>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.

Probab=99.70 E-value=7.6e-16 Score=117.42 Aligned_cols=184 Identities=18% Similarity=0.183 Sum_probs=122.2 Q ss_pred CCCCCCCCCEEECCCHHHHH--HHHHHHH--CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHH--H------ Q ss_conf 77668845416536189999--9998510--1678849998787778688999999862762013567644--4------ Q gi|254780567|r 34 RCLGISRDDLLVHSAIEQAV--RLIDSWP--SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL--D------ 101 (246) Q Consensus 34 ~~~~~~~dnFiv~~~N~~A~--~~i~~~~--~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~--~------ 101 (246) T Consensus 18 lRP~-~l~e~v-GQehl~~~l~~~i~a~~~~~~~l~h~lf~GPPG~GKTTlAriiAk~~~~~~~~~s~~~i~~~~di~~~ 95 (234) T pfam05496 18 LRPR-RLDEYI-GQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKPGDLAAI 95 (234) T ss_pred CCCC-CHHHCC-CHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHH T ss_conf 4989-766606-94999999999999887427776627887899998889999999840875376142666438999999 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCC--------------------EEEEECCCCCCHHHHHHHHHHH Q ss_conf 54666666533433210037610335455543112342--------------------1564035432002234566788 Q gi|254780567|r 102 SILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSS--------------------LLMTARTFPVSWGVCLPDLCSR 161 (246) Q Consensus 102 ~~~~~~~~~i~iddi~~~~~~ee~lf~l~n~~~~~~~~--------------------iilts~~~p~~~~~~l~DL~SR 161 (246) T Consensus 96 l~~~~~~~ILFIDEIHr~nK~qqd~Llp~---vE~g~i~i~ig~~~~A~~~~~e~P~FtLIgATTe~~~l---~~pl~sR 169 (234) T pfam05496 96 LTNLEPGDVLFIDEIHRLNRAVEEILYPA---MEDFRLDIVIGKGPSARSIRLDLPPFTLVGATTRAGLL---TSPLRDR 169 (234) T ss_pred HHHCCCCCEEEEECHHHCCHHHHHHCCCC---CCCCEEEEEECCCCCCEEEECCCCCEEEEEECCCCCCC---CHHHHHH T ss_conf 98458998899966543587688744553---34616999963676632465268975998521566647---7779976 Q ss_pred HHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 521222450788978999999998666289798899999994066798999999999999999847 Q gi|254780567|r 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 (246) Q Consensus 162 l~~g~~~~I~~pdde~~~~il~k~~~~r~i~l~~~v~~yl~~r~~Rs~~~l~~~l~~Ld~~sl~~k 227 (246) T Consensus 170 ~~--i~~~l~~l~~edl~~il~r~~~~l~i~i~~eal~~IA~~s~Gd~R~ALnlLe~v~d~a~~~~ 233 (234) T pfam05496 170 FG--IVLRLEFYSVEELEEIVKRSARILGVEIDEEGAAEIARRSRGTPRIANRLLRRVRDFAQVKG 233 (234) T ss_pred HH--HEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC T ss_conf 21--12442468999999999999998399959999999999779989999899999999998734

HHsearch alignment for GI: 254780567 and conserved domain: pfam05496