HHsearch alignment for GI: 254780567 and conserved domain: pfam03215
>pfam03215 Rad17 Rad17 cell cycle checkpoint protein.
Probab=98.53 E-value=7.6e-06 Score=55.86 Aligned_cols=168 Identities=13% Similarity=0.112 Sum_probs=94.4
Q ss_pred HHHHHHHHCC--CCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHH---------------------------HHHHHHH
Q ss_conf 9999851016--7884999878777868899999986276201356---------------------------7644454
Q gi|254780567|r 53 VRLIDSWPSW--PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNI---------------------------AKSLDSI 103 (246)
Q Consensus 53 ~~~i~~~~~~--~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~---------------------------~~~~~~~ 103 (246)
T Consensus 32 ~~WL~~~~~~~~~~~iLlLtGPaG~GKTTTI~lLAkeLG~ei~EW~NP~~~~~~~~~~q~~d~~g~~~~~~~S~~~~F~e 111 (490)
T pfam03215 32 DHWLKAVFLESNKQLILLLTGPSGCGKSTTVKVLSKELGIEIIEWSNPEYLHNPDNECQKPDFRGDCIVNSLSQMEQFRE 111 (490)
T ss_pred HHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 99999985477773189987989988999999999975968998148654567750221012123457666637777678
Q ss_pred HHH-------------HHHHHHHHHHHCCCC-CCHHHHHHHHHHH-CCCC-CEEEEEC--CCCCCHHH-----------H
Q ss_conf 666-------------666533433210037-6103354555431-1234-2156403--54320022-----------3
Q gi|254780567|r 104 LID-------------TRKPVLLEDIDLLDF-NDTQLFHIINSIH-QYDS-SLLMTAR--TFPVSWGV-----------C 154 (246)
Q Consensus 104 ~~~-------------~~~~i~iddi~~~~~-~ee~lf~l~n~~~-~~~~-~iilts~--~~p~~~~~-----------~ 154 (246)
T Consensus 112 FLlr~~ky~sL~~~~~~kriILIEE~Pn~~~~d~~~fr~~L~~~L~s~~~~PlV~IiSEt~s~~g~~~~~~~~~ta~rLl 191 (490)
T pfam03215 112 FLLRGARYGSLQGGGLKKKLILVEELPNQFYSDAEKFREVIREVLQSIWHLPLIFCLTECNSLEGDNNQDRFGIDAETIM 191 (490)
T ss_pred HHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHC
T ss_conf 87622335654457887359999658874423669999999999970899987999970466667764332321078635
Q ss_pred HHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCC---CCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 456678852122245078897899999999866628---9798899999994066798999999999999999
Q gi|254780567|r 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ---IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 (246)
Q Consensus 155 l~DL~SRl~~g~~~~I~~pdde~~~~il~k~~~~r~---i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl 224 (246)
T Consensus 192 g~eI-l~hp~i~~I~FNpIApT~M~KaL~~I~~kE~~~~~~~~~~~le~Ia~~S~GDIRsA---InsLQF~~~ 260 (490)
T pfam03215 192 TKDI-LIMPRIDTITFNPIAPTFMKKALVRISVQEGKLKSPKSDSKLEVICQEAGGDLRSA---INSLQFSSS 260 (490)
T ss_pred CHHH-HHCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHH---HHHHHHHCC
T ss_conf 9888-70889636986888788999999999998576556752038999998648729999---999998626