HHsearch alignment for GI: 254780567 and conserved domain: pfam02456
>pfam02456 Adeno_IVa2 Adenovirus IVa2 protein. IVa2 protein can interact with the adenoviral packaging signal and that this interaction involves DNA sequences that have previously been demonstrated to be required for packaging. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter.
Probab=95.43 E-value=0.011 Score=36.49 Aligned_cols=18 Identities=39% Similarity=0.595 Sum_probs=15.4
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 999878777868899999
Q gi|254780567|r 67 VILVGPSGSGKSCLANIW 84 (246)
Q Consensus 67 l~i~G~~GsGKTHLl~a~ 84 (246)
T Consensus 90 ~vVYGPTG~GKSQLlRNl 107 (370)
T pfam02456 90 GVVYGPTGCGKSQLLRNL 107 (370)
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 999889987789999998