ss_conf 122245078897899999999866----628979889999999406
Q gi|254780567|r 164 AATVVKISLPDDDFLEKVIVKMFA----DRQIFIDKKLAAYIVQRM 205 (246)
Q Consensus 164 ~g~~~~I~~pdde~~~~il~k~~~----~r~i~l~~~v~~yl~~r~ 205 (246)
.+.+++|+.+....||.-... -.++.++++++...++-.
T Consensus 344 ---~V~V~EPs~eeti~IL~glk~~yE~hH~V~i~d~Ai~aAv~LS 386 (852)
T TIGR03345 344 ---VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELS 386 (852)
T ss_pred ---CCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHH
T ss_conf ---5527999879999999987999855479687089999999998
No 145
>KOG0728 consensus
Probab=97.87 E-value=0.00012 Score=48.48 Aligned_cols=160 Identities=16% Similarity=0.245 Sum_probs=89.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH----------------HHHHHHHHHHHHHHHCCCC-------
Q ss_conf 84999878777868899999986276201356764445----------------4666666533433210037-------
Q gi|254780567|r 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS----------------ILIDTRKPVLLEDIDLLDF------- 121 (246)
Q Consensus 65 ~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~i~iddi~~~~~------- 121 (246)
+.+.+|||+|.|||-|+.+.++++...++...-..+.. ....+..++..|.++.+..
T Consensus 182 KGvlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ 261 (404)
T KOG0728 182 KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGS 261 (404)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCCCCCCCCCCC
T ss_conf 60488469997562999998754140799964499999985013899999999987508826750000121234345789
Q ss_pred --C---CHHHHHHHHHHH---C-CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHH----
Q ss_conf --6---103354555431---1-23421564035432002234566788521222450788978999999998666----
Q gi|254780567|r 122 --N---DTQLFHIINSIH---Q-YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD---- 188 (246)
Q Consensus 122 --~---ee~lf~l~n~~~---~-~~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~---- 188 (246)
+ +..++.++|.+. . .+-+++++.+ .+++..+-|.--=+----++.+||+.+.+..||+-+...
T Consensus 262 ggdsevqrtmlellnqldgfeatknikvimatn----ridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~ 337 (404)
T KOG0728 262 GGDSEVQRTMLELLNQLDGFEATKNIKVIMATN----RIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLT 337 (404)
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECC----CCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 863899999999997402400036626998416----4222468663877545556489987788878998855530133
Q ss_pred CCCCCCHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHCC-CCCHH
Q ss_conf 2897988999999940667-989999999999999998477-87889
Q gi|254780567|r 189 RQIFIDKKLAAYIVQRMER-SLVFAEKLVDKMDNLALSRGM-GITRS 233 (246)
Q Consensus 189 r~i~l~~~v~~yl~~r~~R-s~~~l~~~l~~Ld~~sl~~kr-~ITi~ 233 (246)
|||.+ .-|++.++. |-..+.++-..---+++...| -+|..
T Consensus 338 rgi~l-----~kiaekm~gasgaevk~vcteagm~alrerrvhvtqe 379 (404)
T KOG0728 338 RGINL-----RKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVTQE 379 (404)
T ss_pred CCCCH-----HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 06678-----9999867898630254343354578887652002388
No 146
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.83 E-value=4.3e-05 Score=51.24 Aligned_cols=127 Identities=13% Similarity=0.196 Sum_probs=63.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 99987877786889999998627620135676444546666665334332100376103354555431123421564035
Q gi|254780567|r 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTART 146 (246)
Q Consensus 67 l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iddi~~~~~~ee~lf~l~n~~~~~~~~iilts~~ 146 (246)
+++.|.+|||||.++++++++.+..++.+..............-+-++|-+...|-+..--.++..+...+..+|++++.
T Consensus 2 iiv~GvsGsGKSTia~~La~~lg~~~i~~D~~h~~~n~~km~~G~pL~d~dr~~wl~~l~~~~~~~~~~~g~~vVv~cSa 81 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPANIAKMAAGIPLNDEDRWPWLQALTDALLAKLASAGEGVVVACSA 81 (150)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEHH
T ss_conf 89991899999999999999719956415433547689998679998852378999999999999998449987998433
Q ss_pred CCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 4320022345667885212224507889789999999986662897988999
Q gi|254780567|r 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198 (246)
Q Consensus 147 ~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~ 198 (246)
--...-..+.++... .....+-+..|.+..+..+..+ ++=..+.+.+
T Consensus 82 Lk~~yR~~l~~~~~~-~~v~fi~L~~~~~~l~~Rl~~R----~~hfm~~~ll 128 (150)
T cd02021 82 LKRIYRDILRGGAAN-PRVRFVHLDGPREVLAERLAAR----KGHFMPADLL 128 (150)
T ss_pred HHHHHHHHHHHHCCC-CCEEEEEEECCHHHHHHHHHHC----CCCCCCHHHH
T ss_conf 239999999952768-9858999869999999999846----3579998999
No 147
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.82 E-value=0.00065 Score=43.97 Aligned_cols=186 Identities=16% Similarity=0.165 Sum_probs=106.1
Q ss_pred CCCCCCCEEECCCHHH--HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHH-
Q ss_conf 6688454165361899--999998510167884999878777868899999986276------2013567644454666-
Q gi|254780567|r 36 LGISRDDLLVHSAIEQ--AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS------TRFSNIAKSLDSILID- 106 (246)
Q Consensus 36 ~~~~~dnFiv~~~N~~--A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~------~~~~~~~~~~~~~~~~- 106 (246)
....+++.| |.+..+ +..-++..+. .+.++.|+|++|+||++.++.+-..... +.+.+.+.........
T Consensus 73 ~~~~~~~LI-G~~~~~~~~~eqik~~ap-~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eL 150 (403)
T COG1221 73 KSEALDDLI-GESPSLQELREQIKAYAP-SGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAEL 150 (403)
T ss_pred CCHHHHHHH-CCCHHHHHHHHHHHHHCC-CCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEHHHHCCCHHHHHH
T ss_conf 221566663-568889999999986189-998479866887538899999998612135898799777773767777777
Q ss_pred ----------------------HHHHHHHHHHHCCCC-CCHHHHHHHHHH----------HCCCCCEEEEECCCCCCHHH
Q ss_conf ----------------------666533433210037-610335455543----------11234215640354320022
Q gi|254780567|r 107 ----------------------TRKPVLLEDIDLLDF-NDTQLFHIINSI----------HQYDSSLLMTARTFPVSWGV 153 (246)
Q Consensus 107 ----------------------~~~~i~iddi~~~~~-~ee~lf~l~n~~----------~~~~~~iilts~~~p~~~~~ 153 (246)
.-..+.+|+++-++- -++.||.++..- ....-+++.+....+.+.-.
T Consensus 151 FG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~l~~~~~ 230 (403)
T COG1221 151 FGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTEDLEEAVL 230 (403)
T ss_pred HCCCCCEEECCCCCCCCHHEECCCCEEEHHHHHHCCHHHHHHHHHHHHCCCEEECCCCCCCCCCCEEEECCCCCHHHHHH
T ss_conf 32000000256678676420527977765636537985899999998718657668888867774045135668799987
Q ss_pred HHHHHHHHHHHCCEEEECCCCH--HHHHH----HHHHHHHHCCCCCC----HHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 3456678852122245078897--89999----99998666289798----89999999406679899999999999999
Q gi|254780567|r 154 CLPDLCSRLKAATVVKISLPDD--DFLEK----VIVKMFADRQIFID----KKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 (246)
Q Consensus 154 ~l~DL~SRl~~g~~~~I~~pdd--e~~~~----il~k~~~~r~i~l~----~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~s 223 (246)
...||..|+. ..+++|+|+-. +.+.. .+...+.+.+..++ +-+...+.-+.+.+.+.+.+.++++-..+
T Consensus 231 ~g~dl~~rl~-~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~pGNirELkN~Ve~~~~~~ 309 (403)
T COG1221 231 AGADLTRRLN-ILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWPGNIRELKNLVERAVAQA 309 (403)
T ss_pred HHCCHHHHHC-CCEECCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 4052556416-754318972435555999999999999997399988888999999984889983999999999999973
Q ss_pred H
Q ss_conf 9
Q gi|254780567|r 224 L 224 (246)
Q Consensus 224 l 224 (246)
-
T Consensus 310 ~ 310 (403)
T COG1221 310 S 310 (403)
T ss_pred C
T ss_conf 5
No 148
>KOG1968 consensus
Probab=97.81 E-value=7.2e-05 Score=49.85 Aligned_cols=163 Identities=17% Similarity=0.190 Sum_probs=105.6
Q ss_pred HHHHHHHHH------------HCCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHH-------------H-HHHH
Q ss_conf 999999851------------016788-499987877786889999998627620135676-------------4-4454
Q gi|254780567|r 51 QAVRLIDSW------------PSWPSR-VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAK-------------S-LDSI 103 (246)
Q Consensus 51 ~A~~~i~~~------------~~~~~~-~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~-------------~-~~~~ 103 (246)
.+.+|+..| +..... .+.++|++|.|||--+++.|...+.......+. . ....
T Consensus 331 ~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~ 410 (871)
T KOG1968 331 KASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSH 410 (871)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHCCCCCC
T ss_conf 66658876221333540026861566778873178877720567663012065401047543344227776640244664
Q ss_pred HHHH--------------HHHHHHHHHHCCCCCCHHHHHHHHHH-HCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEE
Q ss_conf 6666--------------66533433210037610335455543-11234215640354320022345667885212224
Q gi|254780567|r 104 LIDT--------------RKPVLLEDIDLLDFNDTQLFHIINSI-HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168 (246)
Q Consensus 104 ~~~~--------------~~~i~iddi~~~~~~ee~lf~l~n~~-~~~~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~ 168 (246)
.+.. .-++++|++++..+....++.-+..+ ....+++++++...- ++..++--+++.-+
T Consensus 411 si~~~~~~~~~~~~~~~~~~vil~devD~~~~~dRg~v~~l~~l~~ks~~Piv~~cndr~------~p~sr~~~~~~~~l 484 (871)
T KOG1968 411 SIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGEDRGGVSKLSSLCKKSSRPLVCTCNDRN------LPKSRALSRACSDL 484 (871)
T ss_pred CHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC------CCCCCCHHHHCCEE
T ss_conf 000111111330004666069997425544200013699999999863577688733777------76652022320023
Q ss_pred EECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 507889789999999986662897988999999940667989999999999
Q gi|254780567|r 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 (246)
Q Consensus 169 ~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~L 219 (246)
.+..|+-+.+..-+...+...++.+++++++-+.+....+++.++..+...
T Consensus 485 ~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~~~DiR~~i~~lq~~ 535 (871)
T KOG1968 485 RFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLSGGDIRQIIMQLQFW 535 (871)
T ss_pred EECCCCHHHHHHHHHHHHCCCCEECCCHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 404885777776665330246424172788999875064799999877644
No 149
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=97.80 E-value=0.00063 Score=44.05 Aligned_cols=131 Identities=16% Similarity=0.126 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHCCCCCCHH----HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHH-HHCCEEEECCC---CHHHH
Q ss_conf 6665334332100376103----3545554311234215640354320022345667885-21222450788---97899
Q gi|254780567|r 107 TRKPVLLEDIDLLDFNDTQ----LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL-KAATVVKISLP---DDDFL 178 (246)
Q Consensus 107 ~~~~i~iddi~~~~~~ee~----lf~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl-~~g~~~~I~~p---dde~~ 178 (246)
..+.+++.+.....+.... +-..+...- ....++++....+.. ...+.--+ +.|.+.+...| +.+.+
T Consensus 61 ~~RlVvvk~a~~~~~~~~~~~~~l~~~l~~~p-~~t~lv~~~~~k~D~----R~K~~K~l~k~~~~~ef~~~~~~~~~~l 135 (326)
T PRK07452 61 GGRLVWLKNSPLCQGCSEELLAELERTLPLIP-ENTHLLLTNTKKPDG----RLKSTKLLQKLAEEKEFSLPPPWDGEGQ 135 (326)
T ss_pred CCEEEEEECCCCCCCCCHHHHHHHHHHHHCCC-CCEEEEEEECCCCCH----HHHHHHHHHHHEEEEEECCCCCCCHHHH
T ss_conf 85599983661002487889999999861799-975999984676323----7787899984011345406886579999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 9999998666289798899999994066798999999999999999847787889999999867
Q gi|254780567|r 179 EKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 (246)
Q Consensus 179 ~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~ITi~lvk~vL~~~ 242 (246)
...+.+.+...|.+|+++++++++.++..++..+.+-+++|..++...++.||...|..+....
T Consensus 136 ~~wi~~~~~~~g~~i~~~a~~~Lv~~~G~dl~~l~~EleKL~ly~~~~~~~It~e~V~~lv~~~ 199 (326)
T PRK07452 136 KQLVERTAQELGVKLTPEAAELLAEAVGNDSRRLYNELEKLALYAENSEKPISAEDVKALVSNT 199 (326)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCC
T ss_conf 9999999998699989999999999868439999999999998628999706899999882776
No 150
>KOG0729 consensus
Probab=97.79 E-value=4.3e-05 Score=51.20 Aligned_cols=162 Identities=15% Similarity=0.245 Sum_probs=89.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH----------------HHHHHHHHHHHHHHCCCC-----
Q ss_conf 78849998787778688999999862762013567644454----------------666666533433210037-----
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI----------------LIDTRKPVLLEDIDLLDF----- 121 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~iddi~~~~~----- 121 (246)
|-+.+.+|||+|+|||-+++|.+|.+.|-++..+-..+... ......++.+|.++.+.+
T Consensus 210 PPKGvllyGPPGtGKTL~ARAVANRTdAcFIRViGSELVQKYvGEGARMVRElFeMAr~KKACiiFFDEiDAiGGaRFDD 289 (435)
T KOG0729 210 PPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDD 289 (435)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCC
T ss_conf 98733786899986108999874566745876311899999862468999999998523652799841010226720357
Q ss_pred ----C---CHHHHHHHHHHH---CCC-CCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCC
Q ss_conf ----6---103354555431---123-42156403543200223456678852122245078897899999999866628
Q gi|254780567|r 122 ----N---DTQLFHIINSIH---QYD-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 (246)
Q Consensus 122 ----~---ee~lf~l~n~~~---~~~-~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~ 190 (246)
+ |..++.++|.+. -.| -+++++.+ .|..++-. |.--=+.---++...||.+-+..|++-++ +.
T Consensus 290 g~ggDNEVQRTMLEli~QLDGFDpRGNIKVlmATN-RPdtLDpA---LlRPGRlDRKVEF~LPDlegR~~I~kIHa--ks 363 (435)
T KOG0729 290 GAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATN-RPDTLDPA---LLRPGRLDRKVEFGLPDLEGRTHIFKIHA--KS 363 (435)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECC-CCCCCCHH---HCCCCCCCCCEECCCCCCCCCCEEEEEEC--CC
T ss_conf 88872799999999998603778888758986348-98876876---62876423112105876235512577741--11
Q ss_pred CCCCHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9798899999994066--798999999999999999847787
Q gi|254780567|r 191 IFIDKKLAAYIVQRME--RSLVFAEKLVDKMDNLALSRGMGI 230 (246)
Q Consensus 191 i~l~~~v~~yl~~r~~--Rs~~~l~~~l~~Ld~~sl~~kr~I 230 (246)
+.++.++---|+-|+. .+-.+++++-..---+++...|++
T Consensus 364 MsverdIR~eLlarLCpnsTGAeiRSVCtEAGMfAIraRRkv 405 (435)
T KOG0729 364 MSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKV 405 (435)
T ss_pred CCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 442322169999865889742578888877437888877622
No 151
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=97.79 E-value=0.0016 Score=41.60 Aligned_cols=105 Identities=19% Similarity=0.140 Sum_probs=77.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 34215640354320022345667885212224507889789999999986662897988999999940667989999999
Q gi|254780567|r 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216 (246)
Q Consensus 137 ~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l 216 (246)
...+++........-.-..+-+. .++.+.++...+++.+.+...+.+.+...|+.+++++++|++.+++.+...+..-+
T Consensus 105 ~~~~l~~~~~kl~~~~~~~k~~~-~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~i~~~a~~~L~~~~~~nl~~i~~Ei 183 (334)
T COG1466 105 TDLLLLVESNKLDKAKKLTKWLK-KLAKAVVVECKPLDEAELPQWIKKRAKELGLKIDQEAIQLLLEALGGNLLAIAQEI 183 (334)
T ss_pred CCEEEEEECCCCCHHHHHHHHHH-HHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 86899996188752778789888-74447346625887788999999999991898899999999998588299999999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHC
Q ss_conf 9999999984778788999999986741
Q gi|254780567|r 217 DKMDNLALSRGMGITRSLAAEVLKETQQ 244 (246)
Q Consensus 217 ~~Ld~~sl~~kr~ITi~lvk~vL~~~~~ 244 (246)
++|.-++ .++.||..-|++++.+...
T Consensus 184 ~KL~l~~--~~~~I~~~~V~~~v~~~~~ 209 (334)
T COG1466 184 EKLALYA--GDKEITLEDVEEVVSDVAE 209 (334)
T ss_pred HHHHHHC--CCCCCCHHHHHHHHCCCCC
T ss_conf 9998747--8986679999999736455
No 152
>pfam07728 AAA_5 AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=97.78 E-value=1.6e-05 Score=53.84 Aligned_cols=23 Identities=48% Similarity=0.645 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 49998787778688999999862
Q gi|254780567|r 66 VVILVGPSGSGKSCLANIWSDKS 88 (246)
Q Consensus 66 ~l~i~G~~GsGKTHLl~a~~~~~ 88 (246)
.++|+||+|+|||+|++.+++..
T Consensus 1 ~vll~Gp~G~GKT~la~~la~~l 23 (139)
T pfam07728 1 GVLLVGPPGTGKSELAERLAAAL 23 (139)
T ss_pred CEEEECCCCCHHHHHHHHHHHHC
T ss_conf 98999899756999999999980
No 153
>KOG2228 consensus
Probab=97.76 E-value=0.00016 Score=47.71 Aligned_cols=144 Identities=18% Similarity=0.244 Sum_probs=86.9
Q ss_pred EEECCCHHHHHHHHHH-HHCCCCCEEEEECCCCCCHHHHHHHH-HH--HHCCCCH---------H------HHHHH--HH
Q ss_conf 1653618999999985-10167884999878777868899999-98--6276201---------3------56764--44
Q gi|254780567|r 43 LLVHSAIEQAVRLIDS-WPSWPSRVVILVGPSGSGKSCLANIW-SD--KSRSTRF---------S------NIAKS--LD 101 (246)
Q Consensus 43 Fiv~~~N~~A~~~i~~-~~~~~~~~l~i~G~~GsGKTHLl~a~-~~--~~~~~~~---------~------~~~~~--~~ 101 (246)
|.+-++-...+.|+++ ...+++|.+.|.||.|||||.|.... .. +.+..++ . .++.. ..
T Consensus 27 ~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e 106 (408)
T KOG2228 27 FGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLALE 106 (408)
T ss_pred EEHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf 00587899999999999984477726998147788167407787667751772799987850015589999999999999
Q ss_pred HH--------HHHH----------------HH-HHHHHHHHCCC--CCCHHHHHHHHHHHCCCCCEEEEE-CCCCCCHHH
Q ss_conf 54--------6666----------------66-53343321003--761033545554311234215640-354320022
Q gi|254780567|r 102 SI--------LIDT----------------RK-PVLLEDIDLLD--FNDTQLFHIINSIHQYDSSLLMTA-RTFPVSWGV 153 (246)
Q Consensus 102 ~~--------~~~~----------------~~-~i~iddi~~~~--~~ee~lf~l~n~~~~~~~~iilts-~~~p~~~~~ 153 (246)
.. +.+. .. +.++|.++... ..|..++|+|+-......++.+.+ +..-.-+.-
T Consensus 107 ~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~lE~ 186 (408)
T KOG2228 107 LNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDILEL 186 (408)
T ss_pred HHHHHEEECCCCHHHHHHHHHHHCCCCCCCCEEEEEEEHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHH
T ss_conf 75321242253346999999873378778851999831000246403567899998887624798699985032338999
Q ss_pred HHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHH
Q ss_conf 345667885212224507889789999999986
Q gi|254780567|r 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 (246)
Q Consensus 154 ~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~ 186 (246)
..++.+|||+-..++=.++..-+.-..+.++..
T Consensus 187 LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228 187 LEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHH
T ss_conf 999987433552462269888588999999973
No 154
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.75 E-value=0.0015 Score=41.66 Aligned_cols=161 Identities=16% Similarity=0.145 Sum_probs=92.5
Q ss_pred HHHCC-CCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHH-----HHHHHHHHHH------HHHHHHHHHCCCCCCH-
Q ss_conf 51016-788499987877786889999998627620135676-----4445466666------6533433210037610-
Q gi|254780567|r 58 SWPSW-PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAK-----SLDSILIDTR------KPVLLEDIDLLDFNDT- 124 (246)
Q Consensus 58 ~~~~~-~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~-----~~~~~~~~~~------~~i~iddi~~~~~~ee- 124 (246)
.+..+ |.|.+.+||..|.|||.|..|+-+++......-... .......... -++..||..+-.++..
T Consensus 78 ~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~y 157 (287)
T COG2607 78 QFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLATLPDLVELLRARPEKFILFCDDLSFEEGDDAY 157 (287)
T ss_pred HHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHH
T ss_conf 99728865236776377777479999999998741770799768888657999999961886089995677777781389
Q ss_pred -HHHHHHHHHHCC-CCCEEEEE--------------------CCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHH
Q ss_conf -335455543112-34215640--------------------35432002234566788521222450788978999999
Q gi|254780567|r 125 -QLFHIINSIHQY-DSSLLMTA--------------------RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 (246)
Q Consensus 125 -~lf~l~n~~~~~-~~~iilts--------------------~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il 182 (246)
.|=..+..-.+. -..+++.+ ..+|++ ...+.+.=-=+-|+-....++|.++-.+++
T Consensus 158 K~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~e--aveEKlSlSDRFGLwL~F~~~~Q~~YL~~V 235 (287)
T COG2607 158 KALKSALEGGVEGRPANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSE--AVEEKLSLSDRFGLWLSFYPCDQDEYLKIV 235 (287)
T ss_pred HHHHHHHCCCCCCCCCEEEEEEECCCCCCCCHHHHHCCCCCCCCCHHH--HHHHHHCHHHHCCEEECCCCCCHHHHHHHH
T ss_conf 999998538855688707999715875336276642778402358067--787762546423404503687889999999
Q ss_pred HHHHHHCCCCCCH-----HHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 9986662897988-----9999999406679899999999999
Q gi|254780567|r 183 VKMFADRQIFIDK-----KLAAYIVQRMERSLVFAEKLVDKMD 220 (246)
Q Consensus 183 ~k~~~~r~i~l~~-----~v~~yl~~r~~Rs~~~l~~~l~~Ld 220 (246)
..+++.-++.+++ ++++|-..|-.||-+.+-..+..+.
T Consensus 236 ~~~a~~~~l~~~~e~l~~eAl~WAt~rg~RSGR~A~QF~~~~~ 278 (287)
T COG2607 236 DHYAKHFGLDISDEELHAEALQWATTRGGRSGRVAWQFIRDLA 278 (287)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 9999985999887899999999998618984275999999998
No 155
>KOG2383 consensus
Probab=97.74 E-value=0.0001 Score=48.88 Aligned_cols=89 Identities=16% Similarity=0.256 Sum_probs=48.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCC-------CCHHH---H------------------H--------HHHHHHHHHH
Q ss_conf 884999878777868899999986276-------20135---6------------------7--------6444546666
Q gi|254780567|r 64 SRVVILVGPSGSGKSCLANIWSDKSRS-------TRFSN---I------------------A--------KSLDSILIDT 107 (246)
Q Consensus 64 ~~~l~i~G~~GsGKTHLl~a~~~~~~~-------~~~~~---~------------------~--------~~~~~~~~~~ 107 (246)
-+.+||||..|||||-|+--+-..... ++... . + ..........
T Consensus 114 PkGlYlYG~VGcGKTmLMDlFy~~~~~i~rkqRvHFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~vA~eIa~e 193 (467)
T KOG2383 114 PKGLYLYGSVGCGKTMLMDLFYDALPPIWRKQRVHFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPVVADEIAEE 193 (467)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 84689963567544677887763278401344403999999999999999984165465533346678617899998550
Q ss_pred HHHHHHHHHHCCCCCCH-HHHHHHHHHHCCCCCEEEEECCCCCCHH
Q ss_conf 66533433210037610-3354555431123421564035432002
Q gi|254780567|r 108 RKPVLLEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWG 152 (246)
Q Consensus 108 ~~~i~iddi~~~~~~ee-~lf~l~n~~~~~~~~iilts~~~p~~~~ 152 (246)
..++|+|.++..+--.- .|=-+|-++..+|.-++-||+.+|.++-
T Consensus 194 a~lLCFDEfQVTDVADAmiL~rLf~~Lf~~GvVlvATSNR~P~dLY 239 (467)
T KOG2383 194 AILLCFDEFQVTDVADAMILKRLFEHLFKNGVVLVATSNRAPEDLY 239 (467)
T ss_pred CEEEEECHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHH
T ss_conf 3034312010136889999999999997387599982789858886
No 156
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.72 E-value=0.00067 Score=43.88 Aligned_cols=149 Identities=17% Similarity=0.205 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHC-C-CCCEEEEECCCCCCHHHHHHHHHHHHCCCCH---------------HH-HHHHH-------HHHH
Q ss_conf 999999985101-6-7884999878777868899999986276201---------------35-67644-------4546
Q gi|254780567|r 50 EQAVRLIDSWPS-W-PSRVVILVGPSGSGKSCLANIWSDKSRSTRF---------------SN-IAKSL-------DSIL 104 (246)
Q Consensus 50 ~~A~~~i~~~~~-~-~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~---------------~~-~~~~~-------~~~~ 104 (246)
..++..+++... + -.....++||+|+||+.++.+++..-..... .. ..... ....
T Consensus 12 ~~i~~~L~~~i~~~rl~HA~Lf~Gp~G~GK~~~A~~~A~~LlC~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~i~ 91 (329)
T PRK08058 12 PIVVKMLQNSIAKNRLAHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIESGNHPDVHLVAPDGQSIK 91 (329)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCC
T ss_conf 99999999999859966156557899988999999999997399999999887888999987699997677456614077
Q ss_pred ----------------HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHCCC--CCEEEEECCCCCCHHHHHHHHHHHHHHC
Q ss_conf ----------------666665334332100376-103354555431123--4215640354320022345667885212
Q gi|254780567|r 105 ----------------IDTRKPVLLEDIDLLDFN-DTQLFHIINSIHQYD--SSLLMTARTFPVSWGVCLPDLCSRLKAA 165 (246)
Q Consensus 105 ----------------~~~~~~i~iddi~~~~~~-ee~lf~l~n~~~~~~--~~iilts~~~p~~~~~~l~DL~SRl~~g 165 (246)
...++++++|+.+.++.. ..+|+-++ .+-. ...+++++ .|. -.+|-.+||+.
T Consensus 92 idqiR~L~~~~~~~p~~g~~KV~II~~Ae~m~~~AaNALLKtL---EEPp~~t~fIL~t~-~~~---~lLpTI~SRCq-- 162 (329)
T PRK08058 92 KDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFL---EEPSGDTTAILLTE-NKH---QILPTILSRCQ-- 162 (329)
T ss_pred HHHHHHHHHHHCCCCCCCCCEEEEEECHHHHCHHHHHHHHHHH---HCCCCCCEEEEEEC-CHH---HHHHHHHHCCE--
T ss_conf 9999999999643875788679997347762999999999986---46897867998729-966---64368863142--
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 22450788978999999998666289798899999994066798999999
Q gi|254780567|r 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215 (246)
Q Consensus 166 ~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~ 215 (246)
.+.+.+|+.+.....|.. +|+ +++.. .++.++..++..+..+
T Consensus 163 -~i~f~~~~~~~i~~~L~~----~~i--~~~~a-~l~a~~~gs~~~A~~l 204 (329)
T PRK08058 163 -VVEFRPLPPESLIQRLQE----EGI--SESLA-TLLAQLTNSVEEALAL 204 (329)
T ss_pred -EEECCCCCHHHHHHHHHH----CCC--CHHHH-HHHHHHCCCHHHHHHH
T ss_conf -565889999999999998----799--98999-9999878999999988
No 157
>pfam00158 Sigma54_activat Sigma-54 interaction domain.
Probab=97.71 E-value=0.00014 Score=48.12 Aligned_cols=120 Identities=18% Similarity=0.245 Sum_probs=70.9
Q ss_pred EECCCHH--HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHC---CCC--HHHHHHHHH--HH--H--------
Q ss_conf 6536189--999999851016788499987877786889999998627---620--135676444--54--6--------
Q gi|254780567|r 44 LVHSAIE--QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR---STR--FSNIAKSLD--SI--L-------- 104 (246)
Q Consensus 44 iv~~~N~--~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~---~~~--~~~~~~~~~--~~--~-------- 104 (246)
+||.|-. ..++.+...... ..|++|.|++|+||+.+++++-+... .-+ +.+...... .. +
T Consensus 1 lIG~S~~m~~l~~~i~~~a~~-~~pVLI~GE~GtGK~~lAr~IH~~S~r~~~pfi~vnc~~~~~~~le~~LFG~~~g~f~ 79 (168)
T pfam00158 1 LIGESPAMQEVLELAKRVAPT-DATVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFT 79 (168)
T ss_pred CEECCHHHHHHHHHHHHHHCC-CCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCC
T ss_conf 973899999999999999588-9988998999888899999999852435688312567899877999987587667668
Q ss_pred -----------HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH----------CCCCCEEEEECCCCCCH---HHHHHHHH
Q ss_conf -----------666665334332100376-103354555431----------12342156403543200---22345667
Q gi|254780567|r 105 -----------IDTRKPVLLEDIDLLDFN-DTQLFHIINSIH----------QYDSSLLMTARTFPVSW---GVCLPDLC 159 (246)
Q Consensus 105 -----------~~~~~~i~iddi~~~~~~-ee~lf~l~n~~~----------~~~~~iilts~~~p~~~---~~~l~DL~ 159 (246)
...-..+.+|+++.++-. |..|++++..-. ..+.+++.+++.++.++ ..+.+||-
T Consensus 80 ga~~~~~G~le~A~gGTL~LdeI~~L~~~~Q~~Ll~~L~~~~~~~~g~~~~~~~~vRiIast~~~L~~~v~~G~Fr~DLy 159 (168)
T pfam00158 80 GAVSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLY 159 (168)
T ss_pred CCCCCCCCCEEECCCCEEECCCHHHCCHHHHHHHHHHHHCCEEEECCCCCEEEEEEEEEEECCCCHHHHHHCCCCHHHHH
T ss_conf 98757899642269987880244139999999999998579699779984588854999965988999988399639988
Q ss_pred HHHHH
Q ss_conf 88521
Q gi|254780567|r 160 SRLKA 164 (246)
Q Consensus 160 SRl~~ 164 (246)
-||+.
T Consensus 160 yrLnv 164 (168)
T pfam00158 160 YRLNV 164 (168)
T ss_pred HHHCE
T ss_conf 88652
No 158
>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Probab=97.69 E-value=0.00032 Score=45.87 Aligned_cols=57 Identities=23% Similarity=0.253 Sum_probs=39.8
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 354555431123421564035432002234566788521222450788978999999998666
Q gi|254780567|r 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 (246)
Q Consensus 126 lf~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~ 188 (246)
+-.++..-.-.+.++++||+.. ...++...+.....++|..-+++.....+.+++.+
T Consensus 108 l~~ll~~~~lp~~~vliTsRp~------~~~~l~~~~~~~~~~ei~GFs~~~~~~yi~~~F~~ 164 (165)
T pfam05729 108 LSSLLRKKLLPGASLLLTSRPD------ALRDLRRGLEEPRYLEVLGFSEEDRKQYVRKYFSD 164 (165)
T ss_pred HHHHHHHCCCCCCEEEEEECCC------HHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCC
T ss_conf 9999841527886499996803------79885776488718998899999999999986799
No 159
>KOG0736 consensus
Probab=97.69 E-value=0.00043 Score=45.09 Aligned_cols=176 Identities=16% Similarity=0.182 Sum_probs=85.3
Q ss_pred CCCCCEEECCCHHHHHHHH---HHHHCCCC-------CEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHH-------
Q ss_conf 8845416536189999999---85101678-------849998787778688999999862762013567644-------
Q gi|254780567|r 38 ISRDDLLVHSAIEQAVRLI---DSWPSWPS-------RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL------- 100 (246)
Q Consensus 38 ~~~dnFiv~~~N~~A~~~i---~~~~~~~~-------~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~------- 100 (246)
....||.-++--..-+..+ -.....|+ ..+.++|++|||||.+..+.|.+.+.+.+...-.++
T Consensus 395 ~~l~n~~~~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~ 474 (953)
T KOG0736 395 STLWNSLSPPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASH 474 (953)
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHCCCCCCCHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHCCCCH
T ss_conf 78751588766027999999984865585300133553799867999875799999999838725701389886436331
Q ss_pred HHHHHH-----H----HHHHHHHHHHCCCCCC-----HHHHHHHHHHHC------CCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 454666-----6----6653343321003761-----033545554311------2342156403543200223456678
Q gi|254780567|r 101 DSILID-----T----RKPVLLEDIDLLDFND-----TQLFHIINSIHQ------YDSSLLMTARTFPVSWGVCLPDLCS 160 (246)
Q Consensus 101 ~~~~~~-----~----~~~i~iddi~~~~~~e-----e~lf~l~n~~~~------~~~~iilts~~~p~~~~~~l~DL~S 160 (246)
...... + ...+++-+++.+..++ -.+...++...+ ...+.++.++... +...-++.+|
T Consensus 475 ~etkl~~~f~~a~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s--~~~lp~~i~~ 552 (953)
T KOG0736 475 TETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSS--IEDLPADIQS 552 (953)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCC--CCCCCHHHHH
T ss_conf 37899999998752686289872242455337774427799999999720235677996599996253--0239878987
Q ss_pred HHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHH-HHHHCCC-CCHHHHHHHHHHH
Q ss_conf 852122245078897899999999866628979889999-9994066-7989999999999
Q gi|254780567|r 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA-YIVQRME-RSLVFAEKLVDKM 219 (246)
Q Consensus 161 Rl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~-yl~~r~~-Rs~~~l~~~l~~L 219 (246)
-+. ..++++.|+++.|..+++-+....- ++++|.. -++.+.+ -+++++..++..+
T Consensus 553 ~f~--~ei~~~~lse~qRl~iLq~y~~~~~--~n~~v~~k~~a~~t~gfs~~~L~~l~~~~ 609 (953)
T KOG0736 553 LFL--HEIEVPALSEEQRLEILQWYLNHLP--LNQDVNLKQLARKTSGFSFGDLEALVAHS 609 (953)
T ss_pred HHH--HHCCCCCCCHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHCCCCCHHHHHHHHCCC
T ss_conf 526--5213778887889999999983065--23577878999865898777799771475
No 160
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.66 E-value=0.001 Score=42.75 Aligned_cols=149 Identities=15% Similarity=0.173 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHC-C-CCCEEEEECCCCCCHHHHHHHHHHHHCCCCHH------H---HHHHHH-H---------------
Q ss_conf 999999985101-6-78849998787778688999999862762013------5---676444-5---------------
Q gi|254780567|r 50 EQAVRLIDSWPS-W-PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------N---IAKSLD-S--------------- 102 (246)
Q Consensus 50 ~~A~~~i~~~~~-~-~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~------~---~~~~~~-~--------------- 102 (246)
+.++..+.+..+ + -.+.+.++||+|+||+.++.++++..-..... + ...... +
T Consensus 10 ~~~~~~L~~~i~~~rl~HA~Lf~Gp~G~GK~~~A~~~A~~llc~~~~~~~~~~~~~~i~~g~HPD~~~i~~~~~~~~~k~ 89 (319)
T PRK08769 10 QRAFDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPALAQRTRQLIAAGTHPDLQLVSFIPNRTGDKL 89 (319)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCC
T ss_conf 89999999999769942068758999878999999999998379979765433889996689989687753444454311
Q ss_pred ---HHH----------------HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf ---466----------------66665334332100376-1033545554311234215640354320022345667885
Q gi|254780567|r 103 ---ILI----------------DTRKPVLLEDIDLLDFN-DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 (246)
Q Consensus 103 ---~~~----------------~~~~~i~iddi~~~~~~-ee~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl 162 (246)
..+ ..++++++|+.+.++.. ...|+-++.+=- .+..++++++ .|.. .++-++||+
T Consensus 90 k~~I~IdqiR~l~~~~~~~p~~g~~KV~IId~Ad~mn~~AaNalLK~LEEPp-~~~~~iL~~~-~~~~---ll~TI~SRC 164 (319)
T PRK08769 90 RTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRSACNALLKTLEEPS-PGRYLWLISA-QPAR---LPATIRSRC 164 (319)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHCCHHHHHHHHHHHCCCC-CCEEEEEEEC-CHHH---CCHHHHHCC
T ss_conf 2348699999999996137202795699980667528999999999822799-8848999869-9365---824776485
Q ss_pred HHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHH
Q ss_conf 21222450788978999999998666289798899999994066798999
Q gi|254780567|r 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 (246)
Q Consensus 163 ~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l 212 (246)
. .+.+++|+.+....-|... | +++......+.-..+.+..+
T Consensus 165 q---~~~~~~p~~~~~~~~L~~~----g--~~~~~a~~~l~~a~g~p~~A 205 (319)
T PRK08769 165 Q---RLEFKLPPAHEALAWLLSQ----G--VSERAAQEALDAARGHPGLA 205 (319)
T ss_pred E---EECCCCCCHHHHHHHHHHC----C--CCHHHHHHHHHHHCCCHHHH
T ss_conf 0---1118996999999999975----9--99189999999827996899
No 161
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=97.66 E-value=0.0016 Score=41.60 Aligned_cols=113 Identities=16% Similarity=0.252 Sum_probs=59.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCC----CHHHHHHHHHHHCCC
Q ss_conf 788499987877786889999998627620135676444546666665334332100-376----103354555431123
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL-DFN----DTQLFHIINSIHQYD 137 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iddi~~~-~~~----ee~lf~l~n~~~~~~ 137 (246)
+.+.++|.|..|||||.|++.+.+....+ ++- ..+.+.+--.+-.+..- .-. |..|+.-+..+ ...
T Consensus 126 ~~~~~vl~G~TG~GKT~iL~~L~~~G~qv-iDL-------EglAnHRGS~FG~~~~~~QPsQk~FEn~l~~~l~~~-~~~ 196 (311)
T TIGR03167 126 PFPLIVLGGMTGSGKTELLHALANAGAQV-LDL-------EGLANHRGSSFGALGLGPQPSQKRFENALAEALRRL-DPG 196 (311)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCCC-CCH-------HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-CCC
T ss_conf 68769987888877899999999769974-258-------998631465346888899978999999999999817-888
Q ss_pred CCEEEEECCCCCCHHHHHH-HHHHHHHHCCEEEECCCCHHHHHHHHHHH
Q ss_conf 4215640354320022345-66788521222450788978999999998
Q gi|254780567|r 138 SSLLMTARTFPVSWGVCLP-DLCSRLKAATVVKISLPDDDFLEKVIVKM 185 (246)
Q Consensus 138 ~~iilts~~~p~~~~~~l~-DL~SRl~~g~~~~I~~pdde~~~~il~k~ 185 (246)
+.+++=+ -+..=-...+| -|-.++..+.++.|+.|-++-...++.-+
T Consensus 197 ~~i~vE~-ES~~IG~~~iP~~l~~~M~~a~~i~i~~~le~Rv~~l~~~Y 244 (311)
T TIGR03167 197 RPIFVED-ESRRIGRVALPDALFEAMRAAPLVELEASLEERVERLVEEY 244 (311)
T ss_pred CCEEEEE-CCCCCCCCCCCHHHHHHHHCCCEEEEECCHHHHHHHHHHHH
T ss_conf 9569960-33130571389999999851998999899999999999986
No 162
>KOG0651 consensus
Probab=97.65 E-value=8.7e-05 Score=49.34 Aligned_cols=85 Identities=19% Similarity=0.336 Sum_probs=53.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----------------HHHHHHHHHHHHCCCCC----
Q ss_conf 7884999878777868899999986276201356764445466----------------66665334332100376----
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI----------------DTRKPVLLEDIDLLDFN---- 122 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~i~iddi~~~~~~---- 122 (246)
|-+.+.||||+|.|||.|+.+++...++.++...+..+....+ ....++.+|+++...+.
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se 244 (388)
T KOG0651 165 PPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSE 244 (388)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEHHHHHHCCEEECC
T ss_conf 88256876799986459999999865985477447666330026578899999977865275577510123114577335
Q ss_pred --------CHHHHHHHHHHH---CCC-CCEEEEECCC
Q ss_conf --------103354555431---123-4215640354
Q gi|254780567|r 123 --------DTQLFHIINSIH---QYD-SSLLMTARTF 147 (246)
Q Consensus 123 --------ee~lf~l~n~~~---~~~-~~iilts~~~ 147 (246)
+-.|..+.|... +.+ .+++++.+.+
T Consensus 245 ~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrp 281 (388)
T KOG0651 245 GTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRP 281 (388)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHCCCCCEEEECCCC
T ss_conf 5520599999999998742140120663179853886
No 163
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=97.64 E-value=0.004 Score=39.13 Aligned_cols=193 Identities=19% Similarity=0.141 Sum_probs=102.5
Q ss_pred EECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHC-------CCCHHHH------------------H-
Q ss_conf 6536189999999851016788499987877786889999998627-------6201356------------------7-
Q gi|254780567|r 44 LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR-------STRFSNI------------------A- 97 (246)
Q Consensus 44 iv~~~N~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~-------~~~~~~~------------------~- 97 (246)
|||. ...-.+++-...+-....+.|-|++|+|||.++++++.-.. ..|-... .
T Consensus 14 IvGQ-e~~k~aLll~av~p~iGgVLi~G~~GtgKStlvRala~lLP~i~~v~~~~f~~~p~~p~~~~~~~~~~~~~~~~~ 92 (347)
T CHL00081 14 IVGQ-EEMKLALLLNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKNDPFNSDPRDPDLMSDEVRERIRNGEKI 92 (347)
T ss_pred HCCH-HHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCC
T ss_conf 5384-999999999825788786998789987499999999985787422068876789898100242666543146667
Q ss_pred -------------HHH---------HHH---------H------HHHHHHHHHHHHHCCCCC-CHHHHHHH----HHH--
Q ss_conf -------------644---------454---------6------666665334332100376-10335455----543--
Q gi|254780567|r 98 -------------KSL---------DSI---------L------IDTRKPVLLEDIDLLDFN-DTQLFHII----NSI-- 133 (246)
Q Consensus 98 -------------~~~---------~~~---------~------~~~~~~i~iddi~~~~~~-ee~lf~l~----n~~-- 133 (246)
... +.. + .....++.+|+++..+.. ...|+... |.+
T Consensus 93 ~~~~~~~p~v~lPlgaTEDrv~GslDie~al~~G~~~f~pGlLa~A~rGiLyvDEINll~d~~v~~LLda~a~G~~~VER 172 (347)
T CHL00081 93 PTKKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDILLDSAASGWNTVER 172 (347)
T ss_pred CCEECCCCEEECCCCCCCCEECCCHHHHHHHHCCCCCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCEEEECC
T ss_conf 52114686253688885230114000998984587115653122203885886145432379999999998558089804
Q ss_pred ----HCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECC-CCHHHHHHHHHHHHH---------------------
Q ss_conf ----112342156403543200223456678852122245078-897899999999866---------------------
Q gi|254780567|r 134 ----HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL-PDDDFLEKVIVKMFA--------------------- 187 (246)
Q Consensus 134 ----~~~~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~-pdde~~~~il~k~~~--------------------- 187 (246)
...-.+.++.++..|.+-. ..|-|.-||. +.+.+.. +|.+.+..|++....
T Consensus 173 eG~S~~~Pa~F~liaT~NPeEge-Lrp~llDRF~--l~v~v~~~~~~e~R~eiv~~r~~f~~~p~~f~~~~~~~~~~l~~ 249 (347)
T CHL00081 173 EGISIRHPARFVLIGSGNPEEGE-LRPQLLDRFG--MHAEIRTVKDPELRVKIVEQRSNFDKNPENFREKYSESQDALKT 249 (347)
T ss_pred CCEEECCCCCEEEEECCCCCCCC-CCHHHHHHEE--EEEECCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_conf 64233057500688557865567-4888882632--26745887898999999999997651969999998878999999
Q ss_pred --------HCCCCCCHHHHHHHHHCCC----CCHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHH
Q ss_conf --------6289798899999994066----7989999999999999998477-878899999998
Q gi|254780567|r 188 --------DRQIFIDKKLAAYIVQRME----RSLVFAEKLVDKMDNLALSRGM-GITRSLAAEVLK 240 (246)
Q Consensus 188 --------~r~i~l~~~v~~yl~~r~~----Rs~~~l~~~l~~Ld~~sl~~kr-~ITi~lvk~vL~ 240 (246)
-.++.++++++.|++.... -+++.-+.++..--.+|...+| .+|..-++.+..
T Consensus 250 ~I~~Ar~~L~~V~v~~~~~~~i~~~~~~~~v~g~RA~I~l~raARA~AAL~GR~~V~~eDv~~aa~ 315 (347)
T CHL00081 250 QIILARQLLPNVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAFNGRDEVTPGDIEKVIT 315 (347)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 999998644773559999999999999848998718999999999999986998368999999999
No 164
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.62 E-value=0.0038 Score=39.23 Aligned_cols=208 Identities=12% Similarity=0.089 Sum_probs=111.7
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC----C-CHHHHHHH
Q ss_conf 034155888776688454165361899999998510167884999878777868899999986276----2-01356764
Q gi|254780567|r 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS----T-RFSNIAKS 99 (246)
Q Consensus 25 ~~Ql~l~~~~~~~~~~dnFiv~~~N~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~----~-~~~~~~~~ 99 (246)
+++++|-....+.+ +|...+-|+. +..+.....-....+.+.|+.|||||-+.++...-.+. . ++......
T Consensus 16 ~~~~pf~~~~~~~~---~~~~a~h~e~-l~~l~~~i~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s 91 (269)
T COG3267 16 FSRLPFSWDIQPGL---DYWAADHNEA-LLMLHAAIADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLS 91 (269)
T ss_pred HCCCCCCCCHHHHH---HHHHHHHHHH-HHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHH
T ss_conf 24488755403666---6432001599-9997777751785599974477763699999998557885179983576301
Q ss_pred H-----------HHH-------------------HHHHH--HHHHHHHHHCCCCCC-HHHHHHHHHHHCCCCC--EEEEE
Q ss_conf 4-----------454-------------------66666--653343321003761-0335455543112342--15640
Q gi|254780567|r 100 L-----------DSI-------------------LIDTR--KPVLLEDIDLLDFND-TQLFHIINSIHQYDSS--LLMTA 144 (246)
Q Consensus 100 ~-----------~~~-------------------~~~~~--~~i~iddi~~~~~~e-e~lf~l~n~~~~~~~~--iilts 144 (246)
. ... ..... -.+.+|+.|....+. |.+--+.|...+..+. +++.+
T Consensus 92 ~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~G 171 (269)
T COG3267 92 DATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIG 171 (269)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCHHHHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 78899999998405832006889999999999999817887378501676617548999999886203466721145507
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCE-EEECCCCHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHCCCCCHHHHHHHHHH-H
Q ss_conf 35432002234566788521222-4507889789999999986662897---98899999994066798999999999-9
Q gi|254780567|r 145 RTFPVSWGVCLPDLCSRLKAATV-VKISLPDDDFLEKVIVKMFADRQIF---IDKKLAAYIVQRMERSLVFAEKLVDK-M 219 (246)
Q Consensus 145 ~~~p~~~~~~l~DL~SRl~~g~~-~~I~~pdde~~~~il~k~~~~r~i~---l~~~v~~yl~~r~~Rs~~~l~~~l~~-L 219 (246)
-...... ...+-++-=-.-..+ ++++|.+++.....|+..+..-+-. ++++.+..+......-++.+..+... +
T Consensus 172 qp~L~~~-lr~~~l~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~Al 250 (269)
T COG3267 172 QPKLRPR-LRLPVLRELEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATLAL 250 (269)
T ss_pred CCCCCHH-HCHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 8011435-442889854316778995388674789999999985058996667705789999985255489999889999
Q ss_pred HHHHHHHCCCCCHHHHHH
Q ss_conf 999998477878899999
Q gi|254780567|r 220 DNLALSRGMGITRSLAAE 237 (246)
Q Consensus 220 d~~sl~~kr~ITi~lvk~ 237 (246)
+..+-..+.+|+-..++.
T Consensus 251 ~~a~~a~~~~v~~a~~~~ 268 (269)
T COG3267 251 DAAYSAGEDGVSEAEIKN 268 (269)
T ss_pred HHHHHCCCCCCCHHHCCC
T ss_conf 999873997512565135
No 165
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.00076 Score=43.54 Aligned_cols=195 Identities=14% Similarity=0.137 Sum_probs=104.1
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC-C--------CHH
Q ss_conf 1034155888776688454165361899999998510167884999878777868899999986276-2--------013
Q gi|254780567|r 24 KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS-T--------RFS 94 (246)
Q Consensus 24 ~~~Ql~l~~~~~~~~~~dnFiv~~~N~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~-~--------~~~ 94 (246)
..++.+.++.....-..=|=++|- .++.-.+++-+.....|.-++.|++|+|||-+...++...-. . -+.
T Consensus 152 ~L~~~~~dlt~~Ar~gklDPvIGR-d~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~ 230 (786)
T COG0542 152 ALEKYTRDLTELAREGKLDPVIGR-DEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIY 230 (786)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCH-HHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEE
T ss_conf 699874114799865898877374-7999999999835688998476689888999998999997469999787588799
Q ss_pred HHHH---------------HH----HHHHHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 5676---------------44----45466666653343321003761------03354555431123421564035432
Q gi|254780567|r 95 NIAK---------------SL----DSILIDTRKPVLLEDIDLLDFND------TQLFHIINSIHQYDSSLLMTARTFPV 149 (246)
Q Consensus 95 ~~~~---------------~~----~~~~~~~~~~i~iddi~~~~~~e------e~lf~l~n~~~~~~~~iilts~~~p~ 149 (246)
+.+. .+ ........-++.||.+|.+-|.- -..-+++--....|.--.+.++ ...
T Consensus 231 sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~g~a~DAaNiLKPaLARGeL~~IGAT-T~~ 309 (786)
T COG0542 231 SLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGAT-TLD 309 (786)
T ss_pred EECHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEC-CHH
T ss_conf 7148767464653573899999999998517984999823554057776666651256646778745873799735-589
Q ss_pred CH-HHHHHH--HHHHHHHCCEEEECCCCHHHHHHHHHHH----HHHCCCCCCHHHHHHHHHCCCCCHH---HHHHHHHHH
Q ss_conf 00-223456--6788521222450788978999999998----6662897988999999940667989---999999999
Q gi|254780567|r 150 SW-GVCLPD--LCSRLKAATVVKISLPDDDFLEKVIVKM----FADRQIFIDKKLAAYIVQRMERSLV---FAEKLVDKM 219 (246)
Q Consensus 150 ~~-~~~l~D--L~SRl~~g~~~~I~~pdde~~~~il~k~----~~~r~i~l~~~v~~yl~~r~~Rs~~---~l~~~l~~L 219 (246)
+. ..+.+| |.=||. .+.+.+|+.+....||+-. -.-.++.++++++...+.=..|-.. ---.+++.+
T Consensus 310 EYRk~iEKD~AL~RRFQ---~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLi 386 (786)
T COG0542 310 EYRKYIEKDAALERRFQ---KVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAIDLL 386 (786)
T ss_pred HHHHHHHHCHHHHHCCC---EEECCCCCHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 99887330667784675---102799898999999987788887706964337999999999986455678994677788
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780567|r 220 DNLA 223 (246)
Q Consensus 220 d~~s 223 (246)
|..+
T Consensus 387 DeA~ 390 (786)
T COG0542 387 DEAG 390 (786)
T ss_pred HHHH
T ss_conf 9999
No 166
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=97.61 E-value=0.0055 Score=38.24 Aligned_cols=100 Identities=17% Similarity=0.115 Sum_probs=57.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCH-HHHHHHHHH-----------------------------HHH
Q ss_conf 42156403543200223456678852122245078897-899999999-----------------------------866
Q gi|254780567|r 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD-DFLEKVIVK-----------------------------MFA 187 (246)
Q Consensus 138 ~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdd-e~~~~il~k-----------------------------~~~ 187 (246)
.+.++.+..+|.+-. ..+.|.-|| ++.+++..|.+ +.+..++++ ...
T Consensus 170 arF~LVatmNPeEg~-Lrp~lLDRf--~l~v~v~~~~~~~~r~eiv~r~~~~~~~~~~~~~~~~~e~~~l~~~i~~Ar~~ 246 (334)
T PRK13407 170 ARFVLVGSGNPEEGE-LRPQLLDRF--GLSVEVRSPRDVETRVEVITRRDAYDADHDAFMAKWGAEDMQLRGRILGARAA 246 (334)
T ss_pred CCCEEEEEECCCCCC-CCHHHHHHH--CEEEEECCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 626589820888777-598998361--00687148788777668899999865387999998898999999999999875
Q ss_pred HCCCCCCHHHHHHHHHCCC----CCHHHHHHHHHHHH-HHHHHHCCCCCHHHHHHHHH
Q ss_conf 6289798899999994066----79899999999999-99998477878899999998
Q gi|254780567|r 188 DRQIFIDKKLAAYIVQRME----RSLVFAEKLVDKMD-NLALSRGMGITRSLAAEVLK 240 (246)
Q Consensus 188 ~r~i~l~~~v~~yl~~r~~----Rs~~~l~~~l~~Ld-~~sl~~kr~ITi~lvk~vL~ 240 (246)
..++.++++++.|++.-.- -+.+.-..++..-- ..++.....||..-++.+..
T Consensus 247 l~~v~~~d~~~~~~~~~~~~~~~~g~Ra~i~l~r~ARa~AaL~Gr~~V~~~dl~~aa~ 304 (334)
T PRK13407 247 LPQLKTPDTVLHDCAALCIALGSDGLRGELTLLRAARAQAAFEGAETVGRSHLRSVAT 304 (334)
T ss_pred HHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 1146899999999999999858987109999999999999974999789999999999
No 167
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=97.59 E-value=0.0064 Score=37.87 Aligned_cols=184 Identities=16% Similarity=0.150 Sum_probs=103.1
Q ss_pred HHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC--------CCHHHHHHHHHHH----------HHHHHHHHHHHHH
Q ss_conf 998510167884999878777868899999986276--------2013567644454----------6666665334332
Q gi|254780567|r 55 LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS--------TRFSNIAKSLDSI----------LIDTRKPVLLEDI 116 (246)
Q Consensus 55 ~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~--------~~~~~~~~~~~~~----------~~~~~~~i~iddi 116 (246)
.+.+ |....+.+++|||----+....+.+.+.... ..++......+.. .....+.+++++.
T Consensus 12 f~~~-p~~~~~~~LlyG~d~glv~e~~~~l~~~~~~~~~~~f~~~~l~~~el~~d~~~l~de~~t~slF~~~rlI~i~~~ 90 (343)
T PRK06585 12 FLAR-PDGKIRAVLLYGPDRGLVRERARRLAKSVVDDPDDPFAVVRLDGDELDADPARLEDEANTISLFGGRRLIWVRAG 90 (343)
T ss_pred HHHC-CCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHCCHHHHHHHHHCCCCCCCCEEEEEECC
T ss_conf 9819-864765899963876479999999999725566787415774799883399999999847687689848997268
Q ss_pred HCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 10037610335455543112342156403543200223456678852122245078897899999999866628979889
Q gi|254780567|r 117 DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196 (246)
Q Consensus 117 ~~~~~~ee~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~ 196 (246)
.. ...+.+-.++.. ......+|+.+..-.+.- .+-.+--.-..+.++..-+++...+...+...+...|+.++++
T Consensus 91 ~d--~~~~~l~~~l~~-~~~~~~lIi~a~~L~k~s--kLrk~~e~~~~~~~i~cY~d~~~~l~~~i~~~l~~~g~~i~~~ 165 (343)
T PRK06585 91 GK--SLAAALKALLAE-PPGDAFIVIEAGDLKKGS--SLRKLFETAASAAAIPCYADDERDLARLIDDELAKAGLRITPD 165 (343)
T ss_pred CH--HHHHHHHHHHHC-CCCCEEEEEECCCCCCCC--HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 72--569999999817-899828999738977311--8999998647869995006998899999999999829997799
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
Q ss_conf 9999994066798999999999999999847787889999999867418
Q gi|254780567|r 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 (246)
Q Consensus 197 v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~ITi~lvk~vL~~~~~~ 245 (246)
++++|+.+...+...+..-+++|.-++ ..+++||..-|.+++.+....
T Consensus 166 a~~~L~~~~g~d~~~~~~EleKL~ly~-~~~~~It~edv~~~v~~~~~~ 213 (343)
T PRK06585 166 ARAYLVALLGGDRLASRNEIEKLALYA-HGKGEITLDDVRAVVGDASAL 213 (343)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHH-CCCCCCCHHHHHHHHCCCCCC
T ss_conf 999999873427999999999999984-899978999999986864102
No 168
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.59 E-value=0.00047 Score=44.84 Aligned_cols=145 Identities=17% Similarity=0.284 Sum_probs=79.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHH--------------HHH----------------------H----
Q ss_conf 788499987877786889999998627620135676--------------444----------------------5----
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAK--------------SLD----------------------S---- 102 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~--------------~~~----------------------~---- 102 (246)
..+..++.+|.|.|||.|+..|........+...+. ... .
T Consensus 31 ~~~l~lv~APaG~GKTtl~a~w~~~~~~~~Wlsld~~d~~~~~f~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (903)
T PRK04841 31 NYRLVLVRSPAGYGKTTLASQWAAGKNNVGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAEKRQYASLTSLFA 110 (903)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCHHHHHH
T ss_conf 89979997799988999999998349985998588544899999999999999856543311231135566554999999
Q ss_pred HHH------HHHHHHHHHHHHCCCCCC--HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCC
Q ss_conf 466------666653343321003761--033545554311234215640354320022345667885212224507889
Q gi|254780567|r 103 ILI------DTRKPVLLEDIDLLDFND--TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 (246)
Q Consensus 103 ~~~------~~~~~i~iddi~~~~~~e--e~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pd 174 (246)
... ...-.+++||.|.+...+ +.+-.++.+ .-.+-.+|++|+..|+- -+.+|+ ..|.+.+|.+-|
T Consensus 111 ~l~~~l~~~~~~~~lvlDD~h~i~~~~~~~~l~~Ll~~-~p~~l~lvl~sR~~p~l---~l~~l~---~~~~l~~i~~~d 183 (903)
T PRK04841 111 QLFIELSDWHQPLYLVLDDYHLITNPEIHEAMRFFLRH-QPENLTLVVLSRNLPPL---GIANLR---VRDQLLEIGSQQ 183 (903)
T ss_pred HHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH-CCCCEEEEEEECCCCCC---CHHHHH---HCCEEEEECHHH
T ss_conf 99999755899869998683648886899999999983-89883899876899987---524577---459569986887
Q ss_pred HHHHHHHHHHHHHH-CCCCCCHHHHHHHHHCCCCCHHHHHH
Q ss_conf 78999999998666-28979889999999406679899999
Q gi|254780567|r 175 DDFLEKVIVKMFAD-RQIFIDKKLAAYIVQRMERSLVFAEK 214 (246)
Q Consensus 175 de~~~~il~k~~~~-r~i~l~~~v~~yl~~r~~Rs~~~l~~ 214 (246)
-..-..=....+.. .|..++++.++=|.++.+.=+..+.-
T Consensus 184 L~Ft~~E~~~~~~~~~g~~l~~~~~~~l~~~TeGW~a~l~L 224 (903)
T PRK04841 184 LAFDHQEAQQFFDQRLSSPIEAAESSRLCDRVEGWPTALQL 224 (903)
T ss_pred CCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHH
T ss_conf 59999999999986259999999999999970878999999
No 169
>KOG2170 consensus
Probab=97.58 E-value=0.0041 Score=39.03 Aligned_cols=198 Identities=11% Similarity=0.160 Sum_probs=101.9
Q ss_pred CCCCEEECCCH--HHHHHHHHH-HHCC-CCCEEE--EECCCCCCHHHHHHHHHHHHCCCCHHHHH-------HHHH-HHH
Q ss_conf 84541653618--999999985-1016-788499--98787778688999999862762013567-------6444-546
Q gi|254780567|r 39 SRDDLLVHSAI--EQAVRLIDS-WPSW-PSRVVI--LVGPSGSGKSCLANIWSDKSRSTRFSNIA-------KSLD-SIL 104 (246)
Q Consensus 39 ~~dnFiv~~~N--~~A~~~i~~-~~~~-~~~~l~--i~G~~GsGKTHLl~a~~~~~~~~~~~~~~-------~~~~-~~~ 104 (246)
++++.+.|.-= +..+.+++. |... |.+||. ++|++|+||.|..+++++..-.....+.. ..+. ...
T Consensus 79 dL~~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ 158 (344)
T KOG2170 79 DLARALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASK 158 (344)
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHH
T ss_conf 99998632087999999999998628999987589830899875648999999998751125626887655415997678
Q ss_pred HHHH-----------------HHHHHHHHHCCCCCC-HHH---HHHHH---HHHCCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 6666-----------------653343321003761-033---54555---43112342156403543200223456678
Q gi|254780567|r 105 IDTR-----------------KPVLLEDIDLLDFND-TQL---FHIIN---SIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 (246)
Q Consensus 105 ~~~~-----------------~~i~iddi~~~~~~e-e~l---f~l~n---~~~~~~~~iilts~~~p~~~~~~l~DL~S 160 (246)
+..+ .+.+.|+++.+..-- +++ +..+- .......-.|+.|+..-+++.-..-+..+
T Consensus 159 ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg~eI~~~aL~~~~ 238 (344)
T KOG2170 159 IEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGGSEIARIALENAR 238 (344)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEECHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99999999999999998557754873105435876999876663046321355455148999717861477999999997
Q ss_pred HHHHCCEEEECCCCHHHHHHHHHHHHHHC--C----CCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 85212224507889789999999986662--8----97988999999940667989999999999999998477878899
Q gi|254780567|r 161 RLKAATVVKISLPDDDFLEKVIVKMFADR--Q----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234 (246)
Q Consensus 161 Rl~~g~~~~I~~pdde~~~~il~k~~~~r--~----i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~ITi~l 234 (246)
+-..---.+++...-.+. ....+.+ | -.++...|+|.+.-.+=+++.+...+.. +-...+-.++..+
T Consensus 239 ~g~~re~~~l~~~E~~L~----~~~~n~~~~Gl~~S~li~~~lid~fIPFLPLek~hV~~C~r~---el~~rg~~~d~~~ 311 (344)
T KOG2170 239 NGKPREQLRLKSFEPALM----QSAFNEKAGGLVHSRLISNNLIDHFIPFLPLEKRHVRSCIRA---ELRKRGLAPDQDF 311 (344)
T ss_pred CCCCCCCCHHHHHHHHHH----HHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHH---HHHHCCCCCCHHH
T ss_conf 479756452655269998----755354456640142154667765057676238999999999---9986546552689
Q ss_pred HHHHHHHHH
Q ss_conf 999998674
Q gi|254780567|r 235 AAEVLKETQ 243 (246)
Q Consensus 235 vk~vL~~~~ 243 (246)
+.+|+++++
T Consensus 312 ~erva~~l~ 320 (344)
T KOG2170 312 VERVANSLS 320 (344)
T ss_pred HHHHHHHHC
T ss_conf 999998621
No 170
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.56 E-value=0.0013 Score=42.06 Aligned_cols=126 Identities=19% Similarity=0.259 Sum_probs=65.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCH---------HHHHH---HHH----------H----------------HHHH
Q ss_conf 84999878777868899999986276201---------35676---444----------5----------------4666
Q gi|254780567|r 65 RVVILVGPSGSGKSCLANIWSDKSRSTRF---------SNIAK---SLD----------S----------------ILID 106 (246)
Q Consensus 65 ~~l~i~G~~GsGKTHLl~a~~~~~~~~~~---------~~~~~---~~~----------~----------------~~~~ 106 (246)
....++||+|+|||.++.+++..-...-- .+... ... . ....
T Consensus 40 HAyLF~Gp~G~Gk~~~A~~~A~~l~C~~~~~~~cg~C~~C~~i~~g~hpDv~~i~p~~~~i~id~iR~l~~~~~~~p~~~ 119 (395)
T PRK07940 40 HAWLFTGPPGSGRSNAARAFAAALQCTDPGVPGCGECRACRTVLAGTHPDVRVVVPEGLSIGVDEVREIVQIAARRPTTG 119 (395)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 03763689987889999999999669999999998787899987689987189826877688999999999985273037
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCC-EEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHH
Q ss_conf 666533433210037610335455543112342-1564035432002234566788521222450788978999999998
Q gi|254780567|r 107 TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 (246)
Q Consensus 107 ~~~~i~iddi~~~~~~ee~lf~l~n~~~~~~~~-iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~ 185 (246)
.+++++||+.+.++ .++.-.++-.+.+-... +++.....|. -.+|-.+||+. .+.+.+|+.+.....|...
T Consensus 120 ~~kv~ii~~a~~m~--~~a~NalLKtLEEPp~~~~fiL~t~~~~---~llpTI~SRcq---~~~f~~~~~~~i~~~L~~~ 191 (395)
T PRK07940 120 RWRIVVIEDADRLT--ERAANALLKAVEEPPPRTVWLLCAPSVE---DVLPTIRSRCR---HVALRTPSVEAVADVLVRR 191 (395)
T ss_pred CCEEEEEECHHHHC--HHHHHHHHHHHCCCCCCEEEEEEECCHH---HHHHHHHHHHE---ECCCCCCCHHHHHHHHHHC
T ss_conf 95599980778748--9999999985217888869998739978---74468874400---0237999999999999870
Q ss_pred HHHCCCCCCHHHHHHHHH
Q ss_conf 666289798899999994
Q gi|254780567|r 186 FADRQIFIDKKLAAYIVQ 203 (246)
Q Consensus 186 ~~~r~i~l~~~v~~yl~~ 203 (246)
-.++++....++.
T Consensus 192 -----~gi~~~~A~~aA~ 204 (395)
T PRK07940 192 -----DGVDPETAQWAAR 204 (395)
T ss_pred -----CCCCHHHHHHHHH
T ss_conf -----1999899999999
No 171
>KOG0732 consensus
Probab=97.56 E-value=0.0011 Score=42.45 Aligned_cols=156 Identities=17% Similarity=0.210 Sum_probs=96.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCH----HHH--H-----------HHHHHHHHH----HHHHHHHHHHHCCC
Q ss_conf 67884999878777868899999986276201----356--7-----------644454666----66653343321003
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDKSRSTRF----SNI--A-----------KSLDSILID----TRKPVLLEDIDLLD 120 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~----~~~--~-----------~~~~~~~~~----~~~~i~iddi~~~~ 120 (246)
.|-+.+.++||+|+|||-.+.+++.......- ... + ..+...+.. ...++..|.++++.
T Consensus 297 tpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGla 376 (1080)
T KOG0732 297 TPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLA 376 (1080)
T ss_pred CCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHCCCHHHCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf 89863230289987256888866654054110202443148443325447577889988988744485177305556646
Q ss_pred ----CCCH--------HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf ----7610--------3354555431123421564035432002234566788521222450788978999999998666
Q gi|254780567|r 121 ----FNDT--------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 (246)
Q Consensus 121 ----~~ee--------~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~ 188 (246)
.++| .|+.+...+-..|..+|+.+...|..++ +-|+=+=+---.+....|+-+.+..|+.-+-..
T Consensus 377 pvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda~d---paLRRPgrfdref~f~lp~~~ar~~Il~Ihtrk 453 (1080)
T KOG0732 377 PVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDAID---PALRRPGRFDREFYFPLPDVDARAKILDIHTRK 453 (1080)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCC---HHHCCCCCCCEEEEEECCCHHHHHHHHHHHCCC
T ss_conf 56536677744567777887604777778658971567833246---544288666525750378667888999875157
Q ss_pred CCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 28979889999999406679899999999999
Q gi|254780567|r 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 (246)
Q Consensus 189 r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld 220 (246)
..=.++....+.+++....-.+.-..++.+..
T Consensus 454 w~~~i~~~l~~~la~~t~gy~gaDlkaLCTeA 485 (1080)
T KOG0732 454 WEPPISRELLLWLAEETSGYGGADLKALCTEA 485 (1080)
T ss_pred CCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 77887778999998862340057899888887
No 172
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=97.55 E-value=0.0035 Score=39.49 Aligned_cols=184 Identities=21% Similarity=0.261 Sum_probs=105.6
Q ss_pred EECCCHH--HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC---C--HHHHH--HHHHHH--HHH------
Q ss_conf 6536189--99999985101678849998787778688999999862762---0--13567--644454--666------
Q gi|254780567|r 44 LVHSAIE--QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST---R--FSNIA--KSLDSI--LID------ 106 (246)
Q Consensus 44 iv~~~N~--~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~---~--~~~~~--~~~~~~--~~~------ 106 (246)
++|.|=. ..+..+..... ..-+++|+|++|+||--+++++-+.+... + +.+.+ ...... +-.
T Consensus 143 liG~S~am~~l~~~i~kvA~-s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekGAFT 221 (464)
T COG2204 143 LVGESPAMQQLRRLIAKVAP-SDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKGAFT 221 (464)
T ss_pred CCCCCHHHHHHHHHHHHHHC-CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCC
T ss_conf 52069999999999999847-79978997789875899999998607445899256334648988877776145656767
Q ss_pred -------------HHHHHHHHHHHCCCCC-CHHHHHHHHHHH----------CCCCCEEEEECCCCCCH---HHHHHHHH
Q ss_conf -------------6665334332100376-103354555431----------12342156403543200---22345667
Q gi|254780567|r 107 -------------TRKPVLLEDIDLLDFN-DTQLFHIINSIH----------QYDSSLLMTARTFPVSW---GVCLPDLC 159 (246)
Q Consensus 107 -------------~~~~i~iddi~~~~~~-ee~lf~l~n~~~----------~~~~~iilts~~~p~~~---~~~l~DL~ 159 (246)
.-..+.+|.+.-++-. |..|+-.+..-. .-..+++-+++....+. .-+.+||-
T Consensus 222 GA~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~~~v~~G~FReDLy 301 (464)
T COG2204 222 GAITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLEEEVAAGRFREDLY 301 (464)
T ss_pred CCCCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEECCCCCEECEEEEEEEECCCCHHHHHHCCCCHHHHH
T ss_conf 76434576157737965873231109999999999998707067358886000016999605778999988197378888
Q ss_pred HHHHHCCEEEECCCC------H-H-HHHHHHHHHHHHCCC---CCCHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 885212224507889------7-8-999999998666289---7988999999940-66798999999999999999847
Q gi|254780567|r 160 SRLKAATVVKISLPD------D-D-FLEKVIVKMFADRQI---FIDKKLAAYIVQR-MERSLVFAEKLVDKMDNLALSRG 227 (246)
Q Consensus 160 SRl~~g~~~~I~~pd------d-e-~~~~il~k~~~~r~i---~l~~~v~~yl~~r-~~Rs~~~l~~~l~~Ld~~sl~~k 227 (246)
-||. |+.|.-|. | . +....+++.+...+. .++++.+..|..+ ++.+++.+.+++++. ..+..+
T Consensus 302 yRLn---V~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNVREL~N~ver~--~il~~~ 376 (464)
T COG2204 302 YRLN---VVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWPGNVRELENVVERA--VILSEG 376 (464)
T ss_pred HHHC---CCEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHH--HHCCCC
T ss_conf 6523---31104876223620079999999999999809998887999999997389981899999999999--851786
Q ss_pred CCCCHH
Q ss_conf 787889
Q gi|254780567|r 228 MGITRS 233 (246)
Q Consensus 228 r~ITi~ 233 (246)
..|+..
T Consensus 377 ~~i~~~ 382 (464)
T COG2204 377 PEIEVE 382 (464)
T ss_pred CCCCHH
T ss_conf 546654
No 173
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.54 E-value=0.0017 Score=41.46 Aligned_cols=127 Identities=12% Similarity=0.150 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHCC--CCCEEEEECCCCCCHHHHHHHHHHHHCCCCH---------------HHHHHH----HH------
Q ss_conf 89999999851016--7884999878777868899999986276201---------------356764----44------
Q gi|254780567|r 49 IEQAVRLIDSWPSW--PSRVVILVGPSGSGKSCLANIWSDKSRSTRF---------------SNIAKS----LD------ 101 (246)
Q Consensus 49 N~~A~~~i~~~~~~--~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~---------------~~~~~~----~~------ 101 (246)
|+..++.+++..+. -.....++||.|+|||.++..+++....... ...... ..
T Consensus 3 ~e~iv~~L~nai~~~klsHAYLF~G~~G~Gk~~~a~~~a~~l~~~~~~~~~~~~~~~~~~~id~~~~~i~~~~i~~~i~~ 82 (303)
T PRK07132 3 DNNIIKSLDNLAKQNKISHSFLLKSNYNNDLDESILYFLNKFNNLQSLNLNLEELPYNIFLFDIFDEDLSKEEFLSAIEK 82 (303)
T ss_pred CHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHH
T ss_conf 03899999999984997616886789986799999999999729987888754565323041332220016889999999
Q ss_pred ---HHH-HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHCCCCC-EEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCH
Q ss_conf ---546-666665334332100376-10335455543112342-156403543200223456678852122245078897
Q gi|254780567|r 102 ---SIL-IDTRKPVLLEDIDLLDFN-DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 (246)
Q Consensus 102 ---~~~-~~~~~~i~iddi~~~~~~-ee~lf~l~n~~~~~~~~-iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdd 175 (246)
... ...++++++|++|.+... ..+|+-++ .+-... +.+..+..|.. .+|-.+||+. ++.+.++++
T Consensus 83 ~~~~~~~~~~~Kv~IIdea~~lt~~A~NaLLKtL---EEPp~~~~fil~t~~~~~---il~TI~SRCq---~~~f~~~~~ 153 (303)
T PRK07132 83 FSFSSFVSNQKKILIIKNIEKTSNSSLNALLKTI---EEPSKNTYFLLTTKNINK---VIPTIVSRCQ---VINVKEPDQ 153 (303)
T ss_pred HHHCCCCCCCEEEEEEECHHHCCHHHHHHHHHHC---CCCCCCEEEEEEECCHHH---CCHHHHHCCE---EEECCCCCH
T ss_conf 9736655687069998165533999999999870---389868489997288243---8377863665---663788999
Q ss_pred HHHHHHHHH
Q ss_conf 899999999
Q gi|254780567|r 176 DFLEKVIVK 184 (246)
Q Consensus 176 e~~~~il~k 184 (246)
+.....+..
T Consensus 154 ~~i~~~l~e 162 (303)
T PRK07132 154 QKILAKLLS 162 (303)
T ss_pred HHHHHHHHH
T ss_conf 999999986
No 174
>KOG0736 consensus
Probab=97.50 E-value=0.0045 Score=38.78 Aligned_cols=140 Identities=18% Similarity=0.279 Sum_probs=78.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH------------HH----HHHHHHHHHHHHCCC------CC
Q ss_conf 849998787778688999999862762013567644454------------66----666653343321003------76
Q gi|254780567|r 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI------------LI----DTRKPVLLEDIDLLD------FN 122 (246)
Q Consensus 65 ~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~~------------~~----~~~~~i~iddi~~~~------~~ 122 (246)
..+.+|||||+|||-|+.|.|.+++-.+++-.-.++.+. +. .+...+.+|.++-+. |+
T Consensus 706 SGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGD 785 (953)
T KOG0736 706 SGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGD 785 (953)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCEEEEEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCC
T ss_conf 50588779998557999998754303678505889988774301888999999854469749983121232756788788
Q ss_pred C--------HHHHHHHHHHHC-CCCCE-EEEECCCCCCHHHHHHHHH--HHHHHCCEEEECCCCHHH-HHHHHHHHHHHC
Q ss_conf 1--------033545554311-23421-5640354320022345667--885212224507889789-999999986662
Q gi|254780567|r 123 D--------TQLFHIINSIHQ-YDSSL-LMTARTFPVSWGVCLPDLC--SRLKAATVVKISLPDDDF-LEKVIVKMFADR 189 (246)
Q Consensus 123 e--------e~lf~l~n~~~~-~~~~i-ilts~~~p~~~~~~l~DL~--SRl~~g~~~~I~~pdde~-~~~il~k~~~~r 189 (246)
- -.|+--++.+.. ..+.+ |+.++..|.-++ |-|- -||-- .+.+.+++|++ +..+|+- -.|
T Consensus 786 SGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLD---pALLRPGRFDK--LvyvG~~~d~esk~~vL~A--lTr 858 (953)
T KOG0736 786 SGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLD---PALLRPGRFDK--LVYVGPNEDAESKLRVLEA--LTR 858 (953)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCC---HHHCCCCCCCE--EEEECCCCCHHHHHHHHHH--HHH
T ss_conf 6540899999999986266678888659982588855457---65538876552--4885588567889999999--887
Q ss_pred CCCCCHHH-HHHHHHCCCCCHHH
Q ss_conf 89798899-99999406679899
Q gi|254780567|r 190 QIFIDKKL-AAYIVQRMERSLVF 211 (246)
Q Consensus 190 ~i~l~~~v-~~yl~~r~~Rs~~~ 211 (246)
.+.++++| +.-|+++.+-.+..
T Consensus 859 kFkLdedVdL~eiAk~cp~~~TG 881 (953)
T KOG0736 859 KFKLDEDVDLVEIAKKCPPNMTG 881 (953)
T ss_pred HCCCCCCCCHHHHHHHCCCCCCH
T ss_conf 70287876799999638967752
No 175
>pfam00493 MCM MCM2/3/5 family.
Probab=97.50 E-value=0.00058 Score=44.27 Aligned_cols=176 Identities=19% Similarity=0.210 Sum_probs=87.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH-CCCCHHHHHHH---H---------HHH--------HHHHHHHHHHHHHHCCCCCC-
Q ss_conf 49998787778688999999862-76201356764---4---------454--------66666653343321003761-
Q gi|254780567|r 66 VVILVGPSGSGKSCLANIWSDKS-RSTRFSNIAKS---L---------DSI--------LIDTRKPVLLEDIDLLDFND- 123 (246)
Q Consensus 66 ~l~i~G~~GsGKTHLl~a~~~~~-~~~~~~~~~~~---~---------~~~--------~~~~~~~i~iddi~~~~~~e- 123 (246)
.+.|.|.||+|||.|++..++-. +++|.+..... + ... .......+|+|.++......
T Consensus 59 hiLLvGdPG~gKSqlLk~~~~~~pr~~~tsg~~ss~~GLTa~~~~d~~~~~~~leaGalvlAd~Gv~cIDEfdk~~~~d~ 138 (327)
T pfam00493 59 NVLLVGDPGTAKSQLLKYVAKLAPRAVYTSGKGSSAAGLTAAVVRDPDTGEWTLEAGALVLADGGVCCIDEFDKMNEEDR 138 (327)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEEECCCCCEEEECCCEEECCCCEEEEECCCCCCHHHH
T ss_conf 18984699815609999999868870883177665677615899806888369836847755898278500555887679
Q ss_pred HHHHHHHHHH-----------HCCCCCEEEEECCCCCCHH----------H-HHHHHHHHHHHCCEEEECCCCHHHHHH-
Q ss_conf 0335455543-----------1123421564035432002----------2-345667885212224507889789999-
Q gi|254780567|r 124 TQLFHIINSI-----------HQYDSSLLMTARTFPVSWG----------V-CLPDLCSRLKAATVVKISLPDDDFLEK- 180 (246)
Q Consensus 124 e~lf~l~n~~-----------~~~~~~iilts~~~p~~~~----------~-~l~DL~SRl~~g~~~~I~~pdde~~~~- 180 (246)
..|....... ....+..|+++. .|..-. . ..+-|.|||--..+ -...|+.+.-..
T Consensus 139 saL~EAMEqqtVsIaKaGi~~tL~ar~sVlAaa-NP~~g~yd~~~~~~~ni~Lp~~lLsRFDLif~-l~D~~~~~~D~~i 216 (327)
T pfam00493 139 VAIHEAMEQQTISIAKAGIVATLNARCSVLAAA-NPIFGRYDPKKSVAENINLPPPLLSRFDLIFV-LLDKPDEEKDEEL 216 (327)
T ss_pred HHHHHHHHHCEEEEECCCEEEEECCCCEEEEEE-CCCCCCCCCCCCHHHHCCCCHHHHCCEEEEEE-EECCCCHHHHHHH
T ss_conf 999999986817763385389725871799852-77677378888988855897677450107988-4068986889999
Q ss_pred -------------------------HHHHHHH--HCCC--CCCHHHHHHHHHCCC--------------CCHHHHHHHHH
Q ss_conf -------------------------9999866--6289--798899999994066--------------79899999999
Q gi|254780567|r 181 -------------------------VIVKMFA--DRQI--FIDKKLAAYIVQRME--------------RSLVFAEKLVD 217 (246)
Q Consensus 181 -------------------------il~k~~~--~r~i--~l~~~v~~yl~~r~~--------------Rs~~~l~~~l~ 217 (246)
.++++.. ...+ .+++++.+||...+. -+.|.+++++.
T Consensus 217 a~~i~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~ea~~~i~~~y~~~R~~~~~~~~~~~iT~R~lesLiR 296 (327)
T pfam00493 217 AKHIVDLHRHGEEEEIETEDYVDPELLRKYIAYARENIFPKLSDEAREKLVNYYVELRKESEASGSSIPITVRQLESLIR 296 (327)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
T ss_conf 99999987446886555688799999999999998527887798999999999999986424368874723899999999
Q ss_pred HHHHHHHHHC-CCCCHHHHHHHHHHHH
Q ss_conf 9999999847-7878899999998674
Q gi|254780567|r 218 KMDNLALSRG-MGITRSLAAEVLKETQ 243 (246)
Q Consensus 218 ~Ld~~sl~~k-r~ITi~lvk~vL~~~~ 243 (246)
.-...|.... ..||..-|++++.=++
T Consensus 297 La~A~Arl~lr~~Vt~~Dv~~Ai~L~~ 323 (327)
T pfam00493 297 LSEAHARLRLSEEVTEEDVEEAIRLIL 323 (327)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 999999862879323999999999999
No 176
>KOG0741 consensus
Probab=97.33 E-value=0.0011 Score=42.47 Aligned_cols=187 Identities=16% Similarity=0.164 Sum_probs=93.6
Q ss_pred CCCCCCCCCEEECCCHHH-------HHH-------HHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHH-----
Q ss_conf 776688454165361899-------999-------9985101678849998787778688999999862762013-----
Q gi|254780567|r 34 RCLGISRDDLLVHSAIEQ-------AVR-------LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----- 94 (246)
Q Consensus 34 ~~~~~~~dnFiv~~~N~~-------A~~-------~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~----- 94 (246)
++|.+.|++.=+|-=-++ |++ .++++.-.+-+.+.+|||||+|||-+++-+.+.-+|+-..
T Consensus 212 i~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGP 291 (744)
T KOG0741 212 INPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGP 291 (744)
T ss_pred CCCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCH
T ss_conf 18998714326665117899999998776329988998719511235788779998701899998787457998634757
Q ss_pred --------HHHHHHHH---HHHHHH---------HHHHHHHHHCCCCCC--------------HHHHHHHHHHHCCCCCE
Q ss_conf --------56764445---466666---------653343321003761--------------03354555431123421
Q gi|254780567|r 95 --------NIAKSLDS---ILIDTR---------KPVLLEDIDLLDFND--------------TQLFHIINSIHQYDSSL 140 (246)
Q Consensus 95 --------~~~~~~~~---~~~~~~---------~~i~iddi~~~~~~e--------------e~lf~l~n~~~~~~~~i 140 (246)
....+... +.-..+ -+++.|.++.+.... ..|+.-++...+-+--+
T Consensus 292 eIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNIL 371 (744)
T KOG0741 292 EILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNIL 371 (744)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHCEE
T ss_conf 88987606307889999875799998437667725999634679997448878988631899999998532287661678
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHH---CCC---CCCHHHHHHHHHCCCCCHHHHHH
Q ss_conf 564035432002234566788521222450788978999999998666---289---79889999999406679899999
Q gi|254780567|r 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD---RQI---FIDKKLAAYIVQRMERSLVFAEK 214 (246)
Q Consensus 141 ilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~---r~i---~l~~~v~~yl~~r~~Rs~~~l~~ 214 (246)
++--+.. .++ ..+-|.--=+.-..++|..||+.-|..|++-+-+. .++ .++-+-+.-+.++ -|-.++.+
T Consensus 372 VIGMTNR-~Dl--IDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKN--fSGAEleg 446 (744)
T KOG0741 372 VIGMTNR-KDL--IDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKN--FSGAELEG 446 (744)
T ss_pred EEECCCC-HHH--HHHHHCCCCCEEEEEEEECCCCCCCEEEEEHHHHHHHHCCCCCCCCCHHHHHHHHCC--CCHHHHHH
T ss_conf 9940473-666--788755887169999984688767278887144556651787777698999998557--86267899
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999998
Q gi|254780567|r 215 LVDKMDNLALS 225 (246)
Q Consensus 215 ~l~~Ld~~sl~ 225 (246)
++..-...|+.
T Consensus 447 lVksA~S~A~n 457 (744)
T KOG0741 447 LVKSAQSFAMN 457 (744)
T ss_pred HHHHHHHHHHH
T ss_conf 99988889888
No 177
>KOG2227 consensus
Probab=97.31 E-value=0.012 Score=36.07 Aligned_cols=157 Identities=14% Similarity=0.167 Sum_probs=93.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHH----HHHCC---CCHHHHHHHHHHH------------------H---HHH-------
Q ss_conf 78849998787778688999999----86276---2013567644454------------------6---666-------
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWS----DKSRS---TRFSNIAKSLDSI------------------L---IDT------- 107 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~----~~~~~---~~~~~~~~~~~~~------------------~---~~~------- 107 (246)
....+|+.|.+|.|||-++.-.. ....+ +++.+..+..... . ...
T Consensus 174 t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q 253 (529)
T KOG2227 174 TSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQ 253 (529)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf 67645751799865488999998740343166516998512354258899999888988742895047899999998752
Q ss_pred ---HHHHHHHHHHCC-CCCCHHHHHHHHHHHCCCCCEEEEECCCCCCH-HHHHHHHHHHH-HHCCEEEECCCCHHHHHHH
Q ss_conf ---665334332100-37610335455543112342156403543200-22345667885-2122245078897899999
Q gi|254780567|r 108 ---RKPVLLEDIDLL-DFNDTQLFHIINSIHQYDSSLLMTARTFPVSW-GVCLPDLCSRL-KAATVVKISLPDDDFLEKV 181 (246)
Q Consensus 108 ---~~~i~iddi~~~-~~~ee~lf~l~n~~~~~~~~iilts~~~p~~~-~~~l~DL~SRl-~~g~~~~I~~pdde~~~~i 181 (246)
.-++++|.++.+ ...+..|+-+|..-..-+.++++.+-...-++ +-++++|.+|+ -...++..+|-+.+....|
T Consensus 254 ~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~I 333 (529)
T KOG2227 254 SKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEI 333 (529)
T ss_pred CCCEEEEEECHHHHHHHCCCCEEEEEHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHH
T ss_conf 56338987212567760465314321001367766056664001355777776665402578874665568788999999
Q ss_pred HHHHHHHCC-CCCCHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 999866628-97988999999940667989999999999
Q gi|254780567|r 182 IVKMFADRQ-IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 (246)
Q Consensus 182 l~k~~~~r~-i~l~~~v~~yl~~r~~Rs~~~l~~~l~~L 219 (246)
++......- ..+-+-.++++++.....-++++.+++-.
T Consensus 334 l~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~ 372 (529)
T KOG2227 334 LQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVC 372 (529)
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 999974054433303899999998625761289999999
No 178
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=97.29 E-value=0.0025 Score=40.37 Aligned_cols=83 Identities=17% Similarity=0.157 Sum_probs=51.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 88499987877786889999998627620135676444546666665334332100376103354555431123421564
Q gi|254780567|r 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMT 143 (246)
Q Consensus 64 ~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iddi~~~~~~ee~lf~l~n~~~~~~~~iilt 143 (246)
...+++-|.+|||||.+++.+++..+..++.+.+.........-..-+-+.|.+..+| -+.+-.........+...+++
T Consensus 8 ~~iiVVMGVsGsGKSTig~~LA~~l~~~fiegDdfHp~~Ni~KM~~GiPLtD~DR~pW-L~~l~~~~~~~~~~~~~~Vla 86 (177)
T PRK11545 8 HHIYVLMGVSGSGKSAVASAVAHQLHAAFLDGDFLHPRCNIEKMASGEPLNDDDRKPW-LQALNDAAFAMQRTNKVSLIV 86 (177)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHCCCCCCHHHHHHH-HHHHHHHHHHHHCCCCCEEEE
T ss_conf 7599998479899999999999981998553655589999998628999986888999-999999999997269966998
Q ss_pred ECCC
Q ss_conf 0354
Q gi|254780567|r 144 ARTF 147 (246)
Q Consensus 144 s~~~ 147 (246)
|+.-
T Consensus 87 CSAL 90 (177)
T PRK11545 87 CSAL 90 (177)
T ss_pred ECCC
T ss_conf 7011
No 179
>PRK08233 hypothetical protein; Provisional
Probab=97.28 E-value=0.0014 Score=41.95 Aligned_cols=128 Identities=13% Similarity=0.142 Sum_probs=53.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 49998787778688999999862762013---567644454666666533433210037610335455543112342156
Q gi|254780567|r 66 VVILVGPSGSGKSCLANIWSDKSRSTRFS---NIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLM 142 (246)
Q Consensus 66 ~l~i~G~~GsGKTHLl~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~iddi~~~~~~ee~lf~l~n~~~~~~~~iil 142 (246)
.+-|.|++|||||+|++.+.++....... ..+..........+ ..+..+.-.++.+.+..-+.........-++
T Consensus 5 IIgIaGgSgSGKTtla~~l~~~l~~~~~~~~D~y~~~~~~~~~~~~---~~~~~~~d~~d~~~l~~~l~~l~~~~~~d~i 81 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDNCPEDICKW---IDDGANYSEWVLTPLIKDIQELIAKSNVDYI 81 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHH---HCCCCCCCHHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 9999688867899999999997467758996665554687889987---4067786666699999999998559987289
Q ss_pred EECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHH-HHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 4035432002234566788521222450788978-9999999986662897988999999
Q gi|254780567|r 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD-FLEKVIVKMFADRQIFIDKKLAAYI 201 (246)
Q Consensus 143 ts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde-~~~~il~k~~~~r~i~l~~~v~~yl 201 (246)
.-... +....+.|+..+-. .+=++-|.|. +.+.+.+-..+++|=.+..-+-+|+
T Consensus 82 IvEgi---l~l~~~~lr~l~D~--kIfVdtp~Dirl~RRi~RDi~Er~gr~i~svl~qY~ 136 (182)
T PRK08233 82 IVDYP---FAYLNSEMRQYIDV--TIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYL 136 (182)
T ss_pred EEEEE---HHHCCHHHHHHHCE--EEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 99644---36268989977187--899728689999998888877761887899999999
No 180
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.26 E-value=0.0035 Score=39.46 Aligned_cols=113 Identities=13% Similarity=0.167 Sum_probs=59.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCCHH----------H------HHHHH--------HHHHH--------------
Q ss_conf 8849998787778688999999862762013----------5------67644--------45466--------------
Q gi|254780567|r 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------N------IAKSL--------DSILI-------------- 105 (246)
Q Consensus 64 ~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~----------~------~~~~~--------~~~~~-------------- 105 (246)
...+.+.||.|+||+.++.++++.--..... + ..... ....+
T Consensus 23 ~HA~L~~G~~G~Gk~~la~~~a~~llC~~~~~~~~Cg~C~sC~l~~~g~HPD~~~i~~~~~k~I~vd~IR~l~~~~~~~~ 102 (324)
T PRK06871 23 HHALLFKADSGLGTEQLIRALAQWLMCQAPGDEQPCGQCHSCHLFQAGNHPDFHILEPIDGKDIGVDQVREINEKVSQFA 102 (324)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 43787689999789999999999982899999998888989999973899987998467888788999999999986462
Q ss_pred --HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHCCCC-CEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHH
Q ss_conf --66665334332100376-1033545554311234-2156403543200223456678852122245078897899999
Q gi|254780567|r 106 --DTRKPVLLEDIDLLDFN-DTQLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 (246)
Q Consensus 106 --~~~~~i~iddi~~~~~~-ee~lf~l~n~~~~~~~-~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~i 181 (246)
...+++++++.+.++.. ..+|+-++ .+-.. .+++.....|.. .++-++||+. .+.+.+|+.+....-
T Consensus 103 ~~g~~KV~iI~~ae~m~~~AaNALLKtL---EEPp~~~~fiL~t~~~~~---ll~TI~SRCq---~~~~~~p~~~~~~~w 173 (324)
T PRK06871 103 QQGGNKVVYIQGAERLTEAAANALLKTL---EEPRPNTYFLLQADLSAS---LLATIYSRCQ---TWLIHVPEEQIALDW 173 (324)
T ss_pred CCCCCEEEEECCHHHHHHHHHHHHHHHH---CCCCCCEEEEEEECCCCC---CCCHHHHCCC---CEECCCCCHHHHHHH
T ss_conf 2059669997588885799999999983---389878389998787010---3240862661---200899499999999
Q ss_pred HHHH
Q ss_conf 9998
Q gi|254780567|r 182 IVKM 185 (246)
Q Consensus 182 l~k~ 185 (246)
|+..
T Consensus 174 L~~~ 177 (324)
T PRK06871 174 LQAQ 177 (324)
T ss_pred HHHH
T ss_conf 9974
No 181
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.24 E-value=0.00087 Score=43.20 Aligned_cols=28 Identities=36% Similarity=0.656 Sum_probs=24.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 8849998787778688999999862762
Q gi|254780567|r 64 SRVVILVGPSGSGKSCLANIWSDKSRST 91 (246)
Q Consensus 64 ~~~l~i~G~~GsGKTHLl~a~~~~~~~~ 91 (246)
.+.++|+||+|+|||.+++.++......
T Consensus 2 ~~~ill~G~~GsGKTtl~~~la~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCCC
T ss_conf 9789999999702999999999872668
No 182
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=97.24 E-value=0.009 Score=36.93 Aligned_cols=194 Identities=16% Similarity=0.168 Sum_probs=95.2
Q ss_pred CCEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHH--HHHH------HHHHHH------
Q ss_conf 54165361899999998510167884999878777868899999986276201356--7644------454666------
Q gi|254780567|r 41 DDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNI--AKSL------DSILID------ 106 (246)
Q Consensus 41 dnFiv~~~N~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~--~~~~------~~~~~~------ 106 (246)
...++|. -..+...+..+. .+.++++.|++|+|||-|++.++...+..+..-. .... ......
T Consensus 23 ~~~~~g~-~~~~~~~l~a~~--~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~ 99 (329)
T COG0714 23 EKVVVGD-EEVIELALLALL--AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPG 99 (329)
T ss_pred CCCCCCC-HHHHHHHHHHHH--CCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHCCHHHHHHHHCCCC
T ss_conf 5655266-999999999998--5997787798987779999999998389818995689988888205688876642577
Q ss_pred ---------HHH---HHHHHHHHCCCCC-CHHHHHHHHHH----------HCCCCCEEEEECCCCCCHHHH---HHHHHH
Q ss_conf ---------666---5334332100376-10335455543----------112342156403543200223---456678
Q gi|254780567|r 107 ---------TRK---PVLLEDIDLLDFN-DTQLFHIINSI----------HQYDSSLLMTARTFPVSWGVC---LPDLCS 160 (246)
Q Consensus 107 ---------~~~---~i~iddi~~~~~~-ee~lf~l~n~~----------~~~~~~iilts~~~p~~~~~~---l~DL~S 160 (246)
... .+.+|.+....-. +-.|+..++.. .-....+++++ ..|.+.... .+.+.-
T Consensus 100 ~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~e~~vt~~~~~~~~~~~~f~viaT-~Np~e~~g~~~l~eA~ld 178 (329)
T COG0714 100 EFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIAT-QNPGEYEGTYPLPEALLD 178 (329)
T ss_pred EEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCEEEECCCCCCCCCCCCEEEEE-CCCCCCCCCCCCCHHHHC
T ss_conf 1898468733451338998703458988999999999726897079665337998789982-686765788789988881
Q ss_pred HHHHCCEEEECCCCHH-HHHHHHHHHHH-------------------------HCCCCCCHHHHHHHHHCCC------C-
Q ss_conf 8521222450788978-99999999866-------------------------6289798899999994066------7-
Q gi|254780567|r 161 RLKAATVVKISLPDDD-FLEKVIVKMFA-------------------------DRQIFIDKKLAAYIVQRME------R- 207 (246)
Q Consensus 161 Rl~~g~~~~I~~pdde-~~~~il~k~~~-------------------------~r~i~l~~~v~~yl~~r~~------R- 207 (246)
||. +...+..|+.+ ....++.+... ..+..+++++.+|+..-.. .
T Consensus 179 Rf~--~~~~v~yp~~~~e~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 256 (329)
T COG0714 179 RFL--LRIYVDYPDSEEEERIILARVGGVDELDLESLVKPVLSDEELLRLQKEVKKVPVSDEVIDYIVTLVAALREAPDV 256 (329)
T ss_pred CCE--EEEECCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCH
T ss_conf 038--877648997388999998736564432023446654287999987665248876199999999999830013212
Q ss_pred ----CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf ----989999999999999998477878899999998
Q gi|254780567|r 208 ----SLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 (246)
Q Consensus 208 ----s~~~l~~~l~~Ld~~sl~~kr~ITi~lvk~vL~ 240 (246)
+.+.....+..+...+...++...++...+.+.
T Consensus 257 ~~~~s~r~~~~~~~~~~~~a~~~~~~~~~~~dv~~~~ 293 (329)
T COG0714 257 ALGASPRASLALLAALRALALLDGRDAVIPDDVKALA 293 (329)
T ss_pred HCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf 1256866789998886634332464104688999862
No 183
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.20 E-value=0.0051 Score=38.47 Aligned_cols=112 Identities=23% Similarity=0.296 Sum_probs=59.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCH----------HHH--H-HHHH------------HHH---------------
Q ss_conf 84999878777868899999986276201----------356--7-6444------------546---------------
Q gi|254780567|r 65 RVVILVGPSGSGKSCLANIWSDKSRSTRF----------SNI--A-KSLD------------SIL--------------- 104 (246)
Q Consensus 65 ~~l~i~G~~GsGKTHLl~a~~~~~~~~~~----------~~~--~-~~~~------------~~~--------------- 104 (246)
..+.++||.|+||+-++.+++..--.... .+. . .... ...
T Consensus 23 HA~Lf~G~~G~GK~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~~~HPD~~~i~pe~~~~~I~IdqIR~l~~~~~~~~ 102 (328)
T PRK05707 23 HAYLLHGPAGIGKRALAERLAAFLLCEAPQGGGACGSCKGCQLLAAGSHPDNFVLEPEEADKPIKVDQVRELVSFVVQTA 102 (328)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 04644799986799999999999848999998999888899998758999879984266677697999999999983176
Q ss_pred -HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHCCCC-CEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHH
Q ss_conf -666665334332100376-1033545554311234-2156403543200223456678852122245078897899999
Q gi|254780567|r 105 -IDTRKPVLLEDIDLLDFN-DTQLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 (246)
Q Consensus 105 -~~~~~~i~iddi~~~~~~-ee~lf~l~n~~~~~~~-~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~i 181 (246)
...+++++|++.+.++.. ..+|+-++ .+-.. .+++..+..|.. .+|-++||+. .+.+.+|+.+.....
T Consensus 103 ~~g~~KV~iI~~Ae~m~~~AaNALLKtL---EEPp~~t~fiL~t~~~~~---lLpTI~SRCq---~~~~~~p~~e~~~~~ 173 (328)
T PRK05707 103 QLGGRKVVLIEPAEAMNRNAANALLKSL---EEPSGQTVLLLISHQPSR---LLPTIKSRCQ---QLACPLPSNEPSLQW 173 (328)
T ss_pred CCCCCEEEEEEHHHHHCHHHHHHHHHHH---HCCCCCEEEEEEECCHHH---CHHHHHHCCE---EEECCCCCHHHHHHH
T ss_conf 6789579995028773899999999985---078987599986099344---8258874141---334899899999999
Q ss_pred HHHH
Q ss_conf 9998
Q gi|254780567|r 182 IVKM 185 (246)
Q Consensus 182 l~k~ 185 (246)
|...
T Consensus 174 L~~~ 177 (328)
T PRK05707 174 LQQA 177 (328)
T ss_pred HHHH
T ss_conf 9975
No 184
>TIGR00602 rad24 checkpoint protein rad24; InterPro: IPR004582 To be effective as a mechanism that preserves genomic integrity, the DNA damage checkpoint must be extremely sensitive in its ability to detect DNA damage. In Saccharomyces cerevisiae the Ddc1/Rad17/Mec3 complex and Rad24 are DNA damage checkpoint components which may promote checkpoint activation by "sensing" DNA damage directly . Rad24 shares sequence homology with RF-c, a protein that recognises DNA template/RNA primer hybrids during DNA replication. The Ddc1 complex has structural homology to proliferating-cell nuclear antigen (PCNA), which clamps onto DNA and confers processivity to DNA polymerases delta and epsilon. Rad24 is postulated to recognise DNA lesions and then recruit the Ddc1 complex to generate checkpoint signals. ; GO: 0006281 DNA repair, 0007049 cell cycle, 0005634 nucleus.
Probab=97.17 E-value=0.00061 Score=44.12 Aligned_cols=177 Identities=13% Similarity=0.118 Sum_probs=92.2
Q ss_pred CCCCCEEECCCHHHHH-----HHHHHHHC------CCC---CEEEEECCCCCCHHHHHHHHHHHHCCCCHH---------
Q ss_conf 8845416536189999-----99985101------678---849998787778688999999862762013---------
Q gi|254780567|r 38 ISRDDLLVHSAIEQAV-----RLIDSWPS------WPS---RVVILVGPSGSGKSCLANIWSDKSRSTRFS--------- 94 (246)
Q Consensus 38 ~~~dnFiv~~~N~~A~-----~~i~~~~~------~~~---~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~--------- 94 (246)
.=+|-|.-....++|+ ..++.|.+ .+. ..|.|+||+|||||.-+++++++.+-.+..
T Consensus 78 ~W~eKykP~~~~~lAvHK~Ki~~v~~wl~a~~Le~~~~rGGs~LLi~GPsGCgKsT~~k~LsKelg~~~~ew~Np~~~~~ 157 (670)
T TIGR00602 78 LWVEKYKPETQEELAVHKKKIEEVEEWLKAQVLESAKKRGGSILLITGPSGCGKSTTIKILSKELGIKVQEWLNPVLLKE 157 (670)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 44102675424577664777999999975200204566775378841755884478999998886445655407878888
Q ss_pred --------------------HHHHHHHH-----------------HHHHHHHHHHHHHHHCC---CCCCH-HHHHHHHH-
Q ss_conf --------------------56764445-----------------46666665334332100---37610-33545554-
Q gi|254780567|r 95 --------------------NIAKSLDS-----------------ILIDTRKPVLLEDIDLL---DFNDT-QLFHIINS- 132 (246)
Q Consensus 95 --------------------~~~~~~~~-----------------~~~~~~~~i~iddi~~~---~~~ee-~lf~l~n~- 132 (246)
........ +......+|.+||+..+ +.+.. ..||.+-.
T Consensus 158 ~~n~~k~~~~~~~~f~~~PY~sq~e~f~efll~a~kY~~lQ~lG~~~~~~kk~Il~e~lPhln~F~~d~~rr~~~~vlr~ 237 (670)
T TIGR00602 158 QKNDEKDTLSLESKFSRFPYLSQIEVFSEFLLRATKYNKLQKLGDDLQTDKKLILVEDLPHLNKFYRDLDRRALREVLRT 237 (670)
T ss_pred CCCHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHCCCHHHHHHHHHHHH
T ss_conf 85124444212540221676314554678764212346664214110247545772137640221366126899999999
Q ss_pred HHCC-C-CC-EEEE-ECCCCCCH---HHH---------------HHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCC
Q ss_conf 3112-3-42-1564-03543200---223---------------456678852122245078897899999999866628
Q gi|254780567|r 133 IHQY-D-SS-LLMT-ARTFPVSW---GVC---------------LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 (246)
Q Consensus 133 ~~~~-~-~~-iilt-s~~~p~~~---~~~---------------l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~ 190 (246)
.+.. | .+ +|+. ++.....+ +.. ..++.- =-....+...|..-..+++.|...+...+
T Consensus 238 ~~~~~g~~pPlv~~~te~~~~nlegdNnq~kfGir~~F~~~~IM~~~il~-~pr~~~i~FNPiapT~mkK~L~~I~~~e~ 316 (670)
T TIGR00602 238 KYVSEGRLPPLVIIITESELNNLEGDNNQDKFGIRLLFPAVTIMNKEILE-EPRVSNIKFNPIAPTLMKKFLNRIVTKEA 316 (670)
T ss_pred HHHCCCCCCCEEEEEECCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHC-CCCCCCEECCCCCHHHHHHHHHHHHHHCC
T ss_conf 86237898835899712434445775551010410135257775266540-77613100178717899998555621314
Q ss_pred CC------C--CHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 97------9--88999999940667989999999999
Q gi|254780567|r 191 IF------I--DKKLAAYIVQRMERSLVFAEKLVDKM 219 (246)
Q Consensus 191 i~------l--~~~v~~yl~~r~~Rs~~~l~~~l~~L 219 (246)
-. . -..|.+|+. .+-++|++|++.|
T Consensus 317 ~~~~~K~~~~~~~~ve~~c~----~~~GDiRSAInsL 349 (670)
T TIGR00602 317 KKKGEKILVPKKTSVEDLCQ----GESGDIRSAINSL 349 (670)
T ss_pred CCCCCCCCCCCHHHHHHHHH----CCCCCHHHHHHHH
T ss_conf 34678544663468999971----0688478888888
No 185
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.17 E-value=0.00076 Score=43.53 Aligned_cols=83 Identities=18% Similarity=0.155 Sum_probs=49.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 88499987877786889999998627620135676444546666665334332100376103354555431123421564
Q gi|254780567|r 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMT 143 (246)
Q Consensus 64 ~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iddi~~~~~~ee~lf~l~n~~~~~~~~iilt 143 (246)
++.+++.|.+|||||.+.++++.+.+..++.............-..-+-+.|-+...| -+.|-.........+...+++
T Consensus 3 ~~a~VVmGVsGsGKSTvg~~LA~~L~~~fiegDd~Hp~~Ni~KM~~GiPL~D~DR~pW-L~~l~~~~~~~~~~~~~~Vva 81 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPAKNIDKMSQGIPLTDEDRLPW-LERLNDASYSLYKKNETGFIV 81 (176)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHCCCCCCHHHHHHH-HHHHHHHHHHHHHCCCCEEEE
T ss_conf 8579998289899899999999995987762344378989999868999886679999-999999999999649982997
Q ss_pred ECCC
Q ss_conf 0354
Q gi|254780567|r 144 ARTF 147 (246)
Q Consensus 144 s~~~ 147 (246)
|+.-
T Consensus 82 CSAL 85 (176)
T PRK09825 82 CSSL 85 (176)
T ss_pred EHHH
T ss_conf 1886
No 186
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.16 E-value=0.0008 Score=43.40 Aligned_cols=117 Identities=15% Similarity=0.158 Sum_probs=58.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHH---HHHH--HHHHHHHHHHHHH-------HHHHHCCCCCCH-----
Q ss_conf 6788499987877786889999998627620135---6764--4454666666533-------433210037610-----
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN---IAKS--LDSILIDTRKPVL-------LEDIDLLDFNDT----- 124 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~---~~~~--~~~~~~~~~~~i~-------iddi~~~~~~ee----- 124 (246)
..++.++|.||+|+|||.|++.+.+.....+..+ .+-. ........+.++. ++.-.++.+.+-
T Consensus 5 ~~g~livisGPSG~GK~tl~~~L~~~~p~~~~~~vs~TTR~pR~~E~dG~dY~Fvs~eeF~~~i~~g~FlE~~~~~g~~Y 84 (208)
T PRK00300 5 RRGLLIVLSAPSGAGKSTLVRALLERDPNDLQLSVSATTRAPRPGEVDGVHYHFVSREEFEEMIENGEFLEWAEVFGNYY 84 (208)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCEEEEECHHHHHHHHHHCCCEEEEEECCCCE
T ss_conf 18838999999988999999999972998689989746889899877896579961999999986283667899838703
Q ss_pred -HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHH
Q ss_conf -335455543112342156403543200223456678852122245078897899999999
Q gi|254780567|r 125 -QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 (246)
Q Consensus 125 -~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k 184 (246)
.....+......|+-+++--+.. .. ..+++...-...+=|.||+.+.+..-|.+
T Consensus 85 GT~~~~I~~~~~~G~~vildidvq-----Ga-~~lk~~~~~~~~IFI~Pps~e~L~~RL~~ 139 (208)
T PRK00300 85 GTPREPVEEALAAGKDVLLEIDWQ-----GA-QQVKKKMPDAVSIFILPPSLEELERRLRG 139 (208)
T ss_pred ECCHHHHHHHHHCCCCEEEECCHH-----HH-HHHHHHCCCCEEEEEECCCHHHHHHHHHH
T ss_conf 524699999985699879746789-----99-99998597757999828899999999986
No 187
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=97.15 E-value=0.001 Score=42.77 Aligned_cols=97 Identities=22% Similarity=0.169 Sum_probs=56.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHH--------------------HHHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 499987877786889999998627620135676--------------------444546666665334332100376103
Q gi|254780567|r 66 VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAK--------------------SLDSILIDTRKPVLLEDIDLLDFNDTQ 125 (246)
Q Consensus 66 ~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~i~iddi~~~~~~ee~ 125 (246)
.+.+.||+|+|||.|++++.+.+....+..... -...........+++--+++-.|-|-+
T Consensus 41 vVavvGPpgvGKtTLiksLvk~ytk~~l~~i~GPiTvvs~K~rRiTfiEc~nDi~smiD~AKvADlVLl~iD~s~GfEmE 120 (225)
T cd01882 41 VVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPITVVTGKKRRLTFIECPNDINAMIDIAKVADLVLLLIDASFGFEME 120 (225)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCEEEEEEECCCHHHHHHHHHHHHHEEEEEECCCCCEEEE
T ss_conf 99998989977889999999998544375578887999468426899974860999987887643368886166553520
Q ss_pred HHHHHHHHHCCCCCEEEEEC------CCCCCHHHHHHHHHHHH
Q ss_conf 35455543112342156403------54320022345667885
Q gi|254780567|r 126 LFHIINSIHQYDSSLLMTAR------TFPVSWGVCLPDLCSRL 162 (246)
Q Consensus 126 lf~l~n~~~~~~~~iilts~------~~p~~~~~~l~DL~SRl 162 (246)
.|.++|.+..+|-+-++.-- ...+.+.-.-+.|..||
T Consensus 121 tfEfLnilq~hG~PkV~GVltHlD~fk~~k~lrk~KK~lk~RF 163 (225)
T cd01882 121 TFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRF 163 (225)
T ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf 8999999997599943788544310155788999999999999
No 188
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=97.13 E-value=0.016 Score=35.35 Aligned_cols=111 Identities=16% Similarity=0.229 Sum_probs=58.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHCCCCCE
Q ss_conf 8499987877786889999998627620135676444546666665334332100376----103354555431123421
Q gi|254780567|r 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN----DTQLFHIINSIHQYDSSL 140 (246)
Q Consensus 65 ~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iddi~~~~~~----ee~lf~l~n~~~~~~~~i 140 (246)
+.++|.|..|||||.|++.+.+....+. +- ..+...+--.+-.+..-.-. |..|+..+..+.. +.+
T Consensus 138 ~~~vl~G~TG~GKT~lL~~L~~~G~~vi-DL-------EglA~HRGS~FG~~~~~QPsQk~FE~~L~~~l~~~~~--~~i 207 (333)
T PRK11784 138 PLVVLGGMTGSGKTRLLQALANAGAQVL-DL-------EGLANHRGSSFGRLGGPQPSQKDFENLLAEALLKLDP--API 207 (333)
T ss_pred CCEEEECCCCCCHHHHHHHHHHCCCCEE-CH-------HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC--CCE
T ss_conf 8599867888778999999997599743-38-------9886325642358899998789999999999980899--856
Q ss_pred EEEE-CCCCCCHHHHHH-HHHHHHHHCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 5640-354320022345-6678852122245078897899999999866
Q gi|254780567|r 141 LMTA-RTFPVSWGVCLP-DLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 (246)
Q Consensus 141 ilts-~~~p~~~~~~l~-DL~SRl~~g~~~~I~~pdde~~~~il~k~~~ 187 (246)
++=+ +.... ...+| .|-.+++.+.++.|+.|-++-...++.-+..
T Consensus 208 ~vE~ESr~IG--~~~iP~~l~~~M~~a~~i~i~~~~e~Rv~~l~~eY~~ 254 (333)
T PRK11784 208 VVEDESRRIG--RVHLPEALYEAMQAAPIVEVEAPLEERVERLLEDYVH 254 (333)
T ss_pred EEEECCCCCC--CCCCCHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHH
T ss_conf 9960100306--7138999999996298899989999999999998528
No 189
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=97.13 E-value=0.015 Score=35.51 Aligned_cols=185 Identities=16% Similarity=0.229 Sum_probs=107.5
Q ss_pred CCCCCCCCCEEECCCHHH--HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC-----HHHHHH--HHHHHH
Q ss_conf 776688454165361899--99999851016788499987877786889999998627620-----135676--444546
Q gi|254780567|r 34 RCLGISRDDLLVHSAIEQ--AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTR-----FSNIAK--SLDSIL 104 (246)
Q Consensus 34 ~~~~~~~dnFiv~~~N~~--A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~-----~~~~~~--~~~~~~ 104 (246)
+...|+|++.+ |.|-.+ +...++.... ...++.|.|++|+||.-+++++-+.+.... +.+.+. .+....
T Consensus 238 ~~a~y~f~~Ii-g~S~~m~~~~~~akr~A~-tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESE 315 (560)
T COG3829 238 LKAKYTFDDII-GESPAMLRVLELAKRIAK-TDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESE 315 (560)
T ss_pred CCCCCCHHHHC-CCCHHHHHHHHHHHHHCC-CCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHH
T ss_conf 44536610020-589999999999986338-9982899537886689999998744843479807876433888888888
Q ss_pred ----------------------HHHHHHHHHHHHHCCCCC-CHHHHHHHHHH----------HCCCCCEEEEECCCCCCH
Q ss_conf ----------------------666665334332100376-10335455543----------112342156403543200
Q gi|254780567|r 105 ----------------------IDTRKPVLLEDIDLLDFN-DTQLFHIINSI----------HQYDSSLLMTARTFPVSW 151 (246)
Q Consensus 105 ----------------------~~~~~~i~iddi~~~~~~-ee~lf~l~n~~----------~~~~~~iilts~~~p~~~ 151 (246)
...-..+.+|.+.-++-. |-.|+-.+..- ....-+++-+.+.++.++
T Consensus 316 LFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~nL~~~ 395 (560)
T COG3829 316 LFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNRNLEKM 395 (560)
T ss_pred HHCCCCCCCCCCCCCCCCCCEEECCCCEEEEHHHCCCCHHHHHHHHHHHHHCEEEECCCCCCEEEEEEEEECCCCCHHHH
T ss_conf 72767764246445799760544169837712320399899999999875353785378875356789994257589999
Q ss_pred ---HHHHHHHHHHHHHCCEEEECC----CCH-HHH-HHHHHHHHHHCC--CC-CCHHHHHHHHH-CCCCCHHHHHHHHHH
Q ss_conf ---223456678852122245078----897-899-999999866628--97-98899999994-066798999999999
Q gi|254780567|r 152 ---GVCLPDLCSRLKAATVVKISL----PDD-DFL-EKVIVKMFADRQ--IF-IDKKLAAYIVQ-RMERSLVFAEKLVDK 218 (246)
Q Consensus 152 ---~~~l~DL~SRl~~g~~~~I~~----pdd-e~~-~~il~k~~~~r~--i~-l~~~v~~yl~~-r~~Rs~~~l~~~l~~ 218 (246)
.-+.+||-=||.-+. +.|+| |+| ..+ ...|.++..+.+ +. ++++++..+++ ++|.+++.+++++++
T Consensus 396 i~~G~FReDLYYRLNV~~-i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y~WPGNVRELeNviER 474 (560)
T COG3829 396 IAEGTFREDLYYRLNVIP-ITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLRYDWPGNVRELENVIER 474 (560)
T ss_pred HHCCCCHHHHEEEECEEE-ECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 863961655300304011-1477723382018999999999999872887666899999999868999609999999999
Q ss_pred HHH
Q ss_conf 999
Q gi|254780567|r 219 MDN 221 (246)
Q Consensus 219 Ld~ 221 (246)
+-.
T Consensus 475 ~v~ 477 (560)
T COG3829 475 AVN 477 (560)
T ss_pred HHH
T ss_conf 981
No 190
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.12 E-value=0.0028 Score=40.01 Aligned_cols=104 Identities=12% Similarity=0.123 Sum_probs=54.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC------CCHHHHHHHHHHHCCC
Q ss_conf 8849998787778688999999862762013567644454666666533433210037------6103354555431123
Q gi|254780567|r 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF------NDTQLFHIINSIHQYD 137 (246)
Q Consensus 64 ~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iddi~~~~~------~ee~lf~l~n~~~~~~ 137 (246)
.++++|.|..|||||++.+.+++..+..+++....-... .-.-+-++....| -|...+.. +. ..
T Consensus 2 ~~~I~LiG~mGsGKstiGk~LA~~L~~~fiD~D~~Ie~~------~g~sI~eif~~~Ge~~FR~~E~~~l~~---l~-~~ 71 (172)
T PRK03731 2 TQPLFLVGPRGCGKTTVGMALAQALGYRFVDTDLWLQST------LQMTVAEIVEREGWAGFRARESAALEA---VT-AP 71 (172)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHH------HCCCHHHHHHHHCHHHHHHHHHHHHHH---HC-CC
T ss_conf 998899889999889999999998599979786999988------398999999983989999999999998---42-78
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHH
Q ss_conf 42156403543200223456678852122245078897899999
Q gi|254780567|r 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 (246)
Q Consensus 138 ~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~i 181 (246)
..++-|+...+-.-. ...-|+ +.|.++-|..|-+.....+
T Consensus 72 ~~VIstGGG~v~~~~-n~~~L~---~~g~vv~L~~~~~~l~~Rl 111 (172)
T PRK03731 72 STVVATGGGIILTEE-NRAFMR---NNGIVIYLCAPVSVLANRL 111 (172)
T ss_pred CEEEEECCCCCCCHH-HHHHHH---HCCEEEEEECCHHHHHHHH
T ss_conf 828980786426899-999999---6899999979999999998
No 191
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB; InterPro: IPR014149 This entry represents TrbB, a protein, which is encoded in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer . TrbB is a homologue of the vir system VirB11 ATPase , and the Flp pilus system ATPase TadA ..
Probab=97.12 E-value=0.00052 Score=44.58 Aligned_cols=95 Identities=20% Similarity=0.215 Sum_probs=57.3
Q ss_pred CCCCCCCCEEECCCH-HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 766884541653618-99999998510167884999878777868899999986276-2013567644454666666533
Q gi|254780567|r 35 CLGISRDDLLVHSAI-EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS-TRFSNIAKSLDSILIDTRKPVL 112 (246)
Q Consensus 35 ~~~~~~dnFiv~~~N-~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~ 112 (246)
..-||+|+|+...-= .-.++.|...... -+.+++.|+.|||||.|+||+-.+.-. .. ..-++++
T Consensus 110 ~~vfTLDdYV~~gimtaaQ~d~l~~Av~a-r~NIlv~GGTGSGKTTLaNAlla~I~~l~~-------------P~dR~vI 175 (315)
T TIGR02782 110 VRVFTLDDYVEAGIMTAAQRDVLREAVAA-RKNILVVGGTGSGKTTLANALLAEIAKLND-------------PDDRVVI 175 (315)
T ss_pred CCCCCCHHHHHHCCCCHHHHHHHHHHHHH-CCCEEEECCCCCCHHHHHHHHHHHHHHCCC-------------CCCEEEE
T ss_conf 41047077764044557899999999971-298899814588579999999998852169-------------9961899
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHH
Q ss_conf 4332100376103354555431123421564035432002234
Q gi|254780567|r 113 LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 (246)
Q Consensus 113 iddi~~~~~~ee~lf~l~n~~~~~~~~iilts~~~p~~~~~~l 155 (246)
+||=.-+ .|...|.-.+-|++..-.+|...+
T Consensus 176 iEDT~El------------QC~A~N~V~lrT~d~~Gi~M~~LL 206 (315)
T TIGR02782 176 IEDTAEL------------QCAAENLVALRTSDDVGISMTRLL 206 (315)
T ss_pred EECCHHH------------HHCCCCEEEEECCCCCCCCHHHHH
T ss_conf 8547132------------013787068744898661478888
No 192
>KOG0990 consensus
Probab=97.09 E-value=0.0027 Score=40.18 Aligned_cols=187 Identities=11% Similarity=0.072 Sum_probs=98.0
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHCCC-CCEEEEECCCCCCHHHHHHHHHHHHCC-CCHHHHHHHHHH-
Q ss_conf 34155888776688454165361899999998510167-884999878777868899999986276-201356764445-
Q gi|254780567|r 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP-SRVVILVGPSGSGKSCLANIWSDKSRS-TRFSNIAKSLDS- 102 (246)
Q Consensus 26 ~Ql~l~~~~~~~~~~dnFiv~~~N~~A~~~i~~~~~~~-~~~l~i~G~~GsGKTHLl~a~~~~~~~-~~~~~~~~~~~~- 102 (246)
.|...++.-.....+.+=++ .++..+.-+....+.+ .+.+++|||||.|||.-.-+.+.+.-. .........+..
T Consensus 25 ~~~~~pwvekyrP~~l~dv~--~~~ei~st~~~~~~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaS 102 (360)
T KOG0990 25 PQYPQPWVEKYRPPFLGIVI--KQEPIWSTENRYSGMPGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNAS 102 (360)
T ss_pred CCCCCCCCCCCCCCHHHHHH--CCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHCC
T ss_conf 45688876688982256673--3772124788862688897534348998899873666566505899824699986436
Q ss_pred ----------------------HHH--HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf ----------------------466--66665334332100376-10335455543112342156403543200223456
Q gi|254780567|r 103 ----------------------ILI--DTRKPVLLEDIDLLDFN-DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 (246)
Q Consensus 103 ----------------------~~~--~~~~~i~iddi~~~~~~-ee~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~D 157 (246)
.+. ..++.+++|.-+....+ |.+|=- .-.-+..+.+..+.+.. |. ...+-
T Consensus 103 d~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRR-viek~t~n~rF~ii~n~-~~---ki~pa 177 (360)
T KOG0990 103 DDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRR-VIEKYTANTRFATISNP-PQ---KIHPA 177 (360)
T ss_pred CCCCCCCHHHHHHHHHHHCCCEECCCCCCEEEEEECCHHHHHHHHHHHHHH-HHHHHCCCEEEEEECCC-HH---HCCCH
T ss_conf 766886147888987764164000246761588733413766989999999-99871332379986167-64---46814
Q ss_pred HHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 67885212224507889789999999986662897988999999940667989999999999999998
Q gi|254780567|r 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 (246)
Q Consensus 158 L~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~ 225 (246)
+.||+... ...|.+.+.....+.+.+...+...+++...-++..+..+++.+ ++-|+..+..
T Consensus 178 ~qsRctrf---rf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s~gDmr~a---~n~Lqs~~~~ 239 (360)
T KOG0990 178 QQSRCTRF---RFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRLSVGDMRVA---LNYLQSILKK 239 (360)
T ss_pred HHCCCCCC---CCCCCCHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_conf 64104457---87888754424678888715311038788999999867779999---9999999998
No 193
>smart00350 MCM minichromosome maintenance proteins.
Probab=97.09 E-value=0.011 Score=36.38 Aligned_cols=176 Identities=16% Similarity=0.197 Sum_probs=84.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH-CCCCHHHHHHHH------------H--------HHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 49998787778688999999862-762013567644------------4--------54666666533433210037610
Q gi|254780567|r 66 VVILVGPSGSGKSCLANIWSDKS-RSTRFSNIAKSL------------D--------SILIDTRKPVLLEDIDLLDFNDT 124 (246)
Q Consensus 66 ~l~i~G~~GsGKTHLl~a~~~~~-~~~~~~~~~~~~------------~--------~~~~~~~~~i~iddi~~~~~~ee 124 (246)
.+.|.|.||+|||.||+..++-. +++|.+...... . ...+......|||.++.++..+.
T Consensus 238 hiLLvGDPGtgKSqlLk~~~~iaprsvytsG~gsS~aGLTaav~rd~~~ge~~leaGALVlAD~GiccIDEfdKm~~~dr 317 (509)
T smart00350 238 NILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEGGALVLADNGVCCIDEFDKMDDSDR 317 (509)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCEEEEEECCCCCCEEECCCCEECCCCCEEEEEEHHHCCHHHH
T ss_conf 49984699823629999999858860687344455577068999817888378725641205675478521320787789
Q ss_pred HHHH-H------------HHHHHCCCCCEEEEECCCC-CCH--------HH-HHHHHHHHHHHCCEEEECCCCHHHHHHH
Q ss_conf 3354-5------------5543112342156403543-200--------22-3456678852122245078897899999
Q gi|254780567|r 125 QLFH-I------------INSIHQYDSSLLMTARTFP-VSW--------GV-CLPDLCSRLKAATVVKISLPDDDFLEKV 181 (246)
Q Consensus 125 ~lf~-l------------~n~~~~~~~~iilts~~~p-~~~--------~~-~l~DL~SRl~~g~~~~I~~pdde~~~~i 181 (246)
..+| . +.......+.+ +++..|. ..+ +. ..+-|.|||=-..++. ..||.+.-..+
T Consensus 318 ~alhEaMEQQtisiaKaGi~~tL~aR~sV-lAAaNP~~g~yd~~~s~~eni~l~~~LLSRFDLIf~l~-D~~~~~~D~~i 395 (509)
T smart00350 318 TAIHEAMEQQTISIAKAGITTTLNARCSV-LAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVL-DEVDEERDREL 395 (509)
T ss_pred HHHHHHHHHCEEEEECCCEEEEEECCCEE-EEEECCCCCCCCCCCCHHHHCCCCHHHHHHCCEEEEEE-CCCCHHHHHHH
T ss_conf 99999997487787437517998557359-98655655637888999994689803541023899961-58987889999
Q ss_pred ----H-----------------------HHHHH-HC---CCCCCHHHHHHHHHCCC----------------CCHHHHHH
Q ss_conf ----9-----------------------99866-62---89798899999994066----------------79899999
Q gi|254780567|r 182 ----I-----------------------VKMFA-DR---QIFIDKKLAAYIVQRME----------------RSLVFAEK 214 (246)
Q Consensus 182 ----l-----------------------~k~~~-~r---~i~l~~~v~~yl~~r~~----------------Rs~~~l~~ 214 (246)
+ +++.. .| .=.+++++.+.|...+- -+.|.+++
T Consensus 396 a~hil~~h~~~~~~~~~~~~~~~~~~~lrkYI~yar~~~~P~ls~eA~~~i~~~Y~~~R~~~~~~~~~~~~~iT~RqLEs 475 (509)
T smart00350 396 AKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLES 475 (509)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
T ss_conf 99999987415887545568868999999999999862899789999999999999998564016888861533899999
Q ss_pred HHHHHHHHH-HHHCCCCCHHHHHHHHHHHH
Q ss_conf 999999999-98477878899999998674
Q gi|254780567|r 215 LVDKMDNLA-LSRGMGITRSLAAEVLKETQ 243 (246)
Q Consensus 215 ~l~~Ld~~s-l~~kr~ITi~lvk~vL~~~~ 243 (246)
++..=.+.| +.....||..-|++++.=++
T Consensus 476 lIRLseA~Akl~l~~~Vt~~Dv~~Ai~L~~ 505 (509)
T smart00350 476 IIRLSEAHAKMRLSDVVEEADVEEAIRLLR 505 (509)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 999999999845858555999999999999
No 194
>TIGR02673 FtsE cell division ATP-binding protein FtsE; InterPro: IPR005286 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). FtsE is an ABC transporter ATP-binding protein. This protein and its permease partner FtsX, localize to the cell division site. In a number of species, the ftsEX gene pair is located next to ftsY, which encodes the signal recognition particle-docki ng protein.; GO: 0005524 ATP binding, 0051301 cell division.
Probab=97.08 E-value=0.00045 Score=44.94 Aligned_cols=26 Identities=31% Similarity=0.564 Sum_probs=23.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 67884999878777868899999986
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.++.++||.||||+|||.|++-+|..
T Consensus 26 ~kG~F~FLtG~SGAGKttLLKLl~~~ 51 (215)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGA 51 (215)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 27740788727786178999999852
No 195
>TIGR02173 cyt_kin_arch cytidylate kinase, putative; InterPro: IPR011892 Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by IPR003136 from INTERPRO.; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=97.08 E-value=0.00044 Score=45.00 Aligned_cols=33 Identities=30% Similarity=0.436 Sum_probs=28.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 999878777868899999986276201356764
Q gi|254780567|r 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS 99 (246)
Q Consensus 67 l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~ 99 (246)
+.|-||||||||..+..+|++.+-.++++....
T Consensus 3 I~ISGpPGSGktTvA~~lA~~Lsl~~iSaG~iR 35 (173)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISAGDIR 35 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEECCCHHH
T ss_conf 887358968647899999986398312020078
No 196
>KOG0741 consensus
Probab=97.07 E-value=0.014 Score=35.83 Aligned_cols=125 Identities=18% Similarity=0.149 Sum_probs=67.9
Q ss_pred HHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHH-----------------HHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 85101678849998787778688999999862762013567-----------------6444546666665334332100
Q gi|254780567|r 57 DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIA-----------------KSLDSILIDTRKPVLLEDIDLL 119 (246)
Q Consensus 57 ~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~i~iddi~~~ 119 (246)
++....+-..+.+.||+|||||.|+.-++..+..-++.-.. .-+.+.......++++||+..+
T Consensus 531 k~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErL 610 (744)
T KOG0741 531 KNSERSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERL 610 (744)
T ss_pred HCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHH
T ss_conf 33466763589986699887688999997527998479737787037466788999999888763386508998155656
Q ss_pred CCC-----------CHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCH-HHHHHHHHH
Q ss_conf 376-----------10335455543112342156403543200223456678852122245078897-899999999
Q gi|254780567|r 120 DFN-----------DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD-DFLEKVIVK 184 (246)
Q Consensus 120 ~~~-----------ee~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdd-e~~~~il~k 184 (246)
-.+ -++|.-++...--.|+++++.++.+-.... ..-++.+-|.+ +++++.... +....+|..
T Consensus 611 iD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL-~~m~i~~~F~~--~i~Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741 611 LDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVL-QEMGILDCFSS--TIHVPNLTTGEQLLEVLEE 684 (744)
T ss_pred HCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHH-HHCCHHHHHHH--EEECCCCCCHHHHHHHHHH
T ss_conf 20024684035799999999952489888459999624079999-97277875111--0546756864789999997
No 197
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462 The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=97.06 E-value=0.0009 Score=43.08 Aligned_cols=149 Identities=21% Similarity=0.291 Sum_probs=78.8
Q ss_pred EEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC-CCHHHHHHHHHH-HHHHH-----HHHHHHHH
Q ss_conf 165361899999998510167884999878777868899999986276-201356764445-46666-----66533433
Q gi|254780567|r 43 LLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS-TRFSNIAKSLDS-ILIDT-----RKPVLLED 115 (246)
Q Consensus 43 Fiv~~~N~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~-~~~~~~~~~~~~-~~~~~-----~~~i~idd 115 (246)
||..+.=+..-.=...|.+ .+-|+-+-||.|+|||.|+..+|++-+. +.+-.....+.. +.+.. .+.++...
T Consensus 1 Fi~t~~v~~v~~R~l~yL~-~G~PvHl~GPaG~GKT~LA~hvA~~r~RPV~l~~Gd~eL~~~DLvG~~~g~~~~kv~Dqf 79 (265)
T TIGR02640 1 FIETDAVKRVTSRALRYLK-SGYPVHLRGPAGTGKTTLAMHVARKRDRPVVLINGDAELTTSDLVGSYAGYTRKKVVDQF 79 (265)
T ss_pred CCCCHHHHHHHHHHHHHHC-CCCCEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEECC
T ss_conf 9877237999998766322-788667447888556899999997368968998658232654423154675222232012
Q ss_pred HHCC---------CC----------------------------------CCHHHHHHHHHHHC-------CCCCEEEEEC
Q ss_conf 2100---------37----------------------------------61033545554311-------2342156403
Q gi|254780567|r 116 IDLL---------DF----------------------------------NDTQLFHIINSIHQ-------YDSSLLMTAR 145 (246)
Q Consensus 116 i~~~---------~~----------------------------------~ee~lf~l~n~~~~-------~~~~iilts~ 145 (246)
||.. +| =||.++.|.-.... =.=++||||+
T Consensus 80 ihnV~K~~d~~~~~W~D~rLt~Av~eG~TLVYdEF~RskP~~nNVLLSvlEE~vL~LPg~~~~~~Yv~VhP~FR~IfTSN 159 (265)
T TIGR02640 80 IHNVVKLEDIVRQNWVDNRLTLAVREGFTLVYDEFTRSKPETNNVLLSVLEEGVLELPGKRGESRYVDVHPEFRVIFTSN 159 (265)
T ss_pred EEEEECCCCCCCCCCCCCHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEECCC
T ss_conf 11134251220026678357899756972766475788620456567555523215888787787225788702463148
Q ss_pred CCCCCHHHHH--HH-HHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 5432002234--56-678852122245078897899999999866628979889999999
Q gi|254780567|r 146 TFPVSWGVCL--PD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 (246)
Q Consensus 146 ~~p~~~~~~l--~D-L~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~ 202 (246)
|.+..+.- .| |.-||- .+.++-||.+.-.+|+..+ ..+.++-...|+
T Consensus 160 --p~EYAGVh~~QDALlDRL~---ti~~D~~D~~~e~ai~~~~-----t~~~~~~a~~IV 209 (265)
T TIGR02640 160 --PVEYAGVHETQDALLDRLV---TISMDYPDEDTETAILRAK-----TDVAEESAATIV 209 (265)
T ss_pred --CCCCCCCCCHHHHHHHHHC---CCCCCCCCHHHHHHHHHHH-----HCCCHHHHHHHH
T ss_conf --7010576771667766440---0457854447899999986-----061246789999
No 198
>PRK02496 adk adenylate kinase; Provisional
Probab=97.05 E-value=0.0077 Score=37.37 Aligned_cols=116 Identities=20% Similarity=0.341 Sum_probs=58.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HHHH---HHHHHHCCCCCCHHHHHHHHHHHCC---C
Q ss_conf 8499987877786889999998627620135676444546666-6653---3433210037610335455543112---3
Q gi|254780567|r 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT-RKPV---LLEDIDLLDFNDTQLFHIINSIHQY---D 137 (246)
Q Consensus 65 ~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~i---~iddi~~~~~~ee~lf~l~n~~~~~---~ 137 (246)
+-++|.|||||||+..+..++++++...++.....-....... .... .++.-... ..+.+..++-..... .
T Consensus 2 ~riillG~PGSGKgTqa~~L~~~~~~~his~GdllR~~~~~~s~lg~~i~~~i~~G~lv--pd~iv~~li~~~l~~~~~~ 79 (185)
T PRK02496 2 ARLIFLGPPGAGKGTQAVVLAEHLQIPHISTGDILRQAITEQTPLGIKAQGYVDSGELV--PDQLVLGLVQERLQQPDAA 79 (185)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCEEECHHHHHHHHHHCCCHHHHHHHHHHHCCCCC--CCHHHHHHHHHHHHCCCCC
T ss_conf 18999799999989999999999699778888999999874998899999999879967--7288999999998484533
Q ss_pred CCEEEEECCCCCCHHH--HHHHHHHHHH--HCCEEEECCCCHHHHHHHHHH
Q ss_conf 4215640354320022--3456678852--122245078897899999999
Q gi|254780567|r 138 SSLLMTARTFPVSWGV--CLPDLCSRLK--AATVVKISLPDDDFLEKVIVK 184 (246)
Q Consensus 138 ~~iilts~~~p~~~~~--~l~DL~SRl~--~g~~~~I~~pdde~~~~il~k 184 (246)
+..++ +.-|....- .+..+..... --.++.+.-|++.....++.+
T Consensus 80 ~g~il--DGfPR~~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R 128 (185)
T PRK02496 80 NGWIL--DGFPRNVTQAAFLDELLQEINQSGDRVVNLDVPDDVIVERLLAR 128 (185)
T ss_pred CCEEE--ECCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHCC
T ss_conf 87788--68988578899999999970567303333049999999998746
No 199
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.02 E-value=0.0038 Score=39.28 Aligned_cols=119 Identities=17% Similarity=0.211 Sum_probs=58.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCCHH--HHHHHH--HHHHHHHHHHHHHHHH-------HCCCCCCH------HH
Q ss_conf 8849998787778688999999862762013--567644--4546666665334332-------10037610------33
Q gi|254780567|r 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFS--NIAKSL--DSILIDTRKPVLLEDI-------DLLDFNDT------QL 126 (246)
Q Consensus 64 ~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~--~~~~~~--~~~~~~~~~~i~iddi-------~~~~~~ee------~l 126 (246)
++.++|.||+|+|||.|++.+++......+. ..+-.. ....-..+.++.-+.+ .++.+++- ..
T Consensus 1 G~livl~GpsG~GK~tl~~~l~~~~~~~~~~vs~TTR~~R~gE~dG~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~YGt~ 80 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGTP 80 (180)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCEEEECHHHHHHHHHCCEEEEEEEECCCCCCCC
T ss_conf 93999989998899999999997689944887044689799877887347850899999986496488767716763574
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 545554311234215640354320022345667885212224507889789999999986662897
Q gi|254780567|r 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 (246)
Q Consensus 127 f~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~ 192 (246)
...+......|+.+++--+. .. ...|+.......++-|.||+.+.+..-| ..||-.
T Consensus 81 ~~~i~~~~~~gk~vil~id~-----~G-~~~lk~~~~~~~~IfI~pps~~~L~~RL----~~Rg~e 136 (180)
T TIGR03263 81 KSPVEEALAAGKDVLLEIDV-----QG-ARQVKKKFPDAVSIFILPPSLEELERRL----RKRGTD 136 (180)
T ss_pred HHHHHHHHHHCCCEEEECCH-----HH-HHHHHHHCCCEEEEEEECCCHHHHHHHH----HHCCCC
T ss_conf 79999999609989998789-----99-9999975886489999688999999999----964899
No 200
>TIGR01817 nifA Nif-specific regulatory protein; InterPro: IPR010113 This entry represents NifA, a DNA-binding regulatory protein for nitrogen fixation. Not included in this group are: the homologue in Aquifex aeolicus (which lacks nitrogenase), transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. In diazotrophic proteobacteria, the sigma54-dependent activator NifA activates transcription of the nif (nitrogen fixation) genes by a conserved mechanism common to members of the enhancer binding protein family. Although NifA proteins have similar domain structures, both transcriptional regulation of nifA expression and posttranslational regulation of NifA activity by oxygen and fixed nitrogen vary significantly from one organism to another. In Klebsiella pneumoniae and Azotobacter vinelandii, nifA is co-ordinately transcribed with a second gene, nifL, whose product inhibits NifA activity in response to oxygen and fixed nitrogen .; GO: 0003677 DNA binding, 0016563 transcription activator activity, 0009399 nitrogen fixation.
Probab=97.00 E-value=0.0085 Score=37.10 Aligned_cols=197 Identities=19% Similarity=0.205 Sum_probs=126.8
Q ss_pred CCCCCCCCCCEEECCCHH--HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHH-----CCCCHHHHHHHHHH---
Q ss_conf 877668845416536189--99999985101678849998787778688999999862-----76201356764445---
Q gi|254780567|r 33 PRCLGISRDDLLVHSAIE--QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS-----RSTRFSNIAKSLDS--- 102 (246)
Q Consensus 33 ~~~~~~~~dnFiv~~~N~--~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~-----~~~~~~~~~~~~~~--- 102 (246)
.-..++...|-|||+|-. .+++.+.....| +..+.+=|++|+||=-.++++=..+ -.+++.+.++....
T Consensus 203 ~~~~~~~~~~~i~G~Spam~~v~~~~~~vA~~-nSTVLlRGESGTGKEl~A~AIH~~SpR~~~PFVK~NCAALse~lLES 281 (574)
T TIGR01817 203 AARRRSGKEDGIVGKSPAMRQVVDQIKVVARS-NSTVLLRGESGTGKELIAKAIHELSPRAKRPFVKLNCAALSETLLES 281 (574)
T ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCC-CCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCEEEECCCCCCCHHHH
T ss_conf 12331234474012478999999886520131-76678505657443344423404664557885450064477611245
Q ss_pred -HHHHHH-------------------HHHHHHHHHCCCCC-CHHHHHHHHH----------HHCCCCCEEEEECCCCCC-
Q ss_conf -466666-------------------65334332100376-1033545554----------311234215640354320-
Q gi|254780567|r 103 -ILIDTR-------------------KPVLLEDIDLLDFN-DTQLFHIINS----------IHQYDSSLLMTARTFPVS- 150 (246)
Q Consensus 103 -~~~~~~-------------------~~i~iddi~~~~~~-ee~lf~l~n~----------~~~~~~~iilts~~~p~~- 150 (246)
.|-+.. ..+.+|.|--+.=. |-.|+=.+.+ ...=+-++|.+.++.-..
T Consensus 282 ELFGHEKGAFTGA~~~RkGRFElAdGGTLFLDEIGEISPaFQAKLLRVLQEGEFERVGG~~TlKVdVRlvaATNrdLE~a 361 (574)
T TIGR01817 282 ELFGHEKGAFTGAVAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEA 361 (574)
T ss_pred HHHCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCEEEEEEEEEEECCCCCHHHH
T ss_conf 45134301468887517775330278832000014678568889988752100253278724887367886137355889
Q ss_pred --HHHHHHHHHHHHHHCCEEEECCCC----H--HHHHHHHHHHHH--HCC-CCCCHHHHHHHHHC-CCCCHHHHHHHHHH
Q ss_conf --022345667885212224507889----7--899999999866--628-97988999999940-66798999999999
Q gi|254780567|r 151 --WGVCLPDLCSRLKAATVVKISLPD----D--DFLEKVIVKMFA--DRQ-IFIDKKLAAYIVQR-MERSLVFAEKLVDK 218 (246)
Q Consensus 151 --~~~~l~DL~SRl~~g~~~~I~~pd----d--e~~~~il~k~~~--~r~-i~l~~~v~~yl~~r-~~Rs~~~l~~~l~~ 218 (246)
-.-+.+||-=|++-+ -+.|+|+= | .+-...|.|... .|. +.+++.+++.|++. ++.++|+|++.|++
T Consensus 362 V~~GeFRaDLYYRinVv-Pl~lPPLRER~~DIP~LA~~fL~kf~~en~R~mL~~~~~Ai~~Lm~c~wPGNVRELENC~eR 440 (574)
T TIGR01817 362 VAKGEFRADLYYRINVV-PLILPPLRERREDIPLLAEAFLEKFNRENGRPMLTLSPSAIRVLMSCKWPGNVRELENCVER 440 (574)
T ss_pred HHCCCCCCHHHHHHHHH-HHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHCCCCCCCCEEHHHHHHH
T ss_conf 72789730235544222-34078777873116899999999876651872032267899897517899974004437877
Q ss_pred HHHHHHHHCCCCCHH
Q ss_conf 999999847787889
Q gi|254780567|r 219 MDNLALSRGMGITRS 233 (246)
Q Consensus 219 Ld~~sl~~kr~ITi~ 233 (246)
.+.|+...-||-.
T Consensus 441 --tAtLs~~~~It~~ 453 (574)
T TIGR01817 441 --TATLSRSGTITRS 453 (574)
T ss_pred --HHHHCCCCCCCCC
T ss_conf --8754168851642
No 201
>PRK13695 putative NTPase; Provisional
Probab=96.99 E-value=0.0035 Score=39.48 Aligned_cols=61 Identities=10% Similarity=0.336 Sum_probs=35.2
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHH
Q ss_conf 533433210037610335455543112342156403543200223456678852122245078897899
Q gi|254780567|r 110 PVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178 (246)
Q Consensus 110 ~i~iddi~~~~~~ee~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~ 178 (246)
.+++|.+-.+.-.-..+...+..+..+++.++.|-.. | ...++++| .+-++++.+-+-+.+
T Consensus 102 livIDEIG~MEl~s~~F~~~V~~~L~s~kpvl~tih~-p-----~v~~ik~~--~~~v~~vT~~NRd~l 162 (174)
T PRK13695 102 LIIIDEIGPMELKSKKFVSAVEEVLKSEKPVIATVHR-P-----VVQRIRSL--GGEVFWLTPENRNIL 162 (174)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECH-H-----HHHHHHCC--CCEEEEECHHHHHHH
T ss_conf 9999631033110499999999997389989999775-8-----88986337--989999893467755
No 202
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family; InterPro: IPR014324 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding subunit DevA, found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The ABC transporter encoded by the devBCA operon is induced by nitrogen deficiency and is necessary for the formation of the laminated layer which envelops heterocysts , . It is thought to be involved in the export of either the heterocyst-specific glycolipids found in the laminated layer, or an enzyme essential for their formation..
Probab=96.97 E-value=0.00061 Score=44.15 Aligned_cols=23 Identities=52% Similarity=0.863 Sum_probs=19.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 67884999878777868899999
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIW 84 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~ 84 (246)
.|+-.+++.||||||||.||.-+
T Consensus 29 ~~GEiViltGPSGSGKTTLLtLi 51 (220)
T TIGR02982 29 NPGEIVILTGPSGSGKTTLLTLI 51 (220)
T ss_pred CCCEEEEEECCCCCCHHHHHHHH
T ss_conf 17647984378898468899988
No 203
>PRK05201 hslU ATP-dependent protease ATP-binding subunit; Provisional
Probab=96.95 E-value=0.0016 Score=41.53 Aligned_cols=130 Identities=13% Similarity=0.246 Sum_probs=78.2
Q ss_pred HHHHHHHHHCCCCC-------------CHHHHHHHHHHHCCC-------CCEEEEECCC-----CCCHHHHHHHHHHHHH
Q ss_conf 65334332100376-------------103354555431123-------4215640354-----3200223456678852
Q gi|254780567|r 109 KPVLLEDIDLLDFN-------------DTQLFHIINSIHQYD-------SSLLMTARTF-----PVSWGVCLPDLCSRLK 163 (246)
Q Consensus 109 ~~i~iddi~~~~~~-------------ee~lf~l~n~~~~~~-------~~iilts~~~-----p~~~~~~l~DL~SRl~ 163 (246)
.++.+|.++.+... |..|+-++....-+- ..++|.+... |++ ..|.|.-||-
T Consensus 250 GIVFIDEIDKIa~~~~~~g~DVS~EGVQrdLLpivEGt~V~tK~G~V~TdhILFIasGAFh~sKPSD---LIPEl~GRlP 326 (442)
T PRK05201 250 GIVFIDEIDKIAKRGEGSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVAKPSD---LIPELQGRFP 326 (442)
T ss_pred CCEEECHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCH---HHHHHCCCCE
T ss_conf 7045114656530357889897733078887887538855567776025503455045001478202---2498717550
Q ss_pred HCCEEEECCCCHHHHHHHHHH-----------HHHHCCCC--CCHHHHHHHHHCCC---C-----CHHHHHHHHHHHH-H
Q ss_conf 122245078897899999999-----------86662897--98899999994066---7-----9899999999999-9
Q gi|254780567|r 164 AATVVKISLPDDDFLEKVIVK-----------MFADRQIF--IDKKLAAYIVQRME---R-----SLVFAEKLVDKMD-N 221 (246)
Q Consensus 164 ~g~~~~I~~pdde~~~~il~k-----------~~~~r~i~--l~~~v~~yl~~r~~---R-----s~~~l~~~l~~Ld-~ 221 (246)
..+++++++.+.+..||.. .+...|+. +.++.++.|++.-- + -.+.+.++++++- .
T Consensus 327 --v~v~L~~L~~~dl~~ILtepknsL~kQy~~Lf~~egv~L~Ft~~Al~~IA~~A~~~n~~~~~iGAR~L~tI~E~vl~d 404 (442)
T PRK05201 327 --IRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLED 404 (442)
T ss_pred --EEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf --588824499999999967861578999999986249679984799999999999851447667737889999999898
Q ss_pred HHHH------HCCCCCHHHHHHHHHHHH
Q ss_conf 9998------477878899999998674
Q gi|254780567|r 222 LALS------RGMGITRSLAAEVLKETQ 243 (246)
Q Consensus 222 ~sl~------~kr~ITi~lvk~vL~~~~ 243 (246)
.+.. .+-.||-..|++-|.+..
T Consensus 405 ~~Fe~p~~~~~~v~I~~~~V~~~l~~i~ 432 (442)
T PRK05201 405 ISFEAPDRSGEKITIDAAYVDEKLGDLV 432 (442)
T ss_pred HCCCCCCCCCCEEEECHHHHHHHHHHHH
T ss_conf 6146889999779988999999998876
No 204
>pfam00625 Guanylate_kin Guanylate kinase.
Probab=96.94 E-value=0.0022 Score=40.73 Aligned_cols=114 Identities=17% Similarity=0.162 Sum_probs=56.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCHHH---HHHH--HHHHHHHHHHHHH-------HHHHHCCCCCC-----H-HH
Q ss_conf 8499987877786889999998627620135---6764--4454666666533-------43321003761-----0-33
Q gi|254780567|r 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSN---IAKS--LDSILIDTRKPVL-------LEDIDLLDFND-----T-QL 126 (246)
Q Consensus 65 ~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~---~~~~--~~~~~~~~~~~i~-------iddi~~~~~~e-----e-~l 126 (246)
++++|.||+|+|||.|++.+..+....+... .+-. ........+.++. +..-.++.+++ - ..
T Consensus 2 klivl~GPSG~GK~tl~~~L~~~~~~~~~~~vs~TTR~~R~~E~~G~dY~Fvs~~~F~~~i~~~~FlE~~~~~g~~YGt~ 81 (182)
T pfam00625 2 RPIVLSGPSGVGKSHIKKALLDEYPEKFGYSVSHTTRPPRPGEVDGKDYHFVSKEEMENDISANEFLEHAEFNGNYYGTS 81 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEC
T ss_conf 86999898999999999999984866734457655479998787896579965899999875437776264079725640
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHH
Q ss_conf 5455543112342156403543200223456678852122245078897899999999
Q gi|254780567|r 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 (246)
Q Consensus 127 f~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k 184 (246)
..-+......|+.+++-.+ +.. ...|+.+.-...++=|.||+.+.+...|.+
T Consensus 82 ~~~I~~~~~~g~~vvl~id--~~g----~~~lk~~~~~~~~IfI~pps~~~L~~RL~~ 133 (182)
T pfam00625 82 KEAIEQIAESGKICILDVD--IQG----VKQLRKAELSPISVFIKPPSLKVLQRRLKG 133 (182)
T ss_pred HHHHHHHHHCCCEEEEEEC--HHH----HHHHHHHCCCCEEEEEECCCHHHHHHHHHH
T ss_conf 2777999867996999972--899----999987495748999938799999999981
No 205
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.93 E-value=0.0056 Score=38.22 Aligned_cols=119 Identities=15% Similarity=0.205 Sum_probs=62.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCCH---------HHHH---HHHHH------------H----------------
Q ss_conf 884999878777868899999986276201---------3567---64445------------4----------------
Q gi|254780567|r 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRF---------SNIA---KSLDS------------I---------------- 103 (246)
Q Consensus 64 ~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~---------~~~~---~~~~~------------~---------------- 103 (246)
...+.|.||+|+||+.|+..+++.--.... .+.. ....+ .
T Consensus 25 ~HA~L~~g~~G~Gk~~la~~la~~LlC~~~~~~~Cg~C~sC~l~~~g~HPD~~~i~pe~~~k~I~vd~IR~l~~~~~~~~ 104 (319)
T PRK06090 25 PGALLLQSDEGLGVESLVELFSHALLCQNYQSEACGFCHSCELMKSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQESS 104 (319)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 30676679998579999999999980899999988778779998758999823661233567687999999999975452
Q ss_pred HHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHCCC--CCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHH
Q ss_conf 6666665334332100376-103354555431123--4215640354320022345667885212224507889789999
Q gi|254780567|r 104 LIDTRKPVLLEDIDLLDFN-DTQLFHIINSIHQYD--SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 (246)
Q Consensus 104 ~~~~~~~i~iddi~~~~~~-ee~lf~l~n~~~~~~--~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~ 180 (246)
....+++++|++.+.++.. ..+|+-++ .+-. ...+++++ .|.. .++-++||+. .+.+.+|+.+....
T Consensus 105 ~~g~~KV~iI~~ae~m~~~AaNALLKtL---EEPp~~t~fiL~t~-~~~~---ll~TI~SRCq---~~~l~~p~~~~~~~ 174 (319)
T PRK06090 105 QLGGYRLFVIEPADAMNESASNALLKTL---EEPAPNCLFLLVTH-NQKR---LLPTIVSRCQ---QWVVTPPSTDQAMQ 174 (319)
T ss_pred CCCCCEEEEECCHHHCCHHHHHHHHHHH---CCCCCCEEEEEEEC-CHHH---CCCCHHHCCC---CCCCCCCCHHHHHH
T ss_conf 1069369998144434999999999984---28998838998768-5120---8641876144---50289959999999
Q ss_pred HHHHHHHHCCCCCCHH
Q ss_conf 9999866628979889
Q gi|254780567|r 181 VIVKMFADRQIFIDKK 196 (246)
Q Consensus 181 il~k~~~~r~i~l~~~ 196 (246)
-|+.. ++..+..
T Consensus 175 WL~~q----~~~~~~~ 186 (319)
T PRK06090 175 WLKGQ----GISVPAY 186 (319)
T ss_pred HHHHH----CCCCHHH
T ss_conf 99884----8755799
No 206
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.90 E-value=0.0057 Score=38.18 Aligned_cols=116 Identities=21% Similarity=0.286 Sum_probs=55.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HHHHHHHHHHH-CCCCCCHHHHHHHHHHHC-C--CCCEE
Q ss_conf 9998787778688999999862762013567644454666-66653343321-003761033545554311-2--34215
Q gi|254780567|r 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID-TRKPVLLEDID-LLDFNDTQLFHIINSIHQ-Y--DSSLL 141 (246)
Q Consensus 67 l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~iddi~-~~~~~ee~lf~l~n~~~~-~--~~~ii 141 (246)
+++.||||||||..+.-++++++...++.....-...... .....+-+.+. +..-..+.+..++-.... . .+..|
T Consensus 2 i~l~G~PGsGKgTqa~~La~~~~~~~is~gdlLR~~~~~~t~~g~~i~~~~~~G~lvp~~i~~~l~~~~l~~~~~~~g~i 81 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPDCKKGFI 81 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCEEECHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 89989999987999999999979846768899999997499589999999987997789999999999984765438778
Q ss_pred EEECCCCCCHHHHHHHHHHHH----HHCCEEEECCCCHHHHHHHHHHH
Q ss_conf 640354320022345667885----21222450788978999999998
Q gi|254780567|r 142 MTARTFPVSWGVCLPDLCSRL----KAATVVKISLPDDDFLEKVIVKM 185 (246)
Q Consensus 142 lts~~~p~~~~~~l~DL~SRl----~~g~~~~I~~pdde~~~~il~k~ 185 (246)
+ +.-|....-. +-|...+ ..-.++.+.-+++.+...++.+.
T Consensus 82 l--DGfPR~~~Qa-~~l~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~ 126 (194)
T cd01428 82 L--DGFPRTVDQA-EALDELLDEGIKPDKVIELDVPDEVLIERILGRR 126 (194)
T ss_pred E--ECCCCCHHHH-HHHHHHHHCCCCCCEEEEEECCHHHHHHHHHCCC
T ss_conf 7--4797989999-9999999739987889999668999999996467
No 207
>PRK08118 topology modulation protein; Reviewed
Probab=96.90 E-value=0.035 Score=33.28 Aligned_cols=127 Identities=17% Similarity=0.166 Sum_probs=70.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHCCCCCE
Q ss_conf 8499987877786889999998627620135676444546666665334332100376----103354555431123421
Q gi|254780567|r 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN----DTQLFHIINSIHQYDSSL 140 (246)
Q Consensus 65 ~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iddi~~~~~~----ee~lf~l~n~~~~~~~~i 140 (246)
+-+.|.|++|||||+|++.++...+--++ -+|.+.-.+++ .+++......+... ..-
T Consensus 2 ~rI~IiG~~GsGKSTlAr~L~~~~~ip~~------------------~LD~l~w~~~w~~~~~~e~~~~~~~~~~~-~~W 62 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVH------------------HLDALFWKPNWEGVPKEEQRTVQNELVKE-DEW 62 (167)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEE------------------ECCCEEECCCCCCCCHHHHHHHHHHHHHC-CCE
T ss_conf 67999889998799999999998896979------------------64434766899468889999999999838-987
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCC-----------CCHHHHHHHHHCCCCCH
Q ss_conf 5640354320022345667885212224507889789999999986662897-----------98899999994066798
Q gi|254780567|r 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF-----------IDKKLAAYIVQRMERSL 209 (246)
Q Consensus 141 ilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~-----------l~~~v~~yl~~r~~Rs~ 209 (246)
|+-+... +.+...++ .+-+++=+..|--..+..++++....++-. ++-+-+.|+.+.-.+.-
T Consensus 63 IidGny~-~~~~~r~~------~aD~iI~Ld~p~~~~~~r~~kR~~~~~~~~r~d~~~g~~E~~~~~fl~wi~~~~~~~r 135 (167)
T PRK08118 63 IIDGNYG-GTMDIRLN------AADTIIFLDIPRTICLYRAFKRRVQYRGKTRPDMGEGCPEKFDLQFFKWIWEYPKTKR 135 (167)
T ss_pred EEECCCH-HHHHHHHH------HCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHCC
T ss_conf 9947717-79987797------6999999859899999999999999817757656899936250999999985840101
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780567|r 210 VFAEKLVD 217 (246)
Q Consensus 210 ~~l~~~l~ 217 (246)
..+...++
T Consensus 136 ~~~~~~l~ 143 (167)
T PRK08118 136 PSILKRLN 143 (167)
T ss_pred HHHHHHHH
T ss_conf 99999998
No 208
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.88 E-value=0.00095 Score=42.94 Aligned_cols=24 Identities=38% Similarity=0.664 Sum_probs=21.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 788499987877786889999998
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSD 86 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~ 86 (246)
++.++.|-||+|||||.||++++-
T Consensus 30 ~Gef~tlLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 30 KGEFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 886899989988888999999967
No 209
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=96.88 E-value=0.0055 Score=38.25 Aligned_cols=180 Identities=11% Similarity=0.130 Sum_probs=102.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCC----------CHHHHHHHH-------------------HHHHHHHHH-HH
Q ss_conf 678849998787778688999999862762----------013567644-------------------454666666-53
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDKSRST----------RFSNIAKSL-------------------DSILIDTRK-PV 111 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~----------~~~~~~~~~-------------------~~~~~~~~~-~i 111 (246)
..+|||+ .|+||+|||=++.-+|...-.- .+|..+... ....-.... ++
T Consensus 228 ~KNNPl~-VGEPGVGKTAI~EGLA~~I~~~~kvPe~Lkn~~IY~LDmG~LLAGTKYRGDFE~RLK~V~~Ei~~~~~anIL 306 (774)
T TIGR02639 228 KKNNPLL-VGEPGVGKTAIVEGLAQRIAEGQKVPEVLKNAKIYSLDMGTLLAGTKYRGDFEERLKAVVSEIEKEPNANIL 306 (774)
T ss_pred CCCCCCE-ECCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCEEEECHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 6788720-448886448999999998641564670024783454043456410245424789999999998528999546
Q ss_pred HHHHHHCCCCC---CHH---HHHHHHHHHCCCCCEEEEECCCCCCH-HHHHHH--HHHHHHHCCEEEECCCCHHHHHHHH
Q ss_conf 34332100376---103---35455543112342156403543200-223456--6788521222450788978999999
Q gi|254780567|r 112 LLEDIDLLDFN---DTQ---LFHIINSIHQYDSSLLMTARTFPVSW-GVCLPD--LCSRLKAATVVKISLPDDDFLEKVI 182 (246)
Q Consensus 112 ~iddi~~~~~~---ee~---lf~l~n~~~~~~~~iilts~~~p~~~-~~~l~D--L~SRl~~g~~~~I~~pdde~~~~il 182 (246)
.||.||.+-|- -+. .=+++-=...+|+ +=+-++..-.+. +++.+| |.=||. -+.|++|+.|+...||
T Consensus 307 FIDEIHTIVGAGATSGGsmDASNLLKPaL~~G~-iRCIGsTTy~EY~~~FeKDrALsRRFQ---KIDv~EPs~eet~~IL 382 (774)
T TIGR02639 307 FIDEIHTIVGAGATSGGSMDASNLLKPALASGK-IRCIGSTTYEEYKNHFEKDRALSRRFQ---KIDVGEPSIEETVKIL 382 (774)
T ss_pred EEECCCCEEECCCCCCHHHHHHHHHHHHHHCCC-EEEECCCCHHHHHCHHHCCCCCCCCCC---EECCCCCCHHHHHHHH
T ss_conf 641101033178787515524432112530787-786226524864111010202165423---3117957888999999
Q ss_pred HHHH---HH-CCCCCCHHHHHHHHHCCCCCH------HHHHHHHHHHHHHH-----HHHCCC--------------CCHH
Q ss_conf 9986---66-289798899999994066798------99999999999999-----984778--------------7889
Q gi|254780567|r 183 VKMF---AD-RQIFIDKKLAAYIVQRMERSL------VFAEKLVDKMDNLA-----LSRGMG--------------ITRS 233 (246)
Q Consensus 183 ~k~~---~~-r~i~l~~~v~~yl~~r~~Rs~------~~l~~~l~~Ld~~s-----l~~kr~--------------ITi~ 233 (246)
+=.= .. ..+..+++++++-+.=..|=. -.++-+++..-+.. -..+.. |+++
T Consensus 383 kGLk~~YE~fH~V~Y~~eal~~Av~LS~ryI~DRfLPDKAIDviDEaGA~~~l~~~~~~~~~eadekGleetalPev~~~ 462 (774)
T TIGR02639 383 KGLKEQYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVIDEAGAAFRLRAKAKKKANEADEKGLEETALPEVNVK 462 (774)
T ss_pred HHHHHHHHCCCCEECCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCHH
T ss_conf 86554201325011386999999999888602578985432288999999997120277643201125300047878544
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 9999998674188
Q gi|254780567|r 234 LAAEVLKETQQCD 246 (246)
Q Consensus 234 lvk~vL~~~~~~d 246 (246)
-|.+|+..+-+++
T Consensus 463 diE~vvak~a~iP 475 (774)
T TIGR02639 463 DIEEVVAKMAKIP 475 (774)
T ss_pred HHHHHHHHHHCCC
T ss_conf 4999998871899
No 210
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.88 E-value=0.00098 Score=42.86 Aligned_cols=24 Identities=42% Similarity=0.724 Sum_probs=21.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 788499987877786889999998
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSD 86 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~ 86 (246)
.+.++.|-||+|||||.||+++|-
T Consensus 28 ~Gef~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 28 DGEFVVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 797999989998888999999968
No 211
>pfam06414 Zeta_toxin Zeta toxin. This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.
Probab=96.85 E-value=0.017 Score=35.24 Aligned_cols=143 Identities=13% Similarity=0.051 Sum_probs=72.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHHH-HHHCCC----CCCHHHHHHHHHHH
Q ss_conf 788499987877786889999998627---6201356764445466666653343-321003----76103354555431
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDKSR---STRFSNIAKSLDSILIDTRKPVLLE-DIDLLD----FNDTQLFHIINSIH 134 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~id-di~~~~----~~ee~lf~l~n~~~ 134 (246)
.-+.+++-|+||+|||.++..+..... .+.++...... ....+..+.-. ..+... ....+.=.++..+.
T Consensus 11 ~Pkai~laG~pGAGKS~~~~~~~~~~~~~~~v~In~D~~r~---~~P~y~~l~~~~~~~~~~~~~~~a~~~~~~~~~~a~ 87 (191)
T pfam06414 11 RPVAVLLGGQPGAGKTELARALLEELGGGNVVRIDPDELRT---YHPDYDELQKADPKDASELTQPDASRWVEKLIDYAI 87 (191)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCHHHHH---HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98799995799888899999998753789938971358788---777478655407677899989999999999999999
Q ss_pred CCCCCEEEEECCC-CCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHH--CCCCCCHHHHHHHHHCCCCC
Q ss_conf 1234215640354-32002234566788521222450788978999999998666--28979889999999406679
Q gi|254780567|r 135 QYDSSLLMTARTF-PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD--RQIFIDKKLAAYIVQRMERS 208 (246)
Q Consensus 135 ~~~~~iilts~~~-p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~--r~i~l~~~v~~yl~~r~~Rs 208 (246)
+.+..+++=+... |....-....|+..=-...++-+.-|.+..+..+..++-.+ .|=.+|+++.+-....+..+
T Consensus 88 ~~r~n~iiegT~~~~~~~~~~~~~lk~~GY~v~v~~Va~~~e~S~~r~~~Ry~~~~~~gR~v~~~~hd~~~~~~~~~ 164 (191)
T pfam06414 88 ERGYNIILEGTLRSPDVARKLARKLKAAGYEVEVYVVAVPPELSWLGVLDRYEEELAAGRRVPKEVHDAAYNGLPES 164 (191)
T ss_pred HCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf 75999898577789799999999999789979999998899999999999998510578748999999999859999
No 212
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.81 E-value=0.011 Score=36.43 Aligned_cols=42 Identities=17% Similarity=0.098 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 6189999999851016788499987877786889999998627
Q gi|254780567|r 47 SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR 89 (246)
Q Consensus 47 ~~N~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~ 89 (246)
.-+....+++..+... ...++|.||.|||||.+++++++...
T Consensus 9 ~~~~~~~~~L~~~v~~-~~nIlIsG~tGSGKTTll~al~~~i~ 50 (186)
T cd01130 9 TFSPLQAAYLWLAVEA-RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCCHHHHHHHHHHHHC-CCCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 9999999999999985-99899989999989999999996133
No 213
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.79 E-value=0.0084 Score=37.12 Aligned_cols=33 Identities=18% Similarity=0.330 Sum_probs=27.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHH
Q ss_conf 884999878777868899999986276201356
Q gi|254780567|r 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNI 96 (246)
Q Consensus 64 ~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~ 96 (246)
.+.++|.|.+|||||++++.+++..+..+++..
T Consensus 4 ~~nI~liG~~GsGKTtvgk~LA~~L~~~fiD~D 36 (175)
T PRK00131 4 GPNIVLIGMMGAGKSTIGRLLAKRLGYEFIDTD 36 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf 980898889999989999999999596902398
No 214
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.78 E-value=0.0013 Score=42.09 Aligned_cols=25 Identities=48% Similarity=0.688 Sum_probs=21.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 6788499987877786889999998
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSD 86 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~ 86 (246)
.++..+.|.||+|||||.|+++++.
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 4998999989999989999999964
No 215
>PRK13947 shikimate kinase; Provisional
Probab=96.76 E-value=0.0092 Score=36.87 Aligned_cols=33 Identities=15% Similarity=0.225 Sum_probs=27.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 849998787778688999999862762013567
Q gi|254780567|r 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIA 97 (246)
Q Consensus 65 ~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~ 97 (246)
+.++|.|.+|||||++.+.+++..+..+++...
T Consensus 2 knI~LiG~mGsGKTtiGk~La~~L~~~fiD~D~ 34 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKKVATTLSFGFIDTDK 34 (171)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCEEECHH
T ss_conf 858997999998899999999997969898749
No 216
>pfam07726 AAA_3 ATPase family associated with various cellular activities (AAA). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=96.74 E-value=0.0013 Score=42.04 Aligned_cols=27 Identities=26% Similarity=0.204 Sum_probs=23.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCH
Q ss_conf 999878777868899999986276201
Q gi|254780567|r 67 VILVGPSGSGKSCLANIWSDKSRSTRF 93 (246)
Q Consensus 67 l~i~G~~GsGKTHLl~a~~~~~~~~~~ 93 (246)
++|+||+|+|||.|++++|+..+..+.
T Consensus 2 VLL~GppG~GKT~l~~~lA~~~~~~~~ 28 (131)
T pfam07726 2 VLLEGVPGLAKTLLARTLARSLGLDFR 28 (131)
T ss_pred EEEECCCCCHHHHHHHHHHHHHCCCCE
T ss_conf 878989987699999999999599816
No 217
>PRK08487 DNA polymerase III subunit delta; Validated
Probab=96.72 E-value=0.05 Score=32.37 Aligned_cols=75 Identities=16% Similarity=0.130 Sum_probs=59.7
Q ss_pred HHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 2122245078897899999999866628979889999999406679899999999999999984778788999999986
Q gi|254780567|r 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 (246)
Q Consensus 163 ~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~ITi~lvk~vL~~ 241 (246)
..+..++.-+|+.......++..+...|++++++++.+|+.+..-|+..+ .+.|+.+++. +++||...|.++.-.
T Consensus 125 ~~~~~V~ff~p~~~el~~~i~~~ak~~g~~Is~~al~~L~e~~g~dL~~~---~nELeKL~l~-~~~It~edI~~l~~~ 199 (328)
T PRK08487 125 FIAKFVRFFKPNAWEALKLLQERAKELGLDIDQNALNHLFEIQNENLYLA---ANELEKLAIL-DAPITLKDIDRLVFG 199 (328)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHH---HHHHHHHHHC-CCCCCHHHHHHHHCC
T ss_conf 36237751399868999999999999199779999999999859639999---9899999853-787889999998557
No 218
>pfam00437 GSPII_E Type II/IV secretion system protein. This family contains both type II and type IV pathway secretion proteins from bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection.
Probab=96.71 E-value=0.0028 Score=40.11 Aligned_cols=54 Identities=19% Similarity=0.244 Sum_probs=35.1
Q ss_pred CCCCCCCCEEECCC-HHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 76688454165361-89999999851016788499987877786889999998627
Q gi|254780567|r 35 CLGISRDDLLVHSA-IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR 89 (246)
Q Consensus 35 ~~~~~~dnFiv~~~-N~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~ 89 (246)
...++.+++..... ......++..... ....+++.||.|||||.+++++.....
T Consensus 110 ~~~~tl~~L~~~g~~~~~~~~~L~~~v~-~~~~ilIsG~TGSGKTT~l~all~~i~ 164 (283)
T pfam00437 110 SRSLTLDDLGMTGAFDADIAEFLRQAVQ-ARGNILVSGGTGSGKTTLLYALLNEIN 164 (283)
T ss_pred CCCCCHHHHCCCCCCHHHHHHHHHHHHH-CCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 7789999973897785999999999998-197599988999988999999998408
No 219
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.70 E-value=0.0016 Score=41.58 Aligned_cols=25 Identities=48% Similarity=0.566 Sum_probs=22.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 6788499987877786889999998
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSD 86 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~ 86 (246)
.++..+.|.||+|||||.|+++++-
T Consensus 22 ~~Ge~~~i~GpSGsGKSTLL~~i~g 46 (206)
T TIGR03608 22 EKGKMVAIVGESGSGKSTLLNIIGL 46 (206)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 6998999987999709999999975
No 220
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.70 E-value=0.013 Score=35.97 Aligned_cols=34 Identities=26% Similarity=0.455 Sum_probs=28.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHH
Q ss_conf 7884999878777868899999986276201356
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNI 96 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~ 96 (246)
..+.++|.|.+|||||++.+.+++..+..+++..
T Consensus 3 ~kknI~LiG~mGsGKstvgk~LA~~l~~~fiD~D 36 (172)
T PRK05057 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSD 36 (172)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCCCEEECH
T ss_conf 8882898899999889999999999699968780
No 221
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=96.68 E-value=0.013 Score=36.05 Aligned_cols=36 Identities=17% Similarity=-0.016 Sum_probs=24.9
Q ss_pred HHHHHHHHHC-C-CCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 9999985101-6-7884999878777868899999986
Q gi|254780567|r 52 AVRLIDSWPS-W-PSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 52 A~~~i~~~~~-~-~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
|+..+.+..+ + -.+...++||.|+||+.++..++..
T Consensus 5 ~We~L~~~i~~~Rl~HAyLf~Gp~G~GK~~~A~~~A~~ 42 (290)
T PRK05917 5 AWEALLQRVRDQKVPSAILLHGQDLSNLSQYAYELASL 42 (290)
T ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99999999983996606876899986599999999999
No 222
>pfam00910 RNA_helicase RNA helicase. This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.
Probab=96.68 E-value=0.0012 Score=42.26 Aligned_cols=53 Identities=23% Similarity=0.246 Sum_probs=30.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 999878777868899999986276---------201356764445466666653343321003
Q gi|254780567|r 67 VILVGPSGSGKSCLANIWSDKSRS---------TRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120 (246)
Q Consensus 67 l~i~G~~GsGKTHLl~a~~~~~~~---------~~~~~~~~~~~~~~~~~~~~i~iddi~~~~ 120 (246)
++||||+|+|||++++.++.+... .|.........+- -.....+++||+....
T Consensus 1 i~l~G~~G~GKS~~a~~la~~~~~~~~~~~~~~~Y~~~~~~~~wdg-Y~gq~vvi~DD~~~~~ 62 (105)
T pfam00910 1 IWLYGPPGCGKSTLAKYLARALLDHLGLPKKDSVYSRNPDDDFWDG-YTGQPVVIIDDFGQNP 62 (105)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCC-CCCCEEEEEECCCCCC
T ss_conf 9897999898899999999999998377878977967887765678-8998579996577788
No 223
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=96.68 E-value=0.0039 Score=39.20 Aligned_cols=112 Identities=17% Similarity=0.128 Sum_probs=57.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCCHHH---HHHHH--H---------------HHHHHHHHHHHHHHHHC-CCCC
Q ss_conf 88499987877786889999998627620135---67644--4---------------54666666533433210-0376
Q gi|254780567|r 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSN---IAKSL--D---------------SILIDTRKPVLLEDIDL-LDFN 122 (246)
Q Consensus 64 ~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~---~~~~~--~---------------~~~~~~~~~i~iddi~~-~~~~ 122 (246)
-++++|.||+|+|||.|.+.++......+... .+-.. . ...+....++-....++ ..|
T Consensus 2 ~r~iil~Gpsg~GK~tl~~~l~~~~~~~~~~~v~~TTR~~r~gE~~G~dY~Fvs~~~F~~~i~~~~flE~~~~~g~~YG- 80 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYG- 80 (184)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCEEEEEEHHHHHHHHHCCHHHHHHHHCCCCCC-
T ss_conf 9779999999999999999998639645057787672799889999963699717999999872741788874787754-
Q ss_pred CHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHH
Q ss_conf 10335455543112342156403543200223456678852122245078897899999999
Q gi|254780567|r 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 (246)
Q Consensus 123 ee~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k 184 (246)
.-...+......|+.+++-.+ |.. ...|+...-...++=|.||+.+.+..-|..
T Consensus 81 --t~~~~I~~~~~~g~~~ildi~--~~g----~~~l~~~~~~~~~Ifi~pps~e~L~~RL~~ 134 (184)
T smart00072 81 --TSKETIRQVAEQGKHCLLDID--PQG----VKQLRKAQLYPIVIFIAPPSSEELERRLRG 134 (184)
T ss_pred --CHHHHHHHHHCCCCEEEEEEC--HHH----HHHHHHHCCCCEEEEEECCCHHHHHHHHHC
T ss_conf --106789998726986999962--999----999998588807999938999999999971
No 224
>pfam06144 DNA_pol3_delta DNA polymerase III, delta subunit. DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction. The delta subunit is also known as HolA.
Probab=96.68 E-value=0.016 Score=35.35 Aligned_cols=80 Identities=20% Similarity=0.134 Sum_probs=60.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 34215640354320022345667885212224507889789999999986662897988999999940667989999999
Q gi|254780567|r 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216 (246)
Q Consensus 137 ~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l 216 (246)
...+|+.+...+..-. .-...--+.|.+++..+|+...+...+...+...|+.+++++++||++++..++..+..-+
T Consensus 91 ~~~lv~~~~~~~~~~~---k~~k~l~k~~~~i~~~~~~~~~l~~wi~~~~~~~g~~i~~~a~~~L~~~~g~nl~~l~~Ei 167 (172)
T pfam06144 91 DTLLIIEAPGKLDERK---KLTKLLKKKATVVECFTLKEEELIQWIQKRAKELGLKIEKDALQLLAEKVENNLLAIAQEL 167 (172)
T ss_pred CEEEEEEECCCHHHHH---HHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCHHHHHHHHHH
T ss_conf 7289998367413678---8899998376699934898789999999999984999899999999999784899999999
Q ss_pred HHH
Q ss_conf 999
Q gi|254780567|r 217 DKM 219 (246)
Q Consensus 217 ~~L 219 (246)
++|
T Consensus 168 eKL 170 (172)
T pfam06144 168 EKL 170 (172)
T ss_pred HHH
T ss_conf 976
No 225
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.67 E-value=0.021 Score=34.71 Aligned_cols=111 Identities=18% Similarity=0.218 Sum_probs=58.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCC----------HHHHHH---HHH------------HHHHH-------------
Q ss_conf 8499987877786889999998627620----------135676---444------------54666-------------
Q gi|254780567|r 65 RVVILVGPSGSGKSCLANIWSDKSRSTR----------FSNIAK---SLD------------SILID------------- 106 (246)
Q Consensus 65 ~~l~i~G~~GsGKTHLl~a~~~~~~~~~----------~~~~~~---~~~------------~~~~~------------- 106 (246)
..+.|.|+.|+||.-|+..++..--... ..+... ... ...++
T Consensus 25 HA~L~~G~~G~Gk~~la~~~a~~llC~~~~~~~~Cg~C~~C~l~~~~~HPD~~~i~pe~~~~~I~IdqIR~l~~~~~~~~ 104 (334)
T PRK07993 25 HALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLYEHA 104 (334)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 46754799998899999999999818999999999999789998668999847753422345599999999999984366
Q ss_pred ---HHHHHHHHHHHCCCCC-CHHHHHHHHHHHCCC--CCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHH
Q ss_conf ---6665334332100376-103354555431123--4215640354320022345667885212224507889789999
Q gi|254780567|r 107 ---TRKPVLLEDIDLLDFN-DTQLFHIINSIHQYD--SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 (246)
Q Consensus 107 ---~~~~i~iddi~~~~~~-ee~lf~l~n~~~~~~--~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~ 180 (246)
..+++++++.+.++.. ..+|+-++ .+-. ..+++++. .|.. .+|-.+||+. .+.+.+|+++....
T Consensus 105 ~~g~~kV~iI~~Ae~mn~~AaNaLLKtL---EEPp~~t~~iL~t~-~~~~---lLpTI~SRCq---~~~~~~~~~~~~~~ 174 (334)
T PRK07993 105 RLGGAKVVWLPDAALLTDAAANALLKTL---EEPPEKTWFFLACR-EPAR---LLATLRSRCR---LHYLAPPPEQYALT 174 (334)
T ss_pred CCCCCEEEEECCHHHHCHHHHHHHHHHH---CCCCCCEEEEEECC-CHHH---CCCHHHHHCC---CCCCCCCCHHHHHH
T ss_conf 5699479997667775999999999861---27998849998669-8565---7238875230---41589979999999
Q ss_pred HHHHH
Q ss_conf 99998
Q gi|254780567|r 181 VIVKM 185 (246)
Q Consensus 181 il~k~ 185 (246)
.|.+.
T Consensus 175 wL~~~ 179 (334)
T PRK07993 175 WLSRE 179 (334)
T ss_pred HHHHH
T ss_conf 99873
No 226
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit; InterPro: IPR012804 Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in Salmonella typhimurium) , . The corresponding cobalt chelatases are not homologous. Cobaltochelatase is responsible for the insertion of cobalt into the corrin ring of coenzyme B12 during its biosynthesis. Two versions have been well described. CbiK/CbiX is a monomeric, anaerobic version which acts early in the biosynthesis (IPR010388 from INTERPRO). CobNST is a trimeric, ATP-dependent, aerobic version which acts late in the biosynthesis, (IPR011953 from INTERPRO, IPR006537 from INTERPRO, IPR006538 from INTERPRO) . The two pathways differ in the point of cobalt insertion during corrin ring formation . There are apparently a number of variations on these two pathways, where the major differences seem to be concerned with the process of ring contraction . Cobaltochelatase shows similarities with magnesium chelatase, which is also a complex ATP-dependent enzyme made up of two separable components. However, unlike the situation in cobaltochelatase, one of these two components is membrane bound in magnesium chelatase . .
Probab=96.61 E-value=0.052 Score=32.25 Aligned_cols=188 Identities=16% Similarity=0.137 Sum_probs=108.8
Q ss_pred EECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHH-------------------------HHCCCCHHHHH-
Q ss_conf 6536189999999851016788499987877786889999998-------------------------62762013567-
Q gi|254780567|r 44 LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD-------------------------KSRSTRFSNIA- 97 (246)
Q Consensus 44 iv~~~N~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~-------------------------~~~~~~~~~~~- 97 (246)
|||. -.+=.++|-...+=.-+.+.|-|++|+|||..++++.. ++...+-...+
T Consensus 6 iVGQ-e~LK~ALLL~Av~P~iGGVLirG~KGTAKSTaaR~L~~LLP~i~~v~gC~f~cdP~~P~~~C~~C~~~~~~~G~~ 84 (688)
T TIGR02442 6 IVGQ-EDLKLALLLNAVNPRIGGVLIRGEKGTAKSTAARGLAALLPDIDVVAGCPFSCDPDDPEEWCEECRRKLEEQGTL 84 (688)
T ss_pred CCCH-HHHHHHHHHEEECCCCCEEEEECCCCCHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCC
T ss_conf 2142-798653210025266370788778886278988848761602366404788877788704006767555204775
Q ss_pred -------------HHHHHH-H-----------------------HHHHHHHHHHHHHCCCCCCHHHHHHHHHH-------
Q ss_conf -------------644454-6-----------------------66666533433210037610335455543-------
Q gi|254780567|r 98 -------------KSLDSI-L-----------------------IDTRKPVLLEDIDLLDFNDTQLFHIINSI------- 133 (246)
Q Consensus 98 -------------~~~~~~-~-----------------------~~~~~~i~iddi~~~~~~ee~lf~l~n~~------- 133 (246)
.....+ . .....++-||.|++++- |+.|-+
T Consensus 85 ~~~~~~~~~V~LPlgATEDRVvG~LDi~~al~~G~~~FqPGLLA~AhrGiLYiDEVNLLdD------hlVD~lLDaaA~G 158 (688)
T TIGR02442 85 PSEQRPVPFVNLPLGATEDRVVGSLDIERALKEGEKAFQPGLLAEAHRGILYIDEVNLLDD------HLVDVLLDAAAMG 158 (688)
T ss_pred CCCCCCCEEEECCCCCCHHHHCCHHHHHHHHHHCHHHHCCCCHHHHCCCEEEEEEECCCCC------HHHHHHHHHHHCC
T ss_conf 3135873588658775233221305489998718566078861754687167852001441------4778999987648
Q ss_pred ----H------CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHH-HC-------------
Q ss_conf ----1------12342156403543200223456678852122245078897899999999866-62-------------
Q gi|254780567|r 134 ----H------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA-DR------------- 189 (246)
Q Consensus 134 ----~------~~~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~-~r------------- 189 (246)
- .+-...++.++.+|.+-. ..|.|.=||.-++-+. .+-|-+.|..|+++-.. ++
T Consensus 159 ~n~VEREG~S~~Hparf~L~GTMNPEEG~-LRPQLLDRFGL~V~v~-~~~d~~~R~Ev~~Rrl~~d~dP~~F~~~~~~~~ 236 (688)
T TIGR02442 159 VNRVEREGLSVSHPARFVLIGTMNPEEGD-LRPQLLDRFGLCVDVA-ASRDPEERVEVIRRRLAFDADPEAFAARWAAEQ 236 (688)
T ss_pred CEEEEECCCCHHCHHHHHHHCCCCCCHHH-HCHHHHHHHHCEEEEC-CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 00676357430011455322037852211-0223242440115502-435866899999999754026778899999999
Q ss_pred ---------------CCCCCHHHHHHHHHCCC----CCHHHHHHHHHHH-HHHHHHHCCCCCHHHHHHHHH
Q ss_conf ---------------89798899999994066----7989999999999-999998477878899999998
Q gi|254780567|r 190 ---------------QIFIDKKLAAYIVQRME----RSLVFAEKLVDKM-DNLALSRGMGITRSLAAEVLK 240 (246)
Q Consensus 190 ---------------~i~l~~~v~~yl~~r~~----Rs~~~l~~~l~~L-d~~sl~~kr~ITi~lvk~vL~ 240 (246)
++.|+++++.||+.=-. ..+++=+-++..= -..|+.-.+.||..-|+++.+
T Consensus 237 ~~L~~~I~~AR~lLp~V~l~d~~~~~I~~lc~~~~V~GhRAdi~~~raArAlAAl~GR~~V~~eDv~~Aa~ 307 (688)
T TIGR02442 237 EELRERIAAARSLLPSVRLSDSLLRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVTAEDVREAAE 307 (688)
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHH
T ss_conf 99999999999754776588899999999999728885259999999999998772885353778999998
No 227
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein; InterPro: IPR005670 This is a family of phosphate transport system permease proteins.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0015114 phosphate transmembrane transporter activity, 0006817 phosphate transport, 0016020 membrane.
Probab=96.59 E-value=0.0012 Score=42.24 Aligned_cols=25 Identities=40% Similarity=0.612 Sum_probs=20.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 7884999878777868899999986
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.+..--|-||||||||.||+++-.-
T Consensus 26 ~n~vTAlIGPSGCGKSTlLR~lNRM 50 (248)
T TIGR00972 26 KNQVTALIGPSGCGKSTLLRSLNRM 50 (248)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 7705898778898678999998877
No 228
>TIGR00455 apsK adenylylsulfate kinase; InterPro: IPR002891 Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulphate. This domain contains an ATP binding P-loop motif .; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity transferring phosphorus-containing groups, 0000103 sulfate assimilation.
Probab=96.59 E-value=0.0017 Score=41.40 Aligned_cols=97 Identities=18% Similarity=0.194 Sum_probs=54.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHC
Q ss_conf 7884999878777868899999986276201356764445466666653343321003761-------033545554311
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND-------TQLFHIINSIHQ 135 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iddi~~~~~~e-------e~lf~l~n~~~~ 135 (246)
.+-.|+|.|+||||||.|++|+.++-....+....+.-++.-. -..-|+-+-..+. -+.-++ ..
T Consensus 18 ~g~vlWlTGLSGsGKsTiA~Al~~~L~~~G~~~~~LDGDnvR~-----gL~~dLGFS~~DR~eNIRRigEVa~L----~~ 88 (187)
T TIGR00455 18 RGVVLWLTGLSGSGKSTIANALEKKLEKKGYRVYVLDGDNVRH-----GLNKDLGFSEEDRKENIRRIGEVAKL----LV 88 (187)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCCEEEC-----CCCCCCCCCHHHHCCCCCEEHHHHHH----HH
T ss_conf 7389851168856357999999999996697499975863424-----77888888856705688353264677----76
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHC--CEEEE
Q ss_conf 234215640354320022345667885212--22450
Q gi|254780567|r 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAA--TVVKI 170 (246)
Q Consensus 136 ~~~~iilts~~~p~~~~~~l~DL~SRl~~g--~~~~I 170 (246)
.++.|++||=-+|-.- ....-+.++..| -.+||
T Consensus 89 ~~G~i~ltsfISPyR~--~R~~vR~~~~~~Gl~F~Ev 123 (187)
T TIGR00455 89 RNGVIVLTSFISPYRA--DRQMVRELIEEGGLEFIEV 123 (187)
T ss_pred HCCEEEEEEEECCCHH--HHHHHHHHHHCCCEEEEEE
T ss_conf 4793899842177666--7899988754057368997
No 229
>KOG2543 consensus
Probab=96.59 E-value=0.017 Score=35.22 Aligned_cols=149 Identities=14% Similarity=0.144 Sum_probs=74.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHC--CCCHHHHHHHHHH----------------------------HHH---HH----
Q ss_conf 8499987877786889999998627--6201356764445----------------------------466---66----
Q gi|254780567|r 65 RVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDS----------------------------ILI---DT---- 107 (246)
Q Consensus 65 ~~l~i~G~~GsGKTHLl~a~~~~~~--~~~~~~~~~~~~~----------------------------~~~---~~---- 107 (246)
..++|||.+|+|||.+++..-++.+ .++.......... .++ ..
T Consensus 31 S~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~ 110 (438)
T KOG2543 31 SIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAA 110 (438)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 15799614787455999999860378630541577516799999999873567874055542799999999999844776
Q ss_pred -----HHHHHHHHHHCCCCCCH----HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHH--HHCCEEEECCCCHH
Q ss_conf -----66533433210037610----33545554311234215640354320022345667885--21222450788978
Q gi|254780567|r 108 -----RKPVLLEDIDLLDFNDT----QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL--KAATVVKISLPDDD 176 (246)
Q Consensus 108 -----~~~i~iddi~~~~~~ee----~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl--~~g~~~~I~~pdde 176 (246)
.-.+++|.++.+..-.. .+|.+...+......+++++...|.... +|. ....++.++.++.+
T Consensus 111 t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~~y~-------~n~g~~~i~~l~fP~Ys~~ 183 (438)
T KOG2543 111 TNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEKQYL-------INTGTLEIVVLHFPQYSVE 183 (438)
T ss_pred HCCCCEEEEEECCHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHH-------CCCCCCCCEEEECCCCCHH
T ss_conf 446744999974777663065078899998998737773699983266677752-------1467778647853877889
Q ss_pred HHHHHHHHHHH-HCCCCCCHHHHHHHHH---CCCCCHHHHHHHHHHHH
Q ss_conf 99999999866-6289798899999994---06679899999999999
Q gi|254780567|r 177 FLEKVIVKMFA-DRQIFIDKKLAAYIVQ---RMERSLVFAEKLVDKMD 220 (246)
Q Consensus 177 ~~~~il~k~~~-~r~i~l~~~v~~yl~~---r~~Rs~~~l~~~l~~Ld 220 (246)
+...|+.+-.- +|...+=-.-++.+++ +..|++.++..++....
T Consensus 184 e~~~Il~~~~p~~r~~~~ya~fl~v~l~vF~~~crd~~eL~~~~~~~w 231 (438)
T KOG2543 184 ETQVILSRDNPGKRKLDVYAQFLHVLLQVFYMACRDVNELRSLISLAW 231 (438)
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 999998417831000689999999999999999678999999999987
No 230
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.59 E-value=0.01 Score=36.62 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=28.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 8849998787778688999999862762013567
Q gi|254780567|r 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIA 97 (246)
Q Consensus 64 ~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~ 97 (246)
...++|.|..|+|||.+.+.+++.-+-.+++...
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~ 35 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQ 35 (172)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCHH
T ss_conf 9618997179997768999999981998022469
No 231
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=96.56 E-value=0.0019 Score=41.09 Aligned_cols=34 Identities=29% Similarity=0.468 Sum_probs=28.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 8849998787778688999999862762013567
Q gi|254780567|r 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIA 97 (246)
Q Consensus 64 ~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~ 97 (246)
.+.++|.||.|||||.|+..+|++.++..+++..
T Consensus 4 ~~ii~i~GpTasGKs~la~~la~~~~~eIIsaDS 37 (304)
T PRK00091 4 PKLIVLVGPTASGKTALAIELAKRLNGEIISVDS 37 (304)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEECH
T ss_conf 9779998988658999999999987998994126
No 232
>PRK04132 replication factor C small subunit; Provisional
Probab=96.55 E-value=0.056 Score=32.07 Aligned_cols=102 Identities=11% Similarity=0.002 Sum_probs=76.9
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCC
Q ss_conf 54555431123421564035432002234566788521222450788978999999998666289798899999994066
Q gi|254780567|r 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206 (246)
Q Consensus 127 f~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~ 206 (246)
..-..+...++.+.+++|+...+ +.|-+.||+. ++...|+.++....-++..+...++.++++.++-|..-.+
T Consensus 665 ~~r~~~~~~~~~~~~~SCNYsSK----IIePIQSRCa---vFRF~PL~~e~v~~RL~~Ia~~Egv~itedGleAI~~~ae 737 (863)
T PRK04132 665 TCHNDHSFIANGFVSHNCNYSSK----IIEPIQSRCA---IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYVAE 737 (863)
T ss_pred HHHHHHHHHCCCEEEEECCCCCC----CCCHHHCCEE---EEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC
T ss_conf 98778764205617986676040----7416655624---7883689999999999999997499767789999999756
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 798999999999999999847787889999999
Q gi|254780567|r 207 RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 (246)
Q Consensus 207 Rs~~~l~~~l~~Ld~~sl~~kr~ITi~lvk~vL 239 (246)
.|++.+.+++. ..+.. ...||-..|-++.
T Consensus 738 GDMRkAIN~LQ---saa~~-~~~Vt~d~Vy~v~ 766 (863)
T PRK04132 738 GDMRRAINVLQ---AAAAL-DTKITDENVFKVA 766 (863)
T ss_pred CCHHHHHHHHH---HHHHC-CCCCCHHHHHHHC
T ss_conf 74899999999---99861-6987888999970
No 233
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.55 E-value=0.0024 Score=40.50 Aligned_cols=25 Identities=36% Similarity=0.575 Sum_probs=22.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 6788499987877786889999998
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSD 86 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~ 86 (246)
.++.++-|-||+|||||.|+++++-
T Consensus 27 ~~GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 27 EKGEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 7997999989997889999999968
No 234
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.55 E-value=0.013 Score=35.88 Aligned_cols=112 Identities=13% Similarity=0.164 Sum_probs=56.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHCCCCCE
Q ss_conf 99987877786889999998627620135676444546666665334332100376------103354555431123421
Q gi|254780567|r 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN------DTQLFHIINSIHQYDSSL 140 (246)
Q Consensus 67 l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iddi~~~~~~------ee~lf~l~n~~~~~~~~i 140 (246)
++|.|.+|||||++.+++++..+..+++....- .. ..-.-+.++-...|. |... +..+......+
T Consensus 2 I~LiG~~G~GKstigk~la~~l~~~fiD~D~~I-e~-----~~g~si~eif~~~Ge~~FR~~E~~~---l~~~~~~~~~V 72 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELI-EQ-----RAGMSIPEIFAEEGEEGFRELEREV---LLLLLTKENAV 72 (154)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEECCHHH-HH-----HHCCCHHHHHHHCCHHHHHHHHHHH---HHHHHCCCCEE
T ss_conf 899889999889999999999798979685999-99-----9499999999874938789999999---99985689859
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 56403543200223456678852122245078897899999999866628979
Q gi|254780567|r 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193 (246)
Q Consensus 141 ilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l 193 (246)
|-++...|..-.. ..-| ...|.++-|..+-+.....+-. -..|.+..
T Consensus 73 Is~GGG~v~~~~~-~~~l---~~~~~vI~L~~~~~~l~~Rl~~--~~~RPll~ 119 (154)
T cd00464 73 IATGGGAVLREEN-RRLL---LENGIVVWLDASPEELLERLAR--DKTRPLLQ 119 (154)
T ss_pred EECCCCCCCCHHH-HHHH---HHCCEEEEEECCHHHHHHHHHC--CCCCCCCC
T ss_conf 9738973368999-9999---9579089995799999999607--99999888
No 235
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.54 E-value=0.0023 Score=40.60 Aligned_cols=25 Identities=44% Similarity=0.618 Sum_probs=22.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 6788499987877786889999998
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSD 86 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~ 86 (246)
.++..+.|.||+|||||.|++.++-
T Consensus 24 ~~Ge~~~ivGpSGsGKSTLL~~i~g 48 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINL 48 (213)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 8998999999998449999999981
No 236
>TIGR00390 hslU heat shock protein HslVU, ATPase subunit HslU; InterPro: IPR004491 This family of proteins represent HslU, a bacterial clpX homolog, which is an ATPase and chaperone belonging to the AAA Clp/Hsp100 family and a component of the eubacterial proteasome. ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, ClpXP) complex in other eubacteria. Genes homologous to eubacterial HslV, IPR001353 from INTERPRO, (ClpQ,) and HslU (ClpY, ClpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa. They are expressed as precursors, with a propeptide that is removed to produce the active protease. The protease is probably located in the kinetoplast (mitochondrion). Phylogenetic analysis shows that HslV and HslU from trypanosomatids form a single clad with other eubacterial homologs . ; GO: 0005515 protein binding, 0005524 ATP binding, 0009377 HslUV protease activity, 0016887 ATPase activity, 0005737 cytoplasm, 0009376 HslUV protease complex.
Probab=96.53 E-value=0.0042 Score=38.98 Aligned_cols=197 Identities=13% Similarity=0.167 Sum_probs=98.1
Q ss_pred CCCCCEEECCCHH---HHHHHHHHHHCC-----------CCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH-
Q ss_conf 8845416536189---999999851016-----------7884999878777868899999986276201356764445-
Q gi|254780567|r 38 ISRDDLLVHSAIE---QAVRLIDSWPSW-----------PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS- 102 (246)
Q Consensus 38 ~~~dnFiv~~~N~---~A~~~i~~~~~~-----------~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~- 102 (246)
..+|.||||..|. .|+++-++|-.. |-| ++--||.|+|||=+++-+++-.++=|+.--+.-+..
T Consensus 8 ~~LD~yIiGQ~~AKk~VAiALrNRyrR~~L~~~L~~EV~PKN-ILMiGpTGVGKTEIARRlAKL~~aPFiKVEAtKfTEV 86 (463)
T TIGR00390 8 AELDKYIIGQDEAKKAVAIALRNRYRRSQLEEELKDEVTPKN-ILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEV 86 (463)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-EEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEEEEC
T ss_conf 751442206366788999998866776128711135658743-0432788985447999999984489146664100110
Q ss_pred -----------HHH--HHHHHHHHHHHHCCCC-----CCHHHHH-HHHHHHCC----CCCEEEEECCCCCCH---HHHHH
Q ss_conf -----------466--6666533433210037-----6103354-55543112----342156403543200---22345
Q gi|254780567|r 103 -----------ILI--DTRKPVLLEDIDLLDF-----NDTQLFH-IINSIHQY----DSSLLMTARTFPVSW---GVCLP 156 (246)
Q Consensus 103 -----------~~~--~~~~~i~iddi~~~~~-----~ee~lf~-l~n~~~~~----~~~iilts~~~p~~~---~~~l~ 156 (246)
-++ .+...+--+....... .+|.+.. |+--.... +-.-.+-....|+.. .....
T Consensus 87 GYVGrdVeSmvRDL~~~aV~lV~~e~~~~~r~~aee~~~erI~~~L~pp~~n~sGvknPfe~f~~~~ePN~~~e~~~~~~ 166 (463)
T TIGR00390 87 GYVGRDVESMVRDLVDTAVKLVKEEKIEKVRDRAEEAAEERIVDKLLPPAKNQSGVKNPFEMFWGSEEPNEKDEEESSRE 166 (463)
T ss_pred CEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHEECCCCCCHHHHHHHHHH
T ss_conf 21424100367878999999999988998899999999889998728889887766672230005668740246899999
Q ss_pred HHHHHHHH--CCEEEECCCCHHHHHHHHHHHH--HHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 66788521--2224507889789999999986--6628979889999999406679899999999999999984778788
Q gi|254780567|r 157 DLCSRLKA--ATVVKISLPDDDFLEKVIVKMF--ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232 (246)
Q Consensus 157 DL~SRl~~--g~~~~I~~pdde~~~~il~k~~--~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~ITi 232 (246)
-++-|++. .....+..+||.....=+.... ..=.+..|++.-+-= ..+.+++..+-. --..+|+.++
T Consensus 167 ~~~~klr~r~ahqlalGeLDd~~iei~v~~~~pf~~~e~~~pp~~e~~~--------~~l~~~l~~l~~-~~kkkr~l~i 237 (463)
T TIGR00390 167 ALRKKLRERMAHQLALGELDDKEIEIEVSAKSPFSGIEILAPPGMEEMT--------MNLQSLLQNLGP-DKKKKRKLKI 237 (463)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEECCCCCCHHHHH--------HHHHHHHHHHCC-CCCEECCCCH
T ss_conf 9999999987766303664671589986137871267505888556776--------789999862045-3200011456
Q ss_pred HHHHHHHHHHHC
Q ss_conf 999999986741
Q gi|254780567|r 233 SLAAEVLKETQQ 244 (246)
Q Consensus 233 ~lvk~vL~~~~~ 244 (246)
.-|+++|.+-+.
T Consensus 238 k~A~~~L~~Ee~ 249 (463)
T TIGR00390 238 KEAKKALIAEEA 249 (463)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999899988
No 237
>TIGR00368 TIGR00368 Mg chelatase homolog; InterPro: IPR004482 This family of bacterial proteins are variously described as 'hypothetical protein yifB', 'competence protein', 'hypothetical protein' or 'Mg chelatase-related protein'. These proteins are a subset of the magnesium chelatase, ChlI subunit family and either belong to or show significant homology to the non-peptidase homologs of the MEROPS peptidase family S16 (lon protease family, clan SF), IPR001984 from INTERPRO. .
Probab=96.53 E-value=0.003 Score=39.84 Aligned_cols=58 Identities=22% Similarity=0.383 Sum_probs=39.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 34810341558887766884541653618999999985101678849998787778688999
Q gi|254780567|r 21 PKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 (246)
Q Consensus 21 ~~~~~~Ql~l~~~~~~~~~~dnFiv~~~N~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~ 82 (246)
+.+...|-..++...-.|++.|-+ |. +.|..+++=..-+ +..|++.||||||||=|+.
T Consensus 174 ~t~~~~~~~~~~s~~~~~DL~dv~-GQ--~~akRAleIAaAG-GHNlll~GPPGsGKTmla~ 231 (505)
T TIGR00368 174 RTNTKAKSIINVSLIIDLDLKDVK-GQ--QHAKRALEIAAAG-GHNLLLLGPPGSGKTMLAS 231 (505)
T ss_pred CCCCCCCHHHHHCCHHHCCCCCCC-CH--HHCCHHHHHHHHC-CCCEEEECCCCCCHHHHHH
T ss_conf 545553103441320104432254-51--0110267775313-5643767824962689998
No 238
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.52 E-value=0.0024 Score=40.43 Aligned_cols=25 Identities=32% Similarity=0.587 Sum_probs=22.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 7884999878777868899999986
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
++..+.|.||+|||||.|+++++--
T Consensus 25 ~Ge~~~i~GpSG~GKSTlLr~iaGl 49 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 9989999999988099999999769
No 239
>pfam03266 DUF265 Protein of unknown function, DUF265.
Probab=96.52 E-value=0.0037 Score=39.29 Aligned_cols=21 Identities=29% Similarity=0.586 Sum_probs=17.7
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 999878777868899999986
Q gi|254780567|r 67 VILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 67 l~i~G~~GsGKTHLl~a~~~~ 87 (246)
++|.|++|+|||+|++-+++.
T Consensus 2 i~ITG~pGvGKTTli~kv~~~ 22 (168)
T pfam03266 2 IFITGPPGVGKTTLVKKVIEL 22 (168)
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 899789998899999999999
No 240
>TIGR00678 holB DNA polymerase III, delta' subunit; InterPro: IPR004622 DNA-directed DNA polymerase (2.7.7.7 from EC) catalyzes DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. DNA polymerase III is a complex, multi-chain enzyme responsible for most of the replicative synthesis in bacteria. The enzyme also has 3' to 5' exonuclease activity. It has a core composed of alpha, epsilon and theta chains, that associate with a tau subunit which allows the core dimerisation to form the PolIII' complex. PolIII' associates with the gamma complex (gamma, delta, delta', psi and chi chains) and with the beta chain. This domain is the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tightly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classified as delta'. The noise cut-off is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits.; GO: 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication.
Probab=96.50 E-value=0.0054 Score=38.29 Aligned_cols=134 Identities=16% Similarity=0.250 Sum_probs=75.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCC---------------------------------------------------
Q ss_conf 78849998787778688999999862762---------------------------------------------------
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDKSRST--------------------------------------------------- 91 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~~~~~--------------------------------------------------- 91 (246)
-.+.+.++||.|+||.-++..+++..-..
T Consensus 13 ~~HA~LF~G~~G~Gk~~~A~~~A~~l~C~~~~~~~~Cg~C~~C~~~~~G~HPD~~~~~P~~~~~~~~~de~~~~~~g~a~ 92 (216)
T TIGR00678 13 LAHAYLFTGPEGVGKELLALALAKALLCEPRGGGEPCGECHSCRLIEAGNHPDLHRLEPEGQSKSLTADEAAEGEEGSAK 92 (216)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCC
T ss_conf 88612544488874899999999998077857788888588899987079982378742347777776458976256421
Q ss_pred -------CHHHHHHH----HHHHHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHCCCC-C-EEEEECCC-CCCHHHHHH
Q ss_conf -------01356764----44546666665334332100376-1033545554311234-2-15640354-320022345
Q gi|254780567|r 92 -------RFSNIAKS----LDSILIDTRKPVLLEDIDLLDFN-DTQLFHIINSIHQYDS-S-LLMTARTF-PVSWGVCLP 156 (246)
Q Consensus 92 -------~~~~~~~~----~~~~~~~~~~~i~iddi~~~~~~-ee~lf~l~n~~~~~~~-~-iilts~~~-p~~~~~~l~ 156 (246)
.+...-.- ........+++++|++.+.++-. -..|+-++ .|=.. . +||.|..+ |..+ +|
T Consensus 93 ~~~~~~Ik~dq~R~l~~~~~~~~~~~~~rVviI~~Ae~mn~~AANALLKtL---EEPp~~t~fiL~~~~~DP~~l---Lp 166 (216)
T TIGR00678 93 RRALPQIKVDQVRELVEFLSLTPQESGRRVVIIEDAERMNEAAANALLKTL---EEPPPNTLFILITHSPDPERL---LP 166 (216)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHCCHHHHHHHHHHE---ECCCCCEEEEEECCCCCHHHH---CC
T ss_conf 136787872789999999860642147517997673232589898651010---127987079885088884332---21
Q ss_pred HHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCC
Q ss_conf 6678852122245078897899999999866628979889999999406679
Q gi|254780567|r 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 (246)
Q Consensus 157 DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs 208 (246)
-++||+. ++.+.+|+.+....+|.......+. ++....++.-...+
T Consensus 167 TI~SRCq---~~~f~~l~~~~~~~~L~~~g~~~~~---~~~a~~~~~~~~G~ 212 (216)
T TIGR00678 167 TIRSRCQ---VLPFPPLSEEALLQWLIEQGISENV---PEAAELLLALAGGS 212 (216)
T ss_pred CCCCCEE---EEEECCCCHHHHHHHHHHCCCCCCC---HHHHHHHHHHHCCC
T ss_conf 1103201---5862599889999999970878780---68999999984685
No 241
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.50 E-value=0.0066 Score=37.75 Aligned_cols=114 Identities=15% Similarity=0.133 Sum_probs=55.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCHHH---HHHHH--HHHHHHHHHHHH-------HHHHHCCCCCCH------HHHH
Q ss_conf 99987877786889999998627620135---67644--454666666533-------433210037610------3354
Q gi|254780567|r 67 VILVGPSGSGKSCLANIWSDKSRSTRFSN---IAKSL--DSILIDTRKPVL-------LEDIDLLDFNDT------QLFH 128 (246)
Q Consensus 67 l~i~G~~GsGKTHLl~a~~~~~~~~~~~~---~~~~~--~~~~~~~~~~i~-------iddi~~~~~~ee------~lf~ 128 (246)
++|.||+|+|||.|++.+++.....+... .+-.. .......+.++. +++-.++.+++- ....
T Consensus 2 ivi~GPSG~GK~tl~~~L~~~~~~~~~~~vs~TTR~~r~~E~~G~dY~Fvs~~~F~~~i~~g~f~E~~~~~g~~YGt~~~ 81 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLEWAEFHGNYYGTSKA 81 (137)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCEEEEECHHHHHHHHHCCEEEEEEEECCCCCCCCHH
T ss_conf 99999998899999999985198776875660378998887789678986799999998669149999998806627899
Q ss_pred HHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHH
Q ss_conf 5554311234215640354320022345667885212224507889789999999986
Q gi|254780567|r 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 (246)
Q Consensus 129 l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~ 186 (246)
.+......|+.+++.-+.. . ...|+.-.--..++-|.|||.+....-+.+..
T Consensus 82 ~I~~~~~~G~~vil~id~~-----g-~~~lk~~~~~~~~IFI~PP~~~i~~~~~~~~~ 133 (137)
T cd00071 82 AVEEALAEGKIVILEIDVQ-----G-ARQVKKSYPDAVSIFILPPDYVIVNDDLEKAY 133 (137)
T ss_pred HHHHHHHCCCEEEEEEEHH-----H-HHHHHHCCCCEEEEEEECCCHHHHHHHHHHHH
T ss_conf 9999996399499997489-----9-99999709981999997909689999999998
No 242
>PRK07261 topology modulation protein; Provisional
Probab=96.48 E-value=0.025 Score=34.16 Aligned_cols=112 Identities=16% Similarity=0.264 Sum_probs=64.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHCCCCCEEE
Q ss_conf 99987877786889999998627620135676444546666665334332100376----10335455543112342156
Q gi|254780567|r 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN----DTQLFHIINSIHQYDSSLLM 142 (246)
Q Consensus 67 l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iddi~~~~~~----ee~lf~l~n~~~~~~~~iil 142 (246)
+.|.|.+|||||+|++.++...+--++ -+|.+.-.+++ .+++...+..+.... .-|+
T Consensus 3 I~IiG~sGsGKSTlAr~L~~~~~ip~~------------------~LD~l~w~p~w~~~~~~e~~~~~~~~~~~~-~WIi 63 (171)
T PRK07261 3 IAIIGYSGSGKSTLARFLGQHYNCPVL------------------HLDQLHFSSNWQERDDDDMIADISNFLLKQ-DWII 63 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEE------------------EECCEEECCCCEECCHHHHHHHHHHHHHCC-CEEE
T ss_conf 999889998689999999998797979------------------702278889998888999999999998489-8799
Q ss_pred EECCCCCCHHHHHHHHHHHH-HHCCEEEECCCCHHHHHHHHHHHHHHCCCC-----------CCHHHHHHHHHC
Q ss_conf 40354320022345667885-212224507889789999999986662897-----------988999999940
Q gi|254780567|r 143 TARTFPVSWGVCLPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIF-----------IDKKLAAYIVQR 204 (246)
Q Consensus 143 ts~~~p~~~~~~l~DL~SRl-~~g~~~~I~~pdde~~~~il~k~~~~r~i~-----------l~~~v~~yl~~r 204 (246)
-++....-.. -|+ .+-+++=+.-|-.-.+..++.+....++-. ++-+-+.|++..
T Consensus 64 DGny~~~~~~-------~rl~~aD~iI~Ld~p~~~~l~rvikR~l~~~~~~r~~m~~g~~E~~~~~fl~wi~~~ 130 (171)
T PRK07261 64 EGNYSNCLYE-------ERMAEADQIIFLNFSRFNCLYRAFKRYLKYRGKTRPSMAENCPEKFDVEFVKWILLD 130 (171)
T ss_pred ECCCCCHHHH-------HHHHHCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 4785124777-------679779999998584999999999999998277587657899341029999999734
No 243
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.48 E-value=0.019 Score=34.94 Aligned_cols=29 Identities=17% Similarity=0.276 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHCCEEEECCCCHHHHHHHHHH
Q ss_conf 23456678852122245078897899999999
Q gi|254780567|r 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 (246)
Q Consensus 153 ~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k 184 (246)
-.+|-++||+. .+.+.+|+.+.....|..
T Consensus 174 ~llpTI~SRcq---~~~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 174 RLLPTILSRCR---QWPMTVPAPEAAAAWLAA 202 (342)
T ss_pred HCCHHHHHCCE---EECCCCCCHHHHHHHHHH
T ss_conf 48368876764---302899599999999987
No 244
>PHA02244 ATPase-like protein
Probab=96.46 E-value=0.0028 Score=40.07 Aligned_cols=30 Identities=27% Similarity=0.292 Sum_probs=24.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 788499987877786889999998627620
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTR 92 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~ 92 (246)
.+-|+|+||+.||||||.++-+++.-+--+
T Consensus 118 ~nipV~L~G~AGsGKt~~A~qIA~aLdl~F 147 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEALDLDF 147 (383)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 598569975888863489999999858882
No 245
>KOG3354 consensus
Probab=96.44 E-value=0.014 Score=35.77 Aligned_cols=89 Identities=15% Similarity=0.192 Sum_probs=49.4
Q ss_pred CCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCE
Q ss_conf 6788-499987877786889999998627620135676444546666665334332100376103354555431123421
Q gi|254780567|r 62 WPSR-VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140 (246)
Q Consensus 62 ~~~~-~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iddi~~~~~~ee~lf~l~n~~~~~~~~i 140 (246)
.|.+ .+++-|.+|||||....+++++.+..|+...+.........-.+-+-+.|.+.+.|-+ .+-...-.....+..+
T Consensus 9 ~~~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~NveKM~~GipLnD~DR~pWL~-~i~~~~~~~l~~~q~v 87 (191)
T KOG3354 9 GPFKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPANVEKMTQGIPLNDDDRWPWLK-KIAVELRKALASGQGV 87 (191)
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHH-HHHHHHHHHHHCCCEE
T ss_conf 777605999835887744599999998588624555579878899883699888532117999-9999999876327818
Q ss_pred EEEECCCCCCH
Q ss_conf 56403543200
Q gi|254780567|r 141 LMTARTFPVSW 151 (246)
Q Consensus 141 ilts~~~p~~~ 151 (246)
|++|+.--...
T Consensus 88 VlACSaLKk~Y 98 (191)
T KOG3354 88 VLACSALKKKY 98 (191)
T ss_pred EEEHHHHHHHH
T ss_conf 99728888999
No 246
>PRK05629 hypothetical protein; Validated
Probab=96.42 E-value=0.027 Score=34.04 Aligned_cols=77 Identities=10% Similarity=0.043 Sum_probs=66.1
Q ss_pred HHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 21222450788978999999998666289798899999994066798999999999999999847787889999999867
Q gi|254780567|r 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 (246)
Q Consensus 163 ~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~ITi~lvk~vL~~~ 242 (246)
+.|.+++.+++.+..+..-+...+...|..++++++++|+.++-.+++.+.+.+++|- ...+..||...|.++....
T Consensus 128 k~g~v~e~~~l~~~~l~~wi~~~~~~~g~~i~~~A~~~L~~~~G~DL~~l~~El~KL~---~~~~g~It~e~V~~~~~~~ 204 (331)
T PRK05629 128 KVAVVHDAAKLKDRDRPGWVKQEFKNHKVQVTPDVIHALLEGVGSDLRELASAVSQLV---EDTQGNVTVEKVRAYYVGV 204 (331)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH---CCCCCCCCHHHHHHHHCCC
T ss_conf 0746986688999999999999999869997999999999996804999999999984---0779985899999982697
No 247
>KOG0478 consensus
Probab=96.41 E-value=0.041 Score=32.86 Aligned_cols=110 Identities=17% Similarity=0.247 Sum_probs=55.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHC-CCCHHHH---HHHH-----------------HHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 499987877786889999998627-6201356---7644-----------------454666666533433210037610
Q gi|254780567|r 66 VVILVGPSGSGKSCLANIWSDKSR-STRFSNI---AKSL-----------------DSILIDTRKPVLLEDIDLLDFNDT 124 (246)
Q Consensus 66 ~l~i~G~~GsGKTHLl~a~~~~~~-~~~~~~~---~~~~-----------------~~~~~~~~~~i~iddi~~~~~~ee 124 (246)
.+.++|.||.|||||||...+-.. +.|.+.. +..+ -...+......|||+++.++....
T Consensus 464 NILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~dStr 543 (804)
T KOG0478 464 NILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMSDSTR 543 (804)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCHHCCEEEEEECCCCCEEEEECCCEEECCCCEEECHHHHHHHHHHH
T ss_conf 28994699867899999999747754040587630220035677657655466504848972896577112333327788
Q ss_pred HHHHHHHH------------HHCCCCCEEEEECC-CCCCHHH---------HHHHHHHHHHHCCEEEECCCCHH
Q ss_conf 33545554------------31123421564035-4320022---------34566788521222450788978
Q gi|254780567|r 125 QLFHIINS------------IHQYDSSLLMTART-FPVSWGV---------CLPDLCSRLKAATVVKISLPDDD 176 (246)
Q Consensus 125 ~lf~l~n~------------~~~~~~~iilts~~-~p~~~~~---------~l~DL~SRl~~g~~~~I~~pdde 176 (246)
..+|-.-. +..+.+.-|++|-. .-++|+. .-|-|.|||-.... -+.+||+.
T Consensus 544 SvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLSRFDLIyl-llD~~DE~ 616 (804)
T KOG0478 544 SVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFL-LLDKPDER 616 (804)
T ss_pred HHHHHHHHHHHHHHHHCCEEEECCCCCEEEEEECCCCCCCCCCCCHHHCCCCCHHHHHHHCEEEE-EECCCCHH
T ss_conf 99999998763117430223421665303445354324579997623216788056432337899-84275326
No 248
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.41 E-value=0.0086 Score=37.05 Aligned_cols=26 Identities=35% Similarity=0.686 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 88499987877786889999998627
Q gi|254780567|r 64 SRVVILVGPSGSGKSCLANIWSDKSR 89 (246)
Q Consensus 64 ~~~l~i~G~~GsGKTHLl~a~~~~~~ 89 (246)
++.++|.||+|+|||.|++++.....
T Consensus 2 G~LivvsgPSGaGK~Tli~~l~~~~~ 27 (184)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQ 27 (184)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 70999989986999999999984489
No 249
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transport system, ATP-binding protein component. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=96.40 E-value=0.003 Score=39.85 Aligned_cols=26 Identities=38% Similarity=0.555 Sum_probs=22.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 67884999878777868899999986
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.++..+.|.||+|||||.|+++++--
T Consensus 28 ~~Ge~~~llGpSG~GKtTlLr~iaGl 53 (353)
T TIGR03265 28 KKGEFVCLLGPSGCGKTTLLRIIAGL 53 (353)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 89999999999953599999999769
No 250
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.39 E-value=0.0035 Score=39.50 Aligned_cols=51 Identities=24% Similarity=0.417 Sum_probs=34.8
Q ss_pred CCCCCCCCEEECCCHHHHHHHHHH--HHCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 766884541653618999999985--10167884999878777868899999986
Q gi|254780567|r 35 CLGISRDDLLVHSAIEQAVRLIDS--WPSWPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 35 ~~~~~~dnFiv~~~N~~A~~~i~~--~~~~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
+..-+++|.-+...... ..+++ ..-.|+..++|-|++|||||.|+++++.-
T Consensus 390 ~~~i~~~nl~l~~p~~~--~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGL 442 (604)
T COG4178 390 DHGITLENLSLRTPDGQ--TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGL 442 (604)
T ss_pred CCEEEEEEEEEECCCCC--EEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 65058854367779987--421465265479987998789998788999999645
No 251
>PRK13946 shikimate kinase; Provisional
Probab=96.34 E-value=0.036 Score=33.21 Aligned_cols=34 Identities=26% Similarity=0.281 Sum_probs=29.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHH
Q ss_conf 7884999878777868899999986276201356
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNI 96 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~ 96 (246)
..+.++|.|..|||||.+.+.+++..+..+++..
T Consensus 19 ~kknIvLIG~mGsGKStvGk~LA~~L~~~fiD~D 52 (195)
T PRK13946 19 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 52 (195)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCCCEEECH
T ss_conf 8995899899999889999999999797989885
No 252
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family; InterPro: IPR006001 This family of proteins includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases (IPR000577 from INTERPRO).; GO: 0016301 kinase activity, 0005975 carbohydrate metabolic process.
Probab=96.34 E-value=0.0041 Score=39.02 Aligned_cols=105 Identities=14% Similarity=0.144 Sum_probs=53.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCC--
Q ss_conf 99987877786889999998627-----62013567644454666666533433210037610335455543112342--
Q gi|254780567|r 67 VILVGPSGSGKSCLANIWSDKSR-----STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSS-- 139 (246)
Q Consensus 67 l~i~G~~GsGKTHLl~a~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~iddi~~~~~~ee~lf~l~n~~~~~~~~-- 139 (246)
++|-|.+|||||..+.+++++.+ +.|+....+........--.-+=+-|.+... |-+.+=.-.-....+++-
T Consensus 1 ~VlmGvaG~GKs~~a~~l~~~lg~iyPd~~yieGDdLHP~~Ni~KMs~GiPL~DdDR~p-WL~~l~~~~~~~~~~~~~~~ 79 (175)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGDIYPDAKYIEGDDLHPAANIEKMSRGIPLNDDDRWP-WLKNLADALAQAAAKNKVHL 79 (175)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCHH-HHHHHHHHHHHHHHCCCCCC
T ss_conf 96760278628899999999854315788756886667877798731788887012043-79999999999984577454
Q ss_pred EEEEECCCCCCHHHHHHHHH----HHHHHCCEEEECCCCH
Q ss_conf 15640354320022345667----8852122245078897
Q gi|254780567|r 140 LLMTARTFPVSWGVCLPDLC----SRLKAATVVKISLPDD 175 (246)
Q Consensus 140 iilts~~~p~~~~~~l~DL~----SRl~~g~~~~I~~pdd 175 (246)
.|++|+.-=...- .-|| -+=.....+.+..+.+
T Consensus 80 ~~~~CSALKr~YR---D~LR~s~~~~~~~~~FiyL~~~~~ 116 (175)
T TIGR01313 80 VIITCSALKRKYR---DILRSSLEEAEPELHFIYLSGSKE 116 (175)
T ss_pred EEEEEECCHHHHH---HHHHHHHCCCCCCEEEEEECCCHH
T ss_conf 4788401113555---665422026898437886368989
No 253
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.33 E-value=0.0038 Score=39.25 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=21.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8849998787778688999999862
Q gi|254780567|r 64 SRVVILVGPSGSGKSCLANIWSDKS 88 (246)
Q Consensus 64 ~~~l~i~G~~GsGKTHLl~a~~~~~ 88 (246)
.+.++|.||||+|||+|++.++...
T Consensus 194 KknvIL~G~pGtGKT~lAk~lA~~l 218 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLL 218 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 8827965899988789999999997
No 254
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.33 E-value=0.0033 Score=39.60 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=21.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 7884999878777868899999986
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
++..+.|.||+|||||.|+++++.-
T Consensus 49 ~GE~~~ivG~SGsGKSTLLr~i~GL 73 (269)
T cd03294 49 EGEIFVIMGLSGSGKSTLLRCINRL 73 (269)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 9999999989984899999999759
No 255
>TIGR02142 modC_ABC molybdate ABC transporter, ATP-binding protein; InterPro: IPR011868 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulphate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulphate transporter rather than by a specific molybdate transporter.; GO: 0005524 ATP binding, 0015098 molybdate ion transmembrane transporter activity, 0015689 molybdate ion transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=96.32 E-value=0.0022 Score=40.72 Aligned_cols=26 Identities=38% Similarity=0.566 Sum_probs=20.9
Q ss_pred CCC-CEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 678-84999878777868899999986
Q gi|254780567|r 62 WPS-RVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 62 ~~~-~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
-|+ ...=|+|.||||||.|+++++--
T Consensus 20 ~pg~GvtAlFG~SGsGKTtli~~iaGL 46 (361)
T TIGR02142 20 LPGQGVTALFGRSGSGKTTLIRLIAGL 46 (361)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHC
T ss_conf 287406871258997078999998731
No 256
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.31 E-value=0.0038 Score=39.25 Aligned_cols=25 Identities=32% Similarity=0.555 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 7884999878777868899999986
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
++..+.|.||+|||||.|++.++--
T Consensus 25 ~Ge~~~iiGpSGsGKSTllr~i~Gl 49 (232)
T cd03300 25 EGEFFTLLGPSGCGKTTLLRLIAGF 49 (232)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 9989999999998399999999779
No 257
>TIGR02868 CydC ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; InterPro: IPR014223 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents CydC, a member of a heterodimeric ATP-binding cassette-type transporter (ABC transporter). It is involved in the export of glutathione from the cytoplasm to the periplasm and is required for the assembly of both cytochrome c and cytochrome bd , , .; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane.
Probab=96.31 E-value=0.0035 Score=39.50 Aligned_cols=26 Identities=42% Similarity=0.585 Sum_probs=23.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 67884999878777868899999986
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.|++.+-|.||+|||||.|++.|..-
T Consensus 385 ~~G~r~Ai~G~SG~GKsTLL~~L~G~ 410 (566)
T TIGR02868 385 PPGERVAILGPSGSGKSTLLATLAGL 410 (566)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHH
T ss_conf 38860898668876578999999840
No 258
>TIGR02528 EutP ethanolamine utilization protein, EutP; InterPro: IPR012381 Members of this family function in ethanolamine and propanediol degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose , . More than 10f the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect , . The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella , , . Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 biogenic amine metabolic process.
Probab=96.31 E-value=0.011 Score=36.36 Aligned_cols=109 Identities=12% Similarity=0.206 Sum_probs=55.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHHH------HCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC
Q ss_conf 84999878777868899999986------27620135-676444546666665334332100376103354555431123
Q gi|254780567|r 65 RVVILVGPSGSGKSCLANIWSDK------SRSTRFSN-IAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYD 137 (246)
Q Consensus 65 ~~l~i~G~~GsGKTHLl~a~~~~------~~~~~~~~-~~~~~~~~~~~~~~~i~iddi~~~~~~ee~lf~l~n~~~~~~ 137 (246)
+-+.+-|++|||||.|.|++.++ +.|+=+.. ..+.++-.+. ....+++-+--....-
T Consensus 1 Kr~~f~G~~gCGKTTL~q~L~g~~~~YKKTQAvE~~~k~~IDTPGEY~----------------enr~~Y~AL~vtaaDA 64 (144)
T TIGR02528 1 KRIMFIGSVGCGKTTLTQALQGEEIKYKKTQAVEYKDKEAIDTPGEYV----------------ENRRYYSALIVTAADA 64 (144)
T ss_pred CEEEEEECCCCCHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCC----------------CCCCHHHHHHHHHHCC
T ss_conf 917887158887443543116873210233445425888655985001----------------5752378888887210
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHH----HHCCEEEECCCCHHHHHHHHHHHHHHCC
Q ss_conf 4215640354320022345667885----2122245078897899999999866628
Q gi|254780567|r 138 SSLLMTARTFPVSWGVCLPDLCSRL----KAATVVKISLPDDDFLEKVIVKMFADRQ 190 (246)
Q Consensus 138 ~~iilts~~~p~~~~~~l~DL~SRl----~~g~~~~I~~pdde~~~~il~k~~~~r~ 190 (246)
.-|++.-+.. ..+..+-|-+.|=+ .=|+|-+++-|+++..+..-+..+..-|
T Consensus 65 d~i~lV~~a~-~~~~~f~PgF~~~f~kK~~IG~vTK~DLA~~d~~i~r~~~~L~~AG 120 (144)
T TIGR02528 65 DVIALVQSAT-DEESRFSPGFASIFVKKEVIGIVTKIDLAEADKDIERAKRLLETAG 120 (144)
T ss_pred EEEEEEECCC-CCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCC
T ss_conf 2366773577-6422378500023678863478840378877347999999987236
No 259
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=96.30 E-value=0.0037 Score=39.31 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=22.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 67884999878777868899999986
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.++..+.|-||+|||||.|+++++--
T Consensus 29 ~~GE~~~llGpSG~GKTTlLr~iaGL 54 (362)
T TIGR03258 29 EAGELLALIGKSGCGKTTLLRAIAGF 54 (362)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 99989999999974599999999777
No 260
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL; InterPro: IPR012701 Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three-component ABC transporter, where IPR005769 from INTERPRO is the permease, IPR005770 from INTERPRO is the phosphonates binding protein, and IPR012693 from INTERPRO is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lyase complex. This protein (PhnL) and the adjacent-encoded PhnK (IPR012700 from INTERPRO) resemble transporter ATP-binding proteins but are suggested, based on mutagenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se ..
Probab=96.29 E-value=0.0035 Score=39.43 Aligned_cols=26 Identities=38% Similarity=0.515 Sum_probs=22.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 78849998787778688999999862
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDKS 88 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~~ 88 (246)
++-.+.|.||+|+|||.||+++...+
T Consensus 33 aGEcv~L~G~SGaGKSTlLk~lYaNY 58 (224)
T TIGR02324 33 AGECVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 67358853688876789999766304
No 261
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.28 E-value=0.03 Score=33.72 Aligned_cols=29 Identities=31% Similarity=0.570 Sum_probs=23.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCHH
Q ss_conf 49998787778688999999862762013
Q gi|254780567|r 66 VVILVGPSGSGKSCLANIWSDKSRSTRFS 94 (246)
Q Consensus 66 ~l~i~G~~GsGKTHLl~a~~~~~~~~~~~ 94 (246)
-++|-|+||+|||.+++.+++...-..++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hls 30 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLD 30 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEC
T ss_conf 79998999998899999999976997855
No 262
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.28 E-value=0.034 Score=33.35 Aligned_cols=27 Identities=19% Similarity=0.337 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 788499987877786889999998627
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDKSR 89 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~~~ 89 (246)
..+.++|.|+.|||||.|+++++....
T Consensus 159 ~r~NilI~G~TgSGKTTll~aL~~~ip 185 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 487199988889889999999983589
No 263
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.28 E-value=0.004 Score=39.10 Aligned_cols=26 Identities=42% Similarity=0.638 Sum_probs=22.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 67884999878777868899999986
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
..+..+.|.||+|||||.|++.++.-
T Consensus 25 ~~Ge~v~i~GpSGsGKSTLl~~i~gl 50 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 59989999979995399999999629
No 264
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.27 E-value=0.0041 Score=39.06 Aligned_cols=26 Identities=35% Similarity=0.627 Sum_probs=22.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 67884999878777868899999986
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.++..+++-||+|||||.|++.++--
T Consensus 29 a~ge~vv~lGpSGcGKTTLLnl~AGf 54 (259)
T COG4525 29 ASGELVVVLGPSGCGKTTLLNLIAGF 54 (259)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 58978999768886578899998627
No 265
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=96.26 E-value=0.016 Score=35.38 Aligned_cols=98 Identities=17% Similarity=0.161 Sum_probs=54.3
Q ss_pred CEEE-EECCCCCCHHHHHHHHHHHHCCCCHHHHH--------------------HHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 8499-98787778688999999862762013567--------------------64445466666653343321003761
Q gi|254780567|r 65 RVVI-LVGPSGSGKSCLANIWSDKSRSTRFSNIA--------------------KSLDSILIDTRKPVLLEDIDLLDFND 123 (246)
Q Consensus 65 ~~l~-i~G~~GsGKTHLl~a~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~i~iddi~~~~~~e 123 (246)
.+++ +.||+|+|||.|.+++...+....+..+. .......+.....+++--+++--|-|
T Consensus 69 PfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiTflEcp~Dl~~miDvaKIaDLVlLlIdgnfGfE 148 (1077)
T COG5192 69 PFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFLECPSDLHQMIDVAKIADLVLLLIDGNFGFE 148 (1077)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEEEEECHHHHHHHHHHHHHHHEEEEEECCCCCCE
T ss_conf 75899636998874689999999987754203678647861563578988671788888768875213578863666704
Q ss_pred HHHHHHHHHHHCCCCCEEEEE------CCCCCCHHHHHHHHHHHH
Q ss_conf 033545554311234215640------354320022345667885
Q gi|254780567|r 124 TQLFHIINSIHQYDSSLLMTA------RTFPVSWGVCLPDLCSRL 162 (246)
Q Consensus 124 e~lf~l~n~~~~~~~~iilts------~~~p~~~~~~l~DL~SRl 162 (246)
-+.+.++|.+..+|-+-++.- -..|+.+.-.-++|..||
T Consensus 149 METmEFLnil~~HGmPrvlgV~ThlDlfk~~stLr~~KKrlkhRf 193 (1077)
T COG5192 149 METMEFLNILISHGMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRF 193 (1077)
T ss_pred EHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 248899999866489724788862113358378999998876667
No 266
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=96.25 E-value=0.0046 Score=38.72 Aligned_cols=46 Identities=13% Similarity=0.168 Sum_probs=30.7
Q ss_pred CCCCCCEEEC-CCHHHHHH-----HHHHHHCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 6884541653-61899999-----9985101678849998787778688999
Q gi|254780567|r 37 GISRDDLLVH-SAIEQAVR-----LIDSWPSWPSRVVILVGPSGSGKSCLAN 82 (246)
Q Consensus 37 ~~~~dnFiv~-~~N~~A~~-----~i~~~~~~~~~~l~i~G~~GsGKTHLl~ 82 (246)
.|+||.-|-. .+++..|+ ++....++-+-.++-||..||||||-+.
T Consensus 56 ~f~FD~vf~~~~tQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTGSGKTyTm~ 107 (345)
T cd01368 56 KFSFSKVFGPNTTQKEFFEGTALPLVQDLLKGKNSLLFTYGVTNSGKTYTMQ 107 (345)
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC
T ss_conf 6577856399999899999987889999848872479995478898752426
No 267
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.23 E-value=0.011 Score=36.36 Aligned_cols=109 Identities=12% Similarity=0.161 Sum_probs=52.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHCCCCC
Q ss_conf 88499987877786889999998627620135676444546666665334332100376----10335455543112342
Q gi|254780567|r 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN----DTQLFHIINSIHQYDSS 139 (246)
Q Consensus 64 ~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iddi~~~~~~----ee~lf~l~n~~~~~~~~ 139 (246)
+-.+||.|-||||||.|++++.............+.-+ ..+..+..+...-..+ -..+-++-..+..+|.
T Consensus 4 g~viWltGlsgSGKTTia~~l~~~L~~~~~~~~~LDGD-----~lR~~l~~~lgfs~~dR~~n~~r~~~la~~l~~~g~- 77 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTISHALAEKLRARGYPVEVLDGD-----IVRTNLSKGLGFSKEDRDTNIRRIGFVAHLLTRHGV- 77 (175)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCH-----HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-
T ss_conf 88999889899999999999999999869967997768-----888753678898989999999999999999981898-
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHH
Q ss_conf 15640354320022345667885212224507889789999
Q gi|254780567|r 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 (246)
Q Consensus 140 iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~ 180 (246)
+++.|-..|.. -..+..++.+....-+-+..|=++....
T Consensus 78 ~vIvs~isp~~--~~R~~~r~~~~~~~EIyv~~~l~~~~~R 116 (175)
T PRK00889 78 IVLVSAISPYR--ETREEVRGTIGNFVEVFVNAPLEVCEQR 116 (175)
T ss_pred EEEEEECCCCH--HHHHHHHHHCCCCEEEEECCCHHHHHHC
T ss_conf 68885047999--9999999857876699842888999880
No 268
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=96.20 E-value=0.0046 Score=38.76 Aligned_cols=43 Identities=28% Similarity=0.373 Sum_probs=30.7
Q ss_pred EECCCHHHHHHHHHHHHC---------------------CCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 653618999999985101---------------------6788499987877786889999998
Q gi|254780567|r 44 LVHSAIEQAVRLIDSWPS---------------------WPSRVVILVGPSGSGKSCLANIWSD 86 (246)
Q Consensus 44 iv~~~N~~A~~~i~~~~~---------------------~~~~~l~i~G~~GsGKTHLl~a~~~ 86 (246)
+.|+.-+.|+++++.=.. .++-.+.|-||+|||||.|+++++.
T Consensus 9 iFG~~~~~a~~~~~~g~~k~~i~~~tg~~vAV~dvsl~I~~GEi~~lvGpSGsGKSTLLr~i~G 72 (382)
T TIGR03415 9 VFGDQPAEALALLDQGKTREEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNG 72 (382)
T ss_pred ECCCCHHHHHHHHHCCCCHHHHHHHHCCEEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 5289989999999879998999883399998965174887998999999997349999999975
No 269
>PRK13949 shikimate kinase; Provisional
Probab=96.19 E-value=0.028 Score=33.87 Aligned_cols=103 Identities=15% Similarity=0.183 Sum_probs=54.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHCCCC
Q ss_conf 8499987877786889999998627620135676444546666665334332100376------1033545554311234
Q gi|254780567|r 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN------DTQLFHIINSIHQYDS 138 (246)
Q Consensus 65 ~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iddi~~~~~~------ee~lf~l~n~~~~~~~ 138 (246)
+.++|.|..|||||.+.+.+++..+..+++....-. ...-.-+.++....|. |.. .+..+.....
T Consensus 2 k~I~LiG~mGsGKstiGk~La~~l~~~fiD~D~~Ie------~~~g~sI~eif~~~Ge~~FR~~E~~---~l~~l~~~~~ 72 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIE------NRFHKTVGDIFAERGEAVFRELERN---MLHEVAEFED 72 (169)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHH------HHHCCCHHHHHHHHCHHHHHHHHHH---HHHHHHCCCC
T ss_conf 838997999998899999999995999797849999------9859999999998698999999999---9999845898
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHH-HHCCEEEECCCCHHHHHHH
Q ss_conf 215640354320022345667885-2122245078897899999
Q gi|254780567|r 139 SLLMTARTFPVSWGVCLPDLCSRL-KAATVVKISLPDDDFLEKV 181 (246)
Q Consensus 139 ~iilts~~~p~~~~~~l~DL~SRl-~~g~~~~I~~pdde~~~~i 181 (246)
.++-|+...+-.- +-...+ +.|.++-++.+-+.....+
T Consensus 73 ~VistGGG~v~~~-----~n~~~l~~~g~vV~L~~~~~~l~~Rl 111 (169)
T PRK13949 73 VVISTGGGAPCFF-----DNMELMNASGTTVYLKVSPEVLFVRL 111 (169)
T ss_pred EEEECCCCCCCCH-----HHHHHHHHCCEEEEEECCHHHHHHHH
T ss_conf 3997486311579-----99999996895799989999999997
No 270
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.19 E-value=0.0047 Score=38.70 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=21.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 7884999878777868899999986
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
++..+-|.||+|||||.|+++++--
T Consensus 22 ~ge~~~iiGpSGsGKSTll~~i~GL 46 (214)
T cd03297 22 NEEVTGIFGASGAGKSTLLRCIAGL 46 (214)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 9979999999973599999999849
No 271
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.19 E-value=0.0049 Score=38.56 Aligned_cols=25 Identities=44% Similarity=0.648 Sum_probs=22.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 7884999878777868899999986
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
++..+.|.||+|||||.|+++++.-
T Consensus 25 ~Ge~~~ivGpSG~GKSTllr~i~Gl 49 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 9989999999998399999999859
No 272
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.18 E-value=0.062 Score=31.79 Aligned_cols=54 Identities=19% Similarity=0.239 Sum_probs=35.0
Q ss_pred CCCCCCCCCEEECCC-HHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 776688454165361-8999999985101678849998787778688999999862
Q gi|254780567|r 34 RCLGISRDDLLVHSA-IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS 88 (246)
Q Consensus 34 ~~~~~~~dnFiv~~~-N~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~ 88 (246)
....++.++++-... +.....++..... ....++|.|+.|||||.|++++.++.
T Consensus 119 ~~~~~tL~dlv~~G~~~~~~a~~L~~~V~-~r~nilI~G~TgsGKTTll~all~~i 173 (320)
T PRK13894 119 AVAIFTLDQYVERGIMTAEQREAIIAAVR-AHRNILVIGGTGSGKTTLVNAIINEM 173 (320)
T ss_pred CCCCCCHHHHHHCCCCCHHHHHHHHHHHH-CCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89999999998769999999999999997-28758998588865689999998632
No 273
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.17 E-value=0.0049 Score=38.56 Aligned_cols=24 Identities=46% Similarity=0.764 Sum_probs=20.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 788499987877786889999998
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSD 86 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~ 86 (246)
++..+.|.||+|||||.|++.+..
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 897899989999988899999977
No 274
>PRK06762 hypothetical protein; Provisional
Probab=96.16 E-value=0.014 Score=35.75 Aligned_cols=151 Identities=13% Similarity=0.113 Sum_probs=90.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 88499987877786889999998627620135676444546666665334332100376103354555431123421564
Q gi|254780567|r 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMT 143 (246)
Q Consensus 64 ~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iddi~~~~~~ee~lf~l~n~~~~~~~~iilt 143 (246)
.+.++|=|.+|||||.+++.+....+..-.- .+.+. .....+-..|..+ +..-..+..+......++..+|+=
T Consensus 2 t~LIiiRGNSgSGKtT~Ak~L~~~~G~g~lL---vsQD~---vRR~mLr~kD~~g-~~~i~Li~~~~~yg~~~~~~VIlE 74 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLL---VSQDV---VRRDMLRVKDGPG-NLSIDLIEQLVRYGLQHCEFVILE 74 (166)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCCEE---EEHHH---HHHHHHHCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 5289997888888789999999986888578---53758---9999840557799-978689999999998569989997
Q ss_pred ECCCCCCHHHHHHHHHHHHH-HCCEEEECCCCHHHHHHHHHHH-H------HHCCCCCCHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 03543200223456678852-1222450788978999999998-6------66289798899999994066798999999
Q gi|254780567|r 144 ARTFPVSWGVCLPDLCSRLK-AATVVKISLPDDDFLEKVIVKM-F------ADRQIFIDKKLAAYIVQRMERSLVFAEKL 215 (246)
Q Consensus 144 s~~~p~~~~~~l~DL~SRl~-~g~~~~I~~pdde~~~~il~k~-~------~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~ 215 (246)
+-.......-.+..|.--+. ...++-..-|=+|+++.-..+. + ..+++-.+.|.+.+.-+.+-.+-.++...
T Consensus 75 GIL~a~~Yg~ml~~l~~~~~~~~~~YY~Di~FeETlrRH~tr~~~~~Fg~~~mr~W~~~~D~L~~~~E~~~~~~~tl~~~ 154 (166)
T PRK06762 75 GILNSDRYGPMLKELIHLFGGNAYTYYFDLSFEETVRRHNTRPKSHEFGEDDMRRWWLPHDTLGVEGETIFTDELSLNDI 154 (166)
T ss_pred EECCHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCEEECCCCCHHHH
T ss_conf 41004489999999998657866999994877999998746776567698999977555455599986785776788999
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780567|r 216 VDKMDN 221 (246)
Q Consensus 216 l~~Ld~ 221 (246)
++++-+
T Consensus 155 v~~Il~ 160 (166)
T PRK06762 155 FDAILT 160 (166)
T ss_pred HHHHHH
T ss_conf 999999
No 275
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.16 E-value=0.0048 Score=38.60 Aligned_cols=25 Identities=32% Similarity=0.555 Sum_probs=21.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 7884999878777868899999986
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.+..+.|.||+|||||.|+++++.-
T Consensus 24 ~Ge~~~iiGpSGsGKSTLlr~i~Gl 48 (235)
T cd03299 24 RGDYFVILGPTGSGKSVLLETIAGF 48 (235)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 9989999999963599999999749
No 276
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=96.16 E-value=0.0043 Score=38.90 Aligned_cols=26 Identities=31% Similarity=0.524 Sum_probs=22.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 67884999878777868899999986
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.++..+.|-||+|||||.|+++++.-
T Consensus 30 ~~Ge~~~llGpSG~GKTTlLr~iaGl 55 (351)
T PRK11432 30 KQGTMVTLLGPSGCGKTTVLRLVAGL 55 (351)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 89989999999964999999999769
No 277
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.15 E-value=0.063 Score=31.75 Aligned_cols=114 Identities=21% Similarity=0.340 Sum_probs=58.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HHH---HHHHHHHCCCCCCHHHHHHHHHHH----CCC
Q ss_conf 499987877786889999998627620135676444546666-665---334332100376103354555431----123
Q gi|254780567|r 66 VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT-RKP---VLLEDIDLLDFNDTQLFHIINSIH----QYD 137 (246)
Q Consensus 66 ~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~---i~iddi~~~~~~ee~lf~l~n~~~----~~~ 137 (246)
.++|.|||||||+..+..++++++...++.....-....... ... -.++.=... ..+.+..++.... ...
T Consensus 2 ~iillGpPGsGKgT~a~~l~~~~~~~hiStGdllR~~i~~~t~lg~~ik~~i~~G~LV--pD~iv~~lv~~~l~~~~~~~ 79 (225)
T PTZ00088 2 KIVLFGAPGVGKGTFAEILSKKEKLKHINMGNILRDEIKKESNIGKEIHKVVRSGNLV--ADELIIKIVHDEIAKILAKD 79 (225)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCEEECHHHHHHHHHHCCCHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHHHHCCC
T ss_conf 7999899999879999999998799068789999999973998899999999779846--68999999999998444246
Q ss_pred ---CCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHH
Q ss_conf ---42156403543200223456678852122245078897899999999
Q gi|254780567|r 138 ---SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 (246)
Q Consensus 138 ---~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k 184 (246)
+..++ +.-|..+.-. +.|.+-..--.++.+..|+++....+..+
T Consensus 80 ~~~~GfIL--DGfPRt~~QA-~~L~~~~~id~vi~l~v~~~~li~Rl~gR 126 (225)
T PTZ00088 80 GHFKGFIL--DGFPRNLLQC-KELIEITNIDLFVNIHLPRHILIKKILGR 126 (225)
T ss_pred CCCCCEEE--CCCCCCHHHH-HHHHHHCCCCEEEEEECCHHHHHHHHHCC
T ss_conf 43474365--2788877999-99997467887999966899999999706
No 278
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA; InterPro: IPR005895 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family contains the cytochrome c biogenesis protein encoded by ccmA in bacteria and one arabidopsis protein, possibly encoded by an organelle. Bacterial c-type cytochromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The post-translational pathway includes the transport of a heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which functions as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.; GO: 0005215 transporter activity, 0017004 cytochrome complex assembly, 0030288 outer membrane-bounded periplasmic space.
Probab=96.12 E-value=0.0049 Score=38.57 Aligned_cols=24 Identities=29% Similarity=0.547 Sum_probs=21.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 788499987877786889999998
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSD 86 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~ 86 (246)
++..+.|-||-|+|||.||++++-
T Consensus 25 aGe~l~v~GpNG~GKTtLLR~LAG 48 (204)
T TIGR01189 25 AGEALQVEGPNGIGKTTLLRILAG 48 (204)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 782789860698735789999985
No 279
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.11 E-value=0.0055 Score=38.26 Aligned_cols=26 Identities=42% Similarity=0.647 Sum_probs=22.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 67884999878777868899999986
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.++..+.|.||+|||||.|++.++.-
T Consensus 25 ~~Ge~~~iiGpsGsGKSTLl~~i~gl 50 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 99989999999983399999999749
No 280
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.10 E-value=0.0054 Score=38.33 Aligned_cols=25 Identities=40% Similarity=0.675 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 7884999878777868899999986
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
++..+.|.||+|||||.|++.++.-
T Consensus 27 ~Ge~~~iiGpSGsGKSTll~~i~Gl 51 (239)
T cd03296 27 SGELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 9989999999997799999999769
No 281
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.10 E-value=0.0055 Score=38.25 Aligned_cols=26 Identities=42% Similarity=0.612 Sum_probs=22.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 67884999878777868899999986
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.++..+.|.||+|||||.|++.++.-
T Consensus 22 ~~Ge~~~ilGpSGsGKSTLl~li~Gl 47 (211)
T cd03298 22 AQGEITAIVGPSGSGKSTLLNLIAGF 47 (211)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 89989999999995599999999769
No 282
>TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345 These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. .
Probab=96.10 E-value=0.0086 Score=37.05 Aligned_cols=160 Identities=16% Similarity=0.136 Sum_probs=89.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCC----HHHHHHH---------------------------------------
Q ss_conf 788499987877786889999998627620----1356764---------------------------------------
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTR----FSNIAKS--------------------------------------- 99 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~----~~~~~~~--------------------------------------- 99 (246)
..+..+|.|+||.|||...+++...+.... -+..+.+
T Consensus 364 ~~Kv~iLTGGPGTGKtT~t~~i~~~~~~~~gl~l~~~~~vndd~~v~LaAPTGrAAkRl~E~TG~~a~TIHRLlG~~~~~ 443 (769)
T TIGR01448 364 QDKVVILTGGPGTGKTTITKAIIELYEELKGLDLDKDDYVNDDLPVVLAAPTGRAAKRLAEVTGLEALTIHRLLGYGSDT 443 (769)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHCCCCCCCHHHHHHHHHCCCCCC
T ss_conf 09489985778886168999999999871687755312456776488737743788851100262123477863689888
Q ss_pred --HH--HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEECCC--CCCH-HHHHHHHHHHHHHCCEEEECC
Q ss_conf --44--5466666653343321003761033545554311234215640354--3200-223456678852122245078
Q gi|254780567|r 100 --LD--SILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTF--PVSW-GVCLPDLCSRLKAATVVKISL 172 (246)
Q Consensus 100 --~~--~~~~~~~~~i~iddi~~~~~~ee~lf~l~n~~~~~~~~iilts~~~--p~~~-~~~l~DL~SRl~~g~~~~I~~ 172 (246)
.. ...-...+++++|....+ .++|++-|-...-.+.++|+.+|.. |+-- .-.+.||..= ....++.+..
T Consensus 444 ~~~~k~~~~~~~~DL~IvDE~SM~---Dt~L~~~lL~a~P~~a~lllVGD~DQLPSV~pG~VL~DLi~s-~~iP~~~LT~ 519 (769)
T TIGR01448 444 KSENKNLEDPIDADLLIVDESSMV---DTWLASSLLAAVPDHARLLLVGDADQLPSVGPGQVLKDLIQS-KVIPVTRLTK 519 (769)
T ss_pred CCCCHHHCCCCCCCEEEEECCCHH---HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHC-CCCCEEECCC
T ss_conf 732110113478776998146218---899999998617977779888376888988644089999846-8866121211
Q ss_pred CCH-HHHHHHHHHHHHHCCCCCC-----HHHHHHHHHCCCC-----CHHHHHHHHHHHHHHHHHH
Q ss_conf 897-8999999998666289798-----8999999940667-----9899999999999999984
Q gi|254780567|r 173 PDD-DFLEKVIVKMFADRQIFID-----KKLAAYIVQRMER-----SLVFAEKLVDKMDNLALSR 226 (246)
Q Consensus 173 pdd-e~~~~il~k~~~~r~i~l~-----~~v~~yl~~r~~R-----s~~~l~~~l~~Ld~~sl~~ 226 (246)
.=- ..--.|+.....-++=..| ....||.-...+| -.+.+..+|+.+...+...
T Consensus 520 vyRQ~~~S~Ii~~Ah~~~~G~~Pvlnss~~~~Df~~~~~~~s~~e~~~~~i~~~v~~~~~~a~~~ 584 (769)
T TIGR01448 520 VYRQAEGSSIITLAHKILQGEAPVLNSSSAKKDFKFLKLDRSEPEEAAKHIPLMVEKIVGAAKKK 584 (769)
T ss_pred EEEECCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 12411366467888987317887523244676677776400101066678999998877898717
No 283
>pfam08298 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.07 E-value=0.014 Score=35.73 Aligned_cols=59 Identities=22% Similarity=0.276 Sum_probs=35.1
Q ss_pred CCCCCCCCCCC-CCCEEECCCHHHHHHH----HHHHHCC---CCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 55888776688-4541653618999999----9851016---7884999878777868899999986276
Q gi|254780567|r 29 FFSFPRCLGIS-RDDLLVHSAIEQAVRL----IDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS 90 (246)
Q Consensus 29 ~l~~~~~~~~~-~dnFiv~~~N~~A~~~----i~~~~~~---~~~~l~i~G~~GsGKTHLl~a~~~~~~~ 90 (246)
+|.......|. |++|+ | .+.++.- +.....+ ....++|.||+|+|||+|...+.+-...
T Consensus 45 if~~~~i~rY~~F~dff-G--me~~i~~iV~~~ksAA~g~e~~kqIllL~GPVGsGKSsl~e~LK~glE~ 111 (358)
T pfam08298 45 IFSNRVIKRYPAFADFF-G--MEETIERIVNYFRHAAQGLEERKQILYLLGPVGGGKSSLAERLKKLLEL 111 (358)
T ss_pred ECCCCCCCCCCCCCCCC-C--HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 31577630255423200-1--5999999999999997236721058999778987758999999987205
No 284
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=96.07 E-value=0.066 Score=31.62 Aligned_cols=168 Identities=14% Similarity=0.040 Sum_probs=82.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH-----HCC-------------------CCHHHHHH--------HHHHH------H
Q ss_conf 7884999878777868899999986-----276-------------------20135676--------44454------6
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDK-----SRS-------------------TRFSNIAK--------SLDSI------L 104 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~-----~~~-------------------~~~~~~~~--------~~~~~------~ 104 (246)
+..++.|.|.+||||--++..+++. ..+ ..+..... ..... .
T Consensus 7 ~~halLl~~~~G~~~~~~~~~~~k~LlC~~~~~PCG~C~sC~~i~~g~HPD~~~i~pe~~sIkieqir~li~~l~~~s~e 86 (262)
T PRK05818 7 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVE 86 (262)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 98505664487764699999999986228999999888627867558999779971664557798999999998211400
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCC--CEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHH
Q ss_conf 6666653343321003761033545554311234--21564035432002234566788521222450788978999999
Q gi|254780567|r 105 IDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDS--SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 (246)
Q Consensus 105 ~~~~~~i~iddi~~~~~~ee~lf~l~n~~~~~~~--~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il 182 (246)
....+++++++.+.+. +++.=.++-.+.+-.. ..++++. .| ...+|-.+||+-.-.+ .+-+......+.
T Consensus 87 ~~g~KV~II~~Ae~Mt--~~AANALLKtLEEPp~nt~fIL~t~-~~---~~LLPTIrSRC~~~~~---~~~~~~~~~~~~ 157 (262)
T PRK05818 87 SNGKKIYIIYGIEKLN--KQSANSLLKLIEEPPKNTYGIFTTR-NE---NNILNTILSRCVQYVV---LSKEKKVPFKVE 157 (262)
T ss_pred CCCCEEEEECCHHHHC--HHHHHHHHHHHCCCCCCEEEEEEEC-CH---HHCCCHHHHHCCCCCC---CCHHHHHHHHHH
T ss_conf 2884899987778749--9999999986128987838999738-81---4373088877014466---643466788887
Q ss_pred HHHHHHCCCCCCHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 998666289798899999994066-798999999999999999847787889999999867
Q gi|254780567|r 183 VKMFADRQIFIDKKLAAYIVQRME-RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 (246)
Q Consensus 183 ~k~~~~r~i~l~~~v~~yl~~r~~-Rs~~~l~~~l~~Ld~~sl~~kr~ITi~lvk~vL~~~ 242 (246)
.+......+..+..-++-++.... .|++.+..++ |+.....++.+++.-|+..++..
T Consensus 158 ~~~~~~~~i~~~~~s~de~~~~~~~gs~~~~l~il---~~~i~~~n~~~~~~~~~~l~~~i 215 (262)
T PRK05818 158 SNDRYFQYILLSFYSVDEQLQAYNNGSFSKLKNII---ETLINKKNKLIQIHKAWILFKTF 215 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH---HHHHHCCCCCEEHHHHHHHHHCC
T ss_conf 40888987641011079999886167688899999---99987568843399999998313
No 285
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=96.07 E-value=0.011 Score=36.35 Aligned_cols=35 Identities=29% Similarity=0.359 Sum_probs=24.2
Q ss_pred HHHHHHHCC--CCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 999851016--78849998787778688999999862
Q gi|254780567|r 54 RLIDSWPSW--PSRVVILVGPSGSGKSCLANIWSDKS 88 (246)
Q Consensus 54 ~~i~~~~~~--~~~~l~i~G~~GsGKTHLl~a~~~~~ 88 (246)
.++...... +...+++||.+|=||||++.-...+.
T Consensus 20 ~~L~~a~~~~~~~~lIfLCGSvGDGKShILs~~k~~~ 56 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILAENKRKF 56 (504)
T ss_pred HHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9999863148977489996588886899999988987
No 286
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.05 E-value=0.044 Score=32.72 Aligned_cols=107 Identities=13% Similarity=0.270 Sum_probs=56.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC-----CH---------------------------------------HHHH-HHH
Q ss_conf 49998787778688999999862762-----01---------------------------------------3567-644
Q gi|254780567|r 66 VVILVGPSGSGKSCLANIWSDKSRST-----RF---------------------------------------SNIA-KSL 100 (246)
Q Consensus 66 ~l~i~G~~GsGKTHLl~a~~~~~~~~-----~~---------------------------------------~~~~-~~~ 100 (246)
-++|.|+||+|||.|++-+++.-... .+ |... ..+
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~~l 86 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVEGL 86 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCEEEEEEEEECCCCCEEEEEECCCCCCCCCEEEEEHHHH
T ss_conf 99986799845899999999999855966513983114208827515999814795579888478876210478627888
Q ss_pred HHHH-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCC
Q ss_conf 4546-------666665334332100376103354555431123421564035432002234566788521222450788
Q gi|254780567|r 101 DSIL-------IDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 (246)
Q Consensus 101 ~~~~-------~~~~~~i~iddi~~~~~~ee~lf~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~p 173 (246)
.... ....+.+++|.+--+...-..+-..+.....++++++.|-..... +-.+.+++++..-- ++ |.+-
T Consensus 87 e~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr--~P~v~~ik~~~~v~-v~-lt~~ 162 (179)
T COG1618 87 EEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSR--HPLVQRIKKLGGVY-VF-LTPE 162 (179)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCHHHCCHHHHHHHHHHHCCCCCEEEEEECCCC--CHHHHHHHHCCCEE-EE-ECCC
T ss_conf 99868999988634998999433633020088999999996589937999962567--75899864248779-99-7512
Q ss_pred CHH
Q ss_conf 978
Q gi|254780567|r 174 DDD 176 (246)
Q Consensus 174 dde 176 (246)
+-+
T Consensus 163 NR~ 165 (179)
T COG1618 163 NRN 165 (179)
T ss_pred HHH
T ss_conf 156
No 287
>TIGR00954 3a01203 Peroxysomal long chain fatty acyl transporter; InterPro: IPR005283 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). The members of this family are integral membrane proteins and they are involved in the import of activated long-chain fatty acids from the cytosol to the peroxisomal matrix. ; GO: 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane.
Probab=96.04 E-value=0.0064 Score=37.86 Aligned_cols=29 Identities=28% Similarity=0.509 Sum_probs=24.8
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 10167884999878777868899999986
Q gi|254780567|r 59 WPSWPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 59 ~~~~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
+..+.++.+.|+||-|||||.|=+++++-
T Consensus 551 flqGsG~~lLi~GPNGCGKSSLFRiLGeL 579 (788)
T TIGR00954 551 FLQGSGNHLLICGPNGCGKSSLFRILGEL 579 (788)
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 12158876687688998647899998643
No 288
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.04 E-value=0.0061 Score=37.97 Aligned_cols=24 Identities=46% Similarity=0.743 Sum_probs=21.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 788499987877786889999998
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSD 86 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~ 86 (246)
.+..+-+.||+|||||.|+++++-
T Consensus 27 ~Ge~vaLlGpSGaGKsTlLRiIAG 50 (345)
T COG1118 27 SGELVALLGPSGAGKSTLLRIIAG 50 (345)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 886899977898767889999857
No 289
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.04 E-value=0.006 Score=38.02 Aligned_cols=26 Identities=31% Similarity=0.598 Sum_probs=22.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 67884999878777868899999986
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.++..+-|.||+|||||.|+++++.-
T Consensus 25 ~~Ge~~~lvGpnGaGKSTLl~~i~Gl 50 (255)
T PRK11248 25 ESGELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 69989999999984699999999759
No 290
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.04 E-value=0.0067 Score=37.72 Aligned_cols=26 Identities=35% Similarity=0.547 Sum_probs=22.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 67884999878777868899999986
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.++..+.|.||+|||||.|+++++.-
T Consensus 31 ~~Ge~~~i~G~sGsGKSTLlk~i~gl 56 (225)
T PRK10247 31 RAGEFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 59969999999999999999999646
No 291
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.03 E-value=0.0082 Score=37.20 Aligned_cols=31 Identities=32% Similarity=0.499 Sum_probs=26.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 9998787778688999999862762013567
Q gi|254780567|r 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIA 97 (246)
Q Consensus 67 l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~ 97 (246)
++|.|||||||+..++.++++++...++...
T Consensus 3 iillG~PGsGKgTqa~~la~~~~~~~is~Gd 33 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHISTGD 33 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCEEECHHH
T ss_conf 9998999998799999999986991786889
No 292
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.02 E-value=0.0028 Score=40.09 Aligned_cols=24 Identities=46% Similarity=0.663 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 999878777868899999986276
Q gi|254780567|r 67 VILVGPSGSGKSCLANIWSDKSRS 90 (246)
Q Consensus 67 l~i~G~~GsGKTHLl~a~~~~~~~ 90 (246)
+=|.|++|||||++++.+++...+
T Consensus 2 IgIaG~SgSGKTT~a~~L~~~l~~ 25 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 899898977899999999999846
No 293
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.00 E-value=0.0065 Score=37.83 Aligned_cols=26 Identities=42% Similarity=0.386 Sum_probs=22.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 67884999878777868899999986
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.++..+-|.||+|||||.|+++++.-
T Consensus 29 ~~Ge~~~iiG~sGsGKSTLl~~i~Gl 54 (228)
T cd03257 29 KKGETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 69989999999998699999999728
No 294
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=96.00 E-value=0.0062 Score=37.92 Aligned_cols=47 Identities=21% Similarity=0.226 Sum_probs=33.2
Q ss_pred CCCCCCCEEEC-CCHHHHHH-----HHHHHHCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 66884541653-61899999-----9985101678849998787778688999
Q gi|254780567|r 36 LGISRDDLLVH-SAIEQAVR-----LIDSWPSWPSRVVILVGPSGSGKSCLAN 82 (246)
Q Consensus 36 ~~~~~dnFiv~-~~N~~A~~-----~i~~~~~~~~~~l~i~G~~GsGKTHLl~ 82 (246)
..|.||..|-. .+++..|+ +++...++.+-.++-||..||||||-+.
T Consensus 45 ~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~l~G~n~ti~aYGqTGSGKTyTm~ 97 (328)
T cd00106 45 KSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYNGTIFAYGQTGSGKTYTMF 97 (328)
T ss_pred CEEECCEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEC
T ss_conf 17765867798999899999988999999968886699996899998540745
No 295
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=95.99 E-value=0.0066 Score=37.79 Aligned_cols=43 Identities=23% Similarity=0.380 Sum_probs=30.4
Q ss_pred EECCCHHHHHHHHHHHHC---------------------CCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 653618999999985101---------------------6788499987877786889999998
Q gi|254780567|r 44 LVHSAIEQAVRLIDSWPS---------------------WPSRVVILVGPSGSGKSCLANIWSD 86 (246)
Q Consensus 44 iv~~~N~~A~~~i~~~~~---------------------~~~~~l~i~G~~GsGKTHLl~a~~~ 86 (246)
+.|+.-+.|+.++++=.. .++..+.|-||+|||||.|++.++.
T Consensus 13 vfg~~~~~a~~~~~~g~~k~ei~~~tg~~vAv~dVsl~I~~GEi~~ivG~SGsGKSTLlr~i~g 76 (400)
T PRK10070 13 IFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNR 76 (400)
T ss_pred ECCCCHHHHHHHHHCCCCHHHHHHHHCCEEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 3298989999998769998999986499998974076887999999999998469999999975
No 296
>TIGR01187 potA polyamine ABC transporter, ATP-binding protein; InterPro: IPR005893 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family comprises the spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belongs to the larger ATP-Binding Cassette (ABC) transporter superfamily. Polyamines like spermidine and putrescine play a vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).; GO: 0015417 polyamine-transporting ATPase activity, 0015846 polyamine transport, 0016020 membrane.
Probab=95.98 E-value=0.0036 Score=39.40 Aligned_cols=18 Identities=44% Similarity=0.853 Sum_probs=15.7
Q ss_pred EECCCCCCHHHHHHHHHH
Q ss_conf 987877786889999998
Q gi|254780567|r 69 LVGPSGSGKSCLANIWSD 86 (246)
Q Consensus 69 i~G~~GsGKTHLl~a~~~ 86 (246)
|-||||||||.||.-+|-
T Consensus 1 LLGpSGcGKTTlLrlLAG 18 (331)
T TIGR01187 1 LLGPSGCGKTTLLRLLAG 18 (331)
T ss_pred CCCCCCCCHHHHHHHHHC
T ss_conf 978888747999999834
No 297
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=95.98 E-value=0.13 Score=29.77 Aligned_cols=178 Identities=16% Similarity=0.252 Sum_probs=100.7
Q ss_pred EEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC----HHH--HHHHHHHHH---------H--
Q ss_conf 16536189999999851016788499987877786889999998627620----135--676444546---------6--
Q gi|254780567|r 43 LLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTR----FSN--IAKSLDSIL---------I-- 105 (246)
Q Consensus 43 Fiv~~~N~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~----~~~--~~~~~~~~~---------~-- 105 (246)
+..+++=+.-+..++....+ .-++++.|++|+||-+|++++-+.+.+.. +.+ +...+.... .
T Consensus 316 ~~~d~s~a~l~rk~~rv~~~-~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga 394 (606)
T COG3284 316 PLLDPSRATLLRKAERVAAT-DLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGA 394 (606)
T ss_pred CCCCHHHHHHHHHHHHHHHC-CCCEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCC
T ss_conf 45578899999999887624-78768538765568999999985365569837998503447764677744576564330
Q ss_pred --H---------HHHHHHHHHHHCCCCC-CHHHHHHHHHHHC---------CCCCEEEEECCCCCCH---HHHHHHHHHH
Q ss_conf --6---------6665334332100376-1033545554311---------2342156403543200---2234566788
Q gi|254780567|r 106 --D---------TRKPVLLEDIDLLDFN-DTQLFHIINSIHQ---------YDSSLLMTARTFPVSW---GVCLPDLCSR 161 (246)
Q Consensus 106 --~---------~~~~i~iddi~~~~~~-ee~lf~l~n~~~~---------~~~~iilts~~~p~~~---~~~l~DL~SR 161 (246)
. .-..+.+|.+--++.. |-.|++.+..-.- -.-++|-++..+-..+ .-+.+||-=|
T Consensus 395 ~~kG~~g~~~~A~gGtlFldeIgd~p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~~lv~~g~fredLyyr 474 (606)
T COG3284 395 RRKGYKGKLEQADGGTLFLDEIGDMPLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLAQLVEQGRFREDLYYR 474 (606)
T ss_pred HHCCCCCCCEECCCCCCHHHHHHHCHHHHHHHHHHHHHHCCEECCCCCCEEEEEEEEECCCCCHHHHHHCCCCHHHHHHH
T ss_conf 01066554101578760898761141899999999986182523588521577999834675799998759714878887
Q ss_pred HHHCCEEEECCCCH-----HHHHHHHHHHHHHCCCCCCHHHHHHH-HHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 52122245078897-----89999999986662897988999999-9406679899999999999999
Q gi|254780567|r 162 LKAATVVKISLPDD-----DFLEKVIVKMFADRQIFIDKKLAAYI-VQRMERSLVFAEKLVDKMDNLA 223 (246)
Q Consensus 162 l~~g~~~~I~~pdd-----e~~~~il~k~~~~r~i~l~~~v~~yl-~~r~~Rs~~~l~~~l~~Ld~~s 223 (246)
|.. .+++++|+-+ ..+..++.++.. ..+.|++++..-| +-|.+.+.+.+.++++.+-..|
T Consensus 475 L~~-~~i~lP~lr~R~d~~~~l~~~~~~~~~-~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~ 540 (606)
T COG3284 475 LNA-FVITLPPLRERSDRIPLLDRILKREND-WRLQLDDDALARLLAYRWPGNIRELDNVIERLAALS 540 (606)
T ss_pred HCC-EEECCCCHHCCCCCHHHHHHHHHHCCC-CCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
T ss_conf 447-155068611046657899999987268-775689999999985789982899999999998707
No 298
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=95.95 E-value=0.0067 Score=37.72 Aligned_cols=48 Identities=21% Similarity=0.126 Sum_probs=33.1
Q ss_pred CCCCCCCCEEECC-CHHHHHH-----HHHHHHCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 7668845416536-1899999-----9985101678849998787778688999
Q gi|254780567|r 35 CLGISRDDLLVHS-AIEQAVR-----LIDSWPSWPSRVVILVGPSGSGKSCLAN 82 (246)
Q Consensus 35 ~~~~~~dnFiv~~-~N~~A~~-----~i~~~~~~~~~~l~i~G~~GsGKTHLl~ 82 (246)
...|.||-.|-.. +++..|+ +++...++-+-.++-||..||||||-+.
T Consensus 50 ~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~l~G~n~ti~aYGqTGSGKTyTm~ 103 (322)
T cd01367 50 KHTFRFDYVFDEAVTNEEVYRSTVKPLIPHVFEGGVATCFAYGQTGSGKTYTML 103 (322)
T ss_pred CCEEECCEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEC
T ss_conf 845657756499999899999998999999868987489994268888726842
No 299
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.95 E-value=0.05 Score=32.37 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=20.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 7884999878777868899999986
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
-...+.++||.|+||+-++..+++.
T Consensus 20 l~HA~L~~Gp~G~Gk~~~A~~~A~~ 44 (325)
T PRK08699 20 RPNAWLFVGKKGTGKTAFARFAAKA 44 (325)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 0117975799997899999999999
No 300
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein; InterPro: IPR005666 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). These proteins are involved in the transmembrane transport of sulphate and thiosulphate.; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016020 membrane.
Probab=95.95 E-value=0.0062 Score=37.93 Aligned_cols=24 Identities=46% Similarity=0.733 Sum_probs=20.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 788499987877786889999998
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSD 86 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~ 86 (246)
.++.+-|-||+|||||.|+++++-
T Consensus 25 ~G~lvaLLGPSGSGKsTLLR~iAG 48 (241)
T TIGR00968 25 TGSLVALLGPSGSGKSTLLRVIAG 48 (241)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHC
T ss_conf 852798546898737899999835
No 301
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=95.95 E-value=0.0074 Score=37.47 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=21.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 7884999878777868899999986
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
++..+-|+||+|||||.|+++++--
T Consensus 23 ~g~i~~l~GpsGaGKTTLl~~iaGl 47 (352)
T PRK11144 23 AQGITAIFGRSGAGKTSLINLISGL 47 (352)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 9989999999996299999999768
No 302
>pfam06309 Torsin Torsin. This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterized by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of (pfam00004) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia.
Probab=95.94 E-value=0.014 Score=35.70 Aligned_cols=48 Identities=23% Similarity=0.309 Sum_probs=30.4
Q ss_pred CCCEEECCC--HHHHHHHHHHHHC--CCCCEEE--EECCCCCCHHHHHHHHHHH
Q ss_conf 454165361--8999999985101--6788499--9878777868899999986
Q gi|254780567|r 40 RDDLLVHSA--IEQAVRLIDSWPS--WPSRVVI--LVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 40 ~dnFiv~~~--N~~A~~~i~~~~~--~~~~~l~--i~G~~GsGKTHLl~a~~~~ 87 (246)
++.-+.|.- .+..++++..... .|.+||+ ++|++|+||||+++.+++.
T Consensus 23 L~~~lfGQhla~~~v~~al~~~l~~~~p~KpLVlSfHG~tGtGKn~vs~liA~~ 76 (127)
T pfam06309 23 LARRLFGQHLVKQLVVRSVKGHWENPKPRKPLVLSFHGWTGTGKNFVAEIIADN 76 (127)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 987534779899999999999974899999748870189998798999999999
No 303
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.94 E-value=0.015 Score=35.66 Aligned_cols=105 Identities=17% Similarity=0.118 Sum_probs=48.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHCCCCCEE
Q ss_conf 4999878777868899999986276201356764445466666653343321003761----033545554311234215
Q gi|254780567|r 66 VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND----TQLFHIINSIHQYDSSLL 141 (246)
Q Consensus 66 ~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iddi~~~~~~e----e~lf~l~n~~~~~~~~ii 141 (246)
.+||.|-||||||.|++++.+...........+.-+. + +.....+...-..+. ..+-.+-..+..++. ++
T Consensus 1 ViW~tGLsgsGKTTlA~~l~~~L~~~~~~~~~lDGD~--i---R~~l~~~lgys~~~R~~n~~r~~~lak~l~~qg~-~V 74 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDN--V---RHGLNKDLGFSREDREENIRRIAEVAKLLADAGL-IV 74 (149)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHH--H---HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-EE
T ss_conf 9898799999999999999999998699759977488--9---9773655598878899999999999999983798-27
Q ss_pred EEECCCCCCHHHHHHHHHHHHHH--CCEEEECCCCHHHH
Q ss_conf 64035432002234566788521--22245078897899
Q gi|254780567|r 142 MTARTFPVSWGVCLPDLCSRLKA--ATVVKISLPDDDFL 178 (246)
Q Consensus 142 lts~~~p~~~~~~l~DL~SRl~~--g~~~~I~~pdde~~ 178 (246)
+.|...|..- .....+.++.. ..-+-|..|=++..
T Consensus 75 Ivs~isp~~~--~R~~~r~~i~~~~y~eIyl~~~le~~~ 111 (149)
T cd02027 75 IAAFISPYRE--DREAARKIIGGGDFLEVFVDTPLEVCE 111 (149)
T ss_pred EEECCCCCHH--HHHHHHHHCCCCCEEEEEECCCHHHHH
T ss_conf 8841678899--999999874777669999718789998
No 304
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.92 E-value=0.0074 Score=37.47 Aligned_cols=25 Identities=32% Similarity=0.618 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 7884999878777868899999986
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.+..+.|.||+|||||.|++.++.-
T Consensus 26 ~Ge~~~ilGpSG~GKSTllr~i~gl 50 (242)
T cd03295 26 KGEFLVLIGPSGSGKTTTMKMINRL 50 (242)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 9989999999995699999999759
No 305
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.91 E-value=0.0078 Score=37.32 Aligned_cols=26 Identities=35% Similarity=0.592 Sum_probs=22.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 67884999878777868899999986
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.++..+.|.||+|||||.|+++++.-
T Consensus 24 ~~Ge~~~iiG~SGsGKSTll~~i~gL 49 (235)
T cd03261 24 RRGEILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 79989999999997299999999759
No 306
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=95.91 E-value=0.0074 Score=37.46 Aligned_cols=26 Identities=42% Similarity=0.612 Sum_probs=22.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 67884999878777868899999986
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.++..+-|.||+|||||.|+++++.-
T Consensus 26 ~~GE~~~llGpSGsGKSTLlr~iaGL 51 (352)
T PRK10851 26 PSGQMVALLGPSGSGKTTLLRIIAGL 51 (352)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 99989999999984699999999769
No 307
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=95.90 E-value=0.0069 Score=37.64 Aligned_cols=48 Identities=23% Similarity=0.234 Sum_probs=31.7
Q ss_pred CCCCCCCCEEECC-CHHHHHH-----HHHHHHCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 7668845416536-1899999-----9985101678849998787778688999
Q gi|254780567|r 35 CLGISRDDLLVHS-AIEQAVR-----LIDSWPSWPSRVVILVGPSGSGKSCLAN 82 (246)
Q Consensus 35 ~~~~~~dnFiv~~-~N~~A~~-----~i~~~~~~~~~~l~i~G~~GsGKTHLl~ 82 (246)
...|+||..|-.. +++..|+ ++....++-+-.++-||..||||||-+.
T Consensus 53 ~~~f~FD~vf~~~~tQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTGSGKTyTm~ 106 (338)
T cd01370 53 ELKYSFDRVFDETSTQEEVYENTTKPLVDGVLNGYNATVFAYGATGAGKTHTML 106 (338)
T ss_pred CEEEECCCEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEC
T ss_conf 717764635099999899999998999999858875589994899999897857
No 308
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.90 E-value=0.0078 Score=37.33 Aligned_cols=26 Identities=46% Similarity=0.579 Sum_probs=22.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 67884999878777868899999986
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.++..+-|.||+|||||.|+++++.-
T Consensus 28 ~~Ge~~~iiGpsGsGKSTLl~~i~Gl 53 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 79989999999995799999999759
No 309
>PRK12289 ribosome-associated GTPase; Reviewed
Probab=95.89 E-value=0.0085 Score=37.10 Aligned_cols=47 Identities=21% Similarity=0.321 Sum_probs=32.2
Q ss_pred CCCCEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 8454165361899999998510167884999878777868899999986
Q gi|254780567|r 39 SRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 39 ~~dnFiv~~~N~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
+.+-++++..+...++.+..+.. ++..++.|++|+|||.|++++...
T Consensus 148 GY~~i~iS~~~~~gl~~L~~~L~--~k~tv~~G~SGVGKSSLIN~L~p~ 194 (351)
T PRK12289 148 GYQPLFISVEQGIGLEALLKQLR--NKITVVAGPSGVGKSSLINRLIPD 194 (351)
T ss_pred CCCEEEEECCCCCCHHHHHHHHC--CCEEEEECCCCCCHHHHHHHHCCC
T ss_conf 98289996789968999999875--986999817988788988763741
No 310
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.89 E-value=0.0087 Score=37.04 Aligned_cols=26 Identities=35% Similarity=0.551 Sum_probs=22.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 67884999878777868899999986
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.++..+.|.||+|||||.|++.++.-
T Consensus 24 ~~Ge~~~iiG~SGsGKSTll~~i~gL 49 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRL 49 (227)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 79989999999998199999999744
No 311
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=95.88 E-value=0.0071 Score=37.56 Aligned_cols=193 Identities=16% Similarity=0.197 Sum_probs=98.7
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCHHH-----H-H---HHHH---HHHCC-----------------CCCEEEEECCCCCC
Q ss_conf 34155888776688454165361899-----9-9---9998---51016-----------------78849998787778
Q gi|254780567|r 26 EQLFFSFPRCLGISRDDLLVHSAIEQ-----A-V---RLID---SWPSW-----------------PSRVVILVGPSGSG 76 (246)
Q Consensus 26 ~Ql~l~~~~~~~~~~dnFiv~~~N~~-----A-~---~~i~---~~~~~-----------------~~~~l~i~G~~GsG 76 (246)
+.-.+|-|..-+..+|+|+||.-... | | +-|. +-.+. ..+.+.|-||.|||
T Consensus 85 ~~~~lP~P~eik~~LD~YVIGQe~AKKVLsVAVYNHYKRl~~~~~n~~~d~~D~nvelehleeVEL~KSNILLiGPTGSG 164 (452)
T TIGR00382 85 ELSELPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNLKEKNKKSDNGDSNVELEHLEEVELSKSNILLIGPTGSG 164 (452)
T ss_pred HHHCCCCCHHHHHHHCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCC
T ss_conf 65247882799997213612310105254324112466653243045558840002354444433300662454688852
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHH----------------------HHHHHHHHHHHHHHHHCCCCC------------
Q ss_conf 6889999998627620135676444----------------------546666665334332100376------------
Q gi|254780567|r 77 KSCLANIWSDKSRSTRFSNIAKSLD----------------------SILIDTRKPVLLEDIDLLDFN------------ 122 (246)
Q Consensus 77 KTHLl~a~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~i~iddi~~~~~~------------ 122 (246)
||=|++-+|+..+-=+--+.+..+. +.......++-||.++.+...
T Consensus 165 KTLLAqTLA~~L~VPfAiADATtLTEAGYVGEDVENIL~~Llq~ad~DV~kA~kGIiYIDEIDKIaRkSEN~SITRDVSG 244 (452)
T TIGR00382 165 KTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKIARKSENPSITRDVSG 244 (452)
T ss_pred HHHHHHHHHHHCCCCEEECCHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHCCCEEEEECCCCHHHHCCCCEEEEEECC
T ss_conf 68999999987388742111110200664242288999999874145524527850898422310121577801122175
Q ss_pred ---CHHHH-------------------------------------------HHHHHHHCCCCCEEEEECCCCCCHHHHHH
Q ss_conf ---10335-------------------------------------------45554311234215640354320022345
Q gi|254780567|r 123 ---DTQLF-------------------------------------------HIINSIHQYDSSLLMTARTFPVSWGVCLP 156 (246)
Q Consensus 123 ---ee~lf-------------------------------------------~l~n~~~~~~~~iilts~~~p~~~~~~l~ 156 (246)
|++|+ .++......+..+=|+.........-...
T Consensus 245 EGVQQALLKi~EGTvA~vPPqGGRKHP~~~~iqiDTs~ILFICGGAF~GL~~iI~~R~~~~~~iGF~~~~~~~~~~~~~~ 324 (452)
T TIGR00382 245 EGVQQALLKIIEGTVANVPPQGGRKHPQQEFIQIDTSNILFICGGAFVGLEKIIKKRTEKKSSIGFGAEVKKKSKEKSEE 324 (452)
T ss_pred CHHHHHHHHHHHCCEEEECCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 54999999876032343175448868865768864764001105434448999988745553335455210045787899
Q ss_pred HHHHH------HHHC----------CEEEECCCCHHHHHHHHHH-------HHH----HC--CCCCCHHHHHHHHHCCC-
Q ss_conf 66788------5212----------2245078897899999999-------866----62--89798899999994066-
Q gi|254780567|r 157 DLCSR------LKAA----------TVVKISLPDDDFLEKVIVK-------MFA----DR--QIFIDKKLAAYIVQRME- 206 (246)
Q Consensus 157 DL~SR------l~~g----------~~~~I~~pdde~~~~il~k-------~~~----~r--~i~l~~~v~~yl~~r~~- 206 (246)
++-+. ++.| .+..++++|.|.+..||.+ +.. .. .+...+|++.-||+.-=
T Consensus 325 ~~L~~v~~~DL~kFGLIPEfIGRLPV~a~L~~L~~eAL~~IL~~PkNAlvKQY~~lf~ld~VeL~F~~eAl~~IA~~A~~ 404 (452)
T TIGR00382 325 ELLRQVEPEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKLDNVELEFEEEALKAIAKKALE 404 (452)
T ss_pred HHHHHHCHHHHHHHCCCCCCCCCCCCEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 99975171112210555101105340202787887899998525444488999997164561134558889999999985
Q ss_pred --CCHHHHHHHHHH
Q ss_conf --798999999999
Q gi|254780567|r 207 --RSLVFAEKLVDK 218 (246)
Q Consensus 207 --Rs~~~l~~~l~~ 218 (246)
.-.|.|+++++.
T Consensus 405 RkTGARGLRsI~E~ 418 (452)
T TIGR00382 405 RKTGARGLRSIVEG 418 (452)
T ss_pred CCCCCCHHHHHHHH
T ss_conf 07675157899999
No 312
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11; InterPro: IPR014155 This entry contains VirB11, a protein that is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer . VirB11 is believed to be an ATPase and is a homologue of the P-like conjugation system TrbB protein and the Flp pilus system protein TadA ..
Probab=95.88 E-value=0.014 Score=35.79 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=23.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 788499987877786889999998627
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDKSR 89 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~~~ 89 (246)
..+.++|.|+.|||||.+++++.+..-
T Consensus 157 ~~knIii~GGTgSGKTTf~kal~~~IP 183 (328)
T TIGR02788 157 SRKNIIISGGTGSGKTTFLKALVKEIP 183 (328)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHCCC
T ss_conf 389199990689718999999973276
No 313
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.87 E-value=0.039 Score=33.02 Aligned_cols=95 Identities=18% Similarity=0.224 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHCCCC-CEEEEECCCCCCHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-CC
Q ss_conf 8999999985101678-8499987877786889999998627-----620135676444546666665334332100-37
Q gi|254780567|r 49 IEQAVRLIDSWPSWPS-RVVILVGPSGSGKSCLANIWSDKSR-----STRFSNIAKSLDSILIDTRKPVLLEDIDLL-DF 121 (246)
Q Consensus 49 N~~A~~~i~~~~~~~~-~~l~i~G~~GsGKTHLl~a~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~iddi~~~-~~ 121 (246)
--.+++.+-.....|. +..-||||++||||+|+-.++.++. +.|++.. ..++....... -+..+.+-.. +.
T Consensus 39 Gs~~lD~alg~GGiP~GRivei~G~essGKTtlal~~ia~aQk~gg~~~~iDaE-~a~d~~~a~~l-GVD~~~l~~~qp~ 116 (325)
T cd00983 39 GSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAE-HALDPVYAKKL-GVDLDNLLISQPD 116 (325)
T ss_pred CCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHH-HCCCHHHHHHC-CCCHHHEEEECCC
T ss_conf 819999997589966880899988987779999999999987359839999625-42598999980-9984675896663
Q ss_pred CCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 610335455543112342156403
Q gi|254780567|r 122 NDTQLFHIINSIHQYDSSLLMTAR 145 (246)
Q Consensus 122 ~ee~lf~l~n~~~~~~~~iilts~ 145 (246)
.-|+.+.++..+..++..-++.-|
T Consensus 117 ~~Eq~l~i~~~li~s~~~dliViD 140 (325)
T cd00983 117 TGEQALEIADSLVRSGAVDLIVVD 140 (325)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 899999999997515887679981
No 314
>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=95.84 E-value=0.0087 Score=37.02 Aligned_cols=27 Identities=30% Similarity=0.522 Sum_probs=22.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 788499987877786889999998627
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDKSR 89 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~~~ 89 (246)
|--.+.+.||+|+|||.|+.++++...
T Consensus 2 p~~~~l~~GPsGvGKT~lAk~la~~l~ 28 (168)
T pfam07724 2 PIGSFLFLGPTGVGKTELAKALAELLF 28 (168)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 837999889899899999999999967
No 315
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.84 E-value=0.0075 Score=37.42 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 788499987877786889999998
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSD 86 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~ 86 (246)
++..+.|.||+|||||.|+++++.
T Consensus 30 ~Ge~~~ivG~SGsGKSTllr~i~g 53 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCING 53 (233)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 999999988980589999999967
No 316
>pfam07693 KAP_NTPase KAP family P-loop domain. The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side.
Probab=95.83 E-value=0.018 Score=35.11 Aligned_cols=24 Identities=38% Similarity=0.504 Sum_probs=19.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 849998787778688999999862
Q gi|254780567|r 65 RVVILVGPSGSGKSCLANIWSDKS 88 (246)
Q Consensus 65 ~~l~i~G~~GsGKTHLl~a~~~~~ 88 (246)
=.+-|+|+-|||||++++.|.++.
T Consensus 21 ~vIgl~G~WGsGKTs~l~~~~~~L 44 (301)
T pfam07693 21 FVIGLYGAWGSGKTSFLNLLEDEL 44 (301)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 799998989999999999999998
No 317
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=95.82 E-value=0.0086 Score=37.07 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=22.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 67884999878777868899999986
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.++..+-|-||+|||||.|+++++.-
T Consensus 41 ~~GE~~~llGpSGsGKSTLlr~iaGl 66 (378)
T PRK09452 41 NNGEFLTLLGPSGCGKTTVLRLIAGF 66 (378)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 99989999989997699999999769
No 318
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.82 E-value=0.0079 Score=37.27 Aligned_cols=26 Identities=35% Similarity=0.588 Sum_probs=22.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 67884999878777868899999986
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.++..+.|.||+|||||.|+++++.-
T Consensus 25 ~~Ge~v~i~G~sGsGKSTLl~~l~Gl 50 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHCCC
T ss_conf 89999999958999889999998698
No 319
>PRK13764 ATPase; Provisional
Probab=95.81 E-value=0.01 Score=36.55 Aligned_cols=46 Identities=20% Similarity=0.296 Sum_probs=30.9
Q ss_pred CCCCCCEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 68845416536189999999851016788499987877786889999998627
Q gi|254780567|r 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR 89 (246)
Q Consensus 37 ~~~~dnFiv~~~N~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~ 89 (246)
..++|||=.++. +.+++. .....++|.|+||+|||.++|+++..+.
T Consensus 239 ~~sledY~l~~~------l~~Rl~-~~a~GilIaG~PGaGKsTfaqalA~~~~ 284 (605)
T PRK13764 239 KLSLEDYNLSEK------LKERLE-ERAEGILIAGAPGAGKSTFAQALAEFYA 284 (605)
T ss_pred ECCHHHCCCCHH------HHHHHH-HCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 804777167899------999887-3366499977999977899999999998
No 320
>pfam01583 APS_kinase Adenylylsulphate kinase. Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif.
Probab=95.81 E-value=0.0081 Score=37.22 Aligned_cols=106 Identities=18% Similarity=0.095 Sum_probs=48.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-C---HHHHHHHHHHHCCCCCE
Q ss_conf 8499987877786889999998627620135676444546666665334332100376-1---03354555431123421
Q gi|254780567|r 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN-D---TQLFHIINSIHQYDSSL 140 (246)
Q Consensus 65 ~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iddi~~~~~~-e---e~lf~l~n~~~~~~~~i 140 (246)
-.+||.|-||||||.|++++.............+.-+. .+.....+...-..+ . ..+-++-..+..+| .+
T Consensus 3 ~viW~TGLsGsGKTTlA~~l~~~L~~~~~~~~~LDGD~-----~R~~l~~dlgys~~~R~~n~~r~~~lak~l~~~g-~~ 76 (157)
T pfam01583 3 CTVWFTGLSGSGKSTIANALERKLFAQGISVYVLDGDN-----VRHGLNKDLGFSEEDRTENIRRIAEVAKLFADAG-LI 76 (157)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHH-----HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC-CE
T ss_conf 89998898999999999999999997599779976887-----7501257779898999999999999999984289-65
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHH--CCEEEECCCCHHHH
Q ss_conf 564035432002234566788521--22245078897899
Q gi|254780567|r 141 LMTARTFPVSWGVCLPDLCSRLKA--ATVVKISLPDDDFL 178 (246)
Q Consensus 141 ilts~~~p~~~~~~l~DL~SRl~~--g~~~~I~~pdde~~ 178 (246)
++.|-..|..- .....+.++.. ..-+-|..|=+..+
T Consensus 77 VIvs~isp~~~--~R~~~r~~~~~~~y~EIyv~~~le~~~ 114 (157)
T pfam01583 77 VITSFISPYRA--DRDMARELHEDGKFIEVFVDTPLEVCE 114 (157)
T ss_pred EEEECCCCCHH--HHHHHHHHCCCCCEEEEEECCCHHHHH
T ss_conf 88721578999--999999864788579999638678877
No 321
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=95.81 E-value=0.0085 Score=37.10 Aligned_cols=26 Identities=38% Similarity=0.602 Sum_probs=22.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 67884999878777868899999986
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.++..+-|.||+|||||.|+++++.-
T Consensus 28 ~~Ge~~~llGpsG~GKTTllr~iaGl 53 (358)
T PRK11650 28 ADGEFIVLVGPSGCGKSTLLRMVAGL 53 (358)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 89989999999863699999999769
No 322
>pfam02562 PhoH PhoH-like protein. PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation.
Probab=95.81 E-value=0.016 Score=35.44 Aligned_cols=32 Identities=31% Similarity=0.479 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 9999999851016788499987877786889999998
Q gi|254780567|r 50 EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 (246)
Q Consensus 50 ~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~ 86 (246)
+.+++++.+ ...+++.||+|+|||+|+-+.+-
T Consensus 10 ~~~~~~l~~-----~~iv~~~GpAGtGKT~la~~~al 41 (205)
T pfam02562 10 KRYVEAIRK-----NDIVFGIGPAGTGKTYLAVAAAV 41 (205)
T ss_pred HHHHHHHHC-----CCEEEEECCCCCCHHHHHHHHHH
T ss_conf 999999717-----98079989998609999999999
No 323
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=95.81 E-value=0.0055 Score=38.27 Aligned_cols=50 Identities=20% Similarity=0.205 Sum_probs=33.9
Q ss_pred CCCCCCCCCCEEEC-CCHHHHHH-----HHHHHHCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 87766884541653-61899999-----9985101678849998787778688999
Q gi|254780567|r 33 PRCLGISRDDLLVH-SAIEQAVR-----LIDSWPSWPSRVVILVGPSGSGKSCLAN 82 (246)
Q Consensus 33 ~~~~~~~~dnFiv~-~~N~~A~~-----~i~~~~~~~~~~l~i~G~~GsGKTHLl~ 82 (246)
.-...|+||..|-. .+++..|+ +++...++-+-.++-||..||||||-+.
T Consensus 37 ~~~~~f~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~n~ti~aYGqTGSGKTyTm~ 92 (341)
T cd01372 37 GTDKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNATVLAYGQTGSGKTYTMG 92 (341)
T ss_pred CCCCEEECCEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC
T ss_conf 89826876977599999899999998999999867775169997147889864413
No 324
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.81 E-value=0.066 Score=31.61 Aligned_cols=22 Identities=41% Similarity=0.564 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 9998787778688999999862
Q gi|254780567|r 67 VILVGPSGSGKSCLANIWSDKS 88 (246)
Q Consensus 67 l~i~G~~GsGKTHLl~a~~~~~ 88 (246)
++|+|-||||||.+++.++++.
T Consensus 2 ivl~GlP~SGKSt~a~~L~~~l 23 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELSKKL 23 (249)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 7896789998999999999999
No 325
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=95.81 E-value=0.0086 Score=37.05 Aligned_cols=26 Identities=38% Similarity=0.629 Sum_probs=22.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 67884999878777868899999986
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.++..+.|.||+|||||.|++.++.-
T Consensus 27 ~~Ge~~~llGpsG~GKSTllr~i~Gl 52 (369)
T PRK11000 27 HEGEFVVFVGPSGCGKSTLLRMIAGL 52 (369)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 79989999999973699999999779
No 326
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.80 E-value=0.0089 Score=36.96 Aligned_cols=53 Identities=28% Similarity=0.266 Sum_probs=35.4
Q ss_pred CCCCCCCCEEECCC-HHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 76688454165361-8999999985101678849998787778688999999862
Q gi|254780567|r 35 CLGISRDDLLVHSA-IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS 88 (246)
Q Consensus 35 ~~~~~~dnFiv~~~-N~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~ 88 (246)
...++.++|+.... ......++..... ....+++.|+.|||||.|++++..+.
T Consensus 115 ~~~~tl~dlv~~g~~t~~~~~~L~~aV~-~r~nilVsGgTGSGKTTllnaL~~~i 168 (323)
T PRK13833 115 SRLIPLDDYVRSKVMTEAQASTIRSAIS-SRLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred CCCCCHHHHHHCCCCCHHHHHHHHHHHH-CCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9999999998769999999999999998-18968999177775689999999864
No 327
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; InterPro: IPR012699 Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds , including phosphites as well as phosphonates. PhnN in Escherichia coli shows considerable homology to guanylate kinases (2.7.4.8 from EC), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP..
Probab=95.79 E-value=0.014 Score=35.73 Aligned_cols=132 Identities=20% Similarity=0.246 Sum_probs=74.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCC--------CHHHH--HH--HHHHHHHHHHHHHHHHHHHCCCCCCHHHH----
Q ss_conf 8849998787778688999999862762--------01356--76--44454666666533433210037610335----
Q gi|254780567|r 64 SRVVILVGPSGSGKSCLANIWSDKSRST--------RFSNI--AK--SLDSILIDTRKPVLLEDIDLLDFNDTQLF---- 127 (246)
Q Consensus 64 ~~~l~i~G~~GsGKTHLl~a~~~~~~~~--------~~~~~--~~--~~~~~~~~~~~~i~iddi~~~~~~ee~lf---- 127 (246)
+..+++-||||+||=.|+.......... +++-. +- +........+..-..+....+.|.-.-|-
T Consensus 1 G~li~vvGPSGaGKDtLl~~AR~~l~~~~r~~F~rRvITR~a~AggEnH~Als~~EF~~~~~~G~FAl~W~AHGL~YGiP 80 (183)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPADAGGENHDALSTEEFDAREDGGAFALSWQAHGLSYGIP 80 (183)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCC
T ss_conf 93789970778867789999999704899658831277437522466764047789999971898189861367435783
Q ss_pred HHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCC
Q ss_conf 45554311234215640354320022345667885212224507889789999999986662897988999999940667
Q gi|254780567|r 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER 207 (246)
Q Consensus 128 ~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~R 207 (246)
--+|.-...|.-+|+=++.. .+|.++.|+...+++.|..+.|-+...+.++ + .|-.+-|.+|+.|
T Consensus 81 ~eid~wL~~G~~Vv~NGSRa------~Lp~ar~rYp~L~~V~Ita~~dVLa~RL~~R-----g----RE~~~~I~~RL~R 145 (183)
T TIGR02322 81 VEIDQWLEAGDVVVVNGSRA------VLPEARQRYPNLLVVNITASPDVLAQRLAAR-----G----RESAEEIEERLAR 145 (183)
T ss_pred HHHHHHHHCCCEEEEECHHH------HHHHHHHHHHCCEEEEEECCHHHHHHHHHHH-----C----CCCHHHHHHHHHH
T ss_conf 03787875499899975288------9999987432460278745812899999975-----8----9898899999887
Q ss_pred CHH
Q ss_conf 989
Q gi|254780567|r 208 SLV 210 (246)
Q Consensus 208 s~~ 210 (246)
+-.
T Consensus 146 s~~ 148 (183)
T TIGR02322 146 SAR 148 (183)
T ss_pred HHH
T ss_conf 753
No 328
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.013 Score=35.92 Aligned_cols=35 Identities=37% Similarity=0.551 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 189999999851016788499987877786889999
Q gi|254780567|r 48 AIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI 83 (246)
Q Consensus 48 ~N~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a 83 (246)
..+.|..+++-... .+..++++||||||||-|++-
T Consensus 183 GQ~~AKrAleiAAA-GgHnLl~~GpPGtGKTmla~R 217 (490)
T COG0606 183 GQEQAKRALEIAAA-GGHNLLLVGPPGTGKTMLASR 217 (490)
T ss_pred CCHHHHHHHHHHHH-CCCCEEEECCCCCCHHHHHHH
T ss_conf 84999999999984-388678756998865676423
No 329
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein; InterPro: IPR012693 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.; GO: 0005524 ATP binding, 0015416 phosphonate transmembrane-transporting ATPase activity, 0015716 phosphonate transport, 0016020 membrane.
Probab=95.78 E-value=0.0076 Score=37.39 Aligned_cols=25 Identities=40% Similarity=0.651 Sum_probs=21.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 6788499987877786889999998
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSD 86 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~ 86 (246)
.|+-.+-|-||||+|||.||+.+..
T Consensus 26 ~~GE~~~~IG~SGAGKSTLLR~iNr 50 (253)
T TIGR02315 26 NPGEFVAVIGPSGAGKSTLLRCINR 50 (253)
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 1651799973788726799987753
No 330
>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.
Probab=95.78 E-value=0.0059 Score=38.09 Aligned_cols=89 Identities=21% Similarity=0.316 Sum_probs=52.2
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHH-------HHHHHHH--HCCCCCEEEEECCCCCC
Q ss_conf 21012686500023534810341558887766884541653618999-------9999851--01678849998787778
Q gi|254780567|r 6 EDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQA-------VRLIDSW--PSWPSRVVILVGPSGSG 76 (246)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~Ql~l~~~~~~~~~~dnFiv~~~N~~A-------~~~i~~~--~~~~~~~l~i~G~~GsG 76 (246)
.+.+|-..++--...|.+.. .+.||=| +-..+-|+-.+.|-+... ...+.+. .=.++..+-|-||||||
T Consensus 291 Ar~ay~Rl~~ll~~~p~~~~-~m~LP~P-~G~L~vE~v~~~PP~~~~WsqPivPk~~l~gi~F~~~aGe~laIIGPSgSG 368 (556)
T TIGR01842 291 ARQAYKRLNELLAEYPSRAE-AMALPEP-EGHLSVENVTIVPPGGKKWSQPIVPKPTLRGISFAIQAGEALAIIGPSGSG 368 (556)
T ss_pred HHHHHHHHHHHHHHCCCCCC-CCCCCCC-CCEEEEEEEEEECCCCCCCCCCCCCHHHHCCCCEEECCCCEEEEECCCCCC
T ss_conf 99999999999985788875-4578898-636888776510786313578977614227862156377458887478652
Q ss_pred HHHHHHH----HHHHHCCCCHHHH
Q ss_conf 6889999----9986276201356
Q gi|254780567|r 77 KSCLANI----WSDKSRSTRFSNI 96 (246)
Q Consensus 77 KTHLl~a----~~~~~~~~~~~~~ 96 (246)
||.|++. |....+.+-++..
T Consensus 369 KStLaR~~vG~W~~~~G~VRLDGa 392 (556)
T TIGR01842 369 KSTLARILVGIWPPASGSVRLDGA 392 (556)
T ss_pred HHHHHHHHHHCCCCCCCCEEEEHH
T ss_conf 588987887210135653364033
No 331
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=95.78 E-value=0.0068 Score=37.70 Aligned_cols=54 Identities=15% Similarity=0.105 Sum_probs=34.6
Q ss_pred CCCCCCCCCCCCCCEEECC-CHHHHHHH-----HHHHHCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 5588877668845416536-18999999-----985101678849998787778688999
Q gi|254780567|r 29 FFSFPRCLGISRDDLLVHS-AIEQAVRL-----IDSWPSWPSRVVILVGPSGSGKSCLAN 82 (246)
Q Consensus 29 ~l~~~~~~~~~~dnFiv~~-~N~~A~~~-----i~~~~~~~~~~l~i~G~~GsGKTHLl~ 82 (246)
...-+-+..|+||-.|-.. +++..|+. ++...++-+-.++-||..||||||-+.
T Consensus 34 ~~~~~~~~~f~FD~Vf~~~~tQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTGSGKTyTm~ 93 (337)
T cd01373 34 VWHSHPPRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYNGSIFAYGQTGSGKTYTMM 93 (337)
T ss_pred EEECCCCCEEECCEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEE
T ss_conf 961899967669815499999899999986989999858884489974478888617985
No 332
>TIGR00618 sbcc exonuclease SbcC; InterPro: IPR004592 All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. SbcC may have nuclease activity that is functionally related to one of the nuclease activities of the RecBCD enzyme (IPR004586 from INTERPRO).; GO: 0004527 exonuclease activity, 0006259 DNA metabolic process.
Probab=95.78 E-value=0.0084 Score=37.12 Aligned_cols=25 Identities=20% Similarity=0.482 Sum_probs=21.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 7884999878777868899999986
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
..+.++|+|+.|+|||.|+-|||-.
T Consensus 29 sl~~f~i~G~tGAGKtsLldAI~yA 53 (1063)
T TIGR00618 29 SLKLFVICGKTGAGKTSLLDAITYA 53 (1063)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 2573677788998354599999998
No 333
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.78 E-value=0.011 Score=36.45 Aligned_cols=26 Identities=19% Similarity=0.396 Sum_probs=22.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 67884999878777868899999986
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.++..+.|.||.|+|||.|+++++..
T Consensus 35 ~~Ge~~~l~GpNGaGKTTLlr~l~Gl 60 (214)
T PRK13543 35 DAGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 18989999999998799999999769
No 334
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=95.77 E-value=0.0098 Score=36.71 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=23.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 678849998787778688999999862
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDKS 88 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~~ 88 (246)
.++..+-|.|++|||||.|+++++...
T Consensus 25 ~~Ge~~~IvG~sGsGKSTLl~~l~g~~ 51 (218)
T cd03290 25 PTGQLTMIVGQVGCGKSSLLLAILGEM 51 (218)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 699999999999980999999985556
No 335
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=95.76 E-value=0.01 Score=36.58 Aligned_cols=26 Identities=31% Similarity=0.507 Sum_probs=22.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 67884999878777868899999986
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.++..+.|.||.|||||.|+++++.-
T Consensus 24 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl 49 (201)
T cd03231 24 AAGEALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 79959999999999999999999667
No 336
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=95.76 E-value=0.0099 Score=36.69 Aligned_cols=26 Identities=35% Similarity=0.500 Sum_probs=22.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 67884999878777868899999986
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.++..+-|.||+|||||.|+++++--
T Consensus 33 ~~GE~v~iiG~sGsGKSTLl~~i~Gl 58 (233)
T PRK11629 33 GEGEMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 89989999999994099999999669
No 337
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=95.75 E-value=0.0076 Score=37.39 Aligned_cols=47 Identities=17% Similarity=0.157 Sum_probs=33.3
Q ss_pred CCCCCCCEEECCC-HHHHHH-----HHHHHHCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 6688454165361-899999-----9985101678849998787778688999
Q gi|254780567|r 36 LGISRDDLLVHSA-IEQAVR-----LIDSWPSWPSRVVILVGPSGSGKSCLAN 82 (246)
Q Consensus 36 ~~~~~dnFiv~~~-N~~A~~-----~i~~~~~~~~~~l~i~G~~GsGKTHLl~ 82 (246)
..|+||..|-..+ ++..|+ ++....++-+-.++-||..||||||-+.
T Consensus 47 ~~f~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G~n~ti~aYGqTGSGKTyTm~ 99 (319)
T cd01376 47 KKYQFDAFYGTECTQEDIFSREVKPIVPHLLSGQNATVFAYGSTGAGKTHTML 99 (319)
T ss_pred EEEECCEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEC
T ss_conf 46664867189999899998865999999868985599996789998746853
No 338
>KOG0060 consensus
Probab=95.75 E-value=0.0095 Score=36.80 Aligned_cols=25 Identities=28% Similarity=0.612 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 7884999878777868899999986
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.+..+.|+||+|||||.|+++++.-
T Consensus 460 ~g~~LLItG~sG~GKtSLlRvlggL 484 (659)
T KOG0060 460 SGQNLLITGPSGCGKTSLLRVLGGL 484 (659)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 8975999789987636899998532
No 339
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.74 E-value=0.0099 Score=36.69 Aligned_cols=25 Identities=36% Similarity=0.606 Sum_probs=22.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 7884999878777868899999986
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
++....|.||+|||||.|++++|.-
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHC
T ss_conf 8854887678876688999999813
No 340
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=95.73 E-value=0.0099 Score=36.68 Aligned_cols=26 Identities=35% Similarity=0.552 Sum_probs=22.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 67884999878777868899999986
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.++..+-|-||+|||||.|+++++..
T Consensus 31 ~~Ge~~~ilGpnGsGKSTLl~~i~G~ 56 (226)
T cd03234 31 ESGQVMAILGSSGSGKTTLLDAISGR 56 (226)
T ss_pred ECCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 18809999989996099999999678
No 341
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=95.69 E-value=0.01 Score=36.60 Aligned_cols=26 Identities=38% Similarity=0.505 Sum_probs=22.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 67884999878777868899999986
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.++..+-|.||+|||||.|+++++.-
T Consensus 34 ~~GE~v~ivG~sGsGKSTLl~~i~Gl 59 (228)
T PRK10584 34 KRGETIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 99989999999985899999999669
No 342
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=95.69 E-value=0.0076 Score=37.40 Aligned_cols=47 Identities=17% Similarity=0.208 Sum_probs=32.4
Q ss_pred CCCCCCEEECCCHHHHHHH-----HHHHHCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 6884541653618999999-----9851016788499987877786889999
Q gi|254780567|r 37 GISRDDLLVHSAIEQAVRL-----IDSWPSWPSRVVILVGPSGSGKSCLANI 83 (246)
Q Consensus 37 ~~~~dnFiv~~~N~~A~~~-----i~~~~~~~~~~l~i~G~~GsGKTHLl~a 83 (246)
.|+||..|-..+++..|+. +....++-+-.++-||..||||||-+.-
T Consensus 49 ~F~Fd~Vf~~~tQ~evy~~~~~plv~~~l~G~n~ti~aYGqTGSGKTyTm~G 100 (334)
T cd01375 49 SFKFDGVFHNASQEEVYETVAKPVVDSALDGYNGTIFAYGQTGAGKTFTMTG 100 (334)
T ss_pred EEECCEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECC
T ss_conf 7777867799998999999989999998588725799713568997588137
No 343
>TIGR01618 phage_P_loop phage nucleotide-binding protein; InterPro: IPR006505 These sequences represent an uncharacterised family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of these proteins is unknown..
Probab=95.68 E-value=0.013 Score=35.98 Aligned_cols=150 Identities=18% Similarity=0.275 Sum_probs=79.0
Q ss_pred HHHCCCCCEEEEECCCCCCHHHHHHHHHHHH--------CCC--------C-------------HHHHHHHHHHHHHHHH
Q ss_conf 5101678849998787778688999999862--------762--------0-------------1356764445466666
Q gi|254780567|r 58 SWPSWPSRVVILVGPSGSGKSCLANIWSDKS--------RST--------R-------------FSNIAKSLDSILIDTR 108 (246)
Q Consensus 58 ~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~--------~~~--------~-------------~~~~~~~~~~~~~~~~ 108 (246)
+.+..++...+|||.+|.|||.+..-+.-+. ..+ . +...+..........+
T Consensus 7 ~i~~~~~~~~lIYG~~G~GKTS~~K~l~GktL~l~~D~SSkVL~G~~nvdiim~~~d~~~~~~~~~e~~~~~~~~~~~~Y 86 (229)
T TIGR01618 7 EIKRSEYFRYLIYGKPGLGKTSTIKYLPGKTLVLSLDKSSKVLAGDENVDIIMADLDDEKPIQEMVEFYKELQNIQAEEY 86 (229)
T ss_pred CCCCCCCCEEEEECCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCHHHCC
T ss_conf 66567663688875898872305664588789883678644346899833899860699847899999999732253457
Q ss_pred HHHHHHHHHCCCC-----------C------------CHHHHHHHHHHHC-CCCCEEEEECCCCCCHHH--------HHH
Q ss_conf 6533433210037-----------6------------1033545554311-234215640354320022--------345
Q gi|254780567|r 109 KPVLLEDIDLLDF-----------N------------DTQLFHIINSIHQ-YDSSLLMTARTFPVSWGV--------CLP 156 (246)
Q Consensus 109 ~~i~iddi~~~~~-----------~------------ee~lf~l~n~~~~-~~~~iilts~~~p~~~~~--------~l~ 156 (246)
+.+++|++..+.. + +.+|..++--+.+ .++.+++|+-..-.++.. ..|
T Consensus 87 ~niViDNis~lq~~~L~~~gr~~K~~~~p~~q~Y~~~~~~~~d~~~vl~~l~~~~i~~tAwe~~~~~~~e~G~iy~ry~p 166 (229)
T TIGR01618 87 DNIVIDNISELQKLWLINLGREAKNGRSPELQHYQKLDLYFLDLLTVLKELKNKNIYVTAWEDTNQLSLESGQIYNRYLP 166 (229)
T ss_pred CEEEEECHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 65898142789999998468442457886500036888999999999985589879998765667534011466876667
Q ss_pred HHHHH-----HHHCCE-EEE-CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCC-CCHHHHHHH
Q ss_conf 66788-----521222-450-788978999999998666289798899999994066-798999999
Q gi|254780567|r 157 DLCSR-----LKAATV-VKI-SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME-RSLVFAEKL 215 (246)
Q Consensus 157 DL~SR-----l~~g~~-~~I-~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~-Rs~~~l~~~ 215 (246)
|++.. ++-.-+ .+| ..|.+.. -.-||+-|.++.-.|-=+|+. |.+-.++.+
T Consensus 167 dir~kvlN~~lgl~DvVaRl~~~~~tG~--------eevRg~~L~~~~G~yAKNrLD~R~~~k~eeL 225 (229)
T TIGR01618 167 DIREKVLNAFLGLTDVVARLVKNAKTGE--------EEVRGFILDPSKGNYAKNRLDNRKLCKVEEL 225 (229)
T ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCCH--------HHCCCEEECCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 7547887655033323456765688881--------1313235559987212110268402102222
No 344
>KOG3347 consensus
Probab=95.67 E-value=0.023 Score=34.38 Aligned_cols=38 Identities=21% Similarity=0.297 Sum_probs=30.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 84999878777868899999986276201356764445
Q gi|254780567|r 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 (246)
Q Consensus 65 ~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~ 102 (246)
..+.+.|-||+|||.|+..++...+-.++......-..
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn 45 (176)
T KOG3347 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKEN 45 (176)
T ss_pred CCEEEECCCCCCCHHHHHHHHHHHCCCEEEHHHHHHHH
T ss_conf 88798679998802599999997398567455677661
No 345
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.66 E-value=0.011 Score=36.31 Aligned_cols=27 Identities=48% Similarity=0.576 Sum_probs=22.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 678849998787778688999999862
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDKS 88 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~~ 88 (246)
.++..+.|.|++|||||.|++.+..-.
T Consensus 26 ~~Ge~i~IvG~sGsGKSTLl~ll~gl~ 52 (234)
T cd03251 26 PAGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 799999999899982999999996676
No 346
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.65 E-value=0.026 Score=34.12 Aligned_cols=22 Identities=41% Similarity=0.613 Sum_probs=17.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHH
Q ss_conf 8849998787778688999999
Q gi|254780567|r 64 SRVVILVGPSGSGKSCLANIWS 85 (246)
Q Consensus 64 ~~~l~i~G~~GsGKTHLl~a~~ 85 (246)
.+.+.+.||.|+|||..+.=+|
T Consensus 210 ~~vvalVGPTGVGKTTTiAKLA 231 (412)
T PRK05703 210 GGVVALVGPTGVGKTTTLAKLA 231 (412)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
T ss_conf 7369998888875676999999
No 347
>PRK13808 adenylate kinase; Provisional
Probab=95.65 E-value=0.18 Score=28.92 Aligned_cols=119 Identities=20% Similarity=0.278 Sum_probs=62.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HHHH---HHHHHHHCCCCCCHHHHHHHHHHHCC-CC--
Q ss_conf 49998787778688999999862762013567644454666-6665---33433210037610335455543112-34--
Q gi|254780567|r 66 VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID-TRKP---VLLEDIDLLDFNDTQLFHIINSIHQY-DS-- 138 (246)
Q Consensus 66 ~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~---i~iddi~~~~~~ee~lf~l~n~~~~~-~~-- 138 (246)
-++|.||||+||..-+..++++++-..++..+..-...... .... -+++.=.+. ..+.+..++-..... .+
T Consensus 2 rIIlLGPPGsGKGTQA~~L~~~~gi~hISTGDmLR~aI~~~T~LG~kaK~im~~G~LV--PDeIVi~lI~erL~~~d~~~ 79 (297)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLV--PDEVVVGIISDRIEQPDAAN 79 (297)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEECHHHHHHHHHHCCCHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHCCCCCCC
T ss_conf 5999789999858999999998698867586999999975998799999999766988--88999999999966856678
Q ss_pred CEEEEECCCCCCHHH--HHHH-HHHH-HHHCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 215640354320022--3456-6788-521222450788978999999998666
Q gi|254780567|r 139 SLLMTARTFPVSWGV--CLPD-LCSR-LKAATVVKISLPDDDFLEKVIVKMFAD 188 (246)
Q Consensus 139 ~iilts~~~p~~~~~--~l~D-L~SR-l~~g~~~~I~~pdde~~~~il~k~~~~ 188 (246)
..|| |--|..+.- .+.. |..+ +..-.|++|..+|+.+...|..+.+..
T Consensus 80 GfIL--DGFPRTv~QAEaLD~~L~~~g~~LD~VIel~Vdd~~Lv~RI~~R~~e~ 131 (297)
T PRK13808 80 GFIL--DGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEM 131 (297)
T ss_pred CEEE--ECCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHH
T ss_conf 9872--289999899999999998189997868997678899999999888877
No 348
>pfam02367 UPF0079 Uncharacterized P-loop hydrolase UPF0079. This uncharacterized family contains a P-loop.
Probab=95.65 E-value=0.029 Score=33.81 Aligned_cols=39 Identities=23% Similarity=0.272 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 99999998510167884999878777868899999986276
Q gi|254780567|r 50 EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS 90 (246)
Q Consensus 50 ~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~ 90 (246)
++|..+.+..+ ++..+++.|+-|+|||++.+.+++..+.
T Consensus 3 ~lg~~ia~~l~--~G~vi~L~G~LGaGKTtfvr~i~~~lg~ 41 (123)
T pfam02367 3 NLGKRLAQLLK--AGDVVLLSGDLGAGKTTFVRGLAKGLGI 41 (123)
T ss_pred HHHHHHHHHCC--CCCEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 99999997689--9979999888778899999999998599
No 349
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.63 E-value=0.011 Score=36.45 Aligned_cols=26 Identities=38% Similarity=0.511 Sum_probs=22.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 67884999878777868899999986
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.++..+-|.|++|||||.|++++...
T Consensus 25 ~~Ge~v~ivG~sGsGKSTLl~ll~gl 50 (236)
T cd03253 25 PAGKKVAIVGPSGSGKSTILRLLFRF 50 (236)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHCCC
T ss_conf 69999999999999899999997438
No 350
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=95.62 E-value=0.057 Score=31.99 Aligned_cols=76 Identities=17% Similarity=0.177 Sum_probs=43.8
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 78777868899999986276201356764445466666653343321003761033545554311234215640354
Q gi|254780567|r 71 GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTF 147 (246)
Q Consensus 71 G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iddi~~~~~~ee~lf~l~n~~~~~~~~iilts~~~ 147 (246)
|-+|||||....+++.+.++.|+.............-..-+=+.|.+...| -+.+=...-.....++..|++|+.-
T Consensus 2 GVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~KM~~GiPL~DdDR~pW-L~~l~~~~~~~~~~~~~~vi~CSAL 77 (161)
T COG3265 2 GVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIEKMSAGIPLNDDDRWPW-LEALGDAAASLAQKNKHVVIACSAL 77 (161)
T ss_pred CCCCCCHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHCCCCCCCCHHHHH-HHHHHHHHHHHHCCCCCEEEECHHH
T ss_conf 877657779999999980982333565699889998727998984112479-9999999998642798169962788
No 351
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.61 E-value=0.0088 Score=37.00 Aligned_cols=117 Identities=15% Similarity=0.131 Sum_probs=57.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH---HHHHHHHHHH-------HHHHHCCCCCCH------HH
Q ss_conf 7884999878777868899999986276201356764445---4666666533-------433210037610------33
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS---ILIDTRKPVL-------LEDIDLLDFNDT------QL 126 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~-------iddi~~~~~~ee------~l 126 (246)
.+..++|.||+|+|||.|++.+.+..+-.+.-+.+..... ..-..+.++. ++.-.++.|.+- ..
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYGT~ 82 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYGTS 82 (191)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCEEEECCHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf 86399998998888899999998634937999852679999875780247577999999875687478877719732486
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHH
Q ss_conf 54555431123421564035432002234566788521222450788978999999998
Q gi|254780567|r 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 (246)
Q Consensus 127 f~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~ 185 (246)
-.-+......|+.+++--+ |... .-.+..+.-+..+=|.||+.+.+..-|...
T Consensus 83 ~~~ve~~~~~G~~vildId-----~qGa-~qvk~~~p~~v~IFi~pPs~eeL~~RL~~R 135 (191)
T COG0194 83 REPVEQALAEGKDVILDID-----VQGA-LQVKKKMPNAVSIFILPPSLEELERRLKGR 135 (191)
T ss_pred HHHHHHHHHCCCEEEEEEE-----HHHH-HHHHHHCCCEEEEEECCCCHHHHHHHHHCC
T ss_conf 8899999866990899985-----3999-999974999699997599999999999715
No 352
>pfam00225 Kinesin Kinesin motor domain.
Probab=95.61 E-value=0.0079 Score=37.29 Aligned_cols=48 Identities=21% Similarity=0.180 Sum_probs=32.1
Q ss_pred CCCCCCCCEEECCC-HHHHHH-----HHHHHHCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 76688454165361-899999-----9985101678849998787778688999
Q gi|254780567|r 35 CLGISRDDLLVHSA-IEQAVR-----LIDSWPSWPSRVVILVGPSGSGKSCLAN 82 (246)
Q Consensus 35 ~~~~~~dnFiv~~~-N~~A~~-----~i~~~~~~~~~~l~i~G~~GsGKTHLl~ 82 (246)
...|.||..|-.++ ++..|+ +++...++.+-.++-||+.||||||-+.
T Consensus 39 ~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~ti~aYGqTGSGKTyTm~ 92 (321)
T pfam00225 39 EKTFTFDRVFDPEATQEFVYEETAKPLVESVLEGYNVTIFAYGQTGSGKTYTME 92 (321)
T ss_pred CEEEECCEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEC
T ss_conf 608766857798999899999998999999968873799997999998416526
No 353
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.60 E-value=0.013 Score=35.95 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=21.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 7884999878777868899999986
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
++..+-|.||+|||||.|++.++.-
T Consensus 34 ~Ge~vaiiG~sGsGKSTLl~ll~Gl 58 (269)
T PRK13648 34 KGQWTSIVGHNGSGKSTIAKLMIGI 58 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 9989999999999799999999649
No 354
>PRK13768 GTPase; Provisional
Probab=95.60 E-value=0.0059 Score=38.08 Aligned_cols=24 Identities=38% Similarity=0.603 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 499987877786889999998627
Q gi|254780567|r 66 VVILVGPSGSGKSCLANIWSDKSR 89 (246)
Q Consensus 66 ~l~i~G~~GsGKTHLl~a~~~~~~ 89 (246)
.+++.||+|||||.+++++.+...
T Consensus 4 ~~~ViGpaGSGKsT~~~~l~~~l~ 27 (253)
T PRK13768 4 IVFFLGTAGSGKTTLVGALSDWLE 27 (253)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899989999988999999999999
No 355
>PRK10419 nikE nickel transporter ATP-binding protein; Provisional
Probab=95.60 E-value=0.012 Score=36.15 Aligned_cols=27 Identities=37% Similarity=0.444 Sum_probs=22.8
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 167884999878777868899999986
Q gi|254780567|r 61 SWPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 61 ~~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
=.++..+-|.|++|||||.|+++++.-
T Consensus 35 i~~GE~l~ivGeSGsGKSTL~r~i~gl 61 (266)
T PRK10419 35 LKSGETVALLGRSGCGKSTLARLLVGL 61 (266)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 889989999999997799999999669
No 356
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter; InterPro: IPR005897 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family contains ABC-type bacteriocin transporter. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. Peptide bacteriocins are exported across the cytoplasmic membrane by a dedicated ATP-binding cassette (ABC) transporter. These ABC-transporters have an N-terminal peptidase domain that belong to MEROPS peptidase family C39 (clan CA); a central multi-pass transmembrane region and a C-terminal ABC transporter domain. These transporters have dual function: (i) they remove the N-terminal leader peptide from its bacteriocin precursor by cleavage at a Gly-Gly bond and (ii) transport the mature bacteriocin across the cytoplasmic membrane. This represents a novel strategy for secretion of bacterial proteins . Many bacteria are known to regulate diverse physiological processes through this system, such as bioluminescence, regulation of sporulation, virulence factor expression, antibiotics production, competence for genetic transformation, and activation of biofilm formation .; GO: 0008234 cysteine-type peptidase activity, 0019534 toxin transporter activity, 0006810 transport, 0016020 membrane.
Probab=95.57 E-value=0.012 Score=36.07 Aligned_cols=70 Identities=19% Similarity=0.140 Sum_probs=45.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 268650002353481034155888776---68845416536189999999851016788499987877786889999998
Q gi|254780567|r 10 FFVPDKQKNDQPKNKEEQLFFSFPRCL---GISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 (246)
Q Consensus 10 ~~~~~~~~~~~~~~~~~Ql~l~~~~~~---~~~~dnFiv~~~N~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~ 86 (246)
|.++...+...++....++-.|+..+. +|++-+=+.++=+ ..=..+..+-|.|++|||||.|++-+.+
T Consensus 452 YLV~SEF~~~~~~t~~~~lngdi~~~~~sy~YG~g~~~L~di~---------L~I~~n~k~tiVGmSGSGKsTLaKLLV~ 522 (710)
T TIGR01193 452 YLVDSEFEKKKKITELENLNGDIVVNDVSYSYGYGSNVLSDIS---------LTIKKNEKITIVGMSGSGKSTLAKLLVG 522 (710)
T ss_pred EECCHHHCCCCCCCHHHCCCCCEEEEEEEEECCCCCCCCCCCE---------EEEECCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 4012010056400220157765467434664478873202642---------3650785489973679748999987520
Q ss_pred HH
Q ss_conf 62
Q gi|254780567|r 87 KS 88 (246)
Q Consensus 87 ~~ 88 (246)
-+
T Consensus 523 Ff 524 (710)
T TIGR01193 523 FF 524 (710)
T ss_pred CC
T ss_conf 35
No 357
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein; InterPro: IPR013505 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). FtsE is an ABC transporter ATP-binding protein. This protein and its permease partner FtsX, localize to the cell division site. In a number of species, the ftsEX gene pair is located next to ftsY, which encodes the signal recognition particle-docki ng protein.; GO: 0005524 ATP binding, 0051301 cell division.
Probab=95.57 E-value=0.014 Score=35.77 Aligned_cols=25 Identities=40% Similarity=0.547 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 7884999878777868899999986
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
++..+||.|+||+|||.+++-++..
T Consensus 28 kGem~fL~GHSGaGKST~lkLi~~~ 52 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTLLKLILGI 52 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 8507998568886078999999852
No 358
>pfam00485 PRK Phosphoribulokinase / Uridine kinase family. In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain.
Probab=95.57 E-value=0.011 Score=36.51 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=21.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 99987877786889999998627620
Q gi|254780567|r 67 VILVGPSGSGKSCLANIWSDKSRSTR 92 (246)
Q Consensus 67 l~i~G~~GsGKTHLl~a~~~~~~~~~ 92 (246)
+-|.|++|||||.+++.+++..+...
T Consensus 2 IgIaG~SgSGKTT~a~~L~~~l~~~~ 27 (196)
T pfam00485 2 IGVAGSSGAGKTTVARTFVSIFGREG 27 (196)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 89989985719999999999966058
No 359
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ; InterPro: IPR013364 Proteins in this entry are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase (IPR013363 from INTERPRO) of a type-IV secretion-like system of the obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii..
Probab=95.56 E-value=0.0099 Score=36.70 Aligned_cols=27 Identities=33% Similarity=0.405 Sum_probs=22.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 499987877786889999998627620
Q gi|254780567|r 66 VVILVGPSGSGKSCLANIWSDKSRSTR 92 (246)
Q Consensus 66 ~l~i~G~~GsGKTHLl~a~~~~~~~~~ 92 (246)
--+|||+.|||||.|+.++-+++...+
T Consensus 151 LGLiCG~TGSGKSTl~AaiY~~~l~t~ 177 (374)
T TIGR02525 151 LGLICGETGSGKSTLAAAIYRHCLETY 177 (374)
T ss_pred CEEECCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 802217789728999999999850748
No 360
>TIGR02237 recomb_radB DNA repair and recombination protein RadB; InterPro: IPR011939 This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO) and DMC1 (IPR011940 from INTERPRO), and archaeal RadA (IPR011938 from INTERPRO) ,, .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=95.56 E-value=0.007 Score=37.62 Aligned_cols=61 Identities=10% Similarity=-0.000 Sum_probs=32.9
Q ss_pred HHHHHHHHHHCCCCCEEEEE----CCCC----CCHHHHHHHHHHHHHHCCEEEECCCCH-HHHHHHHHHHHH
Q ss_conf 33545554311234215640----3543----200223456678852122245078897-899999999866
Q gi|254780567|r 125 QLFHIINSIHQYDSSLLMTA----RTFP----VSWGVCLPDLCSRLKAATVVKISLPDD-DFLEKVIVKMFA 187 (246)
Q Consensus 125 ~lf~l~n~~~~~~~~iilts----~~~p----~~~~~~l~DL~SRl~~g~~~~I~~pdd-e~~~~il~k~~~ 187 (246)
+|.+|..-+...+-.+|+|= +..- ...++...-|. -.+..+++|+..++ ..|.++|.||-.
T Consensus 137 Ql~~Ll~lArk~~~AVviTNQvy~d~~~gG~~~~~P~GG~~L~--h~~K~i~rLE~~~r~G~R~a~L~kHR~ 206 (223)
T TIGR02237 137 QLTLLLSLARKKDLAVVITNQVYTDVNNGGSETLRPLGGHLLE--HWSKVILRLEKLNRVGRRKATLEKHRS 206 (223)
T ss_pred HHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCEEEECCCHHHH--HHHCEEEEEECCCCCCCEEEEEEECCC
T ss_conf 9999999987649978997115886377973201003311343--110213356447898742456654055
No 361
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.56 E-value=0.014 Score=35.68 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=18.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 78849998787778688999999
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWS 85 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~ 85 (246)
++....|+|+||+|||+|+.-++
T Consensus 22 ~G~itei~G~pG~GKTtl~lq~a 44 (224)
T PRK09361 22 RGTITQIYGPPGSGKTNICIQLA 44 (224)
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
T ss_conf 88799998999985999999999
No 362
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=95.55 E-value=0.015 Score=35.57 Aligned_cols=35 Identities=23% Similarity=0.161 Sum_probs=26.5
Q ss_pred CHHHHHHH-----HHHHHCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 18999999-----985101678849998787778688999
Q gi|254780567|r 48 AIEQAVRL-----IDSWPSWPSRVVILVGPSGSGKSCLAN 82 (246)
Q Consensus 48 ~N~~A~~~-----i~~~~~~~~~~l~i~G~~GsGKTHLl~ 82 (246)
+++..|.. +....++-+-.+|-||..||||||-+.
T Consensus 68 tQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTGSGKTyTm~ 107 (356)
T cd01365 68 SQEDVFEDLGRELLDHAFEGYNVCLFAYGQTGSGKSYTMM 107 (356)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEC
T ss_conf 8999999998999999978985799987889998376862
No 363
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=95.55 E-value=0.014 Score=35.71 Aligned_cols=25 Identities=24% Similarity=0.488 Sum_probs=20.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 7884999878777868899999986
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
..+.+.|+||.|+|||.|+-|+|-.
T Consensus 29 ~~gLFlI~G~TGAGKSTIlDAItfA 53 (1047)
T PRK10246 29 SNGLFAITGPTGAGKTTLLDAICLA 53 (1047)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 6887888899999889999999999
No 364
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=95.54 E-value=0.0099 Score=36.69 Aligned_cols=48 Identities=13% Similarity=0.108 Sum_probs=32.7
Q ss_pred CCCCCCCCEEECCC-HHHHHH-----HHHHHHCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 76688454165361-899999-----9985101678849998787778688999
Q gi|254780567|r 35 CLGISRDDLLVHSA-IEQAVR-----LIDSWPSWPSRVVILVGPSGSGKSCLAN 82 (246)
Q Consensus 35 ~~~~~~dnFiv~~~-N~~A~~-----~i~~~~~~~~~~l~i~G~~GsGKTHLl~ 82 (246)
...|.||--|-..+ ++..|+ +++...++-+-.++-||..||||||-+.
T Consensus 39 ~~~f~Fd~vf~~~~tQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTGSGKTyTm~ 92 (321)
T cd01374 39 GQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNGTIFAYGQTSSGKTFTMS 92 (321)
T ss_pred CCEEECCEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEECC
T ss_conf 845664857498999899999988999999858973479962688999835747
No 365
>PRK13948 shikimate kinase; Provisional
Probab=95.52 E-value=0.018 Score=35.16 Aligned_cols=35 Identities=26% Similarity=0.191 Sum_probs=29.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHH
Q ss_conf 67884999878777868899999986276201356
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNI 96 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~ 96 (246)
.|...++|.|..|||||++.+.+++..+..+++..
T Consensus 8 ~~~~~IvLIG~mGsGKStiGk~LA~~l~~~fiD~D 42 (182)
T PRK13948 8 RPATFVALAGFMGTGKSRIGWELSRALALHFVDTD 42 (182)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEECH
T ss_conf 99981898899999889999999999695988884
No 366
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein; InterPro: IPR011924 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents LolD, a member of the ABC transporter family. LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on the residue immediately following the modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. Excluded from this entry are homologs from the archaeal genus Methanosarcina .; GO: 0005524 ATP binding, 0006810 transport, 0016020 membrane.
Probab=95.51 E-value=0.012 Score=36.25 Aligned_cols=24 Identities=42% Similarity=0.670 Sum_probs=20.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 788499987877786889999998
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSD 86 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~ 86 (246)
++-.+.|.|.+|||||.|||.+.-
T Consensus 30 ~GE~~~IvG~SGSGKSTLLHlLGG 53 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGG 53 (221)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 663379873678716899998730
No 367
>KOG0242 consensus
Probab=95.51 E-value=0.0092 Score=36.87 Aligned_cols=50 Identities=18% Similarity=0.037 Sum_probs=37.0
Q ss_pred CCCCCCCCEEECCC-HHHHHHH-----HHHHHCCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 76688454165361-8999999-----98510167884999878777868899999
Q gi|254780567|r 35 CLGISRDDLLVHSA-IEQAVRL-----IDSWPSWPSRVVILVGPSGSGKSCLANIW 84 (246)
Q Consensus 35 ~~~~~~dnFiv~~~-N~~A~~~-----i~~~~~~~~~~l~i~G~~GsGKTHLl~a~ 84 (246)
...|.||.+|-.+| |+..|+. +.....+-+.-+|=||..||||||-+...
T Consensus 52 ~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l~G~N~TVFAYG~TgSGKTyTM~G~ 107 (675)
T KOG0242 52 PEKYEFDRVFGEESTQEDVYERTTKPLLLSVLEGFNATVFAYGQTGSGKTYTMSGS 107 (675)
T ss_pred CCCEEEEEECCCCCCHHHHHHHCCHHHHHHHHCCCCCCEEEECCCCCCCCEEEECC
T ss_conf 64125200448998878898740078899974686652564237889875477515
No 368
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.51 E-value=0.014 Score=35.74 Aligned_cols=27 Identities=41% Similarity=0.596 Sum_probs=23.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 678849998787778688999999862
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDKS 88 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~~ 88 (246)
.++..+-|.||+|||||.|++.++...
T Consensus 26 ~~G~~vaIvG~sGsGKSTLl~ll~gl~ 52 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 599999999999980999999996666
No 369
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.51 E-value=0.014 Score=35.73 Aligned_cols=27 Identities=37% Similarity=0.619 Sum_probs=23.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 678849998787778688999999862
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDKS 88 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~~ 88 (246)
.++..+.|.|++|||||.|++.++...
T Consensus 27 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 53 (229)
T cd03254 27 KPGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 799999999999980999999996686
No 370
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.50 E-value=0.015 Score=35.62 Aligned_cols=26 Identities=31% Similarity=0.532 Sum_probs=22.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 67884999878777868899999986
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.++..+.|.||.|+|||.|+++++.-
T Consensus 25 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl 50 (204)
T PRK13538 25 NAGELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 79989999999998599999999768
No 371
>PRK00098 ribosome-associated GTPase; Reviewed
Probab=95.50 E-value=0.013 Score=35.93 Aligned_cols=47 Identities=26% Similarity=0.316 Sum_probs=33.0
Q ss_pred CCCCEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 8454165361899999998510167884999878777868899999986
Q gi|254780567|r 39 SRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 39 ~~dnFiv~~~N~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
+..-|.++..+....+.+..+. .++..++.|++|+|||.|++++..+
T Consensus 141 gy~v~~~S~~~~~g~~~L~~~l--~~k~sv~~G~SGVGKSSLiN~L~~~ 187 (298)
T PRK00098 141 GYDVLELSAKEGPGLDELKPLL--AGKVTVLAGQSGVGKSTLLNALVPE 187 (298)
T ss_pred CCCEEEEECCCCCCHHHHHHHH--CCCEEEEECCCCCCHHHHHHHHCCH
T ss_conf 9978999689998999999985--7986999878988788888760714
No 372
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.50 E-value=0.013 Score=35.87 Aligned_cols=25 Identities=52% Similarity=0.721 Sum_probs=21.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 7884999878777868899999986
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
++..+-|-||+|||||.|+++++.-
T Consensus 29 ~Ge~~~iiG~sGsGKTTll~~i~Gl 53 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 9989999999998699999999669
No 373
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=95.50 E-value=0.016 Score=35.35 Aligned_cols=49 Identities=20% Similarity=0.327 Sum_probs=32.1
Q ss_pred CCCCEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 84541653618999999985101678849998787778688999999862
Q gi|254780567|r 39 SRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS 88 (246)
Q Consensus 39 ~~dnFiv~~~N~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~ 88 (246)
...+|-....++.+.+-+ ++.-.|+..+-|.||+|||||.|++.++..+
T Consensus 317 ~~~~f~Y~~~~~~vL~~i-sl~I~~Ge~vaIVG~SGsGKSTLl~LL~g~y 365 (569)
T PRK10789 317 NIRQFCYPQTDHPALENV-NFTLKPGQMLGICGPTGSGKSTLLSLIQRHF 365 (569)
T ss_pred EEEEEECCCCCCCHHCCC-CCEECCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987885489984223076-5688899789987999998799999999776
No 374
>TIGR00017 cmk cytidylate kinase; InterPro: IPR003136 This family consists of cytidylate kinase (2.7.4.14 from EC), which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors .; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=95.50 E-value=0.017 Score=35.23 Aligned_cols=117 Identities=21% Similarity=0.221 Sum_probs=60.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----CCCCCEE
Q ss_conf 99987877786889999998627620135676444546666665334332100376103354555431-----1234215
Q gi|254780567|r 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIH-----QYDSSLL 141 (246)
Q Consensus 67 l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iddi~~~~~~ee~lf~l~n~~~-----~~~~~ii 141 (246)
+-|=||+|+|||.+++.++.+-+-.|+++....=........ -....++ -.+|+.|..++++.- ..+..-+
T Consensus 5 IAIDGPs~aGKStvak~~A~~L~y~yldsG~mYR~~a~~~qr--sL~~~~d--~~~E~~L~~L~~~~di~f~~~~~~~~v 80 (223)
T TIGR00017 5 IAIDGPSGAGKSTVAKAVAEKLGYKYLDSGAMYRALALAAQR--SLQNRVD--LTDEDALLELISQLDIRFIPTAGEVKV 80 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHH--HHHCCCC--CCCHHHHHHHHHHCCCEEECCCCCEEE
T ss_conf 762377646557899999986295021443289999999998--8740688--568488999986326044215775068
Q ss_pred EEECCCCCC-H-HHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHH--CCCCC
Q ss_conf 640354320-0-2234566788521222450788978999999998666--28979
Q gi|254780567|r 142 MTARTFPVS-W-GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD--RQIFI 193 (246)
Q Consensus 142 lts~~~p~~-~-~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~--r~i~l 193 (246)
+.-....++ + +-...++.|-.+....+. +.+....++.... .|+-+
T Consensus 81 ~~nG~DV~~~I~t~~v~~~aS~~A~~~~vR------~~~~~~Qq~~~~~sd~g~v~ 130 (223)
T TIGR00017 81 FLNGEDVSEAIRTQEVANLASKVAAFPKVR------EILLKRQQKLAKNSDDGIVA 130 (223)
T ss_pred EECCCCHHHHCCCHHHHHHHHHHHCCHHHH------HHHHHHHHHHHHHCCCCEEE
T ss_conf 870777132206835899999872377799------99999999987515897588
No 375
>pfam00406 ADK Adenylate kinase.
Probab=95.49 E-value=0.053 Score=32.18 Aligned_cols=114 Identities=19% Similarity=0.215 Sum_probs=55.4
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HHHHHHHHHH-CCCCCCHHHHHHHHHHHC---CCCCEEEE
Q ss_conf 987877786889999998627620135676444546666-6653343321-003761033545554311---23421564
Q gi|254780567|r 69 LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT-RKPVLLEDID-LLDFNDTQLFHIINSIHQ---YDSSLLMT 143 (246)
Q Consensus 69 i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~iddi~-~~~~~ee~lf~l~n~~~~---~~~~iilt 143 (246)
|.|||||||+..+..++++++-.+++.....-....... ....+-+.+. +.--.++....++..... ..+.+|+
T Consensus 1 i~G~PGsGKgTqa~~La~~~~~~~is~GdllR~~~~~~s~~g~~i~~~i~~G~lvpd~i~~~l~~~~l~~~~~~~g~iL- 79 (186)
T pfam00406 1 LLGPPGAGKGTQAERIVQKYGIVHLSTGDLLRAEVKSGTELGKEAKEYMDKGELVPDEVVVGLVKERLEQNDCKNGFLL- 79 (186)
T ss_pred CCCCCCCCHHHHHHHHHHHHCCEEECHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCEEE-
T ss_conf 9188989859999999998599067699999999862887999999999869954309999999999707455486687-
Q ss_pred ECCCCCCHHHHHHHHHHHHH----HCCEEEECCCCHHHHHHHHHHH
Q ss_conf 03543200223456678852----1222450788978999999998
Q gi|254780567|r 144 ARTFPVSWGVCLPDLCSRLK----AATVVKISLPDDDFLEKVIVKM 185 (246)
Q Consensus 144 s~~~p~~~~~~l~DL~SRl~----~g~~~~I~~pdde~~~~il~k~ 185 (246)
+.-|....- ...|...+. --.++.++-|++.....+..+.
T Consensus 80 -DGfPRt~~Q-a~~l~~~l~~~~~~~~Vi~l~~~~~~~~~Rl~~R~ 123 (186)
T pfam00406 80 -DGFPRTVPQ-AEALEEMLEYGIKLDYVIEFDVPDEVLVERLTGRR 123 (186)
T ss_pred -ECCCCCHHH-HHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHCCC
T ss_conf -379898999-99999999749987779999737899999997664
No 376
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.49 E-value=0.014 Score=35.81 Aligned_cols=27 Identities=30% Similarity=0.572 Sum_probs=23.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 678849998787778688999999862
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDKS 88 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~~ 88 (246)
.++..+.|-||+|||||.|+++++...
T Consensus 31 ~~Gei~~llG~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 31 KPGEMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 098499999899998899999983787
No 377
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.48 E-value=0.014 Score=35.70 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=23.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 678849998787778688999999862
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDKS 88 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~~ 88 (246)
.|+..+-|.||+|||||.|++.++..+
T Consensus 365 ~~Ge~vaiVG~SGsGKSTL~~LL~r~y 391 (575)
T PRK11160 365 KAGEKVALLGRTGCGKSTLLQLLTRAW 391 (575)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 699889998899975999999986236
No 378
>PRK01889 ribosome-associated GTPase; Reviewed
Probab=95.47 E-value=0.017 Score=35.32 Aligned_cols=48 Identities=31% Similarity=0.483 Sum_probs=34.9
Q ss_pred CCCCEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 8454165361899999998510167884999878777868899999986
Q gi|254780567|r 39 SRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 39 ~~dnFiv~~~N~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
...-+.++..+..-++.+..|.. +++...+.|++|+|||.|++++..+
T Consensus 170 g~~v~~vSa~~~~gl~~L~~~l~-~GkT~vl~G~SGVGKSTLiN~L~g~ 217 (353)
T PRK01889 170 GVPVLAVNALDGEGVDALQAWLK-PGKTVALLGSSGVGKSTLVNALLGE 217 (353)
T ss_pred CCEEEEEECCCCCCHHHHHHHHH-CCCEEEEECCCCCCHHHHHHHHCCH
T ss_conf 97599997899847899999863-4978999778886699999875653
No 379
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.47 E-value=0.016 Score=35.41 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=22.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 678849998787778688999999862
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDKS 88 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~~ 88 (246)
.++..+.|.||.|+|||.|+++++.-.
T Consensus 25 ~~G~i~~l~G~NGaGKSTLlkli~Gl~ 51 (200)
T PRK13540 25 PAGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 799799998899987999999997785
No 380
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=95.47 E-value=0.015 Score=35.50 Aligned_cols=27 Identities=37% Similarity=0.528 Sum_probs=23.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 678849998787778688999999862
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDKS 88 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~~ 88 (246)
.++..+-|.|++|||||.|++.++.-.
T Consensus 27 ~~G~~iaIvG~sGsGKSTLl~ll~gl~ 53 (238)
T cd03249 27 PPGKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 699999999999998999999982386
No 381
>TIGR02533 type_II_gspE general secretory pathway protein E; InterPro: IPR013369 GspE, the E protein of the type II secretion system, is also referred to as the main terminal branch of the general secretion pathway. ; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex.
Probab=95.47 E-value=0.03 Score=33.75 Aligned_cols=37 Identities=19% Similarity=0.393 Sum_probs=29.4
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 9999851016788499987877786889999998627
Q gi|254780567|r 53 VRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR 89 (246)
Q Consensus 53 ~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~ 89 (246)
++..+.....|+..+...||.|||||.=|.+.-++-+
T Consensus 234 l~~~~~li~rpHGIiLVTGPTGSGKtTTLYaaL~~LN 270 (495)
T TIGR02533 234 LSSLERLIKRPHGIILVTGPTGSGKTTTLYAALSRLN 270 (495)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHC
T ss_conf 9999999718896188417789852588999998635
No 382
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.46 E-value=0.014 Score=35.81 Aligned_cols=26 Identities=38% Similarity=0.530 Sum_probs=22.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 67884999878777868899999986
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.++..+-|.|++|||||.|++.++..
T Consensus 29 ~~Ge~~~IvG~sGsGKSTLl~~i~G~ 54 (204)
T cd03250 29 PKGELVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHCCC
T ss_conf 69989999999998589999998189
No 383
>pfam03193 DUF258 Protein of unknown function, DUF258.
Probab=95.45 E-value=0.017 Score=35.30 Aligned_cols=46 Identities=24% Similarity=0.353 Sum_probs=34.2
Q ss_pred CCCEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 454165361899999998510167884999878777868899999986
Q gi|254780567|r 40 RDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 40 ~dnFiv~~~N~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.+-++++..+...++.+..+.+ ++..++.|++|+|||.|++++..+
T Consensus 13 y~v~~~S~~~~~g~~~L~~~l~--~k~sv~~G~SGVGKSTLiN~L~~~ 58 (161)
T pfam03193 13 YEVLVVSAKTGEGIEELKPLLK--GKTSVLAGQSGVGKSTLLNALLPE 58 (161)
T ss_pred CCEEEEECCCCCCHHHHHHHHC--CCEEEEECCCCCCHHHHHHHHCCH
T ss_conf 9089964799879999999867--985999889998899999885634
No 384
>PRK10436 hypothetical protein; Provisional
Probab=95.44 E-value=0.038 Score=33.11 Aligned_cols=50 Identities=20% Similarity=0.219 Sum_probs=35.7
Q ss_pred CCCCCCEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 68845416536189999999851016788499987877786889999998627
Q gi|254780567|r 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR 89 (246)
Q Consensus 37 ~~~~dnFiv~~~N~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~ 89 (246)
..++++.-.++.... .+..+...|+..+++.||.|||||.-+.+.-++.+
T Consensus 191 ~~~L~~LG~~~~~~~---~~~~~~~~p~GliLvtGPTGSGKTTTLya~L~~l~ 240 (461)
T PRK10436 191 TLDLETLGMTPAQLA---QFRQALQQPQGLVLVTGPTGSGKTVTLYSALQTLN 240 (461)
T ss_pred CCCHHHHCCCHHHHH---HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 688878488999999---99999838997799978999956999999997434
No 385
>pfam02456 Adeno_IVa2 Adenovirus IVa2 protein. IVa2 protein can interact with the adenoviral packaging signal and that this interaction involves DNA sequences that have previously been demonstrated to be required for packaging. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter.
Probab=95.43 E-value=0.011 Score=36.49 Aligned_cols=18 Identities=39% Similarity=0.595 Sum_probs=15.4
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 999878777868899999
Q gi|254780567|r 67 VILVGPSGSGKSCLANIW 84 (246)
Q Consensus 67 l~i~G~~GsGKTHLl~a~ 84 (246)
.++|||.|||||+|++.+
T Consensus 90 ~vVYGPTG~GKSQLlRNl 107 (370)
T pfam02456 90 GVVYGPTGCGKSQLLRNL 107 (370)
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 999889987789999998
No 386
>PRK10908 cell division protein FtsE; Provisional
Probab=95.43 E-value=0.014 Score=35.78 Aligned_cols=26 Identities=35% Similarity=0.553 Sum_probs=22.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 67884999878777868899999986
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.++..+-|.||+|||||.|+++++.-
T Consensus 26 ~~Ge~~~liG~nGsGKSTLl~~i~Gl 51 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 69989999999980799999999659
No 387
>pfam00154 RecA recA bacterial DNA recombination protein. RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyses an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.
Probab=95.40 E-value=0.06 Score=31.85 Aligned_cols=94 Identities=16% Similarity=0.216 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHHCCCC-CEEEEECCCCCCHHHHHH-HHHHH--HC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-C
Q ss_conf 18999999985101678-849998787778688999-99986--27--620135676444546666665334332100-3
Q gi|254780567|r 48 AIEQAVRLIDSWPSWPS-RVVILVGPSGSGKSCLAN-IWSDK--SR--STRFSNIAKSLDSILIDTRKPVLLEDIDLL-D 120 (246)
Q Consensus 48 ~N~~A~~~i~~~~~~~~-~~l~i~G~~GsGKTHLl~-a~~~~--~~--~~~~~~~~~~~~~~~~~~~~~i~iddi~~~-~ 120 (246)
+--.+++.+-.....|. +..-||||++||||+|+- ++++. .+ +.|++.. ...+........ +..+.+... .
T Consensus 35 tgs~~lD~aLg~GGlP~GRi~ei~G~essGKTtlal~~ia~aQk~gg~~~~iD~E-~a~d~~~a~~lG-VD~~~l~~~qp 112 (322)
T pfam00154 35 TGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAE-HALDPVYAKKLG-VDIDNLLVSQP 112 (322)
T ss_pred CCHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHH-HHCCHHHHHHCC-CCHHHEEEECC
T ss_conf 5808999987589977870899988987778999999999997349938998536-605988999809-88025389778
Q ss_pred CCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 76103354555431123421564
Q gi|254780567|r 121 FNDTQLFHIINSIHQYDSSLLMT 143 (246)
Q Consensus 121 ~~ee~lf~l~n~~~~~~~~iilt 143 (246)
..-|+.+.+++.+...+..-++.
T Consensus 113 d~~Eqal~i~~~li~~~~~~liV 135 (322)
T pfam00154 113 DTGEQALEIADMLVRSGAVDLIV 135 (322)
T ss_pred CHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 83999999999985379976599
No 388
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=95.40 E-value=0.017 Score=35.24 Aligned_cols=25 Identities=44% Similarity=0.666 Sum_probs=21.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 6788499987877786889999998
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSD 86 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~ 86 (246)
.++..+-|.||+|||||.|+++++-
T Consensus 25 ~~Ge~~aliG~sGsGKSTLl~~l~g 49 (248)
T PRK11264 25 KPGEVVAIIGPSGSGKTTLLRCINL 49 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 7998999999999809999999975
No 389
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.40 E-value=0.017 Score=35.27 Aligned_cols=109 Identities=18% Similarity=0.103 Sum_probs=51.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHCCCC
Q ss_conf 788499987877786889999998627620135676444546666665334332100376----1033545554311234
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN----DTQLFHIINSIHQYDS 138 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iddi~~~~~~----ee~lf~l~n~~~~~~~ 138 (246)
.+-.+||.|-||||||.|++++.+...........+.-+ ..+...-.+...-..+ -..+.++-..+..+ +
T Consensus 23 kg~viWlTGLSGSGKTTlA~~L~~~L~~~~~~~~~LDGD-----~lR~~l~~dlgfs~~dR~~n~~r~~~lak~l~~~-G 96 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEALHELGVHTYLLDGD-----NVRHGLCSDLGFSDADRKENIRRVGEVAKLMVDA-G 96 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECHH-----HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHC-C
T ss_conf 986999879999988999999999999759975997779-----9987436678989999999999999999999858-9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH--CCEEEECCCCHHHHH
Q ss_conf 21564035432002234566788521--222450788978999
Q gi|254780567|r 139 SLLMTARTFPVSWGVCLPDLCSRLKA--ATVVKISLPDDDFLE 179 (246)
Q Consensus 139 ~iilts~~~p~~~~~~l~DL~SRl~~--g~~~~I~~pdde~~~ 179 (246)
.++++|...|... .....+.++.. ..-+-+..|=+..+.
T Consensus 97 ~iVIvs~Isp~~~--~R~~~R~~~~~~~f~EIyl~~~le~c~~ 137 (198)
T PRK03846 97 LVVLTAFISPHRA--ERQMVRERLGEGEFIEVFVDTPLAICEA 137 (198)
T ss_pred CEEEECCCCCCHH--HHHHHHHHCCCCCEEEEEECCCHHHHHH
T ss_conf 8366414788799--9999998678775799994388999987
No 390
>PRK13544 consensus
Probab=95.40 E-value=0.017 Score=35.31 Aligned_cols=26 Identities=23% Similarity=0.483 Sum_probs=22.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 67884999878777868899999986
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.++...-|.||.|||||.|+++++.-
T Consensus 25 ~~Gei~~l~G~NGsGKSTLl~~i~Gl 50 (208)
T PRK13544 25 KQNSLTLVIGNNGSGKTSLLRLLAGL 50 (208)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 29949999999999899999999588
No 391
>TIGR02857 CydD ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; InterPro: IPR014216 The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain and a C-terminal ATP-binding domain. In Escherichia coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in the export of redox-active thiol compounds such as cysteine and glutathione , . The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this entry are all either found in the gammaproteobacterial context, or the CydABCD context. All members of this entry scoring above the trusted cut off at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature, based on this operon in Bacillus subtilis, assigns cydC to the third gene in the operon, where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologues in this family in accordance with the precedence of publication of the E. coli name, CydD..
Probab=95.38 E-value=0.015 Score=35.63 Aligned_cols=60 Identities=28% Similarity=0.285 Sum_probs=36.2
Q ss_pred CCCCCCCCCCCCCCCCCEEECC-CHHH--HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 3415588877668845416536-1899--999998510167884999878777868899999986
Q gi|254780567|r 26 EQLFFSFPRCLGISRDDLLVHS-AIEQ--AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 26 ~Ql~l~~~~~~~~~~dnFiv~~-~N~~--A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.....| +-.|.-.|++--+.- .++. |..-+.- .=.|+..+-|.||||+|||.|++.+.--
T Consensus 339 ~~~a~D-G~~P~l~~~~v~~~y~~G~~~pa~~~~sf-~~~pG~~vAl~G~SGaGKSTLL~lLLGf 401 (570)
T TIGR02857 339 GRLAAD-GADPSLEFEGVSVAYAPGRDEPALRPVSF-TVEPGERVALVGPSGAGKSTLLNLLLGF 401 (570)
T ss_pred CCCCCC-CCCCEEEEEEEEEECCCCCHHHCCCCCCE-EECCCCEEEEEECCCCCHHHHHHHHHCC
T ss_conf 010036-99840788751686278880103788541-6638704888627999788999999715
No 392
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=95.37 E-value=0.015 Score=35.53 Aligned_cols=47 Identities=19% Similarity=0.240 Sum_probs=32.7
Q ss_pred CCCCCCCEEECCC-HHHHHH-----HHHHHHCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 6688454165361-899999-----9985101678849998787778688999
Q gi|254780567|r 36 LGISRDDLLVHSA-IEQAVR-----LIDSWPSWPSRVVILVGPSGSGKSCLAN 82 (246)
Q Consensus 36 ~~~~~dnFiv~~~-N~~A~~-----~i~~~~~~~~~~l~i~G~~GsGKTHLl~ 82 (246)
..|.||..|-..+ ++..|+ ++....++-+-.++-||..||||||-+.
T Consensus 43 ~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~ti~aYGqTGSGKTyTm~ 95 (325)
T cd01369 43 KTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYNGTIFAYGQTGSGKTYTME 95 (325)
T ss_pred CEEECCEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEC
T ss_conf 24556857199999899999988999999967786469974578999862512
No 393
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.37 E-value=0.017 Score=35.22 Aligned_cols=26 Identities=31% Similarity=0.584 Sum_probs=22.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 67884999878777868899999986
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.++..+.|.||.|+|||.|+++++..
T Consensus 26 ~~Gei~~l~G~NGaGKTTLlk~i~Gl 51 (206)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLLAGL 51 (206)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 69949999899999899999999588
No 394
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.36 E-value=0.017 Score=35.28 Aligned_cols=25 Identities=40% Similarity=0.504 Sum_probs=21.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 6788499987877786889999998
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSD 86 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~ 86 (246)
.++..+=|.|++|||||.|+++++-
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 4897899984898988899999956
No 395
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=95.36 E-value=0.018 Score=35.15 Aligned_cols=24 Identities=38% Similarity=0.619 Sum_probs=19.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 788499987877786889999998
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSD 86 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~ 86 (246)
|....-|.||+|||||.|+++++-
T Consensus 21 p~GitaIvGpsGsGKSTLl~~i~~ 44 (197)
T cd03278 21 PPGLTAIVGPNGSGKSNIIDAIRW 44 (197)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 898289999999988999999998
No 396
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.35 E-value=0.016 Score=35.33 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=22.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 678849998787778688999999862
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDKS 88 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~~ 88 (246)
.++..+.|.||+|||||.|++.+..-.
T Consensus 28 ~~G~~v~ivG~sGsGKSTLl~ll~gl~ 54 (220)
T cd03245 28 RAGEKVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 799999999999985999999996725
No 397
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=95.35 E-value=0.021 Score=34.67 Aligned_cols=49 Identities=24% Similarity=0.328 Sum_probs=36.1
Q ss_pred CCCCCEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 884541653618999999985101678849998787778688999999862
Q gi|254780567|r 38 ISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS 88 (246)
Q Consensus 38 ~~~dnFiv~~~N~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~ 88 (246)
.+..-|.++..+..-.+.+..+.. ++..++.|++|+|||.|++++..+.
T Consensus 137 ~gy~v~~~S~~~~~g~~~L~~~l~--~k~~v~~G~SGvGKSSLiN~L~~~~ 185 (287)
T cd01854 137 LGYPVLAVSAKTGEGLDELREYLK--GKTSVLVGQSGVGKSTLINALLPDL 185 (287)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHC--CCEEEEECCCCCCHHHHHHHHCCHH
T ss_conf 998499996689858899998747--9889998899888899998746212
No 398
>PRK07667 uridine kinase; Provisional
Probab=95.34 E-value=0.025 Score=34.17 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=23.1
Q ss_pred CCCCCEEE--EECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 16788499--98787778688999999862762
Q gi|254780567|r 61 SWPSRVVI--LVGPSGSGKSCLANIWSDKSRST 91 (246)
Q Consensus 61 ~~~~~~l~--i~G~~GsGKTHLl~a~~~~~~~~ 91 (246)
+.+.+.++ |-|++|||||++++.+++..+..
T Consensus 9 ~~~~~r~iIgIaG~sgSGKTTla~~L~~~l~~~ 41 (190)
T PRK07667 9 KHKENRFILGIDGLSRSGKTTFVANLKENMKQE 41 (190)
T ss_pred HCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 575986999977989788999999999998665
No 399
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.34 E-value=0.018 Score=35.11 Aligned_cols=28 Identities=32% Similarity=0.477 Sum_probs=23.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 6788499987877786889999998627
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDKSR 89 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~~~ 89 (246)
.++..+-|.||+|||||.|+++++....
T Consensus 26 ~~Ge~~aivG~sGsGKSTLl~~l~G~~~ 53 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHCCC
T ss_conf 6999999999998759999999986176
No 400
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=95.34 E-value=0.013 Score=36.01 Aligned_cols=48 Identities=13% Similarity=0.124 Sum_probs=32.9
Q ss_pred CCCCCCCCEEECC-CHHHHHH-----HHHHHHCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 7668845416536-1899999-----9985101678849998787778688999
Q gi|254780567|r 35 CLGISRDDLLVHS-AIEQAVR-----LIDSWPSWPSRVVILVGPSGSGKSCLAN 82 (246)
Q Consensus 35 ~~~~~~dnFiv~~-~N~~A~~-----~i~~~~~~~~~~l~i~G~~GsGKTHLl~ 82 (246)
...|+||.-|-.. +++..|+ ++....++-+-.++-||..||||||-+.
T Consensus 47 ~k~F~FD~vf~~~~~Q~~vy~~~~~plv~~~l~G~n~ti~aYGqTGSGKTyTm~ 100 (352)
T cd01364 47 TKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMGYNCTIFAYGQTGTGKTYTME 100 (352)
T ss_pred CEEEECCEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEE
T ss_conf 703547868399999899999998999999977885599987788999349975
No 401
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.34 E-value=0.019 Score=34.99 Aligned_cols=26 Identities=31% Similarity=0.636 Sum_probs=22.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 67884999878777868899999986
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.++..+-|.||+|||||.|+++++.-
T Consensus 24 ~~Gei~~iiG~nGaGKSTLl~~i~Gl 49 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 69989999889999899999999568
No 402
>pfam01078 Mg_chelatase Magnesium chelatase, subunit ChlI. Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa.
Probab=95.33 E-value=0.02 Score=34.79 Aligned_cols=36 Identities=33% Similarity=0.517 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 9999999851016788499987877786889999998
Q gi|254780567|r 50 EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 (246)
Q Consensus 50 ~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~ 86 (246)
+.|..+++-..-+ ...++++||+|+|||-|++.+..
T Consensus 9 ~~akrAl~iAaaG-~H~lLl~GpPG~GKTmlA~rl~~ 44 (207)
T pfam01078 9 EQAKRALEIAAAG-GHNLLMIGPPGSGKTMLAKRLPG 44 (207)
T ss_pred HHHHHHHHHHHCC-CCCEEEECCCCCCHHHHHHHHHC
T ss_conf 9999999998547-87589788998029999976301
No 403
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=95.33 E-value=0.017 Score=35.26 Aligned_cols=26 Identities=31% Similarity=0.567 Sum_probs=22.9
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 16788499987877786889999998
Q gi|254780567|r 61 SWPSRVVILVGPSGSGKSCLANIWSD 86 (246)
Q Consensus 61 ~~~~~~l~i~G~~GsGKTHLl~a~~~ 86 (246)
=.++..+-|-||+|||||.|+++++.
T Consensus 29 i~~Gei~aiiG~nGsGKSTL~~~i~G 54 (252)
T CHL00131 29 INAGEIHAIMGPNGSGKSTLSKVIAG 54 (252)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHCC
T ss_conf 87998999999999999999999727
No 404
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.31 E-value=0.018 Score=35.07 Aligned_cols=27 Identities=33% Similarity=0.480 Sum_probs=23.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 678849998787778688999999862
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDKS 88 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~~ 88 (246)
.++..+.|.||.|+|||.|+++++...
T Consensus 24 ~~ge~~~l~G~NGsGKTTl~~~l~G~~ 50 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 799999999899984999999984898
No 405
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.29 E-value=0.014 Score=35.79 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=19.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 788499987877786889999998
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSD 86 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~ 86 (246)
++...-|||+||+|||+|+.-++.
T Consensus 18 ~G~it~i~G~pG~GKStl~lq~a~ 41 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAV 41 (218)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 887999989999849999999999
No 406
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=95.28 E-value=0.019 Score=35.00 Aligned_cols=26 Identities=42% Similarity=0.608 Sum_probs=22.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 67884999878777868899999986
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.++..+.|-||+|||||.|+++++.-
T Consensus 25 ~~Ge~~~liG~nGsGKSTll~~i~Gl 50 (240)
T PRK09493 25 DQGEVVVIIGPSGSGKSTLLRCINKL 50 (240)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 79989999999998099999999638
No 407
>TIGR00955 3a01204 Pigment precourser permease; InterPro: IPR005284 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes different parts of a membrane-spanning permease system necessary for the transport of pigment precursor into pigment cells responsible for eye color. White protein dimerises with brown protein for the transport of guanine and with scarlet protein for the transport of tryptophan.; GO: 0006810 transport.
Probab=95.28 E-value=0.016 Score=35.46 Aligned_cols=73 Identities=18% Similarity=0.235 Sum_probs=42.7
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCC--CCCCH--HHHHHHH
Q ss_conf 5455543112342156403543200223456678852122245078897899999999866628--97988--9999999
Q gi|254780567|r 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ--IFIDK--KLAAYIV 202 (246)
Q Consensus 127 f~l~n~~~~~~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~--i~l~~--~v~~yl~ 202 (246)
...+-.+-..|+.+|+|=..|.+++ +.+=|=.==|+.|-++=...|+.. .+.+.+-| ..+|+ .=.||++
T Consensus 215 v~~L~~LA~~G~tiI~tIHQPSs~l-F~lFd~i~lla~Grvvy~G~p~~a------~~FF~~~Gpd~~cP~~yNPADF~~ 287 (671)
T TIGR00955 215 VQVLKGLAQKGKTIICTIHQPSSEL-FELFDKIILLAEGRVVYLGSPDQA------VPFFSELGPDFPCPENYNPADFYL 287 (671)
T ss_pred HHHHHHHHCCCCEEEEEEECCCHHH-HHHHCCEEEEECCEEEEECCCHHH------HHHHHHCCCCCCCCCCCCCHHHHH
T ss_conf 9999998508979999830561889-851171677527727982781036------898984488878978888888999
Q ss_pred HCCC
Q ss_conf 4066
Q gi|254780567|r 203 QRME 206 (246)
Q Consensus 203 ~r~~ 206 (246)
+-+.
T Consensus 288 ~~la 291 (671)
T TIGR00955 288 QVLA 291 (671)
T ss_pred HHHH
T ss_conf 9973
No 408
>PRK10744 phosphate transporter subunit; Provisional
Probab=95.27 E-value=0.02 Score=34.78 Aligned_cols=26 Identities=35% Similarity=0.598 Sum_probs=22.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 67884999878777868899999986
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.++..+-|-||+|||||.|+++++.-
T Consensus 34 ~~Ge~~~liG~nGaGKSTLlk~i~gl 59 (257)
T PRK10744 34 AKNQVTAFIGPSGCGKSTLLRTFNKM 59 (257)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89989999999998199999999876
No 409
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=95.26 E-value=0.018 Score=35.02 Aligned_cols=27 Identities=44% Similarity=0.682 Sum_probs=23.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 678849998787778688999999862
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDKS 88 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~~ 88 (246)
.++..+-|.|++|||||.|++.++.-.
T Consensus 38 ~~Ge~vaIvG~sGsGKSTL~~ll~gl~ 64 (226)
T cd03248 38 HPGEVTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 299999999999984999999996454
No 410
>pfam08423 Rad51 Rad51. Rad51 is a DNA repair and recombination protein and is a homologue of the bacterial ATPase RecA protein.
Probab=95.26 E-value=0.013 Score=35.99 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=17.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHH
Q ss_conf 8849998787778688999999
Q gi|254780567|r 64 SRVVILVGPSGSGKSCLANIWS 85 (246)
Q Consensus 64 ~~~l~i~G~~GsGKTHLl~a~~ 85 (246)
+...=||||+|||||.|+..+|
T Consensus 43 g~ITEi~G~~gsGKTQlc~qla 64 (261)
T pfam08423 43 GSITEVFGEFRTGKTQLCHTLC 64 (261)
T ss_pred CEEEEEECCCCCCHHHHHHHHH
T ss_conf 7299998998887899999999
No 411
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.25 E-value=0.018 Score=35.16 Aligned_cols=25 Identities=40% Similarity=0.696 Sum_probs=22.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 6788499987877786889999998
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSD 86 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~ 86 (246)
.++..+-|-||+|+|||.|+++++.
T Consensus 33 ~~Gei~~ilGpnGaGKSTLl~~l~G 57 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALAG 57 (194)
T ss_pred ECCEEEEEECCCCCHHHHHHHHHHC
T ss_conf 0881999998999519999999857
No 412
>PRK11701 phnK phosphonates transport ATP-binding protein; Provisional
Probab=95.25 E-value=0.02 Score=34.85 Aligned_cols=26 Identities=46% Similarity=0.731 Sum_probs=22.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 67884999878777868899999986
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.++..+-|-||+|||||.|+++++..
T Consensus 30 ~~GEi~~iiG~nGaGKSTLl~~i~G~ 55 (258)
T PRK11701 30 YPGEVLGIVGESGSGKTTLLNALSAR 55 (258)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 79979999888998899999998567
No 413
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.24 E-value=0.02 Score=34.81 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=20.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 999878777868899999986276
Q gi|254780567|r 67 VILVGPSGSGKSCLANIWSDKSRS 90 (246)
Q Consensus 67 l~i~G~~GsGKTHLl~a~~~~~~~ 90 (246)
+-|.|++|||||.+++.+++..+.
T Consensus 2 IgI~G~sgsGKTT~a~~L~~~l~~ 25 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLGN 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 898899988599999999998099
No 414
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.24 E-value=0.022 Score=34.58 Aligned_cols=106 Identities=11% Similarity=0.081 Sum_probs=51.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--C---HHHHHHHHHHHCCC
Q ss_conf 788499987877786889999998627620135676444546666665334332100376--1---03354555431123
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--D---TQLFHIINSIHQYD 137 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iddi~~~~~~--e---e~lf~l~n~~~~~~ 137 (246)
.+-.+||.|-||||||.|++++...-.........+.-+. + +.++ .+. ..... . ...-++-..+..+|
T Consensus 6 kg~viW~TGLsGSGKTTiA~~l~~~L~~~g~~~~~LDGD~--l---R~~~-~~~-gfs~~~R~~n~~r~~~lak~l~~~g 78 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDE--L---REIF-GHS-GYDKESRIEMALKRAKLAAFLADQG 78 (176)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHH--H---HHHH-CCC-CCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 8679997899999899999999999997599779988689--9---9873-658-9899999999999999999986469
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHH
Q ss_conf 42156403543200223456678852122245078897899
Q gi|254780567|r 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178 (246)
Q Consensus 138 ~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~ 178 (246)
. ++++|-..|..- ....-+..+.-..-+-+..|=+...
T Consensus 79 ~-~vIvs~isp~~~--~R~~~R~~~~~~~EVyv~~ple~~~ 116 (176)
T PRK05541 79 M-IVIVTTISMFNE--IYAYNRKHLPNYFEVYLKCDMEELI 116 (176)
T ss_pred C-CEEEEECCCCHH--HHHHHHHHCCCCEEEEEECCHHHHH
T ss_conf 8-036752279899--9999997488768999948999998
No 415
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.24 E-value=0.042 Score=32.81 Aligned_cols=49 Identities=16% Similarity=0.222 Sum_probs=33.2
Q ss_pred CCCCCEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 8845416536189999999851016788499987877786889999998627
Q gi|254780567|r 38 ISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR 89 (246)
Q Consensus 38 ~~~dnFiv~~~N~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~ 89 (246)
.+++..-..+.+.. .+.++...|..-+.+.||.|||||..+.+..++.+
T Consensus 235 l~l~~Lg~~~~~~~---~~~~~~~~p~GliLvTGPTGSGKTTTLY~~L~~ln 283 (500)
T COG2804 235 LDLEKLGMSPFQLA---RLLRLLNRPQGLILVTGPTGSGKTTTLYAALSELN 283 (500)
T ss_pred CCHHHHCCCHHHHH---HHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 88878389988999---99999728970899968999988999999999862
No 416
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.24 E-value=0.019 Score=34.98 Aligned_cols=26 Identities=38% Similarity=0.584 Sum_probs=22.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 67884999878777868899999986
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.++..+-|.||+|||||.|++.++.-
T Consensus 31 ~~GE~vaivG~nGsGKSTL~k~l~Gl 56 (279)
T PRK13635 31 YEGEWVAIVGHNGSGKSTLAKLLNGL 56 (279)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 79989999999996599999999728
No 417
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF; InterPro: IPR014317 Members of this protein are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, found in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol and filamentous phage infection..
Probab=95.22 E-value=0.25 Score=28.04 Aligned_cols=174 Identities=14% Similarity=0.213 Sum_probs=109.0
Q ss_pred EECCCHHHHHHHHHHHHC--CCCCEEEEECCCCCCHHHHH---HHHHHHHCC--CCHHHHHHHHHHHHHHHH--------
Q ss_conf 653618999999985101--67884999878777868899---999986276--201356764445466666--------
Q gi|254780567|r 44 LVHSAIEQAVRLIDSWPS--WPSRVVILVGPSGSGKSCLA---NIWSDKSRS--TRFSNIAKSLDSILIDTR-------- 108 (246)
Q Consensus 44 iv~~~N~~A~~~i~~~~~--~~~~~l~i~G~~GsGKTHLl---~a~~~~~~~--~~~~~~~~~~~~~~~~~~-------- 108 (246)
++|.||.+ .+.++.... .=++|+.|-|+-|+||==++ |.+++.... +.+.|.+.+-.....+-+
T Consensus 1 liG~S~aF-L~vLeqvS~lA~l~rPVLiiGERGTGKELiA~RLHyLS~RW~~Plv~LNCAALse~LldSELFGHEaGAFT 79 (349)
T TIGR02974 1 LIGESNAF-LEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRWQQPLVKLNCAALSENLLDSELFGHEAGAFT 79 (349)
T ss_pred CCCCCHHH-HHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCHH
T ss_conf 98872789-99999875104678866886146746899998853324655488626610127825555665310010013
Q ss_pred ---------------HHHHHHHHHCCCCC-CHHHHHHHHH----------HHCCCCCEEEEECCCCCCHH---HHHHHHH
Q ss_conf ---------------65334332100376-1033545554----------31123421564035432002---2345667
Q gi|254780567|r 109 ---------------KPVLLEDIDLLDFN-DTQLFHIINS----------IHQYDSSLLMTARTFPVSWG---VCLPDLC 159 (246)
Q Consensus 109 ---------------~~i~iddi~~~~~~-ee~lf~l~n~----------~~~~~~~iilts~~~p~~~~---~~l~DL~ 159 (246)
..+.+|.+-..+.. ||.|+=.+.. ....+.++|-+.+...+.+- -+..||-
T Consensus 80 GA~~rh~GRFERAdGGTLFLDElAtas~~VQEKLLRViEYG~fERVGG~~~l~vDVRlvaATN~DLP~lA~~G~FRaDLL 159 (349)
T TIGR02974 80 GAKKRHEGRFERADGGTLFLDELATASLAVQEKLLRVIEYGEFERVGGSQTLKVDVRLVAATNADLPALAAEGRFRADLL 159 (349)
T ss_pred HHCCCCCCCCEECCCCCCHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCEEEECCEEEECCCCCHHHHHHCCCCCCHHH
T ss_conf 03046889854436887388887142167678661201013033017860477351367621413698986589840145
Q ss_pred HHHHHCCEEEECCCC----HHHHHH--HHHHHHHHCCCCC----CHHHHHHHHH-CCCCCHHHHHHHHHHH
Q ss_conf 885212224507889----789999--9999866628979----8899999994-0667989999999999
Q gi|254780567|r 160 SRLKAATVVKISLPD----DDFLEK--VIVKMFADRQIFI----DKKLAAYIVQ-RMERSLVFAEKLVDKM 219 (246)
Q Consensus 160 SRl~~g~~~~I~~pd----de~~~~--il~k~~~~r~i~l----~~~v~~yl~~-r~~Rs~~~l~~~l~~L 219 (246)
-||+ +-|+.|+|+= |=++.+ --.++|.+-++.+ ++.+..-|.. +.|.++|++.++|++-
T Consensus 160 DRLA-FDVi~LPPLR~R~~DI~lLAe~FA~~Ma~EL~~~~F~GFt~~A~~~L~~Y~WPGNvRELkNvvERs 229 (349)
T TIGR02974 160 DRLA-FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERS 229 (349)
T ss_pred HHHH-HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 5445-655079788887232789999999999997078655114389999997068888521244467666
No 418
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=95.22 E-value=0.043 Score=32.76 Aligned_cols=64 Identities=22% Similarity=0.204 Sum_probs=39.2
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHCC---------CCCEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 03415588877668845416536189999999851016---------788499987877786889999998627620
Q gi|254780567|r 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW---------PSRVVILVGPSGSGKSCLANIWSDKSRSTR 92 (246)
Q Consensus 25 ~~Ql~l~~~~~~~~~~dnFiv~~~N~~A~~~i~~~~~~---------~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~ 92 (246)
.++..+.+...+.+.. -+.+| +.++..++.+... .-..++++||.+||||.|...++|+.-+..
T Consensus 29 ~~~~~~~~~~r~~~~~--~ve~P--~d~~~~~e~i~~~~~~~~~~~~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG 101 (398)
T COG1341 29 EGGALSVARVRTTYHQ--LVEVP--EDRSEPLEEIADTWESKSESAGKVGVVMVVGPVDSGKSTLTTYLANKLLARG 101 (398)
T ss_pred CCCCCEEEEECCEECC--CCCCC--HHHHHHHHHHHHCCCCCCHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 4874204100210012--42281--6763178997632244201206873899989867678899999998876447
No 419
>pfam10662 PduV-EutP Ethanolamine utilisation - propanediol utilisation. Members of this family function in ethanolamine and propanediol degradation pathways, however the exact roles of these proteins is poorly understood.
Probab=95.22 E-value=0.069 Score=31.48 Aligned_cols=115 Identities=14% Similarity=0.223 Sum_probs=56.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 49998787778688999999862762013567644454666666533433210037610335455543112342156403
Q gi|254780567|r 66 VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTAR 145 (246)
Q Consensus 66 ~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iddi~~~~~~ee~lf~l~n~~~~~~~~iilts~ 145 (246)
-+.|.|+|++|||.|++++..+.-. .....+... .... -|-.+.....+.+.+.+........-+++.-+
T Consensus 3 kVaivGrpNvGKSTLlN~L~g~~i~-~~K~qtt~~--------~~~~-IDTPG~~~~~~~~~~~~~~~~~daDvil~vvD 72 (143)
T pfam10662 3 KIMLIGRSGCGKTTLTQALNGEELK-YKKTQAIEF--------SDNM-IDTPGEYLENRRFYSALIVTAADADVIALVQD 72 (143)
T ss_pred EEEEECCCCCCHHHHHHHHCCCCEE-ECCCEEEEE--------CCCE-EECCCCCCCCHHHHHHHHHHHHHCCEEEEEEE
T ss_conf 5999899999999999997599445-178707985--------5748-99987665628999999999964999999987
Q ss_pred CCCCCHHHHHHHHHHHHHHCCEEE---ECCCCHHHHHHHHHHHHHHCCC
Q ss_conf 543200223456678852122245---0788978999999998666289
Q gi|254780567|r 146 TFPVSWGVCLPDLCSRLKAATVVK---ISLPDDDFLEKVIVKMFADRQI 191 (246)
Q Consensus 146 ~~p~~~~~~l~DL~SRl~~g~~~~---I~~pdde~~~~il~k~~~~r~i 191 (246)
..- ......+.+.+.+..-.+.- |..+.++.+...+.+.....++
T Consensus 73 a~~-~~~~~~~~~~~~~~kpvIlViNKiD~~~~~~~l~~~~~~~~~~~~ 120 (143)
T pfam10662 73 ATE-PWSVFPPGFASMFNKPVIGIITKIDLAKDEANIEMVEEWLNNAGA 120 (143)
T ss_pred CCC-CCCCCCHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 788-667568778975479889999802245756678999999975899
No 420
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.22 E-value=0.021 Score=34.73 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 7884999878777868899999986
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
++....|-||.|||||.|+++++.-
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~~~ 51 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 9979999899888999999998656
No 421
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=95.21 E-value=0.02 Score=34.77 Aligned_cols=25 Identities=36% Similarity=0.599 Sum_probs=21.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 6788499987877786889999998
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSD 86 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~ 86 (246)
.++..+-|.||+|||||.|+++++-
T Consensus 26 ~~Ge~~~iiG~nGaGKSTLl~~l~g 50 (242)
T PRK11124 26 PQGETLVLLGPSGAGKSSLLRVLNL 50 (242)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 7998999999999719999999965
No 422
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.21 E-value=0.018 Score=35.15 Aligned_cols=24 Identities=33% Similarity=0.667 Sum_probs=20.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 788499987877786889999998
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSD 86 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~ 86 (246)
++-.+++.||+|||||.++..+..
T Consensus 26 ~gef~vliGpSGsGKTTtLkMINr 49 (309)
T COG1125 26 EGEFLVLIGPSGSGKTTTLKMINR 49 (309)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHC
T ss_conf 972899987899757879999960
No 423
>KOG4280 consensus
Probab=95.21 E-value=0.019 Score=34.96 Aligned_cols=48 Identities=19% Similarity=0.192 Sum_probs=37.0
Q ss_pred CCCCCCCCEEECCCHHH------HHHHHHHHHCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 76688454165361899------9999985101678849998787778688999
Q gi|254780567|r 35 CLGISRDDLLVHSAIEQ------AVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 (246)
Q Consensus 35 ~~~~~~dnFiv~~~N~~------A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~ 82 (246)
+..|+||.-|-.++++. +...+++...+-+..+|=||-.|+||||-+.
T Consensus 51 ~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl~GyNgtvFaYGQtGsGKTyTM~ 104 (574)
T KOG4280 51 PKSFTFDAVFDSDSTQDDVYQETVAPLVESVLEGYNGTVFAYGQTGSGKTYTMI 104 (574)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEE
T ss_conf 987332355469977999999871899999854468438862257898734774
No 424
>PRK10536 hypothetical protein; Provisional
Probab=95.21 E-value=0.037 Score=33.18 Aligned_cols=54 Identities=9% Similarity=0.055 Sum_probs=30.6
Q ss_pred HHHCCCCCEEEEECCCCCCH----HHHHHHHHHHHHHCCEEEECCCCHHH--HHHHHHHH
Q ss_conf 43112342156403543200----22345667885212224507889789--99999998
Q gi|254780567|r 132 SIHQYDSSLLMTARTFPVSW----GVCLPDLCSRLKAATVVKISLPDDDF--LEKVIVKM 185 (246)
Q Consensus 132 ~~~~~~~~iilts~~~p~~~----~~~l~DL~SRl~~g~~~~I~~pdde~--~~~il~k~ 185 (246)
...-.+.++++++|..-.++ ...+.|...||.....+.+-..+.+. |-.++++.
T Consensus 198 TRiG~~SKiVi~GD~~Q~Dl~~~~~SGL~~~~~~l~~~~~i~~i~F~~~DIVRs~lVk~I 257 (262)
T PRK10536 198 TRLGENVTVIVNGDITQCDLPRGVKSGLSDALERFEEDEMVGIVRFGKEDCVRSALCQRT 257 (262)
T ss_pred HHCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHH
T ss_conf 542599689996882022699999873999999956999658998364440167899999
No 425
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.20 E-value=0.052 Score=32.25 Aligned_cols=50 Identities=16% Similarity=0.246 Sum_probs=35.4
Q ss_pred CCCCCCEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 68845416536189999999851016788499987877786889999998627
Q gi|254780567|r 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR 89 (246)
Q Consensus 37 ~~~~dnFiv~~~N~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~ 89 (246)
..+++++-..+.... .++.+...+...+++.||.|||||..+.+..++.+
T Consensus 56 ~~~L~~LG~~~~~~~---~l~~~~~~~~GlilitGptGSGKtTtl~a~l~~~~ 105 (264)
T cd01129 56 ILDLEKLGLKPENLE---IFRKLLEKPHGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred CCCHHHHCCCHHHHH---HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 579879579999999---99999708998899978999977999999998643
No 426
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.20 E-value=0.022 Score=34.58 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=23.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 678849998787778688999999862
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDKS 88 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~~ 88 (246)
.++..+-|-||+|||||.|+++++.-.
T Consensus 23 ~~Ge~~~liG~nGsGKTTLl~~i~G~~ 49 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 699799999899988999999995798
No 427
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=95.19 E-value=0.021 Score=34.62 Aligned_cols=29 Identities=34% Similarity=0.470 Sum_probs=23.7
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 10167884999878777868899999986
Q gi|254780567|r 59 WPSWPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 59 ~~~~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
+.=.++..+-|-||+|||||.|++.++.-
T Consensus 20 l~i~~GE~v~iiG~nGaGKSTLl~~i~Gl 48 (233)
T PRK10771 20 LTVERGEQVAILGPSGAGKSTLLNLIAGF 48 (233)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 89889989999999998199999999659
No 428
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=95.17 E-value=0.017 Score=35.31 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=31.9
Q ss_pred CCCCCCCEEE-CCCHHHHHH-----HHHHHHCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 6688454165-361899999-----9985101678849998787778688999
Q gi|254780567|r 36 LGISRDDLLV-HSAIEQAVR-----LIDSWPSWPSRVVILVGPSGSGKSCLAN 82 (246)
Q Consensus 36 ~~~~~dnFiv-~~~N~~A~~-----~i~~~~~~~~~~l~i~G~~GsGKTHLl~ 82 (246)
..|+||-.|- ..+++..|+ +++...++-+-.++-||..||||||-+.
T Consensus 46 ~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~ti~aYGqTGSGKTyTm~ 98 (335)
T smart00129 46 KKFTFDKVFGATASQEDVFEETAAPLVDSVLEGYNATIFAYGQTGSGKTYTMS 98 (335)
T ss_pred EEEECCEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEC
T ss_conf 06567868798999899999988999999978975799997999999764756
No 429
>COG1162 Predicted GTPases [General function prediction only]
Probab=95.17 E-value=0.024 Score=34.31 Aligned_cols=121 Identities=17% Similarity=0.147 Sum_probs=66.8
Q ss_pred CCCCCEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88454165361899999998510167884999878777868899999986276201356764445466666653343321
Q gi|254780567|r 38 ISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID 117 (246)
Q Consensus 38 ~~~dnFiv~~~N~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iddi~ 117 (246)
.+..-|+++.-|....+.+..+. .++..++-|++|+|||.|++++.-+..... ...+. ..--
T Consensus 140 ~gy~v~~~s~~~~~~~~~l~~~l--~~~~svl~GqSGVGKSSLiN~L~p~~~~~t---~eIS~-------------~~~r 201 (301)
T COG1162 140 IGYPVLFVSAKNGDGLEELAELL--AGKITVLLGQSGVGKSTLINALLPELNQKT---GEISE-------------KLGR 201 (301)
T ss_pred CCEEEEEECCCCCCCHHHHHHHH--CCCEEEEECCCCCCHHHHHHHHCCHHHHHH---HHHCC-------------CCCC
T ss_conf 79359995376765589999975--588499988887769998874172121134---42104-------------4789
Q ss_pred CCCC-CCHHHHHHHHHHHCCCCCEEEE--------ECCCCCCHHHHHHHHHHHHHHC---CEEEECCCCHHHHHHH
Q ss_conf 0037-6103354555431123421564--------0354320022345667885212---2245078897899999
Q gi|254780567|r 118 LLDF-NDTQLFHIINSIHQYDSSLLMT--------ARTFPVSWGVCLPDLCSRLKAA---TVVKISLPDDDFLEKV 181 (246)
Q Consensus 118 ~~~~-~ee~lf~l~n~~~~~~~~iilt--------s~~~p~~~~~~l~DL~SRl~~g---~~~~I~~pdde~~~~i 181 (246)
+... ..-.|||+= .|+.++-| ....|.++....++++.+...| -+.+..+|+...+.++
T Consensus 202 GkHTTt~~~l~~l~-----~gG~iiDTPGf~~~~l~~~~~e~l~~~F~ef~~~~~~CkFr~C~H~~EPgCav~~av 272 (301)
T COG1162 202 GRHTTTHVELFPLP-----GGGWIIDTPGFRSLGLAHLEPEDLVQAFPEFAELARQCKFRDCTHTHEPGCAVKAAV 272 (301)
T ss_pred CCCCCCEEEEEECC-----CCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 88763248999838-----998897289977147456799999997699998726798889988899986889898
No 430
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase; InterPro: IPR013380 Proteins in this entry are found in a variety of bacteria, and are predicted to be ATPases involved in type III secretion systems. One example is YscN (P40290 from SWISSPROT) from Yersinia enterocolitica, which is thought to energise the YOP (Yersinia outer protein) secretion system .; GO: 0046961 hydrogen ion transporting ATPase activity rotational mechanism, 0030254 protein secretion by the type III secretion system.
Probab=95.17 E-value=0.012 Score=36.24 Aligned_cols=42 Identities=21% Similarity=0.249 Sum_probs=31.7
Q ss_pred HHHHHHHHHH-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 9999998510-16788499987877786889999998627620
Q gi|254780567|r 51 QAVRLIDSWP-SWPSRVVILVGPSGSGKSCLANIWSDKSRSTR 92 (246)
Q Consensus 51 ~A~~~i~~~~-~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~ 92 (246)
.=+.+|+.+. -+.+.-+=||+++|||||.||..+|+...|..
T Consensus 139 tGvRaiDGlLTcG~GQRiGIFA~aG~GKSTLL~~i~~g~~ADv 181 (430)
T TIGR02546 139 TGVRAIDGLLTCGEGQRIGIFAGAGVGKSTLLGMIARGASADV 181 (430)
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCE
T ss_conf 1466754344036653057870888616689999861898878
No 431
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=95.17 E-value=0.02 Score=34.85 Aligned_cols=27 Identities=37% Similarity=0.604 Sum_probs=23.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 678849998787778688999999862
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDKS 88 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~~ 88 (246)
.++..+-|.||+|||||.|+++++...
T Consensus 25 ~~Ge~~aliG~nGaGKSTLl~~i~G~l 51 (273)
T PRK13547 25 EPGRVTALLGRNGAGKSTLLKVLAGEL 51 (273)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 899899999999976999999995678
No 432
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.17 E-value=0.021 Score=34.64 Aligned_cols=26 Identities=31% Similarity=0.533 Sum_probs=22.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 67884999878777868899999986
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.++....|-||.|+|||.|+++++.-
T Consensus 24 ~~G~i~~i~G~NGsGKSTLlk~i~Gl 49 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 79979999999998199999999679
No 433
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=95.17 E-value=0.019 Score=34.97 Aligned_cols=26 Identities=31% Similarity=0.547 Sum_probs=22.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 67884999878777868899999986
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.++..+-|-||+|||||.|+++++.-
T Consensus 43 ~~GE~~~llGpsGsGKSTllr~i~Gl 68 (377)
T PRK11607 43 YKGEIFALLGASGCGKSTLLRMLAGF 68 (377)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 99989999999984899999999769
No 434
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=95.16 E-value=0.26 Score=27.93 Aligned_cols=201 Identities=16% Similarity=0.207 Sum_probs=108.2
Q ss_pred CCCCCCCCCCEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHH-HHHHHHHHHHH--HHHH
Q ss_conf 87766884541653618999999985101678849998787778688999999862762013-56764445466--6666
Q gi|254780567|r 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS-NIAKSLDSILI--DTRK 109 (246)
Q Consensus 33 ~~~~~~~~dnFiv~~~N~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~-~~~~~~~~~~~--~~~~ 109 (246)
+..+...-++|+-++.++..+.+.. ...|++....+||.+|+|||--.+-+|+.....++. ..........+ ....
T Consensus 64 q~~~~~~~~~~l~tkt~r~~~~~~~-~A~k~g~l~~vyg~~g~gKt~a~~~y~~s~p~~~l~~~~p~~~a~~~i~~i~~~ 142 (297)
T COG2842 64 QAALEKLAPDFLETKTVRRIFFRTR-PASKTGSLVVVYGYAGLGKTQAAKNYAPSNPNALLIEADPSYTALVLILIICAA 142 (297)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHH-HHHHCCCEEEEECCCCCHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHH
T ss_conf 3355546643203502476754205-555168547886332200689998653358641361588136788999999998
Q ss_pred H----------------HHH-HHHHCCCCC--CHHHHHHHHHH---HC-CCCCEEEEECCCC----CCHHHHHHHHHHHH
Q ss_conf 5----------------334-332100376--10335455543---11-2342156403543----20022345667885
Q gi|254780567|r 110 P----------------VLL-EDIDLLDFN--DTQLFHIINSI---HQ-YDSSLLMTARTFP----VSWGVCLPDLCSRL 162 (246)
Q Consensus 110 ~----------------i~i-ddi~~~~~~--ee~lf~l~n~~---~~-~~~~iilts~~~p----~~~~~~l~DL~SRl 162 (246)
. ++. |-...+.-+ +...++-+..+ .. .+.-+++.+...- ..-......+.||.
T Consensus 143 ~~~~~~~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d~~Gi~~vLvG~prL~~~l~~~~~~~~rl~srv 222 (297)
T COG2842 143 AFGATDGTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHDKTGIGVVLVGMPRLFKVLRRPEDELSRLYSRV 222 (297)
T ss_pred HHCCCCHHHHHHHHHHHHHHCCCCCEEEEEHHHCCCHHHHHHHHHHHHHHCCEEEEECCHHHHHCCCCCHHHHHHHHHHH
T ss_conf 74014216888899999997157652665032125868999999988750815998367688851664057899999875
Q ss_pred HHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHH
Q ss_conf 2122245078897899999999866628979889999999406679899999999999999984778-788999999
Q gi|254780567|r 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG-ITRSLAAEV 238 (246)
Q Consensus 163 ~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~kr~-ITi~lvk~v 238 (246)
+-++...-.-||-.....+....... ..+++...+........+-+..++..-...+...+-+ ++-+.+.++
T Consensus 223 ~v~~~~~~~~~d~d~~~~~~~~~l~~----~~~~~v~~~~~~~~g~~~~L~~~l~~~~~~a~~~~~~~~~~~v~~~~ 295 (297)
T COG2842 223 RVGKLLGEKFPDADELAEIAALVLPT----EDELVLMQVIKETEGNIRRLDKILAGAVGTARSNGIKDIDKPVLQEV 295 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 66765533205368889999861763----26999999999600157689999860144544226532006899985
No 435
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.16 E-value=0.019 Score=34.97 Aligned_cols=25 Identities=32% Similarity=0.427 Sum_probs=21.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 6788499987877786889999998
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSD 86 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~ 86 (246)
.++..+-|.||+|||||.|++.++.
T Consensus 18 ~~Ge~vaiiG~sGsGKSTLl~~l~G 42 (276)
T PRK13634 18 PSGSYVAIIGHTGSGKSTLLQHLNG 42 (276)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 8998999999999699999999974
No 436
>PTZ00301 uridine kinase; Provisional
Probab=95.15 E-value=0.12 Score=30.08 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 49998787778688999999862
Q gi|254780567|r 66 VVILVGPSGSGKSCLANIWSDKS 88 (246)
Q Consensus 66 ~l~i~G~~GsGKTHLl~a~~~~~ 88 (246)
.+=|.|++|||||.+++.+.++.
T Consensus 5 iIgIaGgSgSGKTT~a~~i~~~l 27 (210)
T PTZ00301 5 VIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99996887678999999999998
No 437
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=95.14 E-value=0.024 Score=34.36 Aligned_cols=28 Identities=39% Similarity=0.654 Sum_probs=23.7
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 1678849998787778688999999862
Q gi|254780567|r 61 SWPSRVVILVGPSGSGKSCLANIWSDKS 88 (246)
Q Consensus 61 ~~~~~~l~i~G~~GsGKTHLl~a~~~~~ 88 (246)
=.|+..+-|.||+|||||.|++.++.-+
T Consensus 358 i~~Ge~vaiVG~SGsGKSTL~~LL~gly 385 (585)
T PRK13657 358 AKPGQTVAIVGPTGAGKSTLINLLHRVF 385 (585)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 7599889998898986999999986015
No 438
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=95.14 E-value=0.015 Score=35.61 Aligned_cols=47 Identities=19% Similarity=0.219 Sum_probs=32.4
Q ss_pred CCCCCCCEEECCCH-HHHHH-----HHHHHHCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 66884541653618-99999-----9985101678849998787778688999
Q gi|254780567|r 36 LGISRDDLLVHSAI-EQAVR-----LIDSWPSWPSRVVILVGPSGSGKSCLAN 82 (246)
Q Consensus 36 ~~~~~dnFiv~~~N-~~A~~-----~i~~~~~~~~~~l~i~G~~GsGKTHLl~ 82 (246)
..|+||..|-..+. +..|+ ++....++-+-.++-||..||||||-+.
T Consensus 48 ~~f~FD~vf~~~~tQ~~Vy~~~~~plv~~~l~G~n~ti~aYGqTGSGKTyTm~ 100 (333)
T cd01371 48 KVFTFDAVYDPNSTQEDVYNETARPLVDSVLEGYNGTIFAYGQTGTGKTFTME 100 (333)
T ss_pred CEEECCEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEECC
T ss_conf 26664668699999899999998999999848874489974368998717746
No 439
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=95.14 E-value=0.02 Score=34.75 Aligned_cols=26 Identities=27% Similarity=0.539 Sum_probs=22.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 67884999878777868899999986
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.++..+-|.||+|||||.|++.++..
T Consensus 32 ~~Gei~~iiGpnGsGKSTLlk~i~Gl 57 (269)
T PRK11831 32 PRGKITAIMGPSGIGKTTLLRLIGGQ 57 (269)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 79989999939997599999999679
No 440
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.13 E-value=0.021 Score=34.67 Aligned_cols=32 Identities=28% Similarity=0.415 Sum_probs=27.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 99987877786889999998627620135676
Q gi|254780567|r 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAK 98 (246)
Q Consensus 67 l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~ 98 (246)
+-|-||+|||||.++..++++.+..+++....
T Consensus 2 IaIdGpagsGKsT~ak~lA~~l~~~~ldtG~i 33 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGI 33 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCEEECCCCC
T ss_conf 88868997898999999999909907766542
No 441
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.13 E-value=0.022 Score=34.58 Aligned_cols=27 Identities=44% Similarity=0.593 Sum_probs=22.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 678849998787778688999999862
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDKS 88 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~~ 88 (246)
.++..+-|.|++|||||.|+++++...
T Consensus 26 ~~Ge~i~ivG~sGsGKSTLl~ll~gl~ 52 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 599899999999983999999997677
No 442
>PRK13542 consensus
Probab=95.09 E-value=0.024 Score=34.33 Aligned_cols=26 Identities=35% Similarity=0.644 Sum_probs=22.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 67884999878777868899999986
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.++..+.|.||.|+|||.|+++++..
T Consensus 42 ~~Gei~~liGpNGaGKTTLlk~l~Gl 67 (224)
T PRK13542 42 APGDLLQVMGPNGSGKTSLLRVLSGL 67 (224)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 59979999999999999999999579
No 443
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.08 E-value=0.029 Score=33.81 Aligned_cols=30 Identities=23% Similarity=0.334 Sum_probs=20.3
Q ss_pred HHHHHCC---CCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 9851016---78849998787778688999999
Q gi|254780567|r 56 IDSWPSW---PSRVVILVGPSGSGKSCLANIWS 85 (246)
Q Consensus 56 i~~~~~~---~~~~l~i~G~~GsGKTHLl~a~~ 85 (246)
++....+ ++...-|||++|+|||+|+.-+|
T Consensus 8 lD~~L~GGi~~G~itEi~G~~GsGKTql~lqla 40 (235)
T cd01123 8 LDELLGGGIETGSITEIFGEFGSGKTQLCHQLA 40 (235)
T ss_pred HHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 996507996478799999999984999999999
No 444
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.08 E-value=0.023 Score=34.39 Aligned_cols=27 Identities=37% Similarity=0.538 Sum_probs=22.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 678849998787778688999999862
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDKS 88 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~~ 88 (246)
.++..+|+.||+|+|||.|++-++..-
T Consensus 26 ~~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 26 PKGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 686089986788887899999998413
No 445
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.07 E-value=0.02 Score=34.86 Aligned_cols=25 Identities=36% Similarity=0.467 Sum_probs=21.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 6788499987877786889999998
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSD 86 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~ 86 (246)
.++..+-|.||+|||||.|++.++.
T Consensus 31 ~~GE~v~iiG~nGsGKSTLl~~l~G 55 (287)
T PRK13637 31 EDGEFVALIGHTGSGKSTLIQHLNG 55 (287)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 7998999999999399999999973
No 446
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.07 E-value=0.022 Score=34.52 Aligned_cols=26 Identities=42% Similarity=0.583 Sum_probs=22.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 67884999878777868899999986
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.++..+-|.||+|||||.|+++++..
T Consensus 24 k~GEi~gLiGpNGaGKSTLlk~i~Gl 49 (255)
T cd03236 24 REGQVLGLVGPNGIGKSTALKILAGK 49 (255)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 89809999899997099999999679
No 447
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=95.07 E-value=0.023 Score=34.40 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=21.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 6788499987877786889999998
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSD 86 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~ 86 (246)
.++..+-|-||+|||||.|+++++.
T Consensus 29 ~~Gei~~iiG~sGsGKSTLl~~i~g 53 (257)
T PRK10619 29 NAGDVISIIGSSGSGKSTFLRCINF 53 (257)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 7997999998999819999999965
No 448
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=95.06 E-value=0.011 Score=36.35 Aligned_cols=37 Identities=11% Similarity=0.267 Sum_probs=26.6
Q ss_pred HHHHHHHHCCCC-CEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 999985101678-8499987877786889999998627
Q gi|254780567|r 53 VRLIDSWPSWPS-RVVILVGPSGSGKSCLANIWSDKSR 89 (246)
Q Consensus 53 ~~~i~~~~~~~~-~~l~i~G~~GsGKTHLl~a~~~~~~ 89 (246)
++|+..+-.... --+++-|++|+|||.|++.+++..-
T Consensus 2 ~~~~~~~k~~~~~~Ki~ilG~~~sGKTsll~~l~~~~~ 39 (173)
T cd04155 2 LSLLRKLRKSSEEPRILILGLDNAGKTTILKQLASEDI 39 (173)
T ss_pred HHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 67887765568775899997999988999999856998
No 449
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.06 E-value=0.022 Score=34.54 Aligned_cols=25 Identities=28% Similarity=0.570 Sum_probs=21.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 7884999878777868899999986
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
++..+-|.||.|||||.|+++++..
T Consensus 24 ~GEiv~liGpNGaGKSTLlk~l~Gl 48 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 7989999979997699999999778
No 450
>PRK03839 putative kinase; Provisional
Probab=95.06 E-value=0.028 Score=33.92 Aligned_cols=31 Identities=16% Similarity=0.333 Sum_probs=25.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 9998787778688999999862762013567
Q gi|254780567|r 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIA 97 (246)
Q Consensus 67 l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~ 97 (246)
+.|.|.||+|||.++..++++.+..++....
T Consensus 3 I~ITGTPGtGKTTva~~La~~lg~~~i~v~~ 33 (180)
T PRK03839 3 IAITGTPGVGKTTISKLLAEKLGYEYVNLRD 33 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCEEEEHHH
T ss_conf 9997899999899999999976987987999
No 451
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=95.06 E-value=0.017 Score=35.31 Aligned_cols=48 Identities=19% Similarity=0.158 Sum_probs=30.6
Q ss_pred CCCCCCCCEEECC-CHHHHHHHH----HHHHCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 7668845416536-189999999----85101678849998787778688999
Q gi|254780567|r 35 CLGISRDDLLVHS-AIEQAVRLI----DSWPSWPSRVVILVGPSGSGKSCLAN 82 (246)
Q Consensus 35 ~~~~~~dnFiv~~-~N~~A~~~i----~~~~~~~~~~l~i~G~~GsGKTHLl~ 82 (246)
...|+||.-|-.. +++..|+.+ +...++-+-.++-||..||||||-+.
T Consensus 44 ~~~f~FD~Vf~~~~tQ~~vy~~v~plv~~~l~G~n~ti~aYGqTGSGKTyTm~ 96 (329)
T cd01366 44 KKSFSFDRVFDPDASQEDVFEEVSPLVQSALDGYNVCIFAYGQTGSGKTYTME 96 (329)
T ss_pred CEEEECCEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEC
T ss_conf 60777686739999989999999999999867772489964789999854726
No 452
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=95.04 E-value=0.021 Score=34.66 Aligned_cols=27 Identities=33% Similarity=0.473 Sum_probs=23.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 678849998787778688999999862
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDKS 88 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~~ 88 (246)
.|+..+-|.||+|||||.|++-++.-+
T Consensus 347 ~~Ge~vaiVG~SGsGKSTL~~LL~r~y 373 (547)
T PRK10522 347 KRGELLFLIGGNGSGKSTLAMLLTGLY 373 (547)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 599889998999997799999982896
No 453
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.04 E-value=0.036 Score=33.20 Aligned_cols=35 Identities=26% Similarity=0.379 Sum_probs=24.1
Q ss_pred HHHHHHHCC---CCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 999851016---78849998787778688999999862
Q gi|254780567|r 54 RLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKS 88 (246)
Q Consensus 54 ~~i~~~~~~---~~~~l~i~G~~GsGKTHLl~a~~~~~ 88 (246)
+.+.....+ ....++|.||+|+|||.|+..++...
T Consensus 65 ~~~k~AA~g~~~~k~IllL~GPvGsGKStl~~~Lk~~l 102 (361)
T smart00763 65 NYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred HHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99999984467125699998899887799999999999
No 454
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=95.02 E-value=0.036 Score=33.25 Aligned_cols=37 Identities=24% Similarity=0.450 Sum_probs=27.3
Q ss_pred HHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 9851016788499987877786889999998627620
Q gi|254780567|r 56 IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTR 92 (246)
Q Consensus 56 i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~ 92 (246)
+..+...|..-+.+.||.|||||.=+.|.-.+-|...
T Consensus 119 ~~~~a~~~~GLiLVTGPTGSGKSTTlAsmIDyIN~~~ 155 (350)
T TIGR01420 119 LRELAERPRGLILVTGPTGSGKSTTLASMIDYINKNK 155 (350)
T ss_pred HHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf 9999836699389876889867899999997874038
No 455
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=95.02 E-value=0.022 Score=34.54 Aligned_cols=26 Identities=35% Similarity=0.456 Sum_probs=22.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 67884999878777868899999986
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.++..+-|-||+|||||.|+++++.-
T Consensus 36 ~~GEiv~LiG~nGaGKSTLlr~i~Gl 61 (257)
T PRK11247 36 PAGQFVAVVGRSGCGKSTLLRLLAGL 61 (257)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 79989999989988899999999658
No 456
>PRK10646 putative ATPase; Provisional
Probab=95.02 E-value=0.077 Score=31.19 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=23.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 788499987877786889999998627
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDKSR 89 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~~~ 89 (246)
++..++|.|+-|+|||++.+++++..+
T Consensus 27 ~g~vi~L~G~LGaGKTtf~r~i~~~lg 53 (153)
T PRK10646 27 GATVIYLYGDLGAGKTTFSRGFLQALG 53 (153)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 997999988887899999999999849
No 457
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=95.01 E-value=0.026 Score=34.10 Aligned_cols=26 Identities=38% Similarity=0.493 Sum_probs=22.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 67884999878777868899999986
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.++..+-|.|++|||||.|++++..-
T Consensus 28 ~~Ge~vaIvG~sGsGKSTLl~lL~gl 53 (275)
T cd03289 28 SPGQRVGLLGRTGSGKSTLLSAFLRL 53 (275)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 79999999999999799999999603
No 458
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=95.01 E-value=0.029 Score=33.78 Aligned_cols=27 Identities=41% Similarity=0.458 Sum_probs=23.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 678849998787778688999999862
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDKS 88 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~~ 88 (246)
.++..+-|.||+|||||.|++.++.-+
T Consensus 365 ~~Ge~vaIVG~SGsGKSTL~~LL~rly 391 (593)
T PRK10790 365 PSRNFVALVGHTGSGKSTLASLLMGYY 391 (593)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 899789987999886899999999855
No 459
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=95.01 E-value=0.13 Score=29.73 Aligned_cols=178 Identities=15% Similarity=0.139 Sum_probs=89.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH-CCCCHHHHHHH----------HHH----------HHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 49998787778688999999862-76201356764----------445----------4666666533433210037610
Q gi|254780567|r 66 VVILVGPSGSGKSCLANIWSDKS-RSTRFSNIAKS----------LDS----------ILIDTRKPVLLEDIDLLDFNDT 124 (246)
Q Consensus 66 ~l~i~G~~GsGKTHLl~a~~~~~-~~~~~~~~~~~----------~~~----------~~~~~~~~i~iddi~~~~~~ee 124 (246)
.+.|.|.||.|||+|++.+++-. .++|.+....+ ... .........|||.++.++.+..
T Consensus 321 nILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~~dr 400 (682)
T COG1241 321 HILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNEEDR 400 (682)
T ss_pred EEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCEEEEEECCCCCEEEEECCEEEEECCCEEEEEECCCCCHHHH
T ss_conf 69981798251999999988648840797264125457306999706776078867779992497799970567776789
Q ss_pred HHHHH-------------HHHHHCCCCCEEEEECCC---------CCCHHHHHHHHHHHHHHCCEEEE-CCCC-HHHHH-
Q ss_conf 33545-------------554311234215640354---------32002234566788521222450-7889-78999-
Q gi|254780567|r 125 QLFHI-------------INSIHQYDSSLLMTARTF---------PVSWGVCLPDLCSRLKAATVVKI-SLPD-DDFLE- 179 (246)
Q Consensus 125 ~lf~l-------------~n~~~~~~~~iilts~~~---------p~~~~~~l~DL~SRl~~g~~~~I-~~pd-de~~~- 179 (246)
.-+|- ++......+.++-+++.. |.+.-...+.|.|||=-..++.= +.++ |+.+.
T Consensus 401 ~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~ 480 (682)
T COG1241 401 VAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAE 480 (682)
T ss_pred HHHHHHHHHCEEEECCCCEEEECCHHHHHHHHHCCCCCCCCCCCCHHHHCCCCHHHHHHCCEEEEECCCCCCCCHHHHHH
T ss_conf 99999987527512055425411144445665188777679999978855898357751775477057888533599999
Q ss_pred HHHHHHH-----------------------------HHCC-C--CCCHHHHHHHHHCC----------------CCCHHH
Q ss_conf 9999986-----------------------------6628-9--79889999999406----------------679899
Q gi|254780567|r 180 KVIVKMF-----------------------------ADRQ-I--FIDKKLAAYIVQRM----------------ERSLVF 211 (246)
Q Consensus 180 ~il~k~~-----------------------------~~r~-i--~l~~~v~~yl~~r~----------------~Rs~~~ 211 (246)
.++..+. -.|+ + .+++++.++|.+.+ +=+.+.
T Consensus 481 hil~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~Rq 560 (682)
T COG1241 481 HILDKHRGEEPEETISLDGVDEVEERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQ 560 (682)
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
T ss_conf 99998634565322333322222346589999999987505896128999999999998765201223456754561999
Q ss_pred HHHHHHHHH-HHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 999999999-99998477878899999998674
Q gi|254780567|r 212 AEKLVDKMD-NLALSRGMGITRSLAAEVLKETQ 243 (246)
Q Consensus 212 l~~~l~~Ld-~~sl~~kr~ITi~lvk~vL~~~~ 243 (246)
+++++..-. .+.+....-+|..-|+++++-..
T Consensus 561 LEsiiRLaeA~Ak~rLS~~V~~eD~~eAi~lv~ 593 (682)
T COG1241 561 LESIIRLAEAHAKMRLSDVVEEEDVDEAIRLVD 593 (682)
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 999999999988654447778899999999999
No 460
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=95.01 E-value=0.025 Score=34.17 Aligned_cols=25 Identities=32% Similarity=0.606 Sum_probs=20.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 7884999878777868899999986
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
..+...|+||.|+|||.|+-|++-.
T Consensus 24 ~~gi~lI~G~nGsGKSSIldAI~~A 48 (908)
T COG0419 24 DSGIFLIVGPNGAGKSSILDAITFA 48 (908)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 8883799899999788999999999
No 461
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=95.00 E-value=0.025 Score=34.19 Aligned_cols=24 Identities=29% Similarity=0.627 Sum_probs=21.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 788499987877786889999998
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSD 86 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~ 86 (246)
++..++|-||.|+|||.|+++++-
T Consensus 27 ~Ge~~~i~G~NG~GKTtLLRilaG 50 (209)
T COG4133 27 AGEALQITGPNGAGKTTLLRILAG 50 (209)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 887799989998758899999971
No 462
>PRK12288 ribosome-associated GTPase; Reviewed
Probab=95.00 E-value=0.024 Score=34.36 Aligned_cols=45 Identities=31% Similarity=0.420 Sum_probs=31.0
Q ss_pred CCEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 54165361899999998510167884999878777868899999986
Q gi|254780567|r 41 DDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 41 dnFiv~~~N~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.-+.++..+...++.+..+. .++..++.|++|+|||.|++++...
T Consensus 186 ~v~~~Sa~~~~gl~~L~~~L--~~ktsvf~GqSGVGKSSLiN~L~p~ 230 (344)
T PRK12288 186 RVLMVSSHTGEGLEPLEAAL--TGRISIFVGQSGVGKSSLINALLPE 230 (344)
T ss_pred EEEEEECCCCCCHHHHHHHH--CCCEEEEEECCCCCHHHHHHHCCCH
T ss_conf 39997368862899999987--6785999806876788887610753
No 463
>PRK03918 chromosome segregation protein; Provisional
Probab=94.99 E-value=0.025 Score=34.21 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=19.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 88499987877786889999998
Q gi|254780567|r 64 SRVVILVGPSGSGKSCLANIWSD 86 (246)
Q Consensus 64 ~~~l~i~G~~GsGKTHLl~a~~~ 86 (246)
.....|+||.|||||.|+.|++-
T Consensus 23 ~Gi~~I~G~nGsGKStIlDAI~~ 45 (882)
T PRK03918 23 SGINLIIGQNGSGKSSLLDAILV 45 (882)
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
T ss_conf 99279889999988999999999
No 464
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.99 E-value=0.027 Score=34.05 Aligned_cols=26 Identities=38% Similarity=0.625 Sum_probs=22.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 67884999878777868899999986
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.++..+-|-||.|||||.|+++++.-
T Consensus 25 ~~Gei~~iiG~nGaGKSTLlk~i~Gl 50 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 49979999889999899999999646
No 465
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.97 E-value=0.083 Score=31.01 Aligned_cols=130 Identities=14% Similarity=0.183 Sum_probs=60.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHH-----------HHH-HHHHHHHHCC-CCCC--HHH
Q ss_conf 999878777868899999986276201-----3567644454666-----------666-5334332100-3761--033
Q gi|254780567|r 67 VILVGPSGSGKSCLANIWSDKSRSTRF-----SNIAKSLDSILID-----------TRK-PVLLEDIDLL-DFND--TQL 126 (246)
Q Consensus 67 l~i~G~~GsGKTHLl~a~~~~~~~~~~-----~~~~~~~~~~~~~-----------~~~-~i~iddi~~~-~~~e--e~l 126 (246)
+=|-|++|||||.+++.++...+.... +..+......... +++ -+..+.++.+ .+.. .-.
T Consensus 11 IgIaG~SgSGKTTv~~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g~~v~~P~ 90 (218)
T COG0572 11 IGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQGKPVDLPV 90 (218)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHCCHHHCCCCCCCCHHHHCHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99867987788999999999828675247652232025301667553785744823436899999999997699224564
Q ss_pred HHHHHHHHC------CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 545554311------23421564035432002234566788521222450788978999999998666289798899999
Q gi|254780567|r 127 FHIINSIHQ------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 (246)
Q Consensus 127 f~l~n~~~~------~~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~y 200 (246)
+....+... ....+|+.-...+ ...++|+..+-.-. =+..|.|.-+..-+.+-...||-.++.=+-+|
T Consensus 91 yd~~~~~r~~~~i~~~p~~VIIvEGi~~----l~d~~lr~~~d~kI--fvdt~~D~RliRri~RD~~~rg~~~~~vi~qy 164 (218)
T COG0572 91 YDYKTHTREPETIKVEPNDVVIVEGILL----LYDERLRDLMDLKI--FVDTDADVRLIRRIKRDVQERGRDLESVIEQY 164 (218)
T ss_pred CCHHCCCCCCCCCCCCCCCEEEEECCCC----CCCHHHHHHCCEEE--EEECCCCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 2031363257733138972899942300----15076776606789--99778327889988877988199989999999
Q ss_pred HH
Q ss_conf 99
Q gi|254780567|r 201 IV 202 (246)
Q Consensus 201 l~ 202 (246)
.-
T Consensus 165 ~~ 166 (218)
T COG0572 165 VK 166 (218)
T ss_pred HH
T ss_conf 98
No 466
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=94.97 E-value=0.026 Score=34.13 Aligned_cols=26 Identities=35% Similarity=0.478 Sum_probs=22.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 67884999878777868899999986
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.++..+-|.||.|||||.|+++++..
T Consensus 35 ~~Ge~~~liG~NGaGKSTLl~~l~gl 60 (265)
T PRK10575 35 PAGKVTGLIGHNGSGKSTLLKMLGRH 60 (265)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 79989999999998099999999568
No 467
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=94.96 E-value=0.027 Score=34.04 Aligned_cols=26 Identities=38% Similarity=0.700 Sum_probs=22.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 67884999878777868899999986
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.++..+-|-||+|||||.|+++++..
T Consensus 25 ~~Gei~~iiG~nGaGKSTLl~~i~G~ 50 (248)
T PRK09580 25 RPGEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 49979999999999999999998377
No 468
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.95 E-value=0.025 Score=34.22 Aligned_cols=25 Identities=32% Similarity=0.618 Sum_probs=22.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 6788499987877786889999998
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSD 86 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~ 86 (246)
.++..+-|-||+|+|||.|+++++.
T Consensus 31 ~~Ge~~~llGpnGaGKSTLl~~l~g 55 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHC
T ss_conf 2883999999999988999999837
No 469
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.95 E-value=0.025 Score=34.25 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=22.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 67884999878777868899999986
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.++..+-|.|++|||||.|++.++.-
T Consensus 31 ~~Ge~~aiiG~sGsGKSTL~~~l~Gl 56 (277)
T PRK13642 31 TKGEWVSIIGQNGSGKSTTARLIDGL 56 (277)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 89989999999996899999999638
No 470
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.95 E-value=0.023 Score=34.42 Aligned_cols=32 Identities=22% Similarity=0.239 Sum_probs=26.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 99987877786889999998627620135676
Q gi|254780567|r 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAK 98 (246)
Q Consensus 67 l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~ 98 (246)
+.|.|+||||||.++..++++.+-.++++.+.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~i 34 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVSAGTI 34 (179)
T ss_pred EEECCCCCCCCHHHHHHHHHHHCCCEEECCHH
T ss_conf 99617999970279999999829715621279
No 471
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=94.95 E-value=0.026 Score=34.07 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=20.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 7884999878777868899999986
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
++....|.||.|+|||.|++++...
T Consensus 21 ~~~itaivG~NGaGKSTLl~~i~~~ 45 (204)
T cd03240 21 FSPLTLIVGQNGAGKTTIIEALKYA 45 (204)
T ss_pred ECCEEEEECCCCCCHHHHHHHHHHC
T ss_conf 0888999989999999999998630
No 472
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=94.94 E-value=0.027 Score=34.00 Aligned_cols=33 Identities=24% Similarity=0.423 Sum_probs=28.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHH
Q ss_conf 884999878777868899999986276201356
Q gi|254780567|r 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNI 96 (246)
Q Consensus 64 ~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~ 96 (246)
.+.++|+||.+||||-|+-.++++.++..++..
T Consensus 3 ~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~D 35 (308)
T COG0324 3 PKLIVIAGPTASGKTALAIALAKRLGGEIISLD 35 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCEEECC
T ss_conf 637999898875778999999998299289302
No 473
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.94 E-value=0.12 Score=29.93 Aligned_cols=23 Identities=35% Similarity=0.582 Sum_probs=17.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 84999878777868899999986
Q gi|254780567|r 65 RVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 65 ~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
..+++.|+||||||.+++-+++.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~ 24 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKE 24 (261)
T ss_pred CEEEEECCCCCCCHHHHHHHHHH
T ss_conf 56998269998801789999999
No 474
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=94.92 E-value=0.028 Score=33.94 Aligned_cols=27 Identities=33% Similarity=0.415 Sum_probs=22.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 678849998787778688999999862
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDKS 88 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~~ 88 (246)
.++..+.|.|++|||||.|++.+..-.
T Consensus 45 ~~Ge~vaIvG~sGsGKSTL~~ll~gl~ 71 (257)
T cd03288 45 KPGQKVGICGRTGSGKSSLSLAFFRMV 71 (257)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 799999999999981999999996056
No 475
>PRK06217 hypothetical protein; Validated
Probab=94.92 E-value=0.029 Score=33.77 Aligned_cols=156 Identities=17% Similarity=0.178 Sum_probs=78.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHCC
Q ss_conf 849998787778688999999862762013567644454666666533433210037--------610335455543112
Q gi|254780567|r 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF--------NDTQLFHIINSIHQY 136 (246)
Q Consensus 65 ~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iddi~~~~~--------~ee~lf~l~n~~~~~ 136 (246)
+-++|+|.+|||||.|++.++...+..++. +|+..-..+ ..++=..++-.....
T Consensus 2 ~rI~i~G~sGsGkSTla~~La~~l~~~~~~------------------lD~~~W~p~~~pf~~kR~~~eR~~ll~~~~~~ 63 (185)
T PRK06217 2 MRIHITGASGSGTTTLGAALAEALDLPHLD------------------TDDFFWLPTDPPFTTKREPEERLRLLLEDLRD 63 (185)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEE------------------CCCCEECCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 679997899887899999999975989686------------------45553568999756437999999999998637
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCC------HHHHHHH---HH----
Q ss_conf 3421564035432002234566788521222450788978999999998666289798------8999999---94----
Q gi|254780567|r 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID------KKLAAYI---VQ---- 203 (246)
Q Consensus 137 ~~~iilts~~~p~~~~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~------~~v~~yl---~~---- 203 (246)
....|++++..- + ...+..|+-. ++=|..|.+-.+..+.++-....|=.+- ..-.+|+ .+
T Consensus 64 ~~~WV~sGs~~~--w---gd~l~p~~Dl--vVfL~lP~~irl~Rlr~RE~~RyG~ri~pgGdm~~~~~~Fl~Wa~~YD~~ 136 (185)
T PRK06217 64 SEGWILSGSLLG--W---GDPLEPLFDL--VVFLYIPPELRLERLRLREEQRYGNRILPGGDMHKASLEFLEWAAQYDNA 136 (185)
T ss_pred CCCEEEECCCCC--C---CCCCCCCCCE--EEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 999899577523--2---3211343568--99982898999999999999860786689941888889999999867889
Q ss_pred -CCCCCHHHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHCC
Q ss_conf -0667989999999999999998-47787889999999867418
Q gi|254780567|r 204 -RMERSLVFAEKLVDKMDNLALS-RGMGITRSLAAEVLKETQQC 245 (246)
Q Consensus 204 -r~~Rs~~~l~~~l~~Ld~~sl~-~kr~ITi~lvk~vL~~~~~~ 245 (246)
...|+...-+.-+..+.---+. .+..-.-.++.+||....++
T Consensus 137 ~~~gRsl~~He~Wl~~~~cPVlrldg~~~~~~~~~~vl~~~~~~ 180 (185)
T PRK06217 137 GPEGRSLAAHEQWLADQSCPVLRLDGDLTVEERLAQVLAALNSA 180 (185)
T ss_pred CCCCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf 87764499999999528986799769898999999999997425
No 476
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.91 E-value=0.026 Score=34.14 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=21.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 6788499987877786889999998
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSD 86 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~ 86 (246)
.++..+-|.||+|||||.|++.++.
T Consensus 32 ~~Ge~vaiiG~nGsGKSTL~~~l~G 56 (283)
T PRK13640 32 PRGSWTALIGHNGSGKSTISKLING 56 (283)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 8999999999999879999999964
No 477
>PRK09354 recA recombinase A; Provisional
Probab=94.90 E-value=0.083 Score=31.02 Aligned_cols=92 Identities=18% Similarity=0.230 Sum_probs=44.9
Q ss_pred CCCHHHHHHHHHHHHCCCC-CEEEEECCCCCCHHHHHH-HHHHH--HC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHC-
Q ss_conf 3618999999985101678-849998787778688999-99986--27--62013567644454666666533433210-
Q gi|254780567|r 46 HSAIEQAVRLIDSWPSWPS-RVVILVGPSGSGKSCLAN-IWSDK--SR--STRFSNIAKSLDSILIDTRKPVLLEDIDL- 118 (246)
Q Consensus 46 ~~~N~~A~~~i~~~~~~~~-~~l~i~G~~GsGKTHLl~-a~~~~--~~--~~~~~~~~~~~~~~~~~~~~~i~iddi~~- 118 (246)
=++--++++.+-....+|. +..-||||++||||+|+- ++++. .+ +.|++.. ..++........ +.+|++..
T Consensus 41 isTGsl~LD~aLGiGG~P~GRivEi~G~esSGKTtlal~~iaeaQk~Gg~~a~iDaE-~ald~~~a~~lG-Vd~d~llv~ 118 (350)
T PRK09354 41 ISTGSLALDIALGIGGLPKGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAE-HALDPVYAKKLG-VDIDNLLVS 118 (350)
T ss_pred ECCCCHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEC-CCCCHHHHHHCC-CCHHHEEEE
T ss_conf 447717899987589967870899988987779999999999999759947999600-027988999849-771571785
Q ss_pred CCCCCHHHHHHHHHHHCCCCC
Q ss_conf 037610335455543112342
Q gi|254780567|r 119 LDFNDTQLFHIINSIHQYDSS 139 (246)
Q Consensus 119 ~~~~ee~lf~l~n~~~~~~~~ 139 (246)
.+..-|..+.+...+..++..
T Consensus 119 qpd~~Eqal~i~e~Lvrsg~v 139 (350)
T PRK09354 119 QPDTGEQALEIADALVRSGAV 139 (350)
T ss_pred CCCHHHHHHHHHHHHHHCCCC
T ss_conf 686799999999999854884
No 478
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=94.90 E-value=0.03 Score=33.72 Aligned_cols=28 Identities=39% Similarity=0.459 Sum_probs=23.6
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 0167884999878777868899999986
Q gi|254780567|r 60 PSWPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 60 ~~~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.-.|+..+-|.||+|||||.|++.++..
T Consensus 372 ~i~~Ge~vaIVG~SGsGKSTl~~LL~g~ 399 (588)
T PRK11174 372 TLPAGQRVALVGPSGAGKTSLLNALLGF 399 (588)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9749978999899986499999999872
No 479
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.89 E-value=0.035 Score=33.32 Aligned_cols=28 Identities=25% Similarity=0.213 Sum_probs=23.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 6788499987877786889999998627
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDKSR 89 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~~~ 89 (246)
.++..+-|.|++|||||.|++.++....
T Consensus 32 ~~Ge~v~ivG~sGsGKSTLl~ll~g~~~ 59 (207)
T cd03369 32 KAGEKIGIVGRTGAGKSTLILALFRFLE 59 (207)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 6999999999999879999999998728
No 480
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.89 E-value=0.026 Score=34.07 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=22.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 67884999878777868899999986
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.++..+-|.|++|||||.|++.++.-
T Consensus 28 ~~GE~vaivG~nGsGKSTL~~~l~Gl 53 (276)
T PRK13650 28 KQGEWLSIIGHNGSGKSTTVRLIDGL 53 (276)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 89989999999998799999999738
No 481
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.89 E-value=0.03 Score=33.76 Aligned_cols=27 Identities=37% Similarity=0.353 Sum_probs=22.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 678849998787778688999999862
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDKS 88 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~~ 88 (246)
.++..+-|.|++|||||.|++.++.-.
T Consensus 28 ~~Ge~v~ivG~sGsGKSTLl~ll~gl~ 54 (221)
T cd03244 28 KPGEKVGIVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 699899999999998999999996797
No 482
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=94.89 E-value=0.028 Score=33.91 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=22.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 67884999878777868899999986
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.++..+-|.|++|||||.|++.+...
T Consensus 61 ~~Ge~vaIVG~sGSGKSTLl~lL~gl 86 (282)
T cd03291 61 EKGEMLAITGSTGSGKTSLLMLILGE 86 (282)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 49999999999998199999999578
No 483
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.88 E-value=0.025 Score=34.18 Aligned_cols=29 Identities=38% Similarity=0.619 Sum_probs=25.4
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 10167884999878777868899999986
Q gi|254780567|r 59 WPSWPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 59 ~~~~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
+.-||+..+-|.|++|||||.|+.+++..
T Consensus 27 F~l~PGeVLgiVGESGSGKtTlL~~is~r 55 (258)
T COG4107 27 FDLYPGEVLGIVGESGSGKTTLLKCISGR 55 (258)
T ss_pred EEECCCCEEEEEECCCCCHHHHHHHHHCC
T ss_conf 32227737999705887577699998645
No 484
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.87 E-value=0.028 Score=33.91 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=22.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 67884999878777868899999986
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.++..+-|.|++|||||.|++.+..-
T Consensus 34 ~~Ge~vaivG~nGsGKSTLlk~l~Gl 59 (273)
T PRK13632 34 NEGEYVAILGHNGSGKSTISKILTGL 59 (273)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 49989999999998699999999738
No 485
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=94.86 E-value=0.028 Score=33.88 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=21.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 6788499987877786889999998
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSD 86 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~ 86 (246)
.++..+-|.|++|||||.|++.++.
T Consensus 35 ~~GE~v~iiG~nGsGKSTL~r~l~g 59 (281)
T PRK13633 35 KKGEFLVILGHNGSGKSTIAKHMNA 59 (281)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 7998999999999849999999975
No 486
>COG3911 Predicted ATPase [General function prediction only]
Probab=94.83 E-value=0.027 Score=34.02 Aligned_cols=30 Identities=27% Similarity=0.326 Sum_probs=24.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCHH
Q ss_conf 849998787778688999999862762013
Q gi|254780567|r 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 (246)
Q Consensus 65 ~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~ 94 (246)
+.++|.|.||+|||.|+.+++...-+.+..
T Consensus 10 ~~fIltGgpGaGKTtLL~aLa~~Gfatvee 39 (183)
T COG3911 10 KRFILTGGPGAGKTTLLAALARAGFATVEE 39 (183)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCEEECC
T ss_conf 389983799976899999999758635013
No 487
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=94.83 E-value=0.031 Score=33.66 Aligned_cols=26 Identities=42% Similarity=0.728 Sum_probs=22.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 67884999878777868899999986
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.++..+-|.||.|+|||.|+++++..
T Consensus 26 ~~Gei~~liGpNGaGKSTLlk~i~Gl 51 (257)
T PRK13548 26 RPGEVVAILGPNGAGKSTLLRALSGE 51 (257)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 69989999999998799999998567
No 488
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.82 E-value=0.03 Score=33.72 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=21.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 788499987877786889999998
Q gi|254780567|r 63 PSRVVILVGPSGSGKSCLANIWSD 86 (246)
Q Consensus 63 ~~~~l~i~G~~GsGKTHLl~a~~~ 86 (246)
++..+-|.|++|||||.|++.++.
T Consensus 32 ~Ge~~aiiG~nGsGKSTLl~~l~G 55 (286)
T PRK13646 32 QGKYYAIVGQTGSGKSTLIQNINA 55 (286)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 998999999999819999999970
No 489
>PRK00625 shikimate kinase; Provisional
Probab=94.81 E-value=0.035 Score=33.34 Aligned_cols=31 Identities=16% Similarity=0.202 Sum_probs=26.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 9998787778688999999862762013567
Q gi|254780567|r 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIA 97 (246)
Q Consensus 67 l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~ 97 (246)
++|.|..|||||++.+.++++.+..+++...
T Consensus 3 I~LIG~mGsGKStiGk~LA~~l~~~FvD~D~ 33 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAKFLSLPFFDTDD 33 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEECHH
T ss_conf 9998999998899999999993999577499
No 490
>PRK05480 uridine kinase; Provisional
Probab=94.81 E-value=0.11 Score=30.26 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 999878777868899999986276
Q gi|254780567|r 67 VILVGPSGSGKSCLANIWSDKSRS 90 (246)
Q Consensus 67 l~i~G~~GsGKTHLl~a~~~~~~~ 90 (246)
+-|.|++|||||++++.+++..+.
T Consensus 9 IgIaG~SgSGKTT~a~~L~~~l~~ 32 (209)
T PRK05480 9 IGIAGGSGSGKTTVASTIYEELGD 32 (209)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 999899977899999999998086
No 491
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=94.81 E-value=0.024 Score=34.29 Aligned_cols=50 Identities=22% Similarity=0.267 Sum_probs=32.2
Q ss_pred CCCCCCEEEC--CCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 6884541653--61899999998510167884999878777868899999986
Q gi|254780567|r 37 GISRDDLLVH--SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 37 ~~~~dnFiv~--~~N~~A~~~i~~~~~~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
...++|.-.+ +....+++-+. +.=.|+..+-|.|++|||||.|++.++.-
T Consensus 463 ~i~~~~vsf~y~~~~~~vl~~vs-l~i~~Ge~vaIvG~sGsGKSTL~kll~Gl 514 (694)
T TIGR03375 463 EIEFRNVSFAYPGQETPALDNVS-LTIRPGEKVAIIGRIGSGKSTLLKLLLGL 514 (694)
T ss_pred EEEEEEEEEECCCCCCHHHCCHH-HEECCCCEEEEEECCCCCHHHHHHHHCCC
T ss_conf 49999999987988922213631-18879978999805898788999985567
No 492
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=94.79 E-value=0.026 Score=34.10 Aligned_cols=28 Identities=43% Similarity=0.517 Sum_probs=23.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 6788499987877786889999998627
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDKSR 89 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~~~ 89 (246)
.++..+-|.||+|||||.|++.++.-+.
T Consensus 366 ~~G~~vaiVG~SGsGKSTL~~LL~gly~ 393 (581)
T PRK11176 366 PAGKTVALVGRSGSGKSTIANLLTRFYD 393 (581)
T ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHCC
T ss_conf 9994431228999867899999985366
No 493
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.79 E-value=0.03 Score=33.69 Aligned_cols=22 Identities=36% Similarity=0.607 Sum_probs=17.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 9998787778688999999862
Q gi|254780567|r 67 VILVGPSGSGKSCLANIWSDKS 88 (246)
Q Consensus 67 l~i~G~~GsGKTHLl~a~~~~~ 88 (246)
+.|+||+|+|||.|+..++...
T Consensus 2 ~li~g~~g~GKttl~~~~~~~~ 23 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8999899998999999999998
No 494
>KOG2680 consensus
Probab=94.76 E-value=0.27 Score=27.84 Aligned_cols=111 Identities=14% Similarity=0.155 Sum_probs=74.4
Q ss_pred HHHHHHHHHCCCC-CEEEEE-CCCCCCH--------HHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 3545554311234-215640-3543200--------22345667885212224507889789999999986662897988
Q gi|254780567|r 126 LFHIINSIHQYDS-SLLMTA-RTFPVSW--------GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195 (246)
Q Consensus 126 lf~l~n~~~~~~~-~iilts-~~~p~~~--------~~~l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~ 195 (246)
-|.++|...++.- ++++.+ +.-.... ....-||.-|+ +++.-.|-.++....||...|...++.+++
T Consensus 304 cFsFlNrAlE~d~~PiiimaTNrgit~iRGTn~~SphGiP~D~lDR~---lII~t~py~~~d~~~IL~iRc~EEdv~m~~ 380 (454)
T KOG2680 304 CFSFLNRALENDMAPIIIMATNRGITRIRGTNYRSPHGIPIDLLDRM---LIISTQPYTEEDIKKILRIRCQEEDVEMNP 380 (454)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCEEEEECCCCCCCCCCCHHHHHHH---HEEECCCCCHHHHHHHHHHHHHHHCCCCCH
T ss_conf 99988887650468579997277557760577789888867776441---255256576889999987550052133587
Q ss_pred HHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHH
Q ss_conf 99999994066-798999999999999999847-787889999999
Q gi|254780567|r 196 KLAAYIVQRME-RSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVL 239 (246)
Q Consensus 196 ~v~~yl~~r~~-Rs~~~l~~~l~~Ld~~sl~~k-r~ITi~lvk~vL 239 (246)
++.++|..--. .+++..+.++..-...++..| +-++..-++.+.
T Consensus 381 ~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~~v~~~di~r~y 426 (454)
T KOG2680 381 DALDLLTKIGEATSLRYAIHLITAASLVCLKRKGKVVEVDDIERVY 426 (454)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHH
T ss_conf 8999999861312378999998899999987548565446789999
No 495
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family; InterPro: IPR004346 This family includes the Helicobacter pylori protein CagE (see examples), which together with other proteins from the cag pathogenicity island (PAI), encodes a type IV transporter secretion system. The precise role of CagE is not known, but studies in animal models have shown that it is essential for pathogenesis in Helicobacter pylori induced gastritis and peptic ulceration . Indeed, the expression of the cag PAI has been shown to be essential for stimulating human gastric epithelial cell apoptosis in vitro . Similar type IV transport systems are also found in other bacteria. This family includes proteins from the trb and Vir conjugal transfer systems in Agrobacterium tumefaciens and homologues of VirB proteins from other species.; GO: 0005524 ATP binding.
Probab=94.75 E-value=0.027 Score=34.04 Aligned_cols=26 Identities=31% Similarity=0.530 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 88499987877786889999998627
Q gi|254780567|r 64 SRVVILVGPSGSGKSCLANIWSDKSR 89 (246)
Q Consensus 64 ~~~l~i~G~~GsGKTHLl~a~~~~~~ 89 (246)
...-.|+|++|+|||-|++-++.+..
T Consensus 516 ~GhT~IfG~~G~GKTtLl~fL~a~~~ 541 (931)
T TIGR00929 516 LGHTLIFGPTGSGKTTLLNFLLAQLQ 541 (931)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 38777888889846999999999974
No 496
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.72 E-value=0.03 Score=33.77 Aligned_cols=60 Identities=18% Similarity=0.351 Sum_probs=38.5
Q ss_pred CCCCCCCCCCCCCEEECCCHHH---------HHHHHHHHHCC-----CCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 5888776688454165361899---------99999851016-----788499987877786889999998627
Q gi|254780567|r 30 FSFPRCLGISRDDLLVHSAIEQ---------AVRLIDSWPSW-----PSRVVILVGPSGSGKSCLANIWSDKSR 89 (246)
Q Consensus 30 l~~~~~~~~~~dnFiv~~~N~~---------A~~~i~~~~~~-----~~~~l~i~G~~GsGKTHLl~a~~~~~~ 89 (246)
+|-|..-..-+|+|++|..-.. -|+-+....+. ....+.+.||.|||||.|++.+++..+
T Consensus 49 lPtP~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~Ln 122 (408)
T COG1219 49 LPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILN 122 (408)
T ss_pred CCCHHHHHHHHHHHEECCHHHHCEEEEEEEHHHHHHHCCCCCCCEEEEECCEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99869999986524326254310346641068899860488776353203179988899757799999999848
No 497
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.70 E-value=0.027 Score=34.05 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=20.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 9998787778688999999862762
Q gi|254780567|r 67 VILVGPSGSGKSCLANIWSDKSRST 91 (246)
Q Consensus 67 l~i~G~~GsGKTHLl~a~~~~~~~~ 91 (246)
+=|.|++|||||+|++.+.+.....
T Consensus 2 IgIaG~S~SGKTTla~~L~~~l~~~ 26 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILPNC 26 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 8996888875999999999987998
No 498
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.70 E-value=0.034 Score=33.40 Aligned_cols=25 Identities=32% Similarity=0.385 Sum_probs=21.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 6788499987877786889999998
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSD 86 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~ 86 (246)
.++..+-|.|+.|||||.|++.++.
T Consensus 26 ~~Ge~vaiiG~nGsGKSTL~~~l~G 50 (274)
T PRK13644 26 KKGEYIGIIGKNGSGKSTLALHLNG 50 (274)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 4899999999999809999999970
No 499
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.70 E-value=0.032 Score=33.53 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=21.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 67884999878777868899999986
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.++..+-|.||.|||||.|++.++.-
T Consensus 29 ~~Ge~~aiiG~NGsGKSTLl~~l~Gl 54 (273)
T PRK13647 29 PEGSKTAILGPNGAGKSTLLLHLNGI 54 (273)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 89989999999997599999999669
No 500
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=94.70 E-value=0.035 Score=33.30 Aligned_cols=26 Identities=35% Similarity=0.672 Sum_probs=22.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 67884999878777868899999986
Q gi|254780567|r 62 WPSRVVILVGPSGSGKSCLANIWSDK 87 (246)
Q Consensus 62 ~~~~~l~i~G~~GsGKTHLl~a~~~~ 87 (246)
.++..+-|.||.|+|||.|+++++..
T Consensus 28 ~~Gei~~LiGpNGaGKSTLlk~I~Gl 53 (251)
T PRK09544 28 KPGKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 79979999989998899999999668
Done!