HHsearch alignment for GI: 254780567 and conserved domain: smart00350
>smart00350 MCM minichromosome maintenance proteins.
Probab=97.09 E-value=0.011 Score=36.38 Aligned_cols=176 Identities=16% Similarity=0.197 Sum_probs=84.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH-CCCCHHHHHHHH------------H--------HHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 49998787778688999999862-762013567644------------4--------54666666533433210037610
Q gi|254780567|r 66 VVILVGPSGSGKSCLANIWSDKS-RSTRFSNIAKSL------------D--------SILIDTRKPVLLEDIDLLDFNDT 124 (246)
Q Consensus 66 ~l~i~G~~GsGKTHLl~a~~~~~-~~~~~~~~~~~~------------~--------~~~~~~~~~i~iddi~~~~~~ee 124 (246)
T Consensus 238 hiLLvGDPGtgKSqlLk~~~~iaprsvytsG~gsS~aGLTaav~rd~~~ge~~leaGALVlAD~GiccIDEfdKm~~~dr 317 (509)
T smart00350 238 NILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEGGALVLADNGVCCIDEFDKMDDSDR 317 (509)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCEEEEEECCCCCCEEECCCCEECCCCCEEEEEEHHHCCHHHH
T ss_conf 49984699823629999999858860687344455577068999817888378725641205675478521320787789
Q ss_pred HHHH-H------------HHHHHCCCCCEEEEECCCC-CCH--------HH-HHHHHHHHHHHCCEEEECCCCHHHHHHH
Q ss_conf 3354-5------------5543112342156403543-200--------22-3456678852122245078897899999
Q gi|254780567|r 125 QLFH-I------------INSIHQYDSSLLMTARTFP-VSW--------GV-CLPDLCSRLKAATVVKISLPDDDFLEKV 181 (246)
Q Consensus 125 ~lf~-l------------~n~~~~~~~~iilts~~~p-~~~--------~~-~l~DL~SRl~~g~~~~I~~pdde~~~~i 181 (246)
T Consensus 318 ~alhEaMEQQtisiaKaGi~~tL~aR~sV-lAAaNP~~g~yd~~~s~~eni~l~~~LLSRFDLIf~l~-D~~~~~~D~~i 395 (509)
T smart00350 318 TAIHEAMEQQTISIAKAGITTTLNARCSV-LAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVL-DEVDEERDREL 395 (509)
T ss_pred HHHHHHHHHCEEEEECCCEEEEEECCCEE-EEEECCCCCCCCCCCCHHHHCCCCHHHHHHCCEEEEEE-CCCCHHHHHHH
T ss_conf 99999997487787437517998557359-98655655637888999994689803541023899961-58987889999
Q ss_pred ----H-----------------------HHHHH-HC---CCCCCHHHHHHHHHCCC----------------CCHHHHHH
Q ss_conf ----9-----------------------99866-62---89798899999994066----------------79899999
Q gi|254780567|r 182 ----I-----------------------VKMFA-DR---QIFIDKKLAAYIVQRME----------------RSLVFAEK 214 (246)
Q Consensus 182 ----l-----------------------~k~~~-~r---~i~l~~~v~~yl~~r~~----------------Rs~~~l~~ 214 (246)
T Consensus 396 a~hil~~h~~~~~~~~~~~~~~~~~~~lrkYI~yar~~~~P~ls~eA~~~i~~~Y~~~R~~~~~~~~~~~~~iT~RqLEs 475 (509)
T smart00350 396 AKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLES 475 (509)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
T ss_conf 99999987415887545568868999999999999862899789999999999999998564016888861533899999
Q ss_pred HHHHHHHHH-HHHCCCCCHHHHHHHHHHHH
Q ss_conf 999999999-98477878899999998674
Q gi|254780567|r 215 LVDKMDNLA-LSRGMGITRSLAAEVLKETQ 243 (246)
Q Consensus 215 ~l~~Ld~~s-l~~kr~ITi~lvk~vL~~~~ 243 (246)
T Consensus 476 lIRLseA~Akl~l~~~Vt~~Dv~~Ai~L~~ 505 (509)
T smart00350 476 IIRLSEAHAKMRLSDVVEEADVEEAIRLLR 505 (509)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 999999999845858555999999999999