HHsearch alignment for GI: 254780567 and conserved domain: pfam00154

>pfam00154 RecA recA bacterial DNA recombination protein. RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyses an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.

Probab=95.40  E-value=0.06  Score=31.85  Aligned_cols=94  Identities=16%  Similarity=0.216  Sum_probs=44.5

Q ss_pred             CHHHHHHHHHHHHCCCC-CEEEEECCCCCCHHHHHH-HHHHH--HC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-C
Q ss_conf             18999999985101678-849998787778688999-99986--27--620135676444546666665334332100-3
Q gi|254780567|r   48 AIEQAVRLIDSWPSWPS-RVVILVGPSGSGKSCLAN-IWSDK--SR--STRFSNIAKSLDSILIDTRKPVLLEDIDLL-D  120 (246)
Q Consensus        48 ~N~~A~~~i~~~~~~~~-~~l~i~G~~GsGKTHLl~-a~~~~--~~--~~~~~~~~~~~~~~~~~~~~~i~iddi~~~-~  120 (246)
T Consensus        35 tgs~~lD~aLg~GGlP~GRi~ei~G~essGKTtlal~~ia~aQk~gg~~~~iD~E-~a~d~~~a~~lG-VD~~~l~~~qp  112 (322)
T pfam00154        35 TGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAE-HALDPVYAKKLG-VDIDNLLVSQP  112 (322)
T ss_pred             CCHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHH-HHCCHHHHHHCC-CCHHHEEEECC
T ss_conf             5808999987589977870899988987778999999999997349938998536-605988999809-88025389778


Q ss_pred             CCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf             76103354555431123421564
Q gi|254780567|r  121 FNDTQLFHIINSIHQYDSSLLMT  143 (246)
Q Consensus       121 ~~ee~lf~l~n~~~~~~~~iilt  143 (246)
T Consensus       113 d~~Eqal~i~~~li~~~~~~liV  135 (322)
T pfam00154       113 DTGEQALEIADMLVRSGAVDLIV  135 (322)
T ss_pred             CHHHHHHHHHHHHHCCCCCCEEE
T ss_conf             83999999999985379976599