BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780567|ref|YP_003064980.1| hypothetical protein CLIBASIA_02270 [Candidatus Liberibacter asiaticus str. psy62] (246 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780567|ref|YP_003064980.1| hypothetical protein CLIBASIA_02270 [Candidatus Liberibacter asiaticus str. psy62] gi|254040244|gb|ACT57040.1| hypothetical protein CLIBASIA_02270 [Candidatus Liberibacter asiaticus str. psy62] Length = 246 Score = 501 bits (1289), Expect = e-140, Method: Compositional matrix adjust. Identities = 246/246 (100%), Positives = 246/246 (100%) Query: 1 MNLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWP 60 MNLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWP Sbjct: 1 MNLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWP 60 Query: 61 SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120 SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD Sbjct: 61 SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120 Query: 121 FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK Sbjct: 121 FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK Sbjct: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 Query: 241 ETQQCD 246 ETQQCD Sbjct: 241 ETQQCD 246 >gi|315121761|ref|YP_004062250.1| hypothetical protein CKC_00055 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495163|gb|ADR51762.1| hypothetical protein CKC_00055 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 247 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 183/247 (74%), Positives = 210/247 (85%), Gaps = 2/247 (0%) Query: 1 MNLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLG-ISRDDLLVHSAIEQAVRLIDSW 59 MN + + Y+ P K++ D+ K K EQLF SFPRC I+RDDLLVH +IEQAVR+IDSW Sbjct: 1 MNFITKGYNLVFPAKERVDRGK-KGEQLFLSFPRCFTKINRDDLLVHDSIEQAVRIIDSW 59 Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSW S +I VGPSGSGKSCLANIWS KS++ R S +A+ LDS LIDTRKP+LLED D Sbjct: 60 PSWISPTMIFVGPSGSGKSCLANIWSQKSKAQRLSGLARGLDSSLIDTRKPILLEDADRF 119 Query: 120 DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179 D NDT+LFHIINSIHQ+DSSLLMTARTFPVSW V LPDL SRLKAAT+VK+SLPDDDFLE Sbjct: 120 DLNDTELFHIINSIHQHDSSLLMTARTFPVSWSVRLPDLRSRLKAATIVKMSLPDDDFLE 179 Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 K IVKMFADRQIFID++LA YIVQRMERSLVFAEKLV++MD+LALSRG GITRSLA+EVL Sbjct: 180 KAIVKMFADRQIFIDERLAFYIVQRMERSLVFAEKLVNRMDDLALSRGTGITRSLASEVL 239 Query: 240 KETQQCD 246 +E Q+CD Sbjct: 240 EEIQKCD 246 >gi|222085485|ref|YP_002544015.1| DNA replication initiation ATPase protein [Agrobacterium radiobacter K84] gi|221722933|gb|ACM26089.1| DNA replication initiation ATPase protein [Agrobacterium radiobacter K84] Length = 237 Score = 241 bits (614), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 124/228 (54%), Positives = 158/228 (69%), Gaps = 1/228 (0%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPS 73 D + D + EQL +F RDDLLV + AVR++DSWP WPS VVIL GP Sbjct: 3 DVKNADLRRKPAEQLPLAFTHDAASGRDDLLVADPLSAAVRIVDSWPQWPSPVVILAGPV 62 Query: 74 GSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSI 133 GSGKS LA+IW ++S + A S D+ +I PV+ ED+D L F+DT+LFH+INS+ Sbjct: 63 GSGKSHLASIWCERSGAVPIHPKAGS-DAAVIAANGPVVFEDVDRLGFDDTELFHVINSV 121 Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193 + + LLMT+R +P+SW V LPDL SRLKAATVV+I PD++ L +VIVK+FADRQ++I Sbjct: 122 RENGTGLLMTSRLWPMSWPVTLPDLRSRLKAATVVEIGEPDEELLSQVIVKLFADRQLYI 181 Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 D KL YIV RMERSL A+ +VD++D LAL RG ITR LAAEVL E Sbjct: 182 DDKLVLYIVNRMERSLNAAQLIVDRLDRLALGRGTRITRILAAEVLNE 229 >gi|325292517|ref|YP_004278381.1| DNA replication initiation ATPase protein [Agrobacterium sp. H13-3] gi|325060370|gb|ADY64061.1| DNA replication initiation ATPase protein [Agrobacterium sp. H13-3] Length = 242 Score = 239 bits (609), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 121/227 (53%), Positives = 157/227 (69%), Gaps = 1/227 (0%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPS 73 D+ KND ++K EQL +F RDDLLV +++ AV L+D WP+WPS VV+L GP Sbjct: 3 DQIKNDNARSKAEQLPLAFSHQSASGRDDLLVSDSLKAAVSLVDEWPNWPSPVVVLAGPP 62 Query: 74 GSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSI 133 GSGKS LANIW + S + A + L +T PVL ED D F+DT+LFH+INS+ Sbjct: 63 GSGKSHLANIWKNISSAQDIHPQAGVGAARLAET-GPVLFEDADRRGFDDTELFHVINSV 121 Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193 Q+ ++LLMT+R +P +W V LPDL SRLKA TVV+ PD+ L +V+VK+FADRQ+++ Sbjct: 122 RQHGTTLLMTSRQWPAAWPVTLPDLRSRLKAVTVVETGEPDEGLLAQVLVKLFADRQLYM 181 Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 D KL YIV RMERSL A+ +VD++D LALSRG ITR LAAEVL Sbjct: 182 DDKLIGYIVNRMERSLDTAQTIVDRIDRLALSRGTRITRPLAAEVLN 228 >gi|218675452|ref|ZP_03525121.1| hypothetical protein RetlG_30801 [Rhizobium etli GR56] Length = 237 Score = 234 bits (596), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 123/231 (53%), Positives = 155/231 (67%), Gaps = 2/231 (0%) Query: 17 KNDQPKNKE-EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGS 75 KN PK K EQL F RDDLL+ + AV ++D+WP+WPS VV+L GP GS Sbjct: 5 KNADPKRKAGEQLPLVFSHDAASGRDDLLISERLAAAVSIVDAWPAWPSPVVVLAGPVGS 64 Query: 76 GKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ 135 GKS LA IW + S + S D+ + PVL ED D L F+D LFH+INS+ + Sbjct: 65 GKSHLARIWRELSGAVSIHPELGS-DAAVAAAAGPVLFEDADRLGFDDNALFHVINSVRE 123 Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195 + +SLLMT+R +P+SW V LPDL SRLKAATVV+I PD+ L +VIVK+FADRQ++ID Sbjct: 124 HGTSLLMTSRLWPISWPVSLPDLRSRLKAATVVEIGEPDEGLLSQVIVKLFADRQLYIDD 183 Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 KL YIV RMERSL A+ +V+++D LALSRG ITRSLAAEVL E + Sbjct: 184 KLVLYIVNRMERSLNAAQTIVERLDRLALSRGTKITRSLAAEVLNELGNSE 234 >gi|327192210|gb|EGE59179.1| hypothetical protein RHECNPAF_237005 [Rhizobium etli CNPAF512] Length = 237 Score = 233 bits (594), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 123/231 (53%), Positives = 155/231 (67%), Gaps = 2/231 (0%) Query: 17 KNDQPKNKE-EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGS 75 KN PK K EQL F RDDLL+ + AV ++D+WP+WPS VV+L GP GS Sbjct: 5 KNADPKRKAGEQLPLVFSHDAASGRDDLLISERLAAAVSIVDAWPAWPSPVVVLAGPVGS 64 Query: 76 GKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ 135 GKS LA IW + S + S D+ + PVL ED D L F+D LFH+INS+ + Sbjct: 65 GKSHLARIWRELSGAVSIHPELGS-DAAVAAAAGPVLFEDADRLGFDDNALFHVINSVRE 123 Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195 + +SLLMT+R +P+SW V LPDL SRLKAATVV+I PD+ L +VIVK+FADRQ++ID Sbjct: 124 HGTSLLMTSRLWPISWPVSLPDLRSRLKAATVVEIGEPDEALLSQVIVKLFADRQLYIDD 183 Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 KL YIV RMERSL A+ +V+++D LALSRG ITRSLAAEVL E + Sbjct: 184 KLVLYIVNRMERSLNAAQTIVERLDRLALSRGTKITRSLAAEVLNELGNSE 234 >gi|190891172|ref|YP_001977714.1| hypothetical protein RHECIAT_CH0001558 [Rhizobium etli CIAT 652] gi|190696451|gb|ACE90536.1| hypothetical conserved protein [Rhizobium etli CIAT 652] Length = 237 Score = 232 bits (592), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 123/231 (53%), Positives = 155/231 (67%), Gaps = 2/231 (0%) Query: 17 KNDQPKNKE-EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGS 75 KN PK K EQL F RDDLL+ + AV ++D+WP+WPS VV+L GP GS Sbjct: 5 KNADPKRKAGEQLPLVFSHDAASGRDDLLISERLAAAVSIVDAWPAWPSPVVVLAGPVGS 64 Query: 76 GKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ 135 GKS LA IW + S + S D+ + PVL ED D L F+D LFH+INS+ + Sbjct: 65 GKSHLARIWRELSGAVDIRPDLGS-DAAVAAAAGPVLFEDADRLGFDDNALFHVINSVRE 123 Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195 + +SLLMT+R +P+SW V LPDL SRLKAATVV+I PD+ L +VIVK+FADRQ++ID Sbjct: 124 HGTSLLMTSRLWPISWPVSLPDLRSRLKAATVVEIGEPDEALLSQVIVKLFADRQLYIDD 183 Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 KL YIV RMERSL A+ +V+++D LALSRG ITRSLAAEVL E + Sbjct: 184 KLVLYIVNRMERSLNAAQTIVERLDRLALSRGTKITRSLAAEVLNELGNSE 234 >gi|209548700|ref|YP_002280617.1| hypothetical protein Rleg2_1097 [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534456|gb|ACI54391.1| conserved hypothetical protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 237 Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 123/231 (53%), Positives = 155/231 (67%), Gaps = 2/231 (0%) Query: 17 KNDQPKNKE-EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGS 75 KN PK K EQL F SRDDLL+ + AV ++D+WP+WPS VV+L GP GS Sbjct: 5 KNADPKRKAGEQLPLVFSHDAASSRDDLLISERLAAAVSIVDAWPAWPSPVVVLAGPVGS 64 Query: 76 GKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ 135 GKS LA IW + S + S D+ + PVL ED D L F+D LFH+INS+ + Sbjct: 65 GKSHLARIWRELSGAVDIHPELGS-DAAVAAAAGPVLFEDADRLGFDDNALFHVINSVRE 123 Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195 +SLLMT+R +P+SW V LPDL SRLKAATVV+I PD+ L +VIVK+FADRQ++ID Sbjct: 124 NGTSLLMTSRLWPISWPVSLPDLRSRLKAATVVEIGEPDEVLLSQVIVKLFADRQLYIDD 183 Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 KL YIV RMERSL A+ +V+++D LALSRG ITRS+AAEVL E + Sbjct: 184 KLVLYIVVRMERSLNAAQTIVERLDRLALSRGTKITRSMAAEVLNELGNSE 234 >gi|86357128|ref|YP_469020.1| hypothetical protein RHE_CH01490 [Rhizobium etli CFN 42] gi|86281230|gb|ABC90293.1| putative DNA replication initiation ATPase protein [Rhizobium etli CFN 42] Length = 237 Score = 229 bits (584), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 121/231 (52%), Positives = 155/231 (67%), Gaps = 2/231 (0%) Query: 17 KNDQPKNKE-EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGS 75 KN PK K EQL +F RDDLL+ + AV ++D+WP+WPS VV+L GP GS Sbjct: 5 KNADPKRKAGEQLPLAFSHDAASGRDDLLISERLAAAVSIVDAWPAWPSPVVVLAGPVGS 64 Query: 76 GKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ 135 GKS LA IW + S + S D+ + PVL ED D L F+D LFH+INS+ + Sbjct: 65 GKSHLARIWQELSGAVSIHPGLGS-DAAVAAAAGPVLFEDADRLGFDDNALFHVINSVRE 123 Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195 +SLL+T+R +P+SW V LPDL SRLKAATVV+I PD+ L +VIVK+FADRQ++ID Sbjct: 124 NATSLLITSRLWPISWPVLLPDLRSRLKAATVVEIGEPDEVLLSQVIVKLFADRQLYIDD 183 Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 KL YIV RMERSL A+ +V+++D LALSRG ITR+LAAEVL E + Sbjct: 184 KLVLYIVNRMERSLNAAQTIVERLDRLALSRGTKITRALAAEVLNELGNSE 234 >gi|241203978|ref|YP_002975074.1| hypothetical protein Rleg_1243 [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857868|gb|ACS55535.1| conserved hypothetical protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 237 Score = 229 bits (584), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 123/231 (53%), Positives = 154/231 (66%), Gaps = 2/231 (0%) Query: 17 KNDQPKNKE-EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGS 75 KN PK K EQL F RDDLL+ + AV ++D+WP+WPS VV+L GP GS Sbjct: 5 KNADPKRKAGEQLPLVFSHDAASGRDDLLISERLAAAVSIVDAWPAWPSPVVVLAGPVGS 64 Query: 76 GKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ 135 GKS LA IW + S + S D+ + PVL ED D L F+D LFH+INS+ + Sbjct: 65 GKSHLARIWRELSGAVDIHPELGS-DAAIAAAAGPVLFEDADRLGFDDNALFHVINSVRE 123 Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195 +SLLMT+R +P+SW V LPDL SRLKAATVV+I PD+ L +VIVK+FADRQ++ID Sbjct: 124 NGTSLLMTSRLWPMSWPVLLPDLRSRLKAATVVEIGEPDEALLSQVIVKLFADRQLYIDD 183 Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 KL YIV RMERSL A+ +V+++D LALSRG ITRSLAAEVL E + Sbjct: 184 KLVLYIVVRMERSLNAAQTIVERLDRLALSRGTKITRSLAAEVLNELGNSE 234 >gi|116251364|ref|YP_767202.1| hypothetical protein RL1598 [Rhizobium leguminosarum bv. viciae 3841] gi|115256012|emb|CAK07093.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae 3841] Length = 237 Score = 229 bits (583), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 123/231 (53%), Positives = 154/231 (66%), Gaps = 2/231 (0%) Query: 17 KNDQPK-NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGS 75 KN PK N EQL F RDDLL+ + AV ++D+WP+WPS VV+L GP GS Sbjct: 5 KNADPKRNAGEQLPLVFSHDAASGRDDLLISERLAAAVSIVDAWPAWPSPVVVLAGPVGS 64 Query: 76 GKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ 135 GKS LA IW + S + S D+ + PVL ED D L F+D LFH+INS+ + Sbjct: 65 GKSHLARIWRELSGAVDIHPELGS-DAAVAAAAGPVLFEDADRLGFDDNALFHVINSVRE 123 Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195 +SLLMT+R +P+SW V LPDL SRLKAATVV+I PD+ L +VIVK+FADRQ++ID Sbjct: 124 NGTSLLMTSRLWPMSWPVLLPDLRSRLKAATVVEIGEPDEVLLSQVIVKLFADRQLYIDD 183 Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 KL YIV RMERSL A+ +V+++D LALSRG ITRSLAAEVL E + Sbjct: 184 KLVLYIVVRMERSLNAAQTIVERLDRLALSRGTKITRSLAAEVLNELGNSE 234 >gi|15964939|ref|NP_385292.1| hypothetical protein SMc00617 [Sinorhizobium meliloti 1021] gi|307301009|ref|ZP_07580778.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C] gi|307317743|ref|ZP_07597181.1| conserved hypothetical protein [Sinorhizobium meliloti AK83] gi|15074118|emb|CAC45765.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021] gi|306896505|gb|EFN27253.1| conserved hypothetical protein [Sinorhizobium meliloti AK83] gi|306903964|gb|EFN34550.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C] Length = 229 Score = 228 bits (582), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 113/220 (51%), Positives = 153/220 (69%), Gaps = 1/220 (0%) Query: 22 KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 ++ EQL F RDDLLV + A+ ++D WP+WPS VVI+ GP GSGKS LA Sbjct: 3 RHLSEQLPLVFGHAPATGRDDLLVSDRLSAAISIVDHWPAWPSPVVIICGPVGSGKSHLA 62 Query: 82 NIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLL 141 IW +K+R+ A S ++ I KPVL ED D F+D LFH+INS+ Q ++LL Sbjct: 63 GIWREKARAEPIHPFAGS-NAADIAAEKPVLFEDADRQGFDDAALFHVINSVRQNGTALL 121 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 MT+R +P+SW V LPDL SRLKAATVV+I PDD+ L +V+ K+FADRQ+ +D++L Y+ Sbjct: 122 MTSRLWPMSWPVGLPDLKSRLKAATVVEIGEPDDELLVQVLTKLFADRQLLVDERLVGYV 181 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 V RMERSL A+ +V+++D+LAL+RG TR+LAAEVL+E Sbjct: 182 VARMERSLEAAQTIVERIDHLALARGTRPTRALAAEVLEE 221 >gi|227821508|ref|YP_002825478.1| hypothetical protein NGR_c09350 [Sinorhizobium fredii NGR234] gi|227340507|gb|ACP24725.1| chromosomal replication initiator, DnaA [Sinorhizobium fredii NGR234] Length = 229 Score = 228 bits (580), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 112/220 (50%), Positives = 154/220 (70%), Gaps = 1/220 (0%) Query: 22 KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 + EQL F R+DLLV + A+ ++D WP WPS VVI+ GP GSGKS LA Sbjct: 3 RRPNEQLPLVFGHDPATGREDLLVSDRLSAAIAIVDHWPEWPSPVVIIAGPVGSGKSHLA 62 Query: 82 NIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLL 141 +IW ++S + +A S ++ I KPVL ED+D F+DT LFH+INS+ Q ++LL Sbjct: 63 SIWRERSDAVAIHPVAGS-NAADIAASKPVLFEDVDRQGFDDTALFHVINSVRQNGTALL 121 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 MT+R +P+SW V LPDL SRLKAATVV+I PDD+ L +V+ K+FADRQ+ +D++ AYI Sbjct: 122 MTSRLWPMSWPVALPDLKSRLKAATVVEIGEPDDELLTQVLFKLFADRQLLVDERFVAYI 181 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 V RMERSL A+ +V+++D+ AL+RG +TR+LAAEVL+E Sbjct: 182 VNRMERSLEAAQTIVERLDHSALARGTRLTRALAAEVLEE 221 >gi|15888480|ref|NP_354161.1| hypothetical protein Atu1143 [Agrobacterium tumefaciens str. C58] gi|15156178|gb|AAK86946.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 242 Score = 226 bits (576), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 115/227 (50%), Positives = 155/227 (68%), Gaps = 1/227 (0%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPS 73 D+ K D ++K EQL +F R+DLLV +++ AV L+D WP+WPS VV+L GP Sbjct: 3 DQIKTDNARSKAEQLPLAFSHQSASGREDLLVSASLAAAVSLVDEWPNWPSPVVVLAGPP 62 Query: 74 GSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSI 133 GSGKS LANIW + S + A + + +T PVL ED D F+DT+LFH+INS+ Sbjct: 63 GSGKSHLANIWKNISDARDIHPEAGADAARAAET-GPVLFEDADRRGFDDTELFHVINSV 121 Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193 Q+ ++LLMT+R +P +W V LPDL SRLKA TVV+ PD+ L +V+VK+FADRQ+++ Sbjct: 122 RQHGTTLLMTSRQWPAAWPVTLPDLRSRLKAVTVVETGEPDEGLLAQVLVKLFADRQLYM 181 Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 D KL YIV RMERSL A+ +V+++D+LALSR ITR L AEVL Sbjct: 182 DDKLIGYIVNRMERSLDTAQTIVEQIDHLALSRATRITRPLVAEVLN 228 >gi|150396018|ref|YP_001326485.1| hypothetical protein Smed_0794 [Sinorhizobium medicae WSM419] gi|150027533|gb|ABR59650.1| conserved hypothetical protein [Sinorhizobium medicae WSM419] Length = 229 Score = 225 bits (574), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 112/215 (52%), Positives = 151/215 (70%), Gaps = 1/215 (0%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 EQL +F RDDLLV + A+ ++D WP+WPS VVI+ GP GSGKS LA IW Sbjct: 7 EQLPLAFGHAPATGRDDLLVSDRLSAAISIVDHWPAWPSPVVIICGPVGSGKSHLAGIWR 66 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTAR 145 +K+ + +A S D+ I KPVL ED D F++ LFH+INS+ Q ++LLMT+R Sbjct: 67 EKAGAEPIHPVAGS-DAADIAAEKPVLFEDADRQGFDEAALFHVINSVRQNGTALLMTSR 125 Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 +P+SW V LPDL SRLKAATVV+I PDD+ L +V+ K+FADRQ+F+D++L YIV RM Sbjct: 126 LWPMSWPVELPDLKSRLKAATVVEIGEPDDELLMQVLTKLFADRQLFVDERLIGYIVARM 185 Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 ERSL A+ +V+++D+LAL+R TR+LAAEVL+ Sbjct: 186 ERSLEAAQTIVERIDHLALARATRPTRALAAEVLE 220 >gi|218462578|ref|ZP_03502669.1| hypothetical protein RetlK5_25345 [Rhizobium etli Kim 5] Length = 237 Score = 223 bits (567), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 117/225 (52%), Positives = 149/225 (66%), Gaps = 1/225 (0%) Query: 22 KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 + EQL F RDDLL+ + AV ++D+WP WPS VV+L GP GSGKS LA Sbjct: 11 RKAAEQLSLLFSHDAASGRDDLLISERLAAAVSIVDAWPEWPSPVVVLAGPVGSGKSHLA 70 Query: 82 NIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLL 141 IWS+ S + S D+ + PVL ED D F+D LFH+INS+ + +SLL Sbjct: 71 RIWSELSGAVSIHPELGS-DAAVAAAAGPVLFEDADRQGFDDNALFHVINSVRENGTSLL 129 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 +T+R +P+SW V LPDL SRLKAATVV+I PD+ L +VIVK+FADRQ++ID KL YI Sbjct: 130 ITSRLWPMSWPVQLPDLRSRLKAATVVEIGEPDEALLSQVIVKLFADRQLYIDDKLVLYI 189 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 V RMERSL A+ +V+++D LALSRG ITRSLAAEVL E + Sbjct: 190 VNRMERSLNAAQTIVERLDRLALSRGTKITRSLAAEVLNELGNSE 234 >gi|222148179|ref|YP_002549136.1| hypothetical protein Avi_1578 [Agrobacterium vitis S4] gi|221735167|gb|ACM36130.1| conserved hypothetical protein [Agrobacterium vitis S4] Length = 240 Score = 216 bits (551), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 110/214 (51%), Positives = 152/214 (71%), Gaps = 1/214 (0%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 EQL + RDDLLV + AV ++D+WP+WPS VVIL GP GSGKS LA IW Sbjct: 20 EQLPLALGHRPASGRDDLLVSGRLAAAVSVVDAWPNWPSPVVILSGPQGSGKSHLAEIWR 79 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTAR 145 +S + ++ + D+ + +R VL ED D DF++ +LFH+INS+ Q+ +SLL+T+R Sbjct: 80 TQSGAVDILPLSGA-DASMTASRGAVLFEDADRADFDEVELFHVINSVKQHGTSLLITSR 138 Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 T+P+SW V L DL SRLKAAT+V+I PD+ L +VIVK+FADRQ+ ID+++ YIVQRM Sbjct: 139 TWPLSWPVKLADLRSRLKAATLVEIGEPDEALLSQVIVKLFADRQLAIDERVVDYIVQRM 198 Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 ERSL A+ +V+++D LAL+R I+R+LAAEVL Sbjct: 199 ERSLAAAQAVVEQLDRLALARRAKISRALAAEVL 232 >gi|163759173|ref|ZP_02166259.1| hypothetical protein HPDFL43_05395 [Hoeflea phototrophica DFL-43] gi|162283577|gb|EDQ33862.1| hypothetical protein HPDFL43_05395 [Hoeflea phototrophica DFL-43] Length = 235 Score = 208 bits (529), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 100/206 (48%), Positives = 143/206 (69%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 +QL +F RDDL+V ++ AV +ID WP WPS VVIL GP+GSGKS LA+IW+ Sbjct: 9 QQLPLAFEHDPASGRDDLIVSESVGGAVTMIDRWPEWPSPVVILAGPTGSGKSHLASIWA 68 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTAR 145 D++ + R + A++ ++I PVL+ED+D +++T LFH+IN++ + ++ LMTAR Sbjct: 69 DRTGAHRVNLGARANEAIAAAASGPVLIEDVDRTAYDETALFHLINAVRSHGATALMTAR 128 Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 FP W V LPDL SRLKAATVV+I PD++ L +V+VK+FADRQ+ +D ++ ++V RM Sbjct: 129 QFPAGWNVALPDLASRLKAATVVEIGEPDEELLAQVMVKLFADRQLNVDDRIVRWLVARM 188 Query: 206 ERSLVFAEKLVDKMDNLALSRGMGIT 231 ERSL +VD +D LAL+RG IT Sbjct: 189 ERSLAAVRHIVDGLDQLALARGSKIT 214 >gi|260463359|ref|ZP_05811560.1| conserved hypothetical protein [Mesorhizobium opportunistum WSM2075] gi|259030949|gb|EEW32224.1| conserved hypothetical protein [Mesorhizobium opportunistum WSM2075] Length = 246 Score = 202 bits (514), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 104/231 (45%), Positives = 145/231 (62%), Gaps = 8/231 (3%) Query: 16 QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGS 75 Q+ D P+ QL G SRD+L+V QA L+D WP WPS VV+L GP+GS Sbjct: 16 QRTDPPR----QLPLDLGHGTGYSRDELVVSGTNSQAAALVDRWPDWPSPVVVLAGPAGS 71 Query: 76 GKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ 135 GK+ LA IW + + + + DSI +P L++D+D ++ LFH+IN++ Sbjct: 72 GKTHLAAIWRAHANAVAV-DAGRIGDSIANLGARPALIDDVDAGAVDEQGLFHLINAVRG 130 Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195 S+LL+TAR FP +WGV LPDL SRLKAA V+I PDD L VI K+FADRQ+ ++ Sbjct: 131 AGSTLLLTARRFPAAWGVSLPDLASRLKAAATVEIHEPDDLLLAGVITKLFADRQVEVEP 190 Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE---VLKETQ 243 + Y+V+R+ERSL A ++V+++D +AL R M ITR+LAAE V+ E Q Sbjct: 191 HVVQYLVRRIERSLATAMRVVERLDRIALERKMPITRALAAETVSVMDEGQ 241 >gi|13476596|ref|NP_108166.1| hypothetical protein mlr7968 [Mesorhizobium loti MAFF303099] gi|14027358|dbj|BAB53627.1| mlr7968 [Mesorhizobium loti MAFF303099] Length = 234 Score = 202 bits (514), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 103/225 (45%), Positives = 145/225 (64%), Gaps = 7/225 (3%) Query: 16 QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGS 75 Q+ D P+ QL G SRD+L+V QA L+D WP WPS VV+L GP+GS Sbjct: 4 QRTDPPR----QLPLDLGHGTGYSRDELVVSGTNNQAAALVDRWPDWPSPVVVLAGPAGS 59 Query: 76 GKSCLANIWSDKSRSTRFSNIAKSL-DSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIH 134 GK+ LA IW ++R+ + A+ + DSI +P L++D+D ++ LFH+IN++ Sbjct: 60 GKTHLAAIW--RARANAVAVDARRIGDSIAGLGARPALIDDVDAGAVDEQGLFHLINAVR 117 Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194 S+LL+TAR FP +WGV LPDL SRLKAA V+I PDD L VI K+FADRQ+ ++ Sbjct: 118 GAGSTLLLTARRFPSAWGVSLPDLASRLKAAATVEIHEPDDLLLAGVITKLFADRQVEVE 177 Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + Y+V+R+ERSL A ++V+++D AL R M ITR+LAAE + Sbjct: 178 PHVVQYLVRRIERSLATAMRVVERLDRTALERKMPITRALAAETV 222 >gi|319784359|ref|YP_004143835.1| Chromosomal replication initiator DnaA [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170247|gb|ADV13785.1| Chromosomal replication initiator DnaA [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 234 Score = 198 bits (504), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 101/220 (45%), Positives = 138/220 (62%), Gaps = 1/220 (0%) Query: 20 QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSC 79 QP + QL G SRD+L+V QAV L+D WP WPS VV+L GP+GSGK+ Sbjct: 4 QPTDPPRQLPLDLGHGTGYSRDELVVSGTNNQAVALVDRWPDWPSPVVVLAGPAGSGKTH 63 Query: 80 LANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSS 139 LA+IW ++ + DSI +P L++D+D ++ LFH+IN++ S Sbjct: 64 LASIWRARANAAAVDARRIG-DSIANLGARPALIDDVDTGTVDEQGLFHLINAVRGAGSQ 122 Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199 LL+TAR FP +WGV LPDL SRLKAA V+I PDD L VI K+FADRQI ++ + Sbjct: 123 LLLTARRFPSAWGVGLPDLASRLKAAATVEIHEPDDLLLAGVITKLFADRQIEVEPHVVQ 182 Query: 200 YIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 Y+V+R+ERSL A ++V+++D AL R ITR+LAAE + Sbjct: 183 YLVRRIERSLATAMRVVERLDRTALERKTPITRALAAETV 222 >gi|110634313|ref|YP_674521.1| hypothetical protein Meso_1963 [Mesorhizobium sp. BNC1] gi|110285297|gb|ABG63356.1| regulatory inactivation of DnaA Hda protein [Chelativorans sp. BNC1] Length = 233 Score = 195 bits (495), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 95/214 (44%), Positives = 142/214 (66%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL G SR+DL+V A E AV L++SWP WP+ +V+L GP+GSGK+ LA+IW D Sbjct: 9 QLPLDLAHTEGRSREDLVVTPANELAVALVESWPDWPAPIVVLAGPAGSGKTHLADIWCD 68 Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTART 146 +S + S A +++ P+L++D D ++T LFH+IN + + LL+TAR Sbjct: 69 QSGAFPVSATAIETEAMAAAEHGPILIDDADSPLLDETGLFHLINMVRGSHTHLLLTARH 128 Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206 P +WGV LPDL SRLKAA V+I PDD L V +K+FADRQ+ ++ + ++++RME Sbjct: 129 LPSAWGVKLPDLLSRLKAAAAVEIREPDDMLLTGVFIKLFADRQVAVEPHVVQFMLRRME 188 Query: 207 RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 RSL A ++V+++D +AL R + I+R+LAAE+L+ Sbjct: 189 RSLSAARRIVERLDRVALERKIRISRTLAAEILE 222 >gi|239831548|ref|ZP_04679877.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301] gi|239823815|gb|EEQ95383.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301] Length = 246 Score = 191 bits (485), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 101/230 (43%), Positives = 147/230 (63%), Gaps = 5/230 (2%) Query: 22 KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 + Q+ + G R+DL+V + AV LID WP+W S V IL GP+GSGK+ LA Sbjct: 16 REAPRQIPLNLEHQPGYHREDLIVTGSNRAAVDLIDRWPNWLSPVTILAGPTGSGKTHLA 75 Query: 82 NIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDS--- 138 IW + + + + +++ PVL++DI F++T LFH+INS+ Q + Sbjct: 76 EIWRAGTGALLVDPSSITEEAVNGAAEYPVLIDDIGATPFDETGLFHLINSVRQNAAQGI 135 Query: 139 --SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196 SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD L VI K+FADRQ+ ++ Sbjct: 136 GPSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDLLLSGVIHKLFADRQVSVEPH 195 Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + AY+V R+ERSL+ A ++VDK+D AL + ITR+LAA+VL +++Q + Sbjct: 196 VVAYLVSRIERSLLSAIRIVDKLDRAALEQKSRITRTLAAQVLADSEQPE 245 >gi|153009901|ref|YP_001371116.1| hypothetical protein Oant_2574 [Ochrobactrum anthropi ATCC 49188] gi|151561789|gb|ABS15287.1| conserved hypothetical protein [Ochrobactrum anthropi ATCC 49188] Length = 232 Score = 190 bits (482), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 101/230 (43%), Positives = 144/230 (62%), Gaps = 5/230 (2%) Query: 22 KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 + Q+ + G R+D++V + AV LID WP+W S V IL GP+GSGK+ LA Sbjct: 2 REAPRQIPLNLEHQPGYHREDMIVTGSNRAAVDLIDRWPNWLSPVTILAGPTGSGKTHLA 61 Query: 82 NIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ-----Y 136 IW + + + +++ PVL++DI F++T LFH+INS+ Q Sbjct: 62 EIWRAGTGALLVDPTNITEEAVNGAAEYPVLIDDIGAAPFDETGLFHLINSVRQNAAQGL 121 Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196 SLLMT+R +P +W V LPDL SRLKAATVV+IS PDD L VI K+FADRQ+ ++ Sbjct: 122 GPSLLMTSRLWPANWNVKLPDLASRLKAATVVEISEPDDLLLSGVIHKLFADRQVSVEPH 181 Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + AY+V R+ERSL+ A ++VDK+D AL + ITR+LAA+VL ++Q + Sbjct: 182 VVAYLVSRIERSLLSAIQIVDKLDRAALEQKSRITRTLAAQVLAGSEQPE 231 >gi|163842986|ref|YP_001627390.1| hypothetical protein BSUIS_A0745 [Brucella suis ATCC 23445] gi|163673709|gb|ABY37820.1| Hypothetical protein BSUIS_A0745 [Brucella suis ATCC 23445] Length = 231 Score = 189 bits (479), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 102/235 (43%), Positives = 153/235 (65%), Gaps = 13/235 (5%) Query: 18 NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGK 77 +D P+ Q+ + G +R+DL+V ++ AV LID WP+W S V IL GP+G+GK Sbjct: 2 HDAPR----QIPLNLEHQPGYNREDLIVTASNRAAVDLIDRWPNWLSPVTILAGPTGAGK 57 Query: 78 SCLANIWSDKSRSTRF--SNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ 135 + LA IW + + SNI + +++ +PVL+++I F++T LFH+INS+ Q Sbjct: 58 THLAEIWRSGTDALLLDPSNITE--EAVNSAAERPVLIDNIGAEAFDETGLFHLINSVRQ 115 Query: 136 YDS-----SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 + + SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD L VI K+FADRQ Sbjct: 116 HAAQGPGPSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDMLLSGVIHKLFADRQ 175 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 + ++ + +Y+V RMERSL+ A ++VD++D AL + ITR+LAA++L + Q Sbjct: 176 VSVEPHVVSYLVSRMERSLLSAIQIVDRLDRAALEQKSRITRALAAQILADMGQA 230 >gi|23501601|ref|NP_697728.1| hypothetical protein BR0714 [Brucella suis 1330] gi|23347516|gb|AAN29643.1| conserved hypothetical protein [Brucella suis 1330] Length = 231 Score = 189 bits (479), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 102/235 (43%), Positives = 153/235 (65%), Gaps = 13/235 (5%) Query: 18 NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGK 77 +D P+ Q+ + G +R+DL+V ++ AV LID WP+W S V IL GP+G+GK Sbjct: 2 HDAPR----QIPLNLEHQPGYNREDLIVTASNRAAVDLIDRWPNWLSPVTILAGPTGAGK 57 Query: 78 SCLANIWSDKSRSTRF--SNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ 135 + LA IW + + SNI + +++ +PVL+++I F++T LFH+INS+ Q Sbjct: 58 THLAEIWRSGTDALLVDPSNITE--EAVNSAAERPVLIDNIGAQAFDETGLFHLINSVRQ 115 Query: 136 YDS-----SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 + + SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD L VI K+FADRQ Sbjct: 116 HAAQGPGPSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDMLLSGVIHKLFADRQ 175 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 + ++ + +Y+V RMERSL+ A ++VD++D AL + ITR+LAA++L + Q Sbjct: 176 VSVEPHVVSYLVSRMERSLLSAIQIVDRLDRAALEQKSRITRALAAQILADMGQA 230 >gi|306842022|ref|ZP_07474695.1| ATP/GTP-binding protein [Brucella sp. BO2] gi|306287863|gb|EFM59283.1| ATP/GTP-binding protein [Brucella sp. BO2] Length = 235 Score = 189 bits (479), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 102/235 (43%), Positives = 153/235 (65%), Gaps = 13/235 (5%) Query: 18 NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGK 77 +D P+ Q+ + G +R+DL+V ++ AV LID WP+W S V IL GP+G+GK Sbjct: 6 HDAPR----QIPLNLEHQPGYNREDLIVTASNRAAVDLIDRWPNWLSPVTILAGPTGAGK 61 Query: 78 SCLANIWSDKSRSTRF--SNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ 135 + LA IW + + SNI + +++ +PVL+++I F++T LFH+INS+ Q Sbjct: 62 THLAEIWRSGTDALLVDPSNITE--EAVNSAAERPVLIDNIGAEAFDETGLFHLINSVRQ 119 Query: 136 YDS-----SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 + + SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD L VI K+FADRQ Sbjct: 120 HAAQGPGPSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDMLLSGVIHKLFADRQ 179 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 + ++ + +Y+V RMERSL+ A ++VD++D AL + ITR+LAA++L + Q Sbjct: 180 VSVEPHVVSYLVSRMERSLLSAIQIVDRLDRAALEQKSRITRALAAQILADMGQA 234 >gi|260563758|ref|ZP_05834244.1| ATP/GTP-binding protein [Brucella melitensis bv. 1 str. 16M] gi|260566710|ref|ZP_05837180.1| ATP/GTP-binding protein [Brucella suis bv. 4 str. 40] gi|261213721|ref|ZP_05928002.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya] gi|261218919|ref|ZP_05933200.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261221913|ref|ZP_05936194.1| conserved hypothetical protein [Brucella ceti B1/94] gi|261314524|ref|ZP_05953721.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261317373|ref|ZP_05956570.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261321582|ref|ZP_05960779.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|261754699|ref|ZP_05998408.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|265983834|ref|ZP_06096569.1| conserved hypothetical protein [Brucella sp. 83/13] gi|265988410|ref|ZP_06100967.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] gi|265990825|ref|ZP_06103382.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] gi|265997876|ref|ZP_06110433.1| conserved hypothetical protein [Brucella ceti M490/95/1] gi|265999530|ref|ZP_05466791.2| ATP/GTP-binding protein [Brucella melitensis bv. 2 str. 63/9] gi|260153774|gb|EEW88866.1| ATP/GTP-binding protein [Brucella melitensis bv. 1 str. 16M] gi|260156228|gb|EEW91308.1| ATP/GTP-binding protein [Brucella suis bv. 4 str. 40] gi|260915328|gb|EEX82189.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya] gi|260920497|gb|EEX87150.1| conserved hypothetical protein [Brucella ceti B1/94] gi|260924008|gb|EEX90576.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261294272|gb|EEX97768.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|261296596|gb|EEY00093.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261303550|gb|EEY07047.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261744452|gb|EEY32378.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|262552344|gb|EEZ08334.1| conserved hypothetical protein [Brucella ceti M490/95/1] gi|263001609|gb|EEZ14184.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] gi|263094519|gb|EEZ18328.1| ATP/GTP-binding protein [Brucella melitensis bv. 2 str. 63/9] gi|264660607|gb|EEZ30868.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] gi|264662426|gb|EEZ32687.1| conserved hypothetical protein [Brucella sp. 83/13] gi|326538455|gb|ADZ86670.1| conserved hypothetical protein [Brucella melitensis M5-90] Length = 235 Score = 189 bits (479), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 102/235 (43%), Positives = 153/235 (65%), Gaps = 13/235 (5%) Query: 18 NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGK 77 +D P+ Q+ + G +R+DL+V ++ AV LID WP+W S V IL GP+G+GK Sbjct: 6 HDAPR----QIPLNLEHQPGYNREDLIVTASNRAAVDLIDRWPNWLSPVTILAGPTGAGK 61 Query: 78 SCLANIWSDKSRSTRF--SNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ 135 + LA IW + + SNI + +++ +PVL+++I F++T LFH+INS+ Q Sbjct: 62 THLAEIWRSGTDALLVDPSNITE--EAVNSAAERPVLIDNIGAEAFDETGLFHLINSVRQ 119 Query: 136 YDS-----SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 + + SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD L VI K+FADRQ Sbjct: 120 HAAQGPGPSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDMLLSGVIHKLFADRQ 179 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 + ++ + +Y+V RMERSL+ A ++VD++D AL + ITR+LAA++L + Q Sbjct: 180 VSVEPHVVSYLVSRMERSLLSAIQIVDRLDRAALEQKSRITRALAAQILADMGQA 234 >gi|225627210|ref|ZP_03785248.1| ATP/GTP-binding protein [Brucella ceti str. Cudo] gi|261757927|ref|ZP_06001636.1| ATP/GTP-binding protein [Brucella sp. F5/99] gi|225618045|gb|EEH15089.1| ATP/GTP-binding protein [Brucella ceti str. Cudo] gi|261737911|gb|EEY25907.1| ATP/GTP-binding protein [Brucella sp. F5/99] Length = 236 Score = 189 bits (479), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 102/235 (43%), Positives = 153/235 (65%), Gaps = 13/235 (5%) Query: 18 NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGK 77 +D P+ Q+ + G +R+DL+V ++ AV LID WP+W S V IL GP+G+GK Sbjct: 7 HDAPR----QIPLNLEHQPGYNREDLIVTASNRAAVDLIDRWPNWLSPVTILAGPTGAGK 62 Query: 78 SCLANIWSDKSRSTRF--SNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ 135 + LA IW + + SNI + +++ +PVL+++I F++T LFH+INS+ Q Sbjct: 63 THLAEIWRSGTDALLVDPSNITE--EAVNSAAERPVLIDNIGAEAFDETGLFHLINSVRQ 120 Query: 136 YDS-----SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 + + SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD L VI K+FADRQ Sbjct: 121 HAAQGPGPSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDMLLSGVIHKLFADRQ 180 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 + ++ + +Y+V RMERSL+ A ++VD++D AL + ITR+LAA++L + Q Sbjct: 181 VSVEPHVVSYLVSRMERSLLSAIQIVDRLDRAALEQKSRITRALAAQILADMGQA 235 >gi|17987521|ref|NP_540155.1| hypothetical protein BMEI1238 [Brucella melitensis bv. 1 str. 16M] gi|148559701|ref|YP_001258694.1| hypothetical protein BOV_0704 [Brucella ovis ATCC 25840] gi|161618684|ref|YP_001592571.1| hypothetical protein BCAN_A0727 [Brucella canis ATCC 23365] gi|225852234|ref|YP_002732467.1| hypothetical protein BMEA_A0751 [Brucella melitensis ATCC 23457] gi|254688983|ref|ZP_05152237.1| ATP/GTP-binding protein [Brucella abortus bv. 6 str. 870] gi|254693465|ref|ZP_05155293.1| ATP/GTP-binding protein [Brucella abortus bv. 3 str. Tulya] gi|254697117|ref|ZP_05158945.1| ATP/GTP-binding protein [Brucella abortus bv. 2 str. 86/8/59] gi|254704042|ref|ZP_05165870.1| ATP/GTP-binding protein [Brucella suis bv. 3 str. 686] gi|254707056|ref|ZP_05168884.1| ATP/GTP-binding protein [Brucella pinnipedialis M163/99/10] gi|254709834|ref|ZP_05171645.1| ATP/GTP-binding protein [Brucella pinnipedialis B2/94] gi|254713836|ref|ZP_05175647.1| ATP/GTP-binding protein [Brucella ceti M644/93/1] gi|254717106|ref|ZP_05178917.1| ATP/GTP-binding protein [Brucella ceti M13/05/1] gi|254718849|ref|ZP_05180660.1| ATP/GTP-binding protein [Brucella sp. 83/13] gi|254730013|ref|ZP_05188591.1| ATP/GTP-binding protein [Brucella abortus bv. 4 str. 292] gi|256031324|ref|ZP_05444938.1| ATP/GTP-binding protein [Brucella pinnipedialis M292/94/1] gi|256044405|ref|ZP_05447309.1| ATP/GTP-binding protein [Brucella melitensis bv. 1 str. Rev.1] gi|256159444|ref|ZP_05457216.1| ATP/GTP-binding protein [Brucella ceti M490/95/1] gi|256254733|ref|ZP_05460269.1| ATP/GTP-binding protein [Brucella ceti B1/94] gi|256257231|ref|ZP_05462767.1| ATP/GTP-binding protein [Brucella abortus bv. 9 str. C68] gi|256369148|ref|YP_003106656.1| hypothetical protein BMI_I709 [Brucella microti CCM 4915] gi|260168462|ref|ZP_05755273.1| ATP/GTP-binding protein [Brucella sp. F5/99] gi|260757694|ref|ZP_05870042.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292] gi|306838771|ref|ZP_07471605.1| ATP/GTP-binding protein [Brucella sp. NF 2653] gi|306843674|ref|ZP_07476274.1| ATP/GTP-binding protein [Brucella sp. BO1] gi|17983222|gb|AAL52419.1| insertion sequence is21 putative ATP-binding protein [Brucella melitensis bv. 1 str. 16M] gi|148370958|gb|ABQ60937.1| conserved hypothetical protein [Brucella ovis ATCC 25840] gi|161335495|gb|ABX61800.1| Hypothetical protein BCAN_A0727 [Brucella canis ATCC 23365] gi|225640599|gb|ACO00513.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457] gi|255999308|gb|ACU47707.1| hypothetical protein BMI_I709 [Brucella microti CCM 4915] gi|260668012|gb|EEX54952.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292] gi|306275984|gb|EFM57693.1| ATP/GTP-binding protein [Brucella sp. BO1] gi|306406173|gb|EFM62418.1| ATP/GTP-binding protein [Brucella sp. NF 2653] gi|326408735|gb|ADZ65800.1| ATP/GTP-binding protein [Brucella melitensis M28] Length = 231 Score = 188 bits (478), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 102/235 (43%), Positives = 153/235 (65%), Gaps = 13/235 (5%) Query: 18 NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGK 77 +D P+ Q+ + G +R+DL+V ++ AV LID WP+W S V IL GP+G+GK Sbjct: 2 HDAPR----QIPLNLEHQPGYNREDLIVTASNRAAVDLIDRWPNWLSPVTILAGPTGAGK 57 Query: 78 SCLANIWSDKSRSTRF--SNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ 135 + LA IW + + SNI + +++ +PVL+++I F++T LFH+INS+ Q Sbjct: 58 THLAEIWRSGTDALLVDPSNITE--EAVNSAAERPVLIDNIGAEAFDETGLFHLINSVRQ 115 Query: 136 YDS-----SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 + + SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD L VI K+FADRQ Sbjct: 116 HAAQGPGPSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDMLLSGVIHKLFADRQ 175 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 + ++ + +Y+V RMERSL+ A ++VD++D AL + ITR+LAA++L + Q Sbjct: 176 VSVEPHVVSYLVSRMERSLLSAIQIVDRLDRAALEQKSRITRALAAQILADMGQA 230 >gi|261324830|ref|ZP_05964027.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261300810|gb|EEY04307.1| conserved hypothetical protein [Brucella neotomae 5K33] Length = 235 Score = 188 bits (478), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 102/235 (43%), Positives = 153/235 (65%), Gaps = 13/235 (5%) Query: 18 NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGK 77 +D P+ Q+ + G +R+DL+V ++ AV LID WP+W S V IL GP+G+GK Sbjct: 6 HDAPR----QIPLNLEHQPGYNREDLIVTASNRAAVDLIDRWPNWLSPVTILAGPTGAGK 61 Query: 78 SCLANIWSDKSRSTRF--SNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ 135 + LA IW + + SNI ++ ++ +PVL+++I F++T LFH+INS+ Q Sbjct: 62 THLAEIWRSGTDALLVDPSNITEA--AVNSAAERPVLIDNIGAEAFDETGLFHLINSVRQ 119 Query: 136 YDS-----SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 + + SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD L VI K+FADRQ Sbjct: 120 HAAQGPGPSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDILLSGVIHKLFADRQ 179 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 + ++ + +Y+V RMERSL+ A ++VD++D AL + ITR+LAA++L + Q Sbjct: 180 VSVEPHVVSYLVSRMERSLLSAIQIVDRLDRAALEQKSRITRALAAQILADMGQA 234 >gi|256060837|ref|ZP_05450997.1| ATP/GTP-binding protein [Brucella neotomae 5K33] Length = 231 Score = 188 bits (477), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 102/235 (43%), Positives = 153/235 (65%), Gaps = 13/235 (5%) Query: 18 NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGK 77 +D P+ Q+ + G +R+DL+V ++ AV LID WP+W S V IL GP+G+GK Sbjct: 2 HDAPR----QIPLNLEHQPGYNREDLIVTASNRAAVDLIDRWPNWLSPVTILAGPTGAGK 57 Query: 78 SCLANIWSDKSRSTRF--SNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ 135 + LA IW + + SNI ++ ++ +PVL+++I F++T LFH+INS+ Q Sbjct: 58 THLAEIWRSGTDALLVDPSNITEA--AVNSAAERPVLIDNIGAEAFDETGLFHLINSVRQ 115 Query: 136 YDS-----SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 + + SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD L VI K+FADRQ Sbjct: 116 HAAQGPGPSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDILLSGVIHKLFADRQ 175 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 + ++ + +Y+V RMERSL+ A ++VD++D AL + ITR+LAA++L + Q Sbjct: 176 VSVEPHVVSYLVSRMERSLLSAIQIVDRLDRAALEQKSRITRALAAQILADMGQA 230 >gi|294852073|ref|ZP_06792746.1| hypothetical protein BAZG_00989 [Brucella sp. NVSL 07-0026] gi|294820662|gb|EFG37661.1| hypothetical protein BAZG_00989 [Brucella sp. NVSL 07-0026] Length = 236 Score = 188 bits (477), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 102/235 (43%), Positives = 153/235 (65%), Gaps = 13/235 (5%) Query: 18 NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGK 77 +D P+ Q+ + G +R+DL+V ++ AV LID WP+W S V IL GP+G+GK Sbjct: 7 HDAPR----QIPLNLEHQPGYNREDLIVTASNRAAVDLIDRWPNWLSPVTILAGPTGAGK 62 Query: 78 SCLANIWSDKSRSTRF--SNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ 135 + LA IW + + SNI + +++ +PVL+++I F++T LFH+INS+ Q Sbjct: 63 THLAEIWRSGTDALLVDPSNITE--EAVNSAAGRPVLIDNIGAEAFDETGLFHLINSVRQ 120 Query: 136 YDS-----SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 + + SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD L VI K+FADRQ Sbjct: 121 HAAQGPGPSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDMLLSGVIHKLFADRQ 180 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 + ++ + +Y+V RMERSL+ A ++VD++D AL + ITR+LAA++L + Q Sbjct: 181 VSVEPHVVSYLVSRMERSLLSAIQIVDRLDRAALEQKSRITRALAAQILADMGQA 235 >gi|265994659|ref|ZP_06107216.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|262765772|gb|EEZ11561.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] Length = 235 Score = 187 bits (476), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 102/235 (43%), Positives = 153/235 (65%), Gaps = 13/235 (5%) Query: 18 NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGK 77 +D P+ Q+ + G +R+DL+V ++ AV LID WP+W S V IL GP+G+GK Sbjct: 6 HDAPR----QIPLNLEYQPGYNREDLIVTASNRAAVDLIDRWPNWLSPVTILAGPTGAGK 61 Query: 78 SCLANIWSDKSRSTRF--SNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ 135 + LA IW + + SNI + +++ +PVL+++I F++T LFH+INS+ Q Sbjct: 62 THLAEIWRSGTDALLVDPSNITE--EAVNSAAERPVLIDNIGAEAFDETGLFHLINSVRQ 119 Query: 136 YDS-----SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 + + SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD L VI K+FADRQ Sbjct: 120 HAAQGPGPSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDMLLSGVIHKLFADRQ 179 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 + ++ + +Y+V RMERSL+ A ++VD++D AL + ITR+LAA++L + Q Sbjct: 180 VSVEPHVVSYLVSRMERSLLSAIQIVDRLDRAALEQKSRITRALAAQILADMGQA 234 >gi|256113248|ref|ZP_05454116.1| ATP/GTP-binding protein [Brucella melitensis bv. 3 str. Ether] Length = 231 Score = 187 bits (476), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 102/235 (43%), Positives = 153/235 (65%), Gaps = 13/235 (5%) Query: 18 NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGK 77 +D P+ Q+ + G +R+DL+V ++ AV LID WP+W S V IL GP+G+GK Sbjct: 2 HDAPR----QIPLNLEYQPGYNREDLIVTASNRAAVDLIDRWPNWLSPVTILAGPTGAGK 57 Query: 78 SCLANIWSDKSRSTRF--SNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ 135 + LA IW + + SNI + +++ +PVL+++I F++T LFH+INS+ Q Sbjct: 58 THLAEIWRSGTDALLVDPSNITE--EAVNSAAERPVLIDNIGAEAFDETGLFHLINSVRQ 115 Query: 136 YDS-----SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 + + SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD L VI K+FADRQ Sbjct: 116 HAAQGPGPSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDMLLSGVIHKLFADRQ 175 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 + ++ + +Y+V RMERSL+ A ++VD++D AL + ITR+LAA++L + Q Sbjct: 176 VSVEPHVVSYLVSRMERSLLSAIQIVDRLDRAALEQKSRITRALAAQILADMGQA 230 >gi|254701495|ref|ZP_05163323.1| ATP/GTP-binding protein [Brucella suis bv. 5 str. 513] Length = 231 Score = 186 bits (471), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 101/235 (42%), Positives = 152/235 (64%), Gaps = 13/235 (5%) Query: 18 NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGK 77 +D P+ Q+ + G +R+DL+V ++ AV LID WP+W V IL GP+G+GK Sbjct: 2 HDAPR----QIPLNLEHQPGYNREDLIVTASNRAAVDLIDRWPNWLLPVTILAGPTGAGK 57 Query: 78 SCLANIWSDKSRSTRF--SNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ 135 + LA IW + + SNI + +++ +PVL+++I F++T LFH+INS+ Q Sbjct: 58 THLAEIWRSGTDALLVDPSNITE--EAVNSAAERPVLIDNIGAEAFDETGLFHLINSVRQ 115 Query: 136 YDS-----SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 + + SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD L VI K+FADRQ Sbjct: 116 HAAQGPGPSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDMLLSGVIHKLFADRQ 175 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 + ++ + +Y+V RMERSL+ A ++VD++D AL + ITR+LAA++L + Q Sbjct: 176 VSVEPHVVSYLVSRMERSLLSAIQIVDRLDRAALEQKSRITRALAAQILADMGQA 230 >gi|261752040|ref|ZP_05995749.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] gi|261741793|gb|EEY29719.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] Length = 235 Score = 186 bits (471), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 101/235 (42%), Positives = 152/235 (64%), Gaps = 13/235 (5%) Query: 18 NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGK 77 +D P+ Q+ + G +R+DL+V ++ AV LID WP+W V IL GP+G+GK Sbjct: 6 HDAPR----QIPLNLEHQPGYNREDLIVTASNRAAVDLIDRWPNWLLPVTILAGPTGAGK 61 Query: 78 SCLANIWSDKSRSTRF--SNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ 135 + LA IW + + SNI + +++ +PVL+++I F++T LFH+INS+ Q Sbjct: 62 THLAEIWRSGTDALLVDPSNITE--EAVNSAAERPVLIDNIGAEAFDETGLFHLINSVRQ 119 Query: 136 YDS-----SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 + + SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD L VI K+FADRQ Sbjct: 120 HAAQGPGPSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDMLLSGVIHKLFADRQ 179 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 + ++ + +Y+V RMERSL+ A ++VD++D AL + ITR+LAA++L + Q Sbjct: 180 VSVEPHVVSYLVSRMERSLLSAIQIVDRLDRAALEQKSRITRALAAQILADMGQA 234 >gi|237815164|ref|ZP_04594162.1| ATP/GTP-binding protein [Brucella abortus str. 2308 A] gi|260883502|ref|ZP_05895116.1| permease [Brucella abortus bv. 9 str. C68] gi|297248081|ref|ZP_06931799.1| ATP/GTP-binding protein [Brucella abortus bv. 5 str. B3196] gi|237790001|gb|EEP64211.1| ATP/GTP-binding protein [Brucella abortus str. 2308 A] gi|260873030|gb|EEX80099.1| permease [Brucella abortus bv. 9 str. C68] gi|297175250|gb|EFH34597.1| ATP/GTP-binding protein [Brucella abortus bv. 5 str. B3196] Length = 658 Score = 186 bits (471), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 99/217 (45%), Positives = 146/217 (67%), Gaps = 9/217 (4%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRF--S 94 G +R+DL+V ++ AV LID WP+W S V IL GP+G+GK+ LA IW + + S Sbjct: 444 GYNREDLIVTASNRAAVDLIDRWPNWLSPVTILAGPTGAGKTHLAEIWRSGTDALLVDPS 503 Query: 95 NIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDS-----SLLMTARTFPV 149 NI + +++ +PVL+++I F++T LFH+INS+ Q+ + SLLMT+R +P Sbjct: 504 NITE--EAVNSAAERPVLIDNIGAEAFDETGLFHLINSVRQHAAQGPGPSLLMTSRLWPA 561 Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209 +W V LPDL SRLKAATVV+I+ PDD L VI K+FADRQ+ ++ + +Y+V RMERSL Sbjct: 562 NWNVKLPDLASRLKAATVVEIAEPDDMLLSGVIHKLFADRQVSVEPHVVSYLVSRMERSL 621 Query: 210 VFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + A ++VD++D AL + ITR+LAA++L + Q Sbjct: 622 LSAIQIVDRLDRAALEQKSRITRALAAQILADMGQAG 658 >gi|82699601|ref|YP_414175.1| ATP/GTP-binding protein [Brucella melitensis biovar Abortus 2308] gi|189023923|ref|YP_001934691.1| ATP/GTP-binding protein [Brucella abortus S19] gi|260545574|ref|ZP_05821315.1| ATP/GTP-binding protein [Brucella abortus NCTC 8038] gi|260754474|ref|ZP_05866822.1| permease [Brucella abortus bv. 6 str. 870] gi|260761520|ref|ZP_05873863.1| permease [Brucella abortus bv. 2 str. 86/8/59] gi|82615702|emb|CAJ10689.1| ATP/GTP-binding site motif A (P-loop):Protein of unknown function UPF0118 [Brucella melitensis biovar Abortus 2308] gi|189019495|gb|ACD72217.1| ATP/GTP-binding protein [Brucella abortus S19] gi|260096981|gb|EEW80856.1| ATP/GTP-binding protein [Brucella abortus NCTC 8038] gi|260671952|gb|EEX58773.1| permease [Brucella abortus bv. 2 str. 86/8/59] gi|260674582|gb|EEX61403.1| permease [Brucella abortus bv. 6 str. 870] Length = 627 Score = 185 bits (470), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 99/217 (45%), Positives = 146/217 (67%), Gaps = 9/217 (4%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRF--S 94 G +R+DL+V ++ AV LID WP+W S V IL GP+G+GK+ LA IW + + S Sbjct: 413 GYNREDLIVTASNRAAVDLIDRWPNWLSPVTILAGPTGAGKTHLAEIWRSGTDALLVDPS 472 Query: 95 NIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDS-----SLLMTARTFPV 149 NI + +++ +PVL+++I F++T LFH+INS+ Q+ + SLLMT+R +P Sbjct: 473 NITE--EAVNSAAERPVLIDNIGAEAFDETGLFHLINSVRQHAAQGPGPSLLMTSRLWPA 530 Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209 +W V LPDL SRLKAATVV+I+ PDD L VI K+FADRQ+ ++ + +Y+V RMERSL Sbjct: 531 NWNVKLPDLASRLKAATVVEIAEPDDMLLSGVIHKLFADRQVSVEPHVVSYLVSRMERSL 590 Query: 210 VFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + A ++VD++D AL + ITR+LAA++L + Q Sbjct: 591 LSAIQIVDRLDRAALEQKSRITRALAAQILADMGQAG 627 >gi|328543999|ref|YP_004304108.1| ATP/GTP-binding protein [polymorphum gilvum SL003B-26A1] gi|326413743|gb|ADZ70806.1| ATP/GTP-binding protein [Polymorphum gilvum SL003B-26A1] Length = 227 Score = 176 bits (445), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 93/226 (41%), Positives = 138/226 (61%), Gaps = 4/226 (1%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 + QL P + RDD LV ++ A LIDSWP WPS VV+L GP GSGKS L Sbjct: 3 ERPRQLPLILPHEQALGRDDYLVGASNRAAFELIDSWPDWPSAVVVLAGPVGSGKSHLVQ 62 Query: 83 IWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140 IW ++S + ++ + L+ V +E+ ++ LFH++N+ Q +S+ Sbjct: 63 IWHERSGAAVIEAGDLTEGRVEELVSA-GAVAVENAHR-GVDERALFHLLNAARQAGASM 120 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L+T+RT+P +W + L DL SRL+AAT V+I PDDD L +V+VK+FADRQ+ ++ + Y Sbjct: 121 LITSRTWPAAWPLALADLVSRLRAATPVEILEPDDDLLRRVLVKLFADRQLAVEPAVVDY 180 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 +V RMERSL A ++V+ +D AL+ G ITR LA +VL++ Q + Sbjct: 181 LVVRMERSLGVAGRVVEAIDREALANGSRITRPLAGKVLEQIQAGE 226 >gi|304391981|ref|ZP_07373923.1| ATP/GTP-binding protein [Ahrensia sp. R2A130] gi|303296210|gb|EFL90568.1| ATP/GTP-binding protein [Ahrensia sp. R2A130] Length = 223 Score = 171 bits (434), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 90/219 (41%), Positives = 133/219 (60%), Gaps = 6/219 (2%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 +QL P +R DL+V S+ A +D+WP W + V +L GP+GSGKS LA+IWS Sbjct: 7 DQLPLDLPTTAQAARADLVVASSNSHAAACVDAWPDWAAPVAVLAGPTGSGKSHLASIWS 66 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTAR 145 S + S D++L + +LLED+ F+D LFH +N+ Q SLL+T+R Sbjct: 67 SMSHAVVLSPG----DAVL--AGRAMLLEDVTAGGFSDEWLFHAMNAAMQPGGSLLITSR 120 Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 +P WGV LPDL SRL+ +V++ P+D+ L V+ K+FADRQ+ +D + Y + RM Sbjct: 121 QWPGEWGVSLPDLQSRLRLVHLVELHEPNDELLRGVLFKLFADRQLIVDAAVIDYCITRM 180 Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 ERSL A +V ++D L+L+R IT+ L AE L+ T++ Sbjct: 181 ERSLASALAVVRQLDVLSLARKQAITKPLVAEALRMTEE 219 >gi|118590150|ref|ZP_01547553.1| hypothetical protein SIAM614_11568 [Stappia aggregata IAM 12614] gi|118437122|gb|EAV43760.1| hypothetical protein SIAM614_11568 [Stappia aggregata IAM 12614] Length = 226 Score = 168 bits (425), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 87/218 (39%), Positives = 130/218 (59%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL P +SRDD LV + A L++ WP WPS VV+L GP G+GK+ L + D Sbjct: 7 QLPLELPHEAALSRDDYLVGGSNRAAFELLERWPDWPSPVVVLAGPVGAGKTHLVRAFQD 66 Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTART 146 ++ + + S+ P + + L ++T LFH++N+ Q ++L+T+RT Sbjct: 67 ETGAVVLPAAELTPHSVQTLVAAPACVIEDAHLGIDNTALFHLLNAARQAGKTVLITSRT 126 Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206 +P SW + L DL SRL+AAT V+I PDDD L +V+VK+FADRQI +D+ + Y+V RME Sbjct: 127 WPASWKISLADLQSRLRAATPVEILEPDDDLLRRVLVKLFADRQIAVDQGVVDYLVVRME 186 Query: 207 RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 RSL A + V+ +D AL+ + IT+ LA VL+ + Sbjct: 187 RSLEVAMRAVEAIDQEALAGRVKITKPLAGRVLENVHK 224 >gi|148255247|ref|YP_001239832.1| regulatory inactivation of DnaA Hda protein [Bradyrhizobium sp. BTAi1] gi|146407420|gb|ABQ35926.1| regulatory inactivation of DnaA Hda protein [Bradyrhizobium sp. BTAi1] Length = 228 Score = 164 bits (416), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 86/220 (39%), Positives = 134/220 (60%), Gaps = 5/220 (2%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL F+ P ++RD+ L + + L+D+WP WP+R + LVGP GSGKS LA IW++ Sbjct: 9 QLAFALPHAESLTRDNFLEGAGNAAGLALVDAWPEWPARTMFLVGPDGSGKSHLAAIWAE 68 Query: 87 KSRSTRFSNIAKSLDSILID---TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMT 143 +S + S A++LD + ++LED+ F++ LFH++N Q ++ +L+T Sbjct: 69 QSGARSLS--AQALDIAAVPRALATGALVLEDLSPTAFDERALFHLLNLARQDEAYILIT 126 Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203 AR P + V L DL SRL+A VV + PDD +IVK+ ADRQ+ ID+ + +Y+ Sbjct: 127 AREAPATMPVALSDLRSRLRACPVVTLLPPDDQLFRALIVKLAADRQLTIDEAVVSYLAT 186 Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 R+ERS A + V +DN +L G +TR+LAAE+L+ ++ Sbjct: 187 RIERSYAAARQTVALLDNESLRLGRPVTRALAAELLRPSE 226 >gi|254505101|ref|ZP_05117252.1| hypothetical protein SADFL11_5141 [Labrenzia alexandrii DFL-11] gi|222441172|gb|EEE47851.1| hypothetical protein SADFL11_5141 [Labrenzia alexandrii DFL-11] Length = 226 Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 88/222 (39%), Positives = 134/222 (60%), Gaps = 4/222 (1%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL P + R+D LV + + A L++ WP WPS V+IL GP GSGK+ L + D Sbjct: 7 QLPLDLPHDAALGREDYLVGKSNQAAFELLERWPDWPSPVIILAGPVGSGKTHLVEAFRD 66 Query: 87 KSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTA 144 ++ + + ++ ++ S L+ P + + N+T LFH++N+ Q ++L+T+ Sbjct: 67 ETGAEVIQARDLTEAGVSALVAA--PACVVEDAHRGVNNTALFHLLNAARQAGKTVLITS 124 Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 RT+P SW + LPDL SRL+AAT V++ PDDD L +V+VK+FADRQI +D + Y+V R Sbjct: 125 RTWPASWKISLPDLLSRLRAATPVEVLEPDDDLLRRVLVKLFADRQIGVDIGVVDYLVVR 184 Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 MERSL A + VD +D AL+ + I++ LA VL+ D Sbjct: 185 MERSLEVALRAVDAIDREALAGRVKISKPLAGRVLETVTGTD 226 >gi|240850719|ref|YP_002972119.1| hypothetical protein Bgr_11870 [Bartonella grahamii as4aup] gi|240267842|gb|ACS51430.1| hypothetical protein Bgr_11870 [Bartonella grahamii as4aup] Length = 229 Score = 161 bits (408), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 88/222 (39%), Positives = 129/222 (58%), Gaps = 5/222 (2%) Query: 24 KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI 83 +E QL +FP +DL+V + A +LID WP+W + +LVG GSGK+ +NI Sbjct: 4 RETQLSLNFPYDPIFQFEDLVVTESNRMAFQLIDHWPNWSLPIAVLVGKEGSGKTHFSNI 63 Query: 84 WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYD-----S 138 W K+ + R + + + L+EDI + N+T+LFH+INSI Q + + Sbjct: 64 WLQKADAFRIQHNEIDQAVTMASLGRSFLIEDIGAGEINETELFHLINSIKQANLDARQA 123 Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198 +LLMTART P +W + L DL SRL + V+I+ PDD L V K+F+DRQ+ + Sbjct: 124 TLLMTARTLPSAWNLKLNDLKSRLNSVMFVEINQPDDALLTAVAFKLFSDRQLIVHPDTV 183 Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 Y+V R ERSL ++++D +D LAL R ITR++ AEVL Sbjct: 184 YYLVSRCERSLFSLKRVIDSVDQLALQRKRKITRAIIAEVLN 225 >gi|163868487|ref|YP_001609696.1| hypothetical protein Btr_1339 [Bartonella tribocorum CIP 105476] gi|161018143|emb|CAK01701.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476] Length = 229 Score = 161 bits (408), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 87/221 (39%), Positives = 128/221 (57%), Gaps = 5/221 (2%) Query: 24 KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI 83 +E QL +FP DDL+V + A +LID WP+W + +LVG GSGK+ ++I Sbjct: 4 RETQLSLNFPYKPIFQFDDLVVTDSNRMAFQLIDHWPNWSLPIAVLVGKEGSGKTHFSSI 63 Query: 84 WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYD-----S 138 W K+ + R + P L+EDID + N+T+LFH+INS+ Q + + Sbjct: 64 WLQKANAFRIQRNKIDQAVAMASLGSPFLIEDIDAGEINETELFHLINSVKQANIDARQA 123 Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198 +LLMTA+T P +W + L DL SRL + V+I+ PDD L V K+F+DRQ+ + Sbjct: 124 TLLMTAQTLPSAWNLKLNDLKSRLNSVMFVEINQPDDALLTAVAFKLFSDRQLIVHPDTV 183 Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 Y++ R ERSL + ++D +D LAL R ITR++ AEVL Sbjct: 184 YYLISRCERSLFSLKHVIDSVDQLALQRKRKITRAVIAEVL 224 >gi|316933720|ref|YP_004108702.1| hypothetical protein Rpdx1_2378 [Rhodopseudomonas palustris DX-1] gi|315601434|gb|ADU43969.1| hypothetical protein Rpdx1_2378 [Rhodopseudomonas palustris DX-1] Length = 225 Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 89/217 (41%), Positives = 133/217 (61%), Gaps = 3/217 (1%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL P +SR+D L SA A+ LI+SWP WP+R+++LVGP GSGKS LA IW++ Sbjct: 9 QLALDLPHAESLSREDFLEGSANTAALSLIESWPDWPNRIMMLVGPEGSGKSHLAAIWAE 68 Query: 87 --KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTA 144 +RST + + + T V++ED+ F++ LFH+IN + ++ +L T Sbjct: 69 LAGARSTAAQALNAAAVPGALAT-GAVVVEDLAPGSFDERALFHLINMAREDEAYVLFTG 127 Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 R P ++ V L DL SRL+A VV + PDD +IVK ADRQ+ ID L Y+ R Sbjct: 128 RLAPSAFPVELRDLKSRLRAVPVVSLLPPDDALFRALIVKFCADRQMCIDAGLVGYLANR 187 Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++RS V A ++V+K+D +AL G +TR+LA+E+L++ Sbjct: 188 IDRSFVAARRVVEKLDTMALRLGRPVTRALASEILRD 224 >gi|86749611|ref|YP_486107.1| hypothetical protein RPB_2491 [Rhodopseudomonas palustris HaA2] gi|86572639|gb|ABD07196.1| regulatory inactivation of DnaA Hda protein [Rhodopseudomonas palustris HaA2] Length = 225 Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 88/222 (39%), Positives = 135/222 (60%), Gaps = 5/222 (2%) Query: 20 QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSC 79 QP+ QL P +SR+D L +A A+RLI+SWP WP+R+++LVGP GSGKS Sbjct: 6 QPR----QLALDLPHAESLSREDFLEGTANSSALRLIESWPDWPNRIMLLVGPEGSGKSH 61 Query: 80 LANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL-EDIDLLDFNDTQLFHIINSIHQYDS 138 LA+IW++++ + S A + ++ + L+ ED+ F++ LFH+IN + ++ Sbjct: 62 LASIWAEQAGARSTSAQALTAANVPGELATGALVVEDLTPGSFDERALFHLINLAREDEA 121 Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198 +L+TAR P ++ L DL SRL+A VV + PDD +IVK ADRQ+ ID L Sbjct: 122 YVLITARLAPAAFPADLRDLRSRLRAVPVVTLLPPDDALFRALIVKFCADRQMSIDANLV 181 Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 Y+ R++RS A + V+++D AL G +TR+LAA+VL+ Sbjct: 182 GYLANRIDRSFAAARQTVERLDTEALRLGRPVTRALAADVLR 223 >gi|91977422|ref|YP_570081.1| hypothetical protein RPD_2953 [Rhodopseudomonas palustris BisB5] gi|91683878|gb|ABE40180.1| regulatory inactivation of DnaA Hda protein [Rhodopseudomonas palustris BisB5] Length = 225 Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 87/223 (39%), Positives = 136/223 (60%), Gaps = 5/223 (2%) Query: 20 QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSC 79 QP+ QL P +SR+D L +A A++LI+SWP WP+R+++LVGP GSGKS Sbjct: 6 QPR----QLALDLPHAESLSREDFLEGTANTAALKLIESWPDWPNRIMLLVGPEGSGKSH 61 Query: 80 LANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL-EDIDLLDFNDTQLFHIINSIHQYDS 138 LA+IW++++ + S A + ++ + L+ ED+ F++ LFH++N + ++ Sbjct: 62 LASIWAEQAGARSTSAQALTPANVPGELATGALVVEDLTPGSFDERALFHLMNLAREDEA 121 Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198 +L+TAR P ++ L DL SRL+A VV + PDD +IVK ADRQ+ ID L Sbjct: 122 YVLITARLAPSAFPAELRDLRSRLRAVPVVSLLAPDDALFRALIVKFCADRQMSIDANLV 181 Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 Y+ R++RS A + V+++D AL G +TR+LAAE+L+E Sbjct: 182 GYLANRIDRSFAAARQAVERLDTEALRLGRPVTRALAAELLRE 224 >gi|75675787|ref|YP_318208.1| hypothetical protein Nwi_1595 [Nitrobacter winogradskyi Nb-255] gi|74420657|gb|ABA04856.1| regulatory inactivation of DnaA Hda protein [Nitrobacter winogradskyi Nb-255] Length = 226 Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 86/217 (39%), Positives = 132/217 (60%), Gaps = 5/217 (2%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL F+ P SRDD L A A+ LI+SWP WP+R+++L GP G GKS LA IW++ Sbjct: 9 QLAFTLPHAESFSRDDFLEGPANAAALSLIESWPEWPNRIMLLAGPEGCGKSHLAAIWAE 68 Query: 87 KSRSTRFSNIAKSLDSILID---TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMT 143 ++ + S A+ L + + T +++ED++ F++ LFH++N + + +LMT Sbjct: 69 RAGARSIS--AQGLTAATVPMALTTGALVVEDLNPKTFDELALFHLMNLAREEAAFVLMT 126 Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203 AR P + + L DL SRL+A VV + PDD L +IVK ADRQ+ ID+ + ++I Sbjct: 127 ARVTPAAIEIGLRDLRSRLRAVPVVTLMPPDDHLLRALIVKFSADRQMNIDEAIVSFIAT 186 Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 R ERS+ A V+++D +L G +TR+LAAE+L+ Sbjct: 187 RTERSVAAARLAVEQLDAESLRLGRPVTRALAAELLR 223 >gi|115525284|ref|YP_782195.1| hypothetical protein RPE_3282 [Rhodopseudomonas palustris BisA53] gi|115519231|gb|ABJ07215.1| regulatory inactivation of DnaA Hda protein [Rhodopseudomonas palustris BisA53] Length = 224 Score = 158 bits (400), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 84/224 (37%), Positives = 137/224 (61%), Gaps = 5/224 (2%) Query: 22 KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 + + QL + P +SRDD L A A+ L+D WP WP+RV++L GP GSGKS LA Sbjct: 3 QGQPRQLALALPHAESLSRDDFLEGPANRVALSLVDHWPDWPNRVMLLSGPEGSGKSHLA 62 Query: 82 NIWSDKSRSTRFSNIAKSLDSILID---TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDS 138 IW++++ + S A++L S + T +++ED+ F++ LFH++N + + Sbjct: 63 AIWAEQAGARSIS--AQALTSAAVPAALTTGALVVEDLTPGGFDERALFHLMNLAREDQA 120 Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198 +L+TAR PV++ + L DL SRL+A V+++ PDD +IVK ADRQ+ +D+ L Sbjct: 121 YVLITARIPPVAFEIDLRDLRSRLRAVPVLELLPPDDQLFRALIVKFCADRQMSVDEALV 180 Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +++ R++RS A + V+K+D AL G +TR+LAAE+ ++ Sbjct: 181 SFLANRIDRSFAAARRAVEKLDTEALRLGRPVTRALAAELFRDA 224 >gi|49475708|ref|YP_033749.1| hypothetical protein BH09540 [Bartonella henselae str. Houston-1] gi|49238515|emb|CAF27747.1| hypothetical protein BH09540 [Bartonella henselae str. Houston-1] Length = 229 Score = 158 bits (400), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 87/222 (39%), Positives = 131/222 (59%), Gaps = 5/222 (2%) Query: 24 KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI 83 +E QL +F DDL+V + A +LID WP+W + +LVG GSGK+ +++ Sbjct: 4 RETQLPLNFSYNPIFQFDDLVVTESNRMAFQLIDHWPNWILPIAVLVGKEGSGKTHFSSV 63 Query: 84 WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYD-----S 138 W++K+ + RF + + + L+EDIDL + ++T LFH+INS+ Q + + Sbjct: 64 WAEKADALRFHRNEIDQAIAVASSGRSFLIEDIDLGEISETGLFHLINSVKQANLDMCQA 123 Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198 +LLMTART P +W + L DL SRL + +V I+ PDD L V K+F+DRQI + Sbjct: 124 TLLMTARTVPSTWNLKLNDLKSRLNSIMLVAINQPDDALLTAVAFKLFSDRQITVHPDTV 183 Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 Y+V R ERSL ++++D +D LAL R ITR++ EVL Sbjct: 184 YYLVNRCERSLFSLKRVIDSVDRLALQRKSKITRAVIGEVLN 225 >gi|146340319|ref|YP_001205367.1| hypothetical protein BRADO3342 [Bradyrhizobium sp. ORS278] gi|146193125|emb|CAL77136.1| conserved hypothetical protein [Bradyrhizobium sp. ORS278] Length = 225 Score = 157 bits (398), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 81/217 (37%), Positives = 130/217 (59%), Gaps = 5/217 (2%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL + P ++RD+ L + L+D+WP WP+ + LVGP GSGKS LA IW++ Sbjct: 9 QLALALPHAESLTRDNFLEGPGNAAGLALVDAWPEWPANTMFLVGPDGSGKSHLAAIWAE 68 Query: 87 KSRSTRFSNIAKSLDSILID---TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMT 143 +S + S A +LD+ + ++LED+ D ++ LFH++N Q ++ +L+T Sbjct: 69 RSGARSLS--AHALDAGAVPGALATGALVLEDLTAADLDERALFHLLNLARQDEAYILIT 126 Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203 AR PV+ + L DL SRL+A V+ + PDD +IVK+ ADRQ+ ID+ + +Y+ Sbjct: 127 AREAPVALPIALADLRSRLRAVPVITLLPPDDQLFRALIVKLAADRQLAIDETVVSYLAS 186 Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 R+ERS A + + +D+ +L G +TR+LAAE+L+ Sbjct: 187 RIERSYAAARQTIALLDDESLRLGRPVTRALAAELLR 223 >gi|307946765|ref|ZP_07662100.1| ATP/GTP-binding protein [Roseibium sp. TrichSKD4] gi|307770429|gb|EFO29655.1| ATP/GTP-binding protein [Roseibium sp. TrichSKD4] Length = 225 Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 90/220 (40%), Positives = 130/220 (59%), Gaps = 6/220 (2%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL P + RDD LV + + A L++SWP+WPS VVIL GP G+GK+ L Sbjct: 7 QLPLDLPYEAALGRDDYLVGRSNQAAYELLESWPNWPSPVVILAGPVGAGKTHLVEALRA 66 Query: 87 KSRSTRFSNIAKSLDSILID---TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMT 143 S + + A L+ + V++ED N+T LFH++N+ Q +L+T Sbjct: 67 DSGAAVVA--APKLEEASVPDLVAAGSVVVEDAHQ-GVNETALFHLLNAARQAGVLVLIT 123 Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203 +RT+P +W + LPDL SRL+AAT V+I PDDD L +V++K+F+DRQ+ +D + Y+V Sbjct: 124 SRTWPATWSIQLPDLLSRLRAATPVEILEPDDDLLRQVLLKLFSDRQLAVDFAVIDYLVV 183 Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 RMERSL A VD +D AL+ + IT+ LA +VL Q Sbjct: 184 RMERSLEVAINAVDAIDREALAGRVKITKQLAGKVLDRVQ 223 >gi|92117644|ref|YP_577373.1| hypothetical protein Nham_2116 [Nitrobacter hamburgensis X14] gi|91800538|gb|ABE62913.1| regulatory inactivation of DnaA Hda protein [Nitrobacter hamburgensis X14] Length = 226 Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 85/222 (38%), Positives = 130/222 (58%), Gaps = 5/222 (2%) Query: 22 KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 + + QL F P +SRDD L A A+ LI+SWP WP+RV++L GP G GKS LA Sbjct: 4 RPRPRQLAFVLPHAESLSRDDFLEGPANAAALSLIESWPEWPNRVMLLAGPEGCGKSHLA 63 Query: 82 NIWSDKSRSTRFSNIAKSLDSILID---TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDS 138 IW++++ + S A L + + +++EDI+ F++ LFH++N + + Sbjct: 64 TIWAEQAGARSIS--AHGLTAAAVPGALATGALVVEDINPHAFDELALFHLMNLAREDGA 121 Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198 +LMTAR P + + L DL SRL+A VV + PDD L +I+K ADRQ+ ID+ + Sbjct: 122 FVLMTARVPPAAIEIGLRDLQSRLRAVPVVTLMPPDDQLLRALIIKFCADRQMSIDETVV 181 Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 +I R ERS A ++++D +L G +TR+LAAE+L+ Sbjct: 182 HFIATRTERSFAAARHAIERLDAESLRLGRPVTRALAAELLR 223 >gi|192291830|ref|YP_001992435.1| hypothetical protein Rpal_3459 [Rhodopseudomonas palustris TIE-1] gi|192285579|gb|ACF01960.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1] Length = 225 Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 89/217 (41%), Positives = 130/217 (59%), Gaps = 5/217 (2%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL P +SR+D L SA A+ LI+SWP WP+R+++LVGP GSGKS LA IW++ Sbjct: 9 QLALDLPHAESLSREDFLEGSANTAALSLIESWPDWPNRIMMLVGPEGSGKSHLAAIWAE 68 Query: 87 --KSRSTRFSNI-AKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMT 143 +RST + A S+ L V++ED+ F++ LFH++N + ++ +L T Sbjct: 69 LAGARSTAAQALNAASVPGAL--ATGAVVVEDLVPGSFDERALFHLMNMAREDEAYVLFT 126 Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203 R P + + L DL SRL+ VV + PDD +IVK ADRQ+ ID L Y+ Sbjct: 127 GRVEPSALSIDLRDLKSRLRTVPVVSLLPPDDALFRALIVKFCADRQMCIDAALVGYLAN 186 Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 R++RS V A ++V+K+D AL G +TR+LA+EVL+ Sbjct: 187 RIDRSFVAARQVVEKLDTTALRLGRPVTRALASEVLR 223 >gi|39936112|ref|NP_948388.1| hypothetical protein RPA3049 [Rhodopseudomonas palustris CGA009] gi|39649966|emb|CAE28490.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009] Length = 229 Score = 155 bits (392), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 87/216 (40%), Positives = 129/216 (59%), Gaps = 3/216 (1%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL P +SR+D L SA A+ LI+SWP WP+R+++LVGP GSGKS LA IW++ Sbjct: 13 QLALDLPHAESLSREDFLEGSANTAALSLIESWPDWPNRIMMLVGPEGSGKSHLAAIWAE 72 Query: 87 --KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTA 144 +RST + + + T V++ED+ F++ LFH++N + ++ +L T Sbjct: 73 LAGARSTAAQALNAAAVPGALAT-GAVVVEDLVPGSFDERALFHLMNMAREDEAYVLFTG 131 Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 R P + + L DL SRL+ VV + PDD +IVK ADRQ+ ID L Y+ R Sbjct: 132 RVEPSALSIELRDLKSRLRTVPVVSLLPPDDALFRALIVKFCADRQMCIDAALVGYLANR 191 Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 ++RS V A ++V+K+D AL G +TR+LA+EVL+ Sbjct: 192 IDRSFVAARQVVEKLDTTALRLGRPVTRALASEVLR 227 >gi|27379234|ref|NP_770763.1| hypothetical protein bll4123 [Bradyrhizobium japonicum USDA 110] gi|27352385|dbj|BAC49388.1| bll4123 [Bradyrhizobium japonicum USDA 110] Length = 225 Score = 155 bits (391), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 84/218 (38%), Positives = 131/218 (60%), Gaps = 3/218 (1%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL FS P +SRD+ L A + LID WP WP+R++ L GP GSGKS LA IW++ Sbjct: 9 QLAFSLPHAESLSRDNFLEGPANAAGLALIDGWPEWPNRIMWLAGPEGSGKSHLAAIWAE 68 Query: 87 KS--RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTA 144 ++ RST + ++ + + T +++ED+ DF++ LFH++N + + +L T Sbjct: 69 EAGARSTTANALSAAGVPGALAT-GALVVEDLKAKDFDERALFHLMNLAREDGAYVLFTG 127 Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 R P + + L DL SRL+A VV + PDD +IVK ADRQ+ +D+ + +Y+ R Sbjct: 128 RDVPAALDIELNDLRSRLRAVPVVMLLPPDDQLFRGLIVKFCADRQLTVDESVVSYLATR 187 Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +ERS A + V+ +D+ AL G +TR+LAAE+L++ Sbjct: 188 LERSSAAARQAVELLDSEALRLGRPVTRALAAELLRDA 225 >gi|49474323|ref|YP_032365.1| hypothetical protein BQ07360 [Bartonella quintana str. Toulouse] gi|49239827|emb|CAF26220.1| hypothetical protein BQ07360 [Bartonella quintana str. Toulouse] Length = 229 Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 86/222 (38%), Positives = 127/222 (57%), Gaps = 5/222 (2%) Query: 24 KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI 83 +E QL F DDL+V + A +LID WP+W + +LVG GSGK+ ++I Sbjct: 4 RETQLPLDFSYNPVFQFDDLVVTESNRMAFQLIDHWPNWILPIAVLVGKEGSGKTHFSSI 63 Query: 84 WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYD-----S 138 W+ K+ + R + + K L+EDID + ++T LFH+IN++ Q + + Sbjct: 64 WAQKTDALRLHRNEIDQAIAIGSSGKSFLIEDIDAGEISETGLFHLINNVKQANLDTRQA 123 Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198 +LL+TART P +W + L DL SRL + +VKI+ PDD L V K+F+DRQI + Sbjct: 124 TLLITARTVPSAWNLKLNDLKSRLNSVMLVKINQPDDALLTAVAFKLFSDRQIIVHPDTV 183 Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 Y+V R ERSL + ++D +D LAL R ITR++ EVL Sbjct: 184 YYLVSRCERSLFSLKHVIDSVDRLALQRKSKITRAVIGEVLN 225 >gi|182678282|ref|YP_001832428.1| chromosomal replication initiator DnaA [Beijerinckia indica subsp. indica ATCC 9039] gi|182634165|gb|ACB94939.1| Chromosomal replication initiator DnaA [Beijerinckia indica subsp. indica ATCC 9039] Length = 232 Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 81/225 (36%), Positives = 126/225 (56%), Gaps = 6/225 (2%) Query: 20 QPKNKEEQLFFSFPR--CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGK 77 +PK QL F C GI +D V + E A +++ WP WP V++L GP+G+GK Sbjct: 2 RPKEPARQLTFDLAGDPCFGI--EDFFVSESNENAYAMLELWPDWPDSVLLLRGPAGAGK 59 Query: 78 SCLANIWSDKS--RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ 135 S L IW+ ++ R + A D + P+L+ED D + + LFH++N + Sbjct: 60 SHLGAIWAARAGARILTARDFAAERDLESLARSGPLLIEDADAIGEAEASLFHLLNLVRH 119 Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195 + +L++TAR P WG+ + DL SRL+ A V I PD+D + ++VK+F DRQ+ +D Sbjct: 120 HHHALVLTARRAPDFWGLRIADLLSRLRLAPVAAIEPPDEDLMRAILVKLFLDRQLVVDT 179 Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 L + ++RS A V+++D AL+RG IT+SLA VL+ Sbjct: 180 GLIEHAALHLDRSFEAARDFVERLDREALARGARITKSLAGTVLQ 224 >gi|300024349|ref|YP_003756960.1| chromosomal replication initiator, DnaA [Hyphomicrobium denitrificans ATCC 51888] gi|299526170|gb|ADJ24639.1| chromosomal replication initiator, DnaA [Hyphomicrobium denitrificans ATCC 51888] Length = 224 Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 82/215 (38%), Positives = 124/215 (57%), Gaps = 2/215 (0%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 EQL F P + +D LV + AV LID WP WP ILVGP GSGK+ LAN+W Sbjct: 6 EQLVFEMPHRAAMGLEDFLVSDSNAAAVALIDRWPDWPIGAAILVGPRGSGKTHLANVWQ 65 Query: 86 DKSRSTRFSNIAKSLDSI-LIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTA 144 +S + + + +++ + + V++E+I+ L ++ LFH++N + + +L+T Sbjct: 66 LRSEAALHPAASLTRENVPAVASAGAVIIENIETLT-DEAALFHLLNLVREQRLQVLLTT 124 Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 T P + LPDL SRLKA + I PDD L V+VK+FADRQ+ ++ + Y++ R Sbjct: 125 DTAPGDLKIALPDLLSRLKALPLASIEAPDDALLRAVLVKLFADRQLSVEPHIVDYVLVR 184 Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 MERS+ AE+ V + D AL +TR++AA L Sbjct: 185 MERSMSAAERFVAEADRQALVLQRRVTRAIAAAAL 219 >gi|85717202|ref|ZP_01048159.1| hypothetical protein NB311A_18728 [Nitrobacter sp. Nb-311A] gi|85695982|gb|EAQ33883.1| hypothetical protein NB311A_18728 [Nitrobacter sp. Nb-311A] Length = 226 Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 84/216 (38%), Positives = 126/216 (58%), Gaps = 3/216 (1%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL F+ P SRDD L A A+ LI+SWP WP+R+++L GP G GKS LA IW++ Sbjct: 9 QLAFALPHAESFSRDDFLEGHANAAALSLIESWPEWPNRIMLLAGPEGCGKSHLAAIWAE 68 Query: 87 --KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTA 144 +RS + + + + T +++ED++ F++ LFH++N + + +L+TA Sbjct: 69 LAGARSISAQGLTAATVPMALAT-GALVVEDLNPQTFDELALFHLMNLAREETAFVLITA 127 Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 R PV+ + L DL SRL+A VV + PDD +IVK ADRQ+ ID+ + I R Sbjct: 128 RVTPVAIEIGLRDLRSRLRAVPVVTLMPPDDQLFRALIVKFSADRQMNIDEAVVNLIATR 187 Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 ERS A V ++D +L G +TR+LAAE+L+ Sbjct: 188 TERSFAAARLAVQRLDTESLRLGRPVTRALAAELLR 223 >gi|121602210|ref|YP_989063.1| hypothetical protein BARBAKC583_0767 [Bartonella bacilliformis KC583] gi|120614387|gb|ABM44988.1| conserved hypothetical protein [Bartonella bacilliformis KC583] Length = 229 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 86/228 (37%), Positives = 133/228 (58%), Gaps = 9/228 (3%) Query: 24 KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI 83 +E QL P D+L+V + A +LID+WP+W + ILVG GSGK+ +++ Sbjct: 4 REVQLPLDLPYESVFCFDNLVVTDSNRMAFQLIDNWPNWILPIAILVGKEGSGKTHFSSV 63 Query: 84 WSDKSRSTRFSNIAKSLDSI--LIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYD---- 137 W+ K+ + + +D + L+ + K +L+E+ID ++T LFH+INSI Q + Sbjct: 64 WAQKANALTVDR--EDIDRVISLVSSGKSLLIENIDAGQISETGLFHLINSIQQANLDAR 121 Query: 138 -SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196 ++LL+TART P +W + L DL SRL + +V I+ PDD L V K+F+DRQI + Sbjct: 122 QTNLLITARTVPSTWNLKLNDLKSRLNSVMLVAINQPDDALLTAVAFKLFSDRQIAVHSD 181 Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 + Y+V R ERSL +++VD +D LAL R ITR++ E + Q Sbjct: 182 IIHYLVTRCERSLFALQRVVDSVDRLALQRKSKITRTVIGEAINMQMQ 229 >gi|218512961|ref|ZP_03509801.1| hypothetical protein Retl8_04315 [Rhizobium etli 8C-3] Length = 166 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 81/163 (49%), Positives = 103/163 (63%), Gaps = 2/163 (1%) Query: 17 KNDQPKNKE-EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGS 75 KN PK K EQL F RDDLL+ + AV ++D+WP+WPS VV+L GP GS Sbjct: 5 KNADPKRKAGEQLPLVFSHDAASGRDDLLISERLAAAVSIVDAWPAWPSPVVVLAGPVGS 64 Query: 76 GKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ 135 GKS LA IW + S + S D+ + PVL ED D L F+D LFH+INS+ + Sbjct: 65 GKSHLARIWRELSGAVDIRPDLGS-DAAVAAAAGPVLFEDADRLGFDDNALFHVINSVRE 123 Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178 + +SLLMT+R +P+SW V LPDL SRLKAATVV+I PD+ L Sbjct: 124 HGTSLLMTSRLWPISWPVLLPDLRSRLKAATVVEIGEPDEALL 166 >gi|319408623|emb|CBI82278.1| conserved hypothetical protein [Bartonella schoenbuchensis R1] Length = 231 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 86/229 (37%), Positives = 128/229 (55%), Gaps = 11/229 (4%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 E QL F RDDL+V + A +L+D WP+W + +LVG GSGK+ +++W Sbjct: 5 ETQLPLDFSYESVFRRDDLVVTDSNRMAFQLVDHWPNWVLPIAVLVGKEGSGKTHFSSVW 64 Query: 85 SDKSRSTRFSNIAKSLDSILI--DTRKPVLLEDIDLLDFNDTQLFHIINSIHQYD----- 137 K+ + +D ++ + + +L+EDID N+T LFH+INSI Q + Sbjct: 65 VQKANALIVHR--DEIDQVITAASSGRSLLIEDIDTGKINETGLFHLINSIKQANLNVRQ 122 Query: 138 --SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195 ++LLMTART P +W + L DL SRL + +V+I PDD L + K+F+DRQI + Sbjct: 123 GQATLLMTARTLPSTWDLKLNDLKSRLNSVMLVEIDQPDDALLTAIAFKLFSDRQITVHS 182 Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 + Y+V R ERSL ++D +D LAL R ITR++ EV+ Q Sbjct: 183 DIIHYLVSRCERSLFALRCVIDSVDKLALQRKRKITRAVICEVINTQMQ 231 >gi|114769541|ref|ZP_01447167.1| hypothetical protein OM2255_07405 [alpha proteobacterium HTCC2255] gi|114550458|gb|EAU53339.1| hypothetical protein OM2255_07405 [alpha proteobacterium HTCC2255] Length = 231 Score = 149 bits (375), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 82/219 (37%), Positives = 126/219 (57%), Gaps = 7/219 (3%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 +QL F P R+D V S+ AV+++++W +WP +IL+GPSGSGKS LANIW+ Sbjct: 3 DQLTFDLPIKTAFGREDFFVTSSNSTAVKILENWKNWPLSKLILIGPSGSGKSHLANIWT 62 Query: 86 DKSRSTRFSNIAKSLDSI--LIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSL 140 + + R AK L I + ++ + LE +++ N + FH+ N + + L Sbjct: 63 EMTNGVRIE--AKYLMDIDLQVASQSALCLEGFEVIAGNQELEAHAFHLHNLAQESGAPL 120 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L+T + P +W + LPDL SR++ +V ++ PDD L V++K F DRQI ID K+ Y Sbjct: 121 LITGCSTPSTWNLLLPDLLSRIQGTSVAQLQSPDDVLLNAVLIKQFNDRQIAIDPKVVTY 180 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 +++RMERS LV+++D AL G I+ LA VL Sbjct: 181 LLKRMERSFASISYLVNELDKGALKVGKPISIKLARNVL 219 >gi|312112993|ref|YP_004010589.1| hypothetical protein Rvan_0200 [Rhodomicrobium vannielii ATCC 17100] gi|311218122|gb|ADP69490.1| hypothetical protein Rvan_0200 [Rhodomicrobium vannielii ATCC 17100] Length = 232 Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 78/214 (36%), Positives = 124/214 (57%), Gaps = 2/214 (0%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL PR D V + ++A L+ WP W + ++ GP SGK+ LA+IW Sbjct: 4 QLVLDLPRRFAYDEADFFVTARNDRAFGLVCQWPDWHAPAAVIWGPPQSGKTYLAHIW-- 61 Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTART 146 ++R+ +L+ + R+P++LED+D +T LFH +N ++ S +L+TART Sbjct: 62 QARANAAFADPAALEGHVWAARQPLVLEDVDASALPETALFHHLNLAREHGSFILLTART 121 Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206 P SW + LPDL SR+++ +I PD++ L +++K F+DR I I + AY+VQR+E Sbjct: 122 PPGSWRIALPDLRSRIRSYPTAEIQPPDEEHLAALLLKHFSDRGIEIAPDVIAYLVQRIE 181 Query: 207 RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 RS+ A+ + +D AL+ ITR+ AA+VLK Sbjct: 182 RSMAAADAVASLLDKAALAERRRITRAFAAKVLK 215 >gi|323137708|ref|ZP_08072784.1| Chromosomal replication initiator DnaA [Methylocystis sp. ATCC 49242] gi|322397005|gb|EFX99530.1| Chromosomal replication initiator DnaA [Methylocystis sp. ATCC 49242] Length = 234 Score = 148 bits (374), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 82/215 (38%), Positives = 128/215 (59%), Gaps = 2/215 (0%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL P RDD L + A+ +++ WP WP R++ L+GP GSGKS L IW++ Sbjct: 10 QLPLELPVEPRFGRDDFLPAACNRAALAMVERWPDWPDRILSLIGPPGSGKSHLLAIWAE 69 Query: 87 KSRSTRFSNIA-KSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTAR 145 + + R + +L+++ ++++D+D + ++T LFH++N ++ LLM+A Sbjct: 70 SAGALRVDPVTLPTLEALNAAAPAAIVIDDVDRVR-DETALFHLLNFAVEHRVFLLMSAS 128 Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 P V LPDL SRL+ A VV+I PDD+ + V+ K+F DRQ+ +D+ AY+ R+ Sbjct: 129 RRPRPEDVRLPDLLSRLRRAPVVEIGAPDDELMRAVLEKLFRDRQLIVDEPALAYVSLRL 188 Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 ERSL A LV +D AL+R ITR+LAAEV++ Sbjct: 189 ERSLDAARALVAALDREALARRRPITRALAAEVME 223 >gi|40063570|gb|AAR38359.1| conserved hypothetical protein [uncultured marine bacterium 582] Length = 227 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 130/221 (58%), Gaps = 3/221 (1%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL F P + RDD + + AV +ID+W W S+ ++L GP G+GK+ L+++W+ Sbjct: 4 QLSFDLPARAALGRDDFFISPSNRIAVSMIDNWTDWSSQKLLLTGPEGAGKTHLSHVWAR 63 Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL---LDFNDTQLFHIINSIHQYDSSLLMT 143 +S +T D++ + PV +E++ LD T LF++ N + S+L T Sbjct: 64 QSGATIIDATELQDDAVPKLSSGPVAVENVHTIAGLDAQQTALFYLHNLCLETGQSILFT 123 Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203 R P W + LPDL SRL+ A +V+++ PDD L+ V++K+F DRQ+ +L Y+V+ Sbjct: 124 GRGEPQHWLLTLPDLESRLRGAPLVQLNPPDDALLKAVLIKLFGDRQLSPSPELITYVVR 183 Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 R++RS A+KLV +D L+L+ ++R LAA +L+ +Q+ Sbjct: 184 RIDRSFDAAQKLVVALDTLSLAEKRPLSRRLAARLLEPSQE 224 >gi|90419524|ref|ZP_01227434.1| conserved hypothetical protein [Aurantimonas manganoxydans SI85-9A1] gi|90336461|gb|EAS50202.1| conserved hypothetical protein [Aurantimonas manganoxydans SI85-9A1] Length = 230 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 78/199 (39%), Positives = 117/199 (58%), Gaps = 2/199 (1%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 Q+ P ++R+DL++ + AV IDSWP W V+++VGP GSGK+ LAN WS+ Sbjct: 4 QIPLELPHAASLAREDLIMSPSNRLAVEAIDSWPQWRHSVLLIVGPPGSGKTHLANAWSE 63 Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTART 146 ++ +T A D R V+++D D ++ +LF ++N+ SLL+T+R Sbjct: 64 RAGATVARPDATEASLAADDFR--VVVDDADRTALSERELFGLVNAARLGGGSLLLTSRV 121 Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206 P + V DL SRL AAT+ ++ PDD L V++K+FADRQI + + Y+VQRME Sbjct: 122 MPQAMNVATADLRSRLAAATIAELGAPDDPLLTGVLIKLFADRQIAVSPRAVNYLVQRME 181 Query: 207 RSLVFAEKLVDKMDNLALS 225 RSL A LV ++D AL+ Sbjct: 182 RSLDAAGFLVAEIDREALA 200 >gi|254473332|ref|ZP_05086729.1| ATP/GTP-binding protein [Pseudovibrio sp. JE062] gi|211957448|gb|EEA92651.1| ATP/GTP-binding protein [Pseudovibrio sp. JE062] Length = 226 Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 79/216 (36%), Positives = 124/216 (57%), Gaps = 2/216 (0%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 +QL P + DD LV ++ + A L+ +WP WPS +V L GP GSGK+ L N W Sbjct: 8 QQLPLVLPHEEALGVDDYLVSTSNQAAFNLVTNWPEWPSPIVTLQGPIGSGKTHLVNAWQ 67 Query: 86 DKSRSTRFSNIA-KSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTA 144 + S + + LD + PV +ED+ F++ LFH+ N++ ++LMT Sbjct: 68 ELSGAQIVGGDELEYLDLTALAEAGPVAVEDLHA-GFDEASLFHLFNAVRLTGGNMLMTT 126 Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 R +P ++ + DL SR +AAT V++ PDD L V+ K F+DRQ+ +D + Y+V R Sbjct: 127 REWPHTFDLKTKDLASRFRAATPVQVEEPDDMLLAMVMTKHFSDRQVTVDSSVIDYLVIR 186 Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 +ERSL A +VD +D AL+ G I+R +A+++L+ Sbjct: 187 IERSLDAARNVVDMLDRHALATGRKISRVMASKILE 222 >gi|90423831|ref|YP_532201.1| hypothetical protein RPC_2328 [Rhodopseudomonas palustris BisB18] gi|90105845|gb|ABD87882.1| regulatory inactivation of DnaA Hda protein [Rhodopseudomonas palustris BisB18] Length = 225 Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 133/221 (60%), Gaps = 5/221 (2%) Query: 24 KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI 83 + QL + P +SRDD L + +A++LID WP WP+RV++L GP GSGKS L++I Sbjct: 6 QPRQLALALPHAESLSRDDFLEGPSNSEALKLIDHWPDWPNRVMLLTGPEGSGKSHLSSI 65 Query: 84 WSDKSRSTRFSNIAKSLDSILID---TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140 W++++ + + A +L S + +++ED+ ++ LFH++N + + + Sbjct: 66 WAEQAGARAIT--AHALTSSAVPGALATGALVVEDLCPPCIDERALFHLLNLAREDQAYV 123 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L+T+R P + V L DL SRL+A V + PDD +IVK ADRQ+ +D+ L ++ Sbjct: 124 LITSRLPPSALEVDLRDLRSRLRAVPAVTLLPPDDQLFRALIVKFCADRQMSVDESLVSF 183 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + R++RS + A + V+++D AL G +TR+LAAE+ ++ Sbjct: 184 VANRIDRSFIAARQAVERLDTEALRLGRPVTRALAAELFRD 224 >gi|158422563|ref|YP_001523855.1| hypothetical protein AZC_0939 [Azorhizobium caulinodans ORS 571] gi|158329452|dbj|BAF86937.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571] Length = 238 Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 80/226 (35%), Positives = 126/226 (55%), Gaps = 13/226 (5%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 + QL P + R+D L A+RLIDS+P W +RVV LVGP G+GKS LA Sbjct: 6 TRPRQLPLDLPATSAMQREDFLEAPGNAAALRLIDSFPDWTARVVCLVGPPGTGKSHLAA 65 Query: 83 IWSDKSRSTRFS-------NIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ 135 ++++++ + S N+ ++L +++ED++ F + LFH++N + Sbjct: 66 VFAERAGAATVSAVDLTRANVPEALAG------GALVVEDLEPGHFEEAALFHLLNLARE 119 Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195 + +LMTART P W + DL SRL+A I DD L V+VK+F+DRQI +D Sbjct: 120 QQAHVLMTARTAPAHWKLHTADLSSRLRALPTFFIEEADDALLAAVLVKLFSDRQIPVDD 179 Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 Y++ RM+R+ A +V +D AL+ +TR+LAA+VL++ Sbjct: 180 ATVQYLLLRMDRTFEGARSVVQAIDRAALAAQRPVTRALAAQVLRD 225 >gi|319898870|ref|YP_004158963.1| hypothetical protein BARCL_0704 [Bartonella clarridgeiae 73] gi|319402834|emb|CBI76385.1| conserved protein of unknown function [Bartonella clarridgeiae 73] Length = 229 Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 129/224 (57%), Gaps = 9/224 (4%) Query: 24 KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI 83 +E QL F DDL+V + A +LI+ WP+W + IL+G GSGK+ +++ Sbjct: 4 REMQLPLDFSYKSIFQFDDLVVTDSNRMAFQLINHWPNWVPPIAILIGDKGSGKTHFSSV 63 Query: 84 WSDKSRSTRFSNIAKSLDSILID--TRKPVLLEDIDLLDFNDTQLFHIIN-----SIHQY 136 W+ K+ + +D +++ + KP L+E+ID + ++ LFH+IN ++H Sbjct: 64 WAQKANALNI--FYDEIDQFIVEASSGKPFLIENIDSGEIDEIGLFHLINIIKQANLHVN 121 Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196 ++LLMTART P +W + L DL SRL + +V + PDD+ L + K+F+DRQI + Sbjct: 122 HATLLMTARTLPSAWNLKLNDLKSRLNSVMLVALEQPDDELLTAIAFKLFSDRQITVHSD 181 Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + Y++ R ERSL + ++D +D LAL R +TR++ EV+ Sbjct: 182 IIYYLINRCERSLFSLKCIIDSVDRLALQRKSKVTRAIITEVIN 225 >gi|126735140|ref|ZP_01750886.1| hypothetical protein RCCS2_14724 [Roseobacter sp. CCS2] gi|126715695|gb|EBA12560.1| hypothetical protein RCCS2_14724 [Roseobacter sp. CCS2] Length = 219 Score = 145 bits (365), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 79/214 (36%), Positives = 125/214 (58%), Gaps = 3/214 (1%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL F +P + + DD V A QA ++ + +WP + + L+GPSG GKS L+ ++ Sbjct: 4 QLAFDWPTGVALGPDDFFVSDANAQAFAMLSTPEAWPEQKLALIGPSGCGKSHLSRVF-- 61 Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL-DFNDTQLFHIINSIHQYDSSLLMTAR 145 +++S F +A + + V++ED++ L + +FH+ N++ SLL+T+ Sbjct: 62 QAQSDAFLIVASEISATFQTDASTVIIEDMETLPSAAEEAVFHLHNNLRNAGGSLLLTSD 121 Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 P W + LPDL SR++A TVV+I PDD L +I+K+FADRQI L Y+ R+ Sbjct: 122 HPPSRWPITLPDLASRMQATTVVQIDNPDDALLSALIMKLFADRQINPQPALVQYLSTRI 181 Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 ERS A +V ++D AL++G I +SLAAE+L Sbjct: 182 ERSFAAAADIVARLDAAALAQGRKINKSLAAELL 215 >gi|319404186|emb|CBI77779.1| conserved hypothetical protein [Bartonella rochalimae ATCC BAA-1498] Length = 229 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 78/223 (34%), Positives = 129/223 (57%), Gaps = 9/223 (4%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 E QL F DDL++ + A +LI+ WP+W + +L+G GSGK+ +++W Sbjct: 5 ETQLPLDFSHKSVFQFDDLVMTDSNRMAFQLINHWPNWVPPIAVLIGDKGSGKTHFSSVW 64 Query: 85 SDKSRSTRFSNIAKSLDSI--LIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYD----- 137 + K+ + + +D + + + K L+ED+D + ++T LFH+INSI Q + Sbjct: 65 AQKANALNVCH--DEIDQVIAMASSGKSFLIEDVDSGEISETGLFHLINSIKQANLGINQ 122 Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 ++LLMTART P +W + L DL SRL + +V + PDD L + K+F+DRQI + + Sbjct: 123 ATLLMTARTLPSTWNLQLDDLKSRLNSVMLVVLKQPDDALLTAIAFKLFSDRQITVHPSV 182 Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 Y++ ERSL ++++D +D LAL R +TRS+ +EV+ Sbjct: 183 IHYLINHCERSLFSLKRVIDSVDRLALQRKSKVTRSIISEVIN 225 >gi|319407203|emb|CBI80842.1| conserved hypothetical protein [Bartonella sp. 1-1C] Length = 229 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 80/223 (35%), Positives = 128/223 (57%), Gaps = 9/223 (4%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 E QL F DDL++ + A +LI+ WP+W V IL+G GSGK+ +++W Sbjct: 5 ETQLPLDFSHKSVFQFDDLVMTDSNRMAFQLINHWPNWVPPVAILIGDKGSGKTHFSSVW 64 Query: 85 SDKSRSTRFSNIAKSLDSI--LIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYD----- 137 + K+ + + +D + + + K L+ED+D + ++T LFH+INS+ Q + Sbjct: 65 AQKANALNVCH--DEIDQVISMASSGKSFLIEDVDSGEISETGLFHLINSVKQANLGINQ 122 Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 ++LLMTART P +W + L DL SRL + +V I PDD L + K+F+DRQI + + Sbjct: 123 ATLLMTARTLPSTWNLQLNDLKSRLNSVMLVVIKQPDDALLTAIAFKLFSDRQITVHPSV 182 Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 Y++ ERSL + ++D +D LAL R +TRS+ +EV+ Sbjct: 183 IHYLINHCERSLFSLKCVIDSVDRLALQRKSKVTRSIISEVIN 225 >gi|319405633|emb|CBI79256.1| conserved hypothetical protein [Bartonella sp. AR 15-3] Length = 229 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 73/207 (35%), Positives = 124/207 (59%), Gaps = 9/207 (4%) Query: 41 DDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 DDL++ + A +LI+ WP+W + +L+G GSGK+ +++W+ K+ + + + + Sbjct: 21 DDLIMTDSNRMAFQLINHWPNWIPPIAVLIGDKGSGKTHFSSVWAQKANALNICH--EEI 78 Query: 101 DSILI--DTRKPVLLEDIDLLDFNDTQLFHIINSI-----HQYDSSLLMTARTFPVSWGV 153 D ++ + K L+EDID + ++ LFH+INS+ H ++LLMTART P +W + Sbjct: 79 DQVIAIASSGKSFLIEDIDSAEISEIGLFHLINSVKQANLHMNQATLLMTARTLPSTWNL 138 Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213 L DL SRL + +V + PDD L + K+F+DRQI + + Y++ R ERSL + Sbjct: 139 QLNDLKSRLNSVMLVVLKQPDDALLTAIAFKLFSDRQITVHPSVIHYLINRCERSLFSLK 198 Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLK 240 ++D +D LAL R +TR++ +EV+ Sbjct: 199 SIIDSVDQLALQRKSKVTRAIISEVIN 225 >gi|163733468|ref|ZP_02140911.1| hypothetical protein RLO149_17493 [Roseobacter litoralis Och 149] gi|161393256|gb|EDQ17582.1| hypothetical protein RLO149_17493 [Roseobacter litoralis Och 149] Length = 227 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 120/222 (54%), Gaps = 3/222 (1%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 EQL F P + R D LV + AV LI+ W WP R ++L GP+GSGK+ LA++W+ Sbjct: 3 EQLGFDLPGITALGRADFLVAPSNAVAVALIEGWQDWPGRKLVLSGPAGSGKTHLAHVWA 62 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLM 142 S + + I R+ V +ED+ + N +T LFH+ N ++LL Sbjct: 63 ALSGAEICEAQTLAAQDIPELARRSVAIEDVPAIAGNTEAETALFHLHNLALAEGNALLF 122 Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 T P +W + LPDL SR++ + LPDD L V+ K+FADRQ+ L AY++ Sbjct: 123 TGEAAPGAWHLELPDLKSRIEGTQAASLHLPDDALLSAVLAKLFADRQLMPKPDLIAYLI 182 Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 R++RS A ++V +D +L++ ++R LAA VL + Q Sbjct: 183 LRIDRSFAAARRIVAALDAASLAQKRPLSRQLAAAVLDKEDQ 224 >gi|288958155|ref|YP_003448496.1| chromosomal replication initiator [Azospirillum sp. B510] gi|288910463|dbj|BAI71952.1| chromosomal replication initiator [Azospirillum sp. B510] Length = 235 Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 80/209 (38%), Positives = 117/209 (55%), Gaps = 5/209 (2%) Query: 41 DDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAK 98 +D LV + AV +D WPSWP+ + L GP+G GK+ LA +W S + TR + Sbjct: 20 EDFLVAPSNADAVAWLDRWPSWPAPALTLFGPAGCGKTHLAQVWRAHSHALVTRGDALES 79 Query: 99 SLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 + L+ V++ED DL+ + LFH+ N + LL+ +R P W L Sbjct: 80 GVVPSLLAPANAVVVEDADLVAGKPEREEALFHLYNLAREQRGHLLLLSRKAPSRWRTKL 139 Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215 DL SRLK A V++ PDD L V+VK+FADRQ+ ++ Y++ RMERSL FA +L Sbjct: 140 ADLRSRLKGAPAVEVRPPDDALLAAVLVKLFADRQLRPGMEVITYLLARMERSLDFARRL 199 Query: 216 VDKMDNLALSRGMGITRSLAAEVLKETQQ 244 V +D+ +L+ G+T LA EVL + Q+ Sbjct: 200 VAALDHASLAAHRGVTVPLAREVLSDLQR 228 >gi|170746927|ref|YP_001753187.1| chromosomal replication initiator DnaA [Methylobacterium radiotolerans JCM 2831] gi|170653449|gb|ACB22504.1| Chromosomal replication initiator DnaA [Methylobacterium radiotolerans JCM 2831] Length = 236 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 83/227 (36%), Positives = 128/227 (56%), Gaps = 6/227 (2%) Query: 16 QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGS 75 ++N P+ QL F P R+D LV A E A LI++WP WP V++L GPSGS Sbjct: 2 RENAPPR----QLAFDLPLDPRFGREDFLVGPANEAAYALIEAWPDWPDSVLVLTGPSGS 57 Query: 76 GKSCLANIWSDKSRSTRFSNIAKSLDSIL-IDTRKPVLLEDIDLLD-FNDTQLFHIINSI 133 GKS LA IW++++ + D++ + + +++EDID + ++ LFH++N Sbjct: 58 GKSHLAAIWAERAHAWTLPAAELGADAVQHLVSNGALVVEDIDRAERLDEAALFHLLNRA 117 Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193 + +L+T+ T + G+ PDL SRL+ A I PDD L V+VK+F DRQ+ + Sbjct: 118 RERRCPVLLTSATGIDALGLGTPDLRSRLRLAPRSAIEAPDDALLRAVLVKLFVDRQLVV 177 Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 D + + R++RSL A +V ++D AL RG I+R LA VL+ Sbjct: 178 DLGVIDALALRIDRSLGRARDVVAELDRDALGRGRRISRPLALAVLR 224 >gi|254464534|ref|ZP_05077945.1| chromosomal replication initiator, DnaA [Rhodobacterales bacterium Y4I] gi|206685442|gb|EDZ45924.1| chromosomal replication initiator, DnaA [Rhodobacterales bacterium Y4I] Length = 235 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 124/222 (55%), Gaps = 5/222 (2%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 +QL F P + R+D V + AV L+D +WPS ++L GP G+GKS LA++W+ Sbjct: 3 QQLSFDLPAKPALGREDFFVAPSNAMAVALLDPQFAWPSGKLVLTGPKGAGKSHLAHVWA 62 Query: 86 DKSRSTRFSNIAK-SLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLL 141 ++ R AK + ++ P+ +ED+ + + LFH+ N + +L+ Sbjct: 63 SQT-GARIVPAAKLTAGAVPELAHGPIAVEDVPQIAADPERQNALFHLHNLVLAQGHALV 121 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 MT + P WG+ LPDL SR++AAT ++ PDD L V+ K+F DRQI + Y+ Sbjct: 122 MTGQPAPNLWGLSLPDLQSRVQAATHAELQPPDDQLLAVVLAKLFNDRQITPKPDVIPYL 181 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 V M+RS A ++V ++D+L+L+ +TR LA VL E++ Sbjct: 182 VAHMDRSFAAAAQMVRRLDHLSLAEKRSLTRPLAVRVLSESR 223 >gi|146276451|ref|YP_001166610.1| chromosomal replication initiator, DnaA [Rhodobacter sphaeroides ATCC 17025] gi|145554692|gb|ABP69305.1| Chromosomal replication initiator, DnaA [Rhodobacter sphaeroides ATCC 17025] Length = 226 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 82/218 (37%), Positives = 124/218 (56%), Gaps = 6/218 (2%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL F P +SR+D V A A+ +D W WP ++LVGP GSGK+ LA++W+ Sbjct: 4 QLAFDLPMRPALSREDFFVSPANALALASLDGWRDWPRGKMVLVGPRGSGKTHLAHVWAA 63 Query: 87 KS--RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLL 141 ++ R +A++ D + V +ED + L + LFH+ N + + +LL Sbjct: 64 QAEARLIPAEALARA-DLPALAADGAVAVEDAERLGGERAAEEALFHLHNLMLERSGALL 122 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 +TA T P WG+ LPDL SR++AA V ++ PDD L ++VK+FADRQI + L ++ Sbjct: 123 ITADTPPRDWGLVLPDLKSRMQAAAVTRLEAPDDALLSAMLVKLFADRQIAVPGMLVPWL 182 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 V RM+RS A LV +D +L+ I+R +AAE+L Sbjct: 183 VARMDRSCEAARALVAALDARSLAERRPISRQMAAELL 220 >gi|254459628|ref|ZP_05073044.1| chromosomal replication initiator, DnaA [Rhodobacterales bacterium HTCC2083] gi|206676217|gb|EDZ40704.1| chromosomal replication initiator, DnaA [Rhodobacteraceae bacterium HTCC2083] Length = 234 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 73/216 (33%), Positives = 125/216 (57%), Gaps = 3/216 (1%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL F P + RDD + + AV LID+ SW + ++L+GP G+GK+ LA++W+ Sbjct: 4 QLSFDLPSRAALGRDDFFISPSNALAVVLIDTPESWNNGKLLLIGPKGAGKTHLAHVWAA 63 Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMT 143 +S + + + + + + P+++ED+D + + +T LFH+ N +LL+T Sbjct: 64 QSGARIIAANTLTEEDVPNLVQTPLVIEDVDHIAGDRTFETALFHLHNLAQAEGRALLLT 123 Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203 A++ P WG+CLPDL SRL+A + PDD L +++K+FADRQ+ + ++ Sbjct: 124 AKSQPHLWGLCLPDLASRLQAVQSATLEAPDDTLLTALLMKLFADRQLNPAPDVIPFLAL 183 Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R++RS A+++V+ +D AL G ITR+ A+ L Sbjct: 184 RIDRSFAAAQQIVEALDKAALDAGRAITRAFASAAL 219 >gi|110679324|ref|YP_682331.1| hypothetical protein RD1_2043 [Roseobacter denitrificans OCh 114] gi|109455440|gb|ABG31645.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114] Length = 227 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 81/226 (35%), Positives = 124/226 (54%), Gaps = 11/226 (4%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 EQL P + R D LV + AV LI+ W WP R ++L GP+GSGK+ LA++W+ Sbjct: 3 EQLGLDLPGITALGRADFLVAPSNALAVALIEGWQDWPGRKLVLSGPAGSGKTHLAHVWA 62 Query: 86 DKSRSTRFSNIAKSLDSILID----TRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDS 138 S + I + D + D R+ V +ED+ + N +T LFH+ N + Sbjct: 63 ALS----GAEICPARDLVGQDIPDLARRSVAIEDVPDIAGNAQAETALFHLHNLALAEGN 118 Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198 +LL T P +W + LPDL SR++ V + LPDD L V+ K+FADRQ+ +L Sbjct: 119 ALLFTGEAAPRAWHLNLPDLKSRIEGTQAVSLDLPDDALLSAVLAKLFADRQLTPKPELI 178 Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 AY++ R++RS A ++V +D +L++ ++R LAA VL + Q Sbjct: 179 AYLILRIDRSFAAARRIVAALDAASLAQKRPLSRQLAAAVLDKEDQ 224 >gi|259416785|ref|ZP_05740705.1| chromosomal replication initiator, DnaA [Silicibacter sp. TrichCH4B] gi|259348224|gb|EEW60001.1| chromosomal replication initiator, DnaA [Silicibacter sp. TrichCH4B] Length = 225 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 120/222 (54%), Gaps = 3/222 (1%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 EQL F P + RDD V + AV LID +WPS ++L GP GSGK+ LA++W+ Sbjct: 3 EQLSFDLPAKPALGRDDFFVAPSNAMAVALIDPAFAWPSGKLVLTGPKGSGKTHLAHVWA 62 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLM 142 +S + A + + PV +ED+ + + LFH+ N + + L++ Sbjct: 63 KESGARVVPARALTEADVPDLASGPVAIEDVPAIAEDARAQKALFHLHNMVLTHGHRLML 122 Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 T R P WG+ L DL SR++AAT + PDD L V+ K+F DRQI + Y+V Sbjct: 123 TGRPAPNLWGLGLADLQSRVQAATHAALEAPDDALLAVVLAKLFNDRQITPKPDVIPYLV 182 Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 RM+RS A +VD++D LAL+ ++R+LA ++ Q+ Sbjct: 183 GRMDRSFAAAAAVVDQLDRLALAEQRTLSRALAIRMMSSDQE 224 >gi|86138527|ref|ZP_01057100.1| hypothetical protein MED193_21806 [Roseobacter sp. MED193] gi|85824587|gb|EAQ44789.1| hypothetical protein MED193_21806 [Roseobacter sp. MED193] Length = 225 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 75/219 (34%), Positives = 119/219 (54%), Gaps = 3/219 (1%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 +QL F P + RDD V + AV L+D WPS ++L GP+GSGK+ LA++W+ Sbjct: 3 QQLSFDLPAKTALGRDDFFVAPSNAMAVALLDPSFHWPSGKLVLTGPTGSGKTHLAHVWA 62 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLM 142 ++ + D + + PV++ED+ + N LFH+ N + +L++ Sbjct: 63 SQTGAKILQACDLKEDRVPELAQAPVVVEDVPAIAGNPEAQNALFHLHNLVLSNGHALML 122 Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 T R P W + L DL SR++AAT ++ PDD L V+ K+F DRQ+ + Y+V Sbjct: 123 TGRAAPNLWQLSLADLQSRMQAATHAELQAPDDALLAVVLAKLFNDRQVTPKADVIPYLV 182 Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 M+RS A +V ++DNLALS G ++R LA ++ + Sbjct: 183 AHMDRSFAAAAVIVKQLDNLALSEGRTLSRPLAVRLMSQ 221 >gi|149914374|ref|ZP_01902905.1| prolyl-tRNA synthetase [Roseobacter sp. AzwK-3b] gi|149811893|gb|EDM71726.1| prolyl-tRNA synthetase [Roseobacter sp. AzwK-3b] Length = 222 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 79/217 (36%), Positives = 118/217 (54%), Gaps = 3/217 (1%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 EQL F P + RDD V A +AV LI+ W WPSR ++LVGP GSGK+ LA++W+ Sbjct: 4 EQLSFDLPVREALGRDDFFVSPANAEAVALIEGWRGWPSRKLLLVGPPGSGKTHLAHVWA 63 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLM 142 + + + A + I + +ED D + + + LFH+ N ++L Sbjct: 64 TLADARIIAAHALTRADIPALATGHIAVEDCDDIARDAAAEEALFHLHNLALAEGHTVLF 123 Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 TA P WG+ LPDL SR++ + PDD L V++K+ DRQ+ + Y+ Sbjct: 124 TAARAPQHWGLSLPDLASRMQGTPATILHEPDDTLLAAVLMKLMTDRQLSPSPETIPYLT 183 Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 +R++RS A +VD +D LAL+ G I R+LAA+VL Sbjct: 184 RRIDRSFEAARDVVDALDALALATGRPINRALAAKVL 220 >gi|85703787|ref|ZP_01034891.1| hypothetical protein ROS217_23637 [Roseovarius sp. 217] gi|85672715|gb|EAQ27572.1| hypothetical protein ROS217_23637 [Roseovarius sp. 217] Length = 224 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 78/217 (35%), Positives = 118/217 (54%), Gaps = 3/217 (1%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 QL F P + R+D V A +AV +IDSW +WPSR +IL GP+GSGK+ LA++W+ Sbjct: 4 HQLSFDLPVRPALGREDFFVSPANAEAVAMIDSWETWPSRKLILAGPTGSGKTHLAHVWA 63 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLM 142 S + + + I P+ +ED + N + LFH+ N ++L+ Sbjct: 64 ALSGARIIAAADLADADIPALALSPLAIEDAEQTAGNRAAEEALFHLHNLSLAEGHTILL 123 Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 TA P W + LPDL SR++ V ++ PDD L V+ K+FADRQI Y+ Sbjct: 124 TAERPPHLWPLRLPDLMSRMQGTLVTQLRAPDDALLAAVLTKLFADRQIAPSPDTVPYLS 183 Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 +R++RS ++V+ +D AL+ ITR+ AA+VL Sbjct: 184 RRIDRSFAAVREVVETLDAAALAERRAITRAFAAQVL 220 >gi|299133727|ref|ZP_07026921.1| chromosomal replication initiator, DnaA [Afipia sp. 1NLS2] gi|298591563|gb|EFI51764.1| chromosomal replication initiator, DnaA [Afipia sp. 1NLS2] Length = 229 Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 78/220 (35%), Positives = 122/220 (55%), Gaps = 1/220 (0%) Query: 22 KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 + QL P +SRDD L + QA+ L++ WP W +RV++LVGP G GKS LA Sbjct: 3 RTPPRQLALELPHAESLSRDDYLEGPSNVQALGLVERWPDWSNRVMMLVGPEGCGKSHLA 62 Query: 82 NIWSDKSRSTRFSNIA-KSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140 IW+ S + A S D +++E ++ F++ +FH++N + ++ + Sbjct: 63 AIWAAISGARIVGAHALTSADVPASLATGALVVEHLEPGHFDERAIFHLLNLARETNAFV 122 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 LMTAR P S+ + L D SRL+A VV + PDD L ++VK ADRQ+ +D+ + Y Sbjct: 123 LMTARMAPASFEIELRDAGSRLRAIPVVTVEPPDDQLLRALLVKFCADRQMAVDEGVVGY 182 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + +ERS A + V+ +D AL + ITR+LAA + + Sbjct: 183 LATHIERSFAAARQAVELLDAEALRQRRPITRALAATLFR 222 >gi|99081697|ref|YP_613851.1| chromosomal replication initiator, DnaA [Ruegeria sp. TM1040] gi|99037977|gb|ABF64589.1| Chromosomal replication initiator DnaA [Ruegeria sp. TM1040] Length = 225 Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 121/222 (54%), Gaps = 3/222 (1%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 EQL F P + RDD V + AV LID +WPS ++L GP GSGK+ LA++W+ Sbjct: 3 EQLSFDLPAKPALGRDDFFVAPSNAMAVALIDPAFAWPSGKLVLTGPKGSGKTHLAHVWA 62 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI-DLLD--FNDTQLFHIINSIHQYDSSLLM 142 +S + A + + PV +ED+ D+ + LFH+ N + + L++ Sbjct: 63 KESGARVVPAHALTEADVPELASGPVAIEDVPDIAEDALAQKALFHLHNMVLTHGHRLML 122 Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 T R P WG+ L DL SR++AAT + PDD L V+ K+F DRQI + Y+V Sbjct: 123 TGRPAPNLWGLGLADLQSRVQAATHAALEAPDDALLAVVLAKLFNDRQITPKPDVIPYLV 182 Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 RM+RS A +V+++D LAL+ ++R+LA ++ Q+ Sbjct: 183 GRMDRSFAAAAAVVEQLDRLALAEQRTLSRALAIRLMSSDQK 224 >gi|114764028|ref|ZP_01443269.1| hypothetical protein 1100011001340_R2601_19280 [Pelagibaca bermudensis HTCC2601] gi|114543620|gb|EAU46634.1| hypothetical protein R2601_19280 [Roseovarius sp. HTCC2601] Length = 233 Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 77/217 (35%), Positives = 115/217 (52%), Gaps = 3/217 (1%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 +QL P + R+D V + AV L+D+W SWP+ ++LVGPSG+GK+ LA++W+ Sbjct: 5 DQLPLPLPVRAALGREDYFVGQSNGLAVALLDNWQSWPNGKMVLVGPSGAGKTHLAHVWA 64 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLM 142 ++ + + I P+ +ED D + + + LFH+ N LL+ Sbjct: 65 AETGAAIVPAASLPQADIPAHATAPICVEDGDRIAGDRPAEEALFHLHNLALAQRQPLLV 124 Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 TAR+ P W + +PDL SR++ + PDD L VI KM ADRQ + Y+V Sbjct: 125 TARSAPSLWPLVIPDLKSRMEGTQTATLPDPDDTLLAAVIAKMLADRQCVPAADVIPYLV 184 Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + M RS A LV +D A+ R GITRSLA ++L Sbjct: 185 RHMPRSFAMARALVTALDANAMGRPKGITRSLARDIL 221 >gi|126725675|ref|ZP_01741517.1| hypothetical protein RB2150_05703 [Rhodobacterales bacterium HTCC2150] gi|126704879|gb|EBA03970.1| hypothetical protein RB2150_05703 [Rhodobacterales bacterium HTCC2150] Length = 226 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 80/216 (37%), Positives = 119/216 (55%), Gaps = 2/216 (0%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 EQL F P + R D + + + AV +++ W WP R VIL G +GSGKS LA IW+ Sbjct: 3 EQLIFDLPVKQALGRADFFISPSNQHAVAMLEGWRDWPERKVILTGAAGSGKSHLAQIWA 62 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLEDID--LLDFNDTQLFHIINSIHQYDSSLLMT 143 D+ + L + +++ED D L +T LFH+ N + L++T Sbjct: 63 DEVGARIVPATEVPLLMMEELDGSSIIVEDADQPLEMAAETGLFHLHNLVLASGGYLMVT 122 Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203 A+T P WG+ L DL SR+ A + PD+ L+ V++K F D Q+ KL Y+++ Sbjct: 123 AKTPPSQWGLKLADLNSRMLATPQAALLAPDEGLLQAVLMKHFDDHQLSATPKLLTYMLK 182 Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 RM RSL A ++VD+MD LALS+ ++ LA+EVL Sbjct: 183 RMTRSLSAAREIVDEMDRLALSQKRKLSIELASEVL 218 >gi|220925387|ref|YP_002500689.1| Chromosomal replication initiator DnaA [Methylobacterium nodulans ORS 2060] gi|219949994|gb|ACL60386.1| Chromosomal replication initiator DnaA [Methylobacterium nodulans ORS 2060] Length = 233 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 80/216 (37%), Positives = 116/216 (53%), Gaps = 4/216 (1%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL P +D LV + E A I+SWP WP V++L GPSGSGKS LA +W+ Sbjct: 7 QLTLDLPLDPRFGPEDFLVGPSNEAAYARIESWPHWPDPVLVLTGPSGSGKSHLAAVWAA 66 Query: 87 KSRSTRFSNIAKSLDSIL--IDTRKPVLLEDIDLLDFND-TQLFHIINSIHQYDSSLLMT 143 +S R IA+ + + + +++ED D D LFH++N + +SL++T Sbjct: 67 QS-GARTVGIAEVTGAAVPQLAEHPALVIEDADRRSGRDEAALFHLLNLARERGTSLVIT 125 Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203 WG+ PDL SRL+ A V I+ PD+ L V+VK+F DRQ+ +D + + Sbjct: 126 GAGAVEGWGIATPDLRSRLRLAPTVAIAPPDEALLRAVLVKLFVDRQLVVDTSVVDALAL 185 Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R++RSL A +V +D L+RG ITR LA L Sbjct: 186 RIDRSLGRARDVVAALDREGLARGRRITRPLALATL 221 >gi|154253765|ref|YP_001414589.1| chromosomal replication initiator DnaA [Parvibaculum lavamentivorans DS-1] gi|154157715|gb|ABS64932.1| Chromosomal replication initiator DnaA [Parvibaculum lavamentivorans DS-1] Length = 226 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 83/216 (38%), Positives = 120/216 (55%), Gaps = 4/216 (1%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL F R+D LV E AV LID+WP WP RVV L GP GSGK+ LA +W + Sbjct: 4 QLAFELGHRPAFGREDFLVAPPNEAAVALIDAWPDWPDRVVALSGPEGSGKTHLAEVWRN 63 Query: 87 KSRSTRF--SNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ-LFHIINSIHQYDSSLLMT 143 + + S +A + L+ R ++LED+ D + LFH++N + + + LL+T Sbjct: 64 AAGAVSLAPSALAGADVPALVAART-IILEDLAAPDAAAERALFHLVNLVREEGAFLLIT 122 Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203 AR + LPDL SRLKA ++ PDD L ++VK+F DRQ+ + + A++ Sbjct: 123 ARVPLSRLPLALPDLASRLKAVPQAELGPPDDALLAGILVKLFDDRQLRVAPAVIAWLAA 182 Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R+ERS+ A V ++D +LS IT LAAE+L Sbjct: 183 RIERSVRAARDAVAELDRASLSGKRPITVPLAAEIL 218 >gi|294676368|ref|YP_003576983.1| DnaA-like protein Hda [Rhodobacter capsulatus SB 1003] gi|294475188|gb|ADE84576.1| DnaA-like protein Hda [Rhodobacter capsulatus SB 1003] Length = 225 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 83/221 (37%), Positives = 122/221 (55%), Gaps = 4/221 (1%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW-S 85 QL P + R+D V A A+ L+D+ +W ++L+GP G+GKS LA IW S Sbjct: 4 QLPLPLPVRVAEGREDFFVAPANALALSLLDAPETWAQGRMLLLGPEGAGKSHLAAIWAS 63 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD---FNDTQLFHIINSIHQYDSSLLM 142 ++ R + + + V++ED L ++ LFH++N L+ Sbjct: 64 ERGAVIRPAADLRPETVADLAATGAVVIEDAQHLAGRAASEQALFHLLNLTAAEGGRCLI 123 Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 TA T P WGV LPDL SRL A V+I+ PD+ L V+VK+FADRQ+ + + L ++V Sbjct: 124 TAPTPPRDWGVALPDLKSRLDATQSVRIAPPDEALLAAVLVKLFADRQLTVPQSLIDWLV 183 Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 RMER+L A +V+ +D AL+ G ITR++AAEVL Q Sbjct: 184 LRMERALGTARAVVEALDARALAEGRAITRAMAAEVLDRLQ 224 >gi|126463196|ref|YP_001044310.1| chromosomal replication initiator, DnaA [Rhodobacter sphaeroides ATCC 17029] gi|126104860|gb|ABN77538.1| Chromosomal replication initiator, DnaA [Rhodobacter sphaeroides ATCC 17029] Length = 226 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 125/221 (56%), Gaps = 6/221 (2%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL F P +SR+D + A A+ +D W WP ++LVGP GSGK+ LA+IW+ Sbjct: 4 QLAFDLPIRPALSREDFFISPANALALASLDGWRDWPRGKMVLVGPRGSGKTHLAHIWAA 63 Query: 87 KS--RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLL 141 ++ R +A++ D + V +ED + L + + LFH+ N + + +LL Sbjct: 64 QAEARLIPAEALARA-DLPALAADGAVAVEDAERLGGDRAAEEALFHLHNLMLERAGALL 122 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 +TA P WG+ LPDL SR++AA+V ++ PDD L ++VK+F DRQI + L ++ Sbjct: 123 ITAAGPPRDWGLGLPDLKSRMQAASVTRLEAPDDALLSAMLVKLFTDRQIAVPGMLVPWL 182 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 V RM+RS A LV +D +L+ I+R +AAE+L T Sbjct: 183 VARMDRSCEAARALVAALDARSLAERRPISRQMAAELLGLT 223 >gi|260426335|ref|ZP_05780314.1| chromosomal replication initiator, DnaA [Citreicella sp. SE45] gi|260420827|gb|EEX14078.1| chromosomal replication initiator, DnaA [Citreicella sp. SE45] Length = 233 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 76/219 (34%), Positives = 120/219 (54%), Gaps = 7/219 (3%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 +QL P + R+D V + AV L+D W +WP+R ++LVGP G+GK+ LA++W+ Sbjct: 5 DQLPLPLPVRPALGREDYFVSRSNGLAVALMDDWRNWPNRKLVLVGPHGAGKTHLAHVWA 64 Query: 86 DKSRSTRFSNIAKSLDSILIDT--RKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSL 140 ++ + AK L++ I P+ +ED+ + + + LFH+ N L Sbjct: 65 AETGAVIVP--AKGLETADIPALANGPLCVEDVPAIAGDRPAEEALFHLHNLTLAQGQPL 122 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 ++TA+T P W + +PDL SR++ + PDD L V+ K+ ADRQ + Y Sbjct: 123 MVTAQTPPALWPLVIPDLKSRMEGTQTATLPNPDDTLLSAVLAKLLADRQCVPAPDVIPY 182 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 +V+ M RS A +LV +D A++R GITR+LA EVL Sbjct: 183 LVRHMPRSFAMARELVSALDAHAMTRPKGITRALAREVL 221 >gi|126739191|ref|ZP_01754885.1| hypothetical protein RSK20926_22364 [Roseobacter sp. SK209-2-6] gi|126719808|gb|EBA16516.1| hypothetical protein RSK20926_22364 [Roseobacter sp. SK209-2-6] Length = 235 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 79/217 (36%), Positives = 122/217 (56%), Gaps = 11/217 (5%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 +QL F P + RDD V + AV L+D +WPS ++L GP+GSGKS LA++W+ Sbjct: 3 KQLSFDLPAKPALGRDDFFVAPSNAMAVALLDPSFAWPSGKLVLTGPAGSGKSHLAHVWA 62 Query: 86 DKSRSTRFSNIAKSLD---SILID-TRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDS 138 +S + NI ++ D ++ D + V++ED+ + LFH+ N + Sbjct: 63 SQSGA----NILQAADIHEELVPDFAQGSVVIEDVPRIAGDQVAQNALFHLHNLVLANGH 118 Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198 +L++T R P W + LPDL SR++AAT ++ PDD L V+ K+F DRQ+ + Sbjct: 119 ALMLTGRAAPNLWQLTLPDLQSRVQAATHAELQPPDDALLSVVLAKLFNDRQVTPKPDVI 178 Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235 Y+V M+RS A +VD++D LALS G ++R LA Sbjct: 179 PYLVAHMDRSFAAAADIVDQLDRLALSEGRTLSRPLA 215 >gi|84686213|ref|ZP_01014108.1| hypothetical protein 1099457000256_RB2654_08417 [Maritimibacter alkaliphilus HTCC2654] gi|84665740|gb|EAQ12215.1| hypothetical protein RB2654_08417 [Rhodobacterales bacterium HTCC2654] Length = 227 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 75/218 (34%), Positives = 118/218 (54%), Gaps = 5/218 (2%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 QL F P R D + + A+ ++ W WPS ++L GP GSGKS L +W+ Sbjct: 3 HQLTFDLPVRTSRDRGDFFIADSNAVALAAVERWKDWPSAKMVLTGPDGSGKSHLVEVWA 62 Query: 86 DKSRSTRF-SNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLL 141 + + + +LD+ + R V +ED D + + LFH+ N + SLL Sbjct: 63 TLTGAEIVPAGTLATLDTAALAGRS-VAVEDADRVAGQPEAEAALFHLHNLVLAEGGSLL 121 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 +T+R P WG+ LPDL SR++ ++V + PD+ + V+VK+F DRQI + L AY+ Sbjct: 122 LTSRAAPTRWGLDLPDLASRMEGTSMVALETPDEALISAVLVKLFDDRQIAVSPNLVAYL 181 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R+ RSL A V ++D++AL+ +TR+LAA +L Sbjct: 182 APRLPRSLAAARDFVARLDDVALAEKRDVTRALAARLL 219 >gi|149202229|ref|ZP_01879202.1| Chromosomal replication initiator, DnaA [Roseovarius sp. TM1035] gi|149144327|gb|EDM32358.1| Chromosomal replication initiator, DnaA [Roseovarius sp. TM1035] Length = 225 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 79/216 (36%), Positives = 120/216 (55%), Gaps = 3/216 (1%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL F P + R+ V A +AV +I+ W WP R +IL GPSG+GK+ LA++W+ Sbjct: 5 QLSFDLPVRAALGREVFFVSPANAEAVAMIEGWQGWPGRKLILAGPSGAGKTHLAHVWAA 64 Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMT 143 S + + + I +P+++ED D + + + LFH+ N + SLL+T Sbjct: 65 LSGAQMIAAKHIAQADIPNFASRPIVVEDADQIARDRPSEEALFHLHNLVLAEGHSLLLT 124 Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203 AR P W + LPDL SR++ + ++ PDD L V+ K+FADRQI Y+ + Sbjct: 125 ARQPPNLWPLVLPDLQSRMQGTMLTQLRAPDDTLLAAVLTKLFADRQIAPSPDTIPYLAR 184 Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 RM+RS A ++V +D AL+ G ITR LA++VL Sbjct: 185 RMDRSFDAAREVVAALDAAALAEGRAITRVLASQVL 220 >gi|298291115|ref|YP_003693054.1| chromosomal replication initiator, DnaA [Starkeya novella DSM 506] gi|296927626|gb|ADH88435.1| chromosomal replication initiator, DnaA [Starkeya novella DSM 506] Length = 241 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 83/217 (38%), Positives = 124/217 (57%), Gaps = 3/217 (1%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL P +RDD L A E A+ LID+WP WPSR+V LVGP GSGKS LA I++ Sbjct: 5 QLPLDLPHADSRTRDDFLPGPANEGALALIDAWPDWPSRLVALVGPEGSGKSHLAAIFAA 64 Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLL-EDIDLLDFNDTQLFHIINSIHQYDSSLLMTAR 145 ++ + A ++ L+ ED+ + LFH++N + + +L+TAR Sbjct: 65 ETGAQVVPAAALDAAAVPALLASGALVVEDLGEGPVPEAALFHLMNLAGEQRAHVLVTAR 124 Query: 146 TFPVSWGVCLP--DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203 P + + DL SRL+A VV + PD++ L V VK+FADRQI D+ L Y++ Sbjct: 125 RAPAALAEAIATRDLASRLRAMPVVSLGAPDEELLAAVAVKLFADRQIVPDEALLNYLLP 184 Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 R+ERS+ +V ++D AL+R +TR+LA+E+L+ Sbjct: 185 RVERSIAGLRDIVGELDREALARKRPLTRALASELLR 221 >gi|197105152|ref|YP_002130529.1| DnaA-related protein [Phenylobacterium zucineum HLK1] gi|196478572|gb|ACG78100.1| DnaA-related protein [Phenylobacterium zucineum HLK1] Length = 273 Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 86/222 (38%), Positives = 118/222 (53%), Gaps = 12/222 (5%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL R SRD+ V + QAV L+D+WP+W R + LVGP GSGK+ LA W+ Sbjct: 54 QLRLRLGRPAAYSRDEFAVGPSNAQAVALLDAWPAWHGRALALVGPEGSGKTHLARAWAQ 113 Query: 87 KSRSTRFSNIAKSLDSILIDTR----KPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLM 142 + + LD D R +P LLED+D LFH+IN + LL+ Sbjct: 114 AAGAV-------VLDREDPDLRQADGRPALLEDVDQ-GVPGEALFHLINLAAREGGGLLL 165 Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 TART P +W LPDL SRL A V +I PDD LE V+ K F DR I +++ Y++ Sbjct: 166 TARTRPAAWPAALPDLRSRLNALAVAEIEPPDDAVLEGVLRKFFRDRNIRPPEEVYPYLL 225 Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 +RM RS+ A ++V K+D +TR LA ++L+ Q Sbjct: 226 RRMGRSIPDAREIVRKLDEAGDGELKPVTRVLARQILEGDSQ 267 >gi|163745973|ref|ZP_02153332.1| hypothetical protein OIHEL45_10313 [Oceanibulbus indolifex HEL-45] gi|161380718|gb|EDQ05128.1| hypothetical protein OIHEL45_10313 [Oceanibulbus indolifex HEL-45] Length = 226 Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 79/217 (36%), Positives = 119/217 (54%), Gaps = 3/217 (1%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 QL + P + RD V + A+ +ID W W + L GP GSGK+ L ++W+ Sbjct: 3 HQLGLNLPSRTALGRDAFFVAPSNAMAMAMIDGWRGWAGGKLALTGPQGSGKTHLTHVWA 62 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLM 142 D S + S A I R PV +ED+ + D T+LFH+ N + +LL+ Sbjct: 63 DLSGAQIISASALQTADIPALARGPVAVEDVHQIAQDDAAQTELFHLHNLVLAEGQALLL 122 Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 T WG+ LPDL SR++ AT V++ PDD L ++VK+ ADRQ+ +L Y++ Sbjct: 123 TGTGVVAHWGLTLPDLVSRMRGATAVEMDAPDDALLSALLVKLLADRQLTPKPELINYLM 182 Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 RM+RS A LVD++D +L++ +TR+LAA+VL Sbjct: 183 TRMDRSFAAAIALVDRLDAASLAQKRPLTRALAAQVL 219 >gi|254487899|ref|ZP_05101104.1| chromosomal replication initiator, DnaA [Roseobacter sp. GAI101] gi|214044768|gb|EEB85406.1| chromosomal replication initiator, DnaA [Roseobacter sp. GAI101] Length = 223 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 119/221 (53%), Gaps = 11/221 (4%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 +QL + P + RDD V + A +ID W +W R + L GP GSGK+ L ++W+ Sbjct: 3 QQLGLALPSRAALGRDDFFVAPSNAIAAAMIDGWRTWAGRKLALTGPPGSGKTHLTHVWA 62 Query: 86 DKSRSTRFSNIAKSLDSILID----TRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDS 138 +S + I ++ D + D R V +ED+ L+ + T LFH+ N + Sbjct: 63 TQS----GARIIQARDLLRADIPDLARSCVAVEDVPLIARHPEAQTALFHLHNLVLAEGH 118 Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198 SLL+T W + LPDL SR++AA V + PDD L V+ K+ ADRQ+ L Sbjct: 119 SLLLTGAPAVAQWRLTLPDLASRMQAAGAVALEAPDDMLLTAVLAKLLADRQLTPRPDLI 178 Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 Y++ RM+RS A LV ++D +L++ +TRSLAA+VL Sbjct: 179 PYLLPRMDRSFAAAGDLVARLDAASLAQKKPVTRSLAAQVL 219 >gi|154247057|ref|YP_001418015.1| chromosomal replication initiator, DnaA [Xanthobacter autotrophicus Py2] gi|154161142|gb|ABS68358.1| chromosomal replication initiator, DnaA [Xanthobacter autotrophicus Py2] Length = 244 Score = 134 bits (338), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 88/228 (38%), Positives = 138/228 (60%), Gaps = 17/228 (7%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 + QL P + R+D L A+ LID++P WP+RVV +VGP G+GKS L+ Sbjct: 6 GRPRQLPLDLPAYPALRREDFLAAPGNAAALALIDAFPEWPARVVCIVGPEGAGKSHLSA 65 Query: 83 IWSDKSRSTRFSNIAKSLDSILIDTRKPV---------LLEDIDLLDFNDTQLFHIINSI 133 I++++S A++LD+ + TR+ V +LED+ F++ LFH++N Sbjct: 66 IFAERSG-------ARTLDARAL-TREGVPEALASGALVLEDLSAGTFSEAALFHLLNLA 117 Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193 + + LLMTART P S+ + DL SRL+A V +I+ DD L V+VK+FADRQ+ + Sbjct: 118 REQQAYLLMTARTPPSSFSLATADLASRLRAVPVFEIAPADDALLAAVLVKLFADRQLSV 177 Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 D+ Y++ RM+R++ A+++VD +D AL+ +TR+LAA+VLKE Sbjct: 178 DEATVQYLLMRMQRTVAGAKRIVDALDTAALAARRPVTRALAAQVLKE 225 >gi|159043293|ref|YP_001532087.1| chromosomal replication initiator [Dinoroseobacter shibae DFL 12] gi|157911053|gb|ABV92486.1| chromosomal replication initiator [Dinoroseobacter shibae DFL 12] Length = 229 Score = 134 bits (338), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 122/221 (55%), Gaps = 5/221 (2%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 + +QL F P + R D + +A+ ID+WP WP+ ++L GP SGK+ LA Sbjct: 2 SAPQQLAFPLPAWPALGRADFIAAPCNAEALARIDAWPDWPAPRLVLCGPPASGKTHLAQ 61 Query: 83 IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID-LLDFNDTQ--LFHIINSIH-QYDS 138 IW+ K+R+ +LD ++ + V +ED D L + Q LFH+ N + + + Sbjct: 62 IWAAKARAEILPARLLTLD-MVAELPAQVAIEDADQLFGMGEAQEALFHLHNRLAAEAEG 120 Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198 +LL+T P W + LPDL SRL+A + ++S PDD L ++ K+F DRQI L Sbjct: 121 ALLITGAAPPARWSIALPDLASRLQAMPLAQLSAPDDALLGALLAKLFEDRQIAPPPNLI 180 Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 +++ RMERS A +V ++D+ ALS I +LAAE+L Sbjct: 181 PFLLIRMERSFAAARAVVAELDHRALSERRAIGTALAAEIL 221 >gi|254476295|ref|ZP_05089681.1| chromosomal replication initiator, DnaA [Ruegeria sp. R11] gi|214030538|gb|EEB71373.1| chromosomal replication initiator, DnaA [Ruegeria sp. R11] Length = 271 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 121/222 (54%), Gaps = 3/222 (1%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 +QL F P + RDD V + AV ++D +WP ++L GP SGK+ L ++W+ Sbjct: 3 QQLSFDLPAKPALGRDDFFVAPSNAMAVAMLDPSFAWPGGKLVLSGPKRSGKTHLVHVWA 62 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI-DLLDFNDTQ--LFHIINSIHQYDSSLLM 142 S + + ++ P+ +ED+ D+ D + Q LFH+ N + +L++ Sbjct: 63 SNSGAQILPAWQLTKAAVPQLAEGPIAIEDVPDIADNTEAQDALFHLHNLVLANGHALML 122 Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 T R P WG+ LPDL SR++ A ++ PDD L V+ K+F DRQI + Y+V Sbjct: 123 TGRAAPRLWGMSLPDLQSRIEGAPHAQLQPPDDALLSVVLAKLFNDRQITPKPDVIPYLV 182 Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 M+RS A ++V+++D L+L+ G ++R+LA +++ + Q Sbjct: 183 AHMDRSFAAASQIVEELDQLSLAEGRMVSRALAVQLMSDRPQ 224 >gi|77464354|ref|YP_353858.1| hypothetical protein RSP_0780 [Rhodobacter sphaeroides 2.4.1] gi|332559245|ref|ZP_08413567.1| hypothetical protein RSWS8N_09320 [Rhodobacter sphaeroides WS8N] gi|77388772|gb|ABA79957.1| hypothetical protein with ATP/GTP-binding site [Rhodobacter sphaeroides 2.4.1] gi|332276957|gb|EGJ22272.1| hypothetical protein RSWS8N_09320 [Rhodobacter sphaeroides WS8N] Length = 226 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 124/221 (56%), Gaps = 6/221 (2%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL F P +SR+D + A A+ +D W WP ++LVGP GSGK+ LA+IW+ Sbjct: 4 QLAFDLPIRPALSREDFFISPANALALASLDGWRDWPRGKMVLVGPRGSGKTHLAHIWAA 63 Query: 87 KS--RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLL 141 ++ R +A++ D + V +ED + L + + LFH+ N + + +LL Sbjct: 64 QAEARLIPAEALARA-DLPALAADGAVAVEDAERLGGDRAAEEALFHLHNLMLERAGALL 122 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 +TA P WG+ L DL SR++AA+V ++ PDD L ++VK+F DRQI + L ++ Sbjct: 123 ITAAGPPRDWGLGLADLKSRMQAASVTRLEAPDDALLSAMLVKLFTDRQIAVPGMLVPWL 182 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 V RM+RS A LV +D +L+ I+R +AAE+L T Sbjct: 183 VARMDRSCEAARALVAALDARSLAERRPISRQMAAELLGLT 223 >gi|83593498|ref|YP_427250.1| regulatory inactivation of DnaA Hda protein [Rhodospirillum rubrum ATCC 11170] gi|83576412|gb|ABC22963.1| regulatory inactivation of DnaA Hda protein [Rhodospirillum rubrum ATCC 11170] Length = 228 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 116/222 (52%), Gaps = 2/222 (0%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL P + R+ LV + AV L+++WP WP+ + GP+G+GK+ LA +++ Sbjct: 6 QLPLDLPWRPALGREHFLVAACNASAVALVEAWPHWPAPAACIHGPTGAGKTHLAQVFAT 65 Query: 87 KSRSTRF--SNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTA 144 ++ + + I + L + + ++ED D + LFH++N+ Q SLL+TA Sbjct: 66 RAAAVVLDPAVILGTDPLTLFEGGRAAVIEDADRAGLPEATLFHLLNAARQRGGSLLLTA 125 Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 + P WGV L DL SRL A + PDD+ + V++K+F+DR + + Y++ R Sbjct: 126 LSPPARWGVHLADLRSRLAALPAEGLCEPDDELMAAVLLKLFSDRGLDVAPGAIGYLLPR 185 Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 MERS A LV D LAL G +T L ++L + D Sbjct: 186 MERSFAAARDLVVHADALALREGRAVTVPLLRQLLATPDRAD 227 >gi|296446895|ref|ZP_06888831.1| Chromosomal replication initiator DnaA [Methylosinus trichosporium OB3b] gi|296255570|gb|EFH02661.1| Chromosomal replication initiator DnaA [Methylosinus trichosporium OB3b] Length = 232 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 73/199 (36%), Positives = 116/199 (58%), Gaps = 4/199 (2%) Query: 44 LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI 103 LV A +I WP WP ++L+GP+G+GKS L I++ +S + F + + + Sbjct: 31 LVSPCNRAAFEMISRWPDWPDPALLLLGPAGAGKSHLCAIFAQRSDAL-FVDPSDLMTPQ 89 Query: 104 LIDTRKP--VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161 + P +++ +D ++ ++T LFH++N + + +SLL+ R P V LPDL SR Sbjct: 90 RLAASPPRAAIVDGLDAVE-DETALFHLMNFLRESGASLLLCGRRPPSGETVALPDLLSR 148 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 L+ A VV+I PDDD + V+ K+ DRQ+ +D L Y+ R+ERSL A V +D Sbjct: 149 LRRAPVVEIGAPDDDLIRAVLEKLLRDRQLLVDPGLVDYLALRLERSLDAARAFVRLLDE 208 Query: 222 LALSRGMGITRSLAAEVLK 240 AL+RG +TR+LA E+L+ Sbjct: 209 EALARGRRVTRALAGELLE 227 >gi|83949532|ref|ZP_00958265.1| hypothetical protein ISM_00520 [Roseovarius nubinhibens ISM] gi|83837431|gb|EAP76727.1| hypothetical protein ISM_00520 [Roseovarius nubinhibens ISM] Length = 224 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 84/223 (37%), Positives = 123/223 (55%), Gaps = 7/223 (3%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 +QL F P + RDD V ++ AV +I++W SWP+R ++L GPSG+GK+ LA++W+ Sbjct: 3 QQLSFDLPAVPAMGRDDFFVSASNAAAVAMIETWQSWPARKLMLRGPSGAGKTHLAHVWA 62 Query: 86 DKS--RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSL 140 S R S++A++ I PV +ED+ + Q LFH+ N + +SL Sbjct: 63 SLSGARIIAASDLAEA--DIPTLASGPVAVEDLWQITGERAQERALFHLHNLVLAEGNSL 120 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L+T+ + LPDL SR++ V+I PDD L V++K+FADRQ+ + Y Sbjct: 121 LITSSDDSALSDIHLPDLASRMEGTPGVRIEPPDDALLAAVLMKLFADRQLRPTPETLPY 180 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 IV RM R+ A LV+ +D LAL G I R LAA L Q Sbjct: 181 IVPRMPRAFAAARNLVETLDQLALDTGKPINRRLAATALDNLQ 223 >gi|218530297|ref|YP_002421113.1| chromosomal replication initiator DnaA [Methylobacterium chloromethanicum CM4] gi|218522600|gb|ACK83185.1| chromosomal replication initiator DnaA [Methylobacterium chloromethanicum CM4] Length = 252 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 85/225 (37%), Positives = 129/225 (57%), Gaps = 6/225 (2%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 +QL F P +D LV + E+A LI++WP WP V +L GP GSGKS LA+IW+ Sbjct: 8 KQLTFDLPLDPRYGAEDFLVSPSNEEAYALIEAWPDWPDTVFLLRGPPGSGKSHLASIWA 67 Query: 86 DKSRSTRFSNIAKSLDSI--LIDTRKPVLLEDIDLLDFND-TQLFHIINSIHQYDSSLLM 142 ++++ S ++D + LI + +++ED+D D + LFH++N + +L+ Sbjct: 68 TRAQAWTVSAADVAMDRVSHLI-SNGALVVEDVDRAAGRDESALFHLLNLARERRFPVLL 126 Query: 143 TARTFPV-SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 TA PV +G+ + DL SRL+ A +I PDD L+ VIVK+FADRQ+ ID + + Sbjct: 127 TA-CGPVDGFGLKVADLRSRLRLAPGAEIGPPDDALLKAVIVKLFADRQLGIDTSVVDAL 185 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 R++RSL ++V ++D AL R ITR LA VL + D Sbjct: 186 ALRIDRSLARVREVVAELDRDALGRRRRITRPLALAVLDRMEAAD 230 >gi|254561253|ref|YP_003068348.1| hypothetical protein METDI2832 [Methylobacterium extorquens DM4] gi|254268531|emb|CAX24488.1| conserved hypothetical protein [Methylobacterium extorquens DM4] Length = 252 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 85/225 (37%), Positives = 128/225 (56%), Gaps = 6/225 (2%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 +QL F P +D LV + E+A LI++WP WP V +L GP GSGKS LA+IW+ Sbjct: 8 KQLTFDLPLDPRYGAEDFLVSPSNEEAYALIEAWPDWPDTVFLLRGPPGSGKSHLASIWA 67 Query: 86 DKSRSTRFSNIAKSLDSI--LIDTRKPVLLEDIDLLDFND-TQLFHIINSIHQYDSSLLM 142 ++++ S ++D + LI + +++ED+D D LFH++N + +L+ Sbjct: 68 TRAQAWTVSAADVAMDRVSHLI-SNGALVVEDVDRAAGRDEAALFHLLNLARERRFPVLL 126 Query: 143 TARTFPV-SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 TA PV +G+ + DL SRL+ A +I PDD L+ VIVK+FADRQ+ ID + + Sbjct: 127 TA-CGPVDGFGLKVADLRSRLRLAPGAEIGPPDDALLKAVIVKLFADRQLGIDTSVVDAL 185 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 R++RSL ++V ++D AL R ITR LA VL + D Sbjct: 186 ALRIDRSLARVREVVAELDRDALGRRRRITRPLALAVLDRMEAAD 230 >gi|163851490|ref|YP_001639533.1| chromosomal replication initiator DnaA [Methylobacterium extorquens PA1] gi|240138655|ref|YP_002963127.1| hypothetical protein MexAM1_META1p2048 [Methylobacterium extorquens AM1] gi|163663095|gb|ABY30462.1| chromosomal replication initiator DnaA [Methylobacterium extorquens PA1] gi|240008624|gb|ACS39850.1| conserved hypothetical protein [Methylobacterium extorquens AM1] Length = 252 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 85/225 (37%), Positives = 128/225 (56%), Gaps = 6/225 (2%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 +QL F P +D LV + E+A LI++WP WP V +L GP GSGKS LA+IW+ Sbjct: 8 KQLTFDLPLDPRYGAEDFLVSPSNEEAYALIEAWPDWPDTVFLLRGPPGSGKSHLASIWA 67 Query: 86 DKSRSTRFSNIAKSLDSI--LIDTRKPVLLEDIDLLDFND-TQLFHIINSIHQYDSSLLM 142 ++++ S ++D + LI + +++ED+D D LFH++N + +L+ Sbjct: 68 TRAQAWTVSAADVAMDRVSHLI-SNGALVVEDVDRAAGRDEAALFHLLNLARERRFPVLL 126 Query: 143 TARTFPV-SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 TA PV +G+ + DL SRL+ A +I PDD L+ VIVK+FADRQ+ ID + + Sbjct: 127 TA-CGPVDGFGLKVADLRSRLRLAPGAEIGPPDDALLKAVIVKLFADRQLGIDTSVVDAL 185 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 R++RSL ++V ++D AL R ITR LA VL + D Sbjct: 186 ALRIDRSLARVREVVAELDRDALGRRRRITRPLALAVLDRMEAAD 230 >gi|209964848|ref|YP_002297763.1| hypothetical protein RC1_1547 [Rhodospirillum centenum SW] gi|209958314|gb|ACI98950.1| conserved hypothetical protein [Rhodospirillum centenum SW] Length = 238 Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 81/228 (35%), Positives = 123/228 (53%), Gaps = 7/228 (3%) Query: 22 KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 +NK+ L +G + D LV AV +D+WP WP+ ++L GP GSGKS LA Sbjct: 4 ENKQLSLDLGHRSAMGEA--DFLVAPGNADAVAWLDAWPDWPAPALVLFGPPGSGKSHLA 61 Query: 82 NIWSDKSRSTRFSNIAKSLDSI--LIDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQY 136 IW +SR+ LDS+ L+ + V+L+ + + + LFH+ N+ + Sbjct: 62 QIWRARSRAVLVEPDDLHLDSVPDLLRPMRTVVLDRAHEVAGDPARERVLFHLYNAAKEI 121 Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196 SLL+ A PV+W + LPDL SRL AA V ++ PDD L V+VK+FADRQI + + Sbjct: 122 GGSLLLLADNAPVNWVLRLPDLRSRLLAAPAVGMAAPDDALLMAVLVKLFADRQIRVGED 181 Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 + +++ R ERS A ++V+ +D AL IT VL++ + Sbjct: 182 VIRWLMTRTERSFANARRVVEALDRAALEAKKPITVPFCKAVLEQDAE 229 >gi|84501589|ref|ZP_00999761.1| hypothetical protein OB2597_15345 [Oceanicola batsensis HTCC2597] gi|84390210|gb|EAQ02769.1| hypothetical protein OB2597_15345 [Oceanicola batsensis HTCC2597] Length = 226 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 125/223 (56%), Gaps = 6/223 (2%) Query: 28 LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87 L + PR G++R D +V + A+ +ID W WP ++L GP GSGK+ LA+IW+ + Sbjct: 5 LPLTHPRLPGLTRSDFVVAPSNAVALAMIDQWRDWPGGKLVLTGPPGSGKTHLAHIWAAE 64 Query: 88 SRSTRFSNIAKSLDSILID--TRKPVLLEDIDLLDFNDTQ--LFHIINSIHQYDSSLLMT 143 + + + A+ L+ + +++ED D + Q LFH+ N + + LL+T Sbjct: 65 ANARILA--ARDLERAAVPELASTALVVEDADAIPDAAPQDALFHLHNLMREAQRPLLLT 122 Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203 SW + LPDL SRL+ A + PDD L V+VK+F +RQ+ + ++ Y+++ Sbjct: 123 GSRAVASWPLTLPDLKSRLQGAQSAVLDRPDDTLLNAVLVKLFIERQLQVSPQVVHYLLR 182 Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 RM+RS A ++V+ +D +L++ IT LAAEVL + + + Sbjct: 183 RMDRSFDAARRVVEALDFASLAQRRAITTRLAAEVLDKIEGAE 225 >gi|188581279|ref|YP_001924724.1| chromosomal replication initiator DnaA [Methylobacterium populi BJ001] gi|179344777|gb|ACB80189.1| chromosomal replication initiator DnaA [Methylobacterium populi BJ001] Length = 252 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 86/225 (38%), Positives = 128/225 (56%), Gaps = 6/225 (2%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 +QL F P +D LV + E+A LI++WP WP V +L GP GSGKS LA+IW+ Sbjct: 8 QQLTFDLPLDPRYGAEDFLVSPSNEEAYALIEAWPDWPDTVFLLRGPPGSGKSHLASIWA 67 Query: 86 DKSRSTRFS--NIAKSLDSILIDTRKPVLLEDIDLLDFND-TQLFHIINSIHQYDSSLLM 142 ++++ S ++A + S LI + +++ED+D D LFH++N + +L+ Sbjct: 68 TRAQAWTVSAADVAGTNVSHLI-SNGALVVEDVDREAGRDEAALFHLLNLARERRFPVLL 126 Query: 143 TARTFPV-SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 TA PV +G+ + DL SRL+ A +I PDD L+ VIVK+FADRQ+ ID + + Sbjct: 127 TA-CGPVDGFGLKVADLRSRLRLAPGAEIGPPDDALLKAVIVKLFADRQLGIDTSVVDAL 185 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 R++RSL ++V ++D AL R ITR LA VL D Sbjct: 186 ALRIDRSLARVREVVAELDRDALGRRRRITRPLALAVLDRMAAAD 230 >gi|89070130|ref|ZP_01157459.1| hypothetical protein OG2516_02718 [Oceanicola granulosus HTCC2516] gi|89044247|gb|EAR50393.1| hypothetical protein OG2516_02718 [Oceanicola granulosus HTCC2516] Length = 223 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 80/215 (37%), Positives = 114/215 (53%), Gaps = 2/215 (0%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL F +P + D V A A ++ WP ++L GP GSGK+ LA +++ Sbjct: 4 QLSFEWPHEVTFGEDSYYVSEANGTAYAMVTRPGDWPEGKLVLAGPQGSGKTHLARLFAA 63 Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ-LFHIINSIHQYDSSLLMTAR 145 ++ + A + L +T V+LED D L + +FH+ NS+ +LL TA Sbjct: 64 RTGALILDAPALAGTEPLPETGD-VVLEDADRLPRQAEEWVFHLHNSLAAAGGALLFTAA 122 Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 P W V LPDL SRL+AATVVKI PDD L V+ K+ DRQ+ L ++V RM Sbjct: 123 APPTRWAVALPDLVSRLQAATVVKIGDPDDALLAAVLRKILRDRQLAYADGLIPWLVPRM 182 Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 RS A + +D ++ AL RG +T +LA EVL+ Sbjct: 183 TRSFAAARRTIDVLEAAALGRGKRLTINLAREVLQ 217 >gi|83954040|ref|ZP_00962760.1| hypothetical protein NAS141_17079 [Sulfitobacter sp. NAS-14.1] gi|83841077|gb|EAP80247.1| hypothetical protein NAS141_17079 [Sulfitobacter sp. NAS-14.1] Length = 227 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 76/217 (35%), Positives = 120/217 (55%), Gaps = 3/217 (1%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 +QL P + RDD V + AV +I+ W +W R ++L GP GSGK+ LA++W+ Sbjct: 3 QQLGLDLPSRPALGRDDFFVAPSNAIAVAMIEGWQAWAGRKMVLTGPPGSGKTHLAHVWA 62 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI-DLLDFN--DTQLFHIINSIHQYDSSLLM 142 + S + + I + P+ +E++ D+ N +T LFH+ N + SLL+ Sbjct: 63 NLSGAGIIDARDIATGDIPALAQGPLAVENVPDIAGDNAAETHLFHLHNLVLAEGHSLLL 122 Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 T WG+ LPDL SR++AAT + PDD L V+ K+ ADRQ+ + Y++ Sbjct: 123 TGTPAVPQWGLHLPDLTSRMRAATAAALEAPDDSLLTAVMAKLLADRQLTPKPDVIPYLL 182 Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 RM+RS A +LV +D +L++ +TR+LAA+VL Sbjct: 183 LRMDRSFAAAGELVAALDAASLAQQKPVTRALAAQVL 219 >gi|163740900|ref|ZP_02148293.1| hypothetical protein RG210_13706 [Phaeobacter gallaeciensis 2.10] gi|161385891|gb|EDQ10267.1| hypothetical protein RG210_13706 [Phaeobacter gallaeciensis 2.10] Length = 256 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 71/219 (32%), Positives = 118/219 (53%), Gaps = 3/219 (1%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 +QL F P + RDD V + AV ++D +WP ++L GP SGK+ L ++W+ Sbjct: 3 QQLSFDLPAKPALGRDDFFVAPSNAMAVAMLDPSFAWPGGKLVLSGPKRSGKTHLVHVWA 62 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI-DLLDFNDTQ--LFHIINSIHQYDSSLLM 142 S + + + + P+ +ED+ D+ D Q LFH+ N + +L++ Sbjct: 63 SNSGAQIIPAWQLTKEDVPHLADGPIAVEDVPDIADSAPAQDALFHLHNLVLANGHALML 122 Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 T R P WG+ LPDL SR++ A ++ PDD L V+ K+F DRQI + Y+V Sbjct: 123 TGRAAPHLWGMSLPDLQSRIEGAPHAQLQPPDDALLSVVLAKLFNDRQITPKPDVIPYLV 182 Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 M+RS A ++V+++D L+L+ G ++R LA E++ + Sbjct: 183 AHMDRSFAAASQIVEELDRLSLTEGRMVSRVLAVELMSD 221 >gi|163737419|ref|ZP_02144836.1| Chromosomal replication initiator, DnaA [Phaeobacter gallaeciensis BS107] gi|161388945|gb|EDQ13297.1| Chromosomal replication initiator, DnaA [Phaeobacter gallaeciensis BS107] Length = 256 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 71/219 (32%), Positives = 118/219 (53%), Gaps = 3/219 (1%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 +QL F P + RDD V + AV ++D +WP ++L GP SGK+ L ++W+ Sbjct: 3 QQLSFDLPAKPALGRDDFFVAPSNAMAVAMLDPSFAWPGGKLVLSGPKRSGKTHLVHVWA 62 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI-DLLDFNDTQ--LFHIINSIHQYDSSLLM 142 S + + + + P+ +ED+ D+ D Q LFH+ N + +L++ Sbjct: 63 SNSGAQIIPAWQLTKEDVPHLADGPIAVEDVPDIADSAPAQDALFHLHNLVLANGHALML 122 Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 T R P WG+ LPDL SR++ A ++ PDD L V+ K+F DRQI + Y+V Sbjct: 123 TGRAAPHLWGMSLPDLQSRIEGAPHAQLQPPDDALLSVVLAKLFNDRQITPKPDVIPYLV 182 Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 M+RS A ++V+++D L+L+ G ++R LA E++ + Sbjct: 183 AHMDRSFAAASQIVEELDRLSLTEGRMVSRVLAVELMSD 221 >gi|83942870|ref|ZP_00955330.1| hypothetical protein EE36_11853 [Sulfitobacter sp. EE-36] gi|83845878|gb|EAP83755.1| hypothetical protein EE36_11853 [Sulfitobacter sp. EE-36] Length = 227 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 76/217 (35%), Positives = 119/217 (54%), Gaps = 3/217 (1%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 +QL P + RDD V + AV +I+ W +W R ++L GP GSGK+ LA++W+ Sbjct: 3 QQLGLDLPSRPALGRDDFFVAPSNAIAVAMIEGWQAWAGRKMVLTGPPGSGKTHLAHVWA 62 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI-DLLDFN--DTQLFHIINSIHQYDSSLLM 142 + S + + I + P+ +E++ D+ N +T LFH+ N + SLL+ Sbjct: 63 NLSGAGIIDARDIATGDIPALAQGPLAVENVPDIAGDNAAETHLFHLHNLVLAEGHSLLL 122 Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 T WG+ LPDL SR++AAT + PDD L V+ K+ ADRQ+ + Y++ Sbjct: 123 TGTPAVPQWGLHLPDLTSRMRAATAAALEAPDDSLLTAVMAKLLADRQLTPKPDVIPYLL 182 Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 RM+RS A LV +D +L++ +TR+LAA+VL Sbjct: 183 LRMDRSFAAAGDLVAALDAASLAQQKPVTRALAAQVL 219 >gi|119384046|ref|YP_915102.1| hypothetical protein Pden_1301 [Paracoccus denitrificans PD1222] gi|119373813|gb|ABL69406.1| conserved hypothetical protein [Paracoccus denitrificans PD1222] Length = 229 Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 78/213 (36%), Positives = 117/213 (54%), Gaps = 5/213 (2%) Query: 39 SRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAK 98 SRDD L+ +A A+ ++D+ WP ++L+G GSGKS L W+ + + Sbjct: 16 SRDDFLITAANRDALAMLDAPGCWPQGRLLLIGGPGSGKSHLVGFWAAEHGAQICHGWTL 75 Query: 99 SLDSI--LIDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGV 153 + + + L+ +++ED + N T LFH+ N + LL+TAR+ P WGV Sbjct: 76 APEGVDELVQPGAALVVEDAHEIGGNPTAEQGLFHLWNLAGARGALLLITARSAPRDWGV 135 Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213 LPDL SRL+ A + PDD L V+VK+FADRQI + ++ ++V RMER L A Sbjct: 136 ALPDLRSRLETAAQAILGPPDDAMLTAVLVKLFADRQIQVAPEVVDWLVLRMERDLDMAR 195 Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 +LV +D +L+ ITR LAAE+L + D Sbjct: 196 RLVAAIDRESLADRRAITRRLAAELLDKLAPVD 228 >gi|209885461|ref|YP_002289318.1| chromosomal replication initiator, DnaA [Oligotropha carboxidovorans OM5] gi|209873657|gb|ACI93453.1| chromosomal replication initiator, DnaA [Oligotropha carboxidovorans OM5] Length = 230 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 79/215 (36%), Positives = 122/215 (56%), Gaps = 1/215 (0%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL P +SRDD L + QA+ LID WP W +RV++LVGP G GKS LA IW+ Sbjct: 9 QLALDLPHAESLSRDDYLEGPSNAQALALIDRWPDWTNRVMMLVGPEGCGKSHLAAIWAA 68 Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLL-EDIDLLDFNDTQLFHIINSIHQYDSSLLMTAR 145 ++ + A + + L+ E ++ F++ +FH++N + ++ +LMTAR Sbjct: 69 EAGARIVGAHALTPQDVPGALATGALVVEHLEPGYFDERAVFHLLNLARETNAFVLMTAR 128 Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 P S+ V L D SRL+A VV + PDD L ++VK ADRQ+ +D+ + +Y+ R+ Sbjct: 129 AAPASFEVELRDAGSRLRAIPVVSVEPPDDQLLRALLVKFCADRQMAVDESVVSYLATRI 188 Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 ERS A V+++D AL +TR+LAA + + Sbjct: 189 ERSFAAARDAVEQLDAEALRLRRPVTRALAAALFR 223 >gi|126728914|ref|ZP_01744729.1| hypothetical protein SSE37_08803 [Sagittula stellata E-37] gi|126710844|gb|EBA09895.1| hypothetical protein SSE37_08803 [Sagittula stellata E-37] Length = 233 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 76/218 (34%), Positives = 113/218 (51%), Gaps = 5/218 (2%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 +QL P + R+D V A AV LID W WP +++ GP GSGK+ LA++W+ Sbjct: 5 KQLPLPLPAREALGREDFFVSEANAMAVALIDRWSEWPGAKMVICGPRGSGKTHLAHVWA 64 Query: 86 DKSRSTRFSNIAKSLDSILID-TRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLL 141 K R N + + D P+ +ED++ + + + LFH+ N LL Sbjct: 65 -KLSGARILNADTLAGADIPDLAAAPLCVEDVERIAGDRPAEEALFHLHNLALAQGHQLL 123 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 MTA P W + LPDL SR+ A V ++ PDD L ++ K FADRQI ++ +Y+ Sbjct: 124 MTAEREPSLWPLVLPDLKSRIMGAQVARLGAPDDALLTALLAKQFADRQITPGPEVLSYL 183 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + M RS A +V +D +L+ +TRS+AA VL Sbjct: 184 TRHMPRSHAAARDVVAALDESSLADKKRVTRSMAAAVL 221 >gi|217977144|ref|YP_002361291.1| chromosomal replication initiator DnaA [Methylocella silvestris BL2] gi|217502520|gb|ACK49929.1| chromosomal replication initiator DnaA [Methylocella silvestris BL2] Length = 240 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 75/204 (36%), Positives = 114/204 (55%), Gaps = 1/204 (0%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNI 96 G + +D + + E A ++I+ WP W + +IL+GP+GSGKS L IW+ K+ +T + Sbjct: 15 GFAAEDFFISGSNESAYQMIERWPDWSNSALILIGPAGSGKSHLGAIWAAKAGATTIAAA 74 Query: 97 AK-SLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 + + +L+ED++ + QLFH++N L+MTAR P L Sbjct: 75 TLAGREPAALVAAGALLIEDLEAIGPGQAQLFHLVNLALPRRLPLVMTARRPPGPDNFDL 134 Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215 PDL SRL+ A V I PDD + V+VK+ DRQ+ +D +L Y R++ SL A Sbjct: 135 PDLLSRLRLAPSVSIGAPDDALMRMVLVKLLMDRQLVVDVRLVDYAALRLDYSLEAARSF 194 Query: 216 VDKMDNLALSRGMGITRSLAAEVL 239 V+K+D AL+R +TR +AAEVL Sbjct: 195 VEKLDREALARKSRVTRQIAAEVL 218 >gi|89053548|ref|YP_508999.1| chromosomal replication initiator, DnaA [Jannaschia sp. CCS1] gi|88863097|gb|ABD53974.1| Chromosomal replication initiator DnaA [Jannaschia sp. CCS1] Length = 233 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 72/206 (34%), Positives = 110/206 (53%), Gaps = 11/206 (5%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL F P + RDD V +A AV ID+W WP+ ++L GP SGK+ LA++W+ Sbjct: 4 QLTFDLPLRPAMGRDDFFVSAANAGAVAQIDAWEGWPTAKLVLCGPPASGKTHLAHVWA- 62 Query: 87 KSRSTRFSNIAKSLDSILIDTR---KPVLL----EDIDLLDFNDTQLFHIINSIHQYDSS 139 +T + I ++ D + R P L+ EDI + +FHI N++ + Sbjct: 63 ---ATTGAQIVQATDIVSQIERLSTAPALVIEDAEDISEDALAEEGMFHIHNALSHRGAP 119 Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199 LL+TAR P WG LPDL SR+ A + ++ PDD L V++K DR++ + K+ Sbjct: 120 LLITARLPPSRWGTQLPDLASRMAQAGLARLEAPDDALLMAVMMKRAFDRKLPLSPKILT 179 Query: 200 YIVQRMERSLVFAEKLVDKMDNLALS 225 + R+ERS A+ + ++D LALS Sbjct: 180 FAAPRLERSFAAADAFIARVDALALS 205 >gi|260575896|ref|ZP_05843891.1| conserved hypothetical protein [Rhodobacter sp. SW2] gi|259021822|gb|EEW25123.1| conserved hypothetical protein [Rhodobacter sp. SW2] Length = 230 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/215 (36%), Positives = 119/215 (55%), Gaps = 3/215 (1%) Query: 28 LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87 + F P + R D V A A+ +D W WP ++LVGP+G+GK+ LA+IW+ Sbjct: 1 MAFDLPTSEALGRADFCVSPANALALAALDGWRDWPGGKMLLVGPAGAGKTHLAHIWASD 60 Query: 88 SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTA 144 + + + A + + + + +ED + + N + LFH+ N + LL+TA Sbjct: 61 AGAGLIAGSALAGADLPALAQTALCVEDAESVAGNPAAEAALFHLHNLAAERGMPLLLTA 120 Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 T P WG+ LPDL SR++A + ++ PDD L ++VK+FADRQI + L Y+V R Sbjct: 121 ATPPRDWGLGLPDLASRMQATPLTRLDAPDDALLSALLVKLFADRQISVPPNLIPYLVSR 180 Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 M+RS A LV +D AL+ G ITR LAA+V+ Sbjct: 181 MDRSFAAARALVAALDARALALGRPITRQLAADVI 215 >gi|56696015|ref|YP_166369.1| hypothetical protein SPO1118 [Ruegeria pomeroyi DSS-3] gi|56677752|gb|AAV94418.1| conserved hypothetical protein [Ruegeria pomeroyi DSS-3] Length = 225 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 77/216 (35%), Positives = 114/216 (52%), Gaps = 4/216 (1%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL F P + R+D V A AV +I S WP ++L GP+G+GK+ LA++W+ Sbjct: 4 QLSFDLPAMTALGREDFFVSPANALAVAMI-SARIWPGGKLVLTGPAGAGKTHLAHVWAS 62 Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMT 143 ++ + A I PV +ED+ LL +D + LFH+ N LL+T Sbjct: 63 ETGARIIEATALVEADIPELAAGPVAVEDVPLLAGDDARQALLFHLHNLTLANGHPLLLT 122 Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203 R P W + LPDL SR+ AA V + PDD L V+ K+F DRQ+ ++ +Y+V+ Sbjct: 123 GRAAPGFWDLSLPDLQSRVDAAQHVALDPPDDALLGAVLAKLFVDRQLSPGPEVISYLVK 182 Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 M+RS A + V +D +AL ITR+LA +L Sbjct: 183 HMDRSFEAAARTVAALDRIALDEKRDITRALAVRLL 218 >gi|170743265|ref|YP_001771920.1| chromosomal replication initiator DnaA [Methylobacterium sp. 4-46] gi|168197539|gb|ACA19486.1| Chromosomal replication initiator DnaA [Methylobacterium sp. 4-46] Length = 233 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 73/208 (35%), Positives = 111/208 (53%), Gaps = 2/208 (0%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL P +D LV + E A I++WP WP V++L GP GSGKS LA IW++ Sbjct: 7 QLALDLPLDPRFGPEDFLVGPSNEDAYARIEAWPDWPDPVLVLTGPPGSGKSHLAAIWAE 66 Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLL-EDIDLLDFND-TQLFHIINSIHQYDSSLLMTA 144 ++ + + A + ++ +P L+ ED D D LFH++N + L++T Sbjct: 67 RAGARIVAAGAVTRAALPDLAGEPALVVEDADRPSGRDEPALFHLLNLARERGRGLVVTG 126 Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 WG PDL SRL+ A + ++ PD+ L V+VK+F DRQ+ +D + + R Sbjct: 127 SGPVEGWGFATPDLRSRLRLAPTLGLAPPDEALLRAVLVKLFVDRQLVVDTSVVDALALR 186 Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITR 232 ++RSL A +V +D+ LSRG ITR Sbjct: 187 IDRSLGRARDVVAALDHEGLSRGRRITR 214 >gi|254419375|ref|ZP_05033099.1| chromosomal replication initiator protein DnaA [Brevundimonas sp. BAL3] gi|196185552|gb|EDX80528.1| chromosomal replication initiator protein DnaA [Brevundimonas sp. BAL3] Length = 224 Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 73/195 (37%), Positives = 109/195 (55%), Gaps = 6/195 (3%) Query: 51 QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110 +AVR++ WP V+ L GP+GSGKS LA W+++ + + + +L L +P Sbjct: 30 EAVRVLSRWPDGAGSVLALYGPAGSGKSRLAADWAERVGAVPLNGVEAALVDPLELEGRP 89 Query: 111 VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 VLL+ D +D LFH+IN H +LL+ +R P +W V LPDL SRL A V + Sbjct: 90 VLLDRAR--DADDESLFHLINLAHTGGGALLLVSRAAPRNWSVALPDLRSRLDAVRTVAV 147 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 PDD L ++ FA+R I ++ AY+V+R++RS A V+++D AL R + Sbjct: 148 EAPDDRVLSAILRARFAERSIAPTDEVIAYLVRRLDRSADTAATAVERLD--ALHR--PV 203 Query: 231 TRSLAAEVLKETQQC 245 TR+LA +VL E Sbjct: 204 TRALARQVLDEMSAA 218 >gi|260430971|ref|ZP_05784942.1| chromosomal replication initiator, DnaA [Silicibacter lacuscaerulensis ITI-1157] gi|260414799|gb|EEX08058.1| chromosomal replication initiator, DnaA [Silicibacter lacuscaerulensis ITI-1157] Length = 229 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 74/218 (33%), Positives = 117/218 (53%), Gaps = 4/218 (1%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL F P + R+D V + AV +I S SWP ++L GP+GSGK+ LA++W+ Sbjct: 4 QLSFDLPAKTALGREDFFVSPSNALAVAMI-SANSWPGNKLVLSGPAGSGKTHLAHVWAA 62 Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMT 143 ++ D + + R P+ +ED+ ++ + Q LFH+ N + +LL+T Sbjct: 63 ETGGQIIQATNLRHDDVPLLARAPIAVEDVPMIAGDIEQQKVLFHLHNLVLAEGHALLLT 122 Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203 R P W + L DL SR++ A V + PDD L V+ K+F DRQ+ + AY+V+ Sbjct: 123 GRLAPKYWELPLADLQSRVEGAHHVALDPPDDALLCAVLAKLFVDRQLNPGPDVIAYLVK 182 Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 M+R A +V ++D++AL ITR+LA VL + Sbjct: 183 HMDRRFETAADVVAQLDHVALMEKREITRTLAIRVLNK 220 >gi|163792847|ref|ZP_02186823.1| hypothetical protein BAL199_23699 [alpha proteobacterium BAL199] gi|159181493|gb|EDP66005.1| hypothetical protein BAL199_23699 [alpha proteobacterium BAL199] Length = 229 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 114/225 (50%), Gaps = 17/225 (7%) Query: 28 LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS--RVVILVGPSGSGKSCLANIWS 85 L + R LG R D LV + A ID WP WP+ R + +VGP+ GK+ L +W Sbjct: 8 LDLGYRRALG--RSDYLVTACNADAAAWIDRWPDWPAPLRGLAIVGPAECGKTHLGAVWR 65 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI------DLLDFNDTQ-LFHIINSIHQYDS 138 S + + ++D + P L D DL Q L H+ N++ + Sbjct: 66 RASGAVAVNAADLTVDGL------PDALGDATHAAVDDLTGIRAPQALLHLYNTVAERGG 119 Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198 S+L+ +RT P LPDL SRL + + PD+ L V+ K FADRQ+ + + + Sbjct: 120 SVLILSRTAPARCDFGLPDLASRLATLPIAMVGPPDEALLAGVLGKHFADRQVAVREDVV 179 Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 AY+V RMERS A +LVD++D LAL+ G + R+LA L + + Sbjct: 180 AYLVARMERSFSAAYRLVDRLDRLALAEGRKVDRALAKRALADDE 224 >gi|83945464|ref|ZP_00957811.1| hypothetical protein OA2633_01079 [Oceanicaulis alexandrii HTCC2633] gi|83851040|gb|EAP88898.1| hypothetical protein OA2633_01079 [Oceanicaulis alexandrii HTCC2633] Length = 222 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 67/182 (36%), Positives = 105/182 (57%), Gaps = 2/182 (1%) Query: 59 WPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL 118 WP W ++LVGP+GSGK+ L+++W+ ++R+TR + S + VL+ED D Sbjct: 37 WPRWRQGHLLLVGPAGSGKTHLSHMWTARTRATRLDPASLSNGLKTVGRGAAVLVEDCDR 96 Query: 119 LDFNDTQLFHIIN-SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 ++ LFH++N + ++LMTA P W V LPDL SRL A + PDD Sbjct: 97 -GVDEDALFHLLNRAAGDAGVTVLMTAGKAPAEWPVRLPDLASRLIATETAVLHEPDDAL 155 Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237 L +V+ K+F D++ + + Y++ RMERS+ +A +L +D AL+R +TR+LA E Sbjct: 156 LRQVMEKLFRDKRTPLSPGVLEYLLDRMERSVDYARRLTAWLDREALARKGPVTRTLARE 215 Query: 238 VL 239 L Sbjct: 216 AL 217 >gi|254440942|ref|ZP_05054435.1| chromosomal replication initiator protein DnaA [Octadecabacter antarcticus 307] gi|198251020|gb|EDY75335.1| chromosomal replication initiator protein DnaA [Octadecabacter antarcticus 307] Length = 223 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 79/218 (36%), Positives = 117/218 (53%), Gaps = 9/218 (4%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 QL F P + + D V A A +I + +WP + L+GP+GSGK+ LA ++S Sbjct: 3 RQLAFDLPTNVRLGAVDFFVSDANALAYAMIQTSQTWPGNKLALIGPAGSGKTHLARVFS 62 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKP---VLLEDIDLLDFNDTQ-LFHIINSIHQYDSSLL 141 +S + I + D I DT P V+LED D L + LFH N++ + LL Sbjct: 63 AQSGAM----IINAKD-IRADTGLPSGNVVLEDGDALPPEGEEWLFHAYNALARDGFMLL 117 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 +T+R W + LPDL SRL A T +KI PDD L V++K FADRQ+ + A++ Sbjct: 118 LTSRLPAARWDIALPDLASRLSAITSIKIENPDDPLLTAVLLKHFADRQLAPTPEAVAFL 177 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 ++R+ RSL ++VD +D AL++ +TR VL Sbjct: 178 IKRLPRSLDAVRRIVDTLDRKALAQSKPLTRPFVRAVL 215 >gi|221640240|ref|YP_002526502.1| Chromosomal replication initiator, DnaA [Rhodobacter sphaeroides KD131] gi|221161021|gb|ACM02001.1| Chromosomal replication initiator, DnaA [Rhodobacter sphaeroides KD131] Length = 231 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 70/194 (36%), Positives = 106/194 (54%), Gaps = 4/194 (2%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL F P +SR+D + A A+ +D W WP ++LVGP GSGK+ LA+IW+ Sbjct: 4 QLAFDLPIRPALSREDFFISPANALALASLDGWRDWPRGKMVLVGPRGSGKTHLAHIWAA 63 Query: 87 KSRSTRFSNIA-KSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLM 142 ++ + A D + V +ED + L + + LFH+ N + + +LL+ Sbjct: 64 QAEARLIPAEALARADLPALAADGAVAVEDAERLGGDRAAEEALFHLHNLMLERAGALLI 123 Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 TA P WG+ L DL SR++AA+V ++ PDD L ++VK+F DRQI + L ++V Sbjct: 124 TAAGPPRDWGLGLADLKSRMQAASVTRLEAPDDALLSAMLVKLFTDRQIAVPGMLVPWLV 183 Query: 203 QRMERSLVFAEKLV 216 RM+RS A LV Sbjct: 184 ARMDRSCEAARALV 197 >gi|114704852|ref|ZP_01437760.1| hypothetical protein FP2506_07946 [Fulvimarina pelagi HTCC2506] gi|114539637|gb|EAU42757.1| hypothetical protein FP2506_07946 [Fulvimarina pelagi HTCC2506] Length = 223 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 71/214 (33%), Positives = 109/214 (50%), Gaps = 4/214 (1%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL P + RDDL+V + A ID+WP W V+++VGP GSGK+ LA IW++ Sbjct: 4 QLPLELPSIEQLGRDDLIVSHSNTLAAEAIDAWPDWQHNVLLIVGPEGSGKTHLARIWAE 63 Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTART 146 + +T + + R ++++DID D D+ LF IN+ +L T+R Sbjct: 64 AADATILG--LGEIGPLSGGFR--LVIDDIDRPDVADSDLFAPINAARLGQGWVLATSRV 119 Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206 P LPDL SRL AA + PDD E ++ K F+D Q+ +D Y+ R+E Sbjct: 120 SPKMMAGRLPDLVSRLSAAARADLDPPDDVLFEGILAKRFSDHQLVVDPPTLTYLATRIE 179 Query: 207 RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 R+ A +V+ ++ AL+ IT+ VL+ Sbjct: 180 RTGSAARAIVEDINRQALAEKSRITKPFVRRVLE 213 >gi|84515333|ref|ZP_01002695.1| hypothetical protein SKA53_01706 [Loktanella vestfoldensis SKA53] gi|84510616|gb|EAQ07071.1| hypothetical protein SKA53_01706 [Loktanella vestfoldensis SKA53] Length = 220 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 75/215 (34%), Positives = 122/215 (56%), Gaps = 3/215 (1%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 QL F +P + + DD V +A A ++ WP +++ GP+G GKS LA I++ Sbjct: 4 RQLSFDWPNGVALGPDDFFVSTANATAFGMVTDPARWPLCKLVITGPAGCGKSHLARIFA 63 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ-LFHIINSIHQYDSSLLMTA 144 + + A L + +++ED+D L + +FH+ N +H LL+TA Sbjct: 64 AGQPTQIIA--AADLTADFRPKAAALVVEDMDTLPSAAQEAMFHLHNHLHNNGGLLLLTA 121 Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 R P W + LPDL SR++ + VV+++ PDD L+ V++K+FADRQ+ LAAY+ R Sbjct: 122 RQTPRHWPITLPDLASRMQGSAVVQVADPDDALLQAVMMKLFADRQLLPPPDLAAYLAPR 181 Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 +ERS A +V ++D++AL+ G I++ LAA +L Sbjct: 182 IERSFAAAAAIVAELDSMALATGHKISQRLAARLL 216 >gi|46202132|ref|ZP_00208394.1| COG0593: ATPase involved in DNA replication initiation [Magnetospirillum magnetotacticum MS-1] Length = 231 Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 76/218 (34%), Positives = 116/218 (53%), Gaps = 2/218 (0%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 E QL +F ++ +D LV +A + + WP IL GP+GSGK+ LA+++ Sbjct: 3 EAQLPLAFGHVPSLAAEDFLVAPCNAEAHAWVGAPQRWPGPASILCGPAGSGKTHLAHLF 62 Query: 85 SDKSRSTRFSNIAKSLDS--ILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLM 142 + + DS L+++ +++ED D ++ LFH+IN + LL+ Sbjct: 63 ARDGGGILVPAAQVTEDSSRPLLESVPVLVVEDCDRASLDEVALFHLINQSRELGRFLLL 122 Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 TAR+ P W V LPDL SRL A V I PDD L ++VK+F DRQ+ I + + ++V Sbjct: 123 TARSAPAHWAVRLPDLRSRLLAMPVASILAPDDALLAALLVKLFDDRQLRIGEDVVHFLV 182 Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 RMERS A LVD++D A + +T LA +L+ Sbjct: 183 GRMERSFAAAASLVDRLDRAAWAGRRAVTVPLARRILE 220 >gi|255261822|ref|ZP_05341164.1| chromosomal replication initiator, DnaA [Thalassiobium sp. R2A62] gi|255104157|gb|EET46831.1| chromosomal replication initiator, DnaA [Thalassiobium sp. R2A62] Length = 224 Score = 115 bits (287), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 78/220 (35%), Positives = 118/220 (53%), Gaps = 7/220 (3%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 EQL F P + + DD V SA + R I P+WP + L+GP SGKS LA +++ Sbjct: 3 EQLSFDLPERIAMGADDFYVSSANDVPYRAITGSPNWPDGKLALIGPKSSGKSHLARMFA 62 Query: 86 DKSRSTRFSNIAKSLDSI--LIDTRKPVLLEDIDLLDFNDTQ--LFHIINSIHQYDSSLL 141 + + + A+ L++ L D + +ED++ L Q LFH+ N + LL Sbjct: 63 HDTGALILA--ARDLEAATNLPDAAH-IAIEDVEHLGNPAAQEYLFHLHNHLKNTGGRLL 119 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 +T+ W + LPDL SR++A T V I PDD L VI K+FADRQ+ + AY+ Sbjct: 120 LTSDRRAQDWPITLPDLASRMQATTSVYIEDPDDALLFAVISKLFADRQLSPAPTVTAYL 179 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 R++RS A+++V MD AL++ + R LA +VL + Sbjct: 180 AARIDRSYNAAQQIVAAMDAAALAQARELNRGLAGDVLAQ 219 >gi|254451021|ref|ZP_05064458.1| chromosomal replication initiator, DnaA [Octadecabacter antarcticus 238] gi|198265427|gb|EDY89697.1| chromosomal replication initiator, DnaA [Octadecabacter antarcticus 238] Length = 230 Score = 115 bits (287), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 70/215 (32%), Positives = 115/215 (53%), Gaps = 3/215 (1%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 Q+ F P + + D V A A L+ + +W + + ++GP+GSGK+ LA +++ Sbjct: 10 RQMAFDLPTNVRLGAADFFVSDANTLAYVLMQTPQTWSNNNLAIIGPAGSGKTHLARVFA 69 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ-LFHIINSIHQYDSSLLMTA 144 +S +T + D+ L ++ V+LED D L + + LFH+ N++ + LL+T+ Sbjct: 70 AQSGATIINAKDVRADTDLPNSN--VVLEDGDALRTDGEEWLFHVYNALSRAGFFLLLTS 127 Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 R P W + LPDL SRL T V I PDD L V++K FADRQ+ A++++ Sbjct: 128 RLPPARWDIALPDLASRLSTITSVTIDDPDDPLLTAVLLKHFADRQLAPTPNAVAFLMKH 187 Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + RS ++VD +D AL++ +TR VL Sbjct: 188 LPRSFNAVRRIVDTLDREALAQSKPLTRPFVRAVL 222 >gi|148284485|ref|YP_001248575.1| hypothetical protein OTBS_0856 [Orientia tsutsugamushi str. Boryong] gi|146739924|emb|CAM79922.1| conserved hypothetical protein [Orientia tsutsugamushi str. Boryong] Length = 216 Score = 114 bits (286), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 118/223 (52%), Gaps = 17/223 (7%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPS-WP----SRVVILVGPSGSGKSCLA 81 Q +FP +D +V S+ A +LI +WPS W SR +++ GP+ SGK+ LA Sbjct: 2 QHTINFPNNSKFLEEDYIVASSNFDAYQLIKNWPSMWGITPYSRSLLVCGPASSGKTYLA 61 Query: 82 NIWSDKSRSTRFSN--IAKSLDSI--LIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYD 137 NIW R++N S D+I T+ ++EDID ++D +L HI N +H+ + Sbjct: 62 NIWQ------RYANAVFMSSSDNIDQFYQTKPSFIIEDIDKTHWSDKKLLHIFNILHENN 115 Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L++T P ++ LPDL SRL A +K+ PDD+ ++ V++K F++R + + ++ Sbjct: 116 KFLMLTCSMHPTNF--ILPDLTSRLSAVLTIKLHRPDDEMMKIVLMKAFSERSLKVSNEI 173 Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 Y+ R+ R + V +D +L IT L E+LK Sbjct: 174 INYLSSRLTREFSIIHETVKLIDKYSLEHKRNITIPLLKELLK 216 >gi|114569799|ref|YP_756479.1| regulatory inactivation of DnaA Hda protein [Maricaulis maris MCS10] gi|114340261|gb|ABI65541.1| regulatory inactivation of DnaA Hda protein [Maricaulis maris MCS10] Length = 230 Score = 114 bits (286), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 68/181 (37%), Positives = 103/181 (56%), Gaps = 6/181 (3%) Query: 62 WPSRVVILVGPSGSGKSCLANIWSDKSRSTRF--SNIAKSLDSILIDTRKPVLLEDIDLL 119 WP V+ L+GP G+GKS LA IW+ + ++ S + L ++ D +++ED+D Sbjct: 43 WPRNVMALIGPEGAGKSHLAAIWAGRQQALVLPASTLGDRLAALEPDCA--MVVEDVDQ- 99 Query: 120 DFNDTQLFHIINSIHQYD-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178 +D LFH+ N + +LL+TART P W V +PDL SRL+A V + DD L Sbjct: 100 GVDDDALFHLFNRAAEGAIPALLLTARTRPAHWTVSVPDLVSRLRALVHVDLHEADDVLL 159 Query: 179 EKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238 +V+ K ADR + + Y++ RMERS+ L ++MD LAL + ITR++A E+ Sbjct: 160 TRVLEKQLADRGAPVRPGVIDYLLPRMERSVAAVRILAERMDKLALVKKTPITRAIAREI 219 Query: 239 L 239 L Sbjct: 220 L 220 >gi|310815333|ref|YP_003963297.1| DnaA-like protein [Ketogulonicigenium vulgare Y25] gi|308754068|gb|ADO41997.1| DnaA-like protein [Ketogulonicigenium vulgare Y25] Length = 223 Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 68/215 (31%), Positives = 110/215 (51%), Gaps = 2/215 (0%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 +QL F P ++ D +V A E A ++ P WP + L+G G+GK+ LA +W Sbjct: 3 QQLSFDLPIRPSLAAGDYVVSEANEAAYVMLCEEP-WPINKLALIGAPGAGKTHLARVWQ 61 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN-DTQLFHIINSIHQYDSSLLMTA 144 + + L +++EDI+ L + +FH+ N + LL+T+ Sbjct: 62 AQEGGHVWQAGGLDPQGGLPPDGANLVIEDIEHLPRRAEEYVFHVHNHLMNTGGHLLVTS 121 Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 P W + LPDL SR++A VV I PD+ + V+ K+FADRQ+ + Y+V R Sbjct: 122 DRGPGDWAIRLPDLASRMQAMAVVPIGDPDEWLMTAVLAKLFADRQLVPTPDVLPYLVSR 181 Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + RSL A ++V +MD AL++ + R +A +VL Sbjct: 182 LPRSLAVAAEVVAQMDAAALAQRRPLNRPMARQVL 216 >gi|302383321|ref|YP_003819144.1| DnaA-related protein [Brevundimonas subvibrioides ATCC 15264] gi|302193949|gb|ADL01521.1| DnaA-related protein [Brevundimonas subvibrioides ATCC 15264] Length = 232 Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 67/191 (35%), Positives = 103/191 (53%), Gaps = 6/191 (3%) Query: 52 AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV 111 AV + +WP+ RV+ L GP+G GKS LA+ W+++ + + +L L +PV Sbjct: 35 AVDALAAWPNAAGRVMALCGPAGCGKSHLASAWAERVGAIPLNGAEAALTDPLELEGRPV 94 Query: 112 LLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 LL+ D +D LFH+IN +LLM +R P W V +PDL SRL A VV + Sbjct: 95 LLDIAQ--DADDETLFHLINLAQHDGGALLMVSRPSPRRWAVQVPDLRSRLDAVRVVAME 152 Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231 PDD + ++ FA+R I + Y+V R++RS A +V ++D+ IT Sbjct: 153 APDDAVMSAILAARFAERSITPGDGVIDYLVLRIDRSAEAAAGIVARLDD----EHRPIT 208 Query: 232 RSLAAEVLKET 242 R+LA +VL+ + Sbjct: 209 RALARQVLEAS 219 >gi|189184534|ref|YP_001938319.1| hypothetical protein OTT_1627 [Orientia tsutsugamushi str. Ikeda] gi|189181305|dbj|BAG41085.1| DnaA homologue Had protein [Orientia tsutsugamushi str. Ikeda] Length = 216 Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 115/223 (51%), Gaps = 17/223 (7%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPS-WP----SRVVILVGPSGSGKSCLA 81 Q +FP +D +V S+ A +LI +WPS W S+ +++ GP SGK+ LA Sbjct: 2 QHTINFPNNSKYLEEDYIVTSSNFDAYQLIKNWPSMWGITPYSKSLLVCGPPSSGKTYLA 61 Query: 82 NIWSDKSRSTRFSN--IAKSLDSI--LIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYD 137 NIW R++N S D+I T+ ++EDID + D +L HI N +H+ + Sbjct: 62 NIWQ------RYANAVFMSSSDNIDQFYQTKPSFIIEDIDKTHWTDKKLLHIFNILHENN 115 Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L++T P ++ LPDL SRL A +K+ PDD+ ++ V++K F++R + + ++ Sbjct: 116 KFLMLTCSMHPTNF--ILPDLASRLSAVLTIKLHRPDDEMMKIVLMKAFSERSLKVSTEI 173 Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 Y+ R+ R V +D +L IT L E+LK Sbjct: 174 INYLSSRLTREFSIIHDTVKLIDKYSLEHKRNITIPLLKELLK 216 >gi|83311942|ref|YP_422206.1| DNA replication initiation ATPase [Magnetospirillum magneticum AMB-1] gi|82946783|dbj|BAE51647.1| ATPase involved in DNA replication initiation [Magnetospirillum magneticum AMB-1] Length = 231 Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 72/218 (33%), Positives = 118/218 (54%), Gaps = 2/218 (0%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 E QL +F ++ DD LV +A + + WP +L GP+ SGK+ LA+++ Sbjct: 3 EAQLPLAFGHVPSLAADDFLVAPCNAEAHAWVGAPGRWPGPASVLCGPAQSGKTHLAHLF 62 Query: 85 S--DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLM 142 + R + + + L+++ +++ED D ++ LFH+IN + LL+ Sbjct: 63 ARDGGGRLVSAAEVTEGSSRPLLESVPVLVVEDCDRGPLDEVGLFHLINQGRELGRLLLL 122 Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 TAR P +W V LPDL SRL A V I PDD L ++VK+F DRQ+ I + + +++ Sbjct: 123 TARLPPATWAVRLPDLRSRLLAMPVAAIGAPDDALLAALLVKLFDDRQLRIGEDVVHFLI 182 Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 RMERS ++V+++DN AL+ +T LA +L+ Sbjct: 183 GRMERSFAACARMVERLDNAALASRRAVTVPLARRILE 220 >gi|167646514|ref|YP_001684177.1| DnaA-like protein [Caulobacter sp. K31] gi|167348944|gb|ABZ71679.1| DnaA-related protein [Caulobacter sp. K31] Length = 233 Score = 108 bits (269), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 117/226 (51%), Gaps = 16/226 (7%) Query: 24 KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI 83 ++ +L + P C R+ QA+ +D+WP+WP + LVGP+G+GK+ LA Sbjct: 3 RQFRLPLTTPPCW--DRESFASSPTNAQALAGLDAWPAWPDGRLALVGPAGTGKTHLARD 60 Query: 84 WSDKSRSTRFSNIAKSLDSILID----TRKPVLLEDID------LLDFNDTQLFHIINSI 133 W+ ++ + A +L+ +D +P+L+ED D L+D D LFH+IN Sbjct: 61 WARRAGAVVIE--AATLNHAPLDLASLRGRPLLVEDADRRADGDLVD--DETLFHLINMA 116 Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193 SLL+T R PV+W +PDL SRL A TV +I PDD LE V+ + F I Sbjct: 117 GVDGGSLLLTGRLAPVAWEAAVPDLRSRLNALTVARIVEPDDIVLEAVLRRGFEAAGIRP 176 Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 L Y++ R+ RS A V +D A ++G + ++LA VL Sbjct: 177 TADLYPYLMARLPRSAPAALAAVAALDEAAAAQGREVNKALALAVL 222 >gi|294084193|ref|YP_003550951.1| hypothetical protein SAR116_0624 [Candidatus Puniceispirillum marinum IMCC1322] gi|292663766|gb|ADE38867.1| hypothetical protein SAR116_0624 [Candidatus Puniceispirillum marinum IMCC1322] Length = 228 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 69/215 (32%), Positives = 114/215 (53%), Gaps = 11/215 (5%) Query: 40 RDDLLVHSAIEQAVRLIDSWPSWPSRVVIL--VGPSGSGKSCLANIWSDKSRSTRFSNIA 97 RD+ + ++ + A ID WP WP ++ L VG GSGKS LA +W +++ S S Sbjct: 16 RDNFFISASNQLAADWIDRWPDWPGQMQALNIVGEPGSGKSHLAAVWQEQTGSVSLSKAD 75 Query: 98 KSLDSILIDTRKPV---LLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVS---W 151 + L++ +L+++ + ++ LFH +N+I SLL+ + + P++ W Sbjct: 76 ADMVHRLMEKNAEAPCFILDNLSAENSDEEALFHFLNAIKSVQGSLLILS-SMPIALMNW 134 Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211 L DL SRLKA V +I LPDD L ++ K FA+RQ+ + YIV RM+RS Sbjct: 135 K--LADLMSRLKAINVAQIELPDDMLLFALLEKYFAERQLVAPHNMLHYIVSRMDRSFSA 192 Query: 212 AEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 ++ +D AL+ ++ +LA +VL + + D Sbjct: 193 VHQIGAALDREALASKKSLSVNLARDVLHKQLEID 227 >gi|330993500|ref|ZP_08317435.1| Chromosomal replication initiator protein dnaA [Gluconacetobacter sp. SXCC-1] gi|329759530|gb|EGG76039.1| Chromosomal replication initiator protein dnaA [Gluconacetobacter sp. SXCC-1] Length = 255 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 67/224 (29%), Positives = 117/224 (52%), Gaps = 11/224 (4%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVR--LIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 QL F + D V SA A R L+ P WP R + L GP+G+GK+ + +IW Sbjct: 20 QLVLPFAHTPRFAASDF-VFSASNAAARSWLLGPTP-WPERRLALWGPAGTGKTHMLDIW 77 Query: 85 SDKSRSTRFSNIAKSLDSILI-----DTRKPVLLEDIDLLDF--NDTQLFHIINSIHQYD 137 + + + + + + R+P + +D D ++ L H++NS + Sbjct: 78 ARRHEALLLHGGSLTHAHVAALFAARGGRRPPMAMALDGADMCGDEHALLHLLNSAREQG 137 Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 ++L+ ART P W V LPDL SRL+A V + P D L +++++ A+RQI + + + Sbjct: 138 MAVLLGARTPPARWPVILPDLASRLRATMAVAVGQPGDGLLRVLLLRLLAERQIVVAQPV 197 Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++++R+ R+ + V ++D+ AL+ G +TR+LAA VL + Sbjct: 198 VEWLLRRLPRTARAMQAAVRRLDHAALATGRPVTRALAASVLSD 241 >gi|103487240|ref|YP_616801.1| ATPase involved in DNA replication initiation [Sphingopyxis alaskensis RB2256] gi|98977317|gb|ABF53468.1| ATPase involved in DNA replication initiation [Sphingopyxis alaskensis RB2256] Length = 220 Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 64/203 (31%), Positives = 95/203 (46%), Gaps = 22/203 (10%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNI 96 G + L++ ++ AVR + +WP R +L GP GSG+S + ++ Sbjct: 20 GANDGPLVIGTSNADAVRYLRHVATWPVRTAVLTGPRGSGRSLMGRLF------------ 67 Query: 97 AKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156 A+ +ID V + +LFH N+ S LL+ A P W V LP Sbjct: 68 ARDTGGRVIDGHTSV----------GEEELFHAWNAAQASGSPLLVIADAPPAEWNVALP 117 Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216 DL SRL A V+ I PDD +I +FA R + + +A+YIV RMERS ++V Sbjct: 118 DLRSRLAAVPVLVIGEPDDCLARDLIEALFAQRGVALAPGVASYIVPRMERSYAMIHRIV 177 Query: 217 DKMDNLALSRGMGITRSLAAEVL 239 +D +L +G + LA E L Sbjct: 178 AALDAASLEQGRRLGVRLARETL 200 >gi|162147795|ref|YP_001602256.1| DNA replication [Gluconacetobacter diazotrophicus PAl 5] gi|209542417|ref|YP_002274646.1| Chromosomal replication initiator DnaA [Gluconacetobacter diazotrophicus PAl 5] gi|161786372|emb|CAP55954.1| putative DNA replication [Gluconacetobacter diazotrophicus PAl 5] gi|209530094|gb|ACI50031.1| Chromosomal replication initiator DnaA [Gluconacetobacter diazotrophicus PAl 5] Length = 255 Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 59/233 (25%), Positives = 118/233 (50%), Gaps = 7/233 (3%) Query: 15 KQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSG 74 Q P++ QL F +R D + + A + P+WP + L G +G Sbjct: 8 NQDETAPRDSFGQLVLPFAHRTRHARADFVAAPSNGMARAWLLGAPAWPEHRLALWGAAG 67 Query: 75 SGKSCLANIWSDKSRSTRFSN---IAKSLDSILIDTR---KPVLLEDIDLLDFNDTQLFH 128 +GK+ L +IW+ + + + +L + D + V ++D D ++ + L H Sbjct: 68 AGKTHLLDIWAQERGAVLLTGADLTQATLGRLFDDAPDMLRAVAVDDADRVE-DQRALLH 126 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++N+ ++ ++++ AR P W V LPDL SRL+A +++ P+D L ++++ AD Sbjct: 127 LLNAAREHRVAVVLAARLSPARWPVVLPDLASRLRATMAIELRQPEDTLLRILLLRHLAD 186 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 RQI + + + ++++R+ R+ + ++D+ L+ G +TR+LA VL + Sbjct: 187 RQIVVSQPVTEWLLRRLPRTASAIREAAIRLDHAGLAAGRRVTRALALSVLHD 239 >gi|329850486|ref|ZP_08265331.1| bacterial dnaA family protein [Asticcacaulis biprosthecum C19] gi|328840801|gb|EGF90372.1| bacterial dnaA family protein [Asticcacaulis biprosthecum C19] Length = 223 Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 61/212 (28%), Positives = 114/212 (53%), Gaps = 19/212 (8%) Query: 39 SRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS---- 94 SRD ++A++ + ++ +W S +IL GPSG+GKS LA+I++ ++ + + Sbjct: 16 SRDSFATNAALQAVLDVLLVPQAWISPHLILQGPSGTGKSHLAHIFAAETGAHLLTADDT 75 Query: 95 ---NIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSW 151 ++A S ++D D ++ LFH+ N + + L++T + P+ W Sbjct: 76 YQLDLAALTGSYVVD----------DAETASEEALFHLSNYVQKSGQHLVLTTKIQPIIW 125 Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211 LPDL SRL+A ++ + PD+D L V+ K+FA R I AY+ R+ERS+ Sbjct: 126 QTALPDLGSRLRAMRLMVLPEPDEDLLAAVLKKLFAQRFIQPSDDTLAYLSTRVERSVPA 185 Query: 212 AEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 A+K+V ++++ A G ++L + L++++ Sbjct: 186 AQKIVTELEHHA--NGRAFNKTLIRDFLEQSE 215 >gi|16125955|ref|NP_420519.1| DnaA-like protein [Caulobacter crescentus CB15] gi|221234720|ref|YP_002517156.1| DnaA-like protein [Caulobacter crescentus NA1000] gi|13423125|gb|AAK23687.1| DnaA-related protein [Caulobacter crescentus CB15] gi|220963892|gb|ACL95248.1| chromosome replication regulator protein HdaA [Caulobacter crescentus NA1000] Length = 230 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 70/209 (33%), Positives = 107/209 (51%), Gaps = 8/209 (3%) Query: 39 SRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNI-- 96 R+D V + +AV +D+WP W ++LVGP+G GKS LA W+ + + Sbjct: 16 GREDFAVSPSNGEAVARLDAWPDWAEGRLVLVGPAGCGKSHLARAWAAAAGAVVVEAANP 75 Query: 97 -AKSLDSILIDTRKPVLLEDIDL----LDFNDTQLFHIINSIHQYDSSLLMTARTFPVSW 151 A S+D + R VL+ED D +D LFHI+N ++L+T RT P++W Sbjct: 76 DAASVDLSALRGRA-VLVEDADRRAQGAAVSDEALFHILNMAGVDGGTVLLTGRTAPLTW 134 Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211 + DL SRL A +V +I+ PDD LE V+ + FA + L Y++ R+ RS Sbjct: 135 SAEVADLRSRLNALSVAEIAEPDDAVLEAVLRRAFAAAWWKPEPDLYPYLLARLPRSAAE 194 Query: 212 AEKLVDKMDNLALSRGMGITRSLAAEVLK 240 A+ + A +T++LA EVL+ Sbjct: 195 AQAAAALLAEAAADGRRELTKALAREVLE 223 >gi|315500000|ref|YP_004088803.1| chromosomal replication initiator dnaa [Asticcacaulis excentricus CB 48] gi|315418012|gb|ADU14652.1| Chromosomal replication initiator DnaA [Asticcacaulis excentricus CB 48] Length = 221 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 99/183 (54%), Gaps = 10/183 (5%) Query: 62 WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 W + ++L GP+GSGK+ ++++++ + + A + DT ++++ D F Sbjct: 39 WLNPHLVLTGPAGSGKTHASHVFAETHGAHWLNPGAP-----VPDTATLFVVDEADT--F 91 Query: 122 NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 + LFH+ N D LL+ +R P W + +PD SRLKA V+ + PDD L+ V Sbjct: 92 DQEVLFHLYNRTAS-DGRLLLLSRQHPAQWRIRVPDFESRLKAMRVIDMPEPDDSLLKSV 150 Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + K+F R I + Y+ +RMERS+ A+K+V ++ A + G TRSLA + ++ Sbjct: 151 LKKLFEARVITPSDDVLEYLSRRMERSVAHAQKIVTGLE--AYANGRAFTRSLARQFIET 208 Query: 242 TQQ 244 ++ Sbjct: 209 SEN 211 >gi|258541973|ref|YP_003187406.1| chromosomal replication initiator protein DnaA-related protein [Acetobacter pasteurianus IFO 3283-01] gi|256633051|dbj|BAH99026.1| chromosomal replication initiator protein DnaA-related protein [Acetobacter pasteurianus IFO 3283-01] gi|256636108|dbj|BAI02077.1| chromosomal replication initiator protein DnaA-related protein [Acetobacter pasteurianus IFO 3283-03] gi|256639163|dbj|BAI05125.1| chromosomal replication initiator protein DnaA-related protein [Acetobacter pasteurianus IFO 3283-07] gi|256642217|dbj|BAI08172.1| chromosomal replication initiator protein DnaA-related protein [Acetobacter pasteurianus IFO 3283-22] gi|256645272|dbj|BAI11220.1| chromosomal replication initiator protein DnaA-related protein [Acetobacter pasteurianus IFO 3283-26] gi|256648327|dbj|BAI14268.1| chromosomal replication initiator protein DnaA-related protein [Acetobacter pasteurianus IFO 3283-32] gi|256651380|dbj|BAI17314.1| chromosomal replication initiator protein DnaA-related protein [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654371|dbj|BAI20298.1| chromosomal replication initiator protein DnaA-related protein [Acetobacter pasteurianus IFO 3283-12] Length = 255 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 116/238 (48%), Gaps = 20/238 (8%) Query: 16 QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLI---DSWPSWPSRVVILVGP 72 QK N+ EQ+ F R D + + A + ++ WP + L G Sbjct: 18 QKRQNEANEAEQIALPFAHRPRFGRSDFVAAPSNAAARAWVLDAEAAARWPEGRMALWGE 77 Query: 73 SGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL-ED-------IDLLDF--N 122 SG+GK+ L +IW+ R+ A ++ ++T + +L ED +D D N Sbjct: 78 SGTGKTHLLSIWAG-----RYG--APIMEGSRLNTHEAAMLFEDGGFRAAALDNADKVPN 130 Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 + L H+IN + +LLM AR P W V LPDL SRL+A V + ++ L +++ Sbjct: 131 ERDLLHLINLARERRVALLMAARRPPARWPVVLPDLASRLRATASVPLGPAEEGLLHRLL 190 Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 +++ A+RQI + ++ ++++R+ R V +D AL G ITR+LAA VL+ Sbjct: 191 LRLLAERQIVVGAQVTEWLLRRLPRRASAVRDCVAMLDQAALESGGRITRALAANVLE 248 >gi|71083424|ref|YP_266143.1| DNA replication initiation ATPase [Candidatus Pelagibacter ubique HTCC1062] gi|71062537|gb|AAZ21540.1| probable ATPase involved in DNA replication initiation [Candidatus Pelagibacter ubique HTCC1062] Length = 220 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 63/186 (33%), Positives = 93/186 (50%), Gaps = 8/186 (4%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL F DD V + A +I+ WP W + + G SGKS L NI+ Sbjct: 6 QLLLDFNYEQNFKDDDFYVGKSNFYAFEMINKWPKWEKNFLNINGEKFSGKSHLVNIFLK 65 Query: 87 KSRSTRFSNIAKSLDSILIDTRKP---VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMT 143 K R SL+ I + KP ++LED++L + N+ ++ + N I Q D+ L+ Sbjct: 66 KFNGIRID--VNSLNDENIKSIKPYQNIVLEDLNL-NINEKLIYSLFNIIDQ-DNKFLIV 121 Query: 144 ARTFPVS-WGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 P+S L DL SR K I PDD+ + +I+K +DRQI +DKKL +I+ Sbjct: 122 TSMKPISEINFKLEDLRSRTKNCLFANIQNPDDELMFALILKNLSDRQITLDKKLINFII 181 Query: 203 QRMERS 208 +R+ERS Sbjct: 182 KRIERS 187 >gi|91762153|ref|ZP_01264118.1| probable ATPase involved in DNA replication initiation [Candidatus Pelagibacter ubique HTCC1002] gi|91717955|gb|EAS84605.1| probable ATPase involved in DNA replication initiation [Candidatus Pelagibacter ubique HTCC1002] Length = 224 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 63/186 (33%), Positives = 93/186 (50%), Gaps = 8/186 (4%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL F DD V + A +I+ WP W + + G SGKS L NI+ Sbjct: 10 QLLLDFNYEQNFKDDDFYVGKSNFYAFEMINKWPKWEKNFLNINGEKFSGKSHLVNIFLK 69 Query: 87 KSRSTRFSNIAKSLDSILIDTRKP---VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMT 143 K R SL+ I + KP ++LED++L + N+ ++ + N I Q D+ L+ Sbjct: 70 KFNGIRID--VNSLNDENIKSIKPYQNIVLEDLNL-NINEKLIYSLFNIIDQ-DNKFLIV 125 Query: 144 ARTFPVS-WGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 P+S L DL SR K I PDD+ + +I+K +DRQI +DKKL +I+ Sbjct: 126 TSMKPISEINFELEDLRSRTKNCLFANIQNPDDELMFALILKNLSDRQITLDKKLINFII 185 Query: 203 QRMERS 208 +R+ERS Sbjct: 186 KRIERS 191 >gi|296282392|ref|ZP_06860390.1| ATPase [Citromicrobium bathyomarinum JL354] Length = 196 Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 70/209 (33%), Positives = 95/209 (45%), Gaps = 33/209 (15%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTR 92 P + I +L V A+ + R WP R IL G S SGKS L W Sbjct: 9 PASIVIGSANLAVVEALREPER-------WPFRTAILRGESRSGKSLLGR-W-------- 52 Query: 93 FSNIAKSLDSILIDTRKPVLLEDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSW 151 F++ L E ID D +T LFH N + ++LL+ P W Sbjct: 53 FAHAG--------------LGETIDPADAMEETALFHRWNRAQEEGTALLLIPEKAP--W 96 Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211 + LPDL SRL AA ++I PDDD + +IV A R + + + Y+V RM RS Sbjct: 97 EIALPDLRSRLGAALALEIGQPDDDMMRDLIVSHAARRGLMLGEDALTYVVPRMTRSFAA 156 Query: 212 AEKLVDKMDNLALSRGMGITRSLAAEVLK 240 AE+ V +D LAL R TR+L + L+ Sbjct: 157 AERFVAVLDRLALERQARPTRNLCRDALE 185 >gi|148552965|ref|YP_001260547.1| DNA replication initiation ATPase [Sphingomonas wittichii RW1] gi|148498155|gb|ABQ66409.1| ATPase involved in DNA replication initiation [Sphingomonas wittichii RW1] Length = 207 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 61/198 (30%), Positives = 93/198 (46%), Gaps = 22/198 (11%) Query: 42 DLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLD 101 D +V A AVR ++ W WP +L GP SG+S L I++ K+ RF + A + D Sbjct: 19 DFIVSEANSTAVRHLEHWSLWPVMATVLTGPRKSGRSLLGRIFAAKT-GGRFVDNADAQD 77 Query: 102 SILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161 + +LFH N+ LL+ A W + LPDL SR Sbjct: 78 ---------------------EEKLFHAWNAAQADRKPLLLAADLPSARWRIKLPDLRSR 116 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 L A+ V I PD + ++ K+ R + + ++ Y+ R+ERS V ++VD +D Sbjct: 117 LLASPHVAIEEPDFPLMLGLVEKLLHVRGLAVRPEVVRYVASRIERSYVGIGRIVDALDE 176 Query: 222 LALSRGMGITRSLAAEVL 239 AL+R IT ++A E L Sbjct: 177 AALARRRPITMAVAREAL 194 >gi|87198923|ref|YP_496180.1| ATPase [Novosphingobium aromaticivorans DSM 12444] gi|87134604|gb|ABD25346.1| ATPase [Novosphingobium aromaticivorans DSM 12444] Length = 204 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 61/212 (28%), Positives = 98/212 (46%), Gaps = 22/212 (10%) Query: 30 FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR 89 + P + +++ ++ A+ + S SWP R IL GP SGKS LA W +S Sbjct: 5 IALPLVTARGSETVIMGPSLVPAINALQSADSWPFRTAILAGPPRSGKSLLAR-WFAESG 63 Query: 90 STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPV 149 + + A SL + ++FH N LL+ P Sbjct: 64 AGDVVDGADSLP---------------------EDEVFHRWNRAQAEGRPLLLVCDRAPG 102 Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209 W + LPDL SRL AA +++I PDD+ + +I++ R + I + AY++ R+ERS Sbjct: 103 QWKIALPDLASRLGAALLIEIGPPDDELIAGLIMEHSMRRGLVIGDAVLAYLLPRVERSH 162 Query: 210 VFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 E L++ +D L+L R +T SL + + E Sbjct: 163 AGIELLIETLDRLSLERKSPVTISLVRDAIAE 194 >gi|297717796|gb|ADI50041.1| chromosomal replication initiator protein DnaA [Candidatus Odyssella thessalonicensis L13] Length = 217 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 64/225 (28%), Positives = 101/225 (44%), Gaps = 23/225 (10%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 +QL P L L++ +A + +WPSWP V++VG GSGK+ +A S Sbjct: 2 QQLAIPLPDQLVTDSSTLIIEAANRDVWAWLSAWPSWPLPQVVIVGAKGSGKTHMAKALS 61 Query: 86 DKSRSTRFSNIA---------KSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY 136 + R++ S A +S D ILID + + + LFH+ N ++ Sbjct: 62 AQQRASLISPSAVIHPPLALIQSADLILIDNYE----------QYGEDWLFHLYNLAKEH 111 Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196 ++ T P S+ + DL SRL++ ++I PDD K+ K +R + Sbjct: 112 HRQVVYFGHTTPASYSFKIHDLASRLRSLPCLEIQEPDDSLFRKLFRKELLNRGMVCGDD 171 Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + YI +R +RS LV +D L L + RSL +LKE Sbjct: 172 ILEYIYRRFDRSYATIHHLVKLIDTLTLVQ----QRSLTLPLLKE 212 >gi|332184913|ref|ZP_08386662.1| hypothetical protein SUS17_294 [Sphingomonas sp. S17] gi|332014637|gb|EGI56693.1| hypothetical protein SUS17_294 [Sphingomonas sp. S17] Length = 202 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 59/199 (29%), Positives = 93/199 (46%), Gaps = 22/199 (11%) Query: 41 DDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 D L+ + A R+++ W SWP+ IL GP SG+S LA I++ +S T Sbjct: 17 DAFLLTDSNRLAARMLEQWESWPTMAAILTGPRKSGRSLLARIFAARSNGT--------- 67 Query: 101 DSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 +ID D + Q+FH N+ LL+ A P W V LPDL S Sbjct: 68 ---IID----------DAERVPEVQIFHAWNTAQAERRPLLIVADAPPPRWSVKLPDLRS 114 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 RL +++ +I PDD+ + + +F R + L ++ R+ERS + + VD +D Sbjct: 115 RLANSSLAEIGAPDDELVAALFEHLFERRGLDARPDLIEWLTARVERSHLSVIRAVDMLD 174 Query: 221 NLALSRGMGITRSLAAEVL 239 A+ R ++ +LA L Sbjct: 175 QGAMERRARLSIALARSTL 193 >gi|329114266|ref|ZP_08243028.1| Hypothetical protein APO_1054 [Acetobacter pomorum DM001] gi|326696342|gb|EGE48021.1| Hypothetical protein APO_1054 [Acetobacter pomorum DM001] Length = 255 Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 69/238 (28%), Positives = 114/238 (47%), Gaps = 20/238 (8%) Query: 16 QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLI---DSWPSWPSRVVILVGP 72 QK + EQ+ F R D + + A + ++ WP + L G Sbjct: 18 QKRQNEATEAEQIALPFAHRPRFGRSDFVAAPSNAAARAWVLDAEAAARWPEGRMALWGE 77 Query: 73 SGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL-ED-------IDLLDF--N 122 SG+GK+ L +IW+ R+ A ++ ++T + +L ED +D D N Sbjct: 78 SGTGKTHLLSIWAG-----RYG--APIMEGSRLNTHEAAMLFEDGGFRAAALDNADKVPN 130 Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 + L H+IN + +LLM AR P W V LPDL SRL+A V + ++ L +++ Sbjct: 131 ERDLLHLINLARERRVALLMAARRPPARWPVVLPDLASRLRATASVPLGPAEEGLLHRLL 190 Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 +++ A+RQI + ++ ++++R+ R V +D AL G ITR LAA VL+ Sbjct: 191 LRLLAERQIVVGAQVTEWLLRRLPRRASAMRDCVAMLDQAALESGGRITRDLAANVLE 248 >gi|262277378|ref|ZP_06055171.1| probable ATPase involved in DNA replication initiation [alpha proteobacterium HIMB114] gi|262224481|gb|EEY74940.1| probable ATPase involved in DNA replication initiation [alpha proteobacterium HIMB114] Length = 218 Score = 88.2 bits (217), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 108/205 (52%), Gaps = 8/205 (3%) Query: 41 DDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN---IA 97 ++L+ ++ + +D +P+W ++++ +VG SGKS + ++ K++ SN Sbjct: 18 ENLIRDTSNSNVLNFLDKFPNWDTKLINIVGEKKSGKSFILQLFRKKNQFNYISNKEDFE 77 Query: 98 KSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 + D + + K +L D N+ + F +IN + L++++R + L D Sbjct: 78 RKYDELFL-VDKLIL----DGFQINEDKFFSLINHFILHKKYLIISSREPLTILEIKLLD 132 Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 L SRLK +++I P DD + +I+K F+D QI I K L YIV++++RS EK + Sbjct: 133 LKSRLKEFLLIEIQNPSDDLIYSLILKYFSDNQIVIKKDLVEYIVKKIDRSYSSIEKFLI 192 Query: 218 KMDNLALSRGMGITRSLAAEVLKET 242 K+++ ++ + I L EVL ET Sbjct: 193 KLNDQSIIKKKKIDYKLINEVLNET 217 >gi|295689652|ref|YP_003593345.1| chromosomal replication initiator DnaA [Caulobacter segnis ATCC 21756] gi|295431555|gb|ADG10727.1| Chromosomal replication initiator DnaA [Caulobacter segnis ATCC 21756] Length = 229 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 52/155 (33%), Positives = 76/155 (49%), Gaps = 4/155 (2%) Query: 39 SRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAK 98 +R+D V + AV +++WP+WP + L+GP+G GK+ LA W+ + Sbjct: 16 AREDFAVSPSNADAVARVEAWPAWPEGRLALIGPAGVGKTHLARAWAAAHDAVVVEATGD 75 Query: 99 SLDSILIDTRKPVLLEDIDL----LDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + K +L+ED D +D LFHI+N ++L+T R PV W Sbjct: 76 DAPDLPALRGKAILVEDADRRAEGTALSDEALFHILNMAGVDGGTVLLTGRAAPVGWAAN 135 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 +PDL SRL A V I PDD LE V+ + F R Sbjct: 136 VPDLRSRLNALCVASIEAPDDVVLEAVLRRAFEHR 170 >gi|15892902|ref|NP_360616.1| hypothetical protein RC0979 [Rickettsia conorii str. Malish 7] gi|229586980|ref|YP_002845481.1| hypothetical protein RAF_ORF0880 [Rickettsia africae ESF-5] gi|15620092|gb|AAL03517.1| unknown [Rickettsia conorii str. Malish 7] gi|228022030|gb|ACP53738.1| DnaA-like protein [Rickettsia africae ESF-5] Length = 222 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 62/224 (27%), Positives = 111/224 (49%), Gaps = 11/224 (4%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW----PSRVVILV-GPSGSGKSCL 80 +Q F F D+ +V S+ +QA +I +W P + +L+ GPS SGK+ L Sbjct: 2 QQYIFRFTTSSKYHPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYL 61 Query: 81 ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140 IW + S + +I + + + ++EDI+ ++ + L HI N I++ L Sbjct: 62 TKIWQNLSNAYIIKDIF--FNEEISEKYNAFIIEDIE--NWQEPTLLHIFNIINEKQKYL 117 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L+TA S LPDL SR+K+ + ++ PDD+ ++ +I K FA + I +++ + Sbjct: 118 LLTAS--DKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFAISSVTISRQIIDF 175 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 ++ + R +++D ++ AL IT SL EVL + Sbjct: 176 LLVNLPREYSKIIEILDNINYFALISKRKITTSLVKEVLNKYNH 219 >gi|239948341|ref|ZP_04700094.1| chromosomal replication initiator protein DnaA [Rickettsia endosymbiont of Ixodes scapularis] gi|239922617|gb|EER22641.1| chromosomal replication initiator protein DnaA [Rickettsia endosymbiont of Ixodes scapularis] Length = 222 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 60/219 (27%), Positives = 114/219 (52%), Gaps = 11/219 (5%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW----PSRVVILV-GPSGSGKSCL 80 +Q F F D+ +V S+ +QA +I +W P + +L+ GPS SGK+ L Sbjct: 2 QQYIFRFTTSNKYHPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYL 61 Query: 81 ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140 IW + S + +I S + +++ ++EDI+ ++ + +L HI N I++ L Sbjct: 62 TKIWQNLSNAYIIKDIFFSEE--ILEKYNAFIIEDIE--NWQEPELLHIFNIINEKQKYL 117 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L+T+ S LPDL SR+K+ + ++ PDD+ ++ +I K F+ + I +++ + Sbjct: 118 LLTSSD--KSRNFTLPDLSSRIKSVLSIVLNSPDDELIKILIFKHFSISSVTISRQIIDF 175 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 ++ + R ++++ +++ AL IT SL EVL Sbjct: 176 LLVNLPREYSKIIEILENINHFALISKRKITTSLVKEVL 214 >gi|238651086|ref|YP_002916944.1| hypothetical protein RPR_07330 [Rickettsia peacockii str. Rustic] gi|238625184|gb|ACR47890.1| hypothetical protein RPR_07330 [Rickettsia peacockii str. Rustic] Length = 222 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 62/224 (27%), Positives = 111/224 (49%), Gaps = 11/224 (4%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW----PSRVVILV-GPSGSGKSCL 80 +Q F F D+ +V S+ +QA +I +W P + +L+ GPS SGK+ L Sbjct: 2 QQYIFRFTTSSKYHPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYL 61 Query: 81 ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140 IW + S + +I + + + ++EDI+ ++ + L HI N I++ L Sbjct: 62 TKIWQNLSNAYIIKDIF--FNEEISEKYNAFIIEDIE--NWQEPTLLHIFNIINEKQKYL 117 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L+TA S LPDL SR+K+ + ++ PDD+ ++ +I K FA + I +++ + Sbjct: 118 LLTAS--DKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFAISSVTISRQIIDF 175 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 ++ + R +++D ++ AL IT SL EVL + Sbjct: 176 LLVNLPREYSKIIEILDNINYFALIAKRKITTSLVKEVLNKYNH 219 >gi|34581398|ref|ZP_00142878.1| hypothetical protein [Rickettsia sibirica 246] gi|28262783|gb|EAA26287.1| unknown [Rickettsia sibirica 246] Length = 222 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 62/224 (27%), Positives = 110/224 (49%), Gaps = 11/224 (4%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW----PSRVVILV-GPSGSGKSCL 80 +Q F F D+ +V S+ QA +I +W P + +L+ GPS SGK+ L Sbjct: 2 QQYIFRFTTSSKYHPDEFIVSSSNNQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYL 61 Query: 81 ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140 IW + S + +I + + + ++EDI+ ++ + L HI N I++ L Sbjct: 62 TKIWQNLSNAYIIKDIF--FNEEISEKYNAFIIEDIE--NWQEPTLLHIFNIINEKQKYL 117 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L+TA S LPDL SR+K+ + ++ PDD+ ++ +I K FA + I +++ + Sbjct: 118 LLTAS--DKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFAISSVTISRQIIDF 175 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 ++ + R +++D ++ AL IT SL EVL + Sbjct: 176 LLVNLPREYSKIIEILDNINYFALISKRKITTSLVKEVLNKYNH 219 >gi|157803499|ref|YP_001492048.1| hypothetical protein A1E_01590 [Rickettsia canadensis str. McKiel] gi|157784762|gb|ABV73263.1| hypothetical protein A1E_01590 [Rickettsia canadensis str. McKiel] Length = 222 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 59/225 (26%), Positives = 115/225 (51%), Gaps = 11/225 (4%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW----PSRVVILV-GPSGSGKSCL 80 +Q F F D+ +V S+ +QA +I +W P + +L+ GPS SGK+ L Sbjct: 2 QQYIFRFTTPNKYHPDEFIVSSSNDQAYNIIQNWQHRFGVNPYKFTLLIKGPSSSGKTYL 61 Query: 81 ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140 IW + S + +I + +++ ++EDI+ ++ + L +I N I++ L Sbjct: 62 TKIWQNLSNAYIIKDIF--FNEEILEQYNAFIIEDIE--NWQEPALLYIFNIINEKRKYL 117 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L+T+ F S LPDL SR+K+ + ++ PDD+ ++ +I K F+ + I +++ + Sbjct: 118 LLTS--FDKSKNFALPDLSSRIKSVLSIVLNSPDDELIKVLIFKHFSISSVIISRQIIDF 175 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 ++ + R ++++ ++ +AL+ IT SL EVL + Sbjct: 176 LLVNLPREHSKIIEILENINQIALTSKRKITTSLVKEVLNKYSHT 220 >gi|157964779|ref|YP_001499603.1| hypothetical protein RMA_1009 [Rickettsia massiliae MTU5] gi|157844555|gb|ABV85056.1| DnaA-like protein [Rickettsia massiliae MTU5] Length = 227 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 62/224 (27%), Positives = 111/224 (49%), Gaps = 11/224 (4%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW----PSRVVILV-GPSGSGKSCL 80 +Q F F D+ +V S+ +QA +I +W P + +L+ GPS SGK+ L Sbjct: 7 QQYIFRFTTSNKYHPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYL 66 Query: 81 ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140 IW + S + +I + +++ ++EDI+ ++ + L HI N I++ L Sbjct: 67 TKIWQNLSNAYIIKDIF--FNEEILEKYNAFIIEDIE--NWQEPTLLHIFNIINEKQKYL 122 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L+TA S LPDL SR+K+ + ++ PDD+ ++ +I K FA + I ++ + Sbjct: 123 LLTAS--DKSRNFTLPDLSSRIKSVLSMLLNSPDDELIKILIFKHFAISSVTISGQIIDF 180 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 ++ + R +++D ++ AL IT SL EVL + Sbjct: 181 LLVNLPREYSKIIEILDNINYFALISKRKITTSLVKEVLNKYNH 224 >gi|94497909|ref|ZP_01304474.1| ATPase [Sphingomonas sp. SKA58] gi|94422637|gb|EAT07673.1| ATPase [Sphingomonas sp. SKA58] Length = 216 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 61/216 (28%), Positives = 94/216 (43%), Gaps = 22/216 (10%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 Q+ F G D LV A AV ++ W WP + +L GP SG+S LA Sbjct: 3 QISLPFEGHEGRGEGDFLVSDANRVAVAYLERWRDWPLSIAVLTGPPRSGRSTLAR---- 58 Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD--FNDTQLFHIINSIHQYDSSLLMTA 144 +F+ ++ +++D D +D +LFH N+ LL+ Sbjct: 59 -----QFARMSGG-----------DVIDDAHEGDRPLDDHRLFHAWNAAQTEHRPLLLVG 102 Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 + P +W V LPDL SRL A V I PD+ +I + F L ++ +R Sbjct: 103 QAPPATWPVTLPDLRSRLAAVPHVGIDAPDEMLTRALIQRSFDAAGAAYSADLPDWLARR 162 Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 ++RS E + +D ALS G I+ ++A E L+ Sbjct: 163 IDRSYAAIETITRLLDRAALSSGRKISVAMAKEALQ 198 >gi|157828827|ref|YP_001495069.1| hypothetical protein A1G_05380 [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933553|ref|YP_001650342.1| hypothetical protein RrIowa_1158 [Rickettsia rickettsii str. Iowa] gi|157801308|gb|ABV76561.1| hypothetical protein A1G_05380 [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908640|gb|ABY72936.1| DnaA-related protein [Rickettsia rickettsii str. Iowa] Length = 222 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 61/224 (27%), Positives = 111/224 (49%), Gaps = 11/224 (4%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW----PSRVVILV-GPSGSGKSCL 80 +Q F F D+ +V S+ +QA +I +W P + +L+ GPS SGK+ L Sbjct: 2 QQYIFRFTTSSKYHPDEFIVSSSNDQAYNIIKNWQCGFGINPYKFTLLIKGPSSSGKTYL 61 Query: 81 ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140 IW + S + +I + + + +++DI+ ++ + L HI N I++ L Sbjct: 62 TKIWQNLSNAYIIKDIF--FNEEISEKYNAFIIDDIE--NWQEPTLLHIFNIINEKQKYL 117 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L+TA S LPDL SR+K+ + ++ PDD+ ++ +I K FA + I +++ + Sbjct: 118 LLTAS--DKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFAIASVTISRQIIDF 175 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 ++ + R +++D ++ AL IT SL EVL + Sbjct: 176 LLVNLPREYSKIIEILDNINYFALISKRKITTSLVKEVLNKYNH 219 >gi|190571370|ref|YP_001975728.1| chromosomal DNA replication initiator-related protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018769|ref|ZP_03334577.1| chromosomal DNA replication initiator-related protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357642|emb|CAQ55086.1| chromosomal DNA replication initiator-related protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995720|gb|EEB56360.1| chromosomal DNA replication initiator-related protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 211 Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 60/191 (31%), Positives = 99/191 (51%), Gaps = 26/191 (13%) Query: 61 SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV--------- 111 SW + +IL GP+ SGK+ LA+IW K+ D+I ID V Sbjct: 36 SW--KCLILFGPNSSGKTHLAHIWQSKN------------DAIFIDVNNFVSEMRYSDAF 81 Query: 112 LLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +LED+ + ++ L H N + + D LL+T+ P L DL SR+ + VKI Sbjct: 82 ILEDVQNIK-DEEMLLHCYNYMKENDKRLLITSSILPKKLNFKLKDLSSRILSTISVKIL 140 Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231 ++ L +++K F+D+Q+ ID K+ YI+ R+ERS K+++K+DN ++ G +T Sbjct: 141 PASEELLRIMLIKQFSDKQLKIDLKVIDYILARIERSFHSINKVIEKIDNESI--GSNVT 198 Query: 232 RSLAAEVLKET 242 +LK++ Sbjct: 199 IPFINTLLKKS 209 >gi|148261518|ref|YP_001235645.1| ATPase involved in DNA replication initiation-like protein [Acidiphilium cryptum JF-5] gi|146403199|gb|ABQ31726.1| ATPase involved in DNA replication initiation-like protein [Acidiphilium cryptum JF-5] Length = 247 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 93/180 (51%), Gaps = 3/180 (1%) Query: 62 WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 W +R ++L G +GSGKS LA IW+ ++ +TR A L + P+L+EDID Sbjct: 45 WVNRRLVLWGEAGSGKSHLAWIWAARTCATRLD--AARLRTPASPGGAPLLIEDIDAAAA 102 Query: 122 NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 + + Q +LMT RT P V PDL SRL+A+ ++I + + L+ + Sbjct: 103 PLALFATLERAT-QAAVPVLMTCRTPPARLPVEPPDLASRLRASLTIRIEPAEPELLDAL 161 Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + ++ A RQ+ + L +++ R+ R + + ++D AL+ G +R LA +L E Sbjct: 162 LHRLAAARQMSLPPALHQFLLTRLPRRPAVLREAIARLDRYALALGTAPSRRLAERLLDE 221 >gi|58584988|ref|YP_198561.1| DNA replication initiation ATPase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419304|gb|AAW71319.1| Possible ATPase involved in DNA replication initiation, DnaA paralog [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 211 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 56/181 (30%), Positives = 97/181 (53%), Gaps = 10/181 (5%) Query: 61 SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI-DLL 119 SW + + L GP GSGK+ LA+IW + + F N+ + I +LED+ D+ Sbjct: 36 SW--KYLFLFGPKGSGKTHLAHIWQSINNAI-FINVNNFISEIRYSN--AFILEDVQDIQ 90 Query: 120 DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179 D + L H N + + + LL+T+ T P L DL SR+ + KI ++ L Sbjct: 91 D--EATLLHCYNYMKENNKRLLITSSTSPKRLNFKLKDLSSRILSTISAKIPSASEELLR 148 Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 +++K F+D+Q+ +D K+ YI+ R+ERS ++++K+DN ++ G +T + +L Sbjct: 149 IMLIKRFSDKQLKVDLKVINYILARIERSFCSINRIIEKIDNGSM--GSNVTIPFVSTLL 206 Query: 240 K 240 K Sbjct: 207 K 207 >gi|326405005|ref|YP_004285087.1| hypothetical protein ACMV_28580 [Acidiphilium multivorum AIU301] gi|325051867|dbj|BAJ82205.1| hypothetical protein ACMV_28580 [Acidiphilium multivorum AIU301] Length = 237 Score = 84.7 bits (208), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 93/180 (51%), Gaps = 3/180 (1%) Query: 62 WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 W +R ++L G +GSGKS LA IW+ ++ +TR A L + P+L+EDID Sbjct: 35 WVNRRLVLWGEAGSGKSHLAWIWAARTCATRLD--AARLRTPASPGGAPLLIEDIDAAAA 92 Query: 122 NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 + + Q +LMT RT P V PDL SRL+A+ ++I + + L+ + Sbjct: 93 PLALFATLERAT-QAAVPVLMTCRTPPARLPVEPPDLASRLRASLTIRIEPAEPELLDAL 151 Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + ++ A RQ+ + L +++ R+ R + + ++D AL+ G +R LA +L E Sbjct: 152 LHRLAAARQMSLPPALHQFLLTRLPRRPAVLREAIARLDRYALALGTAPSRRLAERLLDE 211 >gi|157826035|ref|YP_001493755.1| hypothetical protein A1C_04965 [Rickettsia akari str. Hartford] gi|157799993|gb|ABV75247.1| hypothetical protein A1C_04965 [Rickettsia akari str. Hartford] Length = 222 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 59/228 (25%), Positives = 112/228 (49%), Gaps = 19/228 (8%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW----PSRVVILV-GPSGSGKSCL 80 +Q F F D+ +V S+ EQA ++ +W P + +L+ GPS SGK+ L Sbjct: 2 QQYIFRFTTSNKYHHDEFIVSSSNEQAYNIVKNWQYSFGVNPYKFTVLIKGPSSSGKTYL 61 Query: 81 ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140 IW + S + + ++ +++ ++EDI+ ++ + L HI N I++ L Sbjct: 62 TKIWQNLSNAYIIKD--SFFNAEILEKYNACIIEDIE--NWQEPALLHIFNIINEKQKYL 117 Query: 141 LMTA----RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196 L+T+ R F LPDL SR+K+ + ++ PDD+ ++ +I K F+ + I + Sbjct: 118 LLTSSDKTRNF------TLPDLSSRIKSVLSIALNSPDDELIKILIFKHFSISSVTISGQ 171 Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 + +++ + R ++++ +++ AL IT SL EVL Sbjct: 172 IIDFLLVNLPREYSKIIEILENINHSALISKRKITTSLVKEVLNNYHH 219 >gi|67458792|ref|YP_246416.1| hypothetical protein RF_0400 [Rickettsia felis URRWXCal2] gi|67004325|gb|AAY61251.1| DnaA-like protein [Rickettsia felis URRWXCal2] Length = 222 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 59/224 (26%), Positives = 111/224 (49%), Gaps = 11/224 (4%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW----PSRVVILV-GPSGSGKSCL 80 +Q F F D+ +V S+ EQA +I +W P + +L+ GPS SGK+ L Sbjct: 2 QQYIFRFITSNKYHPDEFIVSSSNEQAYNIIKNWQCNFGVNPYKFTLLIKGPSSSGKTYL 61 Query: 81 ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140 IW + S + +I + +++ ++E+I+ ++ + L HI N I++ L Sbjct: 62 TKIWQNLSNAYIIKDIF--FNEEILEKYNAFIIENIE--NWQEPALLHIFNIINEKQKYL 117 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L+T+ S LPDL SR+K+ + ++ PDD+ ++ +I K F+ + I ++ + Sbjct: 118 LLTSSN--KSRNFTLPDLSSRIKSVLSIALNSPDDELIKILIFKHFSISSVTISGQIIDF 175 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 ++ + R ++++ ++ AL IT SL EVL + Sbjct: 176 LLVNLPREYSKIIEILENINYFALISKRKITTSLVKEVLNKYNH 219 >gi|15604478|ref|NP_220996.1| hypothetical protein RP631 [Rickettsia prowazekii str. Madrid E] gi|3861172|emb|CAA15072.1| unknown [Rickettsia prowazekii] gi|292572260|gb|ADE30175.1| DnaA-like protein [Rickettsia prowazekii Rp22] Length = 221 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 58/219 (26%), Positives = 111/219 (50%), Gaps = 11/219 (5%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWP----SWPSRVVILV-GPSGSGKSCL 80 +Q F F D+ +V S+ QA +I +W + P + +L+ GPS SGK+ L Sbjct: 2 QQYIFHFTPSNKYHPDEFIVSSSNAQAYNIIKNWQYCFGANPYKFTLLIKGPSSSGKTYL 61 Query: 81 ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140 IW + S + +I + +++ ++EDI+ ++ + L HI N I++ L Sbjct: 62 TKIWQNLSNAYLIKDIF--FNEEILEKYNTFIIEDIE--NWQEPTLLHIFNVINEKQKYL 117 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L+T+ + LPDL SR+K+ + ++ PDD+ ++ +I K F+ + I +++ + Sbjct: 118 LLTSSD--KNNNFTLPDLSSRIKSVLSILLNAPDDELIKILIFKHFSISSVTISQQIIDF 175 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 ++ + R ++++ ++ AL IT SL EVL Sbjct: 176 LLVNLPREYSKIIEILENINYFALISKRKITISLVKEVL 214 >gi|114328698|ref|YP_745855.1| dnaA-like protein [Granulibacter bethesdensis CGDNIH1] gi|114316872|gb|ABI62932.1| dnaA-related protein [Granulibacter bethesdensis CGDNIH1] Length = 246 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/185 (30%), Positives = 97/185 (52%), Gaps = 3/185 (1%) Query: 62 WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 WP + L G G+GK+ L +IW+D + R SL + PV ++D D Sbjct: 41 WPQGRLGLFGDEGTGKTHLLSIWADLQEAER--RPGPSLRGLPRAPLAPVAVDDADATP- 97 Query: 122 NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 ++ L H+IN+ + +L+ +R P W V LPDL SRL+A + V I PDD L + Sbjct: 98 DEAALLHLINAAAEAGVPILLASRLPPARWRVTLPDLASRLRATSSVGILPPDDALLRAL 157 Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + ++ +RQ+ + L ++++ R+ R+ ++ ++D AL+ G +T+ LAA +L Sbjct: 158 LERLLTERQLSVPPSLQSWLLLRLPRTAWAVREVAARLDRAALAEGGRVTKILAARILNG 217 Query: 242 TQQCD 246 + D Sbjct: 218 LCESD 222 >gi|68171570|ref|ZP_00544945.1| chromosomal DNA replication initiator-related protein [Ehrlichia chaffeensis str. Sapulpa] gi|88658126|ref|YP_507704.1| hypothetical protein ECH_0913 [Ehrlichia chaffeensis str. Arkansas] gi|67999011|gb|EAM85687.1| chromosomal DNA replication initiator-related protein [Ehrlichia chaffeensis str. Sapulpa] gi|88599583|gb|ABD45052.1| conserved hypothetical protein [Ehrlichia chaffeensis str. Arkansas] Length = 218 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 59/191 (30%), Positives = 96/191 (50%), Gaps = 20/191 (10%) Query: 62 WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV---------- 111 W S IL G SGSGK+ LA+IW K ++ F +D LI+T+K + Sbjct: 37 WNS--FILYGKSGSGKTHLAHIWQ-KLKNAIF------IDQHLINTKKDIGDTISNGNAF 87 Query: 112 LLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 ++E+ID +D N+ + H N I + LLMT+ P DL SR+ K++ Sbjct: 88 IIENIDNID-NELSMLHHYNYIKENKKLLLMTSSIAPTLLNYHTKDLKSRILHTMSAKLA 146 Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231 PD++ L+ +++K+FAD+QI I+ K+ YI+ ERS +V +D G+T Sbjct: 147 NPDEELLKIMLIKLFADKQIHIELKVINYILNNTERSFQNLSNIVKCIDRNLPYYNNGVT 206 Query: 232 RSLAAEVLKET 242 ++++ Sbjct: 207 IPFVKSIIEKN 217 >gi|73666826|ref|YP_302842.1| chromosomal DNA replication initiator-related protein [Ehrlichia canis str. Jake] gi|72393967|gb|AAZ68244.1| chromosomal DNA replication initiator-related protein [Ehrlichia canis str. Jake] Length = 218 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 58/191 (30%), Positives = 97/191 (50%), Gaps = 20/191 (10%) Query: 62 WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV---------- 111 W S IL G SGSGK+ LA+IW K ++ F +D LI+T++ + Sbjct: 37 WNS--FILYGKSGSGKTHLAHIWQ-KLKNAIF------IDQYLINTKEDIGDIISNNNAF 87 Query: 112 LLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 ++E+ID +D N+ + H N I + LLMT+ P + DL SR+ K++ Sbjct: 88 IIENIDNID-NELSILHYYNYIKENKKLLLMTSSIAPRLLNYHIKDLKSRILHTMSAKLA 146 Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231 PD++ L+ +++K+FAD+QI I+ K+ YI+ ERS +V +D G+T Sbjct: 147 NPDEELLKIMLIKLFADKQIHIELKVINYILNNTERSFQNLSNIVKCIDRNLPYYNNGVT 206 Query: 232 RSLAAEVLKET 242 ++++ Sbjct: 207 IPFVKSIIEKN 217 >gi|42520947|ref|NP_966862.1| chromosomal DNA replication initiator-related protein [Wolbachia endosymbiont of Drosophila melanogaster] gi|58696878|ref|ZP_00372391.1| chromosomal DNA replication initiator-related protein [Wolbachia endosymbiont of Drosophila simulans] gi|58698753|ref|ZP_00373637.1| chromosomal DNA replication initiator-related protein [Wolbachia endosymbiont of Drosophila ananassae] gi|99034226|ref|ZP_01314294.1| hypothetical protein Wendoof_01000909 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] gi|225630699|ref|YP_002727490.1| chromosomal DNA replication initiator-related protein [Wolbachia sp. wRi] gi|42410688|gb|AAS14796.1| chromosomal DNA replication initiator-related protein [Wolbachia endosymbiont of Drosophila melanogaster] gi|58534726|gb|EAL58841.1| chromosomal DNA replication initiator-related protein [Wolbachia endosymbiont of Drosophila ananassae] gi|58536904|gb|EAL60088.1| chromosomal DNA replication initiator-related protein [Wolbachia endosymbiont of Drosophila simulans] gi|225592680|gb|ACN95699.1| chromosomal DNA replication initiator-related protein [Wolbachia sp. wRi] Length = 211 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 57/181 (31%), Positives = 98/181 (54%), Gaps = 8/181 (4%) Query: 61 SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120 SW + +IL GP SGK+ LA+IW + + F N+ + I +LED+ + Sbjct: 36 SW--KCLILFGPKSSGKTHLAHIWQSINDAI-FINVNNFVSEI--RYSDAFILEDVQNIK 90 Query: 121 FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 ++ L H N + + D LL+T+ P L DL SR+ + VKI ++ L Sbjct: 91 -DEAMLLHCYNYMKENDKRLLITSSISPKKLNFKLRDLSSRILSTISVKILPASEELLRI 149 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 +++K F+D+Q+ ID K+ YI+ R+ERS +K+++K+DN ++ G +T + +LK Sbjct: 150 MLIKRFSDKQLKIDLKVINYILARIERSFYSIDKIIEKIDNESI--GSNVTVPFISTLLK 207 Query: 241 E 241 + Sbjct: 208 K 208 >gi|254294273|ref|YP_003060296.1| DNA replication ATPase [Hirschia baltica ATCC 49814] gi|254042804|gb|ACT59599.1| ATPase-like protein involved in DNA replication initiation [Hirschia baltica ATCC 49814] Length = 240 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 60/224 (26%), Positives = 111/224 (49%), Gaps = 7/224 (3%) Query: 24 KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI 83 K +QL FP+ L + L+ A E A + W WP R + L+G +GSGK+ + Sbjct: 16 KSKQLVLDFPK-LDADLEPLIATPASEDARLALSRWEYWPERQMCLIGSAGSGKTRMLRN 74 Query: 84 WSDKSRSTRFSNI---AKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140 W+ + + + + A +D I + K +++++ D N L +N + L Sbjct: 75 WAQDTGAAYVTGVDLSAAEIDEISGLSVKALVVDNADSCS-NGGSLLAAMNLCKSRGAFL 133 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L++ T P SW + DL SRL A VVK D++ L+ +V + + + + A Y Sbjct: 134 LLSGSTDPSSWNMKPLDLQSRLSALPVVKFGAIDEETLKIRLVSACKSKFMKLPDETADY 193 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 +VQR+ R+ + +++V+K++ +A G + R+ A + + +Q Sbjct: 194 LVQRLARTYLVIDEIVEKLELVA--AGKALNRTTARKAIAALEQ 235 >gi|294012891|ref|YP_003546351.1| putative ATPase [Sphingobium japonicum UT26S] gi|292676221|dbj|BAI97739.1| putative ATPase [Sphingobium japonicum UT26S] Length = 204 Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 62/214 (28%), Positives = 94/214 (43%), Gaps = 22/214 (10%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 Q+ F R + D+ LV A AVR +++W +WP V +L GP SG+S L ++ Sbjct: 3 QISLPFDRPDHATADEFLVSDANRIAVRHLENWRNWPLAVSVLSGPPLSGRSTLGRHFAA 62 Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTART 146 +S T +ID D ++ LF+ N LL+ A Sbjct: 63 QSGGT------------VID----------DAQRQDERTLFNAWNDAQTAQRPLLLMADA 100 Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206 P W V LPDL SRL AA V + PD+ +I + + L ++++R+E Sbjct: 101 PPAIWQVALPDLRSRLAAAPHVALEEPDEALARALIERSLSSAGASYAADLPEWLLRRIE 160 Query: 207 RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 RS +D ALS G I+ ++A VL+ Sbjct: 161 RSYAAITAATRLLDEAALSSGRKISTAMAKHVLQ 194 >gi|149186108|ref|ZP_01864422.1| ATPase [Erythrobacter sp. SD-21] gi|148830139|gb|EDL48576.1| ATPase [Erythrobacter sp. SD-21] Length = 203 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 85/182 (46%), Gaps = 24/182 (13%) Query: 62 WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 WP IL GP+ SGKS + ++ + ++D D D Sbjct: 38 WPFGTAILAGPARSGKSLFSRWFASHTGGG--------------------AIDDADQKD- 76 Query: 122 NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 +T++FH N + LL+T W + LPDL SR+ AA ++I PDDD ++ Sbjct: 77 -ETEIFHAWNRAREDGYPLLLTVDAG--GWEIALPDLRSRMGAALQLEIGAPDDDLAAEL 133 Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++ A R + + + AY++ RMERS E++V ++D L+L R T S+ + L Sbjct: 134 MLSHAAQRGLALGEGAPAYLIPRMERSHAAIERIVAEIDRLSLERKAPATMSIWRDALDA 193 Query: 242 TQ 243 Q Sbjct: 194 VQ 195 >gi|296115157|ref|ZP_06833798.1| Chromosomal replication initiator DnaA [Gluconacetobacter hansenii ATCC 23769] gi|295978258|gb|EFG84995.1| Chromosomal replication initiator DnaA [Gluconacetobacter hansenii ATCC 23769] Length = 252 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/222 (23%), Positives = 106/222 (47%), Gaps = 8/222 (3%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL F +R D + + A + +WP R + L G G GK+ L IW+ Sbjct: 9 QLVLPFAHMQHFTRADFVAARSNAVARAWLLGRTAWPDRRLALWGARGCGKTHLLEIWAA 68 Query: 87 KSRSTRFSN-------IAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSS 139 + + S +A+ + + ++D + ++ + H++N ++ + Sbjct: 69 EHDAVLLSGADLTCGDVARLFGAGRGSGVVAIAVDDAECC-ADERAVLHLLNGAREHGMA 127 Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199 L ++ R P W V LPDL SRL+A V++ P+D L V++++ A+RQI + + Sbjct: 128 LALSGRRPPARWPVTLPDLASRLRATMAVEVRQPEDMLLRVVLLRLLAERQIVVAPAIVD 187 Query: 200 YIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 +++ R+ R+ ++ ++D+ L+ G +TR++A L + Sbjct: 188 WLLPRLPRTAATMLEVARRLDHATLATGRAVTRAMAVGELHD 229 >gi|57238925|ref|YP_180061.1| hypothetical protein Erum1920 [Ehrlichia ruminantium str. Welgevonden] gi|58578857|ref|YP_197069.1| hypothetical protein ERWE_CDS_01930 [Ehrlichia ruminantium str. Welgevonden] gi|57161004|emb|CAH57910.1| conserved hypothetical protein [Ehrlichia ruminantium str. Welgevonden] gi|58417483|emb|CAI26687.1| Conserved hypothetical protein [Ehrlichia ruminantium str. Welgevonden] Length = 230 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 49/152 (32%), Positives = 81/152 (53%), Gaps = 8/152 (5%) Query: 62 WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----NIAKSLDSILIDTRKPVLLEDID 117 W S IL G SGSGK+ LA+IW + + N K ++++ I + ++E+I+ Sbjct: 37 WSS--FILYGKSGSGKTHLAHIWQKLKNAIFINHDLINTGKGIENV-ISSSNAFIIENIE 93 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 + N++ H N I + LLMT+ P + DL SR+ K++ PD++ Sbjct: 94 NIS-NESSTLHYYNYIKENKKILLMTSSIAPRFLNYKIKDLKSRMLYTMNAKLANPDEEL 152 Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209 L+ +++K+F DRQI I+ K+ YI+ ERS Sbjct: 153 LKIMLIKLFVDRQIHIELKVINYILNNTERSF 184 >gi|58616915|ref|YP_196114.1| hypothetical protein ERGA_CDS_01880 [Ehrlichia ruminantium str. Gardel] gi|58416527|emb|CAI27640.1| Conserved hypothetical protein [Ehrlichia ruminantium str. Gardel] Length = 230 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 49/152 (32%), Positives = 81/152 (53%), Gaps = 8/152 (5%) Query: 62 WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----NIAKSLDSILIDTRKPVLLEDID 117 W S IL G SGSGK+ LA+IW + + N K ++++ I + ++E+I+ Sbjct: 37 WSS--FILYGKSGSGKTHLAHIWQKLKNAIFINHDLINTGKGIENV-ISSSNAFIIENIE 93 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 + N++ H N I + LLMT+ P + DL SR+ K++ PD++ Sbjct: 94 NIS-NESSTLHYYNYIKENKKILLMTSSIAPRFLNYKIKDLKSRMLYTMNAKLANPDEEL 152 Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209 L+ +++K+F DRQI I+ K+ YI+ ERS Sbjct: 153 LKIMLIKLFVDRQIHIELKVINYILNNTERSF 184 >gi|307293975|ref|ZP_07573819.1| putative ATPase [Sphingobium chlorophenolicum L-1] gi|306880126|gb|EFN11343.1| putative ATPase [Sphingobium chlorophenolicum L-1] Length = 204 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 61/216 (28%), Positives = 94/216 (43%), Gaps = 22/216 (10%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 Q+ F R D+ LV A AVR +++W +WP V +L GP SG+S L ++ Sbjct: 3 QISLPFDRPDQAKADEFLVSEANRIAVRHLENWRNWPLAVSLLSGPPLSGRSTLGRHFAA 62 Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTART 146 +S T +ID D ++ LF+ N LL+ A Sbjct: 63 QSGGT------------VID----------DAQRQDERTLFNAWNDAQTAQRPLLLIADA 100 Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206 P W V LPDL SRL AA V + PD+ +I + + L ++++R+E Sbjct: 101 PPAIWHVALPDLRSRLAAAPHVALHQPDEALARALIERSLSSTGASYAADLPEWLLRRIE 160 Query: 207 RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 RS +D +LS G I+ ++A VL++ Sbjct: 161 RSYAAIAAATRLLDEASLSSGRKISTAMAKHVLQDA 196 >gi|218510164|ref|ZP_03508042.1| hypothetical protein RetlB5_23469 [Rhizobium etli Brasil 5] Length = 69 Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 41/61 (67%), Positives = 50/61 (81%) Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 +IVK+FADRQ++ID KL YIV RMERSL A+ +V+++D LALSRG ITRSLAAEVL Sbjct: 1 MIVKLFADRQLYIDDKLVLYIVNRMERSLNAAQTIVERLDRLALSRGTKITRSLAAEVLN 60 Query: 241 E 241 E Sbjct: 61 E 61 >gi|51473811|ref|YP_067568.1| hypothetical protein RT0622 [Rickettsia typhi str. Wilmington] gi|51460123|gb|AAU04086.1| conserved hypothetical protein [Rickettsia typhi str. Wilmington] Length = 221 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 59/224 (26%), Positives = 110/224 (49%), Gaps = 11/224 (4%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW----PSRVVILV-GPSGSGKSCL 80 +Q F F D+ +V S+ QA +I +W P + +L+ GPS SGK+ L Sbjct: 2 QQYIFRFTTSNKYHPDEFIVSSSNAQAYNIIKNWQCCFGVNPYKFTLLIKGPSSSGKTYL 61 Query: 81 ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140 IW + S + +I L+ +++ ++EDI+ + + L HI N I++ L Sbjct: 62 TKIWQNLSNAYIIKDIF--LNEEILEKNNTFIIEDIE--SWQEPALLHIFNIINEKQKYL 117 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L+T+ + LPDL SR+K+ + ++ PDD+ ++ +I K F+ + I +++ Sbjct: 118 LLTSS--DKNDNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDL 175 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 ++ + R ++++ ++ AL IT SL EVL + Sbjct: 176 LLVNLPREYSKIIEILENINYFALISKRKITISLVKEVLNNYKN 219 >gi|269959014|ref|YP_003328803.1| hypothetical protein ACIS_01000 [Anaplasma centrale str. Israel] gi|269848845|gb|ACZ49489.1| hypothetical protein ACIS_01000 [Anaplasma centrale str. Israel] Length = 221 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 4/177 (2%) Query: 68 ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK--PVLLEDIDLLDFNDTQ 125 +L G SGSGK+ LA++W K R F + + + R+ V++EDID L +++ Sbjct: 44 VLYGKSGSGKTHLAHMWK-KLRKANFICYDQVIGEAIGAIRESSAVIIEDIDNLS-DESW 101 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 + H N + LLMT+ P L DL SR+ +A ++ PD++ L ++VK+ Sbjct: 102 VLHCYNFAREAGKPLLMTSSLPPHMLNYQLKDLESRIVSAMSASLADPDEELLRIMLVKL 161 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 F DRQ+ ID + YI+ +ERS +V+ +D + G+T V++ + Sbjct: 162 FTDRQMHIDIRTVNYILNNVERSFKKLSDVVNLIDTELPTNARGVTIPFVRSVIRRS 218 >gi|56416571|ref|YP_153645.1| hypothetical protein AM296 [Anaplasma marginale str. St. Maries] gi|222474938|ref|YP_002563353.1| hypothetical protein AMF_220 [Anaplasma marginale str. Florida] gi|255002912|ref|ZP_05277876.1| hypothetical protein AmarPR_01147 [Anaplasma marginale str. Puerto Rico] gi|255004040|ref|ZP_05278841.1| hypothetical protein AmarV_01241 [Anaplasma marginale str. Virginia] gi|56387803|gb|AAV86390.1| hypothetical protein AM296 [Anaplasma marginale str. St. Maries] gi|222419074|gb|ACM49097.1| Conserved hypothetical protein [Anaplasma marginale str. Florida] Length = 221 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 54/175 (30%), Positives = 90/175 (51%), Gaps = 4/175 (2%) Query: 68 ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK--PVLLEDIDLLDFNDTQ 125 +L G SGSGK+ LA++W K R F + + + R+ V++EDID L +++ Sbjct: 44 VLYGKSGSGKTHLAHMWQ-KLRKASFICHGQVIGEAIGTIRESSAVIIEDIDNLR-DESW 101 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 + H N + LLMT+ P L DL SR+ +A ++ PD++ L ++VK+ Sbjct: 102 VLHCYNFAREAGKPLLMTSSLPPHMLNYQLKDLESRIVSAMSASLADPDEELLRIMLVKL 161 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 F DRQ+ ID + YI+ +ERS +V+ +D + G+T V++ Sbjct: 162 FTDRQMHIDVRTVNYILNNVERSFKKLSDVVNLIDTELPTNARGVTIPFVRSVIR 216 >gi|254994786|ref|ZP_05276976.1| hypothetical protein AmarM_01237 [Anaplasma marginale str. Mississippi] Length = 221 Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 54/175 (30%), Positives = 90/175 (51%), Gaps = 4/175 (2%) Query: 68 ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK--PVLLEDIDLLDFNDTQ 125 +L G SGSGK+ LA++W K R F + + + R+ V++EDID L +++ Sbjct: 44 VLYGKSGSGKTHLAHMWQ-KLRKASFICHGQVIGEAIGTIRESSAVIIEDIDNLR-DESW 101 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 + H N + LLMT+ P L DL SR+ +A ++ PD++ L ++VK+ Sbjct: 102 VLHCYNFAREAGKPLLMTSSLPPHMLNYQLKDLESRIVSAMSASLADPDEELLRIMLVKL 161 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 F DRQ+ ID + YI+ +ERS +V+ +D + G+T V++ Sbjct: 162 FTDRQMHIDIRTVNYILNNVERSFKKLSDVVNLIDTELPTNARGVTIPFVRSVIR 216 >gi|85374595|ref|YP_458657.1| ATPase [Erythrobacter litoralis HTCC2594] gi|84787678|gb|ABC63860.1| ATPase [Erythrobacter litoralis HTCC2594] Length = 209 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 83/186 (44%), Gaps = 24/186 (12%) Query: 61 SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120 +WP IL+GP SGKS L ++ ++T + DS Sbjct: 43 AWPFGTAILMGPPRSGKSLLGRWVEEQGKAT----VIDGADS------------------ 80 Query: 121 FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 ++T LFH N Q LL+ A SW + LPDL SRL AA V+I PDD L Sbjct: 81 ESETTLFHRWNRAQQNGEKLLLIADG--ESWHITLPDLKSRLGAALHVEIGTPDDAMLGD 138 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 +++ R + + + Y++ R RS EKLV +D L+L R + T + + L+ Sbjct: 139 LVLSHATRRGLALGEDALTYLIPRATRSFADIEKLVGHIDRLSLERKVAPTLGIWRDALE 198 Query: 241 ETQQCD 246 Q + Sbjct: 199 AVQGPE 204 >gi|88607408|ref|YP_505556.1| hypothetical protein APH_0994 [Anaplasma phagocytophilum HZ] gi|88598471|gb|ABD43941.1| conserved hypothetical protein [Anaplasma phagocytophilum HZ] Length = 220 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 90/188 (47%), Gaps = 8/188 (4%) Query: 57 DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI-LIDTRKPVLLED 115 D W S+ +L G GSGK+ LA++W K + F K D+I +I V+ ED Sbjct: 38 DLWSSF-----VLYGVKGSGKTHLAHLWG-KLKQASFLTYGKISDAIQVIKESNAVIAED 91 Query: 116 IDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 ID + ++ L H N + LMTA P L DL SR+ + K+ P++ Sbjct: 92 IDSIP-DEEWLLHCYNYSKENRKPFLMTASVPPNLLNHSLKDLRSRIISTMSAKLVEPNE 150 Query: 176 DFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235 + L ++VK+F +RQ+ ID K YI+ +ERS +V +D S G+T Sbjct: 151 ELLRIMLVKLFTERQLHIDIKTINYILNNVERSFKKLSDIVRLIDIELTSSAGGVTVPFV 210 Query: 236 AEVLKETQ 243 +++ + Sbjct: 211 RSIIRRVE 218 >gi|88608364|ref|YP_506085.1| hypothetical protein NSE_0190 [Neorickettsia sennetsu str. Miyayama] gi|88600533|gb|ABD46001.1| conserved hypothetical protein [Neorickettsia sennetsu str. Miyayama] Length = 223 Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 90/186 (48%), Gaps = 11/186 (5%) Query: 62 WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 + + ++L G S SGK+ + +W+ K + SN+ + + ++DID L Sbjct: 39 FSQKPIVLKGHSKSGKTHIGRVWASKHGADILSNLTEQTHFAI---HNHCFIDDIDKLTT 95 Query: 122 NDT--QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179 + L HI N + LLMT R+ + + LPDL SRL+++ I PDD+ L Sbjct: 96 QEEIEALLHIYNGAIESGKILLMTTRS--LDFSDVLPDLSSRLRSSITYSIPPPDDELLR 153 Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 VI K F Q + +K+ ++QR++RSL V ++ AL +G + ++A + Sbjct: 154 VVIRKQFYLYQTRVSEKIVDLVLQRVDRSLEAVVDFVALLNREALHKG----KPISARLF 209 Query: 240 KETQQC 245 E C Sbjct: 210 HEASAC 215 >gi|326386755|ref|ZP_08208376.1| ATPase [Novosphingobium nitrogenifigens DSM 19370] gi|326208808|gb|EGD59604.1| ATPase [Novosphingobium nitrogenifigens DSM 19370] Length = 212 Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 57/184 (30%), Positives = 85/184 (46%), Gaps = 28/184 (15%) Query: 61 SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120 +WP R +L GP SGKS LA W + + + L+D D L Sbjct: 35 TWPYRTAVLSGPPRSGKSLLAR-W-------------------FVSSGQGDALDDADRLP 74 Query: 121 FNDTQLFHIINSIHQYDSSLLMTARTFPV-----SWGVCLPDLCSRLKAATVVKISLPDD 175 + ++FH N LL+ +R PV W + LPDL SRL AA + I PDD Sbjct: 75 --EVEVFHRWNRAQADGRPLLLVSRQ-PVVAGGDGWRITLPDLASRLGAALPLAIGAPDD 131 Query: 176 DFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235 L ++ + R + I + + +++ R+ERS AE LV +D L+L R +T +L Sbjct: 132 ILLRALVEEHARRRGLMIGESVLDWLLPRIERSHAAAEALVATIDRLSLERKAPVTLALV 191 Query: 236 AEVL 239 + L Sbjct: 192 RDAL 195 >gi|91205351|ref|YP_537706.1| hypothetical protein RBE_0536 [Rickettsia bellii RML369-C] gi|157826952|ref|YP_001496016.1| hypothetical protein A1I_03070 [Rickettsia bellii OSU 85-389] gi|91068895|gb|ABE04617.1| Chromosomal replication initiator protein DnaA-like protein [Rickettsia bellii RML369-C] gi|157802256|gb|ABV78979.1| hypothetical protein A1I_03070 [Rickettsia bellii OSU 85-389] Length = 220 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 54/208 (25%), Positives = 105/208 (50%), Gaps = 10/208 (4%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILV-GPSGSGKSCLANIWSDKSRST 91 P +S + LV++A++ +S+ P ++ +L+ GP+ SGK+ L IW + S + Sbjct: 15 PEEFIVSESNALVYNALQNWQ---NSFGVNPYKLTLLIKGPASSGKTYLTKIWQNLSNAY 71 Query: 92 RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSW 151 +I D ++ ++EDI+ ++ +T L H+ N I++ LL+T+ Sbjct: 72 IIKDIF--FDDKILANHTAFIIEDIE--NWQETALLHLFNLINEKQKYLLLTSNN--KGK 125 Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211 LPDL SR+ + V + PDD+ ++ +I K FA + I + + +++ + R Sbjct: 126 NFTLPDLSSRINSILNVLLYPPDDELIKILIFKHFATSSVTISQIVIDFLLVNLPREYNR 185 Query: 212 AEKLVDKMDNLALSRGMGITRSLAAEVL 239 ++++ ++N AL+ IT L E L Sbjct: 186 ILEILEYINNFALTSKRKITIPLVKEAL 213 >gi|254796578|ref|YP_003081414.1| hypothetical protein NRI_0184 [Neorickettsia risticii str. Illinois] gi|254589811|gb|ACT69173.1| conserved hypothetical protein [Neorickettsia risticii str. Illinois] Length = 179 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/182 (31%), Positives = 89/182 (48%), Gaps = 11/182 (6%) Query: 68 ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT--Q 125 +L G S SGK+ + +W+ K + SN+ + + ++DID L + Sbjct: 1 MLKGHSKSGKTHIGRVWASKHGADILSNLTEQAHFAI---HNHCFIDDIDKLTTQEEIEA 57 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 L HI NS + LLMT R+ + + LPDL SRL+A+ I PDD+ L V K Sbjct: 58 LLHIYNSAIESGKILLMTTRS--LDFSDVLPDLSSRLRASITYSIPPPDDELLRVVTRKQ 115 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL----AAEVLKE 241 F Q + +K+ ++QR++RSL V ++ AL +G I+ L +A V K+ Sbjct: 116 FYLYQTRVSEKVVNLVLQRVDRSLEAVVDFVALLNREALHKGKPISARLFHEASAYVSKQ 175 Query: 242 TQ 243 Q Sbjct: 176 NQ 177 >gi|58040365|ref|YP_192329.1| DnaA-related protein [Gluconobacter oxydans 621H] gi|58002779|gb|AAW61673.1| DnaA-related protein [Gluconobacter oxydans 621H] Length = 253 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 88/182 (48%), Gaps = 3/182 (1%) Query: 62 WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN--IAKSLDSILIDTRKPVLLEDIDLL 119 WP + L G SG+GK+ L W+ + +T + S I + + +++ D Sbjct: 67 WPDGRLWLWGSSGTGKTHLLTAWAHEHDATVLDARLFSTSSAGGRIRVQGNLAIDNADS- 125 Query: 120 DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179 ++ + H++N +LM R P LPDL SRL+A P+DD Sbjct: 126 PGDEATMLHLLNDAFSQGDRVLMAGRLPPSRSHFMLPDLASRLRATATTATGEPEDDLRA 185 Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 +++ + ADRQ+ + + + ++ + + R+ V+++D AL+R ITR+LA E+L Sbjct: 186 TLLLSLLADRQLVVSQTVTEWLWRHLPRTGNALVSAVERLDEAALARKRPITRALAMEML 245 Query: 240 KE 241 + Sbjct: 246 PD 247 >gi|330813923|ref|YP_004358162.1| chromosomal replication initiator protein DnaA [Candidatus Pelagibacter sp. IMCC9063] gi|327487018|gb|AEA81423.1| chromosomal replication initiator protein DnaA [Candidatus Pelagibacter sp. IMCC9063] Length = 208 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 52/209 (24%), Positives = 99/209 (47%), Gaps = 15/209 (7%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 E+ FF C+ S D+ + + WP+W ++ + GP SGK+ L ++ Sbjct: 12 EEYFFEEDFCISQSNQDVCNY---------LRKWPNWDDNIINIFGPKKSGKTFLLTVFE 62 Query: 86 DKSRSTRFSNIAKSLDSILIDT---RKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLM 142 K+ R S A +L+ + + + +++ED++ + ++ LF + N + L+ Sbjct: 63 RKNSFFRIS--ANTLNKETVSSALSQDRLIIEDVEE-NTDEELLFLLFNEFKNNNKYLIF 119 Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 ++ L DL SR K+ ++IS P D L V++K +++QI I K+L + + Sbjct: 120 SSTQDSSRISFQLQDLSSRFKSMLNLEISNPSDTLLCSVLMKQLSEKQITIKKELITHTI 179 Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGIT 231 +R+ERS K +D +L +T Sbjct: 180 KRIERSYDSVNKFSVMIDEESLKNKKKLT 208 >gi|85709210|ref|ZP_01040276.1| ATPase [Erythrobacter sp. NAP1] gi|85690744|gb|EAQ30747.1| ATPase [Erythrobacter sp. NAP1] Length = 186 Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 81/191 (42%), Gaps = 31/191 (16%) Query: 61 SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120 SWP +L GP SGKS L N + + +E ID D Sbjct: 17 SWPFNTAVLTGPPRSGKSLLGNWAAGQG------------------------IEVIDRAD 52 Query: 121 -FNDTQLFHIINSIHQYDS----SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 ++ ++FH N++ + S LL+ A + P W + LPDL SRL + + I PDD Sbjct: 53 TLDEAEVFHRWNAVQEGGSRAGTKLLLIADSTP--WEISLPDLKSRLGGSLQLAIGDPDD 110 Query: 176 DFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235 ++I R + + + A Y+V R RS E LV +D ++L R T S+ Sbjct: 111 AMAAQLIEAHAEARGLTLAEGAADYLVPRTRRSFADIEALVRTIDRISLERAAPATMSVW 170 Query: 236 AEVLKETQQCD 246 L+ D Sbjct: 171 RAALEALHGPD 181 >gi|110834432|ref|YP_693291.1| hypothetical protein ABO_1571 [Alcanivorax borkumensis SK2] gi|110647543|emb|CAL17019.1| conserved hypothetical protein [Alcanivorax borkumensis SK2] Length = 245 Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 48/153 (31%), Positives = 78/153 (50%), Gaps = 19/153 (12%) Query: 98 KSLDSILIDTRK-----PVLLEDID---LLDFNDTQLF-----------HIINSIHQYDS 138 LD+ L+ R+ P +LE ++ LL +D QLF H+ N + Sbjct: 83 NGLDACLLPAREIIPLVPEVLESMEQFGLLAIDDCQLFAGLPAWEEALFHLYNRLMSLGG 142 Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198 LL+TA P + G+ LPDL +RL A V ++ +DD L+ ++ + R + ++ ++A Sbjct: 143 RLLVTANASPAAMGLMLPDLATRLAAGPVYRLMSLEDDDLQALLQERAKARGLRLEPEVA 202 Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231 YIV R ERS L+ K+D LAL++ +T Sbjct: 203 HYIVLRSERSAGALMALLAKLDRLALAQQRPVT 235 >gi|56551607|ref|YP_162446.1| DNA replication initiation ATPase [Zymomonas mobilis subsp. mobilis ZM4] gi|241761267|ref|ZP_04759355.1| ATPase involved in DNA replication initiation [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260752800|ref|YP_003225693.1| chromosomal replication initiator, DnaA [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|56543181|gb|AAV89335.1| ATPase involved in DNA replication initiation [Zymomonas mobilis subsp. mobilis ZM4] gi|241374174|gb|EER63671.1| ATPase involved in DNA replication initiation [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552163|gb|ACV75109.1| chromosomal replication initiator, DnaA [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 214 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/205 (22%), Positives = 84/205 (40%), Gaps = 22/205 (10%) Query: 42 DLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLD 101 D +V A AV + W WP + +L G SG+S L ++ ++ N + + Sbjct: 24 DFIVSDANNIAVEQLRLWQKWPVKSALLTGMRKSGRSLLGRLFVARTGGELIDNAERRSE 83 Query: 102 SILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161 + FH N + LL+ A P W + LPDL SR Sbjct: 84 EFI----------------------FHAWNRAERLKRPLLVIADQPPPLWKIRLPDLRSR 121 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 + A+ + I PDD + +I + R + + ++ ++ R+E + + +DK+D Sbjct: 122 MIASPHLVIKAPDDSLIAALIERRLGRRGLPVSTEILEWVTPRIEHNYIAVLDWIDKLDQ 181 Query: 222 LALSRGMGITRSLAAEVLKETQQCD 246 AL R IT ++ ++ + D Sbjct: 182 AALKRRGPITLNMVRAIMAGEEIPD 206 >gi|254492445|ref|ZP_05105617.1| chromosomal replication initiator protein DnaA [Methylophaga thiooxidans DMS010] gi|224462337|gb|EEF78614.1| chromosomal replication initiator protein DnaA [Methylophaga thiooxydans DMS010] Length = 234 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 50/187 (26%), Positives = 89/187 (47%), Gaps = 15/187 (8%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL---EDIDLLDFND 123 + L G +G+GK+ L ++K + F I SL LI T +P +L E DLL +D Sbjct: 46 LYLYGETGTGKTHLLIACAEKVQKLGFRVIYLSLAE-LIQTSEPAVLQSLEQADLLCLDD 104 Query: 124 TQ-----------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 + LFH N +H SLL++A P + + LPDLCSRL V +++ Sbjct: 105 LEAVAGNKEWEVALFHCFNRLHDAKGSLLVSAEHNPANSQIQLPDLCSRLATGLVYQLTT 164 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232 D+ ++ ++ R + ++ +A Y+++ R + ++ ++D +L +T Sbjct: 165 MSDEQKQQALILQSQKRGLTMNDDVAQYLLRHYGRDMPALMSVLQQLDKASLQAKRKLTI 224 Query: 233 SLAAEVL 239 +VL Sbjct: 225 PFIRQVL 231 >gi|121997504|ref|YP_001002291.1| chromosomal replication initiator, DnaA [Halorhodospira halophila SL1] gi|121588909|gb|ABM61489.1| regulatory inactivation of DnaA Hda protein [Halorhodospira halophila SL1] Length = 241 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 50/193 (25%), Positives = 83/193 (43%), Gaps = 12/193 (6%) Query: 66 VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI---------DTRKPVLLEDI 116 + L GP G GKS L + + + LD +L + + + L+D+ Sbjct: 42 ALYLHGPHGVGKSHLLQGACRRVTTAGGVAVYLPLDQLLGHGAAVLDGWEQAQLIALDDL 101 Query: 117 DLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 D LD D +FH+ N + + LL R P + LPDL SRL VV + P Sbjct: 102 DALDGRDEWQGAVFHLYNRVVERGGRLLFAGRQPPAELPLDLPDLRSRLGWGPVVAVREP 161 Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233 D+ ++ + A R + + A Y+++R+ R L + +D +L+ G +T Sbjct: 162 DETTCLAILRQRAAQRGLELPDATARYLIRRLPRELPGLLAFFETLDRASLAAGRRLTVP 221 Query: 234 LAAEVLKETQQCD 246 E+L E + D Sbjct: 222 FVREILAERSRPD 234 >gi|254427815|ref|ZP_05041522.1| chromosomal replication initiator protein DnaA [Alcanivorax sp. DG881] gi|196193984|gb|EDX88943.1| chromosomal replication initiator protein DnaA [Alcanivorax sp. DG881] Length = 229 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 67/130 (51%), Gaps = 11/130 (8%) Query: 113 LEDIDLLDFNDTQLF-----------HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161 +E LL +D QLF H+ N + LL+TA P + G+ LPDL +R Sbjct: 90 MEQFGLLAIDDCQLFAGLPAWEEALFHLYNRLMSLGGRLLVTANASPGAMGLMLPDLATR 149 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 L A V ++ +D+ L+ ++ + R + ++ ++A YIV R ERS +L+ +D Sbjct: 150 LAAGPVYRLMSLEDEDLQALLQERARARGLRLEPEVAHYIVLRSERSAGALMELLSDLDR 209 Query: 222 LALSRGMGIT 231 LAL++ +T Sbjct: 210 LALAQQRSVT 219 >gi|114798512|ref|YP_760956.1| hypothetical protein HNE_2261 [Hyphomonas neptunium ATCC 15444] gi|114738686|gb|ABI76811.1| conserved hypothetical protein [Hyphomonas neptunium ATCC 15444] Length = 243 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 52/207 (25%), Positives = 89/207 (42%), Gaps = 11/207 (5%) Query: 22 KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 ++ Q SFP + D L+ E AV L +W + + + GP+ G + LA Sbjct: 9 QDGPAQPLLSFPVPV-AHWDGLISGGPNEAAVGLASRPEAWATHALCVTGPARCGLTYLA 67 Query: 82 NIWSDK-----SRSTRFSNIA-KSLDSILIDTRKPVLLEDIDLLDFN-DTQLFHIINSIH 134 W+ + + F + +LD + V L+D+D++ D L N I Sbjct: 68 RAWAGRFGGQYMTAAEFGALKLGALDGL---AGGYVALDDVDMIAARRDEPLLLFYNMIA 124 Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194 +L+ A T P W + DL SRL + V +IS PD+ + + A R + + Sbjct: 125 AKGGRVLLVAHTGPAGWRTGIADLRSRLNSMPVAEISQPDEAHVRARLRAAAAQRFMKLS 184 Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDN 221 + Y+V R++ S E L+D++ Sbjct: 185 PETINYLVPRIDLSYEAIETLMDRLSG 211 >gi|226945733|ref|YP_002800806.1| DNA replication initiation factor [Azotobacter vinelandii DJ] gi|226720660|gb|ACO79831.1| DnaA family protein, probable Hda [Azotobacter vinelandii DJ] Length = 234 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 57/211 (27%), Positives = 95/211 (45%), Gaps = 22/211 (10%) Query: 47 SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID 106 +A+ A RL + W ++ L G G G+S L + R +A L + Sbjct: 28 AALGYAERLCEPDAGWTESLIYLWGAEGVGRSHLLQAACIRFEQRR--ELAIYLPLAEVA 85 Query: 107 TRKPVLLEDID---LLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPVSWG 152 PVLL++++ L+ +D + LFH+ N + LL++A P Sbjct: 86 DYGPVLLDNLEQSELVCLDDLEAIAGRADWEEALFHLFNRLRDCGRRLLLSASVPPRELS 145 Query: 153 VCLPDLCSRLKAATVVKI-SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211 + LPDL SRL A V ++ L D+D L + ++ + R + + ++ +I+ R RS+ Sbjct: 146 IELPDLKSRLTLALVFQLQGLSDEDKLRALQLRA-SRRGLHLTDEVGRFILTRGSRSMAA 204 Query: 212 AEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 L+DK+D +L R L LKET Sbjct: 205 LFDLLDKLDQASLQ----AQRRLTIPFLKET 231 >gi|261855342|ref|YP_003262625.1| DnaA regulatory inactivator Hda [Halothiobacillus neapolitanus c2] gi|261835811|gb|ACX95578.1| DnaA regulatory inactivator Hda [Halothiobacillus neapolitanus c2] Length = 233 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 10/165 (6%) Query: 71 GPSGSGKSCLAN----IWSDKSRSTRFSNIAKS---LDSILIDTRKPVLLEDIDLLDFND 123 G GK+ LA + RS + ++ K+ LD + + ++L+D+D L +D Sbjct: 53 GAQNCGKTHLAQAACFYAGQQGRSAAYIDVKKNPSQLDHMNLSHIDLLVLDDVDALAGDD 112 Query: 124 TQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 LF +IN + + + LLMTA P + G LPDL SRL + I P++ + Sbjct: 113 QGEFLLFDLINRLREQEIPLLMTASLPPAACGFQLPDLLSRLGWGITMLIHAPNEAEKIE 172 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 ++ + +R + + A Y++QR R L K++ +D+ +LS Sbjct: 173 LLRRKAQERGFDLPFESAVYLLQRSPRDLGSLLKIIQDLDHASLS 217 >gi|117925602|ref|YP_866219.1| regulatory inactivation of DnaA Hda protein [Magnetococcus sp. MC-1] gi|117609358|gb|ABK44813.1| regulatory inactivation of DnaA Hda protein [Magnetococcus sp. MC-1] Length = 247 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 62/240 (25%), Positives = 104/240 (43%), Gaps = 28/240 (11%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL +FP +S ++L+V + A+ + + +IL G +G+GK+ L Sbjct: 7 QLLIAFPLDPVLSWENLVVGAHNTIAIHGVRQLEAAKVPGLILTGAAGAGKTHLLQAAVA 66 Query: 87 KSRSTRFSNIAKSLD--------------------SILIDTRKPVLLEDIDLLDFNDTQL 126 R+ + A LD S ID L ID L+ + + Sbjct: 67 SVRAQYGEHAAVYLDLATLSKHLENQPKAHSEALLSRFIDRYGSCRLAAIDELELLEHAV 126 Query: 127 ------FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 ++ N + LL R P + DL SRL V+ I PD+ L + Sbjct: 127 GLQEGVLYLYNRLRVAGGHLLGAGREDPSTMSGLRDDLRSRLLWGPVLHIDEPDEVALGQ 186 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSL-VFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 ++ KM ADRQ+ + + + +++ R+ RS+ VFA+ + ++D AL + +T LA EVL Sbjct: 187 IMDKMAADRQLRLSEAVRHFLLLRLPRSVPVFAQT-IQRLDEEALRQQRALTVPLAKEVL 245 >gi|289207741|ref|YP_003459807.1| DnaA regulatory inactivator Hda [Thioalkalivibrio sp. K90mix] gi|288943372|gb|ADC71071.1| DnaA regulatory inactivator Hda [Thioalkalivibrio sp. K90mix] Length = 243 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 74/156 (47%), Gaps = 13/156 (8%) Query: 67 VILVGPSGSGKSCL--ANIWSDKSRSTRFS-----NIAKSLDSILIDTRKPVLLEDIDLL 119 ++L GPSGSGK+ L A + R S +A++ ++D + L +D L Sbjct: 54 ILLHGPSGSGKTHLLQAACYQGHERGDPVSYLPLGEVAEAPPMAVLDGLERSCLVALDDL 113 Query: 120 DFN------DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 + D LF ++N + +L+ A P V LPDL SRL V ++ P Sbjct: 114 EAVVGRGDWDEALFGLVNRLRDAGCRVLLAAAAPPEGLPVRLPDLASRLAWGPVFRMQRP 173 Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209 DD ++++ + A R + + + +A Y+++R R L Sbjct: 174 DDVACKEILAQRAALRGLELPEPVADYLLRRCSRDL 209 >gi|254283923|ref|ZP_04958891.1| DnaA regulatory inactivator Hda [gamma proteobacterium NOR51-B] gi|219680126|gb|EED36475.1| DnaA regulatory inactivator Hda [gamma proteobacterium NOR51-B] Length = 237 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 83/182 (45%), Gaps = 14/182 (7%) Query: 69 LVGPSGSGKSCLANIWSDKSRS-------TRFSNI--AKSLDSILIDTRKPVLLEDIDLL 119 L G +GSGKS L + + F++ A+ LD I D V L+DID + Sbjct: 51 LFGGAGSGKSHLLQASCAATTAPALYIPLAEFADYPAAQVLDGI--DALSLVALDDIDRI 108 Query: 120 DFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 + + LFH N + LL++A + L DL SRL + ++ PDDD Sbjct: 109 AGDSSWEEALFHAFNLCVGSGTRLLVSASSTASQIDFTLADLQSRLGSLAAFRLPRPDDD 168 Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236 LE+++ R I + ++ YIV R R L++K+D AL+R +T L Sbjct: 169 SLERMLDLRAGHRGITLSAEVKRYIVTRAPRDSHAVMALLEKLDTAALARHRLVTIPLIK 228 Query: 237 EV 238 E+ Sbjct: 229 EL 230 >gi|88812592|ref|ZP_01127840.1| hypothetical protein NB231_08610 [Nitrococcus mobilis Nb-231] gi|88790186|gb|EAR21305.1| hypothetical protein NB231_08610 [Nitrococcus mobilis Nb-231] Length = 244 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 48/192 (25%), Positives = 80/192 (41%), Gaps = 16/192 (8%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL---EDIDLLDF 121 RV+ L G G GKS L ++ + + + L ++ R P LL E +D++ Sbjct: 52 RVIYLYGEPGVGKSHLLQAACGEASAWGRAVVYLPLRQLV--NRSPRLLQELEGVDVVAL 109 Query: 122 ND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 +D FH+ N + LLM P G+ LPDL SRL+ V+++ Sbjct: 110 DDLDCLTKAIEWQQAAFHLFNRLQDAGRELLMAGPRRPAKLGLALPDLVSRLQGVLVLRL 169 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 D+ + + R + + K A Y++ R + +L+DK D +L + Sbjct: 170 EKLGDEDNVLALSRRAQRRGLELPKATARYLLNHCRRDTGYFFQLLDKFDAASLQAQRRL 229 Query: 231 TRSLAAEVLKET 242 T +VL E Sbjct: 230 TVPFVKKVLAEA 241 >gi|325916438|ref|ZP_08178710.1| regulatory inactivation of DnaA Hda protein [Xanthomonas vesicatoria ATCC 35937] gi|325537358|gb|EGD09082.1| regulatory inactivation of DnaA Hda protein [Xanthomonas vesicatoria ATCC 35937] Length = 233 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 45/177 (25%), Positives = 78/177 (44%), Gaps = 12/177 (6%) Query: 67 VILVGPSGSGKSCLA----NIWSDKSRSTRFSNIAKSLDSI-----LIDTRKPVLLEDID 117 + L GP+G+GK+ LA R+T + + + + ++ R V L+ +D Sbjct: 44 LYLAGPAGTGKTHLALAVCAAAEQAGRATAYLPLQAAAGRLRDALEALEGRSLVALDGVD 103 Query: 118 LLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 + ++ LF N +SLL TAR P + LPDL SRL + + +PD Sbjct: 104 SIAGQRDDEVALFDFHNRARAAGTSLLYTARQMPDGLALILPDLRSRLSQCIRIGLPVPD 163 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231 D V+ R + +D +++ ER L L++++D +L+ IT Sbjct: 164 DAARAAVLRDRAQRRGLALDDAAIDWLLTHSERELATLVALLERLDRESLAAKRRIT 220 >gi|254496112|ref|ZP_05109011.1| DnaA-like family protein [Legionella drancourtii LLAP12] gi|254354653|gb|EET13289.1| DnaA-like family protein [Legionella drancourtii LLAP12] Length = 226 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 52/190 (27%), Positives = 94/190 (49%), Gaps = 16/190 (8%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFS-----NIAKSLDSILIDTRKP---VLLEDI 116 R++ L G SGSGKS L T+ + N+ K I+ + V ++DI Sbjct: 38 RLLYLWGASGSGKSHLLQASCQAVNLTQSAIYLPLNLLKEWGPQTIEGLEEQALVCIDDI 97 Query: 117 DLLDFN---DTQLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKI-S 171 D + + + LFH+ N I D LL+ + P + + LPDL SRL V+++ Sbjct: 98 DAIAEDSAWEEALFHLYNKIKDLDKGLLIISGNQSPTTLAIKLPDLRSRLSWGLVIQLME 157 Query: 172 LPDDDFLEKVIVKMFADRQIF-IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 L D+D + +K+ A R+ F + + + +++ R R++ ++L++++D+ +L+ I Sbjct: 158 LSDEDKIN--TLKLHALRRGFDLPESVGQFLLNRCSRNMHDLQQLLNRLDDASLAAQRKI 215 Query: 231 TRSLAAEVLK 240 T E LK Sbjct: 216 TIPFVKETLK 225 >gi|269468308|gb|EEZ79987.1| DnaA family protein [uncultured SUP05 cluster bacterium] Length = 224 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/197 (26%), Positives = 87/197 (44%), Gaps = 24/197 (12%) Query: 58 SWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------- 110 S PS VV + G SG++ L + F+ + + L+ ID + Sbjct: 35 STQKAPS-VVYVYGGKSSGRTHLL-------QGCAFAALKEKLEVTYIDFNQDLPDGVMD 86 Query: 111 -------VLLEDIDLLDFNDTQ-LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 V L++++ L+ N Q LF + N Q L+M+ P + L DL +RL Sbjct: 87 NLESLDWVCLDNVNCLNENQQQELFDLYNRSVQTQVKLIMSGDDLPTELNL-LKDLKTRL 145 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 AT+ + DDD ++VI +R I I+ K+ Y+ + R+L K +D +D Sbjct: 146 SLATIFHLESLDDDSKKEVIQSKMKNRNIAIENKVYDYLFKYYSRNLTDLLKAIDCLDEA 205 Query: 223 ALSRGMGITRSLAAEVL 239 +L + IT L +VL Sbjct: 206 SLQQKNNITIPLIKQVL 222 >gi|325924382|ref|ZP_08185921.1| regulatory inactivation of DnaA Hda protein [Xanthomonas gardneri ATCC 19865] gi|325545143|gb|EGD16458.1| regulatory inactivation of DnaA Hda protein [Xanthomonas gardneri ATCC 19865] Length = 233 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 86/179 (48%), Gaps = 16/179 (8%) Query: 67 VILVGPSGSGKSCLA-NIWSDKSRSTRFSN------IAKSLDSIL--IDTRKPVLLEDID 117 + L GP+G+GK+ LA ++ + ++ R S A L L ++ R V+L+ +D Sbjct: 44 LYLAGPAGTGKTHLALSLCAAAEQAGRASAYLPLHAAAGRLRDALEALEGRSLVVLDGLD 103 Query: 118 LLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP- 173 + ++ LF N ++LL TAR P + LPDL SRL + ++ISLP Sbjct: 104 TIAGQRDDEVALFDFHNRARAAGTTLLYTARQMPDGLALVLPDLRSRL--SQCIRISLPV 161 Query: 174 -DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231 DD V+ R + +D+ +++ ER L L+D++D +L+ IT Sbjct: 162 LDDAGRAAVLRDRAQRRGLALDEAAIDWLLIHSERELAGLVALLDRLDRESLAAKRRIT 220 >gi|188990770|ref|YP_001902780.1| hypothetical protein xccb100_1374 [Xanthomonas campestris pv. campestris str. B100] gi|167732530|emb|CAP50724.1| replication related protein [Xanthomonas campestris pv. campestris] Length = 233 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 84/171 (49%), Gaps = 16/171 (9%) Query: 69 LVGPSGSGKSCLA-NIWSDKSRSTRFSN------IAKSLDSIL--IDTRKPVLLEDIDLL 119 L GPSG+GK+ LA ++ + ++ R S A L L ++ R V L+ +D + Sbjct: 46 LAGPSGTGKTHLALSVCAAAEQAGRSSAYLPLQAAAGRLRDALEALEGRSVVALDGVDSI 105 Query: 120 DF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD-D 175 ++ LF N +LL TAR P + LPDL SRL + V+ISLP D Sbjct: 106 AGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRL--SQCVRISLPVLD 163 Query: 176 DFLEKVIVKMFADRQ-IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 D +++ A R+ + +D+ +++ ER L L+D++D +L+ Sbjct: 164 DVARAAVLRDRAQRRGLALDEAAIDWLLTHSERELAGLVALLDRLDRESLA 214 >gi|149378135|ref|ZP_01895854.1| DNA replication initiation factor [Marinobacter algicola DG893] gi|149357580|gb|EDM46083.1| DNA replication initiation factor [Marinobacter algicola DG893] Length = 238 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/171 (21%), Positives = 82/171 (47%), Gaps = 12/171 (7%) Query: 66 VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDI 116 V+ + G + +GKS L + + S+I S++ +L ++ + + L+D+ Sbjct: 51 VIAVCGDADTGKSHLLQAACHLAEQNQQSSICVSMEELLPLGPDSLSGLEGQSVICLDDL 110 Query: 117 DLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 DL+ + +FH+ N ++ + ++++ P S L DL SRL +++ + Sbjct: 111 DLIAGQENWEEAIFHLYNRVNDHGHLMVVSLSELPASLPFGLQDLVSRLSHGLTIQLGIH 170 Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 DD ++++ R + + +A +I++R R L ++D++D +L Sbjct: 171 RDDDRLRILMARAEQRGLVLSDDVAVFILRRAPRKLADLLAILDRLDENSL 221 >gi|21232217|ref|NP_638134.1| hypothetical protein XCC2786 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767654|ref|YP_242416.1| hypothetical protein XC_1327 [Xanthomonas campestris pv. campestris str. 8004] gi|21113975|gb|AAM42058.1| replication related protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572986|gb|AAY48396.1| replication related protein [Xanthomonas campestris pv. campestris str. 8004] Length = 233 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 84/171 (49%), Gaps = 16/171 (9%) Query: 69 LVGPSGSGKSCLA-NIWSDKSRSTRFSN------IAKSLDSIL--IDTRKPVLLEDIDLL 119 L GPSG+GK+ LA ++ + ++ R S A L L ++ R V L+ +D + Sbjct: 46 LAGPSGTGKTHLALSVCAAAEQAGRSSAYLPLQAAAGRLRDALEALEGRSLVALDGVDSI 105 Query: 120 DF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD-D 175 ++ LF N +LL TAR P + LPDL SRL + V+ISLP D Sbjct: 106 AGQCEDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRL--SQCVRISLPVLD 163 Query: 176 DFLEKVIVKMFADRQ-IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 D +++ A R+ + +D+ +++ ER L L+D++D +L+ Sbjct: 164 DVARAAVLRDRAQRRGLALDEAAIDWLLTHSERELAGLVALLDRLDRESLA 214 >gi|319944441|ref|ZP_08018715.1| DNA replication initiation protein A [Lautropia mirabilis ATCC 51599] gi|319742402|gb|EFV94815.1| DNA replication initiation protein A [Lautropia mirabilis ATCC 51599] Length = 219 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 45/183 (24%), Positives = 85/183 (46%), Gaps = 21/183 (11%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 R + GP GSGKS LA + +++ N+ ++++D+D Sbjct: 48 RFFYIWGPEGSGKSHLAGALT----ASQCPNL--------------MVVDDVDRYSKGRQ 89 Query: 125 Q-LFHIINS-IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 + LFH N+ I Q D +L++ P + LP+L SRL V + DD+ L + Sbjct: 90 RTLFHRFNALIDQPDHALVVFGNQPPARLKL-LPELVSRLSWGMVFSLQPLDDNALADAL 148 Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + +R + + + L+ Y+++ R + + ++D +D LA +R +T L + L+ Sbjct: 149 EQSARERGLNLGQDLSTYLLRHTRRDMASLKTILDGLDRLAWARKKPLTLPLLKDYLQSQ 208 Query: 243 QQC 245 +Q Sbjct: 209 RQA 211 >gi|85711719|ref|ZP_01042776.1| ATPase involved in DNA replication initiation [Idiomarina baltica OS145] gi|85694579|gb|EAQ32520.1| ATPase involved in DNA replication initiation [Idiomarina baltica OS145] Length = 242 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 53/190 (27%), Positives = 90/190 (47%), Gaps = 17/190 (8%) Query: 65 RVVILVGPSGSGKS-CLANIWSDKSRSTRF----------SNIAKSLDSILIDTRKPVLL 113 R+ +L GPSGSGKS L +I S + T+ SN + L + D + L Sbjct: 53 RLTLLSGPSGSGKSHLLHSIVSLAGQHTQVMYLPLADLKESNAEQVLAGL--DAFNIICL 110 Query: 114 EDIDLLDFNDT---QLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 +DID + + T +LF +IN+I + L+MTA V L DL SRL+ AT + Sbjct: 111 DDIDTVLKDPTWCYELFKLINTITDAEHCRLMMTAHASASQLSVELADLRSRLQWATAFQ 170 Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229 +S +DD + R + + +A +++ R+ R + +D++D +++ Sbjct: 171 LSPLNDDGKASALTLRAQWRGLQLPHDVAIFMLHRLGRDMAGLLAHLDQLDKASIAHQRK 230 Query: 230 ITRSLAAEVL 239 +T +VL Sbjct: 231 LTIPFVKQVL 240 >gi|39996180|ref|NP_952131.1| chromosomal replication initiator protein DnaA, truncation [Geobacter sulfurreducens PCA] gi|39982945|gb|AAR34404.1| chromosomal replication initiator protein DnaA, truncation [Geobacter sulfurreducens PCA] Length = 258 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 67/261 (25%), Positives = 99/261 (37%), Gaps = 44/261 (16%) Query: 13 PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVR----LIDSWPSWPSRVVI 68 P K ++ +P QL F FP S D+ ++ + E A R L D S ++ Sbjct: 5 PGKARSSRP-FPAMQLVFDFPVTPKYSFDNFVICAGNETACRFARRLTDE--SGSENLLY 61 Query: 69 LVGPSGSGKS--------CLAN-----------------IWSDKSRSTRFSNIAKSLDSI 103 L GPSGSGK+ C A I+ + + S +A+ Sbjct: 62 LHGPSGSGKTHLLMAMGACFAGRVGLRAVPCISFKDVDEIYHGEYPAEEVSRLAERFRG- 120 Query: 104 LIDTRKPVLLEDIDLLDFNDTQ-----LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158 P LL D DL D Q L+ + N +Q + +T P L Sbjct: 121 -----APALLVD-DLHLIPDQQSVRVELWQLFNDFYQAGRPIAITGLNPPNELPTLDGHL 174 Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218 SRL V K + DDD +++ K+ DRQI + Y++ + R + +D Sbjct: 175 TSRLLWGLVAKTDISDDDSRRRIMQKLADDRQIILPADAVDYLLVHVRRDVPSLVAALDA 234 Query: 219 MDNLALSRGMGITRSLAAEVL 239 + A S IT LA E L Sbjct: 235 ITRYAFSAKRKITMRLAREAL 255 >gi|91792999|ref|YP_562650.1| DNA replication initiation factor [Shewanella denitrificans OS217] gi|91715001|gb|ABE54927.1| regulatory inactivation of DnaA Hda protein [Shewanella denitrificans OS217] Length = 236 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 44/190 (23%), Positives = 93/190 (48%), Gaps = 13/190 (6%) Query: 64 SRVVILVGPSGSGKSCLAN----IWSDKSRSTRFS--NIAKSLDSIL---IDTRKPVLLE 114 S + + GP SG++ L + + +DK R T + I S+ L +++ + + ++ Sbjct: 46 SSSLYIYGPVKSGRTHLMHAACALANDKDRRTLYIPLGIHASISPALFEGLESLELICID 105 Query: 115 DIDLLDFN---DTQLFHIINSIHQY-DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 DID + + + +FH+ N I ++ D L+++ + P G LPDL SR++ + ++ Sbjct: 106 DIDAIAGHPIWEEAIFHLYNRIAEHKDCHLIVSGKASPTEAGFLLPDLVSRMQWGLIYQL 165 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 DD + + A R + + ++ +++ RM R L ++DK+D ++ + Sbjct: 166 QPMADDEKLLALQRRAAMRGLQLSDEVGRFLLTRMARDLRTLFDVLDKLDKASMVHQRKL 225 Query: 231 TRSLAAEVLK 240 T E+L+ Sbjct: 226 TIPFIKEMLR 235 >gi|315126230|ref|YP_004068233.1| regulatory factor involved in inactivation of DnaA [Pseudoalteromonas sp. SM9913] gi|315014744|gb|ADT68082.1| regulatory factor involved in inactivation of DnaA [Pseudoalteromonas sp. SM9913] Length = 228 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 47/190 (24%), Positives = 86/190 (45%), Gaps = 16/190 (8%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLED 115 + L G SGKS L +++ SN+ S+ ++ ++ + ++D Sbjct: 40 QYTYLCGLGDSGKSHLLYATCIQAQERGLSNMLLSMREVIHFGPMVLDGLEALDVLCIDD 99 Query: 116 IDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 + L+ ND LF+ N ++ + L++TA P + LPDL SRLK T +I Sbjct: 100 VHLVAGNDAWEKALFNFFNRFNEPNKMLVVTADLLPNMLNISLPDLESRLKWGTTFQIRS 159 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232 DD + +VK R + + + A +++ R+ R + ++DK+D+ + M R Sbjct: 160 MSDDDKAQALVKRANMRGLELSDECARFLLTRLSRDMRALLDVLDKLDHAS----MAAQR 215 Query: 233 SLAAEVLKET 242 L +K T Sbjct: 216 KLTIPFIKST 225 >gi|77360843|ref|YP_340418.1| regulatory factor involved in inactivation of DnaA [Pseudoalteromonas haloplanktis TAC125] gi|76875754|emb|CAI86975.1| putative regulatory factor involved in inactivation of DnaA [Pseudoalteromonas haloplanktis TAC125] Length = 228 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 86/191 (45%), Gaps = 18/191 (9%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL--LEDIDLLDFN 122 + L G SGKS L +++ SN+ S+ + ID VL LE +D+L + Sbjct: 40 QYTYLCGLGDSGKSHLLYATCIQAQERGLSNMLLSMREV-IDFGPMVLEGLEALDVLCID 98 Query: 123 DTQL-----------FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 D L F+ N ++ L++TA P + LPDL SRLK T ++I Sbjct: 99 DVHLVAGDDAWEKALFNFFNRFNEPKKMLVVTADLLPDMLNISLPDLESRLKWGTTLQIR 158 Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231 DD + +VK R + + + A +++ R+ R + ++DK+D+ + M Sbjct: 159 SMSDDDKAQALVKRTKMRGLELSDECARFLLTRLSRDMRTLLDVLDKLDHAS----MAAQ 214 Query: 232 RSLAAEVLKET 242 R L +K T Sbjct: 215 RKLTIPFIKST 225 >gi|152987343|ref|YP_001349911.1| DNA replication initiation factor [Pseudomonas aeruginosa PA7] gi|150962501|gb|ABR84526.1| DnaA regulatory inactivator Hda [Pseudomonas aeruginosa PA7] Length = 234 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 51/209 (24%), Positives = 95/209 (45%), Gaps = 18/209 (8%) Query: 47 SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI-------WSDKSRSTRFSNIAKS 99 +A+ RL ++ W ++ L G G G+S L + +++ +++ + Sbjct: 28 AALGYVERLCEAEAGWAESLIYLWGHDGVGRSHLLQAACLRFEQFEERTIYLPMADLVQY 87 Query: 100 LDSILIDTRKP--VLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 I D + V ++D+D+L + LFH+ N + LL+ A P V Sbjct: 88 GPEIFDDLEQCELVCIDDLDVLVGKRNWEEGLFHLFNRLRDTGRRLLLAASKSPRELQVK 147 Query: 155 LPDLCSRLKAATVVKI-SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213 LPDL SRL A + ++ L D+D L + ++ + R + + ++ +I+ R RS+ Sbjct: 148 LPDLKSRLTMALIFQLHGLSDEDKLRALQLRA-SRRGLHLTDEVGRFILNRGSRSMNSLF 206 Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKET 242 L++++D +L R L LKET Sbjct: 207 DLLEQLDRASLQ----AQRKLTIPFLKET 231 >gi|88706615|ref|ZP_01104318.1| DnaA-like protein hda [Congregibacter litoralis KT71] gi|88699111|gb|EAQ96227.1| DnaA-like protein hda [Congregibacter litoralis KT71] Length = 234 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 44/185 (23%), Positives = 82/185 (44%), Gaps = 19/185 (10%) Query: 69 LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID---LLDFNDTQ 125 L G +G GKS L + + +A+ L LLE+++ LL ++ + Sbjct: 53 LHGAAGEGKSHLLQALCHATAGALYLPLAE-----LRGAHPGALLENLETAALLALDNLE 107 Query: 126 -----------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 LFH++N L + AR+ + G+ LPDL SRL ++ + Sbjct: 108 HIAGDGEWEEALFHLMNRARAAQCPLWVAARSPAMDLGIELPDLRSRLGGGVTWAMTPAN 167 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234 D+ + +++ R + + +A+Y+ R R+L ++++DN +L R +T L Sbjct: 168 DEEMRRILQFRAERRGLAMPDAVASYLCARETRALGDLMDTLNRLDNASLQRQRPLTVPL 227 Query: 235 AAEVL 239 EV+ Sbjct: 228 VREVM 232 >gi|107100403|ref|ZP_01364321.1| hypothetical protein PaerPA_01001428 [Pseudomonas aeruginosa PACS2] gi|313105833|ref|ZP_07792096.1| hypothetical protein PA39016_000110130 [Pseudomonas aeruginosa 39016] gi|310878598|gb|EFQ37192.1| hypothetical protein PA39016_000110130 [Pseudomonas aeruginosa 39016] Length = 225 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 51/209 (24%), Positives = 95/209 (45%), Gaps = 18/209 (8%) Query: 47 SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI-------WSDKSRSTRFSNIAKS 99 +A+ RL ++ W ++ L G G G+S L + +++ +++ + Sbjct: 19 AALGYVERLCEAEAGWAESLIYLWGHDGVGRSHLLQAACLRFEQFEERTIYLPMADLVQY 78 Query: 100 LDSILIDTRKP--VLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 I D + V ++D+D+L + LFH+ N + LL+ A P V Sbjct: 79 GPEIFDDLEQCELVCIDDLDVLVGKREWEEGLFHLFNRLRDTGRRLLLAASKSPRELQVK 138 Query: 155 LPDLCSRLKAATVVKI-SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213 LPDL SRL A + ++ L D+D L + ++ + R + + ++ +I+ R RS+ Sbjct: 139 LPDLKSRLTMALIFQLHGLSDEDKLRALQLRA-SRRGLHLTDEVGRFILNRGSRSMNSLF 197 Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKET 242 L++++D +L R L LKET Sbjct: 198 DLLEQLDRASLQ----AQRKLTIPFLKET 222 >gi|330504184|ref|YP_004381053.1| DNA replication initiation factor [Pseudomonas mendocina NK-01] gi|328918469|gb|AEB59300.1| DNA replication initiation factor [Pseudomonas mendocina NK-01] Length = 234 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 51/214 (23%), Positives = 94/214 (43%), Gaps = 28/214 (13%) Query: 47 SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID 106 +A+ RL ++ W ++ L G G G+S L ++ RF +++ + + Sbjct: 28 AALGYVERLCEADAGWTESLIYLWGAEGVGRSHLL-----QAACLRFEQRGEAVVYLPLG 82 Query: 107 ---TRKPVLLEDIDLLDFN--------------DTQLFHIINSIHQYDSSLLMTARTFPV 149 P LL++++L + + LFH+ N + LL+ P Sbjct: 83 EVVQHGPELLDNLELCELVCLDDLDAVAGRSDWEEGLFHLFNRLRDSGRRLLLAGTMSPR 142 Query: 150 SWGVCLPDLCSRLKAATVVKI-SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 + LPDL SRL A V ++ L D+D L + ++ + R + + ++ +I+ R ERS Sbjct: 143 ELPIQLPDLKSRLTLALVFQLHELSDEDKLRALQLRA-SRRGLQMGDEVGRFILTRGERS 201 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + L++++D +L R L LKET Sbjct: 202 MSALFDLLERLDQASLQ----AQRKLTIPFLKET 231 >gi|15596144|ref|NP_249638.1| DNA replication initiation factor [Pseudomonas aeruginosa PAO1] gi|116048871|ref|YP_792328.1| DNA replication initiation factor [Pseudomonas aeruginosa UCBPP-PA14] gi|218893083|ref|YP_002441952.1| DNA replication initiation factor [Pseudomonas aeruginosa LESB58] gi|254239298|ref|ZP_04932621.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|254245231|ref|ZP_04938553.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|296390698|ref|ZP_06880173.1| DNA replication initiation factor [Pseudomonas aeruginosa PAb1] gi|9946853|gb|AAG04336.1|AE004529_2 conserved hypothetical protein [Pseudomonas aeruginosa PAO1] gi|115584092|gb|ABJ10107.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14] gi|126171229|gb|EAZ56740.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|126198609|gb|EAZ62672.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|218773311|emb|CAW29123.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58] Length = 234 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 51/209 (24%), Positives = 95/209 (45%), Gaps = 18/209 (8%) Query: 47 SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI-------WSDKSRSTRFSNIAKS 99 +A+ RL ++ W ++ L G G G+S L + +++ +++ + Sbjct: 28 AALGYVERLCEAEAGWAESLIYLWGHDGVGRSHLLQAACLRFEQFEERTIYLPMADLVQY 87 Query: 100 LDSILIDTRKP--VLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 I D + V ++D+D+L + LFH+ N + LL+ A P V Sbjct: 88 GPEIFDDLEQCELVCIDDLDVLVGKREWEEGLFHLFNRLRDTGRRLLLAASKSPRELQVK 147 Query: 155 LPDLCSRLKAATVVKI-SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213 LPDL SRL A + ++ L D+D L + ++ + R + + ++ +I+ R RS+ Sbjct: 148 LPDLKSRLTMALIFQLHGLSDEDKLRALQLRA-SRRGLHLTDEVGRFILNRGSRSMNSLF 206 Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKET 242 L++++D +L R L LKET Sbjct: 207 DLLEQLDRASLQ----AQRKLTIPFLKET 231 >gi|332534259|ref|ZP_08410104.1| chromosomal replication initiator protein DnaA [Pseudoalteromonas haloplanktis ANT/505] gi|332036339|gb|EGI72810.1| chromosomal replication initiator protein DnaA [Pseudoalteromonas haloplanktis ANT/505] Length = 236 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 84/191 (43%), Gaps = 18/191 (9%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL--LEDIDLLDFN 122 + L G SGKS L K++ SN+ S+ + ID VL LE +D+L + Sbjct: 48 QYTYLCGLGDSGKSHLLYATCIKAQERGLSNMLLSMREV-IDFGPMVLDGLEALDVLCID 106 Query: 123 DTQL-----------FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 D L F+ N ++ L++TA P + LPDL SRL T +I Sbjct: 107 DVHLVAGNDAWEKALFNFFNRFNEPGKMLVVTADLLPSMLNISLPDLESRLTWGTTFQIR 166 Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231 DD + +VK R + + + A +++ R+ R + ++DK+D+ + M Sbjct: 167 SMSDDDKAQALVKRAHMRGLELSDECARFLLTRLSRDMRALLDVLDKLDHAS----MAAQ 222 Query: 232 RSLAAEVLKET 242 R L +K T Sbjct: 223 RKLTIPFIKST 233 >gi|146308015|ref|YP_001188480.1| DNA replication initiation factor [Pseudomonas mendocina ymp] gi|145576216|gb|ABP85748.1| regulatory inactivation of DnaA Hda protein [Pseudomonas mendocina ymp] Length = 234 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 52/214 (24%), Positives = 93/214 (43%), Gaps = 28/214 (13%) Query: 47 SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS---LDSI 103 +A+ RL ++ W ++ L G G G+S L ++ RF + L Sbjct: 28 AALGYVERLCEADAGWTESLIYLWGAEGVGRSHLL-----QAACLRFEQRGDAVVYLPLT 82 Query: 104 LIDTRKPVLLEDIDLLDFN--------------DTQLFHIINSIHQYDSSLLMTARTFPV 149 + P LL++++L + + LFH+ N + LL+ P Sbjct: 83 EVVQHGPELLDNLELCELVCLDDLDAVAGRSDWEEGLFHLFNRLRDSGRRLLLAGTMSPR 142 Query: 150 SWGVCLPDLCSRLKAATVVKI-SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 + LPDL SRL A V ++ L D+D L + ++ + R + + ++ +I+ R ERS Sbjct: 143 ELPIQLPDLKSRLTLALVFQLHELSDEDKLRALQLRA-SRRGLQMSDEVGRFILTRGERS 201 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + +L++++D +L R L LKET Sbjct: 202 MSALFELLERLDQASLQ----AQRKLTIPFLKET 231 >gi|330941426|gb|EGH44239.1| DNA replication initiation factor [Pseudomonas syringae pv. pisi str. 1704B] Length = 234 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 55/214 (25%), Positives = 94/214 (43%), Gaps = 28/214 (13%) Query: 47 SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI--- 103 +A+ RL ++ W V+ L G G G++ L ++ RF + + + Sbjct: 28 AALGYVERLCEADAGWTQSVIYLWGKDGVGRTHLL-----QAACLRFEQLGEPAVYLPLA 82 Query: 104 -LIDTRKPVL--LEDIDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPV 149 +ID + LE +L+ +D Q LFH+ N + LL+ A P Sbjct: 83 EVIDEGIELFDHLEQYELVCLDDLQAIVGKPDWEEALFHLFNRLRDSGRRLLIAASKSPP 142 Query: 150 SWGVCLPDLCSRLKAATVVKI-SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 V LPDL SRL A V ++ L D+D L + ++ + R + + + +I+ R RS Sbjct: 143 QLPVKLPDLKSRLTMALVFQMRGLSDEDKLRALQLRA-SRRGLHLTDDVGHFILTRGTRS 201 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + +L++++D +L R L LKET Sbjct: 202 MSALFELLERLDQASLQE----KRKLTIPFLKET 231 >gi|331013495|gb|EGH93551.1| DNA replication initiation factor [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 234 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 54/214 (25%), Positives = 95/214 (44%), Gaps = 28/214 (13%) Query: 47 SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI--- 103 +A+ RL ++ W ++ L G G G++ L ++ RF + + + Sbjct: 28 AALGYVERLCEADAGWTESLIYLWGKDGVGRTHLL-----QAACLRFEQLGEPAVYLPLA 82 Query: 104 -LIDTRKPVL--LEDIDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPV 149 +ID + LE +L+ +D Q LFH+ N + LL+ A P Sbjct: 83 EVIDEGIELFDHLEQYELVCLDDLQAIVGKPEWEEALFHLFNRLRDSGRRLLIAASKSPP 142 Query: 150 SWGVCLPDLCSRLKAATVVKI-SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 V LPDL SRL A V ++ L D+D L + ++ + R + + ++ +I+ R RS Sbjct: 143 ELPVKLPDLKSRLTMALVFQMRGLSDEDKLRALQLRA-SRRGLHLTDEVGHFILTRGTRS 201 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + +L++++D +L R L LKET Sbjct: 202 MSALFELLERLDQASLQE----KRKLTIPFLKET 231 >gi|327481530|gb|AEA84840.1| DNA replication initiation factor [Pseudomonas stutzeri DSM 4166] Length = 234 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 54/209 (25%), Positives = 95/209 (45%), Gaps = 18/209 (8%) Query: 47 SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL--ANIWSDKSRST-----RFSNIAKS 99 +A+ RL W ++ L G G G+S L A + R + +A+ Sbjct: 28 AALGYVERLCSPAAGWSDELIYLWGQPGVGRSHLLQAACLRVEERGELAVYLPLAEVAEY 87 Query: 100 LDSIL--IDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 ++L ++ + V L+D+D + + + LFH+ N + LL+ A P + Sbjct: 88 GPALLDNLEQSELVCLDDLDAVAGDAIWEEALFHLFNRLRDAGRRLLLAADASPRELAIK 147 Query: 155 LPDLCSRLKAATVVKI-SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213 LPDL SRL A V ++ L D+D L + ++ + R + + + +I+ R RS+ Sbjct: 148 LPDLQSRLSLALVFQLQQLSDEDKLRALQLRA-SRRGLNLPDDVGRFILTRGSRSMNALF 206 Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKET 242 +L+D++D +L R L LKET Sbjct: 207 ELLDQLDQASLQ----AQRKLTIPFLKET 231 >gi|71734306|ref|YP_275849.1| DNA replication initiation factor [Pseudomonas syringae pv. phaseolicola 1448A] gi|257485896|ref|ZP_05639937.1| DNA replication initiation factor [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289628380|ref|ZP_06461334.1| DNA replication initiation factor [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289648134|ref|ZP_06479477.1| DNA replication initiation factor [Pseudomonas syringae pv. aesculi str. 2250] gi|298487973|ref|ZP_07006012.1| Chromosomal replication initiator protein dnaA [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71554859|gb|AAZ34070.1| DnaA family protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|298157524|gb|EFH98605.1| Chromosomal replication initiator protein dnaA [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320323391|gb|EFW79479.1| DNA replication initiation factor [Pseudomonas syringae pv. glycinea str. B076] gi|320327588|gb|EFW83600.1| DNA replication initiation factor [Pseudomonas syringae pv. glycinea str. race 4] gi|330866057|gb|EGH00766.1| DNA replication initiation factor [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330876426|gb|EGH10575.1| DNA replication initiation factor [Pseudomonas syringae pv. glycinea str. race 4] gi|330889389|gb|EGH22050.1| DNA replication initiation factor [Pseudomonas syringae pv. mori str. 301020] gi|330986707|gb|EGH84810.1| DNA replication initiation factor [Pseudomonas syringae pv. lachrymans str. M301315] Length = 234 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 54/214 (25%), Positives = 95/214 (44%), Gaps = 28/214 (13%) Query: 47 SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI--- 103 +A+ RL ++ W ++ L G G G++ L ++ RF + + + Sbjct: 28 AALGYVERLCEADAGWTESLIYLWGKDGVGRTHLL-----QAACLRFEQLGEPAVYLPLA 82 Query: 104 -LIDTRKPVL--LEDIDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPV 149 +ID + LE +L+ +D Q LFH+ N + LL+ A P Sbjct: 83 EVIDEGIELFDHLEQYELVCLDDLQAIVGKPEWEEALFHLFNRLRDSGRRLLIAASKSPR 142 Query: 150 SWGVCLPDLCSRLKAATVVKI-SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 V LPDL SRL A V ++ L D+D L + ++ + R + + ++ +I+ R RS Sbjct: 143 ELPVKLPDLKSRLTMALVFQMRGLSDEDKLRALQLRA-SRRGLHLTDEVGHFILTRGTRS 201 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + +L++++D +L R L LKET Sbjct: 202 MSALFELLERLDQASLQE----KRKLTIPFLKET 231 >gi|298505194|gb|ADI83917.1| DnaA regulatory inactivator Hda [Geobacter sulfurreducens KN400] Length = 242 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 62/245 (25%), Positives = 91/245 (37%), Gaps = 39/245 (15%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWP--SWPSRVVILVGPSGSGKS------ 78 QL F FP S D+ ++ + E A R S ++ L GPSGSGK+ Sbjct: 2 QLVFDFPVTPKYSFDNFVICAGNETACRFARRLTDESGSENLLYLHGPSGSGKTHLLMAM 61 Query: 79 --CLAN-----------------IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 C A I+ + + S +A+ P LL D DL Sbjct: 62 GACFAGRVGLRAVPCISFKDVDEIYHGEYPAEEVSRLAERFRG------APALLVD-DLH 114 Query: 120 DFNDTQ-----LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 D Q L+ + N +Q + +T P L SRL V K + D Sbjct: 115 LIPDQQSVRVELWQLFNDFYQAGRPIAITGLNPPNELPTLDGHLTSRLLWGLVAKTDISD 174 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234 DD +++ K+ DRQI + Y++ + R + +D + A S IT L Sbjct: 175 DDSRRRIMQKLADDRQIILPADAVDYLLVHVRRDVPSLVAALDAITRYAFSAKRKITMRL 234 Query: 235 AAEVL 239 A E L Sbjct: 235 AREAL 239 >gi|119472478|ref|ZP_01614577.1| putative regulatory factor involved in inactivation of DnaA [Alteromonadales bacterium TW-7] gi|119444915|gb|EAW26214.1| putative regulatory factor involved in inactivation of DnaA [Alteromonadales bacterium TW-7] Length = 241 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/190 (24%), Positives = 84/190 (44%), Gaps = 16/190 (8%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLED 115 + L G SGKS L K++ SN+ S+ ++ ++ + ++D Sbjct: 53 QYTYLCGLGDSGKSHLLYATCIKAQERGLSNMLLSMREVINFGPMVLDGLEALDVLCIDD 112 Query: 116 IDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 + L+ ND LF+ N ++ L++TA P + LPDL SRL T +I Sbjct: 113 VHLVAGNDAWEKALFNFFNRFNEPGKMLVVTADLLPNMLNISLPDLESRLTWGTTFQIRS 172 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232 DD + +VK R + + + A +++ R+ R + ++DK+D+ + M R Sbjct: 173 MSDDDKAQALVKRAHMRGLELSDECARFLLTRLSRDMRALLDVLDKLDHAS----MAAQR 228 Query: 233 SLAAEVLKET 242 L +K T Sbjct: 229 KLTIPFIKST 238 >gi|146283163|ref|YP_001173316.1| DNA replication initiation factor [Pseudomonas stutzeri A1501] gi|145571368|gb|ABP80474.1| DnaA family protein [Pseudomonas stutzeri A1501] Length = 223 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 54/209 (25%), Positives = 95/209 (45%), Gaps = 18/209 (8%) Query: 47 SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL--ANIWSDKSRSTR-----FSNIAKS 99 +A+ RL W ++ L G G G+S L A + R + +A+ Sbjct: 17 AALGYVERLCSPAAGWSDELIYLWGQRGVGRSHLLQAACLRVEERGELAVYLPLAEVAEY 76 Query: 100 LDSIL--IDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 ++L ++ + V L+D+D + + + LFH+ N + LL+ A P + Sbjct: 77 GPALLDNLEQSELVCLDDLDAVAGDAIWEEALFHLFNRLRDAGRRLLLAADASPRELAIK 136 Query: 155 LPDLCSRLKAATVVKI-SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213 LPDL SRL A V ++ L D+D L + ++ + R + + + +I+ R RS+ Sbjct: 137 LPDLQSRLSLALVFQLQQLSDEDKLRALQLRA-SRRGLNLPDDVGRFILTRGSRSMNALF 195 Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKET 242 +L+D++D +L R L LKET Sbjct: 196 ELLDQLDQASLQ----AQRKLTIPFLKET 220 >gi|330811200|ref|YP_004355662.1| DNA replication initiation factor [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379308|gb|AEA70658.1| Putative DNA replication initiation factor [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 234 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 54/214 (25%), Positives = 96/214 (44%), Gaps = 28/214 (13%) Query: 47 SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI--- 103 +A+ RL ++ W ++ L G G G++ L ++ RF + + + Sbjct: 28 AALGYVERLCEADAGWTESLIYLWGKDGVGRTHLL-----QAACLRFEQLGEPAVYLPLA 82 Query: 104 -LIDTRKPVL--LEDIDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPV 149 L+D +L LE +L+ +D Q LFH+ N + LL+ A T P Sbjct: 83 ELLDRGVEILDNLEQYELVCLDDLQAVAGKADWEEALFHLFNRLRDSGRRLLIAASTSPR 142 Query: 150 SWGVCLPDLCSRLKAATVVKIS-LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 V L DL SRL A + ++ L D+D L + ++ + R + + ++ +I+ R RS Sbjct: 143 ELPVKLADLKSRLTLALIFQMRPLSDEDKLRALQLRA-SRRGLHLTDEVGHFILTRGTRS 201 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + +L++++D +L R L LKET Sbjct: 202 MSALFELLERLDQASLQ----AQRKLTIPFLKET 231 >gi|330902626|gb|EGH33641.1| DNA replication initiation factor [Pseudomonas syringae pv. japonica str. M301072PT] Length = 207 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 54/214 (25%), Positives = 94/214 (43%), Gaps = 28/214 (13%) Query: 47 SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI--- 103 +A+ RL ++ W ++ L G G G++ L ++ RF + + + Sbjct: 1 AAVGYVERLCEADAGWAESLIYLWGKDGVGRTHLL-----QAACLRFEQLGEPAVYLPLA 55 Query: 104 -LIDTRKPVL--LEDIDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPV 149 +ID + LE +L+ +D Q LFH+ N + LL+ A P Sbjct: 56 EVIDEGIELFDHLEQYELVCLDDLQAIVGKPDWEEALFHLFNRLRDSGRRLLIAASKSPR 115 Query: 150 SWGVCLPDLCSRLKAATVVKI-SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 V LPDL SRL A V ++ L D+D L + ++ + R + + + +I+ R RS Sbjct: 116 ELPVKLPDLKSRLTMALVFQMRGLSDEDKLRALQLRA-SRRGLHLTDDVGHFILTRGTRS 174 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + +L++++D +L R L LKET Sbjct: 175 MSALFELLERLDQASLQE----KRKLTIPFLKET 204 >gi|167032278|ref|YP_001667509.1| DNA replication initiation factor [Pseudomonas putida GB-1] gi|166858766|gb|ABY97173.1| DnaA regulatory inactivator Hda [Pseudomonas putida GB-1] Length = 235 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/209 (23%), Positives = 95/209 (45%), Gaps = 18/209 (8%) Query: 47 SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL----ANIWSDKSRSTRFSNIAKSLDS 102 +A+ RL ++ W ++ L G G G+S L + + + + +A+ LD Sbjct: 29 AALGYVERLCEADAGWTESLIYLWGKQGVGRSHLLQAATHRFQQRGEPAVYLPLAQLLDR 88 Query: 103 IL-----IDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + + V ++D+ ++ + +FH+ N + LL+ A P V Sbjct: 89 GVGLLDYLAQYELVCIDDLHVIAGKADWEEAMFHLFNRLRDSGRRLLLAASASPRELPVK 148 Query: 155 LPDLCSRLKAATVVKI-SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213 LPDL SRL A V ++ L D+D L + ++ + R + + ++ +I+ R RS+ Sbjct: 149 LPDLKSRLTLALVFQMRGLSDEDKLRALQLRA-SRRGLHLTDEVGHFILTRGARSMSALF 207 Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKET 242 L++++D +L R L LKET Sbjct: 208 DLLERLDQASLQ----AQRKLTIPFLKET 232 >gi|114332207|ref|YP_748429.1| hypothetical protein Neut_2247 [Nitrosomonas eutropha C91] gi|114309221|gb|ABI60464.1| regulatory inactivation of DnaA Hda protein [Nitrosomonas eutropha C91] Length = 221 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 51/184 (27%), Positives = 91/184 (49%), Gaps = 13/184 (7%) Query: 65 RVVILVGPSGSGKSCL----ANIWSDKSRSTRF--SNIAKSLDSILIDTRKPVLLEDIDL 118 R L G +GSGKS L NI+ ++ R+T + N A +D L T + +++I+ Sbjct: 42 RFYYLWGNTGSGKSHLLQAVTNIFMEQQRNTHYIDCNQADEIDFNL--TADCIAVDNIEQ 99 Query: 119 LD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI-SLPDDD 176 LD +LF++ N I + + + T P + PDL +RL V ++ L D+ Sbjct: 100 LDDAEQIRLFNLYNQIRESKYGIFLAGGTRPPAQLGLRPDLTTRLGWGLVYQVHELTDEK 159 Query: 177 FLEKVIVKMFADRQIF-IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235 +E +++ +A R F + + Y+++ +R L + V +D L+L+R +T L Sbjct: 160 KIE--VMQDYAIRCGFELPLDVCNYLLKHEQRDLSSLIRQVSALDQLSLTRQRPVTLPLL 217 Query: 236 AEVL 239 E+L Sbjct: 218 RELL 221 >gi|49081928|gb|AAT50364.1| PA0947 [synthetic construct] Length = 235 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 54/216 (25%), Positives = 92/216 (42%), Gaps = 32/216 (14%) Query: 47 SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID 106 +A+ RL ++ W ++ L G G G+S L ++ RF + +I + Sbjct: 28 AALGYVERLCEAEAGWAESLIYLWGHDGVGRSHLL-----QAACLRFEQFEER--TIYLP 80 Query: 107 TRKPVL--------LEDIDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTF 147 PV LE +L+ +D LFH+ N + LL+ A Sbjct: 81 MADPVQYGPEIFDDLEQCELVCIDDLDVLVGKREWEEGLFHLFNRLRDTGRRLLLAASKS 140 Query: 148 PVSWGVCLPDLCSRLKAATVVKI-SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206 P V LPDL SRL A + ++ L D+D L + ++ + R + + ++ +I+ R Sbjct: 141 PRELQVKLPDLKSRLTMALIFQLHGLSDEDKLRALQLRA-SRRGLHLTDEVGRFILNRGS 199 Query: 207 RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 RS+ L++++D +L R L LKET Sbjct: 200 RSMNSLFDLLEQLDRASLQ----AQRKLTIPFLKET 231 >gi|70731783|ref|YP_261525.1| DNA replication initiation factor [Pseudomonas fluorescens Pf-5] gi|68346082|gb|AAY93688.1| DnaA family protein [Pseudomonas fluorescens Pf-5] Length = 234 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 54/214 (25%), Positives = 96/214 (44%), Gaps = 28/214 (13%) Query: 47 SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI--- 103 +A+ RL ++ W ++ L G G G++ L ++ RF + + + Sbjct: 28 AALGYVERLCEADAGWTESLIYLWGKDGVGRTHLL-----QAACLRFEQLGEPAVYLPLA 82 Query: 104 -LIDTRKPVL--LEDIDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPV 149 L+D +L LE +L+ +D Q LFH+ N + LL+ A T P Sbjct: 83 ELLDRGIEILDNLEQYELVCLDDLQAVAGKADWEEALFHLFNRLRDSGRRLLIAASTSPR 142 Query: 150 SWGVCLPDLCSRLKAATVVKIS-LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 V L DL SRL A + ++ L D+D L + ++ + R + + ++ +I+ R RS Sbjct: 143 ELPVKLADLKSRLTLALIFQMRPLSDEDKLRALQLRA-SRRGLHLTDEVGHFILTRGTRS 201 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + +L++++D +L R L LKET Sbjct: 202 MSALFELLERLDQASLQ----AQRKLTIPFLKET 231 >gi|262368617|ref|ZP_06061946.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] gi|262316295|gb|EEY97333.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] Length = 234 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 69/147 (46%), Gaps = 17/147 (11%) Query: 71 GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL-IDTRKPVLLEDIDLLDFNDTQ---- 125 G +GSGKS L + D S I SL +L T LE DL+ +D + Sbjct: 46 GGAGSGKSHLLSAICDSYLDVGKSAIQVSLLELLDAPTEAITSLERFDLVALDDIEAISG 105 Query: 126 -------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178 +FH+IN ++ L+ ++R P+ + LPDL SRL A VK+ P+ Sbjct: 106 VPHWQKAVFHLINYNNEEGGQLVFSSRVAPIELKLELPDLQSRLTQAVSVKV--PNGSLY 163 Query: 179 ---EKVIVKMFADRQIFIDKKLAAYIV 202 +++ + + R I ID+++ Y++ Sbjct: 164 ADRSTLVMSVLSRRGIHIDQQIIDYLL 190 >gi|66046915|ref|YP_236756.1| DNA replication initiation factor [Pseudomonas syringae pv. syringae B728a] gi|63257622|gb|AAY38718.1| DnaA family protein [Pseudomonas syringae pv. syringae B728a] Length = 261 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 54/214 (25%), Positives = 94/214 (43%), Gaps = 28/214 (13%) Query: 47 SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI--- 103 +A+ RL ++ W ++ L G G G++ L ++ RF + + + Sbjct: 55 AALGYVERLCEADAGWTESLIYLWGKDGVGRTHLL-----QAACLRFEQLGEPAVYLPLA 109 Query: 104 -LIDTRKPVL--LEDIDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPV 149 +ID + LE +L+ +D Q LFH+ N + LL+ A P Sbjct: 110 EVIDEGIELFDHLEQYELVCLDDLQAIVGKPDWEEALFHLFNRLRDSGRRLLIAASKSPR 169 Query: 150 SWGVCLPDLCSRLKAATVVKI-SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 V LPDL SRL A V ++ L D+D L + ++ + R + + + +I+ R RS Sbjct: 170 ELPVKLPDLKSRLTMALVFQMRGLSDEDKLRALQLRA-SRRGLHLTDDVGHFILTRGTRS 228 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + +L++++D +L R L LKET Sbjct: 229 MSALFELLERLDQASLQE----KRKLTIPFLKET 258 >gi|58580923|ref|YP_199939.1| hypothetical protein XOO1300 [Xanthomonas oryzae pv. oryzae KACC10331] gi|84622858|ref|YP_450230.1| hypothetical protein XOO_1201 [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188578097|ref|YP_001915026.1| hypothetical protein PXO_02244 [Xanthomonas oryzae pv. oryzae PXO99A] gi|58425517|gb|AAW74554.1| replication related protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84366798|dbj|BAE67956.1| replication related protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188522549|gb|ACD60494.1| replication related protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 233 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 88/191 (46%), Gaps = 16/191 (8%) Query: 67 VILVGPSGSGKSCLA-NIWSDKSRSTRFSN------IAKSLDSIL--IDTRKPVLLEDID 117 + L GP+GSGK+ LA ++ + ++ R S A L L ++ R V L+ ++ Sbjct: 44 LYLSGPAGSGKTHLALSLCAAAEQAGRMSAYLPLQAAAGRLRDALEALEGRSLVALDGVE 103 Query: 118 LLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP- 173 + ++ LF N +LL TAR P + LPDL SRL + ++I LP Sbjct: 104 SIAGQRDDEVALFDFHNRARAAGITLLYTARQMPNGLALVLPDLRSRL--SQCIRIGLPV 161 Query: 174 -DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232 DD V+ R + +D+ +++ ER L L+D++D +L+ IT Sbjct: 162 LDDAARAAVLRDRAQRRGLAMDEAAIDWLLTHGERELARLVALLDRLDRESLAAKRRITV 221 Query: 233 SLAAEVLKETQ 243 VL++ + Sbjct: 222 PFLRRVLEDRR 232 >gi|26988400|ref|NP_743825.1| DNA replication initiation factor [Pseudomonas putida KT2440] gi|148549256|ref|YP_001269358.1| DNA replication initiation factor [Pseudomonas putida F1] gi|24983155|gb|AAN67289.1|AE016355_7 DnaA family protein [Pseudomonas putida KT2440] gi|148513314|gb|ABQ80174.1| regulatory inactivation of DnaA Hda protein [Pseudomonas putida F1] gi|313500166|gb|ADR61532.1| DNA replication initiation factor [Pseudomonas putida BIRD-1] Length = 235 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/209 (23%), Positives = 95/209 (45%), Gaps = 18/209 (8%) Query: 47 SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL----ANIWSDKSRSTRFSNIAKSLDS 102 +A+ RL ++ W ++ L G G G+S L + + + + +A+ LD Sbjct: 29 AALGYVERLCEADAGWTESLIYLWGKQGVGRSHLLQAATHRFQQRGEPAVYLPLAQLLDR 88 Query: 103 IL-----IDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + + V ++D+ ++ + +FH+ N + LL+ A P + Sbjct: 89 GVELLDYLAQYELVCIDDLHVIAGKADWEEAMFHLFNRLRDSGRRLLLAASASPRELPIK 148 Query: 155 LPDLCSRLKAATVVKI-SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213 LPDL SRL A V ++ L D+D L + ++ + R + + ++ +I+ R RS+ Sbjct: 149 LPDLKSRLTLALVFQMRGLSDEDKLRALQLRA-SRRGLHLTDEVGHFILTRGARSMSALF 207 Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKET 242 L++++D +L R L LKET Sbjct: 208 DLLERLDQASLQ----AQRKLTIPFLKET 232 >gi|166711228|ref|ZP_02242435.1| hypothetical protein Xoryp_07090 [Xanthomonas oryzae pv. oryzicola BLS256] Length = 233 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 88/191 (46%), Gaps = 16/191 (8%) Query: 67 VILVGPSGSGKSCLA-NIWSDKSRSTRFSN------IAKSLDSIL--IDTRKPVLLEDID 117 + L GP+GSGK+ LA ++ + ++ R S A L L ++ R V L+ ++ Sbjct: 44 LYLSGPAGSGKTHLALSLCAAAEQAGRMSAYLPLQAAAGRLRDALEALEGRSLVALDGVE 103 Query: 118 LLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP- 173 + ++ LF N +LL TAR P + LPDL SRL + ++I LP Sbjct: 104 SIAGQRDDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRL--SQCIRIGLPV 161 Query: 174 -DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232 DD V+ R + +D+ +++ ER L L+D++D +L+ IT Sbjct: 162 LDDAARAAVLRDRAQRRGLALDEAAIDWLLTHGERELAGLVALLDRLDRESLAAKRRITV 221 Query: 233 SLAAEVLKETQ 243 VL++ + Sbjct: 222 PFLRRVLEDRR 232 >gi|28868909|ref|NP_791528.1| DnaA family protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213971898|ref|ZP_03399998.1| DnaA family protein [Pseudomonas syringae pv. tomato T1] gi|301384468|ref|ZP_07232886.1| DNA replication initiation factor [Pseudomonas syringae pv. tomato Max13] gi|302062183|ref|ZP_07253724.1| DNA replication initiation factor [Pseudomonas syringae pv. tomato K40] gi|302131786|ref|ZP_07257776.1| DNA replication initiation factor [Pseudomonas syringae pv. tomato NCPPB 1108] gi|302187852|ref|ZP_07264525.1| DNA replication initiation factor [Pseudomonas syringae pv. syringae 642] gi|28852148|gb|AAO55223.1| DnaA family protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213923323|gb|EEB56918.1| DnaA family protein [Pseudomonas syringae pv. tomato T1] gi|330877082|gb|EGH11231.1| DNA replication initiation factor [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330966590|gb|EGH66850.1| DNA replication initiation factor [Pseudomonas syringae pv. actinidiae str. M302091] gi|331016800|gb|EGH96856.1| DNA replication initiation factor [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 234 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 54/214 (25%), Positives = 94/214 (43%), Gaps = 28/214 (13%) Query: 47 SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI--- 103 +A+ RL ++ W ++ L G G G++ L ++ RF + + + Sbjct: 28 AALGYVERLCEADAGWTESLIYLWGKDGVGRTHLL-----QAACLRFEQLGEPAVYLPLA 82 Query: 104 -LIDTRKPVL--LEDIDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPV 149 +ID + LE +L+ +D Q LFH+ N + LL+ A P Sbjct: 83 EVIDEGIELFDHLEQYELVCLDDLQAIVGKPEWEEALFHLFNRLRDSGRRLLIAASKSPR 142 Query: 150 SWGVCLPDLCSRLKAATVVKI-SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 V LPDL SRL A V ++ L D+D L + ++ + R + + + +I+ R RS Sbjct: 143 ELPVKLPDLKSRLTMALVFQMRGLSDEDKLRALQLRA-SRRGLHLTDDVGHFILTRGTRS 201 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + +L++++D +L R L LKET Sbjct: 202 MSALFELLERLDQASLQE----KRKLTIPFLKET 231 >gi|330953483|gb|EGH53743.1| DNA replication initiation factor [Pseudomonas syringae Cit 7] gi|330972385|gb|EGH72451.1| DNA replication initiation factor [Pseudomonas syringae pv. aceris str. M302273PT] gi|330980218|gb|EGH78371.1| DNA replication initiation factor [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 234 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 54/214 (25%), Positives = 94/214 (43%), Gaps = 28/214 (13%) Query: 47 SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI--- 103 +A+ RL ++ W ++ L G G G++ L ++ RF + + + Sbjct: 28 AALGYVERLCEADAGWTESLIYLWGKDGVGRTHLL-----QAACLRFEQLGEPAVYLPLA 82 Query: 104 -LIDTRKPVL--LEDIDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPV 149 +ID + LE +L+ +D Q LFH+ N + LL+ A P Sbjct: 83 EVIDEGIELFDHLEQYELVCLDDLQAIVGKPDWEEALFHLFNRLRDSGRRLLIAASKSPR 142 Query: 150 SWGVCLPDLCSRLKAATVVKI-SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 V LPDL SRL A V ++ L D+D L + ++ + R + + + +I+ R RS Sbjct: 143 ELPVKLPDLKSRLTMALVFQMRGLSDEDKLRALQLRA-SRRGLHLTDDVGHFILTRGTRS 201 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + +L++++D +L R L LKET Sbjct: 202 MSALFELLERLDQASLQE----KRKLTIPFLKET 231 >gi|89095234|ref|ZP_01168156.1| DnaA family protein [Oceanospirillum sp. MED92] gi|89080488|gb|EAR59738.1| DnaA family protein [Oceanospirillum sp. MED92] Length = 234 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/116 (26%), Positives = 55/116 (47%) Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 + LFH N I + ++L++ + + P G+ LPDL SRL V ++ DD K I Sbjct: 116 EVALFHFFNRIREQGNTLVIASTSAPRYLGISLPDLASRLSWGMVFQVQPLSDDTKLKAI 175 Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238 + R + ++A +++ R++ L+D +D +LS +T EV Sbjct: 176 QMRASARGLEFSDEVARFLLHHASRNMNDLTSLLDTLDQASLSAKRKVTIPFIKEV 231 >gi|330960588|gb|EGH60848.1| DNA replication initiation factor [Pseudomonas syringae pv. maculicola str. ES4326] Length = 234 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 54/214 (25%), Positives = 94/214 (43%), Gaps = 28/214 (13%) Query: 47 SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI--- 103 +A+ RL ++ W ++ L G G G++ L ++ RF + + + Sbjct: 28 AALGYVERLCEADAGWTESLIYLWGKDGVGRTHLL-----QAACLRFEQMGEPAVYLPLA 82 Query: 104 -LIDTRKPVL--LEDIDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPV 149 +ID + LE +L+ +D Q LFH+ N + LL+ A P Sbjct: 83 EVIDEGIELFDHLEQYELVCLDDLQAVVGKPDWEEALFHLFNRLRDSGRRLLIAASKSPR 142 Query: 150 SWGVCLPDLCSRLKAATVVKI-SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 V LPDL SRL A V ++ L D+D L + ++ + R + + + +I+ R RS Sbjct: 143 ELPVKLPDLKSRLTMALVFQMRGLSDEDKLRALQLRA-SRRGLHLTDDVGHFILTRGTRS 201 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + +L++++D +L R L LKET Sbjct: 202 MSALFELLERLDQASLQE----KRKLTIPFLKET 231 >gi|237798977|ref|ZP_04587438.1| DNA replication initiation factor [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021831|gb|EGI01888.1| DNA replication initiation factor [Pseudomonas syringae pv. oryzae str. 1_6] Length = 234 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 54/214 (25%), Positives = 94/214 (43%), Gaps = 28/214 (13%) Query: 47 SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI--- 103 +A+ RL ++ W ++ L G G G++ L ++ RF + + + Sbjct: 28 AALGYVERLCEADAGWTESLIYLWGKDGVGRTHLL-----QAACLRFEQMGEPAVYLPMA 82 Query: 104 -LIDTRKPVL--LEDIDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPV 149 +ID + LE +L+ +D Q LFH+ N + LL+ A P Sbjct: 83 EVIDEGIELFDHLEQYELVCLDDLQAVVGKPDWEEALFHLFNRLRDSGRRLLIAASKSPR 142 Query: 150 SWGVCLPDLCSRLKAATVVKI-SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 V LPDL SRL A V ++ L D+D L + ++ + R + + + +I+ R RS Sbjct: 143 ELPVKLPDLKSRLTMALVFQMRGLSDEDKLRALQLRA-SRRGLHLTDDVGHFILTRGTRS 201 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + +L++++D +L R L LKET Sbjct: 202 MSALFELLERLDQASLQE----KRKLTIPFLKET 231 >gi|56460576|ref|YP_155857.1| DNA replication initiation ATPase [Idiomarina loihiensis L2TR] gi|56179586|gb|AAV82308.1| ATPase involved in DNA replication initiation [Idiomarina loihiensis L2TR] Length = 237 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 51/186 (27%), Positives = 94/186 (50%), Gaps = 15/186 (8%) Query: 69 LVGPSGSGKSCLAN-IWSDKSRSTRFS-----NIAKSLDSIL---IDTRKPVLLEDIDLL 119 L G SG GKS L + + + R + +AK+ S + ID + L+DID + Sbjct: 52 LSGASGVGKSHLMHSVIASAGSQYRIAYLPLRELAKADASAVLQGIDQADLICLDDIDTV 111 Query: 120 DFNDT---QLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPD 174 +LF +IN + +S+ L+MTA+ V LPDL SR + AT ++ L D Sbjct: 112 TLEQNWSFELFSLINRVTDNESTRLVMTAKQSAAQTKVLLPDLQSRFQWATGFQVQPLND 171 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234 ++ + +I++ R + + +AA++ QR+ RS+ K ++++D +++ +T Sbjct: 172 EEKINALILRA-QWRGLELPNDVAAFMTQRLGRSMRDLMKALNELDKASITYQRRLTIPF 230 Query: 235 AAEVLK 240 +VL+ Sbjct: 231 VKQVLE 236 >gi|225077364|ref|ZP_03720563.1| hypothetical protein NEIFLAOT_02424 [Neisseria flavescens NRL30031/H210] gi|319638485|ref|ZP_07993247.1| DnaA-like protein [Neisseria mucosa C102] gi|224951292|gb|EEG32501.1| hypothetical protein NEIFLAOT_02424 [Neisseria flavescens NRL30031/H210] gi|317400234|gb|EFV80893.1| DnaA-like protein [Neisseria mucosa C102] Length = 222 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/187 (24%), Positives = 85/187 (45%), Gaps = 9/187 (4%) Query: 64 SRVVILVGPSGSGKSCLANIWS----DKSRSTRFSNIAKS-LDSILIDTRKPVLLEDIDL 118 + + + G G+GKS L W D R+ + + A + L +D + + ++ I+ Sbjct: 36 GQFIYVWGEEGAGKSHLLQAWVAQALDAGRNALYIDAAATPLTEAALDA-EYLAIDQIEK 94 Query: 119 LDFNDTQ--LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 L+ N+ Q LF I N L+ + + V DL +R+ V ++ D Sbjct: 95 LN-NEEQALLFAIFNRFRNSGKGFLLLSSEYTPQQLVIREDLRTRMAYCLVYEVKPLTDR 153 Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236 +V M A RQ+ ID ++ Y++ R + +++D +DN A+ G IT L Sbjct: 154 EKIDALVSMAAARQVTIDPEIFEYLLNHWRRDMDSLMQMLDTLDNYAVMMGKRITLPLLR 213 Query: 237 EVLKETQ 243 ++LK+ + Sbjct: 214 QLLKQQE 220 >gi|170720412|ref|YP_001748100.1| DNA replication initiation factor [Pseudomonas putida W619] gi|169758415|gb|ACA71731.1| DnaA regulatory inactivator Hda [Pseudomonas putida W619] Length = 235 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 48/209 (22%), Positives = 96/209 (45%), Gaps = 18/209 (8%) Query: 47 SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL----ANIWSDKSRSTRFSNIAKSLDS 102 +A+ RL ++ W ++ L G G G+S L + + + + + +A+ L+ Sbjct: 29 AALGYVERLCEADAGWTESLIYLWGKQGVGRSHLLQAATHRFQQRGEAAVYLPLAQLLER 88 Query: 103 IL-----IDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + + V ++D+ ++ + +FH+ N + LL+ A P + Sbjct: 89 GIGLLDYLAQYELVCIDDLHVIAGKAEWEEAMFHLFNRLRDSGRRLLLAASASPRELPIR 148 Query: 155 LPDLCSRLKAATVVKI-SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213 LPDL SRL A V ++ L D+D L + ++ + R + + ++ +I+ R RS+ Sbjct: 149 LPDLKSRLTLALVFQMRGLSDEDKLRALQLRA-SRRGLHLTDEVGHFILTRGTRSMSALF 207 Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKET 242 L++++D +L R L LKET Sbjct: 208 DLLERLDQASLQ----AQRKLTIPFLKET 232 >gi|261380274|ref|ZP_05984847.1| DnaA regulatory inactivator Hda [Neisseria subflava NJ9703] gi|284797135|gb|EFC52482.1| DnaA regulatory inactivator Hda [Neisseria subflava NJ9703] Length = 222 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/187 (24%), Positives = 85/187 (45%), Gaps = 9/187 (4%) Query: 64 SRVVILVGPSGSGKSCLANIWS----DKSRSTRFSNIAKS-LDSILIDTRKPVLLEDIDL 118 + + + G G+GKS L W D R+ + + A + L +D + + ++ I+ Sbjct: 36 GQCIYVWGEEGAGKSHLLQAWVAQALDAGRNALYIDAAATPLTEAALDA-EYLAIDQIEK 94 Query: 119 LDFNDTQ--LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 L+ N+ Q LF I N L+ + + V DL +R+ V ++ D Sbjct: 95 LN-NEEQALLFAIFNRFRNSGKGFLLLSSEYTPQQLVIREDLRTRMAYCLVYEVKPLTDR 153 Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236 +V M A RQ+ ID ++ Y++ R + +++D +DN A+ G IT L Sbjct: 154 EKIDALVSMAAARQVTIDPEIFEYLLNHWRRDMDSLMQMLDTLDNYAVMMGKRITLPLLR 213 Query: 237 EVLKETQ 243 ++LK+ + Sbjct: 214 QLLKQQE 220 >gi|241759926|ref|ZP_04758026.1| DnaA regulatory inactivator Hda [Neisseria flavescens SK114] gi|241319934|gb|EER56330.1| DnaA regulatory inactivator Hda [Neisseria flavescens SK114] Length = 222 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 46/187 (24%), Positives = 85/187 (45%), Gaps = 9/187 (4%) Query: 64 SRVVILVGPSGSGKSCLANIWS----DKSRSTRFSNIAKS-LDSILIDTRKPVLLEDIDL 118 + + + G G+GKS L W D R+ + + A + L +D + + ++ I+ Sbjct: 36 GQFIYVWGEEGAGKSHLLRAWVAQALDAGRNALYIDAAATPLTEAALDA-EYLAIDQIEK 94 Query: 119 LDFNDTQ--LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 L+ N+ Q LF I N L+ + + V DL +R+ V ++ D Sbjct: 95 LN-NEEQALLFAIFNRFRNSGKGFLLLSSEYTPQQLVIREDLRTRMAYCLVYEVKPLTDR 153 Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236 +V M A RQ+ ID ++ Y++ R + +++D +DN A+ G IT L Sbjct: 154 EKIDALVSMAAARQVTIDPEIFEYLLNHWRRDMDSLMQMLDTLDNYAVMMGKRITLPLLR 213 Query: 237 EVLKETQ 243 ++LK+ + Sbjct: 214 QLLKQQE 220 >gi|254786961|ref|YP_003074390.1| DnaA regulatory inactivator Hda [Teredinibacter turnerae T7901] gi|237687481|gb|ACR14745.1| DnaA regulatory inactivator Hda [Teredinibacter turnerae T7901] Length = 236 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 53/218 (24%), Positives = 94/218 (43%), Gaps = 26/218 (11%) Query: 43 LLVHSAIEQAVRLIDSWPSWPSRVVILV-GPSGSGKSCL----ANIWSDKSRSTRFSNIA 97 L V S QAV ++ S S V G G+G S L + SD RS ++ +A Sbjct: 24 LAVGSGNRQAVDALEKVASGASLENTFVWGAHGTGLSHLLQAVCHQASDCGRSLQYFPMA 83 Query: 98 KSLDSILIDTRKPVLL----EDIDLLDFNDTQ-----------LFHIINSIHQYDSSLLM 142 + P L ED+DL+ + + LFH+ N + +L+ Sbjct: 84 D------VRGYAPAALCEGLEDLDLVCLDGIEHICGSREWEQSLFHLFNRMRDAGKTLVF 137 Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 ++ P + + LPDL SRL + + + DD + + + +R + +++A++I+ Sbjct: 138 SSHVSPAALPIVLPDLKSRLMSCIIYHLESLTDDAKKAALQQRAHERGFDMPEEVASFIL 197 Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 R R +L+DK+D+ +L +T VL+ Sbjct: 198 NRASRDTAELFELLDKLDDASLQAQRKLTIPFVKSVLE 235 >gi|255319431|ref|ZP_05360646.1| DnaA regulatory inactivator Hda [Acinetobacter radioresistens SK82] gi|255303499|gb|EET82701.1| DnaA regulatory inactivator Hda [Acinetobacter radioresistens SK82] Length = 239 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 67/147 (45%), Gaps = 22/147 (14%) Query: 69 LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL-LEDIDLLDFNDTQ-- 125 + G +GSGKS L + D S I SL +L + + LE DL+ +D + Sbjct: 48 IYGAAGSGKSHLLSAICDSYMEVGKSAIKVSLLELLDAPIEAITSLEKYDLVALDDIEAI 107 Query: 126 ---------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 +FH+IN ++ L+ ++R P+ + LPDL SRL A VK+ P+ Sbjct: 108 SGVPHWQRAVFHLINYNNEEGGQLIFSSRFAPMELKLELPDLQSRLTQAVSVKV--PNG- 164 Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQ 203 ++ADRQ + LA VQ Sbjct: 165 -------SLYADRQALVHSVLARRGVQ 184 >gi|325274455|ref|ZP_08140535.1| DNA replication initiation factor [Pseudomonas sp. TJI-51] gi|324100409|gb|EGB98175.1| DNA replication initiation factor [Pseudomonas sp. TJI-51] Length = 235 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 49/209 (23%), Positives = 95/209 (45%), Gaps = 18/209 (8%) Query: 47 SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL----ANIWSDKSRSTRFSNIAKSLDS 102 +A+ RL ++ W ++ L G G G+S L + + + + +A+ L+ Sbjct: 29 AALGYVERLCEADAGWTESLIYLWGKQGVGRSHLLQAATHRFQQRGEPAVYLPLAQLLER 88 Query: 103 IL-----IDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + + V ++D+ ++ + +FH+ N + LL+ A P V Sbjct: 89 GVGLLDYLAQYELVCIDDLHVIAGKPDWEEAMFHLFNRLRDSGRRLLLAASASPRELPVK 148 Query: 155 LPDLCSRLKAATVVKI-SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213 LPDL SRL A V ++ L D+D L + ++ + R + + ++ +I+ R RS+ Sbjct: 149 LPDLKSRLTLALVFQMRGLSDEDKLRALQLRA-SRRGLHLTDEVGHFILTRGARSMSALF 207 Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKET 242 L++++D +L R L LKET Sbjct: 208 DLLERLDQASLQ----AQRKLTIPFLKET 232 >gi|262379394|ref|ZP_06072550.1| DnaA regulatory inactivator Hda [Acinetobacter radioresistens SH164] gi|262298851|gb|EEY86764.1| DnaA regulatory inactivator Hda [Acinetobacter radioresistens SH164] Length = 235 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 67/147 (45%), Gaps = 22/147 (14%) Query: 69 LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL-LEDIDLLDFNDTQ-- 125 + G +GSGKS L + D S I SL +L + + LE DL+ +D + Sbjct: 44 IYGAAGSGKSHLLSAICDSYMEVGKSAIKVSLLELLDAPIEAITSLEKYDLVALDDIEAI 103 Query: 126 ---------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 +FH+IN ++ L+ ++R P+ + LPDL SRL A VK+ P+ Sbjct: 104 SGVPHWQRAVFHLINYNNEEGGQLIFSSRFAPMELKLELPDLQSRLTQAVSVKV--PNG- 160 Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQ 203 ++ADRQ + LA VQ Sbjct: 161 -------SLYADRQALVHSVLARRGVQ 180 >gi|21243683|ref|NP_643265.1| hypothetical protein XAC2956 [Xanthomonas axonopodis pv. citri str. 306] gi|21109263|gb|AAM37801.1| replication related protein [Xanthomonas axonopodis pv. citri str. 306] Length = 233 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 51/189 (26%), Positives = 86/189 (45%), Gaps = 16/189 (8%) Query: 67 VILVGPSGSGKSCLA-NIWSDKSRSTR------FSNIAKSLDSIL--IDTRKPVLLEDID 117 + L GP+G+GK+ LA ++ + ++ R A L L ++ R V L+ ++ Sbjct: 44 LYLSGPAGTGKTHLALSLCAAAEQAGRTPAYLPLQAAAGRLRDALEALEGRSLVALDGVE 103 Query: 118 LLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP- 173 + ++ LF N +LL TAR P + LPDL SRL A ++I LP Sbjct: 104 SIAGQRDDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRL--AQCIRIGLPV 161 Query: 174 -DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232 DD V+ R + +D+ +++ ER L L+D++D +L+ IT Sbjct: 162 LDDAARAAVLRDRAQRRGLALDEAAIDWLLTHSERELAALVALLDRLDRESLAAKRRITV 221 Query: 233 SLAAEVLKE 241 VL++ Sbjct: 222 PFLRRVLED 230 >gi|254513812|ref|ZP_05125873.1| DnaA regulatory inactivator Hda [gamma proteobacterium NOR5-3] gi|219676055|gb|EED32420.1| DnaA regulatory inactivator Hda [gamma proteobacterium NOR5-3] Length = 235 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 47/181 (25%), Positives = 82/181 (45%), Gaps = 11/181 (6%) Query: 69 LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------IDTRKPVLLEDIDLLDFN 122 L G +G GKS L + + +A L+S +++ + L+D+D++ Sbjct: 54 LHGAAGEGKSHLLQALCHATDGAVYLPLAVLLESPPSDLFQDLESSSLLALDDLDVIAGR 113 Query: 123 ---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179 + LFH+IN L M AR G+ L DL SRL +S DD + Sbjct: 114 REWEEALFHLINRARAAQCPLWMAARRPANDLGLQLADLSSRLAGGVTWALSAADDSD-K 172 Query: 180 KVIVKMFADRQ-IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238 + I++ A R+ + + + +A Y+ R R+L + +D++D +L +T L EV Sbjct: 173 QAILQFRARRKGLVLSESVAHYVCSRESRALADLMETLDRLDRASLQLQRPLTVPLIREV 232 Query: 239 L 239 + Sbjct: 233 M 233 >gi|119477092|ref|ZP_01617328.1| hypothetical protein GP2143_02179 [marine gamma proteobacterium HTCC2143] gi|119449455|gb|EAW30693.1| hypothetical protein GP2143_02179 [marine gamma proteobacterium HTCC2143] Length = 252 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 87/192 (45%), Gaps = 19/192 (9%) Query: 65 RVVILVGPSGSGKSCL---ANIWSDKSRSTR----FSNIAKSLDSILIDT---RKPVLLE 114 R V L G GSG+S L A +DK+ S S + + L D + V L+ Sbjct: 63 RYVYLFGREGSGRSHLLQAACHHADKNGSNAIYLPLSELGEYPPEELFDGLEYQSLVCLD 122 Query: 115 DIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 D+D + QLFH+ N + LL++AR + L DL SRL TV ++ Sbjct: 123 DVDAVIDKGLWQRQLFHLFNRLSDAQIPLLISARCAVRDLNIELQDLASRLSWGTVFQLH 182 Query: 172 LPDDDFLEKVIVKMFADRQ-IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 +DD +K+ A+R+ + + ++A YI R R ++D +D+ +L+ Sbjct: 183 NLNDD-QRTATIKLRAERRGLLMGDEVAQYIYNRCRRDTQALLSVLDTLDSASLT----Y 237 Query: 231 TRSLAAEVLKET 242 R L +K+T Sbjct: 238 QRRLTVPFVKKT 249 >gi|50085702|ref|YP_047212.1| putative chromosomal replication initiator, DnaA-type [Acinetobacter sp. ADP1] gi|49531678|emb|CAG69390.1| putative chromosomal replication initiator, DnaA-type [Acinetobacter sp. ADP1] Length = 235 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 43/137 (31%), Positives = 63/137 (45%), Gaps = 22/137 (16%) Query: 69 LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL-LEDIDLLDFNDTQ-- 125 + G +GSGKS L + D S I SL +L + + LE DL+ +D + Sbjct: 44 IYGGAGSGKSHLLSAICDSYLEIGKSAIKVSLLELLDAPIEAITSLERYDLVALDDIEAI 103 Query: 126 ---------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 +FH+IN ++ L+ ++R P+ + LPDL SRL A VK LP+ Sbjct: 104 SGVPHWQKAVFHLINYNNEVGGQLVFSSRVAPIELRLELPDLQSRLTQAVSVK--LPNG- 160 Query: 177 FLEKVIVKMFADRQIFI 193 +FADRQ I Sbjct: 161 -------SLFADRQALI 170 >gi|189462574|ref|ZP_03011359.1| hypothetical protein BACCOP_03264 [Bacteroides coprocola DSM 17136] gi|189430735|gb|EDU99719.1| hypothetical protein BACCOP_03264 [Bacteroides coprocola DSM 17136] Length = 469 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/214 (20%), Positives = 87/214 (40%), Gaps = 36/214 (16%) Query: 63 PSRV---VILVGPSGSGKSCLANI-------------------------WSDKSRSTRFS 94 P+R + L GPSG GK+ L N ++D R+ F+ Sbjct: 161 PARTFNPLFLYGPSGVGKTHLINAIGTRIKELYPEKRVLYVSAHLFQVQYTDSVRTNHFN 220 Query: 95 NI---AKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSW 151 + +++D ++ID +++ + FHI N +HQ L++T+ PV Sbjct: 221 DFISFYQTIDVLIIDD-----IQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVML 275 Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211 L +R K V ++ PD + + ++ + I + + YI + + S+ Sbjct: 276 QGMEDRLLTRFKWGLVAELEKPDIELRKNILRNKIRRDGLVIPESVICYIAENVNESVRE 335 Query: 212 AEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 E +V+ + ++ I LA ++++ +C Sbjct: 336 LEGIVNSLLVYSIQLKREINLDLAQRIVRKAVRC 369 >gi|152979518|ref|YP_001345147.1| chromosomal replication initiator DnaA [Actinobacillus succinogenes 130Z] gi|150841241|gb|ABR75212.1| Chromosomal replication initiator DnaA [Actinobacillus succinogenes 130Z] Length = 230 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/182 (24%), Positives = 91/182 (50%), Gaps = 13/182 (7%) Query: 71 GPSGSGKSCL----ANIWSDKSRSTRFSNIAKSL---DSIL--IDTRKPVLLEDIDLLDF 121 G G GKS L + + ++R+ + +AKS+ ++L ++ ++ V L+D+ + Sbjct: 47 GEEGCGKSHLLKAATHQFFGENRTALYVPLAKSVYFSPAVLDNLEQQELVCLDDLQCVIG 106 Query: 122 ND---TQLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 N+ +F + N I ++ +LL+ +A P S V LPDL SRL + ++ DD Sbjct: 107 NEEWEVAVFDLFNRIKEHGKTLLIVSANQSPNSLPVQLPDLASRLSWGEIYQLHALDDQQ 166 Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237 + + R I + + A+++++R++R++ ++D++D +L +T E Sbjct: 167 KITALQQNARQRGIELPDETASFLIKRLDRNMHNLFAVLDQLDKASLQAQRKLTIPFVKE 226 Query: 238 VL 239 L Sbjct: 227 TL 228 >gi|298368961|ref|ZP_06980279.1| DnaA regulatory inactivator Hda [Neisseria sp. oral taxon 014 str. F0314] gi|298282964|gb|EFI24451.1| DnaA regulatory inactivator Hda [Neisseria sp. oral taxon 014 str. F0314] Length = 225 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/192 (22%), Positives = 80/192 (41%), Gaps = 19/192 (9%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF-- 121 + + + G G+GKS L W ++ + +++ ID L E + D+ Sbjct: 39 GQFIYVWGEQGAGKSHLLQAWVAQA-------LGMGKNAVYIDAATSPLTESVLEADYLA 91 Query: 122 --------NDTQ--LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 N+ Q LF + N L+ + V DL +R+ V ++ Sbjct: 92 IDQIEKLGNEEQALLFAVFNRFRNSGKGFLLLSSEHTPQQLVIREDLRTRMAYCLVYEVK 151 Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231 D +V M A RQ+ ID ++ Y++ R + +++D +DN A++ G IT Sbjct: 152 PLTDQEKIDALVSMAAARQVTIDLEIFEYLLNHWRRDMDSLMQMLDTLDNYAVTMGKRIT 211 Query: 232 RSLAAEVLKETQ 243 L ++LK+ + Sbjct: 212 LPLLRQLLKQQE 223 >gi|77457863|ref|YP_347368.1| DNA replication initiation factor [Pseudomonas fluorescens Pf0-1] gi|77381866|gb|ABA73379.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1] Length = 234 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 52/214 (24%), Positives = 95/214 (44%), Gaps = 28/214 (13%) Query: 47 SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI--- 103 +A+ RL ++ W ++ L G G G++ L ++ RF + + + Sbjct: 28 AALGYVERLCEADAGWTESLIYLWGKHGVGRTHLL-----QAACLRFEQMGEPAVYLPLA 82 Query: 104 -LIDTRKPVL--LEDIDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPV 149 L+D +L LE +L+ +D Q +FH+ N + LL+ A T P Sbjct: 83 ELMDRGIEILDNLEQYELVCLDDLQVIAGKADWEEAMFHLFNRLRDSGRRLLIAASTSPR 142 Query: 150 SWGVCLPDLCSRLKAATVVKIS-LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 + L DL SRL A + ++ L D+D L + ++ + R + + ++ +I+ R RS Sbjct: 143 ELPIKLADLKSRLTLALIFQMRPLSDEDKLRALQLRA-SRRGLHLTDEVGHFILTRGTRS 201 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + L++++D +L R L LKET Sbjct: 202 MSALFDLLEQLDQASLQ----AQRKLTIPFLKET 231 >gi|114562926|ref|YP_750439.1| DNA replication initiation factor [Shewanella frigidimarina NCIMB 400] gi|114334219|gb|ABI71601.1| regulatory inactivation of DnaA Hda protein [Shewanella frigidimarina NCIMB 400] Length = 236 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/189 (23%), Positives = 92/189 (48%), Gaps = 17/189 (8%) Query: 67 VILVGPSGSGKSCLAN----IWSDKSRSTRFS--NIAKSLDSIL---IDTRKPVLLEDID 117 + + GP SG++ L + + +D R T + I S+ L +++ + + ++DI+ Sbjct: 49 LYVYGPEKSGRTHLMHAACALANDLERRTLYIPLGIHASISPALFEGLESLELICIDDIE 108 Query: 118 LLDFN---DTQLFHIINSI-HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 + + + +FH+ N I Q D L++ + P G LPDL SR++ + ++ Sbjct: 109 AIAGHPVWEEAIFHLYNRIAEQQDCRLIVNGKASPSETGFLLPDLVSRMQWGLIYQLQPM 168 Query: 174 DDDFLEKVIV--KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231 DD EK++ + A R + + ++ +++ RM R L ++DK+D ++ +T Sbjct: 169 ADD--EKLVALQRRAAMRGLQLSDEVGRFLLTRMARDLRTLFDVLDKLDKASMVHQRKLT 226 Query: 232 RSLAAEVLK 240 E+L+ Sbjct: 227 IPFIKEMLR 235 >gi|91781892|ref|YP_557098.1| hypothetical protein Bxe_A3953 [Burkholderia xenovorans LB400] gi|91685846|gb|ABE29046.1| Conserved hypothetical protein [Burkholderia xenovorans LB400] Length = 256 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 79/176 (44%), Gaps = 8/176 (4%) Query: 65 RVVILVGPSGSGKSCL--ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL-LEDIDLLDF 121 R + G SGSG++ L A + RF+ SL + D R + ++D D L Sbjct: 47 RTFYIWGESGSGRTHLLQALVHEAPPGHARFAGPQSSLAAFGFDPRVALYAIDDCDALSA 106 Query: 122 -NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLE 179 +F++ N + + +S L+ A P DL +RL V ++ LPD+D + Sbjct: 107 AQQIAVFNLFNEVRAHPTSALVAAGNAPPIGMTVREDLRTRLGWGLVFHLAPLPDED--K 164 Query: 180 KVIVKMFA-DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234 ++K A +R I + + AY++ R + L+D +D +L + +T L Sbjct: 165 AAVLKHAARERGIMLADDVPAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPL 220 >gi|189425233|ref|YP_001952410.1| Chromosomal replication initiator DnaA [Geobacter lovleyi SZ] gi|189421492|gb|ACD95890.1| Chromosomal replication initiator DnaA [Geobacter lovleyi SZ] Length = 229 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 54/216 (25%), Positives = 95/216 (43%), Gaps = 14/216 (6%) Query: 29 FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS 88 F +F C G S +A+E + R+ D P+ P +++ L GP+GSGK+ L + + Sbjct: 16 FENFISCAGNS-------TALEFSRRITD--PAEPEKLLYLYGPAGSGKTHLLHAIGRQL 66 Query: 89 RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND-----TQLFHIINSIHQYDSSLLMT 143 ++ ++ ++ + T LL DL D L+ N + +L + Sbjct: 67 AGEQYQVLSCRNLTVPVATNPGSLLLVDDLDQLPDRPELRNALWEAFNQQYSSGHTLALA 126 Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203 R P L SRL V ++ + DD + +I K+ DRQI + ++A +++ Sbjct: 127 GRFAPKELPTIDDHLISRLLWGLVARLDVSDDRSRQMLIAKLAQDRQIILPDEVAGWLLT 186 Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + R + D + AL R IT LA E++ Sbjct: 187 VLPRDVGSLVSACDALYRAALQRKCRITLRLARELV 222 >gi|78221967|ref|YP_383714.1| regulatory inactivation of DnaA Hda protein [Geobacter metallireducens GS-15] gi|78193222|gb|ABB30989.1| regulatory inactivation of DnaA Hda protein [Geobacter metallireducens GS-15] Length = 243 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 60/239 (25%), Positives = 95/239 (39%), Gaps = 27/239 (11%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWP--SWPSRVVILVGPSGSGKS-CLANI 83 QL F FP S D+ ++ S E A R + ++ L GPSGSGK+ L I Sbjct: 2 QLVFDFPVNPKYSLDNFVICSGNETAYRFVRRLTDDEGAENLLYLHGPSGSGKTHLLMAI 61 Query: 84 WSDKSRSTRFSNIA----KSLDSILIDT--------------RKPVLLEDIDLLDFNDTQ 125 + S S++ K +D + P LL D DL D Q Sbjct: 62 GAHFSARAGLSSVPCISFKDVDEVYGGEYPAEAVSKLAERFRNAPALLVD-DLHLIPDQQ 120 Query: 126 -----LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 L+ + N +Q + +T P L SRL V ++ + DDD Sbjct: 121 AVRVELWQLFNDFYQAGRPIAITGLYPPKELPTIDDHLISRLLWGLVARVDISDDDSRRL 180 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 ++ K+ DRQI + + Y++ + R + + +D + AL+ ++ LA E L Sbjct: 181 IMKKLADDRQIVLPADVIDYLLLHVRRDVPSLIEALDAISRYALAAKRKVSVRLAREAL 239 >gi|126642638|ref|YP_001085622.1| putative chromosomal replication initiator DnaA-type [Acinetobacter baumannii ATCC 17978] Length = 205 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/149 (27%), Positives = 72/149 (48%), Gaps = 20/149 (13%) Query: 69 LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL-LEDIDLLDFNDTQ-- 125 + G +G+GKS L + D S I SL +L + + LE DL+ +D + Sbjct: 17 IYGGAGTGKSHLLSAICDSYLEVGKSAIKVSLLELLDAPIEAITCLEHYDLVALDDIESI 76 Query: 126 ---------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI---SLP 173 +FH++N+ ++ L+ ++R P+ + LPDL SRL A VK+ SL Sbjct: 77 SGVPHWQKAVFHLMNN---HEGQLVFSSRVAPIELKLELPDLQSRLTQAVSVKVPSGSLY 133 Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 D + ++ + A R I D+++ Y++ Sbjct: 134 ADRY--ALVTSVMARRGIHFDQQIVDYLL 160 >gi|294626251|ref|ZP_06704854.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292599397|gb|EFF43531.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 233 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 50/189 (26%), Positives = 86/189 (45%), Gaps = 16/189 (8%) Query: 67 VILVGPSGSGKSCLA-NIWSDKSRSTR------FSNIAKSLDSIL--IDTRKPVLLEDID 117 + L GP+G+GK+ LA ++ + ++ R A L L ++ R V L+ ++ Sbjct: 44 LYLSGPAGTGKTHLALSLCAAAEQAGRTPAYLPLQAAAGRLRDALEALEGRSLVALDGVE 103 Query: 118 LLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP- 173 + ++ LF N +LL TAR P + LPDL SRL + ++I LP Sbjct: 104 SIAGQRDDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRL--SQCIRIGLPV 161 Query: 174 -DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232 DD V+ R + +D+ +++ ER L L+D++D +L+ IT Sbjct: 162 LDDAARAAVLRDRAQRRGLALDEAAIDWLLTHRERELAALVDLLDRLDRESLAAKRRITV 221 Query: 233 SLAAEVLKE 241 VL++ Sbjct: 222 PFLRRVLED 230 >gi|294664601|ref|ZP_06729941.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605629|gb|EFF48940.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 233 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 50/189 (26%), Positives = 86/189 (45%), Gaps = 16/189 (8%) Query: 67 VILVGPSGSGKSCLA-NIWSDKSRSTR------FSNIAKSLDSIL--IDTRKPVLLEDID 117 + L GP+G+GK+ LA ++ + ++ R A L L ++ R V L+ ++ Sbjct: 44 LYLSGPAGTGKTHLALSLCAAAEQAGRTPAYLPLQAAAGRLRDALEALEGRSLVALDGVE 103 Query: 118 LLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP- 173 + ++ LF N +LL TAR P + LPDL SRL + ++I LP Sbjct: 104 SIAGQRDDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRL--SQCIRIGLPV 161 Query: 174 -DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232 DD V+ R + +D+ +++ ER L L+D++D +L+ IT Sbjct: 162 LDDAARAAVLRDRAQRRGLALDEAAIDWLLTHSERELAALVALLDRLDRESLAAKRRITV 221 Query: 233 SLAAEVLKE 241 VL++ Sbjct: 222 PFLRRVLED 230 >gi|296161794|ref|ZP_06844596.1| DnaA regulatory inactivator Hda [Burkholderia sp. Ch1-1] gi|295887958|gb|EFG67774.1| DnaA regulatory inactivator Hda [Burkholderia sp. Ch1-1] Length = 256 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 79/176 (44%), Gaps = 8/176 (4%) Query: 65 RVVILVGPSGSGKSCL--ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL-LEDIDLLDF 121 R + G SGSG++ L A + RF+ SL + D R + ++D D L Sbjct: 47 RTFYIWGESGSGRTHLLQALVHEAPPGHARFAGPQSSLAAFSFDPRVALYAIDDCDALSA 106 Query: 122 -NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLE 179 +F++ N + + +S L+ A P DL +RL V ++ LPD+D + Sbjct: 107 AQQIAVFNLFNEVRAHPTSALVAAGNAPPIGMTVREDLRTRLGWGLVFHLTPLPDED--K 164 Query: 180 KVIVKMFA-DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234 ++K A +R I + + AY++ R + L+D +D +L + +T L Sbjct: 165 AAVLKHAARERGIMLADDVPAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPL 220 >gi|169795049|ref|YP_001712842.1| putative chromosomal replication initiator, DnaA-type [Acinetobacter baumannii AYE] gi|184159167|ref|YP_001847506.1| DNA replication initiation ATPase [Acinetobacter baumannii ACICU] gi|213158289|ref|YP_002320340.1| DnaA family protein [Acinetobacter baumannii AB0057] gi|215482598|ref|YP_002324790.1| DnaA regulatory inactivator Hda [Acinetobacter baumannii AB307-0294] gi|260556532|ref|ZP_05828750.1| DnaA regulatory inactivator Hda [Acinetobacter baumannii ATCC 19606] gi|301347427|ref|ZP_07228168.1| DnaA regulatory inactivator Hda [Acinetobacter baumannii AB056] gi|301513662|ref|ZP_07238899.1| DnaA regulatory inactivator Hda [Acinetobacter baumannii AB058] gi|301596500|ref|ZP_07241508.1| DnaA regulatory inactivator Hda [Acinetobacter baumannii AB059] gi|332851104|ref|ZP_08433213.1| DnaA regulatory inactivator Hda [Acinetobacter baumannii 6013150] gi|332869623|ref|ZP_08438834.1| DnaA regulatory inactivator Hda [Acinetobacter baumannii 6013113] gi|332875994|ref|ZP_08443780.1| DnaA regulatory inactivator Hda [Acinetobacter baumannii 6014059] gi|169147976|emb|CAM85839.1| putative chromosomal replication initiator, DnaA-type [Acinetobacter baumannii AYE] gi|183210761|gb|ACC58159.1| ATPase involved in DNA replication initiation [Acinetobacter baumannii ACICU] gi|193078085|gb|ABO13020.2| putative chromosomal replication initiator DnaA-type [Acinetobacter baumannii ATCC 17978] gi|213057449|gb|ACJ42351.1| DnaA family protein [Acinetobacter baumannii AB0057] gi|213987719|gb|ACJ58018.1| DnaA regulatory inactivator Hda [Acinetobacter baumannii AB307-0294] gi|260409791|gb|EEX03091.1| DnaA regulatory inactivator Hda [Acinetobacter baumannii ATCC 19606] gi|322509081|gb|ADX04535.1| Putative chromosomal replication initiator, DnaA-type [Acinetobacter baumannii 1656-2] gi|323519111|gb|ADX93492.1| DNA replication initiation ATPase [Acinetobacter baumannii TCDC-AB0715] gi|332730268|gb|EGJ61593.1| DnaA regulatory inactivator Hda [Acinetobacter baumannii 6013150] gi|332732670|gb|EGJ63902.1| DnaA regulatory inactivator Hda [Acinetobacter baumannii 6013113] gi|332735860|gb|EGJ66901.1| DnaA regulatory inactivator Hda [Acinetobacter baumannii 6014059] Length = 232 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/149 (27%), Positives = 72/149 (48%), Gaps = 20/149 (13%) Query: 69 LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL-LEDIDLLDFNDTQ-- 125 + G +G+GKS L + D S I SL +L + + LE DL+ +D + Sbjct: 44 IYGGAGTGKSHLLSAICDSYLEVGKSAIKVSLLELLDAPIEAITCLEHYDLVALDDIESI 103 Query: 126 ---------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI---SLP 173 +FH++N+ ++ L+ ++R P+ + LPDL SRL A VK+ SL Sbjct: 104 SGVPHWQKAVFHLMNN---HEGQLVFSSRVAPIELKLELPDLQSRLTQAVSVKVPSGSLY 160 Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 D + ++ + A R I D+++ Y++ Sbjct: 161 ADRY--ALVTSVMARRGIHFDQQIVDYLL 187 >gi|169632704|ref|YP_001706440.1| putative chromosomal replication initiator, DnaA-type [Acinetobacter baumannii SDF] gi|239501016|ref|ZP_04660326.1| putative chromosomal replication initiator, DnaA-type [Acinetobacter baumannii AB900] gi|260549334|ref|ZP_05823554.1| DnaA regulatory inactivator Hda [Acinetobacter sp. RUH2624] gi|169151496|emb|CAP00259.1| putative chromosomal replication initiator, DnaA-type [Acinetobacter baumannii] gi|260407740|gb|EEX01213.1| DnaA regulatory inactivator Hda [Acinetobacter sp. RUH2624] Length = 232 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/149 (27%), Positives = 72/149 (48%), Gaps = 20/149 (13%) Query: 69 LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL-LEDIDLLDFNDTQ-- 125 + G +G+GKS L + D S I SL +L + + LE DL+ +D + Sbjct: 44 IYGGAGTGKSHLLSAICDSYLEVGKSAIKVSLLELLDAPIEAITCLEHYDLVALDDIESI 103 Query: 126 ---------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI---SLP 173 +FH++N+ ++ L+ ++R P+ + LPDL SRL A VK+ SL Sbjct: 104 SGVPHWQKAVFHLMNN---HEGQLVFSSRVAPIELKLELPDLQSRLTQAVSVKVPSGSLY 160 Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 D + ++ + A R I D+++ Y++ Sbjct: 161 ADRY--ALVTSVMARRGIHFDQQIVDYLL 187 >gi|312962335|ref|ZP_07776826.1| DnaA family protein [Pseudomonas fluorescens WH6] gi|311283262|gb|EFQ61852.1| DnaA family protein [Pseudomonas fluorescens WH6] Length = 234 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 52/214 (24%), Positives = 94/214 (43%), Gaps = 28/214 (13%) Query: 47 SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI--- 103 +A+ RL ++ W ++ L G G G++ L ++ RF + + + Sbjct: 28 AALGYVERLCEADAGWTESLIYLWGKQGVGRTHLL-----QAACLRFEQMGEPAVYLPLA 82 Query: 104 -LIDTRKPVL--LEDIDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPV 149 L+D + LE +L+ +D Q LFH+ N + LL+ A T P Sbjct: 83 ELMDRGIGIFDHLEQYELVCLDDLQAIAGKADWEEALFHLFNRLRDSGRRLLIAAATSPR 142 Query: 150 SWGVCLPDLCSRLKAATVVKIS-LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 + L DL SRL A + ++ L D+D L + ++ + R + + ++ +I+ R RS Sbjct: 143 ELPIKLADLKSRLTLALIFQMRPLSDEDKLRALQLRA-SRRGLHLTDEVGHFILTRGTRS 201 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + L++++D +L R L LKET Sbjct: 202 MSALFDLLEQLDQASLQ----AQRKLTIPFLKET 231 >gi|78048657|ref|YP_364832.1| hypothetical protein XCV3101 [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037087|emb|CAJ24832.1| replication related protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 235 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/173 (26%), Positives = 80/173 (46%), Gaps = 16/173 (9%) Query: 67 VILVGPSGSGKSCLA-NIWSDKSRSTR------FSNIAKSLDSIL--IDTRKPVLLEDID 117 + L GP+G+GK+ LA ++ + ++ R A L L ++ R V L+ ++ Sbjct: 44 LYLSGPAGTGKTHLALSLCAAAEQAGRTPAYLPLQAAAGRLRDALEALEGRGLVALDGVE 103 Query: 118 LLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP- 173 + ++ LF N +LL TAR P + LPDL SRL + ++I LP Sbjct: 104 SIAGRRDDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRL--SQCIRIGLPV 161 Query: 174 -DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 DD V+ R + +D+ +++ ER L L+D++D +L+ Sbjct: 162 LDDAARGAVLRDRAQRRGLALDEAAIDWLLTHSERELAGLVALLDRLDRESLA 214 >gi|325926061|ref|ZP_08187424.1| regulatory inactivation of DnaA Hda protein [Xanthomonas perforans 91-118] gi|325543519|gb|EGD14939.1| regulatory inactivation of DnaA Hda protein [Xanthomonas perforans 91-118] Length = 235 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/173 (26%), Positives = 80/173 (46%), Gaps = 16/173 (9%) Query: 67 VILVGPSGSGKSCLA-NIWSDKSRSTR------FSNIAKSLDSIL--IDTRKPVLLEDID 117 + L GP+G+GK+ LA ++ + ++ R A L L ++ R V L+ ++ Sbjct: 44 LYLSGPAGTGKTHLALSLCAAAEQAGRTPAYLPLQAAAGRLRDALEALEGRGLVALDGVE 103 Query: 118 LLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP- 173 + ++ LF N +LL TAR P + LPDL SRL + ++I LP Sbjct: 104 SIAGRRDDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRL--SQCIRIGLPV 161 Query: 174 -DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 DD V+ R + +D+ +++ ER L L+D++D +L+ Sbjct: 162 LDDAARGAVLRDRAQRRGLALDEAAIDWLLTHSERELAGLVALLDRLDRESLA 214 >gi|293609874|ref|ZP_06692176.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828326|gb|EFF86689.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|325123102|gb|ADY82625.1| chromosomal replication initiator protein DnaA [Acinetobacter calcoaceticus PHEA-2] Length = 232 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/149 (27%), Positives = 72/149 (48%), Gaps = 20/149 (13%) Query: 69 LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL-LEDIDLLDFNDTQ-- 125 + G +G+GKS L + D S I SL +L + + LE DL+ +D + Sbjct: 44 IYGGAGTGKSHLLSAICDSYLEIGKSAIKVSLLELLDAPIEAITSLEHYDLVALDDIESI 103 Query: 126 ---------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI---SLP 173 +FH++N+ ++ L+ ++R P+ + LPDL SRL A VK+ SL Sbjct: 104 SGVPHWQKAVFHLMNN---HEGQLVFSSRVAPIELKLELPDLQSRLTQAVSVKVPSGSLY 160 Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 D + ++ + A R I D+++ Y++ Sbjct: 161 ADRY--ALVTSVMARRGIHFDQQIVDYLL 187 >gi|311694193|gb|ADP97066.1| DNA replication initiation factor [marine bacterium HP15] Length = 232 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/171 (25%), Positives = 82/171 (47%), Gaps = 12/171 (7%) Query: 66 VVILVGPSGSGKSCL----ANIWSDKSRSTRFSNIAK----SLDSI-LIDTRKPVLLEDI 116 VV+L G + +GKS L ++ + R+ +IA+ D++ ++T + V L+D+ Sbjct: 45 VVVLCGDADTGKSHLLQAVCHLGEKQGRAAVCISIAELEPFGPDALSGLETHEIVCLDDV 104 Query: 117 DLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 D + + +FH+ N I LL++ P S LPDL SR V+++ + Sbjct: 105 DRIAGQRVWEEAIFHLYNRILDRGGLLLVSLADLPASLPFELPDLISRFSHGLVIQLGIY 164 Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 D+ ++ R + + +A+YI++R R L ++D +D +L Sbjct: 165 RDEDRLTILRARAEKRGLVMADDVASYIMRRAPRRLGDLLGILDILDENSL 215 >gi|71281837|ref|YP_269890.1| hypothetical protein CPS_3194 [Colwellia psychrerythraea 34H] gi|71147577|gb|AAZ28050.1| conserved hypothetical protein [Colwellia psychrerythraea 34H] Length = 235 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 56/215 (26%), Positives = 91/215 (42%), Gaps = 31/215 (14%) Query: 46 HSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI 105 + Q I+S S P L G S GKS L + + ST + I KS S+ + Sbjct: 28 QGVVTQLKSYIESQQSTPHSFY-LFGLSSVGKSHLMH-----ASSTYAAQIGKS--SVCL 79 Query: 106 DTRK----PVL----LEDIDLLDFNDTQL-----------FHIINSIHQYDSSLLMTART 146 + PV LE IDL+ +D L F + N + + ++ LL++ Sbjct: 80 SCAELKQLPVEVLDGLEQIDLICLDDIHLIAGDTRWQQAIFDLFNRVLEQNNYLLISGDE 139 Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF--ADRQIFIDKKLAAYIVQR 204 G+ LPDL SRL ++ DD+ EKVI + R +F+ ++ +++ R Sbjct: 140 SAQQLGISLPDLVSRLTWGLTEQVKPVDDE--EKVIALQYRATQRGLFLSDEVVKFLLNR 197 Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + R + +D +D ++ IT EVL Sbjct: 198 LSRDMGSLINSLDVLDKASIQEQRKITIPFIKEVL 232 >gi|224027038|ref|ZP_03645404.1| hypothetical protein BACCOPRO_03797 [Bacteroides coprophilus DSM 18228] gi|224020274|gb|EEF78272.1| hypothetical protein BACCOPRO_03797 [Bacteroides coprophilus DSM 18228] Length = 469 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 43/214 (20%), Positives = 87/214 (40%), Gaps = 36/214 (16%) Query: 63 PSRV---VILVGPSGSGKSCLANI-------------------------WSDKSRSTRFS 94 P+R + L GPSG GK+ L N ++D R+ F+ Sbjct: 162 PARTFNPLFLYGPSGVGKTHLINAIGTRIKELYPEKRVLYVSAHLFQVQYTDSVRTNHFN 221 Query: 95 NI---AKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSW 151 + +++D ++ID +++ + FHI N +HQ L++T+ PV Sbjct: 222 DFISFYQTIDVLIIDD-----IQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVML 276 Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211 L +R K V ++ PD + + ++ + I + + YI + + S+ Sbjct: 277 QGMEDRLLTRFKWGLVAELEKPDIELRKNILRNKIRRDGLTIPESVICYIAENVNESVRE 336 Query: 212 AEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 E +V+ + ++ I LA ++++ +C Sbjct: 337 LEGIVNSLLAQSILLKREINLDLAQRIVRKAVRC 370 >gi|82523748|emb|CAI78748.1| chromosomal replication initiator protein dnaA [uncultured gamma proteobacterium] Length = 243 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 49/191 (25%), Positives = 84/191 (43%), Gaps = 24/191 (12%) Query: 66 VVILVGPSGSGKSCLANIWSDKSRS-TRFSNIAK--------------SLDSILIDTRKP 110 ++ + GP G+GKS L R+ T + +A+ LD + ID + Sbjct: 58 IIYVYGPPGAGKSHLLQASCHAGRAETLYLPLAELRQFPGQEVMQGVERLDRVCIDDVQA 117 Query: 111 VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 VL D D + LF+ N Q +++ P + V L DL SRL V ++ Sbjct: 118 VL-GDADW----ELALFNFCNGARQRGCRMVVAGDAAPRALAVNLADLRSRLSWGIVYQL 172 Query: 171 SLPDDDFLEKVIVKMF--ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228 + D+ EKV + F R + + K +A +IV R R+ ++D++D +L+R Sbjct: 173 AEGSDE--EKVDILRFRATRRGLSLSKSVATFIVSRAPRATEQLLMVLDQLDKHSLARQR 230 Query: 229 GITRSLAAEVL 239 ++ EV+ Sbjct: 231 ALSIPFVKEVM 241 >gi|261365987|ref|ZP_05978870.1| DnaA regulatory inactivator Hda [Neisseria mucosa ATCC 25996] gi|288565417|gb|EFC86977.1| DnaA regulatory inactivator Hda [Neisseria mucosa ATCC 25996] Length = 222 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 47/189 (24%), Positives = 80/189 (42%), Gaps = 27/189 (14%) Query: 71 GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS----ILIDTRKPVLLED--------IDL 118 G G+GKS L W +A++LD+ + ID L E ID Sbjct: 43 GEEGAGKSHLLRAW-----------VAQALDAGKKAVYIDASATPLTEAAFEAEYLAIDQ 91 Query: 119 LD--FNDTQ--LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 ++ N+ Q LF + N L+ + V DL +R+ V ++ Sbjct: 92 IEKLGNEEQALLFAVFNRFRNSGKGFLLLSSEHTPQQLVIREDLRTRMAYCLVYEVKPLT 151 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234 D +V M A RQ+ ID ++ Y++ R + +++D +DN A++ G IT L Sbjct: 152 DQEKIDALVSMAAARQVTIDPEIFEYLLNHWRRDMDSLMQMLDTLDNYAVTMGKRITLPL 211 Query: 235 AAEVLKETQ 243 ++LK+ + Sbjct: 212 LRQLLKQQE 220 >gi|325297173|ref|YP_004257090.1| Chromosomal replication initiator protein dnaA [Bacteroides salanitronis DSM 18170] gi|324316726|gb|ADY34617.1| Chromosomal replication initiator protein dnaA [Bacteroides salanitronis DSM 18170] Length = 469 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 43/214 (20%), Positives = 85/214 (39%), Gaps = 36/214 (16%) Query: 63 PSRV---VILVGPSGSGKSCLANI-------------------------WSDKSRSTRFS 94 P+R + L GPSG GK+ L N ++D R+ F+ Sbjct: 161 PARTFNPLFLYGPSGVGKTHLINAIGTRIKELYPEKRVLYISAHLFQVQYTDSIRTNHFN 220 Query: 95 NI---AKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSW 151 + + +D ++ID +++ + FHI N +HQ L++T+ PV Sbjct: 221 DFITFYQQIDVLIIDD-----IQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVML 275 Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211 L +R K + ++ PD D + ++ + I + YI + + S+ Sbjct: 276 QGIEDRLLTRFKWGLIAELERPDIDLRKNILRSKIRRDGLNIPDAVINYIAENVNESVRE 335 Query: 212 AEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 E +V+ + ++ I LA ++++ +C Sbjct: 336 LEGIVNSLLVYSIQLKREINLDLAQHIVQKAVRC 369 >gi|187922752|ref|YP_001894394.1| DnaA regulatory inactivator Hda [Burkholderia phytofirmans PsJN] gi|187713946|gb|ACD15170.1| DnaA regulatory inactivator Hda [Burkholderia phytofirmans PsJN] Length = 256 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 78/176 (44%), Gaps = 8/176 (4%) Query: 65 RVVILVGPSGSGKSCL--ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL-LEDIDLLDF 121 R L G SGSG++ L A + RF+ SL + D R + ++D D L Sbjct: 47 RTFYLWGESGSGRTHLLQALVHEASPGHARFAGPQSSLAAFSFDPRVALYAIDDCDALSA 106 Query: 122 -NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLE 179 +F++ N + + +S L+ A P DL +RL V ++ LPD+ + Sbjct: 107 AQQIAVFNLFNEVRAHPTSALVAAGNAPPIGMTVREDLRTRLGWGLVFHLAPLPDEG--K 164 Query: 180 KVIVKMFA-DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234 ++K A +R I + + AY++ R + L+D +D +L + +T L Sbjct: 165 AAVLKHAARERGIMLADDVPAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPL 220 >gi|171057364|ref|YP_001789713.1| DnaA regulatory inactivator Hda [Leptothrix cholodnii SP-6] gi|170774809|gb|ACB32948.1| DnaA regulatory inactivator Hda [Leptothrix cholodnii SP-6] Length = 225 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 49/191 (25%), Positives = 84/191 (43%), Gaps = 16/191 (8%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI------DTRKPVLLEDI 116 P+ + L GP GSGK+ L + ++ S + +LD + D +LL+D Sbjct: 39 PATPLYLWGPPGSGKTHLLRAAAALAQER--SQLVVALDCSGVPPWEFDDHTGLLLLDDC 96 Query: 117 DLLDFNDTQ-LFHIINSIHQYDSSLLMTARTFPVSWGVCLP---DLCSRLKAATVVKISL 172 D D Q F + +L R PV LP DL +RL V ++ Sbjct: 97 DRYDTRRQQAAFALFVQATTLGVPVLAAGRLPPVD----LPIRDDLRTRLGWGLVYQLVP 152 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232 P +D + ++ + R I + + Y+++R R L +L+D++D AL+ +T Sbjct: 153 PGEDHVRALMRREADRRGIVLSDDVIDYLLKRCARDLSHLMRLLDRLDQQALATKRAVTL 212 Query: 233 SLAAEVLKETQ 243 L +VL E++ Sbjct: 213 PLVRKVLAESE 223 >gi|73661310|ref|YP_300091.1| chromosomal replication initiation protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123747926|sp|Q4A180|DNAA_STAS1 RecName: Full=Chromosomal replication initiator protein DnaA gi|72493825|dbj|BAE17146.1| chromosomal replication initiator protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 455 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 34/158 (21%), Positives = 72/158 (45%), Gaps = 5/158 (3%) Query: 88 SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTF 147 +++ RF +++D +LID ++ I + + FH N +HQ + +++++ Sbjct: 203 NKTERFREKYRNIDVLLIDD-----IQFIQNKEQTQEEFFHTFNELHQANKQIVISSDRP 257 Query: 148 PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER 207 P L SR + +V I+ PD + ++ K + + I + YI +++ Sbjct: 258 PKEIAKLEDRLRSRFEWGLIVDITPPDYETRMAILQKKIGEENLNIPTEALTYIANQIQS 317 Query: 208 SLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 ++ E + ++ + +G IT L AE LK+ Q Sbjct: 318 NIRELEGALTRVLAFSKLQGQPITTELTAEALKDIIQA 355 >gi|299769105|ref|YP_003731131.1| DnaA regulatory inactivator Hda [Acinetobacter sp. DR1] gi|298699193|gb|ADI89758.1| DnaA regulatory inactivator Hda [Acinetobacter sp. DR1] Length = 232 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 33/173 (19%) Query: 58 SWPSWPSRV-------------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL 104 S PSW + V + G +G+GKS L + D S I SL +L Sbjct: 20 SGPSWGNVVDAVRQLHAGLVSRFYIYGGAGTGKSHLLSAICDSYLEVGKSAIKVSLLELL 79 Query: 105 IDTRKPVL-LEDIDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPVSWG 152 + + LE DL+ +D + +FH++N+ ++ L+ ++R P+ Sbjct: 80 DAPIEAITSLEHYDLVALDDIESISGVPHWQKAVFHLMNN---HEGQLVFSSRVAPIELK 136 Query: 153 VCLPDLCSRLKAATVVKI---SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 + LPDL SRL A VK+ SL D + ++ + + R I D+++ Y++ Sbjct: 137 LELPDLQSRLTQAVSVKVPSGSLYADRY--SLVTSVMSRRGIHFDQQIVDYLL 187 >gi|221134619|ref|ZP_03560922.1| Chromosomal replication initiator, DnaA like protein to DnaA protein Hda [Glaciecola sp. HTCC2999] Length = 246 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 55/115 (47%) Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 LF +IN + ++++T+ P CLPDL SRL V I DD L + + Sbjct: 131 LFDLINRCIESACAMVLTSALGPAHHDFCLPDLRSRLTWGQVYHIHPLTDDGLLQAVTSY 190 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + + +Y+++ R ++++D++D ++LS IT L +VL Sbjct: 191 VQTKGLNMQMNAISYLLKFSTRDFSSIQRVIDELDKVSLSHQQAITIPLIKKVLH 245 >gi|54295630|ref|YP_128045.1| hypothetical protein lpl2717 [Legionella pneumophila str. Lens] gi|53755462|emb|CAH16958.1| hypothetical protein lpl2717 [Legionella pneumophila str. Lens] gi|307611672|emb|CBX01364.1| hypothetical protein LPW_30571 [Legionella pneumophila 130b] Length = 230 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 49/194 (25%), Positives = 99/194 (51%), Gaps = 24/194 (12%) Query: 65 RVVILVGPSGSGKS-----CLANIWSDKSRSTRFSNIA-------KSLDSILIDTRKPVL 112 R++ L GP GSGKS C I + ++S + +A +S++ + + + + Sbjct: 42 RLLYLWGPKGSGKSHLLQACCQAI--NLTQSAIYLPLAFLKEWGPQSIEGL--EDQTLIC 97 Query: 113 LEDIDLLDFNDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVV 168 ++DI+ + + T LFH+ N I + SLL+ + P+ + L DL SRL V+ Sbjct: 98 IDDINTIANDSTWEEALFHLYNKIKDSERSLLIISGNQPPIKCDIKLADLRSRLSWGLVI 157 Query: 169 KISLPDDDFLEKV-IVKMFADRQIF-IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 +++ +DD EK+ +KM A ++ F + + + +++ R R++ +L++++D+ + Sbjct: 158 QLNELNDD--EKINTLKMRAAKRGFELPESVGHFLLNRCSRNMHDLYELLNRLDDASWEA 215 Query: 227 GMGITRSLAAEVLK 240 IT +LK Sbjct: 216 HRKITIPFVKNILK 229 >gi|262278142|ref|ZP_06055927.1| DnaA family protein [Acinetobacter calcoaceticus RUH2202] gi|262258493|gb|EEY77226.1| DnaA family protein [Acinetobacter calcoaceticus RUH2202] Length = 232 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 33/173 (19%) Query: 58 SWPSWPSRV-------------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL 104 S PSW + V + G +G+GKS L + D S I SL +L Sbjct: 20 SGPSWGNVVDAVRQLHAGLVSRFYIYGGAGTGKSHLLSAICDSYLEIGKSAIKVSLLELL 79 Query: 105 IDTRKPVL-LEDIDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPVSWG 152 + + LE DL+ +D + +FH++N+ ++ L+ ++R P+ Sbjct: 80 DAPIEAITSLEHYDLVALDDIESISGVPHWQKAVFHLMNN---HEGQLVFSSRVAPIELK 136 Query: 153 VCLPDLCSRLKAATVVKI---SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 + LPDL SRL A VK+ SL D + ++ + + R I D+++ Y++ Sbjct: 137 LELPDLQSRLTQAVSVKVPSGSLYADRY--ALVTSVMSRRGIHFDQQIVDYLL 187 >gi|251791830|ref|YP_003006550.1| DnaA regulatory inactivator Hda [Aggregatibacter aphrophilus NJ8700] gi|247533217|gb|ACS96463.1| DnaA regulatory inactivator Hda [Aggregatibacter aphrophilus NJ8700] Length = 234 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 13/184 (7%) Query: 69 LVGPSGSGKSCL----ANIWSDKSRSTRFSNIAKSL---DSIL--IDTRKPVLLEDIDLL 119 L G GSGKS L + + R + + K+ ++L ++ + V L+D+ + Sbjct: 49 LWGNKGSGKSHLLKGVCQHYLAQQRPALYVPLNKAQYFSPAVLENLEQQALVCLDDLQAV 108 Query: 120 DFN---DTQLFHIINSIHQYDSSLL-MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 N + +F +IN + + +LL M+A P + V LPDL SRL V +++ +D Sbjct: 109 IGNAEWEVAIFDLINRVRETGRTLLIMSADQSPANLPVQLPDLASRLTWGEVYQLAPLND 168 Query: 176 DFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235 V+ K R I + + A ++ +R+ER + ++K+D +L +T Sbjct: 169 KQKIDVLQKAAYQRGIELPDETANFLFKRLERDMKTLFNALEKLDQASLQAQRKLTIPFV 228 Query: 236 AEVL 239 E+L Sbjct: 229 KEIL 232 >gi|229591907|ref|YP_002874026.1| DNA replication initiation factor [Pseudomonas fluorescens SBW25] gi|229363773|emb|CAY51191.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25] Length = 234 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 51/214 (23%), Positives = 94/214 (43%), Gaps = 28/214 (13%) Query: 47 SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI--- 103 +A+ RL ++ W ++ L G G G++ L ++ RF + + + Sbjct: 28 AALGYVERLCEADAGWTESLIYLWGKHGVGRTHLL-----QAACLRFEQMGEPAVYLPLA 82 Query: 104 -LIDTRKPVL--LEDIDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPV 149 L+D + LE +L+ +D Q LFH+ N + LL+ A + P Sbjct: 83 ELMDRGIGIFDHLEQYELVCLDDLQAIAGKADWEEALFHLFNRLRDSGRRLLIAASSSPR 142 Query: 150 SWGVCLPDLCSRLKAATVVKIS-LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 + L DL SRL A + ++ L D+D L + ++ + R + + ++ +I+ R RS Sbjct: 143 ELPIKLADLKSRLTLALIFQMRPLSDEDKLRALQLRA-SRRGLHLTDEVGHFILTRGTRS 201 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + L++++D +L R L LKET Sbjct: 202 MSALFDLLEQLDQASLQ----AQRKLTIPFLKET 231 >gi|53803270|ref|YP_114933.1| DnaA domain-containing protein [Methylococcus capsulatus str. Bath] gi|53757031|gb|AAU91322.1| DnaA domain protein [Methylococcus capsulatus str. Bath] Length = 232 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 41/174 (23%), Positives = 78/174 (44%), Gaps = 16/174 (9%) Query: 66 VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE----------- 114 ++ L G +G GK+ L N ++ S A L LI P +LE Sbjct: 43 LLYLWGDTGLGKTHLVNAACREAFHNGRS--AACLPLALIGECGPAVLEGMENQNLVCLD 100 Query: 115 DIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 DID + D QLF + N++ ++LL+TA P V LPDL +RL V+++ Sbjct: 101 DIDTIAGRDDWERQLFGLFNAMRDAGNTLLITATAPPAELPVALPDLKTRLAWGLVLRLH 160 Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 D+ + + + + ++ +++ R + + L++++D+ +L+ Sbjct: 161 PLTDEHKLAALERRAGMLGLDLSPRVGRFLLSHCRRDMASLQALLEELDHASLA 214 >gi|157375578|ref|YP_001474178.1| DNA replication initiation factor [Shewanella sediminis HAW-EB3] gi|157317952|gb|ABV37050.1| chromosomal replication initiator, DnaA [Shewanella sediminis HAW-EB3] Length = 236 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 46/194 (23%), Positives = 90/194 (46%), Gaps = 23/194 (11%) Query: 65 RVVILVGPSGSGKSCLANIW----SDKSRSTRFS--NIAKSLDSILIDTRKPVLLEDIDL 118 R V L GP SG++ L + +D RS+ + I S+ +L++ LE +DL Sbjct: 47 RSVFLWGPVKSGRTHLMHAACAHANDLERSSFYLPLGIHASISPMLLEG-----LEQLDL 101 Query: 119 LDFNDT-----------QLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAAT 166 + +D +F + N + ++D+ SL+++A P G LPDL SR++ Sbjct: 102 ICIDDVDAIAGHPLWEEAIFDLYNRVSEHDNCSLIVSASVSPNDSGFALPDLVSRMQWGL 161 Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 ++ DD + + A R + + + + +++ R+ R L ++D++D +L Sbjct: 162 NYQLQPMADDEKLAALQRRAAMRGLQLPEDVGRFLLNRLARDLRTLFDVLDRLDKDSLVH 221 Query: 227 GMGITRSLAAEVLK 240 +T E+L+ Sbjct: 222 QRKLTIPFVKEMLR 235 >gi|237807692|ref|YP_002892132.1| DnaA regulatory inactivator Hda [Tolumonas auensis DSM 9187] gi|237499953|gb|ACQ92546.1| DnaA regulatory inactivator Hda [Tolumonas auensis DSM 9187] Length = 234 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 88/212 (41%), Gaps = 28/212 (13%) Query: 44 LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI 103 L ++AI + V LI W G GSG+S L + + S + LD Sbjct: 35 LKNAAIGEGVPLIYFW-----------GCRGSGRSHLLHATCAEINGNGESAVYIPLDRH 83 Query: 104 LIDTRKPVLLEDID-----LLDFNDT---------QLFHIINSIHQYD-SSLLMTARTFP 148 D P +LE ++ LD D LF++ N + SL+M+A T P Sbjct: 84 --DQYSPDILEGMERMPLLCLDNLDAVAGSRVWEESLFNLFNRWKETSRGSLIMSASTAP 141 Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 G+CLPDL SRL ++ DD+ + A R + + +++ R+ R Sbjct: 142 RKLGLCLPDLASRLDWGVSFQLHELDDEGKLGALQLRAALRGFKLPVDVGRFLLNRLSRD 201 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + +D +D+ +L +T EVL+ Sbjct: 202 MRMLLQTLDTLDSASLHAQRKLTIPFIKEVLE 233 >gi|198275620|ref|ZP_03208151.1| hypothetical protein BACPLE_01789 [Bacteroides plebeius DSM 17135] gi|198271249|gb|EDY95519.1| hypothetical protein BACPLE_01789 [Bacteroides plebeius DSM 17135] Length = 471 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 42/214 (19%), Positives = 88/214 (41%), Gaps = 36/214 (16%) Query: 63 PSRV---VILVGPSGSGKSCLANI-------------------------WSDKSRSTRFS 94 P+R + + GPSG GK+ L N ++D R+ F+ Sbjct: 163 PARTFNPLFIYGPSGVGKTHLINAIGTRIKELYPEKRVLYVSAHLFQVQYTDSVRTNHFN 222 Query: 95 NI---AKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSW 151 + +++D ++ID +++ + FHI N +HQ L++T+ PV Sbjct: 223 DFISFYQTIDVLIIDD-----IQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVML 277 Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211 L +R K V ++ PD + + ++ + I + + +YI + + S+ Sbjct: 278 QGMEERLLTRFKWGLVAELEKPDIELRKNILRNKIKRDGLTIPESVISYIAESVNESVRE 337 Query: 212 AEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 E +V+ + ++ I LA ++++ +C Sbjct: 338 LEGIVNSLLAQSILFKREIDLDLAQRIVRKAVKC 371 >gi|220935417|ref|YP_002514316.1| regulatory inactivation of DnaA Hda protein [Thioalkalivibrio sp. HL-EbGR7] gi|219996727|gb|ACL73329.1| regulatory inactivation of DnaA Hda protein [Thioalkalivibrio sp. HL-EbGR7] Length = 233 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 47/198 (23%), Positives = 81/198 (40%), Gaps = 30/198 (15%) Query: 65 RVVILVGPSGSGKSCL-------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID 117 R + L G GSGK+ L A++W + A L + L+ LE +D Sbjct: 43 RQLYLYGEPGSGKTHLLQAACHEASLWGRR---------AAYLPAFLLRQGGAHALEGLD 93 Query: 118 LLDF--------------NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 LD +T LF++IN+ D+ L++ P + LPDL SRL Sbjct: 94 QLDLVCLDGISALVGCVETETGLFNLINASRCRDTRLVLADTHAPRALSAALPDLGSRLV 153 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 V ++ DD V+V+ R + ++ ++++ R L +++++ + Sbjct: 154 WGPVFQLQPLDDAGKRAVLVERARRRGFDLPGEVGEFLLRTCARDLATLMVQLERLEQAS 213 Query: 224 LSRGMGITRSLAAEVLKE 241 L +T A VL E Sbjct: 214 LRDQRRVTLPFARAVLGE 231 >gi|255065691|ref|ZP_05317546.1| DnaA regulatory inactivator Hda [Neisseria sicca ATCC 29256] gi|255050009|gb|EET45473.1| DnaA regulatory inactivator Hda [Neisseria sicca ATCC 29256] Length = 222 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 47/189 (24%), Positives = 80/189 (42%), Gaps = 27/189 (14%) Query: 71 GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS----ILIDTRKPVLLED--------IDL 118 G G+GKS L W +A++LD+ + ID L E ID Sbjct: 43 GEEGAGKSHLLRAW-----------VAQALDAGKKAVYIDAAATPLTEAAFEAEYLAIDQ 91 Query: 119 LD--FNDTQ--LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 ++ N+ Q LF + N L+ + V DL +R+ V ++ Sbjct: 92 IEKLGNEEQALLFAVFNRFRNSGKGFLLLSSEHTPQQLVIREDLRTRMAYCLVYEVKPLT 151 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234 D +V M A RQ+ ID ++ Y++ R + +++D +DN A++ G IT L Sbjct: 152 DREKIDALVSMAAARQVTIDPEIFEYLLNHWRRDMDSLMQMLDTLDNYAVTMGKRITLPL 211 Query: 235 AAEVLKETQ 243 ++LK+ + Sbjct: 212 LRQLLKQQE 220 >gi|118594068|ref|ZP_01551415.1| hypothetical protein MB2181_00330 [Methylophilales bacterium HTCC2181] gi|118439846|gb|EAV46473.1| hypothetical protein MB2181_00330 [Methylophilales bacterium HTCC2181] Length = 197 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 92/198 (46%), Gaps = 33/198 (16%) Query: 47 SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID 106 ++IE+ ++ D + + + G SGSGKS LA+ +K+ Sbjct: 29 NSIERLIKSTDHF------FIYIWGESGSGKSHLASALREKNVK---------------- 66 Query: 107 TRKPVLLEDIDLLDFNDTQ--LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164 ++ED++ D ND Q LF++ N + + L++T P + PDL SRL Sbjct: 67 -----VVEDVENFD-NDQQIELFNLFNKSKKLRNKLVITGNDAPNKMNL-RPDLASRLSW 119 Query: 165 ATVVKISLPDDDFLEKVIVKMFA-DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 V +I P D +KV ++ +A + + D+K+ +Y + ++R L +D +D + Sbjct: 120 ELVYQIK-PLTDEEKKVALEYYAMQKGMSFDRKIISYCMANLKRDLPSLISTLDALDEWS 178 Query: 224 LSRGMGITRSLAAEVLKE 241 L IT L ++LK+ Sbjct: 179 LKAKRPITIPLLIQLLKK 196 >gi|323524829|ref|YP_004226982.1| DnaA regulatory inactivator Hda [Burkholderia sp. CCGE1001] gi|323381831|gb|ADX53922.1| DnaA regulatory inactivator Hda [Burkholderia sp. CCGE1001] Length = 247 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 42/184 (22%), Positives = 77/184 (41%), Gaps = 4/184 (2%) Query: 65 RVVILVGPSGSGKSCL--ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL-LEDIDLLDF 121 R + G +GSG++ L A + RF+ SL + D R + ++D D L Sbjct: 47 RTFYIWGEAGSGRTHLLQALVHEAPPGHARFAGPQSSLAAFGFDPRIALYAIDDCDGLSA 106 Query: 122 -NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 +F++ N + + +S L+ A P DL +RL V ++ D+ Sbjct: 107 AQQIAVFNLFNEVRAHPTSALVAAGNAPPIGMTVREDLRTRLGWGLVFHLAPLPDEAKAA 166 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 V+ + +R I + + AY++ R + L+D +D +L + +T L +L Sbjct: 167 VLKRAARERGIMLADDVPAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRTMLA 226 Query: 241 ETQQ 244 Q Sbjct: 227 SPGQ 230 >gi|294775360|ref|ZP_06740882.1| chromosomal replication initiator protein DnaA [Bacteroides vulgatus PC510] gi|319642816|ref|ZP_07997454.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 3_1_40A] gi|294450817|gb|EFG19295.1| chromosomal replication initiator protein DnaA [Bacteroides vulgatus PC510] gi|317385560|gb|EFV66501.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 3_1_40A] Length = 468 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 40/214 (18%), Positives = 86/214 (40%), Gaps = 33/214 (15%) Query: 60 PSWPSRVVILVGPSGSGKSCLANI-------------------------WSDKSRSTRFS 94 P+ + L GPSG GK+ L N ++D R+ F+ Sbjct: 160 PAKTFNPLFLYGPSGVGKTHLTNAIGTRIKELYPEKRVLYVSAHLFQVQYTDSVRTNHFN 219 Query: 95 NI---AKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSW 151 + +++D ++ID +++ + FHI N +HQ L++T+ PV Sbjct: 220 DFISFYQTIDVLIIDD-----IQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVML 274 Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211 L +R K V ++ PD + + ++ + I + + YI + + S+ Sbjct: 275 QGMEERLLTRFKWGLVAELEKPDVELRKNILRNKIRRDGLNIPETVINYIAENVNESVRE 334 Query: 212 AEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 E +++ + ++ + LA ++++ +C Sbjct: 335 LEGIINSLLAQSIIFKRDVDLDLAERIVRKAVRC 368 >gi|212691082|ref|ZP_03299210.1| hypothetical protein BACDOR_00572 [Bacteroides dorei DSM 17855] gi|237712418|ref|ZP_04542899.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 9_1_42FAA] gi|237726609|ref|ZP_04557090.1| chromosomal replication initiator protein DnaA [Bacteroides sp. D4] gi|265752120|ref|ZP_06087913.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 3_1_33FAA] gi|212666314|gb|EEB26886.1| hypothetical protein BACDOR_00572 [Bacteroides dorei DSM 17855] gi|229435135|gb|EEO45212.1| chromosomal replication initiator protein DnaA [Bacteroides dorei 5_1_36/D4] gi|229453739|gb|EEO59460.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 9_1_42FAA] gi|263236912|gb|EEZ22382.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 3_1_33FAA] Length = 471 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 40/214 (18%), Positives = 86/214 (40%), Gaps = 33/214 (15%) Query: 60 PSWPSRVVILVGPSGSGKSCLANI-------------------------WSDKSRSTRFS 94 P+ + L GPSG GK+ L N ++D R+ F+ Sbjct: 163 PAKTFNPLFLYGPSGVGKTHLTNAIGTRIKELYPEKRVLYVSAHLFQVQYTDSVRTNHFN 222 Query: 95 NI---AKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSW 151 + +++D ++ID +++ + FHI N +HQ L++T+ PV Sbjct: 223 DFISFYQTIDVLIIDD-----IQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVML 277 Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211 L +R K V ++ PD + + ++ + I + + YI + + S+ Sbjct: 278 QGMEERLLTRFKWGLVAELEKPDVELRKNILRNKIRRDGLNIPETVINYIAENVNESVRE 337 Query: 212 AEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 E +++ + ++ + LA ++++ +C Sbjct: 338 LEGIINSLLAQSIIFKRDVDLDLAERIVRKAVRC 371 >gi|94498878|ref|ZP_01305416.1| hypothetical protein RED65_08829 [Oceanobacter sp. RED65] gi|94428510|gb|EAT13482.1| hypothetical protein RED65_08829 [Oceanobacter sp. RED65] Length = 232 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 40/187 (21%), Positives = 88/187 (47%), Gaps = 16/187 (8%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL--LEDIDLLDFNDT 124 + + G SG G S L ++++ +++ L+ L++ V LE++ L+ ++ Sbjct: 46 IFIYGESGCGTSHLLQAACHEAQTHDLNSVYLPLEE-LVEYSPAVFESLENLPLIALDNM 104 Query: 125 Q-----------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI-SL 172 Q +FH+ N + ++M A G+ L DL SRL V ++ L Sbjct: 105 QAIAGLPAWEEAVFHLFNRVRDNGGHIIMAANDSIEGLGIKLADLKSRLHWGLVYELPEL 164 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232 ++D + + ++ +R + + +A Y+V++ME + + ++++D +LS +TR Sbjct: 165 TEEDKMAALKLRAH-NRGLELGDDVAKYVVRQMEGHMDKMFEALNQLDKASLSAKRKVTR 223 Query: 233 SLAAEVL 239 +V+ Sbjct: 224 PFVKDVM 230 >gi|150002609|ref|YP_001297353.1| chromosomal replication initiation protein [Bacteroides vulgatus ATCC 8482] gi|254881428|ref|ZP_05254138.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 4_3_47FAA] gi|149931033|gb|ABR37731.1| chromosomal replication initiator protein DnaA [Bacteroides vulgatus ATCC 8482] gi|254834221|gb|EET14530.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 4_3_47FAA] Length = 471 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 40/214 (18%), Positives = 86/214 (40%), Gaps = 33/214 (15%) Query: 60 PSWPSRVVILVGPSGSGKSCLANI-------------------------WSDKSRSTRFS 94 P+ + L GPSG GK+ L N ++D R+ F+ Sbjct: 163 PAKTFNPLFLYGPSGVGKTHLTNAIGTRIKELYPEKRVLYVSAHLFQVQYTDSVRTNHFN 222 Query: 95 NI---AKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSW 151 + +++D ++ID +++ + FHI N +HQ L++T+ PV Sbjct: 223 DFISFYQTIDVLIIDD-----IQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVML 277 Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211 L +R K V ++ PD + + ++ + I + + YI + + S+ Sbjct: 278 QGMEERLLTRFKWGLVAELEKPDVELRKNILRNKIRRDGLNIPETVINYIAENVNESVRE 337 Query: 212 AEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 E +++ + ++ + LA ++++ +C Sbjct: 338 LEGIINSLLAQSIIFKRDVDLDLAERIVRKAVRC 371 >gi|54298784|ref|YP_125153.1| hypothetical protein lpp2848 [Legionella pneumophila str. Paris] gi|53752569|emb|CAH14001.1| hypothetical protein lpp2848 [Legionella pneumophila str. Paris] Length = 230 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 50/195 (25%), Positives = 100/195 (51%), Gaps = 26/195 (13%) Query: 65 RVVILVGPSGSGKS-----CLANIWSDKSRSTRFSNIA-------KSLDSILIDTRKPVL 112 R++ L GP GSGKS C I + ++S + +A +S++ + + + + Sbjct: 42 RLLYLWGPKGSGKSHLLQACCQAI--NLTQSAIYLPLAFLKEWGPQSIEGL--EDQTLIC 97 Query: 113 LEDIDLLDFNDTQ----LFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATV 167 ++DI+ + ND+ LFH+ N I + SLL+ + P+ + L DL SRL V Sbjct: 98 IDDINTI-ANDSAWEEALFHLYNKIKDSERSLLIISGNQPPIKCDIKLADLRSRLSWGLV 156 Query: 168 VKISLPDDDFLEKV-IVKMFADRQIF-IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 ++++ +DD EK+ +KM A ++ F + + + +++ R R++ +L++++D+ + Sbjct: 157 IQLNELNDD--EKINTLKMRAAKRGFELPESVGHFLLNRCSRNMHDLYELLNRLDDASWE 214 Query: 226 RGMGITRSLAAEVLK 240 IT +LK Sbjct: 215 AHRKITIPFVKNILK 229 >gi|261377806|ref|ZP_05982379.1| DnaA regulatory inactivator Hda [Neisseria cinerea ATCC 14685] gi|269146107|gb|EEZ72525.1| DnaA regulatory inactivator Hda [Neisseria cinerea ATCC 14685] Length = 222 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 44/193 (22%), Positives = 82/193 (42%), Gaps = 21/193 (10%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE---DIDLLD 120 + + + G G+GKS L W ++ + +++ +D L + D D L Sbjct: 36 GQFIYVWGEEGAGKSHLLQAWVAQA-------LEAGKNAVYVDAAAEPLTDSALDADYLA 88 Query: 121 FNDTQ---------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI- 170 + + LF I N L+ V DL +R+ V ++ Sbjct: 89 IDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSESTPQQLVIREDLRTRMAYCLVYEVK 148 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 SL D + ++ +V M A RQ+ ID ++ Y++ R + ++D +DN A++ G I Sbjct: 149 SLTDREKID-ALVSMAAARQVTIDPEIFEYLLNHWRRDMDSLMDMLDTLDNYAVTMGKRI 207 Query: 231 TRSLAAEVLKETQ 243 T L ++LK+ + Sbjct: 208 TLPLLRQLLKQQE 220 >gi|104780562|ref|YP_607060.1| DNA replication initiation factor [Pseudomonas entomophila L48] gi|95109549|emb|CAK14250.1| conserved hypothetical protein; DnaA family protein [Pseudomonas entomophila L48] Length = 261 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 44/209 (21%), Positives = 93/209 (44%), Gaps = 18/209 (8%) Query: 47 SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL-- 104 +A+ RL ++ W ++ L G G G++ L + + + + L +L Sbjct: 55 AALGYVERLCEADAGWTESLIYLWGKQGVGRTHLLQAATHRFQQLGEPAVYLPLAQLLER 114 Query: 105 -------IDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 ++ + V ++D+ ++ + +FH+ N + LL+ A + P + Sbjct: 115 GVELLDHLEQYELVCIDDLHVIAGKADWEEAMFHLFNRLRDSGRRLLLAASSSPRELPIK 174 Query: 155 LPDLCSRLKAATVVKI-SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213 L DL SRL A + ++ + D+D L + ++ + R + + ++ +I+ R RS+ Sbjct: 175 LADLKSRLTLALIFQMRGMSDEDKLRALQLRA-SRRGLHLTDEVGHFILTRGTRSMSALF 233 Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKET 242 L++++D +L R L LKET Sbjct: 234 DLLERLDQASLQ----AQRKLTIPFLKET 258 >gi|87307796|ref|ZP_01089939.1| chromosomal replication initiator protein dnaA [Blastopirellula marina DSM 3645] gi|87289410|gb|EAQ81301.1| chromosomal replication initiator protein dnaA [Blastopirellula marina DSM 3645] Length = 460 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 38/157 (24%), Positives = 63/157 (40%), Gaps = 29/157 (18%) Query: 67 VILVGPSGSGKS-CLANIWSDKSRSTRFSNI----AKSLDSILIDT----------RKPV 111 + + GP GSGK+ L I+ + RS +F + A+ + +D RK Sbjct: 151 LFICGPQGSGKTHLLEGIYGEARRSKKFERVVYLSAEQFTTYFLDALNGSGVANFRRK-- 208 Query: 112 LLEDIDLLDFNDTQLF-----------HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 D DLL +D Q F H ++SI + +++ A P P+L + Sbjct: 209 -YRDADLLIIDDVQFFAGKRATRTELLHTLDSITRRGGQIVLAADKRPTELSALGPELIA 267 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 R V ++ D D K+ K+ A R + + L Sbjct: 268 RFSGGLVCEVHEIDRDTRRKMAEKLCASRDMNASRGL 304 >gi|148361114|ref|YP_001252321.1| DnaA-like family transporter protein [Legionella pneumophila str. Corby] gi|296108445|ref|YP_003620146.1| DnaA-like family protein [Legionella pneumophila 2300/99 Alcoy] gi|148282887|gb|ABQ56975.1| DnaA-like family protein [Legionella pneumophila str. Corby] gi|295650347|gb|ADG26194.1| DnaA-like family protein [Legionella pneumophila 2300/99 Alcoy] Length = 230 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 50/195 (25%), Positives = 100/195 (51%), Gaps = 26/195 (13%) Query: 65 RVVILVGPSGSGKS-----CLANIWSDKSRSTRFSNIA-------KSLDSILIDTRKPVL 112 R++ L GP GSGKS C I + ++S + +A +S++ + + + + Sbjct: 42 RLLYLWGPKGSGKSHLLQACCQAI--NLTQSAIYLPLAFLKEWGPQSIEGL--EDQTLIC 97 Query: 113 LEDIDLLDFNDTQ----LFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATV 167 ++DI+ + ND+ LFH+ N I + SLL+ + P+ + L DL SRL V Sbjct: 98 IDDINTI-ANDSAWEEALFHLYNKIKDSERSLLIISGNQPPIKCDIKLADLRSRLSWGLV 156 Query: 168 VKISLPDDDFLEKV-IVKMFADRQIF-IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 ++++ +DD EK+ +KM A ++ F + + + +++ R R++ +L++++D+ + Sbjct: 157 IQLNELNDD--EKINTLKMRAAKRGFELPESVGHFLLNRCSRNMHDLYELLNQLDDASWE 214 Query: 226 RGMGITRSLAAEVLK 240 IT +LK Sbjct: 215 AHRKITIPFVKNILK 229 >gi|190573155|ref|YP_001971000.1| hypothetical protein Smlt1129 [Stenotrophomonas maltophilia K279a] gi|190011077|emb|CAQ44686.1| conserved hypothetical protein [Stenotrophomonas maltophilia K279a] Length = 236 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 48/191 (25%), Positives = 85/191 (44%), Gaps = 16/191 (8%) Query: 67 VILVGPSGSGKSCLA-NIWSDKSRSTRF----------SNIAKSLDSILIDTRKPVLLED 115 V L G +G+GK+ A + S ++ R + +LD + + R+ V L+ Sbjct: 45 VYLEGAAGTGKTHQALAMCSSAEQAGRLPTYVPLASAAGRVRAALDGL--EARELVALDG 102 Query: 116 IDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +D + N + LF N ++L TA+ P + G+ LPDL SRL V + Sbjct: 103 LDEVAGNRDDEIALFDFHNRARAAGVTVLYTAQKAPEALGLVLPDLRSRLGQCVRVLLQP 162 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232 D++ V+ + R + ID+ +++ R L L+D +D +L+ IT Sbjct: 163 LDEEGRAAVLRERALRRGLAIDEASIEWLLSHTGRELGGLITLLDWLDRESLAAKRRITV 222 Query: 233 SLAAEVLKETQ 243 +VL+E + Sbjct: 223 PFLRQVLEEGR 233 >gi|28199440|ref|NP_779754.1| hypothetical protein PD1561 [Xylella fastidiosa Temecula1] gi|182682168|ref|YP_001830328.1| hypothetical protein XfasM23_1647 [Xylella fastidiosa M23] gi|28057555|gb|AAO29403.1| replication related protein [Xylella fastidiosa Temecula1] gi|182632278|gb|ACB93054.1| DnaA regulatory inactivator Hda [Xylella fastidiosa M23] gi|307578437|gb|ADN62406.1| hypothetical protein XFLM_02025 [Xylella fastidiosa subsp. fastidiosa GB514] Length = 233 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 4/122 (3%) Query: 122 NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD-DDFLEK 180 ++ LF N +LL TAR P G+ LPDL SR+ A ++I+LP DD Sbjct: 111 DEIALFDFHNRARAAGITLLYTARAIPDGLGLTLPDLRSRV--AQCIRIALPTLDDVGRA 168 Query: 181 VIVKMFADRQ-IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 +++ A R+ + +D+ +++ R +R L L++++D +L+ +T VL Sbjct: 169 SVLRERAQRRGLMLDEAAIEWLLSRGDRDLGSLVMLLERLDRESLATKRRVTIPFLRHVL 228 Query: 240 KE 241 E Sbjct: 229 AE 230 >gi|71898099|ref|ZP_00680285.1| ATPas [Xylella fastidiosa Ann-1] gi|71732073|gb|EAO34129.1| ATPas [Xylella fastidiosa Ann-1] Length = 233 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 4/122 (3%) Query: 122 NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD-DDFLEK 180 ++ LF N +LL TAR P G+ LPDL SR+ A ++I+LP DD Sbjct: 111 DEIALFDFHNRARAAGITLLYTARAIPDGLGLTLPDLRSRV--AQCIRIALPTLDDVGRA 168 Query: 181 VIVKMFADRQ-IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 +++ A R+ + +D+ +++ R +R L L++++D +L+ +T VL Sbjct: 169 SVLRERAQRRGLMLDEAAIEWLLSRGDRDLGSLVMLLERLDRESLATKRRVTIPFLRHVL 228 Query: 240 KE 241 E Sbjct: 229 AE 230 >gi|194364750|ref|YP_002027360.1| hypothetical protein Smal_0972 [Stenotrophomonas maltophilia R551-3] gi|194347554|gb|ACF50677.1| DnaA regulatory inactivator Hda [Stenotrophomonas maltophilia R551-3] Length = 235 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 48/191 (25%), Positives = 84/191 (43%), Gaps = 16/191 (8%) Query: 67 VILVGPSGSGKSCLA-NIWSDKSRSTRF----------SNIAKSLDSILIDTRKPVLLED 115 V L G +G+GK+ A + S ++ R + +LD + + R+ V L+ Sbjct: 44 VYLEGAAGTGKTHQALAMCSSAEQAGRLPTYVPLASAAGRVRAALDGL--EARELVALDG 101 Query: 116 IDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +D + N + LF N ++L TA+ P G+ LPDL SRL V + Sbjct: 102 LDEIAGNREDEIALFDFHNRARAAGVTVLYTAQKAPGELGLVLPDLRSRLGQCVRVLLQP 161 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232 D++ V+ + R + ID+ +++ R L L+D +D +L+ IT Sbjct: 162 LDEEGRAAVLRERALRRGLAIDEASIEWLLSHTGRELGGLITLLDWLDRESLAAKRRITV 221 Query: 233 SLAAEVLKETQ 243 +VL+E + Sbjct: 222 PFLRQVLEEGR 232 >gi|15837192|ref|NP_297880.1| hypothetical protein XF0590 [Xylella fastidiosa 9a5c] gi|71274560|ref|ZP_00650848.1| ATPas [Xylella fastidiosa Dixon] gi|71901344|ref|ZP_00683439.1| ATPas [Xylella fastidiosa Ann-1] gi|170730815|ref|YP_001776248.1| hypothetical protein Xfasm12_1717 [Xylella fastidiosa M12] gi|9105454|gb|AAF83400.1|AE003904_21 conserved hypothetical protein [Xylella fastidiosa 9a5c] gi|71164292|gb|EAO14006.1| ATPas [Xylella fastidiosa Dixon] gi|71728888|gb|EAO31024.1| ATPas [Xylella fastidiosa Ann-1] gi|167965608|gb|ACA12618.1| chromosomal replication initiator protein DnaA [Xylella fastidiosa M12] Length = 233 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 4/122 (3%) Query: 122 NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD-DDFLEK 180 ++ LF N +LL TAR P G+ LPDL SR+ A ++I+LP DD Sbjct: 111 DEIALFDFHNRARAAGITLLYTARAIPDGLGLTLPDLRSRV--AQCIRIALPTLDDVGRA 168 Query: 181 VIVKMFADRQ-IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 +++ A R+ + +D+ +++ R +R L L++++D +L+ +T VL Sbjct: 169 SVLRERAQRRGLMLDEAAIEWLLSRGDRDLGSLVMLLERLDRESLATKRRVTIPFLRHVL 228 Query: 240 KE 241 E Sbjct: 229 AE 230 >gi|222055415|ref|YP_002537777.1| Chromosomal replication initiator DnaA [Geobacter sp. FRC-32] gi|221564704|gb|ACM20676.1| Chromosomal replication initiator DnaA [Geobacter sp. FRC-32] Length = 241 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 50/209 (23%), Positives = 86/209 (41%), Gaps = 27/209 (12%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW--PSRVVILVGPSGSGKSCL---- 80 QL F FP D+ +V + + A ++ L G GSGK+ L Sbjct: 2 QLIFDFPVNSKYGFDNFVVCAGNKTAYHFARQLAEGDGTENLLYLYGAKGSGKTHLLTAI 61 Query: 81 ANIWSDKSRSTRFSNIA-KSLDSILIDTRKP----------------VLLEDIDLLDFND 123 AN +S +I+ K +D I D P +L++DI L+ ND Sbjct: 62 ANSIGSQSGLAALPSISFKDIDKI-YDGHYPAEELSKLAEQFKSSPALLIDDIHLIPDND 120 Query: 124 T---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 + +L+ + N + + ++ P L SRL V K+ + DD L Sbjct: 121 SIRVELWQLFNDFYTAGKKIAISGLYPPKELPNLDGHLTSRLLWGLVSKLDISGDDSLRM 180 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSL 209 ++ K+ DRQI + +++ AY++ + R + Sbjct: 181 ILQKLAEDRQIVVPEEVIAYLLVHLHRDI 209 >gi|288941358|ref|YP_003443598.1| DnaA regulatory inactivator Hda [Allochromatium vinosum DSM 180] gi|288896730|gb|ADC62566.1| DnaA regulatory inactivator Hda [Allochromatium vinosum DSM 180] Length = 237 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 79/177 (44%), Gaps = 27/177 (15%) Query: 67 VILVGPSGSGK------SCLANIWSDKSRSTRFSNIAKS-LDSILIDTRKPVLLEDIDLL 119 ++L G SG+GK SC + S R F + + LD +++ LE +DL+ Sbjct: 47 LLLFGASGTGKTHLLQASCQTVVRS--GRQAHFVPLGMADLDPAMLEN-----LEQMDLV 99 Query: 120 DFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168 +D Q LF + N + + SLL P S LPDL SRL Sbjct: 100 AIDDIQCIVGDPAWERALFDLFNRLREQGRSLLGATDAAPDSLPFSLPDLASRLLWGPRY 159 Query: 169 K-ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 + + LPD D E+++++ R + + +L +I+ R L+ ++D+L+L Sbjct: 160 RLLPLPDLD-CEQLLLESARGRGMRLTPELVRFIMSHHARDPASLLDLLARLDSLSL 215 >gi|292491000|ref|YP_003526439.1| DnaA regulatory inactivator Hda [Nitrosococcus halophilus Nc4] gi|291579595|gb|ADE14052.1| DnaA regulatory inactivator Hda [Nitrosococcus halophilus Nc4] Length = 235 Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust. Identities = 46/188 (24%), Positives = 90/188 (47%), Gaps = 14/188 (7%) Query: 65 RVVILVGPSGSGKS--CLANIWSDKSRSTRFSNIAKSLDSIL-------IDTRKPVLLED 115 R + L GPSG GK+ LA + R R + + +I+ ++ V ++D Sbjct: 44 RFLYLWGPSGVGKTHLLLAACQAAAQRGERVAYVPLKRAAIMAPEILRGLEAAALVAIDD 103 Query: 116 IDLLD---FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 ID + + + L H+ N + S LL+ + P + + LPDL SRL V ++ Sbjct: 104 IDRIAGCRYWEESLLHLYNLSREGPSQLLLASSKKPGALPLLLPDLRSRLGWGLVYQLQ- 162 Query: 173 PDDDFLEKVIVKM-FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231 P DD + +K+ A R + + ++AA++++ +R + L+ +++ +++ +T Sbjct: 163 PLDDHQKHAALKLQAAKRGMELPDEVAAFLLRHSDRDMHSLSDLLAQLERASMAAQRRLT 222 Query: 232 RSLAAEVL 239 A +VL Sbjct: 223 IPFARQVL 230 >gi|330815627|ref|YP_004359332.1| Chromosomal replication initiator protein DnaA [Burkholderia gladioli BSR3] gi|327368020|gb|AEA59376.1| Chromosomal replication initiator protein DnaA [Burkholderia gladioli BSR3] Length = 241 Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 81/181 (44%), Gaps = 10/181 (5%) Query: 71 GPSGSGKSCL--ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL-LEDIDLL-DFNDTQL 126 G +GSG+S L A ++ S R+ L +I D R + ++DID + D L Sbjct: 55 GEAGSGRSHLLQALVYDTSYGSARYLTPQSPLGAIAFDPRVSLYAVDDIDAMSDNQQIAL 114 Query: 127 FHIINSIHQYDSSLLMTAR-TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 F++ N + + SS + A P++ V DL +RL V ++ D V + Sbjct: 115 FNLFNEVRAHPSSAFVGAGPAAPLALDVR-EDLRTRLGWGLVFHLAPLSDADKAAVFKRA 173 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT----RSLAAEVLKE 241 DR I I + AY++ R + L+D +D +L + +T R+L A + +E Sbjct: 174 ARDRGIAIADDVPAYLLTHYRRDMPSLMALLDALDRFSLEQKRAVTLPLLRTLLATLERE 233 Query: 242 T 242 Sbjct: 234 A 234 >gi|15601882|ref|NP_244954.1| DNA replication initiation factor [Pasteurella multocida subsp. multocida str. Pm70] gi|12720218|gb|AAK02101.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 254 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 31/116 (26%), Positives = 59/116 (50%), Gaps = 1/116 (0%) Query: 126 LFHIINSIHQYDSSLL-MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 +F + N I +++LL ++A P + V LPDL SRL+ ++ +D V+ K Sbjct: 138 IFDLFNRIKSVENTLLVISANQSPTALPVSLPDLASRLRWGESYQLVPLNDQQKIHVLQK 197 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 R I + ++A ++++R+ER + + + K+D +L +T E+LK Sbjct: 198 NAHQRGIELPDEVANFLLKRLERDMKTLFEALSKLDKASLQAQRKLTIPFVKEILK 253 >gi|289664537|ref|ZP_06486118.1| hypothetical protein XcampvN_16063 [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289667896|ref|ZP_06488971.1| hypothetical protein XcampmN_05173 [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 233 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 47/179 (26%), Positives = 81/179 (45%), Gaps = 16/179 (8%) Query: 67 VILVGPSGSGKSCLA-NIWSDKSRSTR------FSNIAKSLDSIL--IDTRKPVLLEDID 117 + L G +G+GK+ LA ++ + ++ R A L L ++ R V L+ ++ Sbjct: 44 LYLSGSAGTGKTHLALSLCAAAEQAGRTPAYLPLQAAAGRLRDALEALEGRSLVALDGVE 103 Query: 118 LLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP- 173 + ++ LF N +LL TAR P + LPDL SRL + ++I LP Sbjct: 104 SIAGQRDDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLHSRL--SQCIRIGLPV 161 Query: 174 -DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231 DD V+ R + +D+ +++ ER L L+D++D +L+ IT Sbjct: 162 LDDAARAAVLRDRAQRRGLALDEAAIDWLLTHSERELAGLVALLDRLDRESLAAKRRIT 220 >gi|150006675|ref|YP_001301418.1| chromosomal replication initiation protein [Parabacteroides distasonis ATCC 8503] gi|262384875|ref|ZP_06078007.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 2_1_33B] gi|298377645|ref|ZP_06987596.1| ATPase [Bacteroides sp. 3_1_19] gi|301308943|ref|ZP_07214888.1| ATPase involved in DNA replication initiation [Bacteroides sp. 20_3] gi|149935099|gb|ABR41796.1| chromosomal replication initiator protein DnaA [Parabacteroides distasonis ATCC 8503] gi|262293591|gb|EEY81527.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 2_1_33B] gi|298265348|gb|EFI07010.1| ATPase [Bacteroides sp. 3_1_19] gi|300832969|gb|EFK63594.1| ATPase involved in DNA replication initiation [Bacteroides sp. 20_3] Length = 465 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 36/171 (21%), Positives = 68/171 (39%), Gaps = 33/171 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSR----------------------------STRFSNIAK 98 + + GPSG GK+ L + + R + F N + Sbjct: 166 LFIFGPSGVGKTHLCHAIGTRIRELHPEKKVLYVSSHLFRVQFTDAIRKNTTNDFLNFYQ 225 Query: 99 SLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158 ++D +L+D ++++ +D FHI N +HQ L++T+ PV L Sbjct: 226 NIDVLLLDD-----IQELIGMDKTQNTFFHIFNHLHQLGKQLILTSDKPPVDLQGMEERL 280 Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209 +RLK ++S PD D +K++ I I ++ +I + ++ Sbjct: 281 ITRLKWGLTAELSRPDLDLRKKILKNKINHDGIMIPDEVFNFIANNVTENV 331 >gi|255016564|ref|ZP_05288690.1| chromosomal replication initiation protein [Bacteroides sp. 2_1_7] gi|256842198|ref|ZP_05547702.1| chromosomal replication initiator protein DnaA [Parabacteroides sp. D13] gi|256736082|gb|EEU49412.1| chromosomal replication initiator protein DnaA [Parabacteroides sp. D13] Length = 471 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 37/171 (21%), Positives = 71/171 (41%), Gaps = 33/171 (19%) Query: 67 VILVGPSGSGKSCLANI-------------------------WSD---KSRSTRFSNIAK 98 + + GPSG GK+ L + ++D K+ + F N + Sbjct: 172 LFIFGPSGVGKTHLCHAIGTRIRELHPEKKVLYVSSHLFRVQFTDAIRKNTTNDFLNFYQ 231 Query: 99 SLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158 ++D +L+D ++++ +D FHI N +HQ L++T+ PV L Sbjct: 232 NIDVLLLDD-----IQELIGMDKTQNTFFHIFNHLHQLGKQLILTSDKPPVDLQGMEERL 286 Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209 +RLK ++S PD D +K++ I I ++ +I + ++ Sbjct: 287 ITRLKWGLTAELSRPDLDLRKKILKNKINHDGIMIPDEVFNFIANNVTENV 337 >gi|167586242|ref|ZP_02378630.1| hypothetical protein BuboB_12938 [Burkholderia ubonensis Bu] Length = 244 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 48/183 (26%), Positives = 78/183 (42%), Gaps = 8/183 (4%) Query: 63 PSRVVILVGPSGSGKS-CLANIWSDKSRS-TRFSNIAKSLDSILIDTRKPVL-LEDIDLL 119 P R + G GSG+S L + SD S R+ L + D R + ++D D + Sbjct: 46 PDRSFYIWGEPGSGRSHLLQALVSDASYGYARYLTPQSPLGAFTFDPRIGIYAIDDCDRM 105 Query: 120 DFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 +DTQ LF++ N + + SS + A DL +RL V +S P D Sbjct: 106 --SDTQQVALFNLFNEVRAHPSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLSPPSDA 163 Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236 V+ +R I + +AAY++ R + L+D +D +L + +T L Sbjct: 164 GKIAVLKLAAKERGIALTDDIAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLR 223 Query: 237 EVL 239 +L Sbjct: 224 RML 226 >gi|256822898|ref|YP_003146861.1| DnaA regulatory inactivator Hda [Kangiella koreensis DSM 16069] gi|256796437|gb|ACV27093.1| DnaA regulatory inactivator Hda [Kangiella koreensis DSM 16069] Length = 229 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 4/118 (3%) Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 T +F++ N + + S L+T P + L DL SRL A + I +D+ EK+I+ Sbjct: 112 TAIFNLYNQLKEQGKSFLITGLNAPSQLALELKDLKSRLSAMFIYNIKPLNDE--EKLIL 169 Query: 184 --KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + ++ + + ++A Y++ R +R L ++DK+D +L +T EVL Sbjct: 170 LQRKAEEKGLELSNEVAHYLLARQQRDLPTLLGILDKLDQASLQAKRKLTIPFIKEVL 227 >gi|307728542|ref|YP_003905766.1| DnaA regulatory inactivator Hda [Burkholderia sp. CCGE1003] gi|307583077|gb|ADN56475.1| DnaA regulatory inactivator Hda [Burkholderia sp. CCGE1003] Length = 247 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 41/184 (22%), Positives = 76/184 (41%), Gaps = 4/184 (2%) Query: 65 RVVILVGPSGSGKSCL--ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL-LEDIDLLDF 121 R + G +GSG++ L A + RF+ SL + D R + ++D D L Sbjct: 47 RTFYVWGEAGSGRTHLLQALVHEAPPGHARFAGPQSSLAAFGFDPRVALYAIDDCDALSA 106 Query: 122 -NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 +F++ N + + +S L+ P DL +RL V ++ D+ Sbjct: 107 AQQIAVFNLFNEVRAHPTSALVATGNAPPIGMTVREDLRTRLGWGLVFHLAPLPDEAKAA 166 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 V+ + +R I + + AY++ R + L+D +D +L + +T L +L Sbjct: 167 VLKRAARERGIMLADDVPAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRTMLA 226 Query: 241 ETQQ 244 Q Sbjct: 227 SPAQ 230 >gi|88859787|ref|ZP_01134427.1| putative regulatory factor involved in inactivation of DnaA [Pseudoalteromonas tunicata D2] gi|88818804|gb|EAR28619.1| putative regulatory factor involved in inactivation of DnaA [Pseudoalteromonas tunicata D2] Length = 236 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 85/176 (48%), Gaps = 14/176 (7%) Query: 69 LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLL 119 L G + SGKS L ++ S I S+ I+ +++ V ++D+ L+ Sbjct: 52 LCGLADSGKSHLLYATCVYAQERGLSTILLSMKEIIGLEPSMLDGLESLSVVCIDDLHLI 111 Query: 120 DFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI-SLPDD 175 + + +F+ N ++ D LL+ + P + LPDL SRLK T +I S+ DD Sbjct: 112 AGHPNWERAMFNFYNRFNEPDKLLLVASDLLPDMITIQLPDLESRLKWGTTFQIRSMSDD 171 Query: 176 DFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231 D E +VK R + + + A +++ R+ R + ++DK+D+ ++ + +T Sbjct: 172 DKAE-ALVKRAKMRGLELSIECARFLLTRLSRDMRALLDVLDKLDHASMVQQRKLT 226 >gi|120553881|ref|YP_958232.1| chromosomal replication initiator, DnaA [Marinobacter aquaeolei VT8] gi|120323730|gb|ABM18045.1| regulatory inactivation of DnaA Hda protein [Marinobacter aquaeolei VT8] Length = 232 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 32/154 (20%), Positives = 73/154 (47%), Gaps = 12/154 (7%) Query: 66 VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDI 116 VV++ G S +GKS L +S + + S+ +L +D+ + L+D+ Sbjct: 45 VVVICGDSDTGKSHLLQAICHESEQMGKTAVCISIVELLPFGPDALAGLDSHDVICLDDL 104 Query: 117 DLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 + + + +FH+ N + + L+++ P S L DL SRL ++++ + Sbjct: 105 EHAAADPGWEEAVFHLYNRVLDRNGLLVVSLSEVPASLPFGLADLGSRLAHGLLIQLGVY 164 Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER 207 D+ +++++ R + + + +A +I++R R Sbjct: 165 RDEDRQRILMARAEQRGLVMSEDVAGFIMRRAPR 198 >gi|114319679|ref|YP_741362.1| regulatory inactivation of DnaA Hda protein [Alkalilimnicola ehrlichii MLHE-1] gi|114226073|gb|ABI55872.1| regulatory inactivation of DnaA Hda protein [Alkalilimnicola ehrlichii MLHE-1] Length = 245 Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust. Identities = 46/202 (22%), Positives = 85/202 (42%), Gaps = 14/202 (6%) Query: 38 ISRDDLLVHSAIEQAVRLID-SWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNI 96 I+ D V A +QA+ + + + R++ L G GKS L ++ F Sbjct: 25 IASLDSFVAGANQQALDAVRRAAMGFGDRLLFLYGQGPVGKSHLLQAACREAGERGFKAA 84 Query: 97 AKSLDSILIDTRKPVL--LEDIDLLDFNDTQL-----------FHIINSIHQYDSSLLMT 143 L+ VL +E +DLL +D Q+ F++ N ++++ Sbjct: 85 YLPLNEFQGMPPGSVLAGMESMDLLALDDLQVLAGEADWEEHFFYLFNRTRASGGHMILS 144 Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203 A PV + LPDL SRL+ +++ DD + + A R + + +++ Sbjct: 145 ADRRPVDLSLVLPDLASRLQWGLTLRLEPLDDVGKLQGLQARAAARGLELPDDTGRFLLS 204 Query: 204 RMERSLVFAEKLVDKMDNLALS 225 R R L +L+D++D +L+ Sbjct: 205 RYARDLGGLFQLLDRLDGASLA 226 >gi|325524974|gb|EGD02898.1| DnaA regulatory inactivator Hda [Burkholderia sp. TJI49] Length = 244 Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust. Identities = 48/183 (26%), Positives = 78/183 (42%), Gaps = 8/183 (4%) Query: 63 PSRVVILVGPSGSGKS-CLANIWSDKSRS-TRFSNIAKSLDSILIDTRKPVL-LEDIDLL 119 P R + G GSG+S L + SD S R+ L + D R + ++D D + Sbjct: 46 PDRSFYIWGEPGSGRSHLLQALVSDASYGYARYLTPQSPLGAFTFDPRIGIYAIDDCDRM 105 Query: 120 DFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 +DTQ LF++ N + + SS + A DL +RL V +S P D Sbjct: 106 --SDTQQVALFNLFNEVRAHPSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLSPPSDA 163 Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236 V+ +R I + +AAY++ R + L+D +D +L + +T L Sbjct: 164 GKIDVLKLAAKERGIALTDDIAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLR 223 Query: 237 EVL 239 +L Sbjct: 224 RML 226 >gi|254253159|ref|ZP_04946477.1| hypothetical protein BDAG_02411 [Burkholderia dolosa AUO158] gi|124895768|gb|EAY69648.1| hypothetical protein BDAG_02411 [Burkholderia dolosa AUO158] Length = 259 Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 75/181 (41%), Gaps = 4/181 (2%) Query: 63 PSRVVILVGPSGSGKS-CLANIWSDKSRS-TRFSNIAKSLDSILIDTRKPVL-LEDIDLL 119 P R + G GSG+S L + SD S R+ L + D R + ++D D + Sbjct: 61 PDRSFYIWGEPGSGRSHLLQALVSDASYGYARYLTPQSPLGAFTFDPRIGIYAIDDCDRM 120 Query: 120 -DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178 D LF++ N + + SS + A DL +RL V +S P D Sbjct: 121 SDAQQVALFNLFNEVRAHPSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLSPPSDAGK 180 Query: 179 EKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238 V+ +R I + +AAY++ R + L+D +D +L + +T L + Sbjct: 181 IDVLKLAAKERGIALTDDIAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRRM 240 Query: 239 L 239 L Sbjct: 241 L 241 >gi|261868685|ref|YP_003256607.1| DnaA regulatory inactivator Hda [Aggregatibacter actinomycetemcomitans D11S-1] gi|293391763|ref|ZP_06636097.1| DnaA regulatory inactivator Hda [Aggregatibacter actinomycetemcomitans D7S-1] gi|261414017|gb|ACX83388.1| DnaA regulatory inactivator Hda [Aggregatibacter actinomycetemcomitans D11S-1] gi|290952297|gb|EFE02416.1| DnaA regulatory inactivator Hda [Aggregatibacter actinomycetemcomitans D7S-1] Length = 234 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 48/189 (25%), Positives = 86/189 (45%), Gaps = 27/189 (14%) Query: 71 GPSGSGKSCL----ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI---DLLDFND 123 G GSGKS L + + + R + + K+ P +LE++ D++ +D Sbjct: 51 GNRGSGKSHLLKAICHHYLTQQRPALYVPLNKA------QYFSPAVLENLERQDVVCLDD 104 Query: 124 TQ-----------LFHIINSIHQYDSSLL-MTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 Q +F +IN I + +LL M A P + LPDL SRL V ++ Sbjct: 105 VQEVIGNAEWELAIFDLINRIRETGKTLLLMGADQSPANLAARLPDLHSRLTWGEVYQL- 163 Query: 172 LPDDDFLEKVIVKMFA-DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 +P DD + +++ A R I + + A ++ +R+ER + + ++K+D +L + Sbjct: 164 MPLDDAQKIAVLQENAHQRGIELPDETANFLFKRLERDMKTLFEALEKLDQASLQAQRKL 223 Query: 231 TRSLAAEVL 239 T E+L Sbjct: 224 TIPFVKEIL 232 >gi|121634846|ref|YP_975091.1| hypothetical protein NMC1040 [Neisseria meningitidis FAM18] gi|161869962|ref|YP_001599131.1| DnaA regulatory inactivator Hda [Neisseria meningitidis 053442] gi|120866552|emb|CAM10302.1| hypothetical protein NMC1040 [Neisseria meningitidis FAM18] gi|161595515|gb|ABX73175.1| DnaA-related protein [Neisseria meningitidis 053442] Length = 243 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 42/187 (22%), Positives = 79/187 (42%), Gaps = 9/187 (4%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI---LIDTRKPVLLEDIDLLD 120 + + + G G+GKS L W +++ A +D+ L D +D ++ Sbjct: 57 GQFIYVWGEEGAGKSHLLQAWV--AQALEAGKNAAYIDAASMPLTDAAFEAEYLAVDQVE 114 Query: 121 --FNDTQ--LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 N+ Q LF I N L+ + V DL +R+ V ++ D Sbjct: 115 KLGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTRMAYCLVYEVKPLTDQ 174 Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236 + M A RQ+ +D ++ Y+++ R + ++D +DN A++ G IT L Sbjct: 175 EKIDALASMAAARQVTVDSEIFEYLLKHWRRDMDSLMMMLDTLDNYAVTMGKRITLPLLR 234 Query: 237 EVLKETQ 243 ++LK+ + Sbjct: 235 QLLKQQE 241 >gi|52842998|ref|YP_096797.1| DnaA-like family protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52630109|gb|AAU28850.1| DnaA-like family protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 245 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 49/195 (25%), Positives = 100/195 (51%), Gaps = 26/195 (13%) Query: 65 RVVILVGPSGSGKS-----CLANIWSDKSRSTRFSNIA-------KSLDSILIDTRKPVL 112 R++ L GP GSGKS C I + ++S + +A +S++ + + + + Sbjct: 57 RLLYLWGPKGSGKSHLLQACCQAI--NLTQSAIYLPLAFLKEWGPQSIEGL--EDQTLIC 112 Query: 113 LEDIDLLDFNDTQ----LFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATV 167 ++DI+ + ND+ LFH+ N I + SLL+ + P+ + L DL SRL V Sbjct: 113 IDDINTI-ANDSAWEEALFHLYNKIKDSERSLLIISGNQPPIKCDIKLADLRSRLSWGLV 171 Query: 168 VKISLPDDDFLEKV-IVKMFADRQIF-IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 ++++ +DD EK+ +KM A ++ F + + + +++ R R++ ++++++D+ + Sbjct: 172 IQLNELNDD--EKINTLKMRAAKRGFELPESVGHFLLNRCSRNMHDLYEILNQLDDASWE 229 Query: 226 RGMGITRSLAAEVLK 240 IT +LK Sbjct: 230 AHRKITIPFVKNILK 244 >gi|218768138|ref|YP_002342650.1| DnaA regulatory inactivator Hda [Neisseria meningitidis Z2491] gi|121052146|emb|CAM08463.1| hypothetical protein NMA1279 [Neisseria meningitidis Z2491] gi|254671090|emb|CBA08030.1| conserved hypothetical protein [Neisseria meningitidis alpha153] gi|319410380|emb|CBY90734.1| DnaA-homolog protein Hda [Neisseria meningitidis WUE 2594] Length = 243 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 42/187 (22%), Positives = 79/187 (42%), Gaps = 9/187 (4%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI---LIDTRKPVLLEDIDLLD 120 + + + G G+GKS L W +++ A +D+ L D +D ++ Sbjct: 57 GQFIYVWGEEGAGKSHLLQAWV--AQALEAGKNAAYIDAASMPLTDAAFEAEYLAVDQVE 114 Query: 121 --FNDTQ--LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 N+ Q LF I N L+ + V DL +R+ V ++ D Sbjct: 115 KLGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTRMAYCLVYEVKPLTDQ 174 Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236 + M A RQ+ +D ++ Y+++ R + ++D +DN A++ G IT L Sbjct: 175 EKIDALASMAAARQVTVDSEIFEYLLKHWRRDMDSLMMMLDTLDNYAVTMGKRITLPLLR 234 Query: 237 EVLKETQ 243 ++LK+ + Sbjct: 235 QLLKQQE 241 >gi|254673821|emb|CBA09561.1| conserved hypothetical protein [Neisseria meningitidis alpha275] Length = 249 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 42/187 (22%), Positives = 79/187 (42%), Gaps = 9/187 (4%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI---LIDTRKPVLLEDIDLLD 120 + + + G G+GKS L W +++ A +D+ L D +D ++ Sbjct: 63 GQFIYVWGEEGAGKSHLLQAWV--AQALEAGKNAAYIDAASMPLTDAAFEAEYLAVDQVE 120 Query: 121 --FNDTQ--LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 N+ Q LF I N L+ + V DL +R+ V ++ D Sbjct: 121 KLGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTRMAYCLVYEVKPLTDQ 180 Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236 + M A RQ+ +D ++ Y+++ R + ++D +DN A++ G IT L Sbjct: 181 EKIDALASMAAARQVTVDSEIFEYLLKHWRRDMDSLMMMLDTLDNYAVTMGKRITLPLLR 240 Query: 237 EVLKETQ 243 ++LK+ + Sbjct: 241 QLLKQQE 247 >gi|260913124|ref|ZP_05919606.1| DnaA regulatory inactivator Hda [Pasteurella dagmatis ATCC 43325] gi|260632711|gb|EEX50880.1| DnaA regulatory inactivator Hda [Pasteurella dagmatis ATCC 43325] Length = 232 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 44/183 (24%), Positives = 88/183 (48%), Gaps = 13/183 (7%) Query: 71 GPSGSGKSCLANIWSD----KSRSTRFSNIAKSL---DSIL--IDTRKPVLLEDIDLLDF 121 G SGKS L S+ + R + + KS ++L ++ ++ V L+D+ + Sbjct: 49 GEQSSGKSHLLKAISNHFFLQQRPAIYVPLEKSCYFSPAVLENLEYQQLVCLDDLHTVIG 108 Query: 122 NDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 ND +F + N I + +LL+ +A P + V LPDL SRL+ + +++ D Sbjct: 109 NDEWELAIFDLFNRIKEIGKTLLLISANQSPTALPVKLPDLASRLRWGEIYQLTPLTDIQ 168 Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237 +V+ + +R I + + + ++++R+ER + + ++D +L +T E Sbjct: 169 KIQVLQQHAKERGIELPDETSNFLLKRLERDMQTLLDALTQLDQASLQAQRKLTIPFVKE 228 Query: 238 VLK 240 +LK Sbjct: 229 ILK 231 >gi|225023936|ref|ZP_03713128.1| hypothetical protein EIKCOROL_00802 [Eikenella corrodens ATCC 23834] gi|224942961|gb|EEG24170.1| hypothetical protein EIKCOROL_00802 [Eikenella corrodens ATCC 23834] Length = 219 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 70/170 (41%), Gaps = 5/170 (2%) Query: 67 VILVGPSGSGKSCL----ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 V + GP+G+GKS L A S R+ N A + + L+ ID LD + Sbjct: 38 VYVWGPAGAGKSHLLQAWAAQAEAAGLSARYLNAANEPLHEMPPAGCHLALDQIDSLDAD 97 Query: 123 D-TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 +LF+ N I Q L+ + P DL +R+ V +I D+ Sbjct: 98 GQAELFNFCNHIRQSRQGALLIGASVPPPRLAVREDLRTRMGYCLVYEIKPLSDEEKIAA 157 Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231 +V+ RQI I + Y++ R + ++D +D AL+ IT Sbjct: 158 LVEAARRRQIRISPDIFRYLLHHWRRDIGSLMAMLDALDRHALASHRPIT 207 >gi|52425933|ref|YP_089070.1| DNA replication initiation factor [Mannheimia succiniciproducens MBEL55E] gi|52307985|gb|AAU38485.1| DnaA protein [Mannheimia succiniciproducens MBEL55E] Length = 232 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 46/184 (25%), Positives = 93/184 (50%), Gaps = 17/184 (9%) Query: 71 GPSGSGKSCLANIWSDK----SRSTRFSNIAKSL---DSIL--IDTRKPVLLEDIDLLDF 121 G GSGKS L S++ +R + ++KS ++L ++ + V L+D+ L+ Sbjct: 49 GAEGSGKSHLLKAVSNQFLLQNRPAIYVPLSKSQYFSPAVLENLEYQDAVCLDDLQLVVG 108 Query: 122 NDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 N+ +F + N I + +++LL+ +A P + + LPDL SRL + +++ D+ Sbjct: 109 NEEWEIAIFDLFNRIKEKENTLLLISANQSPNALPIKLPDLASRLTWGEIYHLNVFTDE- 167 Query: 178 LEKVIV--KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235 EK++V + +R I + + A ++++R++R + + K+D +L +T Sbjct: 168 -EKILVLQRNAHERGIELPDETANFLLKRLDRDMHTLFDALLKLDKASLQAQRKLTIPFV 226 Query: 236 AEVL 239 E L Sbjct: 227 KETL 230 >gi|59801246|ref|YP_207958.1| hypothetical protein NGO0841 [Neisseria gonorrhoeae FA 1090] gi|194098531|ref|YP_002001593.1| DnaA regulatory inactivator Hda [Neisseria gonorrhoeae NCCP11945] gi|239998920|ref|ZP_04718844.1| hypothetical protein Ngon3_05471 [Neisseria gonorrhoeae 35/02] gi|240014169|ref|ZP_04721082.1| hypothetical protein NgonD_05917 [Neisseria gonorrhoeae DGI18] gi|240016604|ref|ZP_04723144.1| hypothetical protein NgonFA_05473 [Neisseria gonorrhoeae FA6140] gi|240112839|ref|ZP_04727329.1| hypothetical protein NgonM_04542 [Neisseria gonorrhoeae MS11] gi|240115595|ref|ZP_04729657.1| hypothetical protein NgonPID1_04995 [Neisseria gonorrhoeae PID18] gi|240121732|ref|ZP_04734694.1| hypothetical protein NgonPI_08222 [Neisseria gonorrhoeae PID24-1] gi|240123447|ref|ZP_04736403.1| hypothetical protein NgonP_05800 [Neisseria gonorrhoeae PID332] gi|240125692|ref|ZP_04738578.1| hypothetical protein NgonSK_05633 [Neisseria gonorrhoeae SK-92-679] gi|240128149|ref|ZP_04740810.1| hypothetical protein NgonS_05807 [Neisseria gonorrhoeae SK-93-1035] gi|254493704|ref|ZP_05106875.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|260440595|ref|ZP_05794411.1| DnaA regulatory inactivator Hda [Neisseria gonorrhoeae DGI2] gi|268594762|ref|ZP_06128929.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268598915|ref|ZP_06133082.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268601269|ref|ZP_06135436.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|268682070|ref|ZP_06148932.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268684280|ref|ZP_06151142.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|268686538|ref|ZP_06153400.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|291043900|ref|ZP_06569616.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|293399108|ref|ZP_06643273.1| DnaA regulatory inactivator Hda [Neisseria gonorrhoeae F62] gi|59718141|gb|AAW89546.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090] gi|193933821|gb|ACF29645.1| DnaA-related protein [Neisseria gonorrhoeae NCCP11945] gi|226512744|gb|EEH62089.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268548151|gb|EEZ43569.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268583046|gb|EEZ47722.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268585400|gb|EEZ50076.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|268622354|gb|EEZ54754.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268624564|gb|EEZ56964.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|268626822|gb|EEZ59222.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|291012363|gb|EFE04352.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|291610522|gb|EFF39632.1| DnaA regulatory inactivator Hda [Neisseria gonorrhoeae F62] gi|317164209|gb|ADV07750.1| DnaA regulatory inactivator Hda [Neisseria gonorrhoeae TCDC-NG08107] Length = 222 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 42/180 (23%), Positives = 76/180 (42%), Gaps = 9/180 (5%) Query: 71 GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI---LIDTRKPVLLEDIDLLD--FNDTQ 125 G G+GKS L W +++ A +D+ L D +D ++ N+ Q Sbjct: 43 GEEGAGKSHLLQAWV--AQALEAGKNAAYIDAASMPLTDAAFEAEYLAVDQVEKLGNEEQ 100 Query: 126 --LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 LF I N L+ + V DL +R+ V ++ D + Sbjct: 101 ALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTRMAYCLVYEVKPLTDQEKIDALA 160 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 M A RQ+ +D ++ Y+++ R + ++D +DN A++ G IT L ++LK+ + Sbjct: 161 NMAAARQVTVDSEIFEYLLKHWRRDMDSLMMMLDTLDNYAVTMGKRITLPLLRQLLKQQE 220 >gi|115350708|ref|YP_772547.1| DnaA regulatory inactivator Hda [Burkholderia ambifaria AMMD] gi|115280696|gb|ABI86213.1| Chromosomal replication initiator, DnaA [Burkholderia ambifaria AMMD] Length = 318 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 45/181 (24%), Positives = 75/181 (41%), Gaps = 4/181 (2%) Query: 63 PSRVVILVGPSGSGKS-CLANIWSDKSRS-TRFSNIAKSLDSILIDTRKPVL-LEDIDLL 119 P R + G GSG++ L + SD S R+ L + D R + ++D D + Sbjct: 120 PDRSFYIWGEPGSGRTHLLQALVSDASYGYARYLTPQSPLGAFTFDPRIGIYAIDDCDRM 179 Query: 120 -DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178 D LF++ N + + SS + A DL +RL V +S P D Sbjct: 180 SDTQQVALFNLFNEVRAHPSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLSPPSDAGK 239 Query: 179 EKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238 V+ +R I + +AAY++ R + L+D +D +L + +T L + Sbjct: 240 IAVLKLAAKERGIALTDDIAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRRM 299 Query: 239 L 239 L Sbjct: 300 L 300 >gi|34499069|ref|NP_903284.1| DnaA regulatory inactivator Hda [Chromobacterium violaceum ATCC 12472] gi|34104919|gb|AAQ61276.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 224 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 53/185 (28%), Positives = 84/185 (45%), Gaps = 13/185 (7%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS---ILIDTRKP---VLLEDIDL 118 R + L G G GK+ L W + + R A LD L D + + ++ +D Sbjct: 38 RFIYLWGEPGCGKTHLLQAWI--AHAERLGRAAIYLDGKGDHLPDFAREASFIAVDHVDD 95 Query: 119 LDFNDT-QLFHIINSIHQY-DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI-SLPDD 175 L +D LF NS+ + + LLM R PV+ V DL +RL V+++ +L DD Sbjct: 96 LAPDDQIMLFSFYNSLKEGGEGRLLMAGRKPPVALSVR-DDLRTRLGWGLVLEVKALSDD 154 Query: 176 DFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235 D L + A+RQ+ I + Y++ R L ++D +D +L+ IT L Sbjct: 155 DKL-AALRSHAANRQLSIPDDVYRYLLTHWRRDLTSLISMIDMLDRYSLALRRPITVPLV 213 Query: 236 AEVLK 240 VL+ Sbjct: 214 KNVLQ 218 >gi|261400250|ref|ZP_05986375.1| DnaA regulatory inactivator Hda [Neisseria lactamica ATCC 23970] gi|313668273|ref|YP_004048557.1| hypothetical protein NLA_9620 [Neisseria lactamica ST-640] gi|269210054|gb|EEZ76509.1| DnaA regulatory inactivator Hda [Neisseria lactamica ATCC 23970] gi|313005735|emb|CBN87189.1| hypothetical protein NLA_9620 [Neisseria lactamica 020-06] Length = 222 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 42/187 (22%), Positives = 79/187 (42%), Gaps = 9/187 (4%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI---LIDTRKPVLLEDIDLLD 120 + + + G G+GKS L W +++ A +D+ L D +D ++ Sbjct: 36 GQFIYVWGEEGAGKSHLLQAWV--AQALEAGKNAAYIDAASMPLTDAAFEAEYLAVDQVE 93 Query: 121 --FNDTQ--LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 N+ Q LF I N L+ + V DL +R+ V ++ D Sbjct: 94 KLGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTRMAYCLVYEVKPLTDQ 153 Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236 + M A RQ+ +D ++ Y+++ R + ++D +DN A++ G IT L Sbjct: 154 EKIDALASMAAARQVTVDSEIFEYLLKHWRRDMDSLMMMLDTLDNYAVTMGKRITLPLLR 213 Query: 237 EVLKETQ 243 ++LK+ + Sbjct: 214 QLLKQQE 220 >gi|296314280|ref|ZP_06864221.1| DnaA regulatory inactivator Hda [Neisseria polysaccharea ATCC 43768] gi|296839079|gb|EFH23017.1| DnaA regulatory inactivator Hda [Neisseria polysaccharea ATCC 43768] Length = 222 Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust. Identities = 42/187 (22%), Positives = 79/187 (42%), Gaps = 9/187 (4%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI---LIDTRKPVLLEDIDLLD 120 + + + G G+GKS L W +++ A +D+ L D +D ++ Sbjct: 36 GQFIYVWGEEGAGKSHLLQAWV--AQALEAGKNAAYIDAASMPLTDAAFETEYLAVDQVE 93 Query: 121 --FNDTQ--LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 N+ Q LF I N L+ + V DL +R+ V ++ D Sbjct: 94 KLGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTRMAYCLVYEVKPLTDQ 153 Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236 + M A RQ+ +D ++ Y+++ R + ++D +DN A++ G IT L Sbjct: 154 EKIDALASMAAARQVTVDSEIFEYLLKHWRRDMDSLMMMLDTLDNYAVTMGKRITLPLLR 213 Query: 237 EVLKETQ 243 ++LK+ + Sbjct: 214 QLLKQQE 220 >gi|15676960|ref|NP_274109.1| hypothetical protein NMB1076 [Neisseria meningitidis MC58] gi|254804954|ref|YP_003083175.1| DnaA related protein, truncated [Neisseria meningitidis alpha14] gi|304387630|ref|ZP_07369817.1| DnaA regulatory inactivator Hda [Neisseria meningitidis ATCC 13091] gi|7226316|gb|AAF41471.1| DnaA-related protein [Neisseria meningitidis MC58] gi|254668496|emb|CBA05833.1| DnaA related protein, truncated [Neisseria meningitidis alpha14] gi|261392600|emb|CAX50162.1| DnaA-homolog protein Hda [Neisseria meningitidis 8013] gi|304338355|gb|EFM04478.1| DnaA regulatory inactivator Hda [Neisseria meningitidis ATCC 13091] gi|308389233|gb|ADO31553.1| hypothetical protein NMBB_1213 [Neisseria meningitidis alpha710] gi|316984795|gb|EFV63753.1| dnaA regulatory inactivator Hda [Neisseria meningitidis H44/76] gi|325128199|gb|EGC51087.1| DnaA regulatory inactivator Hda [Neisseria meningitidis N1568] gi|325132068|gb|EGC54764.1| DnaA regulatory inactivator Hda [Neisseria meningitidis M6190] gi|325134243|gb|EGC56891.1| DnaA regulatory inactivator Hda [Neisseria meningitidis M13399] gi|325136375|gb|EGC58983.1| DnaA regulatory inactivator Hda [Neisseria meningitidis M0579] gi|325138001|gb|EGC60574.1| DnaA regulatory inactivator Hda [Neisseria meningitidis ES14902] gi|325140287|gb|EGC62811.1| DnaA regulatory inactivator Hda [Neisseria meningitidis CU385] gi|325142331|gb|EGC64743.1| DnaA regulatory inactivator Hda [Neisseria meningitidis 961-5945] gi|325144711|gb|EGC67008.1| DnaA regulatory inactivator Hda [Neisseria meningitidis M01-240013] gi|325198284|gb|ADY93740.1| DnaA regulatory inactivator Hda [Neisseria meningitidis G2136] gi|325200243|gb|ADY95698.1| DnaA regulatory inactivator Hda [Neisseria meningitidis H44/76] gi|325202167|gb|ADY97621.1| DnaA regulatory inactivator Hda [Neisseria meningitidis M01-240149] gi|325204119|gb|ADY99572.1| DnaA regulatory inactivator Hda [Neisseria meningitidis M01-240355] gi|325206100|gb|ADZ01553.1| DnaA regulatory inactivator Hda [Neisseria meningitidis M04-240196] gi|325208079|gb|ADZ03531.1| DnaA regulatory inactivator Hda [Neisseria meningitidis NZ-05/33] Length = 222 Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust. Identities = 42/187 (22%), Positives = 79/187 (42%), Gaps = 9/187 (4%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI---LIDTRKPVLLEDIDLLD 120 + + + G G+GKS L W +++ A +D+ L D +D ++ Sbjct: 36 GQFIYVWGEEGAGKSHLLQAWV--AQALEAGKNAAYIDAASMPLTDAAFEAEYLAVDQVE 93 Query: 121 --FNDTQ--LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 N+ Q LF I N L+ + V DL +R+ V ++ D Sbjct: 94 KLGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTRMAYCLVYEVKPLTDQ 153 Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236 + M A RQ+ +D ++ Y+++ R + ++D +DN A++ G IT L Sbjct: 154 EKIDALASMAAARQVTVDSEIFEYLLKHWRRDMDSLMMMLDTLDNYAVTMGKRITLPLLR 213 Query: 237 EVLKETQ 243 ++LK+ + Sbjct: 214 QLLKQQE 220 >gi|170698325|ref|ZP_02889400.1| DnaA regulatory inactivator Hda [Burkholderia ambifaria IOP40-10] gi|170136744|gb|EDT04997.1| DnaA regulatory inactivator Hda [Burkholderia ambifaria IOP40-10] Length = 244 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 47/183 (25%), Positives = 78/183 (42%), Gaps = 8/183 (4%) Query: 63 PSRVVILVGPSGSGKS-CLANIWSDKSRS-TRFSNIAKSLDSILIDTRKPVL-LEDIDLL 119 P R + G GSG++ L + SD S R+ L + D R + ++D D + Sbjct: 46 PDRSFYIWGEPGSGRTHLLQALVSDASYGYARYLTPQSPLGAFTFDPRIGIYAIDDCDRM 105 Query: 120 DFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 +DTQ LF++ N + + SS + A DL +RL V +S P D Sbjct: 106 --SDTQQVALFNLFNEVRAHPSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLSPPSDA 163 Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236 V+ +R I + +AAY++ R + L+D +D +L + +T L Sbjct: 164 GKIAVLKLAAKERGIALTDDIAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLR 223 Query: 237 EVL 239 +L Sbjct: 224 RML 226 >gi|170732082|ref|YP_001764029.1| DnaA regulatory inactivator Hda [Burkholderia cenocepacia MC0-3] gi|169815324|gb|ACA89907.1| DnaA regulatory inactivator Hda [Burkholderia cenocepacia MC0-3] Length = 244 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 47/183 (25%), Positives = 78/183 (42%), Gaps = 8/183 (4%) Query: 63 PSRVVILVGPSGSGKS-CLANIWSDKSRS-TRFSNIAKSLDSILIDTRKPVL-LEDIDLL 119 P R + G GSG++ L + SD S R+ L + D R + ++D D + Sbjct: 46 PDRSFYIWGEPGSGRTHLLQALVSDASYGYARYLTPQSPLGAFTFDPRIGIYAIDDCDRM 105 Query: 120 DFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 +DTQ LF++ N + + SS + A DL +RL V +S P D Sbjct: 106 --SDTQQVALFNLFNEVRAHPSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLSPPSDA 163 Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236 V+ +R I + +AAY++ R + L+D +D +L + +T L Sbjct: 164 GKIAVLKLAAKERGIALTDDIAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLR 223 Query: 237 EVL 239 +L Sbjct: 224 RML 226 >gi|171320264|ref|ZP_02909320.1| DnaA regulatory inactivator Hda [Burkholderia ambifaria MEX-5] gi|171094493|gb|EDT39551.1| DnaA regulatory inactivator Hda [Burkholderia ambifaria MEX-5] Length = 244 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 47/183 (25%), Positives = 78/183 (42%), Gaps = 8/183 (4%) Query: 63 PSRVVILVGPSGSGKS-CLANIWSDKSRS-TRFSNIAKSLDSILIDTRKPVL-LEDIDLL 119 P R + G GSG++ L + SD S R+ L + D R + ++D D + Sbjct: 46 PDRSFYIWGEPGSGRTHLLQALVSDASYGYARYLTPQSPLGAFTFDPRIGIYAIDDCDRM 105 Query: 120 DFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 +DTQ LF++ N + + SS + A DL +RL V +S P D Sbjct: 106 --SDTQQVALFNLFNEVRAHPSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLSPPSDA 163 Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236 V+ +R I + +AAY++ R + L+D +D +L + +T L Sbjct: 164 GKIAVLKLAAKERGIALTDDIAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLR 223 Query: 237 EVL 239 +L Sbjct: 224 RML 226 >gi|94323531|gb|ABF17877.1| chromosomal replication initiator protein [Staphylococcus xylosus] Length = 455 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 33/158 (20%), Positives = 71/158 (44%), Gaps = 5/158 (3%) Query: 88 SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTF 147 +++ RF +++D +LID ++ I + + FH N +HQ + +++++ Sbjct: 203 NKTERFREKYRNIDVLLIDD-----IQFIQNKEQTQEEFFHTFNELHQANKQIVISSDRP 257 Query: 148 PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER 207 P L SR + +V I+ PD + ++ K + + I + YI +++ Sbjct: 258 PKEIAKLEDRLRSRFEWGLIVDITPPDYETRMAILQKKIGEENLDIPTEALTYIANQIQS 317 Query: 208 SLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 ++ E + ++ + +G IT L A LK+ Q Sbjct: 318 NIRELEGALTRVLAFSKLQGQPITTELTAAALKDIIQA 355 >gi|172059739|ref|YP_001807391.1| DnaA regulatory inactivator Hda [Burkholderia ambifaria MC40-6] gi|171992256|gb|ACB63175.1| DnaA regulatory inactivator Hda [Burkholderia ambifaria MC40-6] Length = 318 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 45/181 (24%), Positives = 75/181 (41%), Gaps = 4/181 (2%) Query: 63 PSRVVILVGPSGSGKS-CLANIWSDKSRS-TRFSNIAKSLDSILIDTRKPVL-LEDIDLL 119 P R + G GSG++ L + SD S R+ L + D R + ++D D + Sbjct: 120 PDRSFYIWGEPGSGRTHLLQALVSDASYGYARYLTPQSPLGAFTFDPRIGIYAIDDCDRM 179 Query: 120 -DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178 D LF++ N + + SS + A DL +RL V +S P D Sbjct: 180 SDTQQVALFNLFNEVRAHPSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLSPPSDAGK 239 Query: 179 EKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238 V+ +R I + +AAY++ R + L+D +D +L + +T L + Sbjct: 240 IAVLKLAAKERGIALTDDIAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRRM 299 Query: 239 L 239 L Sbjct: 300 L 300 >gi|134294832|ref|YP_001118567.1| DnaA regulatory inactivator Hda [Burkholderia vietnamiensis G4] gi|134137989|gb|ABO53732.1| Chromosomal replication initiator, DnaA [Burkholderia vietnamiensis G4] Length = 244 Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust. Identities = 47/183 (25%), Positives = 78/183 (42%), Gaps = 8/183 (4%) Query: 63 PSRVVILVGPSGSGKS-CLANIWSDKSRS-TRFSNIAKSLDSILIDTRKPVL-LEDIDLL 119 P R + G GSG++ L + SD S R+ L + D R + ++D D + Sbjct: 46 PDRSFYIWGEPGSGRTHLLQALVSDASYGYARYLTPQSPLGAFTFDPRIGIYAIDDCDKM 105 Query: 120 DFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 +DTQ LF++ N + + SS + A DL +RL V +S P D Sbjct: 106 --SDTQQVALFNLFNEVRAHPSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLSPPSDA 163 Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236 V+ +R I + +AAY++ R + L+D +D +L + +T L Sbjct: 164 GKIAVLKLAAKERGIALTDDIAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLR 223 Query: 237 EVL 239 +L Sbjct: 224 RML 226 >gi|240080794|ref|ZP_04725337.1| hypothetical protein NgonF_05711 [Neisseria gonorrhoeae FA19] gi|240117888|ref|ZP_04731950.1| hypothetical protein NgonPID_05407 [Neisseria gonorrhoeae PID1] gi|268596912|ref|ZP_06131079.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268603592|ref|ZP_06137759.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268550700|gb|EEZ45719.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268587723|gb|EEZ52399.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] Length = 222 Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust. Identities = 42/180 (23%), Positives = 76/180 (42%), Gaps = 9/180 (5%) Query: 71 GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI---LIDTRKPVLLEDIDLLD--FNDTQ 125 G G+GKS L W +++ A +D+ L D +D ++ N+ Q Sbjct: 43 GEEGAGKSHLLQAWV--AQALEAGKNAAYIDAASMPLTDAAFEAEYLAVDQVEKLGNEEQ 100 Query: 126 --LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 LF I N L+ + V DL +R+ V ++ D + Sbjct: 101 ALLFSIFNRFRNNGKGFLLLGSEYTPQQLVIREDLRTRMAYCLVYEVKPLTDPEKIDALA 160 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 M A RQ+ +D ++ Y+++ R + ++D +DN A++ G IT L ++LK+ + Sbjct: 161 NMAAARQVTVDSEIFEYLLKHWRRDMDSLMMMLDTLDNYAVTMGKRITLPLLRQLLKQQE 220 >gi|254246245|ref|ZP_04939566.1| hypothetical protein BCPG_00978 [Burkholderia cenocepacia PC184] gi|124871021|gb|EAY62737.1| hypothetical protein BCPG_00978 [Burkholderia cenocepacia PC184] Length = 247 Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust. Identities = 47/183 (25%), Positives = 78/183 (42%), Gaps = 8/183 (4%) Query: 63 PSRVVILVGPSGSGKS-CLANIWSDKSRS-TRFSNIAKSLDSILIDTRKPVL-LEDIDLL 119 P R + G GSG++ L + SD S R+ L + D R + ++D D + Sbjct: 49 PDRSFYIWGEPGSGRTHLLQALVSDASYGYARYLTPQSPLGAFTFDPRIGIYAIDDCDRM 108 Query: 120 DFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 +DTQ LF++ N + + SS + A DL +RL V +S P D Sbjct: 109 --SDTQQVALFNLFNEVRAHPSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLSPPSDA 166 Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236 V+ +R I + +AAY++ R + L+D +D +L + +T L Sbjct: 167 GKIAVLKLAAKERGIALTDDIAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLR 226 Query: 237 EVL 239 +L Sbjct: 227 RML 229 >gi|325106587|ref|YP_004267655.1| Chromosomal replication initiator protein dnaA [Planctomyces brasiliensis DSM 5305] gi|324966855|gb|ADY57633.1| Chromosomal replication initiator protein dnaA [Planctomyces brasiliensis DSM 5305] Length = 568 Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust. Identities = 39/169 (23%), Positives = 72/169 (42%), Gaps = 14/169 (8%) Query: 79 CLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQ 135 AN ++ R + + SI + +L++D+D LD + H I + Sbjct: 296 AFANYYTKALREKSLPSFRRRFRSIDV-----LLVDDVDFLDSKKGIQEEFCHTIQELLA 350 Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195 Y +++ A P DLCSR A V ++ PD+ ++++ + + I Sbjct: 351 YRRQIVLAADRHPRMLTNIRQDLCSRFLAGLVTRLEAPDEQSRQEIVRQQAKKVGLPISP 410 Query: 196 KLAAYIVQRMERS---LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + YI ++ RS L+ A + +L R +G+T + EVLK+ Sbjct: 411 EAVDYISRKFTRSARELLGAVNCLQTYHHLT-GRAIGVTAT--REVLKD 456 >gi|229846871|ref|ZP_04466978.1| DNA replication initiation factor [Haemophilus influenzae 7P49H1] gi|229810360|gb|EEP46079.1| DNA replication initiation factor [Haemophilus influenzae 7P49H1] Length = 231 Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust. Identities = 46/182 (25%), Positives = 86/182 (47%), Gaps = 13/182 (7%) Query: 71 GPSGSGKSCLANIWSD----KSRSTRFSNIAKSL---DSIL--IDTRKPVLLEDIDLLDF 121 G GSGK+ L +S+ K R+ + ++KS ++L ++ ++ V L+D+ + Sbjct: 48 GDKGSGKTHLLRAFSNEYLIKQRTAIYVPLSKSQYFSTAVLENLEQQELVCLDDLQSVIG 107 Query: 122 NDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 ND +F + N I +LL+ +A P + V LPDL SRL + +++ D+ Sbjct: 108 NDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQLNSLTDEQ 167 Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237 KV+ R + + A +++ R+ R + K +D +D +L +T E Sbjct: 168 KIKVLQLAAYQRGFQLSDETANFLITRLARDMHTLFKALDLLDKASLQAQRNLTIPFVKE 227 Query: 238 VL 239 +L Sbjct: 228 IL 229 >gi|107021836|ref|YP_620163.1| DnaA regulatory inactivator Hda [Burkholderia cenocepacia AU 1054] gi|116688783|ref|YP_834406.1| hypothetical protein Bcen2424_0760 [Burkholderia cenocepacia HI2424] gi|105892025|gb|ABF75190.1| Chromosomal replication initiator, DnaA [Burkholderia cenocepacia AU 1054] gi|116646872|gb|ABK07513.1| Chromosomal replication initiator, DnaA [Burkholderia cenocepacia HI2424] Length = 261 Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust. Identities = 47/183 (25%), Positives = 78/183 (42%), Gaps = 8/183 (4%) Query: 63 PSRVVILVGPSGSGKS-CLANIWSDKSRS-TRFSNIAKSLDSILIDTRKPVL-LEDIDLL 119 P R + G GSG++ L + SD S R+ L + D R + ++D D + Sbjct: 63 PDRSFYIWGEPGSGRTHLLQALVSDASYGYARYLTPQSPLGAFTFDPRIGIYAIDDCDRM 122 Query: 120 DFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 +DTQ LF++ N + + SS + A DL +RL V +S P D Sbjct: 123 --SDTQQVALFNLFNEVRAHPSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLSPPSDA 180 Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236 V+ +R I + +AAY++ R + L+D +D +L + +T L Sbjct: 181 GKIAVLKLAAKERGIALTDDIAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLR 240 Query: 237 EVL 239 +L Sbjct: 241 RML 243 >gi|170691341|ref|ZP_02882506.1| DnaA regulatory inactivator Hda [Burkholderia graminis C4D1M] gi|170143546|gb|EDT11709.1| DnaA regulatory inactivator Hda [Burkholderia graminis C4D1M] Length = 247 Score = 43.1 bits (100), Expect = 0.030, Method: Compositional matrix adjust. Identities = 46/188 (24%), Positives = 79/188 (42%), Gaps = 12/188 (6%) Query: 65 RVVILVGPSGSGKSCL--ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID----L 118 R + G +GSG++ L A + RF+ SL + D R V L ID L Sbjct: 47 RTFYIWGEAGSGRTHLLQALVHEAPRGHARFAGPQSSLAAFSFDPR--VALYAIDDCDGL 104 Query: 119 LDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDF 177 +F++ N + + +S L+ P DL +RL V ++ LPD+ Sbjct: 105 SAAQQVAVFNLFNEVRAHPTSALVATGNAPPIGMTVREDLRTRLGWGLVFHLAPLPDEG- 163 Query: 178 LEKVIVKMFA-DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236 + ++K A +R I + + AY++ R + L+D +D +L + +T L Sbjct: 164 -KAAVLKHAARERGIMLADDVPAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLR 222 Query: 237 EVLKETQQ 244 +L Q Sbjct: 223 TMLASPGQ 230 >gi|119713116|gb|ABL97185.1| putative DNA replication factor [uncultured marine bacterium EB0_49D07] Length = 234 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 63/240 (26%), Positives = 101/240 (42%), Gaps = 30/240 (12%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVH-SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 N QL F F S D IE RL D S + +I+ G GSGKS L Sbjct: 2 NNPTQLIFPFQVNQKASFDSFFCSPDNIELMSRLTDLASSENTDELIINGAEGSGKSFLM 61 Query: 82 N-IWSDKSRSTR-----------------FSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123 I ++ S S + F N+A SLD++ ID + +L ++ + Sbjct: 62 QAICNELSSSGKQFAFIPMNKAINMGVEIFQNLA-SLDAVCIDDLQLILSKEEW-----E 115 Query: 124 TQLFHIINSIHQYDSSLLMT-ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 T LF++IN Q SL+++ + LPDL SR+K +K+ D+ L + + Sbjct: 116 TALFNLINQCQQSYCSLILSFGGNQSLEDSTQLPDLLSRIKRMEFMKLQAVLDESLNQAL 175 Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I I+K +++ R LVD + +L + + R + ++KET Sbjct: 176 GFVSQQLDINIEKAEIEFLLNHQTREFSI---LVDNLISLD-KQAASLKRKITIPLIKET 231 >gi|314934960|ref|ZP_07842319.1| DNA replication initiator protein, ATPase [Staphylococcus caprae C87] gi|313652890|gb|EFS16653.1| DNA replication initiator protein, ATPase [Staphylococcus caprae C87] Length = 451 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 39/183 (21%), Positives = 80/183 (43%), Gaps = 7/183 (3%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 PS VI + +I +++ + F +++D +LID ++ I + Sbjct: 176 PSAKVIYTSSEKFTNEFIKSIRDNETEA--FREKYRNIDVLLIDD-----IQFIQNKEQT 228 Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 + FH N +HQ + +++++ P L SR + +V I+ PD + ++ Sbjct: 229 QEEFFHTFNELHQNNKQIVISSDRPPKEIAKLEDRLRSRFEWGLIVDITPPDYETRMAIL 288 Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 K + + I + YI +++ ++ E + ++ + +G IT LAAE LK+ Sbjct: 289 QKKIEEENLDIPPEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPITTELAAEALKDI 348 Query: 243 QQC 245 Q Sbjct: 349 IQA 351 >gi|285016822|ref|YP_003374533.1| chromosomal replication initiator protein DnaA [Xanthomonas albilineans GPE PC73] gi|283472040|emb|CBA14547.1| probable chromosomal replication initiator protein dnaa [Xanthomonas albilineans] Length = 445 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 44/198 (22%), Positives = 82/198 (41%), Gaps = 23/198 (11%) Query: 67 VILVGPSGSGKSCL----ANIWSDKSRSTR---------FSNIAKSLDSILIDTRK---- 109 ++L G +G GK+ L N +++ + R FS + ++L +D K Sbjct: 146 LLLYGSTGLGKTHLMFAAGNAMREQNPNARVMYLRSEQFFSAMIRALQEKTMDQFKRQFQ 205 Query: 110 ---PVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 +L++DI D + FH N++ +++T +P P L SRL Sbjct: 206 QVDALLIDDIQFFAGKDRTQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLA 265 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 V I PD + +++ +R I ++A I ++M ++ E ++ + A Sbjct: 266 WGLSVAIDPPDFETRAAIVLAKARERGAEIPDEVAFLIAKKMRSNVRDLEGALNTLAARA 325 Query: 224 LSRGMGITRSLAAEVLKE 241 G IT A E L++ Sbjct: 326 NFTGRAITTEFAQETLRD 343 >gi|254522116|ref|ZP_05134171.1| DnaA regulatory inactivator Hda [Stenotrophomonas sp. SKA14] gi|219719707|gb|EED38232.1| DnaA regulatory inactivator Hda [Stenotrophomonas sp. SKA14] Length = 235 Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust. Identities = 47/191 (24%), Positives = 85/191 (44%), Gaps = 16/191 (8%) Query: 67 VILVGPSGSGKSCLA-NIWSDKSRSTRF----------SNIAKSLDSILIDTRKPVLLED 115 V L G +G+GK+ A + S ++ R + +LD + ++R+ V L+ Sbjct: 44 VYLEGAAGTGKTHQALAMCSSAEQAGRLPTYVPLASAAGRVRAALDGL--ESRELVALDG 101 Query: 116 IDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +D + ++ LF N ++L TA+ P G+ LPDL SRL V + Sbjct: 102 LDEVAGSREDEIALFDFHNRARAAGVTVLYTAQKAPGELGLLLPDLRSRLGQCVRVLLQP 161 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232 D++ V+ + R + ID+ +++ R L L+D +D +L+ IT Sbjct: 162 LDEEGRAAVLRERALRRGLAIDEAAIEWLLSHTGRELGGLITLLDWLDRESLAAKRRITV 221 Query: 233 SLAAEVLKETQ 243 +VL+E + Sbjct: 222 PFLRQVLEEGR 232 >gi|223043484|ref|ZP_03613530.1| chromosomal replication initiator protein DnaA [Staphylococcus capitis SK14] gi|222443273|gb|EEE49372.1| chromosomal replication initiator protein DnaA [Staphylococcus capitis SK14] Length = 450 Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust. Identities = 39/183 (21%), Positives = 80/183 (43%), Gaps = 7/183 (3%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 PS VI + +I +++ + F +++D +LID ++ I + Sbjct: 176 PSAKVIYTSSEKFTNEFIKSIRDNETEA--FREKYRNIDVLLIDD-----IQFIQNKEQT 228 Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 + FH N +HQ + +++++ P L SR + +V I+ PD + ++ Sbjct: 229 QEEFFHTFNELHQNNKQIVISSDRPPKEIAKLEDRLRSRFEWGLIVDITPPDYETRMAIL 288 Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 K + + I + YI +++ ++ E + ++ + +G IT LAAE LK+ Sbjct: 289 QKKIEEENLDIPPEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPITTELAAEALKDI 348 Query: 243 QQC 245 Q Sbjct: 349 IQA 351 >gi|126668638|ref|ZP_01739590.1| ABC transporter-like protein [Marinobacter sp. ELB17] gi|126626897|gb|EAZ97542.1| ABC transporter-like protein [Marinobacter sp. ELB17] Length = 274 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 43/182 (23%), Positives = 76/182 (41%), Gaps = 13/182 (7%) Query: 69 LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFH 128 ++GP+G+GK+ + +I + K+R S S ++L + + I F +F Sbjct: 62 IIGPNGAGKTTMMDIITGKTRPDTGSVWFGSRHNLLTKSEPEIASLGIGR-KFQKPTVFE 120 Query: 129 IINSIHQYDSSLLMTARTFP----VSWGVC-------LPDLCSR-LKAATVVKISLPDDD 176 + + ++ R P V G C L + R L+AA +S Sbjct: 121 ALTVFENLELAMAADKRVLPTLTAVLNGECRDRIDEVLETIGLRNLRAALAGILSHGQKQ 180 Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236 +LE ++ M R + +D+ +A Q MER+ L K + + MG RS+A Sbjct: 181 WLEIGMLLMQKPRLLLVDEPVAGMTEQEMERTAELLTTLAGKQSVVVVEHDMGFVRSIAR 240 Query: 237 EV 238 +V Sbjct: 241 KV 242 >gi|215404512|ref|ZP_03416693.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis 02_1987] gi|215412336|ref|ZP_03421096.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis 94_M4241A] gi|215446814|ref|ZP_03433566.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis T85] gi|289746356|ref|ZP_06505734.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289758694|ref|ZP_06518072.1| ABC transporter [Mycobacterium tuberculosis T85] gi|294994326|ref|ZP_06800017.1| putative glutamine-transport ATP-binding protein ABC transporter [Mycobacterium tuberculosis 210] gi|298526037|ref|ZP_07013446.1| ABC transporter, ATP-binding protein [Mycobacterium tuberculosis 94_M4241A] gi|289686884|gb|EFD54372.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289714258|gb|EFD78270.1| ABC transporter [Mycobacterium tuberculosis T85] gi|298495831|gb|EFI31125.1| ABC transporter, ATP-binding protein [Mycobacterium tuberculosis 94_M4241A] gi|326904178|gb|EGE51111.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis W-148] Length = 330 Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 7/67 (10%) Query: 37 GISRDDLLV-HSAIEQAVRLID--SWPSWPSRVVILVGPSGSGK----SCLANIWSDKSR 89 G++ DL+V +S+ AVR ID S P +VIL+GPSG GK SCL I KS Sbjct: 3 GLTISDLVVEYSSGGYAVRPIDGLSLDVAPGSLVILLGPSGCGKTTLLSCLGGILRPKSG 62 Query: 90 STRFSNI 96 S +F ++ Sbjct: 63 SIKFDDV 69 >gi|15609701|ref|NP_217080.1| glutamine-transport ATP-binding protein ABC transporter GlnQ [Mycobacterium tuberculosis H37Rv] gi|15842102|ref|NP_337139.1| ABC transporter, ATP-binding protein [Mycobacterium tuberculosis CDC1551] gi|31793746|ref|NP_856239.1| glutamine-transport ATP-binding protein ABC transporter GlnQ [Mycobacterium bovis AF2122/97] gi|121638448|ref|YP_978672.1| putative glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662403|ref|YP_001283926.1| glutamine ABC transporter ATP-binding protein GlnQ [Mycobacterium tuberculosis H37Ra] gi|148823759|ref|YP_001288513.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis F11] gi|167968826|ref|ZP_02551103.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis H37Ra] gi|215431521|ref|ZP_03429440.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis EAS054] gi|219558567|ref|ZP_03537643.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis T17] gi|224990942|ref|YP_002645629.1| putative glutamine-transport ATP-binding protein ABC transporter [Mycobacterium bovis BCG str. Tokyo 172] gi|254232683|ref|ZP_04926010.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis C] gi|254366767|ref|ZP_04982810.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis str. Haarlem] gi|254551614|ref|ZP_05142061.1| putative glutamine-transport ATP-binding protein ABC transporter [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260187578|ref|ZP_05765052.1| putative glutamine-transport ATP-binding protein ABC transporter [Mycobacterium tuberculosis CPHL_A] gi|260201691|ref|ZP_05769182.1| putative glutamine-transport ATP-binding protein ABC transporter [Mycobacterium tuberculosis T46] gi|260205885|ref|ZP_05773376.1| putative glutamine-transport ATP-binding protein ABC transporter [Mycobacterium tuberculosis K85] gi|289444100|ref|ZP_06433844.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis T46] gi|289448213|ref|ZP_06437957.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis CPHL_A] gi|289570733|ref|ZP_06450960.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis T17] gi|289575272|ref|ZP_06455499.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis K85] gi|289754682|ref|ZP_06514060.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis EAS054] gi|306776838|ref|ZP_07415175.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis SUMu001] gi|306780602|ref|ZP_07418939.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis SUMu002] gi|306785365|ref|ZP_07423687.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis SUMu003] gi|306789965|ref|ZP_07428287.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis SUMu004] gi|306794045|ref|ZP_07432347.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis SUMu005] gi|306798444|ref|ZP_07436746.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis SUMu006] gi|306804323|ref|ZP_07440991.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis SUMu008] gi|306807638|ref|ZP_07444306.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis SUMu007] gi|306969839|ref|ZP_07482500.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis SUMu009] gi|306972952|ref|ZP_07485613.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis SUMu010] gi|307080663|ref|ZP_07489833.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis SUMu011] gi|307085250|ref|ZP_07494363.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis SUMu012] gi|54040539|sp|P63402|Y2593_MYCBO RecName: Full=Uncharacterized ABC transporter ATP-binding protein Mb2593 gi|54042820|sp|P63401|Y2564_MYCTU RecName: Full=Uncharacterized ABC transporter ATP-binding protein Rv2564/MT2640 gi|1460076|emb|CAB01051.1| PROBABLE GLUTAMINE-TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER GLNQ [Mycobacterium tuberculosis H37Rv] gi|13882384|gb|AAK46953.1| ABC transporter, ATP-binding protein [Mycobacterium tuberculosis CDC1551] gi|31619340|emb|CAD94778.1| PROBABLE GLUTAMINE-TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER GLNQ [Mycobacterium bovis AF2122/97] gi|121494096|emb|CAL72574.1| Probable glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124601742|gb|EAY60752.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis C] gi|134152278|gb|EBA44323.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis str. Haarlem] gi|148506555|gb|ABQ74364.1| glutamine ABC transporter ATP-binding protein GlnQ [Mycobacterium tuberculosis H37Ra] gi|148722286|gb|ABR06911.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis F11] gi|224774055|dbj|BAH26861.1| putative glutamine-transport ATP-binding protein ABC transporter [Mycobacterium bovis BCG str. Tokyo 172] gi|289417019|gb|EFD14259.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis T46] gi|289421171|gb|EFD18372.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis CPHL_A] gi|289539703|gb|EFD44281.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis K85] gi|289544487|gb|EFD48135.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis T17] gi|289695269|gb|EFD62698.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis EAS054] gi|308214764|gb|EFO74163.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis SUMu001] gi|308326537|gb|EFP15388.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis SUMu002] gi|308329958|gb|EFP18809.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis SUMu003] gi|308333575|gb|EFP22426.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis SUMu004] gi|308337602|gb|EFP26453.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis SUMu005] gi|308341268|gb|EFP30119.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis SUMu006] gi|308345959|gb|EFP34810.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis SUMu007] gi|308349075|gb|EFP37926.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis SUMu008] gi|308352648|gb|EFP41499.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis SUMu009] gi|308357643|gb|EFP46494.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis SUMu010] gi|308361585|gb|EFP50436.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis SUMu011] gi|308365204|gb|EFP54055.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis SUMu012] gi|323718837|gb|EGB27993.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis CDC1551A] Length = 330 Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 7/67 (10%) Query: 37 GISRDDLLV-HSAIEQAVRLID--SWPSWPSRVVILVGPSGSGK----SCLANIWSDKSR 89 G++ DL+V +S+ AVR ID S P +VIL+GPSG GK SCL I KS Sbjct: 3 GLTISDLVVEYSSGGYAVRPIDGLSLDVAPGSLVILLGPSGCGKTTLLSCLGGILRPKSG 62 Query: 90 STRFSNI 96 S +F ++ Sbjct: 63 SIKFDDV 69 >gi|253798355|ref|YP_003031356.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis KZN 1435] gi|289553646|ref|ZP_06442856.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis KZN 605] gi|297635174|ref|ZP_06952954.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis KZN 4207] gi|297732166|ref|ZP_06961284.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis KZN R506] gi|313659500|ref|ZP_07816380.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis KZN V2475] gi|253319858|gb|ACT24461.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis KZN 1435] gi|289438278|gb|EFD20771.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis KZN 605] gi|328458125|gb|AEB03548.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis KZN 4207] Length = 330 Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 7/67 (10%) Query: 37 GISRDDLLV-HSAIEQAVRLID--SWPSWPSRVVILVGPSGSGK----SCLANIWSDKSR 89 G++ DL+V +S+ AVR ID S P +VIL+GPSG GK SCL I KS Sbjct: 3 GLTISDLVVEYSSGGYAVRPIDGLSLDVAPGSLVILLGPSGCGKTTLLSCLGGILRPKSG 62 Query: 90 STRFSNI 96 S +F ++ Sbjct: 63 SIKFDDV 69 >gi|160872042|ref|ZP_02062174.1| chromosomal replication initiator protein DnaA [Rickettsiella grylli] gi|159120841|gb|EDP46179.1| chromosomal replication initiator protein DnaA [Rickettsiella grylli] Length = 464 Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust. Identities = 34/152 (22%), Positives = 68/152 (44%), Gaps = 11/152 (7%) Query: 93 FSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPV 149 F +SLD++LID DI D + + FH N++ + +++T +P Sbjct: 219 FKTYYRSLDALLID--------DIQFFAGKDRSQEEFFHTFNTLLESQQQIVLTCDRYPK 270 Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209 L SRL + I PD + +++ +I + +++A +I +R+ ++ Sbjct: 271 EMSGVEERLKSRLGWGLTIAIEPPDLETRVAILISKAEQTKISLPQEVAFFIAKRIHSNV 330 Query: 210 VFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 E ++ ++ A G+ IT L E +K+ Sbjct: 331 RELEGVLKRVVAYAQFTGLQITLELVREAIKD 362 >gi|304321315|ref|YP_003854958.1| hypothetical protein PB2503_08804 [Parvularcula bermudensis HTCC2503] gi|303300217|gb|ADM09816.1| hypothetical protein PB2503_08804 [Parvularcula bermudensis HTCC2503] Length = 230 Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust. Identities = 48/189 (25%), Positives = 78/189 (41%), Gaps = 15/189 (7%) Query: 66 VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-VLLEDIDLLDFNDT 124 + +L G G GKS LA + + +T + +L + + P V+++D D Sbjct: 49 LAVLWGGYGVGKSRLAAEFGRRVGATFLAG--PTLSGLPPRSALPLVVIDDADQASLG-- 104 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWG-----VCLPDLCSRLKAATVVKISLPDDDFLE 179 LF +N+ L+ R+ P WG + DL SRL TV+++ P+ + Sbjct: 105 ALFAYVNAALSRPQPTLVIGRSRPGRWGGGEDETGVQDLRSRLMGGTVIELDPPEQTAII 164 Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT-RSLAAEV 238 +V+ D + + L R+ R V + LA G G T RSL + Sbjct: 165 QVLAIALRDAGLTVPPALIEETGGRLCRRFVAPLTIAATARRLA---GPGKTPRSLLEQA 221 Query: 239 LKET-QQCD 246 LK +QC Sbjct: 222 LKSNPEQCG 230 >gi|307544884|ref|YP_003897363.1| K10763 DnaA-homolog protein [Halomonas elongata DSM 2581] gi|307216908|emb|CBV42178.1| K10763 DnaA-homolog protein [Halomonas elongata DSM 2581] Length = 233 Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust. Identities = 27/103 (26%), Positives = 46/103 (44%) Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 + LFH N + L++ A P V LPDL SRL ++ DD + + Sbjct: 115 EEALFHAFNRLRDDGRRLIVAASAPPRQLAVTLPDLASRLTWGMTFQVPGLDDQGRLEAL 174 Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 R + + ++A YI+ R R L ++++ +D +LS Sbjct: 175 RLRAGGRGMELPDEVARYILHRGPRRLEALFEVLETLDRASLS 217 >gi|215427959|ref|ZP_03425878.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis T92] gi|289751183|ref|ZP_06510561.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis T92] gi|289691770|gb|EFD59199.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis T92] Length = 227 Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 7/67 (10%) Query: 37 GISRDDLLV-HSAIEQAVRLID--SWPSWPSRVVILVGPSGSGK----SCLANIWSDKSR 89 G++ DL+V +S+ AVR ID S P +VIL+GPSG GK SCL I KS Sbjct: 3 GLTISDLVVEYSSGGYAVRPIDGLSLDVAPGSLVILLGPSGCGKTTLLSCLGGILRPKSG 62 Query: 90 STRFSNI 96 S +F ++ Sbjct: 63 SIKFDDV 69 >gi|212635540|ref|YP_002312065.1| DNA replication initiation factor [Shewanella piezotolerans WP3] gi|212557024|gb|ACJ29478.1| DNA replication factor, putative [Shewanella piezotolerans WP3] Length = 236 Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust. Identities = 45/193 (23%), Positives = 86/193 (44%), Gaps = 23/193 (11%) Query: 66 VVILVGPSGSGKSCLANIW----SDKSRSTRFS--NIAKSLDSILIDTRKPVLLEDIDLL 119 V + GP SG++ L + +D +RS+ + I S+ L++ LE IDL+ Sbjct: 48 AVFIWGPEKSGRTHLMHAACAHANDLNRSSFYIPLGIHASISPALLEG-----LEKIDLV 102 Query: 120 DFNDTQ-----------LFHIINSI-HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 +D +F + N I Q SL+++A P G LPDL SR++ Sbjct: 103 CIDDVNAIAGHPLWEEAIFDLYNRISEQKTCSLVLSASVSPSETGFALPDLISRMQWGLN 162 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 ++ DD + + A R + + + + +++ R+ R L ++D++D ++ Sbjct: 163 YQLQPMADDEKLAALQRRAAMRGLQLSEDVGRFLLNRLARDLRTLFDVLDRLDKASMVHQ 222 Query: 228 MGITRSLAAEVLK 240 +T E+L+ Sbjct: 223 RKLTIPFIKEMLR 235 >gi|88799318|ref|ZP_01114896.1| hypothetical protein MED297_16968 [Reinekea sp. MED297] gi|88777857|gb|EAR09054.1| hypothetical protein MED297_16968 [Reinekea sp. MED297] Length = 235 Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust. Identities = 36/139 (25%), Positives = 68/139 (48%), Gaps = 5/139 (3%) Query: 105 IDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161 +D V L+DIDL+ + +FH N + L++ AR P+ + L DL SR Sbjct: 96 LDQLHAVALDDIDLIAADAHWQEAVFHFYNRMRDSGRHLMVGARCSPLQLPLTLADLKSR 155 Query: 162 LKAA-TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 L + T+ + + D++ + VI K R + I + +A +++ R +++ D++D Sbjct: 156 LSSGLTISLLPMTDEERVTWVIWKG-RRRGLVIGRDVAEFLITRHNQNMKELVTTFDRLD 214 Query: 221 NLALSRGMGITRSLAAEVL 239 + +L+ IT +VL Sbjct: 215 SASLAEKRKITIPFLKQVL 233 >gi|295675601|ref|YP_003604125.1| DnaA regulatory inactivator Hda [Burkholderia sp. CCGE1002] gi|295435444|gb|ADG14614.1| DnaA regulatory inactivator Hda [Burkholderia sp. CCGE1002] Length = 250 Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust. Identities = 40/174 (22%), Positives = 73/174 (41%), Gaps = 4/174 (2%) Query: 65 RVVILVGPSGSGKSCL--ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL-LEDIDLLDF 121 R + G +GSG++ L A + RF+ SL + D R + ++D D L Sbjct: 47 RTFYIWGEAGSGRTHLLQALVHEAPPGHARFAGPQSSLAAFSFDPRVALYAIDDCDALSA 106 Query: 122 -NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 +F++ N + + +S L+ A DL +RL V ++ DD Sbjct: 107 AQQIAVFNLFNEVRAHPTSALVAAGNAAPIGMTVREDLRTRLGWGLVFHLAPLPDDAKAA 166 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234 V+ + +R I + + AY++ R + L+D +D +L + +T L Sbjct: 167 VLKRAARERGIMLADDVPAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPL 220 >gi|212715149|ref|ZP_03323277.1| hypothetical protein BIFCAT_00035 [Bifidobacterium catenulatum DSM 16992] gi|212661830|gb|EEB22405.1| hypothetical protein BIFCAT_00035 [Bifidobacterium catenulatum DSM 16992] Length = 491 Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust. Identities = 40/168 (23%), Positives = 71/168 (42%), Gaps = 17/168 (10%) Query: 79 CLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQ 135 L + + + F+ + +D +LID DI L D Q FH N++HQ Sbjct: 230 ALGDTNQNSGQIKEFNRRYREVDVLLID--------DIQFLSGKDATLEQFFHTFNTLHQ 281 Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK--VIVKMFADRQIFI 193 + +++ + P L SR ++ V + PD LE I++M A Sbjct: 282 ANKRIVIASDVPPKDLQGFNERLISRFESGLTVDVKPPD---LETRIAILRMIAHESNVQ 338 Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 D L I +R ++ E ++++ +A G +TR+LA L++ Sbjct: 339 DDVL-NLIAERFTENIRELEGALNRVTAMASLSGQPVTRALAEHTLQD 385 >gi|126667545|ref|ZP_01738515.1| DNA replication initiation factor [Marinobacter sp. ELB17] gi|126627971|gb|EAZ98598.1| DNA replication initiation factor [Marinobacter sp. ELB17] Length = 238 Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust. Identities = 37/168 (22%), Positives = 73/168 (43%), Gaps = 12/168 (7%) Query: 69 LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLL 119 L G S +GKS L + S S + S+ + ++ V L+D+D + Sbjct: 54 LCGDSDTGKSHLLQALCHYAESQSLSAVCISITELGPFGPDALTGLEQFNLVCLDDLDSV 113 Query: 120 DFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 + +FH+ N + L+++ P S LPDL SRL +++ + D Sbjct: 114 VGQTGWEEAVFHLYNRMLDAGHQLVVSLSDVPASLPFILPDLSSRLSHGLTLQLGIYRDS 173 Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 +++++ R + + +A +I++R R L ++D +D +L Sbjct: 174 DRKRILMARVEQRGLVMADDVAGFILRRAPRRLGELLAILDSLDENSL 221 >gi|27904525|ref|NP_777651.1| chromosomal replication initiator protein DnaA [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|29839271|sp|P59567|DNAA_BUCBP RecName: Full=Chromosomal replication initiator protein DnaA gi|27903922|gb|AAO26756.1| chromosomal replication initiator protein DnaA [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 457 Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust. Identities = 35/152 (23%), Positives = 73/152 (48%), Gaps = 11/152 (7%) Query: 93 FSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPV 149 F +S++++LID DI + + +LFH IN++ + +++T+ FP Sbjct: 212 FKKYYRSVNTLLID--------DIQFFAYKKHSQEELFHTINALLNRNQQIIITSDQFPQ 263 Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209 L SR + ++I PD + K+++K I + K+A +I + ++ ++ Sbjct: 264 KIHGIETRLKSRFECGLTIRIDPPDLNTRTKILIKKSHIYDINLSYKVAFFIAKNLKSNI 323 Query: 210 VFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 E ++K+ + S+ IT + A + L+E Sbjct: 324 RELEGALNKILANSDSKKKIITINFAYKTLQE 355 >gi|145633314|ref|ZP_01789045.1| DNA replication initiation factor [Haemophilus influenzae 3655] gi|144986160|gb|EDJ92750.1| DNA replication initiation factor [Haemophilus influenzae 3655] Length = 231 Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust. Identities = 44/182 (24%), Positives = 86/182 (47%), Gaps = 13/182 (7%) Query: 71 GPSGSGKSCLANIWSD----KSRSTRFSNIAKSL---DSIL--IDTRKPVLLEDIDLLDF 121 G GSGK+ L +S+ K R+ + ++KS ++L ++ ++ V L+D+ + Sbjct: 48 GDKGSGKTHLLRAFSNEYLIKQRTAIYVPLSKSQYFSTAVLENLEQQELVCLDDLQSVIG 107 Query: 122 NDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 ND +F + N I +LL+ +A P + V LPDL SRL + +++ D+ Sbjct: 108 NDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQLNSLTDEQ 167 Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237 +V+ R + + A +++ R+ R + + +D +D +L +T E Sbjct: 168 KVEVLQHTAYQRGFQLSDETANFLITRLARDMHTLFEALDLLDKASLQAQRNLTIPFVKE 227 Query: 238 VL 239 +L Sbjct: 228 IL 229 >gi|209520580|ref|ZP_03269335.1| DnaA regulatory inactivator Hda [Burkholderia sp. H160] gi|209498973|gb|EDZ99073.1| DnaA regulatory inactivator Hda [Burkholderia sp. H160] Length = 250 Score = 42.0 bits (97), Expect = 0.068, Method: Compositional matrix adjust. Identities = 40/174 (22%), Positives = 73/174 (41%), Gaps = 4/174 (2%) Query: 65 RVVILVGPSGSGKSCL--ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL-LEDIDLLDF 121 R + G +GSG++ L A + RF+ SL + D R + ++D D L Sbjct: 47 RTFYVWGEAGSGRTHLLQALVHEAPPGHARFAGPQSSLAAFGFDPRVALYAIDDCDALSA 106 Query: 122 -NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 +F++ N + + +S L+ A DL +RL V ++ DD Sbjct: 107 AQQIAVFNLFNEVRAHPTSALVAAGNAAPIGMTVREDLRTRLGWGLVFHLAPLPDDAKAA 166 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234 V+ + +R I + + AY++ R + L+D +D +L + +T L Sbjct: 167 VLKRAARERGIMLADDVPAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPL 220 >gi|170726517|ref|YP_001760543.1| DNA replication initiation factor [Shewanella woodyi ATCC 51908] gi|169811864|gb|ACA86448.1| DnaA regulatory inactivator Hda [Shewanella woodyi ATCC 51908] Length = 236 Score = 42.0 bits (97), Expect = 0.069, Method: Compositional matrix adjust. Identities = 44/194 (22%), Positives = 89/194 (45%), Gaps = 23/194 (11%) Query: 65 RVVILVGPSGSGKSCLANIW----SDKSRSTRFS--NIAKSLDSILIDTRKPVLLEDIDL 118 R V L GP SG++ L + +D RS+ + I S+ + L++ LE +DL Sbjct: 47 RSVYLWGPVKSGRTHLMHAACAHANDLQRSSFYLPLGIHASISTALLEG-----LESLDL 101 Query: 119 LDFNDT-----------QLFHIINSIHQY-DSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 + +D +F + N + ++ + SL+++A P G LPDL SR++ Sbjct: 102 ICIDDVDAIAGHPLWEEAIFDLYNRVSEHKNCSLIVSASVSPNDSGFTLPDLISRMQWGL 161 Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 ++ D+ + + A R + + + + +++ R+ R L ++D++D +L Sbjct: 162 NYQLQPMADEEKLAALQRRAAMRGLQLPEDVGRFLLNRLARDLRTLFDVLDRLDKASLVH 221 Query: 227 GMGITRSLAAEVLK 240 +T E+L+ Sbjct: 222 QRKLTIPFVKEMLR 235 >gi|119356612|ref|YP_911256.1| IstB ATP binding domain-containing protein [Chlorobium phaeobacteroides DSM 266] gi|119353961|gb|ABL64832.1| IstB domain protein ATP-binding protein [Chlorobium phaeobacteroides DSM 266] Length = 175 Score = 42.0 bits (97), Expect = 0.071, Method: Compositional matrix adjust. Identities = 32/127 (25%), Positives = 59/127 (46%), Gaps = 27/127 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI-------------------LIDT 107 + L+GPSG+GKS LA ++ + + + +++D + ++ Sbjct: 11 LTLIGPSGTGKSYLAGGLCHEALNLGYHELFRTMDELIHTIRLKEVTTAAAREFKRIMHA 70 Query: 108 RKPVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164 R PV +EDI +L +T LF ++N +H+ +S ++T P W L L L Sbjct: 71 RLPV-IEDIMMLPLENTVAVGLFQLVNQLHE-QASFIITTNKSPKDWAEMLDRL---LYK 125 Query: 165 ATVVKIS 171 V+K++ Sbjct: 126 CEVIKLT 132 >gi|332306898|ref|YP_004434749.1| DnaA regulatory inactivator Hda [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174227|gb|AEE23481.1| DnaA regulatory inactivator Hda [Glaciecola agarilytica 4H-3-7+YE-5] Length = 237 Score = 42.0 bits (97), Expect = 0.072, Method: Compositional matrix adjust. Identities = 43/184 (23%), Positives = 80/184 (43%), Gaps = 17/184 (9%) Query: 71 GPSGSGKSCLANIWSDKSRSTRFSNIAKS-----------LDSILIDTRKPVLLEDIDLL 119 G G GKS L K++S + + S LD + + + + L+D+D L Sbjct: 53 GEHGVGKSHLLYSLCHKAQSANVTAVYLSFKEKQQYSPEVLDGL--EHSQLICLDDVDAL 110 Query: 120 DFNDT---QLFHIINSIHQYD-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 + T +F ++N + + S ++ A P+S + L DL SRL ++ D Sbjct: 111 QDSQTWQIAVFDLLNRVKELGISHVVACANGGPMSLNLQLADLASRLAWGVSFTLASLSD 170 Query: 176 DFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235 + ++ R + + +K+A Y+V +R + +DK+D L+L + +T Sbjct: 171 EGRCVALLTRAKQRGLVMPEKVAVYLVNHWQRDMPSLMNTLDKLDQLSLQQQRKLTIPFV 230 Query: 236 AEVL 239 E L Sbjct: 231 KEAL 234 >gi|145634445|ref|ZP_01790155.1| DNA replication initiation factor [Haemophilus influenzae PittAA] gi|145268425|gb|EDK08419.1| DNA replication initiation factor [Haemophilus influenzae PittAA] Length = 231 Score = 42.0 bits (97), Expect = 0.073, Method: Compositional matrix adjust. Identities = 44/182 (24%), Positives = 86/182 (47%), Gaps = 13/182 (7%) Query: 71 GPSGSGKSCLANIWSD----KSRSTRFSNIAKSL---DSIL--IDTRKPVLLEDIDLLDF 121 G GSGK+ L +S+ K R+ + ++KS ++L ++ ++ V L+D+ + Sbjct: 48 GDKGSGKTHLLRAFSNEYLIKQRTAIYVPLSKSQYFSTAVLENLEQQELVCLDDLQSVIG 107 Query: 122 NDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 ND +F + N I +LL+ +A P + V LPDL SRL + +++ D+ Sbjct: 108 NDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQLNSLTDEQ 167 Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237 +V+ R + + A +++ R+ R + + +D +D +L +T E Sbjct: 168 KVEVLQHTAYQRGFQLSDETANFLITRLARDMHTLFEALDLLDKASLQAQRNLTIPFVKE 227 Query: 238 VL 239 +L Sbjct: 228 IL 229 >gi|313885387|ref|ZP_07819137.1| chromosomal replication initiator protein DnaA [Eremococcus coleocola ACS-139-V-Col8] gi|312619117|gb|EFR30556.1| chromosomal replication initiator protein DnaA [Eremococcus coleocola ACS-139-V-Col8] Length = 449 Score = 42.0 bits (97), Expect = 0.074, Method: Compositional matrix adjust. Identities = 35/143 (24%), Positives = 65/143 (45%), Gaps = 7/143 (4%) Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 +L++DI L D + FH N+++ +++T+ P + L SR K Sbjct: 213 LLIDDIQFLSNKDKTQEEFFHTFNALYNNGKQIVLTSDRLPNNITNLEERLISRFKWGLS 272 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 I+ PD + ++ K + + I+ + YI ++ ++ E + ++ A +G Sbjct: 273 TDITPPDLETRIAILRKKASTDNLDINSETLTYIASHIDSNIRELEGALVRVIAYAAIKG 332 Query: 228 MGITRSLAAEVLK----ETQQCD 246 + IT LAAE LK + QQ D Sbjct: 333 LDITTDLAAEALKNIVDDNQQND 355 >gi|225352379|ref|ZP_03743402.1| hypothetical protein BIFPSEUDO_03996 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225156886|gb|EEG70255.1| hypothetical protein BIFPSEUDO_03996 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 530 Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust. Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 9/136 (6%) Query: 111 VLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 +L++DI L D Q FH N++HQ + +++ + P L SR ++ Sbjct: 293 LLIDDIQFLSGKDATLEQFFHTFNTLHQANKRIVIASDVPPKDLQGFNERLISRFESGLT 352 Query: 168 VKISLPDDDFLEK--VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 V + PD LE I++M A D L I +R ++ E ++++ +A Sbjct: 353 VDVKPPD---LETRIAILRMIAHGTNVQDDVL-NLIAERFTENIRELEGALNRVTAMASL 408 Query: 226 RGMGITRSLAAEVLKE 241 G +TR+LA + L++ Sbjct: 409 SGQPVTRALAEQTLQD 424 >gi|315634909|ref|ZP_07890191.1| DnaA regulatory inactivator Hda [Aggregatibacter segnis ATCC 33393] gi|315476461|gb|EFU67211.1| DnaA regulatory inactivator Hda [Aggregatibacter segnis ATCC 33393] Length = 234 Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust. Identities = 31/116 (26%), Positives = 60/116 (51%), Gaps = 3/116 (2%) Query: 126 LFHIINSIHQYDSSLL-MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 +F +IN I + +LL ++A P + LPDL SRL V ++ +P +D + +++ Sbjct: 118 IFDLINRIRETGKTLLVISADQSPTNLSAHLPDLASRLTWGEVYQL-MPLNDQQKITVLQ 176 Query: 185 MFA-DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + A R I + + A ++ +R+ER + ++K+D +L +T E+L Sbjct: 177 LAAHQRGIELPDETANFLFKRLERDMKTLFNALEKLDQASLQAQRKLTIPFVKEIL 232 >gi|329893747|ref|ZP_08269835.1| Chromosomal replication initiator, DnaA [gamma proteobacterium IMCC3088] gi|328923470|gb|EGG30784.1| Chromosomal replication initiator, DnaA [gamma proteobacterium IMCC3088] Length = 237 Score = 42.0 bits (97), Expect = 0.082, Method: Compositional matrix adjust. Identities = 43/196 (21%), Positives = 83/196 (42%), Gaps = 28/196 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRF----SNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 + L G +GK+ L + + T + S D ++D LE D L F+ Sbjct: 42 IWLTGAYSTGKTHLLSALVCANDQTALYLPADELIASCDPTMLDG-----LEATDCLVFD 96 Query: 123 D-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 D LFH+ N H + +++ P L DL SR +++ Sbjct: 97 DIDKLAHTPAWSEALFHLFNRHHAQGGRWVCSSQVAPRYVDTPLADLRSRFTLFPAFELA 156 Query: 172 LPDDDFLEKVIVKMFADRQIF----IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 ++ ++ VK+F++R F +++ + YI + R L + +L+D++D +L+ Sbjct: 157 ----NYNDQERVKIFSERARFRGIKVNEDVYPYITNHLPRDLKYWLQLLDQLDQASLAEQ 212 Query: 228 MGITRSLAAEVLKETQ 243 +T L VL++ + Sbjct: 213 RKVTIPLVKSVLQQNE 228 >gi|78065321|ref|YP_368090.1| hypothetical protein Bcep18194_A3847 [Burkholderia sp. 383] gi|206561601|ref|YP_002232366.1| DnaA regulatory inactivator Hda [Burkholderia cenocepacia J2315] gi|77966066|gb|ABB07446.1| DNA replication initiation-like ATPase [Burkholderia sp. 383] gi|198037643|emb|CAR53586.1| DnaA-homolog protein Hda [Burkholderia cenocepacia J2315] Length = 244 Score = 42.0 bits (97), Expect = 0.083, Method: Compositional matrix adjust. Identities = 46/183 (25%), Positives = 77/183 (42%), Gaps = 8/183 (4%) Query: 63 PSRVVILVGPSGSGKS-CLANIWSDKSRS-TRFSNIAKSLDSILIDTRKPVL-LEDIDLL 119 P R + G G G++ L + SD S R+ L + D R + ++D D + Sbjct: 46 PDRSFYIWGEPGCGRTHLLQALVSDASYGYARYLTPQSPLGAFTFDPRIGIYAIDDCDRM 105 Query: 120 DFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 +DTQ LF++ N + + SS + A DL +RL V +S P D Sbjct: 106 --SDTQQVALFNLFNEVRAHPSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLSPPSDA 163 Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236 V+ +R I + +AAY++ R + L+D +D +L + +T L Sbjct: 164 GKIAVLKLAAKERGIALTDDIAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLR 223 Query: 237 EVL 239 +L Sbjct: 224 RML 226 >gi|90020543|ref|YP_526370.1| regulatory inactivation of DnaA Hda protein [Saccharophagus degradans 2-40] gi|89950143|gb|ABD80158.1| regulatory inactivation of DnaA Hda protein [Saccharophagus degradans 2-40] Length = 239 Score = 42.0 bits (97), Expect = 0.086, Method: Compositional matrix adjust. Identities = 28/115 (24%), Positives = 56/115 (48%) Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 +FH+ N++ LL+ + T P + + LPDL SR+ + + +D + ++ Sbjct: 124 VFHLYNNLRDAGHRLLIASHTSPPALPLTLPDLKSRVLGSVRYHVESLNDLQKQDALIAR 183 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 R + + ++A +I+ R R L+D++D+ +L + +T A EVL Sbjct: 184 AVARGMDMPVEVARFILNRASRDTNELFYLLDQLDDASLQKQRKLTVPFAKEVLN 238 >gi|90417462|ref|ZP_01225385.1| DnaA family protein [marine gamma proteobacterium HTCC2207] gi|90330703|gb|EAS45982.1| DnaA family protein [marine gamma proteobacterium HTCC2207] Length = 234 Score = 41.6 bits (96), Expect = 0.088, Method: Compositional matrix adjust. Identities = 28/114 (24%), Positives = 56/114 (49%) Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 LF+ N + + LL+TA T P V L DL SRLK+ +++ D L +++ Sbjct: 119 LFNFFNRCSESGTRLLITAHTLPDYLEVLLDDLLSRLKSGISLQLMDYKDADLRRLLQHR 178 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + +++ ++A +++ R+ R+ ++K+D ++L +T VL Sbjct: 179 ASGLGLYLSDEVARFLLHRLPRNSHLLMDALEKLDAVSLREQRRLTLPFVKTVL 232 >gi|126174013|ref|YP_001050162.1| DNA replication initiation factor [Shewanella baltica OS155] gi|153000304|ref|YP_001365985.1| DNA replication initiation factor [Shewanella baltica OS185] gi|160874938|ref|YP_001554254.1| DNA replication initiation factor [Shewanella baltica OS195] gi|217973665|ref|YP_002358416.1| DNA replication initiation factor [Shewanella baltica OS223] gi|304411437|ref|ZP_07393051.1| DnaA regulatory inactivator Hda [Shewanella baltica OS183] gi|307305241|ref|ZP_07584989.1| DnaA regulatory inactivator Hda [Shewanella baltica BA175] gi|125997218|gb|ABN61293.1| regulatory inactivation of DnaA Hda protein [Shewanella baltica OS155] gi|151364922|gb|ABS07922.1| Chromosomal replication initiator DnaA [Shewanella baltica OS185] gi|160860460|gb|ABX48994.1| DnaA regulatory inactivator Hda [Shewanella baltica OS195] gi|217498800|gb|ACK46993.1| DnaA regulatory inactivator Hda [Shewanella baltica OS223] gi|304350292|gb|EFM14696.1| DnaA regulatory inactivator Hda [Shewanella baltica OS183] gi|306911544|gb|EFN41969.1| DnaA regulatory inactivator Hda [Shewanella baltica BA175] gi|315267174|gb|ADT94027.1| DnaA regulatory inactivator Hda [Shewanella baltica OS678] Length = 236 Score = 41.6 bits (96), Expect = 0.090, Method: Compositional matrix adjust. Identities = 41/188 (21%), Positives = 88/188 (46%), Gaps = 13/188 (6%) Query: 66 VVILVGPSGSGKSCL---ANIWSDKSRSTRFS---NIAKSLDSILIDTRKP---VLLEDI 116 + L GP SG++ L A +++ F I S+ + L++ + V ++D+ Sbjct: 48 AIYLWGPVKSGRTHLMHAACAHANEVERRSFYIPLGIHASISTALLEGLEQLDLVCIDDV 107 Query: 117 DLLDFN---DTQLFHIINSIHQY-DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 D + + + +F + N + ++ + +L+++ + P G LPDL SR++ ++ Sbjct: 108 DAIAGHPVWEEAIFDLYNRVAEHKNCALVVSGSSSPADAGFLLPDLVSRMQWGLNYQLQP 167 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232 DD + + A R + + + + +++ RM R L ++DK+D +L +T Sbjct: 168 MADDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDKLDKASLVHQRKLTI 227 Query: 233 SLAAEVLK 240 A E+L Sbjct: 228 PFAKEMLH 235 >gi|70725002|ref|YP_251916.1| chromosomal replication initiation protein [Staphylococcus haemolyticus JCSC1435] gi|123762366|sp|Q4LAL5|DNAA_STAHJ RecName: Full=Chromosomal replication initiator protein DnaA gi|68445726|dbj|BAE03310.1| chromosomal replication initiator protein [Staphylococcus haemolyticus JCSC1435] Length = 451 Score = 41.6 bits (96), Expect = 0.091, Method: Compositional matrix adjust. Identities = 31/138 (22%), Positives = 63/138 (45%), Gaps = 3/138 (2%) Query: 111 VLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 +L++DI + + + FH N +HQ +++++ P L SR + + Sbjct: 214 LLIDDIQFIQNKEQTQEEFFHTFNELHQNKKQIVISSDRPPKEIAKLEDRLRSRFEWGLI 273 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 V I+ PD + ++ K + + I + YI +++ ++ E + ++ + +G Sbjct: 274 VDITPPDYETRMAILQKKIEEENLEIPAEALNYIANQIQSNIRELEGALTRLLAYSKLQG 333 Query: 228 MGITRSLAAEVLKETQQC 245 IT LAAE LK+ Q Sbjct: 334 RPITTELAAEALKDIIQV 351 >gi|228474142|ref|ZP_04058879.1| chromosomal replication initiator protein DnaA [Staphylococcus hominis SK119] gi|228271837|gb|EEK13174.1| chromosomal replication initiator protein DnaA [Staphylococcus hominis SK119] Length = 450 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 31/138 (22%), Positives = 63/138 (45%), Gaps = 3/138 (2%) Query: 111 VLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 +L++DI + + + FH N +HQ +++++ P L SR + + Sbjct: 213 LLIDDIQFIQNKEQTQEEFFHTFNELHQNKKQIVISSDRPPKEIAKLEDRLRSRFEWGLI 272 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 V I+ PD + ++ K + + I + YI +++ ++ E + ++ + +G Sbjct: 273 VDITPPDYETRMAILQKKIEEENLEIPAEALNYIANQIQSNIRELEGALTRLLAYSKLQG 332 Query: 228 MGITRSLAAEVLKETQQC 245 IT LAAE LK+ Q Sbjct: 333 KPITTELAAEALKDIIQV 350 >gi|314935201|ref|ZP_07842554.1| ATPase involved in DNA replication initiation [Staphylococcus hominis subsp. hominis C80] gi|313656536|gb|EFS20275.1| ATPase involved in DNA replication initiation [Staphylococcus hominis subsp. hominis C80] Length = 450 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 31/138 (22%), Positives = 63/138 (45%), Gaps = 3/138 (2%) Query: 111 VLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 +L++DI + + + FH N +HQ +++++ P L SR + + Sbjct: 213 LLIDDIQFIQNKEQTQEEFFHTFNELHQNKKQIVISSDRPPKEIAKLEDRLRSRFEWGLI 272 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 V I+ PD + ++ K + + I + YI +++ ++ E + ++ + +G Sbjct: 273 VDITPPDYETRMAILQKKIEEENLEIPAEALNYIANQIQSNIRELEGALTRLLAYSKLQG 332 Query: 228 MGITRSLAAEVLKETQQC 245 IT LAAE LK+ Q Sbjct: 333 KPITTELAAEALKDIIQV 350 >gi|262375589|ref|ZP_06068822.1| DnaA regulatory inactivator Hda [Acinetobacter lwoffii SH145] gi|262309843|gb|EEY90973.1| DnaA regulatory inactivator Hda [Acinetobacter lwoffii SH145] Length = 234 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 30/182 (16%) Query: 69 LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL-IDTRKPVLLEDIDLLDFNDTQ-- 125 + G +G+GKS L + D S I SL +L T L+ DL+ +D + Sbjct: 44 IYGGAGTGKSHLLSAICDSYLEVGKSAIQVSLLELLDAPTEAITSLDRFDLVALDDIEAI 103 Query: 126 ---------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI---SLP 173 +FH+IN ++ L+ ++R P+ + LPDL SRL A ++ SL Sbjct: 104 SGVPHWQRAVFHLINYNNEGGGQLVFSSRFAPIELKLELPDLQSRLTQAVSTRVPSGSLY 163 Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAY-----------IVQRMER--SLVFAEKLVDKMD 220 D + ++ + R I +D ++ Y ++QR+E+ L+ EKL Sbjct: 164 ADRY--ALVSSVLDRRGIHLDPQIFDYLLSHGPHQTSVLLQRLEQIIQLLKGEKLKVSNA 221 Query: 221 NL 222 NL Sbjct: 222 NL 223 >gi|92114232|ref|YP_574160.1| regulatory inactivation of DnaA Hda protein [Chromohalobacter salexigens DSM 3043] gi|91797322|gb|ABE59461.1| regulatory inactivation of DnaA Hda protein [Chromohalobacter salexigens DSM 3043] Length = 232 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 33/130 (25%), Positives = 53/130 (40%), Gaps = 14/130 (10%) Query: 110 PVLLEDIDLLDFN--------------DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 P +LED++ LD + LFH N + D L++ A P L Sbjct: 87 PHMLEDLERLDLVAIDDLSAVLGRKRWEEGLFHFFNRMRDADKRLVIAADAAPRQLSTVL 146 Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215 PDL SRL ++ DD + + R + + ++A YI+ R R L Sbjct: 147 PDLASRLTWGVTFHVAPLDDAGRFEALQLRARVRGMQLPDEVARYILHRGPRQLPALFDA 206 Query: 216 VDKMDNLALS 225 + ++D +LS Sbjct: 207 LARLDRASLS 216 >gi|120599138|ref|YP_963712.1| DNA replication initiation factor [Shewanella sp. W3-18-1] gi|120559231|gb|ABM25158.1| regulatory inactivation of DnaA Hda protein [Shewanella sp. W3-18-1] Length = 236 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 41/188 (21%), Positives = 87/188 (46%), Gaps = 13/188 (6%) Query: 66 VVILVGPSGSGKSCLANIWSDKS-----RSTRFS-NIAKSLDSILIDTRKP---VLLEDI 116 + L GP SG++ L + + RS I S+ + L++ + V ++D+ Sbjct: 48 AIYLWGPVKSGRTHLMHAACAHANELDRRSFYIPLGIHASISTALLEGLEQLDLVCIDDV 107 Query: 117 DLLDFN---DTQLFHIINSIHQY-DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 D + + + +F + N + ++ + +L+++ + P G LPDL SR++ ++ Sbjct: 108 DAIAGHPIWEEAIFDLYNRVAEHKNCALVVSGSSSPAEAGFLLPDLVSRMQWGLNYQLQP 167 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232 DD + + A R + + + + +++ RM R L ++DK+D +L +T Sbjct: 168 MADDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDKLDKASLVHQRKLTI 227 Query: 233 SLAAEVLK 240 A E+L Sbjct: 228 PFAKEMLH 235 >gi|146292791|ref|YP_001183215.1| DNA replication initiation factor [Shewanella putrefaciens CN-32] gi|145564481|gb|ABP75416.1| regulatory inactivation of DnaA Hda protein [Shewanella putrefaciens CN-32] gi|319426095|gb|ADV54169.1| DnaA regulatory inactivator Hda [Shewanella putrefaciens 200] Length = 236 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 41/188 (21%), Positives = 87/188 (46%), Gaps = 13/188 (6%) Query: 66 VVILVGPSGSGKSCLANIWSDKS-----RSTRFS-NIAKSLDSILIDTRKP---VLLEDI 116 + L GP SG++ L + + RS I S+ + L++ + V ++D+ Sbjct: 48 AIYLWGPVKSGRTHLMHAACAHANELDRRSFYIPLGIHASISTALLEGLEQLDLVCIDDV 107 Query: 117 DLLDFN---DTQLFHIINSIHQY-DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 D + + + +F + N + ++ + +L+++ + P G LPDL SR++ ++ Sbjct: 108 DAIAGHPLWEEAIFDLYNRVAEHKNCALVVSGSSSPAEAGFLLPDLVSRMQWGLNYQLQP 167 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232 DD + + A R + + + + +++ RM R L ++DK+D +L +T Sbjct: 168 MADDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDKLDKASLVHQRKLTI 227 Query: 233 SLAAEVLK 240 A E+L Sbjct: 228 PFAKEMLH 235 >gi|257464853|ref|ZP_05629224.1| DNA replication initiation factor [Actinobacillus minor 202] gi|257450513|gb|EEV24556.1| DNA replication initiation factor [Actinobacillus minor 202] Length = 236 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 42/189 (22%), Positives = 86/189 (45%), Gaps = 24/189 (12%) Query: 75 SGKSC--------LANIWSDKSRSTRFSNIAKS--LDSILIDTRKP---VLLEDIDLLDF 121 GKSC ++N + RS+ + ++KS +++D + L+DI + Sbjct: 46 GGKSCGKSHLLKAVSNYYLQNQRSSSYIPLSKSHYFSPMVLDNAAQLDVICLDDIQAIAG 105 Query: 122 ND---TQLFHIINSIHQ--------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 N+ +F + N I + + + LL++A P + LPDL SRL V + Sbjct: 106 NEEWEVAIFDLFNQIREQQSLFGNGHKTLLLISADCPPHELKIKLPDLRSRLIWGEVYHL 165 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 + +D+ +K++ + I + ++AA++++R+ L ++++D +L + Sbjct: 166 NHLNDEQKQKILKTSAYQKGIDLPDEVAAFLLKRLGNDLQVLLTELERLDRASLQAQRNL 225 Query: 231 TRSLAAEVL 239 T EVL Sbjct: 226 TVPFVKEVL 234 >gi|238026308|ref|YP_002910539.1| DnaA regulatory inactivator Hda [Burkholderia glumae BGR1] gi|237875502|gb|ACR27835.1| Chromosomal replication initiator protein DnaA [Burkholderia glumae BGR1] Length = 334 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 83/182 (45%), Gaps = 12/182 (6%) Query: 71 GPSGSGKSCL--ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD-FNDTQ-- 125 G +GSG+S L A + S R+ L +I D R V L +D +D +DTQ Sbjct: 148 GEAGSGRSHLLQALVHDTSYGSARYLTPQSPLGAIAFDPR--VSLYAVDDIDAMSDTQQI 205 Query: 126 -LFHIINSIHQYDSSLLMTAR-TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 LF++ N + + SS + A P++ V DL +RL V ++ P D + V+ Sbjct: 206 ALFNLFNEVRAHPSSAFVGAGPAAPLALDV-REDLRTRLGWGLVFHLA-PLSDADKAVVF 263 Query: 184 KMFAD-RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 K A R I I + AY++ R + L+D +D +L + +T L +L Sbjct: 264 KQAAKARGIAIADDVPAYLLTHYRRDMPSLMALLDALDRFSLEQKRAVTLPLLRALLTAL 323 Query: 243 QQ 244 ++ Sbjct: 324 ER 325 >gi|34556459|ref|NP_906274.1| chromosomal replication initiation protein [Wolinella succinogenes DSM 1740] gi|61212685|sp|Q7MSY2|DNAA_WOLSU RecName: Full=Chromosomal replication initiator protein DnaA gi|34482173|emb|CAE09174.1| dnaA, probable chromosomal replication initiator protein [Wolinella succinogenes] Length = 437 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 37/155 (23%), Positives = 65/155 (41%), Gaps = 15/155 (9%) Query: 92 RFSNIAKSLDSILID-----TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTART 146 RF + ++ D +LID KP + E+ FH N +H + +++T+ Sbjct: 189 RFRDKYRACDYLLIDDVQFFGGKPQIQEE----------FFHTFNELHNKNKQIVLTSDK 238 Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206 P L SR + V I P+ + +I K I++ ++ +YI M+ Sbjct: 239 TPKQIAGLEERLKSRFEWGMVSDIQPPELETKINIIKKKCEFDGIYLSNEIISYIATNMD 298 Query: 207 RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++ E ++ K++ A IT A VLKE Sbjct: 299 NNIREIEGIIIKLNAYANLMNQEITLQFAKNVLKE 333 >gi|119775051|ref|YP_927791.1| DNA replication initiation factor [Shewanella amazonensis SB2B] gi|119767551|gb|ABM00122.1| regulatory inactivation of DnaA Hda protein [Shewanella amazonensis SB2B] Length = 241 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 43/196 (21%), Positives = 84/196 (42%), Gaps = 27/196 (13%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFS--------NIAKSLDSILIDTRKPVLLEDI 116 + + L GP SG++ L I + +R+ I S+ + L++ LE Sbjct: 52 QAIYLWGPVKSGRTHL--IHAACARANELERRSFYIPLGIHASISTALLEG-----LEQF 104 Query: 117 DLLDFNDT-----------QLFHIINSI-HQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164 DL+ +D +F + N + Q SL+++A P+ G LPDL SR+ Sbjct: 105 DLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHW 164 Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 ++ DD + + A R + + + + +++ RM R L ++D++D ++ Sbjct: 165 GLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDRLDKASM 224 Query: 225 SRGMGITRSLAAEVLK 240 +T E+L+ Sbjct: 225 VHQRKLTIPFVKEMLR 240 >gi|197119682|ref|YP_002140109.1| DnaA regulatory inactivator Hda [Geobacter bemidjiensis Bem] gi|197089042|gb|ACH40313.1| DnaA regulatory inactivator Hda [Geobacter bemidjiensis Bem] Length = 234 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 51/234 (21%), Positives = 101/234 (43%), Gaps = 23/234 (9%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSR-VVILVGPSGSGKSCLANIWS 85 QL F FP ++ +V + A + P+ ++ + GP GSGK+ L S Sbjct: 2 QLIFDFPVVPRFGFENFVVCGGNKTAYQFAKKLVEDPTENLLYIYGPEGSGKTHLLTALS 61 Query: 86 DKSRSTRFS-NIAKSLDSILIDTRKP------------VLLEDIDLL-DFNDT--QLFHI 129 + FS A SL + + P ++L+D+ LL + ++ +L+ + Sbjct: 62 NSIDGRYFSFRDAGSLYGSSVGSEGPSRLAEHFQGAAALVLDDLHLLPNLHEVRVELWEL 121 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N+ + + ++ P L SRL V ++ + DD+ ++ K+ DR Sbjct: 122 FNAFYSSGRKIAISGLMPPKELPHLDGHLTSRLLWGLVARMDVSDDESRRMILKKLAEDR 181 Query: 190 QIFIDKKLAAYIVQRMER---SLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 Q+ + + ++ R+ R SLV+A ++ ++ A+S ++ LA E + Sbjct: 182 QMALPDDVIDEMLLRVRRDIPSLVYA---LENINRYAISTKRKVSLRLAKEAFR 232 >gi|332283314|ref|YP_004415225.1| hypothetical protein PT7_0061 [Pusillimonas sp. T7-7] gi|330427267|gb|AEC18601.1| hypothetical protein PT7_0061 [Pusillimonas sp. T7-7] Length = 233 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 45/196 (22%), Positives = 90/196 (45%), Gaps = 14/196 (7%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF--SNIAKSLDSIL---IDTRKPVLLEDID 117 P R V L G G+G++ L + + + F S+ A+SL SI + + + +++++ Sbjct: 37 PGRAVYLWGAPGAGRTHLLQSVASGADTRYFHHSDNAQSLRSIASADLLAYRLIAIDNVE 96 Query: 118 LLDFNDTQ--LFHIINSIHQYDSS-----LLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 LD +D Q LF + N + ++ L++ P++ + DL +RL V ++ Sbjct: 97 SLD-DDRQAALFALYNRWREVAATPQGFALVLAGDRAPLTMPLR-EDLRTRLGWDLVFRL 154 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 D+ + + ADR + + ++ +++ R + L+D +D +L R I Sbjct: 155 EQLSDEHRAQALSTRAADRGLQLGPEVINWVLTHYTRDMRHLSALIDALDRYSLERHRAI 214 Query: 231 TRSLAAEVLKETQQCD 246 T L E+L Q + Sbjct: 215 TLPLLKELLASGQPVN 230 >gi|197118824|ref|YP_002139251.1| recombination factor protein RarA [Geobacter bemidjiensis Bem] gi|197088184|gb|ACH39455.1| stalled replication fork rescue ATPase [Geobacter bemidjiensis Bem] Length = 434 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 64/140 (45%), Gaps = 25/140 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I GP GSGK+ LA I ++ +RS FS I + I + V+ E D L + Sbjct: 52 LIFWGPPGSGKTTLARIIANATRSHFIFFSAIMSGIKEI-----REVVKEAEDTLKYQGK 106 Query: 125 QLFHIINSIHQYDSS--------------LLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 + ++ IH+++ S ++ A T S+ V P L SR K +V Sbjct: 107 RTILFVDEIHRFNKSQQDAFLPHVERGTFTIIGATTENPSFEVIAP-LLSRCK--VLVLQ 163 Query: 171 SLPDDDFLEKVIVKMFADRQ 190 L D+D L K++ ADR+ Sbjct: 164 PLSDEDLL-KILENALADRE 182 >gi|329735774|gb|EGG72055.1| chromosomal replication initiator protein DnaA [Staphylococcus epidermidis VCU028] gi|329736075|gb|EGG72348.1| chromosomal replication initiator protein DnaA [Staphylococcus epidermidis VCU045] Length = 451 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 30/138 (21%), Positives = 63/138 (45%), Gaps = 3/138 (2%) Query: 111 VLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 +L++DI + + + FH N +HQ + +++++ P L SR + + Sbjct: 214 LLIDDIQFIQNKEQTQEEFFHTFNELHQNNKQIVISSDRPPKEIAKLEDRLRSRFEWGLI 273 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 V I+ PD + ++ K + + I + YI +++ ++ E + ++ + +G Sbjct: 274 VDITPPDYETRMAILQKKIEEENLDIPPEALNYIANQIQSNIRELEGALTRLLAYSKLQG 333 Query: 228 MGITRSLAAEVLKETQQC 245 IT L AE LK+ Q Sbjct: 334 KPITTELTAEALKDIIQS 351 >gi|311748263|ref|ZP_07722048.1| DNA replication initiator protein, ATPase [Algoriphagus sp. PR1] gi|126576758|gb|EAZ81006.1| DNA replication initiator protein, ATPase [Algoriphagus sp. PR1] Length = 472 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 67/152 (44%), Gaps = 13/152 (8%) Query: 93 FSNIAKSLDSILIDTRKPVLLEDIDLLDFND-TQ--LFHIINSIHQYDSSLLMTARTFPV 149 F+N +D ++ID DI L D TQ FHI N +HQ ++MT+ P Sbjct: 224 FTNFYMQVDVLIID--------DIQFLAGKDRTQEMFFHIFNHLHQNKKQIIMTSDCPPR 275 Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209 L SR K + +PD + +I + IFI + Y+ ++ ++ Sbjct: 276 DLKGLEERLLSRFKWGLTADLQMPDFETRVAIIRRKMQSEGIFIPDDVVEYLAYTVDTNV 335 Query: 210 VFAEK-LVDKMDNLALSRGMGITRSLAAEVLK 240 E L+ + + +LSR + I+ LA V+K Sbjct: 336 RELEGILISLIAHASLSR-VEISLELAKTVMK 366 >gi|148263480|ref|YP_001230186.1| chromosomal replication initiator, DnaA [Geobacter uraniireducens Rf4] gi|146396980|gb|ABQ25613.1| regulatory inactivation of DnaA Hda protein [Geobacter uraniireducens Rf4] Length = 241 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 51/239 (21%), Positives = 95/239 (39%), Gaps = 25/239 (10%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW--PSRVVILVGPSGSGKSCLANIW 84 QL F FP D+ +V + + A ++ L G +GSGK+ L Sbjct: 2 QLIFDFPVNPKFGFDNFVVCAGNKTAYHFARQLAEGDGTENLLYLYGSTGSGKTHLLTAM 61 Query: 85 S---------DKSRSTRFSNIAK-----------SLDSILIDTRKPVLLEDIDLLDFNDT 124 + D S F NI + S + + +L++DI L+ ND Sbjct: 62 ANSICREAGLDAIPSISFKNIDELYRGNYPAEEPSKLAERFNNAPALLVDDIHLIPDNDN 121 Query: 125 ---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 +L+ + N + + +T P L SRL V K+ + DD L + Sbjct: 122 IRVELWQLFNDFYTAGKKIAITGLNPPKELPHLDGHLTSRLLWGLVTKLDISGDDSLRMI 181 Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + K+ DRQ+ + + + A+++ + R + ++++ A++ I+ A E L+ Sbjct: 182 LQKLAEDRQVALPEDVIAHLLVHIRRDIPSLLNALEQIRRHAIATKRKISLRQAKEALQ 240 >gi|319399914|gb|EFV88160.1| chromosomal replication initiator protein DnaA [Staphylococcus epidermidis FRI909] Length = 451 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 30/138 (21%), Positives = 63/138 (45%), Gaps = 3/138 (2%) Query: 111 VLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 +L++DI + + + FH N +HQ + +++++ P L SR + + Sbjct: 214 LLIDDIQFIQNKEQTQEEFFHTFNELHQNNKQIVISSDRPPKEIAKLEDRLRSRFEWGLI 273 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 V I+ PD + ++ K + + I + YI +++ ++ E + ++ + +G Sbjct: 274 VDITPPDYETRMAILQKKIEEENLDIPPEALNYIANQIQSNIRELEGALTRLLAYSKLQG 333 Query: 228 MGITRSLAAEVLKETQQC 245 IT L AE LK+ Q Sbjct: 334 KPITTELTAEALKDIIQS 351 >gi|57865939|ref|YP_190094.1| chromosomal replication initiation protein [Staphylococcus epidermidis RP62A] gi|71151806|sp|Q5HJZ9|DNAA_STAEQ RecName: Full=Chromosomal replication initiator protein DnaA gi|57636597|gb|AAW53385.1| chromosomal replication initiator protein DnaA [Staphylococcus epidermidis RP62A] Length = 451 Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust. Identities = 30/138 (21%), Positives = 63/138 (45%), Gaps = 3/138 (2%) Query: 111 VLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 +L++DI + + + FH N +HQ + +++++ P L SR + + Sbjct: 214 LLIDDIQFIQNKEQTQEEFFHTFNELHQNNKQIVISSDRPPKEIAKLEDRLRSRFEWGLI 273 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 V I+ PD + ++ K + + I + YI +++ ++ E + ++ + +G Sbjct: 274 VDITPPDYETRMAILQKKIEEENLDIPPEALNYIANQIQSNIRELEGALTRLLAYSKLQG 333 Query: 228 MGITRSLAAEVLKETQQC 245 IT L AE LK+ Q Sbjct: 334 KPITTELTAEALKDIIQS 351 >gi|27466919|ref|NP_763556.1| chromosomal replication initiation protein [Staphylococcus epidermidis ATCC 12228] gi|282874721|ref|ZP_06283600.1| chromosomal replication initiator protein DnaA [Staphylococcus epidermidis SK135] gi|38257580|sp|Q8CQK7|DNAA_STAES RecName: Full=Chromosomal replication initiator protein DnaA gi|27314461|gb|AAO03598.1|AE016744_1 chromosomal replication initiator protein [Staphylococcus epidermidis ATCC 12228] gi|281296437|gb|EFA88952.1| chromosomal replication initiator protein DnaA [Staphylococcus epidermidis SK135] gi|329724160|gb|EGG60678.1| chromosomal replication initiator protein DnaA [Staphylococcus epidermidis VCU144] Length = 451 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 30/138 (21%), Positives = 63/138 (45%), Gaps = 3/138 (2%) Query: 111 VLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 +L++DI + + + FH N +HQ + +++++ P L SR + + Sbjct: 214 LLIDDIQFIQNKEQTQEEFFHTFNELHQNNKQIVISSDRPPKEIAKLEDRLRSRFEWGLI 273 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 V I+ PD + ++ K + + I + YI +++ ++ E + ++ + +G Sbjct: 274 VDITPPDYETRMAILQKKIEEENLDIPPEALNYIANQIQSNIRELEGALTRLLAYSKLQG 333 Query: 228 MGITRSLAAEVLKETQQC 245 IT L AE LK+ Q Sbjct: 334 KPITTELTAEALKDIIQS 351 >gi|242243255|ref|ZP_04797700.1| replication initiation protein DnaA [Staphylococcus epidermidis W23144] gi|242233204|gb|EES35516.1| replication initiation protein DnaA [Staphylococcus epidermidis W23144] Length = 455 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 30/138 (21%), Positives = 63/138 (45%), Gaps = 3/138 (2%) Query: 111 VLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 +L++DI + + + FH N +HQ + +++++ P L SR + + Sbjct: 218 LLIDDIQFIQNKEQTQEEFFHTFNELHQNNKQIVISSDRPPKEIAKLEDRLRSRFEWGLI 277 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 V I+ PD + ++ K + + I + YI +++ ++ E + ++ + +G Sbjct: 278 VDITPPDYETRMAILQKKIEEENLDIPPEALNYIANQIQSNIRELEGALTRLLAYSKLQG 337 Query: 228 MGITRSLAAEVLKETQQC 245 IT L AE LK+ Q Sbjct: 338 KPITTELTAEALKDIIQS 355 >gi|242372602|ref|ZP_04818176.1| replication initiation protein DnaA [Staphylococcus epidermidis M23864:W1] gi|242349657|gb|EES41258.1| replication initiation protein DnaA [Staphylococcus epidermidis M23864:W1] Length = 455 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 30/138 (21%), Positives = 63/138 (45%), Gaps = 3/138 (2%) Query: 111 VLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 +L++DI + + + FH N +HQ + +++++ P L SR + + Sbjct: 218 LLIDDIQFIQNKEQTQEEFFHTFNELHQNNKQIVISSDRPPKEIAKLEDRLRSRFEWGLI 277 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 V I+ PD + ++ K + + I + YI +++ ++ E + ++ + +G Sbjct: 278 VDITPPDYETRMAILQKKIEEENLDIPPEALNYIANQIQSNIRELEGALTRLLAYSKLQG 337 Query: 228 MGITRSLAAEVLKETQQC 245 IT L AE LK+ Q Sbjct: 338 KPITTELTAEALKDIIQA 355 >gi|240949838|ref|ZP_04754164.1| DNA replication initiation factor [Actinobacillus minor NM305] gi|240295692|gb|EER46394.1| DNA replication initiation factor [Actinobacillus minor NM305] Length = 236 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 42/189 (22%), Positives = 86/189 (45%), Gaps = 24/189 (12%) Query: 75 SGKSC--------LANIWSDKSRSTRFSNIAKS--LDSILIDTRKP---VLLEDIDLLDF 121 GKSC ++N + RS+ + ++KS +++D + L+DI + Sbjct: 46 GGKSCGKSHLLKAVSNYYLQNQRSSSYIPLSKSHYFSPMVLDNAAQLDVICLDDIQAIAG 105 Query: 122 ND---TQLFHIINSIHQ--------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 N+ +F + N I + + + LL++A P + LPDL SRL V + Sbjct: 106 NEEWEVAIFDLFNQIREQQSLFGNGHKTLLLISADCPPHELKIKLPDLRSRLIWGEVYHL 165 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 + +D+ +K++ + I + ++AA++++R+ L ++++D +L + Sbjct: 166 NHLNDEQKQKILKTSAYQKGIDLPDEVAAFLLKRLGSDLQVLLTELERLDRASLQAQRNL 225 Query: 231 TRSLAAEVL 239 T EVL Sbjct: 226 TVPFVKEVL 234 >gi|113969917|ref|YP_733710.1| DNA replication initiation factor [Shewanella sp. MR-4] gi|114047153|ref|YP_737703.1| DNA replication initiation factor [Shewanella sp. MR-7] gi|117920090|ref|YP_869282.1| DNA replication initiation factor [Shewanella sp. ANA-3] gi|113884601|gb|ABI38653.1| regulatory inactivation of DnaA Hda protein [Shewanella sp. MR-4] gi|113888595|gb|ABI42646.1| regulatory inactivation of DnaA Hda protein [Shewanella sp. MR-7] gi|117612422|gb|ABK47876.1| regulatory inactivation of DnaA Hda protein [Shewanella sp. ANA-3] Length = 236 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 38/154 (24%), Positives = 70/154 (45%), Gaps = 6/154 (3%) Query: 88 SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDS-SLLMTART 146 S ST + LD I ID ++DI + +F + N + + +L+++ R+ Sbjct: 87 SISTALLEGLEQLDLICIDD-----VDDIAGHPIWEEAIFDLYNRVAENKRCALVVSGRS 141 Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206 P G LPDL SR++ ++ DD + + A R + + + + +++ RM Sbjct: 142 APADAGFLLPDLVSRMQWGLNYQLQPMADDEKLAALQRRAAMRGLQLPEDVGRFLLNRMA 201 Query: 207 RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 R L ++DK+D +L +T A E+L Sbjct: 202 RDLRTLFDVLDKLDKASLVHQRKLTIPFAKEMLH 235 >gi|319786687|ref|YP_004146162.1| DnaA regulatory inactivator Hda [Pseudoxanthomonas suwonensis 11-1] gi|317465199|gb|ADV26931.1| DnaA regulatory inactivator Hda [Pseudoxanthomonas suwonensis 11-1] Length = 237 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 39/175 (22%), Positives = 75/175 (42%), Gaps = 21/175 (12%) Query: 67 VILVGPSGSGKSCLA-NIWSDKSRSTRFSNI---------------AKSLDSILIDTRKP 110 + L GP+GSGK+ L + ++ + R + A+ D + +D Sbjct: 51 IYLEGPAGSGKTHLGLGVCAEADGAGRRAAYLPLRAARGRLREALEAQEADVVALDG--- 107 Query: 111 VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 LE I ++ LF N + +S+L A P + + LPDL SRL T + + Sbjct: 108 --LEAIAGDRDDEVALFDFHNRMRAAGASVLYLATAAPQALPLVLPDLRSRLGQCTRIAL 165 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 DD+ V+ R + +++ +++ R R + L++++D +L+ Sbjct: 166 HPLDDEGRRAVLRDRARRRGLVLEEAAIDWLLTRTGRDMGRLLGLLERIDRASLA 220 >gi|251811364|ref|ZP_04825837.1| replication initiation protein DnaA [Staphylococcus epidermidis BCM-HMP0060] gi|251805113|gb|EES57770.1| replication initiation protein DnaA [Staphylococcus epidermidis BCM-HMP0060] Length = 455 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 30/138 (21%), Positives = 63/138 (45%), Gaps = 3/138 (2%) Query: 111 VLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 +L++DI + + + FH N +HQ + +++++ P L SR + + Sbjct: 218 LLIDDIQFIQNKEQTQEEFFHTFNELHQNNKQIVISSDRPPKEIAKLEDRLRSRFEWGLI 277 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 V I+ PD + ++ K + + I + YI +++ ++ E + ++ + +G Sbjct: 278 VDITPPDYETRMAILQKKIEEENLDIPPEALNYIANQIQSNIRELEGALTRLLAYSKLQG 337 Query: 228 MGITRSLAAEVLKETQQC 245 IT L AE LK+ Q Sbjct: 338 KPITTELTAEALKDIIQS 355 >gi|293367580|ref|ZP_06614233.1| ATPase [Staphylococcus epidermidis M23864:W2(grey)] gi|291318293|gb|EFE58686.1| ATPase [Staphylococcus epidermidis M23864:W2(grey)] Length = 455 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 30/138 (21%), Positives = 63/138 (45%), Gaps = 3/138 (2%) Query: 111 VLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 +L++DI + + + FH N +HQ + +++++ P L SR + + Sbjct: 218 LLIDDIQFIQNKEQTQEEFFHTFNELHQNNKQIVISSDRPPKEIAKLEDRLRSRFEWGLI 277 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 V I+ PD + ++ K + + I + YI +++ ++ E + ++ + +G Sbjct: 278 VDITPPDYETRMAILQKKIEEENLDIPPEALNYIANQIQSNIRELEGALTRLLAYSKLQG 337 Query: 228 MGITRSLAAEVLKETQQC 245 IT L AE LK+ Q Sbjct: 338 KPITTELTAEALKDIIQS 355 >gi|212550358|ref|YP_002308675.1| chromosomal replication initiation protein DnaA [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548596|dbj|BAG83264.1| chromosomal replication initiation protein DnaA [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 455 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 3/98 (3%) Query: 111 VLLEDIDLLDFNDTQL---FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 ++L+DI L + L FHI N +HQ +++TA P L SRLK Sbjct: 220 LILDDIHELSGKEKTLQAYFHIFNHLHQLGRQIILTADKIPAEIIGLEERLTSRLKWGLT 279 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 +++ PD + +K++ R++ + +++ YI + + Sbjct: 280 IELQKPDLELRKKILNYRIRQRRLSVPEEVIDYIAENV 317 >gi|238898965|ref|YP_002924647.1| regulatory factor involved in inactivation of DnaA [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466725|gb|ACQ68499.1| regulatory factor involved in inactivation of DnaA [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 246 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 52/215 (24%), Positives = 99/215 (46%), Gaps = 35/215 (16%) Query: 47 SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID 106 +AIE A L DS R + GSG+S L + + + S K++ + +D Sbjct: 45 AAIESA--LCDSH----GRYIYFWSKQGSGRSHLLH-----AACSTLSKQGKAVGYVPLD 93 Query: 107 TRKPVLLEDIDLLD-------------FNDTQ----LFHIINSIHQYDSS-LLMTARTFP 148 R +E ++ ++ D + +FH+ N I + D + LLMT P Sbjct: 94 KRAYFTVEVLEGMEQLALICIDNIEHIVGDIEWEMGIFHLYNRILEKDHTCLLMTGDRPP 153 Query: 149 VSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEKVI-VKMFADRQIF-IDKKLAAYIVQRM 205 + LPDL SRL + K+ L DDD KV+ +++ A + F + +++ ++++R+ Sbjct: 154 RQLHLHLPDLASRLDWGQIYKLQPLSDDD---KVLSLQLRAKLRGFELPEEVGRFMLKRL 210 Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 +R + +D++D ++ +T E+L+ Sbjct: 211 DREMPSLFMALDRLDKASIRAQRKLTIPFVKEILR 245 >gi|109898802|ref|YP_662057.1| chromosomal replication initiator, DnaA [Pseudoalteromonas atlantica T6c] gi|109701083|gb|ABG41003.1| regulatory inactivation of DnaA Hda protein [Pseudoalteromonas atlantica T6c] Length = 237 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 17/185 (9%) Query: 71 GPSGSGKSCLANIWSDKSRSTRFSNIAKS-----------LDSILIDTRKPVLLEDIDLL 119 G G GKS L K++S S + S LD + + + + L+D D L Sbjct: 53 GDHGVGKSHLLYSLCHKAQSANVSAVYLSFKDKQQYSPEVLDGL--EHSQLICLDDADAL 110 Query: 120 DFNDT---QLFHIINSIHQYD-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 + T +F ++N + + S +++ A P S + L DL SRL ++ D Sbjct: 111 QDSQTWQIAVFDLLNRVKELGRSHVVVCANGGPTSLNLQLADLASRLAWGVSFTLASLSD 170 Query: 176 DFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235 + ++ R + + +K+A Y+V +R + +DK+D L+L + +T Sbjct: 171 EGRCVALLTRARQRGLVMPEKVAMYLVNHWQRDMPSLMNTLDKLDQLSLQQQRKLTIPFV 230 Query: 236 AEVLK 240 E L Sbjct: 231 KEALN 235 >gi|148825820|ref|YP_001290573.1| DNA replication initiation factor [Haemophilus influenzae PittEE] gi|148715980|gb|ABQ98190.1| hypothetical protein CGSHiEE_03865 [Haemophilus influenzae PittEE] Length = 231 Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust. Identities = 44/182 (24%), Positives = 86/182 (47%), Gaps = 13/182 (7%) Query: 71 GPSGSGKSCLANIWSDK----SRSTRFSNIAKSL---DSIL--IDTRKPVLLEDIDLLDF 121 G GSGK+ L +S++ R+ + ++KS ++L ++ ++ V L+D+ + Sbjct: 48 GDKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQYFSTAVLENLEQQELVCLDDLQSVIG 107 Query: 122 NDTQLFHIINSIHQYDSS----LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 ND I + +Q +S LL++A P + V LPDL SRL + +++ D+ Sbjct: 108 NDEWELAIFDLFNQIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQLNSLTDEQ 167 Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237 KV+ R + + A +++ R+ R + K +D +D +L +T + Sbjct: 168 KIKVLQLAAYQRGFQLSDETANFLITRLARDMHTLFKALDLLDKASLQAQRNLTIPFVKK 227 Query: 238 VL 239 +L Sbjct: 228 IL 229 >gi|297616541|ref|YP_003701700.1| ATPase AAA [Syntrophothermus lipocalidus DSM 12680] gi|297144378|gb|ADI01135.1| AAA ATPase central domain protein [Syntrophothermus lipocalidus DSM 12680] Length = 429 Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust. Identities = 39/153 (25%), Positives = 73/153 (47%), Gaps = 17/153 (11%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G+GK+ L NI + K+RS F + K++ + D R+ + E L F + Sbjct: 55 MILYGPPGTGKTTLGNIIAKKTRS-HFEYL-KAVSTTTADIRQ-LAGEAGQRLKFYGQRT 111 Query: 127 FHIINSIH-----QYDSSLLMTARTFPVSWGVC----LPDLCSRLKAATVVKISLP-DDD 176 ++ IH Q D+ L M + G L ++ S L + T + + P D+ Sbjct: 112 ILFLDEIHRFNKAQQDALLPMVEEGIFILIGATTENPLYEINSALLSRTHIYVLEPLDEQ 171 Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209 +E+++++ D+ ++ L Y ++ E +L Sbjct: 172 AIERILLRALNDK----ERGLGKYGIEITEEAL 200 >gi|147676336|ref|YP_001210551.1| chromosomal replication initiation protein [Pelotomaculum thermopropionicum SI] gi|146272433|dbj|BAF58182.1| ATPase [Pelotomaculum thermopropionicum SI] Length = 447 Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust. Identities = 34/156 (21%), Positives = 68/156 (43%), Gaps = 11/156 (7%) Query: 89 RSTRFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTAR 145 ++ F N + +D +L+D DI L + + FH N++++ + +++++ Sbjct: 196 KTVEFRNKYRGMDILLVD--------DIQFLAGKERTQEEFFHTFNTLYEANKQIIISSD 247 Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 P L SR + + I PD + ++ K +F+ YI R+ Sbjct: 248 RPPKEIPTLEDRLRSRFEWGLITDIQPPDLETRIAILRKKSQQENLFVPDDTIFYIANRI 307 Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + ++ E + ++ A G I+ LAAEVLK+ Sbjct: 308 QSNIRELEGALIRVIAYASLNGKEISPELAAEVLKD 343 >gi|119896293|ref|YP_931506.1| chromosomal replication initiation protein [Azoarcus sp. BH72] gi|166201859|sp|A1K1B4|DNAA_AZOSB RecName: Full=Chromosomal replication initiator protein DnaA gi|119668706|emb|CAL92619.1| chromosomal replication initiator protein [Azoarcus sp. BH72] Length = 480 Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust. Identities = 37/152 (24%), Positives = 67/152 (44%), Gaps = 11/152 (7%) Query: 93 FSNIAKSLDSILIDTRKPVLLEDIDLLDF-NDTQ--LFHIINSIHQYDSSLLMTARTFPV 149 F +SLD ++ID DI + N TQ FH N++ + +++T T+P Sbjct: 235 FKRYYRSLDMLIID--------DIQFFNNKNRTQEEFFHAFNALTEAKKQIVITCDTYPK 286 Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209 L SR V+I P+ + ++ K ++ +D +A I + + ++ Sbjct: 287 DIQGLEDRLISRFDWGLTVQIEPPELEMRVAILQKKAEALRVSVDDDVAFLIAKNLRSNV 346 Query: 210 VFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 E ++K+ A G GI+ +A E LK+ Sbjct: 347 RELEGALNKVVAYARFHGRGISLEVAKEALKD 378 >gi|157961790|ref|YP_001501824.1| DNA replication initiation factor [Shewanella pealeana ATCC 700345] gi|157846790|gb|ABV87289.1| Chromosomal replication initiator DnaA [Shewanella pealeana ATCC 700345] Length = 236 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 42/188 (22%), Positives = 88/188 (46%), Gaps = 13/188 (6%) Query: 66 VVILVGPSGSGKSCLANIW----SDKSRSTRFS--NIAKSLDSILIDTRKP---VLLEDI 116 V L GP SG++ L + +D RS+ + I S+ + L++ + V ++D+ Sbjct: 48 AVFLWGPEKSGRTHLMHAACAHANDLGRSSFYIPLGIHASISTALLEGLEKLDLVCIDDV 107 Query: 117 DLLDFN---DTQLFHIINSI-HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 D + + + +F + N I Q SL+++A P G LPDL SR++ ++ Sbjct: 108 DAIAGHPLWEEAIFDLYNRISEQKTCSLVVSASVSPSDSGFSLPDLVSRMQWGLNYQLQP 167 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232 D+ + + A R + + + + +++ R+ R L ++D++D ++ +T Sbjct: 168 MADEEKLAALQRRAAMRGLQLPEDVGRFLLNRLARDLRTLFDVLDRLDKASMVHQRKLTI 227 Query: 233 SLAAEVLK 240 E+L+ Sbjct: 228 PFIKEMLR 235 >gi|260582654|ref|ZP_05850443.1| DnaA regulatory inactivator Hda [Haemophilus influenzae NT127] gi|260094326|gb|EEW78225.1| DnaA regulatory inactivator Hda [Haemophilus influenzae NT127] Length = 231 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 44/182 (24%), Positives = 86/182 (47%), Gaps = 13/182 (7%) Query: 71 GPSGSGKSCLANIWSDK----SRSTRFSNIAKSL---DSIL--IDTRKPVLLEDIDLLDF 121 G GSGK+ L +S++ R+ + ++KS ++L ++ ++ V L+D+ + Sbjct: 48 GNKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQYFSTAVLENLEQQELVCLDDLQSVIG 107 Query: 122 NDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 ND +F + N I +LL+ +A P + V LPDL SRL + +++ D+ Sbjct: 108 NDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQLNSLTDEQ 167 Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237 KV+ R + + A +++ R+ R + + +D +D +L +T E Sbjct: 168 KIKVLQLAAYQRGFQLSDETANFLITRLARDMHTLFEALDLLDKASLQAQRNLTIPFVKE 227 Query: 238 VL 239 +L Sbjct: 228 IL 229 >gi|24374406|ref|NP_718449.1| DNA replication initiation factor [Shewanella oneidensis MR-1] gi|24348974|gb|AAN55893.1|AE015726_1 conserved hypothetical protein [Shewanella oneidensis MR-1] Length = 236 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 38/154 (24%), Positives = 70/154 (45%), Gaps = 6/154 (3%) Query: 88 SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDS-SLLMTART 146 S ST + LD I ID ++DI + +F + N + + +L+++ R+ Sbjct: 87 SISTALLEGLEQLDLICIDD-----VDDIAGHPVWEEAIFDLYNRVAENKRCALVVSGRS 141 Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206 P G LPDL SR++ ++ DD + + A R + + + + +++ RM Sbjct: 142 APADAGFLLPDLVSRMQWGLNYQLQPMADDEKLAALQRRAAMRGLQLPEDVGRFLLNRMA 201 Query: 207 RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 R L ++DK+D +L +T A E+L Sbjct: 202 RDLRTLFDVLDKLDKASLVHQRKLTIPFAKEMLH 235 >gi|325130189|gb|EGC52963.1| DnaA regulatory inactivator Hda [Neisseria meningitidis OX99.30304] Length = 147 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 2/120 (1%) Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 LF I N L+ + V DL +R+ V ++ D + M Sbjct: 28 LFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTRMAYCLVYEVKPLTDQEKIDALASM 87 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK--ETQ 243 A RQ+ +D ++ Y+++ R + ++D +DN A++ G IT L ++LK ETQ Sbjct: 88 AAARQVTVDSEIFEYLLKHWRRDMDSLMMMLDTLDNYAVTMGKRITLPLLRQLLKQQETQ 147 >gi|229845047|ref|ZP_04465183.1| DNA replication initiation factor [Haemophilus influenzae 6P18H1] gi|229812019|gb|EEP47712.1| DNA replication initiation factor [Haemophilus influenzae 6P18H1] Length = 231 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 43/182 (23%), Positives = 86/182 (47%), Gaps = 13/182 (7%) Query: 71 GPSGSGKSCLANIWSDK----SRSTRFSNIAKSL---DSIL--IDTRKPVLLEDIDLLDF 121 G GSGK+ L +S++ R+ + ++KS ++L ++ ++ V L+D+ + Sbjct: 48 GDKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQYFSTAVLENLEQQELVCLDDLQSVIG 107 Query: 122 NDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 ND +F + N I +LL+ +A P + V LPDL SRL + +++ D+ Sbjct: 108 NDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQLNSLTDEQ 167 Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237 +V+ R + + A +++ R+ R + + +D +D +L +T E Sbjct: 168 KVEVLQHTAYQRGFQLSDETANFLITRLARDMHTLFEALDLLDKASLQAQRNLTIPFVKE 227 Query: 238 VL 239 +L Sbjct: 228 IL 229 >gi|221633151|ref|YP_002522376.1| chromosomal replication initiator protein DnaA [Thermomicrobium roseum DSM 5159] gi|254777921|sp|B9L0U6|DNAA_THERP RecName: Full=Chromosomal replication initiator protein DnaA gi|221156567|gb|ACM05694.1| chromosomal replication initiator protein DnaA [Thermomicrobium roseum DSM 5159] Length = 465 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 33/160 (20%), Positives = 76/160 (47%), Gaps = 19/160 (11%) Query: 89 RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTAR 145 R+ F N +++D ++ID DI + ++ + FH N+++Q +++++ Sbjct: 205 RTDDFRNRYRTIDILMID--------DIQFIAGKESTQEEFFHTFNALYQSGKQIVISSD 256 Query: 146 TFPVSWGVCLPDLCSRLK----AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 P +PDL RL+ + I PD + + ++++ + + + + ++ Sbjct: 257 RPPR----LIPDLADRLRSRFEGGLLADIQPPDLETRQAILIEKGRELGVQMPSDVVEFV 312 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 +R+E ++ E ++++ LA IT +LA E L+E Sbjct: 313 ARRIESNIRELEGALNRIVALAQLTHQPITLALAVEALRE 352 >gi|68250242|ref|YP_249354.1| DNA replication initiation factor [Haemophilus influenzae 86-028NP] gi|68058441|gb|AAX88694.1| predicted ATPase involved in DNA replication initiation [Haemophilus influenzae 86-028NP] Length = 231 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 43/182 (23%), Positives = 86/182 (47%), Gaps = 13/182 (7%) Query: 71 GPSGSGKSCLANIWSDK----SRSTRFSNIAKSL---DSIL--IDTRKPVLLEDIDLLDF 121 G GSGK+ L +S++ R+ + ++KS ++L ++ ++ V L+D+ + Sbjct: 48 GDKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQYFSTAVLENLEQQELVCLDDLQSVIG 107 Query: 122 NDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 ND +F + N I +LL+ +A P + V LPDL SRL + +++ D+ Sbjct: 108 NDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQLNSLTDEQ 167 Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237 +V+ R + + A +++ R+ R + + +D +D +L +T E Sbjct: 168 KVEVLQHTAYQRGFQLSDETANFLITRLARDMHTLFEALDLLDKASLQAQRNLTIPFVKE 227 Query: 238 VL 239 +L Sbjct: 228 IL 229 >gi|145629279|ref|ZP_01785078.1| hypothetical protein CGSHi22121_10765 [Haemophilus influenzae 22.1-21] gi|145639207|ref|ZP_01794814.1| hypothetical protein CGSHiII_04194 [Haemophilus influenzae PittII] gi|144978782|gb|EDJ88505.1| hypothetical protein CGSHi22121_10765 [Haemophilus influenzae 22.1-21] gi|145271769|gb|EDK11679.1| hypothetical protein CGSHiII_04194 [Haemophilus influenzae PittII] gi|309750783|gb|ADO80767.1| DNA replication initiation factor Had [Haemophilus influenzae R2866] Length = 231 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 44/182 (24%), Positives = 86/182 (47%), Gaps = 13/182 (7%) Query: 71 GPSGSGKSCLANIWSDK----SRSTRFSNIAKSL---DSIL--IDTRKPVLLEDIDLLDF 121 G GSGK+ L +S++ R+ + ++KS ++L ++ ++ V L+D+ + Sbjct: 48 GDKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQYFSTAVLENLEQQELVCLDDLQSVIG 107 Query: 122 NDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 ND +F + N I +LL+ +A P + V LPDL SRL + +++ D+ Sbjct: 108 NDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQLNSLTDEQ 167 Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237 KV+ R + + A +++ R+ R + + +D +D +L +T E Sbjct: 168 KIKVLQLAAYQRGFQLSDETANFLITRLARDMHTLFEALDLLDKASLQAQRNLTIPFVKE 227 Query: 238 VL 239 +L Sbjct: 228 IL 229 >gi|319776111|ref|YP_004138599.1| ATPase involved in DNA replication initiation [Haemophilus influenzae F3047] gi|317450702|emb|CBY86922.1| predicted ATPase involved in DNA replication initiation [Haemophilus influenzae F3047] Length = 231 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 44/182 (24%), Positives = 86/182 (47%), Gaps = 13/182 (7%) Query: 71 GPSGSGKSCLANIWSDK----SRSTRFSNIAKSL---DSIL--IDTRKPVLLEDIDLLDF 121 G GSGK+ L +S++ R+ + ++KS ++L ++ ++ V L+D+ + Sbjct: 48 GNKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQYFSTAVLENLEQQELVCLDDLQNVIG 107 Query: 122 NDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 ND +F + N I +LL+ +A P + V LPDL SRL + +++ D+ Sbjct: 108 NDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQLNSLTDEQ 167 Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237 KV+ R + + A +++ R+ R + + +D +D +L +T E Sbjct: 168 KIKVLQLAAYQRGFQLSDETANFLITRLARDMHTLFEALDLLDKASLQAQRNLTIPFVKE 227 Query: 238 VL 239 +L Sbjct: 228 IL 229 >gi|332288919|ref|YP_004419771.1| chromosomal replication initiation protein [Gallibacterium anatis UMN179] gi|330431815|gb|AEC16874.1| chromosomal replication initiation protein [Gallibacterium anatis UMN179] Length = 455 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 34/153 (22%), Positives = 68/153 (44%), Gaps = 11/153 (7%) Query: 92 RFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFP 148 +F +SLD++LID DI + + + FH NS+ + +++T+ +P Sbjct: 209 KFKKFYRSLDALLID--------DIQFFAGKEGSQEEFFHTFNSLFEGGRQIILTSDRYP 260 Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 L SR V I P+ + +++K + I + +++A +I Q++ + Sbjct: 261 KEIDKIEERLKSRFNWGLSVAIEPPELETRVAILLKKAEESNIVLPEEVAFFIGQKLRTN 320 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + E ++++ A G IT E LK+ Sbjct: 321 VRELEGALNRVSANANFTGQPITIDFVRETLKD 353 >gi|167624256|ref|YP_001674550.1| DNA replication initiation factor [Shewanella halifaxensis HAW-EB4] gi|167354278|gb|ABZ76891.1| Chromosomal replication initiator DnaA [Shewanella halifaxensis HAW-EB4] Length = 236 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 44/193 (22%), Positives = 86/193 (44%), Gaps = 23/193 (11%) Query: 66 VVILVGPSGSGKSCLANIW----SDKSRSTRFS--NIAKSLDSILIDTRKPVLLEDIDLL 119 V L GP SG++ L + +D RS+ + I S+ + L++ LE +DL+ Sbjct: 48 AVFLWGPEKSGRTHLMHAACAHANDLGRSSFYIPLGIHASISTALLEG-----LEKLDLV 102 Query: 120 DFNDTQ-----------LFHIINSI-HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 +D +F + N I Q SL+++A P G LPDL SR++ Sbjct: 103 CIDDVNAIAGHPLWEEAIFDLYNRISEQKTCSLIVSASVSPSDSGFSLPDLVSRMQWGLN 162 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 ++ D+ + + A R + + + + +++ R+ R L ++D++D ++ Sbjct: 163 YQLQPMADEEKLAALQRRAAMRGLQLPEDVGRFLLNRLARDLRTLFDVLDRLDKASMVHQ 222 Query: 228 MGITRSLAAEVLK 240 +T E+L+ Sbjct: 223 RKLTIPFIKEMLR 235 >gi|315659995|ref|ZP_07912853.1| DNA-directed DNA replication initiator protein [Staphylococcus lugdunensis M23590] gi|315494896|gb|EFU83233.1| DNA-directed DNA replication initiator protein [Staphylococcus lugdunensis M23590] Length = 467 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 30/138 (21%), Positives = 63/138 (45%), Gaps = 3/138 (2%) Query: 111 VLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 +L++DI + + + FH N +HQ + +++++ P L SR + + Sbjct: 230 LLIDDIQFIQNKEQTQEEFFHTFNELHQNNKQIVISSDRPPKEIAKLEDRLRSRFEWGLI 289 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 V I+ PD + ++ K + + I + YI +++ ++ E + ++ + +G Sbjct: 290 VDITPPDYETRMAILQKKMEEENLEIPMEALNYIANQIQSNIRELEGALTRLLAYSQLQG 349 Query: 228 MGITRSLAAEVLKETQQC 245 IT L AE LK+ Q Sbjct: 350 RPITTELTAEALKDIIQV 367 >gi|328773026|gb|EGF83063.1| hypothetical protein BATDEDRAFT_18251 [Batrachochytrium dendrobatidis JAM81] Length = 292 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 10/75 (13%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSW----------PSRVVILVGPSGSGKSCLANIWSDK 87 +S +D++ A +QA+R I P+ P+R V+L GP G+GK+ LA + + Sbjct: 16 VSWEDIVGLDAAKQALREIVVLPNLRPELFTGLRAPARGVLLFGPPGTGKTMLAKALAKE 75 Query: 88 SRSTRFSNIAKSLDS 102 S++T FS A +L S Sbjct: 76 SKATFFSISASTLTS 90 >gi|289551834|ref|YP_003472738.1| Chromosomal replication initiator protein DnaA [Staphylococcus lugdunensis HKU09-01] gi|289181365|gb|ADC88610.1| Chromosomal replication initiator protein DnaA [Staphylococcus lugdunensis HKU09-01] Length = 455 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 30/138 (21%), Positives = 63/138 (45%), Gaps = 3/138 (2%) Query: 111 VLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 +L++DI + + + FH N +HQ + +++++ P L SR + + Sbjct: 218 LLIDDIQFIQNKEQTQEEFFHTFNELHQNNKQIVISSDRPPKEIAKLEDRLRSRFEWGLI 277 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 V I+ PD + ++ K + + I + YI +++ ++ E + ++ + +G Sbjct: 278 VDITPPDYETRMAILQKKMEEENLEIPMEALNYIANQIQSNIRELEGALTRLLAYSQLQG 337 Query: 228 MGITRSLAAEVLKETQQC 245 IT L AE LK+ Q Sbjct: 338 RPITTELTAEALKDIIQV 355 >gi|302335416|ref|YP_003800623.1| ABC transporter related protein [Olsenella uli DSM 7084] gi|301319256|gb|ADK67743.1| ABC transporter related protein [Olsenella uli DSM 7084] Length = 580 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 19/140 (13%) Query: 51 QAVRLIDS--WPSWPSRVVILVGPSGSGKSC----LANIWSDKSRSTRFSNI-AKSLDSI 103 Q R++DS + + V LVGPSGSGKS A +W S + R + ++D Sbjct: 347 QGERVLDSVSFTAREGEVTALVGPSGSGKSTCARLAARLWDASSGTVRVGGVDVSTVDPE 406 Query: 104 LIDTRKPVLLEDIDLLDFNDTQLFHI-INSIHQYDSSLLMTART---------FPVSWGV 153 ++ V+ +D+ L F+DT + +I + D +L AR P + Sbjct: 407 VLLADYAVVFQDVTL--FDDTVMANIRLGRKDATDEEVLAAARAANCDGFVGQLPQGYDT 464 Query: 154 CLPDLCSRLKAATVVKISLP 173 + + SRL +IS+ Sbjct: 465 VIGENGSRLSGGERQRISIA 484 >gi|269925124|ref|YP_003321747.1| chromosomal replication initiator protein DnaA [Thermobaculum terrenum ATCC BAA-798] gi|269788784|gb|ACZ40925.1| chromosomal replication initiator protein DnaA [Thermobaculum terrenum ATCC BAA-798] Length = 456 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 34/159 (21%), Positives = 73/159 (45%), Gaps = 11/159 (6%) Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMT 143 + R+ F +S+D +LID DI + ++ + FH N +H + ++MT Sbjct: 203 EHRTEEFRARYRSIDILLID--------DIQFIAGKESTQEEFFHTFNHLHGANKQIVMT 254 Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203 + P + L SR + + +++LPD + ++ ++ + + + I + Sbjct: 255 SDRPPKAIATLQDRLRSRFEGGLMTEVNLPDLETRIAILRIKAENKGVDLPDDVLELIAR 314 Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +++ ++ E ++ + LA G IT + AAE L +T Sbjct: 315 KVQSNIRELEGALNSIVALARLTGEPITLATAAEALNDT 353 >gi|329123275|ref|ZP_08251843.1| DnaA regulatory inactivator Hda [Haemophilus aegyptius ATCC 11116] gi|327471484|gb|EGF16932.1| DnaA regulatory inactivator Hda [Haemophilus aegyptius ATCC 11116] Length = 236 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 44/182 (24%), Positives = 86/182 (47%), Gaps = 13/182 (7%) Query: 71 GPSGSGKSCLANIWSDK----SRSTRFSNIAKSL---DSIL--IDTRKPVLLEDIDLLDF 121 G GSGK+ L +S++ R+ + ++KS ++L ++ ++ V L+D+ + Sbjct: 53 GNKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQYFSTAVLENLEQQELVCLDDLQNVIG 112 Query: 122 NDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 ND +F + N I +LL+ +A P + V LPDL SRL + +++ D+ Sbjct: 113 NDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQLNSLTDEQ 172 Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237 KV+ R + + A +++ R+ R + + +D +D +L +T E Sbjct: 173 KIKVLQLAAYQRGFQLSDETANFLITRLARDMHTLFEALDLLDKASLQAQRNLTIPFVKE 232 Query: 238 VL 239 +L Sbjct: 233 IL 234 >gi|242399236|ref|YP_002994660.1| ABC-type cobalt transport system, ATPase component [Thermococcus sibiricus MM 739] gi|242265629|gb|ACS90311.1| ABC-type cobalt transport system, ATPase component [Thermococcus sibiricus MM 739] Length = 262 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 27/109 (24%), Positives = 54/109 (49%), Gaps = 19/109 (17%) Query: 45 VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL 104 V++ + A+R +D + + +V LVGP+GSGK+ L AK L+ +L Sbjct: 10 VYNGKKAAIRGVDL--TIGNEIVALVGPNGSGKTTL----------------AKHLNGLL 51 Query: 105 IDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTF-PVSWG 152 T+ V+++ +D +++ +L ++ + Q ++ F VS+G Sbjct: 52 KPTKGNVVVDGMDTREYSVAELARVVGYVFQNPENMFFEENVFKEVSFG 100 >gi|145636912|ref|ZP_01792577.1| DNA replication initiation factor [Haemophilus influenzae PittHH] gi|145269993|gb|EDK09931.1| DNA replication initiation factor [Haemophilus influenzae PittHH] Length = 231 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 44/182 (24%), Positives = 86/182 (47%), Gaps = 13/182 (7%) Query: 71 GPSGSGKSCLANIWSDK----SRSTRFSNIAKSL---DSIL--IDTRKPVLLEDIDLLDF 121 G GSGK+ L +S++ R+ + ++KS ++L ++ ++ V L+D+ + Sbjct: 48 GDKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQYFSTAVLENLEQQELVCLDDLQSVIG 107 Query: 122 NDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 ND +F + N I +LL+ +A P + V LPDL SRL + +++ D+ Sbjct: 108 NDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQLNSLTDEQ 167 Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237 KV+ R + + A +++ R+ R + K +D +D +L +T + Sbjct: 168 KIKVLQLAAYQRGFQLSDETANFLITRLARDMHTLFKALDLLDKASLQAQRNLTIPFVKK 227 Query: 238 VL 239 +L Sbjct: 228 IL 229 >gi|113461486|ref|YP_719555.1| DNA replication initiation factor [Haemophilus somnus 129PT] gi|112823529|gb|ABI25618.1| regulatory inactivation of DnaA Hda protein [Haemophilus somnus 129PT] Length = 231 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 28/116 (24%), Positives = 58/116 (50%), Gaps = 1/116 (0%) Query: 126 LFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 +F ++N I + S+LL+ +A PV+ + LPDL SRL + +++ ++ +VI + Sbjct: 115 IFDLMNRIKESGSTLLLISANQSPVNLNISLPDLASRLSWGEIYQLNPLNEQQKVEVIKR 174 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 R I + A ++++R++R + + +D +L +T E+L Sbjct: 175 NAHQRGIELPDDTANFLLKRLDRDIKSLFDTLTLLDKASLQAQRKLTIPFVKEILN 230 >gi|161525794|ref|YP_001580806.1| DnaA regulatory inactivator Hda [Burkholderia multivorans ATCC 17616] gi|160343223|gb|ABX16309.1| DnaA regulatory inactivator Hda [Burkholderia multivorans ATCC 17616] Length = 315 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 46/182 (25%), Positives = 79/182 (43%), Gaps = 6/182 (3%) Query: 63 PSRVVILVGPSGSGKS-CLANIWSDKSRS-TRFSNIAKSLDSILIDTRKPVL-LEDIDLL 119 P R + G GSG+S L + SD S R+ L + D R + ++D D + Sbjct: 117 PDRSFYIWGEPGSGRSHLLQALVSDASYGYARYLTPQSPLGAFTFDPRIGIYAIDDCDRM 176 Query: 120 -DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178 D LF++ N + + SS + A DL +RL V +S P D Sbjct: 177 SDTQQVALFNLFNEVRAHPSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLS-PLSDAG 235 Query: 179 EKVIVKMFA-DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237 + ++++ A +R I + +AAY++ R + L+D +D +L + +T L Sbjct: 236 KIDVLRLAAKERGITLTDDVAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRR 295 Query: 238 VL 239 +L Sbjct: 296 ML 297 >gi|218667999|ref|YP_002426314.1| hypothetical protein AFE_1901 [Acidithiobacillus ferrooxidans ATCC 23270] gi|218520212|gb|ACK80798.1| conserved hypothetical protein [Acidithiobacillus ferrooxidans ATCC 23270] Length = 236 Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 62/155 (40%), Gaps = 14/155 (9%) Query: 67 VILVGPSGSGKS-------CLANIWS---DKSRSTRFSNIAKSLDSILIDTRKPVL-LED 115 + L GP G GKS W+ D + N K L+ P+L L++ Sbjct: 45 LYLYGPGGVGKSHLLLGAASALAGWTPYMDCGDVPQLFNRIKDLEGFSSLVAAPLLCLDN 104 Query: 116 IDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 I++ +T LF + N +L+ R P LPD SR A V + L Sbjct: 105 IEVWAGQRDKETFLFDLYNERMSNGRPMLLAGRAAPRFLDWALPDWASRASACLQVALRL 164 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER 207 PDD ++ +M R + I + A Y+++ R Sbjct: 165 PDDTERMAILQEMAQRRGLQIGVEAAHYLLRHHAR 199 >gi|198283684|ref|YP_002220005.1| DnaA regulatory inactivator Hda [Acidithiobacillus ferrooxidans ATCC 53993] gi|198248205|gb|ACH83798.1| DnaA regulatory inactivator Hda [Acidithiobacillus ferrooxidans ATCC 53993] Length = 237 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 62/155 (40%), Gaps = 14/155 (9%) Query: 67 VILVGPSGSGKS-------CLANIWS---DKSRSTRFSNIAKSLDSILIDTRKPVL-LED 115 + L GP G GKS W+ D + N K L+ P+L L++ Sbjct: 46 LYLYGPGGVGKSHLLLGAASALAGWTPYMDCGDVPQLFNRIKDLEGFSSLVAAPLLCLDN 105 Query: 116 IDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 I++ +T LF + N +L+ R P LPD SR A V + L Sbjct: 106 IEVWAGQRDKETFLFDLYNERMSNGRPMLLAGRAAPRFLDWALPDWASRASACLQVALRL 165 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER 207 PDD ++ +M R + I + A Y+++ R Sbjct: 166 PDDTERMAILQEMAQRRGLQIGVEAAHYLLRHHAR 200 >gi|148827064|ref|YP_001291817.1| DNA replication initiation factor [Haemophilus influenzae PittGG] gi|148718306|gb|ABQ99433.1| DNA replication initiation factor [Haemophilus influenzae PittGG] Length = 185 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 44/183 (24%), Positives = 87/183 (47%), Gaps = 13/183 (7%) Query: 70 VGPSGSGKSCLANIWSDK----SRSTRFSNIAKSL---DSIL--IDTRKPVLLEDIDLLD 120 +G GSGK+ L +S++ R+ + ++KS ++L ++ ++ V L+D+ + Sbjct: 1 MGNKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQYFSTAVLENLEQQELVCLDDLQSVI 60 Query: 121 FNDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 ND +F + N I +LL+ +A P + V LPDL SRL + +++ D+ Sbjct: 61 GNDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQLNSLTDE 120 Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236 KV+ R + + A +++ R+ R + + +D +D +L +T Sbjct: 121 QKIKVLQLAAYQRGFQLSDETANFLITRLARDMHTLFEALDLLDKASLQAQRNLTIPFVK 180 Query: 237 EVL 239 E+L Sbjct: 181 EIL 183 >gi|239637286|ref|ZP_04678273.1| chromosomal replication initiator protein DnaA [Staphylococcus warneri L37603] gi|239597123|gb|EEQ79633.1| chromosomal replication initiator protein DnaA [Staphylococcus warneri L37603] Length = 454 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 30/138 (21%), Positives = 63/138 (45%), Gaps = 3/138 (2%) Query: 111 VLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 +L++DI + + + FH N +H + +++++ P L SR + + Sbjct: 217 LLIDDIQFIQNKEQTQEEFFHTFNELHNNNKQIVISSDRPPKEISKLSDRLRSRFEWGLI 276 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 V I+ PD + ++ K + + I + YI +++ ++ E + ++ + +G Sbjct: 277 VDITPPDYETRMAILQKKIEEENLDIPMESLNYIANQIQSNIRELEGALTRLLAYSQLQG 336 Query: 228 MGITRSLAAEVLKETQQC 245 IT LAAE LK+ Q Sbjct: 337 KPITTELAAEALKDIIQA 354 >gi|330685249|gb|EGG96910.1| chromosomal replication initiator protein DnaA [Staphylococcus epidermidis VCU121] Length = 454 Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust. Identities = 30/138 (21%), Positives = 63/138 (45%), Gaps = 3/138 (2%) Query: 111 VLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 +L++DI + + + FH N +H + +++++ P L SR + + Sbjct: 217 LLIDDIQFIQNKEQTQEEFFHTFNELHNNNKQIVISSDRPPKEISKLSDRLRSRFEWGLI 276 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 V I+ PD + ++ K + + I + YI +++ ++ E + ++ + +G Sbjct: 277 VDITPPDYETRMAILQKKIEEENLDIPMESLNYIANQIQSNIRELEGALTRLLAYSQLQG 336 Query: 228 MGITRSLAAEVLKETQQC 245 IT LAAE LK+ Q Sbjct: 337 KPITTELAAEALKDIIQA 354 >gi|319896920|ref|YP_004135115.1| atpase regulatory factor involved in dnaa inactivation [Haemophilus influenzae F3031] gi|317432424|emb|CBY80779.1| ATPase regulatory factor involved in DnaA inactivation [Haemophilus influenzae F3031] Length = 231 Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust. Identities = 44/182 (24%), Positives = 85/182 (46%), Gaps = 13/182 (7%) Query: 71 GPSGSGKSCLANIWSDK----SRSTRFSNIAKSL---DSIL--IDTRKPVLLEDIDLLDF 121 G GSGK+ L +S++ R+ + ++KS ++L ++ + V L+D+ + Sbjct: 48 GNKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQYFSTAVLENLEQQALVCLDDLQSVIG 107 Query: 122 NDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 ND +F + N I +LL+ +A P + V LPDL SRL + +++ D+ Sbjct: 108 NDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQLNSLTDEQ 167 Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237 KV+ R + + A +++ R+ R + + +D +D +L +T E Sbjct: 168 KIKVLQLAAYQRGFQLSDETANFLITRLARDMHTLFEALDLLDKASLQAQRNLTIPFVKE 227 Query: 238 VL 239 +L Sbjct: 228 IL 229 >gi|289762735|ref|ZP_06522113.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis GM 1503] gi|289710241|gb|EFD74257.1| glutamine-transport ATP-binding protein ABC transporter glnQ [Mycobacterium tuberculosis GM 1503] Length = 215 Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 7/67 (10%) Query: 37 GISRDDLLV-HSAIEQAVRLID--SWPSWPSRVVILVGPSGSGK----SCLANIWSDKSR 89 G++ DL+V +S+ AVR ID S P +VIL+GPSG GK SCL I KS Sbjct: 3 GLTISDLVVEYSSGGYAVRPIDGLSLDVAPGSLVILLGPSGCGKTTLLSCLGGILRPKSG 62 Query: 90 STRFSNI 96 S +F ++ Sbjct: 63 SIKFDDV 69 >gi|221200988|ref|ZP_03574028.1| DnaA regulatory inactivator Hda [Burkholderia multivorans CGD2M] gi|221206560|ref|ZP_03579573.1| DnaA regulatory inactivator Hda [Burkholderia multivorans CGD2] gi|221214417|ref|ZP_03587388.1| DnaA regulatory inactivator Hda [Burkholderia multivorans CGD1] gi|221165674|gb|EED98149.1| DnaA regulatory inactivator Hda [Burkholderia multivorans CGD1] gi|221173869|gb|EEE06303.1| DnaA regulatory inactivator Hda [Burkholderia multivorans CGD2] gi|221178838|gb|EEE11245.1| DnaA regulatory inactivator Hda [Burkholderia multivorans CGD2M] Length = 244 Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust. Identities = 47/183 (25%), Positives = 78/183 (42%), Gaps = 8/183 (4%) Query: 63 PSRVVILVGPSGSGKS-CLANIWSDKSRS-TRFSNIAKSLDSILIDTRKPVL-LEDIDLL 119 P R + G GSG+S L + SD S R+ L + D R + ++D D + Sbjct: 46 PDRSFYIWGEPGSGRSHLLQALVSDASYGYARYLTPQSPLGAFAFDPRIGIYAIDDCDRM 105 Query: 120 DFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 +DTQ LF++ N + + SS + A DL +RL V +S D Sbjct: 106 --SDTQQVALFNLFNEVRAHPSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLSPLSDA 163 Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236 +V+ +R I + +AAY++ R + L+D +D +L + +T L Sbjct: 164 GKIEVLRLAAKERGITLTDDVAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLR 223 Query: 237 EVL 239 +L Sbjct: 224 RML 226 >gi|228470045|ref|ZP_04054956.1| chromosomal replication initiator protein DnaA [Porphyromonas uenonis 60-3] gi|228308319|gb|EEK17168.1| chromosomal replication initiator protein DnaA [Porphyromonas uenonis 60-3] Length = 475 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 37/202 (18%), Positives = 83/202 (41%), Gaps = 33/202 (16%) Query: 69 LVGPSGSGKSCLAN---------------------------IWSDKSRSTR-FSNIAKSL 100 + GPSG GK+ L + + + ++ +T F N + + Sbjct: 179 IYGPSGVGKTHLCHAIGLRIRELYPELKVLYVSSHMFEMQYVAATRANTTNDFINFYQQV 238 Query: 101 DSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 D +LID + ++ + L F F + N ++ +++T+ T PV+ L S Sbjct: 239 DVLLIDDIQGLIAKKKTQLTF-----FQVFNHLYMLGKQIVLTSDTAPVNLAGLEERLIS 293 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 R+ + +++ PD D ++ + + + +++ YI + + S+ + + + Sbjct: 294 RIAGSLTIEVERPDYDLRKEYLRHKSEESGSILPREMIDYIARTVTSSIRGLQGVFFSLI 353 Query: 221 NLALSRGMGITRSLAAEVLKET 242 A G IT S +++ +T Sbjct: 354 TRAAVEGCDITSSFVKKIVSQT 375 >gi|170718408|ref|YP_001783630.1| DNA replication initiation factor [Haemophilus somnus 2336] gi|168826537|gb|ACA31908.1| Chromosomal replication initiator DnaA [Haemophilus somnus 2336] Length = 231 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 28/116 (24%), Positives = 58/116 (50%), Gaps = 1/116 (0%) Query: 126 LFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 +F ++N I + S+LL+ +A PV+ + LPDL SRL + +++ ++ +VI + Sbjct: 115 IFDLMNRIKESGSTLLLISANQSPVNLNISLPDLASRLSWGEIYQLNPLNEQQKVEVIKR 174 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 R I + A ++++R++R + + +D +L +T E+L Sbjct: 175 NAHQRGIELPDDTANFLLKRLDRDIKSLFDTLTLLDKASLQAQRKLTIPFVKEILN 230 >gi|312200584|ref|YP_004020645.1| ABC transporter [Frankia sp. EuI1c] gi|311231920|gb|ADP84775.1| ABC transporter related protein [Frankia sp. EuI1c] Length = 239 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 6/82 (7%) Query: 62 WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNI--AKSLDSILIDTRKPVLLEDIDLL 119 WP V + GPSGSGKS L NI + R+ S + +SL L +TR L + Sbjct: 40 WPGEFVAVTGPSGSGKSTLLNIIAGLERADGGSVVVAGQSLAE-LSETRLARLRRRHVGM 98 Query: 120 DFNDTQLFHIINSIHQYDSSLL 141 F Q FH++ S+ D+ +L Sbjct: 99 VF---QFFHLLESMTAADNVVL 117 >gi|282853039|ref|ZP_06262376.1| chromosomal replication initiator protein DnaA [Propionibacterium acnes J139] gi|282582492|gb|EFB87872.1| chromosomal replication initiator protein DnaA [Propionibacterium acnes J139] Length = 500 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 11/157 (7%) Query: 88 SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTA 144 +R+T F + +D +L+D DI L + FH N++H ++MT+ Sbjct: 248 NRTTEFRRSYRDVDVLLVD--------DIQFLQSKIQTQEEFFHTFNTLHNAQKQIVMTS 299 Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 P P L SR + + I PD + ++ + A +I ++ + +I R Sbjct: 300 DRPPKLLEALEPRLRSRFEWGLLTDIQPPDLETRIAILRRKVAAEKITVEPDVLEFIASR 359 Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++ ++ E + ++ A + SLA VLK+ Sbjct: 360 IQTNIRELEGALIRVTAFASLNQQSVDISLAEVVLKD 396 >gi|194467403|ref|ZP_03073390.1| chromosomal replication initiator protein DnaA [Lactobacillus reuteri 100-23] gi|194454439|gb|EDX43336.1| chromosomal replication initiator protein DnaA [Lactobacillus reuteri 100-23] Length = 440 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 3/133 (2%) Query: 111 VLLEDIDLL-DFNDTQL--FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 +L++DI L + TQL F+ N++H ++MT+ P L SR + Sbjct: 205 LLIDDIQFLANKEGTQLEFFNTFNALHDRKKQIVMTSDRIPNEIPELQDRLVSRFRWGLT 264 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 V+I+ PD + ++ + I I YI +++ ++ E + K+ A G Sbjct: 265 VEITPPDLETRIAILRSKVEEDHIDIGNDTLNYIAGQIDTNIRELEGALTKVQAFANLSG 324 Query: 228 MGITRSLAAEVLK 240 IT SLA++ LK Sbjct: 325 ERITPSLASQALK 337 >gi|227543719|ref|ZP_03973768.1| DNA-directed DNA replication initiator protein [Lactobacillus reuteri CF48-3A] gi|300908784|ref|ZP_07126247.1| DNA-directed DNA replication initiator protein [Lactobacillus reuteri SD2112] gi|154705516|gb|ABS84184.1| chromosomal replication initiator protein DnaA [Lactobacillus reuteri] gi|227186287|gb|EEI66358.1| DNA-directed DNA replication initiator protein [Lactobacillus reuteri CF48-3A] gi|300894191|gb|EFK87549.1| DNA-directed DNA replication initiator protein [Lactobacillus reuteri SD2112] Length = 440 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 3/133 (2%) Query: 111 VLLEDIDLL-DFNDTQL--FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 +L++DI L + TQL F+ N++H ++MT+ P L SR + Sbjct: 205 LLIDDIQFLANKEGTQLEFFNTFNALHDRKKQIVMTSDRIPNEIPELQDRLVSRFRWGLT 264 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 V+I+ PD + ++ + I I YI +++ ++ E + K+ A G Sbjct: 265 VEITPPDLETRIAILRSKVEEDHIDIGNDTLNYIAGQIDTNIRELEGALTKVQAFANLSG 324 Query: 228 MGITRSLAAEVLK 240 IT SLA++ LK Sbjct: 325 ERITPSLASQALK 337 >gi|78485860|ref|YP_391785.1| Lipid A export ATP-binding/permease protein MsbA [Thiomicrospira crunogena XCL-2] gi|122064529|sp|Q31FG2|MSBA_THICR RecName: Full=Lipid A export ATP-binding/permease protein MsbA gi|78364146|gb|ABB42111.1| Lipid A export ATP-binding/permease protein MsbA [Thiomicrospira crunogena XCL-2] Length = 581 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 16/101 (15%) Query: 61 SWPSR-VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAK---SLDSILIDT------RKP 110 S P+R LVG SGSGK+ LAN+ TRF + ++D I +D R Sbjct: 362 SIPARKTTALVGQSGSGKTTLANLI------TRFYQVNHGTITIDGIALDEIELNNLRAN 415 Query: 111 VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSW 151 + +++ FNDT +I +YD +M A +W Sbjct: 416 IAFVSQNVVLFNDTIAANIAYGHEEYDEQAIMNAAKAAHAW 456 >gi|148543244|ref|YP_001270614.1| chromosomal replication initiation protein [Lactobacillus reuteri DSM 20016] gi|184152656|ref|YP_001840997.1| chromosomal replication initiation protein [Lactobacillus reuteri JCM 1112] gi|227364307|ref|ZP_03848400.1| DNA-directed DNA replication initiator protein [Lactobacillus reuteri MM2-3] gi|325683506|ref|ZP_08163022.1| DNA-directed DNA replication initiator protein DnaA [Lactobacillus reuteri MM4-1A] gi|167016901|sp|A5VHF3|DNAA_LACRD RecName: Full=Chromosomal replication initiator protein DnaA gi|226735822|sp|B2G4Y5|DNAA_LACRJ RecName: Full=Chromosomal replication initiator protein DnaA gi|148530278|gb|ABQ82277.1| chromosomal replication initiator protein DnaA [Lactobacillus reuteri DSM 20016] gi|183224000|dbj|BAG24517.1| chromosomal replication initiator protein DnaA [Lactobacillus reuteri JCM 1112] gi|227070620|gb|EEI08950.1| DNA-directed DNA replication initiator protein [Lactobacillus reuteri MM2-3] gi|324977856|gb|EGC14807.1| DNA-directed DNA replication initiator protein DnaA [Lactobacillus reuteri MM4-1A] Length = 440 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 3/133 (2%) Query: 111 VLLEDIDLL-DFNDTQL--FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 +L++DI L + TQL F+ N++H ++MT+ P L SR + Sbjct: 205 LLIDDIQFLANKEGTQLEFFNTFNALHDRKKQIVMTSDRIPNEIPELQDRLVSRFRWGLT 264 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 V+I+ PD + ++ + I I YI +++ ++ E + K+ A G Sbjct: 265 VEITPPDLETRIAILRSKVEEDHIDIGNDTLNYIAGQIDTNIRELEGALTKVQAFANLSG 324 Query: 228 MGITRSLAAEVLK 240 IT SLA++ LK Sbjct: 325 ERITPSLASQALK 337 >gi|260885410|ref|ZP_05734994.2| bacterial DnaA protein helix-turn-helix protein [Prevotella tannerae ATCC 51259] gi|260852301|gb|EEX72170.1| bacterial DnaA protein helix-turn-helix protein [Prevotella tannerae ATCC 51259] Length = 460 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 22/128 (17%) Query: 69 LVGPSGSGKSCLAN------IWSDKSRSTRF--SNIAKS--LDSILIDTRKPVL--LEDI 116 L GPSG GK+ L N + S R + +++ K+ DS+L +T + + I Sbjct: 165 LYGPSGVGKTHLVNAIGLRILESQPERRVLYVPAHLFKTQYTDSVLHNTINDFIHFYQTI 224 Query: 117 DLLDFNDTQ----------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 D+L +D Q FHI N + Q +++T PV + + +R K T Sbjct: 225 DVLIIDDIQEITTAKTQQAFFHIFNHLQQNGRQIIITCDRAPVDFEGIEERMLTRFKWGT 284 Query: 167 VVKISLPD 174 V ++ PD Sbjct: 285 VTEMEKPD 292 >gi|170717207|ref|YP_001783356.1| chromosomal replication initiation protein [Haemophilus somnus 2336] gi|168825336|gb|ACA30707.1| chromosomal replication initiator protein DnaA [Haemophilus somnus 2336] Length = 455 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 38/182 (20%), Positives = 79/182 (43%), Gaps = 13/182 (7%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL--- 119 P V+ + +S + + SD+ S F +++D++LID DI Sbjct: 182 PHAQVVYMHAERFMQSYVKALKSDRMDS--FKRFYRTVDALLID--------DIQFFAGK 231 Query: 120 DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179 D + FHI NS+ + +++T+ +P L SR V I P+ + Sbjct: 232 DGTQEEFFHIFNSLFERGRQIILTSDRYPKEIEKIEDRLKSRFGWGISVAIEPPELETRV 291 Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 +++K ++ + + +++A +I ++ ++ E ++++ A G IT E L Sbjct: 292 AILLKKAEEKNMVLPEEVAMFIGGKLRTNVRELEGALNRVHAHAEFTGKAITIDFVRETL 351 Query: 240 KE 241 K+ Sbjct: 352 KD 353 >gi|319785621|ref|YP_004145096.1| chromosomal replication initiator protein DnaA [Pseudoxanthomonas suwonensis 11-1] gi|317464133|gb|ADV25865.1| chromosomal replication initiator protein DnaA [Pseudoxanthomonas suwonensis 11-1] Length = 445 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 34/153 (22%), Positives = 63/153 (41%), Gaps = 11/153 (7%) Query: 92 RFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFP 148 +F + +D++LID DI D + FH NS+ ++MT +P Sbjct: 199 QFKRQFQQIDALLID--------DIQFFAGKDRTQEEFFHTFNSLFDSRQQIIMTCDRYP 250 Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 P L SRL V I PD + +++ +R + ++A + ++M + Sbjct: 251 REVDGLEPRLKSRLAWGLSVAIDPPDFETRAAIVLAKARERGTVVPDEVAFLLAKKMRSN 310 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + E ++ + A G I+ A E L++ Sbjct: 311 VRDLEGALNTLAARANFTGRAISVEFAQETLRD 343 >gi|330791557|ref|XP_003283859.1| hypothetical protein DICPUDRAFT_147573 [Dictyostelium purpureum] gi|325086245|gb|EGC39638.1| hypothetical protein DICPUDRAFT_147573 [Dictyostelium purpureum] Length = 851 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 1/60 (1%) Query: 54 RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS-NIAKSLDSILIDTRKPVL 112 +L++S+ P + ++L GP G+GK+ LA I S+++ +T F+ N A LD T K +L Sbjct: 319 KLLNSFGIKPPKGILLYGPPGTGKTLLARIVSNQTNATLFTINGADILDKFYGMTEKTLL 378 >gi|227530356|ref|ZP_03960405.1| ABC superfamily ATP binding cassette transporter ABC protein [Lactobacillus vaginalis ATCC 49540] gi|227349717|gb|EEJ40008.1| ABC superfamily ATP binding cassette transporter ABC protein [Lactobacillus vaginalis ATCC 49540] Length = 290 Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust. Identities = 40/180 (22%), Positives = 86/180 (47%), Gaps = 23/180 (12%) Query: 58 SWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS--------NIAKSLDSILIDTRK 109 S+ P+++ L+G +G+GKS L N+ S++ T S N ++LD I + Sbjct: 24 SFTLEPAKIYGLLGRNGAGKSTLLNLISNRIFPTSGSIKLGDQEVNTDQTLDKIFLIGED 83 Query: 110 PVLLEDIDLLDFNDTQLFHIINSIH---QYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 + + + + Q+F + + + Y ++ M + F + L + K A Sbjct: 84 NLYYKQVKI-----NQMFDLADGAYGNFDYQNAEQML-KQFELDGNQKFAKLSTGQKTAA 137 Query: 167 VVKISL---PDDDFLEKVIVKMFAD-RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 + ++L D FL++ ++ + A+ R+IF + + +Y Q+ R++V + L+D++ L Sbjct: 138 KISLALNVDADYIFLDEPVLGLDANHREIFYQELIKSY--QKRPRTIVLSTHLIDEIQQL 195 >gi|113460282|ref|YP_718341.1| chromosomal replication initiation protein [Haemophilus somnus 129PT] gi|123031085|sp|Q0I0Y7|DNAA_HAES1 RecName: Full=Chromosomal replication initiator protein DnaA gi|112822325|gb|ABI24414.1| chromosomal replication initiator protein DnaA [Haemophilus somnus 129PT] Length = 452 Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust. Identities = 33/156 (21%), Positives = 68/156 (43%), Gaps = 11/156 (7%) Query: 89 RSTRFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTAR 145 R F +++D++LID DI D + FHI NS+ + +++T+ Sbjct: 203 RMDSFKRFYRTVDALLID--------DIQFFAGKDGTQEEFFHIFNSLFERGRQIILTSD 254 Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 +P L SR V I P+ + +++K ++ + + +++A +I ++ Sbjct: 255 RYPKEIEKIEDRLKSRFGWGISVAIEPPELETRVAILLKKAEEKNMVLPEEVAMFIGGKL 314 Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++ E ++++ A G IT E LK+ Sbjct: 315 RTNVRELEGALNRVHAHAEFTGKAITIDFVRETLKD 350 >gi|314922677|gb|EFS86508.1| replication initiator protein DnaA [Propionibacterium acnes HL001PA1] gi|314982903|gb|EFT26995.1| replication initiator protein DnaA [Propionibacterium acnes HL110PA3] gi|315091209|gb|EFT63185.1| replication initiator protein DnaA [Propionibacterium acnes HL110PA4] gi|315094443|gb|EFT66419.1| replication initiator protein DnaA [Propionibacterium acnes HL060PA1] gi|315105163|gb|EFT77139.1| replication initiator protein DnaA [Propionibacterium acnes HL050PA2] gi|327328938|gb|EGE70698.1| DNA-directed DNA replication initiator protein [Propionibacterium acnes HL103PA1] Length = 474 Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust. Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 11/157 (7%) Query: 88 SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTA 144 +R+T F + +D +L+D DI L + FH N++H ++MT+ Sbjct: 222 NRTTEFRRSYRDVDVLLVD--------DIQFLQSKIQTQEEFFHTFNTLHNAQKQIVMTS 273 Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 P P L SR + + I PD + ++ + A +I ++ + +I R Sbjct: 274 DRPPKLLEALEPRLRSRFEWGLLTDIQPPDLETRIAILRRKVAAEKITVEPDVLEFIASR 333 Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++ ++ E + ++ A + SLA VLK+ Sbjct: 334 IQTNIRELEGALIRVTAFASLNQQSVDISLAEVVLKD 370 >gi|189349485|ref|YP_001945113.1| DnaA regulatory inactivator Hda [Burkholderia multivorans ATCC 17616] gi|189333507|dbj|BAG42577.1| similar to chromosomal replication initiator protein DnaA [Burkholderia multivorans ATCC 17616] Length = 244 Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust. Identities = 48/184 (26%), Positives = 82/184 (44%), Gaps = 10/184 (5%) Query: 63 PSRVVILVGPSGSGKS-CLANIWSDKSRS-TRFSNIAKSLDSILIDTRKPVL-LEDIDLL 119 P R + G GSG+S L + SD S R+ L + D R + ++D D + Sbjct: 46 PDRSFYIWGEPGSGRSHLLQALVSDASYGYARYLTPQSPLGAFTFDPRIGIYAIDDCDRM 105 Query: 120 DFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 +DTQ LF++ N + + SS + A DL +RL V +S P D Sbjct: 106 --SDTQQVALFNLFNEVRAHPSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLS-PLSD 162 Query: 177 FLEKVIVKMFA-DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235 + ++++ A +R I + +AAY++ R + L+D +D +L + +T L Sbjct: 163 AGKIDVLRLAAKERGITLTDDVAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLL 222 Query: 236 AEVL 239 +L Sbjct: 223 RRML 226 >gi|327457414|gb|EGF04069.1| replication initiator protein DnaA [Propionibacterium acnes HL092PA1] Length = 500 Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust. Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 11/157 (7%) Query: 88 SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTA 144 +R+T F + +D +L+D DI L + FH N++H ++MT+ Sbjct: 248 NRTTEFRRSYRDVDVLLVD--------DIQFLQSKIQTQEEFFHTFNTLHNAQKQIVMTS 299 Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 P P L SR + + I PD + ++ + A +I ++ + +I R Sbjct: 300 DRPPKLLEALEPRLRSRFEWGLLTDIQPPDLETRIAILRRKVAAEKITVEPDVLEFIASR 359 Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++ ++ E + ++ A + SLA VLK+ Sbjct: 360 IQTNIRELEGALIRVTAFASLNQQPVDISLAEVVLKD 396 >gi|311695769|gb|ADP98642.1| urea ABC transporter, ATP-binding protein UrtD [marine bacterium HP15] Length = 274 Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust. Identities = 38/182 (20%), Positives = 71/182 (39%), Gaps = 13/182 (7%) Query: 69 LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFH 128 ++GP+G+GK+ + +I + K+R S S ++L + I F +F Sbjct: 62 IIGPNGAGKTTMMDIITGKTRPDTGSVWFGSRHNLLTMNEPDIASLGIGR-KFQKPTVFE 120 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR------------LKAATVVKISLPDDD 176 + + ++ R FP + + R L+ +S Sbjct: 121 ALTVFENLELAMATDKRVFPTLTAIMKAEYRDRIDEVLEMIGLESLRDRLACILSHGQKQ 180 Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236 +LE ++ M R + +D+ +A Q MER+ L K + + MG RS+A Sbjct: 181 WLEIGMLLMQKPRLLLVDEPVAGMTEQEMERTAELLTSLAGKQSVVVVEHDMGFVRSIAR 240 Query: 237 EV 238 +V Sbjct: 241 KV 242 >gi|332288487|ref|YP_004419339.1| DNA replication initiation factor [Gallibacterium anatis UMN179] gi|330431383|gb|AEC16442.1| DNA replication initiation factor [Gallibacterium anatis UMN179] Length = 253 Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust. Identities = 28/118 (23%), Positives = 57/118 (48%), Gaps = 1/118 (0%) Query: 123 DTQLFHIINSIHQYDSSLL-MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 + +F + N I + +LL M+A P + LPDL SRL +++ DD V Sbjct: 134 EVAIFDLFNRIKETGKTLLLMSADQPPQQLPIKLPDLRSRLSWGETYQLAELSDDKKAAV 193 Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + + + + + ++A +++ R++R L + +++K+D +L +T E L Sbjct: 194 LQQAARKQGLELPDEVAKFLLNRLDRDLTYLFSVLEKLDKASLQAQRKLTIPFVKEQL 251 >gi|314926333|gb|EFS90164.1| replication initiator protein DnaA [Propionibacterium acnes HL036PA3] Length = 500 Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust. Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 11/157 (7%) Query: 88 SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTA 144 +R+T F + +D +L+D DI L + FH N++H ++MT+ Sbjct: 248 NRTTEFRRSYRDVDVLLVD--------DIQFLQSKIQTQEEFFHTFNTLHNAQKQIVMTS 299 Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 P P L SR + + I PD + ++ + A +I ++ + +I R Sbjct: 300 DRPPKLLEALEPRLRSRFEWGLLTDIQPPDLETRIAILRRKVAAEKITVEPDVLEFIASR 359 Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++ ++ E + ++ A + SLA VLK+ Sbjct: 360 IQTNIRELEGALIRVTAFASLNQQPVDISLAEVVLKD 396 >gi|270158123|ref|ZP_06186780.1| DnaA regulatory inactivator Hda [Legionella longbeachae D-4968] gi|289163612|ref|YP_003453750.1| ATPase regulatory factor involved in DnaA inactivation [Legionella longbeachae NSW150] gi|269990148|gb|EEZ96402.1| DnaA regulatory inactivator Hda [Legionella longbeachae D-4968] gi|288856785|emb|CBJ10596.1| ATPase regulatory factor involved in DnaA inactivation [Legionella longbeachae NSW150] Length = 230 Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust. Identities = 42/192 (21%), Positives = 82/192 (42%), Gaps = 18/192 (9%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID---LLD 120 +R++ L G SGSGKS L + + A L L+ P +E I+ L+ Sbjct: 41 NRLLYLWGVSGSGKSHLLQA---CCQEVNLTQSAIYLPLALLKEWGPQTIEGIEDQTLIC 97 Query: 121 FNDTQ-----------LFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVV 168 +D LFH+ N + + ++L+ + P + + LPDL SRL V+ Sbjct: 98 IDDIHIIATDSIWEEALFHLYNKVKDSERNILIISGNQSPATIPIKLPDLRSRLSWGLVI 157 Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228 ++ DD + R + + +++ R R++ +++++D+ +L+ Sbjct: 158 QLMELDDQDKINTLKHHALKRGFDLPDSVGQFLLNRCSRNMHDLHHILNRLDDASLAAQR 217 Query: 229 GITRSLAAEVLK 240 IT ++L Sbjct: 218 KITIPFVKDILN 229 >gi|50841497|ref|YP_054724.1| chromosomal replication initiator protein DnaA [Propionibacterium acnes KPA171202] gi|289424325|ref|ZP_06426108.1| chromosomal replication initiator protein DnaA [Propionibacterium acnes SK187] gi|289427361|ref|ZP_06429074.1| chromosomal replication initiator protein DnaA [Propionibacterium acnes J165] gi|295129530|ref|YP_003580193.1| chromosomal replication initiator protein DnaA [Propionibacterium acnes SK137] gi|61212561|sp|Q6ABL5|DNAA_PROAC RecName: Full=Chromosomal replication initiator protein DnaA gi|50839099|gb|AAT81766.1| chromosomal replication initiator protein DnaA [Propionibacterium acnes KPA171202] gi|289155022|gb|EFD03704.1| chromosomal replication initiator protein DnaA [Propionibacterium acnes SK187] gi|289159291|gb|EFD07482.1| chromosomal replication initiator protein DnaA [Propionibacterium acnes J165] gi|291377061|gb|ADE00916.1| chromosomal replication initiator protein DnaA [Propionibacterium acnes SK137] gi|313771066|gb|EFS37032.1| replication initiator protein DnaA [Propionibacterium acnes HL074PA1] gi|313792568|gb|EFS40654.1| replication initiator protein DnaA [Propionibacterium acnes HL110PA1] gi|313803569|gb|EFS44751.1| replication initiator protein DnaA [Propionibacterium acnes HL110PA2] gi|313814221|gb|EFS51935.1| replication initiator protein DnaA [Propionibacterium acnes HL025PA1] gi|313821532|gb|EFS59246.1| replication initiator protein DnaA [Propionibacterium acnes HL036PA1] gi|314963873|gb|EFT07973.1| replication initiator protein DnaA [Propionibacterium acnes HL082PA1] gi|314969083|gb|EFT13181.1| replication initiator protein DnaA [Propionibacterium acnes HL037PA1] gi|314985203|gb|EFT29295.1| replication initiator protein DnaA [Propionibacterium acnes HL005PA1] gi|314987112|gb|EFT31204.1| replication initiator protein DnaA [Propionibacterium acnes HL005PA2] gi|315097162|gb|EFT69138.1| replication initiator protein DnaA [Propionibacterium acnes HL038PA1] gi|315107498|gb|EFT79474.1| replication initiator protein DnaA [Propionibacterium acnes HL030PA1] gi|315109866|gb|EFT81842.1| replication initiator protein DnaA [Propionibacterium acnes HL030PA2] gi|327444469|gb|EGE91123.1| replication initiator protein DnaA [Propionibacterium acnes HL013PA2] gi|327446723|gb|EGE93377.1| replication initiator protein DnaA [Propionibacterium acnes HL043PA2] gi|328757976|gb|EGF71592.1| replication initiator protein DnaA [Propionibacterium acnes HL020PA1] gi|332674399|gb|AEE71215.1| chromosomal replication initiator protein DnaA [Propionibacterium acnes 266] Length = 500 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 11/157 (7%) Query: 88 SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTA 144 +R+T F + +D +L+D DI L + FH N++H ++MT+ Sbjct: 248 NRTTEFRRSYRDVDVLLVD--------DIQFLQSKIQTQEEFFHTFNTLHNAQKQIVMTS 299 Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 P P L SR + + I PD + ++ + A +I ++ + +I R Sbjct: 300 DRPPKLLEALEPRLRSRFEWGLLTDIQPPDLETRIAILRRKVAAEKITVEPDVLEFIASR 359 Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++ ++ E + ++ A + SLA VLK+ Sbjct: 360 IQTNIRELEGALIRVTAFASLNQQPVDISLAEVVLKD 396 >gi|314980257|gb|EFT24351.1| replication initiator protein DnaA [Propionibacterium acnes HL072PA2] Length = 500 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 11/157 (7%) Query: 88 SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTA 144 +R+T F + +D +L+D DI L + FH N++H ++MT+ Sbjct: 248 NRTTEFRRSYRDVDVLLVD--------DIQFLQSKIQTQEEFFHTFNTLHNAQKQIVMTS 299 Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 P P L SR + + I PD + ++ + A +I ++ + +I R Sbjct: 300 DRPPKLLEALEPRLRSRFEWGLLTDIQPPDLETRIAILRRKVAAEKITVEPDVLEFIASR 359 Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++ ++ E + ++ A + SLA VLK+ Sbjct: 360 IQTNIRELEGALIRVTAFASLNQQPVDISLAEVVLKD 396 >gi|313765026|gb|EFS36390.1| replication initiator protein DnaA [Propionibacterium acnes HL013PA1] gi|314930919|gb|EFS94750.1| replication initiator protein DnaA [Propionibacterium acnes HL067PA1] gi|315099342|gb|EFT71318.1| replication initiator protein DnaA [Propionibacterium acnes HL059PA2] Length = 500 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 11/157 (7%) Query: 88 SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTA 144 +R+T F + +D +L+D DI L + FH N++H ++MT+ Sbjct: 248 NRTTEFRRSYRDVDVLLVD--------DIQFLQSKIQTQEEFFHTFNTLHNAQKQIVMTS 299 Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 P P L SR + + I PD + ++ + A +I ++ + +I R Sbjct: 300 DRPPKLLEALEPRLRSRFEWGLLTDIQPPDLETRIAILRRKVAAEKITVEPDVLEFIASR 359 Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++ ++ E + ++ A + SLA VLK+ Sbjct: 360 IQTNIRELEGALIRVTAFASLNQQPVDISLAEVVLKD 396 >gi|94309702|ref|YP_582912.1| Lipid A export ATP-binding/permease protein MsbA [Cupriavidus metallidurans CH34] gi|122064517|sp|Q1LQD3|MSBA_RALME RecName: Full=Lipid A export ATP-binding/permease protein MsbA gi|93353554|gb|ABF07643.1| fused lipid transporter subunits of ABC superfamily: membrane component ; ATP-binding component [Cupriavidus metallidurans CH34] Length = 594 Score = 39.3 bits (90), Expect = 0.47, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 21/89 (23%) Query: 58 SWPSWPSRVVILVGPSGSGKSCLAN------------IWSDKSRSTRFSNIAKSLDSILI 105 S + P VV LVGPSGSGK+ L N I D RF+ L Sbjct: 371 SLRAAPGEVVALVGPSGSGKTTLVNLVPRFFDPTEGHILLDGQPIDRFA---------LA 421 Query: 106 DTRKPVLLEDIDLLDFNDTQLFHIINSIH 134 D R+ + D++ FNDT ++ +H Sbjct: 422 DLRRQIAFVSQDVVLFNDTVAANVAYGVH 450 >gi|314917480|gb|EFS81311.1| replication initiator protein DnaA [Propionibacterium acnes HL050PA1] Length = 474 Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust. Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 11/157 (7%) Query: 88 SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTA 144 +R+T F + +D +L+D DI L + FH N++H ++MT+ Sbjct: 222 NRTTEFRRSYRDVDVLLVD--------DIQFLQSKIQTQEEFFHTFNTLHNAQKQIVMTS 273 Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 P P L SR + + I PD + ++ + A +I ++ + +I R Sbjct: 274 DRPPKLLEALEPRLRSRFEWGLLTDIQPPDLETRIAILRRKVAAEKITVEPDVLEFIASR 333 Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++ ++ E + ++ A + SLA VLK+ Sbjct: 334 IQTNIRELEGALIRVTAFASLNQQPVDISLAEVVLKD 370 >gi|86137113|ref|ZP_01055691.1| ABC transporter, ATP-binding protein [Roseobacter sp. MED193] gi|85826437|gb|EAQ46634.1| ABC transporter, ATP-binding protein [Roseobacter sp. MED193] Length = 239 Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust. Identities = 30/82 (36%), Positives = 39/82 (47%), Gaps = 20/82 (24%) Query: 46 HSAIEQAVRLID-SWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL 104 HSA+ A+R +D P+ +V+L+GPSGSGKS L NI R Sbjct: 23 HSAV-HALRGVDLEIPA--GDIVVLLGPSGSGKSTLLNIIGGLDRG-------------- 65 Query: 105 IDTRKPVLLEDIDLLDFNDTQL 126 TR V D+ L D +D QL Sbjct: 66 --TRGDVFFHDLCLSDMSDAQL 85 >gi|53728974|ref|ZP_00134440.2| COG0593: ATPase involved in DNA replication initiation [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208837|ref|YP_001054062.1| DNA replication initiation factor [Actinobacillus pleuropneumoniae L20] gi|165976798|ref|YP_001652391.1| DNA replication initiation factor [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|303250541|ref|ZP_07336738.1| DNA replication initiation factor [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303253536|ref|ZP_07339675.1| DNA replication initiation factor [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307246294|ref|ZP_07528375.1| hypothetical protein appser1_14980 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307248407|ref|ZP_07530430.1| hypothetical protein appser2_13830 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307250635|ref|ZP_07532575.1| hypothetical protein appser4_14110 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307253015|ref|ZP_07534902.1| hypothetical protein appser6_15250 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307255278|ref|ZP_07537093.1| hypothetical protein appser9_15130 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307257441|ref|ZP_07539210.1| hypothetical protein appser10_14380 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307259713|ref|ZP_07541436.1| hypothetical protein appser11_15100 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307261861|ref|ZP_07543525.1| hypothetical protein appser12_14200 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307264043|ref|ZP_07545643.1| hypothetical protein appser13_14480 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|126097629|gb|ABN74457.1| hypothetical protein APL_1373 [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165876899|gb|ABY69947.1| ATPase involved in DNA replication initiation [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|302647646|gb|EFL77863.1| DNA replication initiation factor [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302650529|gb|EFL80688.1| DNA replication initiation factor [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306852903|gb|EFM85127.1| hypothetical protein appser1_14980 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306855145|gb|EFM87325.1| hypothetical protein appser2_13830 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306857338|gb|EFM89454.1| hypothetical protein appser4_14110 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306859544|gb|EFM91570.1| hypothetical protein appser6_15250 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306861827|gb|EFM93806.1| hypothetical protein appser9_15130 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306864093|gb|EFM96007.1| hypothetical protein appser10_14380 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306866253|gb|EFM98118.1| hypothetical protein appser11_15100 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306868478|gb|EFN00291.1| hypothetical protein appser12_14200 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306870654|gb|EFN02398.1| hypothetical protein appser13_14480 [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 236 Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust. Identities = 41/189 (21%), Positives = 89/189 (47%), Gaps = 20/189 (10%) Query: 71 GPSGSGKSCL----ANIWSDKSRSTRFSNIAKS--LDSILIDTRKP---VLLEDIDLLDF 121 G SGKS L +N + +++ + + KS +++D + + L+DI ++ Sbjct: 46 GGKSSGKSHLLKAVSNHYLLNQQTSSYIPLEKSQYFSPMVLDNAEQLDVICLDDIQIVAG 105 Query: 122 NDT---QLFHIINSIHQ--------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 N+ +F++ N I + + + LL++A P + LPDL SRL V ++ Sbjct: 106 NEEWELAIFNLFNLIREQQSLFGNGHKTLLLISADCPPHQLQINLPDLRSRLTWGEVYQL 165 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 + DD ++ + + + + ++A ++++R++R L +D++D +L + Sbjct: 166 NDLSDDQKRIILQRNAYQKGMELSDEVANFLLKRLDRDLQTLSTELDRLDRASLQAQRKL 225 Query: 231 TRSLAAEVL 239 T E+L Sbjct: 226 TVPFVKEIL 234 >gi|314965762|gb|EFT09861.1| replication initiator protein DnaA [Propionibacterium acnes HL082PA2] Length = 474 Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust. Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 11/157 (7%) Query: 88 SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTA 144 +R+T F + +D +L+D DI L + FH N++H ++MT+ Sbjct: 222 NRTTEFRRSYRDVDVLLVD--------DIQFLQSKIQTQEEFFHTFNTLHNAQKQIVMTS 273 Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 P P L SR + + I PD + ++ + A +I ++ + +I R Sbjct: 274 DRPPKLLEALEPRLRSRFEWGLLTDIQPPDLETRIAILRRKVAAEKITVEPDVLEFIASR 333 Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++ ++ E + ++ A + SLA VLK+ Sbjct: 334 IQTNIRELEGALIRVTAFASLNQQPVDISLAEVVLKD 370 >gi|327334557|gb|EGE76268.1| DNA-directed DNA replication initiator protein [Propionibacterium acnes HL097PA1] Length = 474 Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust. Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 11/157 (7%) Query: 88 SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTA 144 +R+T F + +D +L+D DI L + FH N++H ++MT+ Sbjct: 222 NRTTEFRRSYRDVDVLLVD--------DIQFLQSKIQTQEEFFHTFNTLHNAQKQIVMTS 273 Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 P P L SR + + I PD + ++ + A +I ++ + +I R Sbjct: 274 DRPPKLLEALEPRLRSRFEWGLLTDIQPPDLETRIAILRRKVAAEKITVEPDVLEFIASR 333 Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++ ++ E + ++ A + SLA VLK+ Sbjct: 334 IQTNIRELEGALIRVTAFASLNQQPVDISLAEVVLKD 370 >gi|322378946|ref|ZP_08053360.1| chromosomal replication initiation protein [Helicobacter suis HS1] gi|322379800|ref|ZP_08054097.1| chromosomal replication initiation protein [Helicobacter suis HS5] gi|321147768|gb|EFX42371.1| chromosomal replication initiation protein [Helicobacter suis HS5] gi|321148622|gb|EFX43108.1| chromosomal replication initiation protein [Helicobacter suis HS1] Length = 433 Score = 39.3 bits (90), Expect = 0.56, Method: Compositional matrix adjust. Identities = 49/220 (22%), Positives = 89/220 (40%), Gaps = 27/220 (12%) Query: 46 HSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS----------RSTRFSN 95 H AI+ A ++ + S+ V+ G G GK+ + N +K+ + +F N Sbjct: 114 HLAIKVASQVAQNSGSYNP--VLFFGGVGLGKTHILNAIGNKACDRLQDVLYVTAEQFLN 171 Query: 96 ------IAKSLDSIL--IDTRKPVLLEDIDLLDFNDTQL-----FHIINSIHQYDSSLLM 142 S+D TR +L++D+ F Q+ FH N++H S ++M Sbjct: 172 DYVFRLGNHSMDKFQDKYRTRDYLLIDDVQF--FGGKQMVQEEFFHTFNALHSQGSQIVM 229 Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 T+ P L SR + + I P + +I + I +D + Y+ Sbjct: 230 TSDKPPRDIKGLADRLLSRFEMGMIASIQPPKLETKIAIINQKCQFNHIRMDAPVVEYLA 289 Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ E + +++ A+ G+ I SL VLK+T Sbjct: 290 SHTNENIRQIEGALLRLNATAMLTGVSIDLSLVEAVLKDT 329 >gi|313806856|gb|EFS45354.1| replication initiator protein DnaA [Propionibacterium acnes HL087PA2] gi|313811769|gb|EFS49483.1| replication initiator protein DnaA [Propionibacterium acnes HL083PA1] gi|313824524|gb|EFS62238.1| replication initiator protein DnaA [Propionibacterium acnes HL036PA2] gi|313826193|gb|EFS63907.1| replication initiator protein DnaA [Propionibacterium acnes HL063PA1] gi|313829189|gb|EFS66903.1| replication initiator protein DnaA [Propionibacterium acnes HL063PA2] gi|313832303|gb|EFS70017.1| replication initiator protein DnaA [Propionibacterium acnes HL007PA1] gi|313832763|gb|EFS70477.1| replication initiator protein DnaA [Propionibacterium acnes HL056PA1] gi|313839622|gb|EFS77336.1| replication initiator protein DnaA [Propionibacterium acnes HL086PA1] gi|314975198|gb|EFT19293.1| replication initiator protein DnaA [Propionibacterium acnes HL053PA1] gi|314977611|gb|EFT21706.1| replication initiator protein DnaA [Propionibacterium acnes HL045PA1] gi|314990686|gb|EFT34777.1| replication initiator protein DnaA [Propionibacterium acnes HL005PA3] gi|315078993|gb|EFT51005.1| replication initiator protein DnaA [Propionibacterium acnes HL053PA2] gi|315088015|gb|EFT59991.1| replication initiator protein DnaA [Propionibacterium acnes HL072PA1] gi|327332500|gb|EGE74235.1| DNA-directed DNA replication initiator protein [Propionibacterium acnes HL096PA2] gi|327333673|gb|EGE75390.1| DNA-directed DNA replication initiator protein [Propionibacterium acnes HL096PA3] gi|327448835|gb|EGE95489.1| replication initiator protein DnaA [Propionibacterium acnes HL043PA1] gi|328759811|gb|EGF73402.1| DNA-directed DNA replication initiator protein [Propionibacterium acnes HL099PA1] Length = 474 Score = 39.3 bits (90), Expect = 0.56, Method: Compositional matrix adjust. Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 11/157 (7%) Query: 88 SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTA 144 +R+T F + +D +L+D DI L + FH N++H ++MT+ Sbjct: 222 NRTTEFRRSYRDVDVLLVD--------DIQFLQSKIQTQEEFFHTFNTLHNAQKQIVMTS 273 Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 P P L SR + + I PD + ++ + A +I ++ + +I R Sbjct: 274 DRPPKLLEALEPRLRSRFEWGLLTDIQPPDLETRIAILRRKVAAEKITVEPDVLEFIASR 333 Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++ ++ E + ++ A + SLA VLK+ Sbjct: 334 IQTNIRELEGALIRVTAFASLNQQPVDISLAEVVLKD 370 >gi|311741699|ref|ZP_07715521.1| exopolyphosphatase [Corynebacterium pseudogenitalium ATCC 33035] gi|311303220|gb|EFQ79301.1| exopolyphosphatase [Corynebacterium pseudogenitalium ATCC 33035] Length = 545 Score = 38.9 bits (89), Expect = 0.57, Method: Compositional matrix adjust. Identities = 26/124 (20%), Positives = 55/124 (44%), Gaps = 11/124 (8%) Query: 89 RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTAR 145 R F ++LD +++D DI L+ ++ + FH N++HQ + +++++ Sbjct: 291 RQESFKRRYRNLDILMVD--------DIQFLEGKESTQEEFFHTFNALHQANKQIILSSD 342 Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 P L +R + + I PD + +++K A+ +D+ + I R Sbjct: 343 RPPKQLTTLEDRLRTRFEGGLITDIQPPDLETRIAILMKKAANDGTEVDRSVLELIASRF 402 Query: 206 ERSL 209 E S+ Sbjct: 403 ESSI 406 >gi|150016036|ref|YP_001308290.1| ribosome-associated GTPase [Clostridium beijerinckii NCIMB 8052] gi|254766358|sp|A6LSK4|RSGA_CLOB8 RecName: Full=Putative ribosome biogenesis GTPase RsgA gi|149902501|gb|ABR33334.1| ribosome small subunit-dependent GTPase A [Clostridium beijerinckii NCIMB 8052] Length = 290 Score = 38.9 bits (89), Expect = 0.57, Method: Compositional matrix adjust. Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 32/112 (28%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 E LF + + +GI R +E+ +R + + GPSG+GKS L N S Sbjct: 133 EVLFINAKKGIGIER--------LEEKIR---------GNITVFCGPSGAGKSTLINKLS 175 Query: 86 DKS---------------RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 +K +TR S + + D ++DT LE DL+D N Sbjct: 176 NKEHMETGNVSVKLGRGKHTTRHSELIEVADGYIVDTPGFSTLEIKDLMDKN 227 >gi|313815417|gb|EFS53131.1| replication initiator protein DnaA [Propionibacterium acnes HL059PA1] gi|314916213|gb|EFS80044.1| replication initiator protein DnaA [Propionibacterium acnes HL005PA4] gi|314921816|gb|EFS85647.1| replication initiator protein DnaA [Propionibacterium acnes HL050PA3] gi|314955285|gb|EFS99690.1| replication initiator protein DnaA [Propionibacterium acnes HL027PA1] gi|314959158|gb|EFT03260.1| replication initiator protein DnaA [Propionibacterium acnes HL002PA1] gi|315102317|gb|EFT74293.1| replication initiator protein DnaA [Propionibacterium acnes HL046PA1] gi|327454252|gb|EGF00907.1| replication initiator protein DnaA [Propionibacterium acnes HL087PA3] gi|327456312|gb|EGF02967.1| replication initiator protein DnaA [Propionibacterium acnes HL083PA2] gi|328756010|gb|EGF69626.1| replication initiator protein DnaA [Propionibacterium acnes HL087PA1] gi|328758853|gb|EGF72469.1| replication initiator protein DnaA [Propionibacterium acnes HL025PA2] Length = 474 Score = 38.9 bits (89), Expect = 0.58, Method: Compositional matrix adjust. Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 11/157 (7%) Query: 88 SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTA 144 +R+T F + +D +L+D DI L + FH N++H ++MT+ Sbjct: 222 NRTTEFRRSYRDVDVLLVD--------DIQFLQSKIQTQEEFFHTFNTLHNAQKQIVMTS 273 Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 P P L SR + + I PD + ++ + A +I ++ + +I R Sbjct: 274 DRPPKLLEALEPRLRSRFEWGLLTDIQPPDLETRIAILRRKVAAEKITVEPDVLEFIASR 333 Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++ ++ E + ++ A + SLA VLK+ Sbjct: 334 IQTNIRELEGALIRVTAFASLNQQPVDISLAEVVLKD 370 >gi|118580735|ref|YP_901985.1| chromosomal replication initiator, DnaA [Pelobacter propionicus DSM 2379] gi|118503445|gb|ABK99927.1| Chromosomal replication initiator, DnaA [Pelobacter propionicus DSM 2379] Length = 236 Score = 38.9 bits (89), Expect = 0.58, Method: Compositional matrix adjust. Identities = 51/212 (24%), Positives = 90/212 (42%), Gaps = 20/212 (9%) Query: 47 SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL----------ANIWSDKSRSTRFSNI 96 +A+ A R+ D S P R++ L GP GSGK+ L N S R Sbjct: 26 AAVRFARRITDE--SEPERLLYLHGPPGSGKTHLLRAIALELAGGNPDQAPYLSCRDVRS 83 Query: 97 AKSLDSILIDTRKPVLLEDIDLL-DFNDTQ--LFHIINSIHQYDSSLLMTARTFPVSWGV 153 A+SL + ++++D+ LL D D + L+ + N H+ ++++ P Sbjct: 84 ARSLVDRFHGAQG-LVVDDLQLLPDSQDLRAALWQLFNDFHEAGRAVVLAGLHPPRMLPH 142 Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213 L SRL V ++ DD ++ K+ DRQ+ + + YI+ R + Sbjct: 143 LDDHLVSRLLWGLVARVDASDDLSRRMILKKIADDRQVRVPDDVVEYIMVTTSREVGELI 202 Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 + + +L+ IT +LA +E ++C Sbjct: 203 GFFETIYRFSLAHKRRITLALA----REAREC 230 >gi|296328222|ref|ZP_06870753.1| ATP-binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154734|gb|EFG95520.1| ATP-binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 290 Score = 38.9 bits (89), Expect = 0.59, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 2/72 (2%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 V+I+ G SG+GK+ NI D S T N+ L+ L+DT L ID+ F +T Sbjct: 5 HVIIVTGLSGAGKTTALNILEDMSYYT-IDNLPLGLEKSLLDTEIEKLAVGIDIRTFKNT 63 Query: 125 Q-LFHIINSIHQ 135 + F IN I + Sbjct: 64 KDFFTFINYIKE 75 >gi|326563702|gb|EGE13953.1| DnaA family protein [Moraxella catarrhalis 46P47B1] gi|326564422|gb|EGE14650.1| DnaA family protein [Moraxella catarrhalis 12P80B1] gi|326577487|gb|EGE27367.1| DnaA family protein [Moraxella catarrhalis O35E] Length = 254 Score = 38.9 bits (89), Expect = 0.60, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 21/138 (15%) Query: 56 IDSWPSWPSRVVILVGPSGSGKSCLAN-IWSDKSRSTRFSNIAKSLDSILIDTRKP---- 110 ID R + +VG SG GK+ LA+ I+ + T S + SL+ + + P Sbjct: 34 IDKLVQGSLRELFIVGDSGFGKTHLASAIYEHYTSMT--SKMVISLNLTELIEQDPHATA 91 Query: 111 -VLLEDIDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158 V LE DL+ +D Q LFH+IN + ++ +L A + L DL Sbjct: 92 LVGLEMFDLIIVDDLQMVRHSYEWQEGLFHLINRLREHQKQILYLADDPARELQIGLLDL 151 Query: 159 CSRLKAATVVKISLPDDD 176 +RL A + ++LPD+D Sbjct: 152 HTRLSLAPM--LTLPDND 167 >gi|326561047|gb|EGE11412.1| DnaA family protein [Moraxella catarrhalis 7169] gi|326566731|gb|EGE16870.1| DnaA family protein [Moraxella catarrhalis 103P14B1] gi|326569353|gb|EGE19413.1| DnaA family protein [Moraxella catarrhalis BC8] gi|326571448|gb|EGE21463.1| DnaA family protein [Moraxella catarrhalis BC7] gi|326575269|gb|EGE25197.1| DnaA family protein [Moraxella catarrhalis CO72] gi|326576644|gb|EGE26551.1| DnaA family protein [Moraxella catarrhalis 101P30B1] Length = 254 Score = 38.9 bits (89), Expect = 0.61, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 21/138 (15%) Query: 56 IDSWPSWPSRVVILVGPSGSGKSCLAN-IWSDKSRSTRFSNIAKSLDSILIDTRKP---- 110 ID R + +VG SG GK+ LA+ I+ + T S + SL+ + + P Sbjct: 34 IDKLVQGSLRELFIVGDSGFGKTHLASAIYEHYTSMT--SKMVISLNLTELIEQDPHATA 91 Query: 111 -VLLEDIDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158 V LE DL+ +D Q LFH+IN + ++ +L A + L DL Sbjct: 92 LVGLEMFDLIIVDDLQMVRHSYEWQEGLFHLINRLREHQKQILYLADDPARELQIGLLDL 151 Query: 159 CSRLKAATVVKISLPDDD 176 +RL A + ++LPD+D Sbjct: 152 HTRLSLAPM--LTLPDND 167 >gi|309781749|ref|ZP_07676482.1| lipid A export permease/ATP-binding protein MsbA [Ralstonia sp. 5_7_47FAA] gi|308919390|gb|EFP65054.1| lipid A export permease/ATP-binding protein MsbA [Ralstonia sp. 5_7_47FAA] Length = 589 Score = 38.9 bits (89), Expect = 0.61, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 3/65 (4%) Query: 63 PSRVVILVGPSGSGKSCLANI---WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P VV LVGPSGSGK+ L N+ + D + T + D L D R+ + D++ Sbjct: 372 PGEVVALVGPSGSGKTTLVNLLPRFFDPTSGTISLDGDALADLALHDLRRQIAFVSQDVV 431 Query: 120 DFNDT 124 FNDT Sbjct: 432 LFNDT 436 >gi|268678645|ref|YP_003303076.1| chromosomal replication initiator protein DnaA [Sulfurospirillum deleyianum DSM 6946] gi|268616676|gb|ACZ11041.1| chromosomal replication initiator protein DnaA [Sulfurospirillum deleyianum DSM 6946] Length = 441 Score = 38.9 bits (89), Expect = 0.61, Method: Compositional matrix adjust. Identities = 43/211 (20%), Positives = 79/211 (37%), Gaps = 21/211 (9%) Query: 52 AVRLIDSWPSWPSRVVILVGPSGSGKSCL----ANIWSDKSRSTRFSNIAKSLDSILIDT 107 A + + P V + GP+G GK+ L N K + ++ I + ++ + Sbjct: 126 AAKSVAEKPGVMYNPVFIYGPTGLGKTHLIHAIGNYAQSKGKIVIYATIEQFMNDFTYNL 185 Query: 108 RKPVL------LEDIDLLDFNDTQL-----------FHIINSIHQYDSSLLMTARTFPVS 150 R + D+L +DTQ FH N +H +++T+ P Sbjct: 186 RNQSMERFREKYRSCDVLLIDDTQFLSNKIQTQEEFFHTFNELHSAGKQIVLTSDKPPKM 245 Query: 151 WGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L SR + + + LP+ + +I K I ++ + YI M ++ Sbjct: 246 INGLEDRLKSRFEWGLIADVGLPELETKIAIIKKKCELDGINLNSDIVNYIASNMGDNIR 305 Query: 211 FAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 E + ++ AL IT A V++E Sbjct: 306 EIESAIINLNAYALLMRQDITLEFAKNVMRE 336 >gi|187929476|ref|YP_001899963.1| lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA [Ralstonia pickettii 12J] gi|187726366|gb|ACD27531.1| lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA [Ralstonia pickettii 12J] Length = 574 Score = 38.9 bits (89), Expect = 0.61, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 3/65 (4%) Query: 63 PSRVVILVGPSGSGKSCLANI---WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P VV LVGPSGSGK+ L N+ + D + T + D L D R+ + D++ Sbjct: 357 PGEVVALVGPSGSGKTTLVNLLPRFFDPTSGTISLDGDALADLALHDLRRQIAFVSQDVV 416 Query: 120 DFNDT 124 FNDT Sbjct: 417 LFNDT 421 >gi|241663594|ref|YP_002981954.1| lipid ABC transporter ATPase/inner membrane protein [Ralstonia pickettii 12D] gi|240865621|gb|ACS63282.1| lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA [Ralstonia pickettii 12D] Length = 574 Score = 38.9 bits (89), Expect = 0.61, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 3/65 (4%) Query: 63 PSRVVILVGPSGSGKSCLANI---WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P VV LVGPSGSGK+ L N+ + D + T + D L D R+ + D++ Sbjct: 357 PGEVVALVGPSGSGKTTLVNLLPRFFDPTSGTISLDGDALADLALHDLRRQIAFVSQDVV 416 Query: 120 DFNDT 124 FNDT Sbjct: 417 LFNDT 421 >gi|84497497|ref|ZP_00996319.1| ABC transporter ATP-binding protein [Janibacter sp. HTCC2649] gi|84382385|gb|EAP98267.1| ABC transporter ATP-binding protein [Janibacter sp. HTCC2649] Length = 243 Score = 38.9 bits (89), Expect = 0.61, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 4/53 (7%) Query: 45 VHSAIEQAVRLID--SWPSWPSRVVILVGPSGSGKSCLANIWS--DKSRSTRF 93 +H + AVR +D S P +V ++GPSGSGKS L N+ DK+ S R Sbjct: 14 IHGTGDTAVRALDGVSLEVMPGELVAVMGPSGSGKSTLLNLAGGLDKATSGRV 66 >gi|255324008|ref|ZP_05365133.1| chromosomal replication initiator protein DnaA [Corynebacterium tuberculostearicum SK141] gi|255298865|gb|EET78157.1| chromosomal replication initiator protein DnaA [Corynebacterium tuberculostearicum SK141] Length = 545 Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust. Identities = 26/124 (20%), Positives = 55/124 (44%), Gaps = 11/124 (8%) Query: 89 RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTAR 145 R F ++LD +++D DI L+ ++ + FH N++HQ + +++++ Sbjct: 291 RQESFKRRYRNLDILMVD--------DIQFLEGKESTQEEFFHTFNALHQANKQIILSSD 342 Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 P L +R + + I PD + +++K A+ +D+ + I R Sbjct: 343 RPPKQLTTLEDRLRTRFEGGLITDIQPPDLETRIAILMKKAANDGTEVDRSVLELIASRF 402 Query: 206 ERSL 209 E S+ Sbjct: 403 ESSI 406 >gi|296112801|ref|YP_003626739.1| DnaA family protein [Moraxella catarrhalis RH4] gi|295920495|gb|ADG60846.1| DnaA family protein [Moraxella catarrhalis RH4] Length = 254 Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 21/138 (15%) Query: 56 IDSWPSWPSRVVILVGPSGSGKSCLAN-IWSDKSRSTRFSNIAKSLDSILIDTRKP---- 110 ID R + +VG SG GK+ LA+ I+ + T S + SL+ + + P Sbjct: 34 IDKLVQGSLRELFIVGDSGFGKTHLASAIYEHYTSMT--SKMVISLNLTELIEQDPHATA 91 Query: 111 -VLLEDIDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158 V LE DL+ +D Q LFH+IN + ++ +L A + L DL Sbjct: 92 LVGLEMFDLIIVDDLQMVRHSYEWQEGLFHLINRLREHQKQILYLADDPARELQIGLLDL 151 Query: 159 CSRLKAATVVKISLPDDD 176 +RL A + ++LPD+D Sbjct: 152 HTRLSLAPM--LTLPDND 167 >gi|190150693|ref|YP_001969218.1| hypothetical protein APP7_1424 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|189915824|gb|ACE62076.1| hypothetical protein APP7_1424 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] Length = 246 Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust. Identities = 41/189 (21%), Positives = 89/189 (47%), Gaps = 20/189 (10%) Query: 71 GPSGSGKSCL----ANIWSDKSRSTRFSNIAKS--LDSILIDTRKP---VLLEDIDLLDF 121 G SGKS L +N + +++ + + KS +++D + + L+DI ++ Sbjct: 56 GGKSSGKSHLLKAVSNHYLLNQQTSSYIPLEKSQYFSPMVLDNAEQLDVICLDDIQIVAG 115 Query: 122 NDT---QLFHIINSIHQ--------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 N+ +F++ N I + + + LL++A P + LPDL SRL V ++ Sbjct: 116 NEEWELAIFNLFNLIREQQSLFGNGHKTLLLISADCPPHQLQINLPDLRSRLTWGEVYQL 175 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 + DD ++ + + + + ++A ++++R++R L +D++D +L + Sbjct: 176 NDLSDDQKRIILQRNAYQKGMELSDEVANFLLKRLDRDLQTLSTELDRLDRASLQAQRKL 235 Query: 231 TRSLAAEVL 239 T E+L Sbjct: 236 TVPFVKEIL 244 >gi|255534685|ref|YP_003095056.1| Chromosomal replication initiator protein dnaA [Flavobacteriaceae bacterium 3519-10] gi|255340881|gb|ACU06994.1| Chromosomal replication initiator protein dnaA [Flavobacteriaceae bacterium 3519-10] Length = 488 Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust. Identities = 43/186 (23%), Positives = 83/186 (44%), Gaps = 19/186 (10%) Query: 61 SWPSRVVILVGPSGSGKSCLANIWSDKS-RSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 S+P +VV+ + S K + + K+ + T F+N + +D ++ID DI L Sbjct: 213 SYPDKVVLYLS---SEKFIQQFVSAAKAHKQTEFANFYQMVDVLIID--------DIQFL 261 Query: 120 DFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 + FHI + +HQ +++T+ PV + SR K +I PD D Sbjct: 262 SGKKSTQDSFFHIFDYLHQNGKQIILTSDKAPVDILDIQDRIVSRFKWGLSAEIKSPDFD 321 Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236 K+IV + I + + + ++ ++ ++ +L+ + N ++ L+ Sbjct: 322 TRRKIIVDKLSRDGIVLTEDMLDFLASEVKTNV---RELIGVI-NSVIAYSTVYKSELSL 377 Query: 237 EVLKET 242 E+LKET Sbjct: 378 ELLKET 383 >gi|145640667|ref|ZP_01796250.1| chromosomal replication initiation protein [Haemophilus influenzae R3021] gi|145274593|gb|EDK14456.1| chromosomal replication initiation protein [Haemophilus influenzae 22.4-21] Length = 454 Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust. Identities = 31/153 (20%), Positives = 67/153 (43%), Gaps = 11/153 (7%) Query: 92 RFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFP 148 +F +SLD++L+D DI + + FHI NS+ + +++T+ +P Sbjct: 209 QFKKFYRSLDALLVD--------DIQFFAEKEKTQEEFFHIFNSLFETGRQIILTSDRYP 260 Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 L SR I PD + +++K + + + +++A +I QR+ + Sbjct: 261 KEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNLNLPEEVAFFIAQRLRTN 320 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + E ++++ + +G I + LK+ Sbjct: 321 VRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353 >gi|150387854|ref|YP_001317903.1| chromosomal replication initiation protein [Alkaliphilus metalliredigens QYMF] gi|167016895|sp|A6TJ76|DNAA_ALKMQ RecName: Full=Chromosomal replication initiator protein DnaA gi|149947716|gb|ABR46244.1| chromosomal replication initiator protein DnaA [Alkaliphilus metalliredigens QYMF] Length = 448 Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust. Identities = 31/156 (19%), Positives = 71/156 (45%), Gaps = 11/156 (7%) Query: 89 RSTRFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTAR 145 R+ F N +++D +L+D DI + + + FH N++H+ + +++++ Sbjct: 198 RNVEFRNRYRNVDVLLVD--------DIQFIAGKERTQEEFFHTFNALHESNKQIIISSD 249 Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 P L SR + + I PD + ++ K I++ ++ A+I +++ Sbjct: 250 RPPKEIPTLEERLRSRFEWGLITDIQPPDLETRIAILRKKAQMENIYVPDEVTAHIAKKI 309 Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + ++ E + ++ + +T LA+E LKE Sbjct: 310 QSNIRELEGALIRIVAYSSLTNSEVTVELASEALKE 345 >gi|326567507|gb|EGE17622.1| DnaA family protein [Moraxella catarrhalis BC1] Length = 254 Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 21/138 (15%) Query: 56 IDSWPSWPSRVVILVGPSGSGKSCLAN-IWSDKSRSTRFSNIAKSLDSILIDTRKP---- 110 ID R + +VG SG GK+ LA+ I+ + T S + SL+ + + P Sbjct: 34 IDKLVQGSLRELFIVGDSGFGKTHLASAIYEHYTSMT--SKMVISLNLTELIEQDPHATA 91 Query: 111 -VLLEDIDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158 V LE DL+ +D Q LFH+IN + ++ +L A + L DL Sbjct: 92 LVGLEMFDLIIVDDLQMVRHSYEWQEGLFHLINRLREHQKQILYLADDPARELQIGLLDL 151 Query: 159 CSRLKAATVVKISLPDDD 176 +RL A + ++LPD+D Sbjct: 152 HTRLSLAPM--LTLPDND 167 >gi|148828164|ref|YP_001292917.1| chromosomal replication initiation protein [Haemophilus influenzae PittGG] gi|148719406|gb|ABR00534.1| chromosomal replication initiation protein [Haemophilus influenzae PittGG] Length = 454 Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust. Identities = 31/153 (20%), Positives = 67/153 (43%), Gaps = 11/153 (7%) Query: 92 RFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFP 148 +F +SLD++L+D DI + + FHI NS+ + +++T+ +P Sbjct: 209 QFKKFYRSLDALLVD--------DIQFFAEKEKTQEEFFHIFNSLFETGRQIILTSDRYP 260 Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 L SR I PD + +++K + + + +++A +I QR+ + Sbjct: 261 KEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNMNLPEEVAFFIAQRLRTN 320 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + E ++++ + +G I + LK+ Sbjct: 321 VRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353 >gi|145634169|ref|ZP_01789880.1| chromosomal replication initiation protein [Haemophilus influenzae PittAA] gi|148826359|ref|YP_001291112.1| chromosomal replication initiation protein [Haemophilus influenzae PittEE] gi|145268613|gb|EDK08606.1| chromosomal replication initiation protein [Haemophilus influenzae PittAA] gi|148716519|gb|ABQ98729.1| chromosomal replication initiation protein [Haemophilus influenzae PittEE] Length = 454 Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust. Identities = 31/153 (20%), Positives = 67/153 (43%), Gaps = 11/153 (7%) Query: 92 RFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFP 148 +F +SLD++L+D DI + + FHI NS+ + +++T+ +P Sbjct: 209 QFKKFYRSLDALLVD--------DIQFFAEKEKTQEEFFHIFNSLFETGRQIILTSDRYP 260 Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 L SR I PD + +++K + + + +++A +I QR+ + Sbjct: 261 KEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNMNLPEEVAFFIAQRLRTN 320 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + E ++++ + +G I + LK+ Sbjct: 321 VRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353 >gi|313817643|gb|EFS55357.1| replication initiator protein DnaA [Propionibacterium acnes HL046PA2] gi|314961663|gb|EFT05764.1| replication initiator protein DnaA [Propionibacterium acnes HL002PA2] gi|315081497|gb|EFT53473.1| replication initiator protein DnaA [Propionibacterium acnes HL078PA1] gi|315083080|gb|EFT55056.1| replication initiator protein DnaA [Propionibacterium acnes HL027PA2] gi|315086613|gb|EFT58589.1| replication initiator protein DnaA [Propionibacterium acnes HL002PA3] Length = 428 Score = 38.9 bits (89), Expect = 0.67, Method: Compositional matrix adjust. Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 11/157 (7%) Query: 88 SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTA 144 +R+T F + +D +L+D DI L + FH N++H ++MT+ Sbjct: 176 NRTTEFRRSYRDVDVLLVD--------DIQFLQSKIQTQEEFFHTFNTLHNAQKQIVMTS 227 Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 P P L SR + + I PD + ++ + A +I ++ + +I R Sbjct: 228 DRPPKLLEALEPRLRSRFEWGLLTDIQPPDLETRIAILRRKVAAEKITVEPDVLEFIASR 287 Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++ ++ E + ++ A + SLA VLK+ Sbjct: 288 IQTNIRELEGALIRVTAFASLNQQPVDISLAEVVLKD 324 >gi|297171395|gb|ADI22398.1| ATPase involved in DNA replication initiation [uncultured Planctomycetales bacterium HF0500_02G17] Length = 444 Score = 38.9 bits (89), Expect = 0.67, Method: Compositional matrix adjust. Identities = 42/190 (22%), Positives = 74/190 (38%), Gaps = 26/190 (13%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL----ANIWSDKSRSTRF 93 + + L H A + ID P + L GPSG GK+ L A +++ R Sbjct: 82 VGESNRLAHRAALRIAEGIDDAAFSP---LFLHGPSGVGKTHLLEGIARRTQERNPGARV 138 Query: 94 SNIA--------------KSLDSILIDTRKPVLL--EDIDLL---DFNDTQLFHIINSIH 134 + + +DS R LL +D+ L T+L H ++++ Sbjct: 139 RYVTAEAFTNEFINAIQNRGMDSFRKTWRGVTLLCIDDVHFLRGKQSTQTELLHTLDAVG 198 Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194 + +++ + P L SR VV+I PDD +++V + A R + Sbjct: 199 LRQARIVLASDEPPRKIAELSDQLVSRFMGGAVVRIDEPDDALCRQLLVALAARRGLVFT 258 Query: 195 KKLAAYIVQR 204 + + +VQR Sbjct: 259 EDGISMLVQR 268 >gi|152981564|ref|YP_001354562.1| hypothetical protein mma_2872 [Janthinobacterium sp. Marseille] gi|151281641|gb|ABR90051.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 223 Score = 38.9 bits (89), Expect = 0.68, Method: Compositional matrix adjust. Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 4/178 (2%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 R V L G +G+GK+ L ++ + R+ + D L D+ + L D D Sbjct: 45 RFVYLWGEAGAGKTHLLRAMAETPHA-RYLDSDAGTDDFLYDSATTLYLLDDSHKLTPDA 103 Query: 125 QL--FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 Q+ F + N + + LL P S V DL +R + ++ DD + Sbjct: 104 QIAAFALFNQVREQGGCLLAAGNAAPASLTVR-EDLRTRFGWGLIYQVHGLSDDEKIAAL 162 Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 R + + + Y++ R + ++D +D +L IT L E+L+ Sbjct: 163 THAAGARGLTLSPGVLPYLITHFARDMRSLSAMLDALDQYSLETKRPITLPLLRELLQ 220 >gi|260581928|ref|ZP_05849724.1| chromosomal replication initiator protein DnaA [Haemophilus influenzae NT127] gi|260095121|gb|EEW79013.1| chromosomal replication initiator protein DnaA [Haemophilus influenzae NT127] Length = 454 Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust. Identities = 31/153 (20%), Positives = 67/153 (43%), Gaps = 11/153 (7%) Query: 92 RFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFP 148 +F +SLD++L+D DI + + FHI NS+ + +++T+ +P Sbjct: 209 QFKKFYRSLDALLVD--------DIQFFAEKEKTQEEFFHIFNSLFETGRQIILTSDRYP 260 Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 L SR I PD + +++K + + + +++A +I QR+ + Sbjct: 261 KEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNLNLPEEVAFFIAQRLRTN 320 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + E ++++ + +G I + LK+ Sbjct: 321 VRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353 >gi|262373132|ref|ZP_06066411.1| DnaA regulatory inactivator Hda [Acinetobacter junii SH205] gi|262313157|gb|EEY94242.1| DnaA regulatory inactivator Hda [Acinetobacter junii SH205] Length = 232 Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust. Identities = 45/177 (25%), Positives = 78/177 (44%), Gaps = 32/177 (18%) Query: 71 GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL-LEDIDLLDFNDT----- 124 G +G+GKS L + D I SL +L + + LE DL+ +D Sbjct: 46 GGAGTGKSHLLSAICDSYLELNRPAIKVSLLELLDAPIEAITSLEFYDLVALDDVDAICG 105 Query: 125 ------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178 +FH++N+ ++ L+ ++R P+ + LPDL SRL A VK+ P+ Sbjct: 106 VPHWQKAVFHLMNN---HEGQLVFSSRVAPIELKLELPDLQSRLTQAVSVKV--PNG--- 157 Query: 179 EKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235 F DRQ + ++ R R + F +++VD + N + + ++LA Sbjct: 158 -----SSFIDRQALLQS-----VMNR--RGIHFDQQIVDYLLNNGPHQASVLLQTLA 202 >gi|145630089|ref|ZP_01785871.1| chromosomal replication initiation protein [Haemophilus influenzae R3021] gi|144984370|gb|EDJ91793.1| chromosomal replication initiation protein [Haemophilus influenzae R3021] Length = 439 Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust. Identities = 31/153 (20%), Positives = 67/153 (43%), Gaps = 11/153 (7%) Query: 92 RFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFP 148 +F +SLD++L+D DI + + FHI NS+ + +++T+ +P Sbjct: 209 QFKKFYRSLDALLVD--------DIQFFAEKEKTQEEFFHIFNSLFETGRQIILTSDRYP 260 Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 L SR I PD + +++K + + + +++A +I QR+ + Sbjct: 261 KEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNMNLPEEVAFFIAQRLRTN 320 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + E ++++ + +G I + LK+ Sbjct: 321 VRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353 >gi|291455692|ref|ZP_06595082.1| putative replication initiator protein [Bifidobacterium breve DSM 20213] gi|291382620|gb|EFE90138.1| putative replication initiator protein [Bifidobacterium breve DSM 20213] Length = 488 Score = 38.9 bits (89), Expect = 0.70, Method: Compositional matrix adjust. Identities = 35/166 (21%), Positives = 69/166 (41%), Gaps = 11/166 (6%) Query: 79 CLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQ 135 L N + + F+ + +D +LID DI L + Q FH NS+HQ Sbjct: 227 ALQNTNQSQGQIAEFNRRYRQVDVLLID--------DIQFLGGKEATLDQFFHTFNSLHQ 278 Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195 + +++ + P + L SR ++ V + PD + ++ + A I Sbjct: 279 ANKRIVIASDVAPKNLKGFEARLISRFESGLTVDVKPPDLETRIAILRMIAAMNGSKIPN 338 Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I +R ++ E + ++ +A +TR+LA + L++ Sbjct: 339 DVLDLIAERFTENIRELEGALTRVTAVASLSNQPVTRALAEQTLQD 384 >gi|291612473|ref|YP_003522630.1| chromosomal replication initiator protein DnaA [Sideroxydans lithotrophicus ES-1] gi|291582585|gb|ADE10243.1| chromosomal replication initiator protein DnaA [Sideroxydans lithotrophicus ES-1] Length = 447 Score = 38.9 bits (89), Expect = 0.71, Method: Compositional matrix adjust. Identities = 48/227 (21%), Positives = 89/227 (39%), Gaps = 29/227 (12%) Query: 39 SRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL----ANIWSDKSRSTRF- 93 + + L H+A Q + P + + G G GK+ L N+ S K+ R Sbjct: 124 GKANQLAHAAAIQ----VAETPGVAYNPLFIYGGVGLGKTHLLQAIGNLVSKKNPQARIC 179 Query: 94 --------SNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL-----------FHIINSIH 134 S + ++ + D K +DLL +D Q F+ +NS+ Sbjct: 180 YIHATNYISGVVRAFQTKNFDEFKQ-FYNSLDLLLIDDIQFIADKPGTQQEFFYTLNSLI 238 Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194 + +++T TFP P L SR V I P + ++++ A I Sbjct: 239 DTNKQVVITCDTFPKEITGIEPRLTSRFTCGLTVAIEPPGLEMRVAILLQKSATNGSPIS 298 Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + +A +I + + ++ E +++++ A I+ LA E LK+ Sbjct: 299 EDVAFFIAKHVRSNIRELEGALNRIEAYARFHKRIISIELAKEALKD 345 >gi|224372071|ref|YP_002606443.1| chromosomal replication initiator protein DnaA [Nautilia profundicola AmH] gi|254777909|sp|B9L735|DNAA_NAUPA RecName: Full=Chromosomal replication initiator protein DnaA gi|223588880|gb|ACM92616.1| chromosomal replication initiator protein DnaA [Nautilia profundicola AmH] Length = 436 Score = 38.9 bits (89), Expect = 0.71, Method: Compositional matrix adjust. Identities = 36/156 (23%), Positives = 71/156 (45%), Gaps = 16/156 (10%) Query: 92 RFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFP 148 RF ++ D +LID D+ + + FH N ++ + +TA P Sbjct: 185 RFHEKYRNCDVLLID--------DVQFFAGKERTQEEFFHTFNELYNQKKQICLTADRPP 236 Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 + L SR +A +V I P+ + ++I K I++ +++ YI +++ + Sbjct: 237 KKLYDLVDRLRSRFEAGLIVDIQPPELETKIEIIRKKCELNGIYLPEEIIEYIATKLDSN 296 Query: 209 LVFAEKLVDKMDNLALSRGMG---ITRSLAAEVLKE 241 + E ++ K++ A+S+ +G IT A + LKE Sbjct: 297 IREIEGMITKIN--AMSKILGISEITLDFAKQALKE 330 >gi|229846051|ref|ZP_04466163.1| chromosomal replication initiation protein [Haemophilus influenzae 7P49H1] gi|229811055|gb|EEP46772.1| chromosomal replication initiation protein [Haemophilus influenzae 7P49H1] Length = 454 Score = 38.9 bits (89), Expect = 0.71, Method: Compositional matrix adjust. Identities = 31/153 (20%), Positives = 67/153 (43%), Gaps = 11/153 (7%) Query: 92 RFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFP 148 +F +SLD++L+D DI + + FHI NS+ + +++T+ +P Sbjct: 209 QFKKFYRSLDALLVD--------DIQFFAEKEKTQEEFFHIFNSLFETGRQIILTSDRYP 260 Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 L SR I PD + +++K + + + +++A +I QR+ + Sbjct: 261 KEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNMNLPEEVAFFIAQRLRTN 320 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + E ++++ + +G I + LK+ Sbjct: 321 VRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353 >gi|171463880|ref|YP_001797993.1| lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193418|gb|ACB44379.1| lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 587 Score = 38.9 bits (89), Expect = 0.71, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 5/66 (7%) Query: 63 PSRVVILVGPSGSGKSCLANI----WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL 118 P VV VGPSG GKS L N+ + + NI + +L D R+ + D+ Sbjct: 370 PGEVVAFVGPSGGGKSTLVNLLPRFYKPSTGHIFLDNIPLE-EIVLADVRRQIAFVSQDV 428 Query: 119 LDFNDT 124 + FNDT Sbjct: 429 ILFNDT 434 >gi|145632379|ref|ZP_01788114.1| chromosomal replication initiation protein [Haemophilus influenzae 3655] gi|144987286|gb|EDJ93816.1| chromosomal replication initiation protein [Haemophilus influenzae 3655] Length = 454 Score = 38.9 bits (89), Expect = 0.71, Method: Compositional matrix adjust. Identities = 31/153 (20%), Positives = 67/153 (43%), Gaps = 11/153 (7%) Query: 92 RFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFP 148 +F +SLD++L+D DI + + FHI NS+ + +++T+ +P Sbjct: 209 QFKKFYRSLDALLVD--------DIQFFAEKEKTQEEFFHIFNSLFETGRQIILTSDRYP 260 Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 L SR I PD + +++K + + + +++A +I QR+ + Sbjct: 261 KEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNMNLPEEVAFFIAQRLRTN 320 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + E ++++ + +G I + LK+ Sbjct: 321 VRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353 >gi|16272931|ref|NP_439156.1| chromosomal replication initiation protein [Haemophilus influenzae Rd KW20] gi|260580084|ref|ZP_05847914.1| chromosomal replication initiator protein DnaA [Haemophilus influenzae RdAW] gi|319897495|ref|YP_004135692.1| chromosomal replication initiator protein dnaa, DNA-binding transcriptional dual regulator [Haemophilus influenzae F3031] gi|1169364|sp|P43742|DNAA_HAEIN RecName: Full=Chromosomal replication initiator protein DnaA gi|1574023|gb|AAC22655.1| chromosomal replication initiator protein (dnaA) [Haemophilus influenzae Rd KW20] gi|260093368|gb|EEW77301.1| chromosomal replication initiator protein DnaA [Haemophilus influenzae RdAW] gi|317433001|emb|CBY81372.1| chromosomal replication initiator protein DnaA,DNA-binding transcriptional dual regulator [Haemophilus influenzae F3031] Length = 454 Score = 38.9 bits (89), Expect = 0.71, Method: Compositional matrix adjust. Identities = 31/153 (20%), Positives = 67/153 (43%), Gaps = 11/153 (7%) Query: 92 RFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFP 148 +F +SLD++L+D DI + + FHI NS+ + +++T+ +P Sbjct: 209 QFKKFYRSLDALLVD--------DIQFFAEKEKTQEEFFHIFNSLFETGRQIILTSDRYP 260 Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 L SR I PD + +++K + + + +++A +I QR+ + Sbjct: 261 KEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNMNLPEEVAFFIAQRLRTN 320 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + E ++++ + +G I + LK+ Sbjct: 321 VRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353 >gi|290954759|ref|YP_003485941.1| ABC transporter ATP-binding protein [Streptomyces scabiei 87.22] gi|260644285|emb|CBG67368.1| putative ABC transporter ATP-binding subunit [Streptomyces scabiei 87.22] Length = 597 Score = 38.9 bits (89), Expect = 0.72, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 49/108 (45%), Gaps = 17/108 (15%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P V LVGPSGSGKS LA + RF + TR V L +DL D Sbjct: 367 PGTVTALVGPSGSGKSTLAQLLP------RFFD----------PTRGSVSLGGVDLRDIG 410 Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 L+ +++ + Q D LL T+ ++ V D ++AA + +I Sbjct: 411 SRDLYRLVSFVLQ-DVRLLRTSVAENIALAVPHADRDDIVRAAGLARI 457 >gi|229816997|ref|ZP_04447279.1| hypothetical protein BIFANG_02252 [Bifidobacterium angulatum DSM 20098] gi|229785742|gb|EEP21856.1| hypothetical protein BIFANG_02252 [Bifidobacterium angulatum DSM 20098] Length = 516 Score = 38.9 bits (89), Expect = 0.72, Method: Compositional matrix adjust. Identities = 33/158 (20%), Positives = 67/158 (42%), Gaps = 11/158 (6%) Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMT 143 + R F+ +S+D +LID DI L + Q FH N++HQ + +++ Sbjct: 263 QGRIAEFNRRYRSVDVLLID--------DIQFLGGKEATLEQFFHTFNALHQANKRIVIA 314 Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203 + P + L SR + V + PD + ++ M + I + I + Sbjct: 315 SDVAPKNLKGFEARLISRFDSGLTVDVKPPDLETRIAILRMMASMNHSNIPNDVLDLIAE 374 Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 R ++ E + ++ +A +TR++A + L++ Sbjct: 375 RFTENIRELEGALTRVTAVASLSNQPVTRAMAEQTLQD 412 >gi|145637299|ref|ZP_01792960.1| chromosomal replication initiation protein [Haemophilus influenzae PittHH] gi|145269551|gb|EDK09493.1| chromosomal replication initiation protein [Haemophilus influenzae PittHH] Length = 454 Score = 38.5 bits (88), Expect = 0.74, Method: Compositional matrix adjust. Identities = 31/153 (20%), Positives = 67/153 (43%), Gaps = 11/153 (7%) Query: 92 RFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFP 148 +F +SLD++L+D DI + + FHI NS+ + +++T+ +P Sbjct: 209 QFKKFYRSLDALLVD--------DIQFFAEKEKTQEEFFHIFNSLFETGRQIILTSDRYP 260 Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 L SR I PD + +++K + + + +++A +I QR+ + Sbjct: 261 KEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNMNLPEEVAFFIAQRLRTN 320 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + E ++++ + +G I + LK+ Sbjct: 321 VRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353 >gi|301169967|emb|CBW29571.1| ATPase regulatory factor involved in DnaA inactivation [Haemophilus influenzae 10810] Length = 231 Score = 38.5 bits (88), Expect = 0.74, Method: Compositional matrix adjust. Identities = 43/182 (23%), Positives = 86/182 (47%), Gaps = 13/182 (7%) Query: 71 GPSGSGKSCLANIWSDK----SRSTRFSNIAKSL---DSIL--IDTRKPVLLEDIDLLDF 121 G GSGK+ L +S++ R+ + ++KS ++L ++ ++ V L+D+ + Sbjct: 48 GNKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQYFSTAVLENLEQQELVCLDDLQSVIG 107 Query: 122 NDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 ND +F + N I +LL+ +A P + V LPDL SRL + +++ D+ Sbjct: 108 NDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQLNSLTDEQ 167 Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237 KV+ R + + A +++ R+ R + + +D +D +L +T + Sbjct: 168 KIKVLQLAAYQRGFQLSDETANFLITRLARDMHTLFEALDLLDKASLQAQRNLTIPFVKK 227 Query: 238 VL 239 +L Sbjct: 228 IL 229 >gi|124004296|ref|ZP_01689142.1| transposase B of [Microscilla marina ATCC 23134] gi|123990366|gb|EAY29865.1| transposase B of [Microscilla marina ATCC 23134] Length = 247 Score = 38.5 bits (88), Expect = 0.74, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 22/112 (19%) Query: 67 VILVGPSGSGKSCLA----------------NIWSDKSRSTRFSNIAKSLDSILIDTRKP 110 VIL+GPSG+GK+ +A D +R + S++ K+ + K Sbjct: 103 VILMGPSGTGKTFIAAGLAYLALKAGYKAIFRTMEDLARILKLSDMTKNNRAQYNACVKA 162 Query: 111 VLLEDIDLLDFN-----DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 LL DL+ F LFH+I+++H+ SS+++T P W L D Sbjct: 163 ELLVIDDLMMFPIEKKVGQMLFHLIDTLHE-KSSVIITTNKSPKEWAEALDD 213 >gi|149917947|ref|ZP_01906441.1| ABC transporter related protein [Plesiocystis pacifica SIR-1] gi|149821213|gb|EDM80617.1| ABC transporter related protein [Plesiocystis pacifica SIR-1] Length = 241 Score = 38.5 bits (88), Expect = 0.77, Method: Compositional matrix adjust. Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 5/91 (5%) Query: 56 IDSWPSWPSRVVILVGPSGSGKS----CLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV 111 I +W P VV +VGP+G+GK+ CLA + + R + + + + +R Sbjct: 23 IPAWTVAPGSVVGVVGPNGAGKTTLIDCLAGLIRPTEGTVRVVGRDPAAEPMFVRSRAGF 82 Query: 112 LLEDIDLLDFNDTQLFHIINSIH-QYDSSLL 141 + +D L D + +L +++ + +D +L+ Sbjct: 83 MSDDRPLFDLSVARLLRMLSGYYASWDEALV 113 >gi|242021491|ref|XP_002431178.1| proteasome-activating nucleotidase, putative [Pediculus humanus corporis] gi|212516427|gb|EEB18440.1| proteasome-activating nucleotidase, putative [Pediculus humanus corporis] Length = 581 Score = 38.5 bits (88), Expect = 0.79, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 10/79 (12%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSW----------PSRVVILVGPSGSGKSCLANIWSD 86 G+ DD+ A +QA++ + PS PSR ++L GP G+GK+ LA + Sbjct: 303 GVKWDDIAGQHAAKQALQEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTLLARAVAS 362 Query: 87 KSRSTRFSNIAKSLDSILI 105 + +T FS A SL S + Sbjct: 363 ECNATFFSISAASLTSKYV 381 >gi|16273145|ref|NP_439382.1| DNA replication initiation factor [Haemophilus influenzae Rd KW20] gi|260581145|ref|ZP_05848965.1| DnaA regulatory inactivator Hda [Haemophilus influenzae RdAW] gi|6136705|sp|O86235|Y122B_HAEIN RecName: Full=Uncharacterized protein HI_1225.1 gi|3212215|gb|AAC22879.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20] gi|260092173|gb|EEW76116.1| DnaA regulatory inactivator Hda [Haemophilus influenzae RdAW] gi|309972964|gb|ADO96165.1| DNA replication initiation factor Had [Haemophilus influenzae R2846] Length = 231 Score = 38.5 bits (88), Expect = 0.79, Method: Compositional matrix adjust. Identities = 43/182 (23%), Positives = 86/182 (47%), Gaps = 13/182 (7%) Query: 71 GPSGSGKSCLANIWSDK----SRSTRFSNIAKSL---DSIL--IDTRKPVLLEDIDLLDF 121 G GSGK+ L +S++ R+ + ++KS ++L ++ ++ V L+D+ + Sbjct: 48 GDKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQYFSTAVLENLEQQELVCLDDLQSVIG 107 Query: 122 NDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 ND +F + N I +LL+ +A P + V LPDL SRL + +++ D+ Sbjct: 108 NDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQLNSLTDEQ 167 Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237 KV+ R + + A +++ R+ R + + +D +D +L +T + Sbjct: 168 KIKVLQLAAYQRGFQLSDETANFLITRLARDMHTLFEALDLLDKASLQAQRNLTIPFVKK 227 Query: 238 VL 239 +L Sbjct: 228 IL 229 >gi|300114434|ref|YP_003761009.1| DnaA regulatory inactivator Hda [Nitrosococcus watsonii C-113] gi|299540371|gb|ADJ28688.1| DnaA regulatory inactivator Hda [Nitrosococcus watsonii C-113] Length = 232 Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust. Identities = 40/187 (21%), Positives = 79/187 (42%), Gaps = 12/187 (6%) Query: 65 RVVILVGPSGSGKS--CLANIWSDKSRSTRFSNIAKSLDSIL-------IDTRKPVLLED 115 R + L GPSG GK+ LA S R + + I+ ++ V ++D Sbjct: 44 RFLCLWGPSGVGKTHLLLAACQIAAQESERVAYVPLKRVGIMAPEILGGLEAAAFVAIDD 103 Query: 116 IDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 ID + + L H+ N + + LL+ + P + LPDL SRL ++ Sbjct: 104 IDHVAGYRHWEESLLHLYNLLQEEQGRLLLASTDKPSTLHWLLPDLRSRLGWGVGYQLQP 163 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232 DD + A R + + ++A ++++ ER + ++ +++ +++ +T Sbjct: 164 LDDHQKHAALQFQAAKRGLELPDEVAGFLLRHSERDMHSLSSILAQLERASMAAQRRLTV 223 Query: 233 SLAAEVL 239 +VL Sbjct: 224 PFVRQVL 230 >gi|309973507|gb|ADO96708.1| Chromosomal replication initiator protein [Haemophilus influenzae R2846] Length = 454 Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust. Identities = 31/153 (20%), Positives = 67/153 (43%), Gaps = 11/153 (7%) Query: 92 RFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFP 148 +F +SLD++L+D DI + + FHI NS+ + +++T+ +P Sbjct: 209 QFKKFYRSLDALLVD--------DIQFFAEKEKTQEEFFHIFNSLFETGRQIILTSDRYP 260 Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 L SR I PD + +++K + + + +++A +I QR+ + Sbjct: 261 KEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNMNLPEEVAFFIAQRLRTN 320 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + E ++++ + +G I + LK+ Sbjct: 321 VRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353 >gi|301154703|emb|CBW14166.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Haemophilus parainfluenzae T3T1] Length = 455 Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust. Identities = 30/153 (19%), Positives = 67/153 (43%), Gaps = 11/153 (7%) Query: 92 RFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFP 148 +F +SLD++L+D DI + + FHI N++ + +++T+ +P Sbjct: 210 QFKKFYRSLDALLVD--------DIQFFAEKEKTQEEFFHIFNNLFETGRQIILTSDRYP 261 Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 L SR I PD + +++K + + + +++A +I QR+ + Sbjct: 262 KEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHHMELPEEVAFFIAQRLRTN 321 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + E ++++ + +G I + LK+ Sbjct: 322 VRELEGALNRVKAMQDFKGGHIDIDFVRDTLKD 354 >gi|58579624|ref|YP_198640.1| chromosomal replication initiation protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|71151811|sp|Q5H715|DNAA_XANOR RecName: Full=Chromosomal replication initiator protein DnaA gi|58424218|gb|AAW73255.1| chromosomal replication initiator [Xanthomonas oryzae pv. oryzae KACC10331] Length = 443 Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust. Identities = 43/198 (21%), Positives = 78/198 (39%), Gaps = 23/198 (11%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTR-------------FSNIAKSLDSILIDTRK---- 109 ++L G +G GK+ L + R + FS + ++L +D K Sbjct: 144 LLLYGSTGLGKTHLMFAAGNALRQAKPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQ 203 Query: 110 ---PVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 +L++DI D + FH N++ +++T +P P L SRL Sbjct: 204 QIDALLIDDIQFFAGKDRTQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLA 263 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 V I PD + +++ +R I +A I ++M ++ E ++ + A Sbjct: 264 WGLSVAIDPPDFETRAAIVLAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARA 323 Query: 224 LSRGMGITRSLAAEVLKE 241 G IT A E L++ Sbjct: 324 NFTGRSITVEFAQETLRD 341 >gi|159040888|ref|YP_001540140.1| ABC transporter related [Caldivirga maquilingensis IC-167] gi|157919723|gb|ABW01150.1| ABC transporter related [Caldivirga maquilingensis IC-167] Length = 289 Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 20/67 (29%) Query: 62 WPSRVVILVGPSGSGKSCLANIWS--DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 + VVI++GPSGSGKS L NI DK S R V L+D+D+ Sbjct: 36 YRGEVVIIMGPSGSGKSTLLNIMGMLDKPTSGR------------------VYLDDVDVT 77 Query: 120 DFNDTQL 126 D ++ +L Sbjct: 78 DMSENEL 84 >gi|77164694|ref|YP_343219.1| chromosomal replication initiator protein DnaA [Nitrosococcus oceani ATCC 19707] gi|254434656|ref|ZP_05048164.1| chromosomal replication initiator protein DnaA [Nitrosococcus oceani AFC27] gi|76883008|gb|ABA57689.1| regulatory inactivation of DnaA Hda protein [Nitrosococcus oceani ATCC 19707] gi|207090989|gb|EDZ68260.1| chromosomal replication initiator protein DnaA [Nitrosococcus oceani AFC27] Length = 232 Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust. Identities = 40/187 (21%), Positives = 82/187 (43%), Gaps = 12/187 (6%) Query: 65 RVVILVGPSGSGKSCL----ANIWSDKSRSTRFSNIAKSL---DSIL--IDTRKPVLLED 115 R + L GPSG GK+ L I + K + + +++ IL ++ V ++D Sbjct: 44 RFLCLRGPSGVGKTHLLLAACQIAAQKGERVAYVPLKRAVIMAPEILGGLEVAAFVAIDD 103 Query: 116 IDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 ID + + L H+ N + + LL+ + P + LPDL SRL ++ Sbjct: 104 IDHIAGYRHWEESLLHLYNLLQEGRGRLLLASTDKPSTLHWLLPDLRSRLGWGLGYQLQP 163 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232 DD + A R + + ++A ++++ ER + ++ +++ +++ +T Sbjct: 164 LDDHQKHAALQFQAAKRGLELPDEVAGFLLRHSERDMHSLSSILAQLERASMAAQRRLTV 223 Query: 233 SLAAEVL 239 +VL Sbjct: 224 PFVRQVL 230 >gi|85857846|ref|YP_460048.1| chromosomal replication initiator protein [Syntrophus aciditrophicus SB] gi|85720937|gb|ABC75880.1| chromosomal replication initiator protein [Syntrophus aciditrophicus SB] Length = 457 Score = 38.5 bits (88), Expect = 0.86, Method: Compositional matrix adjust. Identities = 31/138 (22%), Positives = 61/138 (44%), Gaps = 11/138 (7%) Query: 111 VLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA--- 164 +L++DI + + + FH N++H +++T+ FP +P+L RL++ Sbjct: 219 LLMDDIQFIAGKERTQEEFFHTFNTLHDSGKQIVVTSDKFPKD----IPNLEGRLRSRFE 274 Query: 165 -ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + I P+ + ++ K + I I +A YI E ++ E + ++ + Sbjct: 275 WGLIADIQPPEIETKIAILEKKAQENNIHIPTNVAYYISSHAESNIRELEGFLVRIAAYS 334 Query: 224 LSRGMGITRSLAAEVLKE 241 G I L EVLK+ Sbjct: 335 SVTGRNIDLDLVKEVLKD 352 >gi|84621658|ref|YP_449030.1| chromosomal replication initiation protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188574271|ref|YP_001911200.1| chromosomal replication initiation protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|123725613|sp|Q2P9M1|DNAA_XANOM RecName: Full=Chromosomal replication initiator protein DnaA gi|226735864|sp|B2SUW3|DNAA_XANOP RecName: Full=Chromosomal replication initiator protein DnaA gi|84365598|dbj|BAE66756.1| chromosomal replication initiator [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188518723|gb|ACD56668.1| chromosomal replication initiator protein DnaA [Xanthomonas oryzae pv. oryzae PXO99A] Length = 442 Score = 38.5 bits (88), Expect = 0.87, Method: Compositional matrix adjust. Identities = 43/198 (21%), Positives = 78/198 (39%), Gaps = 23/198 (11%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTR-------------FSNIAKSLDSILIDTRK---- 109 ++L G +G GK+ L + R + FS + ++L +D K Sbjct: 143 LLLYGSTGLGKTHLMFAAGNALRQAKPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQ 202 Query: 110 ---PVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 +L++DI D + FH N++ +++T +P P L SRL Sbjct: 203 QIDALLIDDIQFFAGKDRTQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLA 262 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 V I PD + +++ +R I +A I ++M ++ E ++ + A Sbjct: 263 WGLSVAIDPPDFETRAAIVLAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARA 322 Query: 224 LSRGMGITRSLAAEVLKE 241 G IT A E L++ Sbjct: 323 NFTGRSITVEFAQETLRD 340 >gi|308048975|ref|YP_003912541.1| regulatory inactivation of DnaA Hda protein [Ferrimonas balearica DSM 9799] gi|307631165|gb|ADN75467.1| regulatory inactivation of DnaA Hda protein [Ferrimonas balearica DSM 9799] Length = 235 Score = 38.5 bits (88), Expect = 0.88, Method: Compositional matrix adjust. Identities = 46/195 (23%), Positives = 86/195 (44%), Gaps = 27/195 (13%) Query: 66 VVILVGPSGSGKSCLAN----IWSDKSRSTRFS--NIAKSLDSILIDTRKPVLLEDIDLL 119 V L G SG++ L + S+ RST + I S+ ++D LED+ L+ Sbjct: 47 VTYLWGSGKSGRTHLLHATCVYASELGRSTFYLPLGIHASMSPAILDG-----LEDLSLV 101 Query: 120 DFND-----------TQLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATV 167 +D LF++ N + + + L+++AR G LPDL SRL Sbjct: 102 CLDDIDEVCRHPIWEEALFNLYNRVREKGTCRLVVSARAPANQAGFLLPDLVSRLNWGIH 161 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 ++ DD + + R + +++++ +++ R+ R L +++D++D + Sbjct: 162 YQLHPLSDDAKLAALQRRAKMRGLDLEEEVGRFLMTRLARDLRTLFEVLDRLDKAS---- 217 Query: 228 MGITRSLAAEVLKET 242 M R L +KET Sbjct: 218 MVAQRRLTIPFVKET 232 >gi|332830222|gb|EGK02850.1| chromosomal replication initiator protein DnaA [Dysgonomonas gadei ATCC BAA-286] Length = 467 Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust. Identities = 27/125 (21%), Positives = 53/125 (42%), Gaps = 8/125 (6%) Query: 84 WSDKSR---STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140 ++D R + F N + +D ++ID + ++ ++ LFHI N +HQ + L Sbjct: 209 YADAGRYNTTNDFINFYQGIDVLIIDD-----IHELAGIERTQNTLFHIFNHLHQNNKQL 263 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 ++T+ P L +R + KI PD K++ + I + + Y Sbjct: 264 ILTSDKSPSELQGVEERLLTRFRWGLTTKIDHPDKGLRLKILQNKILHDGLSIPEDVVDY 323 Query: 201 IVQRM 205 I + + Sbjct: 324 IAENV 328 >gi|19704424|ref|NP_603986.1| hypothetical protein FN1089 [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|30173455|sp|Q8REL1|Y1089_FUSNN RecName: Full=UPF0042 nucleotide-binding protein FN1089 gi|19714684|gb|AAL95285.1| ATP-binding protein (contains P-loop) [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 290 Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 2/72 (2%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 ++I+ G SG+GK+ NI D S T N+ L+ L+DT L ID+ F +T Sbjct: 5 HIIIVTGLSGAGKTTALNILEDMSYYT-IDNLPLGLEKSLLDTEIEKLAVGIDIRTFKNT 63 Query: 125 Q-LFHIINSIHQ 135 + F IN I + Sbjct: 64 KDFFTFINYIKE 75 >gi|313886600|ref|ZP_07820313.1| chromosomal replication initiator protein DnaA [Porphyromonas asaccharolytica PR426713P-I] gi|312923956|gb|EFR34752.1| chromosomal replication initiator protein DnaA [Porphyromonas asaccharolytica PR426713P-I] Length = 475 Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust. Identities = 36/202 (17%), Positives = 82/202 (40%), Gaps = 33/202 (16%) Query: 69 LVGPSGSGKSCLAN---------------------------IWSDKSRSTR-FSNIAKSL 100 + GPSG GK+ L + + + ++ +T F N + + Sbjct: 179 IYGPSGVGKTHLCHAIGLRIRELYPELKVLYVSSHMFEMQYVAATRANTTNDFINFYQQV 238 Query: 101 DSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 D +LID + ++ + L F F + N ++ +++T+ T PV+ L S Sbjct: 239 DVLLIDDIQGLIAKKKTQLTF-----FQVFNHLYMLGKQIVLTSDTAPVNLAGLEERLIS 293 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 R+ + +++ PD D + + + + +++ YI + + S+ + + + Sbjct: 294 RIAGSLTIEVERPDYDLRREYLRHKSEESGSILPQEMIDYIARTVTSSIRGLQGVFFSLI 353 Query: 221 NLALSRGMGITRSLAAEVLKET 242 A G +T S +++ +T Sbjct: 354 TRAAVEGCDVTSSFVKKIVSQT 375 >gi|321464991|gb|EFX75995.1| hypothetical protein DAPPUDRAFT_322816 [Daphnia pulex] Length = 617 Score = 38.5 bits (88), Expect = 0.91, Method: Compositional matrix adjust. Identities = 19/40 (47%), Positives = 25/40 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P R ++L GP G+GK+ + + KSRST FS A SL S Sbjct: 375 PPRGILLFGPPGTGKTLIGKCIASKSRSTFFSISASSLTS 414 >gi|13542147|ref|NP_111835.1| 3-dehydroquinate synthase [Thermoplasma volcanium GSS1] gi|22256709|sp|Q978S6|AROB_THEVO RecName: Full=3-dehydroquinate synthase gi|14325578|dbj|BAB60481.1| 3-dehydroquinate synthase [Thermoplasma volcanium GSS1] Length = 360 Score = 38.5 bits (88), Expect = 0.92, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 9/94 (9%) Query: 105 IDTRKPVLLEDIDLLDF--NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 +DT++ V+ + D + F D + H+ +YDS ++M ++T + +PD+ S Sbjct: 1 MDTQRFVITMNGDNISFIVGDNAINHLSEEAGKYDSIVIMISKTVEEMYANHIPDVGSF- 59 Query: 163 KAATVVKISLPDDDFLEKV-----IVKMFADRQI 191 +VVKISL D + L+ + IVK+ +R++ Sbjct: 60 -GNSVVKISLNDGESLKSLRNYQKIVKVLLERKV 92 >gi|332299202|ref|YP_004441123.1| Chromosomal replication initiator protein dnaA [Porphyromonas asaccharolytica DSM 20707] gi|332176265|gb|AEE11955.1| Chromosomal replication initiator protein dnaA [Porphyromonas asaccharolytica DSM 20707] Length = 475 Score = 38.5 bits (88), Expect = 0.93, Method: Compositional matrix adjust. Identities = 36/202 (17%), Positives = 82/202 (40%), Gaps = 33/202 (16%) Query: 69 LVGPSGSGKSCLAN---------------------------IWSDKSRSTR-FSNIAKSL 100 + GPSG GK+ L + + + ++ +T F N + + Sbjct: 179 IYGPSGVGKTHLCHAIGLRIRELYPELKVLYVSSHMFEMQYVAATRANTTNDFINFYQQV 238 Query: 101 DSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 D +LID + ++ + L F F + N ++ +++T+ T PV+ L S Sbjct: 239 DVLLIDDIQGLIAKKKTQLTF-----FQVFNHLYMLGKQIVLTSDTAPVNLAGLEERLIS 293 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 R+ + +++ PD D + + + + +++ YI + + S+ + + + Sbjct: 294 RIAGSLTIEVERPDYDLRREYLRHKSEESGSILPQEMIDYIARTVTSSIRGLQGVFFSLI 353 Query: 221 NLALSRGMGITRSLAAEVLKET 242 A G +T S +++ +T Sbjct: 354 TRAAVEGCDVTSSFVKKIVSQT 375 >gi|156331070|ref|XP_001619132.1| hypothetical protein NEMVEDRAFT_v1g224466 [Nematostella vectensis] gi|156201713|gb|EDO27032.1| predicted protein [Nematostella vectensis] Length = 196 Score = 38.5 bits (88), Expect = 0.95, Method: Compositional matrix adjust. Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 27/87 (31%) Query: 64 SRVVILVGPSGSGKSCLANIW---------------------SDKSRSTRFSNIAKSLDS 102 SR ++++G +GSGKSCL + W +D + R+ NIA +L Sbjct: 82 SRPIVVLGNAGSGKSCLLSNWITAHQLRHPTDRALYGEDAIQTDAGAAERYVNIANTLAC 141 Query: 103 ILIDTRKPVLLEDIDLLDFNDTQLFHI 129 + +DT E D D ++ HI Sbjct: 142 LYVDT------EQFDKADTMHREVLHI 162 >gi|331005288|ref|ZP_08328678.1| Chromosomal replication initiator protein DnaA [gamma proteobacterium IMCC1989] gi|330420898|gb|EGG95174.1| Chromosomal replication initiator protein DnaA [gamma proteobacterium IMCC1989] Length = 226 Score = 38.1 bits (87), Expect = 0.96, Method: Compositional matrix adjust. Identities = 33/138 (23%), Positives = 59/138 (42%), Gaps = 11/138 (7%) Query: 113 LEDIDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161 L+ ID++ +D Q +FH+ N + L++ ++ P G+ L DL SR Sbjct: 89 LDTIDVVILDDVQCICGVTEWELAVFHLYNRLRDGQKQLVIGSQIAPRELGISLADLHSR 148 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 L+ + D+ KV++ + + I + +I R L L+ K+D+ Sbjct: 149 LQWGMSYSLEALSDEDKRKVLILRSQNLGLRISDDVIQFIFNHYSRDLRQLMTLLHKIDS 208 Query: 222 LALSRGMGITRSLAAEVL 239 +LS IT +VL Sbjct: 209 ASLSEQRHITIPFVKQVL 226 >gi|76808798|ref|YP_332767.1| lipid A export ATP-binding/permease MsbA [Burkholderia pseudomallei 1710b] gi|126440231|ref|YP_001058247.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia pseudomallei 668] gi|126451380|ref|YP_001079903.1| ABC transporter, permease/ATP-binding protein [Burkholderia mallei NCTC 10247] gi|254202192|ref|ZP_04908555.1| ABC transporter, permease/ATP-binding protein [Burkholderia mallei FMH] gi|76578251|gb|ABA47726.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia pseudomallei 1710b] gi|126219724|gb|ABN83230.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia pseudomallei 668] gi|126244250|gb|ABO07343.1| ABC transporter, permease/ATP-binding protein [Burkholderia mallei NCTC 10247] gi|147746439|gb|EDK53516.1| ABC transporter, permease/ATP-binding protein [Burkholderia mallei FMH] Length = 575 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 5/71 (7%) Query: 58 SWPSWPSRVVILVGPSGSGKSCLANI----WSDKSRSTRFSNIAKSLDSILIDTRKPVLL 113 S+ P +V L GPSGSGK+ L N+ + S S R +A S L D R + + Sbjct: 355 SFTVAPGEMVALAGPSGSGKTTLVNLLPRFFDPSSGSVRVDGVALPEYS-LRDLRNQIAM 413 Query: 114 EDIDLLDFNDT 124 D++ FNDT Sbjct: 414 VSQDVVLFNDT 424 >gi|53725482|ref|YP_103507.1| ABC transporter permease/ATP-binding protein [Burkholderia mallei ATCC 23344] gi|126454551|ref|YP_001065486.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia pseudomallei 1106a] gi|167718739|ref|ZP_02401975.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia pseudomallei DM98] gi|167737757|ref|ZP_02410531.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia pseudomallei 14] gi|167814914|ref|ZP_02446594.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia pseudomallei 91] gi|167823356|ref|ZP_02454827.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia pseudomallei 9] gi|167893448|ref|ZP_02480850.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia pseudomallei 7894] gi|167910138|ref|ZP_02497229.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia pseudomallei 112] gi|167918168|ref|ZP_02505259.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia pseudomallei BCC215] gi|52428905|gb|AAU49498.1| ABC transporter, permease/ATP-binding protein [Burkholderia mallei ATCC 23344] gi|126228193|gb|ABN91733.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia pseudomallei 1106a] Length = 574 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 5/71 (7%) Query: 58 SWPSWPSRVVILVGPSGSGKSCLANI----WSDKSRSTRFSNIAKSLDSILIDTRKPVLL 113 S+ P +V L GPSGSGK+ L N+ + S S R +A S L D R + + Sbjct: 354 SFTVAPGEMVALAGPSGSGKTTLVNLLPRFFDPSSGSVRVDGVALPEYS-LRDLRNQIAM 412 Query: 114 EDIDLLDFNDT 124 D++ FNDT Sbjct: 413 VSQDVVLFNDT 423 >gi|299533943|ref|ZP_07047304.1| Chromosomal replication initiator, DnaA [Comamonas testosteroni S44] gi|298718070|gb|EFI59066.1| Chromosomal replication initiator, DnaA [Comamonas testosteroni S44] Length = 232 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 42/180 (23%), Positives = 77/180 (42%), Gaps = 8/180 (4%) Query: 69 LVGPSGSGKSCLANIWSDKSRS----TRFSNIAKSLDSILIDTRKPVLLEDIDLLD-FND 123 L G +GSGKS L + R + + + + VL++D+D+ F Sbjct: 51 LWGEAGSGKSHLLKAVREALREQGAMVGWMDASTPFPPEFDERWAAVLMDDVDIYTPFQQ 110 Query: 124 TQLFHIINSIHQYDSSL---LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 + F+ + + L ++ A PV+ DL +RL V ++ L D+ Sbjct: 111 ARAFNWFVNATSPATGLPRWVLAAGQLPVADLKMREDLRTRLGWGHVYQLHLLDESARRA 170 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 V+ + R +F+ ++ Y+++R R L +L+D +D AL IT L +L+ Sbjct: 171 VLRQEADARGVFLSDEVMDYMLRRFSRDLGSLMQLLDMLDGFALRNKRAITIPLLKTMLE 230 >gi|167901902|ref|ZP_02489107.1| ABC transporter, permease/ATP-binding protein [Burkholderia pseudomallei NCTC 13177] Length = 570 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 5/71 (7%) Query: 58 SWPSWPSRVVILVGPSGSGKSCLANI----WSDKSRSTRFSNIAKSLDSILIDTRKPVLL 113 S+ P +V L GPSGSGK+ L N+ + S S R +A S L D R + + Sbjct: 350 SFTVAPGEMVALAGPSGSGKTTLVNLLPRFFDPSSGSVRVDGVALPEYS-LRDLRNQIAM 408 Query: 114 EDIDLLDFNDT 124 D++ FNDT Sbjct: 409 VSQDVVLFNDT 419 >gi|325577775|ref|ZP_08148050.1| ribosomal subunit interface protein [Haemophilus parainfluenzae ATCC 33392] gi|325160520|gb|EGC72646.1| ribosomal subunit interface protein [Haemophilus parainfluenzae ATCC 33392] Length = 455 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 30/153 (19%), Positives = 67/153 (43%), Gaps = 11/153 (7%) Query: 92 RFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFP 148 +F +SLD++L+D DI + + FHI N++ + +++T+ +P Sbjct: 210 QFKKFYRSLDALLVD--------DIQFFAEKEKTQEEFFHIFNNLFETGRQIILTSDRYP 261 Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 L SR I PD + +++K + + + +++A +I QR+ + Sbjct: 262 KEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHHMELPEEVAFFIAQRLRTN 321 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + E ++++ + +G I + LK+ Sbjct: 322 VRELEGALNRVKAMQDFKGGHIDIDFVRDTLKD 354 >gi|167844906|ref|ZP_02470414.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia pseudomallei B7210] Length = 574 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 5/71 (7%) Query: 58 SWPSWPSRVVILVGPSGSGKSCLANI----WSDKSRSTRFSNIAKSLDSILIDTRKPVLL 113 S+ P +V L GPSGSGK+ L N+ + S S R +A S L D R + + Sbjct: 354 SFTVAPGEMVALAGPSGSGKTTLVNLLPRFFDPSSGSVRVDGVALPEYS-LRDLRNQIAM 412 Query: 114 EDIDLLDFNDT 124 D++ FNDT Sbjct: 413 VSQDVVLFNDT 423 >gi|66766353|ref|YP_241115.1| chromosomal replication initiation protein [Xanthomonas campestris pv. campestris str. 8004] gi|81307653|sp|Q4V0S8|DNAA_XANC8 RecName: Full=Chromosomal replication initiator protein DnaA gi|66571685|gb|AAY47095.1| chromosomal replication initiator [Xanthomonas campestris pv. campestris str. 8004] Length = 442 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 43/198 (21%), Positives = 78/198 (39%), Gaps = 23/198 (11%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTR-------------FSNIAKSLDSILIDTRK---- 109 ++L G +G GK+ L + R FS + ++L +D K Sbjct: 143 LLLYGSTGLGKTHLMFAAGNALRQANPAAKVMYLRSEQFFSAMIRALHDKAMDQFKRQFH 202 Query: 110 ---PVLLEDIDL---LDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 +L++DI +D + FH N++ +++T +P P L SRL Sbjct: 203 QIDALLIDDIQFFAGMDRTQEEFFHTFNALFDGRQHIILTCDRYPREVEGLEPRLKSRLA 262 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 V I PD + +++ +R I +A I ++M ++ E ++ + A Sbjct: 263 WGLSVAIDPPDFETRAAIVLAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARA 322 Query: 224 LSRGMGITRSLAAEVLKE 241 G IT A E L++ Sbjct: 323 NFTGRSITVEFAQETLRD 340 >gi|221065684|ref|ZP_03541789.1| DnaA regulatory inactivator Hda [Comamonas testosteroni KF-1] gi|264679763|ref|YP_003279672.1| Chromosomal replication initiator, DnaA [Comamonas testosteroni CNB-2] gi|220710707|gb|EED66075.1| DnaA regulatory inactivator Hda [Comamonas testosteroni KF-1] gi|262210278|gb|ACY34376.1| Chromosomal replication initiator, DnaA [Comamonas testosteroni CNB-2] Length = 235 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 42/180 (23%), Positives = 77/180 (42%), Gaps = 8/180 (4%) Query: 69 LVGPSGSGKSCLANIWSDKSRS----TRFSNIAKSLDSILIDTRKPVLLEDIDLLD-FND 123 L G +GSGKS L + R + + + + VL++D+D+ F Sbjct: 54 LWGEAGSGKSHLLKAVREALREQGAMVGWMDASTPFPPEFDERWAAVLMDDVDIYTPFQQ 113 Query: 124 TQLFHIINSIHQYDSSL---LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 + F+ + + L ++ A PV+ DL +RL V ++ L D+ Sbjct: 114 ARAFNWFVNATSPATGLPRWVLAAGQLPVADLKMREDLRTRLGWGHVYQLHLLDESARRA 173 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 V+ + R +F+ ++ Y+++R R L +L+D +D AL IT L +L+ Sbjct: 174 VLRQEADARGVFLSDEVMDYMLRRFSRDLGSLMQLLDMLDGFALRNKRAITIPLLKTMLE 233 >gi|78045557|ref|YP_361732.1| chromosomal replication initiation protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|123744129|sp|Q3BZT1|DNAA_XANC5 RecName: Full=Chromosomal replication initiator protein DnaA gi|78033987|emb|CAJ21632.1| chromosomal replication initiator protein DnaA [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 442 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 50/235 (21%), Positives = 91/235 (38%), Gaps = 27/235 (11%) Query: 30 FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR 89 ++F + + L + +AI+ A R D ++L G +G GK+ L + R Sbjct: 110 YTFANFVEGRSNQLGLAAAIQAAQRPGDR----AHNPLLLYGSTGLGKTHLMFAAGNALR 165 Query: 90 STR-------------FSNIAKSLDSILIDTRK-------PVLLEDIDLL---DFNDTQL 126 FS + ++L +D K +L++DI D + Sbjct: 166 QANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQQIDALLIDDIQFFAGKDRTQEEF 225 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH N++ +++T +P P L SRL V I PD + +++ Sbjct: 226 FHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLSVAIDPPDFETRAAIVLAKA 285 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 +R I +A I ++M ++ E ++ + A G IT A E L++ Sbjct: 286 RERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARANFTGRSITVEFAQETLRD 340 >gi|226952106|ref|ZP_03822570.1| DnaA family chromosomal replication initiator [Acinetobacter sp. ATCC 27244] gi|294651081|ref|ZP_06728418.1| DnaA-type chromosomal replication initiator [Acinetobacter haemolyticus ATCC 19194] gi|226837162|gb|EEH69545.1| DnaA family chromosomal replication initiator [Acinetobacter sp. ATCC 27244] gi|292823030|gb|EFF81896.1| DnaA-type chromosomal replication initiator [Acinetobacter haemolyticus ATCC 19194] Length = 232 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 21/155 (13%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLE 114 SR+ I G +G+GKS L + D I SL ++L ++ V L+ Sbjct: 40 SRLYI-YGGAGTGKSHLLSAICDSYLELGRPAIKVSLLALLDAPIEAITALEFYDLVALD 98 Query: 115 DIDLLD---FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 DID + +FH++N+ ++ L+ ++R P+ + LPDL SRL A VK Sbjct: 99 DIDAISGVPHWQKAVFHLMNN---HEGQLVFSSRVAPIELKLELPDLQSRLTQAVSVKA- 154 Query: 172 LPDD-DFLEK--VIVKMFADRQIFIDKKLAAYIVQ 203 P+ F+++ ++ + R I D+++ Y++ Sbjct: 155 -PNGSSFVDRQALLQSVMTRRGIHFDQQIVDYLLH 188 >gi|53718753|ref|YP_107739.1| putative ABC transporter ATP-binding protein [Burkholderia pseudomallei K96243] gi|121600997|ref|YP_992385.1| ABC transporter, permease/ATP-binding protein [Burkholderia mallei SAVP1] gi|124383689|ref|YP_001026813.1| ABC transporter, permease/ATP-binding protein [Burkholderia mallei NCTC 10229] gi|134281193|ref|ZP_01767902.1| lipid A export permease/ATP-binding protein MsbA [Burkholderia pseudomallei 305] gi|217420284|ref|ZP_03451790.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia pseudomallei 576] gi|226195328|ref|ZP_03790917.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia pseudomallei Pakistan 9] gi|237811496|ref|YP_002895947.1| lipid A export permease/ATP-binding protein MsbA [Burkholderia pseudomallei MSHR346] gi|238563095|ref|ZP_00439427.2| lipid A export permease/ATP-binding protein MsbA [Burkholderia mallei GB8 horse 4] gi|242317469|ref|ZP_04816485.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia pseudomallei 1106b] gi|251767293|ref|ZP_02266692.2| ABC transporter, permease/ATP-binding protein [Burkholderia mallei PRL-20] gi|254175688|ref|ZP_04882348.1| ABC transporter, permease/ATP-binding protein [Burkholderia mallei ATCC 10399] gi|254181268|ref|ZP_04887865.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia pseudomallei 1655] gi|254190628|ref|ZP_04897135.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia pseudomallei Pasteur 52237] gi|254195011|ref|ZP_04901440.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia pseudomallei S13] gi|254207519|ref|ZP_04913869.1| ABC transporter, permease/ATP-binding protein [Burkholderia mallei JHU] gi|254261650|ref|ZP_04952704.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia pseudomallei 1710a] gi|254298454|ref|ZP_04965906.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia pseudomallei 406e] gi|254359935|ref|ZP_04976205.1| ABC transporter, permease/ATP-binding protein [Burkholderia mallei 2002721280] gi|67468746|sp|Q62IG3|MSBA_BURMA RecName: Full=Lipid A export ATP-binding/permease protein MsbA gi|67468747|sp|Q63VX7|MSBA_BURPS RecName: Full=Lipid A export ATP-binding/permease protein MsbA gi|122064493|sp|Q3JUI6|MSBA_BURP1 RecName: Full=Lipid A export ATP-binding/permease protein MsbA gi|52209167|emb|CAH35111.1| putative ABC transport system, ATP-binding protein [Burkholderia pseudomallei K96243] gi|121229807|gb|ABM52325.1| ABC transporter, permease/ATP-binding protein [Burkholderia mallei SAVP1] gi|124291709|gb|ABN00978.1| ABC transporter, permease/ATP-binding protein [Burkholderia mallei NCTC 10229] gi|134247499|gb|EBA47584.1| lipid A export permease/ATP-binding protein MsbA [Burkholderia pseudomallei 305] gi|147751413|gb|EDK58480.1| ABC transporter, permease/ATP-binding protein [Burkholderia mallei JHU] gi|148029175|gb|EDK87080.1| ABC transporter, permease/ATP-binding protein [Burkholderia mallei 2002721280] gi|157808143|gb|EDO85313.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia pseudomallei 406e] gi|157938303|gb|EDO93973.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia pseudomallei Pasteur 52237] gi|160696732|gb|EDP86702.1| ABC transporter, permease/ATP-binding protein [Burkholderia mallei ATCC 10399] gi|169651759|gb|EDS84452.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia pseudomallei S13] gi|184211806|gb|EDU08849.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia pseudomallei 1655] gi|217397588|gb|EEC37604.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia pseudomallei 576] gi|225932530|gb|EEH28528.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia pseudomallei Pakistan 9] gi|237506047|gb|ACQ98365.1| lipid A export permease/ATP-binding protein MsbA [Burkholderia pseudomallei MSHR346] gi|238521385|gb|EEP84837.1| lipid A export permease/ATP-binding protein MsbA [Burkholderia mallei GB8 horse 4] gi|242140708|gb|EES27110.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia pseudomallei 1106b] gi|243063198|gb|EES45384.1| ABC transporter, permease/ATP-binding protein [Burkholderia mallei PRL-20] gi|254220339|gb|EET09723.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia pseudomallei 1710a] Length = 596 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 5/71 (7%) Query: 58 SWPSWPSRVVILVGPSGSGKSCLANI----WSDKSRSTRFSNIAKSLDSILIDTRKPVLL 113 S+ P +V L GPSGSGK+ L N+ + S S R +A S L D R + + Sbjct: 376 SFTVAPGEMVALAGPSGSGKTTLVNLLPRFFDPSSGSVRVDGVALPEYS-LRDLRNQIAM 434 Query: 114 EDIDLLDFNDT 124 D++ FNDT Sbjct: 435 VSQDVVLFNDT 445 >gi|330721534|gb|EGG99570.1| Chromosomal replication initiator protein DnaA [gamma proteobacterium IMCC2047] Length = 91 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 4/93 (4%) Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211 V LPDL +RL + V ++ D+ +++ ++ + + + A YI+ R ERS+ Sbjct: 2 AVQLPDLLTRLASCAVFQVKTLSDEGKVRLLCDRADEKGVELPVESAQYILNRSERSIGR 61 Query: 212 AEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 +++D++D +LS G R L +KET + Sbjct: 62 LLEILDRLDQSSLSAG----RKLTIPFIKETMR 90 >gi|225028838|ref|ZP_03718030.1| hypothetical protein EUBHAL_03125 [Eubacterium hallii DSM 3353] gi|224953834|gb|EEG35043.1| hypothetical protein EUBHAL_03125 [Eubacterium hallii DSM 3353] Length = 448 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 44/211 (20%), Positives = 85/211 (40%), Gaps = 27/211 (12%) Query: 60 PSWPSRVVILVGPSGSGKSCL-----ANIWSDKS-------RSTRFSNIAKSLDSILIDT 107 P + L G +G GK+ L +I +++ S +F+N + +DS+ D Sbjct: 141 PGGAYNPLFLYGGAGLGKTHLMHSIAHHIINNRPDLRVLYVTSEKFTN--ELIDSLKHDK 198 Query: 108 RKPVL--LEDIDLLDFNDTQL-----------FHIINSIHQYDSSLLMTARTFPVSWGVC 154 K +ID+L +D Q FH N +H+ +++++ P Sbjct: 199 NKEFRDKYRNIDVLLIDDIQFIIGKESTQEEFFHTFNELHEAKKQIVISSDKHPREIATL 258 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 L SR + I PD + ++ K + I++++ Y+ + ++ E Sbjct: 259 EERLRSRFEWGITADIQPPDYETKMAILKKRAELEHLDINQEVMQYVATNINSNIRELEG 318 Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 ++K+ A +T LA LK+T +C Sbjct: 319 ALNKIYVFANLEKKPVTLELAENALKDTIEC 349 >gi|254448991|ref|ZP_05062445.1| DnaA regulatory inactivator Hda [gamma proteobacterium HTCC5015] gi|198261385|gb|EDY85676.1| DnaA regulatory inactivator Hda [gamma proteobacterium HTCC5015] Length = 234 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 29/130 (22%), Positives = 59/130 (45%), Gaps = 3/130 (2%) Query: 105 IDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161 ++ ++ V ++DI ++ + +F +IN + D+ LLM++ S L DL SR Sbjct: 94 LEQQQLVCIDDIHVIAGQAGWEEAVFDLINRCREQDTRLLMSSSIPASSHAFELGDLRSR 153 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 L V+++ D + + R FI ++ Y+ RS+ F ++++D Sbjct: 154 LAWGPVLQLHELQQDEKWQWLQARAEYRGFFISEESGQYLFAHYPRSMAFLNYALEELDR 213 Query: 222 LALSRGMGIT 231 + L +T Sbjct: 214 ITLQTQRKVT 223 >gi|326435411|gb|EGD80981.1| spastin [Salpingoeca sp. ATCC 50818] Length = 492 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 10/76 (13%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSW----------PSRVVILVGPSGSGKSCLANIWSD 86 G++ DD++ ++A+R I WP+ P++ ++L GP G+GK+ LA + Sbjct: 216 GVTMDDVIGLKKAKEALREIVIWPALRPELFQGLRAPAKGLLLFGPPGNGKTMLAKAVAH 275 Query: 87 KSRSTRFSNIAKSLDS 102 ++ T F+ A SL S Sbjct: 276 SAQCTFFNISASSLTS 291 >gi|302404251|ref|XP_002999963.1| SAP1 [Verticillium albo-atrum VaMs.102] gi|261361145|gb|EEY23573.1| SAP1 [Verticillium albo-atrum VaMs.102] Length = 783 Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 20/40 (50%), Positives = 27/40 (67%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P+R ++L GP G+GK+ LA + +SRST FS A SL S Sbjct: 527 PARGMLLFGPPGTGKTMLARAVATESRSTFFSISASSLTS 566 >gi|325577813|ref|ZP_08148088.1| DnaA regulatory inactivator Hda [Haemophilus parainfluenzae ATCC 33392] gi|325160558|gb|EGC72684.1| DnaA regulatory inactivator Hda [Haemophilus parainfluenzae ATCC 33392] Length = 231 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 46/185 (24%), Positives = 85/185 (45%), Gaps = 15/185 (8%) Query: 69 LVGPSGSGKS----CLANIWSDKSRSTRFSNIAKSL---DSIL--IDTRKPVLLEDIDLL 119 L G GK+ L N + + RS + ++KS ++ ++ ++ V L+D+ + Sbjct: 46 LWGSQSVGKTHLLRALCNEYIQQQRSAIYVPLSKSQYFSTAVFENLEQQELVCLDDLQTI 105 Query: 120 DFN---DTQLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 N + LF + N I +LL+ +A P S V LPDL SRLK ++ +P Sbjct: 106 IGNSEWEIALFDLFNRIKTNGKTLLVVSADQSPTSLPVKLPDLASRLKWGESYQL-IPLS 164 Query: 176 DFLEKVIVKMFA-DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234 D + ++K A R I + A +I R++R + ++ + ++D +L +T Sbjct: 165 DEQKFAVLKQNAHQRGIILSDDTANFIFTRLDRDMATLKEALVQLDKASLQAKRNLTIPF 224 Query: 235 AAEVL 239 +L Sbjct: 225 VKSIL 229 >gi|307544864|ref|YP_003897343.1| ABC transporter ATP-binding protein [Halomonas elongata DSM 2581] gi|307216888|emb|CBV42158.1| ABC-type transport system ATP-binding protein [Halomonas elongata DSM 2581] Length = 279 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 40/184 (21%), Positives = 72/184 (39%), Gaps = 15/184 (8%) Query: 69 LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFH 128 ++GP+G+GK+ + +I + K+R S S +L + I F +F Sbjct: 62 IIGPNGAGKTTMMDIITGKTRPDTGSAWFGSRHDLLTMNEPEIASLGIG-RKFQKPTVFE 120 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA--ATVVKISL----------PDDD 176 + + ++ R P ++C R++ AT+ I L Sbjct: 121 ALTVFENLELAMAADKRILPTLTARLTGEVCERIEEVLATIGLIELRHAPAGILSHGQKQ 180 Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN--LALSRGMGITRSL 234 +LE ++ M R + +D+ +A Q MER+ L K + + MG RS+ Sbjct: 181 WLEIGMLLMQRPRLLLVDEPVAGMTEQEMERTAELLTGLAGKGKQSVVVVEHDMGFVRSI 240 Query: 235 AAEV 238 A V Sbjct: 241 ARTV 244 >gi|262089713|gb|ACY24808.1| DnaA family protein [uncultured organism] Length = 237 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 2/83 (2%) Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI-SLPDDDFLEKVIVK 184 +FH+ N + LL+ A P + L DL SRL+ ++ SL D+D + + ++ Sbjct: 122 IFHLYNRLRDAGKCLLVAAEHSPRELALSLEDLRSRLQWGLTYQVHSLTDEDKQQALQMR 181 Query: 185 MFADRQIFIDKKLAAYIVQRMER 207 A R + + +A YI+QR+ R Sbjct: 182 ARA-RGLELSDDVAQYIIQRLPR 203 >gi|148240934|ref|YP_001220435.1| ABC transporter ATP-binding protein [Bradyrhizobium sp. BTAi1] gi|146411310|gb|ABQ39763.1| Putative ABC transporter (ATP binding protein) [Bradyrhizobium sp. BTAi1] Length = 235 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 14/84 (16%) Query: 66 VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT- 124 VV+L+GPSGSGK+ L NI R T + LD L D LED +L + Sbjct: 37 VVVLLGPSGSGKTTLLNIMGGLDRPTSGRLFFRDLD--LTD------LEDRELTKYRRDH 88 Query: 125 -----QLFHIINSIHQYDSSLLMT 143 Q ++++ S+ Y++ L+T Sbjct: 89 VGFVFQFYNLVPSLTAYENVALVT 112 >gi|313835170|gb|EFS72884.1| replication initiator protein DnaA [Propionibacterium acnes HL037PA2] gi|314929146|gb|EFS92977.1| replication initiator protein DnaA [Propionibacterium acnes HL044PA1] gi|314970905|gb|EFT15003.1| replication initiator protein DnaA [Propionibacterium acnes HL037PA3] gi|328905785|gb|EGG25561.1| chromosomal replication initiator protein DnaA [Propionibacterium sp. P08] Length = 500 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 34/157 (21%), Positives = 66/157 (42%), Gaps = 11/157 (7%) Query: 88 SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTA 144 +R+ F + +D +L+D DI L+ + FH N++H ++MT+ Sbjct: 248 NRTREFRRSYRDVDVLLVD--------DIQFLESKIQTQEEFFHTFNTLHNAQKQIVMTS 299 Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 P P L SR + + I PD + ++ + A +I ++ + +I R Sbjct: 300 DRPPKLLEALEPRLRSRFEWGLLTDIQPPDLETRIAILRRKVAAEKITVEPDVLEFIASR 359 Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + ++ E + ++ A + SLA VLK+ Sbjct: 360 IHTNIRELEGALIRVTAFASLNQQPVDTSLAEVVLKD 396 >gi|253699565|ref|YP_003020754.1| Chromosomal replication initiator DnaA [Geobacter sp. M21] gi|251774415|gb|ACT16996.1| Chromosomal replication initiator DnaA [Geobacter sp. M21] Length = 234 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 51/237 (21%), Positives = 102/237 (43%), Gaps = 29/237 (12%) Query: 27 QLFFSFPRCLGISRDDLLV----HSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 Q F FP ++ +V +A + A +L++ ++ + GP GSGK+ L Sbjct: 2 QFIFDFPVVPRFGFENFVVCGGNKTAYQFAKKLVEDSTE---NLLYIYGPEGSGKTHLLT 58 Query: 83 IWSDKSRSTRFS-NIAKSLDSILIDTRKP------------VLLEDIDLL-DFNDT--QL 126 S+ FS A SL + + P ++L+D+ LL + + +L Sbjct: 59 ALSNSIDGKYFSFRDAGSLYGASVGSEDPSRLAEHFQDAAALVLDDLHLLPNLQEVRVEL 118 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 + + N+ + + ++ P L SRL V ++ + DD+ ++ K+ Sbjct: 119 WELFNAFYSSGRKIAISGLMPPKELPHLDGHLTSRLLWGLVARMDVSDDESRRMILKKLA 178 Query: 187 ADRQIFIDKKLAAYIVQRMER---SLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 DRQ+ + + ++ R+ R SLV+A ++ ++ A+S ++ LA E + Sbjct: 179 EDRQMALPDDVIDEMLLRVRRDIPSLVYA---LENINRYAISTKRKVSLRLAKEAFR 232 >gi|254424343|ref|ZP_05038061.1| chromosomal replication initiator protein DnaA [Synechococcus sp. PCC 7335] gi|196191832|gb|EDX86796.1| chromosomal replication initiator protein DnaA [Synechococcus sp. PCC 7335] Length = 460 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 5/111 (4%) Query: 92 RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSW 151 RF + +D IL+D ++ I+ ++ + FH N++H+ +++ + P Sbjct: 212 RFREQYREVDVILVDD-----IQFIEGKEYTQEEFFHTFNTLHEAGKQIVLASDRPPNQI 266 Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 LCSR + I PD + ++ K Q+ I + + YI Sbjct: 267 PRLQDRLCSRFSMGLIADIQSPDFETRMAILQKKAEYEQVSIARDVTEYIA 317 >gi|189239513|ref|XP_975553.2| PREDICTED: similar to spastin CG5977-PA [Tribolium castaneum] Length = 690 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 10/77 (12%) Query: 36 LGISRDDLLVHSAIEQAVRLIDSWPSW----------PSRVVILVGPSGSGKSCLANIWS 85 L + +D++ A +QA++ + PS P+R ++L GP G+GK+ LA + Sbjct: 410 LQVQWEDIIGQDAAKQALQEMVILPSLRPELFTGLRTPARGLLLFGPPGNGKTLLARAVA 469 Query: 86 DKSRSTRFSNIAKSLDS 102 + R+T FS A SL S Sbjct: 470 TECRATFFSISAASLTS 486 >gi|225850462|ref|YP_002730696.1| chromosomal replication initiator protein DnaA [Persephonella marina EX-H1] gi|225646033|gb|ACO04219.1| chromosomal replication initiator protein DnaA [Persephonella marina EX-H1] Length = 437 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 11/138 (7%) Query: 115 DIDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 D+DLL +D Q L+HI N++H +++++ T P + L SR Sbjct: 196 DVDLLLIDDVQFLEGKERTQIELYHIFNALHLIGKQVILSSDTPPKNLKGLQERLKSRFV 255 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + VV++ PD +I K D I + + I + + ++ E + K+ + Sbjct: 256 SGLVVEVKAPDLQTKISIINKKSRDMNIKLPNDVILLIAKTINTNIRELEGSLSKLKAYS 315 Query: 224 LSRGMGITRSLAAEVLKE 241 G +T +A EVLK+ Sbjct: 316 EILGRPVTFDMAREVLKD 333 >gi|82749778|ref|YP_415519.1| chromosomal replication initiation protein [Staphylococcus aureus RF122] gi|123727433|sp|Q2YUP1|DNAA_STAAB RecName: Full=Chromosomal replication initiator protein DnaA gi|82655309|emb|CAI79689.1| chromosomal replicator initiator protein [Staphylococcus aureus RF122] Length = 453 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 29/123 (23%), Positives = 59/123 (47%), Gaps = 4/123 (3%) Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + F+ N +HQ + +++++ P L SR + +V I+ PD + ++ K Sbjct: 233 EFFYTFNELHQNNKQIVISSDRPPKEIAQLEDRLRSRFEWGLIVDITPPDYETRMAILQK 292 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG--ITRSLAAEVLKET 242 + ++ I + YI +++ ++ E + ++ LA S+ +G IT L AE LK+ Sbjct: 293 KIEEEKLDIPPEALNYIANQIQSNIRELEGALTRL--LAYSQLLGKPITTELTAEALKDI 350 Query: 243 QQC 245 Q Sbjct: 351 IQA 353 >gi|262089788|gb|ACY24881.1| DnaA family protein [uncultured organism] Length = 237 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 2/83 (2%) Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI-SLPDDDFLEKVIVK 184 +FH+ N + LL+ A P + L DL SRL+ ++ SL D+D + + ++ Sbjct: 122 IFHLYNRLRDAGKCLLVAAEHSPRELALSLEDLRSRLQWGLTYQVHSLTDEDKQQALQMR 181 Query: 185 MFADRQIFIDKKLAAYIVQRMER 207 A R + + +A YI+QR+ R Sbjct: 182 ARA-RGLELSDDVAQYIIQRLPR 203 >gi|126651063|ref|ZP_01723274.1| ABC transporter (ATP-binding protein) [Bacillus sp. B14905] gi|126592264|gb|EAZ86313.1| ABC transporter (ATP-binding protein) [Bacillus sp. B14905] Length = 253 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 11/71 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V ++GPSGSGK+ N S R T I+I+ R P +L D DL F ++L Sbjct: 37 VAVMGPSGSGKTTFLNSVSTIDRPTA--------GDIVINNRNPYVLNDEDLAKFRRSEL 88 Query: 127 ---FHIINSIH 134 F N +H Sbjct: 89 GFVFQDFNLVH 99 >gi|295406865|ref|ZP_06816669.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A8819] gi|294968330|gb|EFG44355.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A8819] Length = 453 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 29/123 (23%), Positives = 59/123 (47%), Gaps = 4/123 (3%) Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + F+ N +HQ + +++++ P L SR + +V I+ PD + ++ K Sbjct: 233 EFFYTFNELHQNNKQIVISSDRPPKEIAQLEDRLRSRFEWGLIVDITPPDYETRMAILQK 292 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG--ITRSLAAEVLKET 242 + ++ I + YI +++ ++ E + ++ LA S+ +G IT L AE LK+ Sbjct: 293 KIEEEKLDIPPEALNYIANQIQSNIRELEGALTRL--LAYSQLLGKPITTELTAEALKDI 350 Query: 243 QQC 245 Q Sbjct: 351 IQA 353 >gi|285018887|ref|YP_003376598.1| DNAa-homolog protein hda [Xanthomonas albilineans GPE PC73] gi|283474105|emb|CBA16606.1| putative dnaa-homolog protein hda [Xanthomonas albilineans] Length = 244 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 4/106 (3%) Query: 122 NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD-DDFLEK 180 ++ LF N +LL TA P +CLPDL SRL A +I LP +D Sbjct: 111 DEVALFDFHNRARSAGVTLLYTAHAMPDGLALCLPDLHSRL--AQCTRIVLPPLEDADRA 168 Query: 181 VIVKMFADRQIFIDKKLAA-YIVQRMERSLVFAEKLVDKMDNLALS 225 +++ A R+ + + A +++ + R L L++++D +L+ Sbjct: 169 AVLRERAQRRGLVLEDAAIDWLLTHVGRDLTGLIGLLERLDRESLA 214 >gi|15922991|ref|NP_370525.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus Mu50] gi|15925706|ref|NP_373239.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus N315] gi|21281730|ref|NP_644816.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus MW2] gi|49484913|ref|YP_042134.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57651109|ref|YP_184912.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus COL] gi|87161673|ref|YP_492723.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88193824|ref|YP_498609.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148266448|ref|YP_001245391.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus JH9] gi|150392481|ref|YP_001315156.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus JH1] gi|151220213|ref|YP_001331036.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156978332|ref|YP_001440591.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus Mu3] gi|161508267|ref|YP_001573926.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253730400|ref|ZP_04864565.1| replication initiation protein DnaA [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733838|ref|ZP_04868003.1| replication initiation protein DnaA [Staphylococcus aureus subsp. aureus TCH130] gi|254663935|ref|ZP_05143407.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257793539|ref|ZP_05642518.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A9781] gi|258411155|ref|ZP_05681434.1| replication initiation protein DnaA [Staphylococcus aureus A9763] gi|258420941|ref|ZP_05683875.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A9719] gi|258438580|ref|ZP_05689803.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus A9299] gi|258443964|ref|ZP_05692302.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus A8115] gi|258446220|ref|ZP_05694380.1| replication initiation protein dnaA [Staphylococcus aureus A6300] gi|258449121|ref|ZP_05697227.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus A6224] gi|258451366|ref|ZP_05699397.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus A5948] gi|258454401|ref|ZP_05702369.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus A5937] gi|262049433|ref|ZP_06022305.1| chromosomal replicator initiator protein [Staphylococcus aureus D30] gi|262051894|ref|ZP_06024109.1| chromosomal replicator initiator protein [Staphylococcus aureus 930918-3] gi|269201691|ref|YP_003280960.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus ED98] gi|282894280|ref|ZP_06302510.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A8117] gi|282902632|ref|ZP_06310525.1| DNA replication initiator protein, ATPase [Staphylococcus aureus subsp. aureus C160] gi|282918069|ref|ZP_06325819.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus D139] gi|282920720|ref|ZP_06328439.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A9765] gi|282921291|ref|ZP_06329009.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus C427] gi|282927751|ref|ZP_06335365.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A10102] gi|283767791|ref|ZP_06340706.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus subsp. aureus H19] gi|284023038|ref|ZP_06377436.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus 132] gi|294849829|ref|ZP_06790569.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A9754] gi|296275686|ref|ZP_06858193.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus MR1] gi|297209451|ref|ZP_06925849.1| DNA-directed DNA replication initiator protein [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245900|ref|ZP_06929762.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A8796] gi|300911475|ref|ZP_07128924.1| DNA-directed DNA replication initiator protein [Staphylococcus aureus subsp. aureus TCH70] gi|56748673|sp|Q6GD89|DNAA_STAAS RecName: Full=Chromosomal replication initiator protein DnaA gi|56749818|sp|P68865|DNAA_STAAM RecName: Full=Chromosomal replication initiator protein DnaA gi|56749819|sp|P68866|DNAA_STAAN RecName: Full=Chromosomal replication initiator protein DnaA gi|56749820|sp|P68867|DNAA_STAAU RecName: Full=Chromosomal replication initiator protein DnaA gi|56749821|sp|P68868|DNAA_STAAW RecName: Full=Chromosomal replication initiator protein DnaA gi|71151805|sp|Q5HJZ5|DNAA_STAAC RecName: Full=Chromosomal replication initiator protein DnaA gi|123291872|sp|Q2G2H5|DNAA_STAA8 RecName: Full=Chromosomal replication initiator protein DnaA gi|123736033|sp|Q2FKQ5|DNAA_STAA3 RecName: Full=Chromosomal replication initiator protein DnaA gi|166215334|sp|A7WWM4|DNAA_STAA1 RecName: Full=Chromosomal replication initiator protein DnaA gi|172048750|sp|A6QD41|DNAA_STAAE RecName: Full=Chromosomal replication initiator protein DnaA gi|189083281|sp|A6TXF1|DNAA_STAA2 RecName: Full=Chromosomal replication initiator protein DnaA gi|189083282|sp|A5INP2|DNAA_STAA9 RecName: Full=Chromosomal replication initiator protein DnaA gi|189083283|sp|A8YYS4|DNAA_STAAT RecName: Full=Chromosomal replication initiator protein DnaA gi|1694677|dbj|BAA13755.1| DnaA [Staphylococcus aureus] gi|13699918|dbj|BAB41217.1| chromosomal replication initiator protein [Staphylococcus aureus subsp. aureus N315] gi|14245768|dbj|BAB56163.1| chromosomal replication initiator protein [Staphylococcus aureus subsp. aureus Mu50] gi|21203165|dbj|BAB93866.1| chromosomal replication initiator protein [Staphylococcus aureus subsp. aureus MW2] gi|49243356|emb|CAG41773.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus MSSA476] gi|57285295|gb|AAW37389.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus COL] gi|58578564|dbj|BAD89355.1| DnaA [Staphylococcus aureus] gi|87127647|gb|ABD22161.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87201382|gb|ABD29192.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147739517|gb|ABQ47815.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus JH9] gi|149944933|gb|ABR50869.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus JH1] gi|150373013|dbj|BAF66273.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus str. Newman] gi|156720467|dbj|BAF76884.1| chromosomal replication initiator protein [Staphylococcus aureus subsp. aureus Mu3] gi|160367076|gb|ABX28047.1| replication initiation protein DnaA [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253725880|gb|EES94609.1| replication initiation protein DnaA [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728141|gb|EES96870.1| replication initiation protein DnaA [Staphylococcus aureus subsp. aureus TCH130] gi|257787511|gb|EEV25851.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A9781] gi|257840040|gb|EEV64505.1| replication initiation protein DnaA [Staphylococcus aureus A9763] gi|257843131|gb|EEV67546.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A9719] gi|257848139|gb|EEV72131.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus A9299] gi|257850848|gb|EEV74792.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus A8115] gi|257855046|gb|EEV77989.1| replication initiation protein dnaA [Staphylococcus aureus A6300] gi|257857554|gb|EEV80449.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus A6224] gi|257860896|gb|EEV83713.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus A5948] gi|257863495|gb|EEV86255.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus A5937] gi|259160221|gb|EEW45250.1| chromosomal replicator initiator protein [Staphylococcus aureus 930918-3] gi|259162430|gb|EEW47000.1| chromosomal replicator initiator protein [Staphylococcus aureus D30] gi|262073981|gb|ACY09954.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus ED98] gi|282315706|gb|EFB46090.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus C427] gi|282318354|gb|EFB48714.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus D139] gi|282590511|gb|EFB95589.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A10102] gi|282594128|gb|EFB99116.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A9765] gi|282597091|gb|EFC02050.1| DNA replication initiator protein, ATPase [Staphylococcus aureus subsp. aureus C160] gi|282763325|gb|EFC03455.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A8117] gi|283461670|gb|EFC08754.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus subsp. aureus H19] gi|285815728|gb|ADC36215.1| Chromosomal replication initiator protein DnaA [Staphylococcus aureus 04-02981] gi|294823377|gb|EFG39806.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A9754] gi|296885912|gb|EFH24847.1| DNA-directed DNA replication initiator protein [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297177265|gb|EFH36518.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A8796] gi|298693323|gb|ADI96545.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus ED133] gi|300887654|gb|EFK82850.1| DNA-directed DNA replication initiator protein [Staphylococcus aureus subsp. aureus TCH70] gi|302331773|gb|ADL21966.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus JKD6159] gi|312828564|emb|CBX33406.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129544|gb|EFT85536.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus CGS03] gi|315197919|gb|EFU28252.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus CGS01] gi|320141418|gb|EFW33261.1| replication initiator protein DnaA [Staphylococcus aureus subsp. aureus MRSA131] gi|320144401|gb|EFW36166.1| replication initiator protein DnaA [Staphylococcus aureus subsp. aureus MRSA177] gi|323439698|gb|EGA97416.1| chromosomal replication initiation protein [Staphylococcus aureus O11] gi|323443271|gb|EGB00888.1| chromosomal replication initiation protein [Staphylococcus aureus O46] gi|329725589|gb|EGG62068.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus 21172] gi|329731888|gb|EGG68248.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus 21189] gi|329732572|gb|EGG68922.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus 21193] Length = 453 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 29/123 (23%), Positives = 59/123 (47%), Gaps = 4/123 (3%) Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + F+ N +HQ + +++++ P L SR + +V I+ PD + ++ K Sbjct: 233 EFFYTFNELHQNNKQIVISSDRPPKEIAQLEDRLRSRFEWGLIVDITPPDYETRMAILQK 292 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG--ITRSLAAEVLKET 242 + ++ I + YI +++ ++ E + ++ LA S+ +G IT L AE LK+ Sbjct: 293 KIEEEKLDIPPEALNYIANQIQSNIRELEGALTRL--LAYSQLLGKPITTELTAEALKDI 350 Query: 243 QQC 245 Q Sbjct: 351 IQA 353 >gi|297537214|ref|YP_003672983.1| IstB domain-containing protein ATP-binding protein [Methylotenera sp. 301] gi|297538441|ref|YP_003674210.1| IstB domain-containing protein ATP-binding protein [Methylotenera sp. 301] gi|297539655|ref|YP_003675424.1| IstB domain-containing protein ATP-binding protein [Methylotenera sp. 301] gi|297539802|ref|YP_003675571.1| IstB domain-containing protein ATP-binding protein [Methylotenera sp. 301] gi|297256561|gb|ADI28406.1| IstB domain protein ATP-binding protein [Methylotenera sp. 301] gi|297257788|gb|ADI29633.1| IstB domain protein ATP-binding protein [Methylotenera sp. 301] gi|297259002|gb|ADI30847.1| IstB domain protein ATP-binding protein [Methylotenera sp. 301] gi|297259149|gb|ADI30994.1| IstB domain protein ATP-binding protein [Methylotenera sp. 301] Length = 241 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 21/113 (18%) Query: 65 RVVILVGPSGSGKSCLANI----WSDKSRSTRFSNIAKSLDSILIDTRKP---------- 110 R +I VG G+GK+ LA+ + K RF N+ ++ + +D + Sbjct: 99 RNIIFVGGPGTGKTHLASAIGVDAATKGARVRFYNVLDLVNQLELDKDQQKHKLAQQLAK 158 Query: 111 ---VLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 V+L+++ L F+ LFH+I+ +H+ S ++ T F WG D Sbjct: 159 YDLVILDELGYLPFSQKGGALLFHLISQLHEQTSIIITTNLAFS-EWGKLFAD 210 >gi|103485499|ref|YP_615060.1| chromosomal replication initiation protein [Sphingopyxis alaskensis RB2256] gi|122984662|sp|Q1GN68|DNAA_SPHAL RecName: Full=Chromosomal replication initiator protein DnaA gi|98975576|gb|ABF51727.1| chromosomal replication initiator protein DnaA [Sphingopyxis alaskensis RB2256] Length = 453 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 3/123 (2%) Query: 122 NDTQ--LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179 N TQ L H I+ + L++TA P L SRL V I P+DD E Sbjct: 229 NSTQEELLHTIDDLMTAGKRLVVTADRPPAMLDGVEARLLSRLSGGLVADIEAPEDDLRE 288 Query: 180 KVIVKMFADR-QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238 ++I + A + + + A++V+ R++ E ++K+ A G I LA + Sbjct: 289 RIIRQRLAAMPMVEVPDDVIAWLVKHFTRNIRELEGALNKLLAYAALTGARIDLMLAEDR 348 Query: 239 LKE 241 L E Sbjct: 349 LAE 351 >gi|49482254|ref|YP_039478.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus MRSA252] gi|221141516|ref|ZP_03566009.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus str. JKD6009] gi|257424197|ref|ZP_05600626.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus subsp. aureus 55/2053] gi|257426874|ref|ZP_05603276.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus subsp. aureus 65-1322] gi|257429510|ref|ZP_05605897.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus subsp. aureus 68-397] gi|257432157|ref|ZP_05608520.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus subsp. aureus E1410] gi|257435118|ref|ZP_05611169.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus M876] gi|258423237|ref|ZP_05686129.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A9635] gi|282907048|ref|ZP_06314896.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus subsp. aureus Btn1260] gi|282910027|ref|ZP_06317835.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus WW2703/97] gi|282912275|ref|ZP_06320071.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus WBG10049] gi|282912915|ref|ZP_06320707.1| DNA replication initiator protein, ATPase [Staphylococcus aureus subsp. aureus M899] gi|282922543|ref|ZP_06330233.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus C101] gi|283959485|ref|ZP_06376926.1| DNA replication initiator protein, ATPase [Staphylococcus aureus subsp. aureus A017934/97] gi|293497968|ref|ZP_06665822.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus 58-424] gi|293511558|ref|ZP_06670252.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus M809] gi|293550167|ref|ZP_06672839.1| DNA replication initiator protein, ATPase [Staphylococcus aureus subsp. aureus M1015] gi|295429298|ref|ZP_06821920.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus EMRSA16] gi|297589200|ref|ZP_06947841.1| DNA-directed DNA replication initiator protein [Staphylococcus aureus subsp. aureus MN8] gi|304379949|ref|ZP_07362678.1| DNA-directed DNA replication initiator protein [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|56748687|sp|Q6GKU4|DNAA_STAAR RecName: Full=Chromosomal replication initiator protein DnaA gi|49240383|emb|CAG39029.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus MRSA252] gi|257273215|gb|EEV05317.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus subsp. aureus 55/2053] gi|257276505|gb|EEV07956.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus subsp. aureus 65-1322] gi|257279991|gb|EEV10578.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus subsp. aureus 68-397] gi|257283036|gb|EEV13168.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus subsp. aureus E1410] gi|257285714|gb|EEV15830.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus M876] gi|257846566|gb|EEV70588.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A9635] gi|269939527|emb|CBA12169.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus TW20] gi|282314764|gb|EFB45150.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus C101] gi|282323015|gb|EFB53334.1| DNA replication initiator protein, ATPase [Staphylococcus aureus subsp. aureus M899] gi|282323971|gb|EFB54287.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus WBG10049] gi|282326093|gb|EFB56398.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus WW2703/97] gi|282329947|gb|EFB59468.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus subsp. aureus Btn1260] gi|283789077|gb|EFC27904.1| DNA replication initiator protein, ATPase [Staphylococcus aureus subsp. aureus A017934/97] gi|290919214|gb|EFD96290.1| DNA replication initiator protein, ATPase [Staphylococcus aureus subsp. aureus M1015] gi|291096899|gb|EFE27157.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus 58-424] gi|291465516|gb|EFF08048.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus M809] gi|295127057|gb|EFG56701.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus EMRSA16] gi|297577711|gb|EFH96424.1| DNA-directed DNA replication initiator protein [Staphylococcus aureus subsp. aureus MN8] gi|302749912|gb|ADL64089.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304341529|gb|EFM07439.1| DNA-directed DNA replication initiator protein [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312436858|gb|ADQ75929.1| DNA-directed DNA replication initiator protein [Staphylococcus aureus subsp. aureus TCH60] gi|315195227|gb|EFU25615.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus CGS00] gi|329312724|gb|AEB87137.1| Chromosomal replication initiator protein dnaA [Staphylococcus aureus subsp. aureus T0131] Length = 453 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 29/123 (23%), Positives = 59/123 (47%), Gaps = 4/123 (3%) Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + F+ N +HQ + +++++ P L SR + +V I+ PD + ++ K Sbjct: 233 EFFYTFNELHQNNKQIVISSDRPPKEIAQLEDRLRSRFEWGLIVDITPPDYETRMAILQK 292 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG--ITRSLAAEVLKET 242 + ++ I + YI +++ ++ E + ++ LA S+ +G IT L AE LK+ Sbjct: 293 KIEEEKLDIPPEALNYIANQIQSNIRELEGALTRL--LAYSQLLGKPITTELTAEALKDI 350 Query: 243 QQC 245 Q Sbjct: 351 IQA 353 >gi|145294043|ref|YP_001136864.1| chromosomal replication initiation protein [Corynebacterium glutamicum R] gi|166201881|sp|A4Q9R9|DNAA_CORGB RecName: Full=Chromosomal replication initiator protein DnaA gi|140843963|dbj|BAF52962.1| hypothetical protein [Corynebacterium glutamicum R] Length = 524 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 26/124 (20%), Positives = 52/124 (41%), Gaps = 11/124 (8%) Query: 89 RSTRFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTAR 145 R F ++LD +++D DI L + + FH N++HQ D +++++ Sbjct: 270 RQETFKRRYRNLDILMVD--------DIQFLAGKEGTQEEFFHTFNALHQADKQIILSSD 321 Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 P L +R + + I PD + +++K +D+++ I R Sbjct: 322 RPPKQLTTLEDRLRTRFEGGLITDIQPPDLETRIAILMKKAQTDGTHVDREVLELIASRF 381 Query: 206 ERSL 209 E S+ Sbjct: 382 ESSI 385 >gi|306834799|ref|ZP_07467863.1| exopolyphosphatase [Corynebacterium accolens ATCC 49726] gi|304569327|gb|EFM44828.1| exopolyphosphatase [Corynebacterium accolens ATCC 49726] Length = 566 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 26/124 (20%), Positives = 54/124 (43%), Gaps = 11/124 (8%) Query: 89 RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTAR 145 R F ++LD +++D DI L+ ++ + FH N++HQ + +++++ Sbjct: 312 RQESFKRRYRNLDILMVD--------DIQFLEGKESTQEEFFHTFNALHQANKQIILSSD 363 Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 P L +R + + I PD + +++K A +D+ + I R Sbjct: 364 RPPKQLTTLEDRLRTRFEGGLITDIQPPDLETRIAILMKKAAADGTEVDRSVLELIASRF 423 Query: 206 ERSL 209 E S+ Sbjct: 424 ESSI 427 >gi|289667649|ref|ZP_06488724.1| chromosomal replication initiation protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 442 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 43/198 (21%), Positives = 77/198 (38%), Gaps = 23/198 (11%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTR-------------FSNIAKSLDSILIDTRK---- 109 ++L G +G GK+ L + R FS + ++L +D K Sbjct: 143 LLLYGSTGLGKTHLMFAAGNALRQANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQ 202 Query: 110 ---PVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 +L++DI D + FH N++ +++T +P P L SRL Sbjct: 203 QIDALLIDDIQFFAGKDRTQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLA 262 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 V I PD + +++ +R I +A I ++M ++ E ++ + A Sbjct: 263 WGLSVAIDPPDFETRAAIVLAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARA 322 Query: 224 LSRGMGITRSLAAEVLKE 241 G IT A E L++ Sbjct: 323 NFTGRSITVEFAQETLRD 340 >gi|289662284|ref|ZP_06483865.1| chromosomal replication initiation protein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 442 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 43/198 (21%), Positives = 77/198 (38%), Gaps = 23/198 (11%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTR-------------FSNIAKSLDSILIDTRK---- 109 ++L G +G GK+ L + R FS + ++L +D K Sbjct: 143 LLLYGSTGLGKTHLMFAAGNALRQANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQ 202 Query: 110 ---PVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 +L++DI D + FH N++ +++T +P P L SRL Sbjct: 203 QIDALLIDDIQFFAGKDRTQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLA 262 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 V I PD + +++ +R I +A I ++M ++ E ++ + A Sbjct: 263 WGLSVAIDPPDFETRAAIVLAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARA 322 Query: 224 LSRGMGITRSLAAEVLKE 241 G IT A E L++ Sbjct: 323 NFTGRSITVEFAQETLRD 340 >gi|283469230|emb|CAQ48441.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus ST398] Length = 453 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 29/123 (23%), Positives = 59/123 (47%), Gaps = 4/123 (3%) Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + F+ N +HQ + +++++ P L SR + +V I+ PD + ++ K Sbjct: 233 EFFYTFNELHQNNKQIVISSDRPPKEIAQLEDRLRSRFEWGLIVDITPPDYETRMAILQK 292 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG--ITRSLAAEVLKET 242 + ++ I + YI +++ ++ E + ++ LA S+ +G IT L AE LK+ Sbjct: 293 KIEEEKLDIPPEALNYIANQIQSNIRELEGALTRL--LAYSQLLGKPITTELTAEALKDI 350 Query: 243 QQC 245 Q Sbjct: 351 IQA 353 >gi|21326649|gb|AAL30089.1| chromosomal replication initiator protein DnaA [Xanthomonas campestris pv. campestris] Length = 442 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 43/198 (21%), Positives = 77/198 (38%), Gaps = 23/198 (11%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTR-------------FSNIAKSLDSILIDTRK---- 109 ++L G +G GK+ L + R FS + ++L +D K Sbjct: 143 LLLYGSTGLGKTHLMFAAGNALRQANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQ 202 Query: 110 ---PVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 +L++DI D + FH N++ +++T +P P L SRL Sbjct: 203 QIDALLIDDIQFFAGKDRTQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLA 262 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 V I PD + +++ +R I +A I ++M ++ E ++ + A Sbjct: 263 WGLSVAIDPPDFETRAAIVLAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARA 322 Query: 224 LSRGMGITRSLAAEVLKE 241 G IT A E L++ Sbjct: 323 NFTGRSITVEFAQETLRD 340 >gi|21229479|ref|NP_635396.1| chromosomal replication initiation protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|188989397|ref|YP_001901407.1| chromosomal replication initiation protein [Xanthomonas campestris pv. campestris str. B100] gi|38257667|sp|Q8PEH5|DNAA_XANCP RecName: Full=Chromosomal replication initiator protein DnaA gi|226735863|sp|B0RLI8|DNAA_XANCB RecName: Full=Chromosomal replication initiator protein DnaA gi|21110939|gb|AAM39320.1| chromosomal replication initiator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|167731157|emb|CAP49329.1| chromosomal replication initiator protein [Xanthomonas campestris pv. campestris] Length = 442 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 43/198 (21%), Positives = 77/198 (38%), Gaps = 23/198 (11%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTR-------------FSNIAKSLDSILIDTRK---- 109 ++L G +G GK+ L + R FS + ++L +D K Sbjct: 143 LLLYGSTGLGKTHLMFAAGNALRQANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQ 202 Query: 110 ---PVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 +L++DI D + FH N++ +++T +P P L SRL Sbjct: 203 QIDALLIDDIQFFAGKDRTQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLA 262 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 V I PD + +++ +R I +A I ++M ++ E ++ + A Sbjct: 263 WGLSVAIDPPDFETRAAIVLAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARA 322 Query: 224 LSRGMGITRSLAAEVLKE 241 G IT A E L++ Sbjct: 323 NFTGRSITVEFAQETLRD 340 >gi|19551251|ref|NP_599253.1| chromosomal replication initiation protein [Corynebacterium glutamicum ATCC 13032] gi|62388893|ref|YP_224295.1| chromosomal replication initiation protein [Corynebacterium glutamicum ATCC 13032] gi|38257663|sp|Q8NUD8|DNAA_CORGL RecName: Full=Chromosomal replication initiator protein DnaA gi|21322765|dbj|BAB97394.1| ATPase involved in DNA replication initiation [Corynebacterium glutamicum ATCC 13032] gi|41324226|emb|CAF18566.1| CHROMOSOMAL REPLICATION INITIATOR PROTEIN [Corynebacterium glutamicum ATCC 13032] Length = 524 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 26/124 (20%), Positives = 52/124 (41%), Gaps = 11/124 (8%) Query: 89 RSTRFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTAR 145 R F ++LD +++D DI L + + FH N++HQ D +++++ Sbjct: 270 RQETFKRRYRNLDILMVD--------DIQFLAGKEGTQEEFFHTFNALHQADKQIILSSD 321 Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 P L +R + + I PD + +++K +D+++ I R Sbjct: 322 RPPKQLTTLEDRLRTRFEGGLITDIQPPDLETRIAILMKKAQTDGTHVDREVLELIASRF 381 Query: 206 ERSL 209 E S+ Sbjct: 382 ESSI 385 >gi|15836606|ref|NP_297294.1| chromosomal replication initiation protein [Xylella fastidiosa 9a5c] gi|14194685|sp|Q9PHE3|DNAA_XYLFA RecName: Full=Chromosomal replication initiator protein DnaA gi|9104761|gb|AAF82814.1|AE003855_1 chromosomal replication initiator [Xylella fastidiosa 9a5c] Length = 439 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 37/167 (22%), Positives = 67/167 (40%), Gaps = 12/167 (7%) Query: 78 SCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIH 134 S + DKS +F +D++LID DI D + FH N++ Sbjct: 180 SAMIRALQDKSMD-QFKRQFHQIDALLID--------DIQFFAGKDRTQEEFFHTFNALF 230 Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194 +++T +P P L SRL V I PD + +++ +R I Sbjct: 231 DGKQQIILTCDRYPREVNGLEPRLKSRLAWGLSVAIDPPDFETRAAIVLAKARERGATIP 290 Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++A I ++M ++ E ++ + A G +T + E L++ Sbjct: 291 DEVAFLIAKKMHSNVRDLEGALNTLVARANFTGRAVTIEFSQETLRD 337 >gi|325926219|ref|ZP_08187577.1| chromosomal replication initiator protein DnaA [Xanthomonas perforans 91-118] gi|325543401|gb|EGD14826.1| chromosomal replication initiator protein DnaA [Xanthomonas perforans 91-118] Length = 442 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 43/198 (21%), Positives = 77/198 (38%), Gaps = 23/198 (11%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTR-------------FSNIAKSLDSILIDTRK---- 109 ++L G +G GK+ L + R FS + ++L +D K Sbjct: 143 LLLYGSTGLGKTHLMFAAGNALRQANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQ 202 Query: 110 ---PVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 +L++DI D + FH N++ +++T +P P L SRL Sbjct: 203 QIDALLIDDIQFFAGKDRTQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLA 262 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 V I PD + +++ +R I +A I ++M ++ E ++ + A Sbjct: 263 WGLSVAIDPPDFETRAAIVLAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARA 322 Query: 224 LSRGMGITRSLAAEVLKE 241 G IT A E L++ Sbjct: 323 NFTGRSITVEFAQETLRD 340 >gi|299143462|ref|ZP_07036542.1| DNA replication initiator protein, ATPase [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517947|gb|EFI41686.1| DNA replication initiator protein, ATPase [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 447 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 43/186 (23%), Positives = 79/186 (42%), Gaps = 27/186 (14%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL--- 119 P++ ++ V + +I ++K+ F N + +D +LID DI + Sbjct: 173 PNKKILYVTSEQFTNELINSIQTNKNE--HFRNKYRKVDLLLID--------DIQFIADK 222 Query: 120 DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179 D + FH N +H+ + +++T+ P L SR VV I PD LE Sbjct: 223 DRTQEEFFHTFNELHESNKQIVLTSDKPPKDIKSLEERLISRFAWGLVVDIGTPD---LE 279 Query: 180 K--VIVKMFADRQIF-IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236 I++ AD + F + + +I Q ++ ++ E ALSR M ++ Sbjct: 280 TRIAILRSKADSEGFNVPDNIINFIAQNVKSNIRELEG--------ALSRIMAYSKLTVG 331 Query: 237 EVLKET 242 E+ ++T Sbjct: 332 EMTEQT 337 >gi|319775073|ref|YP_004137561.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Haemophilus influenzae F3047] gi|317449664|emb|CBY85870.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Haemophilus influenzae F3047] Length = 454 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 30/153 (19%), Positives = 67/153 (43%), Gaps = 11/153 (7%) Query: 92 RFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFP 148 +F +SLD++L+D DI + + FHI N++ + +++T+ +P Sbjct: 209 QFKKFYRSLDALLVD--------DIQFFAEKEKTQEEFFHIFNNLFETGRQIILTSDRYP 260 Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 L SR I PD + +++K + + + +++A +I QR+ + Sbjct: 261 KEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNMNLPEEVAFFIAQRLRTN 320 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + E ++++ + +G I + LK+ Sbjct: 321 VRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353 >gi|213404020|ref|XP_002172782.1| AAA family ATPase [Schizosaccharomyces japonicus yFS275] gi|212000829|gb|EEB06489.1| AAA family ATPase [Schizosaccharomyces japonicus yFS275] Length = 718 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 19/43 (44%), Positives = 28/43 (65%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI 105 P+R ++L GP G+GK+ LA + +S+ST FS A SL S + Sbjct: 470 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTSKFL 512 >gi|329123016|ref|ZP_08251587.1| DNA-directed DNA replication initiator protein [Haemophilus aegyptius ATCC 11116] gi|327471947|gb|EGF17387.1| DNA-directed DNA replication initiator protein [Haemophilus aegyptius ATCC 11116] Length = 454 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 30/153 (19%), Positives = 67/153 (43%), Gaps = 11/153 (7%) Query: 92 RFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFP 148 +F +SLD++L+D DI + + FHI N++ + +++T+ +P Sbjct: 209 QFKKFYRSLDALLVD--------DIQFFAEKEKTQEEFFHIFNNLFETGRQIILTSDRYP 260 Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 L SR I PD + +++K + + + +++A +I QR+ + Sbjct: 261 KEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNMNLPEEVAFFIAQRLRTN 320 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + E ++++ + +G I + LK+ Sbjct: 321 VRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353 >gi|309751341|gb|ADO81325.1| Chromosomal replication initiator protein [Haemophilus influenzae R2866] Length = 454 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 30/153 (19%), Positives = 67/153 (43%), Gaps = 11/153 (7%) Query: 92 RFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFP 148 +F +SLD++L+D DI + + FHI N++ + +++T+ +P Sbjct: 209 QFKKFYRSLDALLVD--------DIQFFAEKEKTQEEFFHIFNNLFETGRQIILTSDRYP 260 Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 L SR I PD + +++K + + + +++A +I QR+ + Sbjct: 261 KEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNLNLPEEVAFFIAQRLRTN 320 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + E ++++ + +G I + LK+ Sbjct: 321 VRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353 >gi|310795052|gb|EFQ30513.1| ATPase [Glomerella graminicola M1.001] Length = 809 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/40 (50%), Positives = 27/40 (67%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P+R ++L GP G+GK+ LA + +SRST FS A SL S Sbjct: 553 PARGMLLFGPPGTGKTMLARAVATESRSTFFSISASSLTS 592 >gi|194334994|ref|YP_002016854.1| type I secretion system ATPase [Prosthecochloris aestuarii DSM 271] gi|194312812|gb|ACF47207.1| type I secretion system ATPase [Prosthecochloris aestuarii DSM 271] Length = 576 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 5/63 (7%) Query: 63 PSRVVILVGPSGSGKSCLA----NIWSDKSRSTRFSNI-AKSLDSILIDTRKPVLLEDID 117 P +V L+GPSGSGKS A IW + + + +I S D +I L +D++ Sbjct: 361 PGELVALIGPSGSGKSTFARSLLGIWPETTGTVLIDSIPVSSWDRSMIGPMSGYLPQDVE 420 Query: 118 LLD 120 L D Sbjct: 421 LFD 423 >gi|71275534|ref|ZP_00651820.1| chromosomal replication initiator protein, DnaA [Xylella fastidiosa Dixon] gi|71900181|ref|ZP_00682321.1| chromosomal replication initiator protein, DnaA [Xylella fastidiosa Ann-1] gi|170729252|ref|YP_001774685.1| chromosomal replication initiation protein [Xylella fastidiosa M12] gi|71163834|gb|EAO13550.1| chromosomal replication initiator protein, DnaA [Xylella fastidiosa Dixon] gi|71730070|gb|EAO32161.1| chromosomal replication initiator protein, DnaA [Xylella fastidiosa Ann-1] gi|167964045|gb|ACA11055.1| chromosomal replication initiator [Xylella fastidiosa M12] Length = 443 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 37/167 (22%), Positives = 67/167 (40%), Gaps = 12/167 (7%) Query: 78 SCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIH 134 S + DKS +F +D++LID DI D + FH N++ Sbjct: 184 SAMIRALQDKSMD-QFKRQFHQIDALLID--------DIQFFAGKDRTQEEFFHTFNALF 234 Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194 +++T +P P L SRL V I PD + +++ +R I Sbjct: 235 DGKQQIILTCDRYPREVNGLEPRLKSRLAWGLSVAIDPPDFETRAAIVLAKARERGATIP 294 Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++A I ++M ++ E ++ + A G +T + E L++ Sbjct: 295 DEVAFLIAKKMHSNVRDLEGALNTLVARANFTGRAVTIEFSQETLRD 341 >gi|294627438|ref|ZP_06706022.1| chromosomal replication initiation protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294665122|ref|ZP_06730425.1| chromosomal replication initiation protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292598259|gb|EFF42412.1| chromosomal replication initiation protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292605123|gb|EFF48471.1| chromosomal replication initiation protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 442 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 43/198 (21%), Positives = 77/198 (38%), Gaps = 23/198 (11%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTR-------------FSNIAKSLDSILIDTRK---- 109 ++L G +G GK+ L + R FS + ++L +D K Sbjct: 143 LLLYGSTGLGKTHLMFAAGNALRQANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQ 202 Query: 110 ---PVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 +L++DI D + FH N++ +++T +P P L SRL Sbjct: 203 QIDALLIDDIQFFAGKDRTQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLA 262 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 V I PD + +++ +R I +A I ++M ++ E ++ + A Sbjct: 263 WGLSVAIDPPDFETRAAIVLAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARA 322 Query: 224 LSRGMGITRSLAAEVLKE 241 G IT A E L++ Sbjct: 323 NFTGRSITVEFAQETLRD 340 >gi|270010589|gb|EFA07037.1| hypothetical protein TcasGA2_TC010011 [Tribolium castaneum] Length = 625 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 10/72 (13%) Query: 41 DDLLVHSAIEQAVRLIDSWPSW----------PSRVVILVGPSGSGKSCLANIWSDKSRS 90 +D++ A +QA++ + PS P+R ++L GP G+GK+ LA + + R+ Sbjct: 350 EDIIGQDAAKQALQEMVILPSLRPELFTGLRTPARGLLLFGPPGNGKTLLARAVATECRA 409 Query: 91 TRFSNIAKSLDS 102 T FS A SL S Sbjct: 410 TFFSISAASLTS 421 >gi|68249578|ref|YP_248690.1| chromosomal replication initiation protein [Haemophilus influenzae 86-028NP] gi|68057777|gb|AAX88030.1| chromosomal replication initiator protein DnaA [Haemophilus influenzae 86-028NP] Length = 454 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 30/153 (19%), Positives = 67/153 (43%), Gaps = 11/153 (7%) Query: 92 RFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFP 148 +F +SLD++L+D DI + + FHI N++ + +++T+ +P Sbjct: 209 QFKKFYRSLDALLVD--------DIQFFAEKEKTQEEFFHIFNNLFETGRQIILTSDRYP 260 Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 L SR I PD + +++K + + + +++A +I QR+ + Sbjct: 261 KEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNMNLPEEVAFFIAQRLRTN 320 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + E ++++ + +G I + LK+ Sbjct: 321 VRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353 >gi|145628065|ref|ZP_01783866.1| chromosomal replication initiation protein [Haemophilus influenzae 22.1-21] gi|144979840|gb|EDJ89499.1| chromosomal replication initiation protein [Haemophilus influenzae 22.1-21] gi|301169719|emb|CBW29320.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Haemophilus influenzae 10810] Length = 454 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 30/153 (19%), Positives = 67/153 (43%), Gaps = 11/153 (7%) Query: 92 RFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFP 148 +F +SLD++L+D DI + + FHI N++ + +++T+ +P Sbjct: 209 QFKKFYRSLDALLVD--------DIQFFAEKEKTQEEFFHIFNNLFETGRQIILTSDRYP 260 Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 L SR I PD + +++K + + + +++A +I QR+ + Sbjct: 261 KEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNMNLPEEVAFFIAQRLRTN 320 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + E ++++ + +G I + LK+ Sbjct: 321 VRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353 >gi|302670287|ref|YP_003830247.1| phosphoribulokinase/uridine kinase family protein [Butyrivibrio proteoclasticus B316] gi|302394760|gb|ADL33665.1| phosphoribulokinase/uridine kinase family protein [Butyrivibrio proteoclasticus B316] Length = 550 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 5/85 (5%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV----VILVGPSGSGKSCLANIWSDKSRS 90 C G + +LV A++++ R+ D R+ V++ GPS SGK+ AN S + R+ Sbjct: 253 CEGRINEMILVQEALQES-RIADIARKIFKRIDVKFVMIAGPSSSGKTSFANRLSIQLRT 311 Query: 91 TRFSNIAKSLDSILIDTRKPVLLED 115 + SLD+ +D K L ED Sbjct: 312 YGLTPHPISLDNYFVDREKTPLNED 336 >gi|83644734|ref|YP_433169.1| DnaA family protein [Hahella chejuensis KCTC 2396] gi|83632777|gb|ABC28744.1| DnaA family protein [Hahella chejuensis KCTC 2396] Length = 232 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 15/140 (10%) Query: 113 LEDIDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161 LE D+L F+D LFH+ N + L+T+ P LPDL +R Sbjct: 93 LESFDVLCFDDIDAIAGQPEWEEALFHLFNRCRERGCKWLITSAEAPSQTPFLLPDLKTR 152 Query: 162 LKAATVVKISLPDDDFLEKVIVK--MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 L V+ LP+ D ++++ V A+ + ++ YI++R R L +++++ Sbjct: 153 LAWGECVR--LPELDEVQRINVLDIKAANIGFRLSDEVKQYIMRRAPRDLSSLSLILERL 210 Query: 220 DNLALSRGMGITRSLAAEVL 239 D +L IT V+ Sbjct: 211 DKASLVEKRPITVPFVKSVM 230 >gi|229843947|ref|ZP_04464088.1| chromosomal replication initiation protein [Haemophilus influenzae 6P18H1] gi|229812941|gb|EEP48629.1| chromosomal replication initiation protein [Haemophilus influenzae 6P18H1] Length = 454 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 30/153 (19%), Positives = 67/153 (43%), Gaps = 11/153 (7%) Query: 92 RFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFP 148 +F +SLD++L+D DI + + FHI N++ + +++T+ +P Sbjct: 209 QFKKFYRSLDALLVD--------DIQFFAEKEKTQEEFFHIFNNLFETGRQIILTSDRYP 260 Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 L SR I PD + +++K + + + +++A +I QR+ + Sbjct: 261 KEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNLNLPEEVAFFIAQRLRTN 320 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + E ++++ + +G I + LK+ Sbjct: 321 VRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353 >gi|21240775|ref|NP_640357.1| chromosomal replication initiation protein [Xanthomonas axonopodis pv. citri str. 306] gi|38257669|sp|Q8PRG2|DNAA_XANAC RecName: Full=Chromosomal replication initiator protein DnaA gi|21106039|gb|AAM34893.1| chromosomal replication initiator [Xanthomonas axonopodis pv. citri str. 306] Length = 442 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 43/198 (21%), Positives = 77/198 (38%), Gaps = 23/198 (11%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTR-------------FSNIAKSLDSILIDTRK---- 109 ++L G +G GK+ L + R FS + ++L +D K Sbjct: 143 LLLYGSTGLGKTHLMFAAGNALRQANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQ 202 Query: 110 ---PVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 +L++DI D + FH N++ +++T +P P L SRL Sbjct: 203 QIDALLIDDIQFFAGKDRTQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLA 262 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 V I PD + +++ +R I +A I ++M ++ E ++ + A Sbjct: 263 WGLSVAIDPPDFETRAAIVLAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARA 322 Query: 224 LSRGMGITRSLAAEVLKE 241 G IT A E L++ Sbjct: 323 NFTGRSITVEFAQETLRD 340 >gi|167580317|ref|ZP_02373191.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia thailandensis TXDOH] gi|167618440|ref|ZP_02387071.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia thailandensis Bt4] Length = 574 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 5/71 (7%) Query: 58 SWPSWPSRVVILVGPSGSGKSCLANI----WSDKSRSTRFSNIAKSLDSILIDTRKPVLL 113 S+ P +V L GPSGSGK+ L N+ + S + R +A S L D R + + Sbjct: 354 SFTVAPGEMVALAGPSGSGKTTLVNLLPRFFDPSSGTVRVDGVALPEYS-LHDLRNQIAM 412 Query: 114 EDIDLLDFNDT 124 D++ FNDT Sbjct: 413 VSQDVVLFNDT 423 >gi|72381841|ref|YP_291196.1| chromosomal replication initiation protein [Prochlorococcus marinus str. NATL2A] gi|72001691|gb|AAZ57493.1| chromosomal replication initiator protein DnaA [Prochlorococcus marinus str. NATL2A] Length = 466 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 31/152 (20%), Positives = 61/152 (40%), Gaps = 5/152 (3%) Query: 93 FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWG 152 F N + D IL+D ++ I+ ++ + FH N++H+ +++T+ P Sbjct: 217 FRNRYREADLILVDD-----IQFIEGKEYTQEEFFHTFNALHEAGRQIVLTSDRPPSQIP 271 Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 L SR + I PD + ++ K ++ + + L +I R ++ Sbjct: 272 RLQERLISRFSMGLIADIQAPDLETRMAILQKKAEHERMRLPRDLIQFIAGRFTSNIREL 331 Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 E + A G+ +T A +L T Q Sbjct: 332 EGAFTRAVAFASITGLPMTVESVAPMLDPTGQ 363 >gi|255691401|ref|ZP_05415076.1| ATPase [Bacteroides finegoldii DSM 17565] gi|260623047|gb|EEX45918.1| ATPase [Bacteroides finegoldii DSM 17565] Length = 473 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 40/173 (23%), Positives = 70/173 (40%), Gaps = 23/173 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS----TRFSNIAKSL------DSILIDTRKPVL--LE 114 + L G SG GK+ LAN K + R ++ L DS+ +T + + Sbjct: 169 LFLYGASGVGKTHLANAIGTKIKEIYPEKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQ 228 Query: 115 DIDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 ID+L +D Q FHI N +HQ L++T+ PV L +R K Sbjct: 229 TIDVLIIDDIQEFAGVTKTQNNFFHIFNHLHQNGKQLILTSDRAPVLLQGIEERLLTRFK 288 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216 V ++ P + + ++ + +++ YI + + S+ E +V Sbjct: 289 WGMVAELEKPTVELRKNILRNKIHRDGLQFPEEVIDYIAENVNESVRDLEGIV 341 >gi|145638185|ref|ZP_01793795.1| chromosomal replication initiation protein [Haemophilus influenzae PittII] gi|145272514|gb|EDK12421.1| chromosomal replication initiation protein [Haemophilus influenzae PittII] Length = 454 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 30/153 (19%), Positives = 67/153 (43%), Gaps = 11/153 (7%) Query: 92 RFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFP 148 +F +SLD++L+D DI + + FHI N++ + +++T+ +P Sbjct: 209 QFKKFYRSLDALLVD--------DIQFFAEKEKTQEEFFHIFNNLFETGRQIILTSDRYP 260 Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 L SR I PD + +++K + + + +++A +I QR+ + Sbjct: 261 KEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNLNLPEEVAFFIAQRLRTN 320 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + E ++++ + +G I + LK+ Sbjct: 321 VRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353 >gi|227502242|ref|ZP_03932291.1| chromosomal replication initiation protein [Corynebacterium accolens ATCC 49725] gi|227077066|gb|EEI15029.1| chromosomal replication initiation protein [Corynebacterium accolens ATCC 49725] Length = 382 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 26/124 (20%), Positives = 54/124 (43%), Gaps = 11/124 (8%) Query: 89 RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTAR 145 R F ++LD +++D DI L+ ++ + FH N++HQ + +++++ Sbjct: 128 RQESFKRRYRNLDILMVD--------DIQFLEGKESTQEEFFHTFNALHQANKQIILSSD 179 Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 P L +R + + I PD + +++K A +D+ + I R Sbjct: 180 RPPKQLTTLEDRLRTRFEGGLITDIQPPDLETRIAILMKKAAADGTEVDRSVLELIASRF 239 Query: 206 ERSL 209 E S+ Sbjct: 240 ESSI 243 >gi|332087942|gb|EGI93067.1| dnaA regulatory inactivator Hda [Shigella boydii 5216-82] Length = 225 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 28/117 (23%), Positives = 59/117 (50%), Gaps = 3/117 (2%) Query: 126 LFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEKVIV 183 +F + N I + + LL+T P + LPDL SRL + K+ L D+D L+ + + Sbjct: 109 IFDLYNRIQESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQL 168 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + R + + + ++++R++R + +D++D +++ +T E+LK Sbjct: 169 RARL-RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 224 >gi|224477956|ref|YP_002635562.1| chromosomal replication initiation protein [Staphylococcus carnosus subsp. carnosus TM300] gi|254777913|sp|B9DPX4|DNAA_STACT RecName: Full=Chromosomal replication initiator protein DnaA gi|222422563|emb|CAL29377.1| chromosomal replication initiator protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 453 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 32/158 (20%), Positives = 69/158 (43%), Gaps = 5/158 (3%) Query: 88 SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTF 147 + + +F +++D +LID ++ I + + FH N +HQ +++++ Sbjct: 201 NETEQFREKYRNIDVLLIDD-----IQFIQNKEQTQEEFFHTFNDLHQTGKQIVISSDRP 255 Query: 148 PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER 207 P L SR + +V I+ PD + ++ K + + I + YI +++ Sbjct: 256 PKEIAKLEDRLRSRFEWGLIVDITPPDYETRMAILQKKLEEEDVDIPLESLTYIANQIQS 315 Query: 208 SLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 ++ E + ++ + + IT L AE LK+ Q Sbjct: 316 NIRELEGALTRVIAYSRLQNEAITTELTAEALKDIIQT 353 >gi|118396729|ref|XP_001030702.1| ATPase, AAA family protein [Tetrahymena thermophila] gi|89285014|gb|EAR83039.1| ATPase, AAA family protein [Tetrahymena thermophila SB210] Length = 354 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 16/42 (38%), Positives = 27/42 (64%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL 104 P R ++L GP G+GK+ +A + +S +T ++ A +DSIL Sbjct: 145 PPRGILLFGPPGNGKTLIAKAVATESNATFYNISANEIDSIL 186 >gi|169806503|ref|XP_001827996.1| ATPase of the AAA+ class [Enterocytozoon bieneusi H348] gi|161779136|gb|EDQ31161.1| ATPase of the AAA+ class [Enterocytozoon bieneusi H348] Length = 419 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 10/77 (12%) Query: 36 LGISRDDLLVHSAIEQAVRLIDSWPSW----------PSRVVILVGPSGSGKSCLANIWS 85 + IS +D++ + ++QA++ I WP P + ++L GP G+GK+ + + Sbjct: 140 MSISWNDIIGLNKVKQAIKEIIIWPMLRPDIFVGLRNPPKGLLLFGPPGTGKTMIGKCIA 199 Query: 86 DKSRSTRFSNIAKSLDS 102 + +T FS A SL S Sbjct: 200 AQVNATFFSISASSLTS 216 >gi|83721115|ref|YP_441539.1| lipid A export ATP-binding/permease MsbA [Burkholderia thailandensis E264] gi|257139772|ref|ZP_05588034.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia thailandensis E264] gi|122064495|sp|Q2SZW0|MSBA_BURTA RecName: Full=Lipid A export ATP-binding/permease protein MsbA gi|83654940|gb|ABC39003.1| lipid A export ATP-binding/permease protein MsbA [Burkholderia thailandensis E264] Length = 596 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 5/71 (7%) Query: 58 SWPSWPSRVVILVGPSGSGKSCLANI----WSDKSRSTRFSNIAKSLDSILIDTRKPVLL 113 S+ P +V L GPSGSGK+ L N+ + S + R +A S L D R + + Sbjct: 376 SFTVAPGEMVALAGPSGSGKTTLVNLLPRFFDPSSGTVRVDGVALPEYS-LHDLRNQIAM 434 Query: 114 EDIDLLDFNDT 124 D++ FNDT Sbjct: 435 VSQDVVLFNDT 445 >gi|167835969|ref|ZP_02462852.1| ABC transporter, permease/ATP-binding protein [Burkholderia thailandensis MSMB43] Length = 574 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 5/71 (7%) Query: 58 SWPSWPSRVVILVGPSGSGKSCLANI----WSDKSRSTRFSNIAKSLDSILIDTRKPVLL 113 S+ P +V L GPSGSGK+ L N+ + S + R +A S L D R + + Sbjct: 354 SFTVAPGEMVALAGPSGSGKTTLVNLLPRFFDPSSGAVRVDGVALPEYS-LHDLRNQIAM 412 Query: 114 EDIDLLDFNDT 124 D++ FNDT Sbjct: 413 VSQDVVLFNDT 423 >gi|124025331|ref|YP_001014447.1| chromosomal replication initiation protein [Prochlorococcus marinus str. NATL1A] gi|166214689|sp|A2C122|DNAA_PROM1 RecName: Full=Chromosomal replication initiator protein DnaA gi|123960399|gb|ABM75182.1| chromosomal replication initiator protein DnaA [Prochlorococcus marinus str. NATL1A] Length = 464 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 31/152 (20%), Positives = 61/152 (40%), Gaps = 5/152 (3%) Query: 93 FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWG 152 F N + D IL+D ++ I+ ++ + FH N++H+ +++T+ P Sbjct: 215 FRNRYREADLILVDD-----IQFIEGKEYTQEEFFHTFNALHEAGRQIVLTSDRPPSQIP 269 Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 L SR + I PD + ++ K ++ + + L +I R ++ Sbjct: 270 RLQERLISRFSMGLIADIQAPDLETRMAILQKKAEHERMRLPRDLIQFIAGRFTSNIREL 329 Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 E + A G+ +T A +L T Q Sbjct: 330 EGAFTRAVAFASITGLPMTVESVAPMLDPTGQ 361 >gi|29347553|ref|NP_811056.1| chromosomal replication initiation protein [Bacteroides thetaiotaomicron VPI-5482] gi|253572014|ref|ZP_04849418.1| chromosomal replication initiator protein dnaA [Bacteroides sp. 1_1_6] gi|298383755|ref|ZP_06993316.1| ATPase involved in DNA replication initiation [Bacteroides sp. 1_1_14] gi|38257553|sp|Q8A5U5|DNAA_BACTN RecName: Full=Chromosomal replication initiator protein DnaA gi|29339453|gb|AAO77250.1| chromosomal replication initiator protein dnaA [Bacteroides thetaiotaomicron VPI-5482] gi|251838194|gb|EES66281.1| chromosomal replication initiator protein dnaA [Bacteroides sp. 1_1_6] gi|298263359|gb|EFI06222.1| ATPase involved in DNA replication initiation [Bacteroides sp. 1_1_14] Length = 470 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 31/135 (22%), Positives = 54/135 (40%), Gaps = 33/135 (24%) Query: 67 VILVGPSGSGKSCLAN--------IWSDK--------------------SRSTRFSNIAK 98 + L G SG GK+ LAN +++DK + + F N + Sbjct: 169 LFLYGASGVGKTHLANAIGTKIKELYADKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQ 228 Query: 99 SLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158 ++D ++ID +++ + FHI N +HQ L++T+ PV L Sbjct: 229 TIDVLIIDD-----IQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVLLQGMEERL 283 Query: 159 CSRLKAATVVKISLP 173 +R K V ++ P Sbjct: 284 LTRFKWGMVAELEKP 298 >gi|120555908|ref|YP_960259.1| ABC transporter related [Marinobacter aquaeolei VT8] gi|120325757|gb|ABM20072.1| ABC transporter related protein [Marinobacter aquaeolei VT8] Length = 274 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 41/188 (21%), Positives = 75/188 (39%), Gaps = 25/188 (13%) Query: 69 LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD----FNDT 124 ++GP+G+GK+ + +I + K+R S S ++L +P DI L F Sbjct: 62 IIGPNGAGKTTMMDIITGKTRPDTGSVWFGSRHNLL-RMNEP----DIATLGIGRKFQKP 116 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL--------------KAATVVKI 170 +F + + ++ R P + + R+ K A + + Sbjct: 117 TVFEALTVFENLELAMAADKRILPTLTAIMTAEYRDRIDEILEMIGLQALRDKPAGI--L 174 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 S +LE ++ M R + +D+ +A Q MER+ L K + + MG Sbjct: 175 SHGQKQWLEIGMLLMQKPRLLLVDEPVAGMTEQEMERTAELLTSLAGKQSVVVVEHDMGF 234 Query: 231 TRSLAAEV 238 RS+A +V Sbjct: 235 VRSIARKV 242 >gi|182680573|ref|YP_001828733.1| chromosomal replication initiation protein [Xylella fastidiosa M23] gi|182630683|gb|ACB91459.1| chromosomal replication initiator protein DnaA [Xylella fastidiosa M23] Length = 443 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 37/167 (22%), Positives = 67/167 (40%), Gaps = 12/167 (7%) Query: 78 SCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIH 134 S + DKS +F +D++LID DI D + FH N++ Sbjct: 184 SAMIRALQDKSMD-QFKRQFHQIDALLID--------DIQFFAGKDRTQEEFFHTFNALF 234 Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194 +++T +P P L SRL V I PD + +++ +R I Sbjct: 235 DGKQQIILTCDRYPREVNGLEPRLKSRLAWGLSVAIDPPDFETRAAIVLAKARERGATIP 294 Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++A I ++M ++ E ++ + A G +T + E L++ Sbjct: 295 DEVAFLIAKKMHSNVRDLEGALNTLVARANFTGRAVTIEFSQETLRD 341 >gi|171741734|ref|ZP_02917541.1| hypothetical protein BIFDEN_00825 [Bifidobacterium dentium ATCC 27678] gi|306823996|ref|ZP_07457370.1| DNA-directed DNA replication initiator protein [Bifidobacterium dentium ATCC 27679] gi|309801964|ref|ZP_07696078.1| chromosomal replication initiator protein DnaA [Bifidobacterium dentium JCVIHMP022] gi|171277348|gb|EDT45009.1| hypothetical protein BIFDEN_00825 [Bifidobacterium dentium ATCC 27678] gi|304552994|gb|EFM40907.1| DNA-directed DNA replication initiator protein [Bifidobacterium dentium ATCC 27679] gi|308221412|gb|EFO77710.1| chromosomal replication initiator protein DnaA [Bifidobacterium dentium JCVIHMP022] Length = 500 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 33/166 (19%), Positives = 67/166 (40%), Gaps = 11/166 (6%) Query: 79 CLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQ 135 L + + + F+ + +D +LID DI L + Q FH N++HQ Sbjct: 237 ALGDTNQNSGQIKEFNRRYREVDVLLID--------DIQFLSGKEATLEQFFHTFNTLHQ 288 Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195 + +++ + P L SR ++ V + PD + ++ M I Sbjct: 289 ANKRIVIASDVPPKDLKGFQARLISRFESGLTVDVKPPDLETRIAILRMMATMNGSNIPN 348 Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I +R ++ E ++++ +A +TR+LA L++ Sbjct: 349 DVLNLIAERFTENIRELEGALNRVTAMASLSNQPVTRALAEHTLQD 394 >gi|329945795|ref|ZP_08293482.1| ABC transporter, ATP-binding protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328528243|gb|EGF55221.1| ABC transporter, ATP-binding protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 1264 Score = 37.4 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 52/117 (44%), Gaps = 22/117 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P V L+GPSGSGKS LA + IA+ D V + +DL D + Sbjct: 423 PGTVTALLGPSGSGKSTLATL------------IARFADP----DAGAVRIGGVDLRDMD 466 Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI-----SLPD 174 + L+ ++ I Q D+ LL T +S G DL AA V +I +LPD Sbjct: 467 EDTLYSTVSFILQ-DAQLLGTTVRENISLGRPDADLEQVRAAARVARIDEEIMALPD 522 >gi|283454960|ref|YP_003359524.1| chromosomal replication initiator protein DnaA [Bifidobacterium dentium Bd1] gi|283101594|gb|ADB08700.1| chromosomal replication initiator protein DnaA [Bifidobacterium dentium Bd1] Length = 500 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 33/166 (19%), Positives = 67/166 (40%), Gaps = 11/166 (6%) Query: 79 CLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQ 135 L + + + F+ + +D +LID DI L + Q FH N++HQ Sbjct: 237 ALGDTNQNSGQIKEFNRRYREVDVLLID--------DIQFLSGKEATLEQFFHTFNTLHQ 288 Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195 + +++ + P L SR ++ V + PD + ++ M I Sbjct: 289 ANKRIVIASDVPPKDLKGFQARLISRFESGLTVDVKPPDLETRIAILRMMATMNGSNIPN 348 Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I +R ++ E ++++ +A +TR+LA L++ Sbjct: 349 DVLNLIAERFTENIRELEGALNRVTAMASLSNQPVTRALAEHTLQD 394 >gi|325922759|ref|ZP_08184493.1| chromosomal replication initiator protein DnaA [Xanthomonas gardneri ATCC 19865] gi|325546755|gb|EGD17875.1| chromosomal replication initiator protein DnaA [Xanthomonas gardneri ATCC 19865] Length = 442 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 43/198 (21%), Positives = 77/198 (38%), Gaps = 23/198 (11%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTR-------------FSNIAKSLDSILIDTRK---- 109 ++L G +G GK+ L + R FS + ++L +D K Sbjct: 143 LLLYGSTGLGKTHLMFAAGNALRQANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQ 202 Query: 110 ---PVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 +L++DI D + FH N++ +++T +P P L SRL Sbjct: 203 QIDALLIDDIQFFAGKDRTQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLA 262 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 V I PD + +++ +R I +A I ++M ++ E ++ + A Sbjct: 263 WGLSVAIDPPDFETRAAIVLAKARERGADIPDDVAFLIAKKMRSNVRDLEGALNTLVARA 322 Query: 224 LSRGMGITRSLAAEVLKE 241 G IT A E L++ Sbjct: 323 NFTGRSITVEFAQETLRD 340 >gi|28197946|ref|NP_778260.1| chromosomal replication initiation protein [Xylella fastidiosa Temecula1] gi|32129493|sp|Q87FC6|DNAA_XYLFT RecName: Full=Chromosomal replication initiator protein DnaA gi|28056006|gb|AAO27909.1| chromosomal replication initiator [Xylella fastidiosa Temecula1] gi|307579027|gb|ADN62996.1| chromosomal replication initiation protein [Xylella fastidiosa subsp. fastidiosa GB514] Length = 439 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 37/167 (22%), Positives = 67/167 (40%), Gaps = 12/167 (7%) Query: 78 SCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIH 134 S + DKS +F +D++LID DI D + FH N++ Sbjct: 180 SAMIRALQDKSMD-QFKRQFHQIDALLID--------DIQFFAGKDRTQEEFFHTFNALF 230 Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194 +++T +P P L SRL V I PD + +++ +R I Sbjct: 231 DGKQQIILTCDRYPREVNGLEPRLKSRLAWGLSVAIDPPDFETRAAIVLAKARERGATIP 290 Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++A I ++M ++ E ++ + A G +T + E L++ Sbjct: 291 DEVAFLIAKKMHSNVRDLEGALNTLVARANFTGRAVTIEFSQETLRD 337 >gi|34763037|ref|ZP_00144012.1| ATP-binding protein (contains P-loop) [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|237742019|ref|ZP_04572500.1| ATP-binding protein [Fusobacterium sp. 4_1_13] gi|256845360|ref|ZP_05550818.1| ATP-binding protein [Fusobacterium sp. 3_1_36A2] gi|294785343|ref|ZP_06750631.1| ATP-binding protein (contains P-loop) [Fusobacterium sp. 3_1_27] gi|27887297|gb|EAA24393.1| ATP-binding protein (contains P-loop) [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|229429667|gb|EEO39879.1| ATP-binding protein [Fusobacterium sp. 4_1_13] gi|256718919|gb|EEU32474.1| ATP-binding protein [Fusobacterium sp. 3_1_36A2] gi|294487057|gb|EFG34419.1| ATP-binding protein (contains P-loop) [Fusobacterium sp. 3_1_27] Length = 288 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 2/72 (2%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 ++I+ G SG+GK+ NI D + T N+ L+ L+DT L ID+ F +T Sbjct: 5 HIIIVTGLSGAGKTTALNILEDMNYYT-IDNLPLGLEKSLLDTEIEKLAVGIDIRTFKNT 63 Query: 125 Q-LFHIINSIHQ 135 + F IN I + Sbjct: 64 KDFFKFINYIKE 75 >gi|71901968|ref|ZP_00684019.1| chromosomal replication initiator protein, DnaA [Xylella fastidiosa Ann-1] gi|71728273|gb|EAO30453.1| chromosomal replication initiator protein, DnaA [Xylella fastidiosa Ann-1] Length = 443 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 37/167 (22%), Positives = 67/167 (40%), Gaps = 12/167 (7%) Query: 78 SCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIH 134 S + DKS +F +D++LID DI D + FH N++ Sbjct: 184 SAMIRALQDKSMD-QFKRQFHQIDALLID--------DIQFFAGKDRTQEEFFHTFNALF 234 Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194 +++T +P P L SRL V I PD + +++ +R I Sbjct: 235 DGKQQIILTCDRYPREVNGLEPRLKSRLAWGLSVAIDPPDFETRAAIVLAKARERGATIP 294 Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++A I ++M ++ E ++ + A G +T + E L++ Sbjct: 295 DEVAFLIAKKMHSNVRDLEGALNTLVARANFTGRAVTIEFSQETLRD 341 >gi|237744871|ref|ZP_04575352.1| ATP-binding protein [Fusobacterium sp. 7_1] gi|229432100|gb|EEO42312.1| ATP-binding protein [Fusobacterium sp. 7_1] Length = 290 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 2/72 (2%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 ++I+ G SG+GK+ NI D + T N+ L+ L+DT L ID+ F +T Sbjct: 5 HIIIVTGLSGAGKTTALNILEDMNYYT-IDNLPLGLEKSLLDTEIEKLAVGIDIRTFKNT 63 Query: 125 Q-LFHIINSIHQ 135 + F IN I + Sbjct: 64 KDFFKFINYIKE 75 >gi|260494652|ref|ZP_05814782.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33] gi|260197814|gb|EEW95331.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33] Length = 290 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 2/72 (2%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 ++I+ G SG+GK+ NI D + T N+ L+ L+DT L ID+ F +T Sbjct: 5 HIIIVTGLSGAGKTTALNILEDMNYYT-IDNLPLGLEKSLLDTEIEKLAVGIDIRTFKNT 63 Query: 125 Q-LFHIINSIHQ 135 + F IN I + Sbjct: 64 KDFFKFINYIKE 75 >gi|325915701|ref|ZP_08178006.1| chromosomal replication initiator protein DnaA [Xanthomonas vesicatoria ATCC 35937] gi|325538118|gb|EGD09809.1| chromosomal replication initiator protein DnaA [Xanthomonas vesicatoria ATCC 35937] Length = 442 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 43/198 (21%), Positives = 77/198 (38%), Gaps = 23/198 (11%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTR-------------FSNIAKSLDSILIDTRK---- 109 ++L G +G GK+ L + R FS + ++L +D K Sbjct: 143 LLLYGSTGLGKTHLMFAAGNALRQANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQ 202 Query: 110 ---PVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 +L++DI D + FH N++ +++T +P P L SRL Sbjct: 203 QIDALLIDDIQFFAGKDRTQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLA 262 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 V I PD + +++ +R I +A I ++M ++ E ++ + A Sbjct: 263 WGLSVAIDPPDFETRAAIVLAKARERGADIPDDVAFLIAKKMRSNVRDLEGALNTLVARA 322 Query: 224 LSRGMGITRSLAAEVLKE 241 G IT A E L++ Sbjct: 323 NFTGRSITVEFAQETLRD 340 >gi|77917619|ref|YP_355434.1| chromosomal replication initiation protein [Pelobacter carbinolicus DSM 2380] gi|77543702|gb|ABA87264.1| chromosomal replication initiator protein DnaA [Pelobacter carbinolicus DSM 2380] Length = 452 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 36/150 (24%), Positives = 71/150 (47%), Gaps = 7/150 (4%) Query: 93 FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWG 152 F +S+D +LID ++ I + + FH N+++ +++T+ FP Sbjct: 207 FRTKFRSMDVLLIDD-----VQFIAGKERTQEEFFHTFNALYDSHKQIVVTSDKFPKEIP 261 Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ-IFIDKKLAAYIVQRMERSLVF 211 L SR + + I PD + ++ I+KM A++ I + K++A ++ + ++ Sbjct: 262 GLEERLRSRFEWGLIADIQAPDME-TKQAILKMKAEQNGIDLPKEVALFLASAVSSNIRE 320 Query: 212 AEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 E + ++ A IT S+A EVLK+ Sbjct: 321 LEGYLVRIGAYASLTATPITLSMAQEVLKD 350 >gi|330916411|ref|XP_003297409.1| hypothetical protein PTT_07804 [Pyrenophora teres f. teres 0-1] gi|311329919|gb|EFQ94491.1| hypothetical protein PTT_07804 [Pyrenophora teres f. teres 0-1] Length = 789 Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 19/40 (47%), Positives = 27/40 (67%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P+R ++L GP G+GK+ LA + +SRST F+ A SL S Sbjct: 533 PARGMLLFGPPGTGKTMLARAVATESRSTFFAISASSLTS 572 >gi|315500819|ref|YP_004079706.1| chromosomal replication initiator protein dnaa [Micromonospora sp. L5] gi|315407438|gb|ADU05555.1| chromosomal replication initiator protein DnaA [Micromonospora sp. L5] Length = 609 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 29/134 (21%), Positives = 60/134 (44%), Gaps = 3/134 (2%) Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 +L++DI L+ + + FH N++H + +++T+ P L +R + + Sbjct: 371 LLIDDIQFLENRERTQEEFFHTFNTLHNANKQIVITSDRSPKQLATLEDRLRTRFEWGLL 430 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 I PD + ++ K A ++F + +I R+ S+ E + ++ A Sbjct: 431 ADIQPPDLETRIAILQKKAAQERLFAPPDVLEFIASRVSNSIRELEGALIRVTAFASLTR 490 Query: 228 MGITRSLAAEVLKE 241 + SLA EVL++ Sbjct: 491 SSVELSLAEEVLRD 504 >gi|290957939|ref|YP_003489121.1| ATP-binding protein [Streptomyces scabiei 87.22] gi|260647465|emb|CBG70570.1| putative ATP-binding protein [Streptomyces scabiei 87.22] Length = 209 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 18/26 (69%), Positives = 20/26 (76%) Query: 56 IDSWPSWPSRVVILVGPSGSGKSCLA 81 + S P PSRVV+L GPSGSGKS LA Sbjct: 1 MSSHPPIPSRVVLLTGPSGSGKSLLA 26 >gi|227506187|ref|ZP_03936236.1| chromosomal replication initiation protein [Corynebacterium striatum ATCC 6940] gi|227197211|gb|EEI77259.1| chromosomal replication initiation protein [Corynebacterium striatum ATCC 6940] Length = 537 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 26/124 (20%), Positives = 54/124 (43%), Gaps = 11/124 (8%) Query: 89 RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTAR 145 R F ++LD +++D DI L+ ++ + FH N++HQ + +++++ Sbjct: 283 RQESFKRRYRNLDILMVD--------DIQFLEGKESTQEEFFHTFNALHQANKQIILSSD 334 Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 P L +R + + I PD + +++K A +D+ + I R Sbjct: 335 RPPKQLTTLEDRLRTRFEGGLITDIQPPDLETRIAILMKKAAADGTEVDRSVLELIASRF 394 Query: 206 ERSL 209 E S+ Sbjct: 395 ESSI 398 >gi|12044917|ref|NP_072727.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G37] gi|1351474|sp|P47311|Y065_MYCGE RecName: Full=Putative ABC transporter ATP-binding protein MG065 gi|1045740|gb|AAC71283.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G37] gi|166078865|gb|ABY79483.1| ABC transporter, ATP-binding protein [synthetic Mycoplasma genitalium JCVI-1.0] Length = 466 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 27/43 (62%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109 ++++GPSGSGK+ L NI S R++ S I + I ++ RK Sbjct: 265 IVILGPSGSGKTTLLNIISGMDRASSGSVIVNGYNMICLNDRK 307 >gi|251794037|ref|YP_003008768.1| chromosomal replication initiation protein [Paenibacillus sp. JDR-2] gi|247541663|gb|ACS98681.1| chromosomal replication initiator protein DnaA [Paenibacillus sp. JDR-2] Length = 450 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 35/157 (22%), Positives = 66/157 (42%), Gaps = 11/157 (7%) Query: 88 SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTA 144 +R F N +++D +LID DI L D + FH N++H+ +++++ Sbjct: 197 NRGESFRNKYRNIDVLLID--------DIQFLAGKDGTQEEFFHTFNALHEERKQIVISS 248 Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 P L SR + + I PD + ++ K + I + YI + Sbjct: 249 DRTPKEIPTLEERLRSRFEWGLITDIQAPDLETRIAILRKKAKAENLDIPNEAMVYIANQ 308 Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++ ++ E + ++ + IT LAAE LK+ Sbjct: 309 IDTNIRELEGALIRVVAYSSLINQDITSHLAAEALKD 345 >gi|145592567|ref|YP_001156864.1| chromosomal replication initiator protein DnaA [Salinispora tropica CNB-440] gi|145301904|gb|ABP52486.1| chromosomal replication initiator protein DnaA [Salinispora tropica CNB-440] Length = 587 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 29/134 (21%), Positives = 60/134 (44%), Gaps = 3/134 (2%) Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 +L++DI L+ + + FH N++H + +++T+ P L +R + + Sbjct: 349 LLIDDIQFLENRERTQEEFFHTFNTLHNANKQIVITSDRSPKQLATLEDRLRTRFEWGLL 408 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 I PD + ++ K A ++F + +I R+ S+ E + ++ A Sbjct: 409 ADIQPPDLETRIAILQKKAAQERLFAPPDVLEFIASRVSNSIRELEGALIRVTAFASLTR 468 Query: 228 MGITRSLAAEVLKE 241 + SLA EVL++ Sbjct: 469 SSVELSLAEEVLRD 482 >gi|145588795|ref|YP_001155392.1| lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047201|gb|ABP33828.1| lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 587 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 3/65 (4%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL---DSILIDTRKPVLLEDIDLL 119 P VV VGPSG GKS L N+ + T + D +L D RK + D++ Sbjct: 370 PGEVVAFVGPSGGGKSTLVNLLPRFFKPTSGHIFLDGIPLEDILLSDVRKQIAFVSQDVI 429 Query: 120 DFNDT 124 FND+ Sbjct: 430 LFNDS 434 >gi|302864509|ref|YP_003833146.1| chromosomal replication initiator protein DnaA [Micromonospora aurantiaca ATCC 27029] gi|302567368|gb|ADL43570.1| chromosomal replication initiator protein DnaA [Micromonospora aurantiaca ATCC 27029] Length = 607 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 29/134 (21%), Positives = 60/134 (44%), Gaps = 3/134 (2%) Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 +L++DI L+ + + FH N++H + +++T+ P L +R + + Sbjct: 369 LLIDDIQFLENRERTQEEFFHTFNTLHNANKQIVITSDRSPKQLATLEDRLRTRFEWGLL 428 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 I PD + ++ K A ++F + +I R+ S+ E + ++ A Sbjct: 429 ADIQPPDLETRIAILQKKAAQERLFAPPDVLEFIASRVSNSIRELEGALIRVTAFASLTR 488 Query: 228 MGITRSLAAEVLKE 241 + SLA EVL++ Sbjct: 489 SSVELSLAEEVLRD 502 >gi|253581087|ref|ZP_04858347.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847623|gb|EES75593.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 451 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 31/157 (19%), Positives = 71/157 (45%), Gaps = 5/157 (3%) Query: 85 SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTA 144 + S T+F +++D +L+D + ++ ++ +F FH NS+H +++++ Sbjct: 195 GNNSAMTKFREKYRNIDVLLVDDIQFIIGKESTQEEF-----FHTFNSLHSAKKQIIISS 249 Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 P + SR + + I+LPD + ++ K I++++ YI Sbjct: 250 DKPPKDMEILEERFRSRFEWGLIADITLPDYETRMAILHKKEEMDGYDINEEVIKYIANN 309 Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++ ++ E ++K+ A +T LA + LK+ Sbjct: 310 IKSNIRELEGAINKVMAFAKLEKKEVTLELAEQALKD 346 >gi|256026594|ref|ZP_05440428.1| hypothetical protein PrD11_01105 [Fusobacterium sp. D11] gi|289764597|ref|ZP_06523975.1| ATP-binding protein [Fusobacterium sp. D11] gi|289716152|gb|EFD80164.1| ATP-binding protein [Fusobacterium sp. D11] Length = 150 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 2/72 (2%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 ++I+ G SG+GK+ NI D + T N+ L+ L+DT L ID+ F +T Sbjct: 5 HIIIVTGLSGAGKTTALNILEDMNYYT-IDNLPLGLEKSLLDTEIEKLAVGIDIRTFKNT 63 Query: 125 Q-LFHIINSIHQ 135 + F IN I + Sbjct: 64 KDFFKFINYIKE 75 >gi|254303069|ref|ZP_04970427.1| possible ATP-binding protein [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323261|gb|EDK88511.1| possible ATP-binding protein [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 290 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 2/72 (2%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 ++I+ G SG+GK+ NI D + T N+ L+ L+DT L ID+ F +T Sbjct: 5 HIIIVTGLSGAGKTTALNILEDMNYYT-IDNLPLGLEKSLLDTEIEKLAVGIDIRTFKNT 63 Query: 125 Q-LFHIINSIHQ 135 + F IN I + Sbjct: 64 KDFFKFINYIKE 75 >gi|255660193|ref|ZP_05405602.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G37] Length = 474 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 27/43 (62%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109 ++++GPSGSGK+ L NI S R++ S I + I ++ RK Sbjct: 273 IVILGPSGSGKTTLLNIISGMDRASSGSVIVNGYNMICLNDRK 315 >gi|284034944|ref|YP_003384874.1| chromosomal replication initiator protein DnaA [Spirosoma linguale DSM 74] gi|283814237|gb|ADB36075.1| chromosomal replication initiator protein DnaA [Spirosoma linguale DSM 74] Length = 469 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 6/118 (5%) Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 FHI N +HQ ++MT+ P + L SR K + PD + +I K Sbjct: 253 FFHIFNHLHQSGKQIIMTSDRAPRALDGLEDRLLSRFKWGLSADLQTPDLETRIAIIQKK 312 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEK-LVDKMDNLALSRGMGITRSLAAEVLKET 242 I+ID + Y+ + ++ E +V M +L+R R + E+ K+T Sbjct: 313 LQAEGIYIDDTVIEYLAHSVNTNVRELEGVIVSLMAQASLNR-----REIDLELAKQT 365 >gi|166709896|ref|ZP_02241103.1| chromosomal replication initiation protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 442 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 43/198 (21%), Positives = 78/198 (39%), Gaps = 23/198 (11%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTR-------------FSNIAKSLDSILIDTRK---- 109 ++L G +G GK+ L + R + FS + ++L +D K Sbjct: 143 LLLYGSTGLGKTHLMFAAGNALRQAKPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQ 202 Query: 110 ---PVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 +L++DI D + FH N++ +++T +P P L SRL Sbjct: 203 QIDALLIDDIQFFAGKDRTQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLA 262 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 V I PD + +++ +R I +A I ++M ++ E ++ + A Sbjct: 263 WGLSVAIDPPDFETRAAIVLAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARA 322 Query: 224 LSRGMGITRSLAAEVLKE 241 G IT A E L++ Sbjct: 323 NFTGRLITVEFAQETLRD 340 >gi|150951678|ref|XP_001388033.2| member of the AAA ATPase family of proteins [Scheffersomyces stipitis CBS 6054] gi|149388797|gb|EAZ64010.2| member of the AAA ATPase family of proteins [Pichia stipitis CBS 6054] Length = 810 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 19/40 (47%), Positives = 27/40 (67%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P+R ++L GP G+GK+ LA + +S+ST FS A SL S Sbjct: 560 PTRGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTS 599 >gi|254573080|ref|XP_002493649.1| Putative ATPase of the AAA family [Pichia pastoris GS115] gi|238033448|emb|CAY71470.1| Putative ATPase of the AAA family [Pichia pastoris GS115] gi|328354523|emb|CCA40920.1| Protein SAP1 [Pichia pastoris CBS 7435] Length = 719 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 19/40 (47%), Positives = 27/40 (67%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P+R ++L GP G+GK+ LA + +S+ST FS A SL S Sbjct: 469 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTS 508 >gi|145224707|ref|YP_001135385.1| ABC transporter related [Mycobacterium gilvum PYR-GCK] gi|145217193|gb|ABP46597.1| ABC transporter related protein [Mycobacterium gilvum PYR-GCK] Length = 241 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 1/80 (1%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS-NIAKSLDSILIDTRKPVLLEDIDLLDF 121 P V L+GPSGSGKS L NI R T+ + IA + + L +++ L D F Sbjct: 50 PGEFVCLMGPSGSGKSTLLNIIGGLDRPTKGNVRIAGTDTATLTESQYAALRHDTIGFIF 109 Query: 122 NDTQLFHIINSIHQYDSSLL 141 L ++++ + L+ Sbjct: 110 QSYNLIPFLSAVENVELPLM 129 >gi|88798539|ref|ZP_01114123.1| chromosomal replication initiation protein [Reinekea sp. MED297] gi|88778639|gb|EAR09830.1| chromosomal replication initiation protein [Reinekea sp. MED297] Length = 495 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 11/152 (7%) Query: 93 FSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPV 149 F +SLD++LID DI D + + FH N++ + + +++T FP Sbjct: 250 FKRFYRSLDALLID--------DIQFFAKKDRSQEEFFHTFNALLEGNQQVILTCDRFPK 301 Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209 L SR V + PD + +++K ++ + + A +I QR+ ++ Sbjct: 302 EIDGLEDRLKSRFGWGLTVAVEPPDLETRVAILMKKAEQAKVKLPAESAFFIAQRIRSNV 361 Query: 210 VFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 E + ++ A G I +L E LK+ Sbjct: 362 RELEGALKRVIANAQFIGAPIDTALVKEALKD 393 >gi|217968466|ref|YP_002353700.1| chromosomal replication initiation protein [Thauera sp. MZ1T] gi|217505793|gb|ACK52804.1| chromosomal replication initiator protein DnaA [Thauera sp. MZ1T] Length = 500 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 36/152 (23%), Positives = 65/152 (42%), Gaps = 11/152 (7%) Query: 93 FSNIAKSLDSILIDTRKPVLLEDIDLLDF-NDTQ--LFHIINSIHQYDSSLLMTARTFPV 149 F +SLD ++ID DI + N TQ FH N++ + +++T T+P Sbjct: 255 FKRYYRSLDMLIID--------DIQFFNNKNRTQEEFFHAFNALTEARKQIVITCDTYPK 306 Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209 L SR V+I P+ + ++ K ++ +D +A I + + ++ Sbjct: 307 DIQGLEDRLISRFDWGLTVQIEPPELEMRVAILKKKAEALRVLVDDDVAFLIAKNLRSNV 366 Query: 210 VFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 E ++K+ A G I +A E LK+ Sbjct: 367 RELEGALNKVVAYARFHGRQIGLEVAKEALKD 398 >gi|159035675|ref|YP_001534928.1| chromosomal replication initiator protein DnaA [Salinispora arenicola CNS-205] gi|157914510|gb|ABV95937.1| chromosomal replication initiator protein DnaA [Salinispora arenicola CNS-205] Length = 591 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 29/134 (21%), Positives = 60/134 (44%), Gaps = 3/134 (2%) Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 +L++DI L+ + + FH N++H + +++T+ P L +R + + Sbjct: 353 LLIDDIQFLENRERTQEEFFHTFNTLHNANKQIVITSDRSPKQLATLEDRLRTRFEWGLL 412 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 I PD + ++ K A ++F + +I R+ S+ E + ++ A Sbjct: 413 ADIQPPDLETRIAILQKKAAQERLFAPPDVLEFIASRVSNSIRELEGALIRVTAFASLTR 472 Query: 228 MGITRSLAAEVLKE 241 + SLA EVL++ Sbjct: 473 SSVELSLAEEVLRD 486 >gi|49478775|ref|YP_038869.1| ABC transporter ATP-binding protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49330331|gb|AAT60977.1| ABC transporter, ATP-binding protein [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 256 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 44/101 (43%), Gaps = 16/101 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V ++GPSGSGK+ L NI S +++ ILID + V + D +L F L Sbjct: 37 VGIMGPSGSGKTTLLNILSTIDTASK--------GEILIDGKDIVKMNDDELALFRRNHL 88 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 I + D T V + LP S++KA V Sbjct: 89 GFIFQDYNLLD--------TLTVRENIALPLALSKVKAKEV 121 >gi|289613840|emb|CBI59323.1| unnamed protein product [Sordaria macrospora] Length = 902 Score = 37.0 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 19/40 (47%), Positives = 27/40 (67%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P+R ++L GP G+GK+ LA + +S+ST FS A SL S Sbjct: 610 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTS 649 >gi|332883707|gb|EGK03987.1| chromosomal replication initiator protein DnaA [Dysgonomonas mossii DSM 22836] Length = 467 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 8/125 (6%) Query: 84 WSDKSR---STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140 ++D R + F N + +D ++ID + ++ ++ LFHI N +HQ + L Sbjct: 209 YADAGRYNTTNDFINFYQGIDVLIIDD-----IHELAGIEKTQNTLFHIFNHLHQNNKQL 263 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 ++T P L +R + K+ PD K++ + I + + Y Sbjct: 264 ILTCDKSPSELHGVEERLLTRFRWGLTTKVDNPDKQLRLKILQNKILHDGLSIPEDVVDY 323 Query: 201 IVQRM 205 I + + Sbjct: 324 IAENV 328 >gi|228994231|ref|ZP_04154129.1| Efflux ABC transporter, ATP-binding protein [Bacillus pseudomycoides DSM 12442] gi|228765524|gb|EEM14180.1| Efflux ABC transporter, ATP-binding protein [Bacillus pseudomycoides DSM 12442] Length = 260 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 16/101 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V ++GPSGSGK+ L N+ S +T ILI+ + V + D L F L Sbjct: 41 VGIMGPSGSGKTTLLNVLSTIDNATN--------GEILIEGKDIVKMNDDKLALFRRNHL 92 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 I + D T V + LP SR+KA+ + Sbjct: 93 GFIFQDYNLLD--------TLTVKENIALPLALSRVKASEI 125 >gi|56477034|ref|YP_158623.1| chromosomal replication initiation protein [Aromatoleum aromaticum EbN1] gi|71151792|sp|Q5P4P0|DNAA_AROAE RecName: Full=Chromosomal replication initiator protein DnaA gi|56313077|emb|CAI07722.1| Chromosomal replication iniciator protein DnaA [Aromatoleum aromaticum EbN1] Length = 481 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 37/152 (24%), Positives = 66/152 (43%), Gaps = 11/152 (7%) Query: 93 FSNIAKSLDSILIDTRKPVLLEDIDLLDF-NDTQ--LFHIINSIHQYDSSLLMTARTFPV 149 F +SLD +LID DI + N TQ FH N++ + +++T T+P Sbjct: 236 FKRYYRSLDLLLID--------DIQFFNNKNRTQEEFFHAFNALTEARKQIVITCDTYPK 287 Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209 L SR V+I P+ + ++ K ++ + +A I + + ++ Sbjct: 288 DIQGLEDRLISRFDWGLTVQIEPPELEMRVAILQKKAEALRVDLHDDVAFLIAKNLRSNV 347 Query: 210 VFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 E ++K+ A G GIT +A + LK+ Sbjct: 348 RELEGALNKVVAFARFHGRGITLEVAKDALKD 379 >gi|322701880|gb|EFY93628.1| AAA family ATPase [Metarhizium acridum CQMa 102] Length = 774 Score = 37.0 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 19/40 (47%), Positives = 27/40 (67%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P+R ++L GP G+GK+ LA + +S+ST FS A SL S Sbjct: 518 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTS 557 >gi|237740768|ref|ZP_04571249.1| ATP-binding protein [Fusobacterium sp. 2_1_31] gi|229422785|gb|EEO37832.1| ATP-binding protein [Fusobacterium sp. 2_1_31] Length = 290 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 2/72 (2%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 ++I+ G SG+GK+ NI D + T N+ L+ L+DT L ID+ F +T Sbjct: 5 HIIIVTGLSGAGKTTALNILEDMNYYT-IDNLPLGLEKSLLDTEIEKLAVGIDIRTFKNT 63 Query: 125 Q-LFHIINSIHQ 135 + F IN I + Sbjct: 64 KDFFKFINYIKE 75 >gi|121595308|ref|YP_987204.1| chromosomal replication initiator DnaA [Acidovorax sp. JS42] gi|222111592|ref|YP_002553856.1| dnaa regulatory inactivator hda [Acidovorax ebreus TPSY] gi|120607388|gb|ABM43128.1| Chromosomal replication initiator, DnaA [Acidovorax sp. JS42] gi|221731036|gb|ACM33856.1| DnaA regulatory inactivator Hda [Acidovorax ebreus TPSY] Length = 230 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 14/183 (7%) Query: 69 LVGPSGSGKSCLANIWSDKSR----STRFSNIAKSLDSILIDTRKPVLLEDIDLLD-FND 123 L G +G+GKS L + R S + + + +L S + VLL+++ L Sbjct: 49 LWGETGTGKSHLLRATYEALRGQGASVGWLDASVALPSAFDERWSAVLLDEVHLYTTAQQ 108 Query: 124 TQLFH-IINSIHQYDSS--LLMTARTFPVSWGVCLP---DLCSRLKAATVVKISLPDDDF 177 F+ +N+I+ + + ++ A P + LP DL +RL V ++ L D+ Sbjct: 109 AAAFNWFVNAINPTEGAPRWVLAAGDLPPA---DLPLRDDLRTRLGWGHVFQLQLLDEQE 165 Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237 V+ + R IF+ ++ Y++ R R L +L+D++D+ AL +T L Sbjct: 166 RRAVLRQQADARGIFLADEVMNYMLGRFSRDLGSLMQLLDRLDSFALRTQRAVTVPLLKT 225 Query: 238 VLK 240 +L+ Sbjct: 226 MLE 228 >gi|320582077|gb|EFW96295.1| Putative ATPase of the AAA family [Pichia angusta DL-1] Length = 715 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 19/40 (47%), Positives = 27/40 (67%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P+R ++L GP G+GK+ LA + +S+ST FS A SL S Sbjct: 465 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTS 504 >gi|253566260|ref|ZP_04843714.1| chromosomal replication initiator protein dnaA [Bacteroides sp. 3_2_5] gi|251945364|gb|EES85802.1| chromosomal replication initiator protein dnaA [Bacteroides sp. 3_2_5] Length = 476 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 40/208 (19%), Positives = 80/208 (38%), Gaps = 33/208 (15%) Query: 67 VILVGPSGSGKSCLAN--------IWSDK--------------------SRSTRFSNIAK 98 + L G SG GK+ LAN ++ DK + + F N + Sbjct: 169 LFLHGASGVGKTHLANAIGTRIKELYPDKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQ 228 Query: 99 SLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158 ++D ++ID +++ + FHI N +HQ L++T+ PV L Sbjct: 229 TIDVLIIDD-----IQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVLLQGMEERL 283 Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218 +R K V ++ P + + ++ + ++ YI + + S+ E +V Sbjct: 284 LTRFKWGMVAELEKPTVELRKNILRNKIHRDGLQFPSEVIDYIAENVNESVRDLEGIVIS 343 Query: 219 MDNLALSRGMGITRSLAAEVLKETQQCD 246 + + I LA ++++ C+ Sbjct: 344 IMAHSTIYNKEIDLDLAQRIVRKVVHCE 371 >gi|255033818|ref|YP_003084439.1| chromosomal replication initiator protein DnaA [Dyadobacter fermentans DSM 18053] gi|254946574|gb|ACT91274.1| chromosomal replication initiator protein DnaA [Dyadobacter fermentans DSM 18053] Length = 480 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 48/202 (23%), Positives = 81/202 (40%), Gaps = 33/202 (16%) Query: 67 VILVGPSGSGKSCL--------ANIWSDK----SRSTRFSNIAKSLDSILIDTRKPV--L 112 +++ G G GK+ L N + +K S +F+N + ++SI +T + Sbjct: 182 LMMYGGVGLGKTHLVQAIGNYITNHYENKLVLYVSSEKFTN--QFINSIRNNTLQEFTDF 239 Query: 113 LEDIDLLDFNDTQL-----------FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161 +D+L +D Q FHI N +HQ ++MT+ P L SR Sbjct: 240 YMKVDVLAIDDVQFLSGKEKTQDTFFHIFNHLHQLGKQIIMTSDRPPRELQGLQDRLLSR 299 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK-LVDKMD 220 K + PD + +I K I ID + YI + ++ E +V M Sbjct: 300 FKWGLTADLQAPDFETRIAIIQKKIQSEGISIDYDVIEYIAHSVNSNVRELEGVIVSLMA 359 Query: 221 NLALSRGMGITRSLAAEVLKET 242 +L+R R++ E+ K T Sbjct: 360 QASLTR-----RNIDVELAKNT 376 >gi|229163826|ref|ZP_04291769.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus R309803] gi|228619646|gb|EEK76529.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus R309803] Length = 256 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 16/101 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V ++GPSGSGK+ L N+ S +++ ILID + V + D +L F L Sbjct: 37 VGIMGPSGSGKTTLLNVLSTIDTASK--------GEILIDGKDIVKMNDDELALFRRNHL 88 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 I + D T V + LP S++KA V Sbjct: 89 GFIFQDYNLLD--------TLTVQENIALPLALSKVKAKEV 121 >gi|213962527|ref|ZP_03390789.1| chromosomal replication initiator protein DnaA [Capnocytophaga sputigena Capno] gi|213954853|gb|EEB66173.1| chromosomal replication initiator protein DnaA [Capnocytophaga sputigena Capno] Length = 473 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 36/160 (22%), Positives = 69/160 (43%), Gaps = 14/160 (8%) Query: 56 IDSWPSWPSRVVILVGPSGSGKSCL-ANIWSDKSRST--RFSNIAKSLDSILIDTRKPVL 112 +D +P + V+ V + + A+ DK ++T F + + +D +++D Sbjct: 188 VDIKEKYPKKKVLYVSAEKFTQQFISASTAKDKDKNTLNDFIHFYQLIDVLIVD------ 241 Query: 113 LEDIDLLDFN-DTQ--LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 DI L TQ FHI N +HQ +++T+ PV L SR K + Sbjct: 242 --DIQFLSGKVKTQDAFFHIFNHLHQNGKQVILTSDKAPVDLFDIEQRLLSRFKWGLSAE 299 Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209 + PD + K++ F + I + + AY+ + + ++ Sbjct: 300 LQTPDYETRYKILENKFYNDGAEIGEDIIAYLAENIRTNV 339 >gi|19115118|ref|NP_594206.1| AAA family ATPase, unknown biological role [Schizosaccharomyces pombe 972h-] gi|74625010|sp|Q9P3U2|YKX4_SCHPO RecName: Full=Uncharacterized AAA domain-containing protein C328.04 gi|8894855|emb|CAB95999.1| AAA family ATPase, unknown biological role [Schizosaccharomyces pombe] Length = 741 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 19/40 (47%), Positives = 26/40 (65%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P+R ++L GP G+GK+ LA + +SRS FS A SL S Sbjct: 491 PARGMLLFGPPGTGKTMLARAVATESRSVFFSISASSLTS 530 >gi|301154665|emb|CBW14127.1| ATPase regulatory factor involved in DnaA inactivation [Haemophilus parainfluenzae T3T1] Length = 231 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 35/140 (25%), Positives = 67/140 (47%), Gaps = 6/140 (4%) Query: 105 IDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCS 160 ++ ++ V L+D+ + N + LF + N I +LL+ +A P + V LPDL S Sbjct: 91 LEQQELVCLDDLQAVIGNSEWEIALFDLFNCIKANGKTLLVVSAEQSPTALPVKLPDLAS 150 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFA-DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 RLK ++ +P D + ++K A R I + A +I R++R + ++ + ++ Sbjct: 151 RLKWGESYQL-IPLSDEQKLAVLKQNAHQRGIMLSDDTANFIFTRLDRDMATLKEALVQL 209 Query: 220 DNLALSRGMGITRSLAAEVL 239 D +L +T +L Sbjct: 210 DKASLQAKRNLTIPFVKSIL 229 >gi|256820765|ref|YP_003142044.1| chromosomal replication initiation protein [Capnocytophaga ochracea DSM 7271] gi|256582348|gb|ACU93483.1| chromosomal replication initiator protein DnaA [Capnocytophaga ochracea DSM 7271] Length = 473 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 36/160 (22%), Positives = 69/160 (43%), Gaps = 14/160 (8%) Query: 56 IDSWPSWPSRVVILVGPSGSGKSCL-ANIWSDKSRST--RFSNIAKSLDSILIDTRKPVL 112 +D +P + V+ V + + A+ DK ++T F + + +D +++D Sbjct: 188 VDIKEKYPKKKVLYVSAEKFTQQFISASTAKDKDKNTLNDFIHFYQLIDVLIVD------ 241 Query: 113 LEDIDLLDFN-DTQ--LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 DI L TQ FHI N +HQ +++T+ PV L SR K + Sbjct: 242 --DIQFLSGKVKTQDAFFHIFNHLHQNGKQVILTSDKAPVDLFDIEQRLLSRFKWGLSAE 299 Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209 + PD + K++ F + I + + AY+ + + ++ Sbjct: 300 LQTPDYETRYKILENKFYNDGAEIGEDIIAYLAENIRTNV 339 >gi|150019914|ref|YP_001305268.1| chromosomal replication initiator protein DnaA [Thermosipho melanesiensis BI429] gi|166215366|sp|A6LIY2|DNAA_THEM4 RecName: Full=Chromosomal replication initiator protein DnaA gi|149792435|gb|ABR29883.1| chromosomal replication initiator protein DnaA [Thermosipho melanesiensis BI429] Length = 437 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 21/78 (26%), Positives = 38/78 (48%) Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 T+LFH N+IH+ +++ + P + SR + +VKI P + L K+ Sbjct: 215 TELFHTFNTIHEAGKQIIICSDRTPQELKDFHSRMISRFQMGLLVKIEKPSSEDLFKIGK 274 Query: 184 KMFADRQIFIDKKLAAYI 201 K+ + + ID ++ YI Sbjct: 275 KISEMKNVEIDDEIIKYI 292 >gi|153808748|ref|ZP_01961416.1| hypothetical protein BACCAC_03047 [Bacteroides caccae ATCC 43185] gi|149128574|gb|EDM19792.1| hypothetical protein BACCAC_03047 [Bacteroides caccae ATCC 43185] Length = 470 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 23/130 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS----TRFSNIAKSL------DSILIDTRKPVL--LE 114 + L G SG GK+ LAN K + R ++ L DS+ +T + + Sbjct: 169 LFLYGASGVGKTHLANAIGTKIKEIYPEKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQ 228 Query: 115 DIDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 ID+L +D Q FHI N +HQ L++T+ PV L +R K Sbjct: 229 TIDVLIIDDIQEFAGVTKTQNNFFHIFNHLHQNGKQLILTSDRAPVLLQGIEERLLTRFK 288 Query: 164 AATVVKISLP 173 V ++ P Sbjct: 289 WGMVAELEKP 298 >gi|53794027|gb|AAU93604.1| cytoplasmic dynein heavy chain 2.1 [Leishmania mexicana] Length = 4241 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 9/84 (10%) Query: 22 KNKEEQLFFSFPRCLGISRDDLLVHSAI-----EQAVRLIDSW--PSWPS--RVVILVGP 72 + +++ + F +S DDL H + ++A+ ++ +W P+ P R ILVGP Sbjct: 2201 EERQDYVALEFVPAANLSIDDLYRHPMVSTVECQRALEVMRAWTKPTSPGVYRPFILVGP 2260 Query: 73 SGSGKSCLANIWSDKSRSTRFSNI 96 G GK+ L N + STR ++I Sbjct: 2261 EGCGKTMLLNNLFMSTTSTRVASI 2284 >gi|220904598|ref|YP_002479910.1| ABC transporter-like protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868897|gb|ACL49232.1| ABC transporter related [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 571 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 5/62 (8%) Query: 63 PSRVVILVGPSGSGKSCL----ANIWSDKSRSTRFSNI-AKSLDSILIDTRKPVLLEDID 117 P +V LVGPSGSGKS L A +W K R N+ + +D + ++L+D+ Sbjct: 357 PGSMVALVGPSGSGKSTLAALIARLWDVKEGVVRIGNVDVRDIDEPTLHRTVSMVLQDVF 416 Query: 118 LL 119 L Sbjct: 417 LF 418 >gi|322495227|emb|CBZ30531.1| putative dynein heavy chain [Leishmania mexicana MHOM/GT/2001/U1103] Length = 4241 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 9/84 (10%) Query: 22 KNKEEQLFFSFPRCLGISRDDLLVHSAI-----EQAVRLIDSW--PSWPS--RVVILVGP 72 + +++ + F +S DDL H + ++A+ ++ +W P+ P R ILVGP Sbjct: 2201 EERQDYVALEFVPAANLSIDDLYRHPMVSTVECQRALEVMRAWTKPTSPGVYRPFILVGP 2260 Query: 73 SGSGKSCLANIWSDKSRSTRFSNI 96 G GK+ L N + STR ++I Sbjct: 2261 EGCGKTMLLNNLFMSTTSTRVASI 2284 >gi|260174144|ref|ZP_05760556.1| chromosomal replication initiation protein [Bacteroides sp. D2] gi|315922409|ref|ZP_07918649.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313696284|gb|EFS33119.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 470 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 23/130 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS----TRFSNIAKSL------DSILIDTRKPVL--LE 114 + L G SG GK+ LAN K + R ++ L DS+ +T + + Sbjct: 169 LFLYGASGVGKTHLANAIGTKIKEIYPEKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQ 228 Query: 115 DIDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 ID+L +D Q FHI N +HQ L++T+ PV L +R K Sbjct: 229 TIDVLIIDDIQEFAGVTKTQNNFFHIFNHLHQNGKQLILTSDRAPVLLQGIEERLLTRFK 288 Query: 164 AATVVKISLP 173 V ++ P Sbjct: 289 WGMVAELEKP 298 >gi|53715109|ref|YP_101101.1| chromosomal replication initiation protein [Bacteroides fragilis YCH46] gi|60683067|ref|YP_213211.1| chromosomal replication initiation protein [Bacteroides fragilis NCTC 9343] gi|265766960|ref|ZP_06094789.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 2_1_16] gi|61212532|sp|Q64PL4|DNAA_BACFR RecName: Full=Chromosomal replication initiator protein DnaA gi|81313879|sp|Q5L9D0|DNAA_BACFN RecName: Full=Chromosomal replication initiator protein DnaA gi|52217974|dbj|BAD50567.1| chromosomal replication initiator protein DnaA [Bacteroides fragilis YCH46] gi|60494501|emb|CAH09298.1| putative chromosomal replication initiator protein [Bacteroides fragilis NCTC 9343] gi|263253337|gb|EEZ24813.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 2_1_16] gi|301164582|emb|CBW24141.1| putative chromosomal replication initiator protein [Bacteroides fragilis 638R] Length = 476 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 40/208 (19%), Positives = 81/208 (38%), Gaps = 33/208 (15%) Query: 67 VILVGPSGSGKSCLAN--------IWSDK--------------------SRSTRFSNIAK 98 + L G SG GK+ LAN ++ DK + + F N + Sbjct: 169 LFLHGASGVGKTHLANAIGTRIKELYPDKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQ 228 Query: 99 SLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158 ++D ++ID +++ + FHI N +HQ L++T+ PV L Sbjct: 229 TIDVLIIDD-----IQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVLLQGMEERL 283 Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218 +R K V ++ P + + ++ + ++ YI + + S+ E +V Sbjct: 284 LTRFKWGMVAELEKPTVELRKNILRNKIHRDGLQFPSEVIDYIAENVNESVRDLEGIVIS 343 Query: 219 MDNLALSRGMGITRSLAAEVLKETQQCD 246 + + I LA ++++ +C+ Sbjct: 344 IMAHSTIYNKEIDLDLAQRIVRKVVRCE 371 >gi|322707976|gb|EFY99553.1| AAA family ATPase [Metarhizium anisopliae ARSEF 23] Length = 809 Score = 37.0 bits (84), Expect = 2.6, Method: Composition-based stats. Identities = 19/40 (47%), Positives = 27/40 (67%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P+R ++L GP G+GK+ LA + +S+ST FS A SL S Sbjct: 553 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTS 592 >gi|289811495|ref|ZP_06542124.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 153 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 28/117 (23%), Positives = 60/117 (51%), Gaps = 3/117 (2%) Query: 126 LFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEKVIV 183 +F + N I + + LL+T P + LPDL SRL + K+ L D+D L+ + + Sbjct: 37 IFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQL 96 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + R + + + ++++R++R + +D++D+ +++ +T E+LK Sbjct: 97 RARL-RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDHASITAQRKLTIPFVKEILK 152 >gi|116179646|ref|XP_001219672.1| hypothetical protein CHGG_00451 [Chaetomium globosum CBS 148.51] gi|88184748|gb|EAQ92216.1| hypothetical protein CHGG_00451 [Chaetomium globosum CBS 148.51] Length = 834 Score = 37.0 bits (84), Expect = 2.6, Method: Composition-based stats. Identities = 19/40 (47%), Positives = 27/40 (67%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P+R ++L GP G+GK+ LA + +S+ST FS A SL S Sbjct: 582 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTS 621 >gi|226293403|gb|EEH48823.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18] Length = 854 Score = 37.0 bits (84), Expect = 2.6, Method: Composition-based stats. Identities = 19/40 (47%), Positives = 27/40 (67%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P+R ++L GP G+GK+ LA + +S+ST FS A SL S Sbjct: 598 PARGMLLFGPPGTGKTMLARAVATESQSTFFSVSASSLTS 637 >gi|18976440|ref|NP_577797.1| cobalt transport ATP-binding protein [Pyrococcus furiosus DSM 3638] gi|56748835|sp|Q8U4L3|Y068_PYRFU RecName: Full=Putative ABC transporter ATP-binding protein PF0068 gi|18891974|gb|AAL80192.1| cobalt transport ATP-binding protein [Pyrococcus furiosus DSM 3638] Length = 260 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 42/193 (21%), Positives = 81/193 (41%), Gaps = 41/193 (21%) Query: 61 SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120 S+ ++ +VGP+GSGK+ L K + ++ + VL++ I+ + Sbjct: 24 SFDEGILAVVGPNGSGKTTL----------------VKMFNGLIKPKKGDVLVDGINTKE 67 Query: 121 FNDTQLFHIINSIHQYDSSLLMTARTF------PVSWGVCLPDLCSRLKAATVVKISLPD 174 + QL I+ + Q ++ F P + G+ ++ R+K A Sbjct: 68 ASTAQLSRIVGYVFQNPDAMFFEETVFDEVAFGPRNLGLSEEEVKERVKWA--------- 118 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK----LVDKMDNLALSRGMGI 230 LE V +K F D+ F KL+ QR+ + + A ++D+ RG+G Sbjct: 119 ---LEAVGLKGFEDKNPF---KLSGGEKQRLAIACILAMNPKYLVLDEPTTGLDERGVGA 172 Query: 231 TRSLAAEVLKETQ 243 +++ E+ KE + Sbjct: 173 LKNIIEELRKEGK 185 >gi|225684013|gb|EEH22297.1| katanin p60 ATPase-containing subunit [Paracoccidioides brasiliensis Pb03] Length = 854 Score = 37.0 bits (84), Expect = 2.7, Method: Composition-based stats. Identities = 19/40 (47%), Positives = 27/40 (67%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P+R ++L GP G+GK+ LA + +S+ST FS A SL S Sbjct: 598 PARGMLLFGPPGTGKTMLARAVATESQSTFFSVSASSLTS 637 >gi|33151946|ref|NP_873299.1| DNA replication initiation factor [Haemophilus ducreyi 35000HP] gi|33148168|gb|AAP95688.1| conserved probable chromosomal replication initiator protein [Haemophilus ducreyi 35000HP] Length = 236 Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust. Identities = 25/104 (24%), Positives = 52/104 (50%) Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195 + + LL++A P + LPDL SRL V ++ DD ++ + + I + + Sbjct: 131 HKTLLLISANCSPHQLKIKLPDLKSRLTWGEVYQLYDLTDDQKIVILQRKAYQKGIELSE 190 Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 ++A ++++R++R L +DK+D +L +T E++ Sbjct: 191 EVANFLLKRLDRDLPVLLAELDKLDRASLQAKRKLTMPFVKEII 234 >gi|258568020|ref|XP_002584754.1| spastin [Uncinocarpus reesii 1704] gi|237906200|gb|EEP80601.1| spastin [Uncinocarpus reesii 1704] Length = 943 Score = 37.0 bits (84), Expect = 2.7, Method: Composition-based stats. Identities = 19/40 (47%), Positives = 27/40 (67%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P+R ++L GP G+GK+ LA + +S+ST FS A SL S Sbjct: 688 PTRGMLLFGPPGTGKTMLARAVATESKSTFFSISATSLTS 727 >gi|254457518|ref|ZP_05070946.1| chromosomal replication initiator protein DnaA [Campylobacterales bacterium GD 1] gi|207086310|gb|EDZ63594.1| chromosomal replication initiator protein DnaA [Campylobacterales bacterium GD 1] Length = 435 Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust. Identities = 43/228 (18%), Positives = 91/228 (39%), Gaps = 24/228 (10%) Query: 41 DDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCL----ANIWSDKSRSTRF 93 D+ +V + + A + S P V + + G G GK+ L N++ ++ +S + Sbjct: 107 DNFMVGGSNQFAYAAVKSVSESPGEVYNPLFIYGGVGLGKTHLMQSAGNVFQNQGKSVIY 166 Query: 94 SNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFHIINSIHQY 136 +++ + L+ + R +L++DI L + + FH ++ Sbjct: 167 TSVEQFLNDFIRHVRNKTMPSFQEKYRKCDVLLIDDIQFLSNKEGIQEEFFHTFEALKGS 226 Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196 +++TA P G L SR + V I P+ + +I K ++ + Sbjct: 227 GKQIILTADKHPKKIGGLEKRLQSRFEWGLVADIQPPELETKIAIIKKKCEINKVKLSND 286 Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 + YI +E ++ E ++ K+ + + I + VLK+ Q Sbjct: 287 IINYIATVIESNVREIEGILSKLHAYSQLMHIDIDLAFTKNVLKDQLQ 334 >gi|160885204|ref|ZP_02066207.1| hypothetical protein BACOVA_03202 [Bacteroides ovatus ATCC 8483] gi|237714833|ref|ZP_04545314.1| chromosomal replication initiator protein dnaA [Bacteroides sp. D1] gi|237720012|ref|ZP_04550493.1| chromosomal replication initiator protein dnaA [Bacteroides sp. 2_2_4] gi|262406895|ref|ZP_06083444.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 2_1_22] gi|293368855|ref|ZP_06615459.1| chromosomal replication initiator protein DnaA [Bacteroides ovatus SD CMC 3f] gi|294643068|ref|ZP_06720907.1| chromosomal replication initiator protein DnaA [Bacteroides ovatus SD CC 2a] gi|294807803|ref|ZP_06766593.1| chromosomal replication initiator protein DnaA [Bacteroides xylanisolvens SD CC 1b] gi|298479865|ref|ZP_06998065.1| ATPase involved in DNA replication initiation [Bacteroides sp. D22] gi|299147890|ref|ZP_07040953.1| ATPase involved in DNA replication initiation [Bacteroides sp. 3_1_23] gi|156109554|gb|EDO11299.1| hypothetical protein BACOVA_03202 [Bacteroides ovatus ATCC 8483] gi|229445158|gb|EEO50949.1| chromosomal replication initiator protein dnaA [Bacteroides sp. D1] gi|229450564|gb|EEO56355.1| chromosomal replication initiator protein dnaA [Bacteroides sp. 2_2_4] gi|262355598|gb|EEZ04689.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 2_1_22] gi|292636160|gb|EFF54648.1| chromosomal replication initiator protein DnaA [Bacteroides ovatus SD CMC 3f] gi|292641587|gb|EFF59766.1| chromosomal replication initiator protein DnaA [Bacteroides ovatus SD CC 2a] gi|294445000|gb|EFG13677.1| chromosomal replication initiator protein DnaA [Bacteroides xylanisolvens SD CC 1b] gi|295084766|emb|CBK66289.1| chromosomal replication initiator protein DnaA [Bacteroides xylanisolvens XB1A] gi|298274255|gb|EFI15816.1| ATPase involved in DNA replication initiation [Bacteroides sp. D22] gi|298514073|gb|EFI37959.1| ATPase involved in DNA replication initiation [Bacteroides sp. 3_1_23] Length = 470 Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 23/130 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS----TRFSNIAKSL------DSILIDTRKPVL--LE 114 + L G SG GK+ LAN K + R ++ L DS+ +T + + Sbjct: 169 LFLYGASGVGKTHLANAIGTKIKEIYPEKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQ 228 Query: 115 DIDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 ID+L +D Q FHI N +HQ L++T+ PV L +R K Sbjct: 229 TIDVLIIDDIQEFAGVTKTQNNFFHIFNHLHQNGKQLILTSDRAPVLLQGIEERLLTRFK 288 Query: 164 AATVVKISLP 173 V ++ P Sbjct: 289 WGMVAELEKP 298 >gi|268610504|ref|ZP_06144231.1| chromosomal replication initiation protein [Ruminococcus flavefaciens FD-1] Length = 457 Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust. Identities = 40/199 (20%), Positives = 82/199 (41%), Gaps = 24/199 (12%) Query: 67 VILVGPSGSGKSCLANIWSDKSR------------STRFS-------NIAKSLDSILIDT 107 + + GPSG GK+ L +++ R S F N ++D Sbjct: 152 LFIYGPSGMGKTHLITAIANEVRKNHPDFNIVYVTSEAFGGELINALNNTGNIDDFHAKY 211 Query: 108 RKP--VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 R +L++DI + + FH ++HQ +++T+ P L +R Sbjct: 212 RNADILLIDDIQFFSGKERMQEEFFHTFYTLHQEGRQIVITSDKPPKELLTLEERLRTRF 271 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 + + IS PD + +I + ++ + ++A ++ R++ ++ E V ++ L Sbjct: 272 EGGLIADISAPDYETRLAIINRKSELLELKMPSEVAEFMANRLKSNIRQLEGAVVRLKAL 331 Query: 223 ALSRGMGITRSLAAEVLKE 241 G IT S+A V+++ Sbjct: 332 NHFAGSPITISMAQSVIRD 350 >gi|255722928|ref|XP_002546398.1| hypothetical protein CTRG_05876 [Candida tropicalis MYA-3404] gi|240130915|gb|EER30477.1| hypothetical protein CTRG_05876 [Candida tropicalis MYA-3404] Length = 754 Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust. Identities = 18/38 (47%), Positives = 26/38 (68%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P+R ++L GP G+GK+ LA + +S+ST FS A SL Sbjct: 508 PTRGMLLFGPPGTGKTMLARAVATESKSTFFSVSAASL 545 >gi|170767200|ref|ZP_02901653.1| DnaA regulatory inactivator Hda [Escherichia albertii TW07627] gi|170123534|gb|EDS92465.1| DnaA regulatory inactivator Hda [Escherichia albertii TW07627] Length = 225 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 28/117 (23%), Positives = 59/117 (50%), Gaps = 3/117 (2%) Query: 126 LFHIINSI-HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEKVIV 183 +F + N I ++ LL+T P + LPDL SRL + K+ L D+D L+ + + Sbjct: 109 IFDLYNRILESGNTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQL 168 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + R + + + ++++R++R + +D++D +++ +T E+LK Sbjct: 169 RARL-RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 224 >gi|126664804|ref|ZP_01735788.1| putative transposase [Marinobacter sp. ELB17] gi|126664928|ref|ZP_01735911.1| putative transposase [Marinobacter sp. ELB17] gi|126665885|ref|ZP_01736866.1| putative transposase [Marinobacter sp. ELB17] gi|126667106|ref|ZP_01738081.1| putative transposase [Marinobacter sp. ELB17] gi|126667676|ref|ZP_01738644.1| putative transposase [Marinobacter sp. ELB17] gi|126668381|ref|ZP_01739339.1| putative transposase [Marinobacter sp. ELB17] gi|126668496|ref|ZP_01739451.1| putative transposase [Marinobacter sp. ELB17] gi|126668544|ref|ZP_01739499.1| putative transposase [Marinobacter sp. ELB17] gi|126668669|ref|ZP_01739620.1| putative transposase [Marinobacter sp. ELB17] gi|126669137|ref|ZP_01740065.1| putative transposase [Marinobacter sp. ELB17] gi|126626407|gb|EAZ97076.1| putative transposase [Marinobacter sp. ELB17] gi|126626847|gb|EAZ97493.1| putative transposase [Marinobacter sp. ELB17] gi|126627007|gb|EAZ97649.1| putative transposase [Marinobacter sp. ELB17] gi|126627055|gb|EAZ97697.1| putative transposase [Marinobacter sp. ELB17] gi|126627197|gb|EAZ97836.1| putative transposase [Marinobacter sp. ELB17] gi|126627779|gb|EAZ98408.1| putative transposase [Marinobacter sp. ELB17] gi|126628512|gb|EAZ99134.1| putative transposase [Marinobacter sp. ELB17] gi|126629819|gb|EBA00436.1| putative transposase [Marinobacter sp. ELB17] gi|126630298|gb|EBA00913.1| putative transposase [Marinobacter sp. ELB17] gi|126631130|gb|EBA01744.1| putative transposase [Marinobacter sp. ELB17] Length = 251 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 24/113 (21%) Query: 67 VILVGPSGSGKSCLANIWSDK-----SRSTRFSNIA---------KSLDSILIDTR---- 108 V+L+GPSG+GK+ +AN + R F IA + LD + TR Sbjct: 102 VLLIGPSGTGKTHIANALGHQLTEQGVRCKLFPAIALVQHLQQAKRDLDLMTAMTRLDKY 161 Query: 109 KPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVS-WGVCLPD 157 + V+++DI + D + LF I H+Y+S L+ P S W PD Sbjct: 162 RVVIIDDIGYVKKTDAETQVLFEFI--AHRYESGSLIVTANQPFSEWDQIFPD 212 >gi|78357910|ref|YP_389359.1| type I restriction-modification system, S subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220315|gb|ABB39664.1| type I restriction-modification system, S subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 448 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 2/92 (2%) Query: 121 FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 F + FH + Y +L++ P+ +PDL R+ + I PD F +K Sbjct: 294 FISEETFHALGCTEVYGGDVLVSRLNNPIGRACMVPDLGVRVVTSVDNVIFRPDSKFNKK 353 Query: 181 VIVKMFADRQIFID-KKLA-AYIVQRMERSLV 210 IV +F+ + F LA +QR+ R L+ Sbjct: 354 FIVYLFSSEEYFKHTSNLARGATMQRISRGLL 385 >gi|332877991|ref|ZP_08445721.1| replication initiator protein DnaA [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683953|gb|EGJ56820.1| replication initiator protein DnaA [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 468 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 37/202 (18%), Positives = 78/202 (38%), Gaps = 33/202 (16%) Query: 67 VILVGPSGSGKSCLANI-------------------------WSDKSRSTR---FSNIAK 98 + + G SG GK+ L N ++D R F N + Sbjct: 168 LFIYGASGVGKTHLVNAIGAKIKELHPTKRVLYVSAHLFQVQYTDSVRKNTVNDFINFYQ 227 Query: 99 SLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158 ++D ++ID +++ L FHI N +HQ L++T+ P + L Sbjct: 228 TIDVLIIDD-----VQEFASLTKTQNTFFHIFNHLHQNGRQLILTSDRPPTALQGMEERL 282 Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218 +R K + ++ P+ ++ + I +++ ++ + + S+ E +V+ Sbjct: 283 LTRFKWGLLAELEKPNQQLRHDILENKIRQDGLKIPEEVIDFVSENVNDSVRELEGIVNS 342 Query: 219 MDNLALSRGMGITRSLAAEVLK 240 + ++ I LA ++LK Sbjct: 343 LMAYSVVWNRDIDLPLAEQILK 364 >gi|27383099|ref|NP_774628.1| ATP-binding protein [Bradyrhizobium japonicum USDA 110] gi|27356273|dbj|BAC53253.1| bll7988 [Bradyrhizobium japonicum USDA 110] Length = 235 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 14/84 (16%) Query: 66 VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT- 124 VV+L+GPSGSGK+ L NI R T + +D L D LED +L + Sbjct: 37 VVVLLGPSGSGKTTLLNIMGGLDRPTSGRLFFRDID--LTD------LEDRELTKYRRDH 88 Query: 125 -----QLFHIINSIHQYDSSLLMT 143 Q ++++ S+ Y++ L+T Sbjct: 89 VGFVFQFYNLVPSLTAYENVALVT 112 >gi|299537005|ref|ZP_07050310.1| ABC transporter ATP-binding protein [Lysinibacillus fusiformis ZC1] gi|298727585|gb|EFI68155.1| ABC transporter ATP-binding protein [Lysinibacillus fusiformis ZC1] Length = 253 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 42/106 (39%), Gaps = 22/106 (20%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V ++GPSGSGK+ N S R T I I+ P L D DL F T+L Sbjct: 37 VAVMGPSGSGKTTFLNSVSTIDRPTA--------GDIFINNHNPYALNDEDLAKFRRTEL 88 Query: 127 ---FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 F N +H T V + LP L A+ +++ Sbjct: 89 GFVFQDFNLVH-----------TLTVKENILLPLTLDSLPASKMLQ 123 >gi|295664729|ref|XP_002792916.1| AAA family ATPase [Paracoccidioides brasiliensis Pb01] gi|226278437|gb|EEH34003.1| AAA family ATPase [Paracoccidioides brasiliensis Pb01] Length = 810 Score = 36.6 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 19/40 (47%), Positives = 27/40 (67%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P+R ++L GP G+GK+ LA + +S+ST FS A SL S Sbjct: 604 PARGMLLFGPPGTGKTMLARAVATESQSTFFSVSASSLTS 643 >gi|119025019|ref|YP_908864.1| chromosomal replication initiation protein [Bifidobacterium adolescentis ATCC 15703] gi|154486346|ref|ZP_02027753.1| hypothetical protein BIFADO_00155 [Bifidobacterium adolescentis L2-32] gi|118764603|dbj|BAF38782.1| chromosomal replication initiator protein DnaA [Bifidobacterium adolescentis ATCC 15703] gi|154084209|gb|EDN83254.1| hypothetical protein BIFADO_00155 [Bifidobacterium adolescentis L2-32] Length = 499 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 17/169 (10%) Query: 79 CLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQ 135 LA+ + F+ + +D +LID DI L D Q FH N++HQ Sbjct: 236 ALADTNQSSGQIKEFNRRYREVDVLLID--------DIQFLSGKDATLEQFFHTFNTLHQ 287 Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK--VIVKMFAD-RQIF 192 + +++ + P L SR ++ V + PD LE I++M A Sbjct: 288 ANKRIVIASDVPPKDLQGFNERLISRFESGLTVDVKPPD---LETRIAILRMIATMNGSN 344 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 I + I +R ++ E ++++ +A +T++LA + L++ Sbjct: 345 IPNDVFNLIAERFTENIRELEGALNRVTAMASLSNQPVTKALAEQTLQD 393 >gi|294782086|ref|ZP_06747412.1| ATP-binding protein (contains P-loop) [Fusobacterium sp. 1_1_41FAA] gi|294480727|gb|EFG28502.1| ATP-binding protein (contains P-loop) [Fusobacterium sp. 1_1_41FAA] Length = 290 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 2/70 (2%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 ++I+ G SG+GK+ NI D + T N+ L+ L+DT L ID+ F +T Sbjct: 5 HIIIVTGLSGAGKTTALNILEDMNYYT-IDNLPLGLEKSLLDTEIEKLAVGIDIRTFKNT 63 Query: 125 Q-LFHIINSI 133 + F IN I Sbjct: 64 KDFFKFINYI 73 >gi|295838628|ref|ZP_06825561.1| uridine kinase [Streptomyces sp. SPB74] gi|295827104|gb|EFG65242.1| uridine kinase [Streptomyces sp. SPB74] Length = 232 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 17/27 (62%), Positives = 20/27 (74%) Query: 55 LIDSWPSWPSRVVILVGPSGSGKSCLA 81 L+ P+ P RVV+L GPSGSGKS LA Sbjct: 8 LVSPHPAVPVRVVLLAGPSGSGKSSLA 34 >gi|154290380|ref|XP_001545786.1| AAA family ATPase [Botryotinia fuckeliana B05.10] gi|150847766|gb|EDN22959.1| AAA family ATPase [Botryotinia fuckeliana B05.10] Length = 820 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 19/43 (44%), Positives = 28/43 (65%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI 105 P+R ++L GP G+GK+ LA + +S+ST FS A SL S + Sbjct: 565 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTSKFL 607 >gi|46136671|ref|XP_390027.1| hypothetical protein FG09851.1 [Gibberella zeae PH-1] Length = 795 Score = 36.6 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 19/40 (47%), Positives = 27/40 (67%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P+R ++L GP G+GK+ LA + +S+ST FS A SL S Sbjct: 539 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTS 578 >gi|330995967|ref|ZP_08319861.1| replication initiator protein DnaA [Paraprevotella xylaniphila YIT 11841] gi|329573964|gb|EGG55542.1| replication initiator protein DnaA [Paraprevotella xylaniphila YIT 11841] Length = 468 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 37/202 (18%), Positives = 78/202 (38%), Gaps = 33/202 (16%) Query: 67 VILVGPSGSGKSCLANI-------------------------WSDKSRSTR---FSNIAK 98 + + G SG GK+ L N ++D R F N + Sbjct: 168 LFIYGASGVGKTHLVNAIGAKIKELHPTKRVLYVSAHLFQVQYTDSVRKNTVNDFINFYQ 227 Query: 99 SLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158 ++D ++ID +++ L FHI N +HQ L++T+ P + L Sbjct: 228 TIDVLIIDD-----VQEFASLTKTQNTFFHIFNHLHQNGRQLILTSDRPPTALQGMEERL 282 Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218 +R K + ++ P+ ++ + I +++ ++ + + S+ E +V+ Sbjct: 283 LTRFKWGLLAELEKPNQQLRHDILENKIRQDGLKIPEEVIDFVSENVNDSVRELEGIVNS 342 Query: 219 MDNLALSRGMGITRSLAAEVLK 240 + ++ I LA ++LK Sbjct: 343 LMAYSVVWNRDIDLPLAEQILK 364 >gi|189091796|ref|XP_001929731.1| hypothetical protein [Podospora anserina S mat+] gi|188219251|emb|CAP49231.1| unnamed protein product [Podospora anserina S mat+] Length = 830 Score = 36.6 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 19/40 (47%), Positives = 27/40 (67%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P+R ++L GP G+GK+ LA + +S+ST FS A SL S Sbjct: 582 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTS 621 >gi|23465223|ref|NP_695826.1| chromosomal replication initiation protein [Bifidobacterium longum NCC2705] gi|189440298|ref|YP_001955379.1| chromosomal replication initiation protein [Bifidobacterium longum DJO10A] gi|227547513|ref|ZP_03977562.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239622843|ref|ZP_04665874.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312133632|ref|YP_004000971.1| dnaa [Bifidobacterium longum subsp. longum BBMN68] gi|317482359|ref|ZP_07941379.1| chromosomal replication initiator protein DnaA [Bifidobacterium sp. 12_1_47BFAA] gi|322688192|ref|YP_004207926.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum subsp. infantis 157F] gi|322690194|ref|YP_004219764.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum subsp. longum JCM 1217] gi|38257643|sp|Q8G6K0|DNAA_BIFLO RecName: Full=Chromosomal replication initiator protein DnaA gi|226735779|sp|B3DP22|DNAA_BIFLD RecName: Full=Chromosomal replication initiator protein DnaA gi|23325851|gb|AAN24462.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum NCC2705] gi|189428733|gb|ACD98881.1| ATPase for DNA replication initiation [Bifidobacterium longum DJO10A] gi|227212028|gb|EEI79924.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239514840|gb|EEQ54707.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum subsp. infantis CCUG 52486] gi|311772890|gb|ADQ02378.1| DnaA [Bifidobacterium longum subsp. longum BBMN68] gi|316916239|gb|EFV37641.1| chromosomal replication initiator protein DnaA [Bifidobacterium sp. 12_1_47BFAA] gi|320455050|dbj|BAJ65672.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum subsp. longum JCM 1217] gi|320459528|dbj|BAJ70148.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum subsp. infantis 157F] Length = 500 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 17/169 (10%) Query: 79 CLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQ 135 L N + + F+ + +D +LID DI L + Q FH N++HQ Sbjct: 238 ALQNPNQSQGQIAEFNRRYRQVDVLLID--------DIQFLGGKEATLDQFFHTFNALHQ 289 Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK--VIVKMFADRQIF- 192 + +++ + P + L SR ++ V + PD LE I++M A Sbjct: 290 ANKRIVIASDVAPKNLKGFEARLISRFESGLTVDVKPPD---LETRIAILRMIASMNGSK 346 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 I + I +R ++ E + ++ +A +TR+LA + L++ Sbjct: 347 IPSDVLDLIAERFTENIRELEGALTRVTAVASLSNQPVTRALAEQTLQD 395 >gi|302916237|ref|XP_003051929.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256732868|gb|EEU46216.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 808 Score = 36.6 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 19/40 (47%), Positives = 27/40 (67%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P+R ++L GP G+GK+ LA + +S+ST FS A SL S Sbjct: 552 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTS 591 >gi|305663873|ref|YP_003860161.1| AAA ATPase central domain protein [Ignisphaera aggregans DSM 17230] gi|304378442|gb|ADM28281.1| AAA ATPase central domain protein [Ignisphaera aggregans DSM 17230] Length = 475 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 44/195 (22%), Positives = 81/195 (41%), Gaps = 32/195 (16%) Query: 62 WPSRVVILVGPSGSGKSCLAN------------IWSDKSRSTRFSNIAKSLDSILIDTRK 109 + R ++L+GP G GKS A + RS + K+L++I +K Sbjct: 241 YAPRGILLIGPPGVGKSVTAEAIAQALTKGIVRLTPSTYRSMWYGMTEKTLNNIFASLKK 300 Query: 110 P----VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFP----VSWGVCLPDLCSR 161 VL++D D L Q F+ I+ + + ++ + P V +P++ + Sbjct: 301 RKDIVVLIDDADFL----VQRFNAIHEAYIAEVNIWLNILQDPLRPLVIMTTNVPEIIDQ 356 Query: 162 L-----KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216 + V+ + PD +K+I ++ I I+ ++ IVQR F + Sbjct: 357 ALIRPGRLDVVIFMGYPDKYMRKKIIKRICESYNITINDQIIEEIVQRTRW---FNAAEL 413 Query: 217 DKMDNLALSRGMGIT 231 D + +A S+G GI Sbjct: 414 DSLIRMAASKGHGIV 428 >gi|228942013|ref|ZP_04104556.1| Efflux ABC transporter, ATP-binding protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228817682|gb|EEM63764.1| Efflux ABC transporter, ATP-binding protein [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 139 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 16/101 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V ++GPSGSGK+ L N+ S +T ILID + V + D L F L Sbjct: 42 VGIMGPSGSGKTTLLNVLSTIDNATN--------GEILIDGKDIVKMNDDKLALFRRDHL 93 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 I + D T V + LP S++KA+ + Sbjct: 94 GFIFQDYNLLD--------TLTVKENIALPLALSKVKASEI 126 >gi|332709094|ref|ZP_08429063.1| chromosomal replication initiator protein DnaA [Lyngbya majuscula 3L] gi|332352145|gb|EGJ31716.1| chromosomal replication initiator protein DnaA [Lyngbya majuscula 3L] Length = 460 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 3/99 (3%) Query: 107 TRKPVLLEDIDLLD---FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 T + +L++DI ++ + + FH N++H+ +++ + P LCSR Sbjct: 215 TAEVLLVDDIQFIEGKEYTQEEFFHTFNTLHEAGKQIVLASDRPPNQINSLEERLCSRFS 274 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 + I PD + ++ K D I + + YI Sbjct: 275 MGLIADIQPPDLETRMAILQKKAEDENIRLPHDVVEYIA 313 >gi|302519442|ref|ZP_07271784.1| ATP-binding protein [Streptomyces sp. SPB78] gi|333026726|ref|ZP_08454790.1| putative ATP-binding protein [Streptomyces sp. Tu6071] gi|302428337|gb|EFL00153.1| ATP-binding protein [Streptomyces sp. SPB78] gi|332746578|gb|EGJ77019.1| putative ATP-binding protein [Streptomyces sp. Tu6071] Length = 232 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 17/27 (62%), Positives = 20/27 (74%) Query: 55 LIDSWPSWPSRVVILVGPSGSGKSCLA 81 L+ P+ P RVV+L GPSGSGKS LA Sbjct: 8 LVSPHPAVPVRVVLLAGPSGSGKSSLA 34 >gi|27803008|emb|CAD60711.1| unnamed protein product [Podospora anserina] Length = 820 Score = 36.6 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 19/40 (47%), Positives = 27/40 (67%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P+R ++L GP G+GK+ LA + +S+ST FS A SL S Sbjct: 572 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTS 611 >gi|127512766|ref|YP_001093963.1| DNA replication initiation factor [Shewanella loihica PV-4] gi|126638061|gb|ABO23704.1| regulatory inactivation of DnaA Hda protein [Shewanella loihica PV-4] Length = 236 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 37/190 (19%), Positives = 87/190 (45%), Gaps = 13/190 (6%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFS------NIAKSLDSILIDTRKP---VLLE 114 ++ V L GP +G++ L + ++ S I S+ + L++ + V ++ Sbjct: 46 NKAVYLWGPVKAGRTHLMHATCARANELNRSSFYLPLGIHASISTELLEGLEQLDLVCID 105 Query: 115 DIDLLDFN---DTQLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 D+D + + + LF + N + ++ +L+++A G LPDL SR++ ++ Sbjct: 106 DVDAIAGHPLWEEALFDLYNRVAEHKRCALVVSASATASDAGFALPDLVSRMQWGLTYQL 165 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 D+ + + A R + + + + +++ R+ R L ++D++D +L + Sbjct: 166 QPMADEEKLAALQRRAAMRGLQLPEDVGRFLLNRLARDLRTLFDVLDRLDKASLVHQRKL 225 Query: 231 TRSLAAEVLK 240 T E+L+ Sbjct: 226 TIPFVKEMLR 235 >gi|303311035|ref|XP_003065529.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta SOWgp] gi|240105191|gb|EER23384.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta SOWgp] gi|320039331|gb|EFW21265.1| vacuolar sorting protein 4b [Coccidioides posadasii str. Silveira] Length = 772 Score = 36.6 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 19/40 (47%), Positives = 27/40 (67%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P+R ++L GP G+GK+ LA + +S+ST FS A SL S Sbjct: 517 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISATSLTS 556 >gi|186477238|ref|YP_001858708.1| DnaA regulatory inactivator Hda [Burkholderia phymatum STM815] gi|184193697|gb|ACC71662.1| DnaA regulatory inactivator Hda [Burkholderia phymatum STM815] Length = 257 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 38/176 (21%), Positives = 72/176 (40%), Gaps = 8/176 (4%) Query: 65 RVVILVGPSGSGKSCL--ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID----L 118 R + G +GSG++ L A + R++ SL + D V L +D L Sbjct: 47 RTFYVWGETGSGRTHLLEALVHEAPPGHARYAGPQSSLAAFTFD--PAVTLYAVDDCDRL 104 Query: 119 LDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178 LF+++N + + +S L+ A DL +R+ V ++ D+ Sbjct: 105 SGAQQIALFNLVNEVRAHPTSALVVAGNAAPMGLEVREDLRTRMGWGLVFHVAPLADEGK 164 Query: 179 EKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234 V+ + +R I + + AY++ R + L+D +D +L + +T L Sbjct: 165 AAVLKRAARERGINLADDVPAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPL 220 >gi|262068096|ref|ZP_06027708.1| ATP-binding protein [Fusobacterium periodonticum ATCC 33693] gi|291378182|gb|EFE85700.1| ATP-binding protein [Fusobacterium periodonticum ATCC 33693] Length = 290 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 2/72 (2%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 ++I+ G SG+GK+ NI D + T N+ L+ L+DT L ID+ F +T Sbjct: 5 HIIIVTGLSGAGKTTALNILEDMNYYT-IDNLPLGLEKSLLDTEIEKLAVGIDIRTFKNT 63 Query: 125 Q-LFHIINSIHQ 135 + F IN I + Sbjct: 64 KDFFKFINFIKE 75 >gi|152971350|ref|YP_001336459.1| DNA replication initiation factor [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206580464|ref|YP_002237176.1| DnaA regulatory inactivator Hda [Klebsiella pneumoniae 342] gi|238895946|ref|YP_002920682.1| DNA replication initiation factor [Klebsiella pneumoniae NTUH-K2044] gi|262042106|ref|ZP_06015281.1| DnaA regulatory inactivator Hda [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288934116|ref|YP_003438175.1| DnaA regulatory inactivator Hda [Klebsiella variicola At-22] gi|290508321|ref|ZP_06547692.1| DnaA regulatory inactivator Hda [Klebsiella sp. 1_1_55] gi|269969359|sp|B5XNQ6|HDA_KLEP3 RecName: Full=DnaA-homolog protein hda gi|269969360|sp|A6TCA8|HDA_KLEP7 RecName: Full=DnaA-homolog protein hda gi|150956199|gb|ABR78229.1| DNA replication initiation factor [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206569522|gb|ACI11298.1| DnaA regulatory inactivator Hda [Klebsiella pneumoniae 342] gi|238548264|dbj|BAH64615.1| DNA replication initiation factor [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259040536|gb|EEW41632.1| DnaA regulatory inactivator Hda [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288888845|gb|ADC57163.1| DnaA regulatory inactivator Hda [Klebsiella variicola At-22] gi|289777715|gb|EFD85712.1| DnaA regulatory inactivator Hda [Klebsiella sp. 1_1_55] Length = 225 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 28/120 (23%), Positives = 62/120 (51%), Gaps = 3/120 (2%) Query: 123 DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180 + +F++ N I + + LL+T P + LPDL SRL + K+ L D+D L+ Sbjct: 106 EMAIFNLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQA 165 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + ++ R + + + ++++R++R + +D++D+ +++ +T E+LK Sbjct: 166 LQLRARL-RGFEMPEDVCRFLLKRLDREMRSLFMTLDQLDHASITAQRKLTIPFVKEILK 224 >gi|332141572|ref|YP_004427310.1| Chromosomal replication initiator, DnaA like protein to DnaA protein Hda [Alteromonas macleodii str. 'Deep ecotype'] gi|327551594|gb|AEA98312.1| Chromosomal replication initiator, DnaA like protein to DnaA protein Hda [Alteromonas macleodii str. 'Deep ecotype'] Length = 245 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 41/168 (24%), Positives = 77/168 (45%), Gaps = 13/168 (7%) Query: 66 VVILVGPSGSGKSCL----ANIWSDKSRSTRFSNI----AKSLDSI-LIDTRKPVLLEDI 116 +V L+G S GKS L + + KS S + N+ A SLD ++ + L++I Sbjct: 56 LVTLLGNSAIGKSHLLFATCHQLAGKSVSHLYLNLNDYQAWSLDIFEGLENLSLIALDNI 115 Query: 117 DLLDFN---DTQLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISL 172 + N + LF + N + + +L++ T+ P + LPDL SRL + ++ Sbjct: 116 HAIAGNVQWEEALFDLFNRVIETKRALIICTSHLGPSNPAFTLPDLRSRLAWGVIYHVNQ 175 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 DD E+ + +R + + + +++ ER L L+ ++D Sbjct: 176 LDDGGREEAVRLRAEERGLTLSNQALQFLLHHSERDLKSLMSLLARLD 223 >gi|313902784|ref|ZP_07836181.1| chromosomal replication initiator protein DnaA [Thermaerobacter subterraneus DSM 13965] gi|313466904|gb|EFR62421.1| chromosomal replication initiator protein DnaA [Thermaerobacter subterraneus DSM 13965] Length = 460 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 33/157 (21%), Positives = 71/157 (45%), Gaps = 11/157 (7%) Query: 88 SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTA 144 ++ F N +++D +L+D DI L ++ + FH N++H+ + +++++ Sbjct: 208 GKTLEFRNRYRNVDVLLVD--------DIQFLAGKESTQEEFFHTFNALHEANRQIVISS 259 Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 P L SR + + I PD + ++ K ++ + + A+I +R Sbjct: 260 DRPPKEIPTLEERLRSRFEWGLISDIQPPDFETRVAILRKKAQLEKLRVPDDVIAFIAER 319 Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++ ++ E + ++ A I LAAEVLK+ Sbjct: 320 IDTNIRELEGALIRLVAFASLTNHEIDLDLAAEVLKD 356 >gi|283786112|ref|YP_003365977.1| DnaA-homolog protein [Citrobacter rodentium ICC168] gi|282949566|emb|CBG89184.1| DnaA-homolog protein [Citrobacter rodentium ICC168] Length = 248 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 28/120 (23%), Positives = 61/120 (50%), Gaps = 3/120 (2%) Query: 123 DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180 + +F + N I + + LL+T P + LPDL SRL + K+ L D+D L+ Sbjct: 129 EMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQA 188 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + ++ R + + + ++++R++R + +D++D+ +++ +T E+LK Sbjct: 189 LQLRARL-RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDHASITAQRKLTIPFVKEILK 247 >gi|160872450|ref|ZP_02062582.1| DnaA regulatory inactivator Hda [Rickettsiella grylli] gi|159121249|gb|EDP46587.1| DnaA regulatory inactivator Hda [Rickettsiella grylli] Length = 231 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 13/113 (11%) Query: 71 GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL--LEDIDLLDFNDTQ--- 125 G G+G + L ++ FS L ++ + +L LE +D++ +D + Sbjct: 48 GHPGAGCTHLLQACCHTAQQYGFSVAYLPLSTLKKNNSSEILRGLESVDMVCIDDLESVV 107 Query: 126 --------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 LFH N + + LL+ A+ P LPDL SRL + + ++ Sbjct: 108 NESSWEESLFHFYNRLQEQSRYLLIAAKHNPHQLNFSLPDLISRLSSGILFQV 160 >gi|319940693|ref|ZP_08015035.1| chromosomal replication initiator protein dnaA [Sutterella wadsworthensis 3_1_45B] gi|319805844|gb|EFW02611.1| chromosomal replication initiator protein dnaA [Sutterella wadsworthensis 3_1_45B] Length = 454 Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust. Identities = 35/153 (22%), Positives = 66/153 (43%), Gaps = 8/153 (5%) Query: 92 RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSW 151 +F +SLD +LID ++ + + Q F ++ ++ L++T+ T+ Sbjct: 205 KFDERYRSLDLLLIDD-----VQSLSGAKGSQGQFFRAFEALVPHNKQLVITSDTYTRGL 259 Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---RS 208 P L SRL V I P+ + +++ + + ++AAYI +R++ R Sbjct: 260 KDIEPRLISRLSQGLSVAIEPPEFEMRTAILLNKAKTMGVDLPDEVAAYIAKRLKSNVRE 319 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 L A + V + IT +A VL+E Sbjct: 320 LEGALQQVVAYQQFQATSSREITIDIAKRVLRE 352 >gi|296453188|ref|YP_003660331.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum subsp. longum JDM301] gi|296182619|gb|ADG99500.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum subsp. longum JDM301] Length = 500 Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust. Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 17/169 (10%) Query: 79 CLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQ 135 L N + + F+ + +D +LID DI L + Q FH N++HQ Sbjct: 238 ALQNPNQSQGQIAEFNRRYRQVDVLLID--------DIQFLGGKEATLDQFFHTFNALHQ 289 Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK--VIVKMFADRQIF- 192 + +++ + P + L SR ++ V + PD LE I++M A Sbjct: 290 ANKRIVIASDVAPKNLKGFEARLISRFESGLTVDVKPPD---LETRIAILRMIASMNGSK 346 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 I + I +R ++ E + ++ +A +TR+LA + L++ Sbjct: 347 IPSDVLDLIAERFTENIRELEGALTRVTAVASLSNQPVTRALAEQTLQD 395 >gi|269217240|ref|ZP_06161094.1| macrolide export ATP-binding/permease protein MacB [Slackia exigua ATCC 700122] gi|269129377|gb|EEZ60462.1| macrolide export ATP-binding/permease protein MacB [Slackia exigua ATCC 700122] Length = 264 Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust. Identities = 40/174 (22%), Positives = 69/174 (39%), Gaps = 15/174 (8%) Query: 8 YSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVV 67 +S P + D P+N EQ+ + + + A++ + S + Sbjct: 4 FSQTAPVARSGDGPRNGREQIVLDVRNVHRVYE----MKAGFTHALKGV-SLTVSKGEFL 58 Query: 68 ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLF 127 ++GPSGSGKS L N R T S + LD +D D L + T+L Sbjct: 59 CIMGPSGSGKSTLMNTLGCLDRPTSGSYFLEGLDVSKLD--------DDGLAEIRSTRLG 110 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK-ISLPDDDFLEK 180 + S + + ++ P+ + C P L+A + +SLP++ F K Sbjct: 111 FVFQSFNLLPRATVLRNVMLPLIYSDC-PVSERTLRAVKALNAVSLPEEYFDHK 163 >gi|261203737|ref|XP_002629082.1| vacuolar sorting protein 4b [Ajellomyces dermatitidis SLH14081] gi|239586867|gb|EEQ69510.1| vacuolar sorting protein 4b [Ajellomyces dermatitidis SLH14081] Length = 812 Score = 36.6 bits (83), Expect = 3.4, Method: Composition-based stats. Identities = 19/40 (47%), Positives = 26/40 (65%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P+R ++L GP G+GK+ LA + +S ST FS A SL S Sbjct: 583 PARGMLLFGPPGTGKTMLARAVATESHSTFFSVSASSLTS 622 >gi|213690929|ref|YP_002321515.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum subsp. infantis ATCC 15697] gi|254777888|sp|B7GSF9|DNAA_BIFLS RecName: Full=Chromosomal replication initiator protein DnaA gi|213522390|gb|ACJ51137.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum subsp. infantis ATCC 15697] gi|291517733|emb|CBK71349.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum subsp. longum F8] gi|320456975|dbj|BAJ67596.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 500 Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust. Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 17/169 (10%) Query: 79 CLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQ 135 L N + + F+ + +D +LID DI L + Q FH N++HQ Sbjct: 238 ALQNPNQSQGQIAEFNRRYRQVDVLLID--------DIQFLGGKEATLDQFFHTFNALHQ 289 Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK--VIVKMFADRQIF- 192 + +++ + P + L SR ++ V + PD LE I++M A Sbjct: 290 ANKRIVIASDVAPKNLKGFEARLISRFESGLTVDVKPPD---LETRIAILRMIASMNGSK 346 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 I + I +R ++ E + ++ +A +TR+LA + L++ Sbjct: 347 IPSDVLDLIAERFTENIRELEGALTRVTAVASLSNQPVTRALAEQTLQD 395 >gi|237732473|ref|ZP_04562954.1| DNA replication initiation factor [Citrobacter sp. 30_2] gi|283832129|ref|ZP_06351870.1| DnaA regulatory inactivator Hda [Citrobacter youngae ATCC 29220] gi|226908012|gb|EEH93930.1| DNA replication initiation factor [Citrobacter sp. 30_2] gi|291071759|gb|EFE09868.1| DnaA regulatory inactivator Hda [Citrobacter youngae ATCC 29220] Length = 241 Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust. Identities = 28/120 (23%), Positives = 61/120 (50%), Gaps = 3/120 (2%) Query: 123 DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180 + +F + N I + + LL+T P + LPDL SRL + K+ L D+D L+ Sbjct: 122 EMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQA 181 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + ++ R + + + ++++R++R + +D++D+ +++ +T E+LK Sbjct: 182 LQLRARL-RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDHASITAQRKLTIPFVKEILK 240 >gi|161502351|ref|YP_001569463.1| DNA replication initiation factor [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|189042483|sp|A9MHP3|HDA_SALAR RecName: Full=DnaA-homolog protein hda gi|160863698|gb|ABX20321.1| hypothetical protein SARI_00384 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 241 Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust. Identities = 28/120 (23%), Positives = 61/120 (50%), Gaps = 3/120 (2%) Query: 123 DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180 + +F + N I + + LL+T P + LPDL SRL + K+ L D+D L+ Sbjct: 122 EMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQA 181 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + ++ R + + + ++++R++R + +D++D+ +++ +T E+LK Sbjct: 182 LQLRARL-RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDHASITAQRKLTIPFVKEILK 240 >gi|16761414|ref|NP_457031.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16765816|ref|NP_461431.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29140889|ref|NP_804231.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62181063|ref|YP_217480.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|167991801|ref|ZP_02572900.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168232045|ref|ZP_02657103.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168243269|ref|ZP_02668201.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261467|ref|ZP_02683440.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168466758|ref|ZP_02700612.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168817751|ref|ZP_02829751.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194446139|ref|YP_002041757.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194449619|ref|YP_002046559.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194472246|ref|ZP_03078230.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194735099|ref|YP_002115562.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197250088|ref|YP_002147449.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197263709|ref|ZP_03163783.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198242062|ref|YP_002216565.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200388824|ref|ZP_03215436.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204929434|ref|ZP_03220508.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205353601|ref|YP_002227402.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857909|ref|YP_002244560.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213160889|ref|ZP_03346599.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425351|ref|ZP_03358101.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213582544|ref|ZP_03364370.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213616332|ref|ZP_03372158.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213647175|ref|ZP_03377228.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213855522|ref|ZP_03383762.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224582970|ref|YP_002636768.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238913635|ref|ZP_04657472.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289829340|ref|ZP_06546952.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|57012732|sp|Q7CQ21|HDA_SALTY RecName: Full=DnaA-homolog protein hda gi|57012734|sp|Q8XEQ0|HDA_SALTI RecName: Full=DnaA-homolog protein hda gi|75481740|sp|Q57LL3|HDA_SALCH RecName: Full=DnaA-homolog protein hda gi|226740573|sp|B5F171|HDA_SALA4 RecName: Full=DnaA-homolog protein hda gi|226740574|sp|B5FQI8|HDA_SALDC RecName: Full=DnaA-homolog protein hda gi|226740575|sp|B5R558|HDA_SALEP RecName: Full=DnaA-homolog protein hda gi|226740576|sp|B5RCW8|HDA_SALG2 RecName: Full=DnaA-homolog protein hda gi|226740577|sp|B4TD71|HDA_SALHS RecName: Full=DnaA-homolog protein hda gi|226740578|sp|B4T0M5|HDA_SALNS RecName: Full=DnaA-homolog protein hda gi|226740580|sp|B4TR72|HDA_SALSV RecName: Full=DnaA-homolog protein hda gi|254800192|sp|C0PYR0|HDA_SALPC RecName: Full=DnaA-homolog protein hda gi|269969427|sp|A9N2Y3|HDA_SALPB RecName: Full=DnaA-homolog protein hda gi|25356046|pir||AF0818 conserved hypothetical protein STY2737 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16421038|gb|AAL21390.1| putative ATPase involved in DNA replication initiation [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16503714|emb|CAD02698.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29136514|gb|AAO68080.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62128696|gb|AAX66399.1| putative ATPase involved in DNA replication initiation [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194404802|gb|ACF65024.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407923|gb|ACF68142.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194458610|gb|EDX47449.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194710601|gb|ACF89822.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195630731|gb|EDX49323.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197213791|gb|ACH51188.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197241964|gb|EDY24584.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197936578|gb|ACH73911.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605922|gb|EDZ04467.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204321153|gb|EDZ06353.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205273382|emb|CAR38354.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205329842|gb|EDZ16606.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205333601|gb|EDZ20365.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205337580|gb|EDZ24344.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205344978|gb|EDZ31742.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349619|gb|EDZ36250.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709712|emb|CAR34062.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224467497|gb|ACN45327.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261247694|emb|CBG25521.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994607|gb|ACY89492.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159048|emb|CBW18561.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913484|dbj|BAJ37458.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320086990|emb|CBY96760.1| Chromosomal replication initiator protein dnaA [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322613765|gb|EFY10704.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619492|gb|EFY16368.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624997|gb|EFY21826.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629560|gb|EFY26336.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634010|gb|EFY30747.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635552|gb|EFY32263.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639900|gb|EFY36576.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644394|gb|EFY40935.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649152|gb|EFY45592.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655242|gb|EFY51551.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658289|gb|EFY54555.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664289|gb|EFY60486.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669457|gb|EFY65606.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673184|gb|EFY69290.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676575|gb|EFY72643.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683326|gb|EFY79340.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685788|gb|EFY81781.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322715546|gb|EFZ07117.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323130826|gb|ADX18256.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323192535|gb|EFZ77764.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199580|gb|EFZ84671.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204644|gb|EFZ89642.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208092|gb|EFZ93037.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210185|gb|EFZ95086.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217051|gb|EGA01773.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220610|gb|EGA05059.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225470|gb|EGA09701.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229260|gb|EGA13384.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235425|gb|EGA19509.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237389|gb|EGA21452.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245144|gb|EGA29145.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248847|gb|EGA32773.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253134|gb|EGA36966.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258704|gb|EGA42365.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260609|gb|EGA44219.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266385|gb|EGA49873.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269784|gb|EGA53234.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326624320|gb|EGE30665.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628698|gb|EGE35041.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332989424|gb|AEF08407.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 241 Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust. Identities = 28/120 (23%), Positives = 61/120 (50%), Gaps = 3/120 (2%) Query: 123 DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180 + +F + N I + + LL+T P + LPDL SRL + K+ L D+D L+ Sbjct: 122 EMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQA 181 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + ++ R + + + ++++R++R + +D++D+ +++ +T E+LK Sbjct: 182 LQLRARL-RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDHASITAQRKLTIPFVKEILK 240 >gi|229087367|ref|ZP_04219507.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus Rock3-44] gi|228695935|gb|EEL48780.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus Rock3-44] Length = 268 Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 16/101 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V ++GPSGSGK+ L N+ S +T ILID + V + D L F L Sbjct: 49 VGIMGPSGSGKTTLLNVLSTIDNATN--------GEILIDGKDIVKMNDDKLALFRRDHL 100 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 I + D T V + LP S++KA+ + Sbjct: 101 GFIFQDYNLLD--------TLTVKENIALPLALSKVKASEI 133 >gi|229544246|ref|ZP_04433305.1| ABC transporter related [Bacillus coagulans 36D1] gi|229325385|gb|EEN91061.1| ABC transporter related [Bacillus coagulans 36D1] Length = 252 Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 16/88 (18%) Query: 69 LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFH 128 ++GPSGSGK+ L N+ S R +R SI I+ + ++D L +F L Sbjct: 37 IMGPSGSGKTTLLNVLSSIDRPSR--------GSIEIEGKALTKMKDKQLAEFRKRHLGF 88 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLP 156 I H D T V + LP Sbjct: 89 IFQEYHLLD--------TLTVKENILLP 108 >gi|313672132|ref|YP_004050243.1| lipid a abc exporter, fused atpase and inner membrane subunits msba [Calditerrivibrio nitroreducens DSM 19672] gi|312938888|gb|ADR18080.1| lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA [Calditerrivibrio nitroreducens DSM 19672] Length = 573 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 15/76 (19%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL---------DSILIDTRKPVLL 113 P V LVGPSGSGK+ +AN+ RF ++++ D L R + + Sbjct: 360 PGETVALVGPSGSGKTTIANLLP------RFYDVSEGAIKIGGIDIRDFTLRSLRGNIAM 413 Query: 114 EDIDLLDFNDTQLFHI 129 D+ FND+ +++I Sbjct: 414 VSQDIFLFNDSIIYNI 429 >gi|289769507|ref|ZP_06528885.1| ATP-binding protein [Streptomyces lividans TK24] gi|289699706|gb|EFD67135.1| ATP-binding protein [Streptomyces lividans TK24] Length = 234 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 17/26 (65%), Positives = 20/26 (76%) Query: 56 IDSWPSWPSRVVILVGPSGSGKSCLA 81 + S P P+RVV+L GPSGSGKS LA Sbjct: 24 VSSHPPIPTRVVLLCGPSGSGKSLLA 49 >gi|169826399|ref|YP_001696557.1| ABC transporter ATP-binding protein [Lysinibacillus sphaericus C3-41] gi|168990887|gb|ACA38427.1| ABC transporter ATP-binding protein [Lysinibacillus sphaericus C3-41] Length = 246 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 42/102 (41%), Gaps = 22/102 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V ++GPSGSGK+ N S R T I+I+ R P +L D +L F ++L Sbjct: 30 VAVMGPSGSGKTTFLNSVSTIDRPTA--------GDIVINNRNPYVLNDEELAKFRRSEL 81 Query: 127 ---FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 F N +H T V + LP L +A Sbjct: 82 GFVFQDFNLVH-----------TLTVKENILLPLTLDSLPSA 112 >gi|254414409|ref|ZP_05028175.1| chromosomal replication initiator protein DnaA [Microcoleus chthonoplastes PCC 7420] gi|196178639|gb|EDX73637.1| chromosomal replication initiator protein DnaA [Microcoleus chthonoplastes PCC 7420] Length = 461 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 28/151 (18%), Positives = 61/151 (40%), Gaps = 7/151 (4%) Query: 59 WPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL 118 W + P+ + V +A I D +S F ++ + +LID ++ I+ Sbjct: 178 WENSPNSKIFYVSTEHFTNDLIAAIRKDSMQS--FREHYRAAEVLLIDD-----IQFIEG 230 Query: 119 LDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178 ++ + FH N++H+ +++ + P LCSR + I PD + Sbjct: 231 KEYTQEEFFHTFNTLHEAGKQIVLASDRPPHQISRLQERLCSRFSMGLIADIQPPDLETR 290 Query: 179 EKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209 ++ K I + + + YI + + ++ Sbjct: 291 MAILQKKAEYENIRLPRSVVEYIATQYKSNI 321 >gi|228974944|ref|ZP_04135505.1| Efflux ABC transporter, ATP-binding protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228784797|gb|EEM32815.1| Efflux ABC transporter, ATP-binding protein [Bacillus thuringiensis serovar thuringiensis str. T01001] Length = 134 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 16/101 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V ++GPSGSGK+ L N+ S +T ILID + V + D L F L Sbjct: 37 VGIMGPSGSGKTTLLNVLSTIDNATN--------GEILIDGKDIVKMNDDKLALFRRDHL 88 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 I + D T V + LP S++KA+ + Sbjct: 89 GFIFQDYNLLD--------TLTVKENIALPLALSKVKASEI 121 >gi|91774357|ref|YP_544113.1| chromosomal replication initiator protein DnaA [Methylobacillus flagellatus KT] gi|123380248|sp|Q1GXK1|DNAA_METFK RecName: Full=Chromosomal replication initiator protein DnaA gi|91708344|gb|ABE48272.1| chromosomal replication initiator protein DnaA [Methylobacillus flagellatus KT] Length = 470 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 34/152 (22%), Positives = 66/152 (43%), Gaps = 11/152 (7%) Query: 93 FSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPV 149 F SLD +LID DI + F+ NS+ + +++T T+P Sbjct: 225 FKRQYHSLDLLLID--------DIQFFAKKSRTQEEFFYAFNSLIEAKKQIIITCDTYPK 276 Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209 L +R V + P+ + +++K ++ +D+ +A +I +++ S+ Sbjct: 277 EIADVDERLRTRFSWGLTVAVEPPELEMRVAILLKKAEAARVTLDEDVAFFIAKQVRSSV 336 Query: 210 VFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 E ++++ +A G I SLA E LK+ Sbjct: 337 RELEGALNRIIAMANFTGHAIDVSLAKEALKD 368 >gi|307746965|gb|ADN90235.1| Chromosomal replication initiator protein dnaA [Campylobacter jejuni subsp. jejuni M1] Length = 440 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 47/196 (23%), Positives = 76/196 (38%), Gaps = 21/196 (10%) Query: 67 VILVGPSGSGKSCLANIWSDKS----------RSTRF-----SNIAK-SLDSILIDTRK- 109 + + GP+G GK+ L + S S F SN+ SLD R Sbjct: 139 IFVYGPTGLGKTHLLQAVGNASLEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNC 198 Query: 110 -PVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 +L++D+ L D + F I N I D ++MT+ P + L SR Sbjct: 199 DVLLIDDVQFLGKTDKIQEEFFFIFNEIKNNDGQIIMTSDNPPNMLKGIIERLKSRFAHG 258 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 + I+ P D +I K I + + YI + ++ E ++ ++ A Sbjct: 259 IIADITPPQLDTKIAIIRKKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATI 318 Query: 226 RGMGITRSLAAEVLKE 241 G IT LA V+K+ Sbjct: 319 LGQEITLELAKSVMKD 334 >gi|116514954|ref|YP_802583.1| DnaA [Buchnera aphidicola str. Cc (Cinara cedri)] gi|122285650|sp|Q058F9|DNAA_BUCCC RecName: Full=Chromosomal replication initiator protein DnaA gi|116256808|gb|ABJ90490.1| chromosomal replication initiator protein [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 437 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 31/147 (21%), Positives = 67/147 (45%), Gaps = 11/147 (7%) Query: 92 RFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFP 148 +F N +S+D +L+D DI + +LF+ N++ +++TA +P Sbjct: 192 KFKNYYRSIDVLLLD--------DIQFFSNKKKSQEELFNTFNTLFNKQQKIVLTADCYP 243 Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 L SR K + I+ P+ K+++ + +I + ++A YI +++ + Sbjct: 244 EYISGITEQLKSRFKWGLTISINPPELKTRIKILLHKAYENKILLSYEVAKYIAKKIFSN 303 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLA 235 + E ++ K+ L++ IT +L Sbjct: 304 VRELEGILKKIQILSILNKEKITINLV 330 >gi|319893740|ref|YP_004150615.1| Chromosomal replication initiator protein DnaA [Staphylococcus pseudintermedius HKU10-03] gi|317163436|gb|ADV06979.1| Chromosomal replication initiator protein DnaA [Staphylococcus pseudintermedius HKU10-03] Length = 447 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 29/138 (21%), Positives = 62/138 (44%), Gaps = 3/138 (2%) Query: 111 VLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 +L++DI + + + FH N +HQ +++++ P L SR + + Sbjct: 211 LLIDDIQFIQKKEQTQEEFFHTFNDLHQNKKQIVISSDRPPKEISTLEERLKSRFQWGLI 270 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 V I+ PD + ++ K + + I + YI +++ ++ E + ++ + +G Sbjct: 271 VDITPPDFETRMAILQKKTEEENLDIPIESLTYIANQIQTNIRELEGALTRVLAYSKLQG 330 Query: 228 MGITRSLAAEVLKETQQC 245 IT L A+ LK+ Q Sbjct: 331 KPITTELTADALKDIIQV 348 >gi|161612751|ref|YP_001586716.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|197301043|ref|ZP_02663254.2| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|205356906|ref|ZP_02343245.2| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|161362115|gb|ABX65883.1| hypothetical protein SPAB_00450 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|197288946|gb|EDY28319.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|205325251|gb|EDZ13090.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|321222802|gb|EFX47873.1| Chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] Length = 225 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 28/120 (23%), Positives = 61/120 (50%), Gaps = 3/120 (2%) Query: 123 DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180 + +F + N I + + LL+T P + LPDL SRL + K+ L D+D L+ Sbjct: 106 EMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQA 165 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + ++ R + + + ++++R++R + +D++D+ +++ +T E+LK Sbjct: 166 LQLRARL-RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDHASITAQRKLTIPFVKEILK 224 >gi|56412621|ref|YP_149696.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197361556|ref|YP_002141192.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|81599733|sp|Q5PL41|HDA_SALPA RecName: Full=DnaA-homolog protein hda gi|226740579|sp|B5BB08|HDA_SALPK RecName: Full=DnaA-homolog protein hda gi|56126878|gb|AAV76384.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093032|emb|CAR58469.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 241 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 28/120 (23%), Positives = 61/120 (50%), Gaps = 3/120 (2%) Query: 123 DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180 + +F + N I + + LL+T P + LPDL SRL + K+ L D+D L+ Sbjct: 122 EMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQA 181 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + ++ R + + + ++++R++R + +D++D+ +++ +T E+LK Sbjct: 182 LQLRARL-RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDHASITAQRKLTIPFVKEILK 240 >gi|332882720|ref|ZP_08450331.1| replication initiator protein DnaA [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679222|gb|EGJ52208.1| replication initiator protein DnaA [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 473 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 3/124 (2%) Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 FHI N +HQ +++T+ PV L SR K +++ PD + K++ Sbjct: 256 FFHIFNHLHQTGKQVILTSDKAPVDLFDIEQRLLSRFKWGLSAELTTPDYNTRYKILQNK 315 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET--- 242 F I + + AY+ + + ++ E + + + A + LA +++++ Sbjct: 316 FYTDGAEISEDIIAYLAENIRTNVRELEGVSNSLIAQAAFNRKEYSIELAQSIIEKSVKN 375 Query: 243 QQCD 246 QCD Sbjct: 376 SQCD 379 >gi|296133562|ref|YP_003640809.1| chromosome segregation protein SMC [Thermincola sp. JR] gi|296032140|gb|ADG82908.1| chromosome segregation protein SMC [Thermincola potens JR] Length = 1189 Score = 36.2 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 10/165 (6%) Query: 66 VVILVGPSGSGKSCLANI--WSDKSRSTRFSNIAKSLDSIL--IDTRKPVLLEDIDLLDF 121 + +VGP+GSGKS +++ W +S + AK D I D RKPV + ++ L Sbjct: 26 ITAVVGPNGSGKSNISDAIRWVLGEQSAKILRGAKMEDVIFSGSDKRKPVGMAEVTLTLD 85 Query: 122 NDTQLFHIINSIHQYDSSLLMTART-FPVSWGVC-LPDLCSRLKAATVVK--ISLPDDDF 177 N T +F + S + + + F ++ C L D+ + K S+ Sbjct: 86 NSTGIFPVEYSEVTVTRRVFRSGESEFFINKTPCRLKDIHELFMDTGIGKEGYSIIGQGK 145 Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 +++++ DR++ I++ AA IV+ R L A KL D N+ Sbjct: 146 IDEILSSKSEDRRLIIEE--AAGIVKYKNRKLQAARKLEDTEQNM 188 >gi|296118604|ref|ZP_06837182.1| DNA-directed DNA replication initiator protein [Corynebacterium ammoniagenes DSM 20306] gi|295968503|gb|EFG81750.1| DNA-directed DNA replication initiator protein [Corynebacterium ammoniagenes DSM 20306] Length = 381 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 25/124 (20%), Positives = 54/124 (43%), Gaps = 11/124 (8%) Query: 89 RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTAR 145 R F ++LD +++D DI L+ ++ + FH N++HQ + +++++ Sbjct: 127 RQESFKRRYRNLDILMVD--------DIQFLEGKESTQEEFFHTFNALHQANKQIILSSD 178 Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 P L +R + + I PD + +++K + +D+ + I R Sbjct: 179 RPPKQLTTLEDRLRTRFEGGLITDIQPPDLETRIAILMKKASADGTTVDRAVLELIASRF 238 Query: 206 ERSL 209 E S+ Sbjct: 239 ESSI 242 >gi|15235986|ref|NP_194305.1| ABC transporter family protein [Arabidopsis thaliana] gi|75337760|sp|Q9SW08|AB4G_ARATH RecName: Full=ABC transporter G family member 4; Short=ABC transporter ABCG.4; Short=AtABCG4; AltName: Full=White-brown complex homolog protein 4; Short=AtWBC4 gi|4539293|emb|CAB39596.1| putative membrane transporter [Arabidopsis thaliana] gi|7269425|emb|CAB81385.1| putative membrane transporter [Arabidopsis thaliana] gi|332659709|gb|AEE85109.1| ABC transporter G family member 4 [Arabidopsis thaliana] Length = 577 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 21/107 (19%) Query: 61 SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120 S PS+++ ++GPSG+GKS L +I + ++ T S + L+S+LI Sbjct: 38 SHPSQILAIIGPSGAGKSTLLDILAARTSPTSGSIL---LNSVLI--------------- 79 Query: 121 FNDTQLFHIINSIHQYDS--SLLMTARTFPVSWGVCLPDLCSRLKAA 165 N + I + + Q+D+ LL + TF S + LP S++ + Sbjct: 80 -NPSSYRKISSYVPQHDTFFPLLTVSETFTFSASLLLPKNLSKVSSV 125 >gi|323463201|gb|ADX75354.1| chromosomal replication initiator protein DnaA [Staphylococcus pseudintermedius ED99] Length = 447 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 29/138 (21%), Positives = 62/138 (44%), Gaps = 3/138 (2%) Query: 111 VLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 +L++DI + + + FH N +HQ +++++ P L SR + + Sbjct: 211 LLIDDIQFIQKKEQTQEEFFHTFNDLHQNKKQIVISSDRPPKEISTLEERLKSRFQWGLI 270 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 V I+ PD + ++ K + + I + YI +++ ++ E + ++ + +G Sbjct: 271 VDITPPDFETRMAILQKKTEEENLDIPIESLTYIANQIQTNIRELEGALTRVLAYSKLQG 330 Query: 228 MGITRSLAAEVLKETQQC 245 IT L A+ LK+ Q Sbjct: 331 KPITTELTADALKDIIQV 348 >gi|319942621|ref|ZP_08016929.1| hypothetical protein HMPREF9464_02148 [Sutterella wadsworthensis 3_1_45B] gi|319803800|gb|EFW00732.1| hypothetical protein HMPREF9464_02148 [Sutterella wadsworthensis 3_1_45B] Length = 585 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 5/66 (7%) Query: 63 PSRVVILVGPSGSGKSCLANI----WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL 118 P ++ LVG SG+GKS L N+ W F IA+S + L RK + L D+ Sbjct: 369 PGEMIALVGSSGAGKSTLINLIPRFWVPTEGEIYFDGIAQS-ELTLKSLRKQIGLVSQDV 427 Query: 119 LDFNDT 124 F+DT Sbjct: 428 TIFDDT 433 >gi|239608100|gb|EEQ85087.1| vacuolar sorting protein 4b [Ajellomyces dermatitidis ER-3] Length = 831 Score = 36.2 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 19/40 (47%), Positives = 26/40 (65%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P+R ++L GP G+GK+ LA + +S ST FS A SL S Sbjct: 575 PARGMLLFGPPGTGKTMLARAVATESHSTFFSVSASSLTS 614 >gi|21223283|ref|NP_629062.1| ATP-binding protein [Streptomyces coelicolor A3(2)] gi|20520709|emb|CAD30900.1| putative ATP-binding protein [Streptomyces coelicolor A3(2)] Length = 258 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 17/26 (65%), Positives = 20/26 (76%) Query: 56 IDSWPSWPSRVVILVGPSGSGKSCLA 81 + S P P+RVV+L GPSGSGKS LA Sbjct: 48 VSSHPPIPTRVVLLCGPSGSGKSLLA 73 >gi|189200505|ref|XP_001936589.1| hypothetical protein PTRG_06256 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187983688|gb|EDU49176.1| hypothetical protein PTRG_06256 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 662 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 28/43 (65%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI 105 P+R ++L GP G+GK+ LA + +S+ST F+ A SL S + Sbjct: 406 PARGMLLFGPPGTGKTMLARAVATESKSTFFAISASSLTSKFL 448 >gi|327349285|gb|EGE78142.1| vacuolar sorting protein 4b [Ajellomyces dermatitidis ATCC 18188] Length = 840 Score = 36.2 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 19/40 (47%), Positives = 26/40 (65%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P+R ++L GP G+GK+ LA + +S ST FS A SL S Sbjct: 584 PARGMLLFGPPGTGKTMLARAVATESHSTFFSVSASSLTS 623 >gi|118479954|ref|YP_897105.1| ABC transporter ATP-binding protein [Bacillus thuringiensis str. Al Hakam] gi|118419179|gb|ABK87598.1| ABC transporter, ATP-binding protein [Bacillus thuringiensis str. Al Hakam] Length = 261 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 16/101 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V ++GPSGSGK+ L N+ S +T ILID + V + D L F L Sbjct: 42 VGIMGPSGSGKTTLLNVLSTIDNATN--------GEILIDGKDIVKMNDDKLALFRRDHL 93 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 I + D T V + LP S++KA+ + Sbjct: 94 GFIFQDYNLLD--------TLTVKENIALPLALSKVKASEI 126 >gi|50308283|ref|XP_454142.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49643277|emb|CAG99229.1| KLLA0E04379p [Kluyveromyces lactis] Length = 729 Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust. Identities = 19/40 (47%), Positives = 26/40 (65%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P R ++L GP G+GK+ LA + +S+ST FS A SL S Sbjct: 479 PVRGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTS 518 >gi|330470833|ref|YP_004408576.1| chromosomal replication initiator protein DnaA [Verrucosispora maris AB-18-032] gi|328813804|gb|AEB47976.1| chromosomal replication initiator protein DnaA [Verrucosispora maris AB-18-032] Length = 607 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 28/134 (20%), Positives = 60/134 (44%), Gaps = 3/134 (2%) Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 +L++DI L+ + + FH N++H + +++T+ P L +R + + Sbjct: 369 LLIDDIQFLENRERTQEEFFHTFNTLHNANKQIVITSDRSPKQLATLEDRLRTRFEWGLL 428 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 I PD + ++ K A +++ + +I R+ S+ E + ++ A Sbjct: 429 ADIQPPDLETRIAILQKKAAQERLYAPPDVLEFIASRVSNSIRELEGALIRVTAFASLTR 488 Query: 228 MGITRSLAAEVLKE 241 + SLA EVL++ Sbjct: 489 SSVELSLAEEVLRD 502 >gi|61212565|sp|Q6ARL8|DNAA_DESPS RecName: Full=Chromosomal replication initiator protein DnaA Length = 479 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 28/139 (20%), Positives = 60/139 (43%), Gaps = 3/139 (2%) Query: 111 VLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 +L+EDI L +L +++++ + +L+TA P + SR+ A + Sbjct: 245 LLVEDIHTLKGKKKTQEELNEVLDTLVKSGKRVLLTANAAPRELAGIDGEFRSRMSAGLI 304 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 I PD +++ + A +++ D+ + +Y+ Q + + E + + A G Sbjct: 305 TSIQAPDIKTRSRIVERKAAGQRLSFDEDMTSYLAQNVRGDVRQIESAITAIGARARLMG 364 Query: 228 MGITRSLAAEVLKETQQCD 246 I +L EV+ C+ Sbjct: 365 GYIDMNLIREVVGSVVGCN 383 >gi|75759280|ref|ZP_00739379.1| ABC transporter ATP-binding protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228910684|ref|ZP_04074495.1| Efflux ABC transporter, ATP-binding protein [Bacillus thuringiensis IBL 200] gi|74493229|gb|EAO56346.1| ABC transporter ATP-binding protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228848952|gb|EEM93795.1| Efflux ABC transporter, ATP-binding protein [Bacillus thuringiensis IBL 200] Length = 261 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 16/101 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V ++GPSGSGK+ L N+ S +T ILID + V + D L F L Sbjct: 42 VGIMGPSGSGKTTLLNVLSTIDNATN--------GEILIDGKDIVKMNDDKLALFRRDHL 93 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 I + D T V + LP S++KA+ + Sbjct: 94 GFIFQDYNLLD--------TLTVKENIALPLALSKVKASEI 126 >gi|281413983|ref|ZP_06245725.1| AAA+ family ATPase [Micrococcus luteus NCTC 2665] Length = 332 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 32/176 (18%) Query: 44 LVHSAIEQAVR-LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK-----------SRST 91 L H +EQ R + P+R ++L GP G+GK+ A + + + + T Sbjct: 101 LTHVLLEQRQRDALARHGLTPARRLLLTGPPGTGKTSTARVIAGELGLPLFSIRLDTVLT 160 Query: 92 RF-SNIAKSLDSI---LIDTRKPVLLEDIDLLDF-----NDT-QLFHIINSIHQY----- 136 +F A L + L +TR L +++D L ND ++ ++NS Q+ Sbjct: 161 KFMGETAAKLRLVFDALAETRGVYLFDEVDALGGDRAAQNDVGEIRRVLNSFLQFLEEDT 220 Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 S+++ A P L D + TV+ +LPDD +E VI A I+ Sbjct: 221 SDSVIIAATNHP-----SLLDNALFRRFDTVMDFALPDDAAVESVIKNRLASFHIY 271 >gi|229112296|ref|ZP_04241835.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus Rock1-15] gi|228671136|gb|EEL26441.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus Rock1-15] Length = 256 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 16/101 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V ++GPSGSGK+ L N+ S +T ILID + V + D L F L Sbjct: 37 VGIMGPSGSGKTTLLNVLSTIDNATN--------GEILIDGKDIVKMNDDKLALFRRDHL 88 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 I + D T V + LP S++KA+ + Sbjct: 89 GFIFQDYNLLD--------TLTVKENIALPLALSKVKASEI 121 >gi|223993497|ref|XP_002286432.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220977747|gb|EED96073.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 791 Score = 36.2 bits (82), Expect = 4.2, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 49/87 (56%), Gaps = 1/87 (1%) Query: 160 SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 ++ +AAT K ++ + LE ++ +R+ I ++A +R+ER + ++L D+ Sbjct: 598 AKARAATE-KSAMEEKRRLEAEATRLRMEREKRIAAEIATKESERLERERLEDQRLRDEK 656 Query: 220 DNLALSRGMGITRSLAAEVLKETQQCD 246 + +SR + +S A+EV+K+ QQ D Sbjct: 657 EKRCISRVLEEAKSEASEVMKQAQQMD 683 >gi|325953648|ref|YP_004237308.1| Chromosomal replication initiator protein dnaA [Weeksella virosa DSM 16922] gi|323436266|gb|ADX66730.1| Chromosomal replication initiator protein dnaA [Weeksella virosa DSM 16922] Length = 475 Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust. Identities = 41/169 (24%), Positives = 74/169 (43%), Gaps = 19/169 (11%) Query: 44 LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI 103 LVH AI Q ++ + +P + V+ V + N ++KS++ F + + +D + Sbjct: 189 LVH-AIGQEIKEL-----YPDKSVLYVSTEKFTMQFI-NAVANKSQND-FVHFYQMIDVL 240 Query: 104 LIDTRKPVLLEDIDLLDFN-DTQ--LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 +ID DI L TQ FHI N + Q +++T+ P + P L S Sbjct: 241 IID--------DIQFLAGKAKTQEAFFHIFNDLQQKGKQIILTSDKSPATLTEMEPRLIS 292 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209 R K ++ +PD +I + I I + + YI + +E ++ Sbjct: 293 RFKWGLNAELQMPDASTRRNIIQQKVEKDGIEIPETVLDYIAENVETNV 341 >gi|119194717|ref|XP_001247962.1| hypothetical protein CIMG_01733 [Coccidioides immitis RS] Length = 734 Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust. Identities = 19/40 (47%), Positives = 27/40 (67%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P+R ++L GP G+GK+ LA + +S+ST FS A SL S Sbjct: 479 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISATSLTS 518 >gi|194335531|ref|YP_002017325.1| type I secretion system ATPase [Pelodictyon phaeoclathratiforme BU-1] gi|194308008|gb|ACF42708.1| type I secretion system ATPase [Pelodictyon phaeoclathratiforme BU-1] Length = 570 Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 5/62 (8%) Query: 64 SRVVILVGPSGSGKS----CLANIWSD-KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL 118 +V +++GPSGSGKS C+ IW D K R +S D + + L +DI+L Sbjct: 358 GKVTVVLGPSGSGKSTLARCIVGIWPDTKGRVLIDGEPIESWDRMELGPHIGYLPQDIEL 417 Query: 119 LD 120 D Sbjct: 418 FD 419 >gi|42784031|ref|NP_981278.1| ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] gi|47568005|ref|ZP_00238711.1| ABC transporter, ATP-binding protein [Bacillus cereus G9241] gi|49478793|ref|YP_038877.1| ABC transporter ATP-binding protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196043979|ref|ZP_03111216.1| efflux ABC transporter, ATP-binding protein [Bacillus cereus 03BB108] gi|217962321|ref|YP_002340893.1| efflux ABC transporter, ATP-binding protein [Bacillus cereus AH187] gi|222098306|ref|YP_002532363.1| ABC transporter , ATP-binding protein [Bacillus cereus Q1] gi|225866833|ref|YP_002752211.1| efflux ABC transporter, ATP-binding protein [Bacillus cereus 03BB102] gi|228988094|ref|ZP_04148193.1| Efflux ABC transporter, ATP-binding protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229093941|ref|ZP_04225032.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus Rock3-42] gi|229141572|ref|ZP_04270104.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus BDRD-ST26] gi|229158453|ref|ZP_04286514.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus ATCC 4342] gi|229163830|ref|ZP_04291773.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus R309803] gi|229187096|ref|ZP_04314245.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus BGSC 6E1] gi|229199001|ref|ZP_04325687.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus m1293] gi|42739961|gb|AAS43886.1| ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] gi|47555308|gb|EAL13653.1| ABC transporter, ATP-binding protein [Bacillus cereus G9241] gi|49330349|gb|AAT60995.1| ABC transporter, ATP-binding protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196025315|gb|EDX63985.1| efflux ABC transporter, ATP-binding protein [Bacillus cereus 03BB108] gi|217066305|gb|ACJ80555.1| efflux ABC transporter, ATP-binding protein [Bacillus cereus AH187] gi|221242364|gb|ACM15074.1| ABC transporter, ATP-binding protein [Bacillus cereus Q1] gi|225786824|gb|ACO27041.1| efflux ABC transporter, ATP-binding protein [Bacillus cereus 03BB102] gi|228584467|gb|EEK42599.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus m1293] gi|228596405|gb|EEK54076.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus BGSC 6E1] gi|228619650|gb|EEK76533.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus R309803] gi|228624972|gb|EEK81738.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus ATCC 4342] gi|228641852|gb|EEK98151.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus BDRD-ST26] gi|228689423|gb|EEL43237.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus Rock3-42] gi|228771592|gb|EEM20059.1| Efflux ABC transporter, ATP-binding protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|324328733|gb|ADY23993.1| ABC transporter ATP-binding protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 256 Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 16/101 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V ++GPSGSGK+ L N+ S +T ILID + V + D L F L Sbjct: 37 VGIMGPSGSGKTTLLNVLSTIDNATN--------GEILIDGKDIVKMNDDKLALFRRDHL 88 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 I + D T V + LP S++KA+ + Sbjct: 89 GFIFQDYNLLD--------TLTVKENIALPLALSKVKASEI 121 >gi|324011194|gb|EGB80413.1| DnaA regulatory inactivator Hda [Escherichia coli MS 60-1] Length = 274 Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust. Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 123 DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180 + +F + N I + + LL+T P + LPDL SRL + K+ L D+D L+ Sbjct: 155 EMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQA 214 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + ++ R + + + ++++R++R + +D++D +++ +T E+LK Sbjct: 215 LQLRARL-RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 273 >gi|229014038|ref|ZP_04171162.1| Efflux ABC transporter, ATP-binding protein [Bacillus mycoides DSM 2048] gi|229020085|ref|ZP_04176866.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus AH1273] gi|229026314|ref|ZP_04182673.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus AH1272] gi|228735030|gb|EEL85666.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus AH1272] gi|228741195|gb|EEL91412.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus AH1273] gi|228747294|gb|EEL97173.1| Efflux ABC transporter, ATP-binding protein [Bacillus mycoides DSM 2048] Length = 256 Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 16/101 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V ++GPSGSGK+ L N+ S +T ILID + V + D L F L Sbjct: 37 VGIMGPSGSGKTTLLNVLSTIDNATN--------GEILIDGKDIVKMNDDKLALFRRDHL 88 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 I + D T V + LP S++KA+ + Sbjct: 89 GFIFQDYNLLD--------TLTVKENIALPLALSKVKASEI 121 >gi|30022900|ref|NP_834531.1| ABC transporter ATP-binding protein [Bacillus cereus ATCC 14579] gi|206969438|ref|ZP_03230392.1| efflux ABC transporter, ATP-binding protein [Bacillus cereus AH1134] gi|218234562|ref|YP_002369640.1| efflux ABC transporter, ATP-binding protein [Bacillus cereus B4264] gi|228955107|ref|ZP_04117122.1| Efflux ABC transporter, ATP-binding protein [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228961103|ref|ZP_04122729.1| Efflux ABC transporter, ATP-binding protein [Bacillus thuringiensis serovar pakistani str. T13001] gi|228981537|ref|ZP_04141834.1| Efflux ABC transporter, ATP-binding protein [Bacillus thuringiensis Bt407] gi|229048538|ref|ZP_04194099.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus AH676] gi|229072335|ref|ZP_04205539.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus F65185] gi|229082081|ref|ZP_04214564.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus Rock4-2] gi|229130114|ref|ZP_04259075.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus BDRD-Cer4] gi|229147404|ref|ZP_04275753.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus BDRD-ST24] gi|229153036|ref|ZP_04281217.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus m1550] gi|229181150|ref|ZP_04308482.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus 172560W] gi|229193113|ref|ZP_04320068.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10876] gi|296505295|ref|YP_003666995.1| ABC transporter ATP-binding protein [Bacillus thuringiensis BMB171] gi|29898459|gb|AAP11732.1| ABC transporter ATP-binding protein [Bacillus cereus ATCC 14579] gi|206735126|gb|EDZ52294.1| efflux ABC transporter, ATP-binding protein [Bacillus cereus AH1134] gi|218162519|gb|ACK62511.1| efflux ABC transporter, ATP-binding protein [Bacillus cereus B4264] gi|228590377|gb|EEK48241.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10876] gi|228602341|gb|EEK59830.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus 172560W] gi|228630456|gb|EEK87104.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus m1550] gi|228636086|gb|EEK92567.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus BDRD-ST24] gi|228653329|gb|EEL09206.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus BDRD-Cer4] gi|228701228|gb|EEL53731.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus Rock4-2] gi|228710760|gb|EEL62731.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus F65185] gi|228722802|gb|EEL74186.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus AH676] gi|228778216|gb|EEM26486.1| Efflux ABC transporter, ATP-binding protein [Bacillus thuringiensis Bt407] gi|228798546|gb|EEM45533.1| Efflux ABC transporter, ATP-binding protein [Bacillus thuringiensis serovar pakistani str. T13001] gi|228804617|gb|EEM51221.1| Efflux ABC transporter, ATP-binding protein [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|296326347|gb|ADH09275.1| ABC transporter ATP-binding protein [Bacillus thuringiensis BMB171] gi|326942615|gb|AEA18511.1| ABC transporter ATP-binding protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 256 Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 16/101 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V ++GPSGSGK+ L N+ S +T ILID + V + D L F L Sbjct: 37 VGIMGPSGSGKTTLLNVLSTIDNATN--------GEILIDGKDIVKMNDDKLALFRRDHL 88 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 I + D T V + LP S++KA+ + Sbjct: 89 GFIFQDYNLLD--------TLTVKENIALPLALSKVKASEI 121 >gi|269122801|ref|YP_003305378.1| Chromosomal replication initiator DnaA [Streptobacillus moniliformis DSM 12112] gi|268314127|gb|ACZ00501.1| Chromosomal replication initiator DnaA [Streptobacillus moniliformis DSM 12112] Length = 441 Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust. Identities = 40/180 (22%), Positives = 75/180 (41%), Gaps = 30/180 (16%) Query: 67 VILVGPSGSGKSCLANIWSDK------------SRSTRFSN-IAKSLDSILIDTRKPVLL 113 +++ G SG GK+ LA ++ + ST FSN + KS + K Sbjct: 136 LMIYGDSGLGKTHLAQAIGNEMIEKNPESKVFYTTSTEFSNELIKSFSERTTISFKDKY- 194 Query: 114 EDIDLLDFNDTQLFHII----------------NSIHQYDSSLLMTARTFPVSWGVCLPD 157 D+D+L +D Q F I N++H + +++ + +P Sbjct: 195 ADLDMLIVDDIQFFENIFGKGDDKIQKEFYNAFNTLHMANKPIILISDKYPEELTNVEAR 254 Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 L SRL + +V++ +PD +I + I +D++L +I +E ++ E V+ Sbjct: 255 LISRLVSGALVELKMPDKTSRISIIKTIITKENIPMDQELMYFIADELETNIRELEGFVN 314 >gi|227539247|ref|ZP_03969296.1| DNA-directed DNA replication initiator protein [Sphingobacterium spiritivorum ATCC 33300] gi|300770720|ref|ZP_07080599.1| DNA-directed DNA replication initiator protein [Sphingobacterium spiritivorum ATCC 33861] gi|227240929|gb|EEI90944.1| DNA-directed DNA replication initiator protein [Sphingobacterium spiritivorum ATCC 33300] gi|300763196|gb|EFK60013.1| DNA-directed DNA replication initiator protein [Sphingobacterium spiritivorum ATCC 33861] Length = 475 Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust. Identities = 34/153 (22%), Positives = 64/153 (41%), Gaps = 19/153 (12%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTR-FSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 P ++VI V K C + S K+ + F N +++D I++D D+ +F Sbjct: 201 PDKLVIYVSCE---KFCQQFVDSLKNNTINDFVNFYQAMDVIIMD----------DVHNF 247 Query: 122 NDTQ-----LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 + FHI N +HQ +++T+ P L SR K I +PD + Sbjct: 248 AGKEKTQDIFFHIFNHLHQSGKQIILTSDKAPKDLAGLEERLLSRFKWGLSADIQVPDLE 307 Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209 ++ K I + + + Y+ +++ S+ Sbjct: 308 TRMAILKKKMYSDGIELPENVVEYVAHQIDNSV 340 >gi|206976956|ref|ZP_03237857.1| efflux ABC transporter, ATP-binding protein [Bacillus cereus H3081.97] gi|206744761|gb|EDZ56167.1| efflux ABC transporter, ATP-binding protein [Bacillus cereus H3081.97] Length = 256 Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 16/101 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V ++GPSGSGK+ L N+ S +T ILID + V + D L F L Sbjct: 37 VGIMGPSGSGKTTLLNVLSTIDNATN--------GEILIDGKDIVKMNDDKLALFRRDHL 88 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 I + D T V + LP S++KA+ + Sbjct: 89 GFIFQDYNLLD--------TLTVKENIALPLALSKVKASEI 121 >gi|300958876|ref|ZP_07170982.1| DnaA regulatory inactivator Hda [Escherichia coli MS 175-1] gi|300314478|gb|EFJ64262.1| DnaA regulatory inactivator Hda [Escherichia coli MS 175-1] Length = 274 Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust. Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 123 DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180 + +F + N I + + LL+T P + LPDL SRL + K+ L D+D L+ Sbjct: 155 EMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQA 214 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + ++ R + + + ++++R++R + +D++D +++ +T E+LK Sbjct: 215 LQLRARL-RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 273 >gi|269215749|ref|ZP_06159603.1| ABC transporter, permease/ATP-binding protein [Slackia exigua ATCC 700122] gi|269130699|gb|EEZ61775.1| ABC transporter, permease/ATP-binding protein [Slackia exigua ATCC 700122] Length = 579 Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 8/88 (9%) Query: 65 RVVILVGPSGSGKSCL----ANIWSDKSRSTRFSNI-AKSLDSILIDTRKPVLLEDIDLL 119 +V +VGPSGSGKS L A W + + R I +S+DS + + +D+ L Sbjct: 363 KVTAIVGPSGSGKSTLLRLIARFWDVDAGAVRIGGIDVRSVDSEHLMNYLSFVFQDVVL- 421 Query: 120 DFNDTQLFHI-INSIHQYDSSLLMTART 146 F+DT + +I I + D +++ AR Sbjct: 422 -FDDTVMNNIRIGNSQATDEQVMVAARA 448 >gi|255947392|ref|XP_002564463.1| Pc22g04240 [Penicillium chrysogenum Wisconsin 54-1255] gi|211591480|emb|CAP97712.1| Pc22g04240 [Penicillium chrysogenum Wisconsin 54-1255] Length = 819 Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust. Identities = 19/40 (47%), Positives = 27/40 (67%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P+R ++L GP G+GK+ LA + +S+ST FS A SL S Sbjct: 563 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTS 602 >gi|218900000|ref|YP_002448411.1| efflux ABC transporter, ATP-binding protein [Bacillus cereus G9842] gi|228903347|ref|ZP_04067478.1| Efflux ABC transporter, ATP-binding protein [Bacillus thuringiensis IBL 4222] gi|228923585|ref|ZP_04086865.1| Efflux ABC transporter, ATP-binding protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|229032492|ref|ZP_04188460.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus AH1271] gi|218542170|gb|ACK94564.1| efflux ABC transporter, ATP-binding protein [Bacillus cereus G9842] gi|228728861|gb|EEL79869.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus AH1271] gi|228836054|gb|EEM81415.1| Efflux ABC transporter, ATP-binding protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228856308|gb|EEN00837.1| Efflux ABC transporter, ATP-binding protein [Bacillus thuringiensis IBL 4222] Length = 256 Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 16/101 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V ++GPSGSGK+ L N+ S +T ILID + V + D L F L Sbjct: 37 VGIMGPSGSGKTTLLNVLSTIDNATN--------GEILIDGKDIVKMNDDKLALFRRDHL 88 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 I + D T V + LP S++KA+ + Sbjct: 89 GFIFQDYNLLD--------TLTVKENIALPLALSKVKASEI 121 >gi|196041421|ref|ZP_03108714.1| efflux ABC transporter, ATP-binding protein [Bacillus cereus NVH0597-99] gi|196027669|gb|EDX66283.1| efflux ABC transporter, ATP-binding protein [Bacillus cereus NVH0597-99] Length = 256 Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 16/101 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V ++GPSGSGK+ L N+ S +T ILID + V + D L F L Sbjct: 37 VGIMGPSGSGKTTLLNVLSTIDNATN--------GEILIDGKDIVKMNDDKLALFRRDHL 88 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 I + D T V + LP S++KA+ + Sbjct: 89 GFIFQDYNLLD--------TLTVKENIALPLALSKVKASEI 121 >gi|25026557|ref|NP_736611.1| chromosomal replication initiation protein [Corynebacterium efficiens YS-314] gi|38257617|sp|Q8FUL7|DNAA_COREF RecName: Full=Chromosomal replication initiator protein DnaA gi|23491836|dbj|BAC16811.1| putative chromosomal replication initiator protein DnaA [Corynebacterium efficiens YS-314] Length = 573 Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust. Identities = 25/124 (20%), Positives = 52/124 (41%), Gaps = 11/124 (8%) Query: 89 RSTRFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTAR 145 R F ++LD +++D DI L + + FH N++HQ + +++++ Sbjct: 319 RQESFKRRYRNLDILMVD--------DIQFLAGKEGTQEEFFHTFNALHQAEKQIILSSD 370 Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 P L +R + + I PD + +++K +D+++ I R Sbjct: 371 RPPRQLTTLEDRLRTRFEGGLITDIQPPDLETRIAILMKKAQADGTHVDREVLELIASRF 430 Query: 206 ERSL 209 E S+ Sbjct: 431 ESSI 434 >gi|172039893|ref|YP_001799607.1| MshA glycosyltransferase [Corynebacterium urealyticum DSM 7109] gi|310947058|sp|B1VEI4|MSHA_CORU7 RecName: Full=D-inositol-3-phosphate glycosyltransferase; AltName: Full=N-acetylglucosamine-inositol-phosphate N-acetylglucosaminyltransferase; Short=GlcNAc-Ins-P N-acetylglucosaminyltransferase gi|171851197|emb|CAQ04173.1| MshA glycosyltransferase [Corynebacterium urealyticum DSM 7109] Length = 424 Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 5/53 (9%) Query: 46 HSAIEQAVRLIDSWPSWPSRVVILVGPSGSG---KSCLANIWSDK--SRSTRF 93 H ++ A LI+ +P P RV+I GPSGSG CL + + SR+ RF Sbjct: 239 HVLLQAAATLIERYPDMPIRVLICGGPSGSGLERPKCLEELAEELGISRAVRF 291 >gi|115389874|ref|XP_001212442.1| vacuolar sorting protein 4b [Aspergillus terreus NIH2624] gi|114194838|gb|EAU36538.1| vacuolar sorting protein 4b [Aspergillus terreus NIH2624] Length = 748 Score = 36.2 bits (82), Expect = 4.6, Method: Composition-based stats. Identities = 18/40 (45%), Positives = 27/40 (67%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P+R ++L GP G+GK+ LA + +S+ST FS A +L S Sbjct: 489 PARGMLLFGPPGTGKTMLARAVATESKSTFFSVSASTLTS 528 >gi|301046372|ref|ZP_07193533.1| DnaA regulatory inactivator Hda [Escherichia coli MS 185-1] gi|300301654|gb|EFJ58039.1| DnaA regulatory inactivator Hda [Escherichia coli MS 185-1] Length = 269 Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust. Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 123 DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180 + +F + N I + + LL+T P + LPDL SRL + K+ L D+D L+ Sbjct: 150 EMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQA 209 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + ++ R + + + ++++R++R + +D++D +++ +T E+LK Sbjct: 210 LQLRARL-RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 268 >gi|315288098|gb|EFU47498.1| DnaA regulatory inactivator Hda [Escherichia coli MS 110-3] Length = 230 Score = 36.2 bits (82), Expect = 4.7, Method: Compositional matrix adjust. Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 123 DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180 + +F + N I + + LL+T P + LPDL SRL + K+ L D+D L+ Sbjct: 111 EMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQA 170 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + ++ R + + + ++++R++R + +D++D +++ +T E+LK Sbjct: 171 LQLRARL-RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 229 >gi|50547369|ref|XP_501154.1| YALI0B20834p [Yarrowia lipolytica] gi|49647020|emb|CAG83407.1| YALI0B20834p [Yarrowia lipolytica] Length = 1050 Score = 36.2 bits (82), Expect = 4.7, Method: Composition-based stats. Identities = 19/40 (47%), Positives = 26/40 (65%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P+R ++L GP G+GK+ LA + +S ST FS A SL S Sbjct: 800 PARGMLLFGPPGTGKTMLARAVATESNSTFFSISASSLTS 839 >gi|315640356|ref|ZP_07895472.1| DNA-directed DNA replication initiator protein [Enterococcus italicus DSM 15952] gi|315483892|gb|EFU74372.1| DNA-directed DNA replication initiator protein [Enterococcus italicus DSM 15952] Length = 446 Score = 36.2 bits (82), Expect = 4.7, Method: Compositional matrix adjust. Identities = 34/152 (22%), Positives = 64/152 (42%), Gaps = 11/152 (7%) Query: 92 RFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFP 148 F N +++D +L+D DI L + + F+ ++ + +++T+ P Sbjct: 199 EFRNEYRTVDLLLVD--------DIQFLVNKEGTQEEFFNTFEELYLNNKQIVLTSDRLP 250 Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 L SR V I+ PD + ++ K + I +YI +++ + Sbjct: 251 NEIPTLPERLVSRFAWGLSVDITPPDLETRTAILRKKAEAENLEIPDDTLSYIAGQIDSN 310 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + E + ++ A R + IT SLAAE LK Sbjct: 311 IRELEGALVRVQAFAAMRNVDITTSLAAEALK 342 >gi|269849587|sp|B7LKE6|HDA_ESCF3 RecName: Full=DnaA-homolog protein hda Length = 233 Score = 36.2 bits (82), Expect = 4.7, Method: Compositional matrix adjust. Identities = 28/117 (23%), Positives = 59/117 (50%), Gaps = 3/117 (2%) Query: 126 LFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEKVIV 183 +F + N I + + LL+T P + LPDL SRL + K+ L D+D L+ + + Sbjct: 117 IFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQL 176 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + R + + + ++++R++R + +D++D +++ +T E+LK Sbjct: 177 RARL-RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 232 >gi|259508311|ref|ZP_05751211.1| chromosomal replication initiator protein DnaA [Corynebacterium efficiens YS-314] gi|259164129|gb|EEW48683.1| chromosomal replication initiator protein DnaA [Corynebacterium efficiens YS-314] Length = 566 Score = 36.2 bits (82), Expect = 4.7, Method: Compositional matrix adjust. Identities = 25/124 (20%), Positives = 52/124 (41%), Gaps = 11/124 (8%) Query: 89 RSTRFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTAR 145 R F ++LD +++D DI L + + FH N++HQ + +++++ Sbjct: 312 RQESFKRRYRNLDILMVD--------DIQFLAGKEGTQEEFFHTFNALHQAEKQIILSSD 363 Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 P L +R + + I PD + +++K +D+++ I R Sbjct: 364 RPPRQLTTLEDRLRTRFEGGLITDIQPPDLETRIAILMKKAQADGTHVDREVLELIASRF 423 Query: 206 ERSL 209 E S+ Sbjct: 424 ESSI 427 >gi|229135678|ref|ZP_04264455.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus BDRD-ST196] gi|228647776|gb|EEL03834.1| Efflux ABC transporter, ATP-binding protein [Bacillus cereus BDRD-ST196] Length = 256 Score = 36.2 bits (82), Expect = 4.7, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 16/101 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V ++GPSGSGK+ L N+ S +T ILID + V + D L F L Sbjct: 37 VGIMGPSGSGKTTLLNVLSTIDNATN--------GEILIDGKDIVKMNDDKLALFRRDHL 88 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 I + D T V + LP S++KA+ + Sbjct: 89 GFIFQDYNLLD--------TLTVKENIALPLALSKVKASEI 121 >gi|296271546|ref|YP_003654177.1| chromosomal replication initiator protein DnaA [Arcobacter nitrofigilis DSM 7299] gi|296095721|gb|ADG91671.1| chromosomal replication initiator protein DnaA [Arcobacter nitrofigilis DSM 7299] Length = 437 Score = 35.8 bits (81), Expect = 4.8, Method: Compositional matrix adjust. Identities = 29/141 (20%), Positives = 67/141 (47%), Gaps = 7/141 (4%) Query: 111 VLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 +L++DI L + + FH N +H + ++MT+ P + L SR + Sbjct: 200 LLIDDIQFLSGKEQTQEEFFHTFNELHNAEKQIVMTSDRLPSQIAGLVDRLKSRFEWGLT 259 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA--LS 225 + +P + +I K I +++++ YI ++ S+ E ++ +++ A L+ Sbjct: 260 ADVQIPGLETKIAIIEKKSELNGIHLEREIVNYIATNLDNSIREIEGVLIRINASAALLN 319 Query: 226 RGMGI--TRSLAAEVLKETQQ 244 + + + ++L E +KET++ Sbjct: 320 QEINLPMVQNLLKEQIKETKE 340 >gi|300940261|ref|ZP_07154858.1| DnaA regulatory inactivator Hda [Escherichia coli MS 21-1] gi|300454902|gb|EFK18395.1| DnaA regulatory inactivator Hda [Escherichia coli MS 21-1] Length = 270 Score = 35.8 bits (81), Expect = 4.8, Method: Compositional matrix adjust. Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 123 DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180 + +F + N I + + LL+T P + LPDL SRL + K+ L D+D L+ Sbjct: 151 EMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQA 210 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + ++ R + + + ++++R++R + +D++D +++ +T E+LK Sbjct: 211 LQLRARL-RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 269 >gi|296814720|ref|XP_002847697.1| vacuolar sorting protein 4b [Arthroderma otae CBS 113480] gi|238840722|gb|EEQ30384.1| vacuolar sorting protein 4b [Arthroderma otae CBS 113480] Length = 815 Score = 35.8 bits (81), Expect = 4.8, Method: Compositional matrix adjust. Identities = 19/40 (47%), Positives = 27/40 (67%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P+R ++L GP G+GK+ LA + +S+ST FS A SL S Sbjct: 571 PARGMLLFGPPGTGKTMLARAVATESKSTFFSVSASSLAS 610 >gi|194288949|ref|YP_002004856.1| lipida exportABC system; composite ATP-binding membrane component [Cupriavidus taiwanensis LMG 19424] gi|193222784|emb|CAQ68787.1| lipidA exportABC system; composite ATP-binding membrane component [Cupriavidus taiwanensis LMG 19424] Length = 591 Score = 35.8 bits (81), Expect = 4.8, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 63 PSRVVILVGPSGSGKSCLANI---WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P VV LVGPSGSGK+ L N+ + D + + + L D R + D++ Sbjct: 374 PGEVVALVGPSGSGKTTLVNLVPRFFDPTSGRILLDGVPLTELALKDLRNQIAFVSQDVV 433 Query: 120 DFNDT 124 FNDT Sbjct: 434 LFNDT 438 >gi|78484347|ref|YP_390272.1| chromosomal replication initiator protein DnaA [Thiomicrospira crunogena XCL-2] gi|123728109|sp|Q31JS5|DNAA_THICR RecName: Full=Chromosomal replication initiator protein DnaA gi|78362633|gb|ABB40598.1| chromosomal replication initiator protein DnaA [Thiomicrospira crunogena XCL-2] Length = 467 Score = 35.8 bits (81), Expect = 4.8, Method: Compositional matrix adjust. Identities = 31/152 (20%), Positives = 67/152 (44%), Gaps = 11/152 (7%) Query: 93 FSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPV 149 F +SLD++LID DI + + + FH N++ + + +++T+ FP Sbjct: 222 FKRFYRSLDALLID--------DIQFFAKKEQSQEEFFHTFNTLLEGNKQVILTSDRFPK 273 Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209 L SR + + P+ + +++K A+ + ++A +I +R+ ++ Sbjct: 274 EVDGLEDRLKSRFGWGLTIAVEPPEFEMRVAILMKKAAEFGFLLPDEVAFFIAKRLRGNV 333 Query: 210 VFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 E + ++ A +T LA + LK+ Sbjct: 334 RDLEGALKRVGAFAQFTQQLVTVDLAKDALKD 365 >gi|51244130|ref|YP_064014.1| chromosomal replication initiator protein DnaA [Desulfotalea psychrophila LSv54] gi|50875167|emb|CAG35007.1| related to chromosomal replication initiator protein DnaA [Desulfotalea psychrophila LSv54] Length = 487 Score = 35.8 bits (81), Expect = 4.8, Method: Compositional matrix adjust. Identities = 28/139 (20%), Positives = 60/139 (43%), Gaps = 3/139 (2%) Query: 111 VLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 +L+EDI L +L +++++ + +L+TA P + SR+ A + Sbjct: 253 LLVEDIHTLKGKKKTQEELNEVLDTLVKSGKRVLLTANAAPRELAGIDGEFRSRMSAGLI 312 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 I PD +++ + A +++ D+ + +Y+ Q + + E + + A G Sbjct: 313 TSIQAPDIKTRSRIVERKAAGQRLSFDEDMTSYLAQNVRGDVRQIESAITAIGARARLMG 372 Query: 228 MGITRSLAAEVLKETQQCD 246 I +L EV+ C+ Sbjct: 373 GYIDMNLIREVVGSVVGCN 391 >gi|322515535|ref|ZP_08068519.1| DnaA regulatory inactivator Hda [Actinobacillus ureae ATCC 25976] gi|322118425|gb|EFX90682.1| DnaA regulatory inactivator Hda [Actinobacillus ureae ATCC 25976] Length = 236 Score = 35.8 bits (81), Expect = 4.9, Method: Compositional matrix adjust. Identities = 26/122 (21%), Positives = 59/122 (48%), Gaps = 8/122 (6%) Query: 126 LFHIINSIHQ--------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 +F++ N I + + + LL++A P + LPDL SRL V +++ D+ Sbjct: 113 IFNLFNQIREQQGLFGSGHKTLLLISADCPPHQLKINLPDLRSRLTWGEVYQLNDLSDEQ 172 Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237 ++ + + + + ++A ++++R++R L +D++D +L +T E Sbjct: 173 KRIILQRNAYQKGMELSDEVANFLLKRLDRDLQTLSTELDRLDRASLQAQRKLTVPFVKE 232 Query: 238 VL 239 +L Sbjct: 233 IL 234 >gi|300897622|ref|ZP_07116027.1| DnaA regulatory inactivator Hda [Escherichia coli MS 198-1] gi|300997976|ref|ZP_07181907.1| DnaA regulatory inactivator Hda [Escherichia coli MS 200-1] gi|301329019|ref|ZP_07222046.1| DnaA regulatory inactivator Hda [Escherichia coli MS 78-1] gi|301644486|ref|ZP_07244483.1| DnaA regulatory inactivator Hda [Escherichia coli MS 146-1] gi|300304077|gb|EFJ58597.1| DnaA regulatory inactivator Hda [Escherichia coli MS 200-1] gi|300358622|gb|EFJ74492.1| DnaA regulatory inactivator Hda [Escherichia coli MS 198-1] gi|300844653|gb|EFK72413.1| DnaA regulatory inactivator Hda [Escherichia coli MS 78-1] gi|301077231|gb|EFK92037.1| DnaA regulatory inactivator Hda [Escherichia coli MS 146-1] Length = 257 Score = 35.8 bits (81), Expect = 4.9, Method: Compositional matrix adjust. Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 123 DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180 + +F + N I + + LL+T P + LPDL SRL + K+ L D+D L+ Sbjct: 138 EMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQA 197 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + ++ R + + + ++++R++R + +D++D +++ +T E+LK Sbjct: 198 LQLRARL-RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 256 >gi|291565552|dbj|BAI87834.1| AAA ATPase [Aspergillus oryzae] Length = 784 Score = 35.8 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 18/40 (45%), Positives = 27/40 (67%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P+R ++L GP G+GK+ LA + +S+ST FS A +L S Sbjct: 528 PARGMLLFGPPGTGKTMLARAVATESKSTFFSVSASTLTS 567 >gi|237653423|ref|YP_002889737.1| DnaA regulatory inactivator Hda [Thauera sp. MZ1T] gi|237624670|gb|ACR01360.1| DnaA regulatory inactivator Hda [Thauera sp. MZ1T] Length = 230 Score = 35.8 bits (81), Expect = 4.9, Method: Compositional matrix adjust. Identities = 43/185 (23%), Positives = 87/185 (47%), Gaps = 8/185 (4%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN---IAKSLDSILIDTRKPVL-LEDIDL 118 P+R + L G GSG+S L D +R+ A +++ L +T +L ++D D Sbjct: 44 PARHIYLWGAPGSGRSHLLRAAVDAARAAGRPAHLLAAATVEDHLPETPGALLAIDDADQ 103 Query: 119 LD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCL-PDLCSRLKAATVVKISLPDDD 176 L LF+ N SLL+ P+ G+ L DL +R+ + + ++ DDD Sbjct: 104 LGAAAQIALFNAFNRARANGQSLLLCGPAAPL--GLALREDLRTRIGQSLIYEVKPLDDD 161 Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236 +++ + A R + + ++ ++++ R L +++D +D +L IT L Sbjct: 162 ARAEILTTLAARRGLRLADEVVDFLLRHGRRELSSLREVLDALDRASLEHKRPITLPLLR 221 Query: 237 EVLKE 241 +++++ Sbjct: 222 DMIQQ 226 >gi|148926820|ref|ZP_01810499.1| chromosomal replication initiator protein [Campylobacter jejuni subsp. jejuni CG8486] gi|145844545|gb|EDK21652.1| chromosomal replication initiator protein [Campylobacter jejuni subsp. jejuni CG8486] Length = 383 Score = 35.8 bits (81), Expect = 4.9, Method: Compositional matrix adjust. Identities = 47/196 (23%), Positives = 75/196 (38%), Gaps = 21/196 (10%) Query: 67 VILVGPSGSGKSCLANIWSDKS----------RSTRF-----SNIAK-SLDSILIDTRK- 109 + + GP+G GK+ L + S S F SN+ SLD R Sbjct: 139 IFVYGPTGLGKTHLLQAVGNASLEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNC 198 Query: 110 -PVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 +L++D+ L D + F I N I D ++MT+ P L SR Sbjct: 199 DVLLIDDVQFLGKTDKIQEEFFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHG 258 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 + I+ P D +I K I + + YI + ++ E ++ ++ A Sbjct: 259 IIADITPPQLDTKIAIIRKKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATI 318 Query: 226 RGMGITRSLAAEVLKE 241 G IT LA V+K+ Sbjct: 319 LGQEITLELAKSVMKD 334 >gi|324008594|gb|EGB77813.1| DnaA regulatory inactivator Hda [Escherichia coli MS 57-2] Length = 257 Score = 35.8 bits (81), Expect = 4.9, Method: Compositional matrix adjust. Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 123 DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180 + +F + N I + + LL+T P + LPDL SRL + K+ L D+D L+ Sbjct: 138 EMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQA 197 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + ++ R + + + ++++R++R + +D++D +++ +T E+LK Sbjct: 198 LQLRARL-RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 256 >gi|317143566|ref|XP_001819556.2| AAA family ATPase [Aspergillus oryzae RIB40] Length = 769 Score = 35.8 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 18/40 (45%), Positives = 27/40 (67%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P+R ++L GP G+GK+ LA + +S+ST FS A +L S Sbjct: 527 PARGMLLFGPPGTGKTMLARAVATESKSTFFSVSASTLTS 566 >gi|119485656|ref|ZP_01619931.1| chromosomal replication initiation protein [Lyngbya sp. PCC 8106] gi|119456981|gb|EAW38108.1| chromosomal replication initiation protein [Lyngbya sp. PCC 8106] Length = 452 Score = 35.8 bits (81), Expect = 5.0, Method: Compositional matrix adjust. Identities = 33/165 (20%), Positives = 67/165 (40%), Gaps = 7/165 (4%) Query: 80 LANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSS 139 +A I D +S F + ++ D +L+D ++ I+ ++ + FH N++H+ Sbjct: 193 IAAIRKDSMQS--FRDHYRAADVLLVDD-----IQFIEGKEYTQEEFFHTFNTLHEAGKQ 245 Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199 +++ + P LCSR V I PD + ++ K + + + + Sbjct: 246 VVLASDRPPNQIPRLQERLCSRFSMGLVADIQPPDLETRMAILQKKAEYENVRLSEGVVE 305 Query: 200 YIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 YI R ++ E + + G+ +T A VL +Q Sbjct: 306 YIASRYTSNIRELEGALIRAVAYTSISGLPMTVESIAPVLSPAEQ 350 >gi|226524737|ref|NP_416991.2| ATPase regulatory factor involved in DnaA inactivation [Escherichia coli str. K-12 substr. MG1655] gi|293405931|ref|ZP_06649923.1| DNA replication initiation factor [Escherichia coli FVEC1412] gi|293410891|ref|ZP_06654467.1| DnaA regulatory inactivator Hda [Escherichia coli B354] gi|293446849|ref|ZP_06663271.1| DnaA regulatory inactivator Hda [Escherichia coli B088] gi|298381680|ref|ZP_06991279.1| DNA replication initiation factor [Escherichia coli FVEC1302] gi|269849566|sp|A7ZPT9|HDA_ECO24 RecName: Full=DnaA-homolog protein hda gi|269849567|sp|B7UGN4|HDA_ECO27 RecName: Full=DnaA-homolog protein hda gi|269849568|sp|B7MHX7|HDA_ECO45 RecName: Full=DnaA-homolog protein hda gi|269849569|sp|B7LCN6|HDA_ECO55 RecName: Full=DnaA-homolog protein hda gi|269849570|sp|P69933|HDA_ECO57 RecName: Full=DnaA-homolog protein hda gi|269849571|sp|B5Z033|HDA_ECO5E RecName: Full=DnaA-homolog protein hda gi|269849572|sp|B7NQN5|HDA_ECO7I RecName: Full=DnaA-homolog protein hda gi|269849573|sp|B7MYC3|HDA_ECO81 RecName: Full=DnaA-homolog protein hda gi|269849574|sp|B7M7K0|HDA_ECO8A RecName: Full=DnaA-homolog protein hda gi|269849575|sp|C4ZX71|HDA_ECOBW RecName: Full=DnaA-homolog protein hda gi|269849576|sp|B1XAX1|HDA_ECODH RecName: Full=DnaA-homolog protein hda gi|269849577|sp|A8A2Y8|HDA_ECOHS RecName: Full=DnaA-homolog protein hda gi|269849578|sp|A1ADY9|HDA_ECOK1 RecName: Full=DnaA-homolog protein hda gi|269849579|sp|Q0TEZ2|HDA_ECOL5 RecName: Full=DnaA-homolog protein hda gi|269849580|sp|P69932|HDA_ECOL6 RecName: Full=DnaA-homolog protein hda gi|269849581|sp|B1IWG4|HDA_ECOLC RecName: Full=DnaA-homolog protein hda gi|269849582|sp|P69931|HDA_ECOLI RecName: Full=DnaA-homolog protein hda gi|269849583|sp|B7N678|HDA_ECOLU RecName: Full=DnaA-homolog protein hda gi|269849584|sp|B6I568|HDA_ECOSE RecName: Full=DnaA-homolog protein hda gi|269849585|sp|B1LNE6|HDA_ECOSM RecName: Full=DnaA-homolog protein hda gi|269849586|sp|Q1R8P2|HDA_ECOUT RecName: Full=DnaA-homolog protein hda gi|269849588|sp|B2TXS1|HDA_SHIB3 RecName: Full=DnaA-homolog protein hda gi|269849589|sp|Q31XZ6|HDA_SHIBS RecName: Full=DnaA-homolog protein hda gi|269849590|sp|Q32D72|HDA_SHIDS RecName: Full=DnaA-homolog protein hda gi|269849591|sp|Q0T224|HDA_SHIF8 RecName: Full=DnaA-homolog protein hda gi|269849592|sp|P69934|HDA_SHIFL RecName: Full=DnaA-homolog protein hda gi|269849593|sp|Q3YZ56|HDA_SHISS RecName: Full=DnaA-homolog protein hda gi|226510964|gb|AAC75549.2| ATPase regulatory factor involved in DnaA inactivation [Escherichia coli str. K-12 substr. MG1655] gi|291323679|gb|EFE63107.1| DnaA regulatory inactivator Hda [Escherichia coli B088] gi|291428139|gb|EFF01166.1| DNA replication initiation factor [Escherichia coli FVEC1412] gi|291471359|gb|EFF13843.1| DnaA regulatory inactivator Hda [Escherichia coli B354] gi|298279122|gb|EFI20636.1| DNA replication initiation factor [Escherichia coli FVEC1302] Length = 233 Score = 35.8 bits (81), Expect = 5.0, Method: Compositional matrix adjust. Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 123 DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180 + +F + N I + + LL+T P + LPDL SRL + K+ L D+D L+ Sbjct: 114 EMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQA 173 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + ++ R + + + ++++R++R + +D++D +++ +T E+LK Sbjct: 174 LQLRARL-RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 232 >gi|149198967|ref|ZP_01876008.1| chromosomal replication initiation protein [Lentisphaera araneosa HTCC2155] gi|149137962|gb|EDM26374.1| chromosomal replication initiation protein [Lentisphaera araneosa HTCC2155] Length = 470 Score = 35.8 bits (81), Expect = 5.0, Method: Compositional matrix adjust. Identities = 46/212 (21%), Positives = 91/212 (42%), Gaps = 29/212 (13%) Query: 54 RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTR-FSNI----AKSLDSILIDTR 108 + + P + + + G SG GKS L + + ++ S + I A+ +I ID+ Sbjct: 157 KAVSESPGFSFNPLFIYGSSGLGKSHLLHAIAQETLSHNPYHRIEYLSAEEFSNIFIDSI 216 Query: 109 KP---------------VLLEDIDLLDFNDT----QLFHIINSIHQYDSSLLMTARTFPV 149 K +LL+D+ L N T + FH N+++ + +++T+ P Sbjct: 217 KNQDGHNFRKRFRNVDILLLDDVQFLK-NKTKTQEEFFHTFNALYSLNKQIVLTSDCQPH 275 Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKV-IVKMFADR-QIFIDKKLAAYIVQRMER 207 L SR + +V + P+ F +V I+++ D + I ++ +I ++ Sbjct: 276 ELDGLEKRLVSRFEHGQIVDVLKPE--FETRVAILRLKRDSMNVHIPNEVLDFIASNIKS 333 Query: 208 SLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + E + ++ A + G + SLA EVL Sbjct: 334 HIRKLEGALVRLVTYASTMGYEVNVSLAREVL 365 >gi|315223902|ref|ZP_07865748.1| DNA-directed DNA replication initiator protein [Capnocytophaga ochracea F0287] gi|314946131|gb|EFS98134.1| DNA-directed DNA replication initiator protein [Capnocytophaga ochracea F0287] Length = 473 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 36/160 (22%), Positives = 68/160 (42%), Gaps = 14/160 (8%) Query: 56 IDSWPSWPSRVVILVGPSGSGKSCL-ANIWSDKSRST--RFSNIAKSLDSILIDTRKPVL 112 +D +P + V+ V + + A+ DK ++T F + + +D +++D Sbjct: 188 VDIKEKYPKKKVLYVSAEKFTQQFISASTAKDKDKNTLNDFIHFYQLIDVLIVD------ 241 Query: 113 LEDIDLLDFN-DTQ--LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 DI L TQ FHI N +HQ +++T+ PV L SR K + Sbjct: 242 --DIQFLSGKVKTQDAFFHIFNHLHQNGKQVILTSDKAPVDLFDIEQRLLSRFKWGLSAE 299 Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209 + PD + K++ F + I + AY+ + + ++ Sbjct: 300 LQTPDYETRYKILENKFYNDGAEIGDDIIAYLAENIRTNV 339 >gi|187775811|ref|ZP_02798598.2| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4196] gi|189405751|ref|ZP_02823873.2| DnaA family protein Hda [Escherichia coli O157:H7 str. EC508] gi|194432059|ref|ZP_03064348.1| DnaA family protein Hda [Shigella dysenteriae 1012] gi|293415759|ref|ZP_06658402.1| DnaA regulatory inactivator Hda [Escherichia coli B185] gi|312967773|ref|ZP_07781988.1| dnaA regulatory inactivator Hda [Escherichia coli 2362-75] gi|312973265|ref|ZP_07787437.1| dnaA regulatory inactivator Hda [Escherichia coli 1827-70] gi|331658634|ref|ZP_08359578.1| DnaA regulatory inactivator Hda [Escherichia coli TA206] gi|331664053|ref|ZP_08364963.1| DnaA regulatory inactivator Hda [Escherichia coli TA143] gi|331669238|ref|ZP_08370086.1| DnaA regulatory inactivator Hda [Escherichia coli TA271] gi|331684138|ref|ZP_08384734.1| DnaA regulatory inactivator Hda [Escherichia coli H299] gi|187770564|gb|EDU34408.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4196] gi|189378688|gb|EDU97104.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC508] gi|194419588|gb|EDX35668.1| DnaA family protein Hda [Shigella dysenteriae 1012] gi|291433407|gb|EFF06386.1| DnaA regulatory inactivator Hda [Escherichia coli B185] gi|310331860|gb|EFP99095.1| dnaA regulatory inactivator Hda [Escherichia coli 1827-70] gi|312287970|gb|EFR15875.1| dnaA regulatory inactivator Hda [Escherichia coli 2362-75] gi|313650956|gb|EFS15356.1| dnaA regulatory inactivator Hda [Shigella flexneri 2a str. 2457T] gi|315615739|gb|EFU96371.1| dnaA regulatory inactivator Hda [Escherichia coli 3431] gi|320185194|gb|EFW59974.1| Chromosomal replication initiator protein DnaA [Shigella flexneri CDC 796-83] gi|323156100|gb|EFZ42259.1| dnaA regulatory inactivator Hda [Escherichia coli EPECa14] gi|323159349|gb|EFZ45334.1| dnaA regulatory inactivator Hda [Escherichia coli E128010] gi|323169062|gb|EFZ54739.1| dnaA regulatory inactivator Hda [Shigella sonnei 53G] gi|323170235|gb|EFZ55888.1| dnaA regulatory inactivator Hda [Escherichia coli LT-68] gi|323177383|gb|EFZ62971.1| dnaA regulatory inactivator Hda [Escherichia coli 1180] gi|323184446|gb|EFZ69821.1| dnaA regulatory inactivator Hda [Escherichia coli 1357] gi|323188212|gb|EFZ73505.1| dnaA regulatory inactivator Hda [Escherichia coli RN587/1] gi|323936388|gb|EGB32678.1| DnaA regulatory inactivator Hda [Escherichia coli E1520] gi|323941245|gb|EGB37430.1| DnaA regulatory inactivator Hda [Escherichia coli E482] gi|323944717|gb|EGB40784.1| DnaA regulatory inactivator Hda [Escherichia coli H120] gi|323949483|gb|EGB45371.1| DnaA regulatory inactivator Hda [Escherichia coli H252] gi|323955733|gb|EGB51491.1| DnaA regulatory inactivator Hda [Escherichia coli H263] gi|323961290|gb|EGB56902.1| DnaA regulatory inactivator Hda [Escherichia coli H489] gi|323967940|gb|EGB63352.1| DnaA regulatory inactivator Hda [Escherichia coli M863] gi|323970981|gb|EGB66230.1| DnaA regulatory inactivator Hda [Escherichia coli TA007] gi|323977326|gb|EGB72412.1| DnaA regulatory inactivator Hda [Escherichia coli TW10509] gi|324118160|gb|EGC12057.1| DnaA regulatory inactivator Hda [Escherichia coli E1167] gi|326344976|gb|EGD68720.1| Chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. 1044] gi|327252146|gb|EGE63818.1| dnaA regulatory inactivator Hda [Escherichia coli STEC_7v] gi|331054299|gb|EGI26326.1| DnaA regulatory inactivator Hda [Escherichia coli TA206] gi|331059852|gb|EGI31829.1| DnaA regulatory inactivator Hda [Escherichia coli TA143] gi|331064432|gb|EGI36343.1| DnaA regulatory inactivator Hda [Escherichia coli TA271] gi|331079090|gb|EGI50292.1| DnaA regulatory inactivator Hda [Escherichia coli H299] gi|332089745|gb|EGI94846.1| dnaA regulatory inactivator Hda [Shigella dysenteriae 155-74] gi|332092792|gb|EGI97861.1| dnaA regulatory inactivator Hda [Shigella boydii 3594-74] gi|332344316|gb|AEE57650.1| DNA-A regulatory inactivation protein [Escherichia coli UMNK88] gi|332755140|gb|EGJ85505.1| dnaA regulatory inactivator Hda [Shigella flexneri 4343-70] gi|332755541|gb|EGJ85905.1| dnaA regulatory inactivator Hda [Shigella flexneri K-671] gi|332756537|gb|EGJ86888.1| dnaA regulatory inactivator Hda [Shigella flexneri 2747-71] gi|333001633|gb|EGK21201.1| dnaA regulatory inactivator Hda [Shigella flexneri VA-6] gi|333001784|gb|EGK21350.1| dnaA regulatory inactivator Hda [Shigella flexneri K-218] gi|333002286|gb|EGK21850.1| dnaA regulatory inactivator Hda [Shigella flexneri K-272] gi|333016108|gb|EGK35440.1| dnaA regulatory inactivator Hda [Shigella flexneri K-227] gi|333016366|gb|EGK35697.1| dnaA regulatory inactivator Hda [Shigella flexneri K-304] Length = 225 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 123 DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180 + +F + N I + + LL+T P + LPDL SRL + K+ L D+D L+ Sbjct: 106 EMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQA 165 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + ++ R + + + ++++R++R + +D++D +++ +T E+LK Sbjct: 166 LQLRARL-RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 224 >gi|167957122|ref|ZP_02544196.1| chromosomal replication initiation protein [candidate division TM7 single-cell isolate TM7c] Length = 467 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 26/136 (19%), Positives = 65/136 (47%), Gaps = 5/136 (3%) Query: 93 FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWG 152 FS+ +++D +++D ++ I + + FH N +HQ + +++++ P S Sbjct: 222 FSSKYRNVDVLIVDD-----MQFIAGKEKTQEEFFHTFNELHQNNKQIIISSDKPPKSIP 276 Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 L SR + + I +PD + ++ + + + ++ A Y+ Q ++ ++ Sbjct: 277 TLTDRLRSRFEWGMTIDIQMPDFETRCAIVEAKASLSGVELSRETAEYLAQNIKTNIREL 336 Query: 213 EKLVDKMDNLALSRGM 228 E ++++ LA RG+ Sbjct: 337 EGSLNQLLALAEMRGI 352 >gi|164427105|ref|XP_959602.2| hypothetical protein NCU02420 [Neurospora crassa OR74A] gi|157071610|gb|EAA30366.2| conserved hypothetical protein [Neurospora crassa OR74A] Length = 757 Score = 35.8 bits (81), Expect = 5.1, Method: Composition-based stats. Identities = 18/38 (47%), Positives = 26/38 (68%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P+R ++L GP G+GK+ LA + +S+ST FS A SL Sbjct: 607 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSL 644 >gi|315644300|ref|ZP_07897470.1| chromosomal replication initiation protein [Paenibacillus vortex V453] gi|315280675|gb|EFU43964.1| chromosomal replication initiation protein [Paenibacillus vortex V453] Length = 448 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 34/157 (21%), Positives = 68/157 (43%), Gaps = 11/157 (7%) Query: 88 SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTA 144 +R+ F N +S+D +LID DI L ++ + FH N++H+ +++++ Sbjct: 195 NRAESFRNKYRSVDILLID--------DIQFLAGKESTQEEFFHTFNALHEERKQIIISS 246 Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 P L SR + + I PD + ++ K + I + YI + Sbjct: 247 DRPPKEIPTLEERLRSRFEWGLITDIQPPDLETRIAILRKKAKAENLDIPNEAMMYIANQ 306 Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++ ++ E + ++ + +T LAAE LK+ Sbjct: 307 IDTNIRELEGALIRVVAYSSLTNQDVTTHLAAEALKD 343 >gi|225560859|gb|EEH09140.1| vacuolar sorting-associated protein [Ajellomyces capsulatus G186AR] Length = 843 Score = 35.8 bits (81), Expect = 5.1, Method: Composition-based stats. Identities = 19/40 (47%), Positives = 26/40 (65%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P+R ++L GP G+GK+ LA + +S ST FS A SL S Sbjct: 587 PARGMLLFGPPGTGKTMLARSVATESHSTFFSVSASSLTS 626 >gi|218548071|ref|YP_002381862.1| DNA replication initiation factor [Escherichia fergusonii ATCC 35469] gi|218355612|emb|CAQ88223.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia fergusonii ATCC 35469] gi|324112986|gb|EGC06962.1| DnaA regulatory inactivator Hda [Escherichia fergusonii B253] gi|325496474|gb|EGC94333.1| DNA replication initiation factor [Escherichia fergusonii ECD227] Length = 241 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 123 DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180 + +F + N I + + LL+T P + LPDL SRL + K+ L D+D L+ Sbjct: 122 EMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQA 181 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + ++ R + + + ++++R++R + +D++D +++ +T E+LK Sbjct: 182 LQLRARL-RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 240 >gi|212534472|ref|XP_002147392.1| AAA family ATPase, putative [Penicillium marneffei ATCC 18224] gi|210069791|gb|EEA23881.1| AAA family ATPase, putative [Penicillium marneffei ATCC 18224] Length = 842 Score = 35.8 bits (81), Expect = 5.1, Method: Composition-based stats. Identities = 18/40 (45%), Positives = 27/40 (67%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P+R ++L GP G+GK+ LA + +S+ST FS A +L S Sbjct: 584 PARGMLLFGPPGTGKTMLARAVATESKSTFFSVSASTLTS 623 >gi|83767415|dbj|BAE57554.1| unnamed protein product [Aspergillus oryzae] Length = 743 Score = 35.8 bits (81), Expect = 5.1, Method: Composition-based stats. Identities = 18/40 (45%), Positives = 27/40 (67%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P+R ++L GP G+GK+ LA + +S+ST FS A +L S Sbjct: 527 PARGMLLFGPPGTGKTMLARAVATESKSTFFSVSASTLTS 566 >gi|159462584|ref|XP_001689522.1| predicted protein [Chlamydomonas reinhardtii] gi|158283510|gb|EDP09260.1| predicted protein [Chlamydomonas reinhardtii] Length = 326 Score = 35.8 bits (81), Expect = 5.2, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 10/78 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWP----------SWPSRVVILVGPSGSGKSCLANIW 84 C GI+ DD+ A ++ V+ + WP P R ++L GP G+GK+ + Sbjct: 24 CGGITWDDIAGQDAAKRLVQEMVVWPMLNPQLFTGARAPPRGLLLFGPPGTGKTLIGKAV 83 Query: 85 SDKSRSTRFSNIAKSLDS 102 + +T FS A SL S Sbjct: 84 AANICATFFSISASSLTS 101 >gi|158297524|ref|XP_317746.4| AGAP007769-PA [Anopheles gambiae str. PEST] gi|157015237|gb|EAA12156.5| AGAP007769-PA [Anopheles gambiae str. PEST] Length = 341 Score = 35.8 bits (81), Expect = 5.2, Method: Compositional matrix adjust. Identities = 17/40 (42%), Positives = 25/40 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P R ++L GP G+GK+ + + +S+ST FS A SL S Sbjct: 99 PPRGILLFGPPGTGKTLIGKCIASQSKSTFFSISASSLTS 138 >gi|325089147|gb|EGC42457.1| vacuolar sorting protein [Ajellomyces capsulatus H88] Length = 835 Score = 35.8 bits (81), Expect = 5.2, Method: Composition-based stats. Identities = 19/40 (47%), Positives = 26/40 (65%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P+R ++L GP G+GK+ LA + +S ST FS A SL S Sbjct: 579 PARGMLLFGPPGTGKTMLARSVATESHSTFFSVSASSLTS 618 >gi|154277946|ref|XP_001539803.1| hypothetical protein HCAG_05270 [Ajellomyces capsulatus NAm1] gi|150413388|gb|EDN08771.1| hypothetical protein HCAG_05270 [Ajellomyces capsulatus NAm1] Length = 843 Score = 35.8 bits (81), Expect = 5.2, Method: Composition-based stats. Identities = 19/40 (47%), Positives = 26/40 (65%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P+R ++L GP G+GK+ LA + +S ST FS A SL S Sbjct: 587 PARGMLLFGPPGTGKTMLARSVATESHSTFFSVSASSLTS 626 >gi|304405889|ref|ZP_07387547.1| chromosomal replication initiator protein DnaA [Paenibacillus curdlanolyticus YK9] gi|304345132|gb|EFM10968.1| chromosomal replication initiator protein DnaA [Paenibacillus curdlanolyticus YK9] Length = 448 Score = 35.8 bits (81), Expect = 5.3, Method: Compositional matrix adjust. Identities = 34/157 (21%), Positives = 66/157 (42%), Gaps = 11/157 (7%) Query: 88 SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTA 144 +R F N +++D +LID DI L D + FH N++H+ +++++ Sbjct: 195 NRGESFRNKYRNIDVLLID--------DIQFLAGKDGTQEEFFHTFNALHEERKQIIISS 246 Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 P L SR + + I PD + ++ K + I + YI + Sbjct: 247 DRTPKEIPTLEERLRSRFEWGLITDIQAPDLETRIAILRKKAKAENLEIPNEAMVYIANQ 306 Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++ ++ E + ++ + I+ LAAE LK+ Sbjct: 307 IDTNIRELEGALIRVVAYSSLINEDISSHLAAEALKD 343 >gi|300981824|ref|ZP_07175756.1| DnaA regulatory inactivator Hda [Escherichia coli MS 45-1] gi|300408901|gb|EFJ92439.1| DnaA regulatory inactivator Hda [Escherichia coli MS 45-1] Length = 256 Score = 35.8 bits (81), Expect = 5.3, Method: Compositional matrix adjust. Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 123 DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180 + +F + N I + + LL+T P + LPDL SRL + K+ L D+D L+ Sbjct: 137 EMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQA 196 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + ++ R + + + ++++R++R + +D++D +++ +T E+LK Sbjct: 197 LQLRARL-RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 255 >gi|319762113|ref|YP_004126050.1| dnaa regulatory inactivator hda [Alicycliphilus denitrificans BC] gi|330826056|ref|YP_004389359.1| DnaA regulatory inactivator Hda [Alicycliphilus denitrificans K601] gi|317116674|gb|ADU99162.1| DnaA regulatory inactivator Hda [Alicycliphilus denitrificans BC] gi|329311428|gb|AEB85843.1| DnaA regulatory inactivator Hda [Alicycliphilus denitrificans K601] Length = 235 Score = 35.8 bits (81), Expect = 5.4, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 43/84 (51%) Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216 DL SRL V ++ L D+ V+ + R +F+ ++ Y+++R R L +L+ Sbjct: 150 DLRSRLGWGHVFQLHLLDEPARRAVLRQEADARGVFLGDEVMDYMLKRFSRDLGSLVQLL 209 Query: 217 DKMDNLALSRGMGITRSLAAEVLK 240 D++D+ AL IT L +L+ Sbjct: 210 DRLDSFALRTQRAITIPLLKTMLE 233 >gi|240280590|gb|EER44094.1| vacuolar sorting protein [Ajellomyces capsulatus H143] Length = 806 Score = 35.8 bits (81), Expect = 5.4, Method: Composition-based stats. Identities = 19/40 (47%), Positives = 26/40 (65%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P+R ++L GP G+GK+ LA + +S ST FS A SL S Sbjct: 550 PARGMLLFGPPGTGKTMLARSVATESHSTFFSVSASSLTS 589 >gi|224108347|ref|XP_002314815.1| white-brown-complex ABC transporter family [Populus trichocarpa] gi|222863855|gb|EEF00986.1| white-brown-complex ABC transporter family [Populus trichocarpa] Length = 660 Score = 35.8 bits (81), Expect = 5.4, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 6/88 (6%) Query: 3 LMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLI---DSW 59 LM +D S PD +KND + + FP + S + ++VR + S Sbjct: 25 LMPDDES---PDDEKNDAADDDSPDVGKVFPVTIRWSNITCSLSDKSSKSVRFLLNNVSG 81 Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDK 87 + P R++ ++GPSGSGK+ L N+ + + Sbjct: 82 EAKPGRLLAIMGPSGSGKTTLLNVLAGQ 109 >gi|71424343|ref|XP_812762.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|71650858|ref|XP_814118.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70877582|gb|EAN90911.1| hypothetical protein, conserved [Trypanosoma cruzi] gi|70879064|gb|EAN92267.1| hypothetical protein, conserved [Trypanosoma cruzi] gi|322829261|gb|EFZ32725.1| hypothetical protein TCSYLVIO_922 [Trypanosoma cruzi] Length = 281 Score = 35.8 bits (81), Expect = 5.4, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 8/57 (14%) Query: 67 VILVGPSGSGKSCLANI----WSDKSRSTRFSNIAKSLDSIL----IDTRKPVLLED 115 V+++GP+GSGKS L + ++ K RST N + + + ID R+ + LED Sbjct: 6 VVVIGPAGSGKSTLCTVVAEHYATKGRSTHICNFDPAAEDLPYDPSIDIRELISLED 62 >gi|169622581|ref|XP_001804699.1| hypothetical protein SNOG_14515 [Phaeosphaeria nodorum SN15] gi|111056935|gb|EAT78055.1| hypothetical protein SNOG_14515 [Phaeosphaeria nodorum SN15] Length = 825 Score = 35.8 bits (81), Expect = 5.5, Method: Composition-based stats. Identities = 18/40 (45%), Positives = 27/40 (67%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P+R ++L GP G+GK+ LA + +S+ST F+ A SL S Sbjct: 569 PARGMLLFGPPGTGKTMLARAVATESKSTFFAISASSLTS 608 >gi|227831831|ref|YP_002833538.1| chromosomal replication initiator protein [Corynebacterium aurimucosum ATCC 700975] gi|262183095|ref|ZP_06042516.1| chromosomal replication initiation protein [Corynebacterium aurimucosum ATCC 700975] gi|254777897|sp|C3PE72|DNAA_CORA7 RecName: Full=Chromosomal replication initiator protein DnaA gi|227452847|gb|ACP31600.1| chromosomal replication initiator protein [Corynebacterium aurimucosum ATCC 700975] Length = 546 Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust. Identities = 25/124 (20%), Positives = 54/124 (43%), Gaps = 11/124 (8%) Query: 89 RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTAR 145 R F ++LD +++D DI L+ ++ + FH N++HQ + +++++ Sbjct: 292 RQESFKRRYRNLDILMVD--------DIQFLEGKESTQEEFFHTFNALHQANKQIILSSD 343 Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 P L +R + + I PD + +++K + +D+ + I R Sbjct: 344 RPPKQLTTLEDRLRTRFEGGLITDIQPPDLETRIAILMKKASADGTDVDRSVLELIASRF 403 Query: 206 ERSL 209 E S+ Sbjct: 404 ESSI 407 >gi|320588326|gb|EFX00795.1| aaa family ATPase [Grosmannia clavigera kw1407] Length = 846 Score = 35.8 bits (81), Expect = 5.6, Method: Composition-based stats. Identities = 19/40 (47%), Positives = 26/40 (65%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P+ ++L GP G+GK+ LA + +SRST FS A SL S Sbjct: 591 PATGMLLFGPPGTGKTMLARAVATESRSTFFSISASSLTS 630 >gi|242790258|ref|XP_002481526.1| AAA family ATPase, putative [Talaromyces stipitatus ATCC 10500] gi|218718114|gb|EED17534.1| AAA family ATPase, putative [Talaromyces stipitatus ATCC 10500] Length = 842 Score = 35.8 bits (81), Expect = 5.6, Method: Composition-based stats. Identities = 18/40 (45%), Positives = 27/40 (67%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P+R ++L GP G+GK+ LA + +S+ST FS A +L S Sbjct: 584 PARGMLLFGPPGTGKTMLARAVATESKSTFFSVSASTLTS 623 >gi|332971204|gb|EGK10167.1| DNA-directed DNA replication initiator protein DnaA [Desmospora sp. 8437] Length = 460 Score = 35.8 bits (81), Expect = 5.6, Method: Compositional matrix adjust. Identities = 39/161 (24%), Positives = 70/161 (43%), Gaps = 18/161 (11%) Query: 88 SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTA 144 +R+ F N +++D +LID DI L + + FH N++H +++++ Sbjct: 206 NRADDFRNRYRNVDILLID--------DIQFLAGKEQTQEEFFHTFNALHGESKQIVISS 257 Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV----KMFADRQIFIDKKLAAY 200 P + L SR + + I PD LE I K AD + ++ A+ Sbjct: 258 DRPPKAIPTLEDRLRSRFEWGLITDIQPPD---LETRIAILRKKAIADNLEINNSEVMAF 314 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 I R+E ++ E + ++ + +T LAAE LK+ Sbjct: 315 IADRVETNIRELEGALIRVVAYSALTNQPVTVELAAEALKD 355 >gi|300922203|ref|ZP_07138339.1| DnaA regulatory inactivator Hda [Escherichia coli MS 182-1] gi|300421442|gb|EFK04753.1| DnaA regulatory inactivator Hda [Escherichia coli MS 182-1] gi|324020097|gb|EGB89316.1| DnaA regulatory inactivator Hda [Escherichia coli MS 117-3] Length = 257 Score = 35.8 bits (81), Expect = 5.6, Method: Compositional matrix adjust. Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 123 DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180 + +F + N I + + LL+T P + LPDL SRL + K+ L D+D L+ Sbjct: 138 EMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQA 197 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + ++ R + + + ++++R++R + +D++D +++ +T E+LK Sbjct: 198 LQLRARL-RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 256 >gi|116070875|ref|ZP_01468144.1| chromosomal replication initiation protein [Synechococcus sp. BL107] gi|116066280|gb|EAU72037.1| chromosomal replication initiation protein [Synechococcus sp. BL107] Length = 474 Score = 35.8 bits (81), Expect = 5.6, Method: Compositional matrix adjust. Identities = 30/152 (19%), Positives = 63/152 (41%), Gaps = 5/152 (3%) Query: 93 FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWG 152 F + ++ D IL+D ++ I+ ++ + FH N++H+ +++ + P Sbjct: 225 FRDRYRAADLILVDD-----IQFIEGKEYTQEEFFHTFNALHEAGRQVVIASDRPPSQIP 279 Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 L SR + + I PD + ++ K ++ + + L YI R ++ Sbjct: 280 RLQQRLISRFQMGLIADIQSPDLETRMAILQKKAEQERMALPRDLIQYIAGRFTSNIREL 339 Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 E + + A G+ +T A +L T Q Sbjct: 340 EGALTRAVAFASITGLPMTVESVAPMLDPTGQ 371 >gi|56459113|ref|YP_154394.1| DNA replication initiation ATPase [Idiomarina loihiensis L2TR] gi|61212492|sp|Q5QY39|DNAA_IDILO RecName: Full=Chromosomal replication initiator protein DnaA gi|56178123|gb|AAV80845.1| ATPase involved in DNA replication initiation [Idiomarina loihiensis L2TR] Length = 454 Score = 35.8 bits (81), Expect = 5.6, Method: Compositional matrix adjust. Identities = 32/158 (20%), Positives = 72/158 (45%), Gaps = 13/158 (8%) Query: 88 SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTA 144 S + F +S+D++LID DI + + FH N++ + + ++MT+ Sbjct: 204 SSTNEFKRYYRSVDALLID--------DIHFFANKKGSQEEFFHTFNALLEGNQQIIMTS 255 Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 +P L SR + I P+ + ++++ +R + + ++A +I +R Sbjct: 256 DLYPKEIDGVEDRLKSRFGWGLTIAIEPPELETRVAILMRKADERGLHMPHEVAFFIAKR 315 Query: 205 MERSLVFAEKLVDK-MDNLALSRGMGITRSLAAEVLKE 241 + ++ E +++ + N+ L+ G IT E L++ Sbjct: 316 LRSNVRELEGALNRVVANVQLT-GRPITIDFVREALRD 352 >gi|257865352|ref|ZP_05645005.1| GGDEF domain-containing protein [Enterococcus casseliflavus EC30] gi|257871682|ref|ZP_05651335.1| GGDEF domain-containing protein [Enterococcus casseliflavus EC10] gi|257799286|gb|EEV28338.1| GGDEF domain-containing protein [Enterococcus casseliflavus EC30] gi|257805846|gb|EEV34668.1| GGDEF domain-containing protein [Enterococcus casseliflavus EC10] Length = 350 Score = 35.8 bits (81), Expect = 5.7, Method: Compositional matrix adjust. Identities = 13/51 (25%), Positives = 36/51 (70%) Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 D + AAY+++++++ + + E ++D D+++++ +GI + E+L++TQ+ Sbjct: 280 DAQAAAYLLEKIQKRIRYQEIILDAGDSVSITLSIGIAQRQKGELLQQTQE 330 >gi|255323604|ref|ZP_05364734.1| chromosomal replication initiator protein DnaA [Campylobacter showae RM3277] gi|255299318|gb|EET78605.1| chromosomal replication initiator protein DnaA [Campylobacter showae RM3277] Length = 436 Score = 35.8 bits (81), Expect = 5.7, Method: Compositional matrix adjust. Identities = 35/153 (22%), Positives = 63/153 (41%), Gaps = 11/153 (7%) Query: 92 RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFP 148 RF ++ D +LID D+ L D + FH N +H + ++MT+ P Sbjct: 188 RFREKYRNCDVLLID--------DVQFLGKTDKIQEEFFHTFNELHAKNGQIVMTSDRQP 239 Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 L +R + + I+ P+ D +I K +I++DK + YI M + Sbjct: 240 KLLKGFEDRLRTRFEWGIIADITPPELDTKIAIIKKKCEFDKIYLDKDVINYIATNMGDN 299 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + E + ++ A IT A +L++ Sbjct: 300 IREIESAIINLNAYARLMRQEITLEFAKNILRD 332 >gi|192359033|ref|YP_001980525.1| chromosomal replication initiation protein [Cellvibrio japonicus Ueda107] gi|190685198|gb|ACE82876.1| chromosomal replication initiator protein DnaA [Cellvibrio japonicus Ueda107] Length = 534 Score = 35.8 bits (81), Expect = 5.7, Method: Compositional matrix adjust. Identities = 34/152 (22%), Positives = 62/152 (40%), Gaps = 11/152 (7%) Query: 93 FSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPV 149 F +S+D++LID DI + + + FH NS+ + +++T FP Sbjct: 289 FKRYYRSMDALLID--------DIQFFAGKERSQEEFFHTFNSLLEGGRQIILTCDRFPK 340 Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209 L SR V + P+ + +++K I + + A +I QR+ ++ Sbjct: 341 EINGLEERLKSRFGWGLTVAVEPPELETRVAILIKKAEQANIDLPHEAAFFIAQRIRANV 400 Query: 210 VFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 E + ++ A G I L E LK+ Sbjct: 401 RDLEGALKRVIASANFTGRSIDVELVREALKD 432 >gi|159897963|ref|YP_001544210.1| ATPase central domain-containing protein [Herpetosiphon aurantiacus ATCC 23779] gi|159891002|gb|ABX04082.1| AAA ATPase central domain protein [Herpetosiphon aurantiacus ATCC 23779] Length = 416 Score = 35.8 bits (81), Expect = 5.7, Method: Compositional matrix adjust. Identities = 43/182 (23%), Positives = 72/182 (39%), Gaps = 48/182 (26%) Query: 24 KEEQLFFSFPRCLGISRDDLLVHSAIEQAV-----RLIDSWPSWPS------RVVILVGP 72 K ++L+++ S D+L++ ++Q + R +S ++ R +ILVGP Sbjct: 152 KSQELYYAIKNA---SLDNLILPGTLKQDIFRDLQRFFESKATYEHYNIAWKRGIILVGP 208 Query: 73 SGSGKS-------------CLANIWSDKSRSTRFSNIA----------------KSLDSI 103 G+GK+ CL D ST +NI + LDS+ Sbjct: 209 PGNGKTHMIKGLLNALDYPCLYVKSFDAQYSTNNANIRAVFDRARRSAPCIVVLEDLDSL 268 Query: 104 LIDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 + DT + L ++D FN Q L N D +++ F + LP+L Sbjct: 269 INDTNRAFFLNEVD--GFNANQGVVLLATTNHPEDIDPAIMNRPSRFDRKYYFSLPELAE 326 Query: 161 RL 162 RL Sbjct: 327 RL 328 >gi|257874944|ref|ZP_05654597.1| GGDEF domain-containing protein [Enterococcus casseliflavus EC20] gi|257809110|gb|EEV37930.1| GGDEF domain-containing protein [Enterococcus casseliflavus EC20] Length = 350 Score = 35.8 bits (81), Expect = 5.7, Method: Compositional matrix adjust. Identities = 13/51 (25%), Positives = 36/51 (70%) Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 D + AAY+++++++ + + E ++D D+++++ +GI + E+L++TQ+ Sbjct: 280 DAQAAAYLLEKIQKRIRYQEIILDAGDSVSITLSIGIAQRQKGELLQQTQE 330 >gi|225021815|ref|ZP_03711007.1| hypothetical protein CORMATOL_01845 [Corynebacterium matruchotii ATCC 33806] gi|224945511|gb|EEG26720.1| hypothetical protein CORMATOL_01845 [Corynebacterium matruchotii ATCC 33806] Length = 566 Score = 35.8 bits (81), Expect = 5.7, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 16/73 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + LVGPSGSGKS LA + + RF ++A+ SI +D+ D Sbjct: 351 PGTITALVGPSGSGKSTLAKLLA------RFYDVAEGTISI----------AGVDVRDIA 394 Query: 123 DTQLFHIINSIHQ 135 +L+ I + Q Sbjct: 395 TDELYRTIGMVFQ 407 >gi|329119305|ref|ZP_08247992.1| DnaA regulatory inactivator Hda [Neisseria bacilliformis ATCC BAA-1200] gi|327464652|gb|EGF10950.1| DnaA regulatory inactivator Hda [Neisseria bacilliformis ATCC BAA-1200] Length = 222 Score = 35.8 bits (81), Expect = 5.8, Method: Compositional matrix adjust. Identities = 38/168 (22%), Positives = 67/168 (39%), Gaps = 12/168 (7%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123 R V + G +G+GKS L W+ ++ R A+ +D+ + L + +D D Sbjct: 36 ERFVYVWGAAGTGKSHLLRAWA--GQAARQGADARYIDAKTMPLDASALEAEYLAVDQAD 93 Query: 124 -------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 LF I N L+ + P + DL +R+ V I D+ Sbjct: 94 RLKPAEQALLFEIFNRFRNSGRGRLLLSADLPPAQLAVREDLRTRMGYCLVYDIKPLSDE 153 Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 + M RQ+ +D+ + Y++ +R + + LV +D L L Sbjct: 154 EKIAALTGMARARQLDLDEGIFRYLLNYWQRDM---DSLVKMLDTLCL 198 >gi|312218275|emb|CBX98221.1| hypothetical protein [Leptosphaeria maculans] Length = 803 Score = 35.8 bits (81), Expect = 5.8, Method: Composition-based stats. Identities = 18/40 (45%), Positives = 27/40 (67%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P+R ++L GP G+GK+ LA + +S+ST F+ A SL S Sbjct: 548 PARGMLLFGPPGTGKTMLARAVATESKSTFFAISASSLTS 587 >gi|300903508|ref|ZP_07121433.1| DnaA regulatory inactivator Hda [Escherichia coli MS 84-1] gi|300930133|ref|ZP_07145555.1| DnaA regulatory inactivator Hda [Escherichia coli MS 187-1] gi|300404540|gb|EFJ88078.1| DnaA regulatory inactivator Hda [Escherichia coli MS 84-1] gi|300461977|gb|EFK25470.1| DnaA regulatory inactivator Hda [Escherichia coli MS 187-1] gi|315300454|gb|EFU59684.1| DnaA regulatory inactivator Hda [Escherichia coli MS 16-3] Length = 255 Score = 35.8 bits (81), Expect = 5.8, Method: Compositional matrix adjust. Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 123 DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180 + +F + N I + + LL+T P + LPDL SRL + K+ L D+D L+ Sbjct: 136 EMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQA 195 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + ++ R + + + ++++R++R + +D++D +++ +T E+LK Sbjct: 196 LQLRARL-RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 254 >gi|300951801|ref|ZP_07165615.1| DnaA regulatory inactivator Hda [Escherichia coli MS 116-1] gi|301024719|ref|ZP_07188362.1| DnaA regulatory inactivator Hda [Escherichia coli MS 69-1] gi|300396450|gb|EFJ79988.1| DnaA regulatory inactivator Hda [Escherichia coli MS 69-1] gi|300448964|gb|EFK12584.1| DnaA regulatory inactivator Hda [Escherichia coli MS 116-1] Length = 256 Score = 35.8 bits (81), Expect = 5.9, Method: Compositional matrix adjust. Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 123 DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180 + +F + N I + + LL+T P + LPDL SRL + K+ L D+D L+ Sbjct: 137 EMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQA 196 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + ++ R + + + ++++R++R + +D++D +++ +T E+LK Sbjct: 197 LQLRARL-RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 255 >gi|156050767|ref|XP_001591345.1| hypothetical protein SS1G_07971 [Sclerotinia sclerotiorum 1980] gi|154692371|gb|EDN92109.1| hypothetical protein SS1G_07971 [Sclerotinia sclerotiorum 1980 UF-70] Length = 750 Score = 35.8 bits (81), Expect = 5.9, Method: Composition-based stats. Identities = 18/38 (47%), Positives = 26/38 (68%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P+R ++L GP G+GK+ LA + +S+ST FS A SL Sbjct: 639 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSL 676 >gi|313205512|ref|YP_004044689.1| chromosomal replication initiator protein dnaa [Riemerella anatipestifer DSM 15868] gi|312444828|gb|ADQ81183.1| chromosomal replication initiator protein DnaA [Riemerella anatipestifer DSM 15868] gi|315023384|gb|EFT36394.1| Chromosomal replication initiator protein dnaA [Riemerella anatipestifer RA-YM] gi|325335056|gb|ADZ11330.1| DnaA [Riemerella anatipestifer RA-GD] Length = 492 Score = 35.8 bits (81), Expect = 6.0, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 12/110 (10%) Query: 77 KSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN-DTQ--LFHIINSI 133 K+ +N + SR F+N K LD +++D DI L TQ FHI + + Sbjct: 232 KAANSNRGNANSRED-FANFYKMLDVLIVD--------DIQFLSGKRATQDSFFHIFDYL 282 Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 HQ +++T+ P + SR K +I PD D K+IV Sbjct: 283 HQNGKQIILTSDKAPADIMDIEERVVSRFKWGLTAEIKSPDYDTRRKIIV 332 >gi|47525234|ref|YP_016331.1| chromosomal replication initiation protein [Geobacter sulfurreducens PCA] gi|61212658|sp|Q74GG6|DNAA_GEOSL RecName: Full=Chromosomal replication initiator protein DnaA gi|41152665|gb|AAR99581.1| chromosomal replication initiator protein DnaA [Geobacter sulfurreducens PCA] gi|298504141|gb|ADI82864.1| chromosomal replication initiator protein DnaA [Geobacter sulfurreducens KN400] Length = 445 Score = 35.8 bits (81), Expect = 6.0, Method: Compositional matrix adjust. Identities = 33/153 (21%), Positives = 66/153 (43%), Gaps = 11/153 (7%) Query: 92 RFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFP 148 +F N + +D +LID DI + + + FH NS+++ +++T+ FP Sbjct: 199 QFRNKFRKMDILLID--------DIQFIAGKERTQEEFFHTFNSLYESHKQIVVTSDKFP 250 Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 L SR + + I PD + ++ K I + +A ++ + Sbjct: 251 KDIPGLEERLRSRFEWGLIADIQAPDTETKVAILRKKADADHISLPDDVALFLASSSTTN 310 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + E ++ ++ ++ G IT +A EVLK+ Sbjct: 311 VRELEGMLIRLGAVSSLTGKNITLDMAREVLKD 343 >gi|315053797|ref|XP_003176273.1| hypothetical protein MGYG_00361 [Arthroderma gypseum CBS 118893] gi|311338119|gb|EFQ97321.1| hypothetical protein MGYG_00361 [Arthroderma gypseum CBS 118893] Length = 833 Score = 35.8 bits (81), Expect = 6.0, Method: Compositional matrix adjust. Identities = 19/40 (47%), Positives = 27/40 (67%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P+R ++L GP G+GK+ LA + +S+ST FS A SL S Sbjct: 577 PARGMLLFGPPGTGKTMLARAVATESQSTFFSVSASSLAS 616 >gi|33152000|ref|NP_873353.1| chromosomal replication initiator protein [Haemophilus ducreyi 35000HP] gi|61212729|sp|Q7VMW1|DNAA_HAEDU RecName: Full=Chromosomal replication initiator protein DnaA gi|33148222|gb|AAP95742.1| chromosomal replication initiator protein [Haemophilus ducreyi 35000HP] Length = 448 Score = 35.8 bits (81), Expect = 6.0, Method: Compositional matrix adjust. Identities = 25/130 (19%), Positives = 60/130 (46%), Gaps = 11/130 (8%) Query: 93 FSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPV 149 F +SLD ++ID DI + + + FH NS+ + + +++ + FP Sbjct: 203 FKKFYRSLDVLMID--------DIQFFAKKEASQEEFFHTFNSLFERNKQIILASDHFPK 254 Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209 + + SRL I P+ + +++K +R + + +++A Y+ Q++ ++ Sbjct: 255 NIENIEERIKSRLNWGVSTAIEPPELETRVAILMKKAEERNVELPEEVAFYLGQKLRTNV 314 Query: 210 VFAEKLVDKM 219 E ++++ Sbjct: 315 RELEGAINRV 324 >gi|260434926|ref|ZP_05788896.1| chromosomal replication initiator protein DnaA [Synechococcus sp. WH 8109] gi|260412800|gb|EEX06096.1| chromosomal replication initiator protein DnaA [Synechococcus sp. WH 8109] Length = 465 Score = 35.8 bits (81), Expect = 6.1, Method: Compositional matrix adjust. Identities = 30/152 (19%), Positives = 63/152 (41%), Gaps = 5/152 (3%) Query: 93 FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWG 152 F + ++ D IL+D ++ I+ ++ + FH N++H+ +++ + P Sbjct: 216 FRDRYRAADLILVDD-----IQFIEGKEYTQEEFFHTFNALHEAGRQVVIASDRPPSQIP 270 Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 L SR + + I PD + ++ K ++ + + L YI R ++ Sbjct: 271 RLQQRLISRFQMGLIADIQSPDLETRMAILQKKAEQERMSLPRDLIQYIAGRFTSNIREL 330 Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 E + + A G+ +T A +L T Q Sbjct: 331 EGALTRAVAFASITGLPMTVESVAPMLDPTGQ 362 >gi|238021029|ref|ZP_04601455.1| hypothetical protein GCWU000324_00926 [Kingella oralis ATCC 51147] gi|237868009|gb|EEP69015.1| hypothetical protein GCWU000324_00926 [Kingella oralis ATCC 51147] Length = 223 Score = 35.8 bits (81), Expect = 6.1, Method: Compositional matrix adjust. Identities = 39/189 (20%), Positives = 74/189 (39%), Gaps = 19/189 (10%) Query: 65 RVVILVGPSGSGKSCLANIWSDKS------------RSTRFSNIAKSLDSILIDTRKPVL 112 + + + G GSGKS + W ++ +T ++ A D + ID Sbjct: 37 QFLYIWGEQGSGKSHILQAWVGQALQNWQTAVYIDAGTTPLTDSAVQADFVAIDQ----- 91 Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +E ++ D LF+I N L+ + P S DL +R+ ++ Sbjct: 92 IEKLN--DAEQATLFYIFNHFRNSKHGHLLLSADTPPSKLHLREDLRTRMAYCLAYEVKS 149 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232 + + M RQ+ ID + Y++ + L + + + N ++S+G IT Sbjct: 150 LSREEKITALTNMAKTRQLNIDPGIYQYLLDHWRQDLGSLITMFNDLANYSISQGKPITL 209 Query: 233 SLAAEVLKE 241 L +LK+ Sbjct: 210 PLLRRLLKQ 218 >gi|82777875|ref|YP_404224.1| DNA replication initiation factor [Shigella dysenteriae Sd197] gi|81242023|gb|ABB62733.1| putative DNA replication factor [Shigella dysenteriae Sd197] Length = 248 Score = 35.8 bits (81), Expect = 6.1, Method: Compositional matrix adjust. Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 123 DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180 + +F + N I + + LL+T P + LPDL SRL + K+ L D+D L+ Sbjct: 129 EMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQA 188 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + ++ R + + + ++++R++R + +D++D +++ +T E+LK Sbjct: 189 LQLRARL-RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 247 >gi|15803019|ref|NP_289049.1| DNA replication initiation factor [Escherichia coli O157:H7 EDL933] gi|15832612|ref|NP_311385.1| DNA replication initiation factor [Escherichia coli O157:H7 str. Sakai] gi|24113824|ref|NP_708334.1| DNA replication initiation factor [Shigella flexneri 2a str. 301] gi|26248855|ref|NP_754895.1| DNA replication initiation factor [Escherichia coli CFT073] gi|30063870|ref|NP_838041.1| DNA replication initiation factor [Shigella flexneri 2a str. 2457T] gi|74313022|ref|YP_311441.1| DNA replication initiation factor [Shigella sonnei Ss046] gi|82544943|ref|YP_408890.1| DNA replication initiation factor [Shigella boydii Sb227] gi|89109302|ref|AP_003082.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia coli str. K-12 substr. W3110] gi|91211817|ref|YP_541803.1| DNA replication initiation factor [Escherichia coli UTI89] gi|110642658|ref|YP_670388.1| DNA replication initiation factor [Escherichia coli 536] gi|110806426|ref|YP_689946.1| DNA replication initiation factor [Shigella flexneri 5 str. 8401] gi|117624680|ref|YP_853593.1| DNA replication initiation factor [Escherichia coli APEC O1] gi|157158460|ref|YP_001463818.1| DNA replication initiation factor [Escherichia coli E24377A] gi|157161957|ref|YP_001459275.1| DNA replication initiation factor [Escherichia coli HS] gi|168748446|ref|ZP_02773468.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4113] gi|168756267|ref|ZP_02781274.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4401] gi|168761104|ref|ZP_02786111.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4501] gi|168768587|ref|ZP_02793594.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4486] gi|168778461|ref|ZP_02803468.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4076] gi|168787841|ref|ZP_02812848.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC869] gi|170019220|ref|YP_001724174.1| DNA replication initiation factor [Escherichia coli ATCC 8739] gi|170082106|ref|YP_001731426.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia coli str. K-12 substr. DH10B] gi|170684093|ref|YP_001744679.1| DNA replication initiation factor [Escherichia coli SMS-3-5] gi|187733723|ref|YP_001881287.1| DNA replication initiation factor [Shigella boydii CDC 3083-94] gi|188495904|ref|ZP_03003174.1| DnaA family protein Hda [Escherichia coli 53638] gi|191169203|ref|ZP_03030958.1| DnaA family protein Hda [Escherichia coli B7A] gi|191172946|ref|ZP_03034481.1| DnaA family protein Hda [Escherichia coli F11] gi|193064697|ref|ZP_03045775.1| DnaA family protein Hda [Escherichia coli E22] gi|193068417|ref|ZP_03049380.1| DnaA family protein Hda [Escherichia coli E110019] gi|194427342|ref|ZP_03059892.1| DnaA family protein Hda [Escherichia coli B171] gi|194437674|ref|ZP_03069770.1| DnaA family protein Hda [Escherichia coli 101-1] gi|195936639|ref|ZP_03082021.1| DNA replication initiation factor [Escherichia coli O157:H7 str. EC4024] gi|208808962|ref|ZP_03251299.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4206] gi|208813090|ref|ZP_03254419.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4045] gi|208820209|ref|ZP_03260529.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4042] gi|209400783|ref|YP_002271965.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4115] gi|209919973|ref|YP_002294057.1| DNA replication initiation factor [Escherichia coli SE11] gi|215487788|ref|YP_002330219.1| DNA replication initiation factor [Escherichia coli O127:H6 str. E2348/69] gi|217327019|ref|ZP_03443102.1| DnaA family protein Hda [Escherichia coli O157:H7 str. TW14588] gi|218555021|ref|YP_002387934.1| DNA replication initiation factor [Escherichia coli IAI1] gi|218559420|ref|YP_002392333.1| DNA replication initiation factor [Escherichia coli S88] gi|218690611|ref|YP_002398823.1| DNA replication initiation factor [Escherichia coli ED1a] gi|218696123|ref|YP_002403790.1| DNA replication initiation factor [Escherichia coli 55989] gi|218700953|ref|YP_002408582.1| DNA replication initiation factor [Escherichia coli IAI39] gi|218705995|ref|YP_002413514.1| DNA replication initiation factor [Escherichia coli UMN026] gi|227887525|ref|ZP_04005330.1| DNA replication initiation protein A [Escherichia coli 83972] gi|237705002|ref|ZP_04535483.1| DNA replication initiation factor [Escherichia sp. 3_2_53FAA] gi|238901661|ref|YP_002927457.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia coli BW2952] gi|253772612|ref|YP_003035443.1| DNA replication initiation factor [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162470|ref|YP_003045578.1| DNA replication initiation factor [Escherichia coli B str. REL606] gi|254794441|ref|YP_003079278.1| DNA replication initiation factor [Escherichia coli O157:H7 str. TW14359] gi|256017356|ref|ZP_05431221.1| DNA replication initiation factor [Shigella sp. D9] gi|256021818|ref|ZP_05435683.1| DNA replication initiation factor [Escherichia sp. 4_1_40B] gi|260845126|ref|YP_003222904.1| ATPase regulatory factor Hda [Escherichia coli O103:H2 str. 12009] gi|260856590|ref|YP_003230481.1| ATPase regulatory factor Hda [Escherichia coli O26:H11 str. 11368] gi|261223071|ref|ZP_05937352.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia coli O157:H7 str. FRIK2000] gi|261259377|ref|ZP_05951910.1| ATPase regulatory factor Hda [Escherichia coli O157:H7 str. FRIK966] gi|291283716|ref|YP_003500534.1| DnaA-like protein hda [Escherichia coli O55:H7 str. CB9615] gi|300817738|ref|ZP_07097953.1| DnaA regulatory inactivator Hda [Escherichia coli MS 107-1] gi|300820837|ref|ZP_07100987.1| DnaA regulatory inactivator Hda [Escherichia coli MS 119-7] gi|300921429|ref|ZP_07137789.1| DnaA regulatory inactivator Hda [Escherichia coli MS 115-1] gi|301023882|ref|ZP_07187613.1| DnaA regulatory inactivator Hda [Escherichia coli MS 196-1] gi|301302849|ref|ZP_07208977.1| DnaA regulatory inactivator Hda [Escherichia coli MS 124-1] gi|306814438|ref|ZP_07448600.1| DNA replication initiation factor [Escherichia coli NC101] gi|307139130|ref|ZP_07498486.1| DNA replication initiation factor [Escherichia coli H736] gi|307312510|ref|ZP_07592143.1| DnaA regulatory inactivator Hda [Escherichia coli W] gi|309794460|ref|ZP_07688883.1| DnaA regulatory inactivator Hda [Escherichia coli MS 145-7] gi|331643113|ref|ZP_08344248.1| DnaA regulatory inactivator Hda [Escherichia coli H736] gi|331648141|ref|ZP_08349231.1| DnaA regulatory inactivator Hda [Escherichia coli M605] gi|331653921|ref|ZP_08354922.1| DnaA regulatory inactivator Hda [Escherichia coli M718] gi|331673947|ref|ZP_08374710.1| DnaA regulatory inactivator Hda [Escherichia coli TA280] gi|331678483|ref|ZP_08379158.1| DnaA regulatory inactivator Hda [Escherichia coli H591] gi|332278353|ref|ZP_08390766.1| DnaA family protein Hda [Shigella sp. D9] gi|12516884|gb|AAG57606.1|AE005479_4 putative DNA replication factor [Escherichia coli O157:H7 str. EDL933] gi|26109261|gb|AAN81463.1|AE016764_145 Hypothetical protein yfgE [Escherichia coli CFT073] gi|13362828|dbj|BAB36781.1| putative DNA replication factor [Escherichia coli O157:H7 str. Sakai] gi|24052912|gb|AAN44041.1| putative DNA replication factor [Shigella flexneri 2a str. 301] gi|30042125|gb|AAP17851.1| putative DNA replication factor [Shigella flexneri 2a str. 2457T] gi|73856499|gb|AAZ89206.1| putative DNA replication factor [Shigella sonnei Ss046] gi|81246354|gb|ABB67062.1| putative DNA replication factor [Shigella boydii Sb227] gi|85675427|dbj|BAA16384.2| ATPase regulatory factor involved in DnaA inactivation [Escherichia coli str. K12 substr. W3110] gi|91073391|gb|ABE08272.1| putative DNA replication factor [Escherichia coli UTI89] gi|110344250|gb|ABG70487.1| hypothetical protein YfgE [Escherichia coli 536] gi|110615974|gb|ABF04641.1| putative DNA replication factor [Shigella flexneri 5 str. 8401] gi|115513804|gb|ABJ01879.1| DNA replication initiation factor [Escherichia coli APEC O1] gi|157067637|gb|ABV06892.1| DnaA family protein Hda [Escherichia coli HS] gi|157080490|gb|ABV20198.1| DnaA family protein Hda [Escherichia coli E24377A] gi|169754148|gb|ACA76847.1| DnaA regulatory inactivator Hda [Escherichia coli ATCC 8739] gi|169889941|gb|ACB03648.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia coli str. K-12 substr. DH10B] gi|170521811|gb|ACB19989.1| DnaA family protein Hda [Escherichia coli SMS-3-5] gi|187430715|gb|ACD09989.1| DnaA family protein Hda [Shigella boydii CDC 3083-94] gi|188017019|gb|EDU55141.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4113] gi|188491103|gb|EDU66206.1| DnaA family protein Hda [Escherichia coli 53638] gi|189003293|gb|EDU72279.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4076] gi|189356555|gb|EDU74974.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4401] gi|189362259|gb|EDU80678.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4486] gi|189368411|gb|EDU86827.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4501] gi|189372386|gb|EDU90802.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC869] gi|190900748|gb|EDV60542.1| DnaA family protein Hda [Escherichia coli B7A] gi|190906810|gb|EDV66414.1| DnaA family protein Hda [Escherichia coli F11] gi|192927580|gb|EDV82196.1| DnaA family protein Hda [Escherichia coli E22] gi|192958369|gb|EDV88809.1| DnaA family protein Hda [Escherichia coli E110019] gi|194414663|gb|EDX30935.1| DnaA family protein Hda [Escherichia coli B171] gi|194423480|gb|EDX39471.1| DnaA family protein Hda [Escherichia coli 101-1] gi|208728763|gb|EDZ78364.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4206] gi|208734367|gb|EDZ83054.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4045] gi|208740332|gb|EDZ88014.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4042] gi|209162183|gb|ACI39616.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4115] gi|209763558|gb|ACI80091.1| putative DNA replication factor [Escherichia coli] gi|209763560|gb|ACI80092.1| putative DNA replication factor [Escherichia coli] gi|209763562|gb|ACI80093.1| putative DNA replication factor [Escherichia coli] gi|209763564|gb|ACI80094.1| putative DNA replication factor [Escherichia coli] gi|209763566|gb|ACI80095.1| putative DNA replication factor [Escherichia coli] gi|209913232|dbj|BAG78306.1| conserved hypothetical protein [Escherichia coli SE11] gi|215265860|emb|CAS10269.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia coli O127:H6 str. E2348/69] gi|217319386|gb|EEC27811.1| DnaA family protein Hda [Escherichia coli O157:H7 str. TW14588] gi|218352855|emb|CAU98654.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia coli 55989] gi|218361789|emb|CAQ99388.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia coli IAI1] gi|218366189|emb|CAR03935.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia coli S88] gi|218370939|emb|CAR18760.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia coli IAI39] gi|218428175|emb|CAR09089.2| ATPase regulatory factor involved in DnaA inactivation [Escherichia coli ED1a] gi|218433092|emb|CAR13987.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia coli UMN026] gi|222034204|emb|CAP76945.1| DnaA-homolog protein hda [Escherichia coli LF82] gi|226901368|gb|EEH87627.1| DNA replication initiation factor [Escherichia sp. 3_2_53FAA] gi|227835875|gb|EEJ46341.1| DNA replication initiation protein A [Escherichia coli 83972] gi|238860037|gb|ACR62035.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia coli BW2952] gi|242378094|emb|CAQ32867.1| regulator of DnaA that prevents premature reinitiation of DNA replication [Escherichia coli BL21(DE3)] gi|253323656|gb|ACT28258.1| DnaA regulatory inactivator Hda [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974371|gb|ACT40042.1| DNA replication initiation factor [Escherichia coli B str. REL606] gi|253978538|gb|ACT44208.1| DNA replication initiation factor [Escherichia coli BL21(DE3)] gi|254593841|gb|ACT73202.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia coli O157:H7 str. TW14359] gi|257755239|dbj|BAI26741.1| ATPase regulatory factor Hda [Escherichia coli O26:H11 str. 11368] gi|257760273|dbj|BAI31770.1| ATPase regulatory factor Hda [Escherichia coli O103:H2 str. 12009] gi|260448425|gb|ACX38847.1| DnaA regulatory inactivator Hda [Escherichia coli DH1] gi|281179547|dbj|BAI55877.1| conserved hypothetical protein [Escherichia coli SE15] gi|281601897|gb|ADA74881.1| DnaA-like protein hda [Shigella flexneri 2002017] gi|284922443|emb|CBG35530.1| DnaA-homolog protein [Escherichia coli 042] gi|290763589|gb|ADD57550.1| DnaA-like protein hda [Escherichia coli O55:H7 str. CB9615] gi|294493697|gb|ADE92453.1| DnaA family protein Hda [Escherichia coli IHE3034] gi|299880636|gb|EFI88847.1| DnaA regulatory inactivator Hda [Escherichia coli MS 196-1] gi|300411663|gb|EFJ94973.1| DnaA regulatory inactivator Hda [Escherichia coli MS 115-1] gi|300526590|gb|EFK47659.1| DnaA regulatory inactivator Hda [Escherichia coli MS 119-7] gi|300529726|gb|EFK50788.1| DnaA regulatory inactivator Hda [Escherichia coli MS 107-1] gi|300841784|gb|EFK69544.1| DnaA regulatory inactivator Hda [Escherichia coli MS 124-1] gi|305851832|gb|EFM52284.1| DNA replication initiation factor [Escherichia coli NC101] gi|306907433|gb|EFN37937.1| DnaA regulatory inactivator Hda [Escherichia coli W] gi|307554516|gb|ADN47291.1| DnaA family protein Hda [Escherichia coli ABU 83972] gi|307625952|gb|ADN70256.1| DNA replication initiation factor [Escherichia coli UM146] gi|308121916|gb|EFO59178.1| DnaA regulatory inactivator Hda [Escherichia coli MS 145-7] gi|309702774|emb|CBJ02105.1| DnaA-homolog protein [Escherichia coli ETEC H10407] gi|312947069|gb|ADR27896.1| DNA replication initiation factor [Escherichia coli O83:H1 str. NRG 857C] gi|315061814|gb|ADT76141.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia coli W] gi|315137119|dbj|BAJ44278.1| DnaA-like protein hda [Escherichia coli DH1] gi|315256513|gb|EFU36481.1| DnaA regulatory inactivator Hda [Escherichia coli MS 85-1] gi|320176256|gb|EFW51317.1| Chromosomal replication initiator protein DnaA [Shigella dysenteriae CDC 74-1112] gi|320180482|gb|EFW55413.1| Chromosomal replication initiator protein DnaA [Shigella boydii ATCC 9905] gi|320188828|gb|EFW63487.1| Chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC1212] gi|320196328|gb|EFW70952.1| Chromosomal replication initiator protein DnaA [Escherichia coli WV_060327] gi|320200057|gb|EFW74646.1| Chromosomal replication initiator protein DnaA [Escherichia coli EC4100B] gi|320641000|gb|EFX10484.1| DNA replication initiation factor [Escherichia coli O157:H7 str. G5101] gi|320646282|gb|EFX15209.1| DNA replication initiation factor [Escherichia coli O157:H- str. 493-89] gi|320651787|gb|EFX20167.1| DNA replication initiation factor [Escherichia coli O157:H- str. H 2687] gi|320657173|gb|EFX24982.1| DNA replication initiation factor [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662779|gb|EFX30111.1| DNA replication initiation factor [Escherichia coli O55:H7 str. USDA 5905] gi|320667583|gb|EFX34498.1| DNA replication initiation factor [Escherichia coli O157:H7 str. LSU-61] gi|323377605|gb|ADX49873.1| DnaA regulatory inactivator Hda [Escherichia coli KO11] gi|326340291|gb|EGD64095.1| Chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. 1125] gi|330912266|gb|EGH40776.1| chromosomal replication initiator protein DnaA [Escherichia coli AA86] gi|331039911|gb|EGI12131.1| DnaA regulatory inactivator Hda [Escherichia coli H736] gi|331043001|gb|EGI15141.1| DnaA regulatory inactivator Hda [Escherichia coli M605] gi|331048770|gb|EGI20846.1| DnaA regulatory inactivator Hda [Escherichia coli M718] gi|331069220|gb|EGI40612.1| DnaA regulatory inactivator Hda [Escherichia coli TA280] gi|331074943|gb|EGI46263.1| DnaA regulatory inactivator Hda [Escherichia coli H591] gi|332100705|gb|EGJ04051.1| DnaA family protein Hda [Shigella sp. D9] gi|332766306|gb|EGJ96516.1| dnaA regulatory inactivator Hda [Shigella flexneri 2930-71] Length = 248 Score = 35.8 bits (81), Expect = 6.1, Method: Compositional matrix adjust. Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 123 DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180 + +F + N I + + LL+T P + LPDL SRL + K+ L D+D L+ Sbjct: 129 EMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQA 188 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + ++ R + + + ++++R++R + +D++D +++ +T E+LK Sbjct: 189 LQLRARL-RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 247 >gi|320449107|ref|YP_004201203.1| chromosomal replication initiator protein DnaA [Thermus scotoductus SA-01] gi|320149276|gb|ADW20654.1| chromosomal replication initiator protein DnaA [Thermus scotoductus SA-01] Length = 447 Score = 35.8 bits (81), Expect = 6.1, Method: Compositional matrix adjust. Identities = 37/157 (23%), Positives = 73/157 (46%), Gaps = 17/157 (10%) Query: 89 RSTRFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTAR 145 R T F +S+D +L+D DI + + + FH N++++ +++++ Sbjct: 199 RMTEFRERYRSVDLLLVD--------DIQFIAGKERTQEEFFHTFNALYEAHKQIILSSD 250 Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK--VIVKMFAD-RQIFIDKKLAAYIV 202 P L SR + + I PD LE I+KM A+ R + I +++ YI Sbjct: 251 RPPKDILTLEARLRSRFEWGLITDIQPPD---LETRIAILKMNAEQRGLRISEEVLEYIA 307 Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 +++ ++ E + + A G+ +TR++AA+ L Sbjct: 308 RQVTSNIRELEGALMRTIAYASLNGVELTRAVAAKAL 344 >gi|317049103|ref|YP_004116751.1| DnaA regulatory inactivator Hda [Pantoea sp. At-9b] gi|316950720|gb|ADU70195.1| DnaA regulatory inactivator Hda [Pantoea sp. At-9b] Length = 235 Score = 35.8 bits (81), Expect = 6.1, Method: Compositional matrix adjust. Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Query: 123 DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180 + +F + N I + + LL+T P + LPDL SRL + ++ L DDD L+ Sbjct: 116 EMAIFDLYNRILEIGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYRLQPLSDDDKLQA 175 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + ++ R + + + ++++R++R + +D++D ++S +T E L Sbjct: 176 MQLRA-GIRGFELPEDVGRFLLKRLDREMRTLFDTLDRLDRASISAQRKLTIPFVKEAL 233 >gi|149378301|ref|ZP_01896010.1| ABC transporter related protein [Marinobacter algicola DG893] gi|149357408|gb|EDM45921.1| ABC transporter related protein [Marinobacter algicola DG893] Length = 274 Score = 35.8 bits (81), Expect = 6.1, Method: Compositional matrix adjust. Identities = 39/186 (20%), Positives = 72/186 (38%), Gaps = 21/186 (11%) Query: 69 LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFH 128 ++GP+G+GK+ + +I + K+ S S ++L + I F +F Sbjct: 62 IIGPNGAGKTTMMDIITGKTAPDTGSVWFGSRHNLLTMNEPEIATLGIGR-KFQKPTVFE 120 Query: 129 IINSIHQYDSSLLMTARTFP----------------VSWGVCLPDLCSRLKAATVVKISL 172 + + ++ R P V + L DL ++L +S Sbjct: 121 ALTVFENLELAMATDKRVIPTLRAAMKAEFRERIGEVLETIGLQDLRNQLAGI----LSH 176 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232 +LE ++ M R + +D+ +A Q MER+ L K + + MG R Sbjct: 177 GQKQWLEIGMLLMQKPRLLLVDEPVAGMTEQEMERTAELLTSLAGKQSVVVVEHDMGFVR 236 Query: 233 SLAAEV 238 S+A +V Sbjct: 237 SIARKV 242 >gi|315292418|gb|EFU51770.1| DnaA regulatory inactivator Hda [Escherichia coli MS 153-1] Length = 260 Score = 35.8 bits (81), Expect = 6.2, Method: Compositional matrix adjust. Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 123 DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180 + +F + N I + + LL+T P + LPDL SRL + K+ L D+D L+ Sbjct: 141 EMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQA 200 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + ++ R + + + ++++R++R + +D++D +++ +T E+LK Sbjct: 201 LQLRARL-RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 259 >gi|145236695|ref|XP_001390995.1| AAA family ATPase [Aspergillus niger CBS 513.88] gi|134075456|emb|CAK48017.1| unnamed protein product [Aspergillus niger] Length = 783 Score = 35.4 bits (80), Expect = 6.3, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 27/40 (67%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P+R ++L GP G+GK+ LA + +S+ST FS A +L S Sbjct: 529 PARGMLLFGPPGTGKTMLARAVATESKSTFFSVSASTLTS 568 >gi|78184461|ref|YP_376896.1| chromosomal replication initiation protein [Synechococcus sp. CC9902] gi|123729943|sp|Q3AYH5|DNAA_SYNS9 RecName: Full=Chromosomal replication initiator protein DnaA gi|78168755|gb|ABB25852.1| chromosomal replication initiator protein DnaA [Synechococcus sp. CC9902] Length = 462 Score = 35.4 bits (80), Expect = 6.3, Method: Compositional matrix adjust. Identities = 27/137 (19%), Positives = 57/137 (41%), Gaps = 3/137 (2%) Query: 111 VLLEDIDLLD---FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 +L++DI ++ + + FH N++H+ +++ + P L SR + + Sbjct: 223 ILVDDIQFIEGKEYTQEEFFHTFNALHEAGRQVVIASDRPPSQIPRLQQRLISRFQMGLI 282 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 I PD + ++ K ++ + + L YI R ++ E + + A G Sbjct: 283 ADIQSPDLETRMAILQKKAEQERMALPRDLIQYIAGRFTSNIRELEGALTRAVAFASITG 342 Query: 228 MGITRSLAAEVLKETQQ 244 + +T A +L T Q Sbjct: 343 LPMTVESVAPMLDPTGQ 359 >gi|284008472|emb|CBA74956.1| DnaA-homolog protein [Arsenophonus nasoniae] Length = 236 Score = 35.4 bits (80), Expect = 6.4, Method: Compositional matrix adjust. Identities = 50/235 (21%), Positives = 108/235 (45%), Gaps = 35/235 (14%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 +++ F SF I+ ++ ++ +AI+ A+ S S + GSGKS L + Sbjct: 17 DDETFASF-----ITGENGILLAAIKSAINQFHS-----SYIYFWSQQEGSGKSHLLH-- 64 Query: 85 SDKSRSTRFSNIAKSLDSILIDTRK---PVLLEDIDLLDFN--------------DTQLF 127 + T S +++ + +D R P +L+ ++ L + LF Sbjct: 65 ---AACTELSQKGEAVGYVPLDKRSYFVPDVLDGMEHLALVCIDNVHCIADDEEWEIALF 121 Query: 128 HIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEKVIVKM 185 ++ N I + S LL+T P + LPDL SRL + K+ L D+D ++ + ++ Sbjct: 122 NLYNRILENGKSCLLITGDKPPRLIDLTLPDLASRLDWGQIYKLHPLSDEDKIQALQLRA 181 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 R + ++++ ++++R++R ++D++D+ ++ +T ++LK Sbjct: 182 KL-RGFELSEEVSRFVLKRLDRKTRTLFTMLDELDHASIVAQRKLTIPFVKDILK 235 >gi|312379275|gb|EFR25600.1| hypothetical protein AND_08921 [Anopheles darlingi] Length = 615 Score = 35.4 bits (80), Expect = 6.5, Method: Compositional matrix adjust. Identities = 17/40 (42%), Positives = 25/40 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P R ++L GP G+GK+ + + +S+ST FS A SL S Sbjct: 373 PPRGILLFGPPGTGKTLIGKCIASQSKSTFFSISASSLTS 412 >gi|239917531|ref|YP_002957089.1| AAA+ family ATPase [Micrococcus luteus NCTC 2665] gi|239838738|gb|ACS30535.1| AAA+ family ATPase [Micrococcus luteus NCTC 2665] Length = 336 Score = 35.4 bits (80), Expect = 6.6, Method: Compositional matrix adjust. Identities = 45/179 (25%), Positives = 74/179 (41%), Gaps = 38/179 (21%) Query: 44 LVHSAIEQAVR-LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 L H +EQ R + P+R ++L GP G+GK+ A + + + FS LD+ Sbjct: 101 LTHVLLEQRQRDALARHGLTPARRLLLTGPPGTGKTSTARVIAGELGLPLFS---IRLDT 157 Query: 103 ILI------------------DTRKPVLLEDIDLLDF-----NDT-QLFHIINSIHQY-- 136 +L +TR L +++D L ND ++ ++NS Q+ Sbjct: 158 VLTKFMGETAAKLRLVFDALAETRGVYLFDEVDALGGDRAAQNDVGEIRRVLNSFLQFLE 217 Query: 137 ---DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 S+++ A P L D + TV+ +LPDD +E VI A I+ Sbjct: 218 EDTSDSVIIAATNHP-----SLLDNALFRRFDTVMDFALPDDAAVESVIKNRLASFHIY 271 >gi|255011256|ref|ZP_05283382.1| chromosomal replication initiation protein [Bacteroides fragilis 3_1_12] gi|313149067|ref|ZP_07811260.1| chromosomal replication initiator protein dnaA [Bacteroides fragilis 3_1_12] gi|313137834|gb|EFR55194.1| chromosomal replication initiator protein dnaA [Bacteroides fragilis 3_1_12] Length = 475 Score = 35.4 bits (80), Expect = 6.7, Method: Compositional matrix adjust. Identities = 36/178 (20%), Positives = 69/178 (38%), Gaps = 33/178 (18%) Query: 67 VILVGPSGSGKSCLAN--------IWSDK--------------------SRSTRFSNIAK 98 + L G SG GK+ LAN ++ DK + + F N + Sbjct: 169 LFLHGASGVGKTHLANAIGTRIKELYPDKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQ 228 Query: 99 SLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158 ++D ++ID +++ + FHI N +HQ L++T+ PV L Sbjct: 229 TIDVLIIDD-----IQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVLLQGMEERL 283 Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216 +R K V ++ P + + ++ + ++ YI + + S+ E +V Sbjct: 284 LTRFKWGMVAELEKPTVELRKNILRNKIHRDGLQFPSEVIDYIAENVNESVRDLEGIV 341 >gi|224283952|ref|ZP_03647274.1| ATPase for DNA replication initiation [Bifidobacterium bifidum NCIMB 41171] gi|313141104|ref|ZP_07803297.1| chromosomal replication initiator protein dnaA [Bifidobacterium bifidum NCIMB 41171] gi|313133614|gb|EFR51231.1| chromosomal replication initiator protein dnaA [Bifidobacterium bifidum NCIMB 41171] Length = 529 Score = 35.4 bits (80), Expect = 6.7, Method: Compositional matrix adjust. Identities = 32/158 (20%), Positives = 66/158 (41%), Gaps = 11/158 (6%) Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMT 143 ++R F+ + +D +LID DI L + Q FH N++HQ + +++ Sbjct: 275 QNRIAEFNRRYREVDVLLID--------DIQFLGGKEATLEQFFHTFNALHQANKRIVIA 326 Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203 + P + L SR + V + PD + ++ M + + I + Sbjct: 327 SDVAPKNLKGFEARLISRFDSGLTVDVKPPDLETRIAILRMMASMNGTSTPNDVLNLIAE 386 Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 R ++ E + ++ +A +TR+LA + L++ Sbjct: 387 RFTENIRELEGALIRVSAVASLSSQPVTRALAEQTLQD 424 >gi|260584257|ref|ZP_05852004.1| DNA replication initiator protein, ATPase [Granulicatella elegans ATCC 700633] gi|260157775|gb|EEW92844.1| DNA replication initiator protein, ATPase [Granulicatella elegans ATCC 700633] Length = 455 Score = 35.4 bits (80), Expect = 6.7, Method: Compositional matrix adjust. Identities = 29/133 (21%), Positives = 59/133 (44%), Gaps = 3/133 (2%) Query: 111 VLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 +L++DI + + FH N++ +++T+ P L SR + Sbjct: 220 LLVDDIQFFAEKEATQEEFFHTFNALFNNQKQIVLTSDRQPTEIKALQERLVSRFVSGLP 279 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 V I+ PD + ++ K I I +YI +++ ++ E + ++ +++ G Sbjct: 280 VDITPPDLETRIAILSKKAEAVGIDIPTDTLSYIAGQIQSNVRELEGALVRVQAYSVTHG 339 Query: 228 MGITRSLAAEVLK 240 IT +LAAE L+ Sbjct: 340 EDITTNLAAEALQ 352 >gi|86154004|ref|ZP_01072206.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni HB93-13] gi|85842542|gb|EAQ59755.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni HB93-13] Length = 440 Score = 35.4 bits (80), Expect = 6.7, Method: Compositional matrix adjust. Identities = 47/196 (23%), Positives = 75/196 (38%), Gaps = 21/196 (10%) Query: 67 VILVGPSGSGKSCLANIWSDKS----------RSTRF-----SNIAK-SLDSILIDTRK- 109 + + GP+G GK+ L + S S F SN+ SLD R Sbjct: 139 IFIYGPTGLGKTHLLQAVGNASLEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNC 198 Query: 110 -PVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 +L++D+ L D + F I N I D ++MT+ P L SR Sbjct: 199 DVLLIDDVQFLGKTDKIQEEFFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHG 258 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 + I+ P D +I K I + + YI + ++ E ++ ++ A Sbjct: 259 IIADITPPQLDTKIAIIRKKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATI 318 Query: 226 RGMGITRSLAAEVLKE 241 G IT LA V+K+ Sbjct: 319 LGQEITLELAKSVMKD 334 >gi|259481767|tpe|CBF75598.1| TPA: AAA family ATPase, putative (AFU_orthologue; AFUA_6G12560) [Aspergillus nidulans FGSC A4] Length = 803 Score = 35.4 bits (80), Expect = 6.8, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 27/40 (67%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P+R ++L GP G+GK+ LA + +S+ST FS A +L S Sbjct: 550 PARGMLLFGPPGTGKTMLARAVATESKSTFFSVSASTLTS 589 >gi|110639382|ref|YP_679591.1| chromosomal replication initiation protein [Cytophaga hutchinsonii ATCC 33406] gi|110282063|gb|ABG60249.1| chromosomal replication initiator protein DnaA [Cytophaga hutchinsonii ATCC 33406] Length = 471 Score = 35.4 bits (80), Expect = 6.8, Method: Compositional matrix adjust. Identities = 36/160 (22%), Positives = 66/160 (41%), Gaps = 11/160 (6%) Query: 88 SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND-TQ--LFHIINSIHQYDSSLLMTA 144 ++S F+N LD +++D D+ L + TQ FHI N +HQ +++T+ Sbjct: 218 NQSQEFTNQFLGLDVLILD--------DVQFLSGKEKTQEIFFHIFNHLHQSGKQIIITS 269 Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 P L SR K + +PD + +I K I I + Y+ Sbjct: 270 DCAPKDIKGLQERLLSRFKWGLSADLQVPDYETRNAIICKKMQFEGIEIAADVIDYLAYS 329 Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 ++ ++ E +V+ + G I LA ++++ Q Sbjct: 330 VDTNMRDLEGVVNSLIAQHTLSGRQIDLELAKQIIQNIVQ 369 >gi|311063460|ref|YP_003970185.1| Chromosomal replication initiator protein DnaA [Bifidobacterium bifidum PRL2010] gi|310865779|gb|ADP35148.1| Chromosomal replication initiator protein DnaA [Bifidobacterium bifidum PRL2010] Length = 529 Score = 35.4 bits (80), Expect = 6.8, Method: Compositional matrix adjust. Identities = 32/158 (20%), Positives = 66/158 (41%), Gaps = 11/158 (6%) Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMT 143 ++R F+ + +D +LID DI L + Q FH N++HQ + +++ Sbjct: 275 QNRIAEFNRRYREVDVLLID--------DIQFLGGKEATLEQFFHTFNALHQANKRIVIA 326 Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203 + P + L SR + V + PD + ++ M + + I + Sbjct: 327 SDVAPKNLKGFEARLISRFDSGLTVDVKPPDLETRIAILRMMASMNGTSTPNDVLNLIAE 386 Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 R ++ E + ++ +A +TR+LA + L++ Sbjct: 387 RFTENIRELEGALIRVSAVASLSSQPVTRALAEQTLQD 424 >gi|157414323|ref|YP_001481579.1| chromosomal replication initiation protein [Campylobacter jejuni subsp. jejuni 81116] gi|172046981|sp|A8FJG5|DNAA_CAMJ8 RecName: Full=Chromosomal replication initiator protein DnaA gi|157385287|gb|ABV51602.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni 81116] Length = 440 Score = 35.4 bits (80), Expect = 6.8, Method: Compositional matrix adjust. Identities = 47/196 (23%), Positives = 75/196 (38%), Gaps = 21/196 (10%) Query: 67 VILVGPSGSGKSCLANIWSDKS----------RSTRF-----SNIAK-SLDSILIDTRK- 109 + + GP+G GK+ L + S S F SN+ SLD R Sbjct: 139 IFIYGPTGLGKTHLLQAVGNASLEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNC 198 Query: 110 -PVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 +L++D+ L D + F I N I D ++MT+ P L SR Sbjct: 199 DVLLIDDVQFLGKTDKIQEEFFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHG 258 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 + I+ P D +I K I + + YI + ++ E ++ ++ A Sbjct: 259 IIADITPPQLDTKIAIIRKKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATI 318 Query: 226 RGMGITRSLAAEVLKE 241 G IT LA V+K+ Sbjct: 319 LGQEITLELAKSVMKD 334 >gi|270284630|ref|ZP_05966430.2| putative ATP synthase F1, delta subunit [Bifidobacterium gallicum DSM 20093] gi|270276567|gb|EFA22421.1| putative ATP synthase F1, delta subunit [Bifidobacterium gallicum DSM 20093] Length = 560 Score = 35.4 bits (80), Expect = 6.9, Method: Compositional matrix adjust. Identities = 35/160 (21%), Positives = 68/160 (42%), Gaps = 11/160 (6%) Query: 85 SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLL 141 SD + F++ +S+D +LID DI L Q FH N++ Q + ++ Sbjct: 305 SDAKPMSEFNHRYRSVDVLLID--------DIQFLSGKSQTMEQFFHTFNTLQQNNKRIV 356 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 + + P L SR ++ VV + P+ + ++ M ++ + + + I Sbjct: 357 IASDVAPKKLRDFEDRLISRFESGLVVDVKPPELETRIAILRMMAETNKVDVPRDVMDLI 416 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + ++ E + ++ A ITR LA +VLK+ Sbjct: 417 AEHCTENIRQLEGALTRVTAQATLNNQPITRILAEQVLKD 456 >gi|325568972|ref|ZP_08145265.1| ABC superfamily ATP binding cassette transporter, binding protein [Enterococcus casseliflavus ATCC 12755] gi|325158010|gb|EGC70166.1| ABC superfamily ATP binding cassette transporter, binding protein [Enterococcus casseliflavus ATCC 12755] Length = 350 Score = 35.4 bits (80), Expect = 7.0, Method: Compositional matrix adjust. Identities = 13/51 (25%), Positives = 36/51 (70%) Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 D + AAY+++++++ + + E ++D D+++++ +GI + E+L++TQ+ Sbjct: 280 DAQAAAYLLEKIQKRIRYQEIILDAGDSVSITLSIGIAQRQRGELLQQTQE 330 >gi|309784767|ref|ZP_07679400.1| dnaA regulatory inactivator Hda [Shigella dysenteriae 1617] gi|308927137|gb|EFP72611.1| dnaA regulatory inactivator Hda [Shigella dysenteriae 1617] Length = 197 Score = 35.4 bits (80), Expect = 7.0, Method: Compositional matrix adjust. Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 123 DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180 + +F + N I + + LL+T P + LPDL SRL + K+ L D+D L+ Sbjct: 78 EMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQA 137 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + ++ R + + + ++++R++R + +D++D +++ +T E+LK Sbjct: 138 LQLRARL-RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 196 >gi|310286521|ref|YP_003937779.1| chromosomal replication initiator protein DnaA [Bifidobacterium bifidum S17] gi|309250457|gb|ADO52205.1| chromosomal replication initiator protein DnaA [Bifidobacterium bifidum S17] Length = 529 Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust. Identities = 32/158 (20%), Positives = 66/158 (41%), Gaps = 11/158 (6%) Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMT 143 ++R F+ + +D +LID DI L + Q FH N++HQ + +++ Sbjct: 275 QNRIAEFNRRYREVDVLLID--------DIQFLGGKEATLEQFFHTFNALHQANKRIVIA 326 Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203 + P + L SR + V + PD + ++ M + + I + Sbjct: 327 SDVAPKNLKGFEARLISRFDSGLTVDVKPPDLETRIAILRMMASMNGTSTPNDVLNLIAE 386 Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 R ++ E + ++ +A +TR+LA + L++ Sbjct: 387 RFTENIRELEGALIRVSAVASLSSQPVTRALAEQTLQD 424 >gi|239996083|ref|ZP_04716607.1| Chromosomal replication initiator, DnaA like protein to DnaA protein Hda [Alteromonas macleodii ATCC 27126] Length = 245 Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust. Identities = 22/103 (21%), Positives = 51/103 (49%), Gaps = 1/103 (0%) Query: 123 DTQLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 + LF ++N + + ++++ ++ P + LPDL SRL + ++ DD+ E+ Sbjct: 125 EEALFDLLNRVIETKQTMVLCSSHLGPSNPAFVLPDLRSRLAWGVIYHVNQLDDNGREEA 184 Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 + A+R + + + +++ ER L L+ ++D +L Sbjct: 185 VRLRAAERGLKLSNQALQFLLHHSERDLKSLMSLLARLDTRSL 227 >gi|228967948|ref|ZP_04128958.1| Efflux ABC transporter, ATP-binding protein [Bacillus thuringiensis serovar sotto str. T04001] gi|228791729|gb|EEM39321.1| Efflux ABC transporter, ATP-binding protein [Bacillus thuringiensis serovar sotto str. T04001] Length = 178 Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 16/101 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V ++GPSGSGK+ L N+ S +T ILID + V + D L F L Sbjct: 37 VGIMGPSGSGKTTLLNVLSTIDNATN--------GEILIDGKDIVKMNDDKLALFRRDHL 88 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 I + D T V + LP S++KA+ + Sbjct: 89 GFIFQDYNLLD--------TLTVKENIALPLALSKVKASEI 121 >gi|189233764|ref|XP_001814283.1| PREDICTED: similar to aaa atpase [Tribolium castaneum] Length = 535 Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 34/124 (27%) Query: 5 KEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRD--DLLVHSAIE------------ 50 K D V + +KND+ +++EE+ F C G+ R+ D+L ++ Sbjct: 204 KPDKDKDVDNNEKNDKAESEEEKKF----ECHGMERELADVLERDIVQKNPNIRWDDIAD 259 Query: 51 --QAVRLIDS---WPSW----------PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN 95 +A RL++ P W P + V++VGP G+GK+ LA + + ST F N Sbjct: 260 LHEAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC-STTFFN 318 Query: 96 IAKS 99 ++ S Sbjct: 319 VSSS 322 >gi|315057442|gb|ADT71771.1| Chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni S3] Length = 440 Score = 35.4 bits (80), Expect = 7.2, Method: Compositional matrix adjust. Identities = 47/196 (23%), Positives = 75/196 (38%), Gaps = 21/196 (10%) Query: 67 VILVGPSGSGKSCLANIWSDKS----------RSTRF-----SNIAK-SLDSILIDTRK- 109 + + GP+G GK+ L + S S F SN+ SLD R Sbjct: 139 IFVYGPTGLGKTHLLQAVGNASLEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNC 198 Query: 110 -PVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 +L++D+ L D + F I N I D ++MT+ P L SR Sbjct: 199 DVLLIDDVQFLGKTDKIQEEFFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHG 258 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 + I+ P D +I K I + + YI + ++ E ++ ++ A Sbjct: 259 IIADITPPQLDTKIAIIRKKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATI 318 Query: 226 RGMGITRSLAAEVLKE 241 G IT LA V+K+ Sbjct: 319 LGQEITLELAKSVMKD 334 >gi|57236915|ref|YP_178030.1| chromosomal replication initiation protein [Campylobacter jejuni RM1221] gi|71151795|sp|Q5HXF5|DNAA_CAMJR RecName: Full=Chromosomal replication initiator protein DnaA gi|57165719|gb|AAW34498.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni RM1221] Length = 440 Score = 35.4 bits (80), Expect = 7.3, Method: Compositional matrix adjust. Identities = 47/196 (23%), Positives = 75/196 (38%), Gaps = 21/196 (10%) Query: 67 VILVGPSGSGKSCLANIWSDKS----------RSTRF-----SNIAK-SLDSILIDTRK- 109 + + GP+G GK+ L + S S F SN+ SLD R Sbjct: 139 IFVYGPTGLGKTHLLQAVGNASLEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNC 198 Query: 110 -PVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 +L++D+ L D + F I N I D ++MT+ P L SR Sbjct: 199 DVLLIDDVQFLGKTDKIQEEFFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHG 258 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 + I+ P D +I K I + + YI + ++ E ++ ++ A Sbjct: 259 IIADITPPQLDTKIAIIRKKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATI 318 Query: 226 RGMGITRSLAAEVLKE 241 G IT LA V+K+ Sbjct: 319 LGQEITLELAKSVMKD 334 >gi|296104123|ref|YP_003614269.1| ATPase regulatory factor Hda [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058582|gb|ADF63320.1| ATPase regulatory factor Hda [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 197 Score = 35.4 bits (80), Expect = 7.4, Method: Compositional matrix adjust. Identities = 27/117 (23%), Positives = 60/117 (51%), Gaps = 3/117 (2%) Query: 126 LFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEKVIV 183 +F++ N I + + LL+T P + LPDL SRL + K+ L D+D L+ + + Sbjct: 81 IFNLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQL 140 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + R + + + ++++R++R + +D++D +++ +T ++LK Sbjct: 141 RARL-RGFELPEDVGRFLLKRLDREMRTLFDTLDQLDRASITAQRKLTIPFVKDILK 196 >gi|154491703|ref|ZP_02031329.1| hypothetical protein PARMER_01314 [Parabacteroides merdae ATCC 43184] gi|218264325|ref|ZP_03478182.1| hypothetical protein PRABACTJOHN_03873 [Parabacteroides johnsonii DSM 18315] gi|154087944|gb|EDN86989.1| hypothetical protein PARMER_01314 [Parabacteroides merdae ATCC 43184] gi|218222093|gb|EEC94743.1| hypothetical protein PRABACTJOHN_03873 [Parabacteroides johnsonii DSM 18315] Length = 462 Score = 35.4 bits (80), Expect = 7.4, Method: Compositional matrix adjust. Identities = 33/139 (23%), Positives = 63/139 (45%), Gaps = 11/139 (7%) Query: 111 VLLEDI-DLLDFNDTQ--LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 ++L+DI +L+ + TQ FHI N +H L++T+ PV L +RLK Sbjct: 227 LILDDIQELIGKDKTQNTFFHIFNHLHLLGKQLILTSDKAPVDLQGMEERLITRLKWGLT 286 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 ++ PD D +K++ + + I + +I + ++ E +V + LA S Sbjct: 287 AELDRPDLDLRKKILKNKISHDGVVIPDDVFNFIASNVTENVRDVEGIVASL--LAYSTA 344 Query: 228 MG------ITRSLAAEVLK 240 +T+ + + V+K Sbjct: 345 FNRMIDLPLTKQVVSRVVK 363 >gi|229824635|ref|ZP_04450704.1| hypothetical protein GCWU000282_01982 [Catonella morbi ATCC 51271] gi|229786006|gb|EEP22120.1| hypothetical protein GCWU000282_01982 [Catonella morbi ATCC 51271] Length = 461 Score = 35.4 bits (80), Expect = 7.5, Method: Compositional matrix adjust. Identities = 39/158 (24%), Positives = 67/158 (42%), Gaps = 16/158 (10%) Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL-DFNDT--QLFHIINSIHQYDSSLLM 142 +K+ F ++ + +D +LID DI L + N T + FH N ++ + ++M Sbjct: 209 EKNTIEEFRHMYRKIDVLLID--------DIQFLSNKNKTREEFFHTFNELYNHGKQIVM 260 Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV-IVKMFADRQIFIDKKLAAYI 201 T P S L SR + I+ P DF ++ I++ A + D YI Sbjct: 261 TCDRLPSSLSGLEDRLISRFAWGLQIDITPP--DFETRIAILRKKASNEFSADT--LQYI 316 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + ++ E + ++ A IT +LAAE L Sbjct: 317 ASHVNTNIRELEGALTRVTAYATIHNREITTNLAAEAL 354 >gi|153951168|ref|YP_001397274.1| chromosomal replication initiation protein [Campylobacter jejuni subsp. doylei 269.97] gi|166201873|sp|A7H194|DNAA_CAMJD RecName: Full=Chromosomal replication initiator protein DnaA gi|152938614|gb|ABS43355.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. doylei 269.97] Length = 440 Score = 35.4 bits (80), Expect = 7.5, Method: Compositional matrix adjust. Identities = 47/196 (23%), Positives = 75/196 (38%), Gaps = 21/196 (10%) Query: 67 VILVGPSGSGKSCLANIWSDKS----------RSTRF-----SNIAK-SLDSILIDTRK- 109 + + GP+G GK+ L + S S F SN+ SLD R Sbjct: 139 IFVYGPTGLGKTHLLQAVGNASLEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNC 198 Query: 110 -PVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 +L++D+ L D + F I N I D ++MT+ P L SR Sbjct: 199 DVLLIDDVQFLGKTDKIQEEFFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHG 258 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 + I+ P D +I K I + + YI + ++ E ++ ++ A Sbjct: 259 IIADITPPQLDTKIAIIRKKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATI 318 Query: 226 RGMGITRSLAAEVLKE 241 G IT LA V+K+ Sbjct: 319 LGQEITLELAKSVMKD 334 >gi|288916710|ref|ZP_06411085.1| chromosomal replication initiator protein DnaA [Frankia sp. EUN1f] gi|288351965|gb|EFC86167.1| chromosomal replication initiator protein DnaA [Frankia sp. EUN1f] Length = 515 Score = 35.4 bits (80), Expect = 7.6, Method: Compositional matrix adjust. Identities = 27/134 (20%), Positives = 61/134 (45%), Gaps = 3/134 (2%) Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 +L++DI L+ + + FH N +H + +++++ P L SR + + Sbjct: 274 LLVDDIQFLENKERTQEEFFHTFNVLHDTEKQIVISSDRSPKQLAALEDRLRSRFEWGLI 333 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 ++ PD + ++ K A ++ + + YI +ER++ E + ++ A Sbjct: 334 TDVTPPDLETRIAILSKKAATERLPVPPDVLEYIATHIERNIRELEGALIRVAAFASLNK 393 Query: 228 MGITRSLAAEVLKE 241 + R+LA VL++ Sbjct: 394 SHVDRTLAEIVLRD 407 >gi|86152361|ref|ZP_01070571.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni 260.94] gi|315123617|ref|YP_004065621.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85840658|gb|EAQ57910.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni 260.94] gi|315017339|gb|ADT65432.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 440 Score = 35.4 bits (80), Expect = 7.6, Method: Compositional matrix adjust. Identities = 47/196 (23%), Positives = 75/196 (38%), Gaps = 21/196 (10%) Query: 67 VILVGPSGSGKSCLANIWSDKS----------RSTRF-----SNIAK-SLDSILIDTRK- 109 + + GP+G GK+ L + S S F SN+ SLD R Sbjct: 139 IFVYGPTGLGKTHLLQAVGNASLEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNC 198 Query: 110 -PVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 +L++D+ L D + F I N I D ++MT+ P L SR Sbjct: 199 DVLLIDDVQFLGKTDKIQEEFFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHG 258 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 + I+ P D +I K I + + YI + ++ E ++ ++ A Sbjct: 259 IIADITPPQLDTKIAIIRKKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATI 318 Query: 226 RGMGITRSLAAEVLKE 241 G IT LA V+K+ Sbjct: 319 LGQEITLELAKSVMKD 334 >gi|293401231|ref|ZP_06645375.1| replicative DNA helicase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|317502255|ref|ZP_07960428.1| replicative DNA helicase [Lachnospiraceae bacterium 8_1_57FAA] gi|291305357|gb|EFE46602.1| replicative DNA helicase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|316896370|gb|EFV18468.1| replicative DNA helicase [Lachnospiraceae bacterium 8_1_57FAA] Length = 276 Score = 35.4 bits (80), Expect = 7.6, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 22/122 (18%) Query: 45 VHSAIEQAVRLIDSWPSWPSRV--VILVGPSGSGKS----CLANIWSDKSRSTRFSNIAK 98 ++ IE+A + W S+ ++L G G+GKS C+AN DK +N AK Sbjct: 102 INPEIEKAKNYVTHWEEIKSKAMGLLLWGDVGTGKSFFAGCVANALLDKGVPVLMTNFAK 161 Query: 99 SLDSI----------LIDTRKPVLLEDIDLL------DFNDTQLFHIINSIHQYDSSLLM 142 L+S+ I++ L ID L +F Q+FH+I+S ++ +++ Sbjct: 162 ILNSLTGIYPQDRNEFINSLNQYSLLIIDDLGVERNSEFALEQVFHVIDSRYRSMKPMII 221 Query: 143 TA 144 T Sbjct: 222 TT 223 >gi|78212507|ref|YP_381286.1| chromosomal replication initiation protein [Synechococcus sp. CC9605] gi|78196966|gb|ABB34731.1| chromosomal replication initiator protein DnaA [Synechococcus sp. CC9605] Length = 450 Score = 35.4 bits (80), Expect = 7.6, Method: Compositional matrix adjust. Identities = 30/152 (19%), Positives = 63/152 (41%), Gaps = 5/152 (3%) Query: 93 FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWG 152 F + ++ D IL+D ++ I+ ++ + FH N++H+ +++ + P Sbjct: 201 FRDRYRAADLILVDD-----IQFIEGKEYTQEEFFHTFNALHEAGRQVVIASDRPPSQIP 255 Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 L SR + + I PD + ++ K ++ + + L YI R ++ Sbjct: 256 RLQQRLISRFQMGLIADIQSPDLETRMAILQKKAEQERMSLPRDLIQYIAGRFTSNIREL 315 Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 E + + A G+ +T A +L T Q Sbjct: 316 EGALTRAVAFASITGLPMTVESVAPMLDPTGQ 347 >gi|297799416|ref|XP_002867592.1| abc transporter family protein [Arabidopsis lyrata subsp. lyrata] gi|297313428|gb|EFH43851.1| abc transporter family protein [Arabidopsis lyrata subsp. lyrata] Length = 577 Score = 35.4 bits (80), Expect = 7.7, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 21/109 (19%) Query: 61 SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120 S PS+++ +VGPSG+GKS L +I + ++ T S L+S+ I Sbjct: 38 SHPSQILAIVGPSGAGKSTLLDILAARTFPTSGS---MHLNSVPI--------------- 79 Query: 121 FNDTQLFHIINSIHQYDS--SLLMTARTFPVSWGVCLPDLCSRLKAATV 167 N + I + + Q+D+ LL + TF S + LP + S++ V Sbjct: 80 -NPSSYRKISSYVPQHDTFFPLLTVSETFTFSASLLLPKIPSKVSNVVV 127 >gi|113866929|ref|YP_725418.1| ABC transporter ATPase/permease [Ralstonia eutropha H16] gi|113525705|emb|CAJ92050.1| ABC-type transporter, ATPase and permease components: LipidE family [Ralstonia eutropha H16] Length = 580 Score = 35.4 bits (80), Expect = 7.7, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 63 PSRVVILVGPSGSGKSCLANI---WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P VV LVGPSGSGK+ L N+ + D + + + L D R + D++ Sbjct: 361 PGEVVALVGPSGSGKTTLVNLVPRFFDPTGGRILLDGTPLTELSLKDLRNQIAFVSQDVV 420 Query: 120 DFNDT 124 FNDT Sbjct: 421 LFNDT 425 >gi|78221229|ref|YP_382976.1| chromosomal replication initiation protein [Geobacter metallireducens GS-15] gi|123742956|sp|Q39ZS3|DNAA_GEOMG RecName: Full=Chromosomal replication initiator protein DnaA gi|78192484|gb|ABB30251.1| chromosomal replication initiator protein, DnaA [Geobacter metallireducens GS-15] Length = 450 Score = 35.4 bits (80), Expect = 7.7, Method: Compositional matrix adjust. Identities = 33/153 (21%), Positives = 66/153 (43%), Gaps = 11/153 (7%) Query: 92 RFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFP 148 +F N + +D +LID DI + + + FH N++++ +++T+ FP Sbjct: 204 QFRNKFRKMDLLLID--------DIQFIAGKERTQEEFFHTFNALYESHKQIVVTSDKFP 255 Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 L SR + + I PD + ++ K I + +A ++ + Sbjct: 256 KDIPGLEERLRSRFEWGLIADIQPPDTETKVAILSKKADSDGIRLPDDVALFLASSASTN 315 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + E ++ ++ +A G IT +A EVLK+ Sbjct: 316 VRELEGMLIRLGAVASLTGKNITLDMAREVLKD 348 >gi|121612751|ref|YP_999720.1| chromosomal replication initiation protein [Campylobacter jejuni subsp. jejuni 81-176] gi|167004697|ref|ZP_02270455.1| chromosomal replication initiation protein [Campylobacter jejuni subsp. jejuni 81-176] gi|205355742|ref|ZP_03222512.1| chromosomal replication initiator protein [Campylobacter jejuni subsp. jejuni CG8421] gi|166201874|sp|A1VX79|DNAA_CAMJJ RecName: Full=Chromosomal replication initiator protein DnaA gi|87248987|gb|EAQ71949.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni 81-176] gi|205346519|gb|EDZ33152.1| chromosomal replication initiator protein [Campylobacter jejuni subsp. jejuni CG8421] Length = 440 Score = 35.4 bits (80), Expect = 7.7, Method: Compositional matrix adjust. Identities = 47/196 (23%), Positives = 75/196 (38%), Gaps = 21/196 (10%) Query: 67 VILVGPSGSGKSCLANIWSDKS----------RSTRF-----SNIAK-SLDSILIDTRK- 109 + + GP+G GK+ L + S S F SN+ SLD R Sbjct: 139 IFVYGPTGLGKTHLLQAVGNASLEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNC 198 Query: 110 -PVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 +L++D+ L D + F I N I D ++MT+ P L SR Sbjct: 199 DVLLIDDVQFLGKTDKIQEEFFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHG 258 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 + I+ P D +I K I + + YI + ++ E ++ ++ A Sbjct: 259 IIADITPPQLDTKIAIIRKKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATI 318 Query: 226 RGMGITRSLAAEVLKE 241 G IT LA V+K+ Sbjct: 319 LGQEITLELAKSVMKD 334 >gi|325068095|ref|ZP_08126768.1| ABC transporter related protein [Actinomyces oris K20] Length = 587 Score = 35.4 bits (80), Expect = 7.9, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 17/81 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P V L+GPSGSGKS LA + + RF++ V + +DL D + Sbjct: 361 PGTVTALLGPSGSGKSTLATLIA------RFAD----------PDAGAVRIGGVDLRDMD 404 Query: 123 DTQLFHIINSIHQYDSSLLMT 143 ++ L+ ++ + Q D+ LL T Sbjct: 405 ESTLYSTVSFVLQ-DAQLLAT 424 >gi|308274785|emb|CBX31384.1| Uncharacterized ABC transporter ATP-binding protein yvrO [uncultured Desulfobacterium sp.] Length = 234 Score = 35.4 bits (80), Expect = 7.9, Method: Compositional matrix adjust. Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 1/41 (2%) Query: 69 LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLD-SILIDTR 108 L+GPSGSGKS L N+ + ++ S IA+ +D S+LI+T Sbjct: 39 LMGPSGSGKSTLLNLIAGLDKADSGSIIAQGIDISLLIETE 79 >gi|121700090|ref|XP_001268310.1| AAA family ATPase, putative [Aspergillus clavatus NRRL 1] gi|119396452|gb|EAW06884.1| AAA family ATPase, putative [Aspergillus clavatus NRRL 1] Length = 805 Score = 35.4 bits (80), Expect = 7.9, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 27/40 (67%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P+R ++L GP G+GK+ LA + +S+ST FS A +L S Sbjct: 550 PARGMLLFGPPGTGKTMLARAVATESKSTFFSVSASTLTS 589 >gi|270014962|gb|EFA11410.1| hypothetical protein TcasGA2_TC013585 [Tribolium castaneum] Length = 518 Score = 35.4 bits (80), Expect = 7.9, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 34/117 (29%) Query: 12 VPDKQKNDQPKNKEEQLFFSFPRCLGISRD--DLLVHSAIE--------------QAVRL 55 V + +KND+ +++EE+ F C G+ R+ D+L ++ +A RL Sbjct: 194 VDNNEKNDKAESEEEKKF----ECHGMERELADVLERDIVQKNPNIRWDDIADLHEAKRL 249 Query: 56 IDS---WPSW----------PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS 99 ++ P W P + V++VGP G+GK+ LA + + ST F N++ S Sbjct: 250 LEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC-STTFFNVSSS 305 >gi|315928462|gb|EFV07774.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 440 Score = 35.4 bits (80), Expect = 8.0, Method: Compositional matrix adjust. Identities = 47/196 (23%), Positives = 75/196 (38%), Gaps = 21/196 (10%) Query: 67 VILVGPSGSGKSCLANIWSDKS----------RSTRF-----SNIAK-SLDSILIDTRK- 109 + + GP+G GK+ L + S S F SN+ SLD R Sbjct: 139 IFVYGPTGLGKTHLLQAVGNASLEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNC 198 Query: 110 -PVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 +L++D+ L D + F I N I D ++MT+ P L SR Sbjct: 199 DVLLIDDVQFLGKTDKIQEEFFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHG 258 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 + I+ P D +I K I + + YI + ++ E ++ ++ A Sbjct: 259 IIADITPPQLDTKIAIIRKKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATI 318 Query: 226 RGMGITRSLAAEVLKE 241 G IT LA V+K+ Sbjct: 319 LGQEITLELAKSVMKD 334 >gi|302035395|ref|YP_003795717.1| chromosomal replication initiator protein DnaA [Candidatus Nitrospira defluvii] gi|300603459|emb|CBK39789.1| Chromosomal replication initiator protein DnaA [Candidatus Nitrospira defluvii] Length = 446 Score = 35.4 bits (80), Expect = 8.0, Method: Compositional matrix adjust. Identities = 42/210 (20%), Positives = 95/210 (45%), Gaps = 34/210 (16%) Query: 60 PSWPSRVVILVGPSGSGKSCL----ANIWSDKS-------RSTRFSNIAKSLDSI----L 104 P+ + L G G GK+ L N +++S + +F+N + ++SI + Sbjct: 140 PAKAYNPLFLYGGVGLGKTHLLNAIGNYLAERSDLRIAYLTTEQFTN--EVINSIRYDKM 197 Query: 105 IDTRKP------VLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 ID RK ++++DI L + + FH N++++ +++++ FP + Sbjct: 198 IDLRKRYRNVDMLMIDDIQFLAGKERTQEEFFHTFNTLYEAHKQIVLSSDRFPKD----M 253 Query: 156 PDLCSRLKA----ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211 PD+ RL++ + + PD + ++ K D +I + + + ++ M+ ++ Sbjct: 254 PDIEERLRSRFEWGLIADLQPPDVETRIAILRKKSEDERIALPEDVIHFLATTMKNNIRE 313 Query: 212 AEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 E + ++ + G IT +A VL++ Sbjct: 314 LEGSLVRVGAYSSLTGQTITLDMAKNVLRD 343 >gi|254569128|ref|XP_002491674.1| Cytoplasmic heavy chain dynein, microtubule motor protein, required for anaphase spindle elongation [Pichia pastoris GS115] gi|238031471|emb|CAY69394.1| Cytoplasmic heavy chain dynein, microtubule motor protein, required for anaphase spindle elongation [Pichia pastoris GS115] gi|328351820|emb|CCA38219.1| Dynein heavy chain, cytoplasmic , cytosolic [Pichia pastoris CBS 7435] Length = 4149 Score = 35.4 bits (80), Expect = 8.0, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 51/108 (47%), Gaps = 23/108 (21%) Query: 40 RDDLLVHS-AIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI--WSDKSRSTRFS-- 94 DDLL H IE+A+ + +ILVGPS +GKS L W ++ + + S Sbjct: 2788 HDDLLDHILRIERALNQVQGH-------LILVGPSATGKSSLTKFVCWMNQYKFVQLSTW 2840 Query: 95 ------NIAKSLDSILIDTRKP---VLLEDIDLLDFNDTQLFHIINSI 133 N + L IL+DT K VLL ID D +DT +N++ Sbjct: 2841 KGYTILNFEEQLRKILVDTIKENQIVLL--IDENDISDTSFIERMNNL 2886 >gi|86150555|ref|ZP_01068779.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni CF93-6] gi|85839007|gb|EAQ56272.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni CF93-6] Length = 440 Score = 35.4 bits (80), Expect = 8.1, Method: Compositional matrix adjust. Identities = 47/196 (23%), Positives = 75/196 (38%), Gaps = 21/196 (10%) Query: 67 VILVGPSGSGKSCLANIWSDKS----------RSTRF-----SNIAK-SLDSILIDTRK- 109 + + GP+G GK+ L + S S F SN+ SLD R Sbjct: 139 IFVYGPTGLGKTHLLQAVGNASLEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNC 198 Query: 110 -PVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 +L++D+ L D + F I N I D ++MT+ P L SR Sbjct: 199 DVLLIDDVQFLGKTDKIQEEFFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHG 258 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 + I+ P D +I K I + + YI + ++ E ++ ++ A Sbjct: 259 IIADITPPQLDTKIAIIRKKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATI 318 Query: 226 RGMGITRSLAAEVLKE 241 G IT LA V+K+ Sbjct: 319 LGQEITLELAKSVMKD 334 >gi|326774026|ref|ZP_08233308.1| LOW QUALITY PROTEIN: ABC transporter, ATP-binding protein [Actinomyces viscosus C505] gi|326636165|gb|EGE37069.1| LOW QUALITY PROTEIN: ABC transporter, ATP-binding protein [Actinomyces viscosus C505] Length = 619 Score = 35.0 bits (79), Expect = 8.1, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 17/81 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P V L+GPSGSGKS LA + + RF++ V + +DL D + Sbjct: 410 PGTVTALLGPSGSGKSTLATLIA------RFAD----------PDAGAVRIGGVDLRDMD 453 Query: 123 DTQLFHIINSIHQYDSSLLMT 143 ++ L+ ++ + Q D+ LL T Sbjct: 454 ESTLYSTVSFVLQ-DAQLLAT 473 >gi|284925304|gb|ADC27656.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni IA3902] Length = 440 Score = 35.0 bits (79), Expect = 8.1, Method: Compositional matrix adjust. Identities = 47/196 (23%), Positives = 75/196 (38%), Gaps = 21/196 (10%) Query: 67 VILVGPSGSGKSCLANIWSDKS----------RSTRF-----SNIAK-SLDSILIDTRK- 109 + + GP+G GK+ L + S S F SN+ SLD R Sbjct: 139 IFVYGPTGLGKTHLLQAVGNASLEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNC 198 Query: 110 -PVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 +L++D+ L D + F I N I D ++MT+ P L SR Sbjct: 199 DVLLIDDVQFLGKTDKIQEEFFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHG 258 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 + I+ P D +I K I + + YI + ++ E ++ ++ A Sbjct: 259 IIADITPPQLDTKIAIIRKKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATI 318 Query: 226 RGMGITRSLAAEVLKE 241 G IT LA V+K+ Sbjct: 319 LGQEITLELAKSVMKD 334 >gi|158319060|ref|YP_001511567.1| chromosomal replication initiation protein [Alkaliphilus oremlandii OhILAs] gi|167016896|sp|A8MEA0|DNAA_ALKOO RecName: Full=Chromosomal replication initiator protein DnaA gi|158139259|gb|ABW17571.1| chromosomal replication initiator protein DnaA [Alkaliphilus oremlandii OhILAs] Length = 451 Score = 35.0 bits (79), Expect = 8.1, Method: Compositional matrix adjust. Identities = 36/182 (19%), Positives = 78/182 (42%), Gaps = 13/182 (7%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P V+ V + +I D R+ F N +++D +L+D DI + Sbjct: 177 PKAKVVYVSSETFTNELINSIRHD--RNVEFRNRFRTIDVLLVD--------DIQFIAGK 226 Query: 123 DT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179 ++ + FH N++H+ + +++++ P L SR + + I PD + Sbjct: 227 ESTQEEFFHTFNALHESNKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDIQPPDLETRI 286 Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 ++ K I + ++ +I ++++ ++ E + ++ + IT LA+E L Sbjct: 287 AILYKKAQMENIDVPNEVLTHIAKKIQSNIRELEGALIRIVAYSSLTNSEITVELASEAL 346 Query: 240 KE 241 KE Sbjct: 347 KE 348 >gi|158311868|ref|YP_001504376.1| chromosomal replication initiator protein DnaA [Frankia sp. EAN1pec] gi|158107273|gb|ABW09470.1| chromosomal replication initiator protein DnaA [Frankia sp. EAN1pec] Length = 527 Score = 35.0 bits (79), Expect = 8.2, Method: Compositional matrix adjust. Identities = 27/134 (20%), Positives = 61/134 (45%), Gaps = 3/134 (2%) Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 +L++DI L+ + + FH N +H + +++++ P L SR + + Sbjct: 286 LLVDDIQFLENKERTQEEFFHTFNVLHDTEKQIVISSDRSPKQLSALEDRLRSRFEWGLI 345 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 ++ PD + ++ K A ++ + + YI +ER++ E + ++ A Sbjct: 346 TDVTPPDLETRIAILSKKAATERLPVPPDVLEYIATHIERNIRELEGALIRVAAFASLNK 405 Query: 228 MGITRSLAAEVLKE 241 + R+LA VL++ Sbjct: 406 SHVDRTLAEIVLRD 419 >gi|315931305|gb|EFV10274.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni 327] Length = 440 Score = 35.0 bits (79), Expect = 8.4, Method: Compositional matrix adjust. Identities = 47/196 (23%), Positives = 75/196 (38%), Gaps = 21/196 (10%) Query: 67 VILVGPSGSGKSCLANIWSDKS----------RSTRF-----SNIAK-SLDSILIDTRK- 109 + + GP+G GK+ L + S S F SN+ SLD R Sbjct: 139 IFVYGPTGLGKTHLLQAVGNASLEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNC 198 Query: 110 -PVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 +L++D+ L D + F I N I D ++MT+ P L SR Sbjct: 199 DVLLIDDVQFLGKTDKIQEEFFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHG 258 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 + I+ P D +I K I + + YI + ++ E ++ ++ A Sbjct: 259 IIADITPPQLDTKIAIIRKKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATI 318 Query: 226 RGMGITRSLAAEVLKE 241 G IT LA V+K+ Sbjct: 319 LGQEITLELAKSVMKD 334 >gi|305663892|ref|YP_003860180.1| AAA ATPase central domain protein [Ignisphaera aggregans DSM 17230] gi|304378461|gb|ADM28300.1| AAA ATPase central domain protein [Ignisphaera aggregans DSM 17230] Length = 480 Score = 35.0 bits (79), Expect = 8.4, Method: Compositional matrix adjust. Identities = 41/183 (22%), Positives = 77/183 (42%), Gaps = 24/183 (13%) Query: 48 AIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL----------------ANIWSDKSRST 91 A + + + WP+ + ++L GP G GK+ L A+ + +S Sbjct: 28 AKNKVLEWLKKWPNVQRKALLLYGPPGCGKTSLVEAIANEFKYELIEMNASDFRRRSDIE 87 Query: 92 RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ--LFHIINSIHQYDSSLLMTARTFPV 149 R + A S+ SI TRK +LL+++D + + + + I + + ++MTA P Sbjct: 88 RIAIRASSMQSIFGKTRKIILLDEVDGISAKEDEGGIEAIKQLVEKTSVPVIMTANN-PY 146 Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209 P L + A +V+ + V+ K+ + D++ YI++R E L Sbjct: 147 D-----PSLRVLREIAEMVQFKKLSKSDMRMVLNKICRAENLRCDEEAIDYIIERAEGDL 201 Query: 210 VFA 212 A Sbjct: 202 RAA 204 >gi|88597701|ref|ZP_01100934.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni 84-25] gi|218561694|ref|YP_002343473.1| chromosomal replication initiation protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|14194686|sp|Q9PJB0|DNAA_CAMJE RecName: Full=Chromosomal replication initiator protein DnaA gi|88190005|gb|EAQ93981.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni 84-25] gi|112359400|emb|CAL34182.1| chromosomal replication initiator protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315930328|gb|EFV09416.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni 305] Length = 440 Score = 35.0 bits (79), Expect = 8.4, Method: Compositional matrix adjust. Identities = 47/196 (23%), Positives = 75/196 (38%), Gaps = 21/196 (10%) Query: 67 VILVGPSGSGKSCLANIWSDKS----------RSTRF-----SNIAK-SLDSILIDTRK- 109 + + GP+G GK+ L + S S F SN+ SLD R Sbjct: 139 IFVYGPTGLGKTHLLQAVGNASLEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNC 198 Query: 110 -PVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 +L++D+ L D + F I N I D ++MT+ P L SR Sbjct: 199 DVLLIDDVQFLGKTDKIQEEFFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHG 258 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 + I+ P D +I K I + + YI + ++ E ++ ++ A Sbjct: 259 IIADITPPQLDTKIAIIRKKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATI 318 Query: 226 RGMGITRSLAAEVLKE 241 G IT LA V+K+ Sbjct: 319 LGQEITLELAKSVMKD 334 >gi|254495524|ref|ZP_05108448.1| chromosomal replication initiator protein DnaA [Polaribacter sp. MED152] gi|85819880|gb|EAQ41037.1| chromosomal replication initiator protein DnaA [Polaribacter sp. MED152] Length = 475 Score = 35.0 bits (79), Expect = 8.6, Method: Compositional matrix adjust. Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 27/133 (20%) Query: 67 VILVGPSGSGKSCLANI--------WSDKS----RSTRFSNIAKSLDSILIDTRKPVL-- 112 +++ G G GK+ L++ + DK+ S +F+ + +DS+ +TR + Sbjct: 176 LLIYGGVGLGKTHLSHAIGVDIKDKYPDKTVLYISSEKFTQ--QFIDSVKSNTRNDFIHF 233 Query: 113 LEDIDLLDFNDTQL-----------FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161 + ID+L +D Q FHI N +HQ +++T+ PV L SR Sbjct: 234 YQMIDVLIIDDVQFLSGKAGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSR 293 Query: 162 LKAATVVKISLPD 174 K ++ PD Sbjct: 294 FKWGLSAELQAPD 306 >gi|283956179|ref|ZP_06373664.1| chromosomal replication initiator protein [Campylobacter jejuni subsp. jejuni 1336] gi|283792333|gb|EFC31117.1| chromosomal replication initiator protein [Campylobacter jejuni subsp. jejuni 1336] Length = 440 Score = 35.0 bits (79), Expect = 8.6, Method: Compositional matrix adjust. Identities = 47/196 (23%), Positives = 75/196 (38%), Gaps = 21/196 (10%) Query: 67 VILVGPSGSGKSCLANIWSDKS----------RSTRF-----SNIAK-SLDSILIDTRK- 109 + + GP+G GK+ L + S S F SN+ SLD R Sbjct: 139 IFVYGPTGLGKTHLLQAVGNASLEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNC 198 Query: 110 -PVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 +L++D+ L D + F I N I D ++MT+ P L SR Sbjct: 199 DVLLIDDVQFLGKTDKIQEEFFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHG 258 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 + I+ P D +I K I + + YI + ++ E ++ ++ A Sbjct: 259 IIADITPPQLDTKIAIIRKKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATI 318 Query: 226 RGMGITRSLAAEVLKE 241 G IT LA V+K+ Sbjct: 319 LGQEITLELAKSVMKD 334 >gi|325102758|ref|YP_004272412.1| chromosomal replication initiator protein DnaA [Pedobacter saltans DSM 12145] gi|324971606|gb|ADY50590.1| chromosomal replication initiator protein DnaA [Pedobacter saltans DSM 12145] Length = 475 Score = 35.0 bits (79), Expect = 8.7, Method: Compositional matrix adjust. Identities = 44/182 (24%), Positives = 82/182 (45%), Gaps = 29/182 (15%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTR-FSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 P ++VI V K C + S K+ + F N +++D I++D D+ +F Sbjct: 201 PDKLVICVSCE---KFCQQFVDSLKNNTINDFVNFYQAMDVIIMD----------DVHNF 247 Query: 122 ---NDTQ--LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 + TQ FHI N +HQ L++T+ P L SR K +++PD + Sbjct: 248 AGKDKTQDIFFHIFNHLHQSGKQLILTSDKAPKDLAGLEERLLSRFKWGLSADLTVPDIE 307 Query: 177 FLEKVIVKMFADRQIFIDKKLAAYI-------VQRMERSLV--FAEKLVDKMD-NLALSR 226 ++ K I + + + Y+ V+ +E ++V A+ ++K + +LAL++ Sbjct: 308 TRMAILKKKMYQDGIELPEDVIEYVAHNIDNNVRELEGAMVSLLAQSTLNKKEVDLALAK 367 Query: 227 GM 228 M Sbjct: 368 QM 369 >gi|226309588|ref|YP_002769482.1| chromosomal replication initiation protein [Brevibacillus brevis NBRC 100599] gi|226092536|dbj|BAH40978.1| chromosomal replication initiator protein DnaA [Brevibacillus brevis NBRC 100599] Length = 453 Score = 35.0 bits (79), Expect = 8.7, Method: Compositional matrix adjust. Identities = 34/157 (21%), Positives = 69/157 (43%), Gaps = 11/157 (7%) Query: 88 SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTA 144 +++ F N +S+D +LID DI L ++ + FH N++H+ +++++ Sbjct: 200 NKAVEFRNKYRSVDVLLID--------DIQFLAGKESTQEEFFHTFNALHEESKQIIISS 251 Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 P L SR + + I PD + ++ K + I ++ AYI + Sbjct: 252 DRPPKEIPTLEDRLRSRFEWGLITDIQPPDLETRIAILRKKAKAENLDIPNEVMAYIANQ 311 Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++ ++ E + ++ + I LAAE LK+ Sbjct: 312 IDSNIRELEGALIRVVAYSSLINRDIDTQLAAEALKD 348 >gi|119472663|ref|XP_001258398.1| AAA family ATPase, putative [Neosartorya fischeri NRRL 181] gi|119406550|gb|EAW16501.1| AAA family ATPase, putative [Neosartorya fischeri NRRL 181] Length = 805 Score = 35.0 bits (79), Expect = 8.7, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 27/40 (67%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P+R ++L GP G+GK+ LA + +S+ST FS A +L S Sbjct: 550 PARGMLLFGPPGTGKTMLARAVATESKSTFFSVSASTLTS 589 >gi|148241930|ref|YP_001227087.1| chromosomal replication initiation protein [Synechococcus sp. RCC307] gi|147850240|emb|CAK27734.1| Chromosomal replication initiator protein dnaA [Synechococcus sp. RCC307] Length = 461 Score = 35.0 bits (79), Expect = 8.8, Method: Compositional matrix adjust. Identities = 25/132 (18%), Positives = 54/132 (40%), Gaps = 3/132 (2%) Query: 111 VLLEDIDLLD---FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 ++++DI ++ + + FH N++H+ +++ + P L SR + Sbjct: 223 IMVDDIQFIEGKEYTQEEFFHTFNALHEAGRQIVIASDRPPSQIQRLQERLISRFSMGLI 282 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 I PD + ++ K Q+ + + L YI R ++ E + + A G Sbjct: 283 ADIQAPDLETRMAILHKKAEQEQMRLPRDLIQYIAGRFTSNIRELEGALTRAVAFASITG 342 Query: 228 MGITRSLAAEVL 239 + +T A +L Sbjct: 343 LPMTVDAVAPLL 354 >gi|33866070|ref|NP_897629.1| chromosomal replication initiation protein [Synechococcus sp. WH 8102] gi|61212711|sp|Q7U605|DNAA_SYNPX RecName: Full=Chromosomal replication initiator protein DnaA gi|33639045|emb|CAE08051.1| chromosomal replication initiator protein DnaA [Synechococcus sp. WH 8102] Length = 465 Score = 35.0 bits (79), Expect = 8.9, Method: Compositional matrix adjust. Identities = 26/137 (18%), Positives = 57/137 (41%), Gaps = 3/137 (2%) Query: 111 VLLEDIDLLD---FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 +L++DI ++ + + FH N++H+ +++ + P L SR + + Sbjct: 226 LLVDDIQFIEGKEYTQEEFFHTFNALHEAGKQVVIASDRPPSQISRLQQRLISRFQMGLI 285 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 I PD + ++ K ++ + + L Y+ R ++ E + + A G Sbjct: 286 ADIQAPDLETRMAILQKKAEQERMALPRDLIHYLAGRFTSNIRELEGALTRAVAFASITG 345 Query: 228 MGITRSLAAEVLKETQQ 244 + +T A +L T Q Sbjct: 346 LPMTVESVAPMLDPTGQ 362 >gi|124022539|ref|YP_001016846.1| chromosomal replication initiation protein [Prochlorococcus marinus str. MIT 9303] gi|166214690|sp|A2C7X1|DNAA_PROM3 RecName: Full=Chromosomal replication initiator protein DnaA gi|123962825|gb|ABM77581.1| chromosomal replication initiator protein DnaA [Prochlorococcus marinus str. MIT 9303] Length = 463 Score = 35.0 bits (79), Expect = 8.9, Method: Compositional matrix adjust. Identities = 29/152 (19%), Positives = 61/152 (40%), Gaps = 5/152 (3%) Query: 93 FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWG 152 F + ++ D IL+D ++ I+ ++ + FH N++H+ +++ + P Sbjct: 214 FRDRYRATDLILVDD-----IQFIEGKEYTQEEFFHTFNALHEAGRQIVIASDRPPSQIP 268 Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 L SR + I PD + ++ K ++ + + L YI R ++ Sbjct: 269 KLQERLISRFSMGLIADIQSPDLETRMAILQKKAEQERMMLPRDLIQYIAGRFTSNIREL 328 Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 E + + A G+ +T A +L Q Sbjct: 329 EGALTRAVAFASITGLPMTVESVAPMLDPNGQ 360 >gi|261340795|ref|ZP_05968653.1| DnaA regulatory inactivator Hda [Enterobacter cancerogenus ATCC 35316] gi|288317219|gb|EFC56157.1| DnaA regulatory inactivator Hda [Enterobacter cancerogenus ATCC 35316] Length = 197 Score = 35.0 bits (79), Expect = 9.1, Method: Compositional matrix adjust. Identities = 27/120 (22%), Positives = 61/120 (50%), Gaps = 3/120 (2%) Query: 123 DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180 + +F++ N I + + LL+T P + LPDL SRL + K+ L D+D L+ Sbjct: 78 EMAIFNLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQA 137 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + ++ R + + + ++++R++R + +D++D +++ +T ++LK Sbjct: 138 LQLRSRL-RGFELPEDVGRFLLKRLDREMRTLFDTLDQLDRASITAQRKLTIPFVKDILK 196 >gi|260869185|ref|YP_003235587.1| ATPase regulatory factor Hda [Escherichia coli O111:H- str. 11128] gi|257765541|dbj|BAI37036.1| ATPase regulatory factor Hda [Escherichia coli O111:H- str. 11128] Length = 248 Score = 35.0 bits (79), Expect = 9.2, Method: Compositional matrix adjust. Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 123 DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180 + +F + N I + + LL+T P + LPDL SRL + K+ L D+D L+ Sbjct: 129 EMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQA 188 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + ++ R + + + ++++R++R + +D++D +++ +T E+LK Sbjct: 189 LQLRARL-RGFELPEDVGRFLLKRLDREMRTLFITLDQLDRASITAQRKLTIPFVKEILK 247 >gi|269836397|ref|YP_003318625.1| phosphate ABC transporter, ATPase subunit [Sphaerobacter thermophilus DSM 20745] gi|269785660|gb|ACZ37803.1| phosphate ABC transporter, ATPase subunit [Sphaerobacter thermophilus DSM 20745] Length = 272 Score = 35.0 bits (79), Expect = 9.2, Method: Compositional matrix adjust. Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 27/183 (14%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL--EDIDLLDFN 122 RV ++GPSG+GKS L + + + + +D R VLL EDI L + Sbjct: 47 RVTAIIGPSGAGKSTLLRA---------LNRLHEKVPGAGVDGR--VLLDGEDIYGLGVD 95 Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV----KISLPDD--D 176 L + + Q + LL + VS G+ L + R +AATV +++L D+ D Sbjct: 96 PILLRRRVGMVFQQPNPLLTRSIAENVSIGLELVGMPRRERAATVEWALRRVALWDEVRD 155 Query: 177 FLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234 L+ + +Q + I + LA + ++ ++ +D +A SR + R L Sbjct: 156 RLDHPATSLSGGQQQRLCIARTLA------VRPEVILMDEPASALDPIATSRIEDLIREL 209 Query: 235 AAE 237 A+E Sbjct: 210 ASE 212 >gi|146312625|ref|YP_001177699.1| DNA replication initiation factor [Enterobacter sp. 638] gi|145319501|gb|ABP61648.1| regulatory inactivation of DnaA Hda protein [Enterobacter sp. 638] Length = 197 Score = 35.0 bits (79), Expect = 9.2, Method: Compositional matrix adjust. Identities = 27/117 (23%), Positives = 60/117 (51%), Gaps = 3/117 (2%) Query: 126 LFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEKVIV 183 +F++ N I + + LL+T P + LPDL SRL + K+ L D+D L+ + + Sbjct: 81 MFNLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQL 140 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + R + + + ++++R++R + +D++D+ +++ +T + LK Sbjct: 141 RSRL-RGFELPEDVGRFLLKRLDREMRTLFDTLDQLDHASITAQRKLTIPFVKDTLK 196 >gi|331007619|ref|ZP_08330761.1| Chromosomal replication initiator protein DnaA [gamma proteobacterium IMCC1989] gi|330418559|gb|EGG93083.1| Chromosomal replication initiator protein DnaA [gamma proteobacterium IMCC1989] Length = 584 Score = 35.0 bits (79), Expect = 9.5, Method: Compositional matrix adjust. Identities = 33/152 (21%), Positives = 66/152 (43%), Gaps = 11/152 (7%) Query: 93 FSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPV 149 F +S+D++LID DI D + + FH N++ + + +++T +P Sbjct: 339 FKRYYRSVDALLID--------DIQFFAGKDRSQEEFFHTFNALLEGNQQIILTCDRYPK 390 Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209 L SR +++ P+ + +++K A+ +I + A +I QR+ ++ Sbjct: 391 VINNLEERLKSRFGWGLTIEVEPPELETRAAILLKRAAEIKIDLSYDAAFFIAQRVRSNV 450 Query: 210 VFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 E + ++ A IT L E LK+ Sbjct: 451 RELEGALKRVIANATFTQRPITVDLVKEALKD 482 >gi|330752007|emb|CBL80520.1| chromosomal replication initiation protein [uncultured Polaribacter sp.] Length = 475 Score = 35.0 bits (79), Expect = 9.6, Method: Compositional matrix adjust. Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 27/133 (20%) Query: 67 VILVGPSGSGKSCLANI--------WSDKS----RSTRFSNIAKSLDSILIDTRKPVL-- 112 +++ G G GK+ L++ + DK+ S +F+ + +DS+ +TR + Sbjct: 176 LLIYGGVGLGKTHLSHAIGVDIKDKYPDKTVLYISSEKFTQ--QFIDSVKSNTRNDFIHF 233 Query: 113 LEDIDLLDFNDTQL-----------FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161 + ID+L +D Q FHI N +HQ +++T+ PV L SR Sbjct: 234 YQMIDVLIIDDVQFLSGKAGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSR 293 Query: 162 LKAATVVKISLPD 174 K ++ PD Sbjct: 294 FKWGLSAELQAPD 306 >gi|322833964|ref|YP_004213991.1| DnaA regulatory inactivator Hda [Rahnella sp. Y9602] gi|321169165|gb|ADW74864.1| DnaA regulatory inactivator Hda [Rahnella sp. Y9602] Length = 235 Score = 35.0 bits (79), Expect = 9.6, Method: Compositional matrix adjust. Identities = 26/119 (21%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 123 DTQLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180 + +FH+ N I + + L +T P + LPDL SRL + K+ L D++ L+ Sbjct: 116 EAAVFHLYNRILETGRTRLFITGDRPPRQLNLSLPDLASRLDWGQIYKLQPLSDEEKLQA 175 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + ++ R + + + ++++R++R + +D++D +++ +T E+L Sbjct: 176 LQLRA-KLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEIL 233 >gi|225575691|ref|ZP_03784301.1| hypothetical protein RUMHYD_03784 [Blautia hydrogenotrophica DSM 10507] gi|225037095|gb|EEG47341.1| hypothetical protein RUMHYD_03784 [Blautia hydrogenotrophica DSM 10507] Length = 449 Score = 35.0 bits (79), Expect = 9.7, Method: Compositional matrix adjust. Identities = 32/157 (20%), Positives = 72/157 (45%), Gaps = 5/157 (3%) Query: 85 SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTA 144 + + T+F + +++D +L+D + ++ +D +F FH NS+H +++++ Sbjct: 193 GNNTAMTQFRDKYRNIDVLLVDDVQFIIGKDATQEEF-----FHTFNSLHSAKKQIIISS 247 Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 P + + SR + + IS PD + ++ K I++ + YI Sbjct: 248 DKPPKDMEILEDRIRSRFEWGLIADISSPDYETRVAILKKKEEMDGYDINEDVIKYIATN 307 Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++ ++ E ++K+ A +T LA +VLK+ Sbjct: 308 IKSNIRELEGSLNKVMAFANLEKREVTVELAEQVLKD 344 >gi|149908827|ref|ZP_01897487.1| DNA replication initiation factor [Moritella sp. PE36] gi|149808101|gb|EDM68042.1| DNA replication initiation factor [Moritella sp. PE36] Length = 239 Score = 35.0 bits (79), Expect = 9.7, Method: Compositional matrix adjust. Identities = 48/193 (24%), Positives = 85/193 (44%), Gaps = 21/193 (10%) Query: 67 VILVGPSGSGKSCLANIW----SDKSRSTRFSNIAKS---LDSIL--IDTRKPVLLEDID 117 + L G SG S L + SD RS + + S + S+L ++ V +++I+ Sbjct: 48 IYLFGNRSSGTSHLLHATCTECSDADRSAAYLPMEMSSMMIPSVLDGMEHLDLVCIDNIE 107 Query: 118 LLDFN---DTQLFHIINS-IHQYD----SSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 L+ N + LF+ N + +D SL++T + G+ LPDL SRL + Sbjct: 108 LIAGNREWEVALFNFYNRWLDSHDKNTPGSLIVTGNSAARHLGIQLPDLLSRLDWGVSYQ 167 Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229 + L DDD + R + + +A +++ R R + +D++D ++S Sbjct: 168 LQLLDDDGKLAALQLRAEFRGLKLPMDVARFLLNRSSRDMKTLIATLDRLDQASIS---- 223 Query: 230 ITRSLAAEVLKET 242 R L +KET Sbjct: 224 AQRRLTIPFVKET 236 >gi|254519653|ref|ZP_05131709.1| transcriptional regulator [Clostridium sp. 7_2_43FAA] gi|226913402|gb|EEH98603.1| transcriptional regulator [Clostridium sp. 7_2_43FAA] Length = 891 Score = 35.0 bits (79), Expect = 9.8, Method: Composition-based stats. Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 8/98 (8%) Query: 2 NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPS 61 N+ ++DY + DK+ D E++ FF +G + + +EQA + S+P Sbjct: 96 NMQEDDYINAIKDKKTEDIKDFHEQKDFFK--EVVGYNGS---LRVQVEQAKAAV-SYPP 149 Query: 62 WPSRVVILVGPSGSGKSCLANIWSDKSRST-RFSNIAK 98 V+IL GPSG GKS LA+ + ++ST FS AK Sbjct: 150 HGLHVLIL-GPSGVGKSYLADAMYEFAKSTSNFSEDAK 186 >gi|50120196|ref|YP_049363.1| DNA replication initiation factor [Pectobacterium atrosepticum SCRI1043] gi|57012731|sp|Q6D7R8|HDA_ERWCT RecName: Full=DnaA-homolog protein hda gi|49610722|emb|CAG74167.1| conserved hypothetical protein [Pectobacterium atrosepticum SCRI1043] Length = 238 Score = 35.0 bits (79), Expect = 9.9, Method: Compositional matrix adjust. Identities = 27/119 (22%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 123 DTQLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKIS-LPDDDFLEK 180 + +F++ N I + +LL+ T P + LPDL SRL + K+ L DD+ E Sbjct: 119 EMAVFNLYNRIQETGRALLLITGDRPPRQLNIRLPDLASRLDWGQIYKLQPLSDDEKGEA 178 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + ++ R + + ++ ++++R++R + +D++D+ +++ +T E+L Sbjct: 179 LQLRARL-RGFELPEDVSRFLLKRLDREMRTLFMTLDQLDHASITAQRKLTIPFVKEIL 236 >gi|28373154|ref|NP_783753.1| ABC transporter ATP-binding protein [Clostridium tetani E88] gi|28208738|gb|AAO37420.1|AF528097_24 ABC transporter ATP-binding protein [Clostridium tetani E88] Length = 252 Score = 35.0 bits (79), Expect = 10.0, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 14/73 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V ++GPSGSGK+ L N S TR I+I+ ++P L+D +L F +L Sbjct: 35 VAIMGPSGSGKTTLLNCVSTIDSPTR--------GEIIINNKRPHELDDDNLAKFRRQEL 86 Query: 127 ------FHIINSI 133 F+++N++ Sbjct: 87 GFVFQDFNLVNTL 99 >gi|70992571|ref|XP_751134.1| AAA family ATPase [Aspergillus fumigatus Af293] gi|66848767|gb|EAL89096.1| AAA family ATPase, putative [Aspergillus fumigatus Af293] Length = 802 Score = 35.0 bits (79), Expect = 10.0, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 27/40 (67%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P+R ++L GP G+GK+ LA + +S+ST FS A +L S Sbjct: 547 PARGMLLFGPPGTGKTMLARAVATESKSTFFSVSASTLTS 586 Searching..................................................done Results from round 2 >gi|254780567|ref|YP_003064980.1| hypothetical protein CLIBASIA_02270 [Candidatus Liberibacter asiaticus str. psy62] gi|254040244|gb|ACT57040.1| hypothetical protein CLIBASIA_02270 [Candidatus Liberibacter asiaticus str. psy62] Length = 246 Score = 343 bits (880), Expect = 2e-92, Method: Composition-based stats. Identities = 246/246 (100%), Positives = 246/246 (100%) Query: 1 MNLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWP 60 MNLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWP Sbjct: 1 MNLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWP 60 Query: 61 SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120 SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD Sbjct: 61 SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120 Query: 121 FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK Sbjct: 121 FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK Sbjct: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 Query: 241 ETQQCD 246 ETQQCD Sbjct: 241 ETQQCD 246 >gi|315121761|ref|YP_004062250.1| hypothetical protein CKC_00055 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495163|gb|ADR51762.1| hypothetical protein CKC_00055 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 247 Score = 305 bits (781), Expect = 5e-81, Method: Composition-based stats. Identities = 183/247 (74%), Positives = 210/247 (85%), Gaps = 2/247 (0%) Query: 1 MNLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRC-LGISRDDLLVHSAIEQAVRLIDSW 59 MN + + Y+ P K++ D+ K K EQLF SFPRC I+RDDLLVH +IEQAVR+IDSW Sbjct: 1 MNFITKGYNLVFPAKERVDRGK-KGEQLFLSFPRCFTKINRDDLLVHDSIEQAVRIIDSW 59 Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSW S +I VGPSGSGKSCLANIWS KS++ R S +A+ LDS LIDTRKP+LLED D Sbjct: 60 PSWISPTMIFVGPSGSGKSCLANIWSQKSKAQRLSGLARGLDSSLIDTRKPILLEDADRF 119 Query: 120 DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179 D NDT+LFHIINSIHQ+DSSLLMTARTFPVSW V LPDL SRLKAAT+VK+SLPDDDFLE Sbjct: 120 DLNDTELFHIINSIHQHDSSLLMTARTFPVSWSVRLPDLRSRLKAATIVKMSLPDDDFLE 179 Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 K IVKMFADRQIFID++LA YIVQRMERSLVFAEKLV++MD+LALSRG GITRSLA+EVL Sbjct: 180 KAIVKMFADRQIFIDERLAFYIVQRMERSLVFAEKLVNRMDDLALSRGTGITRSLASEVL 239 Query: 240 KETQQCD 246 +E Q+CD Sbjct: 240 EEIQKCD 246 >gi|325292517|ref|YP_004278381.1| DNA replication initiation ATPase protein [Agrobacterium sp. H13-3] gi|325060370|gb|ADY64061.1| DNA replication initiation ATPase protein [Agrobacterium sp. H13-3] Length = 242 Score = 295 bits (757), Expect = 2e-78, Method: Composition-based stats. Identities = 119/231 (51%), Positives = 157/231 (67%), Gaps = 1/231 (0%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPS 73 D+ KND ++K EQL +F RDDLLV +++ AV L+D WP+WPS VV+L GP Sbjct: 3 DQIKNDNARSKAEQLPLAFSHQSASGRDDLLVSDSLKAAVSLVDEWPNWPSPVVVLAGPP 62 Query: 74 GSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSI 133 GSGKS LANIW + S + A + + + PVL ED D F+DT+LFH+INS+ Sbjct: 63 GSGKSHLANIWKNISSAQDIHPQA-GVGAARLAETGPVLFEDADRRGFDDTELFHVINSV 121 Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193 Q+ ++LLMT+R +P +W V LPDL SRLKA TVV+ PD+ L +V+VK+FADRQ+++ Sbjct: 122 RQHGTTLLMTSRQWPAAWPVTLPDLRSRLKAVTVVETGEPDEGLLAQVLVKLFADRQLYM 181 Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 D KL YIV RMERSL A+ +VD++D LALSRG ITR LAAEVL + Sbjct: 182 DDKLIGYIVNRMERSLDTAQTIVDRIDRLALSRGTRITRPLAAEVLNAMGE 232 >gi|222085485|ref|YP_002544015.1| DNA replication initiation ATPase protein [Agrobacterium radiobacter K84] gi|221722933|gb|ACM26089.1| DNA replication initiation ATPase protein [Agrobacterium radiobacter K84] Length = 237 Score = 294 bits (754), Expect = 6e-78, Method: Composition-based stats. Identities = 124/232 (53%), Positives = 158/232 (68%), Gaps = 1/232 (0%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPS 73 D + D + EQL +F RDDLLV + AVR++DSWP WPS VVIL GP Sbjct: 3 DVKNADLRRKPAEQLPLAFTHDAASGRDDLLVADPLSAAVRIVDSWPQWPSPVVILAGPV 62 Query: 74 GSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSI 133 GSGKS LA+IW ++S + A S D+ +I PV+ ED+D L F+DT+LFH+INS+ Sbjct: 63 GSGKSHLASIWCERSGAVPIHPKAGS-DAAVIAANGPVVFEDVDRLGFDDTELFHVINSV 121 Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193 + + LLMT+R +P+SW V LPDL SRLKAATVV+I PD++ L +VIVK+FADRQ++I Sbjct: 122 RENGTGLLMTSRLWPMSWPVTLPDLRSRLKAATVVEIGEPDEELLSQVIVKLFADRQLYI 181 Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 D KL YIV RMERSL A+ +VD++D LAL RG ITR LAAEVL E Sbjct: 182 DDKLVLYIVNRMERSLNAAQLIVDRLDRLALGRGTRITRILAAEVLNELGNS 233 >gi|15888480|ref|NP_354161.1| hypothetical protein Atu1143 [Agrobacterium tumefaciens str. C58] gi|15156178|gb|AAK86946.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 242 Score = 288 bits (739), Expect = 3e-76, Method: Composition-based stats. Identities = 115/232 (49%), Positives = 156/232 (67%), Gaps = 1/232 (0%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPS 73 D+ K D ++K EQL +F R+DLLV +++ AV L+D WP+WPS VV+L GP Sbjct: 3 DQIKTDNARSKAEQLPLAFSHQSASGREDLLVSASLAAAVSLVDEWPNWPSPVVVLAGPP 62 Query: 74 GSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSI 133 GSGKS LANIW + S + A + + +T PVL ED D F+DT+LFH+INS+ Sbjct: 63 GSGKSHLANIWKNISDARDIHPEAGADAARAAET-GPVLFEDADRRGFDDTELFHVINSV 121 Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193 Q+ ++LLMT+R +P +W V LPDL SRLKA TVV+ PD+ L +V+VK+FADRQ+++ Sbjct: 122 RQHGTTLLMTSRQWPAAWPVTLPDLRSRLKAVTVVETGEPDEGLLAQVLVKLFADRQLYM 181 Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 D KL YIV RMERSL A+ +V+++D+LALSR ITR L AEVL + Sbjct: 182 DDKLIGYIVNRMERSLDTAQTIVEQIDHLALSRATRITRPLVAEVLNAMDKA 233 >gi|327192210|gb|EGE59179.1| hypothetical protein RHECNPAF_237005 [Rhizobium etli CNPAF512] Length = 237 Score = 288 bits (739), Expect = 4e-76, Method: Composition-based stats. Identities = 119/233 (51%), Positives = 153/233 (65%), Gaps = 1/233 (0%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPS 73 D + D + EQL F RDDLL+ + AV ++D+WP+WPS VV+L GP Sbjct: 3 DVKNADPKRKAGEQLPLVFSHDAASGRDDLLISERLAAAVSIVDAWPAWPSPVVVLAGPV 62 Query: 74 GSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSI 133 GSGKS LA IW + S + D+ + PVL ED D L F+D LFH+INS+ Sbjct: 63 GSGKSHLARIWRELSGAVSIHP-ELGSDAAVAAAAGPVLFEDADRLGFDDNALFHVINSV 121 Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193 ++ +SLLMT+R +P+SW V LPDL SRLKAATVV+I PD+ L +VIVK+FADRQ++I Sbjct: 122 REHGTSLLMTSRLWPISWPVSLPDLRSRLKAATVVEIGEPDEALLSQVIVKLFADRQLYI 181 Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 D KL YIV RMERSL A+ +V+++D LALSRG ITRSLAAEVL E + Sbjct: 182 DDKLVLYIVNRMERSLNAAQTIVERLDRLALSRGTKITRSLAAEVLNELGNSE 234 >gi|218675452|ref|ZP_03525121.1| hypothetical protein RetlG_30801 [Rhizobium etli GR56] Length = 237 Score = 288 bits (737), Expect = 5e-76, Method: Composition-based stats. Identities = 119/233 (51%), Positives = 153/233 (65%), Gaps = 1/233 (0%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPS 73 D + D + EQL F RDDLL+ + AV ++D+WP+WPS VV+L GP Sbjct: 3 DVKNADPKRKAGEQLPLVFSHDAASGRDDLLISERLAAAVSIVDAWPAWPSPVVVLAGPV 62 Query: 74 GSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSI 133 GSGKS LA IW + S + D+ + PVL ED D L F+D LFH+INS+ Sbjct: 63 GSGKSHLARIWRELSGAVSIHP-ELGSDAAVAAAAGPVLFEDADRLGFDDNALFHVINSV 121 Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193 ++ +SLLMT+R +P+SW V LPDL SRLKAATVV+I PD+ L +VIVK+FADRQ++I Sbjct: 122 REHGTSLLMTSRLWPISWPVSLPDLRSRLKAATVVEIGEPDEGLLSQVIVKLFADRQLYI 181 Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 D KL YIV RMERSL A+ +V+++D LALSRG ITRSLAAEVL E + Sbjct: 182 DDKLVLYIVNRMERSLNAAQTIVERLDRLALSRGTKITRSLAAEVLNELGNSE 234 >gi|237815164|ref|ZP_04594162.1| ATP/GTP-binding protein [Brucella abortus str. 2308 A] gi|260883502|ref|ZP_05895116.1| permease [Brucella abortus bv. 9 str. C68] gi|297248081|ref|ZP_06931799.1| ATP/GTP-binding protein [Brucella abortus bv. 5 str. B3196] gi|237790001|gb|EEP64211.1| ATP/GTP-binding protein [Brucella abortus str. 2308 A] gi|260873030|gb|EEX80099.1| permease [Brucella abortus bv. 9 str. C68] gi|297175250|gb|EFH34597.1| ATP/GTP-binding protein [Brucella abortus bv. 5 str. B3196] Length = 658 Score = 287 bits (736), Expect = 8e-76, Method: Composition-based stats. Identities = 97/228 (42%), Positives = 146/228 (64%), Gaps = 5/228 (2%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 + Q+ + G +R+DL+V ++ AV LID WP+W S V IL GP+G+GK+ LA Sbjct: 430 DAPRQIPLNLEHQPGYNREDLIVTASNRAAVDLIDRWPNWLSPVTILAGPTGAGKTHLAE 489 Query: 83 IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY-----D 137 IW + + + +++ +PVL+++I F++T LFH+INS+ Q+ Sbjct: 490 IWRSGTDALLVDPSNITEEAVNSAAERPVLIDNIGAEAFDETGLFHLINSVRQHAAQGPG 549 Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD L VI K+FADRQ+ ++ + Sbjct: 550 PSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDMLLSGVIHKLFADRQVSVEPHV 609 Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 +Y+V RMERSL+ A ++VD++D AL + ITR+LAA++L + Q Sbjct: 610 VSYLVSRMERSLLSAIQIVDRLDRAALEQKSRITRALAAQILADMGQA 657 >gi|241203978|ref|YP_002975074.1| hypothetical protein Rleg_1243 [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857868|gb|ACS55535.1| conserved hypothetical protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 237 Score = 285 bits (731), Expect = 3e-75, Method: Composition-based stats. Identities = 119/233 (51%), Positives = 152/233 (65%), Gaps = 1/233 (0%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPS 73 D + D + EQL F RDDLL+ + AV ++D+WP+WPS VV+L GP Sbjct: 3 DVKNADPKRKAGEQLPLVFSHDAASGRDDLLISERLAAAVSIVDAWPAWPSPVVVLAGPV 62 Query: 74 GSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSI 133 GSGKS LA IW + S + D+ + PVL ED D L F+D LFH+INS+ Sbjct: 63 GSGKSHLARIWRELSGAVDIHP-ELGSDAAIAAAAGPVLFEDADRLGFDDNALFHVINSV 121 Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193 + +SLLMT+R +P+SW V LPDL SRLKAATVV+I PD+ L +VIVK+FADRQ++I Sbjct: 122 RENGTSLLMTSRLWPMSWPVLLPDLRSRLKAATVVEIGEPDEALLSQVIVKLFADRQLYI 181 Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 D KL YIV RMERSL A+ +V+++D LALSRG ITRSLAAEVL E + Sbjct: 182 DDKLVLYIVVRMERSLNAAQTIVERLDRLALSRGTKITRSLAAEVLNELGNSE 234 >gi|116251364|ref|YP_767202.1| hypothetical protein RL1598 [Rhizobium leguminosarum bv. viciae 3841] gi|115256012|emb|CAK07093.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae 3841] Length = 237 Score = 285 bits (731), Expect = 3e-75, Method: Composition-based stats. Identities = 120/233 (51%), Positives = 153/233 (65%), Gaps = 1/233 (0%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPS 73 D + D +N EQL F RDDLL+ + AV ++D+WP+WPS VV+L GP Sbjct: 3 DVKNADPKRNAGEQLPLVFSHDAASGRDDLLISERLAAAVSIVDAWPAWPSPVVVLAGPV 62 Query: 74 GSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSI 133 GSGKS LA IW + S + D+ + PVL ED D L F+D LFH+INS+ Sbjct: 63 GSGKSHLARIWRELSGAVDIHP-ELGSDAAVAAAAGPVLFEDADRLGFDDNALFHVINSV 121 Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193 + +SLLMT+R +P+SW V LPDL SRLKAATVV+I PD+ L +VIVK+FADRQ++I Sbjct: 122 RENGTSLLMTSRLWPMSWPVLLPDLRSRLKAATVVEIGEPDEVLLSQVIVKLFADRQLYI 181 Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 D KL YIV RMERSL A+ +V+++D LALSRG ITRSLAAEVL E + Sbjct: 182 DDKLVLYIVVRMERSLNAAQTIVERLDRLALSRGTKITRSLAAEVLNELGNSE 234 >gi|190891172|ref|YP_001977714.1| hypothetical protein RHECIAT_CH0001558 [Rhizobium etli CIAT 652] gi|190696451|gb|ACE90536.1| hypothetical conserved protein [Rhizobium etli CIAT 652] Length = 237 Score = 285 bits (731), Expect = 3e-75, Method: Composition-based stats. Identities = 119/233 (51%), Positives = 153/233 (65%), Gaps = 1/233 (0%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPS 73 D + D + EQL F RDDLL+ + AV ++D+WP+WPS VV+L GP Sbjct: 3 DVKNADPKRKAGEQLPLVFSHDAASGRDDLLISERLAAAVSIVDAWPAWPSPVVVLAGPV 62 Query: 74 GSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSI 133 GSGKS LA IW + S + D+ + PVL ED D L F+D LFH+INS+ Sbjct: 63 GSGKSHLARIWRELSGAVDIRP-DLGSDAAVAAAAGPVLFEDADRLGFDDNALFHVINSV 121 Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193 ++ +SLLMT+R +P+SW V LPDL SRLKAATVV+I PD+ L +VIVK+FADRQ++I Sbjct: 122 REHGTSLLMTSRLWPISWPVSLPDLRSRLKAATVVEIGEPDEALLSQVIVKLFADRQLYI 181 Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 D KL YIV RMERSL A+ +V+++D LALSRG ITRSLAAEVL E + Sbjct: 182 DDKLVLYIVNRMERSLNAAQTIVERLDRLALSRGTKITRSLAAEVLNELGNSE 234 >gi|82699601|ref|YP_414175.1| ATP/GTP-binding protein [Brucella melitensis biovar Abortus 2308] gi|189023923|ref|YP_001934691.1| ATP/GTP-binding protein [Brucella abortus S19] gi|260545574|ref|ZP_05821315.1| ATP/GTP-binding protein [Brucella abortus NCTC 8038] gi|260754474|ref|ZP_05866822.1| permease [Brucella abortus bv. 6 str. 870] gi|260761520|ref|ZP_05873863.1| permease [Brucella abortus bv. 2 str. 86/8/59] gi|82615702|emb|CAJ10689.1| ATP/GTP-binding site motif A (P-loop):Protein of unknown function UPF0118 [Brucella melitensis biovar Abortus 2308] gi|189019495|gb|ACD72217.1| ATP/GTP-binding protein [Brucella abortus S19] gi|260096981|gb|EEW80856.1| ATP/GTP-binding protein [Brucella abortus NCTC 8038] gi|260671952|gb|EEX58773.1| permease [Brucella abortus bv. 2 str. 86/8/59] gi|260674582|gb|EEX61403.1| permease [Brucella abortus bv. 6 str. 870] Length = 627 Score = 285 bits (731), Expect = 3e-75, Method: Composition-based stats. Identities = 97/228 (42%), Positives = 146/228 (64%), Gaps = 5/228 (2%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 + Q+ + G +R+DL+V ++ AV LID WP+W S V IL GP+G+GK+ LA Sbjct: 399 DAPRQIPLNLEHQPGYNREDLIVTASNRAAVDLIDRWPNWLSPVTILAGPTGAGKTHLAE 458 Query: 83 IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY-----D 137 IW + + + +++ +PVL+++I F++T LFH+INS+ Q+ Sbjct: 459 IWRSGTDALLVDPSNITEEAVNSAAERPVLIDNIGAEAFDETGLFHLINSVRQHAAQGPG 518 Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD L VI K+FADRQ+ ++ + Sbjct: 519 PSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDMLLSGVIHKLFADRQVSVEPHV 578 Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 +Y+V RMERSL+ A ++VD++D AL + ITR+LAA++L + Q Sbjct: 579 VSYLVSRMERSLLSAIQIVDRLDRAALEQKSRITRALAAQILADMGQA 626 >gi|209548700|ref|YP_002280617.1| hypothetical protein Rleg2_1097 [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534456|gb|ACI54391.1| conserved hypothetical protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 237 Score = 285 bits (729), Expect = 4e-75, Method: Composition-based stats. Identities = 119/233 (51%), Positives = 153/233 (65%), Gaps = 1/233 (0%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPS 73 D + D + EQL F SRDDLL+ + AV ++D+WP+WPS VV+L GP Sbjct: 3 DVKNADPKRKAGEQLPLVFSHDAASSRDDLLISERLAAAVSIVDAWPAWPSPVVVLAGPV 62 Query: 74 GSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSI 133 GSGKS LA IW + S + D+ + PVL ED D L F+D LFH+INS+ Sbjct: 63 GSGKSHLARIWRELSGAVDIHP-ELGSDAAVAAAAGPVLFEDADRLGFDDNALFHVINSV 121 Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193 + +SLLMT+R +P+SW V LPDL SRLKAATVV+I PD+ L +VIVK+FADRQ++I Sbjct: 122 RENGTSLLMTSRLWPISWPVSLPDLRSRLKAATVVEIGEPDEVLLSQVIVKLFADRQLYI 181 Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 D KL YIV RMERSL A+ +V+++D LALSRG ITRS+AAEVL E + Sbjct: 182 DDKLVLYIVVRMERSLNAAQTIVERLDRLALSRGTKITRSMAAEVLNELGNSE 234 >gi|86357128|ref|YP_469020.1| hypothetical protein RHE_CH01490 [Rhizobium etli CFN 42] gi|86281230|gb|ABC90293.1| putative DNA replication initiation ATPase protein [Rhizobium etli CFN 42] Length = 237 Score = 283 bits (726), Expect = 1e-74, Method: Composition-based stats. Identities = 117/233 (50%), Positives = 153/233 (65%), Gaps = 1/233 (0%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPS 73 D + D + EQL +F RDDLL+ + AV ++D+WP+WPS VV+L GP Sbjct: 3 DVKNADPKRKAGEQLPLAFSHDAASGRDDLLISERLAAAVSIVDAWPAWPSPVVVLAGPV 62 Query: 74 GSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSI 133 GSGKS LA IW + S + D+ + PVL ED D L F+D LFH+INS+ Sbjct: 63 GSGKSHLARIWQELSGAVSIHP-GLGSDAAVAAAAGPVLFEDADRLGFDDNALFHVINSV 121 Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193 + +SLL+T+R +P+SW V LPDL SRLKAATVV+I PD+ L +VIVK+FADRQ++I Sbjct: 122 RENATSLLITSRLWPISWPVLLPDLRSRLKAATVVEIGEPDEVLLSQVIVKLFADRQLYI 181 Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 D KL YIV RMERSL A+ +V+++D LALSRG ITR+LAAEVL E + Sbjct: 182 DDKLVLYIVNRMERSLNAAQTIVERLDRLALSRGTKITRALAAEVLNELGNSE 234 >gi|218462578|ref|ZP_03502669.1| hypothetical protein RetlK5_25345 [Rhizobium etli Kim 5] Length = 237 Score = 283 bits (724), Expect = 2e-74, Method: Composition-based stats. Identities = 117/233 (50%), Positives = 150/233 (64%), Gaps = 1/233 (0%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPS 73 D + + EQL F RDDLL+ + AV ++D+WP WPS VV+L GP Sbjct: 3 DVKNVALKRKAAEQLSLLFSHDAASGRDDLLISERLAAAVSIVDAWPEWPSPVVVLAGPV 62 Query: 74 GSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSI 133 GSGKS LA IWS+ S + D+ + PVL ED D F+D LFH+INS+ Sbjct: 63 GSGKSHLARIWSELSGAVSIHP-ELGSDAAVAAAAGPVLFEDADRQGFDDNALFHVINSV 121 Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193 + +SLL+T+R +P+SW V LPDL SRLKAATVV+I PD+ L +VIVK+FADRQ++I Sbjct: 122 RENGTSLLITSRLWPMSWPVQLPDLRSRLKAATVVEIGEPDEALLSQVIVKLFADRQLYI 181 Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 D KL YIV RMERSL A+ +V+++D LALSRG ITRSLAAEVL E + Sbjct: 182 DDKLVLYIVNRMERSLNAAQTIVERLDRLALSRGTKITRSLAAEVLNELGNSE 234 >gi|239831548|ref|ZP_04679877.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301] gi|239823815|gb|EEQ95383.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301] Length = 246 Score = 282 bits (721), Expect = 4e-74, Method: Composition-based stats. Identities = 101/235 (42%), Positives = 147/235 (62%), Gaps = 5/235 (2%) Query: 17 KNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSG 76 + + Q+ + G R+DL+V + AV LID WP+W S V IL GP+GSG Sbjct: 11 QEAAMREAPRQIPLNLEHQPGYHREDLIVTGSNRAAVDLIDRWPNWLSPVTILAGPTGSG 70 Query: 77 KSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY 136 K+ LA IW + + + + +++ PVL++DI F++T LFH+INS+ Q Sbjct: 71 KTHLAEIWRAGTGALLVDPSSITEEAVNGAAEYPVLIDDIGATPFDETGLFHLINSVRQN 130 Query: 137 -----DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD L VI K+FADRQ+ Sbjct: 131 AAQGIGPSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDLLLSGVIHKLFADRQV 190 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 ++ + AY+V R+ERSL+ A ++VDK+D AL + ITR+LAA+VL +++Q + Sbjct: 191 SVEPHVVAYLVSRIERSLLSAIRIVDKLDRAALEQKSRITRTLAAQVLADSEQPE 245 >gi|153009901|ref|YP_001371116.1| hypothetical protein Oant_2574 [Ochrobactrum anthropi ATCC 49188] gi|151561789|gb|ABS15287.1| conserved hypothetical protein [Ochrobactrum anthropi ATCC 49188] Length = 232 Score = 281 bits (719), Expect = 7e-74, Method: Composition-based stats. Identities = 101/230 (43%), Positives = 144/230 (62%), Gaps = 5/230 (2%) Query: 22 KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 + Q+ + G R+D++V + AV LID WP+W S V IL GP+GSGK+ LA Sbjct: 2 REAPRQIPLNLEHQPGYHREDMIVTGSNRAAVDLIDRWPNWLSPVTILAGPTGSGKTHLA 61 Query: 82 NIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY----- 136 IW + + + +++ PVL++DI F++T LFH+INS+ Q Sbjct: 62 EIWRAGTGALLVDPTNITEEAVNGAAEYPVLIDDIGAAPFDETGLFHLINSVRQNAAQGL 121 Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196 SLLMT+R +P +W V LPDL SRLKAATVV+IS PDD L VI K+FADRQ+ ++ Sbjct: 122 GPSLLMTSRLWPANWNVKLPDLASRLKAATVVEISEPDDLLLSGVIHKLFADRQVSVEPH 181 Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + AY+V R+ERSL+ A ++VDK+D AL + ITR+LAA+VL ++Q + Sbjct: 182 VVAYLVSRIERSLLSAIQIVDKLDRAALEQKSRITRTLAAQVLAGSEQPE 231 >gi|227821508|ref|YP_002825478.1| hypothetical protein NGR_c09350 [Sinorhizobium fredii NGR234] gi|227340507|gb|ACP24725.1| chromosomal replication initiator, DnaA [Sinorhizobium fredii NGR234] Length = 229 Score = 281 bits (719), Expect = 7e-74, Method: Composition-based stats. Identities = 112/224 (50%), Positives = 154/224 (68%), Gaps = 1/224 (0%) Query: 22 KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 + EQL F R+DLLV + A+ ++D WP WPS VVI+ GP GSGKS LA Sbjct: 3 RRPNEQLPLVFGHDPATGREDLLVSDRLSAAIAIVDHWPEWPSPVVIIAGPVGSGKSHLA 62 Query: 82 NIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLL 141 +IW ++S + +A S ++ I KPVL ED+D F+DT LFH+INS+ Q ++LL Sbjct: 63 SIWRERSDAVAIHPVAGS-NAADIAASKPVLFEDVDRQGFDDTALFHVINSVRQNGTALL 121 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 MT+R +P+SW V LPDL SRLKAATVV+I PDD+ L +V+ K+FADRQ+ +D++ AYI Sbjct: 122 MTSRLWPMSWPVALPDLKSRLKAATVVEIGEPDDELLTQVLFKLFADRQLLVDERFVAYI 181 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 V RMERSL A+ +V+++D+ AL+RG +TR+LAAEVL+E Sbjct: 182 VNRMERSLEAAQTIVERLDHSALARGTRLTRALAAEVLEELANA 225 >gi|319784359|ref|YP_004143835.1| Chromosomal replication initiator DnaA [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170247|gb|ADV13785.1| Chromosomal replication initiator DnaA [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 234 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 101/227 (44%), Positives = 139/227 (61%), Gaps = 1/227 (0%) Query: 18 NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGK 77 QP + QL G SRD+L+V QAV L+D WP WPS VV+L GP+GSGK Sbjct: 2 TAQPTDPPRQLPLDLGHGTGYSRDELVVSGTNNQAVALVDRWPDWPSPVVVLAGPAGSGK 61 Query: 78 SCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYD 137 + LA+IW ++ + DSI +P L++D+D ++ LFH+IN++ Sbjct: 62 THLASIWRARANAAAVDARRIG-DSIANLGARPALIDDVDTGTVDEQGLFHLINAVRGAG 120 Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 S LL+TAR FP +WGV LPDL SRLKAA V+I PDD L VI K+FADRQI ++ + Sbjct: 121 SQLLLTARRFPSAWGVGLPDLASRLKAAATVEIHEPDDLLLAGVITKLFADRQIEVEPHV 180 Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 Y+V+R+ERSL A ++V+++D AL R ITR+LAAE + + Sbjct: 181 VQYLVRRIERSLATAMRVVERLDRTALERKTPITRALAAETVSAMDE 227 >gi|15964939|ref|NP_385292.1| hypothetical protein SMc00617 [Sinorhizobium meliloti 1021] gi|307301009|ref|ZP_07580778.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C] gi|307317743|ref|ZP_07597181.1| conserved hypothetical protein [Sinorhizobium meliloti AK83] gi|15074118|emb|CAC45765.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021] gi|306896505|gb|EFN27253.1| conserved hypothetical protein [Sinorhizobium meliloti AK83] gi|306903964|gb|EFN34550.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C] Length = 229 Score = 277 bits (708), Expect = 1e-72, Method: Composition-based stats. Identities = 113/224 (50%), Positives = 153/224 (68%), Gaps = 1/224 (0%) Query: 22 KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 ++ EQL F RDDLLV + A+ ++D WP+WPS VVI+ GP GSGKS LA Sbjct: 3 RHLSEQLPLVFGHAPATGRDDLLVSDRLSAAISIVDHWPAWPSPVVIICGPVGSGKSHLA 62 Query: 82 NIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLL 141 IW +K+R+ A S ++ I KPVL ED D F+D LFH+INS+ Q ++LL Sbjct: 63 GIWREKARAEPIHPFAGS-NAADIAAEKPVLFEDADRQGFDDAALFHVINSVRQNGTALL 121 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 MT+R +P+SW V LPDL SRLKAATVV+I PDD+ L +V+ K+FADRQ+ +D++L Y+ Sbjct: 122 MTSRLWPMSWPVGLPDLKSRLKAATVVEIGEPDDELLVQVLTKLFADRQLLVDERLVGYV 181 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 V RMERSL A+ +V+++D+LAL+RG TR+LAAEVL+E Sbjct: 182 VARMERSLEAAQTIVERIDHLALARGTRPTRALAAEVLEELANT 225 >gi|150396018|ref|YP_001326485.1| hypothetical protein Smed_0794 [Sinorhizobium medicae WSM419] gi|150027533|gb|ABR59650.1| conserved hypothetical protein [Sinorhizobium medicae WSM419] Length = 229 Score = 277 bits (708), Expect = 1e-72, Method: Composition-based stats. Identities = 112/221 (50%), Positives = 152/221 (68%), Gaps = 1/221 (0%) Query: 22 KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 + EQL +F RDDLLV + A+ ++D WP+WPS VVI+ GP GSGKS LA Sbjct: 3 RPLSEQLPLAFGHAPATGRDDLLVSDRLSAAISIVDHWPAWPSPVVIICGPVGSGKSHLA 62 Query: 82 NIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLL 141 IW +K+ + +A S D+ I KPVL ED D F++ LFH+INS+ Q ++LL Sbjct: 63 GIWREKAGAEPIHPVAGS-DAADIAAEKPVLFEDADRQGFDEAALFHVINSVRQNGTALL 121 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 MT+R +P+SW V LPDL SRLKAATVV+I PDD+ L +V+ K+FADRQ+F+D++L YI Sbjct: 122 MTSRLWPMSWPVELPDLKSRLKAATVVEIGEPDDELLMQVLTKLFADRQLFVDERLIGYI 181 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 V RMERSL A+ +V+++D+LAL+R TR+LAAEVL+ Sbjct: 182 VARMERSLEAAQTIVERIDHLALARATRPTRALAAEVLEAL 222 >gi|163759173|ref|ZP_02166259.1| hypothetical protein HPDFL43_05395 [Hoeflea phototrophica DFL-43] gi|162283577|gb|EDQ33862.1| hypothetical protein HPDFL43_05395 [Hoeflea phototrophica DFL-43] Length = 235 Score = 277 bits (708), Expect = 1e-72, Method: Composition-based stats. Identities = 100/208 (48%), Positives = 143/208 (68%) Query: 24 KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI 83 +QL +F RDDL+V ++ AV +ID WP WPS VVIL GP+GSGKS LA+I Sbjct: 7 PAQQLPLAFEHDPASGRDDLIVSESVGGAVTMIDRWPEWPSPVVILAGPTGSGKSHLASI 66 Query: 84 WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMT 143 W+D++ + R + A++ ++I PVL+ED+D +++T LFH+IN++ + ++ LMT Sbjct: 67 WADRTGAHRVNLGARANEAIAAAASGPVLIEDVDRTAYDETALFHLINAVRSHGATALMT 126 Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203 AR FP W V LPDL SRLKAATVV+I PD++ L +V+VK+FADRQ+ +D ++ ++V Sbjct: 127 ARQFPAGWNVALPDLASRLKAATVVEIGEPDEELLAQVMVKLFADRQLNVDDRIVRWLVA 186 Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGIT 231 RMERSL +VD +D LAL+RG IT Sbjct: 187 RMERSLAAVRHIVDGLDQLALARGSKIT 214 >gi|294852073|ref|ZP_06792746.1| hypothetical protein BAZG_00989 [Brucella sp. NVSL 07-0026] gi|294820662|gb|EFG37661.1| hypothetical protein BAZG_00989 [Brucella sp. NVSL 07-0026] Length = 236 Score = 275 bits (704), Expect = 4e-72, Method: Composition-based stats. Identities = 97/228 (42%), Positives = 146/228 (64%), Gaps = 5/228 (2%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 + Q+ + G +R+DL+V ++ AV LID WP+W S V IL GP+G+GK+ LA Sbjct: 8 DAPRQIPLNLEHQPGYNREDLIVTASNRAAVDLIDRWPNWLSPVTILAGPTGAGKTHLAE 67 Query: 83 IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY-----D 137 IW + + + +++ +PVL+++I F++T LFH+INS+ Q+ Sbjct: 68 IWRSGTDALLVDPSNITEEAVNSAAGRPVLIDNIGAEAFDETGLFHLINSVRQHAAQGPG 127 Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD L VI K+FADRQ+ ++ + Sbjct: 128 PSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDMLLSGVIHKLFADRQVSVEPHV 187 Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 +Y+V RMERSL+ A ++VD++D AL + ITR+LAA++L + Q Sbjct: 188 VSYLVSRMERSLLSAIQIVDRLDRAALEQKSRITRALAAQILADMGQA 235 >gi|306842022|ref|ZP_07474695.1| ATP/GTP-binding protein [Brucella sp. BO2] gi|306287863|gb|EFM59283.1| ATP/GTP-binding protein [Brucella sp. BO2] Length = 235 Score = 274 bits (702), Expect = 6e-72, Method: Composition-based stats. Identities = 97/228 (42%), Positives = 146/228 (64%), Gaps = 5/228 (2%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 + Q+ + G +R+DL+V ++ AV LID WP+W S V IL GP+G+GK+ LA Sbjct: 7 DAPRQIPLNLEHQPGYNREDLIVTASNRAAVDLIDRWPNWLSPVTILAGPTGAGKTHLAE 66 Query: 83 IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY-----D 137 IW + + + +++ +PVL+++I F++T LFH+INS+ Q+ Sbjct: 67 IWRSGTDALLVDPSNITEEAVNSAAERPVLIDNIGAEAFDETGLFHLINSVRQHAAQGPG 126 Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD L VI K+FADRQ+ ++ + Sbjct: 127 PSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDMLLSGVIHKLFADRQVSVEPHV 186 Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 +Y+V RMERSL+ A ++VD++D AL + ITR+LAA++L + Q Sbjct: 187 VSYLVSRMERSLLSAIQIVDRLDRAALEQKSRITRALAAQILADMGQA 234 >gi|260463359|ref|ZP_05811560.1| conserved hypothetical protein [Mesorhizobium opportunistum WSM2075] gi|259030949|gb|EEW32224.1| conserved hypothetical protein [Mesorhizobium opportunistum WSM2075] Length = 246 Score = 274 bits (702), Expect = 7e-72, Method: Composition-based stats. Identities = 99/220 (45%), Positives = 137/220 (62%), Gaps = 1/220 (0%) Query: 18 NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGK 77 Q + QL G SRD+L+V QA L+D WP WPS VV+L GP+GSGK Sbjct: 14 TAQRTDPPRQLPLDLGHGTGYSRDELVVSGTNSQAAALVDRWPDWPSPVVVLAGPAGSGK 73 Query: 78 SCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYD 137 + LA IW + + + DSI +P L++D+D ++ LFH+IN++ Sbjct: 74 THLAAIWRAHANAVAVDA-GRIGDSIANLGARPALIDDVDAGAVDEQGLFHLINAVRGAG 132 Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 S+LL+TAR FP +WGV LPDL SRLKAA V+I PDD L VI K+FADRQ+ ++ + Sbjct: 133 STLLLTARRFPAAWGVSLPDLASRLKAAATVEIHEPDDLLLAGVITKLFADRQVEVEPHV 192 Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237 Y+V+R+ERSL A ++V+++D +AL R M ITR+LAAE Sbjct: 193 VQYLVRRIERSLATAMRVVERLDRIALERKMPITRALAAE 232 >gi|110634313|ref|YP_674521.1| hypothetical protein Meso_1963 [Mesorhizobium sp. BNC1] gi|110285297|gb|ABG63356.1| regulatory inactivation of DnaA Hda protein [Chelativorans sp. BNC1] Length = 233 Score = 274 bits (701), Expect = 8e-72, Method: Composition-based stats. Identities = 95/220 (43%), Positives = 143/220 (65%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 QL G SR+DL+V A E AV L++SWP WP+ +V+L GP+GSGK+ LA+IW Sbjct: 7 PRQLPLDLAHTEGRSREDLVVTPANELAVALVESWPDWPAPIVVLAGPAGSGKTHLADIW 66 Query: 85 SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTA 144 D+S + S A +++ P+L++D D ++T LFH+IN + + LL+TA Sbjct: 67 CDQSGAFPVSATAIETEAMAAAEHGPILIDDADSPLLDETGLFHLINMVRGSHTHLLLTA 126 Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 R P +WGV LPDL SRLKAA V+I PDD L V +K+FADRQ+ ++ + ++++R Sbjct: 127 RHLPSAWGVKLPDLLSRLKAAAAVEIREPDDMLLTGVFIKLFADRQVAVEPHVVQFMLRR 186 Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 MERSL A ++V+++D +AL R + I+R+LAAE+L+ + Sbjct: 187 MERSLSAARRIVERLDRVALERKIRISRTLAAEILEGMDE 226 >gi|13476596|ref|NP_108166.1| hypothetical protein mlr7968 [Mesorhizobium loti MAFF303099] gi|14027358|dbj|BAB53627.1| mlr7968 [Mesorhizobium loti MAFF303099] Length = 234 Score = 274 bits (701), Expect = 8e-72, Method: Composition-based stats. Identities = 99/227 (43%), Positives = 138/227 (60%), Gaps = 1/227 (0%) Query: 18 NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGK 77 Q + QL G SRD+L+V QA L+D WP WPS VV+L GP+GSGK Sbjct: 2 TAQRTDPPRQLPLDLGHGTGYSRDELVVSGTNNQAAALVDRWPDWPSPVVVLAGPAGSGK 61 Query: 78 SCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYD 137 + LA IW ++ + DSI +P L++D+D ++ LFH+IN++ Sbjct: 62 THLAAIWRARANAVAVDARRIG-DSIAGLGARPALIDDVDAGAVDEQGLFHLINAVRGAG 120 Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 S+LL+TAR FP +WGV LPDL SRLKAA V+I PDD L VI K+FADRQ+ ++ + Sbjct: 121 STLLLTARRFPSAWGVSLPDLASRLKAAATVEIHEPDDLLLAGVITKLFADRQVEVEPHV 180 Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 Y+V+R+ERSL A ++V+++D AL R M ITR+LAAE + + Sbjct: 181 VQYLVRRIERSLATAMRVVERLDRTALERKMPITRALAAETVSAMDE 227 >gi|225627210|ref|ZP_03785248.1| ATP/GTP-binding protein [Brucella ceti str. Cudo] gi|261757927|ref|ZP_06001636.1| ATP/GTP-binding protein [Brucella sp. F5/99] gi|225618045|gb|EEH15089.1| ATP/GTP-binding protein [Brucella ceti str. Cudo] gi|261737911|gb|EEY25907.1| ATP/GTP-binding protein [Brucella sp. F5/99] Length = 236 Score = 274 bits (701), Expect = 8e-72, Method: Composition-based stats. Identities = 97/228 (42%), Positives = 146/228 (64%), Gaps = 5/228 (2%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 + Q+ + G +R+DL+V ++ AV LID WP+W S V IL GP+G+GK+ LA Sbjct: 8 DAPRQIPLNLEHQPGYNREDLIVTASNRAAVDLIDRWPNWLSPVTILAGPTGAGKTHLAE 67 Query: 83 IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY-----D 137 IW + + + +++ +PVL+++I F++T LFH+INS+ Q+ Sbjct: 68 IWRSGTDALLVDPSNITEEAVNSAAERPVLIDNIGAEAFDETGLFHLINSVRQHAAQGPG 127 Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD L VI K+FADRQ+ ++ + Sbjct: 128 PSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDMLLSGVIHKLFADRQVSVEPHV 187 Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 +Y+V RMERSL+ A ++VD++D AL + ITR+LAA++L + Q Sbjct: 188 VSYLVSRMERSLLSAIQIVDRLDRAALEQKSRITRALAAQILADMGQA 235 >gi|23501601|ref|NP_697728.1| hypothetical protein BR0714 [Brucella suis 1330] gi|23347516|gb|AAN29643.1| conserved hypothetical protein [Brucella suis 1330] Length = 231 Score = 273 bits (700), Expect = 1e-71, Method: Composition-based stats. Identities = 97/228 (42%), Positives = 146/228 (64%), Gaps = 5/228 (2%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 + Q+ + G +R+DL+V ++ AV LID WP+W S V IL GP+G+GK+ LA Sbjct: 3 DAPRQIPLNLEHQPGYNREDLIVTASNRAAVDLIDRWPNWLSPVTILAGPTGAGKTHLAE 62 Query: 83 IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY-----D 137 IW + + + +++ +PVL+++I F++T LFH+INS+ Q+ Sbjct: 63 IWRSGTDALLVDPSNITEEAVNSAAERPVLIDNIGAQAFDETGLFHLINSVRQHAAQGPG 122 Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD L VI K+FADRQ+ ++ + Sbjct: 123 PSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDMLLSGVIHKLFADRQVSVEPHV 182 Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 +Y+V RMERSL+ A ++VD++D AL + ITR+LAA++L + Q Sbjct: 183 VSYLVSRMERSLLSAIQIVDRLDRAALEQKSRITRALAAQILADMGQA 230 >gi|260563758|ref|ZP_05834244.1| ATP/GTP-binding protein [Brucella melitensis bv. 1 str. 16M] gi|260566710|ref|ZP_05837180.1| ATP/GTP-binding protein [Brucella suis bv. 4 str. 40] gi|261213721|ref|ZP_05928002.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya] gi|261218919|ref|ZP_05933200.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261221913|ref|ZP_05936194.1| conserved hypothetical protein [Brucella ceti B1/94] gi|261314524|ref|ZP_05953721.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261317373|ref|ZP_05956570.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261321582|ref|ZP_05960779.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|261754699|ref|ZP_05998408.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|265983834|ref|ZP_06096569.1| conserved hypothetical protein [Brucella sp. 83/13] gi|265988410|ref|ZP_06100967.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] gi|265990825|ref|ZP_06103382.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] gi|265997876|ref|ZP_06110433.1| conserved hypothetical protein [Brucella ceti M490/95/1] gi|265999530|ref|ZP_05466791.2| ATP/GTP-binding protein [Brucella melitensis bv. 2 str. 63/9] gi|260153774|gb|EEW88866.1| ATP/GTP-binding protein [Brucella melitensis bv. 1 str. 16M] gi|260156228|gb|EEW91308.1| ATP/GTP-binding protein [Brucella suis bv. 4 str. 40] gi|260915328|gb|EEX82189.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya] gi|260920497|gb|EEX87150.1| conserved hypothetical protein [Brucella ceti B1/94] gi|260924008|gb|EEX90576.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261294272|gb|EEX97768.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|261296596|gb|EEY00093.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261303550|gb|EEY07047.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261744452|gb|EEY32378.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|262552344|gb|EEZ08334.1| conserved hypothetical protein [Brucella ceti M490/95/1] gi|263001609|gb|EEZ14184.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] gi|263094519|gb|EEZ18328.1| ATP/GTP-binding protein [Brucella melitensis bv. 2 str. 63/9] gi|264660607|gb|EEZ30868.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] gi|264662426|gb|EEZ32687.1| conserved hypothetical protein [Brucella sp. 83/13] gi|326538455|gb|ADZ86670.1| conserved hypothetical protein [Brucella melitensis M5-90] Length = 235 Score = 273 bits (700), Expect = 1e-71, Method: Composition-based stats. Identities = 97/228 (42%), Positives = 146/228 (64%), Gaps = 5/228 (2%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 + Q+ + G +R+DL+V ++ AV LID WP+W S V IL GP+G+GK+ LA Sbjct: 7 DAPRQIPLNLEHQPGYNREDLIVTASNRAAVDLIDRWPNWLSPVTILAGPTGAGKTHLAE 66 Query: 83 IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY-----D 137 IW + + + +++ +PVL+++I F++T LFH+INS+ Q+ Sbjct: 67 IWRSGTDALLVDPSNITEEAVNSAAERPVLIDNIGAEAFDETGLFHLINSVRQHAAQGPG 126 Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD L VI K+FADRQ+ ++ + Sbjct: 127 PSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDMLLSGVIHKLFADRQVSVEPHV 186 Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 +Y+V RMERSL+ A ++VD++D AL + ITR+LAA++L + Q Sbjct: 187 VSYLVSRMERSLLSAIQIVDRLDRAALEQKSRITRALAAQILADMGQA 234 >gi|17987521|ref|NP_540155.1| hypothetical protein BMEI1238 [Brucella melitensis bv. 1 str. 16M] gi|148559701|ref|YP_001258694.1| hypothetical protein BOV_0704 [Brucella ovis ATCC 25840] gi|161618684|ref|YP_001592571.1| hypothetical protein BCAN_A0727 [Brucella canis ATCC 23365] gi|225852234|ref|YP_002732467.1| hypothetical protein BMEA_A0751 [Brucella melitensis ATCC 23457] gi|254688983|ref|ZP_05152237.1| ATP/GTP-binding protein [Brucella abortus bv. 6 str. 870] gi|254693465|ref|ZP_05155293.1| ATP/GTP-binding protein [Brucella abortus bv. 3 str. Tulya] gi|254697117|ref|ZP_05158945.1| ATP/GTP-binding protein [Brucella abortus bv. 2 str. 86/8/59] gi|254704042|ref|ZP_05165870.1| ATP/GTP-binding protein [Brucella suis bv. 3 str. 686] gi|254707056|ref|ZP_05168884.1| ATP/GTP-binding protein [Brucella pinnipedialis M163/99/10] gi|254709834|ref|ZP_05171645.1| ATP/GTP-binding protein [Brucella pinnipedialis B2/94] gi|254713836|ref|ZP_05175647.1| ATP/GTP-binding protein [Brucella ceti M644/93/1] gi|254717106|ref|ZP_05178917.1| ATP/GTP-binding protein [Brucella ceti M13/05/1] gi|254718849|ref|ZP_05180660.1| ATP/GTP-binding protein [Brucella sp. 83/13] gi|254730013|ref|ZP_05188591.1| ATP/GTP-binding protein [Brucella abortus bv. 4 str. 292] gi|256031324|ref|ZP_05444938.1| ATP/GTP-binding protein [Brucella pinnipedialis M292/94/1] gi|256044405|ref|ZP_05447309.1| ATP/GTP-binding protein [Brucella melitensis bv. 1 str. Rev.1] gi|256159444|ref|ZP_05457216.1| ATP/GTP-binding protein [Brucella ceti M490/95/1] gi|256254733|ref|ZP_05460269.1| ATP/GTP-binding protein [Brucella ceti B1/94] gi|256257231|ref|ZP_05462767.1| ATP/GTP-binding protein [Brucella abortus bv. 9 str. C68] gi|256369148|ref|YP_003106656.1| hypothetical protein BMI_I709 [Brucella microti CCM 4915] gi|260168462|ref|ZP_05755273.1| ATP/GTP-binding protein [Brucella sp. F5/99] gi|260757694|ref|ZP_05870042.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292] gi|306838771|ref|ZP_07471605.1| ATP/GTP-binding protein [Brucella sp. NF 2653] gi|306843674|ref|ZP_07476274.1| ATP/GTP-binding protein [Brucella sp. BO1] gi|17983222|gb|AAL52419.1| insertion sequence is21 putative ATP-binding protein [Brucella melitensis bv. 1 str. 16M] gi|148370958|gb|ABQ60937.1| conserved hypothetical protein [Brucella ovis ATCC 25840] gi|161335495|gb|ABX61800.1| Hypothetical protein BCAN_A0727 [Brucella canis ATCC 23365] gi|225640599|gb|ACO00513.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457] gi|255999308|gb|ACU47707.1| hypothetical protein BMI_I709 [Brucella microti CCM 4915] gi|260668012|gb|EEX54952.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292] gi|306275984|gb|EFM57693.1| ATP/GTP-binding protein [Brucella sp. BO1] gi|306406173|gb|EFM62418.1| ATP/GTP-binding protein [Brucella sp. NF 2653] gi|326408735|gb|ADZ65800.1| ATP/GTP-binding protein [Brucella melitensis M28] Length = 231 Score = 273 bits (700), Expect = 1e-71, Method: Composition-based stats. Identities = 97/228 (42%), Positives = 146/228 (64%), Gaps = 5/228 (2%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 + Q+ + G +R+DL+V ++ AV LID WP+W S V IL GP+G+GK+ LA Sbjct: 3 DAPRQIPLNLEHQPGYNREDLIVTASNRAAVDLIDRWPNWLSPVTILAGPTGAGKTHLAE 62 Query: 83 IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY-----D 137 IW + + + +++ +PVL+++I F++T LFH+INS+ Q+ Sbjct: 63 IWRSGTDALLVDPSNITEEAVNSAAERPVLIDNIGAEAFDETGLFHLINSVRQHAAQGPG 122 Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD L VI K+FADRQ+ ++ + Sbjct: 123 PSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDMLLSGVIHKLFADRQVSVEPHV 182 Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 +Y+V RMERSL+ A ++VD++D AL + ITR+LAA++L + Q Sbjct: 183 VSYLVSRMERSLLSAIQIVDRLDRAALEQKSRITRALAAQILADMGQA 230 >gi|163842986|ref|YP_001627390.1| hypothetical protein BSUIS_A0745 [Brucella suis ATCC 23445] gi|163673709|gb|ABY37820.1| Hypothetical protein BSUIS_A0745 [Brucella suis ATCC 23445] Length = 231 Score = 273 bits (698), Expect = 2e-71, Method: Composition-based stats. Identities = 97/228 (42%), Positives = 146/228 (64%), Gaps = 5/228 (2%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 + Q+ + G +R+DL+V ++ AV LID WP+W S V IL GP+G+GK+ LA Sbjct: 3 DAPRQIPLNLEHQPGYNREDLIVTASNRAAVDLIDRWPNWLSPVTILAGPTGAGKTHLAE 62 Query: 83 IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY-----D 137 IW + + + +++ +PVL+++I F++T LFH+INS+ Q+ Sbjct: 63 IWRSGTDALLLDPSNITEEAVNSAAERPVLIDNIGAEAFDETGLFHLINSVRQHAAQGPG 122 Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD L VI K+FADRQ+ ++ + Sbjct: 123 PSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDMLLSGVIHKLFADRQVSVEPHV 182 Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 +Y+V RMERSL+ A ++VD++D AL + ITR+LAA++L + Q Sbjct: 183 VSYLVSRMERSLLSAIQIVDRLDRAALEQKSRITRALAAQILADMGQA 230 >gi|265994659|ref|ZP_06107216.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|262765772|gb|EEZ11561.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] Length = 235 Score = 272 bits (697), Expect = 2e-71, Method: Composition-based stats. Identities = 97/228 (42%), Positives = 146/228 (64%), Gaps = 5/228 (2%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 + Q+ + G +R+DL+V ++ AV LID WP+W S V IL GP+G+GK+ LA Sbjct: 7 DAPRQIPLNLEYQPGYNREDLIVTASNRAAVDLIDRWPNWLSPVTILAGPTGAGKTHLAE 66 Query: 83 IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY-----D 137 IW + + + +++ +PVL+++I F++T LFH+INS+ Q+ Sbjct: 67 IWRSGTDALLVDPSNITEEAVNSAAERPVLIDNIGAEAFDETGLFHLINSVRQHAAQGPG 126 Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD L VI K+FADRQ+ ++ + Sbjct: 127 PSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDMLLSGVIHKLFADRQVSVEPHV 186 Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 +Y+V RMERSL+ A ++VD++D AL + ITR+LAA++L + Q Sbjct: 187 VSYLVSRMERSLLSAIQIVDRLDRAALEQKSRITRALAAQILADMGQA 234 >gi|256113248|ref|ZP_05454116.1| ATP/GTP-binding protein [Brucella melitensis bv. 3 str. Ether] Length = 231 Score = 272 bits (697), Expect = 2e-71, Method: Composition-based stats. Identities = 97/228 (42%), Positives = 146/228 (64%), Gaps = 5/228 (2%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 + Q+ + G +R+DL+V ++ AV LID WP+W S V IL GP+G+GK+ LA Sbjct: 3 DAPRQIPLNLEYQPGYNREDLIVTASNRAAVDLIDRWPNWLSPVTILAGPTGAGKTHLAE 62 Query: 83 IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY-----D 137 IW + + + +++ +PVL+++I F++T LFH+INS+ Q+ Sbjct: 63 IWRSGTDALLVDPSNITEEAVNSAAERPVLIDNIGAEAFDETGLFHLINSVRQHAAQGPG 122 Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD L VI K+FADRQ+ ++ + Sbjct: 123 PSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDMLLSGVIHKLFADRQVSVEPHV 182 Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 +Y+V RMERSL+ A ++VD++D AL + ITR+LAA++L + Q Sbjct: 183 VSYLVSRMERSLLSAIQIVDRLDRAALEQKSRITRALAAQILADMGQA 230 >gi|92117644|ref|YP_577373.1| hypothetical protein Nham_2116 [Nitrobacter hamburgensis X14] gi|91800538|gb|ABE62913.1| regulatory inactivation of DnaA Hda protein [Nitrobacter hamburgensis X14] Length = 226 Score = 272 bits (697), Expect = 3e-71, Method: Composition-based stats. Identities = 83/223 (37%), Positives = 129/223 (57%), Gaps = 1/223 (0%) Query: 20 QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSC 79 + + QL F P +SRDD L A A+ LI+SWP WP+RV++L GP G GKS Sbjct: 2 AGRPRPRQLAFVLPHAESLSRDDFLEGPANAAALSLIESWPEWPNRVMLLAGPEGCGKSH 61 Query: 80 LANIWSDKSRSTRFSNIAKSLDSILID-TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDS 138 LA IW++++ + S + ++ +++EDI+ F++ LFH++N + + Sbjct: 62 LATIWAEQAGARSISAHGLTAAAVPGALATGALVVEDINPHAFDELALFHLMNLAREDGA 121 Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198 +LMTAR P + + L DL SRL+A VV + PDD L +I+K ADRQ+ ID+ + Sbjct: 122 FVLMTARVPPAAIEIGLRDLQSRLRAVPVVTLMPPDDQLLRALIIKFCADRQMSIDETVV 181 Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 +I R ERS A ++++D +L G +TR+LAAE+L+ Sbjct: 182 HFIATRTERSFAAARHAIERLDAESLRLGRPVTRALAAELLRN 224 >gi|254464534|ref|ZP_05077945.1| chromosomal replication initiator, DnaA [Rhodobacterales bacterium Y4I] gi|206685442|gb|EDZ45924.1| chromosomal replication initiator, DnaA [Rhodobacterales bacterium Y4I] Length = 235 Score = 272 bits (696), Expect = 3e-71, Method: Composition-based stats. Identities = 74/222 (33%), Positives = 122/222 (54%), Gaps = 3/222 (1%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 +QL F P + R+D V + AV L+D +WPS ++L GP G+GKS LA++W Sbjct: 2 AQQLSFDLPAKPALGREDFFVAPSNAMAVALLDPQFAWPSGKLVLTGPKGAGKSHLAHVW 61 Query: 85 SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLL 141 + ++ + + ++ P+ +ED+ + + LFH+ N + +L+ Sbjct: 62 ASQTGARIVPAAKLTAGAVPELAHGPIAVEDVPQIAADPERQNALFHLHNLVLAQGHALV 121 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 MT + P WG+ LPDL SR++AAT ++ PDD L V+ K+F DRQI + Y+ Sbjct: 122 MTGQPAPNLWGLSLPDLQSRVQAATHAELQPPDDQLLAVVLAKLFNDRQITPKPDVIPYL 181 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 V M+RS A ++V ++D+L+L+ +TR LA VL E++ Sbjct: 182 VAHMDRSFAAAAQMVRRLDHLSLAEKRSLTRPLAVRVLSESR 223 >gi|261752040|ref|ZP_05995749.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] gi|261741793|gb|EEY29719.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] Length = 235 Score = 272 bits (696), Expect = 3e-71, Method: Composition-based stats. Identities = 96/228 (42%), Positives = 145/228 (63%), Gaps = 5/228 (2%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 + Q+ + G +R+DL+V ++ AV LID WP+W V IL GP+G+GK+ LA Sbjct: 7 DAPRQIPLNLEHQPGYNREDLIVTASNRAAVDLIDRWPNWLLPVTILAGPTGAGKTHLAE 66 Query: 83 IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY-----D 137 IW + + + +++ +PVL+++I F++T LFH+INS+ Q+ Sbjct: 67 IWRSGTDALLVDPSNITEEAVNSAAERPVLIDNIGAEAFDETGLFHLINSVRQHAAQGPG 126 Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD L VI K+FADRQ+ ++ + Sbjct: 127 PSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDMLLSGVIHKLFADRQVSVEPHV 186 Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 +Y+V RMERSL+ A ++VD++D AL + ITR+LAA++L + Q Sbjct: 187 VSYLVSRMERSLLSAIQIVDRLDRAALEQKSRITRALAAQILADMGQA 234 >gi|254701495|ref|ZP_05163323.1| ATP/GTP-binding protein [Brucella suis bv. 5 str. 513] Length = 231 Score = 272 bits (696), Expect = 3e-71, Method: Composition-based stats. Identities = 96/228 (42%), Positives = 145/228 (63%), Gaps = 5/228 (2%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 + Q+ + G +R+DL+V ++ AV LID WP+W V IL GP+G+GK+ LA Sbjct: 3 DAPRQIPLNLEHQPGYNREDLIVTASNRAAVDLIDRWPNWLLPVTILAGPTGAGKTHLAE 62 Query: 83 IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY-----D 137 IW + + + +++ +PVL+++I F++T LFH+INS+ Q+ Sbjct: 63 IWRSGTDALLVDPSNITEEAVNSAAERPVLIDNIGAEAFDETGLFHLINSVRQHAAQGPG 122 Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD L VI K+FADRQ+ ++ + Sbjct: 123 PSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDMLLSGVIHKLFADRQVSVEPHV 182 Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 +Y+V RMERSL+ A ++VD++D AL + ITR+LAA++L + Q Sbjct: 183 VSYLVSRMERSLLSAIQIVDRLDRAALEQKSRITRALAAQILADMGQA 230 >gi|261324830|ref|ZP_05964027.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261300810|gb|EEY04307.1| conserved hypothetical protein [Brucella neotomae 5K33] Length = 235 Score = 272 bits (695), Expect = 5e-71, Method: Composition-based stats. Identities = 97/228 (42%), Positives = 145/228 (63%), Gaps = 5/228 (2%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 + Q+ + G +R+DL+V ++ AV LID WP+W S V IL GP+G+GK+ LA Sbjct: 7 DAPRQIPLNLEHQPGYNREDLIVTASNRAAVDLIDRWPNWLSPVTILAGPTGAGKTHLAE 66 Query: 83 IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY-----D 137 IW + + + ++ +PVL+++I F++T LFH+INS+ Q+ Sbjct: 67 IWRSGTDALLVDPSNITEAAVNSAAERPVLIDNIGAEAFDETGLFHLINSVRQHAAQGPG 126 Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD L VI K+FADRQ+ ++ + Sbjct: 127 PSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDILLSGVIHKLFADRQVSVEPHV 186 Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 +Y+V RMERSL+ A ++VD++D AL + ITR+LAA++L + Q Sbjct: 187 VSYLVSRMERSLLSAIQIVDRLDRAALEQKSRITRALAAQILADMGQA 234 >gi|126728914|ref|ZP_01744729.1| hypothetical protein SSE37_08803 [Sagittula stellata E-37] gi|126710844|gb|EBA09895.1| hypothetical protein SSE37_08803 [Sagittula stellata E-37] Length = 233 Score = 272 bits (695), Expect = 5e-71, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 112/226 (49%), Gaps = 3/226 (1%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 +QL P + R+D V A AV LID W WP +++ GP GSGK+ LA+ Sbjct: 2 KGPKQLPLPLPAREALGREDFFVSEANAMAVALIDRWSEWPGAKMVICGPRGSGKTHLAH 61 Query: 83 IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSS 139 +W+ S + + + I P+ +ED++ + + + LFH+ N Sbjct: 62 VWAKLSGARILNADTLAGADIPDLAAAPLCVEDVERIAGDRPAEEALFHLHNLALAQGHQ 121 Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199 LLMTA P W + LPDL SR+ A V ++ PDD L ++ K FADRQI ++ + Sbjct: 122 LLMTAEREPSLWPLVLPDLKSRIMGAQVARLGAPDDALLTALLAKQFADRQITPGPEVLS 181 Query: 200 YIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 Y+ + M RS A +V +D +L+ +TRS+AA VL Sbjct: 182 YLTRHMPRSHAAARDVVAALDESSLADKKRVTRSMAAAVLARMASA 227 >gi|256060837|ref|ZP_05450997.1| ATP/GTP-binding protein [Brucella neotomae 5K33] Length = 231 Score = 271 bits (694), Expect = 5e-71, Method: Composition-based stats. Identities = 97/228 (42%), Positives = 145/228 (63%), Gaps = 5/228 (2%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 + Q+ + G +R+DL+V ++ AV LID WP+W S V IL GP+G+GK+ LA Sbjct: 3 DAPRQIPLNLEHQPGYNREDLIVTASNRAAVDLIDRWPNWLSPVTILAGPTGAGKTHLAE 62 Query: 83 IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY-----D 137 IW + + + ++ +PVL+++I F++T LFH+INS+ Q+ Sbjct: 63 IWRSGTDALLVDPSNITEAAVNSAAERPVLIDNIGAEAFDETGLFHLINSVRQHAAQGPG 122 Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 SLLMT+R +P +W V LPDL SRLKAATVV+I+ PDD L VI K+FADRQ+ ++ + Sbjct: 123 PSLLMTSRLWPANWNVKLPDLASRLKAATVVEIAEPDDILLSGVIHKLFADRQVSVEPHV 182 Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 +Y+V RMERSL+ A ++VD++D AL + ITR+LAA++L + Q Sbjct: 183 VSYLVSRMERSLLSAIQIVDRLDRAALEQKSRITRALAAQILADMGQA 230 >gi|126739191|ref|ZP_01754885.1| hypothetical protein RSK20926_22364 [Roseobacter sp. SK209-2-6] gi|126719808|gb|EBA16516.1| hypothetical protein RSK20926_22364 [Roseobacter sp. SK209-2-6] Length = 235 Score = 270 bits (692), Expect = 8e-71, Method: Composition-based stats. Identities = 75/218 (34%), Positives = 119/218 (54%), Gaps = 3/218 (1%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 +QL F P + RDD V + AV L+D +WPS ++L GP+GSGKS LA++W Sbjct: 2 AKQLSFDLPAKPALGRDDFFVAPSNAMAVALLDPSFAWPSGKLVLTGPAGSGKSHLAHVW 61 Query: 85 SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLL 141 + +S + + + + V++ED+ + + LFH+ N + +L+ Sbjct: 62 ASQSGANILQAADIHEELVPDFAQGSVVIEDVPRIAGDQVAQNALFHLHNLVLANGHALM 121 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 +T R P W + LPDL SR++AAT ++ PDD L V+ K+F DRQ+ + Y+ Sbjct: 122 LTGRAAPNLWQLTLPDLQSRVQAATHAELQPPDDALLSVVLAKLFNDRQVTPKPDVIPYL 181 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 V M+RS A +VD++D LALS G ++R LA ++ Sbjct: 182 VAHMDRSFAAAADIVDQLDRLALSEGRTLSRPLAIRLM 219 >gi|222148179|ref|YP_002549136.1| hypothetical protein Avi_1578 [Agrobacterium vitis S4] gi|221735167|gb|ACM36130.1| conserved hypothetical protein [Agrobacterium vitis S4] Length = 240 Score = 270 bits (691), Expect = 1e-70, Method: Composition-based stats. Identities = 111/221 (50%), Positives = 153/221 (69%), Gaps = 1/221 (0%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 EQL + RDDLLV + AV ++D+WP+WPS VVIL GP GSGKS LA IW Sbjct: 20 EQLPLALGHRPASGRDDLLVSGRLAAAVSVVDAWPNWPSPVVILSGPQGSGKSHLAEIWR 79 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTAR 145 +S + ++ + D+ + +R VL ED D DF++ +LFH+INS+ Q+ +SLL+T+R Sbjct: 80 TQSGAVDILPLSGA-DASMTASRGAVLFEDADRADFDEVELFHVINSVKQHGTSLLITSR 138 Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 T+P+SW V L DL SRLKAAT+V+I PD+ L +VIVK+FADRQ+ ID+++ YIVQRM Sbjct: 139 TWPLSWPVKLADLRSRLKAATLVEIGEPDEALLSQVIVKLFADRQLAIDERVVDYIVQRM 198 Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 ERSL A+ +V+++D LAL+R I+R+LAAEVL D Sbjct: 199 ERSLAAAQAVVEQLDRLALARRAKISRALAAEVLDAVVAHD 239 >gi|49475708|ref|YP_033749.1| hypothetical protein BH09540 [Bartonella henselae str. Houston-1] gi|49238515|emb|CAF27747.1| hypothetical protein BH09540 [Bartonella henselae str. Houston-1] Length = 229 Score = 270 bits (691), Expect = 1e-70, Method: Composition-based stats. Identities = 88/227 (38%), Positives = 131/227 (57%), Gaps = 5/227 (2%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 +E QL +F DDL+V + A +LID WP+W + +LVG GSGK+ ++ Sbjct: 3 KRETQLPLNFSYNPIFQFDDLVVTESNRMAFQLIDHWPNWILPIAVLVGKEGSGKTHFSS 62 Query: 83 IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY-----D 137 +W++K+ + RF + + + L+EDIDL + ++T LFH+INS+ Q Sbjct: 63 VWAEKADALRFHRNEIDQAIAVASSGRSFLIEDIDLGEISETGLFHLINSVKQANLDMCQ 122 Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 ++LLMTART P +W + L DL SRL + +V I+ PDD L V K+F+DRQI + Sbjct: 123 ATLLMTARTVPSTWNLKLNDLKSRLNSIMLVAINQPDDALLTAVAFKLFSDRQITVHPDT 182 Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 Y+V R ERSL ++++D +D LAL R ITR++ EVL Q Sbjct: 183 VYYLVNRCERSLFSLKRVIDSVDRLALQRKSKITRAVIGEVLNMQVQ 229 >gi|163868487|ref|YP_001609696.1| hypothetical protein Btr_1339 [Bartonella tribocorum CIP 105476] gi|161018143|emb|CAK01701.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476] Length = 229 Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats. Identities = 87/224 (38%), Positives = 127/224 (56%), Gaps = 5/224 (2%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 +E QL +FP DDL+V + A +LID WP+W + +LVG GSGK+ ++ Sbjct: 3 GRETQLSLNFPYKPIFQFDDLVVTDSNRMAFQLIDHWPNWSLPIAVLVGKEGSGKTHFSS 62 Query: 83 IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY-----D 137 IW K+ + R + P L+EDID + N+T+LFH+INS+ Q Sbjct: 63 IWLQKANAFRIQRNKIDQAVAMASLGSPFLIEDIDAGEINETELFHLINSVKQANIDARQ 122 Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 ++LLMTA+T P +W + L DL SRL + V+I+ PDD L V K+F+DRQ+ + Sbjct: 123 ATLLMTAQTLPSAWNLKLNDLKSRLNSVMFVEINQPDDALLTAVAFKLFSDRQLIVHPDT 182 Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 Y++ R ERSL + ++D +D LAL R ITR++ AEVL Sbjct: 183 VYYLISRCERSLFSLKHVIDSVDQLALQRKRKITRAVIAEVLNR 226 >gi|49474323|ref|YP_032365.1| hypothetical protein BQ07360 [Bartonella quintana str. Toulouse] gi|49239827|emb|CAF26220.1| hypothetical protein BQ07360 [Bartonella quintana str. Toulouse] Length = 229 Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats. Identities = 87/227 (38%), Positives = 127/227 (55%), Gaps = 5/227 (2%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 +E QL F DDL+V + A +LID WP+W + +LVG GSGK+ ++ Sbjct: 3 ERETQLPLDFSYNPVFQFDDLVVTESNRMAFQLIDHWPNWILPIAVLVGKEGSGKTHFSS 62 Query: 83 IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY-----D 137 IW+ K+ + R + + K L+EDID + ++T LFH+IN++ Q Sbjct: 63 IWAQKTDALRLHRNEIDQAIAIGSSGKSFLIEDIDAGEISETGLFHLINNVKQANLDTRQ 122 Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 ++LL+TART P +W + L DL SRL + +VKI+ PDD L V K+F+DRQI + Sbjct: 123 ATLLITARTVPSAWNLKLNDLKSRLNSVMLVKINQPDDALLTAVAFKLFSDRQIIVHPDT 182 Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 Y+V R ERSL + ++D +D LAL R ITR++ EVL Q Sbjct: 183 VYYLVSRCERSLFSLKHVIDSVDRLALQRKSKITRAVIGEVLNMQIQ 229 >gi|85703787|ref|ZP_01034891.1| hypothetical protein ROS217_23637 [Roseovarius sp. 217] gi|85672715|gb|EAQ27572.1| hypothetical protein ROS217_23637 [Roseovarius sp. 217] Length = 224 Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 119/221 (53%), Gaps = 3/221 (1%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 QL F P + R+D V A +AV +IDSW +WPSR +IL GP+GSGK+ LA++W Sbjct: 3 PHQLSFDLPVRPALGREDFFVSPANAEAVAMIDSWETWPSRKLILAGPTGSGKTHLAHVW 62 Query: 85 SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLL 141 + S + + + I P+ +ED + N + LFH+ N ++L Sbjct: 63 AALSGARIIAAADLADADIPALALSPLAIEDAEQTAGNRAAEEALFHLHNLSLAEGHTIL 122 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 +TA P W + LPDL SR++ V ++ PDD L V+ K+FADRQI Y+ Sbjct: 123 LTAERPPHLWPLRLPDLMSRMQGTLVTQLRAPDDALLAAVLTKLFADRQIAPSPDTVPYL 182 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +R++RS ++V+ +D AL+ ITR+ AA+VL + Sbjct: 183 SRRIDRSFAAVREVVETLDAAALAERRAITRAFAAQVLDKM 223 >gi|328543999|ref|YP_004304108.1| ATP/GTP-binding protein [polymorphum gilvum SL003B-26A1] gi|326413743|gb|ADZ70806.1| ATP/GTP-binding protein [Polymorphum gilvum SL003B-26A1] Length = 227 Score = 269 bits (688), Expect = 3e-70, Method: Composition-based stats. Identities = 92/225 (40%), Positives = 137/225 (60%), Gaps = 2/225 (0%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 + QL P + RDD LV ++ A LIDSWP WPS VV+L GP GSGKS L Sbjct: 3 ERPRQLPLILPHEQALGRDDYLVGASNRAAFELIDSWPDWPSAVVVLAGPVGSGKSHLVQ 62 Query: 83 IWSDKSRSTRFSNIAKSLDSI-LIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLL 141 IW ++S + + + + + V +E+ ++ LFH++N+ Q +S+L Sbjct: 63 IWHERSGAAVIEAGDLTEGRVEELVSAGAVAVENAHR-GVDERALFHLLNAARQAGASML 121 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 +T+RT+P +W + L DL SRL+AAT V+I PDDD L +V+VK+FADRQ+ ++ + Y+ Sbjct: 122 ITSRTWPAAWPLALADLVSRLRAATPVEILEPDDDLLRRVLVKLFADRQLAVEPAVVDYL 181 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 V RMERSL A ++V+ +D AL+ G ITR LA +VL++ Q + Sbjct: 182 VVRMERSLGVAGRVVEAIDREALANGSRITRPLAGKVLEQIQAGE 226 >gi|149914374|ref|ZP_01902905.1| prolyl-tRNA synthetase [Roseobacter sp. AzwK-3b] gi|149811893|gb|EDM71726.1| prolyl-tRNA synthetase [Roseobacter sp. AzwK-3b] Length = 222 Score = 269 bits (688), Expect = 3e-70, Method: Composition-based stats. Identities = 79/220 (35%), Positives = 119/220 (54%), Gaps = 3/220 (1%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 EQL F P + RDD V A +AV LI+ W WPSR ++LVGP GSGK+ LA++W Sbjct: 3 PEQLSFDLPVREALGRDDFFVSPANAEAVALIEGWRGWPSRKLLLVGPPGSGKTHLAHVW 62 Query: 85 SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLL 141 + + + + A + I + +ED D + + + LFH+ N ++L Sbjct: 63 ATLADARIIAAHALTRADIPALATGHIAVEDCDDIARDAAAEEALFHLHNLALAEGHTVL 122 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 TA P WG+ LPDL SR++ + PDD L V++K+ DRQ+ + Y+ Sbjct: 123 FTAARAPQHWGLSLPDLASRMQGTPATILHEPDDTLLAAVLMKLMTDRQLSPSPETIPYL 182 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 +R++RS A +VD +D LAL+ G I R+LAA+VL + Sbjct: 183 TRRIDRSFEAARDVVDALDALALATGRPINRALAAKVLDK 222 >gi|114769541|ref|ZP_01447167.1| hypothetical protein OM2255_07405 [alpha proteobacterium HTCC2255] gi|114550458|gb|EAU53339.1| hypothetical protein OM2255_07405 [alpha proteobacterium HTCC2255] Length = 231 Score = 268 bits (687), Expect = 4e-70, Method: Composition-based stats. Identities = 78/219 (35%), Positives = 123/219 (56%), Gaps = 3/219 (1%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 +QL F P R+D V S+ AV+++++W +WP +IL+GPSGSGKS LANIW Sbjct: 2 PDQLTFDLPIKTAFGREDFFVTSSNSTAVKILENWKNWPLSKLILIGPSGSGKSHLANIW 61 Query: 85 SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLL 141 ++ + R + + ++ + LE +++ N + FH+ N + + LL Sbjct: 62 TEMTNGVRIEAKYLMDIDLQVASQSALCLEGFEVIAGNQELEAHAFHLHNLAQESGAPLL 121 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 +T + P +W + LPDL SR++ +V ++ PDD L V++K F DRQI ID K+ Y+ Sbjct: 122 ITGCSTPSTWNLLLPDLLSRIQGTSVAQLQSPDDVLLNAVLIKQFNDRQIAIDPKVVTYL 181 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 ++RMERS LV+++D AL G I+ LA VL Sbjct: 182 LKRMERSFASISYLVNELDKGALKVGKPISIKLARNVLD 220 >gi|260426335|ref|ZP_05780314.1| chromosomal replication initiator, DnaA [Citreicella sp. SE45] gi|260420827|gb|EEX14078.1| chromosomal replication initiator, DnaA [Citreicella sp. SE45] Length = 233 Score = 268 bits (686), Expect = 5e-70, Method: Composition-based stats. Identities = 73/222 (32%), Positives = 115/222 (51%), Gaps = 3/222 (1%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 +QL P + R+D V + AV L+D W +WP+R ++LVGP G+GK+ LA+ Sbjct: 2 TGPDQLPLPLPVRPALGREDYFVSRSNGLAVALMDDWRNWPNRKLVLVGPHGAGKTHLAH 61 Query: 83 IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSS 139 +W+ ++ + I P+ +ED+ + + + LFH+ N Sbjct: 62 VWAAETGAVIVPAKGLETADIPALANGPLCVEDVPAIAGDRPAEEALFHLHNLTLAQGQP 121 Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199 L++TA+T P W + +PDL SR++ + PDD L V+ K+ ADRQ + Sbjct: 122 LMVTAQTPPALWPLVIPDLKSRMEGTQTATLPNPDDTLLSAVLAKLLADRQCVPAPDVIP 181 Query: 200 YIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 Y+V+ M RS A +LV +D A++R GITR+LA EVL Sbjct: 182 YLVRHMPRSFAMARELVSALDAHAMTRPKGITRALAREVLSR 223 >gi|40063570|gb|AAR38359.1| conserved hypothetical protein [uncultured marine bacterium 582] Length = 227 Score = 267 bits (683), Expect = 1e-69, Method: Composition-based stats. Identities = 76/221 (34%), Positives = 129/221 (58%), Gaps = 3/221 (1%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL F P + RDD + + AV +ID+W W S+ ++L GP G+GK+ L+++W+ Sbjct: 4 QLSFDLPARAALGRDDFFISPSNRIAVSMIDNWTDWSSQKLLLTGPEGAGKTHLSHVWAR 63 Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMT 143 +S +T D++ + PV +E++ + T LF++ N + S+L T Sbjct: 64 QSGATIIDATELQDDAVPKLSSGPVAVENVHTIAGLDAQQTALFYLHNLCLETGQSILFT 123 Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203 R P W + LPDL SRL+ A +V+++ PDD L+ V++K+F DRQ+ +L Y+V+ Sbjct: 124 GRGEPQHWLLTLPDLESRLRGAPLVQLNPPDDALLKAVLIKLFGDRQLSPSPELITYVVR 183 Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 R++RS A+KLV +D L+L+ ++R LAA +L+ +Q+ Sbjct: 184 RIDRSFDAAQKLVVALDTLSLAEKRPLSRRLAARLLEPSQE 224 >gi|118590150|ref|ZP_01547553.1| hypothetical protein SIAM614_11568 [Stappia aggregata IAM 12614] gi|118437122|gb|EAV43760.1| hypothetical protein SIAM614_11568 [Stappia aggregata IAM 12614] Length = 226 Score = 267 bits (682), Expect = 1e-69, Method: Composition-based stats. Identities = 87/222 (39%), Positives = 130/222 (58%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 QL P +SRDD LV + A L++ WP WPS VV+L GP G+GK+ L Sbjct: 3 ETPRQLPLELPHEAALSRDDYLVGGSNRAAFELLERWPDWPSPVVVLAGPVGAGKTHLVR 62 Query: 83 IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLM 142 + D++ + + S+ P + + L ++T LFH++N+ Q ++L+ Sbjct: 63 AFQDETGAVVLPAAELTPHSVQTLVAAPACVIEDAHLGIDNTALFHLLNAARQAGKTVLI 122 Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 T+RT+P SW + L DL SRL+AAT V+I PDDD L +V+VK+FADRQI +D+ + Y+V Sbjct: 123 TSRTWPASWKISLADLQSRLRAATPVEILEPDDDLLRRVLVKLFADRQIAVDQGVVDYLV 182 Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 RMERSL A + V+ +D AL+ + IT+ LA VL+ + Sbjct: 183 VRMERSLEVAMRAVEAIDQEALAGRVKITKPLAGRVLENVHK 224 >gi|319408623|emb|CBI82278.1| conserved hypothetical protein [Bartonella schoenbuchensis R1] Length = 231 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 85/227 (37%), Positives = 123/227 (54%), Gaps = 7/227 (3%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 E QL F RDDL+V + A +L+D WP+W + +LVG GSGK+ +++W Sbjct: 5 ETQLPLDFSYESVFRRDDLVVTDSNRMAFQLVDHWPNWVLPIAVLVGKEGSGKTHFSSVW 64 Query: 85 SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY-------D 137 K+ + + + +L+EDID N+T LFH+INSI Q Sbjct: 65 VQKANALIVHRDEIDQVITAASSGRSLLIEDIDTGKINETGLFHLINSIKQANLNVRQGQ 124 Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 ++LLMTART P +W + L DL SRL + +V+I PDD L + K+F+DRQI + + Sbjct: 125 ATLLMTARTLPSTWDLKLNDLKSRLNSVMLVEIDQPDDALLTAIAFKLFSDRQITVHSDI 184 Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 Y+V R ERSL ++D +D LAL R ITR++ EV+ Q Sbjct: 185 IHYLVSRCERSLFALRCVIDSVDKLALQRKRKITRAVICEVINTQMQ 231 >gi|319407203|emb|CBI80842.1| conserved hypothetical protein [Bartonella sp. 1-1C] Length = 229 Score = 266 bits (680), Expect = 3e-69, Method: Composition-based stats. Identities = 80/225 (35%), Positives = 125/225 (55%), Gaps = 5/225 (2%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 E QL F DDL++ + A +LI+ WP+W V IL+G GSGK+ +++W Sbjct: 5 ETQLPLDFSHKSVFQFDDLVMTDSNRMAFQLINHWPNWVPPVAILIGDKGSGKTHFSSVW 64 Query: 85 SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ-----YDSS 139 + K+ + + + + K L+ED+D + ++T LFH+INS+ Q ++ Sbjct: 65 AQKANALNVCHDEIDQVISMASSGKSFLIEDVDSGEISETGLFHLINSVKQANLGINQAT 124 Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199 LLMTART P +W + L DL SRL + +V I PDD L + K+F+DRQI + + Sbjct: 125 LLMTARTLPSTWNLQLNDLKSRLNSVMLVVIKQPDDALLTAIAFKLFSDRQITVHPSVIH 184 Query: 200 YIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 Y++ ERSL + ++D +D LAL R +TRS+ +EV+ Q Sbjct: 185 YLINHCERSLFSLKCVIDSVDRLALQRKSKVTRSIISEVINMQIQ 229 >gi|254459628|ref|ZP_05073044.1| chromosomal replication initiator, DnaA [Rhodobacterales bacterium HTCC2083] gi|206676217|gb|EDZ40704.1| chromosomal replication initiator, DnaA [Rhodobacteraceae bacterium HTCC2083] Length = 234 Score = 265 bits (678), Expect = 4e-69, Method: Composition-based stats. Identities = 73/220 (33%), Positives = 126/220 (57%), Gaps = 3/220 (1%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 QL F P + RDD + + AV LID+ SW + ++L+GP G+GK+ LA++W Sbjct: 2 STQLSFDLPSRAALGRDDFFISPSNALAVVLIDTPESWNNGKLLLIGPKGAGKTHLAHVW 61 Query: 85 SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLL 141 + +S + + + + + + P+++ED+D + + +T LFH+ N +LL Sbjct: 62 AAQSGARIIAANTLTEEDVPNLVQTPLVIEDVDHIAGDRTFETALFHLHNLAQAEGRALL 121 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 +TA++ P WG+CLPDL SRL+A + PDD L +++K+FADRQ+ + ++ Sbjct: 122 LTAKSQPHLWGLCLPDLASRLQAVQSATLEAPDDTLLTALLMKLFADRQLNPAPDVIPFL 181 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 R++RS A+++V+ +D AL G ITR+ A+ L + Sbjct: 182 ALRIDRSFAAAQQIVEALDKAALDAGRAITRAFASAALDK 221 >gi|240850719|ref|YP_002972119.1| hypothetical protein Bgr_11870 [Bartonella grahamii as4aup] gi|240267842|gb|ACS51430.1| hypothetical protein Bgr_11870 [Bartonella grahamii as4aup] Length = 229 Score = 265 bits (678), Expect = 4e-69, Method: Composition-based stats. Identities = 88/224 (39%), Positives = 128/224 (57%), Gaps = 5/224 (2%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 +E QL +FP +DL+V + A +LID WP+W + +LVG GSGK+ +N Sbjct: 3 GRETQLSLNFPYDPIFQFEDLVVTESNRMAFQLIDHWPNWSLPIAVLVGKEGSGKTHFSN 62 Query: 83 IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY-----D 137 IW K+ + R + + + L+EDI + N+T+LFH+INSI Q Sbjct: 63 IWLQKADAFRIQHNEIDQAVTMASLGRSFLIEDIGAGEINETELFHLINSIKQANLDARQ 122 Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 ++LLMTART P +W + L DL SRL + V+I+ PDD L V K+F+DRQ+ + Sbjct: 123 ATLLMTARTLPSAWNLKLNDLKSRLNSVMFVEINQPDDALLTAVAFKLFSDRQLIVHPDT 182 Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 Y+V R ERSL ++++D +D LAL R ITR++ AEVL Sbjct: 183 VYYLVSRCERSLFSLKRVIDSVDQLALQRKRKITRAIIAEVLNR 226 >gi|259416785|ref|ZP_05740705.1| chromosomal replication initiator, DnaA [Silicibacter sp. TrichCH4B] gi|259348224|gb|EEW60001.1| chromosomal replication initiator, DnaA [Silicibacter sp. TrichCH4B] Length = 225 Score = 265 bits (678), Expect = 4e-69, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 120/223 (53%), Gaps = 3/223 (1%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 EQL F P + RDD V + AV LID +WPS ++L GP GSGK+ LA++W Sbjct: 2 SEQLSFDLPAKPALGRDDFFVAPSNAMAVALIDPAFAWPSGKLVLTGPKGSGKTHLAHVW 61 Query: 85 SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLL 141 + +S + A + + PV +ED+ + + LFH+ N + + L+ Sbjct: 62 AKESGARVVPARALTEADVPDLASGPVAIEDVPAIAEDARAQKALFHLHNMVLTHGHRLM 121 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 +T R P WG+ L DL SR++AAT + PDD L V+ K+F DRQI + Y+ Sbjct: 122 LTGRPAPNLWGLGLADLQSRVQAATHAALEAPDDALLAVVLAKLFNDRQITPKPDVIPYL 181 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 V RM+RS A +VD++D LAL+ ++R+LA ++ Q+ Sbjct: 182 VGRMDRSFAAAAAVVDQLDRLALAEQRTLSRALAIRMMSSDQE 224 >gi|319404186|emb|CBI77779.1| conserved hypothetical protein [Bartonella rochalimae ATCC BAA-1498] Length = 229 Score = 265 bits (677), Expect = 5e-69, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 126/225 (56%), Gaps = 5/225 (2%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 E QL F DDL++ + A +LI+ WP+W + +L+G GSGK+ +++W Sbjct: 5 ETQLPLDFSHKSVFQFDDLVMTDSNRMAFQLINHWPNWVPPIAVLIGDKGSGKTHFSSVW 64 Query: 85 SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ-----YDSS 139 + K+ + + + + K L+ED+D + ++T LFH+INSI Q ++ Sbjct: 65 AQKANALNVCHDEIDQVIAMASSGKSFLIEDVDSGEISETGLFHLINSIKQANLGINQAT 124 Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199 LLMTART P +W + L DL SRL + +V + PDD L + K+F+DRQI + + Sbjct: 125 LLMTARTLPSTWNLQLDDLKSRLNSVMLVVLKQPDDALLTAIAFKLFSDRQITVHPSVIH 184 Query: 200 YIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 Y++ ERSL ++++D +D LAL R +TRS+ +EV+ Q Sbjct: 185 YLINHCERSLFSLKRVIDSVDRLALQRKSKVTRSIISEVINMQIQ 229 >gi|99081697|ref|YP_613851.1| chromosomal replication initiator, DnaA [Ruegeria sp. TM1040] gi|99037977|gb|ABF64589.1| Chromosomal replication initiator DnaA [Ruegeria sp. TM1040] Length = 225 Score = 264 bits (676), Expect = 6e-69, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 120/223 (53%), Gaps = 3/223 (1%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 EQL F P + RDD V + AV LID +WPS ++L GP GSGK+ LA++W Sbjct: 2 SEQLSFDLPAKPALGRDDFFVAPSNAMAVALIDPAFAWPSGKLVLTGPKGSGKTHLAHVW 61 Query: 85 SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLL 141 + +S + A + + PV +ED+ + + LFH+ N + + L+ Sbjct: 62 AKESGARVVPAHALTEADVPELASGPVAIEDVPDIAEDALAQKALFHLHNMVLTHGHRLM 121 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 +T R P WG+ L DL SR++AAT + PDD L V+ K+F DRQI + Y+ Sbjct: 122 LTGRPAPNLWGLGLADLQSRVQAATHAALEAPDDALLAVVLAKLFNDRQITPKPDVIPYL 181 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 V RM+RS A +V+++D LAL+ ++R+LA ++ Q+ Sbjct: 182 VGRMDRSFAAAAAVVEQLDRLALAEQRTLSRALAIRLMSSDQK 224 >gi|115525284|ref|YP_782195.1| hypothetical protein RPE_3282 [Rhodopseudomonas palustris BisA53] gi|115519231|gb|ABJ07215.1| regulatory inactivation of DnaA Hda protein [Rhodopseudomonas palustris BisA53] Length = 224 Score = 264 bits (676), Expect = 7e-69, Method: Composition-based stats. Identities = 82/222 (36%), Positives = 135/222 (60%), Gaps = 1/222 (0%) Query: 22 KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 + + QL + P +SRDD L A A+ L+D WP WP+RV++L GP GSGKS LA Sbjct: 3 QGQPRQLALALPHAESLSRDDFLEGPANRVALSLVDHWPDWPNRVMLLSGPEGSGKSHLA 62 Query: 82 NIWSDKSRSTRFSNIAKSLDSILID-TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140 IW++++ + S A + ++ T +++ED+ F++ LFH++N + + + Sbjct: 63 AIWAEQAGARSISAQALTSAAVPAALTTGALVVEDLTPGGFDERALFHLMNLAREDQAYV 122 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L+TAR PV++ + L DL SRL+A V+++ PDD +IVK ADRQ+ +D+ L ++ Sbjct: 123 LITARIPPVAFEIDLRDLRSRLRAVPVLELLPPDDQLFRALIVKFCADRQMSVDEALVSF 182 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + R++RS A + V+K+D AL G +TR+LAAE+ ++ Sbjct: 183 LANRIDRSFAAARRAVEKLDTEALRLGRPVTRALAAELFRDA 224 >gi|254505101|ref|ZP_05117252.1| hypothetical protein SADFL11_5141 [Labrenzia alexandrii DFL-11] gi|222441172|gb|EEE47851.1| hypothetical protein SADFL11_5141 [Labrenzia alexandrii DFL-11] Length = 226 Score = 264 bits (675), Expect = 8e-69, Method: Composition-based stats. Identities = 86/224 (38%), Positives = 128/224 (57%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 QL P + R+D LV + + A L++ WP WPS V+IL GP GSGK+ L Sbjct: 3 ETPRQLPLDLPHDAALGREDYLVGKSNQAAFELLERWPDWPSPVIILAGPVGSGKTHLVE 62 Query: 83 IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLM 142 + D++ + + + P + + N+T LFH++N+ Q ++L+ Sbjct: 63 AFRDETGAEVIQARDLTEAGVSALVAAPACVVEDAHRGVNNTALFHLLNAARQAGKTVLI 122 Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 T+RT+P SW + LPDL SRL+AAT V++ PDDD L +V+VK+FADRQI +D + Y+V Sbjct: 123 TSRTWPASWKISLPDLLSRLRAATPVEVLEPDDDLLRRVLVKLFADRQIGVDIGVVDYLV 182 Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 RMERSL A + VD +D AL+ + I++ LA VL+ D Sbjct: 183 VRMERSLEVALRAVDAIDREALAGRVKISKPLAGRVLETVTGTD 226 >gi|316933720|ref|YP_004108702.1| hypothetical protein Rpdx1_2378 [Rhodopseudomonas palustris DX-1] gi|315601434|gb|ADU43969.1| hypothetical protein Rpdx1_2378 [Rhodopseudomonas palustris DX-1] Length = 225 Score = 264 bits (675), Expect = 9e-69, Method: Composition-based stats. Identities = 86/221 (38%), Positives = 134/221 (60%), Gaps = 1/221 (0%) Query: 22 KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 + + QL P +SR+D L SA A+ LI+SWP WP+R+++LVGP GSGKS LA Sbjct: 4 RVEPRQLALDLPHAESLSREDFLEGSANTAALSLIESWPDWPNRIMMLVGPEGSGKSHLA 63 Query: 82 NIWSDKSRSTRFSNIAKSLDSILID-TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140 IW++ + + + A + ++ V++ED+ F++ LFH+IN + ++ + Sbjct: 64 AIWAELAGARSTAAQALNAAAVPGALATGAVVVEDLAPGSFDERALFHLINMAREDEAYV 123 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L T R P ++ V L DL SRL+A VV + PDD +IVK ADRQ+ ID L Y Sbjct: 124 LFTGRLAPSAFPVELRDLKSRLRAVPVVSLLPPDDALFRALIVKFCADRQMCIDAGLVGY 183 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + R++RS V A ++V+K+D +AL G +TR+LA+E+L++ Sbjct: 184 LANRIDRSFVAARRVVEKLDTMALRLGRPVTRALASEILRD 224 >gi|86749611|ref|YP_486107.1| hypothetical protein RPB_2491 [Rhodopseudomonas palustris HaA2] gi|86572639|gb|ABD07196.1| regulatory inactivation of DnaA Hda protein [Rhodopseudomonas palustris HaA2] Length = 225 Score = 263 bits (674), Expect = 1e-68, Method: Composition-based stats. Identities = 85/221 (38%), Positives = 135/221 (61%), Gaps = 1/221 (0%) Query: 22 KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 + + QL P +SR+D L +A A+RLI+SWP WP+R+++LVGP GSGKS LA Sbjct: 4 RVQPRQLALDLPHAESLSREDFLEGTANSSALRLIESWPDWPNRIMLLVGPEGSGKSHLA 63 Query: 82 NIWSDKSRSTRFSNIAKSLDSILID-TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140 +IW++++ + S A + ++ + +++ED+ F++ LFH+IN + ++ + Sbjct: 64 SIWAEQAGARSTSAQALTAANVPGELATGALVVEDLTPGSFDERALFHLINLAREDEAYV 123 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L+TAR P ++ L DL SRL+A VV + PDD +IVK ADRQ+ ID L Y Sbjct: 124 LITARLAPAAFPADLRDLRSRLRAVPVVTLLPPDDALFRALIVKFCADRQMSIDANLVGY 183 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + R++RS A + V+++D AL G +TR+LAA+VL+ Sbjct: 184 LANRIDRSFAAARQTVERLDTEALRLGRPVTRALAADVLRN 224 >gi|319405633|emb|CBI79256.1| conserved hypothetical protein [Bartonella sp. AR 15-3] Length = 229 Score = 263 bits (674), Expect = 1e-68, Method: Composition-based stats. Identities = 76/225 (33%), Positives = 124/225 (55%), Gaps = 5/225 (2%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 E QL DDL++ + A +LI+ WP+W + +L+G GSGK+ +++W Sbjct: 5 ETQLPLDLSHKSVFQFDDLIMTDSNRMAFQLINHWPNWIPPIAVLIGDKGSGKTHFSSVW 64 Query: 85 SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ-----YDSS 139 + K+ + + + + K L+EDID + ++ LFH+INS+ Q ++ Sbjct: 65 AQKANALNICHEEIDQVIAIASSGKSFLIEDIDSAEISEIGLFHLINSVKQANLHMNQAT 124 Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199 LLMTART P +W + L DL SRL + +V + PDD L + K+F+DRQI + + Sbjct: 125 LLMTARTLPSTWNLQLNDLKSRLNSVMLVVLKQPDDALLTAIAFKLFSDRQITVHPSVIH 184 Query: 200 YIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 Y++ R ERSL + ++D +D LAL R +TR++ +EV+ Q Sbjct: 185 YLINRCERSLFSLKSIIDSVDQLALQRKSKVTRAIISEVINMQIQ 229 >gi|163737419|ref|ZP_02144836.1| Chromosomal replication initiator, DnaA [Phaeobacter gallaeciensis BS107] gi|161388945|gb|EDQ13297.1| Chromosomal replication initiator, DnaA [Phaeobacter gallaeciensis BS107] Length = 256 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 68/220 (30%), Positives = 116/220 (52%), Gaps = 3/220 (1%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 +QL F P + RDD V + AV ++D +WP ++L GP SGK+ L ++W Sbjct: 2 AQQLSFDLPAKPALGRDDFFVAPSNAMAVAMLDPSFAWPGGKLVLSGPKRSGKTHLVHVW 61 Query: 85 SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLL 141 + S + + + + P+ +ED+ + + LFH+ N + +L+ Sbjct: 62 ASNSGAQIIPAWQLTKEDVPHLADGPIAVEDVPDIADSAPAQDALFHLHNLVLANGHALM 121 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 +T R P WG+ LPDL SR++ A ++ PDD L V+ K+F DRQI + Y+ Sbjct: 122 LTGRAAPHLWGMSLPDLQSRIEGAPHAQLQPPDDALLSVVLAKLFNDRQITPKPDVIPYL 181 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 V M+RS A ++V+++D L+L+ G ++R LA E++ + Sbjct: 182 VAHMDRSFAAASQIVEELDRLSLTEGRMVSRVLAVELMSD 221 >gi|86138527|ref|ZP_01057100.1| hypothetical protein MED193_21806 [Roseobacter sp. MED193] gi|85824587|gb|EAQ44789.1| hypothetical protein MED193_21806 [Roseobacter sp. MED193] Length = 225 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 75/220 (34%), Positives = 119/220 (54%), Gaps = 3/220 (1%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 +QL F P + RDD V + AV L+D WPS ++L GP+GSGK+ LA++W Sbjct: 2 AQQLSFDLPAKTALGRDDFFVAPSNAMAVALLDPSFHWPSGKLVLTGPTGSGKTHLAHVW 61 Query: 85 SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLL 141 + ++ + D + + PV++ED+ + N LFH+ N + +L+ Sbjct: 62 ASQTGAKILQACDLKEDRVPELAQAPVVVEDVPAIAGNPEAQNALFHLHNLVLSNGHALM 121 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 +T R P W + L DL SR++AAT ++ PDD L V+ K+F DRQ+ + Y+ Sbjct: 122 LTGRAAPNLWQLSLADLQSRMQAATHAELQAPDDALLAVVLAKLFNDRQVTPKADVIPYL 181 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 V M+RS A +V ++DNLALS G ++R LA ++ + Sbjct: 182 VAHMDRSFAAAAVIVKQLDNLALSEGRTLSRPLAVRLMSQ 221 >gi|319898870|ref|YP_004158963.1| hypothetical protein BARCL_0704 [Bartonella clarridgeiae 73] gi|319402834|emb|CBI76385.1| conserved protein of unknown function [Bartonella clarridgeiae 73] Length = 229 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 125/223 (56%), Gaps = 5/223 (2%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 +E QL F DDL+V + A +LI+ WP+W + IL+G GSGK+ ++ Sbjct: 3 KREMQLPLDFSYKSIFQFDDLVVTDSNRMAFQLINHWPNWVPPIAILIGDKGSGKTHFSS 62 Query: 83 IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYD----- 137 +W+ K+ + + + KP L+E+ID + ++ LFH+IN I Q + Sbjct: 63 VWAQKANALNIFYDEIDQFIVEASSGKPFLIENIDSGEIDEIGLFHLINIIKQANLHVNH 122 Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 ++LLMTART P +W + L DL SRL + +V + PDD+ L + K+F+DRQI + + Sbjct: 123 ATLLMTARTLPSAWNLKLNDLKSRLNSVMLVALEQPDDELLTAIAFKLFSDRQITVHSDI 182 Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 Y++ R ERSL + ++D +D LAL R +TR++ EV+ Sbjct: 183 IYYLINRCERSLFSLKCIIDSVDRLALQRKSKVTRAIITEVIN 225 >gi|91977422|ref|YP_570081.1| hypothetical protein RPD_2953 [Rhodopseudomonas palustris BisB5] gi|91683878|gb|ABE40180.1| regulatory inactivation of DnaA Hda protein [Rhodopseudomonas palustris BisB5] Length = 225 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 84/221 (38%), Positives = 136/221 (61%), Gaps = 1/221 (0%) Query: 22 KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 + + QL P +SR+D L +A A++LI+SWP WP+R+++LVGP GSGKS LA Sbjct: 4 RVQPRQLALDLPHAESLSREDFLEGTANTAALKLIESWPDWPNRIMLLVGPEGSGKSHLA 63 Query: 82 NIWSDKSRSTRFSNIAKSLDSILID-TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140 +IW++++ + S A + ++ + +++ED+ F++ LFH++N + ++ + Sbjct: 64 SIWAEQAGARSTSAQALTPANVPGELATGALVVEDLTPGSFDERALFHLMNLAREDEAYV 123 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L+TAR P ++ L DL SRL+A VV + PDD +IVK ADRQ+ ID L Y Sbjct: 124 LITARLAPSAFPAELRDLRSRLRAVPVVSLLAPDDALFRALIVKFCADRQMSIDANLVGY 183 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + R++RS A + V+++D AL G +TR+LAAE+L+E Sbjct: 184 LANRIDRSFAAARQAVERLDTEALRLGRPVTRALAAELLRE 224 >gi|149202229|ref|ZP_01879202.1| Chromosomal replication initiator, DnaA [Roseovarius sp. TM1035] gi|149144327|gb|EDM32358.1| Chromosomal replication initiator, DnaA [Roseovarius sp. TM1035] Length = 225 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 121/223 (54%), Gaps = 3/223 (1%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 QL F P + R+ V A +AV +I+ W WP R +IL GPSG+GK+ LA++W Sbjct: 3 PRQLSFDLPVRAALGREVFFVSPANAEAVAMIEGWQGWPGRKLILAGPSGAGKTHLAHVW 62 Query: 85 SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLL 141 + S + + + I +P+++ED D + + + LFH+ N + SLL Sbjct: 63 AALSGAQMIAAKHIAQADIPNFASRPIVVEDADQIARDRPSEEALFHLHNLVLAEGHSLL 122 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 +TAR P W + LPDL SR++ + ++ PDD L V+ K+FADRQI Y+ Sbjct: 123 LTARQPPNLWPLVLPDLQSRMQGTMLTQLRAPDDTLLAAVLTKLFADRQIAPSPDTIPYL 182 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 +RM+RS A ++V +D AL+ G ITR LA++VL + Sbjct: 183 ARRMDRSFDAAREVVAALDAAALAEGRAITRVLASQVLDKLAH 225 >gi|260430971|ref|ZP_05784942.1| chromosomal replication initiator, DnaA [Silicibacter lacuscaerulensis ITI-1157] gi|260414799|gb|EEX08058.1| chromosomal replication initiator, DnaA [Silicibacter lacuscaerulensis ITI-1157] Length = 229 Score = 262 bits (671), Expect = 3e-68, Method: Composition-based stats. Identities = 73/220 (33%), Positives = 117/220 (53%), Gaps = 4/220 (1%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 QL F P + R+D V + AV +I + SWP ++L GP+GSGK+ LA++W Sbjct: 2 ARQLSFDLPAKTALGREDFFVSPSNALAVAMISA-NSWPGNKLVLSGPAGSGKTHLAHVW 60 Query: 85 SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLL 141 + ++ D + + R P+ +ED+ ++ + Q LFH+ N + +LL Sbjct: 61 AAETGGQIIQATNLRHDDVPLLARAPIAVEDVPMIAGDIEQQKVLFHLHNLVLAEGHALL 120 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 +T R P W + L DL SR++ A V + PDD L V+ K+F DRQ+ + AY+ Sbjct: 121 LTGRLAPKYWELPLADLQSRVEGAHHVALDPPDDALLCAVLAKLFVDRQLNPGPDVIAYL 180 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 V+ M+R A +V ++D++AL ITR+LA VL + Sbjct: 181 VKHMDRRFETAADVVAQLDHVALMEKREITRTLAIRVLNK 220 >gi|254476295|ref|ZP_05089681.1| chromosomal replication initiator, DnaA [Ruegeria sp. R11] gi|214030538|gb|EEB71373.1| chromosomal replication initiator, DnaA [Ruegeria sp. R11] Length = 271 Score = 262 bits (671), Expect = 3e-68, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 118/223 (52%), Gaps = 3/223 (1%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 +QL F P + RDD V + AV ++D +WP ++L GP SGK+ L ++W Sbjct: 2 AQQLSFDLPAKPALGRDDFFVAPSNAMAVAMLDPSFAWPGGKLVLSGPKRSGKTHLVHVW 61 Query: 85 SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLL 141 + S + + ++ P+ +ED+ + N LFH+ N + +L+ Sbjct: 62 ASNSGAQILPAWQLTKAAVPQLAEGPIAIEDVPDIADNTEAQDALFHLHNLVLANGHALM 121 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 +T R P WG+ LPDL SR++ A ++ PDD L V+ K+F DRQI + Y+ Sbjct: 122 LTGRAAPRLWGMSLPDLQSRIEGAPHAQLQPPDDALLSVVLAKLFNDRQITPKPDVIPYL 181 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 V M+RS A ++V+++D L+L+ G ++R+LA +++ + Q Sbjct: 182 VAHMDRSFAAASQIVEELDQLSLAEGRMVSRALAVQLMSDRPQ 224 >gi|39936112|ref|NP_948388.1| hypothetical protein RPA3049 [Rhodopseudomonas palustris CGA009] gi|39649966|emb|CAE28490.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009] Length = 229 Score = 262 bits (670), Expect = 3e-68, Method: Composition-based stats. Identities = 84/226 (37%), Positives = 132/226 (58%), Gaps = 1/226 (0%) Query: 16 QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGS 75 ++ + + QL P +SR+D L SA A+ LI+SWP WP+R+++LVGP GS Sbjct: 2 ERPVPVRVEPRQLALDLPHAESLSREDFLEGSANTAALSLIESWPDWPNRIMMLVGPEGS 61 Query: 76 GKSCLANIWSDKSRSTRFSNIAKSLDSILID-TRKPVLLEDIDLLDFNDTQLFHIINSIH 134 GKS LA IW++ + + + A + ++ V++ED+ F++ LFH++N Sbjct: 62 GKSHLAAIWAELAGARSTAAQALNAAAVPGALATGAVVVEDLVPGSFDERALFHLMNMAR 121 Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194 + ++ +L T R P + + L DL SRL+ VV + PDD +IVK ADRQ+ ID Sbjct: 122 EDEAYVLFTGRVEPSALSIELRDLKSRLRTVPVVSLLPPDDALFRALIVKFCADRQMCID 181 Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 L Y+ R++RS V A ++V+K+D AL G +TR+LA+EVL+ Sbjct: 182 AALVGYLANRIDRSFVAARQVVEKLDTTALRLGRPVTRALASEVLR 227 >gi|163740900|ref|ZP_02148293.1| hypothetical protein RG210_13706 [Phaeobacter gallaeciensis 2.10] gi|161385891|gb|EDQ10267.1| hypothetical protein RG210_13706 [Phaeobacter gallaeciensis 2.10] Length = 256 Score = 262 bits (669), Expect = 4e-68, Method: Composition-based stats. Identities = 68/220 (30%), Positives = 116/220 (52%), Gaps = 3/220 (1%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 +QL F P + RDD V + AV ++D +WP ++L GP SGK+ L ++W Sbjct: 2 AQQLSFDLPAKPALGRDDFFVAPSNAMAVAMLDPSFAWPGGKLVLSGPKRSGKTHLVHVW 61 Query: 85 SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLL 141 + S + + + + P+ +ED+ + + LFH+ N + +L+ Sbjct: 62 ASNSGAQIIPAWQLTKEDVPHLADGPIAVEDVPDIADSAPAQDALFHLHNLVLANGHALM 121 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 +T R P WG+ LPDL SR++ A ++ PDD L V+ K+F DRQI + Y+ Sbjct: 122 LTGRAAPHLWGMSLPDLQSRIEGAPHAQLQPPDDALLSVVLAKLFNDRQITPKPDVIPYL 181 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 V M+RS A ++V+++D L+L+ G ++R LA E++ + Sbjct: 182 VAHMDRSFAAASQIVEELDRLSLTEGRMVSRVLAVELMSD 221 >gi|254473332|ref|ZP_05086729.1| ATP/GTP-binding protein [Pseudovibrio sp. JE062] gi|211957448|gb|EEA92651.1| ATP/GTP-binding protein [Pseudovibrio sp. JE062] Length = 226 Score = 261 bits (668), Expect = 5e-68, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 125/223 (56%), Gaps = 2/223 (0%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 +QL P + DD LV ++ + A L+ +WP WPS +V L GP GSGK+ L N Sbjct: 5 TGPQQLPLVLPHEEALGVDDYLVSTSNQAAFNLVTNWPEWPSPIVTLQGPIGSGKTHLVN 64 Query: 83 IWSDKSRSTRFSNIA-KSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLL 141 W + S + + LD + PV +ED+ F++ LFH+ N++ ++L Sbjct: 65 AWQELSGAQIVGGDELEYLDLTALAEAGPVAVEDLHA-GFDEASLFHLFNAVRLTGGNML 123 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 MT R +P ++ + DL SR +AAT V++ PDD L V+ K F+DRQ+ +D + Y+ Sbjct: 124 MTTREWPHTFDLKTKDLASRFRAATPVQVEEPDDMLLAMVMTKHFSDRQVTVDSSVIDYL 183 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 V R+ERSL A +VD +D AL+ G I+R +A+++L+ + Sbjct: 184 VIRIERSLDAARNVVDMLDRHALATGRKISRVMASKILESMGE 226 >gi|192291830|ref|YP_001992435.1| hypothetical protein Rpal_3459 [Rhodopseudomonas palustris TIE-1] gi|192285579|gb|ACF01960.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1] Length = 225 Score = 261 bits (667), Expect = 7e-68, Method: Composition-based stats. Identities = 85/220 (38%), Positives = 130/220 (59%), Gaps = 1/220 (0%) Query: 22 KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 + + QL P +SR+D L SA A+ LI+SWP WP+R+++LVGP GSGKS LA Sbjct: 4 RVEPRQLALDLPHAESLSREDFLEGSANTAALSLIESWPDWPNRIMMLVGPEGSGKSHLA 63 Query: 82 NIWSDKSRSTRFSNIAKSLDSILID-TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140 IW++ + + + A + S+ V++ED+ F++ LFH++N + ++ + Sbjct: 64 AIWAELAGARSTAAQALNAASVPGALATGAVVVEDLVPGSFDERALFHLMNMAREDEAYV 123 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L T R P + + L DL SRL+ VV + PDD +IVK ADRQ+ ID L Y Sbjct: 124 LFTGRVEPSALSIDLRDLKSRLRTVPVVSLLPPDDALFRALIVKFCADRQMCIDAALVGY 183 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + R++RS V A ++V+K+D AL G +TR+LA+EVL+ Sbjct: 184 LANRIDRSFVAARQVVEKLDTTALRLGRPVTRALASEVLR 223 >gi|83954040|ref|ZP_00962760.1| hypothetical protein NAS141_17079 [Sulfitobacter sp. NAS-14.1] gi|83841077|gb|EAP80247.1| hypothetical protein NAS141_17079 [Sulfitobacter sp. NAS-14.1] Length = 227 Score = 261 bits (667), Expect = 7e-68, Method: Composition-based stats. Identities = 74/220 (33%), Positives = 119/220 (54%), Gaps = 3/220 (1%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 +QL P + RDD V + AV +I+ W +W R ++L GP GSGK+ LA++W Sbjct: 2 AQQLGLDLPSRPALGRDDFFVAPSNAIAVAMIEGWQAWAGRKMVLTGPPGSGKTHLAHVW 61 Query: 85 SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLL 141 ++ S + + I + P+ +E++ + + +T LFH+ N + SLL Sbjct: 62 ANLSGAGIIDARDIATGDIPALAQGPLAVENVPDIAGDNAAETHLFHLHNLVLAEGHSLL 121 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 +T WG+ LPDL SR++AAT + PDD L V+ K+ ADRQ+ + Y+ Sbjct: 122 LTGTPAVPQWGLHLPDLTSRMRAATAAALEAPDDSLLTAVMAKLLADRQLTPKPDVIPYL 181 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + RM+RS A +LV +D +L++ +TR+LAA+VL Sbjct: 182 LLRMDRSFAAAGELVAALDAASLAQQKPVTRALAAQVLDN 221 >gi|121602210|ref|YP_989063.1| hypothetical protein BARBAKC583_0767 [Bartonella bacilliformis KC583] gi|120614387|gb|ABM44988.1| conserved hypothetical protein [Bartonella bacilliformis KC583] Length = 229 Score = 261 bits (667), Expect = 7e-68, Method: Composition-based stats. Identities = 85/227 (37%), Positives = 128/227 (56%), Gaps = 5/227 (2%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 +E QL P D+L+V + A +LID+WP+W + ILVG GSGK+ ++ Sbjct: 3 EREVQLPLDLPYESVFCFDNLVVTDSNRMAFQLIDNWPNWILPIAILVGKEGSGKTHFSS 62 Query: 83 IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY-----D 137 +W+ K+ + L+ + K +L+E+ID ++T LFH+INSI Q Sbjct: 63 VWAQKANALTVDREDIDRVISLVSSGKSLLIENIDAGQISETGLFHLINSIQQANLDARQ 122 Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 ++LL+TART P +W + L DL SRL + +V I+ PDD L V K+F+DRQI + + Sbjct: 123 TNLLITARTVPSTWNLKLNDLKSRLNSVMLVAINQPDDALLTAVAFKLFSDRQIAVHSDI 182 Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 Y+V R ERSL +++VD +D LAL R ITR++ E + Q Sbjct: 183 IHYLVTRCERSLFALQRVVDSVDRLALQRKSKITRTVIGEAINMQMQ 229 >gi|163733468|ref|ZP_02140911.1| hypothetical protein RLO149_17493 [Roseobacter litoralis Och 149] gi|161393256|gb|EDQ17582.1| hypothetical protein RLO149_17493 [Roseobacter litoralis Och 149] Length = 227 Score = 261 bits (667), Expect = 8e-68, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 120/223 (53%), Gaps = 3/223 (1%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 EQL F P + R D LV + AV LI+ W WP R ++L GP+GSGK+ LA++W Sbjct: 2 PEQLGFDLPGITALGRADFLVAPSNAVAVALIEGWQDWPGRKLVLSGPAGSGKTHLAHVW 61 Query: 85 SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLL 141 + S + + I R+ V +ED+ + N +T LFH+ N ++LL Sbjct: 62 AALSGAEICEAQTLAAQDIPELARRSVAIEDVPAIAGNTEAETALFHLHNLALAEGNALL 121 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 T P +W + LPDL SR++ + LPDD L V+ K+FADRQ+ L AY+ Sbjct: 122 FTGEAAPGAWHLELPDLKSRIEGTQAASLHLPDDALLSAVLAKLFADRQLMPKPDLIAYL 181 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 + R++RS A ++V +D +L++ ++R LAA VL + Q Sbjct: 182 ILRIDRSFAAARRIVAALDAASLAQKRPLSRQLAAAVLDKEDQ 224 >gi|299133727|ref|ZP_07026921.1| chromosomal replication initiator, DnaA [Afipia sp. 1NLS2] gi|298591563|gb|EFI51764.1| chromosomal replication initiator, DnaA [Afipia sp. 1NLS2] Length = 229 Score = 261 bits (667), Expect = 8e-68, Method: Composition-based stats. Identities = 76/222 (34%), Positives = 122/222 (54%), Gaps = 1/222 (0%) Query: 22 KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 + QL P +SRDD L + QA+ L++ WP W +RV++LVGP G GKS LA Sbjct: 3 RTPPRQLALELPHAESLSRDDYLEGPSNVQALGLVERWPDWSNRVMMLVGPEGCGKSHLA 62 Query: 82 NIWSDKSRSTRFSNIAKSLDSILID-TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140 IW+ S + A + + +++E ++ F++ +FH++N + ++ + Sbjct: 63 AIWAAISGARIVGAHALTSADVPASLATGALVVEHLEPGHFDERAIFHLLNLARETNAFV 122 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 LMTAR P S+ + L D SRL+A VV + PDD L ++VK ADRQ+ +D+ + Y Sbjct: 123 LMTARMAPASFEIELRDAGSRLRAIPVVTVEPPDDQLLRALLVKFCADRQMAVDEGVVGY 182 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + +ERS A + V+ +D AL + ITR+LAA + + Sbjct: 183 LATHIERSFAAARQAVELLDAEALRQRRPITRALAATLFRGQ 224 >gi|83942870|ref|ZP_00955330.1| hypothetical protein EE36_11853 [Sulfitobacter sp. EE-36] gi|83845878|gb|EAP83755.1| hypothetical protein EE36_11853 [Sulfitobacter sp. EE-36] Length = 227 Score = 260 bits (666), Expect = 9e-68, Method: Composition-based stats. Identities = 74/220 (33%), Positives = 118/220 (53%), Gaps = 3/220 (1%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 +QL P + RDD V + AV +I+ W +W R ++L GP GSGK+ LA++W Sbjct: 2 AQQLGLDLPSRPALGRDDFFVAPSNAIAVAMIEGWQAWAGRKMVLTGPPGSGKTHLAHVW 61 Query: 85 SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLL 141 ++ S + + I + P+ +E++ + + +T LFH+ N + SLL Sbjct: 62 ANLSGAGIIDARDIATGDIPALAQGPLAVENVPDIAGDNAAETHLFHLHNLVLAEGHSLL 121 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 +T WG+ LPDL SR++AAT + PDD L V+ K+ ADRQ+ + Y+ Sbjct: 122 LTGTPAVPQWGLHLPDLTSRMRAATAAALEAPDDSLLTAVMAKLLADRQLTPKPDVIPYL 181 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + RM+RS A LV +D +L++ +TR+LAA+VL Sbjct: 182 LLRMDRSFAAAGDLVAALDAASLAQQKPVTRALAAQVLDN 221 >gi|90423831|ref|YP_532201.1| hypothetical protein RPC_2328 [Rhodopseudomonas palustris BisB18] gi|90105845|gb|ABD87882.1| regulatory inactivation of DnaA Hda protein [Rhodopseudomonas palustris BisB18] Length = 225 Score = 260 bits (666), Expect = 9e-68, Method: Composition-based stats. Identities = 76/222 (34%), Positives = 133/222 (59%), Gaps = 1/222 (0%) Query: 22 KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 + + QL + P +SRDD L + +A++LID WP WP+RV++L GP GSGKS L+ Sbjct: 4 RVQPRQLALALPHAESLSRDDFLEGPSNSEALKLIDHWPDWPNRVMLLTGPEGSGKSHLS 63 Query: 82 NIWSDKSRSTRFSNIAKSLDSILID-TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140 +IW++++ + + A + ++ +++ED+ ++ LFH++N + + + Sbjct: 64 SIWAEQAGARAITAHALTSSAVPGALATGALVVEDLCPPCIDERALFHLLNLAREDQAYV 123 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L+T+R P + V L DL SRL+A V + PDD +IVK ADRQ+ +D+ L ++ Sbjct: 124 LITSRLPPSALEVDLRDLRSRLRAVPAVTLLPPDDQLFRALIVKFCADRQMSVDESLVSF 183 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + R++RS + A + V+++D AL G +TR+LAAE+ ++ Sbjct: 184 VANRIDRSFIAARQAVERLDTEALRLGRPVTRALAAELFRDL 225 >gi|75675787|ref|YP_318208.1| hypothetical protein Nwi_1595 [Nitrobacter winogradskyi Nb-255] gi|74420657|gb|ABA04856.1| regulatory inactivation of DnaA Hda protein [Nitrobacter winogradskyi Nb-255] Length = 226 Score = 260 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 84/223 (37%), Positives = 132/223 (59%), Gaps = 1/223 (0%) Query: 20 QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSC 79 + QL F+ P SRDD L A A+ LI+SWP WP+R+++L GP G GKS Sbjct: 2 AGRPPSRQLAFTLPHAESFSRDDFLEGPANAAALSLIESWPEWPNRIMLLAGPEGCGKSH 61 Query: 80 LANIWSDKSRSTRFSNIAKSLDSILID-TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDS 138 LA IW++++ + S + ++ + T +++ED++ F++ LFH++N + + Sbjct: 62 LAAIWAERAGARSISAQGLTAATVPMALTTGALVVEDLNPKTFDELALFHLMNLAREEAA 121 Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198 +LMTAR P + + L DL SRL+A VV + PDD L +IVK ADRQ+ ID+ + Sbjct: 122 FVLMTARVTPAAIEIGLRDLRSRLRAVPVVTLMPPDDHLLRALIVKFSADRQMNIDEAIV 181 Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++I R ERS+ A V+++D +L G +TR+LAAE+L+ Sbjct: 182 SFIATRTERSVAAARLAVEQLDAESLRLGRPVTRALAAELLRN 224 >gi|114764028|ref|ZP_01443269.1| hypothetical protein 1100011001340_R2601_19280 [Pelagibaca bermudensis HTCC2601] gi|114543620|gb|EAU46634.1| hypothetical protein R2601_19280 [Roseovarius sp. HTCC2601] Length = 233 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 77/222 (34%), Positives = 115/222 (51%), Gaps = 3/222 (1%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 +QL P + R+D V + AV L+D+W SWP+ ++LVGPSG+GK+ LA++W Sbjct: 4 PDQLPLPLPVRAALGREDYFVGQSNGLAVALLDNWQSWPNGKMVLVGPSGAGKTHLAHVW 63 Query: 85 SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLL 141 + ++ + + I P+ +ED D + + + LFH+ N LL Sbjct: 64 AAETGAAIVPAASLPQADIPAHATAPICVEDGDRIAGDRPAEEALFHLHNLALAQRQPLL 123 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 +TAR+ P W + +PDL SR++ + PDD L VI KM ADRQ + Y+ Sbjct: 124 VTARSAPSLWPLVIPDLKSRMEGTQTATLPDPDDTLLAAVIAKMLADRQCVPAADVIPYL 183 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 V+ M RS A LV +D A+ R GITRSLA ++L Sbjct: 184 VRHMPRSFAMARALVTALDANAMGRPKGITRSLARDILARLD 225 >gi|288958155|ref|YP_003448496.1| chromosomal replication initiator [Azospirillum sp. B510] gi|288910463|dbj|BAI71952.1| chromosomal replication initiator [Azospirillum sp. B510] Length = 235 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 81/226 (35%), Positives = 120/226 (53%), Gaps = 5/226 (2%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 Q+ + +D LV + AV +D WPSWP+ + L GP+G GK+ LA +W Sbjct: 4 PAQIPLDLGHRTAMGCEDFLVAPSNADAVAWLDRWPSWPAPALTLFGPAGCGKTHLAQVW 63 Query: 85 SDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSS 139 S + TR + + L+ V++ED DL+ + LFH+ N + Sbjct: 64 RAHSHALVTRGDALESGVVPSLLAPANAVVVEDADLVAGKPEREEALFHLYNLAREQRGH 123 Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199 LL+ +R P W L DL SRLK A V++ PDD L V+VK+FADRQ+ ++ Sbjct: 124 LLLLSRKAPSRWRTKLADLRSRLKGAPAVEVRPPDDALLAAVLVKLFADRQLRPGMEVIT 183 Query: 200 YIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 Y++ RMERSL FA +LV +D+ +L+ G+T LA EVL + Q+ Sbjct: 184 YLLARMERSLDFARRLVAALDHASLAAHRGVTVPLAREVLSDLQRS 229 >gi|27379234|ref|NP_770763.1| hypothetical protein bll4123 [Bradyrhizobium japonicum USDA 110] gi|27352385|dbj|BAC49388.1| bll4123 [Bradyrhizobium japonicum USDA 110] Length = 225 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 82/224 (36%), Positives = 128/224 (57%), Gaps = 1/224 (0%) Query: 20 QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSC 79 + QL FS P +SRD+ L A + LID WP WP+R++ L GP GSGKS Sbjct: 2 AGRVHPRQLAFSLPHAESLSRDNFLEGPANAAGLALIDGWPEWPNRIMWLAGPEGSGKSH 61 Query: 80 LANIWSDKSRSTRFSNIAKSLDSILID-TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDS 138 LA IW++++ + + A S + +++ED+ DF++ LFH++N + + Sbjct: 62 LAAIWAEEAGARSTTANALSAAGVPGALATGALVVEDLKAKDFDERALFHLMNLAREDGA 121 Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198 +L T R P + + L DL SRL+A VV + PDD +IVK ADRQ+ +D+ + Sbjct: 122 YVLFTGRDVPAALDIELNDLRSRLRAVPVVMLLPPDDQLFRGLIVKFCADRQLTVDESVV 181 Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +Y+ R+ERS A + V+ +D+ AL G +TR+LAAE+L++ Sbjct: 182 SYLATRLERSSAAARQAVELLDSEALRLGRPVTRALAAELLRDA 225 >gi|148255247|ref|YP_001239832.1| regulatory inactivation of DnaA Hda protein [Bradyrhizobium sp. BTAi1] gi|146407420|gb|ABQ35926.1| regulatory inactivation of DnaA Hda protein [Bradyrhizobium sp. BTAi1] Length = 228 Score = 259 bits (662), Expect = 3e-67, Method: Composition-based stats. Identities = 84/222 (37%), Positives = 132/222 (59%), Gaps = 1/222 (0%) Query: 24 KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI 83 QL F+ P ++RD+ L + + L+D+WP WP+R + LVGP GSGKS LA I Sbjct: 6 PPRQLAFALPHAESLTRDNFLEGAGNAAGLALVDAWPEWPARTMFLVGPDGSGKSHLAAI 65 Query: 84 WSDKSRSTRFSNIAKSLDSIL-IDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLM 142 W+++S + S A + ++ ++LED+ F++ LFH++N Q ++ +L+ Sbjct: 66 WAEQSGARSLSAQALDIAAVPRALATGALVLEDLSPTAFDERALFHLLNLARQDEAYILI 125 Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 TAR P + V L DL SRL+A VV + PDD +IVK+ ADRQ+ ID+ + +Y+ Sbjct: 126 TAREAPATMPVALSDLRSRLRACPVVTLLPPDDQLFRALIVKLAADRQLTIDEAVVSYLA 185 Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 R+ERS A + V +DN +L G +TR+LAAE+L+ ++ Sbjct: 186 TRIERSYAAARQTVALLDNESLRLGRPVTRALAAELLRPSEG 227 >gi|126735140|ref|ZP_01750886.1| hypothetical protein RCCS2_14724 [Roseobacter sp. CCS2] gi|126715695|gb|EBA12560.1| hypothetical protein RCCS2_14724 [Roseobacter sp. CCS2] Length = 219 Score = 257 bits (658), Expect = 9e-67, Method: Composition-based stats. Identities = 78/216 (36%), Positives = 123/216 (56%), Gaps = 3/216 (1%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL F +P + + DD V A QA ++ + +WP + + L+GPSG GKS L+ ++ Sbjct: 4 QLAFDWPTGVALGPDDFFVSDANAQAFAMLSTPEAWPEQKLALIGPSGCGKSHLSRVFQA 63 Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL-DFNDTQLFHIINSIHQYDSSLLMTAR 145 +S + +A + + V++ED++ L + +FH+ N++ SLL+T+ Sbjct: 64 QSDAFLI--VASEISATFQTDASTVIIEDMETLPSAAEEAVFHLHNNLRNAGGSLLLTSD 121 Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 P W + LPDL SR++A TVV+I PDD L +I+K+FADRQI L Y+ R+ Sbjct: 122 HPPSRWPITLPDLASRMQATTVVQIDNPDDALLSALIMKLFADRQINPQPALVQYLSTRI 181 Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ERS A +V ++D AL++G I +SLAAE+L Sbjct: 182 ERSFAAAADIVARLDAAALAQGRKINKSLAAELLDN 217 >gi|218530297|ref|YP_002421113.1| chromosomal replication initiator DnaA [Methylobacterium chloromethanicum CM4] gi|218522600|gb|ACK83185.1| chromosomal replication initiator DnaA [Methylobacterium chloromethanicum CM4] Length = 252 Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats. Identities = 80/229 (34%), Positives = 128/229 (55%), Gaps = 2/229 (0%) Query: 20 QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSC 79 + +QL F P +D LV + E+A LI++WP WP V +L GP GSGKS Sbjct: 2 RDTEPPKQLTFDLPLDPRYGAEDFLVSPSNEEAYALIEAWPDWPDTVFLLRGPPGSGKSH 61 Query: 80 LANIWSDKSRSTRFSNIAKSLDSIL-IDTRKPVLLEDIDLLDF-NDTQLFHIINSIHQYD 137 LA+IW+ ++++ S ++D + + + +++ED+D +++ LFH++N + Sbjct: 62 LASIWATRAQAWTVSAADVAMDRVSHLISNGALVVEDVDRAAGRDESALFHLLNLARERR 121 Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 +L+TA +G+ + DL SRL+ A +I PDD L+ VIVK+FADRQ+ ID + Sbjct: 122 FPVLLTACGPVDGFGLKVADLRSRLRLAPGAEIGPPDDALLKAVIVKLFADRQLGIDTSV 181 Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + R++RSL ++V ++D AL R ITR LA VL + D Sbjct: 182 VDALALRIDRSLARVREVVAELDRDALGRRRRITRPLALAVLDRMEAAD 230 >gi|254561253|ref|YP_003068348.1| hypothetical protein METDI2832 [Methylobacterium extorquens DM4] gi|254268531|emb|CAX24488.1| conserved hypothetical protein [Methylobacterium extorquens DM4] Length = 252 Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats. Identities = 80/229 (34%), Positives = 127/229 (55%), Gaps = 2/229 (0%) Query: 20 QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSC 79 + +QL F P +D LV + E+A LI++WP WP V +L GP GSGKS Sbjct: 2 RDTEPPKQLTFDLPLDPRYGAEDFLVSPSNEEAYALIEAWPDWPDTVFLLRGPPGSGKSH 61 Query: 80 LANIWSDKSRSTRFSNIAKSLDSIL-IDTRKPVLLEDIDLLDF-NDTQLFHIINSIHQYD 137 LA+IW+ ++++ S ++D + + + +++ED+D ++ LFH++N + Sbjct: 62 LASIWATRAQAWTVSAADVAMDRVSHLISNGALVVEDVDRAAGRDEAALFHLLNLARERR 121 Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 +L+TA +G+ + DL SRL+ A +I PDD L+ VIVK+FADRQ+ ID + Sbjct: 122 FPVLLTACGPVDGFGLKVADLRSRLRLAPGAEIGPPDDALLKAVIVKLFADRQLGIDTSV 181 Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + R++RSL ++V ++D AL R ITR LA VL + D Sbjct: 182 VDALALRIDRSLARVREVVAELDRDALGRRRRITRPLALAVLDRMEAAD 230 >gi|163851490|ref|YP_001639533.1| chromosomal replication initiator DnaA [Methylobacterium extorquens PA1] gi|240138655|ref|YP_002963127.1| hypothetical protein MexAM1_META1p2048 [Methylobacterium extorquens AM1] gi|163663095|gb|ABY30462.1| chromosomal replication initiator DnaA [Methylobacterium extorquens PA1] gi|240008624|gb|ACS39850.1| conserved hypothetical protein [Methylobacterium extorquens AM1] Length = 252 Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats. Identities = 80/229 (34%), Positives = 127/229 (55%), Gaps = 2/229 (0%) Query: 20 QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSC 79 + +QL F P +D LV + E+A LI++WP WP V +L GP GSGKS Sbjct: 2 RDTEPPKQLTFDLPLDPRYGAEDFLVSPSNEEAYALIEAWPDWPDTVFLLRGPPGSGKSH 61 Query: 80 LANIWSDKSRSTRFSNIAKSLDSIL-IDTRKPVLLEDIDLLDF-NDTQLFHIINSIHQYD 137 LA+IW+ ++++ S ++D + + + +++ED+D ++ LFH++N + Sbjct: 62 LASIWATRAQAWTVSAADVAMDRVSHLISNGALVVEDVDRAAGRDEAALFHLLNLARERR 121 Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 +L+TA +G+ + DL SRL+ A +I PDD L+ VIVK+FADRQ+ ID + Sbjct: 122 FPVLLTACGPVDGFGLKVADLRSRLRLAPGAEIGPPDDALLKAVIVKLFADRQLGIDTSV 181 Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + R++RSL ++V ++D AL R ITR LA VL + D Sbjct: 182 VDALALRIDRSLARVREVVAELDRDALGRRRRITRPLALAVLDRMEAAD 230 >gi|84501589|ref|ZP_00999761.1| hypothetical protein OB2597_15345 [Oceanicola batsensis HTCC2597] gi|84390210|gb|EAQ02769.1| hypothetical protein OB2597_15345 [Oceanicola batsensis HTCC2597] Length = 226 Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats. Identities = 71/221 (32%), Positives = 121/221 (54%), Gaps = 2/221 (0%) Query: 28 LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87 L + PR G++R D +V + A+ +ID W WP ++L GP GSGK+ LA+IW+ + Sbjct: 5 LPLTHPRLPGLTRSDFVVAPSNAVALAMIDQWRDWPGGKLVLTGPPGSGKTHLAHIWAAE 64 Query: 88 SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL--DFNDTQLFHIINSIHQYDSSLLMTAR 145 + + + ++ +++ED D + LFH+ N + + LL+T Sbjct: 65 ANARILAARDLERAAVPELASTALVVEDADAIPDAAPQDALFHLHNLMREAQRPLLLTGS 124 Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 SW + LPDL SRL+ A + PDD L V+VK+F +RQ+ + ++ Y+++RM Sbjct: 125 RAVASWPLTLPDLKSRLQGAQSAVLDRPDDTLLNAVLVKLFIERQLQVSPQVVHYLLRRM 184 Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 +RS A ++V+ +D +L++ IT LAAEVL + + + Sbjct: 185 DRSFDAARRVVEALDFASLAQRRAITTRLAAEVLDKIEGAE 225 >gi|85717202|ref|ZP_01048159.1| hypothetical protein NB311A_18728 [Nitrobacter sp. Nb-311A] gi|85695982|gb|EAQ33883.1| hypothetical protein NB311A_18728 [Nitrobacter sp. Nb-311A] Length = 226 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 126/225 (56%), Gaps = 1/225 (0%) Query: 20 QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSC 79 + QL F+ P SRDD L A A+ LI+SWP WP+R+++L GP G GKS Sbjct: 2 AGRPPSRQLAFALPHAESFSRDDFLEGHANAAALSLIESWPEWPNRIMLLAGPEGCGKSH 61 Query: 80 LANIWSDKSRSTRFSNIAKSLDSILID-TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDS 138 LA IW++ + + S + ++ + +++ED++ F++ LFH++N + + Sbjct: 62 LAAIWAELAGARSISAQGLTAATVPMALATGALVVEDLNPQTFDELALFHLMNLAREETA 121 Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198 +L+TAR PV+ + L DL SRL+A VV + PDD +IVK ADRQ+ ID+ + Sbjct: 122 FVLITARVTPVAIEIGLRDLRSRLRAVPVVTLMPPDDQLFRALIVKFSADRQMNIDEAVV 181 Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 I R ERS A V ++D +L G +TR+LAAE+L+ Sbjct: 182 NLIATRTERSFAAARLAVQRLDTESLRLGRPVTRALAAELLRNYD 226 >gi|110679324|ref|YP_682331.1| hypothetical protein RD1_2043 [Roseobacter denitrificans OCh 114] gi|109455440|gb|ABG31645.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114] Length = 227 Score = 256 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 120/223 (53%), Gaps = 3/223 (1%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 EQL P + R D LV + AV LI+ W WP R ++L GP+GSGK+ LA++W Sbjct: 2 PEQLGLDLPGITALGRADFLVAPSNALAVALIEGWQDWPGRKLVLSGPAGSGKTHLAHVW 61 Query: 85 SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLL 141 + S + I R+ V +ED+ + N +T LFH+ N ++LL Sbjct: 62 AALSGAEICPARDLVGQDIPDLARRSVAIEDVPDIAGNAQAETALFHLHNLALAEGNALL 121 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 T P +W + LPDL SR++ V + LPDD L V+ K+FADRQ+ +L AY+ Sbjct: 122 FTGEAAPRAWHLNLPDLKSRIEGTQAVSLDLPDDALLSAVLAKLFADRQLTPKPELIAYL 181 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 + R++RS A ++V +D +L++ ++R LAA VL + Q Sbjct: 182 ILRIDRSFAAARRIVAALDAASLAQKRPLSRQLAAAVLDKEDQ 224 >gi|126725675|ref|ZP_01741517.1| hypothetical protein RB2150_05703 [Rhodobacterales bacterium HTCC2150] gi|126704879|gb|EBA03970.1| hypothetical protein RB2150_05703 [Rhodobacterales bacterium HTCC2150] Length = 226 Score = 255 bits (653), Expect = 3e-66, Method: Composition-based stats. Identities = 80/220 (36%), Positives = 120/220 (54%), Gaps = 2/220 (0%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 EQL F P + R D + + + AV +++ W WP R VIL G +GSGKS LA IW Sbjct: 2 AEQLIFDLPVKQALGRADFFISPSNQHAVAMLEGWRDWPERKVILTGAAGSGKSHLAQIW 61 Query: 85 SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID--LLDFNDTQLFHIINSIHQYDSSLLM 142 +D+ + L + +++ED D L +T LFH+ N + L++ Sbjct: 62 ADEVGARIVPATEVPLLMMEELDGSSIIVEDADQPLEMAAETGLFHLHNLVLASGGYLMV 121 Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 TA+T P WG+ L DL SR+ A + PD+ L+ V++K F D Q+ KL Y++ Sbjct: 122 TAKTPPSQWGLKLADLNSRMLATPQAALLAPDEGLLQAVLMKHFDDHQLSATPKLLTYML 181 Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +RM RSL A ++VD+MD LALS+ ++ LA+EVL + Sbjct: 182 KRMTRSLSAAREIVDEMDRLALSQKRKLSIELASEVLDKL 221 >gi|307946765|ref|ZP_07662100.1| ATP/GTP-binding protein [Roseibium sp. TrichSKD4] gi|307770429|gb|EFO29655.1| ATP/GTP-binding protein [Roseibium sp. TrichSKD4] Length = 225 Score = 255 bits (653), Expect = 4e-66, Method: Composition-based stats. Identities = 89/223 (39%), Positives = 129/223 (57%), Gaps = 2/223 (0%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 QL P + RDD LV + + A L++SWP+WPS VVIL GP G+GK+ L Sbjct: 3 EPPRQLPLDLPYEAALGRDDYLVGRSNQAAYELLESWPNWPSPVVILAGPVGAGKTHLVE 62 Query: 83 IWSDKSRSTRFSNIAKSLDSIL-IDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLL 141 S + + S+ + V++ED N+T LFH++N+ Q +L Sbjct: 63 ALRADSGAAVVAAPKLEEASVPDLVAAGSVVVEDAHQ-GVNETALFHLLNAARQAGVLVL 121 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 +T+RT+P +W + LPDL SRL+AAT V+I PDDD L +V++K+F+DRQ+ +D + Y+ Sbjct: 122 ITSRTWPATWSIQLPDLLSRLRAATPVEILEPDDDLLRQVLLKLFSDRQLAVDFAVIDYL 181 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 V RMERSL A VD +D AL+ + IT+ LA +VL Q Sbjct: 182 VVRMERSLEVAINAVDAIDREALAGRVKITKQLAGKVLDRVQG 224 >gi|188581279|ref|YP_001924724.1| chromosomal replication initiator DnaA [Methylobacterium populi BJ001] gi|179344777|gb|ACB80189.1| chromosomal replication initiator DnaA [Methylobacterium populi BJ001] Length = 252 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 124/225 (55%), Gaps = 2/225 (0%) Query: 24 KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI 83 +QL F P +D LV + E+A LI++WP WP V +L GP GSGKS LA+I Sbjct: 6 PPQQLTFDLPLDPRYGAEDFLVSPSNEEAYALIEAWPDWPDTVFLLRGPPGSGKSHLASI 65 Query: 84 WSDKSRSTRFSNIAKSLDSIL-IDTRKPVLLEDIDLLDF-NDTQLFHIINSIHQYDSSLL 141 W+ ++++ S + ++ + + +++ED+D ++ LFH++N + +L Sbjct: 66 WATRAQAWTVSAADVAGTNVSHLISNGALVVEDVDREAGRDEAALFHLLNLARERRFPVL 125 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 +TA +G+ + DL SRL+ A +I PDD L+ VIVK+FADRQ+ ID + + Sbjct: 126 LTACGPVDGFGLKVADLRSRLRLAPGAEIGPPDDALLKAVIVKLFADRQLGIDTSVVDAL 185 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 R++RSL ++V ++D AL R ITR LA VL D Sbjct: 186 ALRIDRSLARVREVVAELDRDALGRRRRITRPLALAVLDRMAAAD 230 >gi|56696015|ref|YP_166369.1| hypothetical protein SPO1118 [Ruegeria pomeroyi DSS-3] gi|56677752|gb|AAV94418.1| conserved hypothetical protein [Ruegeria pomeroyi DSS-3] Length = 225 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 114/224 (50%), Gaps = 4/224 (1%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 QL F P + R+D V A AV +I + WP ++L GP+G+GK+ LA++W Sbjct: 2 ARQLSFDLPAMTALGREDFFVSPANALAVAMISA-RIWPGGKLVLTGPAGAGKTHLAHVW 60 Query: 85 SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLL 141 + ++ + A I PV +ED+ LL +D + LFH+ N LL Sbjct: 61 ASETGARIIEATALVEADIPELAAGPVAVEDVPLLAGDDARQALLFHLHNLTLANGHPLL 120 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 +T R P W + LPDL SR+ AA V + PDD L V+ K+F DRQ+ ++ +Y+ Sbjct: 121 LTGRAAPGFWDLSLPDLQSRVDAAQHVALDPPDDALLGAVLAKLFVDRQLSPGPEVISYL 180 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 V+ M+RS A + V +D +AL ITR+LA +L Sbjct: 181 VKHMDRSFEAAARTVAALDRIALDEKRDITRALAVRLLSTQAGA 224 >gi|220925387|ref|YP_002500689.1| Chromosomal replication initiator DnaA [Methylobacterium nodulans ORS 2060] gi|219949994|gb|ACL60386.1| Chromosomal replication initiator DnaA [Methylobacterium nodulans ORS 2060] Length = 233 Score = 251 bits (642), Expect = 5e-65, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 116/223 (52%), Gaps = 2/223 (0%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 + QL P +D LV + E A I+SWP WP V++L GPSGSGKS LA Sbjct: 3 DLPRQLTLDLPLDPRFGPEDFLVGPSNEAAYARIESWPHWPDPVLVLTGPSGSGKSHLAA 62 Query: 83 IWSDKSRSTRFSNIAKSLDSIL-IDTRKPVLLEDIDLLDF-NDTQLFHIINSIHQYDSSL 140 +W+ +S + + ++ + +++ED D ++ LFH++N + +SL Sbjct: 63 VWAAQSGARTVGIAEVTGAAVPQLAEHPALVIEDADRRSGRDEAALFHLLNLARERGTSL 122 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 ++T WG+ PDL SRL+ A V I+ PD+ L V+VK+F DRQ+ +D + Sbjct: 123 VITGAGAVEGWGIATPDLRSRLRLAPTVAIAPPDEALLRAVLVKLFVDRQLVVDTSVVDA 182 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 + R++RSL A +V +D L+RG ITR LA L Sbjct: 183 LALRIDRSLGRARDVVAALDREGLARGRRITRPLALATLASLD 225 >gi|254487899|ref|ZP_05101104.1| chromosomal replication initiator, DnaA [Roseobacter sp. GAI101] gi|214044768|gb|EEB85406.1| chromosomal replication initiator, DnaA [Roseobacter sp. GAI101] Length = 223 Score = 250 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 77/220 (35%), Positives = 114/220 (51%), Gaps = 3/220 (1%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 +QL + P + RDD V + A +ID W +W R + L GP GSGK+ L ++W Sbjct: 2 AQQLGLALPSRAALGRDDFFVAPSNAIAAAMIDGWRTWAGRKLALTGPPGSGKTHLTHVW 61 Query: 85 SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLL 141 + +S + I R V +ED+ L+ + T LFH+ N + SLL Sbjct: 62 ATQSGARIIQARDLLRADIPDLARSCVAVEDVPLIARHPEAQTALFHLHNLVLAEGHSLL 121 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 +T W + LPDL SR++AA V + PDD L V+ K+ ADRQ+ L Y+ Sbjct: 122 LTGAPAVAQWRLTLPDLASRMQAAGAVALEAPDDMLLTAVLAKLLADRQLTPRPDLIPYL 181 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + RM+RS A LV ++D +L++ +TRSLAA+VL Sbjct: 182 LPRMDRSFAAAGDLVARLDAASLAQKKPVTRSLAAQVLDN 221 >gi|158422563|ref|YP_001523855.1| hypothetical protein AZC_0939 [Azorhizobium caulinodans ORS 571] gi|158329452|dbj|BAF86937.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571] Length = 238 Score = 250 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 125/225 (55%), Gaps = 1/225 (0%) Query: 19 DQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKS 78 + QL P + R+D L A+RLIDS+P W +RVV LVGP G+GKS Sbjct: 2 SPRDTRPRQLPLDLPATSAMQREDFLEAPGNAAALRLIDSFPDWTARVVCLVGPPGTGKS 61 Query: 79 CLANIWSDKSRSTRFSNIAKSLDSIL-IDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYD 137 LA ++++++ + S + + ++ +++ED++ F + LFH++N + Sbjct: 62 HLAAVFAERAGAATVSAVDLTRANVPEALAGGALVVEDLEPGHFEEAALFHLLNLAREQQ 121 Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 + +LMTART P W + DL SRL+A I DD L V+VK+F+DRQI +D Sbjct: 122 AHVLMTARTAPAHWKLHTADLSSRLRALPTFFIEEADDALLAAVLVKLFSDRQIPVDDAT 181 Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 Y++ RM+R+ A +V +D AL+ +TR+LAA+VL++ Sbjct: 182 VQYLLLRMDRTFEGARSVVQAIDRAALAAQRPVTRALAAQVLRDL 226 >gi|209964848|ref|YP_002297763.1| hypothetical protein RC1_1547 [Rhodospirillum centenum SW] gi|209958314|gb|ACI98950.1| conserved hypothetical protein [Rhodospirillum centenum SW] Length = 238 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 118/224 (52%), Gaps = 5/224 (2%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 +QL + D LV AV +D+WP WP+ ++L GP GSGKS LA IW Sbjct: 6 KQLSLDLGHRSAMGEADFLVAPGNADAVAWLDAWPDWPAPALVLFGPPGSGKSHLAQIWR 65 Query: 86 DKSRSTRFSNIAKSLDSIL--IDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSL 140 +SR+ LDS+ + + V+L+ + + + LFH+ N+ + SL Sbjct: 66 ARSRAVLVEPDDLHLDSVPDLLRPMRTVVLDRAHEVAGDPARERVLFHLYNAAKEIGGSL 125 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L+ A PV+W + LPDL SRL AA V ++ PDD L V+VK+FADRQI + + + + Sbjct: 126 LLLADNAPVNWVLRLPDLRSRLLAAPAVGMAAPDDALLMAVLVKLFADRQIRVGEDVIRW 185 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 ++ R ERS A ++V+ +D AL IT VL++ + Sbjct: 186 LMTRTERSFANARRVVEALDRAALEAKKPITVPFCKAVLEQDAE 229 >gi|170743265|ref|YP_001771920.1| chromosomal replication initiator DnaA [Methylobacterium sp. 4-46] gi|168197539|gb|ACA19486.1| Chromosomal replication initiator DnaA [Methylobacterium sp. 4-46] Length = 233 Score = 250 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 71/213 (33%), Positives = 113/213 (53%), Gaps = 2/213 (0%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 QL P +D LV + E A I++WP WP V++L GP GSGKS LA Sbjct: 3 EAPRQLALDLPLDPRFGPEDFLVGPSNEDAYARIEAWPDWPDPVLVLTGPPGSGKSHLAA 62 Query: 83 IWSDKSRSTRFSNIAKSLDSILIDTRKP-VLLEDIDLLDF-NDTQLFHIINSIHQYDSSL 140 IW++++ + + A + ++ +P +++ED D ++ LFH++N + L Sbjct: 63 IWAERAGARIVAAGAVTRAALPDLAGEPALVVEDADRPSGRDEPALFHLLNLARERGRGL 122 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 ++T WG PDL SRL+ A + ++ PD+ L V+VK+F DRQ+ +D + Sbjct: 123 VVTGSGPVEGWGFATPDLRSRLRLAPTLGLAPPDEALLRAVLVKLFVDRQLVVDTSVVDA 182 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233 + R++RSL A +V +D+ LSRG ITR Sbjct: 183 LALRIDRSLGRARDVVAALDHEGLSRGRRITRP 215 >gi|163745973|ref|ZP_02153332.1| hypothetical protein OIHEL45_10313 [Oceanibulbus indolifex HEL-45] gi|161380718|gb|EDQ05128.1| hypothetical protein OIHEL45_10313 [Oceanibulbus indolifex HEL-45] Length = 226 Score = 249 bits (636), Expect = 3e-64, Method: Composition-based stats. Identities = 78/219 (35%), Positives = 118/219 (53%), Gaps = 3/219 (1%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 QL + P + RD V + A+ +ID W W + L GP GSGK+ L ++W Sbjct: 2 AHQLGLNLPSRTALGRDAFFVAPSNAMAMAMIDGWRGWAGGKLALTGPQGSGKTHLTHVW 61 Query: 85 SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLL 141 +D S + S A I R PV +ED+ + +D LFH+ N + +LL Sbjct: 62 ADLSGAQIISASALQTADIPALARGPVAVEDVHQIAQDDAAQTELFHLHNLVLAEGQALL 121 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 +T WG+ LPDL SR++ AT V++ PDD L ++VK+ ADRQ+ +L Y+ Sbjct: 122 LTGTGVVAHWGLTLPDLVSRMRGATAVEMDAPDDALLSALLVKLLADRQLTPKPELINYL 181 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + RM+RS A LVD++D +L++ +TR+LAA+VL Sbjct: 182 MTRMDRSFAAAIALVDRLDAASLAQKRPLTRALAAQVLD 220 >gi|182678282|ref|YP_001832428.1| chromosomal replication initiator DnaA [Beijerinckia indica subsp. indica ATCC 9039] gi|182634165|gb|ACB94939.1| Chromosomal replication initiator DnaA [Beijerinckia indica subsp. indica ATCC 9039] Length = 232 Score = 249 bits (636), Expect = 3e-64, Method: Composition-based stats. Identities = 77/229 (33%), Positives = 124/229 (54%), Gaps = 2/229 (0%) Query: 20 QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSC 79 +PK QL F +D V + E A +++ WP WP V++L GP+G+GKS Sbjct: 2 RPKEPARQLTFDLAGDPCFGIEDFFVSESNENAYAMLELWPDWPDSVLLLRGPAGAGKSH 61 Query: 80 LANIWSDKSRSTRFSN--IAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYD 137 L IW+ ++ + + A D + P+L+ED D + + LFH++N + + Sbjct: 62 LGAIWAARAGARILTARDFAAERDLESLARSGPLLIEDADAIGEAEASLFHLLNLVRHHH 121 Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 +L++TAR P WG+ + DL SRL+ A V I PD+D + ++VK+F DRQ+ +D L Sbjct: 122 HALVLTARRAPDFWGLRIADLLSRLRLAPVAAIEPPDEDLMRAILVKLFLDRQLVVDTGL 181 Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + ++RS A V+++D AL+RG IT+SLA VL+ + Sbjct: 182 IEHAALHLDRSFEAARDFVERLDREALARGARITKSLAGTVLQSLIPPE 230 >gi|146340319|ref|YP_001205367.1| hypothetical protein BRADO3342 [Bradyrhizobium sp. ORS278] gi|146193125|emb|CAL77136.1| conserved hypothetical protein [Bradyrhizobium sp. ORS278] Length = 225 Score = 248 bits (634), Expect = 5e-64, Method: Composition-based stats. Identities = 79/220 (35%), Positives = 127/220 (57%), Gaps = 1/220 (0%) Query: 24 KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI 83 QL + P ++RD+ L + L+D+WP WP+ + LVGP GSGKS LA I Sbjct: 6 PPRQLALALPHAESLTRDNFLEGPGNAAGLALVDAWPEWPANTMFLVGPDGSGKSHLAAI 65 Query: 84 WSDKSRSTRFSNIAKSLDSILID-TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLM 142 W+++S + S A ++ ++LED+ D ++ LFH++N Q ++ +L+ Sbjct: 66 WAERSGARSLSAHALDAGAVPGALATGALVLEDLTAADLDERALFHLLNLARQDEAYILI 125 Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 TAR PV+ + L DL SRL+A V+ + PDD +IVK+ ADRQ+ ID+ + +Y+ Sbjct: 126 TAREAPVALPIALADLRSRLRAVPVITLLPPDDQLFRALIVKLAADRQLAIDETVVSYLA 185 Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 R+ERS A + + +D+ +L G +TR+LAAE+L+ Sbjct: 186 SRIERSYAAARQTIALLDDESLRLGRPVTRALAAELLRSA 225 >gi|304391981|ref|ZP_07373923.1| ATP/GTP-binding protein [Ahrensia sp. R2A130] gi|303296210|gb|EFL90568.1| ATP/GTP-binding protein [Ahrensia sp. R2A130] Length = 223 Score = 248 bits (634), Expect = 6e-64, Method: Composition-based stats. Identities = 88/222 (39%), Positives = 131/222 (59%), Gaps = 6/222 (2%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 + +QL P +R DL+V S+ A +D+WP W + V +L GP+GSGKS LA+ Sbjct: 4 SPVDQLPLDLPTTAQAARADLVVASSNSHAAACVDAWPDWAAPVAVLAGPTGSGKSHLAS 63 Query: 83 IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLM 142 IWS S + S + + +LLED+ F+D LFH +N+ Q SLL+ Sbjct: 64 IWSSMSHAVVLSPGD------AVLAGRAMLLEDVTAGGFSDEWLFHAMNAAMQPGGSLLI 117 Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 T+R +P WGV LPDL SRL+ +V++ P+D+ L V+ K+FADRQ+ +D + Y + Sbjct: 118 TSRQWPGEWGVSLPDLQSRLRLVHLVELHEPNDELLRGVLFKLFADRQLIVDAAVIDYCI 177 Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 RMERSL A +V ++D L+L+R IT+ L AE L+ T++ Sbjct: 178 TRMERSLASALAVVRQLDVLSLARKQAITKPLVAEALRMTEE 219 >gi|146276451|ref|YP_001166610.1| chromosomal replication initiator, DnaA [Rhodobacter sphaeroides ATCC 17025] gi|145554692|gb|ABP69305.1| Chromosomal replication initiator, DnaA [Rhodobacter sphaeroides ATCC 17025] Length = 226 Score = 248 bits (633), Expect = 6e-64, Method: Composition-based stats. Identities = 80/217 (36%), Positives = 122/217 (56%), Gaps = 4/217 (1%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL F P +SR+D V A A+ +D W WP ++LVGP GSGK+ LA++W+ Sbjct: 4 QLAFDLPMRPALSREDFFVSPANALALASLDGWRDWPRGKMVLVGPRGSGKTHLAHVWAA 63 Query: 87 KSRSTRFSNIAKSLDSIL-IDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLM 142 ++ + A + + + V +ED + L + LFH+ N + + +LL+ Sbjct: 64 QAEARLIPAEALARADLPALAADGAVAVEDAERLGGERAAEEALFHLHNLMLERSGALLI 123 Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 TA T P WG+ LPDL SR++AA V ++ PDD L ++VK+FADRQI + L ++V Sbjct: 124 TADTPPRDWGLVLPDLKSRMQAAAVTRLEAPDDALLSAMLVKLFADRQIAVPGMLVPWLV 183 Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 RM+RS A LV +D +L+ I+R +AAE+L Sbjct: 184 ARMDRSCEAARALVAALDARSLAERRPISRQMAAELL 220 >gi|312112993|ref|YP_004010589.1| hypothetical protein Rvan_0200 [Rhodomicrobium vannielii ATCC 17100] gi|311218122|gb|ADP69490.1| hypothetical protein Rvan_0200 [Rhodomicrobium vannielii ATCC 17100] Length = 232 Score = 248 bits (633), Expect = 7e-64, Method: Composition-based stats. Identities = 78/218 (35%), Positives = 124/218 (56%), Gaps = 2/218 (0%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL PR D V + ++A L+ WP W + ++ GP SGK+ LA+IW Sbjct: 4 QLVLDLPRRFAYDEADFFVTARNDRAFGLVCQWPDWHAPAAVIWGPPQSGKTYLAHIW-- 61 Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTART 146 ++R+ +L+ + R+P++LED+D +T LFH +N ++ S +L+TART Sbjct: 62 QARANAAFADPAALEGHVWAARQPLVLEDVDASALPETALFHHLNLAREHGSFILLTART 121 Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206 P SW + LPDL SR+++ +I PD++ L +++K F+DR I I + AY+VQR+E Sbjct: 122 PPGSWRIALPDLRSRIRSYPTAEIQPPDEEHLAALLLKHFSDRGIEIAPDVIAYLVQRIE 181 Query: 207 RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 RS+ A+ + +D AL+ ITR+ AA+VLK Sbjct: 182 RSMAAADAVASLLDKAALAERRRITRAFAAKVLKTVSG 219 >gi|84686213|ref|ZP_01014108.1| hypothetical protein 1099457000256_RB2654_08417 [Maritimibacter alkaliphilus HTCC2654] gi|84665740|gb|EAQ12215.1| hypothetical protein RB2654_08417 [Rhodobacterales bacterium HTCC2654] Length = 227 Score = 247 bits (632), Expect = 8e-64, Method: Composition-based stats. Identities = 72/224 (32%), Positives = 114/224 (50%), Gaps = 3/224 (1%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 QL F P R D + + A+ ++ W WPS ++L GP GSGKS L +W Sbjct: 2 AHQLTFDLPVRTSRDRGDFFIADSNAVALAAVERWKDWPSAKMVLTGPDGSGKSHLVEVW 61 Query: 85 SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLL 141 + + + + + V +ED D + + LFH+ N + SLL Sbjct: 62 ATLTGAEIVPAGTLATLDTAALAGRSVAVEDADRVAGQPEAEAALFHLHNLVLAEGGSLL 121 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 +T+R P WG+ LPDL SR++ ++V + PD+ + V+VK+F DRQI + L AY+ Sbjct: 122 LTSRAAPTRWGLDLPDLASRMEGTSMVALETPDEALISAVLVKLFDDRQIAVSPNLVAYL 181 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 R+ RSL A V ++D++AL+ +TR+LAA +L + Sbjct: 182 APRLPRSLAAARDFVARLDDVALAEKRDVTRALAARLLDKDAGA 225 >gi|126463196|ref|YP_001044310.1| chromosomal replication initiator, DnaA [Rhodobacter sphaeroides ATCC 17029] gi|126104860|gb|ABN77538.1| Chromosomal replication initiator, DnaA [Rhodobacter sphaeroides ATCC 17029] Length = 226 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 78/217 (35%), Positives = 122/217 (56%), Gaps = 4/217 (1%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL F P +SR+D + A A+ +D W WP ++LVGP GSGK+ LA+IW+ Sbjct: 4 QLAFDLPIRPALSREDFFISPANALALASLDGWRDWPRGKMVLVGPRGSGKTHLAHIWAA 63 Query: 87 KSRSTRFSNIAKSLDSIL-IDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLM 142 ++ + A + + + V +ED + L + + LFH+ N + + +LL+ Sbjct: 64 QAEARLIPAEALARADLPALAADGAVAVEDAERLGGDRAAEEALFHLHNLMLERAGALLI 123 Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 TA P WG+ LPDL SR++AA+V ++ PDD L ++VK+F DRQI + L ++V Sbjct: 124 TAAGPPRDWGLGLPDLKSRMQAASVTRLEAPDDALLSAMLVKLFTDRQIAVPGMLVPWLV 183 Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 RM+RS A LV +D +L+ I+R +AAE+L Sbjct: 184 ARMDRSCEAARALVAALDARSLAERRPISRQMAAELL 220 >gi|170746927|ref|YP_001753187.1| chromosomal replication initiator DnaA [Methylobacterium radiotolerans JCM 2831] gi|170653449|gb|ACB22504.1| Chromosomal replication initiator DnaA [Methylobacterium radiotolerans JCM 2831] Length = 236 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 81/225 (36%), Positives = 124/225 (55%), Gaps = 2/225 (0%) Query: 20 QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSC 79 + QL F P R+D LV A E A LI++WP WP V++L GPSGSGKS Sbjct: 2 RENAPPRQLAFDLPLDPRFGREDFLVGPANEAAYALIEAWPDWPDSVLVLTGPSGSGKSH 61 Query: 80 LANIWSDKSRSTRFSNIAKSLDSIL-IDTRKPVLLEDIDLLD-FNDTQLFHIINSIHQYD 137 LA IW++++ + D++ + + +++EDID + ++ LFH++N + Sbjct: 62 LAAIWAERAHAWTLPAAELGADAVQHLVSNGALVVEDIDRAERLDEAALFHLLNRARERR 121 Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 +L+T+ T + G+ PDL SRL+ A I PDD L V+VK+F DRQ+ +D + Sbjct: 122 CPVLLTSATGIDALGLGTPDLRSRLRLAPRSAIEAPDDALLRAVLVKLFVDRQLVVDLGV 181 Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + R++RSL A +V ++D AL RG I+R LA VL+ Sbjct: 182 IDALALRIDRSLGRARDVVAELDRDALGRGRRISRPLALAVLRRM 226 >gi|154253765|ref|YP_001414589.1| chromosomal replication initiator DnaA [Parvibaculum lavamentivorans DS-1] gi|154157715|gb|ABS64932.1| Chromosomal replication initiator DnaA [Parvibaculum lavamentivorans DS-1] Length = 226 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 80/222 (36%), Positives = 119/222 (53%), Gaps = 2/222 (0%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 QL F R+D LV E AV LID+WP WP RVV L GP GSGK+ LA +W Sbjct: 2 PRQLAFELGHRPAFGREDFLVAPPNEAAVALIDAWPDWPDRVVALSGPEGSGKTHLAEVW 61 Query: 85 SDKSRSTRFSNIAKSLDSILID-TRKPVLLEDIDLLDFNDTQ-LFHIINSIHQYDSSLLM 142 + + + + A + + + ++LED+ D + LFH++N + + + LL+ Sbjct: 62 RNAAGAVSLAPSALAGADVPALVAARTIILEDLAAPDAAAERALFHLVNLVREEGAFLLI 121 Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 TAR + LPDL SRLKA ++ PDD L ++VK+F DRQ+ + + A++ Sbjct: 122 TARVPLSRLPLALPDLASRLKAVPQAELGPPDDALLAGILVKLFDDRQLRVAPAVIAWLA 181 Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 R+ERS+ A V ++D +LS IT LAAE+L + Sbjct: 182 ARIERSVRAARDAVAELDRASLSGKRPITVPLAAEILGTQDE 223 >gi|300024349|ref|YP_003756960.1| chromosomal replication initiator, DnaA [Hyphomicrobium denitrificans ATCC 51888] gi|299526170|gb|ADJ24639.1| chromosomal replication initiator, DnaA [Hyphomicrobium denitrificans ATCC 51888] Length = 224 Score = 245 bits (626), Expect = 5e-63, Method: Composition-based stats. Identities = 82/219 (37%), Positives = 124/219 (56%), Gaps = 2/219 (0%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 EQL F P + +D LV + AV LID WP WP ILVGP GSGK+ LAN+W Sbjct: 5 PEQLVFEMPHRAAMGLEDFLVSDSNAAAVALIDRWPDWPIGAAILVGPRGSGKTHLANVW 64 Query: 85 SDKSRSTRFSNIAKSLDSIL-IDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMT 143 +S + + + +++ + + V++E+I+ L ++ LFH++N + + +L+T Sbjct: 65 QLRSEAALHPAASLTRENVPAVASAGAVIIENIETLT-DEAALFHLLNLVREQRLQVLLT 123 Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203 T P + LPDL SRLKA + I PDD L V+VK+FADRQ+ ++ + Y++ Sbjct: 124 TDTAPGDLKIALPDLLSRLKALPLASIEAPDDALLRAVLVKLFADRQLSVEPHIVDYVLV 183 Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 RMERS+ AE+ V + D AL +TR++AA L Sbjct: 184 RMERSMSAAERFVAEADRQALVLQRRVTRAIAAAALDSL 222 >gi|209885461|ref|YP_002289318.1| chromosomal replication initiator, DnaA [Oligotropha carboxidovorans OM5] gi|209873657|gb|ACI93453.1| chromosomal replication initiator, DnaA [Oligotropha carboxidovorans OM5] Length = 230 Score = 245 bits (625), Expect = 5e-63, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 123/221 (55%), Gaps = 1/221 (0%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 QL P +SRDD L + QA+ LID WP W +RV++LVGP G GKS LA Sbjct: 5 TPPRQLALDLPHAESLSRDDYLEGPSNAQALALIDRWPDWTNRVMMLVGPEGCGKSHLAA 64 Query: 83 IWSDKSRSTRFSNIAKSLDSILID-TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLL 141 IW+ ++ + A + + +++E ++ F++ +FH++N + ++ +L Sbjct: 65 IWAAEAGARIVGAHALTPQDVPGALATGALVVEHLEPGYFDERAVFHLLNLARETNAFVL 124 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 MTAR P S+ V L D SRL+A VV + PDD L ++VK ADRQ+ +D+ + +Y+ Sbjct: 125 MTARAAPASFEVELRDAGSRLRAIPVVSVEPPDDQLLRALLVKFCADRQMAVDESVVSYL 184 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 R+ERS A V+++D AL +TR+LAA + + Sbjct: 185 ATRIERSFAAARDAVEQLDAEALRLRRPVTRALAAALFRGQ 225 >gi|323137708|ref|ZP_08072784.1| Chromosomal replication initiator DnaA [Methylocystis sp. ATCC 49242] gi|322397005|gb|EFX99530.1| Chromosomal replication initiator DnaA [Methylocystis sp. ATCC 49242] Length = 234 Score = 245 bits (625), Expect = 6e-63, Method: Composition-based stats. Identities = 82/220 (37%), Positives = 128/220 (58%), Gaps = 2/220 (0%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 QL P RDD L + A+ +++ WP WP R++ L+GP GSGKS L Sbjct: 6 RGPAQLPLELPVEPRFGRDDFLPAACNRAALAMVERWPDWPDRILSLIGPPGSGKSHLLA 65 Query: 83 IWSDKSRSTRFSNIAK-SLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLL 141 IW++ + + R + +L+++ ++++D+D + ++T LFH++N ++ LL Sbjct: 66 IWAESAGALRVDPVTLPTLEALNAAAPAAIVIDDVDRVR-DETALFHLLNFAVEHRVFLL 124 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 M+A P V LPDL SRL+ A VV+I PDD+ + V+ K+F DRQ+ +D+ AY+ Sbjct: 125 MSASRRPRPEDVRLPDLLSRLRRAPVVEIGAPDDELMRAVLEKLFRDRQLIVDEPALAYV 184 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 R+ERSL A LV +D AL+R ITR+LAAEV++ Sbjct: 185 SLRLERSLDAARALVAALDREALARRRPITRALAAEVMER 224 >gi|77464354|ref|YP_353858.1| hypothetical protein RSP_0780 [Rhodobacter sphaeroides 2.4.1] gi|332559245|ref|ZP_08413567.1| hypothetical protein RSWS8N_09320 [Rhodobacter sphaeroides WS8N] gi|77388772|gb|ABA79957.1| hypothetical protein with ATP/GTP-binding site [Rhodobacter sphaeroides 2.4.1] gi|332276957|gb|EGJ22272.1| hypothetical protein RSWS8N_09320 [Rhodobacter sphaeroides WS8N] Length = 226 Score = 244 bits (624), Expect = 8e-63, Method: Composition-based stats. Identities = 77/217 (35%), Positives = 121/217 (55%), Gaps = 4/217 (1%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL F P +SR+D + A A+ +D W WP ++LVGP GSGK+ LA+IW+ Sbjct: 4 QLAFDLPIRPALSREDFFISPANALALASLDGWRDWPRGKMVLVGPRGSGKTHLAHIWAA 63 Query: 87 KSRSTRFSNIAKSLDSIL-IDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLM 142 ++ + A + + + V +ED + L + + LFH+ N + + +LL+ Sbjct: 64 QAEARLIPAEALARADLPALAADGAVAVEDAERLGGDRAAEEALFHLHNLMLERAGALLI 123 Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 TA P WG+ L DL SR++AA+V ++ PDD L ++VK+F DRQI + L ++V Sbjct: 124 TAAGPPRDWGLGLADLKSRMQAASVTRLEAPDDALLSAMLVKLFTDRQIAVPGMLVPWLV 183 Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 RM+RS A LV +D +L+ I+R +AAE+L Sbjct: 184 ARMDRSCEAARALVAALDARSLAERRPISRQMAAELL 220 >gi|254451021|ref|ZP_05064458.1| chromosomal replication initiator, DnaA [Octadecabacter antarcticus 238] gi|198265427|gb|EDY89697.1| chromosomal replication initiator, DnaA [Octadecabacter antarcticus 238] Length = 230 Score = 244 bits (623), Expect = 9e-63, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 116/223 (52%), Gaps = 3/223 (1%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 Q+ F P + + D V A A L+ + +W + + ++GP+GSGK+ LA ++ Sbjct: 9 ARQMAFDLPTNVRLGAADFFVSDANTLAYVLMQTPQTWSNNNLAIIGPAGSGKTHLARVF 68 Query: 85 SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN-DTQLFHIINSIHQYDSSLLMT 143 + +S +T + D+ L ++ V+LED D L + + LFH+ N++ + LL+T Sbjct: 69 AAQSGATIINAKDVRADTDLPNSN--VVLEDGDALRTDGEEWLFHVYNALSRAGFFLLLT 126 Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203 +R P W + LPDL SRL T V I PDD L V++K FADRQ+ A++++ Sbjct: 127 SRLPPARWDIALPDLASRLSTITSVTIDDPDDPLLTAVLLKHFADRQLAPTPNAVAFLMK 186 Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + RS ++VD +D AL++ +TR VL + Sbjct: 187 HLPRSFNAVRRIVDTLDREALAQSKPLTRPFVRAVLDSMPHDE 229 >gi|254440942|ref|ZP_05054435.1| chromosomal replication initiator protein DnaA [Octadecabacter antarcticus 307] gi|198251020|gb|EDY75335.1| chromosomal replication initiator protein DnaA [Octadecabacter antarcticus 307] Length = 223 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 75/219 (34%), Positives = 114/219 (52%), Gaps = 3/219 (1%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 QL F P + + D V A A +I + +WP + L+GP+GSGK+ LA ++ Sbjct: 2 ARQLAFDLPTNVRLGAVDFFVSDANALAYAMIQTSQTWPGNKLALIGPAGSGKTHLARVF 61 Query: 85 SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN-DTQLFHIINSIHQYDSSLLMT 143 S +S + + D+ L V+LED D L + LFH N++ + LL+T Sbjct: 62 SAQSGAMIINAKDIRADTGLPSGN--VVLEDGDALPPEGEEWLFHAYNALARDGFMLLLT 119 Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203 +R W + LPDL SRL A T +KI PDD L V++K FADRQ+ + A++++ Sbjct: 120 SRLPAARWDIALPDLASRLSAITSIKIENPDDPLLTAVLLKHFADRQLAPTPEAVAFLIK 179 Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 R+ RSL ++VD +D AL++ +TR VL Sbjct: 180 RLPRSLDAVRRIVDTLDRKALAQSKPLTRPFVRAVLDSM 218 >gi|89070130|ref|ZP_01157459.1| hypothetical protein OG2516_02718 [Oceanicola granulosus HTCC2516] gi|89044247|gb|EAR50393.1| hypothetical protein OG2516_02718 [Oceanicola granulosus HTCC2516] Length = 223 Score = 242 bits (618), Expect = 4e-62, Method: Composition-based stats. Identities = 80/216 (37%), Positives = 114/216 (52%), Gaps = 2/216 (0%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 QL F +P + D V A A ++ WP ++L GP GSGK+ LA +++ Sbjct: 3 RQLSFEWPHEVTFGEDSYYVSEANGTAYAMVTRPGDWPEGKLVLAGPQGSGKTHLARLFA 62 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN-DTQLFHIINSIHQYDSSLLMTA 144 ++ + A + L +T V+LED D L + +FH+ NS+ +LL TA Sbjct: 63 ARTGALILDAPALAGTEPLPETGD-VVLEDADRLPRQAEEWVFHLHNSLAAAGGALLFTA 121 Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 P W V LPDL SRL+AATVVKI PDD L V+ K+ DRQ+ L ++V R Sbjct: 122 AAPPTRWAVALPDLVSRLQAATVVKIGDPDDALLAAVLRKILRDRQLAYADGLIPWLVPR 181 Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 M RS A + +D ++ AL RG +T +LA EVL+ Sbjct: 182 MTRSFAAARRTIDVLEAAALGRGKRLTINLAREVLQ 217 >gi|119384046|ref|YP_915102.1| hypothetical protein Pden_1301 [Paracoccus denitrificans PD1222] gi|119373813|gb|ABL69406.1| conserved hypothetical protein [Paracoccus denitrificans PD1222] Length = 229 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 79/227 (34%), Positives = 119/227 (52%), Gaps = 5/227 (2%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 QL SRDD L+ +A A+ ++D+ WP ++L+G GSGKS L W Sbjct: 2 ARQLTLDLTMPPASSRDDFLITAANRDALAMLDAPGCWPQGRLLLIGGPGSGKSHLVGFW 61 Query: 85 SDKSRSTRFSNIAKSLDSI--LIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSS 139 + + + + + + L+ +++ED + N + LFH+ N + Sbjct: 62 AAEHGAQICHGWTLAPEGVDELVQPGAALVVEDAHEIGGNPTAEQGLFHLWNLAGARGAL 121 Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199 LL+TAR+ P WGV LPDL SRL+ A + PDD L V+VK+FADRQI + ++ Sbjct: 122 LLITARSAPRDWGVALPDLRSRLETAAQAILGPPDDAMLTAVLVKLFADRQIQVAPEVVD 181 Query: 200 YIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 ++V RMER L A +LV +D +L+ ITR LAAE+L + D Sbjct: 182 WLVLRMERDLDMARRLVAAIDRESLADRRAITRRLAAELLDKLAPVD 228 >gi|83593498|ref|YP_427250.1| regulatory inactivation of DnaA Hda protein [Rhodospirillum rubrum ATCC 11170] gi|83576412|gb|ABC22963.1| regulatory inactivation of DnaA Hda protein [Rhodospirillum rubrum ATCC 11170] Length = 228 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 72/222 (32%), Positives = 115/222 (51%), Gaps = 2/222 (0%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL P + R+ LV + AV L+++WP WP+ + GP+G+GK+ LA +++ Sbjct: 6 QLPLDLPWRPALGREHFLVAACNASAVALVEAWPHWPAPAACIHGPTGAGKTHLAQVFAT 65 Query: 87 KSRSTRFSN--IAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTA 144 ++ + I + L + + ++ED D + LFH++N+ Q SLL+TA Sbjct: 66 RAAAVVLDPAVILGTDPLTLFEGGRAAVIEDADRAGLPEATLFHLLNAARQRGGSLLLTA 125 Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 + P WGV L DL SRL A + PDD+ + V++K+F+DR + + Y++ R Sbjct: 126 LSPPARWGVHLADLRSRLAALPAEGLCEPDDELMAAVLLKLFSDRGLDVAPGAIGYLLPR 185 Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 MERS A LV D LAL G +T L ++L + D Sbjct: 186 MERSFAAARDLVVHADALALREGRAVTVPLLRQLLATPDRAD 227 >gi|83949532|ref|ZP_00958265.1| hypothetical protein ISM_00520 [Roseovarius nubinhibens ISM] gi|83837431|gb|EAP76727.1| hypothetical protein ISM_00520 [Roseovarius nubinhibens ISM] Length = 224 Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats. Identities = 80/222 (36%), Positives = 119/222 (53%), Gaps = 3/222 (1%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 +QL F P + RDD V ++ AV +I++W SWP+R ++L GPSG+GK+ LA++W Sbjct: 2 SQQLSFDLPAVPAMGRDDFFVSASNAAAVAMIETWQSWPARKLMLRGPSGAGKTHLAHVW 61 Query: 85 SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLL 141 + S + + + I PV +ED+ + + LFH+ N + +SLL Sbjct: 62 ASLSGARIIAASDLAEADIPTLASGPVAVEDLWQITGERAQERALFHLHNLVLAEGNSLL 121 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 +T+ + LPDL SR++ V+I PDD L V++K+FADRQ+ + YI Sbjct: 122 ITSSDDSALSDIHLPDLASRMEGTPGVRIEPPDDALLAAVLMKLFADRQLRPTPETLPYI 181 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 V RM R+ A LV+ +D LAL G I R LAA L Q Sbjct: 182 VPRMPRAFAAARNLVETLDQLALDTGKPINRRLAATALDNLQ 223 >gi|46202132|ref|ZP_00208394.1| COG0593: ATPase involved in DNA replication initiation [Magnetospirillum magnetotacticum MS-1] Length = 231 Score = 238 bits (609), Expect = 4e-61, Method: Composition-based stats. Identities = 76/222 (34%), Positives = 116/222 (52%), Gaps = 2/222 (0%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 E QL +F ++ +D LV +A + + WP IL GP+GSGK+ LA+++ Sbjct: 3 EAQLPLAFGHVPSLAAEDFLVAPCNAEAHAWVGAPQRWPGPASILCGPAGSGKTHLAHLF 62 Query: 85 SDKSRSTRFSNIAKSLDS--ILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLM 142 + + DS L+++ +++ED D ++ LFH+IN + LL+ Sbjct: 63 ARDGGGILVPAAQVTEDSSRPLLESVPVLVVEDCDRASLDEVALFHLINQSRELGRFLLL 122 Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 TAR+ P W V LPDL SRL A V I PDD L ++VK+F DRQ+ I + + ++V Sbjct: 123 TARSAPAHWAVRLPDLRSRLLAMPVASILAPDDALLAALLVKLFDDRQLRIGEDVVHFLV 182 Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 RMERS A LVD++D A + +T LA +L+ Sbjct: 183 GRMERSFAAAASLVDRLDRAAWAGRRAVTVPLARRILEGEDH 224 >gi|294676368|ref|YP_003576983.1| DnaA-like protein Hda [Rhodobacter capsulatus SB 1003] gi|294475188|gb|ADE84576.1| DnaA-like protein Hda [Rhodobacter capsulatus SB 1003] Length = 225 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 81/223 (36%), Positives = 122/223 (54%), Gaps = 4/223 (1%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 QL P + R+D V A A+ L+D+ +W ++L+GP G+GKS LA IW+ Sbjct: 3 RQLPLPLPVRVAEGREDFFVAPANALALSLLDAPETWAQGRMLLLGPEGAGKSHLAAIWA 62 Query: 86 DKSRSTRFSNIAKSLDSIL-IDTRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLL 141 + + +++ + V++ED L ++ LFH++N L Sbjct: 63 SERGAVIRPAADLRPETVADLAATGAVVIEDAQHLAGRAASEQALFHLLNLTAAEGGRCL 122 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 +TA T P WGV LPDL SRL A V+I+ PD+ L V+VK+FADRQ+ + + L ++ Sbjct: 123 ITAPTPPRDWGVALPDLKSRLDATQSVRIAPPDEALLAAVLVKLFADRQLTVPQSLIDWL 182 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 V RMER+L A +V+ +D AL+ G ITR++AAEVL Q Sbjct: 183 VLRMERALGTARAVVEALDARALAEGRAITRAMAAEVLDRLQG 225 >gi|310815333|ref|YP_003963297.1| DnaA-like protein [Ketogulonicigenium vulgare Y25] gi|308754068|gb|ADO41997.1| DnaA-like protein [Ketogulonicigenium vulgare Y25] Length = 223 Score = 235 bits (601), Expect = 4e-60, Method: Composition-based stats. Identities = 68/218 (31%), Positives = 110/218 (50%), Gaps = 2/218 (0%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 +QL F P ++ D +V A E A ++ P WP + L+G G+GK+ LA +W Sbjct: 2 AQQLSFDLPIRPSLAAGDYVVSEANEAAYVMLCEEP-WPINKLALIGAPGAGKTHLARVW 60 Query: 85 SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN-DTQLFHIINSIHQYDSSLLMT 143 + + L +++EDI+ L + +FH+ N + LL+T Sbjct: 61 QAQEGGHVWQAGGLDPQGGLPPDGANLVIEDIEHLPRRAEEYVFHVHNHLMNTGGHLLVT 120 Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203 + P W + LPDL SR++A VV I PD+ + V+ K+FADRQ+ + Y+V Sbjct: 121 SDRGPGDWAIRLPDLASRMQAMAVVPIGDPDEWLMTAVLAKLFADRQLVPTPDVLPYLVS 180 Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 R+ RSL A ++V +MD AL++ + R +A +VL Sbjct: 181 RLPRSLAVAAEVVAQMDAAALAQRRPLNRPMARQVLDN 218 >gi|89053548|ref|YP_508999.1| chromosomal replication initiator, DnaA [Jannaschia sp. CCS1] gi|88863097|gb|ABD53974.1| Chromosomal replication initiator DnaA [Jannaschia sp. CCS1] Length = 233 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 66/211 (31%), Positives = 108/211 (51%), Gaps = 3/211 (1%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 QL F P + RDD V +A AV ID+W WP+ ++L GP SGK+ LA++W Sbjct: 2 SRQLTFDLPLRPAMGRDDFFVSAANAGAVAQIDAWEGWPTAKLVLCGPPASGKTHLAHVW 61 Query: 85 SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLL 141 + + + + T +++ED + + + + +FHI N++ + LL Sbjct: 62 AATTGAQIVQATDIVSQIERLSTAPALVIEDAEDISEDALAEEGMFHIHNALSHRGAPLL 121 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 +TAR P WG LPDL SR+ A + ++ PDD L V++K DR++ + K+ + Sbjct: 122 ITARLPPSRWGTQLPDLASRMAQAGLARLEAPDDALLMAVMMKRAFDRKLPLSPKILTFA 181 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITR 232 R+ERS A+ + ++D LALS + Sbjct: 182 APRLERSFAAADAFIARVDALALSEKRKPSL 212 >gi|296446895|ref|ZP_06888831.1| Chromosomal replication initiator DnaA [Methylosinus trichosporium OB3b] gi|296255570|gb|EFH02661.1| Chromosomal replication initiator DnaA [Methylosinus trichosporium OB3b] Length = 232 Score = 231 bits (589), Expect = 8e-59, Method: Composition-based stats. Identities = 74/222 (33%), Positives = 113/222 (50%) Query: 22 KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 + + QL + LV A +I WP WP ++L+GP+G+GKS L Sbjct: 9 RRRAGQLPLDLAGAPRFEAEAFLVSPCNRAAFEMISRWPDWPDPALLLLGPAGAGKSHLC 68 Query: 82 NIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLL 141 I++ +S + L + + D ++T LFH++N + + +SLL Sbjct: 69 AIFAQRSDALFVDPSDLMTPQRLAASPPRAAIVDGLDAVEDETALFHLMNFLRESGASLL 128 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 + R P V LPDL SRL+ A VV+I PDDD + V+ K+ DRQ+ +D L Y+ Sbjct: 129 LCGRRPPSGETVALPDLLSRLRRAPVVEIGAPDDDLIRAVLEKLLRDRQLLVDPGLVDYL 188 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 R+ERSL A V +D AL+RG +TR+LA E+L+ + Sbjct: 189 ALRLERSLDAARAFVRLLDEEALARGRRVTRALAGELLEALR 230 >gi|298291115|ref|YP_003693054.1| chromosomal replication initiator, DnaA [Starkeya novella DSM 506] gi|296927626|gb|ADH88435.1| chromosomal replication initiator, DnaA [Starkeya novella DSM 506] Length = 241 Score = 229 bits (585), Expect = 3e-58, Method: Composition-based stats. Identities = 82/219 (37%), Positives = 124/219 (56%), Gaps = 3/219 (1%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 QL P +RDD L A E A+ LID+WP WPSR+V LVGP GSGKS LA I+ Sbjct: 3 ARQLPLDLPHADSRTRDDFLPGPANEGALALIDAWPDWPSRLVALVGPEGSGKSHLAAIF 62 Query: 85 SDKSRSTRFSNIAKSLDSILIDT-RKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMT 143 + ++ + A ++ +++ED+ + LFH++N + + +L+T Sbjct: 63 AAETGAQVVPAAALDAAAVPALLASGALVVEDLGEGPVPEAALFHLMNLAGEQRAHVLVT 122 Query: 144 ARTFPVSWGVC--LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 AR P + DL SRL+A VV + PD++ L V VK+FADRQI D+ L Y+ Sbjct: 123 ARRAPAALAEAIATRDLASRLRAMPVVSLGAPDEELLAAVAVKLFADRQIVPDEALLNYL 182 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + R+ERS+ +V ++D AL+R +TR+LA+E+L+ Sbjct: 183 LPRVERSIAGLRDIVGELDREALARKRPLTRALASELLR 221 >gi|163792847|ref|ZP_02186823.1| hypothetical protein BAL199_23699 [alpha proteobacterium BAL199] gi|159181493|gb|EDP66005.1| hypothetical protein BAL199_23699 [alpha proteobacterium BAL199] Length = 229 Score = 227 bits (580), Expect = 8e-58, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 111/223 (49%), Gaps = 5/223 (2%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--VILVGPSGSGKSCLAN 82 QL + R D LV + A ID WP WP+ + + +VGP+ GK+ L Sbjct: 3 PSQLILDLGYRRALGRSDYLVTACNADAAAWIDRWPDWPAPLRGLAIVGPAECGKTHLGA 62 Query: 83 IWSDKSRSTRFSNIAKSLDSILIDTRKP--VLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140 +W S + + ++D + ++D+ + L H+ N++ + S+ Sbjct: 63 VWRRASGAVAVNAADLTVDGLPDALGDATHAAVDDLTGIRAPQ-ALLHLYNTVAERGGSV 121 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L+ +RT P LPDL SRL + + PD+ L V+ K FADRQ+ + + + AY Sbjct: 122 LILSRTAPARCDFGLPDLASRLATLPIAMVGPPDEALLAGVLGKHFADRQVAVREDVVAY 181 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 +V RMERS A +LVD++D LAL+ G + R+LA L + + Sbjct: 182 LVARMERSFSAAYRLVDRLDRLALAEGRKVDRALAKRALADDE 224 >gi|90419524|ref|ZP_01227434.1| conserved hypothetical protein [Aurantimonas manganoxydans SI85-9A1] gi|90336461|gb|EAS50202.1| conserved hypothetical protein [Aurantimonas manganoxydans SI85-9A1] Length = 230 Score = 227 bits (580), Expect = 9e-58, Method: Composition-based stats. Identities = 82/217 (37%), Positives = 121/217 (55%), Gaps = 2/217 (0%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 Q+ P ++R+DL++ + AV IDSWP W V+++VGP GSGK+ LAN W Sbjct: 2 PTQIPLELPHAASLAREDLIMSPSNRLAVEAIDSWPQWRHSVLLIVGPPGSGKTHLANAW 61 Query: 85 SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTA 144 S+++ +T A D R V+++D D ++ +LF ++N+ SLL+T+ Sbjct: 62 SERAGATVARPDATEASLAADDFR--VVVDDADRTALSERELFGLVNAARLGGGSLLLTS 119 Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 R P + V DL SRL AAT+ ++ PDD L V++K+FADRQI + + Y+VQR Sbjct: 120 RVMPQAMNVATADLRSRLAAATIAELGAPDDPLLTGVLIKLFADRQIAVSPRAVNYLVQR 179 Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 MERSL A LV ++D AL+ I L VL Sbjct: 180 MERSLDAAGFLVAEIDREALATRERIGTRLLKRVLDR 216 >gi|159043293|ref|YP_001532087.1| chromosomal replication initiator [Dinoroseobacter shibae DFL 12] gi|157911053|gb|ABV92486.1| chromosomal replication initiator [Dinoroseobacter shibae DFL 12] Length = 229 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 78/227 (34%), Positives = 119/227 (52%), Gaps = 5/227 (2%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 + +QL F P + R D + +A+ ID+WP WP+ ++L GP SGK+ LA Sbjct: 2 SAPQQLAFPLPAWPALGRADFIAAPCNAEALARIDAWPDWPAPRLVLCGPPASGKTHLAQ 61 Query: 83 IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINS-IHQYDS 138 IW+ K+R+ +LD + + V +ED D L LFH+ N + + Sbjct: 62 IWAAKARAEILPARLLTLDMVAELPAQ-VAIEDADQLFGMGEAQEALFHLHNRLAAEAEG 120 Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198 +LL+T P W + LPDL SRL+A + ++S PDD L ++ K+F DRQI L Sbjct: 121 ALLITGAAPPARWSIALPDLASRLQAMPLAQLSAPDDALLGALLAKLFEDRQIAPPPNLI 180 Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 +++ RMERS A +V ++D+ ALS I +LAAE+L + Sbjct: 181 PFLLIRMERSFAAARAVVAELDHRALSERRAIGTALAAEILTSLDRA 227 >gi|294084193|ref|YP_003550951.1| hypothetical protein SAR116_0624 [Candidatus Puniceispirillum marinum IMCC1322] gi|292663766|gb|ADE38867.1| hypothetical protein SAR116_0624 [Candidatus Puniceispirillum marinum IMCC1322] Length = 228 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 112/226 (49%), Gaps = 5/226 (2%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSR--VVILVGPSGSGKSCLANI 83 +Q+ RD+ + ++ + A ID WP WP + + +VG GSGKS LA + Sbjct: 2 QQIPMDLSFRSAQDRDNFFISASNQLAADWIDRWPDWPGQMQALNIVGEPGSGKSHLAAV 61 Query: 84 WSDKSRSTRFSNIAKSLDSILIDTRK---PVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140 W +++ S S + L++ +L+++ + ++ LFH +N+I SL Sbjct: 62 WQEQTGSVSLSKADADMVHRLMEKNAEAPCFILDNLSAENSDEEALFHFLNAIKSVQGSL 121 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L+ + L DL SRLKA V +I LPDD L ++ K FA+RQ+ + Y Sbjct: 122 LILSSMPIALMNWKLADLMSRLKAINVAQIELPDDMLLFALLEKYFAERQLVAPHNMLHY 181 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 IV RM+RS ++ +D AL+ ++ +LA +VL + + D Sbjct: 182 IVSRMDRSFSAVHQIGAALDREALASKKSLSVNLARDVLHKQLEID 227 >gi|260575896|ref|ZP_05843891.1| conserved hypothetical protein [Rhodobacter sp. SW2] gi|259021822|gb|EEW25123.1| conserved hypothetical protein [Rhodobacter sp. SW2] Length = 230 Score = 226 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 78/217 (35%), Positives = 119/217 (54%), Gaps = 3/217 (1%) Query: 28 LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87 + F P + R D V A A+ +D W WP ++LVGP+G+GK+ LA+IW+ Sbjct: 1 MAFDLPTSEALGRADFCVSPANALALAALDGWRDWPGGKMLLVGPAGAGKTHLAHIWASD 60 Query: 88 SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTA 144 + + + A + + + + +ED + + N + LFH+ N + LL+TA Sbjct: 61 AGAGLIAGSALAGADLPALAQTALCVEDAESVAGNPAAEAALFHLHNLAAERGMPLLLTA 120 Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 T P WG+ LPDL SR++A + ++ PDD L ++VK+FADRQI + L Y+V R Sbjct: 121 ATPPRDWGLGLPDLASRMQATPLTRLDAPDDALLSALLVKLFADRQISVPPNLIPYLVSR 180 Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 M+RS A LV +D AL+ G ITR LAA+V+ Sbjct: 181 MDRSFAAARALVAALDARALALGRPITRQLAADVIDR 217 >gi|114704852|ref|ZP_01437760.1| hypothetical protein FP2506_07946 [Fulvimarina pelagi HTCC2506] gi|114539637|gb|EAU42757.1| hypothetical protein FP2506_07946 [Fulvimarina pelagi HTCC2506] Length = 223 Score = 225 bits (573), Expect = 6e-57, Method: Composition-based stats. Identities = 70/221 (31%), Positives = 107/221 (48%), Gaps = 4/221 (1%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 QL P + RDDL+V + A ID+WP W V+++VGP GSGK+ LA IW Sbjct: 2 ARQLPLELPSIEQLGRDDLIVSHSNTLAAEAIDAWPDWQHNVLLIVGPEGSGKTHLARIW 61 Query: 85 SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTA 144 ++ + +T + ++++DID D D+ LF IN+ +L T+ Sbjct: 62 AEAADATILGLGEIG----PLSGGFRLVIDDIDRPDVADSDLFAPINAARLGQGWVLATS 117 Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 R P LPDL SRL AA + PDD E ++ K F+D Q+ +D Y+ R Sbjct: 118 RVSPKMMAGRLPDLVSRLSAAARADLDPPDDVLFEGILAKRFSDHQLVVDPPTLTYLATR 177 Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 +ER+ A +V+ ++ AL+ IT+ VL+ Sbjct: 178 IERTGSAARAIVEDINRQALAEKSRITKPFVRRVLERHSGA 218 >gi|217977144|ref|YP_002361291.1| chromosomal replication initiator DnaA [Methylocella silvestris BL2] gi|217502520|gb|ACK49929.1| chromosomal replication initiator DnaA [Methylocella silvestris BL2] Length = 240 Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 77/219 (35%), Positives = 114/219 (52%), Gaps = 1/219 (0%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 QL G + +D + + E A ++I+ WP W + +IL+GP+GSGKS L IW Sbjct: 3 ARQLPLDLALEPGFAAEDFFISGSNESAYQMIERWPDWSNSALILIGPAGSGKSHLGAIW 62 Query: 85 SDKSRSTRFSNIAKSLDSILIDTRKPVL-LEDIDLLDFNDTQLFHIINSIHQYDSSLLMT 143 + K+ +T + + L +ED++ + QLFH++N L+MT Sbjct: 63 AAKAGATTIAAATLAGREPAALVAAGALLIEDLEAIGPGQAQLFHLVNLALPRRLPLVMT 122 Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203 AR P LPDL SRL+ A V I PDD + V+VK+ DRQ+ +D +L Y Sbjct: 123 ARRPPGPDNFDLPDLLSRLRLAPSVSIGAPDDALMRMVLVKLLMDRQLVVDVRLVDYAAL 182 Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 R++ SL A V+K+D AL+R +TR +AAEVL Sbjct: 183 RLDYSLEAARSFVEKLDREALARKSRVTRQIAAEVLSAM 221 >gi|83311942|ref|YP_422206.1| DNA replication initiation ATPase [Magnetospirillum magneticum AMB-1] gi|82946783|dbj|BAE51647.1| ATPase involved in DNA replication initiation [Magnetospirillum magneticum AMB-1] Length = 231 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 73/222 (32%), Positives = 117/222 (52%), Gaps = 2/222 (0%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 E QL +F ++ DD LV +A + + WP +L GP+ SGK+ LA+++ Sbjct: 3 EAQLPLAFGHVPSLAADDFLVAPCNAEAHAWVGAPGRWPGPASVLCGPAQSGKTHLAHLF 62 Query: 85 SDKSRSTRFSNIAKSLDS--ILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLM 142 + S + S L+++ +++ED D ++ LFH+IN + LL+ Sbjct: 63 ARDGGGRLVSAAEVTEGSSRPLLESVPVLVVEDCDRGPLDEVGLFHLINQGRELGRLLLL 122 Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 TAR P +W V LPDL SRL A V I PDD L ++VK+F DRQ+ I + + +++ Sbjct: 123 TARLPPATWAVRLPDLRSRLLAMPVAAIGAPDDALLAALLVKLFDDRQLRIGEDVVHFLI 182 Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 RMERS ++V+++DN AL+ +T LA +L+ Sbjct: 183 GRMERSFAACARMVERLDNAALASRRAVTVPLARRILEGEDH 224 >gi|221640240|ref|YP_002526502.1| Chromosomal replication initiator, DnaA [Rhodobacter sphaeroides KD131] gi|221161021|gb|ACM02001.1| Chromosomal replication initiator, DnaA [Rhodobacter sphaeroides KD131] Length = 231 Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats. Identities = 69/194 (35%), Positives = 107/194 (55%), Gaps = 4/194 (2%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL F P +SR+D + A A+ +D W WP ++LVGP GSGK+ LA+IW+ Sbjct: 4 QLAFDLPIRPALSREDFFISPANALALASLDGWRDWPRGKMVLVGPRGSGKTHLAHIWAA 63 Query: 87 KSRSTRFSNIAKSLDSIL-IDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLM 142 ++ + A + + + V +ED + L + + LFH+ N + + +LL+ Sbjct: 64 QAEARLIPAEALARADLPALAADGAVAVEDAERLGGDRAAEEALFHLHNLMLERAGALLI 123 Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 TA P WG+ L DL SR++AA+V ++ PDD L ++VK+F DRQI + L ++V Sbjct: 124 TAAGPPRDWGLGLADLKSRMQAASVTRLEAPDDALLSAMLVKLFTDRQIAVPGMLVPWLV 183 Query: 203 QRMERSLVFAEKLV 216 RM+RS A LV Sbjct: 184 ARMDRSCEAARALV 197 >gi|148284485|ref|YP_001248575.1| hypothetical protein OTBS_0856 [Orientia tsutsugamushi str. Boryong] gi|146739924|emb|CAM79922.1| conserved hypothetical protein [Orientia tsutsugamushi str. Boryong] Length = 216 Score = 221 bits (563), Expect = 8e-56, Method: Composition-based stats. Identities = 68/220 (30%), Positives = 112/220 (50%), Gaps = 9/220 (4%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPS-WP----SRVVILVGPSGSGKSCL 80 Q +FP +D +V S+ A +LI +WPS W SR +++ GP+ SGK+ L Sbjct: 1 MQHTINFPNNSKFLEEDYIVASSNFDAYQLIKNWPSMWGITPYSRSLLVCGPASSGKTYL 60 Query: 81 ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140 ANIW + + S+ T+ ++EDID ++D +L HI N +H+ + L Sbjct: 61 ANIWQRYANAVFMSSSDNI--DQFYQTKPSFIIEDIDKTHWSDKKLLHIFNILHENNKFL 118 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 ++T P LPDL SRL A +K+ PDD+ ++ V++K F++R + + ++ Y Sbjct: 119 MLTCSMHPT--NFILPDLTSRLSAVLTIKLHRPDDEMMKIVLMKAFSERSLKVSNEIINY 176 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + R+ R + V +D +L IT L E+LK Sbjct: 177 LSSRLTREFSIIHETVKLIDKYSLEHKRNITIPLLKELLK 216 >gi|239948341|ref|ZP_04700094.1| chromosomal replication initiator protein DnaA [Rickettsia endosymbiont of Ixodes scapularis] gi|239922617|gb|EER22641.1| chromosomal replication initiator protein DnaA [Rickettsia endosymbiont of Ixodes scapularis] Length = 222 Score = 220 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 59/224 (26%), Positives = 112/224 (50%), Gaps = 11/224 (4%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW----PSRVVILV-GPSGSGKSCL 80 +Q F F D+ +V S+ +QA +I +W P + +L+ GPS SGK+ L Sbjct: 2 QQYIFRFTTSNKYHPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYL 61 Query: 81 ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140 IW + S + +I +++ ++EDI+ ++ + +L HI N I++ L Sbjct: 62 TKIWQNLSNAYIIKDIF--FSEEILEKYNAFIIEDIE--NWQEPELLHIFNIINEKQKYL 117 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L+T+ S LPDL SR+K+ + ++ PDD+ ++ +I K F+ + I +++ + Sbjct: 118 LLTSSD--KSRNFTLPDLSSRIKSVLSIVLNSPDDELIKILIFKHFSISSVTISRQIIDF 175 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 ++ + R ++++ +++ AL IT SL EVL Sbjct: 176 LLVNLPREYSKIIEILENINHFALISKRKITTSLVKEVLNNYNH 219 >gi|197105152|ref|YP_002130529.1| DnaA-related protein [Phenylobacterium zucineum HLK1] gi|196478572|gb|ACG78100.1| DnaA-related protein [Phenylobacterium zucineum HLK1] Length = 273 Score = 220 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 83/225 (36%), Positives = 117/225 (52%), Gaps = 4/225 (1%) Query: 20 QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSC 79 + + QL R SRD+ V + QAV L+D+WP+W R + LVGP GSGK+ Sbjct: 47 RTRRMARQLRLRLGRPAAYSRDEFAVGPSNAQAVALLDAWPAWHGRALALVGPEGSGKTH 106 Query: 80 LANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSS 139 LA W+ + + L +P LLED+D LFH+IN + Sbjct: 107 LARAWAQAAGAVVLDREDPDLRQ---ADGRPALLEDVDQ-GVPGEALFHLINLAAREGGG 162 Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199 LL+TART P +W LPDL SRL A V +I PDD LE V+ K F DR I +++ Sbjct: 163 LLLTARTRPAAWPAALPDLRSRLNALAVAEIEPPDDAVLEGVLRKFFRDRNIRPPEEVYP 222 Query: 200 YIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 Y+++RM RS+ A ++V K+D +TR LA ++L+ Q Sbjct: 223 YLLRRMGRSIPDAREIVRKLDEAGDGELKPVTRVLARQILEGDSQ 267 >gi|67458792|ref|YP_246416.1| hypothetical protein RF_0400 [Rickettsia felis URRWXCal2] gi|67004325|gb|AAY61251.1| DnaA-like protein [Rickettsia felis URRWXCal2] Length = 222 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 59/224 (26%), Positives = 111/224 (49%), Gaps = 11/224 (4%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW----PSRVVILV-GPSGSGKSCL 80 +Q F F D+ +V S+ EQA +I +W P + +L+ GPS SGK+ L Sbjct: 2 QQYIFRFITSNKYHPDEFIVSSSNEQAYNIIKNWQCNFGVNPYKFTLLIKGPSSSGKTYL 61 Query: 81 ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140 IW + S + +I + +++ ++E+I+ ++ + L HI N I++ L Sbjct: 62 TKIWQNLSNAYIIKDIF--FNEEILEKYNAFIIENIE--NWQEPALLHIFNIINEKQKYL 117 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L+T+ S LPDL SR+K+ + ++ PDD+ ++ +I K F+ + I ++ + Sbjct: 118 LLTSSN--KSRNFTLPDLSSRIKSVLSIALNSPDDELIKILIFKHFSISSVTISGQIIDF 175 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 ++ + R ++++ ++ AL IT SL EVL + Sbjct: 176 LLVNLPREYSKIIEILENINYFALISKRKITTSLVKEVLNKYNH 219 >gi|238651086|ref|YP_002916944.1| hypothetical protein RPR_07330 [Rickettsia peacockii str. Rustic] gi|238625184|gb|ACR47890.1| hypothetical protein RPR_07330 [Rickettsia peacockii str. Rustic] Length = 222 Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 62/224 (27%), Positives = 111/224 (49%), Gaps = 11/224 (4%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW----PSRVVILV-GPSGSGKSCL 80 +Q F F D+ +V S+ +QA +I +W P + +L+ GPS SGK+ L Sbjct: 2 QQYIFRFTTSSKYHPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYL 61 Query: 81 ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140 IW + S + +I + + + ++EDI+ ++ + L HI N I++ L Sbjct: 62 TKIWQNLSNAYIIKDIF--FNEEISEKYNAFIIEDIE--NWQEPTLLHIFNIINEKQKYL 117 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L+TA S LPDL SR+K+ + ++ PDD+ ++ +I K FA + I +++ + Sbjct: 118 LLTASD--KSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFAISSVTISRQIIDF 175 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 ++ + R +++D ++ AL IT SL EVL + Sbjct: 176 LLVNLPREYSKIIEILDNINYFALIAKRKITTSLVKEVLNKYNH 219 >gi|34581398|ref|ZP_00142878.1| hypothetical protein [Rickettsia sibirica 246] gi|28262783|gb|EAA26287.1| unknown [Rickettsia sibirica 246] Length = 222 Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 62/224 (27%), Positives = 110/224 (49%), Gaps = 11/224 (4%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW----PSRVVILV-GPSGSGKSCL 80 +Q F F D+ +V S+ QA +I +W P + +L+ GPS SGK+ L Sbjct: 2 QQYIFRFTTSSKYHPDEFIVSSSNNQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYL 61 Query: 81 ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140 IW + S + +I + + + ++EDI+ ++ + L HI N I++ L Sbjct: 62 TKIWQNLSNAYIIKDIF--FNEEISEKYNAFIIEDIE--NWQEPTLLHIFNIINEKQKYL 117 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L+TA S LPDL SR+K+ + ++ PDD+ ++ +I K FA + I +++ + Sbjct: 118 LLTASD--KSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFAISSVTISRQIIDF 175 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 ++ + R +++D ++ AL IT SL EVL + Sbjct: 176 LLVNLPREYSKIIEILDNINYFALISKRKITTSLVKEVLNKYNH 219 >gi|15892902|ref|NP_360616.1| hypothetical protein RC0979 [Rickettsia conorii str. Malish 7] gi|229586980|ref|YP_002845481.1| hypothetical protein RAF_ORF0880 [Rickettsia africae ESF-5] gi|15620092|gb|AAL03517.1| unknown [Rickettsia conorii str. Malish 7] gi|228022030|gb|ACP53738.1| DnaA-like protein [Rickettsia africae ESF-5] Length = 222 Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 62/224 (27%), Positives = 111/224 (49%), Gaps = 11/224 (4%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW----PSRVVILV-GPSGSGKSCL 80 +Q F F D+ +V S+ +QA +I +W P + +L+ GPS SGK+ L Sbjct: 2 QQYIFRFTTSSKYHPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYL 61 Query: 81 ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140 IW + S + +I + + + ++EDI+ ++ + L HI N I++ L Sbjct: 62 TKIWQNLSNAYIIKDIF--FNEEISEKYNAFIIEDIE--NWQEPTLLHIFNIINEKQKYL 117 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L+TA S LPDL SR+K+ + ++ PDD+ ++ +I K FA + I +++ + Sbjct: 118 LLTASD--KSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFAISSVTISRQIIDF 175 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 ++ + R +++D ++ AL IT SL EVL + Sbjct: 176 LLVNLPREYSKIIEILDNINYFALISKRKITTSLVKEVLNKYNH 219 >gi|189184534|ref|YP_001938319.1| hypothetical protein OTT_1627 [Orientia tsutsugamushi str. Ikeda] gi|189181305|dbj|BAG41085.1| DnaA homologue Had protein [Orientia tsutsugamushi str. Ikeda] Length = 216 Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 67/220 (30%), Positives = 108/220 (49%), Gaps = 9/220 (4%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPS-W---PSRV-VILVGPSGSGKSCL 80 Q +FP +D +V S+ A +LI +WPS W P +++ GP SGK+ L Sbjct: 1 MQHTINFPNNSKYLEEDYIVTSSNFDAYQLIKNWPSMWGITPYSKSLLVCGPPSSGKTYL 60 Query: 81 ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140 ANIW + + S+ T+ ++EDID + D +L HI N +H+ + L Sbjct: 61 ANIWQRYANAVFMSSSDNI--DQFYQTKPSFIIEDIDKTHWTDKKLLHIFNILHENNKFL 118 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 ++T P LPDL SRL A +K+ PDD+ ++ V++K F++R + + ++ Y Sbjct: 119 MLTCSMHPT--NFILPDLASRLSAVLTIKLHRPDDEMMKIVLMKAFSERSLKVSTEIINY 176 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + R+ R V +D +L IT L E+LK Sbjct: 177 LSSRLTREFSIIHDTVKLIDKYSLEHKRNITIPLLKELLK 216 >gi|157826035|ref|YP_001493755.1| hypothetical protein A1C_04965 [Rickettsia akari str. Hartford] gi|157799993|gb|ABV75247.1| hypothetical protein A1C_04965 [Rickettsia akari str. Hartford] Length = 222 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 57/224 (25%), Positives = 111/224 (49%), Gaps = 11/224 (4%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPS----WPSRVVILV-GPSGSGKSCL 80 +Q F F D+ +V S+ EQA ++ +W P + +L+ GPS SGK+ L Sbjct: 2 QQYIFRFTTSNKYHHDEFIVSSSNEQAYNIVKNWQYSFGVNPYKFTVLIKGPSSSGKTYL 61 Query: 81 ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140 IW + S + + ++ +++ ++EDI+ ++ + L HI N I++ L Sbjct: 62 TKIWQNLSNAYIIKDSF--FNAEILEKYNACIIEDIE--NWQEPALLHIFNIINEKQKYL 117 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L+T+ + LPDL SR+K+ + ++ PDD+ ++ +I K F+ + I ++ + Sbjct: 118 LLTSSD--KTRNFTLPDLSSRIKSVLSIALNSPDDELIKILIFKHFSISSVTISGQIIDF 175 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 ++ + R ++++ +++ AL IT SL EVL Sbjct: 176 LLVNLPREYSKIIEILENINHSALISKRKITTSLVKEVLNNYHH 219 >gi|157964779|ref|YP_001499603.1| hypothetical protein RMA_1009 [Rickettsia massiliae MTU5] gi|157844555|gb|ABV85056.1| DnaA-like protein [Rickettsia massiliae MTU5] Length = 227 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 62/224 (27%), Positives = 111/224 (49%), Gaps = 11/224 (4%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW----PSRVVILV-GPSGSGKSCL 80 +Q F F D+ +V S+ +QA +I +W P + +L+ GPS SGK+ L Sbjct: 7 QQYIFRFTTSNKYHPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYL 66 Query: 81 ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140 IW + S + +I + +++ ++EDI+ ++ + L HI N I++ L Sbjct: 67 TKIWQNLSNAYIIKDIF--FNEEILEKYNAFIIEDIE--NWQEPTLLHIFNIINEKQKYL 122 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L+TA S LPDL SR+K+ + ++ PDD+ ++ +I K FA + I ++ + Sbjct: 123 LLTASD--KSRNFTLPDLSSRIKSVLSMLLNSPDDELIKILIFKHFAISSVTISGQIIDF 180 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 ++ + R +++D ++ AL IT SL EVL + Sbjct: 181 LLVNLPREYSKIIEILDNINYFALISKRKITTSLVKEVLNKYNH 224 >gi|114569799|ref|YP_756479.1| regulatory inactivation of DnaA Hda protein [Maricaulis maris MCS10] gi|114340261|gb|ABI65541.1| regulatory inactivation of DnaA Hda protein [Maricaulis maris MCS10] Length = 230 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 69/215 (32%), Positives = 107/215 (49%), Gaps = 2/215 (0%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 Q+ P S + + A ++ WP V+ L+GP G+GKS LA IW+ Sbjct: 8 QMALDLPARQDFSAAAFIAGPSNAAARDVLGRPDDWPRNVMALIGPEGAGKSHLAAIWAG 67 Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSS-LLMTAR 145 + ++ ++ +++ED+D +D LFH+ N + LL+TAR Sbjct: 68 RQQALVLPASTLGDRLAALEPDCAMVVEDVDQ-GVDDDALFHLFNRAAEGAIPALLLTAR 126 Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 T P W V +PDL SRL+A V + DD L +V+ K ADR + + Y++ RM Sbjct: 127 TRPAHWTVSVPDLVSRLRALVHVDLHEADDVLLTRVLEKQLADRGAPVRPGVIDYLLPRM 186 Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 ERS+ L ++MD LAL + ITR++A E+L Sbjct: 187 ERSVAAVRILAERMDKLALVKKTPITRAIAREILD 221 >gi|157828827|ref|YP_001495069.1| hypothetical protein A1G_05380 [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933553|ref|YP_001650342.1| hypothetical protein RrIowa_1158 [Rickettsia rickettsii str. Iowa] gi|157801308|gb|ABV76561.1| hypothetical protein A1G_05380 [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908640|gb|ABY72936.1| DnaA-related protein [Rickettsia rickettsii str. Iowa] Length = 222 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 61/224 (27%), Positives = 111/224 (49%), Gaps = 11/224 (4%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW----PSRVVILV-GPSGSGKSCL 80 +Q F F D+ +V S+ +QA +I +W P + +L+ GPS SGK+ L Sbjct: 2 QQYIFRFTTSSKYHPDEFIVSSSNDQAYNIIKNWQCGFGINPYKFTLLIKGPSSSGKTYL 61 Query: 81 ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140 IW + S + +I + + + +++DI+ ++ + L HI N I++ L Sbjct: 62 TKIWQNLSNAYIIKDIF--FNEEISEKYNAFIIDDIE--NWQEPTLLHIFNIINEKQKYL 117 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L+TA S LPDL SR+K+ + ++ PDD+ ++ +I K FA + I +++ + Sbjct: 118 LLTASD--KSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFAIASVTISRQIIDF 175 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 ++ + R +++D ++ AL IT SL EVL + Sbjct: 176 LLVNLPREYSKIIEILDNINYFALISKRKITTSLVKEVLNKYNH 219 >gi|255261822|ref|ZP_05341164.1| chromosomal replication initiator, DnaA [Thalassiobium sp. R2A62] gi|255104157|gb|EET46831.1| chromosomal replication initiator, DnaA [Thalassiobium sp. R2A62] Length = 224 Score = 218 bits (556), Expect = 6e-55, Method: Composition-based stats. Identities = 75/223 (33%), Positives = 113/223 (50%), Gaps = 3/223 (1%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 EQL F P + + DD V SA + R I P+WP + L+GP SGKS LA ++ Sbjct: 2 AEQLSFDLPERIAMGADDFYVSSANDVPYRAITGSPNWPDGKLALIGPKSSGKSHLARMF 61 Query: 85 SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DTQLFHIINSIHQYDSSLLM 142 + + + + + L D + +ED++ L LFH+ N + LL+ Sbjct: 62 AHDTGALILAARDLEAATNLPDA-AHIAIEDVEHLGNPAAQEYLFHLHNHLKNTGGRLLL 120 Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 T+ W + LPDL SR++A T V I PDD L VI K+FADRQ+ + AY+ Sbjct: 121 TSDRRAQDWPITLPDLASRMQATTSVYIEDPDDALLFAVISKLFADRQLSPAPTVTAYLA 180 Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 R++RS A+++V MD AL++ + R LA +VL + Sbjct: 181 ARIDRSYNAAQQIVAAMDAAALAQARELNRGLAGDVLAQMDAA 223 >gi|83945464|ref|ZP_00957811.1| hypothetical protein OA2633_01079 [Oceanicaulis alexandrii HTCC2633] gi|83851040|gb|EAP88898.1| hypothetical protein OA2633_01079 [Oceanicaulis alexandrii HTCC2633] Length = 222 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 74/217 (34%), Positives = 115/217 (52%), Gaps = 2/217 (0%) Query: 24 KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI 83 K QL + V A A+ L++ WP W ++LVGP+GSGK+ L+++ Sbjct: 2 KPGQLALDLVLEPDYRAEAFAVSEANAAALALVNRWPRWRQGHLLLVGPAGSGKTHLSHM 61 Query: 84 WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIH-QYDSSLLM 142 W+ ++R+TR + S + VL+ED D ++ LFH++N ++LM Sbjct: 62 WTARTRATRLDPASLSNGLKTVGRGAAVLVEDCDR-GVDEDALFHLLNRAAGDAGVTVLM 120 Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 TA P W V LPDL SRL A + PDD L +V+ K+F D++ + + Y++ Sbjct: 121 TAGKAPAEWPVRLPDLASRLIATETAVLHEPDDALLRQVMEKLFRDKRTPLSPGVLEYLL 180 Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 RMERS+ +A +L +D AL+R +TR+LA E L Sbjct: 181 DRMERSVDYARRLTAWLDREALARKGPVTRTLAREAL 217 >gi|51473811|ref|YP_067568.1| hypothetical protein RT0622 [Rickettsia typhi str. Wilmington] gi|51460123|gb|AAU04086.1| conserved hypothetical protein [Rickettsia typhi str. Wilmington] Length = 221 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 59/224 (26%), Positives = 110/224 (49%), Gaps = 11/224 (4%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPS----WPSRVVILV-GPSGSGKSCL 80 +Q F F D+ +V S+ QA +I +W P + +L+ GPS SGK+ L Sbjct: 2 QQYIFRFTTSNKYHPDEFIVSSSNAQAYNIIKNWQCCFGVNPYKFTLLIKGPSSSGKTYL 61 Query: 81 ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140 IW + S + +I L+ +++ ++EDI+ + + L HI N I++ L Sbjct: 62 TKIWQNLSNAYIIKDIF--LNEEILEKNNTFIIEDIE--SWQEPALLHIFNIINEKQKYL 117 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L+T+ + LPDL SR+K+ + ++ PDD+ ++ +I K F+ + I +++ Sbjct: 118 LLTSSD--KNDNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDL 175 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 ++ + R ++++ ++ AL IT SL EVL + Sbjct: 176 LLVNLPREYSKIIEILENINYFALISKRKITISLVKEVLNNYKN 219 >gi|15604478|ref|NP_220996.1| hypothetical protein RP631 [Rickettsia prowazekii str. Madrid E] gi|3861172|emb|CAA15072.1| unknown [Rickettsia prowazekii] gi|292572260|gb|ADE30175.1| DnaA-like protein [Rickettsia prowazekii Rp22] Length = 221 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 58/224 (25%), Positives = 112/224 (50%), Gaps = 11/224 (4%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWP----SWPSRVVILV-GPSGSGKSCL 80 +Q F F D+ +V S+ QA +I +W + P + +L+ GPS SGK+ L Sbjct: 2 QQYIFHFTPSNKYHPDEFIVSSSNAQAYNIIKNWQYCFGANPYKFTLLIKGPSSSGKTYL 61 Query: 81 ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140 IW + S + +I + +++ ++EDI+ ++ + L HI N I++ L Sbjct: 62 TKIWQNLSNAYLIKDIF--FNEEILEKYNTFIIEDIE--NWQEPTLLHIFNVINEKQKYL 117 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L+T+ + LPDL SR+K+ + ++ PDD+ ++ +I K F+ + I +++ + Sbjct: 118 LLTSSD--KNNNFTLPDLSSRIKSVLSILLNAPDDELIKILIFKHFSISSVTISQQIIDF 175 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 ++ + R ++++ ++ AL IT SL EVL + Sbjct: 176 LLVNLPREYSKIIEILENINYFALISKRKITISLVKEVLNNYKN 219 >gi|91205351|ref|YP_537706.1| hypothetical protein RBE_0536 [Rickettsia bellii RML369-C] gi|157826952|ref|YP_001496016.1| hypothetical protein A1I_03070 [Rickettsia bellii OSU 85-389] gi|91068895|gb|ABE04617.1| Chromosomal replication initiator protein DnaA-like protein [Rickettsia bellii RML369-C] gi|157802256|gb|ABV78979.1| hypothetical protein A1I_03070 [Rickettsia bellii OSU 85-389] Length = 220 Score = 215 bits (548), Expect = 5e-54, Method: Composition-based stats. Identities = 53/219 (24%), Positives = 103/219 (47%), Gaps = 11/219 (5%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPS----WPSRVVILV-GPSGSGKSCL 80 Q F F ++ +V + + +W + P ++ +L+ GP+ SGK+ L Sbjct: 1 MQYIFPFNNSSKYHPEEFIVSESNALVYNALQNWQNSFGVNPYKLTLLIKGPASSGKTYL 60 Query: 81 ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140 IW + S + +I D ++ ++EDI+ ++ +T L H+ N I++ L Sbjct: 61 TKIWQNLSNAYIIKDIF--FDDKILANHTAFIIEDIE--NWQETALLHLFNLINEKQKYL 116 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L+T+ LPDL SR+ + V + PDD+ ++ +I K FA + I + + + Sbjct: 117 LLTSNN--KGKNFTLPDLSSRINSILNVLLYPPDDELIKILIFKHFATSSVTISQIVIDF 174 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 ++ + R ++++ ++N AL+ IT L E L Sbjct: 175 LLVNLPREYNRILEILEYINNFALTSKRKITIPLVKEAL 213 >gi|157803499|ref|YP_001492048.1| hypothetical protein A1E_01590 [Rickettsia canadensis str. McKiel] gi|157784762|gb|ABV73263.1| hypothetical protein A1E_01590 [Rickettsia canadensis str. McKiel] Length = 222 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 59/225 (26%), Positives = 115/225 (51%), Gaps = 11/225 (4%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPS----WPSRVVILV-GPSGSGKSCL 80 +Q F F D+ +V S+ +QA +I +W P + +L+ GPS SGK+ L Sbjct: 2 QQYIFRFTTPNKYHPDEFIVSSSNDQAYNIIQNWQHRFGVNPYKFTLLIKGPSSSGKTYL 61 Query: 81 ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140 IW + S + +I + +++ ++EDI+ ++ + L +I N I++ L Sbjct: 62 TKIWQNLSNAYIIKDIF--FNEEILEQYNAFIIEDIE--NWQEPALLYIFNIINEKRKYL 117 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L+T+ F S LPDL SR+K+ + ++ PDD+ ++ +I K F+ + I +++ + Sbjct: 118 LLTS--FDKSKNFALPDLSSRIKSVLSIVLNSPDDELIKVLIFKHFSISSVIISRQIIDF 175 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 ++ + R ++++ ++ +AL+ IT SL EVL + Sbjct: 176 LLVNLPREHSKIIEILENINQIALTSKRKITTSLVKEVLNKYSHT 220 >gi|302383321|ref|YP_003819144.1| DnaA-related protein [Brevundimonas subvibrioides ATCC 15264] gi|302193949|gb|ADL01521.1| DnaA-related protein [Brevundimonas subvibrioides ATCC 15264] Length = 232 Score = 211 bits (539), Expect = 6e-53, Method: Composition-based stats. Identities = 69/224 (30%), Positives = 110/224 (49%), Gaps = 6/224 (2%) Query: 19 DQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKS 78 + +QL + + + AV + +WP+ RV+ L GP+G GKS Sbjct: 2 TARRPLRDQLRLPLTTDIIGGAATFVRSGSNAYAVDALAAWPNAAGRVMALCGPAGCGKS 61 Query: 79 CLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDS 138 LA+ W+++ + + +L L +PVLL+ D +D LFH+IN Sbjct: 62 HLASAWAERVGAIPLNGAEAALTDPLELEGRPVLLDIAQ--DADDETLFHLINLAQHDGG 119 Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198 +LLM +R P W V +PDL SRL A VV + PDD + ++ FA+R I + Sbjct: 120 ALLMVSRPSPRRWAVQVPDLRSRLDAVRVVAMEAPDDAVMSAILAARFAERSITPGDGVI 179 Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 Y+V R++RS A +V ++D+ ITR+LA +VL+ + Sbjct: 180 DYLVLRIDRSAEAAAGIVARLDDE----HRPITRALARQVLEAS 219 >gi|154247057|ref|YP_001418015.1| chromosomal replication initiator, DnaA [Xanthobacter autotrophicus Py2] gi|154161142|gb|ABS68358.1| chromosomal replication initiator, DnaA [Xanthobacter autotrophicus Py2] Length = 244 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 83/223 (37%), Positives = 134/223 (60%), Gaps = 1/223 (0%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 + QL P + R+D L A+ LID++P WP+RVV +VGP G+GKS L+ Sbjct: 6 GRPRQLPLDLPAYPALRREDFLAAPGNAAALALIDAFPEWPARVVCIVGPEGAGKSHLSA 65 Query: 83 IWSDKSRSTRFSNIAKSLDSIL-IDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLL 141 I++++S + A + + + ++LED+ F++ LFH++N + + LL Sbjct: 66 IFAERSGARTLDARALTREGVPEALASGALVLEDLSAGTFSEAALFHLLNLAREQQAYLL 125 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 MTART P S+ + DL SRL+A V +I+ DD L V+VK+FADRQ+ +D+ Y+ Sbjct: 126 MTARTPPSSFSLATADLASRLRAVPVFEIAPADDALLAAVLVKLFADRQLSVDEATVQYL 185 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 + RM+R++ A+++VD +D AL+ +TR+LAA+VLKE + Sbjct: 186 LMRMQRTVAGAKRIVDALDTAALAARRPVTRALAAQVLKELGE 228 >gi|330993500|ref|ZP_08317435.1| Chromosomal replication initiator protein dnaA [Gluconacetobacter sp. SXCC-1] gi|329759530|gb|EGG76039.1| Chromosomal replication initiator protein dnaA [Gluconacetobacter sp. SXCC-1] Length = 255 Score = 207 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 59/224 (26%), Positives = 112/224 (50%), Gaps = 9/224 (4%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL F + D + ++ A + WP R + L GP+G+GK+ + +IW+ Sbjct: 20 QLVLPFAHTPRFAASDFVFSASNAAARSWLLGPTPWPERRLALWGPAGTGKTHMLDIWAR 79 Query: 87 KSRSTRFSNIAKSLDSILIDTRK--------PVLLEDIDLLDFNDTQLFHIINSIHQYDS 138 + + + + + + L+ D+ ++ L H++NS + Sbjct: 80 RHEALLLHGGSLTHAHVAALFAARGGRRPPMAMALDGADM-CGDEHALLHLLNSAREQGM 138 Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198 ++L+ ART P W V LPDL SRL+A V + P D L +++++ A+RQI + + + Sbjct: 139 AVLLGARTPPARWPVILPDLASRLRATMAVAVGQPGDGLLRVLLLRLLAERQIVVAQPVV 198 Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++++R+ R+ + V ++D+ AL+ G +TR+LAA VL + Sbjct: 199 EWLLRRLPRTARAMQAAVRRLDHAALATGRPVTRALAASVLSDM 242 >gi|84515333|ref|ZP_01002695.1| hypothetical protein SKA53_01706 [Loktanella vestfoldensis SKA53] gi|84510616|gb|EAQ07071.1| hypothetical protein SKA53_01706 [Loktanella vestfoldensis SKA53] Length = 220 Score = 205 bits (523), Expect = 4e-51, Method: Composition-based stats. Identities = 74/218 (33%), Positives = 121/218 (55%), Gaps = 3/218 (1%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 QL F +P + + DD V +A A ++ WP +++ GP+G GKS LA I+ Sbjct: 3 ARQLSFDWPNGVALGPDDFFVSTANATAFGMVTDPARWPLCKLVITGPAGCGKSHLARIF 62 Query: 85 SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL-DFNDTQLFHIINSIHQYDSSLLMT 143 + + + + D +++ED+D L +FH+ N +H LL+T Sbjct: 63 AAGQPTQIIAAADLTADFRPKAA--ALVVEDMDTLPSAAQEAMFHLHNHLHNNGGLLLLT 120 Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203 AR P W + LPDL SR++ + VV+++ PDD L+ V++K+FADRQ+ LAAY+ Sbjct: 121 ARQTPRHWPITLPDLASRMQGSAVVQVADPDDALLQAVMMKLFADRQLLPPPDLAAYLAP 180 Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 R+ERS A +V ++D++AL+ G I++ LAA +L + Sbjct: 181 RIERSFAAAAAIVAELDSMALATGHKISQRLAARLLDK 218 >gi|162147795|ref|YP_001602256.1| DNA replication [Gluconacetobacter diazotrophicus PAl 5] gi|209542417|ref|YP_002274646.1| Chromosomal replication initiator DnaA [Gluconacetobacter diazotrophicus PAl 5] gi|161786372|emb|CAP55954.1| putative DNA replication [Gluconacetobacter diazotrophicus PAl 5] gi|209530094|gb|ACI50031.1| Chromosomal replication initiator DnaA [Gluconacetobacter diazotrophicus PAl 5] Length = 255 Score = 204 bits (520), Expect = 8e-51, Method: Composition-based stats. Identities = 59/238 (24%), Positives = 119/238 (50%), Gaps = 7/238 (2%) Query: 15 KQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSG 74 Q P++ QL F +R D + + A + P+WP + L G +G Sbjct: 8 NQDETAPRDSFGQLVLPFAHRTRHARADFVAAPSNGMARAWLLGAPAWPEHRLALWGAAG 67 Query: 75 SGKSCLANIWSDKSRSTRFSNIAKSLDSI------LIDTRKPVLLEDIDLLDFNDTQLFH 128 +GK+ L +IW+ + + + + ++ D + V ++D D ++ + L H Sbjct: 68 AGKTHLLDIWAQERGAVLLTGADLTQATLGRLFDDAPDMLRAVAVDDADRVE-DQRALLH 126 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++N+ ++ ++++ AR P W V LPDL SRL+A +++ P+D L ++++ AD Sbjct: 127 LLNAAREHRVAVVLAARLSPARWPVVLPDLASRLRATMAIELRQPEDTLLRILLLRHLAD 186 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 RQI + + + ++++R+ R+ + ++D+ L+ G +TR+LA VL + D Sbjct: 187 RQIVVSQPVTEWLLRRLPRTASAIREAAIRLDHAGLAAGRRVTRALALSVLHDMLAHD 244 >gi|315500000|ref|YP_004088803.1| chromosomal replication initiator dnaa [Asticcacaulis excentricus CB 48] gi|315418012|gb|ADU14652.1| Chromosomal replication initiator DnaA [Asticcacaulis excentricus CB 48] Length = 221 Score = 204 bits (520), Expect = 9e-51, Method: Composition-based stats. Identities = 59/220 (26%), Positives = 105/220 (47%), Gaps = 10/220 (4%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 Q + + +V A L+ W + ++L GP+GSGK+ ++++ Sbjct: 2 AHQYPLDLSLPAPYAAANFVVSDANRALFDLLRQPADWLNPHLVLTGPAGSGKTHASHVF 61 Query: 85 SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTA 144 ++ + + A + DT ++++ D F+ LFH+ N LL+ + Sbjct: 62 AETHGAHWLNPGA-----PVPDTATLFVVDEAD--TFDQEVLFHLYNRTASDGR-LLLLS 113 Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 R P W + +PD SRLKA V+ + PDD L+ V+ K+F R I + Y+ +R Sbjct: 114 RQHPAQWRIRVPDFESRLKAMRVIDMPEPDDSLLKSVLKKLFEARVITPSDDVLEYLSRR 173 Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 MERS+ A+K+V + A + G TRSLA + ++ ++ Sbjct: 174 MERSVAHAQKIVTGL--EAYANGRAFTRSLARQFIETSEN 211 >gi|218512961|ref|ZP_03509801.1| hypothetical protein Retl8_04315 [Rhizobium etli 8C-3] Length = 166 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 77/165 (46%), Positives = 101/165 (61%), Gaps = 1/165 (0%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPS 73 D + D + EQL F RDDLL+ + AV ++D+WP+WPS VV+L GP Sbjct: 3 DVKNADPKRKAGEQLPLVFSHDAASGRDDLLISERLAAAVSIVDAWPAWPSPVVVLAGPV 62 Query: 74 GSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSI 133 GSGKS LA IW + S + D+ + PVL ED D L F+D LFH+INS+ Sbjct: 63 GSGKSHLARIWRELSGAVDIRP-DLGSDAAVAAAAGPVLFEDADRLGFDDNALFHVINSV 121 Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178 ++ +SLLMT+R +P+SW V LPDL SRLKAATVV+I PD+ L Sbjct: 122 REHGTSLLMTSRLWPISWPVLLPDLRSRLKAATVVEIGEPDEALL 166 >gi|296115157|ref|ZP_06833798.1| Chromosomal replication initiator DnaA [Gluconacetobacter hansenii ATCC 23769] gi|295978258|gb|EFG84995.1| Chromosomal replication initiator DnaA [Gluconacetobacter hansenii ATCC 23769] Length = 252 Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 52/228 (22%), Positives = 106/228 (46%), Gaps = 8/228 (3%) Query: 22 KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 ++ QL F +R D + + A + +WP R + L G G GK+ L Sbjct: 4 RDTIGQLVLPFAHMQHFTRADFVAARSNAVARAWLLGRTAWPDRRLALWGARGCGKTHLL 63 Query: 82 NIWSDKSRSTRFSNIAKSLDSILIDTRK-------PVLLEDIDLLDFNDTQLFHIINSIH 134 IW+ + + S + + + ++D + ++ + H++N Sbjct: 64 EIWAAEHDAVLLSGADLTCGDVARLFGAGRGSGVVAIAVDDAECCA-DERAVLHLLNGAR 122 Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194 ++ +L ++ R P W V LPDL SRL+A V++ P+D L V++++ A+RQI + Sbjct: 123 EHGMALALSGRRPPARWPVTLPDLASRLRATMAVEVRQPEDMLLRVVLLRLLAERQIVVA 182 Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + +++ R+ R+ ++ ++D+ L+ G +TR++A L + Sbjct: 183 PAIVDWLLPRLPRTAATMLEVARRLDHATLATGRAVTRAMAVGELHDL 230 >gi|254419375|ref|ZP_05033099.1| chromosomal replication initiator protein DnaA [Brevundimonas sp. BAL3] gi|196185552|gb|EDX80528.1| chromosomal replication initiator protein DnaA [Brevundimonas sp. BAL3] Length = 224 Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 117/224 (52%), Gaps = 8/224 (3%) Query: 22 KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 + EQL R ++ + + + +AVR++ WP V+ L GP+GSGKS LA Sbjct: 3 RPNAEQLRLPLERP--LAGEAFVSSDSNAEAVRVLSRWPDGAGSVLALYGPAGSGKSRLA 60 Query: 82 NIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLL 141 W+++ + + + +L L +PVLL+ D +D LFH+IN H +LL Sbjct: 61 ADWAERVGAVPLNGVEAALVDPLELEGRPVLLDRA--RDADDESLFHLINLAHTGGGALL 118 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 + +R P +W V LPDL SRL A V + PDD L ++ FA+R I ++ AY+ Sbjct: 119 LVSRAAPRNWSVALPDLRSRLDAVRTVAVEAPDDRVLSAILRARFAERSIAPTDEVIAYL 178 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 V+R++RS A V+++D + +TR+LA +VL E Sbjct: 179 VRRLDRSADTAATAVERLD----ALHRPVTRALARQVLDEMSAA 218 >gi|56416571|ref|YP_153645.1| hypothetical protein AM296 [Anaplasma marginale str. St. Maries] gi|222474938|ref|YP_002563353.1| hypothetical protein AMF_220 [Anaplasma marginale str. Florida] gi|255002912|ref|ZP_05277876.1| hypothetical protein AmarPR_01147 [Anaplasma marginale str. Puerto Rico] gi|255004040|ref|ZP_05278841.1| hypothetical protein AmarV_01241 [Anaplasma marginale str. Virginia] gi|56387803|gb|AAV86390.1| hypothetical protein AM296 [Anaplasma marginale str. St. Maries] gi|222419074|gb|ACM49097.1| Conserved hypothetical protein [Anaplasma marginale str. Florida] Length = 221 Score = 199 bits (507), Expect = 3e-49, Method: Composition-based stats. Identities = 59/218 (27%), Positives = 101/218 (46%), Gaps = 5/218 (2%) Query: 26 EQL-FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 QL F D ++ L+ + SW +L G SGSGK+ LA++W Sbjct: 3 RQLKLFDTQEVHSYQCSDYILLDHNRHTYNLLMNTYSW--GCFVLYGKSGSGKTHLAHMW 60 Query: 85 SDKSRSTRFSNIAKSLDSI-LIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMT 143 +++ + ++I I V++EDID L +++ + H N + LLMT Sbjct: 61 QKLRKASFICHGQVIGEAIGTIRESSAVIIEDIDNLR-DESWVLHCYNFAREAGKPLLMT 119 Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203 + P L DL SR+ +A ++ PD++ L ++VK+F DRQ+ ID + YI+ Sbjct: 120 SSLPPHMLNYQLKDLESRIVSAMSASLADPDEELLRIMLVKLFTDRQMHIDVRTVNYILN 179 Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 +ERS +V+ +D + G+T V++ Sbjct: 180 NVERSFKKLSDVVNLIDTELPTNARGVTIPFVRSVIRR 217 >gi|254994786|ref|ZP_05276976.1| hypothetical protein AmarM_01237 [Anaplasma marginale str. Mississippi] Length = 221 Score = 199 bits (507), Expect = 3e-49, Method: Composition-based stats. Identities = 59/218 (27%), Positives = 101/218 (46%), Gaps = 5/218 (2%) Query: 26 EQL-FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 QL F D ++ L+ + SW +L G SGSGK+ LA++W Sbjct: 3 RQLKLFDTQEVHSYQCSDYILLDHNRHTYNLLMNTYSW--GCFVLYGKSGSGKTHLAHMW 60 Query: 85 SDKSRSTRFSNIAKSLDSI-LIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMT 143 +++ + ++I I V++EDID L +++ + H N + LLMT Sbjct: 61 QKLRKASFICHGQVIGEAIGTIRESSAVIIEDIDNLR-DESWVLHCYNFAREAGKPLLMT 119 Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203 + P L DL SR+ +A ++ PD++ L ++VK+F DRQ+ ID + YI+ Sbjct: 120 SSLPPHMLNYQLKDLESRIVSAMSASLADPDEELLRIMLVKLFTDRQMHIDIRTVNYILN 179 Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 +ERS +V+ +D + G+T V++ Sbjct: 180 NVERSFKKLSDVVNLIDTELPTNARGVTIPFVRSVIRR 217 >gi|297717796|gb|ADI50041.1| chromosomal replication initiator protein DnaA [Candidatus Odyssella thessalonicensis L13] Length = 217 Score = 198 bits (504), Expect = 7e-49, Method: Composition-based stats. Identities = 58/213 (27%), Positives = 99/213 (46%), Gaps = 3/213 (1%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 +QL P L L++ +A + +WPSWP V++VG GSGK+ +A S Sbjct: 2 QQLAIPLPDQLVTDSSTLIIEAANRDVWAWLSAWPSWPLPQVVIVGAKGSGKTHMAKALS 61 Query: 86 DKSRSTRFSNIAKSLDSI-LIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTA 144 + R++ S A + LI + +L+++ + + LFH+ N ++ ++ Sbjct: 62 AQQRASLISPSAVIHPPLALIQSADLILIDNYEQYG--EDWLFHLYNLAKEHHRQVVYFG 119 Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 T P S+ + DL SRL++ ++I PDD K+ K +R + + YI +R Sbjct: 120 HTTPASYSFKIHDLASRLRSLPCLEIQEPDDSLFRKLFRKELLNRGMVCGDDILEYIYRR 179 Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237 +RS LV +D L L + +T L E Sbjct: 180 FDRSYATIHHLVKLIDTLTLVQQRSLTLPLLKE 212 >gi|269959014|ref|YP_003328803.1| hypothetical protein ACIS_01000 [Anaplasma centrale str. Israel] gi|269848845|gb|ACZ49489.1| hypothetical protein ACIS_01000 [Anaplasma centrale str. Israel] Length = 221 Score = 198 bits (503), Expect = 7e-49, Method: Composition-based stats. Identities = 58/220 (26%), Positives = 99/220 (45%), Gaps = 5/220 (2%) Query: 26 EQL-FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 QL F D ++ L+ + W +L G SGSGK+ LA++W Sbjct: 3 RQLKLFDTQEVHSYQCSDYILLDHNRHTYNLLMNSDDW--GCFVLYGKSGSGKTHLAHMW 60 Query: 85 SDKSRSTRFSNIAKSLDSI-LIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMT 143 ++ ++I I V++EDID L +++ + H N + LLMT Sbjct: 61 KKLRKANFICYDQVIGEAIGAIRESSAVIIEDIDNLS-DESWVLHCYNFAREAGKPLLMT 119 Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203 + P L DL SR+ +A ++ PD++ L ++VK+F DRQ+ ID + YI+ Sbjct: 120 SSLPPHMLNYQLKDLESRIVSAMSASLADPDEELLRIMLVKLFTDRQMHIDIRTVNYILN 179 Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 +ERS +V+ +D + G+T V++ + Sbjct: 180 NVERSFKKLSDVVNLIDTELPTNARGVTIPFVRSVIRRSS 219 >gi|94497909|ref|ZP_01304474.1| ATPase [Sphingomonas sp. SKA58] gi|94422637|gb|EAT07673.1| ATPase [Sphingomonas sp. SKA58] Length = 216 Score = 198 bits (503), Expect = 8e-49, Method: Composition-based stats. Identities = 59/216 (27%), Positives = 90/216 (41%), Gaps = 18/216 (8%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 Q+ F G D LV A AV ++ W WP + +L GP SG+S LA ++ Sbjct: 3 QISLPFEGHEGRGEGDFLVSDANRVAVAYLERWRDWPLSIAVLTGPPRSGRSTLARQFAR 62 Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTART 146 S + + + +D +LFH N+ LL+ + Sbjct: 63 MSGGDVIDDAHEGDRPL------------------DDHRLFHAWNAAQTEHRPLLLVGQA 104 Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206 P +W V LPDL SRL A V I PD+ +I + F L ++ +R++ Sbjct: 105 PPATWPVTLPDLRSRLAAVPHVGIDAPDEMLTRALIQRSFDAAGAAYSADLPDWLARRID 164 Query: 207 RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 RS E + +D ALS G I+ ++A E L+ Sbjct: 165 RSYAAIETITRLLDRAALSSGRKISVAMAKEALQSA 200 >gi|329850486|ref|ZP_08265331.1| bacterial dnaA family protein [Asticcacaulis biprosthecum C19] gi|328840801|gb|EGF90372.1| bacterial dnaA family protein [Asticcacaulis biprosthecum C19] Length = 223 Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats. Identities = 62/219 (28%), Positives = 113/219 (51%), Gaps = 5/219 (2%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 QL SRD ++A++ + ++ +W S +IL GPSG+GKS LA+I+ Sbjct: 2 ARQLPLDLELPDRFSRDSFATNAALQAVLDVLLVPQAWISPHLILQGPSGTGKSHLAHIF 61 Query: 85 SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTA 144 + ++ + + + T V+ D ++ LFH+ N + + L++T Sbjct: 62 AAETGAHLLTADDTYQLDLAALTGSYVV---DDAETASEEALFHLSNYVQKSGQHLVLTT 118 Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 + P+ W LPDL SRL+A ++ + PD+D L V+ K+FA R I AY+ R Sbjct: 119 KIQPIIWQTALPDLGSRLRAMRLMVLPEPDEDLLAAVLKKLFAQRFIQPSDDTLAYLSTR 178 Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 +ERS+ A+K+V ++++ A G ++L + L++++ Sbjct: 179 VERSVPAAQKIVTELEHHA--NGRAFNKTLIRDFLEQSE 215 >gi|258541973|ref|YP_003187406.1| chromosomal replication initiator protein DnaA-related protein [Acetobacter pasteurianus IFO 3283-01] gi|256633051|dbj|BAH99026.1| chromosomal replication initiator protein DnaA-related protein [Acetobacter pasteurianus IFO 3283-01] gi|256636108|dbj|BAI02077.1| chromosomal replication initiator protein DnaA-related protein [Acetobacter pasteurianus IFO 3283-03] gi|256639163|dbj|BAI05125.1| chromosomal replication initiator protein DnaA-related protein [Acetobacter pasteurianus IFO 3283-07] gi|256642217|dbj|BAI08172.1| chromosomal replication initiator protein DnaA-related protein [Acetobacter pasteurianus IFO 3283-22] gi|256645272|dbj|BAI11220.1| chromosomal replication initiator protein DnaA-related protein [Acetobacter pasteurianus IFO 3283-26] gi|256648327|dbj|BAI14268.1| chromosomal replication initiator protein DnaA-related protein [Acetobacter pasteurianus IFO 3283-32] gi|256651380|dbj|BAI17314.1| chromosomal replication initiator protein DnaA-related protein [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654371|dbj|BAI20298.1| chromosomal replication initiator protein DnaA-related protein [Acetobacter pasteurianus IFO 3283-12] Length = 255 Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats. Identities = 64/236 (27%), Positives = 110/236 (46%), Gaps = 8/236 (3%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLI---DSWPSWPSRVVILV 70 QK N+ EQ+ F R D + + A + ++ WP + L Sbjct: 16 GGQKRQNEANEAEQIALPFAHRPRFGRSDFVAAPSNAAARAWVLDAEAAARWPEGRMALW 75 Query: 71 GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID----TRKPVLLEDIDLLDFNDTQL 126 G SG+GK+ L +IW+ + + + + + L++ D + N+ L Sbjct: 76 GESGTGKTHLLSIWAGRYGAPIMEGSRLNTHEAAMLFEDGGFRAAALDNADKVP-NERDL 134 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 H+IN + +LLM AR P W V LPDL SRL+A V + ++ L ++++++ Sbjct: 135 LHLINLARERRVALLMAARRPPARWPVVLPDLASRLRATASVPLGPAEEGLLHRLLLRLL 194 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 A+RQI + ++ ++++R+ R V +D AL G ITR+LAA VL+ Sbjct: 195 AERQIVVGAQVTEWLLRRLPRRASAVRDCVAMLDQAALESGGRITRALAANVLESL 250 >gi|148552965|ref|YP_001260547.1| DNA replication initiation ATPase [Sphingomonas wittichii RW1] gi|148498155|gb|ABQ66409.1| ATPase involved in DNA replication initiation [Sphingomonas wittichii RW1] Length = 207 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 60/215 (27%), Positives = 96/215 (44%), Gaps = 22/215 (10%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 +Q+ F D +V A AVR ++ W WP +L GP SG+S L I++ Sbjct: 3 DQIALPFVWPAEEDERDFIVSEANSTAVRHLEHWSLWPVMATVLTGPRKSGRSLLGRIFA 62 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTAR 145 K+ +++ D ++ +LFH N+ LL+ A Sbjct: 63 AKTGGR--------------------FVDNAD--AQDEEKLFHAWNAAQADRKPLLLAAD 100 Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 W + LPDL SRL A+ V I PD + ++ K+ R + + ++ Y+ R+ Sbjct: 101 LPSARWRIKLPDLRSRLLASPHVAIEEPDFPLMLGLVEKLLHVRGLAVRPEVVRYVASRI 160 Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 ERS V ++VD +D AL+R IT ++A E L Sbjct: 161 ERSYVGIGRIVDALDEAALARRRPITMAVAREALA 195 >gi|329114266|ref|ZP_08243028.1| Hypothetical protein APO_1054 [Acetobacter pomorum DM001] gi|326696342|gb|EGE48021.1| Hypothetical protein APO_1054 [Acetobacter pomorum DM001] Length = 255 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 63/236 (26%), Positives = 108/236 (45%), Gaps = 8/236 (3%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLI---DSWPSWPSRVVILV 70 QK + EQ+ F R D + + A + ++ WP + L Sbjct: 16 GGQKRQNEATEAEQIALPFAHRPRFGRSDFVAAPSNAAARAWVLDAEAAARWPEGRMALW 75 Query: 71 GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID----TRKPVLLEDIDLLDFNDTQL 126 G SG+GK+ L +IW+ + + + + + L++ D + N+ L Sbjct: 76 GESGTGKTHLLSIWAGRYGAPIMEGSRLNTHEAAMLFEDGGFRAAALDNADKVP-NERDL 134 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 H+IN + +LLM AR P W V LPDL SRL+A V + ++ L ++++++ Sbjct: 135 LHLINLARERRVALLMAARRPPARWPVVLPDLASRLRATASVPLGPAEEGLLHRLLLRLL 194 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 A+RQI + ++ ++++R+ R V +D AL G ITR LAA VL+ Sbjct: 195 AERQIVVGAQVTEWLLRRLPRRASAMRDCVAMLDQAALESGGRITRDLAANVLESL 250 >gi|58584988|ref|YP_198561.1| DNA replication initiation ATPase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419304|gb|AAW71319.1| Possible ATPase involved in DNA replication initiation, DnaA paralog [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 211 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 58/216 (26%), Positives = 107/216 (49%), Gaps = 8/216 (3%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 QL + SR + ++ + + + SW + + L GP GSGK+ LA+IW Sbjct: 1 MQLNLFNNNQVDYSRQNYIILDENKHIYNAVINDLSW--KYLFLFGPKGSGKTHLAHIWQ 58 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTAR 145 + + F N+ + I +LED+ + ++ L H N + + + LL+T+ Sbjct: 59 SINNA-IFINVNNFISEIRY--SNAFILEDVQDIQ-DEATLLHCYNYMKENNKRLLITSS 114 Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 T P L DL SR+ + KI ++ L +++K F+D+Q+ +D K+ YI+ R+ Sbjct: 115 TSPKRLNFKLKDLSSRILSTISAKIPSASEELLRIMLIKRFSDKQLKVDLKVINYILARI 174 Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ERS ++++K+DN ++ G +T + +LK Sbjct: 175 ERSFCSINRIIEKIDNGSM--GSNVTIPFVSTLLKR 208 >gi|88607408|ref|YP_505556.1| hypothetical protein APH_0994 [Anaplasma phagocytophilum HZ] gi|88598471|gb|ABD43941.1| conserved hypothetical protein [Anaplasma phagocytophilum HZ] Length = 220 Score = 193 bits (490), Expect = 3e-47, Method: Composition-based stats. Identities = 58/218 (26%), Positives = 96/218 (44%), Gaps = 4/218 (1%) Query: 27 QL-FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 QL F D +V + L+ + W S +L G GSGK+ LA++W Sbjct: 4 QLKLFDVKEMHSYQCSDYVVLDSNRHTYNLLMNSDLWSS--FVLYGVKGSGKTHLAHLWG 61 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTAR 145 +++ + S +I V+ EDID + ++ L H N + LMTA Sbjct: 62 KLKQASFLTYGKISDAIQVIKESNAVIAEDIDSIP-DEEWLLHCYNYSKENRKPFLMTAS 120 Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 P L DL SR+ + K+ P+++ L ++VK+F +RQ+ ID K YI+ + Sbjct: 121 VPPNLLNHSLKDLRSRIISTMSAKLVEPNEELLRIMLVKLFTERQLHIDIKTINYILNNV 180 Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 ERS +V +D S G+T +++ + Sbjct: 181 ERSFKKLSDIVRLIDIELTSSAGGVTVPFVRSIIRRVE 218 >gi|58040365|ref|YP_192329.1| DnaA-related protein [Gluconobacter oxydans 621H] gi|58002779|gb|AAW61673.1| DnaA-related protein [Gluconobacter oxydans 621H] Length = 253 Score = 192 bits (489), Expect = 4e-47, Method: Composition-based stats. Identities = 52/222 (23%), Positives = 100/222 (45%), Gaps = 4/222 (1%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 Q+ F R ++ + + + A + WP + L G SG+GK+ L W+ Sbjct: 33 QMAFPLRRVTAMTSERFINGPSNAAARAWLARNQ-WPDGRLWLWGSSGTGKTHLLTAWAH 91 Query: 87 KSRSTRFSN--IAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTA 144 + +T + S I + + +++ D ++ + H++N +LM Sbjct: 92 EHDATVLDARLFSTSSAGGRIRVQGNLAIDNADS-PGDEATMLHLLNDAFSQGDRVLMAG 150 Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 R P LPDL SRL+A P+DD +++ + ADRQ+ + + + ++ + Sbjct: 151 RLPPSRSHFMLPDLASRLRATATTATGEPEDDLRATLLLSLLADRQLVVSQTVTEWLWRH 210 Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + R+ V+++D AL+R ITR+LA E+L + + Sbjct: 211 LPRTGNALVSAVERLDEAALARKRPITRALAMEMLPDLLTPE 252 >gi|39996180|ref|NP_952131.1| chromosomal replication initiator protein DnaA, truncation [Geobacter sulfurreducens PCA] gi|39982945|gb|AAR34404.1| chromosomal replication initiator protein DnaA, truncation [Geobacter sulfurreducens PCA] Length = 258 Score = 191 bits (486), Expect = 7e-47, Method: Composition-based stats. Identities = 57/253 (22%), Positives = 96/253 (37%), Gaps = 26/253 (10%) Query: 13 PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDS--WPSWPSRVVILV 70 P K ++ +P QL F FP S D+ ++ + E A R S ++ L Sbjct: 5 PGKARSSRP-FPAMQLVFDFPVTPKYSFDNFVICAGNETACRFARRLTDESGSENLLYLH 63 Query: 71 GPSGSGKSCLA----NIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110 GPSGSGK+ L ++ + + S + Sbjct: 64 GPSGSGKTHLLMAMGACFAGRVGLRAVPCISFKDVDEIYHGEYPAEEVSRLAERFRGAPA 123 Query: 111 VLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 +L++D+ L+ + +L+ + N +Q + +T P L SRL V Sbjct: 124 LLVDDLHLIPDQQSVRVELWQLFNDFYQAGRPIAITGLNPPNELPTLDGHLTSRLLWGLV 183 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 K + DDD +++ K+ DRQI + Y++ + R + +D + A S Sbjct: 184 AKTDISDDDSRRRIMQKLADDRQIILPADAVDYLLVHVRRDVPSLVAALDAITRYAFSAK 243 Query: 228 MGITRSLAAEVLK 240 IT LA E L Sbjct: 244 RKITMRLAREALA 256 >gi|42520947|ref|NP_966862.1| chromosomal DNA replication initiator-related protein [Wolbachia endosymbiont of Drosophila melanogaster] gi|58696878|ref|ZP_00372391.1| chromosomal DNA replication initiator-related protein [Wolbachia endosymbiont of Drosophila simulans] gi|58698753|ref|ZP_00373637.1| chromosomal DNA replication initiator-related protein [Wolbachia endosymbiont of Drosophila ananassae] gi|99034226|ref|ZP_01314294.1| hypothetical protein Wendoof_01000909 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] gi|225630699|ref|YP_002727490.1| chromosomal DNA replication initiator-related protein [Wolbachia sp. wRi] gi|42410688|gb|AAS14796.1| chromosomal DNA replication initiator-related protein [Wolbachia endosymbiont of Drosophila melanogaster] gi|58534726|gb|EAL58841.1| chromosomal DNA replication initiator-related protein [Wolbachia endosymbiont of Drosophila ananassae] gi|58536904|gb|EAL60088.1| chromosomal DNA replication initiator-related protein [Wolbachia endosymbiont of Drosophila simulans] gi|225592680|gb|ACN95699.1| chromosomal DNA replication initiator-related protein [Wolbachia sp. wRi] Length = 211 Score = 191 bits (486), Expect = 8e-47, Method: Composition-based stats. Identities = 59/216 (27%), Positives = 106/216 (49%), Gaps = 8/216 (3%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 QL SR + ++ + + + SW + +IL GP SGK+ LA+IW Sbjct: 1 MQLNLFNNNQADYSRQNYIILDENKHVYNSVVNDLSW--KCLILFGPKSSGKTHLAHIWQ 58 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTAR 145 + + + + I +LED+ + ++ L H N + + D LL+T+ Sbjct: 59 SINDAIFINVNNFVSE---IRYSDAFILEDVQNI-KDEAMLLHCYNYMKENDKRLLITSS 114 Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 P L DL SR+ + VKI ++ L +++K F+D+Q+ ID K+ YI+ R+ Sbjct: 115 ISPKKLNFKLRDLSSRILSTISVKILPASEELLRIMLIKRFSDKQLKIDLKVINYILARI 174 Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ERS +K+++K+DN ++ G +T + +LK+ Sbjct: 175 ERSFYSIDKIIEKIDNESI--GSNVTVPFISTLLKK 208 >gi|167646514|ref|YP_001684177.1| DnaA-like protein [Caulobacter sp. K31] gi|167348944|gb|ABZ71679.1| DnaA-related protein [Caulobacter sp. K31] Length = 233 Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 70/222 (31%), Positives = 107/222 (48%), Gaps = 6/222 (2%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 Q R+ QA+ +D+WP+WP + LVGP+G+GK+ LA W Sbjct: 2 PRQFRLPLTTPPCWDRESFASSPTNAQALAGLDAWPAWPDGRLALVGPAGTGKTHLARDW 61 Query: 85 SDKSRSTRFSNIAKSLDSILIDT--RKPVLLEDIDLLD----FNDTQLFHIINSIHQYDS 138 + ++ + + + + + +P+L+ED D +D LFH+IN Sbjct: 62 ARRAGAVVIEAATLNHAPLDLASLRGRPLLVEDADRRADGDLVDDETLFHLINMAGVDGG 121 Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198 SLL+T R PV+W +PDL SRL A TV +I PDD LE V+ + F I L Sbjct: 122 SLLLTGRLAPVAWEAAVPDLRSRLNALTVARIVEPDDIVLEAVLRRGFEAAGIRPTADLY 181 Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 Y++ R+ RS A V +D A ++G + ++LA VL Sbjct: 182 PYLMARLPRSAPAALAAVAALDEAAAAQGREVNKALALAVLD 223 >gi|103487240|ref|YP_616801.1| ATPase involved in DNA replication initiation [Sphingopyxis alaskensis RB2256] gi|98977317|gb|ABF53468.1| ATPase involved in DNA replication initiation [Sphingopyxis alaskensis RB2256] Length = 220 Score = 189 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 62/219 (28%), Positives = 95/219 (43%), Gaps = 23/219 (10%) Query: 22 KNKEEQLFFSFPRCLGISRD-DLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80 + Q+ G + D L++ ++ AVR + +WP R +L GP GSG+S + Sbjct: 4 RAPSGQIALPLDWSAGGANDGPLVIGTSNADAVRYLRHVATWPVRTAVLTGPRGSGRSLM 63 Query: 81 ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140 +++ + + +LFH N+ S L Sbjct: 64 GRLFARDTGGRVIDG----------------------HTSVGEEELFHAWNAAQASGSPL 101 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L+ A P W V LPDL SRL A V+ I PDD +I +FA R + + +A+Y Sbjct: 102 LVIADAPPAEWNVALPDLRSRLAAVPVLVIGEPDDCLARDLIEALFAQRGVALAPGVASY 161 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 IV RMERS ++V +D +L +G + LA E L Sbjct: 162 IVPRMERSYAMIHRIVAALDAASLEQGRRLGVRLARETL 200 >gi|78221967|ref|YP_383714.1| regulatory inactivation of DnaA Hda protein [Geobacter metallireducens GS-15] gi|78193222|gb|ABB30989.1| regulatory inactivation of DnaA Hda protein [Geobacter metallireducens GS-15] Length = 243 Score = 188 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 53/240 (22%), Positives = 94/240 (39%), Gaps = 25/240 (10%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPS--WPSRVVILVGPSGSGKSCLA-- 81 QL F FP S D+ ++ S E A R + ++ L GPSGSGK+ L Sbjct: 1 MQLVFDFPVNPKYSLDNFVICSGNETAYRFVRRLTDDEGAENLLYLHGPSGSGKTHLLMA 60 Query: 82 --NIWSDKSR----------------STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123 +S ++ + A S + +L++D+ L+ Sbjct: 61 IGAHFSARAGLSSVPCISFKDVDEVYGGEYPAEAVSKLAERFRNAPALLVDDLHLIPDQQ 120 Query: 124 T---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 +L+ + N +Q + +T P L SRL V ++ + DDD Sbjct: 121 AVRVELWQLFNDFYQAGRPIAITGLYPPKELPTIDDHLISRLLWGLVARVDISDDDSRRL 180 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 ++ K+ DRQI + + Y++ + R + + +D + AL+ ++ LA E L Sbjct: 181 IMKKLADDRQIVLPADVIDYLLLHVRRDVPSLIEALDAISRYALAAKRKVSVRLAREALA 240 >gi|190571370|ref|YP_001975728.1| chromosomal DNA replication initiator-related protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018769|ref|ZP_03334577.1| chromosomal DNA replication initiator-related protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357642|emb|CAQ55086.1| chromosomal DNA replication initiator-related protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995720|gb|EEB56360.1| chromosomal DNA replication initiator-related protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 211 Score = 188 bits (479), Expect = 5e-46, Method: Composition-based stats. Identities = 59/219 (26%), Positives = 104/219 (47%), Gaps = 8/219 (3%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 QL + + + + I + SW + +IL GP+ SGK+ LA+IW Sbjct: 1 MQLNLFNNNQVDYCWQNYITLDENKHVYNSIVNDLSW--KCLILFGPNSSGKTHLAHIWQ 58 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTAR 145 K+ + + D +LED+ + ++ L H N + + D LL+T+ Sbjct: 59 SKNDAIFIDVNNFVSEMRYSD---AFILEDVQNI-KDEEMLLHCYNYMKENDKRLLITSS 114 Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 P L DL SR+ + VKI ++ L +++K F+D+Q+ ID K+ YI+ R+ Sbjct: 115 ILPKKLNFKLKDLSSRILSTISVKILPASEELLRIMLIKQFSDKQLKIDLKVIDYILARI 174 Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 ERS K+++K+DN ++ G +T +LK++ Sbjct: 175 ERSFHSINKVIEKIDNESI--GSNVTIPFINTLLKKSAN 211 >gi|66046915|ref|YP_236756.1| DNA replication initiation factor [Pseudomonas syringae pv. syringae B728a] gi|63257622|gb|AAY38718.1| DnaA family protein [Pseudomonas syringae pv. syringae B728a] Length = 261 Score = 188 bits (479), Expect = 5e-46, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 90/232 (38%), Gaps = 17/232 (7%) Query: 24 KEEQLFFSFPRCLGISRDDLLVHSAIEQAV----RLIDSWPSWPSRVVILVGPSGSGKSC 79 K QL S + + A A+ RL ++ W ++ L G G G++ Sbjct: 29 KPIQLPLSVRLRDDATFVNYYPG-ANAAALGYVERLCEADAGWTESLIYLWGKDGVGRTH 87 Query: 80 LANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLF 127 L + + L ++ ++ + V L+D+ + + LF Sbjct: 88 LLQAACLRFEQLGEPAVYLPLAEVIDEGIELFDHLEQYELVCLDDLQAIVGKPDWEEALF 147 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H+ N + LL+ A P V LPDL SRL A V ++ D+ + + + Sbjct: 148 HLFNRLRDSGRRLLIAASKSPRELPVKLPDLKSRLTMALVFQMRGLSDEDKLRALQLRAS 207 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + + + +I+ R RS+ +L++++D +L +T E L Sbjct: 208 RRGLHLTDDVGHFILTRGTRSMSALFELLERLDQASLQEKRKLTIPFLKETL 259 >gi|121997504|ref|YP_001002291.1| chromosomal replication initiator, DnaA [Halorhodospira halophila SL1] gi|121588909|gb|ABM61489.1| regulatory inactivation of DnaA Hda protein [Halorhodospira halophila SL1] Length = 241 Score = 188 bits (478), Expect = 6e-46, Method: Composition-based stats. Identities = 56/235 (23%), Positives = 95/235 (40%), Gaps = 15/235 (6%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW--PSRVVILVGPSGSGKSCLANI 83 QL + D + + A+RL+ + + L GP G GKS L Sbjct: 1 MQLPLNIRWNAAAELDRFVPGE-NDTALRLVTDLADGLLEAPALYLHGPHGVGKSHLLQG 59 Query: 84 WSDKSRSTRFSNIAKSLDSILI---------DTRKPVLLEDIDLLDFNDT---QLFHIIN 131 + + + LD +L + + + L+D+D LD D +FH+ N Sbjct: 60 ACRRVTTAGGVAVYLPLDQLLGHGAAVLDGWEQAQLIALDDLDALDGRDEWQGAVFHLYN 119 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 + + LL R P + LPDL SRL VV + PD+ ++ + A R + Sbjct: 120 RVVERGGRLLFAGRQPPAELPLDLPDLRSRLGWGPVVAVREPDETTCLAILRQRAAQRGL 179 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + A Y+++R+ R L + +D +L+ G +T E+L E + D Sbjct: 180 ELPDATARYLIRRLPRELPGLLAFFETLDRASLAAGRRLTVPFVREILAERSRPD 234 >gi|146308015|ref|YP_001188480.1| DNA replication initiation factor [Pseudomonas mendocina ymp] gi|145576216|gb|ABP85748.1| regulatory inactivation of DnaA Hda protein [Pseudomonas mendocina ymp] Length = 234 Score = 188 bits (477), Expect = 9e-46, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 92/231 (39%), Gaps = 15/231 (6%) Query: 24 KEEQLFFSFPRCLGISRDDLL---VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80 K QL + + +A+ RL ++ W ++ L G G G+S L Sbjct: 2 KPIQLPLGVRLRDDATFANYYPGANAAALGYVERLCEADAGWTESLIYLWGAEGVGRSHL 61 Query: 81 ANIWS----DKSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFN---DTQLFH 128 + + + + + + ++ + V L+D+D + + LFH Sbjct: 62 LQAACLRFEQRGDAVVYLPLTEVVQHGPELLDNLELCELVCLDDLDAVAGRSDWEEGLFH 121 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 + N + LL+ P + LPDL SRL A V ++ D+ + + + Sbjct: 122 LFNRLRDSGRRLLLAGTMSPRELPIQLPDLKSRLTLALVFQLHELSDEDKLRALQLRASR 181 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + + ++ +I+ R ERS+ +L++++D +L +T E L Sbjct: 182 RGLQMSDEVGRFILTRGERSMSALFELLERLDQASLQAQRKLTIPFLKETL 232 >gi|226945733|ref|YP_002800806.1| DNA replication initiation factor [Azotobacter vinelandii DJ] gi|226720660|gb|ACO79831.1| DnaA family protein, probable Hda [Azotobacter vinelandii DJ] Length = 234 Score = 188 bits (477), Expect = 9e-46, Method: Composition-based stats. Identities = 51/231 (22%), Positives = 91/231 (39%), Gaps = 15/231 (6%) Query: 24 KEEQLFFSFPRCLGISRDDLL---VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80 K QL + + +A+ A RL + W ++ L G G G+S L Sbjct: 2 KPIQLPLGVRLRDDATFANFYPGANAAALGYAERLCEPDAGWTESLIYLWGAEGVGRSHL 61 Query: 81 ANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFH 128 + R I L + ++ + V L+D++ + + LFH Sbjct: 62 LQAACIRFEQRRELAIYLPLAEVADYGPVLLDNLEQSELVCLDDLEAIAGRADWEEALFH 121 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 + N + LL++A P + LPDL SRL A V ++ D+ + + + Sbjct: 122 LFNRLRDCGRRLLLSASVPPRELSIELPDLKSRLTLALVFQLQGLSDEDKLRALQLRASR 181 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + + ++ +I+ R RS+ L+DK+D +L +T E L Sbjct: 182 RGLHLTDEVGRFILTRGSRSMAALFDLLDKLDQASLQAQRRLTIPFLKETL 232 >gi|330504184|ref|YP_004381053.1| DNA replication initiation factor [Pseudomonas mendocina NK-01] gi|328918469|gb|AEB59300.1| DNA replication initiation factor [Pseudomonas mendocina NK-01] Length = 234 Score = 187 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 91/231 (39%), Gaps = 15/231 (6%) Query: 24 KEEQLFFSFPRCLGISRDDLL---VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80 K QL + + +A+ RL ++ W ++ L G G G+S L Sbjct: 2 KPIQLPLGVRLRDDATFANYYPGANAAALGYVERLCEADAGWTESLIYLWGAEGVGRSHL 61 Query: 81 ANIWS----DKSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFN---DTQLFH 128 + + + + + + ++ + V L+D+D + + LFH Sbjct: 62 LQAACLRFEQRGEAVVYLPLGEVVQHGPELLDNLELCELVCLDDLDAVAGRSDWEEGLFH 121 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 + N + LL+ P + LPDL SRL A V ++ D+ + + + Sbjct: 122 LFNRLRDSGRRLLLAGTMSPRELPIQLPDLKSRLTLALVFQLHELSDEDKLRALQLRASR 181 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + + ++ +I+ R ERS+ L++++D +L +T E L Sbjct: 182 RGLQMGDEVGRFILTRGERSMSALFDLLERLDQASLQAQRKLTIPFLKETL 232 >gi|330941426|gb|EGH44239.1| DNA replication initiation factor [Pseudomonas syringae pv. pisi str. 1704B] Length = 234 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 90/231 (38%), Gaps = 15/231 (6%) Query: 24 KEEQLFFSFPRCLGISRDDLL---VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80 K QL S + + +A+ RL ++ W V+ L G G G++ L Sbjct: 2 KPIQLPLSVRLRDDATFVNYYPGANAAALGYVERLCEADAGWTQSVIYLWGKDGVGRTHL 61 Query: 81 ANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFH 128 + + L ++ ++ + V L+D+ + + LFH Sbjct: 62 LQAACLRFEQLGEPAVYLPLAEVIDEGIELFDHLEQYELVCLDDLQAIVGKPDWEEALFH 121 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 + N + LL+ A P V LPDL SRL A V ++ D+ + + + Sbjct: 122 LFNRLRDSGRRLLIAASKSPPQLPVKLPDLKSRLTMALVFQMRGLSDEDKLRALQLRASR 181 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + + + +I+ R RS+ +L++++D +L +T E L Sbjct: 182 RGLHLTDDVGHFILTRGTRSMSALFELLERLDQASLQEKRKLTIPFLKETL 232 >gi|331013495|gb|EGH93551.1| DNA replication initiation factor [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 234 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 91/231 (39%), Gaps = 15/231 (6%) Query: 24 KEEQLFFSFPRCLGISRDDLL---VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80 K QL S + + +A+ RL ++ W ++ L G G G++ L Sbjct: 2 KPIQLPLSVRLRDDATFVNYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRTHL 61 Query: 81 ANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFH 128 + + L ++ ++ + V L+D+ + + LFH Sbjct: 62 LQAACLRFEQLGEPAVYLPLAEVIDEGIELFDHLEQYELVCLDDLQAIVGKPEWEEALFH 121 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 + N + LL+ A P V LPDL SRL A V ++ D+ + + + Sbjct: 122 LFNRLRDSGRRLLIAASKSPPELPVKLPDLKSRLTMALVFQMRGLSDEDKLRALQLRASR 181 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + + ++ +I+ R RS+ +L++++D +L +T E L Sbjct: 182 RGLHLTDEVGHFILTRGTRSMSALFELLERLDQASLQEKRKLTIPFLKETL 232 >gi|28868909|ref|NP_791528.1| DnaA family protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213971898|ref|ZP_03399998.1| DnaA family protein [Pseudomonas syringae pv. tomato T1] gi|301384468|ref|ZP_07232886.1| DNA replication initiation factor [Pseudomonas syringae pv. tomato Max13] gi|302062183|ref|ZP_07253724.1| DNA replication initiation factor [Pseudomonas syringae pv. tomato K40] gi|302131786|ref|ZP_07257776.1| DNA replication initiation factor [Pseudomonas syringae pv. tomato NCPPB 1108] gi|302187852|ref|ZP_07264525.1| DNA replication initiation factor [Pseudomonas syringae pv. syringae 642] gi|28852148|gb|AAO55223.1| DnaA family protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213923323|gb|EEB56918.1| DnaA family protein [Pseudomonas syringae pv. tomato T1] gi|330877082|gb|EGH11231.1| DNA replication initiation factor [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330966590|gb|EGH66850.1| DNA replication initiation factor [Pseudomonas syringae pv. actinidiae str. M302091] gi|331016800|gb|EGH96856.1| DNA replication initiation factor [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 234 Score = 186 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 90/231 (38%), Gaps = 15/231 (6%) Query: 24 KEEQLFFSFPRCLGISRDDLL---VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80 K QL S + + +A+ RL ++ W ++ L G G G++ L Sbjct: 2 KPIQLPLSVRLRDDATFVNYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRTHL 61 Query: 81 ANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFH 128 + + L ++ ++ + V L+D+ + + LFH Sbjct: 62 LQAACLRFEQLGEPAVYLPLAEVIDEGIELFDHLEQYELVCLDDLQAIVGKPEWEEALFH 121 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 + N + LL+ A P V LPDL SRL A V ++ D+ + + + Sbjct: 122 LFNRLRDSGRRLLIAASKSPRELPVKLPDLKSRLTMALVFQMRGLSDEDKLRALQLRASR 181 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + + + +I+ R RS+ +L++++D +L +T E L Sbjct: 182 RGLHLTDDVGHFILTRGTRSMSALFELLERLDQASLQEKRKLTIPFLKETL 232 >gi|237798977|ref|ZP_04587438.1| DNA replication initiation factor [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021831|gb|EGI01888.1| DNA replication initiation factor [Pseudomonas syringae pv. oryzae str. 1_6] Length = 234 Score = 186 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 90/231 (38%), Gaps = 15/231 (6%) Query: 24 KEEQLFFSFPRCLGISRDDLL---VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80 K QL S + + +A+ RL ++ W ++ L G G G++ L Sbjct: 2 KPIQLPLSVRLRDDATFVNYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRTHL 61 Query: 81 ANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFH 128 + + + ++ ++ + V L+D+ + + LFH Sbjct: 62 LQAACLRFEQMGEPAVYLPMAEVIDEGIELFDHLEQYELVCLDDLQAVVGKPDWEEALFH 121 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 + N + LL+ A P V LPDL SRL A V ++ D+ + + + Sbjct: 122 LFNRLRDSGRRLLIAASKSPRELPVKLPDLKSRLTMALVFQMRGLSDEDKLRALQLRASR 181 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + + + +I+ R RS+ +L++++D +L +T E L Sbjct: 182 RGLHLTDDVGHFILTRGTRSMSALFELLERLDQASLQEKRKLTIPFLKETL 232 >gi|71734306|ref|YP_275849.1| DNA replication initiation factor [Pseudomonas syringae pv. phaseolicola 1448A] gi|257485896|ref|ZP_05639937.1| DNA replication initiation factor [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289628380|ref|ZP_06461334.1| DNA replication initiation factor [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289648134|ref|ZP_06479477.1| DNA replication initiation factor [Pseudomonas syringae pv. aesculi str. 2250] gi|298487973|ref|ZP_07006012.1| Chromosomal replication initiator protein dnaA [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71554859|gb|AAZ34070.1| DnaA family protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|298157524|gb|EFH98605.1| Chromosomal replication initiator protein dnaA [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320323391|gb|EFW79479.1| DNA replication initiation factor [Pseudomonas syringae pv. glycinea str. B076] gi|320327588|gb|EFW83600.1| DNA replication initiation factor [Pseudomonas syringae pv. glycinea str. race 4] gi|330866057|gb|EGH00766.1| DNA replication initiation factor [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330876426|gb|EGH10575.1| DNA replication initiation factor [Pseudomonas syringae pv. glycinea str. race 4] gi|330889389|gb|EGH22050.1| DNA replication initiation factor [Pseudomonas syringae pv. mori str. 301020] gi|330986707|gb|EGH84810.1| DNA replication initiation factor [Pseudomonas syringae pv. lachrymans str. M301315] Length = 234 Score = 186 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 91/231 (39%), Gaps = 15/231 (6%) Query: 24 KEEQLFFSFPRCLGISRDDLL---VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80 K QL S + + +A+ RL ++ W ++ L G G G++ L Sbjct: 2 KPIQLPLSVRLRDDATFVNYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRTHL 61 Query: 81 ANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFH 128 + + L ++ ++ + V L+D+ + + LFH Sbjct: 62 LQAACLRFEQLGEPAVYLPLAEVIDEGIELFDHLEQYELVCLDDLQAIVGKPEWEEALFH 121 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 + N + LL+ A P V LPDL SRL A V ++ D+ + + + Sbjct: 122 LFNRLRDSGRRLLIAASKSPRELPVKLPDLKSRLTMALVFQMRGLSDEDKLRALQLRASR 181 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + + ++ +I+ R RS+ +L++++D +L +T E L Sbjct: 182 RGLHLTDEVGHFILTRGTRSMSALFELLERLDQASLQEKRKLTIPFLKETL 232 >gi|330960588|gb|EGH60848.1| DNA replication initiation factor [Pseudomonas syringae pv. maculicola str. ES4326] Length = 234 Score = 186 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 90/231 (38%), Gaps = 15/231 (6%) Query: 24 KEEQLFFSFPRCLGISRDDLL---VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80 K QL S + + +A+ RL ++ W ++ L G G G++ L Sbjct: 2 KPIQLPLSVRLRDDATFVNYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRTHL 61 Query: 81 ANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFH 128 + + L ++ ++ + V L+D+ + + LFH Sbjct: 62 LQAACLRFEQMGEPAVYLPLAEVIDEGIELFDHLEQYELVCLDDLQAVVGKPDWEEALFH 121 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 + N + LL+ A P V LPDL SRL A V ++ D+ + + + Sbjct: 122 LFNRLRDSGRRLLIAASKSPRELPVKLPDLKSRLTMALVFQMRGLSDEDKLRALQLRASR 181 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + + + +I+ R RS+ +L++++D +L +T E L Sbjct: 182 RGLHLTDDVGHFILTRGTRSMSALFELLERLDQASLQEKRKLTIPFLKETL 232 >gi|330953483|gb|EGH53743.1| DNA replication initiation factor [Pseudomonas syringae Cit 7] gi|330972385|gb|EGH72451.1| DNA replication initiation factor [Pseudomonas syringae pv. aceris str. M302273PT] gi|330980218|gb|EGH78371.1| DNA replication initiation factor [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 234 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 90/231 (38%), Gaps = 15/231 (6%) Query: 24 KEEQLFFSFPRCLGISRDDLL---VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80 K QL S + + +A+ RL ++ W ++ L G G G++ L Sbjct: 2 KPIQLPLSVRLRDDATFVNYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRTHL 61 Query: 81 ANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFH 128 + + L ++ ++ + V L+D+ + + LFH Sbjct: 62 LQAACLRFEQLGEPAVYLPLAEVIDEGIELFDHLEQYELVCLDDLQAIVGKPDWEEALFH 121 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 + N + LL+ A P V LPDL SRL A V ++ D+ + + + Sbjct: 122 LFNRLRDSGRRLLIAASKSPRELPVKLPDLKSRLTMALVFQMRGLSDEDKLRALQLRASR 181 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + + + +I+ R RS+ +L++++D +L +T E L Sbjct: 182 RGLHLTDDVGHFILTRGTRSMSALFELLERLDQASLQEKRKLTIPFLKETL 232 >gi|73666826|ref|YP_302842.1| chromosomal DNA replication initiator-related protein [Ehrlichia canis str. Jake] gi|72393967|gb|AAZ68244.1| chromosomal DNA replication initiator-related protein [Ehrlichia canis str. Jake] Length = 218 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 56/222 (25%), Positives = 97/222 (43%), Gaps = 8/222 (3%) Query: 26 EQLF-FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 QL F D ++ + ++ + W IL G SGSGK+ LA+IW Sbjct: 1 MQLTLFDLEDSYSYHYHDYILLEQNKATYNMLMN-QEW--NSFILYGKSGSGKTHLAHIW 57 Query: 85 SDKSRSTRFSNIAKSLDSILID---TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLL 141 + + + D ++E+ID +D N+ + H N I + LL Sbjct: 58 QKLKNAIFIDQYLINTKEDIGDIISNNNAFIIENIDNID-NELSILHYYNYIKENKKLLL 116 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 MT+ P + DL SR+ K++ PD++ L+ +++K+FAD+QI I+ K+ YI Sbjct: 117 MTSSIAPRLLNYHIKDLKSRILHTMSAKLANPDEELLKIMLIKLFADKQIHIELKVINYI 176 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 + ERS +V +D G+T ++++ Sbjct: 177 LNNTERSFQNLSNIVKCIDRNLPYYNNGVTIPFVKSIIEKND 218 >gi|68171570|ref|ZP_00544945.1| chromosomal DNA replication initiator-related protein [Ehrlichia chaffeensis str. Sapulpa] gi|88658126|ref|YP_507704.1| hypothetical protein ECH_0913 [Ehrlichia chaffeensis str. Arkansas] gi|67999011|gb|EAM85687.1| chromosomal DNA replication initiator-related protein [Ehrlichia chaffeensis str. Sapulpa] gi|88599583|gb|ABD45052.1| conserved hypothetical protein [Ehrlichia chaffeensis str. Arkansas] Length = 218 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 57/222 (25%), Positives = 96/222 (43%), Gaps = 8/222 (3%) Query: 26 EQLF-FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 QL F D ++ ++ + W IL G SGSGK+ LA+IW Sbjct: 1 MQLTLFDLEDSYSYHYHDYILLEQNRTTYNMLMN-QEW--NSFILYGKSGSGKTHLAHIW 57 Query: 85 SDKSRSTRFSNIAKSLDSILIDT---RKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLL 141 + + + DT ++E+ID +D N+ + H N I + LL Sbjct: 58 QKLKNAIFIDQHLINTKKDIGDTISNGNAFIIENIDNID-NELSMLHHYNYIKENKKLLL 116 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 MT+ P DL SR+ K++ PD++ L+ +++K+FAD+QI I+ K+ YI Sbjct: 117 MTSSIAPTLLNYHTKDLKSRILHTMSAKLANPDEELLKIMLIKLFADKQIHIELKVINYI 176 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 + ERS +V +D G+T ++++ Sbjct: 177 LNNTERSFQNLSNIVKCIDRNLPYYNNGVTIPFVKSIIEKND 218 >gi|16125955|ref|NP_420519.1| DnaA-like protein [Caulobacter crescentus CB15] gi|221234720|ref|YP_002517156.1| DnaA-like protein [Caulobacter crescentus NA1000] gi|13423125|gb|AAK23687.1| DnaA-related protein [Caulobacter crescentus CB15] gi|220963892|gb|ACL95248.1| chromosome replication regulator protein HdaA [Caulobacter crescentus NA1000] Length = 230 Score = 184 bits (469), Expect = 7e-45, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 109/228 (47%), Gaps = 6/228 (2%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 Q L R+D V + +AV +D+WP W ++LVGP+G GKS LA W Sbjct: 2 STQFKLPLASPLTHGREDFAVSPSNGEAVARLDAWPDWAEGRLVLVGPAGCGKSHLARAW 61 Query: 85 SDKSRSTRFSNIAKSLDSILIDT--RKPVLLEDIDL----LDFNDTQLFHIINSIHQYDS 138 + + + S+ + + VL+ED D +D LFHI+N Sbjct: 62 AAAAGAVVVEAANPDAASVDLSALRGRAVLVEDADRRAQGAAVSDEALFHILNMAGVDGG 121 Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198 ++L+T RT P++W + DL SRL A +V +I+ PDD LE V+ + FA + L Sbjct: 122 TVLLTGRTAPLTWSAEVADLRSRLNALSVAEIAEPDDAVLEAVLRRAFAAAWWKPEPDLY 181 Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 Y++ R+ RS A+ + A +T++LA EVL+ + + Sbjct: 182 PYLLARLPRSAAEAQAAAALLAEAAADGRRELTKALAREVLEGFEGDE 229 >gi|294012891|ref|YP_003546351.1| putative ATPase [Sphingobium japonicum UT26S] gi|292676221|dbj|BAI97739.1| putative ATPase [Sphingobium japonicum UT26S] Length = 204 Score = 184 bits (468), Expect = 9e-45, Method: Composition-based stats. Identities = 60/217 (27%), Positives = 91/217 (41%), Gaps = 22/217 (10%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 Q+ F R + D+ LV A AVR +++W +WP V +L GP SG+S L ++ Sbjct: 2 RQISLPFDRPDHATADEFLVSDANRIAVRHLENWRNWPLAVSVLSGPPLSGRSTLGRHFA 61 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTAR 145 +S T D ++ LF+ N LL+ A Sbjct: 62 AQSGGTVID----------------------DAQRQDERTLFNAWNDAQTAQRPLLLMAD 99 Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 P W V LPDL SRL AA V + PD+ +I + + L ++++R+ Sbjct: 100 APPAIWQVALPDLRSRLAAAPHVALEEPDEALARALIERSLSSAGASYAADLPEWLLRRI 159 Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ERS +D ALS G I+ ++A VL+ Sbjct: 160 ERSYAAITAATRLLDEAALSSGRKISTAMAKHVLQGA 196 >gi|327481530|gb|AEA84840.1| DNA replication initiation factor [Pseudomonas stutzeri DSM 4166] Length = 234 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 88/231 (38%), Gaps = 15/231 (6%) Query: 24 KEEQLFFSFPRCLGISRDDLL---VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80 K QL + + +A+ RL W ++ L G G G+S L Sbjct: 2 KPIQLPLGVRLRDDATFANFYPGANAAALGYVERLCSPAAGWSDELIYLWGQPGVGRSHL 61 Query: 81 ANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFH 128 + + L + ++ + V L+D+D + + + LFH Sbjct: 62 LQAACLRVEERGELAVYLPLAEVAEYGPALLDNLEQSELVCLDDLDAVAGDAIWEEALFH 121 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 + N + LL+ A P + LPDL SRL A V ++ D+ + + + Sbjct: 122 LFNRLRDAGRRLLLAADASPRELAIKLPDLQSRLSLALVFQLQQLSDEDKLRALQLRASR 181 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + + + +I+ R RS+ +L+D++D +L +T E L Sbjct: 182 RGLNLPDDVGRFILTRGSRSMNALFELLDQLDQASLQAQRKLTIPFLKETL 232 >gi|71083424|ref|YP_266143.1| DNA replication initiation ATPase [Candidatus Pelagibacter ubique HTCC1062] gi|71062537|gb|AAZ21540.1| probable ATPase involved in DNA replication initiation [Candidatus Pelagibacter ubique HTCC1062] Length = 220 Score = 183 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 58/191 (30%), Positives = 94/191 (49%), Gaps = 2/191 (1%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL F DD V + A +I+ WP W + + G SGKS L NI+ Sbjct: 6 QLLLDFNYEQNFKDDDFYVGKSNFYAFEMINKWPKWEKNFLNINGEKFSGKSHLVNIFLK 65 Query: 87 KSRSTRFSNIAKSLDSI-LIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTAR 145 K R + + ++I I + ++LED++ L+ N+ ++ + N I Q + L++T+ Sbjct: 66 KFNGIRIDVNSLNDENIKSIKPYQNIVLEDLN-LNINEKLIYSLFNIIDQDNKFLIVTSM 124 Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 L DL SR K I PDD+ + +I+K +DRQI +DKKL +I++R+ Sbjct: 125 KPISEINFKLEDLRSRTKNCLFANIQNPDDELMFALILKNLSDRQITLDKKLINFIIKRI 184 Query: 206 ERSLVFAEKLV 216 ERS + + Sbjct: 185 ERSYGKIFEFI 195 >gi|91762153|ref|ZP_01264118.1| probable ATPase involved in DNA replication initiation [Candidatus Pelagibacter ubique HTCC1002] gi|91717955|gb|EAS84605.1| probable ATPase involved in DNA replication initiation [Candidatus Pelagibacter ubique HTCC1002] Length = 224 Score = 183 bits (466), Expect = 2e-44, Method: Composition-based stats. Identities = 58/191 (30%), Positives = 94/191 (49%), Gaps = 2/191 (1%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL F DD V + A +I+ WP W + + G SGKS L NI+ Sbjct: 10 QLLLDFNYEQNFKDDDFYVGKSNFYAFEMINKWPKWEKNFLNINGEKFSGKSHLVNIFLK 69 Query: 87 KSRSTRFSNIAKSLDSI-LIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTAR 145 K R + + ++I I + ++LED++ L+ N+ ++ + N I Q + L++T+ Sbjct: 70 KFNGIRIDVNSLNDENIKSIKPYQNIVLEDLN-LNINEKLIYSLFNIIDQDNKFLIVTSM 128 Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 L DL SR K I PDD+ + +I+K +DRQI +DKKL +I++R+ Sbjct: 129 KPISEINFELEDLRSRTKNCLFANIQNPDDELMFALILKNLSDRQITLDKKLINFIIKRI 188 Query: 206 ERSLVFAEKLV 216 ERS + + Sbjct: 189 ERSYGKIFEFI 199 >gi|170720412|ref|YP_001748100.1| DNA replication initiation factor [Pseudomonas putida W619] gi|169758415|gb|ACA71731.1| DnaA regulatory inactivator Hda [Pseudomonas putida W619] Length = 235 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 93/232 (40%), Gaps = 15/232 (6%) Query: 23 NKEEQLFFSFPRCLGISRDDLL---VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSC 79 QL + + +A+ RL ++ W ++ L G G G+S Sbjct: 2 KPPIQLPLGVRLRDDATFINYYPGANAAALGYVERLCEADAGWTESLIYLWGKQGVGRSH 61 Query: 80 LANI----WSDKSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFN---DTQLF 127 L + + + + +A+ L+ + + + V ++D+ ++ + +F Sbjct: 62 LLQAATHRFQQRGEAAVYLPLAQLLERGIGLLDYLAQYELVCIDDLHVIAGKAEWEEAMF 121 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H+ N + LL+ A P + LPDL SRL A V ++ D+ + + + Sbjct: 122 HLFNRLRDSGRRLLLAASASPRELPIRLPDLKSRLTLALVFQMRGLSDEDKLRALQLRAS 181 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + + ++ +I+ R RS+ L++++D +L +T E L Sbjct: 182 RRGLHLTDEVGHFILTRGTRSMSALFDLLERLDQASLQAQRKLTIPFLKETL 233 >gi|87198923|ref|YP_496180.1| ATPase [Novosphingobium aromaticivorans DSM 12444] gi|87134604|gb|ABD25346.1| ATPase [Novosphingobium aromaticivorans DSM 12444] Length = 204 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 58/216 (26%), Positives = 99/216 (45%), Gaps = 22/216 (10%) Query: 30 FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR 89 + P + +++ ++ A+ + S SWP R IL GP SGKS LA +++ Sbjct: 5 IALPLVTARGSETVIMGPSLVPAINALQSADSWPFRTAILAGPPRSGKSLLARWFAE--- 61 Query: 90 STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPV 149 + +++ D L ++ +FH N LL+ P Sbjct: 62 -----------------SGAGDVVDGADSLPEDE--VFHRWNRAQAEGRPLLLVCDRAPG 102 Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209 W + LPDL SRL AA +++I PDD+ + +I++ R + I + AY++ R+ERS Sbjct: 103 QWKIALPDLASRLGAALLIEIGPPDDELIAGLIMEHSMRRGLVIGDAVLAYLLPRVERSH 162 Query: 210 VFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 E L++ +D L+L R +T SL + + E Sbjct: 163 AGIELLIETLDRLSLERKSPVTISLVRDAIAERTGA 198 >gi|114328698|ref|YP_745855.1| dnaA-like protein [Granulibacter bethesdensis CGDNIH1] gi|114316872|gb|ABI62932.1| dnaA-related protein [Granulibacter bethesdensis CGDNIH1] Length = 246 Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats. Identities = 61/224 (27%), Positives = 106/224 (47%), Gaps = 3/224 (1%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 + QL F + L + A + WP + L G G+GK+ L + Sbjct: 2 SAALQLGLPFAYEPAYRPSNFLEAPSNRAARAWLARTSEWPQGRLGLFGDEGTGKTHLLS 61 Query: 83 IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLM 142 IW+D + R SL + PV ++D D ++ L H+IN+ + +L+ Sbjct: 62 IWADLQEAER--RPGPSLRGLPRAPLAPVAVDDADATP-DEAALLHLINAAAEAGVPILL 118 Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 +R P W V LPDL SRL+A + V I PDD L ++ ++ +RQ+ + L ++++ Sbjct: 119 ASRLPPARWRVTLPDLASRLRATSSVGILPPDDALLRALLERLLTERQLSVPPSLQSWLL 178 Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 R+ R+ ++ ++D AL+ G +T+ LAA +L + D Sbjct: 179 LRLPRTAWAVREVAARLDRAALAEGGRVTKILAARILNGLCESD 222 >gi|307293975|ref|ZP_07573819.1| putative ATPase [Sphingobium chlorophenolicum L-1] gi|306880126|gb|EFN11343.1| putative ATPase [Sphingobium chlorophenolicum L-1] Length = 204 Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats. Identities = 59/217 (27%), Positives = 91/217 (41%), Gaps = 22/217 (10%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 Q+ F R D+ LV A AVR +++W +WP V +L GP SG+S L ++ Sbjct: 2 RQISLPFDRPDQAKADEFLVSEANRIAVRHLENWRNWPLAVSLLSGPPLSGRSTLGRHFA 61 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTAR 145 +S T D ++ LF+ N LL+ A Sbjct: 62 AQSGGTVID----------------------DAQRQDERTLFNAWNDAQTAQRPLLLIAD 99 Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 P W V LPDL SRL AA V + PD+ +I + + L ++++R+ Sbjct: 100 APPAIWHVALPDLRSRLAAAPHVALHQPDEALARALIERSLSSTGASYAADLPEWLLRRI 159 Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ERS +D +LS G I+ ++A VL++ Sbjct: 160 ERSYAAIAAATRLLDEASLSSGRKISTAMAKHVLQDA 196 >gi|298505194|gb|ADI83917.1| DnaA regulatory inactivator Hda [Geobacter sulfurreducens KN400] Length = 242 Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats. Identities = 54/240 (22%), Positives = 90/240 (37%), Gaps = 25/240 (10%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDS--WPSWPSRVVILVGPSGSGKSCLA-- 81 QL F FP S D+ ++ + E A R S ++ L GPSGSGK+ L Sbjct: 1 MQLVFDFPVTPKYSFDNFVICAGNETACRFARRLTDESGSENLLYLHGPSGSGKTHLLMA 60 Query: 82 --NIWSDKSR----------------STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123 ++ + + S + +L++D+ L+ Sbjct: 61 MGACFAGRVGLRAVPCISFKDVDEIYHGEYPAEEVSRLAERFRGAPALLVDDLHLIPDQQ 120 Query: 124 T---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 + +L+ + N +Q + +T P L SRL V K + DDD + Sbjct: 121 SVRVELWQLFNDFYQAGRPIAITGLNPPNELPTLDGHLTSRLLWGLVAKTDISDDDSRRR 180 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 ++ K+ DRQI + Y++ + R + +D + A S IT LA E L Sbjct: 181 IMQKLADDRQIILPADAVDYLLVHVRRDVPSLVAALDAITRYAFSAKRKITMRLAREALA 240 >gi|104780562|ref|YP_607060.1| DNA replication initiation factor [Pseudomonas entomophila L48] gi|95109549|emb|CAK14250.1| conserved hypothetical protein; DnaA family protein [Pseudomonas entomophila L48] Length = 261 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 92/235 (39%), Gaps = 15/235 (6%) Query: 20 QPKNKEEQLFFSFPRCLGISRDDLL---VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSG 76 K QL + + +A+ RL ++ W ++ L G G G Sbjct: 25 PASMKPIQLPLGVRLRDDATFINYYPGANAAALGYVERLCEADAGWTESLIYLWGKQGVG 84 Query: 77 KSCLANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DT 124 ++ L + + + + L +L ++ + V ++D+ ++ + Sbjct: 85 RTHLLQAATHRFQQLGEPAVYLPLAQLLERGVELLDHLEQYELVCIDDLHVIAGKADWEE 144 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 +FH+ N + LL+ A + P + L DL SRL A + ++ D+ + + Sbjct: 145 AMFHLFNRLRDSGRRLLLAASSSPRELPIKLADLKSRLTLALIFQMRGMSDEDKLRALQL 204 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + R + + ++ +I+ R RS+ L++++D +L +T E L Sbjct: 205 RASRRGLHLTDEVGHFILTRGTRSMSALFDLLERLDQASLQAQRKLTIPFLKETL 259 >gi|229591907|ref|YP_002874026.1| DNA replication initiation factor [Pseudomonas fluorescens SBW25] gi|229363773|emb|CAY51191.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25] Length = 234 Score = 182 bits (462), Expect = 5e-44, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 89/231 (38%), Gaps = 15/231 (6%) Query: 24 KEEQLFFSFPRCLGISRDDLL---VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80 K QL + + +A+ RL ++ W ++ L G G G++ L Sbjct: 2 KPIQLPLGVRLRDDATFINYYPGANAAALGYVERLCEADAGWTESLIYLWGKHGVGRTHL 61 Query: 81 ANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFH 128 + + L ++ ++ + V L+D+ + + LFH Sbjct: 62 LQAACLRFEQMGEPAVYLPLAELMDRGIGIFDHLEQYELVCLDDLQAIAGKADWEEALFH 121 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 + N + LL+ A + P + L DL SRL A + ++ D+ + + + Sbjct: 122 LFNRLRDSGRRLLIAASSSPRELPIKLADLKSRLTLALIFQMRPLSDEDKLRALQLRASR 181 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + + ++ +I+ R RS+ L++++D +L +T E L Sbjct: 182 RGLHLTDEVGHFILTRGTRSMSALFDLLEQLDQASLQAQRKLTIPFLKETL 232 >gi|330811200|ref|YP_004355662.1| DNA replication initiation factor [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379308|gb|AEA70658.1| Putative DNA replication initiation factor [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 234 Score = 182 bits (462), Expect = 5e-44, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 90/231 (38%), Gaps = 15/231 (6%) Query: 24 KEEQLFFSFPRCLGISRDDLL---VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80 K QL + + +A+ RL ++ W ++ L G G G++ L Sbjct: 2 KPIQLPLGVRLRDDATFINYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRTHL 61 Query: 81 ANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFH 128 + + L +L ++ + V L+D+ + + LFH Sbjct: 62 LQAACLRFEQLGEPAVYLPLAELLDRGVEILDNLEQYELVCLDDLQAVAGKADWEEALFH 121 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 + N + LL+ A T P V L DL SRL A + ++ D+ + + + Sbjct: 122 LFNRLRDSGRRLLIAASTSPRELPVKLADLKSRLTLALIFQMRPLSDEDKLRALQLRASR 181 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + + ++ +I+ R RS+ +L++++D +L +T E L Sbjct: 182 RGLHLTDEVGHFILTRGTRSMSALFELLERLDQASLQAQRKLTIPFLKETL 232 >gi|70731783|ref|YP_261525.1| DNA replication initiation factor [Pseudomonas fluorescens Pf-5] gi|68346082|gb|AAY93688.1| DnaA family protein [Pseudomonas fluorescens Pf-5] Length = 234 Score = 182 bits (462), Expect = 5e-44, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 90/231 (38%), Gaps = 15/231 (6%) Query: 24 KEEQLFFSFPRCLGISRDDLL---VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80 K QL + + +A+ RL ++ W ++ L G G G++ L Sbjct: 2 KPIQLPLGVRLRDDATFINYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRTHL 61 Query: 81 ANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFH 128 + + L +L ++ + V L+D+ + + LFH Sbjct: 62 LQAACLRFEQLGEPAVYLPLAELLDRGIEILDNLEQYELVCLDDLQAVAGKADWEEALFH 121 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 + N + LL+ A T P V L DL SRL A + ++ D+ + + + Sbjct: 122 LFNRLRDSGRRLLIAASTSPRELPVKLADLKSRLTLALIFQMRPLSDEDKLRALQLRASR 181 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + + ++ +I+ R RS+ +L++++D +L +T E L Sbjct: 182 RGLHLTDEVGHFILTRGTRSMSALFELLERLDQASLQAQRKLTIPFLKETL 232 >gi|325274455|ref|ZP_08140535.1| DNA replication initiation factor [Pseudomonas sp. TJI-51] gi|324100409|gb|EGB98175.1| DNA replication initiation factor [Pseudomonas sp. TJI-51] Length = 235 Score = 181 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 45/232 (19%), Positives = 90/232 (38%), Gaps = 15/232 (6%) Query: 23 NKEEQLFFSFPRCLGISRDDLL---VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSC 79 QL + + +A+ RL ++ W ++ L G G G+S Sbjct: 2 KPPIQLPLGVRLRDDATFINYYPGANAAALGYVERLCEADAGWTESLIYLWGKQGVGRSH 61 Query: 80 LANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLF 127 L + + + + L +L + + V ++D+ ++ + +F Sbjct: 62 LLQAATHRFQQRGEPAVYLPLAQLLERGVGLLDYLAQYELVCIDDLHVIAGKPDWEEAMF 121 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H+ N + LL+ A P V LPDL SRL A V ++ D+ + + + Sbjct: 122 HLFNRLRDSGRRLLLAASASPRELPVKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRAS 181 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + + ++ +I+ R RS+ L++++D +L +T E L Sbjct: 182 RRGLHLTDEVGHFILTRGARSMSALFDLLERLDQASLQAQRKLTIPFLKETL 233 >gi|312962335|ref|ZP_07776826.1| DnaA family protein [Pseudomonas fluorescens WH6] gi|311283262|gb|EFQ61852.1| DnaA family protein [Pseudomonas fluorescens WH6] Length = 234 Score = 181 bits (460), Expect = 7e-44, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 89/231 (38%), Gaps = 15/231 (6%) Query: 24 KEEQLFFSFPRCLGISRDDLL---VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80 K QL + + +A+ RL ++ W ++ L G G G++ L Sbjct: 2 KPIQLPLGVRLRDDATFINYYPGANAAALGYVERLCEADAGWTESLIYLWGKQGVGRTHL 61 Query: 81 ANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFH 128 + + L ++ ++ + V L+D+ + + LFH Sbjct: 62 LQAACLRFEQMGEPAVYLPLAELMDRGIGIFDHLEQYELVCLDDLQAIAGKADWEEALFH 121 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 + N + LL+ A T P + L DL SRL A + ++ D+ + + + Sbjct: 122 LFNRLRDSGRRLLIAAATSPRELPIKLADLKSRLTLALIFQMRPLSDEDKLRALQLRASR 181 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + + ++ +I+ R RS+ L++++D +L +T E L Sbjct: 182 RGLHLTDEVGHFILTRGTRSMSALFDLLEQLDQASLQAQRKLTIPFLKETL 232 >gi|167032278|ref|YP_001667509.1| DNA replication initiation factor [Pseudomonas putida GB-1] gi|166858766|gb|ABY97173.1| DnaA regulatory inactivator Hda [Pseudomonas putida GB-1] Length = 235 Score = 181 bits (460), Expect = 9e-44, Method: Composition-based stats. Identities = 45/232 (19%), Positives = 90/232 (38%), Gaps = 15/232 (6%) Query: 23 NKEEQLFFSFPRCLGISRDDLL---VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSC 79 QL + + +A+ RL ++ W ++ L G G G+S Sbjct: 2 KPPIQLPLGVRLRDDATFINYYPGANAAALGYVERLCEADAGWTESLIYLWGKQGVGRSH 61 Query: 80 LANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLF 127 L + + + + L +L + + V ++D+ ++ + +F Sbjct: 62 LLQAATHRFQQRGEPAVYLPLAQLLDRGVGLLDYLAQYELVCIDDLHVIAGKADWEEAMF 121 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H+ N + LL+ A P V LPDL SRL A V ++ D+ + + + Sbjct: 122 HLFNRLRDSGRRLLLAASASPRELPVKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRAS 181 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + + ++ +I+ R RS+ L++++D +L +T E L Sbjct: 182 RRGLHLTDEVGHFILTRGARSMSALFDLLERLDQASLQAQRKLTIPFLKETL 233 >gi|49081928|gb|AAT50364.1| PA0947 [synthetic construct] Length = 235 Score = 181 bits (459), Expect = 9e-44, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 91/231 (39%), Gaps = 15/231 (6%) Query: 24 KEEQLFFSFPRCLGISRDDLL---VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80 K QL S + + +A+ RL ++ W ++ L G G G+S L Sbjct: 2 KPIQLPLSVRLRDDATFANYYPGANAAALGYVERLCEAEAGWAESLIYLWGHDGVGRSHL 61 Query: 81 ANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFH 128 + I + + ++ + V ++D+D+L + LFH Sbjct: 62 LQAACLRFEQFEERTIYLPMADPVQYGPEIFDDLEQCELVCIDDLDVLVGKREWEEGLFH 121 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 + N + LL+ A P V LPDL SRL A + ++ D+ + + + Sbjct: 122 LFNRLRDTGRRLLLAASKSPRELQVKLPDLKSRLTMALIFQLHGLSDEDKLRALQLRASR 181 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + + ++ +I+ R RS+ L++++D +L +T E L Sbjct: 182 RGLHLTDEVGRFILNRGSRSMNSLFDLLEQLDRASLQAQRKLTIPFLKETL 232 >gi|58616915|ref|YP_196114.1| hypothetical protein ERGA_CDS_01880 [Ehrlichia ruminantium str. Gardel] gi|58416527|emb|CAI27640.1| Conserved hypothetical protein [Ehrlichia ruminantium str. Gardel] Length = 230 Score = 181 bits (459), Expect = 9e-44, Method: Composition-based stats. Identities = 54/222 (24%), Positives = 99/222 (44%), Gaps = 8/222 (3%) Query: 26 EQLF-FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 QL F + D ++ + ++ + W S IL G SGSGK+ LA+IW Sbjct: 1 MQLTLFDLEESYSYNYHDYILLEKNHETYNMLMN-QQWSS--FILYGKSGSGKTHLAHIW 57 Query: 85 SDKSRSTRFSNIAKSLD---SILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLL 141 + ++ + +I + ++E+I+ + N++ H N I + LL Sbjct: 58 QKLKNAIFINHDLINTGKGIENVISSSNAFIIENIENIS-NESSTLHYYNYIKENKKILL 116 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 MT+ P + DL SR+ K++ PD++ L+ +++K+F DRQI I+ K+ YI Sbjct: 117 MTSSIAPRFLNYKIKDLKSRMLYTMNAKLANPDEELLKIMLIKLFVDRQIHIELKVINYI 176 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 + ERS +V + G+T ++ + + Sbjct: 177 LNNTERSFQSLSNIVKCIYRELPYYNNGVTIPFVKSIIGKNE 218 >gi|57238925|ref|YP_180061.1| hypothetical protein Erum1920 [Ehrlichia ruminantium str. Welgevonden] gi|58578857|ref|YP_197069.1| hypothetical protein ERWE_CDS_01930 [Ehrlichia ruminantium str. Welgevonden] gi|57161004|emb|CAH57910.1| conserved hypothetical protein [Ehrlichia ruminantium str. Welgevonden] gi|58417483|emb|CAI26687.1| Conserved hypothetical protein [Ehrlichia ruminantium str. Welgevonden] Length = 230 Score = 181 bits (459), Expect = 9e-44, Method: Composition-based stats. Identities = 54/222 (24%), Positives = 99/222 (44%), Gaps = 8/222 (3%) Query: 26 EQLF-FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 QL F + D ++ + ++ + W S IL G SGSGK+ LA+IW Sbjct: 1 MQLTLFDLEESYSYNYHDYILLEKNHETYNMLMN-QQWSS--FILYGKSGSGKTHLAHIW 57 Query: 85 SDKSRSTRFSNIAKSLD---SILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLL 141 + ++ + +I + ++E+I+ + N++ H N I + LL Sbjct: 58 QKLKNAIFINHDLINTGKGIENVISSSNAFIIENIENIS-NESSTLHYYNYIKENKKILL 116 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 MT+ P + DL SR+ K++ PD++ L+ +++K+F DRQI I+ K+ YI Sbjct: 117 MTSSIAPRFLNYKIKDLKSRMLYTMNAKLANPDEELLKIMLIKLFVDRQIHIELKVINYI 176 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 + ERS +V + G+T ++ + + Sbjct: 177 LNNTERSFQSLSNIVKCIYRELPYYNNGVTIPFVKSIIGKNE 218 >gi|26988400|ref|NP_743825.1| DNA replication initiation factor [Pseudomonas putida KT2440] gi|148549256|ref|YP_001269358.1| DNA replication initiation factor [Pseudomonas putida F1] gi|24983155|gb|AAN67289.1|AE016355_7 DnaA family protein [Pseudomonas putida KT2440] gi|148513314|gb|ABQ80174.1| regulatory inactivation of DnaA Hda protein [Pseudomonas putida F1] gi|313500166|gb|ADR61532.1| DNA replication initiation factor [Pseudomonas putida BIRD-1] Length = 235 Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 90/232 (38%), Gaps = 15/232 (6%) Query: 23 NKEEQLFFSFPRCLGISRDDLL---VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSC 79 QL + + +A+ RL ++ W ++ L G G G+S Sbjct: 2 KPPIQLPLGVRLRDDATFINYYPGANAAALGYVERLCEADAGWTESLIYLWGKQGVGRSH 61 Query: 80 LANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLF 127 L + + + + L +L + + V ++D+ ++ + +F Sbjct: 62 LLQAATHRFQQRGEPAVYLPLAQLLDRGVELLDYLAQYELVCIDDLHVIAGKADWEEAMF 121 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H+ N + LL+ A P + LPDL SRL A V ++ D+ + + + Sbjct: 122 HLFNRLRDSGRRLLLAASASPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRAS 181 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + + ++ +I+ R RS+ L++++D +L +T E L Sbjct: 182 RRGLHLTDEVGHFILTRGARSMSALFDLLERLDQASLQAQRKLTIPFLKETL 233 >gi|77457863|ref|YP_347368.1| DNA replication initiation factor [Pseudomonas fluorescens Pf0-1] gi|77381866|gb|ABA73379.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1] Length = 234 Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 90/231 (38%), Gaps = 15/231 (6%) Query: 24 KEEQLFFSFPRCLGISRDDLL---VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80 K QL + + +A+ RL ++ W ++ L G G G++ L Sbjct: 2 KPIQLPLGVRLRDDATFINYYPGANAAALGYVERLCEADAGWTESLIYLWGKHGVGRTHL 61 Query: 81 ANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFH 128 + + L ++ ++ + V L+D+ ++ + +FH Sbjct: 62 LQAACLRFEQMGEPAVYLPLAELMDRGIEILDNLEQYELVCLDDLQVIAGKADWEEAMFH 121 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 + N + LL+ A T P + L DL SRL A + ++ D+ + + + Sbjct: 122 LFNRLRDSGRRLLIAASTSPRELPIKLADLKSRLTLALIFQMRPLSDEDKLRALQLRASR 181 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + + ++ +I+ R RS+ L++++D +L +T E L Sbjct: 182 RGLHLTDEVGHFILTRGTRSMSALFDLLEQLDQASLQAQRKLTIPFLKETL 232 >gi|300114434|ref|YP_003761009.1| DnaA regulatory inactivator Hda [Nitrosococcus watsonii C-113] gi|299540371|gb|ADJ28688.1| DnaA regulatory inactivator Hda [Nitrosococcus watsonii C-113] Length = 232 Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 92/227 (40%), Gaps = 13/227 (5%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP-SRVVILVGPSGSGKSCLA--- 81 +QL S ++ + +A + + ++ R + L GPSG GK+ L Sbjct: 4 QQLPLPIGESGAPSFENYYLAAANREPIAAVERCGQGKGERFLCLWGPSGVGKTHLLLAA 63 Query: 82 -NIWSDKSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDF---NDTQLFHIINS 132 I + +S + + + ++ V ++DID + + L H+ N Sbjct: 64 CQIAAQESERVAYVPLKRVGIMAPEILGGLEAAAFVAIDDIDHVAGYRHWEESLLHLYNL 123 Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 + + LL+ + P + LPDL SRL ++ DD + A R + Sbjct: 124 LQEEQGRLLLASTDKPSTLHWLLPDLRSRLGWGVGYQLQPLDDHQKHAALQFQAAKRGLE 183 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + ++A ++++ ER + ++ +++ +++ +T +VL Sbjct: 184 LPDEVAGFLLRHSERDMHSLSSILAQLERASMAAQRRLTVPFVRQVL 230 >gi|152987343|ref|YP_001349911.1| DNA replication initiation factor [Pseudomonas aeruginosa PA7] gi|150962501|gb|ABR84526.1| DnaA regulatory inactivator Hda [Pseudomonas aeruginosa PA7] Length = 234 Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 92/231 (39%), Gaps = 15/231 (6%) Query: 24 KEEQLFFSFPRCLGISRDDLL---VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80 K QL S + + +A+ RL ++ W ++ L G G G+S L Sbjct: 2 KPIQLPLSVRLRDDATFANYYPGANAAALGYVERLCEAEAGWAESLIYLWGHDGVGRSHL 61 Query: 81 ANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFH 128 + I + ++ ++ + V ++D+D+L + LFH Sbjct: 62 LQAACLRFEQFEERTIYLPMADLVQYGPEIFDDLEQCELVCIDDLDVLVGKRNWEEGLFH 121 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 + N + LL+ A P V LPDL SRL A + ++ D+ + + + Sbjct: 122 LFNRLRDTGRRLLLAASKSPRELQVKLPDLKSRLTMALIFQLHGLSDEDKLRALQLRASR 181 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + + ++ +I+ R RS+ L++++D +L +T E L Sbjct: 182 RGLHLTDEVGRFILNRGSRSMNSLFDLLEQLDRASLQAQRKLTIPFLKETL 232 >gi|15596144|ref|NP_249638.1| DNA replication initiation factor [Pseudomonas aeruginosa PAO1] gi|116048871|ref|YP_792328.1| DNA replication initiation factor [Pseudomonas aeruginosa UCBPP-PA14] gi|218893083|ref|YP_002441952.1| DNA replication initiation factor [Pseudomonas aeruginosa LESB58] gi|254239298|ref|ZP_04932621.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|254245231|ref|ZP_04938553.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|296390698|ref|ZP_06880173.1| DNA replication initiation factor [Pseudomonas aeruginosa PAb1] gi|9946853|gb|AAG04336.1|AE004529_2 conserved hypothetical protein [Pseudomonas aeruginosa PAO1] gi|115584092|gb|ABJ10107.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14] gi|126171229|gb|EAZ56740.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|126198609|gb|EAZ62672.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|218773311|emb|CAW29123.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58] Length = 234 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 92/231 (39%), Gaps = 15/231 (6%) Query: 24 KEEQLFFSFPRCLGISRDDLL---VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80 K QL S + + +A+ RL ++ W ++ L G G G+S L Sbjct: 2 KPIQLPLSVRLRDDATFANYYPGANAAALGYVERLCEAEAGWAESLIYLWGHDGVGRSHL 61 Query: 81 ANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFH 128 + I + ++ ++ + V ++D+D+L + LFH Sbjct: 62 LQAACLRFEQFEERTIYLPMADLVQYGPEIFDDLEQCELVCIDDLDVLVGKREWEEGLFH 121 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 + N + LL+ A P V LPDL SRL A + ++ D+ + + + Sbjct: 122 LFNRLRDTGRRLLLAASKSPRELQVKLPDLKSRLTMALIFQLHGLSDEDKLRALQLRASR 181 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + + ++ +I+ R RS+ L++++D +L +T E L Sbjct: 182 RGLHLTDEVGRFILNRGSRSMNSLFDLLEQLDRASLQAQRKLTIPFLKETL 232 >gi|330902626|gb|EGH33641.1| DNA replication initiation factor [Pseudomonas syringae pv. japonica str. M301072PT] Length = 207 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 43/205 (20%), Positives = 84/205 (40%), Gaps = 12/205 (5%) Query: 47 SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL-- 104 +A+ RL ++ W ++ L G G G++ L + + L ++ Sbjct: 1 AAVGYVERLCEADAGWAESLIYLWGKDGVGRTHLLQAACLRFEQLGEPAVYLPLAEVIDE 60 Query: 105 -------IDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 ++ + V L+D+ + + LFH+ N + LL+ A P V Sbjct: 61 GIELFDHLEQYELVCLDDLQAIVGKPDWEEALFHLFNRLRDSGRRLLIAASKSPRELPVK 120 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 LPDL SRL A V ++ D+ + + + R + + + +I+ R RS+ + Sbjct: 121 LPDLKSRLTMALVFQMRGLSDEDKLRALQLRASRRGLHLTDDVGHFILTRGTRSMSALFE 180 Query: 215 LVDKMDNLALSRGMGITRSLAAEVL 239 L++++D +L +T E L Sbjct: 181 LLERLDQASLQEKRKLTIPFLKETL 205 >gi|56551607|ref|YP_162446.1| DNA replication initiation ATPase [Zymomonas mobilis subsp. mobilis ZM4] gi|241761267|ref|ZP_04759355.1| ATPase involved in DNA replication initiation [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260752800|ref|YP_003225693.1| chromosomal replication initiator, DnaA [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|56543181|gb|AAV89335.1| ATPase involved in DNA replication initiation [Zymomonas mobilis subsp. mobilis ZM4] gi|241374174|gb|EER63671.1| ATPase involved in DNA replication initiation [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552163|gb|ACV75109.1| chromosomal replication initiator, DnaA [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 214 Score = 179 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 48/223 (21%), Positives = 88/223 (39%), Gaps = 22/223 (9%) Query: 24 KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI 83 Q+ + D +V A AV + W WP + +L G SG+S L + Sbjct: 6 PVTQMALPLIWPEPENDGDFIVSDANNIAVEQLRLWQKWPVKSALLTGMRKSGRSLLGRL 65 Query: 84 WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMT 143 + ++ N + ++ +FH N + LL+ Sbjct: 66 FVARTGGELIDNAERR----------------------SEEFIFHAWNRAERLKRPLLVI 103 Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203 A P W + LPDL SR+ A+ + I PDD + +I + R + + ++ ++ Sbjct: 104 ADQPPPLWKIRLPDLRSRMIASPHLVIKAPDDSLIAALIERRLGRRGLPVSTEILEWVTP 163 Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 R+E + + +DK+D AL R IT ++ ++ + D Sbjct: 164 RIEHNYIAVLDWIDKLDQAALKRRGPITLNMVRAIMAGEEIPD 206 >gi|332184913|ref|ZP_08386662.1| hypothetical protein SUS17_294 [Sphingomonas sp. S17] gi|332014637|gb|EGI56693.1| hypothetical protein SUS17_294 [Sphingomonas sp. S17] Length = 202 Score = 178 bits (451), Expect = 9e-43, Method: Composition-based stats. Identities = 59/212 (27%), Positives = 98/212 (46%), Gaps = 24/212 (11%) Query: 28 LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87 L +P D L+ + A R+++ W SWP+ IL GP SG+S LA I++ + Sbjct: 6 LPLQWPADPR--SDAFLLTDSNRLAARMLEQWESWPTMAAILTGPRKSGRSLLARIFAAR 63 Query: 88 SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTF 147 S T +++D + + + Q+FH N+ LL+ A Sbjct: 64 SNGT--------------------IIDDAERV--PEVQIFHAWNTAQAERRPLLIVADAP 101 Query: 148 PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER 207 P W V LPDL SRL +++ +I PDD+ + + +F R + L ++ R+ER Sbjct: 102 PPRWSVKLPDLRSRLANSSLAEIGAPDDELVAALFEHLFERRGLDARPDLIEWLTARVER 161 Query: 208 SLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 S + + VD +D A+ R ++ +LA L Sbjct: 162 SHLSVIRAVDMLDQGAMERRARLSIALARSTL 193 >gi|254786961|ref|YP_003074390.1| DnaA regulatory inactivator Hda [Teredinibacter turnerae T7901] gi|237687481|gb|ACR14745.1| DnaA regulatory inactivator Hda [Teredinibacter turnerae T7901] Length = 236 Score = 177 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 95/232 (40%), Gaps = 15/232 (6%) Query: 24 KEEQLFFSFPRCLGISRDDLL-VHSAIEQAVRLIDSWPSWPS-RVVILVGPSGSGKSCLA 81 + +QL + + L V S QAV ++ S S + G G+G S L Sbjct: 4 QPQQLSLGIALHEEATFANYLAVGSGNRQAVDALEKVASGASLENTFVWGAHGTGLSHLL 63 Query: 82 NIWSDKSRSTRFSNIAKSLDSILIDTRKPVL--LEDIDLLDFN-----------DTQLFH 128 ++ S + + + LED+DL+ + + LFH Sbjct: 64 QAVCHQASDCGRSLQYFPMADVRGYAPAALCEGLEDLDLVCLDGIEHICGSREWEQSLFH 123 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 + N + +L+ ++ P + + LPDL SRL + + + DD + + + + Sbjct: 124 LFNRMRDAGKTLVFSSHVSPAALPIVLPDLKSRLMSCIIYHLESLTDDAKKAALQQRAHE 183 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 R + +++A++I+ R R +L+DK+D+ +L +T VL+ Sbjct: 184 RGFDMPEEVASFILNRASRDTAELFELLDKLDDASLQAQRKLTIPFVKSVLE 235 >gi|146283163|ref|YP_001173316.1| DNA replication initiation factor [Pseudomonas stutzeri A1501] gi|145571368|gb|ABP80474.1| DnaA family protein [Pseudomonas stutzeri A1501] Length = 223 Score = 177 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 83/206 (40%), Gaps = 12/206 (5%) Query: 46 HSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL- 104 +A+ RL W ++ L G G G+S L + + L + Sbjct: 16 AAALGYVERLCSPAAGWSDELIYLWGQRGVGRSHLLQAACLRVEERGELAVYLPLAEVAE 75 Query: 105 --------IDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 ++ + V L+D+D + + + LFH+ N + LL+ A P + Sbjct: 76 YGPALLDNLEQSELVCLDDLDAVAGDAIWEEALFHLFNRLRDAGRRLLLAADASPRELAI 135 Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213 LPDL SRL A V ++ D+ + + + R + + + +I+ R RS+ Sbjct: 136 KLPDLQSRLSLALVFQLQQLSDEDKLRALQLRASRRGLNLPDDVGRFILTRGSRSMNALF 195 Query: 214 KLVDKMDNLALSRGMGITRSLAAEVL 239 +L+D++D +L +T E L Sbjct: 196 ELLDQLDQASLQAQRKLTIPFLKETL 221 >gi|88608364|ref|YP_506085.1| hypothetical protein NSE_0190 [Neorickettsia sennetsu str. Miyayama] gi|88600533|gb|ABD46001.1| conserved hypothetical protein [Neorickettsia sennetsu str. Miyayama] Length = 223 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 59/213 (27%), Positives = 96/213 (45%), Gaps = 10/213 (4%) Query: 26 EQLFF--SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI 83 QL + R S D V + + + P + + ++L G S SGK+ + + Sbjct: 2 RQLILIDNQIRQNTYSAADYFVSESNLSIYKSLVETP-FSQKPIVLKGHSKSGKTHIGRV 60 Query: 84 WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT--QLFHIINSIHQYDSSLL 141 W+ K + SN+ + + ++DID L + L HI N + LL Sbjct: 61 WASKHGADILSNLTEQTHFAI---HNHCFIDDIDKLTTQEEIEALLHIYNGAIESGKILL 117 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 MT R+ + LPDL SRL+++ I PDD+ L VI K F Q + +K+ + Sbjct: 118 MTTRSL--DFSDVLPDLSSRLRSSITYSIPPPDDELLRVVIRKQFYLYQTRVSEKIVDLV 175 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234 +QR++RSL V ++ AL +G I+ L Sbjct: 176 LQRVDRSLEAVVDFVALLNREALHKGKPISARL 208 >gi|77164694|ref|YP_343219.1| chromosomal replication initiator protein DnaA [Nitrosococcus oceani ATCC 19707] gi|254434656|ref|ZP_05048164.1| chromosomal replication initiator protein DnaA [Nitrosococcus oceani AFC27] gi|76883008|gb|ABA57689.1| regulatory inactivation of DnaA Hda protein [Nitrosococcus oceani ATCC 19707] gi|207090989|gb|EDZ68260.1| chromosomal replication initiator protein DnaA [Nitrosococcus oceani AFC27] Length = 232 Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 94/228 (41%), Gaps = 13/228 (5%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS-RVVILVGPSGSGKSCLA--- 81 +QL S ++ + +A ++V ++ R + L GPSG GK+ L Sbjct: 4 QQLPLPIGDSGAPSFENYYLAAANRESVAAVERCGQGKGDRFLCLRGPSGVGKTHLLLAA 63 Query: 82 -NIWSDKSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDF---NDTQLFHIINS 132 I + K + + +++ ++ V ++DID + + L H+ N Sbjct: 64 CQIAAQKGERVAYVPLKRAVIMAPEILGGLEVAAFVAIDDIDHIAGYRHWEESLLHLYNL 123 Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 + + LL+ + P + LPDL SRL ++ DD + A R + Sbjct: 124 LQEGRGRLLLASTDKPSTLHWLLPDLRSRLGWGLGYQLQPLDDHQKHAALQFQAAKRGLE 183 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + ++A ++++ ER + ++ +++ +++ +T +VL Sbjct: 184 LPDEVAGFLLRHSERDMHSLSSILAQLERASMAAQRRLTVPFVRQVLD 231 >gi|107100403|ref|ZP_01364321.1| hypothetical protein PaerPA_01001428 [Pseudomonas aeruginosa PACS2] gi|313105833|ref|ZP_07792096.1| hypothetical protein PA39016_000110130 [Pseudomonas aeruginosa 39016] gi|310878598|gb|EFQ37192.1| hypothetical protein PA39016_000110130 [Pseudomonas aeruginosa 39016] Length = 225 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 86/206 (41%), Gaps = 12/206 (5%) Query: 46 HSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL- 104 +A+ RL ++ W ++ L G G G+S L + I + ++ Sbjct: 18 AAALGYVERLCEAEAGWAESLIYLWGHDGVGRSHLLQAACLRFEQFEERTIYLPMADLVQ 77 Query: 105 --------IDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 ++ + V ++D+D+L + LFH+ N + LL+ A P V Sbjct: 78 YGPEIFDDLEQCELVCIDDLDVLVGKREWEEGLFHLFNRLRDTGRRLLLAASKSPRELQV 137 Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213 LPDL SRL A + ++ D+ + + + R + + ++ +I+ R RS+ Sbjct: 138 KLPDLKSRLTMALIFQLHGLSDEDKLRALQLRASRRGLHLTDEVGRFILNRGSRSMNSLF 197 Query: 214 KLVDKMDNLALSRGMGITRSLAAEVL 239 L++++D +L +T E L Sbjct: 198 DLLEQLDRASLQAQRKLTIPFLKETL 223 >gi|295689652|ref|YP_003593345.1| chromosomal replication initiator DnaA [Caulobacter segnis ATCC 21756] gi|295431555|gb|ADG10727.1| Chromosomal replication initiator DnaA [Caulobacter segnis ATCC 21756] Length = 229 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 68/226 (30%), Positives = 103/226 (45%), Gaps = 4/226 (1%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 Q +R+D V + AV +++WP+WP + L+GP+G GK+ LA W Sbjct: 2 STQFRLPLTAAPTYAREDFAVSPSNADAVARVEAWPAWPEGRLALIGPAGVGKTHLARAW 61 Query: 85 SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL----LDFNDTQLFHIINSIHQYDSSL 140 + + + K +L+ED D +D LFHI+N ++ Sbjct: 62 AAAHDAVVVEATGDDAPDLPALRGKAILVEDADRRAEGTALSDEALFHILNMAGVDGGTV 121 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L+T R PV W +PDL SRL A V I PDD LE V+ + F R + D L Y Sbjct: 122 LLTGRAAPVGWAANVPDLRSRLNALCVASIEAPDDVVLEAVLRRAFEHRLLKPDPDLYPY 181 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 ++ R+ RS A D +D A + ++LA EVL + + + Sbjct: 182 LLLRLPRSAAEAIAAADLLDEAAAQMRRELNKALAREVLGDFEGDE 227 >gi|330813923|ref|YP_004358162.1| chromosomal replication initiator protein DnaA [Candidatus Pelagibacter sp. IMCC9063] gi|327487018|gb|AEA81423.1| chromosomal replication initiator protein DnaA [Candidatus Pelagibacter sp. IMCC9063] Length = 208 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 48/207 (23%), Positives = 97/207 (46%), Gaps = 2/207 (0%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 EQ F+ +D + + + + WP+W ++ + GP SGK+ L ++ Sbjct: 3 EQQIFNLSTEEYFFEEDFCISQSNQDVCNYLRKWPNWDDNIINIFGPKKSGKTFLLTVFE 62 Query: 86 DKSRSTRFSNIAKSLDSILID-TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTA 144 K+ R S + +++ ++ +++ED++ + ++ LF + N + L+ ++ Sbjct: 63 RKNSFFRISANTLNKETVSSALSQDRLIIEDVEE-NTDEELLFLLFNEFKNNNKYLIFSS 121 Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 L DL SR K+ ++IS P D L V++K +++QI I K+L + ++R Sbjct: 122 TQDSSRISFQLQDLSSRFKSMLNLEISNPSDTLLCSVLMKQLSEKQITIKKELITHTIKR 181 Query: 205 MERSLVFAEKLVDKMDNLALSRGMGIT 231 +ERS K +D +L +T Sbjct: 182 IERSYDSVNKFSVMIDEESLKNKKKLT 208 >gi|270158123|ref|ZP_06186780.1| DnaA regulatory inactivator Hda [Legionella longbeachae D-4968] gi|289163612|ref|YP_003453750.1| ATPase regulatory factor involved in DnaA inactivation [Legionella longbeachae NSW150] gi|269990148|gb|EEZ96402.1| DnaA regulatory inactivator Hda [Legionella longbeachae D-4968] gi|288856785|emb|CBJ10596.1| ATPase regulatory factor involved in DnaA inactivation [Legionella longbeachae NSW150] Length = 230 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 99/228 (43%), Gaps = 14/228 (6%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDS-WPSWPSRVVILVGPSGSGKSCLANIW 84 +QL + S +D + + +++ +R++ L G SGSGKS L Sbjct: 3 KQLALAIKLNEQASLEDFNWGN-NRLLQQQLENMLHYRENRLLYLWGVSGSGKSHLLQAC 61 Query: 85 SDK---SRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFN---DTQLFHIINSI 133 + ++S + +A + I+ + + ++DI ++ + + LFH+ N + Sbjct: 62 CQEVNLTQSAIYLPLALLKEWGPQTIEGIEDQTLICIDDIHIIATDSIWEEALFHLYNKV 121 Query: 134 HQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 + ++L+ + P + + LPDL SRL V+++ DD + R Sbjct: 122 KDSERNILIISGNQSPATIPIKLPDLRSRLSWGLVIQLMELDDQDKINTLKHHALKRGFD 181 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + +++ R R++ +++++D+ +L+ IT ++L Sbjct: 182 LPDSVGQFLLNRCSRNMHDLHHILNRLDDASLAAQRKITIPFVKDILN 229 >gi|292491000|ref|YP_003526439.1| DnaA regulatory inactivator Hda [Nitrosococcus halophilus Nc4] gi|291579595|gb|ADE14052.1| DnaA regulatory inactivator Hda [Nitrosococcus halophilus Nc4] Length = 235 Score = 174 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 93/227 (40%), Gaps = 13/227 (5%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW-PSWPSRVVILVGPSGSGKSCLANIW 84 +QL S ++ + + + V ++ R + L GPSG GK+ L Sbjct: 4 QQLPLPIGEYGAPSFENYYLADSNRELVAAVERCGQGEGERFLYLWGPSGVGKTHLLLAA 63 Query: 85 S-------DKSRSTRFSNIAKSLDSIL--IDTRKPVLLEDIDLLDF---NDTQLFHIINS 132 ++ A IL ++ V ++DID + + L H+ N Sbjct: 64 CQAAAQRGERVAYVPLKRAAIMAPEILRGLEAAALVAIDDIDRIAGCRYWEESLLHLYNL 123 Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 + S LL+ + P + + LPDL SRL V ++ DD + A R + Sbjct: 124 SREGPSQLLLASSKKPGALPLLLPDLRSRLGWGLVYQLQPLDDHQKHAALKLQAAKRGME 183 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + ++AA++++ +R + L+ +++ +++ +T A +VL Sbjct: 184 LPDEVAAFLLRHSDRDMHSLSDLLAQLERASMAAQRRLTIPFARQVL 230 >gi|89095234|ref|ZP_01168156.1| DnaA family protein [Oceanospirillum sp. MED92] gi|89080488|gb|EAR59738.1| DnaA family protein [Oceanospirillum sp. MED92] Length = 234 Score = 174 bits (443), Expect = 7e-42, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 85/229 (37%), Gaps = 14/229 (6%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP-SRVVILVGPSGSGKSCLA 81 N Q+ S ++ E + + + + G G G + L Sbjct: 4 NHPFQIPLSVSLRDDARFENFY-AQGNELVCATLKAAAQGTGEQFTFIWGNEGVGCTHLL 62 Query: 82 NIWSDKSRSTRFSNIAKSLDSI---------LIDTRKPVLLEDIDLLDFN---DTQLFHI 129 ++ S LD + ++ V L+ + + + + LFH Sbjct: 63 QAICHEAEPLGRSAAYLPLDELKHMGSGILEGMEFLDLVCLDAVQSVAGDRDWEVALFHF 122 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N I + ++L++ + + P G+ LPDL SRL V ++ DD K I + R Sbjct: 123 FNRIREQGNTLVIASTSAPRYLGISLPDLASRLSWGMVFQVQPLSDDTKLKAIQMRASAR 182 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238 + ++A +++ R++ L+D +D +LS +T EV Sbjct: 183 GLEFSDEVARFLLHHASRNMNDLTSLLDTLDQASLSAKRKVTIPFIKEV 231 >gi|254492445|ref|ZP_05105617.1| chromosomal replication initiator protein DnaA [Methylophaga thiooxidans DMS010] gi|224462337|gb|EEF78614.1| chromosomal replication initiator protein DnaA [Methylophaga thiooxydans DMS010] Length = 234 Score = 174 bits (443), Expect = 7e-42, Method: Composition-based stats. Identities = 49/228 (21%), Positives = 98/228 (42%), Gaps = 16/228 (7%) Query: 27 QLFFSFPRCLGISRDDLLVHSA-IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 QL D+ L E+A+ + + L G +G+GK+ L + Sbjct: 7 QLTLRLSPQEIYHFDNYLFAKTETERALESFCRLDN--LDFLYLYGETGTGKTHLLIACA 64 Query: 86 DKSRSTRFSNIAKSLDSIL----------IDTRKPVLLEDIDLLDFN---DTQLFHIINS 132 +K + F I SL ++ ++ + L+D++ + N + LFH N Sbjct: 65 EKVQKLGFRVIYLSLAELIQTSEPAVLQSLEQADLLCLDDLEAVAGNKEWEVALFHCFNR 124 Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 +H SLL++A P + + LPDLCSRL V +++ D+ ++ ++ R + Sbjct: 125 LHDAKGSLLVSAEHNPANSQIQLPDLCSRLATGLVYQLTTMSDEQKQQALILQSQKRGLT 184 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 ++ +A Y+++ R + ++ ++D +L +T +VL Sbjct: 185 MNDDVAQYLLRHYGRDMPALMSVLQQLDKASLQAKRKLTIPFIRQVLA 232 >gi|34499069|ref|NP_903284.1| DnaA regulatory inactivator Hda [Chromobacterium violaceum ATCC 12472] gi|34104919|gb|AAQ61276.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 224 Score = 173 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 86/223 (38%), Gaps = 10/223 (4%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 +QL + D+ L + + + + R + L G G GK+ L W Sbjct: 2 DQLVLDLTPTPLPAFDNFL-AERNREVITALTATEG--ERFIYLWGEPGCGKTHLLQAWI 58 Query: 86 DKS----RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT-QLFHIINSIHQYD-SS 139 + R+ + + + ++ +D L +D LF NS+ + Sbjct: 59 AHAERLGRAAIYLDGKGDHLPDFAREASFIAVDHVDDLAPDDQIMLFSFYNSLKEGGEGR 118 Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199 LLM R PV+ V DL +RL V+++ DD + A+RQ+ I + Sbjct: 119 LLMAGRKPPVALSVR-DDLRTRLGWGLVLEVKALSDDDKLAALRSHAANRQLSIPDDVYR 177 Query: 200 YIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 Y++ R L ++D +D +L+ IT L VL+ Sbjct: 178 YLLTHWRRDLTSLISMIDMLDRYSLALRRPITVPLVKNVLQTA 220 >gi|91792999|ref|YP_562650.1| DNA replication initiation factor [Shewanella denitrificans OS217] gi|91715001|gb|ABE54927.1| regulatory inactivation of DnaA Hda protein [Shewanella denitrificans OS217] Length = 236 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 95/235 (40%), Gaps = 18/235 (7%) Query: 22 KNKEEQLFFS--FPRCLGISRDDLLVHSAIEQAVRLIDS-WPSWPSRVVILVGPSGSGKS 78 +N QL P S ++ ++ + + S + + GP SG++ Sbjct: 3 QNSPRQLSLPVYLPDDETFQS--YYPASGNDELIQKLQASAQGGLSSSLYIYGPVKSGRT 60 Query: 79 CLANIWSDKSRS---------TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQL 126 L + + +++ + + ++DID + + + + Sbjct: 61 HLMHAACALANDKDRRTLYIPLGIHASISPALFEGLESLELICIDDIDAIAGHPIWEEAI 120 Query: 127 FHIINSIHQY-DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 FH+ N I ++ D L+++ + P G LPDL SR++ + ++ DD + + Sbjct: 121 FHLYNRIAEHKDCHLIVSGKASPTEAGFLLPDLVSRMQWGLIYQLQPMADDEKLLALQRR 180 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 A R + + ++ +++ RM R L ++DK+D ++ +T E+L+ Sbjct: 181 AAMRGLQLSDEVGRFLLTRMARDLRTLFDVLDKLDKASMVHQRKLTIPFIKEMLR 235 >gi|52842998|ref|YP_096797.1| DnaA-like family protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52630109|gb|AAU28850.1| DnaA-like family protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 245 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 98/227 (43%), Gaps = 12/227 (5%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 +QL + + DD + +LI+ R++ L GP GSGKS L Sbjct: 18 KQLALAIKLNDEATLDDFNWGNNTLLQQQLIEMLSFKADRLLYLWGPKGSGKSHLLQACC 77 Query: 86 DK---SRSTRFSNIA-----KSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIH 134 ++S + +A ++ + + ++DI+ + + + LFH+ N I Sbjct: 78 QAINLTQSAIYLPLAFLKEWGPQSIEGLEDQTLICIDDINTIANDSAWEEALFHLYNKIK 137 Query: 135 QYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193 + SLL+ + P+ + L DL SRL V++++ +DD + A R + Sbjct: 138 DSERSLLIISGNQPPIKCDIKLADLRSRLSWGLVIQLNELNDDEKINTLKMRAAKRGFEL 197 Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + +++ R R++ ++++++D+ + IT +LK Sbjct: 198 PESVGHFLLNRCSRNMHDLYEILNQLDDASWEAHRKITIPFVKNILK 244 >gi|119472478|ref|ZP_01614577.1| putative regulatory factor involved in inactivation of DnaA [Alteromonadales bacterium TW-7] gi|119444915|gb|EAW26214.1| putative regulatory factor involved in inactivation of DnaA [Alteromonadales bacterium TW-7] Length = 241 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 48/236 (20%), Positives = 98/236 (41%), Gaps = 22/236 (9%) Query: 23 NKEEQLFFS--FPRCLGI----SRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSG 76 ++ Q+ P +D L + ++ + + + + L G SG Sbjct: 9 HEPMQMALPVTLPDDETFASYFGGEDSLEVNHLKASFSELAN----SFQYTYLCGLGDSG 64 Query: 77 KSCLANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DT 124 KS L K++ SN+ S+ ++ ++ + ++D+ L+ N + Sbjct: 65 KSHLLYATCIKAQERGLSNMLLSMREVINFGPMVLDGLEALDVLCIDDVHLVAGNDAWEK 124 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 LF+ N ++ L++TA P + LPDL SRL T +I DD + +VK Sbjct: 125 ALFNFFNRFNEPGKMLVVTADLLPNMLNISLPDLESRLTWGTTFQIRSMSDDDKAQALVK 184 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 R + + + A +++ R+ R + ++DK+D+ +++ +T LK Sbjct: 185 RAHMRGLELSDECARFLLTRLSRDMRALLDVLDKLDHASMAAQRKLTIPFIKSTLK 240 >gi|54295630|ref|YP_128045.1| hypothetical protein lpl2717 [Legionella pneumophila str. Lens] gi|53755462|emb|CAH16958.1| hypothetical protein lpl2717 [Legionella pneumophila str. Lens] gi|307611672|emb|CBX01364.1| hypothetical protein LPW_30571 [Legionella pneumophila 130b] Length = 230 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 98/227 (43%), Gaps = 12/227 (5%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 +QL + + DD + +LI+ R++ L GP GSGKS L Sbjct: 3 KQLALAIKLNDEATLDDFNWGNNTLLQQQLIEMLSFKADRLLYLWGPKGSGKSHLLQACC 62 Query: 86 DK---SRSTRFSNIA-----KSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIH 134 ++S + +A ++ + + ++DI+ + + + LFH+ N I Sbjct: 63 QAINLTQSAIYLPLAFLKEWGPQSIEGLEDQTLICIDDINTIANDSTWEEALFHLYNKIK 122 Query: 135 QYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193 + SLL+ + P+ + L DL SRL V++++ +DD + A R + Sbjct: 123 DSERSLLIISGNQPPIKCDIKLADLRSRLSWGLVIQLNELNDDEKINTLKMRAAKRGFEL 182 Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + +++ R R++ +L++++D+ + IT +LK Sbjct: 183 PESVGHFLLNRCSRNMHDLYELLNRLDDASWEAHRKITIPFVKNILK 229 >gi|332534259|ref|ZP_08410104.1| chromosomal replication initiator protein DnaA [Pseudoalteromonas haloplanktis ANT/505] gi|332036339|gb|EGI72810.1| chromosomal replication initiator protein DnaA [Pseudoalteromonas haloplanktis ANT/505] Length = 236 Score = 172 bits (437), Expect = 4e-41, Method: Composition-based stats. Identities = 44/188 (23%), Positives = 84/188 (44%), Gaps = 12/188 (6%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLED 115 + L G SGKS L K++ SN+ S+ ++ ++ + ++D Sbjct: 48 QYTYLCGLGDSGKSHLLYATCIKAQERGLSNMLLSMREVIDFGPMVLDGLEALDVLCIDD 107 Query: 116 IDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 + L+ N + LF+ N ++ L++TA P + LPDL SRL T +I Sbjct: 108 VHLVAGNDAWEKALFNFFNRFNEPGKMLVVTADLLPSMLNISLPDLESRLTWGTTFQIRS 167 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232 DD + +VK R + + + A +++ R+ R + ++DK+D+ +++ +T Sbjct: 168 MSDDDKAQALVKRAHMRGLELSDECARFLLTRLSRDMRALLDVLDKLDHASMAAQRKLTI 227 Query: 233 SLAAEVLK 240 LK Sbjct: 228 PFIKSTLK 235 >gi|88812592|ref|ZP_01127840.1| hypothetical protein NB231_08610 [Nitrococcus mobilis Nb-231] gi|88790186|gb|EAR21305.1| hypothetical protein NB231_08610 [Nitrococcus mobilis Nb-231] Length = 244 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 87/232 (37%), Gaps = 14/232 (6%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSR-VVILVGPSGSGKSCLANIW 84 QL F + +AV ++ R V+ L G G GKS L Sbjct: 13 RQLALDFQWDERFDFAGFVAGP-NAEAVAALELIGKGDRRRVIYLYGEPGVGKSHLLQAA 71 Query: 85 SDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFHIINS 132 ++ + + + L ++ ++ V L+D+D L FH+ N Sbjct: 72 CGEASAWGRAVVYLPLRQLVNRSPRLLQELEGVDVVALDDLDCLTKAIEWQQAAFHLFNR 131 Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 + LLM P G+ LPDL SRL+ V+++ D+ + + R + Sbjct: 132 LQDAGRELLMAGPRRPAKLGLALPDLVSRLQGVLVLRLEKLGDEDNVLALSRRAQRRGLE 191 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 + K A Y++ R + +L+DK D +L +T +VL E Sbjct: 192 LPKATARYLLNHCRRDTGYFFQLLDKFDAASLQAQRRLTVPFVKKVLAEANN 243 >gi|209363740|ref|YP_001423690.2| DnaA-related protein [Coxiella burnetii Dugway 5J108-111] gi|207081673|gb|ABS77135.2| DnaA-related protein [Coxiella burnetii Dugway 5J108-111] Length = 260 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 40/239 (16%), Positives = 80/239 (33%), Gaps = 11/239 (4%) Query: 13 PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGP 72 PD + +QL + + + I L + + L G Sbjct: 13 PDNVNSSHSLTMIDQLPLRVQLREETTFANFYGGNNITLLKALNELLEGKGESFIYLWGE 72 Query: 73 SGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI--------DTRKPVLLEDIDLLDFN-- 122 G++ L + + L + + +++ + ++DID + Sbjct: 73 PSVGRTHLLQACCHTMNNRSLEAMYLPLKTPQLAPSILQGLESKPLICIDDIDAVLSQPD 132 Query: 123 -DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 + L H N + + L++ P L DL SRL V ++ D K Sbjct: 133 WEEALLHFYNRVRESQVKLVIAGNYVPPQLNCQLADLRSRLSWGLVFQVIGLTDAEKIKA 192 Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + DR + ++ ++++ R + L+DK+D +L +T EVL Sbjct: 193 LQMRAHDRGFELSDEVGQFLLRHYPRDMSALFNLLDKLDQASLIAQRKLTVPFVKEVLN 251 >gi|148361114|ref|YP_001252321.1| DnaA-like family transporter protein [Legionella pneumophila str. Corby] gi|296108445|ref|YP_003620146.1| DnaA-like family protein [Legionella pneumophila 2300/99 Alcoy] gi|148282887|gb|ABQ56975.1| DnaA-like family protein [Legionella pneumophila str. Corby] gi|295650347|gb|ADG26194.1| DnaA-like family protein [Legionella pneumophila 2300/99 Alcoy] Length = 230 Score = 172 bits (436), Expect = 5e-41, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 98/227 (43%), Gaps = 12/227 (5%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 +QL + + DD + +LI+ R++ L GP GSGKS L Sbjct: 3 KQLALAIKLNDEATLDDFNWGNNTLLQQQLIEMLSFKADRLLYLWGPKGSGKSHLLQACC 62 Query: 86 DK---SRSTRFSNIA-----KSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIH 134 ++S + +A ++ + + ++DI+ + + + LFH+ N I Sbjct: 63 QAINLTQSAIYLPLAFLKEWGPQSIEGLEDQTLICIDDINTIANDSAWEEALFHLYNKIK 122 Query: 135 QYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193 + SLL+ + P+ + L DL SRL V++++ +DD + A R + Sbjct: 123 DSERSLLIISGNQPPIKCDIKLADLRSRLSWGLVIQLNELNDDEKINTLKMRAAKRGFEL 182 Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + +++ R R++ +L++++D+ + IT +LK Sbjct: 183 PESVGHFLLNRCSRNMHDLYELLNQLDDASWEAHRKITIPFVKNILK 229 >gi|148261518|ref|YP_001235645.1| ATPase involved in DNA replication initiation-like protein [Acidiphilium cryptum JF-5] gi|146403199|gb|ABQ31726.1| ATPase involved in DNA replication initiation-like protein [Acidiphilium cryptum JF-5] Length = 247 Score = 171 bits (435), Expect = 6e-41, Method: Composition-based stats. Identities = 59/223 (26%), Positives = 105/223 (47%), Gaps = 3/223 (1%) Query: 24 KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI 83 + Q+ F + D + ++ A + + W +R ++L G +GSGKS LA I Sbjct: 7 EPRQMALPFDEPERFALADFIEAASNAAARAALAAPGDWVNRRLVLWGEAGSGKSHLAWI 66 Query: 84 WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMT 143 W+ ++ +TR A L + P+L+EDID + Q +LMT Sbjct: 67 WAARTCATRLD--AARLRTPASPGGAPLLIEDIDAAAAPLALFATLE-RATQAAVPVLMT 123 Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203 RT P V PDL SRL+A+ ++I + + L+ ++ ++ A RQ+ + L +++ Sbjct: 124 CRTPPARLPVEPPDLASRLRASLTIRIEPAEPELLDALLHRLAAARQMSLPPALHQFLLT 183 Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 R+ R + + ++D AL+ G +R LA +L E + Sbjct: 184 RLPRRPAVLREAIARLDRYALALGTAPSRRLAERLLDELADPE 226 >gi|254496112|ref|ZP_05109011.1| DnaA-like family protein [Legionella drancourtii LLAP12] gi|254354653|gb|EET13289.1| DnaA-like family protein [Legionella drancourtii LLAP12] Length = 226 Score = 171 bits (435), Expect = 6e-41, Method: Composition-based stats. Identities = 47/190 (24%), Positives = 87/190 (45%), Gaps = 14/190 (7%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI---------LIDTRKPVLLE 114 R++ L G SGSGKS L T+ S I L+ + ++ + V ++ Sbjct: 37 DRLLYLWGASGSGKSHLLQASCQAVNLTQ-SAIYLPLNLLKEWGPQTIEGLEEQALVCID 95 Query: 115 DIDLLDFN---DTQLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKI 170 DID + + + LFH+ N I D LL+ + P + + LPDL SRL V+++ Sbjct: 96 DIDAIAEDSAWEEALFHLYNKIKDLDKGLLIISGNQSPTTLAIKLPDLRSRLSWGLVIQL 155 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 D+ + R + + + +++ R R++ ++L++++D+ +L+ I Sbjct: 156 MELSDEDKINTLKLHALRRGFDLPESVGQFLLNRCSRNMHDLQQLLNRLDDASLAAQRKI 215 Query: 231 TRSLAAEVLK 240 T E LK Sbjct: 216 TIPFVKETLK 225 >gi|254294273|ref|YP_003060296.1| DNA replication ATPase [Hirschia baltica ATCC 49814] gi|254042804|gb|ACT59599.1| ATPase-like protein involved in DNA replication initiation [Hirschia baltica ATCC 49814] Length = 240 Score = 171 bits (435), Expect = 6e-41, Method: Composition-based stats. Identities = 58/225 (25%), Positives = 109/225 (48%), Gaps = 7/225 (3%) Query: 24 KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI 83 K +QL FP+ + L+ A E A + W WP R + L+G +GSGK+ + Sbjct: 16 KSKQLVLDFPKLDA-DLEPLIATPASEDARLALSRWEYWPERQMCLIGSAGSGKTRMLRN 74 Query: 84 WSDKSRSTRFSNI---AKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140 W+ + + + + A +D I + K +++++ D N L +N + L Sbjct: 75 WAQDTGAAYVTGVDLSAAEIDEISGLSVKALVVDNADSCS-NGGSLLAAMNLCKSRGAFL 133 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L++ T P SW + DL SRL A VVK D++ L+ +V + + + + A Y Sbjct: 134 LLSGSTDPSSWNMKPLDLQSRLSALPVVKFGAIDEETLKIRLVSACKSKFMKLPDETADY 193 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 +VQR+ R+ + +++V+K+ ++ G + R+ A + + +Q Sbjct: 194 LVQRLARTYLVIDEIVEKL--ELVAAGKALNRTTARKAIAALEQS 236 >gi|88706615|ref|ZP_01104318.1| DnaA-like protein hda [Congregibacter litoralis KT71] gi|88699111|gb|EAQ96227.1| DnaA-like protein hda [Congregibacter litoralis KT71] Length = 234 Score = 171 bits (435), Expect = 6e-41, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 97/229 (42%), Gaps = 11/229 (4%) Query: 20 QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSC 79 + + QL + ++ ++ + + + P + L G +G GKS Sbjct: 6 AAEEQSPQLALKIGLRDEATFENFCPRPSLAAVLDSMTRPAAEPLQF--LHGAAGEGKSH 63 Query: 80 LANIWSDKSRSTRFSNIAKSLDSIL------IDTRKPVLLEDIDLLDFN---DTQLFHII 130 L + + +A+ + ++T + L++++ + + + LFH++ Sbjct: 64 LLQALCHATAGALYLPLAELRGAHPGALLENLETAALLALDNLEHIAGDGEWEEALFHLM 123 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N L + AR+ + G+ LPDL SRL ++ +D+ + +++ R Sbjct: 124 NRARAAQCPLWVAARSPAMDLGIELPDLRSRLGGGVTWAMTPANDEEMRRILQFRAERRG 183 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + + +A+Y+ R R+L ++++DN +L R +T L EV+ Sbjct: 184 LAMPDAVASYLCARETRALGDLMDTLNRLDNASLQRQRPLTVPLVREVM 232 >gi|226939439|ref|YP_002794512.1| DnaA regulatory inactivator Hda [Laribacter hongkongensis HLHK9] gi|226714365|gb|ACO73503.1| DnaA-related protein [Laribacter hongkongensis HLHK9] Length = 223 Score = 171 bits (435), Expect = 7e-41, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 88/224 (39%), Gaps = 9/224 (4%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 +QL + D + Q + + R + L G +G GK+ L W Sbjct: 2 DQLVLDLTPPPAPAFDHFI-AEHNRQIIAALTDAQG--ERFIYLWGAAGVGKTHLLQQWV 58 Query: 86 DKSRSTRFSNIAKSLDSILID----TRKPVLLEDIDLLDFNDT-QLFHIINSIHQYDSSL 140 + + + + I + + + V ++ +D L+ +D LF I NS+ D L Sbjct: 59 EHANAVGRAAIYLDARAEKLPDFAREARCVAVDHVDELEPDDQITLFSIFNSLRDSDGQL 118 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L R P + DL +RL V ++ D + + R + + + + + Sbjct: 119 LTAGREPPQRLKLR-DDLRTRLGWGLVFQVQAMSDADKLAALRRHAQMRLVNVPEDVLRW 177 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 ++ R + +VD +D+ +L+ IT L +L+ ++Q Sbjct: 178 LITHWRRDMASLVSMVDALDHYSLALQKPITVPLVKHILQTSRQ 221 >gi|54298784|ref|YP_125153.1| hypothetical protein lpp2848 [Legionella pneumophila str. Paris] gi|53752569|emb|CAH14001.1| hypothetical protein lpp2848 [Legionella pneumophila str. Paris] Length = 230 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 99/227 (43%), Gaps = 12/227 (5%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 +QL + + D+ + I +LI+ R++ L GP GSGKS L Sbjct: 3 KQLALAIKLNDEATLDNFNWGNNILLQQQLIEMLSFKADRLLYLWGPKGSGKSHLLQACC 62 Query: 86 DK---SRSTRFSNIA-----KSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIH 134 ++S + +A ++ + + ++DI+ + + + LFH+ N I Sbjct: 63 QAINLTQSAIYLPLAFLKEWGPQSIEGLEDQTLICIDDINTIANDSAWEEALFHLYNKIK 122 Query: 135 QYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193 + SLL+ + P+ + L DL SRL V++++ +DD + A R + Sbjct: 123 DSERSLLIISGNQPPIKCDIKLADLRSRLSWGLVIQLNELNDDEKINTLKMRAAKRGFEL 182 Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + +++ R R++ +L++++D+ + IT +LK Sbjct: 183 PESVGHFLLNRCSRNMHDLYELLNRLDDASWEAHRKITIPFVKNILK 229 >gi|189425233|ref|YP_001952410.1| Chromosomal replication initiator DnaA [Geobacter lovleyi SZ] gi|189421492|gb|ACD95890.1| Chromosomal replication initiator DnaA [Geobacter lovleyi SZ] Length = 229 Score = 171 bits (434), Expect = 8e-41, Method: Composition-based stats. Identities = 47/221 (21%), Positives = 89/221 (40%), Gaps = 7/221 (3%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDS--WPSWPSRVVILVGPSGSGKSCLANI 83 +Q P ++ + + A+ P+ P +++ L GP+GSGK+ L + Sbjct: 2 QQQALDLPVTPRYGFENFISCAGNSTALEFSRRITDPAEPEKLLYLYGPAGSGKTHLLHA 61 Query: 84 WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN-----DTQLFHIINSIHQYDS 138 + ++ ++ ++ + T LL DL L+ N + Sbjct: 62 IGRQLAGEQYQVLSCRNLTVPVATNPGSLLLVDDLDQLPDRPELRNALWEAFNQQYSSGH 121 Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198 +L + R P L SRL V ++ + DD + +I K+ DRQI + ++A Sbjct: 122 TLALAGRFAPKELPTIDDHLISRLLWGLVARLDVSDDRSRQMLIAKLAQDRQIILPDEVA 181 Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 +++ + R + D + AL R IT LA E++ Sbjct: 182 GWLLTVLPRDVGSLVSACDALYRAALQRKCRITLRLARELV 222 >gi|120599138|ref|YP_963712.1| DNA replication initiation factor [Shewanella sp. W3-18-1] gi|120559231|gb|ABM25158.1| regulatory inactivation of DnaA Hda protein [Shewanella sp. W3-18-1] Length = 236 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 93/236 (39%), Gaps = 18/236 (7%) Query: 21 PKNKEEQLFFS--FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP-SRVVILVGPSGSGK 77 P N QL P + + ++ ++ + + + L GP SG+ Sbjct: 2 PLNSPLQLSLPVYLPDDETFNS--YYPAAGNDELIQKLRANAEGSGEAAIYLWGPVKSGR 59 Query: 78 SCLANIWSDKSRST---------RFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQ 125 + L + + + ++ V ++D+D + + + Sbjct: 60 THLMHAACAHANELDRRSFYIPLGIHASISTALLEGLEQLDLVCIDDVDAIAGHPIWEEA 119 Query: 126 LFHIINSIHQY-DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 +F + N + ++ + +L+++ + P G LPDL SR++ ++ DD + + Sbjct: 120 IFDLYNRVAEHKNCALVVSGSSSPAEAGFLLPDLVSRMQWGLNYQLQPMADDEKLAALQR 179 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 A R + + + + +++ RM R L ++DK+D +L +T A E+L Sbjct: 180 RAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDKLDKASLVHQRKLTIPFAKEMLH 235 >gi|170726517|ref|YP_001760543.1| DNA replication initiation factor [Shewanella woodyi ATCC 51908] gi|169811864|gb|ACA86448.1| DnaA regulatory inactivator Hda [Shewanella woodyi ATCC 51908] Length = 236 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 98/234 (41%), Gaps = 18/234 (7%) Query: 23 NKEEQLFFS--FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS-RVVILVGPSGSGKSC 79 N QL P + + ++ ++ + + S R V L GP SG++ Sbjct: 4 NSPIQLSLPVHLPDDETFNS--YYPAAGNDELIQSLQACAEGSSERSVYLWGPVKSGRTH 61 Query: 80 LANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLF 127 L + + + S+ L +++ + ++D+D + + + +F Sbjct: 62 LMHAACAHANDLQRSSFYLPLGIHASISTALLEGLESLDLICIDDVDAIAGHPLWEEAIF 121 Query: 128 HIINSIHQY-DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 + N + ++ + SL+++A P G LPDL SR++ ++ D+ + + Sbjct: 122 DLYNRVSEHKNCSLIVSASVSPNDSGFTLPDLISRMQWGLNYQLQPMADEEKLAALQRRA 181 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 A R + + + + +++ R+ R L ++D++D +L +T E+L+ Sbjct: 182 AMRGLQLPEDVGRFLLNRLARDLRTLFDVLDRLDKASLVHQRKLTIPFVKEMLR 235 >gi|315126230|ref|YP_004068233.1| regulatory factor involved in inactivation of DnaA [Pseudoalteromonas sp. SM9913] gi|315014744|gb|ADT68082.1| regulatory factor involved in inactivation of DnaA [Pseudoalteromonas sp. SM9913] Length = 228 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 44/188 (23%), Positives = 86/188 (45%), Gaps = 12/188 (6%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLED 115 + L G SGKS L +++ SN+ S+ ++ ++ + ++D Sbjct: 40 QYTYLCGLGDSGKSHLLYATCIQAQERGLSNMLLSMREVIHFGPMVLDGLEALDVLCIDD 99 Query: 116 IDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 + L+ N + LF+ N ++ + L++TA P + LPDL SRLK T +I Sbjct: 100 VHLVAGNDAWEKALFNFFNRFNEPNKMLVVTADLLPNMLNISLPDLESRLKWGTTFQIRS 159 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232 DD + +VK R + + + A +++ R+ R + ++DK+D+ +++ +T Sbjct: 160 MSDDDKAQALVKRANMRGLELSDECARFLLTRLSRDMRALLDVLDKLDHASMAAQRKLTI 219 Query: 233 SLAAEVLK 240 LK Sbjct: 220 PFIKSTLK 227 >gi|114562926|ref|YP_750439.1| DNA replication initiation factor [Shewanella frigidimarina NCIMB 400] gi|114334219|gb|ABI71601.1| regulatory inactivation of DnaA Hda protein [Shewanella frigidimarina NCIMB 400] Length = 236 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 92/235 (39%), Gaps = 18/235 (7%) Query: 22 KNKEEQLFFS--FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP-SRVVILVGPSGSGKS 78 +N QL P S ++ ++ + + + + + GP SG++ Sbjct: 3 QNSPRQLSLPVYLPDDETFQS--YYPASGNDELIQKLQASAEGNLASSLYVYGPEKSGRT 60 Query: 79 CLANIWSDKSRST---------RFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQL 126 L + + +++ + + ++DI+ + + + + Sbjct: 61 HLMHAACALANDLERRTLYIPLGIHASISPALFEGLESLELICIDDIEAIAGHPVWEEAI 120 Query: 127 FHIINSIHQYD-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 FH+ N I + L++ + P G LPDL SR++ + ++ DD + + Sbjct: 121 FHLYNRIAEQQDCRLIVNGKASPSETGFLLPDLVSRMQWGLIYQLQPMADDEKLVALQRR 180 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 A R + + ++ +++ RM R L ++DK+D ++ +T E+L+ Sbjct: 181 AAMRGLQLSDEVGRFLLTRMARDLRTLFDVLDKLDKASMVHQRKLTIPFIKEMLR 235 >gi|126174013|ref|YP_001050162.1| DNA replication initiation factor [Shewanella baltica OS155] gi|153000304|ref|YP_001365985.1| DNA replication initiation factor [Shewanella baltica OS185] gi|160874938|ref|YP_001554254.1| DNA replication initiation factor [Shewanella baltica OS195] gi|217973665|ref|YP_002358416.1| DNA replication initiation factor [Shewanella baltica OS223] gi|304411437|ref|ZP_07393051.1| DnaA regulatory inactivator Hda [Shewanella baltica OS183] gi|307305241|ref|ZP_07584989.1| DnaA regulatory inactivator Hda [Shewanella baltica BA175] gi|125997218|gb|ABN61293.1| regulatory inactivation of DnaA Hda protein [Shewanella baltica OS155] gi|151364922|gb|ABS07922.1| Chromosomal replication initiator DnaA [Shewanella baltica OS185] gi|160860460|gb|ABX48994.1| DnaA regulatory inactivator Hda [Shewanella baltica OS195] gi|217498800|gb|ACK46993.1| DnaA regulatory inactivator Hda [Shewanella baltica OS223] gi|304350292|gb|EFM14696.1| DnaA regulatory inactivator Hda [Shewanella baltica OS183] gi|306911544|gb|EFN41969.1| DnaA regulatory inactivator Hda [Shewanella baltica BA175] gi|315267174|gb|ADT94027.1| DnaA regulatory inactivator Hda [Shewanella baltica OS678] Length = 236 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 93/236 (39%), Gaps = 18/236 (7%) Query: 21 PKNKEEQLFFS--FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP-SRVVILVGPSGSGK 77 P N QL P + + ++ ++ + + + L GP SG+ Sbjct: 2 PLNSPLQLSLPVHLPDDETFNS--YYPAAGNDELIQKLRANAEGQGEAAIYLWGPVKSGR 59 Query: 78 SCLANIWSDKSRST---------RFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQ 125 + L + + + ++ V ++D+D + + + Sbjct: 60 THLMHAACAHANEVERRSFYIPLGIHASISTALLEGLEQLDLVCIDDVDAIAGHPVWEEA 119 Query: 126 LFHIINSIHQY-DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 +F + N + ++ + +L+++ + P G LPDL SR++ ++ DD + + Sbjct: 120 IFDLYNRVAEHKNCALVVSGSSSPADAGFLLPDLVSRMQWGLNYQLQPMADDEKLAALQR 179 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 A R + + + + +++ RM R L ++DK+D +L +T A E+L Sbjct: 180 RAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDKLDKASLVHQRKLTIPFAKEMLH 235 >gi|149186108|ref|ZP_01864422.1| ATPase [Erythrobacter sp. SD-21] gi|148830139|gb|EDL48576.1| ATPase [Erythrobacter sp. SD-21] Length = 203 Score = 169 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 53/220 (24%), Positives = 93/220 (42%), Gaps = 24/220 (10%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 Q+ +++ + + WP IL GP+ SGKS + ++ Sbjct: 3 QIALPLSHSGPQEPSSIVLGEGNAHIAEALAASADWPFGTAILAGPARSGKSLFSRWFAS 62 Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTART 146 + ++D D ++T++FH N + LL+T Sbjct: 63 HTGGG--------------------AIDDADQ--KDETEIFHAWNRAREDGYPLLLTVDA 100 Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206 W + LPDL SR+ AA ++I PDDD ++++ A R + + + AY++ RME Sbjct: 101 --GGWEIALPDLRSRMGAALQLEIGAPDDDLAAELMLSHAAQRGLALGEGAPAYLIPRME 158 Query: 207 RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 RS E++V ++D L+L R T S+ + L Q + Sbjct: 159 RSHAAIERIVAEIDRLSLERKAPATMSIWRDALDAVQGPE 198 >gi|146292791|ref|YP_001183215.1| DNA replication initiation factor [Shewanella putrefaciens CN-32] gi|145564481|gb|ABP75416.1| regulatory inactivation of DnaA Hda protein [Shewanella putrefaciens CN-32] gi|319426095|gb|ADV54169.1| DnaA regulatory inactivator Hda [Shewanella putrefaciens 200] Length = 236 Score = 169 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 93/236 (39%), Gaps = 18/236 (7%) Query: 21 PKNKEEQLFFS--FPRCLGISRDDLLVHSAIEQAVRLIDS-WPSWPSRVVILVGPSGSGK 77 P N QL P + + ++ ++ + + + L GP SG+ Sbjct: 2 PLNSPLQLSLPVYLPDDETFNS--YYPAAGNDELIQKLRANAEGNGEAAIYLWGPVKSGR 59 Query: 78 SCLANIWSDKSRST---------RFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQ 125 + L + + + ++ V ++D+D + + + Sbjct: 60 THLMHAACAHANELDRRSFYIPLGIHASISTALLEGLEQLDLVCIDDVDAIAGHPLWEEA 119 Query: 126 LFHIINSIHQY-DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 +F + N + ++ + +L+++ + P G LPDL SR++ ++ DD + + Sbjct: 120 IFDLYNRVAEHKNCALVVSGSSSPAEAGFLLPDLVSRMQWGLNYQLQPMADDEKLAALQR 179 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 A R + + + + +++ RM R L ++DK+D +L +T A E+L Sbjct: 180 RAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDKLDKASLVHQRKLTIPFAKEMLH 235 >gi|326386755|ref|ZP_08208376.1| ATPase [Novosphingobium nitrogenifigens DSM 19370] gi|326208808|gb|EGD59604.1| ATPase [Novosphingobium nitrogenifigens DSM 19370] Length = 212 Score = 169 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 57/219 (26%), Positives = 93/219 (42%), Gaps = 26/219 (11%) Query: 30 FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR 89 + P L + ++ ++ + + +WP R +L GP SGKS LA + + Sbjct: 4 IALPLELAGGGEIIVGGPSLHAVFAALQAPETWPYRTAVLSGPPRSGKSLLARWFVSSGQ 63 Query: 90 STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPV 149 L+D D L + ++FH N LL+ +R V Sbjct: 64 GD--------------------ALDDADRL--PEVEVFHRWNRAQADGRPLLLVSRQPVV 101 Query: 150 S----WGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 + W + LPDL SRL AA + I PDD L ++ + R + I + + +++ R+ Sbjct: 102 AGGDGWRITLPDLASRLGAALPLAIGAPDDILLRALVEEHARRRGLMIGESVLDWLLPRI 161 Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 ERS AE LV +D L+L R +T +L + L Sbjct: 162 ERSHAAAEALVATIDRLSLERKAPVTLALVRDALAGRVH 200 >gi|222055415|ref|YP_002537777.1| Chromosomal replication initiator DnaA [Geobacter sp. FRC-32] gi|221564704|gb|ACM20676.1| Chromosomal replication initiator DnaA [Geobacter sp. FRC-32] Length = 241 Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 49/241 (20%), Positives = 90/241 (37%), Gaps = 25/241 (10%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWP--SWPSRVVILVGPSGSGKSCLANI 83 QL F FP D+ +V + + A ++ L G GSGK+ L Sbjct: 1 MQLIFDFPVNSKYGFDNFVVCAGNKTAYHFARQLAEGDGTENLLYLYGAKGSGKTHLLTA 60 Query: 84 WSDKSRST--------------------RFSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123 ++ S + S + + +L++DI L+ ND Sbjct: 61 IANSIGSQSGLAALPSISFKDIDKIYDGHYPAEELSKLAEQFKSSPALLIDDIHLIPDND 120 Query: 124 T---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 + +L+ + N + + ++ P L SRL V K+ + DD L Sbjct: 121 SIRVELWQLFNDFYTAGKKIAISGLYPPKELPNLDGHLTSRLLWGLVSKLDISGDDSLRM 180 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 ++ K+ DRQI + +++ AY++ + R + + + + AL I+ A E L Sbjct: 181 ILQKLAEDRQIVVPEEVIAYLLVHLHRDIPTLLDALQLIHHHALMTKKKISLRQAKEALS 240 Query: 241 E 241 Sbjct: 241 R 241 >gi|117925602|ref|YP_866219.1| regulatory inactivation of DnaA Hda protein [Magnetococcus sp. MC-1] gi|117609358|gb|ABK44813.1| regulatory inactivation of DnaA Hda protein [Magnetococcus sp. MC-1] Length = 247 Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 54/243 (22%), Positives = 102/243 (41%), Gaps = 26/243 (10%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 QL +FP +S ++L+V + A+ + + +IL G +G+GK+ L Sbjct: 3 TGSAQLLIAFPLDPVLSWENLVVGAHNTIAIHGVRQLEAAKVPGLILTGAAGAGKTHLLQ 62 Query: 83 IWSDKSRSTRFSNIAKSLDSILIDTR-----------------------KPVLLEDIDLL 119 R+ + A LD + + +++++LL Sbjct: 63 AAVASVRAQYGEHAAVYLDLATLSKHLENQPKAHSEALLSRFIDRYGSCRLAAIDELELL 122 Query: 120 D---FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 + + ++ N + LL R P + DL SRL V+ I PD+ Sbjct: 123 EHAVGLQEGVLYLYNRLRVAGGHLLGAGREDPSTMSGLRDDLRSRLLWGPVLHIDEPDEV 182 Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236 L +++ KM ADRQ+ + + + +++ R+ RS+ + + ++D AL + +T LA Sbjct: 183 ALGQIMDKMAADRQLRLSEAVRHFLLLRLPRSVPVFAQTIQRLDEEALRQQRALTVPLAK 242 Query: 237 EVL 239 EVL Sbjct: 243 EVL 245 >gi|298368961|ref|ZP_06980279.1| DnaA regulatory inactivator Hda [Neisseria sp. oral taxon 014 str. F0314] gi|298282964|gb|EFI24451.1| DnaA regulatory inactivator Hda [Neisseria sp. oral taxon 014 str. F0314] Length = 225 Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 91/223 (40%), Gaps = 11/223 (4%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL F F D L ++ + V ++ + + + + G G+GKS L W Sbjct: 6 QLIFDFATRDYPGFDKFL-GTSNAELVYVL---QNRHGQFIYVWGEQGAGKSHLLQAWVA 61 Query: 87 KS-----RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL-FHIINSIHQYDSSL 140 ++ + L +++ + ++ I+ L + L F + N Sbjct: 62 QALGMGKNAVYIDAATSPLTESVLEA-DYLAIDQIEKLGNEEQALLFAVFNRFRNSGKGF 120 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L+ + V DL +R+ V ++ D +V M A RQ+ ID ++ Y Sbjct: 121 LLLSSEHTPQQLVIREDLRTRMAYCLVYEVKPLTDQEKIDALVSMAAARQVTIDLEIFEY 180 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 ++ R + +++D +DN A++ G IT L ++LK+ + Sbjct: 181 LLNHWRRDMDSLMQMLDTLDNYAVTMGKRITLPLLRQLLKQQE 223 >gi|77360843|ref|YP_340418.1| regulatory factor involved in inactivation of DnaA [Pseudoalteromonas haloplanktis TAC125] gi|76875754|emb|CAI86975.1| putative regulatory factor involved in inactivation of DnaA [Pseudoalteromonas haloplanktis TAC125] Length = 228 Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 95/225 (42%), Gaps = 16/225 (7%) Query: 28 LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87 L +D L S ++ + + + L G SGKS L + Sbjct: 7 LPDDETFTSYFGGEDSLEVSHLKDSFSKLSQ----SFQYTYLCGLGDSGKSHLLYATCIQ 62 Query: 88 SRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQ 135 ++ SN+ S+ ++ ++ + ++D+ L+ + + LF+ N ++ Sbjct: 63 AQERGLSNMLLSMREVIDFGPMVLEGLEALDVLCIDDVHLVAGDDAWEKALFNFFNRFNE 122 Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195 L++TA P + LPDL SRLK T ++I DD + +VK R + + Sbjct: 123 PKKMLVVTADLLPDMLNISLPDLESRLKWGTTLQIRSMSDDDKAQALVKRTKMRGLELSD 182 Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + A +++ R+ R + ++DK+D+ +++ +T LK Sbjct: 183 ECARFLLTRLSRDMRTLLDVLDKLDHASMAAQRKLTIPFIKSTLK 227 >gi|119775051|ref|YP_927791.1| DNA replication initiation factor [Shewanella amazonensis SB2B] gi|119767551|gb|ABM00122.1| regulatory inactivation of DnaA Hda protein [Shewanella amazonensis SB2B] Length = 241 Score = 169 bits (428), Expect = 4e-40, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 93/235 (39%), Gaps = 18/235 (7%) Query: 22 KNKEEQLFFS--FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS-RVVILVGPSGSGKS 78 ++ QL P + + ++ + + S S + + L GP SG++ Sbjct: 8 QHPPLQLSLPVHLPDDETFTS--YYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRT 65 Query: 79 CLANIWSDKSRST---------RFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQL 126 L + ++ + ++ + ++D+D + + + + Sbjct: 66 HLIHAACARANELERRSFYIPLGIHASISTALLEGLEQFDLICIDDVDAVAGHPLWEEAI 125 Query: 127 FHIINSIHQY-DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 F + N + + SL+++A P+ G LPDL SR+ ++ DD + + Sbjct: 126 FDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRR 185 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 A R + + + + +++ RM R L ++D++D ++ +T E+L+ Sbjct: 186 AAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQRKLTIPFVKEMLR 240 >gi|253699565|ref|YP_003020754.1| Chromosomal replication initiator DnaA [Geobacter sp. M21] gi|251774415|gb|ACT16996.1| Chromosomal replication initiator DnaA [Geobacter sp. M21] Length = 234 Score = 168 bits (427), Expect = 5e-40, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 86/233 (36%), Gaps = 19/233 (8%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW-PSWPSRVVILVGPSGSGKSCLANI- 83 Q F FP ++ +V + A + ++ + GP GSGK+ L Sbjct: 1 MQFIFDFPVVPRFGFENFVVCGGNKTAYQFAKKLVEDSTENLLYIYGPEGSGKTHLLTAL 60 Query: 84 -------------WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLF 127 ++ S L D ++L+D+ LL +L+ Sbjct: 61 SNSIDGKYFSFRDAGSLYGASVGSEDPSRLAEHFQDA-AALVLDDLHLLPNLQEVRVELW 119 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 + N+ + + ++ P L SRL V ++ + DD+ ++ K+ Sbjct: 120 ELFNAFYSSGRKIAISGLMPPKELPHLDGHLTSRLLWGLVARMDVSDDESRRMILKKLAE 179 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 DRQ+ + + ++ R+ R + ++ ++ A+S ++ LA E + Sbjct: 180 DRQMALPDDVIDEMLLRVRRDIPSLVYALENINRYAISTKRKVSLRLAKEAFR 232 >gi|251791830|ref|YP_003006550.1| DnaA regulatory inactivator Hda [Aggregatibacter aphrophilus NJ8700] gi|247533217|gb|ACS96463.1| DnaA regulatory inactivator Hda [Aggregatibacter aphrophilus NJ8700] Length = 234 Score = 168 bits (426), Expect = 6e-40, Method: Composition-based stats. Identities = 45/190 (23%), Positives = 82/190 (43%), Gaps = 13/190 (6%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI---------LIDTRKPVLLE 114 + L G GSGKS L + + + L+ ++ + V L+ Sbjct: 44 QQFFYLWGNKGSGKSHLLKGVCQHYLAQQRPALYVPLNKAQYFSPAVLENLEQQALVCLD 103 Query: 115 DIDLLDFN---DTQLFHIINSIHQYDSSLL-MTARTFPVSWGVCLPDLCSRLKAATVVKI 170 D+ + N + +F +IN + + +LL M+A P + V LPDL SRL V ++ Sbjct: 104 DLQAVIGNAEWEVAIFDLINRVRETGRTLLIMSADQSPANLPVQLPDLASRLTWGEVYQL 163 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 + +D V+ K R I + + A ++ +R+ER + ++K+D +L + Sbjct: 164 APLNDKQKIDVLQKAAYQRGIELPDETANFLFKRLERDMKTLFNALEKLDQASLQAQRKL 223 Query: 231 TRSLAAEVLK 240 T E+L Sbjct: 224 TIPFVKEILA 233 >gi|197119682|ref|YP_002140109.1| DnaA regulatory inactivator Hda [Geobacter bemidjiensis Bem] gi|197089042|gb|ACH40313.1| DnaA regulatory inactivator Hda [Geobacter bemidjiensis Bem] Length = 234 Score = 168 bits (426), Expect = 7e-40, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 92/232 (39%), Gaps = 17/232 (7%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW-PSWPSRVVILVGPSGSGKSCLANIW 84 QL F FP ++ +V + A + ++ + GP GSGK+ L Sbjct: 1 MQLIFDFPVVPRFGFENFVVCGGNKTAYQFAKKLVEDPTENLLYIYGPEGSGKTHLLTAL 60 Query: 85 SDKSRSTRFS-------------NIAKSLDSILIDTRKPVLLEDIDLL-DFNDT--QLFH 128 S+ FS + S + ++L+D+ LL + ++ +L+ Sbjct: 61 SNSIDGRYFSFRDAGSLYGSSVGSEGPSRLAEHFQGAAALVLDDLHLLPNLHEVRVELWE 120 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 + N+ + + ++ P L SRL V ++ + DD+ ++ K+ D Sbjct: 121 LFNAFYSSGRKIAISGLMPPKELPHLDGHLTSRLLWGLVARMDVSDDESRRMILKKLAED 180 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 RQ+ + + ++ R+ R + ++ ++ A+S ++ LA E + Sbjct: 181 RQMALPDDVIDEMLLRVRRDIPSLVYALENINRYAISTKRKVSLRLAKEAFR 232 >gi|119477092|ref|ZP_01617328.1| hypothetical protein GP2143_02179 [marine gamma proteobacterium HTCC2143] gi|119449455|gb|EAW30693.1| hypothetical protein GP2143_02179 [marine gamma proteobacterium HTCC2143] Length = 252 Score = 168 bits (425), Expect = 8e-40, Method: Composition-based stats. Identities = 50/228 (21%), Positives = 86/228 (37%), Gaps = 14/228 (6%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 EQL + + D+ + + S R V L G GSG+S L Sbjct: 25 EQLPLAVQLRDDATFDNFYSGD-NALLLDTLRKQLSDGERYVYLFGREGSGRSHLLQAAC 83 Query: 86 DKSRSTRFSNIAKSLDSIL----------IDTRKPVLLEDIDLL---DFNDTQLFHIINS 132 + + I L + ++ + V L+D+D + QLFH+ N Sbjct: 84 HHADKNGSNAIYLPLSELGEYPPEELFDGLEYQSLVCLDDVDAVIDKGLWQRQLFHLFNR 143 Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 + LL++AR + L DL SRL TV ++ +DD I R + Sbjct: 144 LSDAQIPLLISARCAVRDLNIELQDLASRLSWGTVFQLHNLNDDQRTATIKLRAERRGLL 203 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + ++A YI R R ++D +D+ +L+ +T + + Sbjct: 204 MGDEVAQYIYNRCRRDTQALLSVLDTLDSASLTYQRRLTVPFVKKTMN 251 >gi|148263480|ref|YP_001230186.1| chromosomal replication initiator, DnaA [Geobacter uraniireducens Rf4] gi|146396980|gb|ABQ25613.1| regulatory inactivation of DnaA Hda protein [Geobacter uraniireducens Rf4] Length = 241 Score = 168 bits (425), Expect = 8e-40, Method: Composition-based stats. Identities = 48/241 (19%), Positives = 92/241 (38%), Gaps = 25/241 (10%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWP--SWPSRVVILVGPSGSGKSCL--- 80 QL F FP D+ +V + + A ++ L G +GSGK+ L Sbjct: 1 MQLIFDFPVNPKFGFDNFVVCAGNKTAYHFARQLAEGDGTENLLYLYGSTGSGKTHLLTA 60 Query: 81 -ANIWSDKSRSTRFS----------------NIAKSLDSILIDTRKPVLLEDIDLLDFND 123 AN ++ S + + +L++DI L+ ND Sbjct: 61 MANSICREAGLDAIPSISFKNIDELYRGNYPAEEPSKLAERFNNAPALLVDDIHLIPDND 120 Query: 124 T---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 +L+ + N + + +T P L SRL V K+ + DD L Sbjct: 121 NIRVELWQLFNDFYTAGKKIAITGLNPPKELPHLDGHLTSRLLWGLVTKLDISGDDSLRM 180 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 ++ K+ DRQ+ + + + A+++ + R + ++++ A++ I+ A E L+ Sbjct: 181 ILQKLAEDRQVALPEDVIAHLLVHIRRDIPSLLNALEQIRRHAIATKRKISLRQAKEALQ 240 Query: 241 E 241 Sbjct: 241 R 241 >gi|152979518|ref|YP_001345147.1| chromosomal replication initiator DnaA [Actinobacillus succinogenes 130Z] gi|150841241|gb|ABR75212.1| Chromosomal replication initiator DnaA [Actinobacillus succinogenes 130Z] Length = 230 Score = 168 bits (425), Expect = 9e-40, Method: Composition-based stats. Identities = 43/189 (22%), Positives = 90/189 (47%), Gaps = 13/189 (6%) Query: 64 SRVVILVGPSGSGKSCLA----NIWSDKSRSTRFSNIAKSLDSIL-----IDTRKPVLLE 114 + + G G GKS L + + ++R+ + +AKS+ ++ ++ V L+ Sbjct: 40 QQFFYIWGEEGCGKSHLLKAATHQFFGENRTALYVPLAKSVYFSPAVLDNLEQQELVCLD 99 Query: 115 DIDLLDFNDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKI 170 D+ + N+ +F + N I ++ +LL+ +A P S V LPDL SRL + ++ Sbjct: 100 DLQCVIGNEEWEVAVFDLFNRIKEHGKTLLIVSANQSPNSLPVQLPDLASRLSWGEIYQL 159 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 DD + + R I + + A+++++R++R++ ++D++D +L + Sbjct: 160 HALDDQQKITALQQNARQRGIELPDETASFLIKRLDRNMHNLFAVLDQLDKASLQAQRKL 219 Query: 231 TRSLAAEVL 239 T E L Sbjct: 220 TIPFVKETL 228 >gi|212211775|ref|YP_002302711.1| DnaA-related protein [Coxiella burnetii CbuG_Q212] gi|212010185|gb|ACJ17566.1| DnaA-related protein [Coxiella burnetii CbuG_Q212] Length = 237 Score = 168 bits (425), Expect = 9e-40, Method: Composition-based stats. Identities = 38/226 (16%), Positives = 78/226 (34%), Gaps = 11/226 (4%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 +QL + + + I L + + L G G++ L Sbjct: 3 DQLPLRVQLREETTFANFYGGNNITLLKALNELLEGKGESFIYLWGEPSVGRTHLLQACC 62 Query: 86 DKSRSTRFSNIAKSLDSILI--------DTRKPVLLEDIDLLDFN---DTQLFHIINSIH 134 + + +L + + +++ + ++DID + + L H N + Sbjct: 63 HTMNNRSLEAMYLALKTPQLAPSILQGLESKPLICIDDIDAVLSQPDWEEALLHFYNRVR 122 Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194 + L++ P L DL SRL V ++ D K + DR + Sbjct: 123 ESQVKLVIAGNYVPPQLNCQLADLRSRLSWGLVFQVIGLTDAEKIKALQMRAHDRGFELS 182 Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 ++ ++++ R + L+DK+D +L +T EVL Sbjct: 183 DEVGQFLLRHYPRDMSALFNLLDKLDQASLIAQRKLTVPFVKEVLN 228 >gi|157961790|ref|YP_001501824.1| DNA replication initiation factor [Shewanella pealeana ATCC 700345] gi|157846790|gb|ABV87289.1| Chromosomal replication initiator DnaA [Shewanella pealeana ATCC 700345] Length = 236 Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 90/234 (38%), Gaps = 18/234 (7%) Query: 23 NKEEQLFFS--FPRCLGISRDDLLVHSAIEQAVRLIDSWPSW-PSRVVILVGPSGSGKSC 79 N QL P + + ++ ++ + + V L GP SG++ Sbjct: 4 NSPLQLSLPVHLPDDETFNS--YYPATGNDELIQSLQECAEGKSNGAVFLWGPEKSGRTH 61 Query: 80 LANIWSDKSRSTR---------FSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLF 127 L + + + ++ V ++D+D + + + +F Sbjct: 62 LMHAACAHANDLGRSSFYIPLGIHASISTALLEGLEKLDLVCIDDVDAIAGHPLWEEAIF 121 Query: 128 HIINSIHQYD-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 + N I + SL+++A P G LPDL SR++ ++ D+ + + Sbjct: 122 DLYNRISEQKTCSLVVSASVSPSDSGFSLPDLVSRMQWGLNYQLQPMADEEKLAALQRRA 181 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 A R + + + + +++ R+ R L ++D++D ++ +T E+L+ Sbjct: 182 AMRGLQLPEDVGRFLLNRLARDLRTLFDVLDRLDKASMVHQRKLTIPFIKEMLR 235 >gi|262089713|gb|ACY24808.1| DnaA family protein [uncultured organism] Length = 237 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 42/231 (18%), Positives = 86/231 (37%), Gaps = 16/231 (6%) Query: 25 EEQLFFSFPRCLGISRDDLLV--HSAIEQAVRLIDSWPSWP-SRVVILVGPSGSGKSCLA 81 +QL S + ++ H+ V+ + + L G G G + L Sbjct: 5 PQQLSLSVNLNDDATFENFYAPAHTHNAMVVQGLRDQLDGSGESFIYLWGAPGCGLTHLL 64 Query: 82 NIWSDKSRSTRFSNIAKSLDSILIDTRKPVL--LEDIDLLDFN-----------DTQLFH 128 +++ S L ++ + LE +DL+ + + +FH Sbjct: 65 QAACHQAQEMGSSVQYLPLRDLVGYAPDDLFTGLEMVDLVCLDCLPTIAGRADWELAIFH 124 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 + N + LL+ A P + L DL SRL+ ++ D+ ++ + Sbjct: 125 LYNRLRDAGKCLLVAAEHSPRELALSLEDLRSRLQWGLTYQVHSLTDEDKQQALQMRARA 184 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + + +A YI+QR+ R + ++D+ +L+ +T +VL Sbjct: 185 RGLELSDDVAQYIIQRLPRDTNELFWQLARLDHASLAEQRKLTIPFVKKVL 235 >gi|254283923|ref|ZP_04958891.1| DnaA regulatory inactivator Hda [gamma proteobacterium NOR51-B] gi|219680126|gb|EED36475.1| DnaA regulatory inactivator Hda [gamma proteobacterium NOR51-B] Length = 237 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 60/231 (25%), Positives = 96/231 (41%), Gaps = 12/231 (5%) Query: 18 NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGK 77 D+P + QL + + D+ + E AV + L G +GSGK Sbjct: 2 TDRPFSTAGQLPLAIALDAEATFDNFAADTTSELAVDWLKDNHESAGG--YLFGGAGSGK 59 Query: 78 SCLANIWSDKSRS-TRFSNIAKSLDSIL------IDTRKPVLLEDIDLLDFN---DTQLF 127 S L + + + +A+ D ID V L+DID + + + LF Sbjct: 60 SHLLQASCAATTAPALYIPLAEFADYPAAQVLDGIDALSLVALDDIDRIAGDSSWEEALF 119 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N + LL++A + L DL SRL + ++ PDDD LE+++ Sbjct: 120 HAFNLCVGSGTRLLVSASSTASQIDFTLADLQSRLGSLAAFRLPRPDDDSLERMLDLRAG 179 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238 R I + ++ YIV R R L++K+D AL+R +T L E+ Sbjct: 180 HRGITLSAEVKRYIVTRAPRDSHAVMALLEKLDTAALARHRLVTIPLIKEL 230 >gi|29655022|ref|NP_820714.1| DnaA-related protein [Coxiella burnetii RSA 493] gi|161830954|ref|YP_001597555.1| DnaA-homolog protein Hda [Coxiella burnetii RSA 331] gi|29542291|gb|AAO91228.1| DnaA-related protein [Coxiella burnetii RSA 493] gi|161762821|gb|ABX78463.1| DnaA-homolog protein Hda [Coxiella burnetii RSA 331] Length = 237 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 38/226 (16%), Positives = 77/226 (34%), Gaps = 11/226 (4%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 +QL + + + I L + + L G G++ L Sbjct: 3 DQLPLRVQLREETTFANFYGGNNITLLKALNELLEGKGESFIYLWGEPSVGRTHLLQACC 62 Query: 86 DKSRSTRFSNIAKSLDSILI--------DTRKPVLLEDIDLLDFN---DTQLFHIINSIH 134 + + L + + +++ + ++DID + + L H N + Sbjct: 63 HTMNNRSLEAMYLPLKTPQLAPSILQGLESKPLICIDDIDAVLSQPDWEEALLHFYNRVR 122 Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194 + L++ P L DL SRL V ++ D K + DR + Sbjct: 123 ESQVKLVIAGNYVPPQLNCQLADLRSRLSWGLVFQVIGLTDAEKIKALQMRAHDRGFELS 182 Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 ++ ++++ R + L+DK+D +L +T EVL Sbjct: 183 DEVGQFLLRHYPRDMSALFNLLDKLDQASLIAQRKLTVPFVKEVLN 228 >gi|262089788|gb|ACY24881.1| DnaA family protein [uncultured organism] Length = 237 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 42/231 (18%), Positives = 86/231 (37%), Gaps = 16/231 (6%) Query: 25 EEQLFFSFPRCLGISRDDLLV--HSAIEQAVRLIDSWPSWP-SRVVILVGPSGSGKSCLA 81 +QL S + ++ H+ V+ + + L G G G + L Sbjct: 5 PQQLSLSVNLNDDATFENFYAPAHTHNAMVVQGLRDQLDGSGESFIYLWGAPGCGLTHLC 64 Query: 82 NIWSDKSRSTRFSNIAKSLDSILIDTRKPVL--LEDIDLLDFN-----------DTQLFH 128 +++ S L ++ + LE +DL+ + + +FH Sbjct: 65 RAACHQAQEMGSSVQYLPLRDLVGYAPDDLFTGLEMVDLVCLDCLPTIAGRADWELAIFH 124 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 + N + LL+ A P + L DL SRL+ ++ D+ ++ + Sbjct: 125 LYNRLRDAGKCLLVAAEHSPRELALSLEDLRSRLQWGLTYQVHSLTDEDKQQALQMRARA 184 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + + +A YI+QR+ R + ++D+ +L+ +T +VL Sbjct: 185 RGLELSDDVAQYIIQRLPRDTNELFWQLARLDHASLAEQRKLTIPFVKKVL 235 >gi|110834432|ref|YP_693291.1| hypothetical protein ABO_1571 [Alcanivorax borkumensis SK2] gi|110647543|emb|CAL17019.1| conserved hypothetical protein [Alcanivorax borkumensis SK2] Length = 245 Score = 166 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 53/227 (23%), Positives = 88/227 (38%), Gaps = 13/227 (5%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 QL + G + D+ AV + R G GKS L Sbjct: 18 SAQLPLALQLREGNALDNFQSGP-NGAAVAGLYEAVQGADRQAFFWAGDGQGKSHLLEGA 76 Query: 85 SDKSRSTRFSNIAKSLDSILI---------DTRKPVLLEDIDLLDF---NDTQLFHIINS 132 ++ I+ + + ++D L + LFH+ N Sbjct: 77 VRLAQHNGLDACLLPAREIIPLVPEVLESMEQFGLLAIDDCQLFAGLPAWEEALFHLYNR 136 Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 + LL+TA P + G+ LPDL +RL A V ++ +DD L+ ++ + R + Sbjct: 137 LMSLGGRLLVTANASPAAMGLMLPDLATRLAAGPVYRLMSLEDDDLQALLQERAKARGLR 196 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 ++ ++A YIV R ERS L+ K+D LAL++ +T L Sbjct: 197 LEPEVAHYIVLRSERSAGALMALLAKLDRLALAQQRPVTIPFVKYAL 243 >gi|24374406|ref|NP_718449.1| DNA replication initiation factor [Shewanella oneidensis MR-1] gi|24348974|gb|AAN55893.1|AE015726_1 conserved hypothetical protein [Shewanella oneidensis MR-1] Length = 236 Score = 166 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 92/236 (38%), Gaps = 18/236 (7%) Query: 21 PKNKEEQLFFS--FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP-SRVVILVGPSGSGK 77 P N QL P + + ++ ++ + + + + GP SG+ Sbjct: 2 PLNSPLQLSLPVYLPDDETFNS--YYPAAGNDELIQKLRANAEGHGEAAIYVWGPVKSGR 59 Query: 78 SCLANIWSDKSRST---------RFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQ 125 + L + + + ++ + ++D+D + + + Sbjct: 60 THLMHAACAHANELDRRSFYLPLGIHASISTALLEGLEQLDLICIDDVDDIAGHPVWEEA 119 Query: 126 LFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 +F + N + + +L+++ R+ P G LPDL SR++ ++ DD + + Sbjct: 120 IFDLYNRVAENKRCALVVSGRSAPADAGFLLPDLVSRMQWGLNYQLQPMADDEKLAALQR 179 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 A R + + + + +++ RM R L ++DK+D +L +T A E+L Sbjct: 180 RAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDKLDKASLVHQRKLTIPFAKEMLH 235 >gi|113969917|ref|YP_733710.1| DNA replication initiation factor [Shewanella sp. MR-4] gi|114047153|ref|YP_737703.1| DNA replication initiation factor [Shewanella sp. MR-7] gi|117920090|ref|YP_869282.1| DNA replication initiation factor [Shewanella sp. ANA-3] gi|113884601|gb|ABI38653.1| regulatory inactivation of DnaA Hda protein [Shewanella sp. MR-4] gi|113888595|gb|ABI42646.1| regulatory inactivation of DnaA Hda protein [Shewanella sp. MR-7] gi|117612422|gb|ABK47876.1| regulatory inactivation of DnaA Hda protein [Shewanella sp. ANA-3] Length = 236 Score = 166 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 92/236 (38%), Gaps = 18/236 (7%) Query: 21 PKNKEEQLFFS--FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP-SRVVILVGPSGSGK 77 P N QL P + + ++ ++ + + + + GP SG+ Sbjct: 2 PLNSPLQLSLPVYLPDDETFNS--YYPAAGNDELIQKLRANAEGQGEAAIYVWGPVKSGR 59 Query: 78 SCLANIWSDKSRST---------RFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQ 125 + L + + + ++ + ++D+D + + + Sbjct: 60 THLMHAACAHANELDRRSFYLPLGIHASISTALLEGLEQLDLICIDDVDDIAGHPIWEEA 119 Query: 126 LFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 +F + N + + +L+++ R+ P G LPDL SR++ ++ DD + + Sbjct: 120 IFDLYNRVAENKRCALVVSGRSAPADAGFLLPDLVSRMQWGLNYQLQPMADDEKLAALQR 179 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 A R + + + + +++ RM R L ++DK+D +L +T A E+L Sbjct: 180 RAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDKLDKASLVHQRKLTIPFAKEMLH 235 >gi|224824666|ref|ZP_03697773.1| DnaA regulatory inactivator Hda [Lutiella nitroferrum 2002] gi|224603159|gb|EEG09335.1| DnaA regulatory inactivator Hda [Lutiella nitroferrum 2002] Length = 224 Score = 166 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 48/223 (21%), Positives = 86/223 (38%), Gaps = 10/223 (4%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 +QL + D+ V + + + R + L G GSGK+ L W Sbjct: 2 DQLILDLTPTPLPAFDNF-VAERNREVITALTHPGD--ERFIYLWGEPGSGKTHLLQAWI 58 Query: 86 DKS----RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT-QLFHIINSIHQYD-SS 139 + R++ + + + + ++ +D L +D LF NS+ + S Sbjct: 59 AHAETLGRASIYLDGQREHLPDFAREASFIAVDHVDDLAPDDQITLFSFYNSLKEGGESR 118 Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199 LLM R P++ V DL +RL V ++ D + A+RQ+ I + Sbjct: 119 LLMAGRLPPMAL-VVRDDLRTRLGWGLVFEVKPLSDADKLAALHAHAAERQLAIPDDVFR 177 Query: 200 YIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 Y++ R L ++D +D +L+ IT L +L Sbjct: 178 YLLTHWRRDLSSLIGMLDLLDRYSLALRRPITVPLVKNILHTA 220 >gi|153208226|ref|ZP_01946636.1| DnaA-homolog protein Hda [Coxiella burnetii 'MSU Goat Q177'] gi|165923943|ref|ZP_02219775.1| DnaA-homolog protein Hda [Coxiella burnetii RSA 334] gi|212217942|ref|YP_002304729.1| DnaA-related protein [Coxiella burnetii CbuK_Q154] gi|120576131|gb|EAX32755.1| DnaA-homolog protein Hda [Coxiella burnetii 'MSU Goat Q177'] gi|165916599|gb|EDR35203.1| DnaA-homolog protein Hda [Coxiella burnetii RSA 334] gi|212012204|gb|ACJ19584.1| DnaA-related protein [Coxiella burnetii CbuK_Q154] Length = 237 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 39/226 (17%), Positives = 77/226 (34%), Gaps = 11/226 (4%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 +QL + + + I L + + L G G++ L Sbjct: 3 DQLPLRVQLREETTFANFYGGNNITLLKALNELLEGKGESFIYLWGEPSVGRTHLLQACC 62 Query: 86 DKSRSTRFSNIAKSLDSILI--------DTRKPVLLEDIDLLDFN---DTQLFHIINSIH 134 + + SL + + +++ + ++DID + + L H N + Sbjct: 63 HTMNNRSLEAMYLSLKTPQLAPSILQGLESKPLICIDDIDAVLSQPDWEEALLHFYNRVR 122 Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194 + L++ P L DL SRL V ++ D K + DR + Sbjct: 123 ESQVKLVIAGNYVPPQLNCQLTDLRSRLSWGLVFQVIGLTDAEKIKALQMRAHDRGFELS 182 Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + ++++ R + L+DK+D +L +T EVL Sbjct: 183 DGVGQFLLRHYPRDMSALFNLLDKLDQASLIAQRKLTVPFVKEVLN 228 >gi|261365987|ref|ZP_05978870.1| DnaA regulatory inactivator Hda [Neisseria mucosa ATCC 25996] gi|288565417|gb|EFC86977.1| DnaA regulatory inactivator Hda [Neisseria mucosa ATCC 25996] Length = 222 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 89/223 (39%), Gaps = 11/223 (4%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL F F D L + + V ++ + + G G+GKS L W Sbjct: 3 QLIFDFAERGYPGFDKFL-GTENAELVYVLQHKHD---PFIYVWGEEGAGKSHLLRAWVA 58 Query: 87 KS-----RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL-FHIINSIHQYDSSL 140 ++ ++ A L + + + ++ I+ L + L F + N Sbjct: 59 QALDAGKKAVYIDASATPLTEAAFEA-EYLAIDQIEKLGNEEQALLFAVFNRFRNSGKGF 117 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L+ + V DL +R+ V ++ D +V M A RQ+ ID ++ Y Sbjct: 118 LLLSSEHTPQQLVIREDLRTRMAYCLVYEVKPLTDQEKIDALVSMAAARQVTIDPEIFEY 177 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 ++ R + +++D +DN A++ G IT L ++LK+ + Sbjct: 178 LLNHWRRDMDSLMQMLDTLDNYAVTMGKRITLPLLRQLLKQQE 220 >gi|300940261|ref|ZP_07154858.1| DnaA regulatory inactivator Hda [Escherichia coli MS 21-1] gi|300454902|gb|EFK18395.1| DnaA regulatory inactivator Hda [Escherichia coli MS 21-1] Length = 270 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 86/231 (37%), Gaps = 13/231 (5%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 N QL + L + S + L G+G+S L + Sbjct: 39 NTPAQLSLPLYLPDDETFASFWPGDNSSLLAALQNVLRQEHSGYIYLWAREGAGRSHLLH 98 Query: 83 IWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHII 130 + + + + K + ++ V +++I+ + ++ +F + Sbjct: 99 AACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCIDNIECIAGDELWEMAIFDLY 158 Query: 131 NSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N I + LL+T P + LPDL SRL + K+ D+ + + R Sbjct: 159 NRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLR 218 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + + ++++R++R + +D++D +++ +T E+LK Sbjct: 219 GFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 269 >gi|194290639|ref|YP_002006546.1| dnaa regulatory inactivator hda [Cupriavidus taiwanensis LMG 19424] gi|193224474|emb|CAQ70485.1| regulatory factor involved in inactivation of DnaA; putative ATPase [Cupriavidus taiwanensis LMG 19424] Length = 235 Score = 166 bits (420), Expect = 4e-39, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 95/231 (41%), Gaps = 15/231 (6%) Query: 24 KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWP------SWPSRVVILVGPSGSGK 77 + +QL + ++ +V ++ +AV+ + P R++ L G G G+ Sbjct: 4 RPKQLSLELGSPPPSTFENFVV-ASNREAVQRLRELPPALAQEHASDRLIYLWGEVGCGR 62 Query: 78 SCLANIWSDKS-----RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD-FNDTQLFHIIN 131 + L + + R S D + + ++D++LLD +F + N Sbjct: 63 THLLHAVCEAGPQHGIRCRYLSPHHPLSDFLFDPWCQLYTVDDVELLDEARQIAVFSLYN 122 Query: 132 SIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 + + + L++ P + V DL +RL V +++ DD + ++ +R Sbjct: 123 EVRAHGRTALVVAGGLAPRAMPVR-EDLRTRLGWGLVYQVAPLSDDDKKAAVLHAARERG 181 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + + ++ ++V R R + L+D +D +L R +T L E+ E Sbjct: 182 LQLSPEITHWLVTRHYRDMPSLMALLDALDTYSLERKRPVTLPLLREMFAE 232 >gi|307823566|ref|ZP_07653795.1| DnaA regulatory inactivator Hda [Methylobacter tundripaludum SV96] gi|307735551|gb|EFO06399.1| DnaA regulatory inactivator Hda [Methylobacter tundripaludum SV96] Length = 234 Score = 166 bits (420), Expect = 4e-39, Method: Composition-based stats. Identities = 45/232 (19%), Positives = 84/232 (36%), Gaps = 12/232 (5%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 EQL F + DD + E L + + L G SG GK+ L Sbjct: 2 AEQLPLHFEFRANQTFDDFFPGANHEIITHLQQCIAGLGEQQIFLWGKSGQGKTHLLQAC 61 Query: 85 SDKSRSTRFSNIAKSLDSILI---------DTRKPVLLEDIDLLDFN---DTQLFHIINS 132 ++++ S+ L + D V ++I+ + N + F+ N Sbjct: 62 CHRAQNQNLSSFYFDLSQAELPDPSLLNGLDEYDVVCFDNIERIAGNATWELAFFNFFNQ 121 Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 L+++A + P + LPDL +RL +KI D ++ Sbjct: 122 HRDRGHKLIVSASSAPNEIAIQLPDLKTRLNWGLSLKIQPLTDSDRIAALIFKADQMGFE 181 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 I + +++ +R L L++K+D +L+ +T ++L E Sbjct: 182 IAPQAGRFLLTHYDRDLASLWALLEKLDRASLAAKRKLTLPFLKQILNEDSH 233 >gi|238898965|ref|YP_002924647.1| regulatory factor involved in inactivation of DnaA [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466725|gb|ACQ68499.1| regulatory factor involved in inactivation of DnaA [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 246 Score = 166 bits (420), Expect = 4e-39, Method: Composition-based stats. Identities = 39/231 (16%), Positives = 87/231 (37%), Gaps = 13/231 (5%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 N QL + + + R + GSG+S L + Sbjct: 15 NNPTQLPLPLFLPDDATFSGFYPGDNSALLAAIESALCDSHGRYIYFWSKQGSGRSHLLH 74 Query: 83 IWSD----KSRSTRFSNIAKSL-----DSILIDTRKPVLLEDIDLLDFN---DTQLFHII 130 + ++ + + K ++ + +++I+ + + + +FH+ Sbjct: 75 AACSTLSKQGKAVGYVPLDKRAYFTVEVLEGMEQLALICIDNIEHIVGDIEWEMGIFHLY 134 Query: 131 NSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N I + D + LLMT P + LPDL SRL + K+ DD + R Sbjct: 135 NRILEKDHTCLLMTGDRPPRQLHLHLPDLASRLDWGQIYKLQPLSDDDKVLSLQLRAKLR 194 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + +++ ++++R++R + +D++D ++ +T E+L+ Sbjct: 195 GFELPEEVGRFMLKRLDREMPSLFMALDRLDKASIRAQRKLTIPFVKEILR 245 >gi|254513812|ref|ZP_05125873.1| DnaA regulatory inactivator Hda [gamma proteobacterium NOR5-3] gi|219676055|gb|EED32420.1| DnaA regulatory inactivator Hda [gamma proteobacterium NOR5-3] Length = 235 Score = 165 bits (419), Expect = 4e-39, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 93/233 (39%), Gaps = 11/233 (4%) Query: 17 KNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSG 76 + N+ QL + D+ L A+ + + P + L G +G G Sbjct: 4 DSATASNQSPQLPLQIGLQDETTFDNFLAREALAPLLDSMSRPHCEPLQF--LHGAAGEG 61 Query: 77 KSCLANIWSDKSRSTRFSNIAKSLDSIL------IDTRKPVLLEDIDLLDFN---DTQLF 127 KS L + + +A L+S +++ + L+D+D++ + LF Sbjct: 62 KSHLLQALCHATDGAVYLPLAVLLESPPSDLFQDLESSSLLALDDLDVIAGRREWEEALF 121 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H+IN L M AR G+ L DL SRL +S DD + ++ Sbjct: 122 HLINRARAAQCPLWMAARRPANDLGLQLADLSSRLAGGVTWALSAADDSDKQAILQFRAR 181 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + + + +A Y+ R R+L + +D++D +L +T L EV+ Sbjct: 182 RKGLVLSESVAHYVCSRESRALADLMETLDRLDRASLQLQRPLTVPLIREVMA 234 >gi|114319679|ref|YP_741362.1| regulatory inactivation of DnaA Hda protein [Alkalilimnicola ehrlichii MLHE-1] gi|114226073|gb|ABI55872.1| regulatory inactivation of DnaA Hda protein [Alkalilimnicola ehrlichii MLHE-1] Length = 245 Score = 165 bits (419), Expect = 4e-39, Method: Composition-based stats. Identities = 49/248 (19%), Positives = 94/248 (37%), Gaps = 17/248 (6%) Query: 11 FVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWP-SWPSRVVIL 69 V D P +QL S D V A +QA+ + + R++ L Sbjct: 1 MVADSDNTSAP--PVQQLALDIRWTDIASLDSF-VAGANQQALDAVRRAAMGFGDRLLFL 57 Query: 70 VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS----------ILIDTRKPVLLEDIDLL 119 G GKS L ++ F L+ +++ + L+D+ +L Sbjct: 58 YGQGPVGKSHLLQAACREAGERGFKAAYLPLNEFQGMPPGSVLAGMESMDLLALDDLQVL 117 Query: 120 DFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 + F++ N ++++A PV + LPDL SRL+ +++ DD Sbjct: 118 AGEADWEEHFFYLFNRTRASGGHMILSADRRPVDLSLVLPDLASRLQWGLTLRLEPLDDV 177 Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236 + + A R + + +++ R R L +L+D++D +L+ +T Sbjct: 178 GKLQGLQARAAARGLELPDDTGRFLLSRYARDLGGLFQLLDRLDGASLAAQRRLTIPFVR 237 Query: 237 EVLKETQQ 244 +VL + Sbjct: 238 QVLGGDEG 245 >gi|326405005|ref|YP_004285087.1| hypothetical protein ACMV_28580 [Acidiphilium multivorum AIU301] gi|325051867|dbj|BAJ82205.1| hypothetical protein ACMV_28580 [Acidiphilium multivorum AIU301] Length = 237 Score = 165 bits (418), Expect = 5e-39, Method: Composition-based stats. Identities = 58/219 (26%), Positives = 103/219 (47%), Gaps = 3/219 (1%) Query: 28 LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87 + F + D + ++ A + + W +R ++L G +GSGKS LA IW+ + Sbjct: 1 MALPFDEPERFALADFIEAASNAAARAALAAPGDWVNRRLVLWGEAGSGKSHLAWIWAAR 60 Query: 88 SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTF 147 + +TR A L + P+L+EDID + Q +LMT RT Sbjct: 61 TCATRLD--AARLRTPASPGGAPLLIEDIDAAAAPLALFATLE-RATQAAVPVLMTCRTP 117 Query: 148 PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER 207 P V PDL SRL+A+ ++I + + L+ ++ ++ A RQ+ + L +++ R+ R Sbjct: 118 PARLPVEPPDLASRLRASLTIRIEPAEPELLDALLHRLAAARQMSLPPALHQFLLTRLPR 177 Query: 208 SLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + + ++D AL+ G +R LA +L E + Sbjct: 178 RPAVLREAIARLDRYALALGTAPSRRLAERLLDELADPE 216 >gi|255065691|ref|ZP_05317546.1| DnaA regulatory inactivator Hda [Neisseria sicca ATCC 29256] gi|255050009|gb|EET45473.1| DnaA regulatory inactivator Hda [Neisseria sicca ATCC 29256] Length = 222 Score = 165 bits (418), Expect = 5e-39, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 89/223 (39%), Gaps = 11/223 (4%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL F F D L + + V ++ + + G G+GKS L W Sbjct: 3 QLIFDFAERGYPGFDKFL-GTENAELVYVLQHKHD---PFIYVWGEEGAGKSHLLRAWVA 58 Query: 87 KS-----RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL-FHIINSIHQYDSSL 140 ++ ++ A L + + + ++ I+ L + L F + N Sbjct: 59 QALDAGKKAVYIDAAATPLTEAAFEA-EYLAIDQIEKLGNEEQALLFAVFNRFRNSGKGF 117 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L+ + V DL +R+ V ++ D +V M A RQ+ ID ++ Y Sbjct: 118 LLLSSEHTPQQLVIREDLRTRMAYCLVYEVKPLTDREKIDALVSMAAARQVTIDPEIFEY 177 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 ++ R + +++D +DN A++ G IT L ++LK+ + Sbjct: 178 LLNHWRRDMDSLMQMLDTLDNYAVTMGKRITLPLLRQLLKQQE 220 >gi|296282392|ref|ZP_06860390.1| ATPase [Citromicrobium bathyomarinum JL354] Length = 196 Score = 165 bits (418), Expect = 5e-39, Method: Composition-based stats. Identities = 61/203 (30%), Positives = 85/203 (41%), Gaps = 24/203 (11%) Query: 44 LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI 103 ++ SA V + WP R IL G S SGKS L ++ Sbjct: 13 VIGSANLAVVEALREPERWPFRTAILRGESRSGKSLLGRWFAHAGLGETIDPAD------ 66 Query: 104 LIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 +T LFH N + ++LL+ P W + LPDL SRL Sbjct: 67 ----------------AMEETALFHRWNRAQEEGTALLLIPEKAP--WEIALPDLRSRLG 108 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 AA ++I PDDD + +IV A R + + + Y+V RM RS AE+ V +D LA Sbjct: 109 AALALEIGQPDDDMMRDLIVSHAARRGLMLGEDALTYVVPRMTRSFAAAERFVAVLDRLA 168 Query: 224 LSRGMGITRSLAAEVLKETQQCD 246 L R TR+L + L+ D Sbjct: 169 LERQARPTRNLCRDALETLYGPD 191 >gi|73542460|ref|YP_296980.1| hypothetical protein Reut_A2775 [Ralstonia eutropha JMP134] gi|72119873|gb|AAZ62136.1| regulatory inactivation of DnaA Hda protein [Ralstonia eutropha JMP134] Length = 235 Score = 165 bits (418), Expect = 6e-39, Method: Composition-based stats. Identities = 44/234 (18%), Positives = 99/234 (42%), Gaps = 15/234 (6%) Query: 24 KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW------PSRVVILVGPSGSGK 77 + +QL + D+ +V ++ +AV+ + PS R+ L G +G G+ Sbjct: 4 RPKQLSLELGSPPPSTFDNFVV-ASNREAVQRLHDLPSAVAQERAIDRLFYLWGENGCGR 62 Query: 78 SCLANIWSDKS-----RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD-FNDTQLFHIIN 131 + L + + + S D + + + ++D++LLD +F + N Sbjct: 63 THLLHAVCEATPQTGINCRYLSPHHPLSDFLFDPSCQLYTVDDVELLDEARQIAVFSLYN 122 Query: 132 SIHQY-DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 + + ++L++ P + V DL +RL V ++ D+ +++ +R Sbjct: 123 EVRAHVRTALVVAGGMAPRAMPVR-EDLRTRLGWGLVYQVQPLSDEDKMSAVLQAARERG 181 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 + + ++ ++V R R + L+D +D +L R +T L E+ E ++ Sbjct: 182 LQLSPEITHWLVTRHYRDMPSLMALLDALDTYSLERKRPVTLPLLREMFAEFRE 235 >gi|53803270|ref|YP_114933.1| DnaA domain-containing protein [Methylococcus capsulatus str. Bath] gi|53757031|gb|AAU91322.1| DnaA domain protein [Methylococcus capsulatus str. Bath] Length = 232 Score = 165 bits (418), Expect = 6e-39, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 92/229 (40%), Gaps = 12/229 (5%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 +Q+ F + + E A S ++ L G +G GK+ L N Sbjct: 2 AQQIPLHFAVDPLQTFEAYWAGPNAEAAEAARRSARGEGDTLLYLWGDTGLGKTHLVNAA 61 Query: 85 SDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFHIINS 132 ++ S L I ++ + V L+DID + + QLF + N+ Sbjct: 62 CREAFHNGRSAACLPLALIGECGPAVLEGMENQNLVCLDDIDTIAGRDDWERQLFGLFNA 121 Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 + ++LL+TA P V LPDL +RL V+++ D+ + + + Sbjct: 122 MRDAGNTLLITATAPPAELPVALPDLKTRLAWGLVLRLHPLTDEHKLAALERRAGMLGLD 181 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + ++ +++ R + + L++++D+ +L+ +T L++ Sbjct: 182 LSPRVGRFLLSHCRRDMASLQALLEELDHASLAAKRRLTVPFIKGYLED 230 >gi|315292418|gb|EFU51770.1| DnaA regulatory inactivator Hda [Escherichia coli MS 153-1] Length = 260 Score = 165 bits (418), Expect = 6e-39, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 86/231 (37%), Gaps = 13/231 (5%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 N QL + L + S + L G+G+S L + Sbjct: 29 NTPAQLSLPLYLPDDETFASFWPGDNSSLLAALQNVLRQEHSGYIYLWAREGAGRSHLLH 88 Query: 83 IWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHII 130 + + + + K + ++ V +++I+ + ++ +F + Sbjct: 89 AACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCIDNIECIAGDELWEMAIFDLY 148 Query: 131 NSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N I + LL+T P + LPDL SRL + K+ D+ + + R Sbjct: 149 NRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLR 208 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + + ++++R++R + +D++D +++ +T E+LK Sbjct: 209 GFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 259 >gi|167624256|ref|YP_001674550.1| DNA replication initiation factor [Shewanella halifaxensis HAW-EB4] gi|167354278|gb|ABZ76891.1| Chromosomal replication initiator DnaA [Shewanella halifaxensis HAW-EB4] Length = 236 Score = 164 bits (417), Expect = 7e-39, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 90/234 (38%), Gaps = 18/234 (7%) Query: 23 NKEEQLFFS--FPRCLGISRDDLLVHSAIEQAVRLIDSWPSW-PSRVVILVGPSGSGKSC 79 N QL P + + ++ ++ + + V L GP SG++ Sbjct: 4 NSPLQLSLPVHLPDDETFNS--YYPAAGNDELIQSLQACAEGRAEGAVFLWGPEKSGRTH 61 Query: 80 LANIWSDKSRSTR---------FSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLF 127 L + + + ++ V ++D++ + + + +F Sbjct: 62 LMHAACAHANDLGRSSFYIPLGIHASISTALLEGLEKLDLVCIDDVNAIAGHPLWEEAIF 121 Query: 128 HIINSIHQYD-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 + N I + SL+++A P G LPDL SR++ ++ D+ + + Sbjct: 122 DLYNRISEQKTCSLIVSASVSPSDSGFSLPDLVSRMQWGLNYQLQPMADEEKLAALQRRA 181 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 A R + + + + +++ R+ R L ++D++D ++ +T E+L+ Sbjct: 182 AMRGLQLPEDVGRFLLNRLARDLRTLFDVLDRLDKASMVHQRKLTIPFIKEMLR 235 >gi|118580735|ref|YP_901985.1| chromosomal replication initiator, DnaA [Pelobacter propionicus DSM 2379] gi|118503445|gb|ABK99927.1| Chromosomal replication initiator, DnaA [Pelobacter propionicus DSM 2379] Length = 236 Score = 164 bits (417), Expect = 7e-39, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 85/227 (37%), Gaps = 14/227 (6%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDS--WPSWPSRVVILVGPSGSGKSCLANI 83 Q FP + D +V AVR S P R++ L GP GSGK+ L Sbjct: 1 MQQILEFPVSSSCTFDSFVVCDGNAAAVRFARRITDESEPERLLYLHGPPGSGKTHLLRA 60 Query: 84 WS-DKSRSTRFSNIAKSLDSILID--------TRKPVLLEDIDLLDFND---TQLFHIIN 131 + + + S + + ++++D+ LL + L+ + N Sbjct: 61 IALELAGGNPDQAPYLSCRDVRSARSLVDRFHGAQGLVVDDLQLLPDSQDLRAALWQLFN 120 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 H+ ++++ P L SRL V ++ DD ++ K+ DRQ+ Sbjct: 121 DFHEAGRAVVLAGLHPPRMLPHLDDHLVSRLLWGLVARVDASDDLSRRMILKKIADDRQV 180 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238 + + YI+ R + + + +L+ IT +LA E Sbjct: 181 RVPDDVVEYIMVTTSREVGELIGFFETIYRFSLAHKRRITLALAREA 227 >gi|225077364|ref|ZP_03720563.1| hypothetical protein NEIFLAOT_02424 [Neisseria flavescens NRL30031/H210] gi|319638485|ref|ZP_07993247.1| DnaA-like protein [Neisseria mucosa C102] gi|224951292|gb|EEG32501.1| hypothetical protein NEIFLAOT_02424 [Neisseria flavescens NRL30031/H210] gi|317400234|gb|EFV80893.1| DnaA-like protein [Neisseria mucosa C102] Length = 222 Score = 164 bits (417), Expect = 8e-39, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 91/223 (40%), Gaps = 11/223 (4%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL F F D L + + V ++ + + + G G+GKS L W Sbjct: 3 QLIFDFASHDYPGFDKFL-GTENAELVYVLQHK---HGQFIYVWGEEGAGKSHLLQAWVA 58 Query: 87 KS-----RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL-FHIINSIHQYDSSL 140 ++ + A L +D + + ++ I+ L+ + L F I N Sbjct: 59 QALDAGRNALYIDAAATPLTEAALDA-EYLAIDQIEKLNNEEQALLFAIFNRFRNSGKGF 117 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L+ + + V DL +R+ V ++ D +V M A RQ+ ID ++ Y Sbjct: 118 LLLSSEYTPQQLVIREDLRTRMAYCLVYEVKPLTDREKIDALVSMAAARQVTIDPEIFEY 177 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 ++ R + +++D +DN A+ G IT L ++LK+ + Sbjct: 178 LLNHWRRDMDSLMQMLDTLDNYAVMMGKRITLPLLRQLLKQQE 220 >gi|261855342|ref|YP_003262625.1| DnaA regulatory inactivator Hda [Halothiobacillus neapolitanus c2] gi|261835811|gb|ACX95578.1| DnaA regulatory inactivator Hda [Halothiobacillus neapolitanus c2] Length = 233 Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 53/228 (23%), Positives = 90/228 (39%), Gaps = 12/228 (5%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP-SRVVILVGPSGSGKSCLA 81 K +Q+ S D + LI + + G GK+ LA Sbjct: 5 GKMQQIPLDLALNAPHSLDGFI-GVENLLLRALITQLALGRGEAQLFIHGAQNCGKTHLA 63 Query: 82 NIWSDKSRSTRFSNIAKS-------LDSILIDTRKPVLLEDIDLLDFNDTQ---LFHIIN 131 + S LD + + ++L+D+D L +D LF +IN Sbjct: 64 QAACFYAGQQGRSAAYIDVKKNPSQLDHMNLSHIDLLVLDDVDALAGDDQGEFLLFDLIN 123 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 + + + LLMTA P + G LPDL SRL + I P++ +++ + +R Sbjct: 124 RLREQEIPLLMTASLPPAACGFQLPDLLSRLGWGITMLIHAPNEAEKIELLRRKAQERGF 183 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + + A Y++QR R L K++ +D+ +LS +T VL Sbjct: 184 DLPFESAVYLLQRSPRDLGSLLKIIQDLDHASLSAQRKLTIPFVRSVL 231 >gi|261380274|ref|ZP_05984847.1| DnaA regulatory inactivator Hda [Neisseria subflava NJ9703] gi|284797135|gb|EFC52482.1| DnaA regulatory inactivator Hda [Neisseria subflava NJ9703] Length = 222 Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 91/223 (40%), Gaps = 11/223 (4%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL F F D L + + V ++ + + + G G+GKS L W Sbjct: 3 QLIFDFASHDYPGFDKFL-GTENAELVYVLQHK---HGQCIYVWGEEGAGKSHLLQAWVA 58 Query: 87 KS-----RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL-FHIINSIHQYDSSL 140 ++ + A L +D + + ++ I+ L+ + L F I N Sbjct: 59 QALDAGRNALYIDAAATPLTEAALDA-EYLAIDQIEKLNNEEQALLFAIFNRFRNSGKGF 117 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L+ + + V DL +R+ V ++ D +V M A RQ+ ID ++ Y Sbjct: 118 LLLSSEYTPQQLVIREDLRTRMAYCLVYEVKPLTDREKIDALVSMAAARQVTIDPEIFEY 177 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 ++ R + +++D +DN A+ G IT L ++LK+ + Sbjct: 178 LLNHWRRDMDSLMQMLDTLDNYAVMMGKRITLPLLRQLLKQQE 220 >gi|241759926|ref|ZP_04758026.1| DnaA regulatory inactivator Hda [Neisseria flavescens SK114] gi|241319934|gb|EER56330.1| DnaA regulatory inactivator Hda [Neisseria flavescens SK114] Length = 222 Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 91/223 (40%), Gaps = 11/223 (4%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL F F D L + + V ++ + + + G G+GKS L W Sbjct: 3 QLIFDFASHDYPGFDKFL-GTENAELVYVLQHK---HGQFIYVWGEEGAGKSHLLRAWVA 58 Query: 87 KS-----RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL-FHIINSIHQYDSSL 140 ++ + A L +D + + ++ I+ L+ + L F I N Sbjct: 59 QALDAGRNALYIDAAATPLTEAALDA-EYLAIDQIEKLNNEEQALLFAIFNRFRNSGKGF 117 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L+ + + V DL +R+ V ++ D +V M A RQ+ ID ++ Y Sbjct: 118 LLLSSEYTPQQLVIREDLRTRMAYCLVYEVKPLTDREKIDALVSMAAARQVTIDPEIFEY 177 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 ++ R + +++D +DN A+ G IT L ++LK+ + Sbjct: 178 LLNHWRRDMDSLMQMLDTLDNYAVMMGKRITLPLLRQLLKQQE 220 >gi|325577813|ref|ZP_08148088.1| DnaA regulatory inactivator Hda [Haemophilus parainfluenzae ATCC 33392] gi|325160558|gb|EGC72684.1| DnaA regulatory inactivator Hda [Haemophilus parainfluenzae ATCC 33392] Length = 231 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 87/228 (38%), Gaps = 15/228 (6%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLID-SWPSWPSRVVILVGPSGSGKSCLANIW 84 +QL + + ++ + + + + L G GK+ L Sbjct: 3 QQLSLPIHQIDDETLENFY-SDNNALLLNSLRQNMTDLQQQFFYLWGSQSVGKTHLLRAL 61 Query: 85 SDKSRSTRFSNIAKSLDS---------ILIDTRKPVLLEDIDLLDFN---DTQLFHIINS 132 ++ + S I L ++ ++ V L+D+ + N + LF + N Sbjct: 62 CNEYIQQQRSAIYVPLSKSQYFSTAVFENLEQQELVCLDDLQTIIGNSEWEIALFDLFNR 121 Query: 133 IHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 I +LL+ +A P S V LPDL SRLK ++ D+ V+ + R I Sbjct: 122 IKTNGKTLLVVSADQSPTSLPVKLPDLASRLKWGESYQLIPLSDEQKFAVLKQNAHQRGI 181 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + A +I R++R + ++ + ++D +L +T +L Sbjct: 182 ILSDDTANFIFTRLDRDMATLKEALVQLDKASLQAKRNLTIPFVKSIL 229 >gi|301046372|ref|ZP_07193533.1| DnaA regulatory inactivator Hda [Escherichia coli MS 185-1] gi|300301654|gb|EFJ58039.1| DnaA regulatory inactivator Hda [Escherichia coli MS 185-1] Length = 269 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 86/231 (37%), Gaps = 13/231 (5%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 N QL + L + S + L G+G+S L + Sbjct: 38 NTPAQLSLPLYLPDDETFASFWPGDNSSLLAALQNVLRQEHSGYIYLWAREGAGRSHLLH 97 Query: 83 IWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHII 130 + + + + K + ++ V +++I+ + ++ +F + Sbjct: 98 AACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCIDNIECIAGDELWEMAIFDLY 157 Query: 131 NSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N I + LL+T P + LPDL SRL + K+ D+ + + R Sbjct: 158 NRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLR 217 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + + ++++R++R + +D++D +++ +T E+LK Sbjct: 218 GFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 268 >gi|261377806|ref|ZP_05982379.1| DnaA regulatory inactivator Hda [Neisseria cinerea ATCC 14685] gi|269146107|gb|EEZ72525.1| DnaA regulatory inactivator Hda [Neisseria cinerea ATCC 14685] Length = 222 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 89/224 (39%), Gaps = 11/224 (4%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL F F S D L + + V ++ + + + G G+GKS L W Sbjct: 3 QLIFDFAAHDYPSFDKFL-GTENAELVYVLQHK---HGQFIYVWGEEGAGKSHLLQAWVA 58 Query: 87 KS-----RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL-FHIINSIHQYDSSL 140 ++ + A+ L +D + ++ ++ L + L F I N Sbjct: 59 QALEAGKNAVYVDAAAEPLTDSALDA-DYLAIDQVEKLGNEEQALLFSIFNRFRNSGKGF 117 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L+ V DL +R+ V ++ D +V M A RQ+ ID ++ Y Sbjct: 118 LLLGSESTPQQLVIREDLRTRMAYCLVYEVKSLTDREKIDALVSMAAARQVTIDPEIFEY 177 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 ++ R + ++D +DN A++ G IT L ++LK+ + Sbjct: 178 LLNHWRRDMDSLMDMLDTLDNYAVTMGKRITLPLLRQLLKQQEN 221 >gi|212635540|ref|YP_002312065.1| DNA replication initiation factor [Shewanella piezotolerans WP3] gi|212557024|gb|ACJ29478.1| DNA replication factor, putative [Shewanella piezotolerans WP3] Length = 236 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 89/234 (38%), Gaps = 18/234 (7%) Query: 23 NKEEQLFFS--FPRCLGISRDDLLVHSAIEQAVRLIDSWPSW-PSRVVILVGPSGSGKSC 79 N QL P + + ++ ++ + + V + GP SG++ Sbjct: 4 NSPLQLSLPVHLPDDETFNS--YYPAAGNDELIQSLQACAEGRAEGAVFIWGPEKSGRTH 61 Query: 80 LANIWSDKSRST---------RFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLF 127 L + + ++ V ++D++ + + + +F Sbjct: 62 LMHAACAHANDLNRSSFYIPLGIHASISPALLEGLEKIDLVCIDDVNAIAGHPLWEEAIF 121 Query: 128 HIINSIHQYD-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 + N I + SL+++A P G LPDL SR++ ++ DD + + Sbjct: 122 DLYNRISEQKTCSLVLSASVSPSETGFALPDLISRMQWGLNYQLQPMADDEKLAALQRRA 181 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 A R + + + + +++ R+ R L ++D++D ++ +T E+L+ Sbjct: 182 AMRGLQLSEDVGRFLLNRLARDLRTLFDVLDRLDKASMVHQRKLTIPFIKEMLR 235 >gi|157375578|ref|YP_001474178.1| DNA replication initiation factor [Shewanella sediminis HAW-EB3] gi|157317952|gb|ABV37050.1| chromosomal replication initiator, DnaA [Shewanella sediminis HAW-EB3] Length = 236 Score = 163 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 41/234 (17%), Positives = 93/234 (39%), Gaps = 18/234 (7%) Query: 23 NKEEQLFFS--FPRCLGISRDDLLVHSAIEQAVRLIDSWPSW-PSRVVILVGPSGSGKSC 79 N QL P + + ++ ++ + + R V L GP SG++ Sbjct: 4 NSPLQLSLPVHLPDDETFNS--YYPAAGNDELIQSLQACAEGRADRSVFLWGPVKSGRTH 61 Query: 80 LANIWSDKSRST---------RFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLF 127 L + + + ++ + ++D+D + + + +F Sbjct: 62 LMHAACAHANDLERSSFYLPLGIHASISPMLLEGLEQLDLICIDDVDAIAGHPLWEEAIF 121 Query: 128 HIINSIHQYD-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 + N + ++D SL+++A P G LPDL SR++ ++ DD + + Sbjct: 122 DLYNRVSEHDNCSLIVSASVSPNDSGFALPDLVSRMQWGLNYQLQPMADDEKLAALQRRA 181 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 A R + + + + +++ R+ R L ++D++D +L +T E+L+ Sbjct: 182 AMRGLQLPEDVGRFLLNRLARDLRTLFDVLDRLDKDSLVHQRKLTIPFVKEMLR 235 >gi|300951801|ref|ZP_07165615.1| DnaA regulatory inactivator Hda [Escherichia coli MS 116-1] gi|301024719|ref|ZP_07188362.1| DnaA regulatory inactivator Hda [Escherichia coli MS 69-1] gi|300396450|gb|EFJ79988.1| DnaA regulatory inactivator Hda [Escherichia coli MS 69-1] gi|300448964|gb|EFK12584.1| DnaA regulatory inactivator Hda [Escherichia coli MS 116-1] Length = 256 Score = 163 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 86/231 (37%), Gaps = 13/231 (5%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 N QL + L + S + L G+G+S L + Sbjct: 25 NTPAQLSLPLYLPDDETFASFWPGDNSSLLAALQNVLRQEHSGYIYLWAREGAGRSHLLH 84 Query: 83 IWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHII 130 + + + + K + ++ V +++I+ + ++ +F + Sbjct: 85 AACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCIDNIECIAGDELWEMAIFDLY 144 Query: 131 NSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N I + LL+T P + LPDL SRL + K+ D+ + + R Sbjct: 145 NRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLR 204 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + + ++++R++R + +D++D +++ +T E+LK Sbjct: 205 GFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 255 >gi|324008594|gb|EGB77813.1| DnaA regulatory inactivator Hda [Escherichia coli MS 57-2] Length = 257 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 86/231 (37%), Gaps = 13/231 (5%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 N QL + L + S + L G+G+S L + Sbjct: 26 NTPAQLSLPLYLPDDETFASFWPGDNSSLLAALQNVLRQEHSGYIYLWAREGAGRSHLLH 85 Query: 83 IWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHII 130 + + + + K + ++ V +++I+ + ++ +F + Sbjct: 86 AACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCIDNIECIAGDELWEMAIFDLY 145 Query: 131 NSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N I + LL+T P + LPDL SRL + K+ D+ + + R Sbjct: 146 NRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLR 205 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + + ++++R++R + +D++D +++ +T E+LK Sbjct: 206 GFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 256 >gi|325916438|ref|ZP_08178710.1| regulatory inactivation of DnaA Hda protein [Xanthomonas vesicatoria ATCC 35937] gi|325537358|gb|EGD09082.1| regulatory inactivation of DnaA Hda protein [Xanthomonas vesicatoria ATCC 35937] Length = 233 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 53/230 (23%), Positives = 90/230 (39%), Gaps = 19/230 (8%) Query: 27 QLFFSFPRCLGISRDDLLVHS---AIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA-N 82 QL + D + + W + L GP+G+GK+ LA Sbjct: 5 QLPLALRAPSDQRFDSYIAAPEGLLAQLQALAAGQVSDW----LYLAGPAGTGKTHLALA 60 Query: 83 IWSDKSRSTR------FSNIAKSLDSIL--IDTRKPVLLEDIDLLDF---NDTQLFHIIN 131 + + ++ R A L L ++ R V L+ +D + ++ LF N Sbjct: 61 VCAAAEQAGRATAYLPLQAAAGRLRDALEALEGRSLVALDGVDSIAGQRDDEVALFDFHN 120 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 +SLL TAR P + LPDL SRL + + +PDD V+ R + Sbjct: 121 RARAAGTSLLYTARQMPDGLALILPDLRSRLSQCIRIGLPVPDDAARAAVLRDRAQRRGL 180 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 +D +++ ER L L++++D +L+ IT VL++ Sbjct: 181 ALDDAAIDWLLTHSERELATLVALLERLDRESLAAKRRITVPFLRRVLED 230 >gi|307544884|ref|YP_003897363.1| K10763 DnaA-homolog protein [Halomonas elongata DSM 2581] gi|307216908|emb|CBV42178.1| K10763 DnaA-homolog protein [Halomonas elongata DSM 2581] Length = 233 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 79/231 (34%), Gaps = 16/231 (6%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 QL + + + L + L G G G+S L Sbjct: 3 RAPAQLPLGVGLRDDATFANFYPGPSATLVACLKHQLEESGEPFLYLWGADGVGRSHLLQ 62 Query: 83 IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--------------DTQLFH 128 + + L+ + P++LE+++ LD + LFH Sbjct: 63 AACHAASDQDRRALYLPLEE--LGHFPPLMLEEVERLDLLAIDDLDRVVGRKRWEEALFH 120 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N + L++ A P V LPDL SRL ++ DD + + Sbjct: 121 AFNRLRDDGRRLIVAASAPPRQLAVTLPDLASRLTWGMTFQVPGLDDQGRLEALRLRAGG 180 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + + ++A YI+ R R L ++++ +D +LS +T + L Sbjct: 181 RGMELPDEVARYILHRGPRRLEALFEVLETLDRASLSAQRKLTIPFVKQAL 231 >gi|300903508|ref|ZP_07121433.1| DnaA regulatory inactivator Hda [Escherichia coli MS 84-1] gi|300930133|ref|ZP_07145555.1| DnaA regulatory inactivator Hda [Escherichia coli MS 187-1] gi|300404540|gb|EFJ88078.1| DnaA regulatory inactivator Hda [Escherichia coli MS 84-1] gi|300461977|gb|EFK25470.1| DnaA regulatory inactivator Hda [Escherichia coli MS 187-1] gi|315300454|gb|EFU59684.1| DnaA regulatory inactivator Hda [Escherichia coli MS 16-3] Length = 255 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 86/231 (37%), Gaps = 13/231 (5%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 N QL + L + S + L G+G+S L + Sbjct: 24 NTPAQLSLPLYLPDDETFASFWPGDNSSLLAALQNVLRQEHSGYIYLWAREGAGRSHLLH 83 Query: 83 IWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHII 130 + + + + K + ++ V +++I+ + ++ +F + Sbjct: 84 AACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCIDNIECIAGDELWEMAIFDLY 143 Query: 131 NSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N I + LL+T P + LPDL SRL + K+ D+ + + R Sbjct: 144 NRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLR 203 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + + ++++R++R + +D++D +++ +T E+LK Sbjct: 204 GFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 254 >gi|324011194|gb|EGB80413.1| DnaA regulatory inactivator Hda [Escherichia coli MS 60-1] Length = 274 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 86/231 (37%), Gaps = 13/231 (5%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 N QL + L + S + L G+G+S L + Sbjct: 43 NTPAQLSLPLYLPDDETFASFWPGDNSSLLAALQNVLRQEHSGYIYLWAREGAGRSHLLH 102 Query: 83 IWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHII 130 + + + + K + ++ V +++I+ + ++ +F + Sbjct: 103 AACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCIDNIECIAGDELWEMAIFDLY 162 Query: 131 NSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N I + LL+T P + LPDL SRL + K+ D+ + + R Sbjct: 163 NRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLR 222 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + + ++++R++R + +D++D +++ +T E+LK Sbjct: 223 GFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 273 >gi|218768138|ref|YP_002342650.1| DnaA regulatory inactivator Hda [Neisseria meningitidis Z2491] gi|121052146|emb|CAM08463.1| hypothetical protein NMA1279 [Neisseria meningitidis Z2491] gi|254671090|emb|CBA08030.1| conserved hypothetical protein [Neisseria meningitidis alpha153] gi|319410380|emb|CBY90734.1| DnaA-homolog protein Hda [Neisseria meningitidis WUE 2594] Length = 243 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 89/223 (39%), Gaps = 11/223 (4%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL F F S D L + + V ++ + + + G G+GKS L W Sbjct: 24 QLIFDFAAHDYPSFDKFL-GTENAELVYVLRHK---HGQFIYVWGEEGAGKSHLLQAWVA 79 Query: 87 KS-----RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL-FHIINSIHQYDSSL 140 ++ + + L + + + ++ ++ L + L F I N Sbjct: 80 QALEAGKNAAYIDAASMPLTDAAFEA-EYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGF 138 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L+ + V DL +R+ V ++ D + M A RQ+ +D ++ Y Sbjct: 139 LLLGSEYTPQQLVIREDLRTRMAYCLVYEVKPLTDQEKIDALASMAAARQVTVDSEIFEY 198 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 +++ R + ++D +DN A++ G IT L ++LK+ + Sbjct: 199 LLKHWRRDMDSLMMMLDTLDNYAVTMGKRITLPLLRQLLKQQE 241 >gi|149378135|ref|ZP_01895854.1| DNA replication initiation factor [Marinobacter algicola DG893] gi|149357580|gb|EDM46083.1| DNA replication initiation factor [Marinobacter algicola DG893] Length = 238 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 96/236 (40%), Gaps = 15/236 (6%) Query: 18 NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW--PSWPSRVVILVGPSGS 75 D+ QL D+ A + S + V+ + G + + Sbjct: 2 EDKKAVSASQLVLGVKLRDDARFDNFH-GGRNADAAARLKSACEQAGAVPVIAVCGDADT 60 Query: 76 GKSCLANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFND--- 123 GKS L + + S+I S++ +L ++ + + L+D+DL+ + Sbjct: 61 GKSHLLQAACHLAEQNQQSSICVSMEELLPLGPDSLSGLEGQSVICLDDLDLIAGQENWE 120 Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 +FH+ N ++ + ++++ P S L DL SRL +++ + DD ++++ Sbjct: 121 EAIFHLYNRVNDHGHLMVVSLSELPASLPFGLQDLVSRLSHGLTIQLGIHRDDDRLRILM 180 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + + +A +I++R R L ++D++D +L +T VL Sbjct: 181 ARAEQRGLVLSDDVAVFILRRAPRKLADLLAILDRLDENSLRAQRRLTIPFVKSVL 236 >gi|78048657|ref|YP_364832.1| hypothetical protein XCV3101 [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037087|emb|CAJ24832.1| replication related protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 235 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 50/235 (21%), Positives = 89/235 (37%), Gaps = 19/235 (8%) Query: 27 QLFFSFPRCLGISRDDLLVHS---AIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA-N 82 QL + D + + W + L GP+G+GK+ LA + Sbjct: 5 QLPLALRAPPDQRFDSYIAAPDGLLAQLQALAAGHVSDW----LYLSGPAGTGKTHLALS 60 Query: 83 IWSDKSRSTR------FSNIAKSLDSIL--IDTRKPVLLEDIDLLDF---NDTQLFHIIN 131 + + ++ R A L L ++ R V L+ ++ + ++ LF N Sbjct: 61 LCAAAEQAGRTPAYLPLQAAAGRLRDALEALEGRGLVALDGVESIAGRRDDEVALFDFHN 120 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 +LL TAR P + LPDL SRL + + + DD V+ R + Sbjct: 121 RARAAGITLLYTARQMPDGLALVLPDLRSRLSQCIRIGLPVLDDAARGAVLRDRAQRRGL 180 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 +D+ +++ ER L L+D++D +L+ IT V+ + Sbjct: 181 ALDEAAIDWLLTHSERELAGLVALLDRLDRESLAAKRRITVPFLRRVVAGMPGPE 235 >gi|85374595|ref|YP_458657.1| ATPase [Erythrobacter litoralis HTCC2594] gi|84787678|gb|ABC63860.1| ATPase [Erythrobacter litoralis HTCC2594] Length = 209 Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 58/223 (26%), Positives = 95/223 (42%), Gaps = 24/223 (10%) Query: 24 KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI 83 + Q+ + ++V +A + + + +WP IL+GP SGKS L Sbjct: 6 RFSQIALPLAHGHSSNPAAIVVGNANARIIEALAEPSAWPFGTAILMGPPRSGKSLLGRW 65 Query: 84 WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMT 143 ++ ++T +++ D +T LFH N Q LL+ Sbjct: 66 VEEQGKAT--------------------VIDGADSES--ETTLFHRWNRAQQNGEKLLLI 103 Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203 A SW + LPDL SRL AA V+I PDD L +++ R + + + Y++ Sbjct: 104 ADG--ESWHITLPDLKSRLGAALHVEIGTPDDAMLGDLVLSHATRRGLALGEDALTYLIP 161 Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 R RS EKLV +D L+L R + T + + L+ Q + Sbjct: 162 RATRSFADIEKLVGHIDRLSLERKVAPTLGIWRDALEAVQGPE 204 >gi|300981824|ref|ZP_07175756.1| DnaA regulatory inactivator Hda [Escherichia coli MS 45-1] gi|300408901|gb|EFJ92439.1| DnaA regulatory inactivator Hda [Escherichia coli MS 45-1] Length = 256 Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 86/231 (37%), Gaps = 13/231 (5%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 N QL + L + S + L G+G+S L + Sbjct: 25 NTPAQLSLPLYLPDDETFASFWPGDNSSLLAALQNVLRQEHSGYIYLWAREGAGRSHLLH 84 Query: 83 IWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHII 130 + + + + K + ++ V +++I+ + ++ +F + Sbjct: 85 AACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCIDNIECIAGDELWEMAIFDLY 144 Query: 131 NSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N I + LL+T P + LPDL SRL + K+ D+ + + R Sbjct: 145 NRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLR 204 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + + ++++R++R + +D++D +++ +T E+LK Sbjct: 205 GFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 255 >gi|90020543|ref|YP_526370.1| regulatory inactivation of DnaA Hda protein [Saccharophagus degradans 2-40] gi|89950143|gb|ABD80158.1| regulatory inactivation of DnaA Hda protein [Saccharophagus degradans 2-40] Length = 239 Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 91/231 (39%), Gaps = 15/231 (6%) Query: 25 EEQLFFSFPRCLGISRDDLLVH-SAIEQAVRLIDSWPSWPSRVVIL-VGPSGSGKSCLAN 82 QL + + L + Q V + + + +L G GSG + L Sbjct: 8 PVQLSLGVSLREETTFANFLGAVGSNAQPVAALQQFAANEGEQNVLVWGAPGSGLTHLLQ 67 Query: 83 IWSDKSRSTRFSNIAKSLDSIL----------IDTRKPVLLEDIDLLDF---NDTQLFHI 129 ++ + L ++ ++ + V L+ ID + + +FH+ Sbjct: 68 AVCHRAYEHGLAVQYLPLQDMVGYDAQSICDGLEQMQVVCLDGIDHICGIKSWEQGVFHL 127 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N++ LL+ + T P + + LPDL SR+ + + +D + ++ R Sbjct: 128 YNNLRDAGHRLLIASHTSPPALPLTLPDLKSRVLGSVRYHVESLNDLQKQDALIARAVAR 187 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + ++A +I+ R R L+D++D+ +L + +T A EVL Sbjct: 188 GMDMPVEVARFILNRASRDTNELFYLLDQLDDASLQKQRKLTVPFAKEVLN 238 >gi|300897622|ref|ZP_07116027.1| DnaA regulatory inactivator Hda [Escherichia coli MS 198-1] gi|300997976|ref|ZP_07181907.1| DnaA regulatory inactivator Hda [Escherichia coli MS 200-1] gi|301329019|ref|ZP_07222046.1| DnaA regulatory inactivator Hda [Escherichia coli MS 78-1] gi|301644486|ref|ZP_07244483.1| DnaA regulatory inactivator Hda [Escherichia coli MS 146-1] gi|300304077|gb|EFJ58597.1| DnaA regulatory inactivator Hda [Escherichia coli MS 200-1] gi|300358622|gb|EFJ74492.1| DnaA regulatory inactivator Hda [Escherichia coli MS 198-1] gi|300844653|gb|EFK72413.1| DnaA regulatory inactivator Hda [Escherichia coli MS 78-1] gi|301077231|gb|EFK92037.1| DnaA regulatory inactivator Hda [Escherichia coli MS 146-1] Length = 257 Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 86/231 (37%), Gaps = 13/231 (5%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 N QL + L + S + L G+G+S L + Sbjct: 26 NTPAQLSLPLYLPDDETFASFWPGDNSSLLAALQNVLRQEHSGYIYLWAREGAGRSHLLH 85 Query: 83 IWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHII 130 + + + + K + ++ V +++I+ + ++ +F + Sbjct: 86 AACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCIDNIECIAGDELWEMAIFDLY 145 Query: 131 NSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N I + LL+T P + LPDL SRL + K+ D+ + + R Sbjct: 146 NRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLR 205 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + + ++++R++R + +D++D +++ +T E+LK Sbjct: 206 GFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 256 >gi|15803019|ref|NP_289049.1| DNA replication initiation factor [Escherichia coli O157:H7 EDL933] gi|15832612|ref|NP_311385.1| DNA replication initiation factor [Escherichia coli O157:H7 str. Sakai] gi|24113824|ref|NP_708334.1| DNA replication initiation factor [Shigella flexneri 2a str. 301] gi|26248855|ref|NP_754895.1| DNA replication initiation factor [Escherichia coli CFT073] gi|30063870|ref|NP_838041.1| DNA replication initiation factor [Shigella flexneri 2a str. 2457T] gi|74313022|ref|YP_311441.1| DNA replication initiation factor [Shigella sonnei Ss046] gi|82544943|ref|YP_408890.1| DNA replication initiation factor [Shigella boydii Sb227] gi|89109302|ref|AP_003082.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia coli str. K-12 substr. W3110] gi|91211817|ref|YP_541803.1| DNA replication initiation factor [Escherichia coli UTI89] gi|110642658|ref|YP_670388.1| DNA replication initiation factor [Escherichia coli 536] gi|110806426|ref|YP_689946.1| DNA replication initiation factor [Shigella flexneri 5 str. 8401] gi|117624680|ref|YP_853593.1| DNA replication initiation factor [Escherichia coli APEC O1] gi|157158460|ref|YP_001463818.1| DNA replication initiation factor [Escherichia coli E24377A] gi|157161957|ref|YP_001459275.1| DNA replication initiation factor [Escherichia coli HS] gi|168748446|ref|ZP_02773468.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4113] gi|168756267|ref|ZP_02781274.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4401] gi|168761104|ref|ZP_02786111.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4501] gi|168768587|ref|ZP_02793594.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4486] gi|168778461|ref|ZP_02803468.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4076] gi|168787841|ref|ZP_02812848.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC869] gi|170019220|ref|YP_001724174.1| DNA replication initiation factor [Escherichia coli ATCC 8739] gi|170082106|ref|YP_001731426.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia coli str. K-12 substr. DH10B] gi|170684093|ref|YP_001744679.1| DNA replication initiation factor [Escherichia coli SMS-3-5] gi|187733723|ref|YP_001881287.1| DNA replication initiation factor [Shigella boydii CDC 3083-94] gi|188495904|ref|ZP_03003174.1| DnaA family protein Hda [Escherichia coli 53638] gi|191169203|ref|ZP_03030958.1| DnaA family protein Hda [Escherichia coli B7A] gi|191172946|ref|ZP_03034481.1| DnaA family protein Hda [Escherichia coli F11] gi|193064697|ref|ZP_03045775.1| DnaA family protein Hda [Escherichia coli E22] gi|193068417|ref|ZP_03049380.1| DnaA family protein Hda [Escherichia coli E110019] gi|194427342|ref|ZP_03059892.1| DnaA family protein Hda [Escherichia coli B171] gi|194437674|ref|ZP_03069770.1| DnaA family protein Hda [Escherichia coli 101-1] gi|195936639|ref|ZP_03082021.1| DNA replication initiation factor [Escherichia coli O157:H7 str. EC4024] gi|208808962|ref|ZP_03251299.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4206] gi|208813090|ref|ZP_03254419.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4045] gi|208820209|ref|ZP_03260529.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4042] gi|209400783|ref|YP_002271965.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4115] gi|209919973|ref|YP_002294057.1| DNA replication initiation factor [Escherichia coli SE11] gi|215487788|ref|YP_002330219.1| DNA replication initiation factor [Escherichia coli O127:H6 str. E2348/69] gi|217327019|ref|ZP_03443102.1| DnaA family protein Hda [Escherichia coli O157:H7 str. TW14588] gi|218555021|ref|YP_002387934.1| DNA replication initiation factor [Escherichia coli IAI1] gi|218559420|ref|YP_002392333.1| DNA replication initiation factor [Escherichia coli S88] gi|218690611|ref|YP_002398823.1| DNA replication initiation factor [Escherichia coli ED1a] gi|218696123|ref|YP_002403790.1| DNA replication initiation factor [Escherichia coli 55989] gi|218700953|ref|YP_002408582.1| DNA replication initiation factor [Escherichia coli IAI39] gi|218705995|ref|YP_002413514.1| DNA replication initiation factor [Escherichia coli UMN026] gi|227887525|ref|ZP_04005330.1| DNA replication initiation protein A [Escherichia coli 83972] gi|237705002|ref|ZP_04535483.1| DNA replication initiation factor [Escherichia sp. 3_2_53FAA] gi|238901661|ref|YP_002927457.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia coli BW2952] gi|253772612|ref|YP_003035443.1| DNA replication initiation factor [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162470|ref|YP_003045578.1| DNA replication initiation factor [Escherichia coli B str. REL606] gi|254794441|ref|YP_003079278.1| DNA replication initiation factor [Escherichia coli O157:H7 str. TW14359] gi|256017356|ref|ZP_05431221.1| DNA replication initiation factor [Shigella sp. D9] gi|256021818|ref|ZP_05435683.1| DNA replication initiation factor [Escherichia sp. 4_1_40B] gi|260845126|ref|YP_003222904.1| ATPase regulatory factor Hda [Escherichia coli O103:H2 str. 12009] gi|260856590|ref|YP_003230481.1| ATPase regulatory factor Hda [Escherichia coli O26:H11 str. 11368] gi|261223071|ref|ZP_05937352.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia coli O157:H7 str. FRIK2000] gi|261259377|ref|ZP_05951910.1| ATPase regulatory factor Hda [Escherichia coli O157:H7 str. FRIK966] gi|291283716|ref|YP_003500534.1| DnaA-like protein hda [Escherichia coli O55:H7 str. CB9615] gi|300817738|ref|ZP_07097953.1| DnaA regulatory inactivator Hda [Escherichia coli MS 107-1] gi|300820837|ref|ZP_07100987.1| DnaA regulatory inactivator Hda [Escherichia coli MS 119-7] gi|300921429|ref|ZP_07137789.1| DnaA regulatory inactivator Hda [Escherichia coli MS 115-1] gi|301023882|ref|ZP_07187613.1| DnaA regulatory inactivator Hda [Escherichia coli MS 196-1] gi|301302849|ref|ZP_07208977.1| DnaA regulatory inactivator Hda [Escherichia coli MS 124-1] gi|306814438|ref|ZP_07448600.1| DNA replication initiation factor [Escherichia coli NC101] gi|307139130|ref|ZP_07498486.1| DNA replication initiation factor [Escherichia coli H736] gi|307312510|ref|ZP_07592143.1| DnaA regulatory inactivator Hda [Escherichia coli W] gi|309794460|ref|ZP_07688883.1| DnaA regulatory inactivator Hda [Escherichia coli MS 145-7] gi|331643113|ref|ZP_08344248.1| DnaA regulatory inactivator Hda [Escherichia coli H736] gi|331648141|ref|ZP_08349231.1| DnaA regulatory inactivator Hda [Escherichia coli M605] gi|331653921|ref|ZP_08354922.1| DnaA regulatory inactivator Hda [Escherichia coli M718] gi|331673947|ref|ZP_08374710.1| DnaA regulatory inactivator Hda [Escherichia coli TA280] gi|331678483|ref|ZP_08379158.1| DnaA regulatory inactivator Hda [Escherichia coli H591] gi|332278353|ref|ZP_08390766.1| DnaA family protein Hda [Shigella sp. D9] gi|12516884|gb|AAG57606.1|AE005479_4 putative DNA replication factor [Escherichia coli O157:H7 str. EDL933] gi|26109261|gb|AAN81463.1|AE016764_145 Hypothetical protein yfgE [Escherichia coli CFT073] gi|13362828|dbj|BAB36781.1| putative DNA replication factor [Escherichia coli O157:H7 str. Sakai] gi|24052912|gb|AAN44041.1| putative DNA replication factor [Shigella flexneri 2a str. 301] gi|30042125|gb|AAP17851.1| putative DNA replication factor [Shigella flexneri 2a str. 2457T] gi|73856499|gb|AAZ89206.1| putative DNA replication factor [Shigella sonnei Ss046] gi|81246354|gb|ABB67062.1| putative DNA replication factor [Shigella boydii Sb227] gi|85675427|dbj|BAA16384.2| ATPase regulatory factor involved in DnaA inactivation [Escherichia coli str. K12 substr. W3110] gi|91073391|gb|ABE08272.1| putative DNA replication factor [Escherichia coli UTI89] gi|110344250|gb|ABG70487.1| hypothetical protein YfgE [Escherichia coli 536] gi|110615974|gb|ABF04641.1| putative DNA replication factor [Shigella flexneri 5 str. 8401] gi|115513804|gb|ABJ01879.1| DNA replication initiation factor [Escherichia coli APEC O1] gi|157067637|gb|ABV06892.1| DnaA family protein Hda [Escherichia coli HS] gi|157080490|gb|ABV20198.1| DnaA family protein Hda [Escherichia coli E24377A] gi|169754148|gb|ACA76847.1| DnaA regulatory inactivator Hda [Escherichia coli ATCC 8739] gi|169889941|gb|ACB03648.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia coli str. K-12 substr. DH10B] gi|170521811|gb|ACB19989.1| DnaA family protein Hda [Escherichia coli SMS-3-5] gi|187430715|gb|ACD09989.1| DnaA family protein Hda [Shigella boydii CDC 3083-94] gi|188017019|gb|EDU55141.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4113] gi|188491103|gb|EDU66206.1| DnaA family protein Hda [Escherichia coli 53638] gi|189003293|gb|EDU72279.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4076] gi|189356555|gb|EDU74974.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4401] gi|189362259|gb|EDU80678.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4486] gi|189368411|gb|EDU86827.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4501] gi|189372386|gb|EDU90802.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC869] gi|190900748|gb|EDV60542.1| DnaA family protein Hda [Escherichia coli B7A] gi|190906810|gb|EDV66414.1| DnaA family protein Hda [Escherichia coli F11] gi|192927580|gb|EDV82196.1| DnaA family protein Hda [Escherichia coli E22] gi|192958369|gb|EDV88809.1| DnaA family protein Hda [Escherichia coli E110019] gi|194414663|gb|EDX30935.1| DnaA family protein Hda [Escherichia coli B171] gi|194423480|gb|EDX39471.1| DnaA family protein Hda [Escherichia coli 101-1] gi|208728763|gb|EDZ78364.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4206] gi|208734367|gb|EDZ83054.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4045] gi|208740332|gb|EDZ88014.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4042] gi|209162183|gb|ACI39616.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4115] gi|209763558|gb|ACI80091.1| putative DNA replication factor [Escherichia coli] gi|209763560|gb|ACI80092.1| putative DNA replication factor [Escherichia coli] gi|209763562|gb|ACI80093.1| putative DNA replication factor [Escherichia coli] gi|209763564|gb|ACI80094.1| putative DNA replication factor [Escherichia coli] gi|209763566|gb|ACI80095.1| putative DNA replication factor [Escherichia coli] gi|209913232|dbj|BAG78306.1| conserved hypothetical protein [Escherichia coli SE11] gi|215265860|emb|CAS10269.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia coli O127:H6 str. E2348/69] gi|217319386|gb|EEC27811.1| DnaA family protein Hda [Escherichia coli O157:H7 str. TW14588] gi|218352855|emb|CAU98654.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia coli 55989] gi|218361789|emb|CAQ99388.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia coli IAI1] gi|218366189|emb|CAR03935.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia coli S88] gi|218370939|emb|CAR18760.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia coli IAI39] gi|218428175|emb|CAR09089.2| ATPase regulatory factor involved in DnaA inactivation [Escherichia coli ED1a] gi|218433092|emb|CAR13987.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia coli UMN026] gi|222034204|emb|CAP76945.1| DnaA-homolog protein hda [Escherichia coli LF82] gi|226901368|gb|EEH87627.1| DNA replication initiation factor [Escherichia sp. 3_2_53FAA] gi|227835875|gb|EEJ46341.1| DNA replication initiation protein A [Escherichia coli 83972] gi|238860037|gb|ACR62035.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia coli BW2952] gi|242378094|emb|CAQ32867.1| regulator of DnaA that prevents premature reinitiation of DNA replication [Escherichia coli BL21(DE3)] gi|253323656|gb|ACT28258.1| DnaA regulatory inactivator Hda [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974371|gb|ACT40042.1| DNA replication initiation factor [Escherichia coli B str. REL606] gi|253978538|gb|ACT44208.1| DNA replication initiation factor [Escherichia coli BL21(DE3)] gi|254593841|gb|ACT73202.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia coli O157:H7 str. TW14359] gi|257755239|dbj|BAI26741.1| ATPase regulatory factor Hda [Escherichia coli O26:H11 str. 11368] gi|257760273|dbj|BAI31770.1| ATPase regulatory factor Hda [Escherichia coli O103:H2 str. 12009] gi|260448425|gb|ACX38847.1| DnaA regulatory inactivator Hda [Escherichia coli DH1] gi|281179547|dbj|BAI55877.1| conserved hypothetical protein [Escherichia coli SE15] gi|281601897|gb|ADA74881.1| DnaA-like protein hda [Shigella flexneri 2002017] gi|284922443|emb|CBG35530.1| DnaA-homolog protein [Escherichia coli 042] gi|290763589|gb|ADD57550.1| DnaA-like protein hda [Escherichia coli O55:H7 str. CB9615] gi|294493697|gb|ADE92453.1| DnaA family protein Hda [Escherichia coli IHE3034] gi|299880636|gb|EFI88847.1| DnaA regulatory inactivator Hda [Escherichia coli MS 196-1] gi|300411663|gb|EFJ94973.1| DnaA regulatory inactivator Hda [Escherichia coli MS 115-1] gi|300526590|gb|EFK47659.1| DnaA regulatory inactivator Hda [Escherichia coli MS 119-7] gi|300529726|gb|EFK50788.1| DnaA regulatory inactivator Hda [Escherichia coli MS 107-1] gi|300841784|gb|EFK69544.1| DnaA regulatory inactivator Hda [Escherichia coli MS 124-1] gi|305851832|gb|EFM52284.1| DNA replication initiation factor [Escherichia coli NC101] gi|306907433|gb|EFN37937.1| DnaA regulatory inactivator Hda [Escherichia coli W] gi|307554516|gb|ADN47291.1| DnaA family protein Hda [Escherichia coli ABU 83972] gi|307625952|gb|ADN70256.1| DNA replication initiation factor [Escherichia coli UM146] gi|308121916|gb|EFO59178.1| DnaA regulatory inactivator Hda [Escherichia coli MS 145-7] gi|309702774|emb|CBJ02105.1| DnaA-homolog protein [Escherichia coli ETEC H10407] gi|312947069|gb|ADR27896.1| DNA replication initiation factor [Escherichia coli O83:H1 str. NRG 857C] gi|315061814|gb|ADT76141.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia coli W] gi|315137119|dbj|BAJ44278.1| DnaA-like protein hda [Escherichia coli DH1] gi|315256513|gb|EFU36481.1| DnaA regulatory inactivator Hda [Escherichia coli MS 85-1] gi|320176256|gb|EFW51317.1| Chromosomal replication initiator protein DnaA [Shigella dysenteriae CDC 74-1112] gi|320180482|gb|EFW55413.1| Chromosomal replication initiator protein DnaA [Shigella boydii ATCC 9905] gi|320188828|gb|EFW63487.1| Chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC1212] gi|320196328|gb|EFW70952.1| Chromosomal replication initiator protein DnaA [Escherichia coli WV_060327] gi|320200057|gb|EFW74646.1| Chromosomal replication initiator protein DnaA [Escherichia coli EC4100B] gi|320641000|gb|EFX10484.1| DNA replication initiation factor [Escherichia coli O157:H7 str. G5101] gi|320646282|gb|EFX15209.1| DNA replication initiation factor [Escherichia coli O157:H- str. 493-89] gi|320651787|gb|EFX20167.1| DNA replication initiation factor [Escherichia coli O157:H- str. H 2687] gi|320657173|gb|EFX24982.1| DNA replication initiation factor [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662779|gb|EFX30111.1| DNA replication initiation factor [Escherichia coli O55:H7 str. USDA 5905] gi|320667583|gb|EFX34498.1| DNA replication initiation factor [Escherichia coli O157:H7 str. LSU-61] gi|323377605|gb|ADX49873.1| DnaA regulatory inactivator Hda [Escherichia coli KO11] gi|326340291|gb|EGD64095.1| Chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. 1125] gi|330912266|gb|EGH40776.1| chromosomal replication initiator protein DnaA [Escherichia coli AA86] gi|331039911|gb|EGI12131.1| DnaA regulatory inactivator Hda [Escherichia coli H736] gi|331043001|gb|EGI15141.1| DnaA regulatory inactivator Hda [Escherichia coli M605] gi|331048770|gb|EGI20846.1| DnaA regulatory inactivator Hda [Escherichia coli M718] gi|331069220|gb|EGI40612.1| DnaA regulatory inactivator Hda [Escherichia coli TA280] gi|331074943|gb|EGI46263.1| DnaA regulatory inactivator Hda [Escherichia coli H591] gi|332100705|gb|EGJ04051.1| DnaA family protein Hda [Shigella sp. D9] gi|332766306|gb|EGJ96516.1| dnaA regulatory inactivator Hda [Shigella flexneri 2930-71] Length = 248 Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 86/231 (37%), Gaps = 13/231 (5%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 N QL + L + S + L G+G+S L + Sbjct: 17 NTPAQLSLPLYLPDDETFASFWPGDNSSLLAALQNVLRQEHSGYIYLWAREGAGRSHLLH 76 Query: 83 IWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHII 130 + + + + K + ++ V +++I+ + ++ +F + Sbjct: 77 AACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCIDNIECIAGDELWEMAIFDLY 136 Query: 131 NSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N I + LL+T P + LPDL SRL + K+ D+ + + R Sbjct: 137 NRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLR 196 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + + ++++R++R + +D++D +++ +T E+LK Sbjct: 197 GFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 247 >gi|300922203|ref|ZP_07138339.1| DnaA regulatory inactivator Hda [Escherichia coli MS 182-1] gi|300421442|gb|EFK04753.1| DnaA regulatory inactivator Hda [Escherichia coli MS 182-1] gi|324020097|gb|EGB89316.1| DnaA regulatory inactivator Hda [Escherichia coli MS 117-3] Length = 257 Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 86/231 (37%), Gaps = 13/231 (5%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 N QL + L + S + L G+G+S L + Sbjct: 26 NTPAQLSLPLYLPDDETFASFWPGDNSSLLAALQNVLRQEHSGYIYLWAREGAGRSHLLH 85 Query: 83 IWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHII 130 + + + + K + ++ V +++I+ + ++ +F + Sbjct: 86 AACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCIDNIECIAGDELWEMAIFDLY 145 Query: 131 NSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N I + LL+T P + LPDL SRL + K+ D+ + + R Sbjct: 146 NRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLR 205 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + + ++++R++R + +D++D +++ +T E+LK Sbjct: 206 GFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 256 >gi|300958876|ref|ZP_07170982.1| DnaA regulatory inactivator Hda [Escherichia coli MS 175-1] gi|300314478|gb|EFJ64262.1| DnaA regulatory inactivator Hda [Escherichia coli MS 175-1] Length = 274 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 86/231 (37%), Gaps = 13/231 (5%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 N QL + L + S + L G+G+S L + Sbjct: 43 NTPAQLSLPLYLPDDETFASFWPGDNSSLLAALQNVLRQEHSGYIYLWAREGAGRSHLLH 102 Query: 83 IWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHII 130 + + + + K + ++ V +++I+ + ++ +F + Sbjct: 103 AACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCIDNIECIAGDELWEMAIFDLY 162 Query: 131 NSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N I + LL+T P + LPDL SRL + K+ D+ + + R Sbjct: 163 NRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLR 222 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + + ++++R++R + +D++D +++ +T E+LK Sbjct: 223 GFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 273 >gi|82777875|ref|YP_404224.1| DNA replication initiation factor [Shigella dysenteriae Sd197] gi|81242023|gb|ABB62733.1| putative DNA replication factor [Shigella dysenteriae Sd197] Length = 248 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 86/231 (37%), Gaps = 13/231 (5%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 N QL + L + S + L G+G+S L + Sbjct: 17 NTPAQLSLPLYLPDDETFASFWPGDNSSLLAALQNVLRQEHSGYIYLWAREGAGRSHLLH 76 Query: 83 IWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHII 130 + + + + K + ++ V +++I+ + ++ +F + Sbjct: 77 AACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCIDNIECIAGDELWEMAIFDLY 136 Query: 131 NSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N I + LL+T P + LPDL SRL + K+ D+ + + R Sbjct: 137 NRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLR 196 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + + ++++R++R + +D++D +++ +T E+LK Sbjct: 197 GFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 247 >gi|71281837|ref|YP_269890.1| hypothetical protein CPS_3194 [Colwellia psychrerythraea 34H] gi|71147577|gb|AAZ28050.1| conserved hypothetical protein [Colwellia psychrerythraea 34H] Length = 235 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 86/231 (37%), Gaps = 22/231 (9%) Query: 27 QLFF--SFPRCLGISRDDLLVHSAIEQAV----RLIDSWPSWPSRVVILVGPSGSGKSCL 80 QL P D + V I+S S P L G S GKS L Sbjct: 6 QLTLMVQLPDDETF---DSFKSDINQGVVTQLKSYIESQQSTPHSF-YLFGLSSVGKSHL 61 Query: 81 ANI---WSDKSRSTRFSNIAKSLDSIL------IDTRKPVLLEDIDLLDFN---DTQLFH 128 + ++ + + L + ++ + L+DI L+ + +F Sbjct: 62 MHASSTYAAQIGKSSVCLSCAELKQLPVEVLDGLEQIDLICLDDIHLIAGDTRWQQAIFD 121 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 + N + + ++ LL++ G+ LPDL SRL ++ DD+ + Sbjct: 122 LFNRVLEQNNYLLISGDESAQQLGISLPDLVSRLTWGLTEQVKPVDDEEKVIALQYRATQ 181 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R +F+ ++ +++ R+ R + +D +D ++ IT EVL Sbjct: 182 RGLFLSDEVVKFLLNRLSRDMGSLINSLDVLDKASIQEQRKITIPFIKEVL 232 >gi|260869185|ref|YP_003235587.1| ATPase regulatory factor Hda [Escherichia coli O111:H- str. 11128] gi|257765541|dbj|BAI37036.1| ATPase regulatory factor Hda [Escherichia coli O111:H- str. 11128] Length = 248 Score = 162 bits (411), Expect = 4e-38, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 86/231 (37%), Gaps = 13/231 (5%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 N QL + L + S + L G+G+S L + Sbjct: 17 NTPAQLSLPLYLPDDETFASFWPGDNSSLLAALQNVLRQEHSGYIYLWAREGAGRSHLLH 76 Query: 83 IWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHII 130 + + + + K + ++ V +++I+ + ++ +F + Sbjct: 77 AACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCIDNIECIAGDELWEMAIFDLY 136 Query: 131 NSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N I + LL+T P + LPDL SRL + K+ D+ + + R Sbjct: 137 NRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLR 196 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + + ++++R++R + +D++D +++ +T E+LK Sbjct: 197 GFELPEDVGRFLLKRLDREMRTLFITLDQLDRASITAQRKLTIPFVKEILK 247 >gi|322420884|ref|YP_004200107.1| Chromosomal replication initiator DnaA [Geobacter sp. M18] gi|320127271|gb|ADW14831.1| Chromosomal replication initiator DnaA [Geobacter sp. M18] Length = 235 Score = 162 bits (411), Expect = 4e-38, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 91/233 (39%), Gaps = 18/233 (7%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW--PSRVVILVGPSGSGKSCLANI 83 QL F FP ++ +V + A + S ++ + GP GSGK+ L Sbjct: 1 MQLIFDFPVVPRFCFENFVVCGGNKTAYQFAQRLASGGDTENLLYVYGPEGSGKTHLLTA 60 Query: 84 WSDKSRSTRFS--------------NIAKSLDSILIDTRKPVLLEDIDLLDFNDT--QLF 127 S + FS L + + +L + L D+ + +L+ Sbjct: 61 LSSECDGRYFSFRDAASLYCGNYRIEGPSRLAELFAGAKALILDDLDLLPDYQEVRVELW 120 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 + N+ + + ++ P L SRL V ++ + DD+ ++ K+ Sbjct: 121 ELFNAFYSAGKKIAISGLAPPKELPHLDGHLTSRLLWGLVARMDVSDDESRRMILKKLAE 180 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 DRQ+ + ++ ++ ++ R + ++ ++ A++ ++ LA E+ K Sbjct: 181 DRQMTLPDEVIDEMLLKVRRDIPSLVYALETINRTAIATKRKVSLRLAKEIFK 233 >gi|127512766|ref|YP_001093963.1| DNA replication initiation factor [Shewanella loihica PV-4] gi|126638061|gb|ABO23704.1| regulatory inactivation of DnaA Hda protein [Shewanella loihica PV-4] Length = 236 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 94/234 (40%), Gaps = 18/234 (7%) Query: 23 NKEEQLFFS--FPRCLGISRDDLLVHSAIEQAVRLIDSWPSW-PSRVVILVGPSGSGKSC 79 + QL P + + ++ + + + ++ V L GP +G++ Sbjct: 4 HSPVQLSLPVYLPDDETFNS--YYPAAGNDELILSLQASAEGRANKAVYLWGPVKAGRTH 61 Query: 80 LANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLF 127 L + ++ S+ L ++ V ++D+D + + + LF Sbjct: 62 LMHATCARANELNRSSFYLPLGIHASISTELLEGLEQLDLVCIDDVDAIAGHPLWEEALF 121 Query: 128 HIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 + N + ++ +L+++A G LPDL SR++ ++ D+ + + Sbjct: 122 DLYNRVAEHKRCALVVSASATASDAGFALPDLVSRMQWGLTYQLQPMADEEKLAALQRRA 181 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 A R + + + + +++ R+ R L ++D++D +L +T E+L+ Sbjct: 182 AMRGLQLPEDVGRFLLNRLARDLRTLFDVLDRLDKASLVHQRKLTIPFVKEMLR 235 >gi|121634846|ref|YP_975091.1| hypothetical protein NMC1040 [Neisseria meningitidis FAM18] gi|161869962|ref|YP_001599131.1| DnaA regulatory inactivator Hda [Neisseria meningitidis 053442] gi|120866552|emb|CAM10302.1| hypothetical protein NMC1040 [Neisseria meningitidis FAM18] gi|161595515|gb|ABX73175.1| DnaA-related protein [Neisseria meningitidis 053442] Length = 243 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 89/223 (39%), Gaps = 11/223 (4%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL F F S D L + + V ++ + + + G G+GKS L W Sbjct: 24 QLIFDFAAHDYPSFDKFL-GTENAELVYVLRHK---HGQFIYVWGEEGAGKSHLLQAWVA 79 Query: 87 KS-----RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL-FHIINSIHQYDSSL 140 ++ + + L + + + ++ ++ L + L F I N Sbjct: 80 QALEAGKNAAYIDAASMPLTDAAFEA-EYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGF 138 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L+ + V DL +R+ V ++ D + M A RQ+ +D ++ Y Sbjct: 139 LLLGSEYTPQQLVIREDLRTRMAYCLVYEVKPLTDQEKIDALASMAAARQVTVDSEIFEY 198 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 +++ R + ++D +DN A++ G IT L ++LK+ + Sbjct: 199 LLKHWRRDMDSLMMMLDTLDNYAVTMGKRITLPLLRQLLKQQE 241 >gi|325926061|ref|ZP_08187424.1| regulatory inactivation of DnaA Hda protein [Xanthomonas perforans 91-118] gi|325543519|gb|EGD14939.1| regulatory inactivation of DnaA Hda protein [Xanthomonas perforans 91-118] Length = 235 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 50/234 (21%), Positives = 88/234 (37%), Gaps = 19/234 (8%) Query: 27 QLFFSFPRCLGISRDDLLVHS---AIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA-N 82 QL + D + + W + L GP+G+GK+ LA + Sbjct: 5 QLPLALRAPPDQRFDSYIAAPDGLLAQLQALAAGHVSDW----LYLSGPAGTGKTHLALS 60 Query: 83 IWSDKSRSTR------FSNIAKSLDSIL--IDTRKPVLLEDIDLLDF---NDTQLFHIIN 131 + + ++ R A L L ++ R V L+ ++ + ++ LF N Sbjct: 61 LCAAAEQAGRTPAYLPLQAAAGRLRDALEALEGRGLVALDGVESIAGRRDDEVALFDFHN 120 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 +LL TAR P + LPDL SRL + + + DD V+ R + Sbjct: 121 RARAAGITLLYTARQMPDGLALVLPDLRSRLSQCIRIGLPVLDDAARGAVLRDRAQRRGL 180 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 +D+ +++ ER L L+D++D +L+ IT V+ Sbjct: 181 ALDEAAIDWLLTHSERELAGLVALLDRLDRESLAAKRRITVPFLRRVVAGMPGP 234 >gi|254673821|emb|CBA09561.1| conserved hypothetical protein [Neisseria meningitidis alpha275] Length = 249 Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 89/223 (39%), Gaps = 11/223 (4%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL F F S D L + + V ++ + + + G G+GKS L W Sbjct: 30 QLIFDFAAHDYPSFDKFL-GTENAELVYVLRHK---HGQFIYVWGEEGAGKSHLLQAWVA 85 Query: 87 KS-----RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL-FHIINSIHQYDSSL 140 ++ + + L + + + ++ ++ L + L F I N Sbjct: 86 QALEAGKNAAYIDAASMPLTDAAFEA-EYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGF 144 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L+ + V DL +R+ V ++ D + M A RQ+ +D ++ Y Sbjct: 145 LLLGSEYTPQQLVIREDLRTRMAYCLVYEVKPLTDQEKIDALASMAAARQVTVDSEIFEY 204 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 +++ R + ++D +DN A++ G IT L ++LK+ + Sbjct: 205 LLKHWRRDMDSLMMMLDTLDNYAVTMGKRITLPLLRQLLKQQE 247 >gi|254796578|ref|YP_003081414.1| hypothetical protein NRI_0184 [Neorickettsia risticii str. Illinois] gi|254589811|gb|ACT69173.1| conserved hypothetical protein [Neorickettsia risticii str. Illinois] Length = 179 Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats. Identities = 53/169 (31%), Positives = 82/169 (48%), Gaps = 7/169 (4%) Query: 68 ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT--Q 125 +L G S SGK+ + +W+ K + SN+ + + ++DID L + Sbjct: 1 MLKGHSKSGKTHIGRVWASKHGADILSNLTEQAHFAI---HNHCFIDDIDKLTTQEEIEA 57 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 L HI NS + LLMT R+ + LPDL SRL+A+ I PDD+ L V K Sbjct: 58 LLHIYNSAIESGKILLMTTRSL--DFSDVLPDLSSRLRASITYSIPPPDDELLRVVTRKQ 115 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234 F Q + +K+ ++QR++RSL V ++ AL +G I+ L Sbjct: 116 FYLYQTRVSEKVVNLVLQRVDRSLEAVVDFVALLNREALHKGKPISARL 164 >gi|190150693|ref|YP_001969218.1| hypothetical protein APP7_1424 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|189915824|gb|ACE62076.1| hypothetical protein APP7_1424 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] Length = 246 Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 98/233 (42%), Gaps = 20/233 (8%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS- 85 QL + + D+ +++ L ++ + G SGKS L S Sbjct: 12 QLPLPIHQVDDETFDNFYAENSLVLLDSLRQNFIDVQQPFFYIWGGKSSGKSHLLKAVSN 71 Query: 86 -----DKSRSTRFSNIAKSLDSILIDTRK---PVLLEDIDLLDFNDT---QLFHIINSIH 134 ++ S ++ +++D + + L+DI ++ N+ +F++ N I Sbjct: 72 HYLLNQQTSSYIPLEKSQYFSPMVLDNAEQLDVICLDDIQIVAGNEEWELAIFNLFNLIR 131 Query: 135 Q--------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 + + + LL++A P + LPDL SRL V +++ DD ++ + Sbjct: 132 EQQSLFGNGHKTLLLISADCPPHQLQINLPDLRSRLTWGEVYQLNDLSDDQKRIILQRNA 191 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + + + ++A ++++R++R L +D++D +L +T E+L Sbjct: 192 YQKGMELSDEVANFLLKRLDRDLQTLSTELDRLDRASLQAQRKLTVPFVKEIL 244 >gi|254427815|ref|ZP_05041522.1| chromosomal replication initiator protein DnaA [Alcanivorax sp. DG881] gi|196193984|gb|EDX88943.1| chromosomal replication initiator protein DnaA [Alcanivorax sp. DG881] Length = 229 Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats. Identities = 51/225 (22%), Positives = 89/225 (39%), Gaps = 13/225 (5%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL + G + D+ AV + R G GKS L Sbjct: 4 QLPLALQLREGNALDNFHAGP-NGAAVAGLHEAVEGVDRQAFFWAGDGQGKSHLLEGAVR 62 Query: 87 KSRSTRFSNIAKSLDSILI---------DTRKPVLLEDIDLLDF---NDTQLFHIINSIH 134 ++ I+ + + ++D L + LFH+ N + Sbjct: 63 LAQHNGLDACLLPASEIIPLVPDVLESMEQFGLLAIDDCQLFAGLPAWEEALFHLYNRLM 122 Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194 LL+TA P + G+ LPDL +RL A V ++ +D+ L+ ++ + R + ++ Sbjct: 123 SLGGRLLVTANASPGAMGLMLPDLATRLAAGPVYRLMSLEDEDLQALLQERARARGLRLE 182 Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 ++A YIV R ERS +L+ +D LAL++ +T + L Sbjct: 183 PEVAHYIVLRSERSAGALMELLSDLDRLALAQQRSVTIPFVKDAL 227 >gi|145633314|ref|ZP_01789045.1| DNA replication initiation factor [Haemophilus influenzae 3655] gi|144986160|gb|EDJ92750.1| DNA replication initiation factor [Haemophilus influenzae 3655] Length = 231 Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 95/228 (41%), Gaps = 13/228 (5%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 +QL + + ++ + + L + + G GSGK+ L +S Sbjct: 3 KQLPLPIHQIDDATLENFYGDNNLLLLDSLCKNSSELKQPFFYIWGDKGSGKTHLLRAFS 62 Query: 86 DKS----RSTRFSNIAKS-----LDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINSI 133 ++ R+ + ++KS ++ ++ V L+D+ + ND +F + N I Sbjct: 63 NEYLIKQRTAIYVPLSKSQYFSTAVLENLEQQELVCLDDLQSVIGNDEWELAIFDLFNRI 122 Query: 134 HQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 +LL+ +A P + V LPDL SRL + +++ D+ +V+ R Sbjct: 123 KASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQLNSLTDEQKVEVLQHTAYQRGFQ 182 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + A +++ R+ R + + +D +D +L +T E+L Sbjct: 183 LSDETANFLITRLARDMHTLFEALDLLDKASLQAQRNLTIPFVKEILN 230 >gi|218548071|ref|YP_002381862.1| DNA replication initiation factor [Escherichia fergusonii ATCC 35469] gi|218355612|emb|CAQ88223.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia fergusonii ATCC 35469] gi|324112986|gb|EGC06962.1| DnaA regulatory inactivator Hda [Escherichia fergusonii B253] gi|325496474|gb|EGC94333.1| DNA replication initiation factor [Escherichia fergusonii ECD227] Length = 241 Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 86/231 (37%), Gaps = 13/231 (5%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 N QL + L + S + L G+G+S L + Sbjct: 10 NTPAQLSLPLYLPDDETFASFWPGDNSSLLAALQNVLRQEHSGYIYLWAREGAGRSHLLH 69 Query: 83 IWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHII 130 + + + + K + ++ V +++I+ + ++ +F + Sbjct: 70 AACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEQLSLVCIDNIECIAGDELWEMAIFDLY 129 Query: 131 NSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N I + LL+T P + LPDL SRL + K+ D+ + + R Sbjct: 130 NRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLR 189 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + + ++++R++R + +D++D +++ +T E+LK Sbjct: 190 GFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 240 >gi|58580923|ref|YP_199939.1| hypothetical protein XOO1300 [Xanthomonas oryzae pv. oryzae KACC10331] gi|84622858|ref|YP_450230.1| hypothetical protein XOO_1201 [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188578097|ref|YP_001915026.1| hypothetical protein PXO_02244 [Xanthomonas oryzae pv. oryzae PXO99A] gi|58425517|gb|AAW74554.1| replication related protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84366798|dbj|BAE67956.1| replication related protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188522549|gb|ACD60494.1| replication related protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 233 Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats. Identities = 52/232 (22%), Positives = 91/232 (39%), Gaps = 19/232 (8%) Query: 27 QLFFSFPRCLGISRDDLLVHS---AIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA-N 82 QL + D + + W + L GP+GSGK+ LA + Sbjct: 5 QLPLALRAPPDQRFDSYIAAPDGLLAQLQALAAGQVSDW----LYLSGPAGSGKTHLALS 60 Query: 83 IWSDKSRSTR------FSNIAKSLDSIL--IDTRKPVLLEDIDLLDF---NDTQLFHIIN 131 + + ++ R A L L ++ R V L+ ++ + ++ LF N Sbjct: 61 LCAAAEQAGRMSAYLPLQAAAGRLRDALEALEGRSLVALDGVESIAGQRDDEVALFDFHN 120 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 +LL TAR P + LPDL SRL + + + DD V+ R + Sbjct: 121 RARAAGITLLYTARQMPNGLALVLPDLRSRLSQCIRIGLPVLDDAARAAVLRDRAQRRGL 180 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 +D+ +++ ER L L+D++D +L+ IT VL++ + Sbjct: 181 AMDEAAIDWLLTHGERELARLVALLDRLDRESLAAKRRITVPFLRRVLEDRR 232 >gi|113869033|ref|YP_727522.1| DnaA regulatory inactivator Hda [Ralstonia eutropha H16] gi|113527809|emb|CAJ94154.1| ATPase involved in DNA replication initiation [Ralstonia eutropha H16] Length = 235 Score = 161 bits (409), Expect = 5e-38, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 98/231 (42%), Gaps = 15/231 (6%) Query: 24 KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW------PSRVVILVGPSGSGK 77 + +QL + ++ +V ++ +AV+ + P+ R+V L G G G+ Sbjct: 4 RPKQLSLELGSPPPSTFENFVV-ASNREAVQRLRELPAALAQEHASDRLVYLWGEVGCGR 62 Query: 78 SCLANIWSDKS-----RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD-FNDTQLFHIIN 131 + L + + RS S D + + ++D++LLD +F + N Sbjct: 63 THLLHALCEAGPQHGIRSRYLSPHHPLSDFLFDPWCQLYTVDDVELLDEARQIAVFSLYN 122 Query: 132 SIHQY-DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 + + ++L++ P + V DL +RL V +++ DD + ++ +R Sbjct: 123 EVRAHVRTALVVAGGLAPRAMPVR-EDLRTRLGWGLVYQVAPLSDDDKKAAVLHAARERG 181 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + + ++ ++V R R + L+D +D +L R +T L E+ E Sbjct: 182 LQLSPEITHWLVTRHYRDMPSLMALLDALDTYSLERKRPVTLPLLREMFAE 232 >gi|261868685|ref|YP_003256607.1| DnaA regulatory inactivator Hda [Aggregatibacter actinomycetemcomitans D11S-1] gi|293391763|ref|ZP_06636097.1| DnaA regulatory inactivator Hda [Aggregatibacter actinomycetemcomitans D7S-1] gi|261414017|gb|ACX83388.1| DnaA regulatory inactivator Hda [Aggregatibacter actinomycetemcomitans D11S-1] gi|290952297|gb|EFE02416.1| DnaA regulatory inactivator Hda [Aggregatibacter actinomycetemcomitans D7S-1] Length = 234 Score = 161 bits (409), Expect = 6e-38, Method: Composition-based stats. Identities = 44/189 (23%), Positives = 80/189 (42%), Gaps = 13/189 (6%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI---------LIDTRKPVLLE 114 + + G GSGKS L + + + L+ ++ + V L+ Sbjct: 44 QQFFYIWGNRGSGKSHLLKAICHHYLTQQRPALYVPLNKAQYFSPAVLENLERQDVVCLD 103 Query: 115 DIDLLDFN---DTQLFHIINSIHQYDSSLL-MTARTFPVSWGVCLPDLCSRLKAATVVKI 170 D+ + N + +F +IN I + +LL M A P + LPDL SRL V ++ Sbjct: 104 DVQEVIGNAEWELAIFDLINRIRETGKTLLLMGADQSPANLAARLPDLHSRLTWGEVYQL 163 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 DD V+ + R I + + A ++ +R+ER + + ++K+D +L + Sbjct: 164 MPLDDAQKIAVLQENAHQRGIELPDETANFLFKRLERDMKTLFEALEKLDQASLQAQRKL 223 Query: 231 TRSLAAEVL 239 T E+L Sbjct: 224 TIPFVKEIL 232 >gi|166711228|ref|ZP_02242435.1| hypothetical protein Xoryp_07090 [Xanthomonas oryzae pv. oryzicola BLS256] Length = 233 Score = 161 bits (409), Expect = 6e-38, Method: Composition-based stats. Identities = 52/232 (22%), Positives = 91/232 (39%), Gaps = 19/232 (8%) Query: 27 QLFFSFPRCLGISRDDLLVHS---AIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA-N 82 QL + D + + W + L GP+GSGK+ LA + Sbjct: 5 QLPLALRAPPDQRFDSYIAAPDGLLAQLQALAAGQVSDW----LYLSGPAGSGKTHLALS 60 Query: 83 IWSDKSRSTR------FSNIAKSLDSIL--IDTRKPVLLEDIDLLDF---NDTQLFHIIN 131 + + ++ R A L L ++ R V L+ ++ + ++ LF N Sbjct: 61 LCAAAEQAGRMSAYLPLQAAAGRLRDALEALEGRSLVALDGVESIAGQRDDEVALFDFHN 120 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 +LL TAR P + LPDL SRL + + + DD V+ R + Sbjct: 121 RARAAGITLLYTARQMPDGLALVLPDLRSRLSQCIRIGLPVLDDAARAAVLRDRAQRRGL 180 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 +D+ +++ ER L L+D++D +L+ IT VL++ + Sbjct: 181 ALDEAAIDWLLTHGERELAGLVALLDRLDRESLAAKRRITVPFLRRVLEDRR 232 >gi|83644734|ref|YP_433169.1| DnaA family protein [Hahella chejuensis KCTC 2396] gi|83632777|gb|ABC28744.1| DnaA family protein [Hahella chejuensis KCTC 2396] Length = 232 Score = 161 bits (409), Expect = 6e-38, Method: Composition-based stats. Identities = 42/230 (18%), Positives = 87/230 (37%), Gaps = 12/230 (5%) Query: 22 KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVI-LVGPSGSGKSCL 80 K++ Q+ + ++ + V+ I + + V + G S GK+ L Sbjct: 3 KSENTQMALRLSNGESATLENFFEPPS-GVVVQSIQRFFTASEDTVFSICGASAQGKTHL 61 Query: 81 ANIWSDKSRSTRFSNIAKS-------LDSILIDTRKPVLLEDIDLLDFN---DTQLFHII 130 + RS + ++ +++ + +DID + + LFH+ Sbjct: 62 LMAACNGFRSEKCFYLSLREYADFGVHVLAGLESFDVLCFDDIDAIAGQPEWEEALFHLF 121 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N + L+T+ P LPDL +RL V++ D+ V+ A+ Sbjct: 122 NRCRERGCKWLITSAEAPSQTPFLLPDLKTRLAWGECVRLPELDEVQRINVLDIKAANIG 181 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + ++ YI++R R L +++++D +L IT V+ Sbjct: 182 FRLSDEVKQYIMRRAPRDLSSLSLILERLDKASLVEKRPITVPFVKSVMN 231 >gi|283786112|ref|YP_003365977.1| DnaA-homolog protein [Citrobacter rodentium ICC168] gi|282949566|emb|CBG89184.1| DnaA-homolog protein [Citrobacter rodentium ICC168] Length = 248 Score = 161 bits (409), Expect = 6e-38, Method: Composition-based stats. Identities = 37/232 (15%), Positives = 88/232 (37%), Gaps = 15/232 (6%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDS-WPSWPSRVVILVGPSGSGKSCLA 81 N QL + + + + S + L G+G+S L Sbjct: 17 NTPAQLSLPLYLPDDETFASFWPGD-NASLLAALQNVLRQEHSGYIYLWSREGAGRSHLL 75 Query: 82 NIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHI 129 + + + + + K + ++ V +++I+ + ++ +F + Sbjct: 76 HAACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEQLSLVCIDNIECVAGDELWEMAIFDL 135 Query: 130 INSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N I + LL+T P + LPDL SRL + K+ D+ + + Sbjct: 136 YNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARL 195 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 R + + + ++++R++R + +D++D+ +++ +T E+LK Sbjct: 196 RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDHASITAQRKLTIPFVKEILK 247 >gi|226326465|ref|ZP_03801983.1| hypothetical protein PROPEN_00313 [Proteus penneri ATCC 35198] gi|225205064|gb|EEG87418.1| hypothetical protein PROPEN_00313 [Proteus penneri ATCC 35198] Length = 235 Score = 161 bits (409), Expect = 6e-38, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 90/233 (38%), Gaps = 17/233 (7%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW--PSWPSRVVILVGPSGSGKSCL 80 N QL + D V I + S + G GKS L Sbjct: 4 NTPSQLSLPLSLPDDETFDSFYAGE-NASLVAAIRTAIHQS-HGSYIYFWSRDGGGKSHL 61 Query: 81 ANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFH 128 + K + + + K + ++ V ++++ + ++ LF+ Sbjct: 62 LHAACAELSLKGDAVGYVPLDKRAYFVPDVLEGMEHLSLVCIDNVQCIAGDEEWELALFN 121 Query: 129 IINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 + N + ++ + LL+T P + LPDL SRL + ++ D+ + + Sbjct: 122 LYNRVLEHGRTCLLITGDRPPRQIELQLPDLASRLDWGQIYRLQPLSDEEKIQALQLRAK 181 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 R + + + ++++R++R + +++D++D+ ++ +T ++LK Sbjct: 182 LRGFELPEDVGRFVLKRLDRKMRTLFEMLDELDHASIVAQRKLTIPFVKDILK 234 >gi|237732473|ref|ZP_04562954.1| DNA replication initiation factor [Citrobacter sp. 30_2] gi|283832129|ref|ZP_06351870.1| DnaA regulatory inactivator Hda [Citrobacter youngae ATCC 29220] gi|226908012|gb|EEH93930.1| DNA replication initiation factor [Citrobacter sp. 30_2] gi|291071759|gb|EFE09868.1| DnaA regulatory inactivator Hda [Citrobacter youngae ATCC 29220] Length = 241 Score = 161 bits (409), Expect = 6e-38, Method: Composition-based stats. Identities = 39/231 (16%), Positives = 86/231 (37%), Gaps = 13/231 (5%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 N QL + L + S + L G+G+S L + Sbjct: 10 NTPAQLSLPLYLPDDETFASFWPGDNSSLLAALQNVLRQEHSGYIYLWSREGAGRSHLLH 69 Query: 83 IWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFHII 130 + + + LD ++ V +++I+ + + + +F + Sbjct: 70 AACAELSARGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCIDNIECVAGDSLWEMAIFDLY 129 Query: 131 NSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N I + LL+T P + LPDL SRL + K+ D+ + + R Sbjct: 130 NRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLR 189 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + + ++++R++R + +D++D+ +++ +T E+LK Sbjct: 190 GFELPEDVGRFLLKRLDREMRTLFMTLDQLDHASITAQRKLTIPFVKEILK 240 >gi|269849587|sp|B7LKE6|HDA_ESCF3 RecName: Full=DnaA-homolog protein hda Length = 233 Score = 161 bits (409), Expect = 7e-38, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 86/231 (37%), Gaps = 13/231 (5%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 N QL + L + S + L G+G+S L + Sbjct: 2 NTPAQLSLPLYLPDDETFASFWPGDNSSLLAALQNVLRQEHSGYIYLWAREGAGRSHLLH 61 Query: 83 IWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHII 130 + + + + K + ++ V +++I+ + ++ +F + Sbjct: 62 AACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEQLSLVCIDNIECIAGDELWEMAIFDLY 121 Query: 131 NSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N I + LL+T P + LPDL SRL + K+ D+ + + R Sbjct: 122 NRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLR 181 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + + ++++R++R + +D++D +++ +T E+LK Sbjct: 182 GFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 232 >gi|192361067|ref|YP_001982112.1| DnaA family protein [Cellvibrio japonicus Ueda107] gi|190687232|gb|ACE84910.1| DnaA family protein [Cellvibrio japonicus Ueda107] Length = 239 Score = 161 bits (409), Expect = 7e-38, Method: Composition-based stats. Identities = 40/232 (17%), Positives = 84/232 (36%), Gaps = 17/232 (7%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSA---IEQAVRLIDSWPSW-PSRVVILVGPSGSGKSCL 80 QL + D+ ++ V + V L G G+G + L Sbjct: 6 PRQLSLGVSLNDDATFDNFYAPASQHHNALVVDGLRRQVEGKAEAFVYLWGAPGAGLTHL 65 Query: 81 ANIWS--DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN-----------DTQLF 127 ++ + + V LE +DL+ + + +F Sbjct: 66 LQASCHYAQTLGQSIQYLPLRDMAGYAPAELFVGLEALDLVCLDCLTSIAGRGDWELAIF 125 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 ++ N++ LL+ A P + L DL SRL+ ++ D+ ++ + K Sbjct: 126 NLYNALRDGGKKLLVAAEQSPRELPLQLEDLRSRLQWGVTYQVHSLSDEDKQQALQKRAR 185 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + ++ ++A +I+QR+ R + ++D +L+ +T +VL Sbjct: 186 ARGLELNDEVAQFIIQRLPRDTNELFCQLQRLDQASLAEQRKLTIPFVKKVL 237 >gi|53728974|ref|ZP_00134440.2| COG0593: ATPase involved in DNA replication initiation [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208837|ref|YP_001054062.1| DNA replication initiation factor [Actinobacillus pleuropneumoniae L20] gi|165976798|ref|YP_001652391.1| DNA replication initiation factor [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|303250541|ref|ZP_07336738.1| DNA replication initiation factor [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303253536|ref|ZP_07339675.1| DNA replication initiation factor [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307246294|ref|ZP_07528375.1| hypothetical protein appser1_14980 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307248407|ref|ZP_07530430.1| hypothetical protein appser2_13830 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307250635|ref|ZP_07532575.1| hypothetical protein appser4_14110 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307253015|ref|ZP_07534902.1| hypothetical protein appser6_15250 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307255278|ref|ZP_07537093.1| hypothetical protein appser9_15130 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307257441|ref|ZP_07539210.1| hypothetical protein appser10_14380 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307259713|ref|ZP_07541436.1| hypothetical protein appser11_15100 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307261861|ref|ZP_07543525.1| hypothetical protein appser12_14200 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307264043|ref|ZP_07545643.1| hypothetical protein appser13_14480 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|126097629|gb|ABN74457.1| hypothetical protein APL_1373 [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165876899|gb|ABY69947.1| ATPase involved in DNA replication initiation [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|302647646|gb|EFL77863.1| DNA replication initiation factor [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302650529|gb|EFL80688.1| DNA replication initiation factor [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306852903|gb|EFM85127.1| hypothetical protein appser1_14980 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306855145|gb|EFM87325.1| hypothetical protein appser2_13830 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306857338|gb|EFM89454.1| hypothetical protein appser4_14110 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306859544|gb|EFM91570.1| hypothetical protein appser6_15250 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306861827|gb|EFM93806.1| hypothetical protein appser9_15130 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306864093|gb|EFM96007.1| hypothetical protein appser10_14380 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306866253|gb|EFM98118.1| hypothetical protein appser11_15100 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306868478|gb|EFN00291.1| hypothetical protein appser12_14200 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306870654|gb|EFN02398.1| hypothetical protein appser13_14480 [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 236 Score = 161 bits (409), Expect = 7e-38, Method: Composition-based stats. Identities = 44/234 (18%), Positives = 98/234 (41%), Gaps = 20/234 (8%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 QL + + D+ +++ L ++ + G SGKS L S Sbjct: 1 MQLPLPIHQVDDETFDNFYAENSLVLLDSLRQNFIDVQQPFFYIWGGKSSGKSHLLKAVS 60 Query: 86 ------DKSRSTRFSNIAKSLDSILIDTRK---PVLLEDIDLLDFNDT---QLFHIINSI 133 ++ S ++ +++D + + L+DI ++ N+ +F++ N I Sbjct: 61 NHYLLNQQTSSYIPLEKSQYFSPMVLDNAEQLDVICLDDIQIVAGNEEWELAIFNLFNLI 120 Query: 134 HQ--------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 + + + LL++A P + LPDL SRL V +++ DD ++ + Sbjct: 121 REQQSLFGNGHKTLLLISADCPPHQLQINLPDLRSRLTWGEVYQLNDLSDDQKRIILQRN 180 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + + + ++A ++++R++R L +D++D +L +T E+L Sbjct: 181 AYQKGMELSDEVANFLLKRLDRDLQTLSTELDRLDRASLQAQRKLTVPFVKEIL 234 >gi|226524737|ref|NP_416991.2| ATPase regulatory factor involved in DnaA inactivation [Escherichia coli str. K-12 substr. MG1655] gi|293405931|ref|ZP_06649923.1| DNA replication initiation factor [Escherichia coli FVEC1412] gi|293410891|ref|ZP_06654467.1| DnaA regulatory inactivator Hda [Escherichia coli B354] gi|293446849|ref|ZP_06663271.1| DnaA regulatory inactivator Hda [Escherichia coli B088] gi|298381680|ref|ZP_06991279.1| DNA replication initiation factor [Escherichia coli FVEC1302] gi|269849566|sp|A7ZPT9|HDA_ECO24 RecName: Full=DnaA-homolog protein hda gi|269849567|sp|B7UGN4|HDA_ECO27 RecName: Full=DnaA-homolog protein hda gi|269849568|sp|B7MHX7|HDA_ECO45 RecName: Full=DnaA-homolog protein hda gi|269849569|sp|B7LCN6|HDA_ECO55 RecName: Full=DnaA-homolog protein hda gi|269849570|sp|P69933|HDA_ECO57 RecName: Full=DnaA-homolog protein hda gi|269849571|sp|B5Z033|HDA_ECO5E RecName: Full=DnaA-homolog protein hda gi|269849572|sp|B7NQN5|HDA_ECO7I RecName: Full=DnaA-homolog protein hda gi|269849573|sp|B7MYC3|HDA_ECO81 RecName: Full=DnaA-homolog protein hda gi|269849574|sp|B7M7K0|HDA_ECO8A RecName: Full=DnaA-homolog protein hda gi|269849575|sp|C4ZX71|HDA_ECOBW RecName: Full=DnaA-homolog protein hda gi|269849576|sp|B1XAX1|HDA_ECODH RecName: Full=DnaA-homolog protein hda gi|269849577|sp|A8A2Y8|HDA_ECOHS RecName: Full=DnaA-homolog protein hda gi|269849578|sp|A1ADY9|HDA_ECOK1 RecName: Full=DnaA-homolog protein hda gi|269849579|sp|Q0TEZ2|HDA_ECOL5 RecName: Full=DnaA-homolog protein hda gi|269849580|sp|P69932|HDA_ECOL6 RecName: Full=DnaA-homolog protein hda gi|269849581|sp|B1IWG4|HDA_ECOLC RecName: Full=DnaA-homolog protein hda gi|269849582|sp|P69931|HDA_ECOLI RecName: Full=DnaA-homolog protein hda gi|269849583|sp|B7N678|HDA_ECOLU RecName: Full=DnaA-homolog protein hda gi|269849584|sp|B6I568|HDA_ECOSE RecName: Full=DnaA-homolog protein hda gi|269849585|sp|B1LNE6|HDA_ECOSM RecName: Full=DnaA-homolog protein hda gi|269849586|sp|Q1R8P2|HDA_ECOUT RecName: Full=DnaA-homolog protein hda gi|269849588|sp|B2TXS1|HDA_SHIB3 RecName: Full=DnaA-homolog protein hda gi|269849589|sp|Q31XZ6|HDA_SHIBS RecName: Full=DnaA-homolog protein hda gi|269849590|sp|Q32D72|HDA_SHIDS RecName: Full=DnaA-homolog protein hda gi|269849591|sp|Q0T224|HDA_SHIF8 RecName: Full=DnaA-homolog protein hda gi|269849592|sp|P69934|HDA_SHIFL RecName: Full=DnaA-homolog protein hda gi|269849593|sp|Q3YZ56|HDA_SHISS RecName: Full=DnaA-homolog protein hda gi|226510964|gb|AAC75549.2| ATPase regulatory factor involved in DnaA inactivation [Escherichia coli str. K-12 substr. MG1655] gi|291323679|gb|EFE63107.1| DnaA regulatory inactivator Hda [Escherichia coli B088] gi|291428139|gb|EFF01166.1| DNA replication initiation factor [Escherichia coli FVEC1412] gi|291471359|gb|EFF13843.1| DnaA regulatory inactivator Hda [Escherichia coli B354] gi|298279122|gb|EFI20636.1| DNA replication initiation factor [Escherichia coli FVEC1302] Length = 233 Score = 161 bits (408), Expect = 9e-38, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 86/231 (37%), Gaps = 13/231 (5%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 N QL + L + S + L G+G+S L + Sbjct: 2 NTPAQLSLPLYLPDDETFASFWPGDNSSLLAALQNVLRQEHSGYIYLWAREGAGRSHLLH 61 Query: 83 IWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHII 130 + + + + K + ++ V +++I+ + ++ +F + Sbjct: 62 AACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCIDNIECIAGDELWEMAIFDLY 121 Query: 131 NSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N I + LL+T P + LPDL SRL + K+ D+ + + R Sbjct: 122 NRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLR 181 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + + ++++R++R + +D++D +++ +T E+LK Sbjct: 182 GFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 232 >gi|52425933|ref|YP_089070.1| DNA replication initiation factor [Mannheimia succiniciproducens MBEL55E] gi|52307985|gb|AAU38485.1| DnaA protein [Mannheimia succiniciproducens MBEL55E] Length = 232 Score = 161 bits (407), Expect = 9e-38, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 98/228 (42%), Gaps = 13/228 (5%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI- 83 E QL + + D+ V L + + + G GSGKS L Sbjct: 3 EHQLPLPIHQIDDETLDNFFVGHNDLLVDSLSKNIACLKQQFFYVWGAEGSGKSHLLKAV 62 Query: 84 ---WSDKSRSTRFSNIAKS-----LDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINS 132 + ++R + ++KS ++ + V L+D+ L+ N+ +F + N Sbjct: 63 SNQFLLQNRPAIYVPLSKSQYFSPAVLENLEYQDAVCLDDLQLVVGNEEWEIAIFDLFNR 122 Query: 133 IHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 I + +++LL+ +A P + + LPDL SRL + +++ D+ V+ + +R I Sbjct: 123 IKEKENTLLLISANQSPNALPIKLPDLASRLTWGEIYHLNVFTDEEKILVLQRNAHERGI 182 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + + A ++++R++R + + K+D +L +T E L Sbjct: 183 ELPDETANFLLKRLDRDMHTLFDALLKLDKASLQAQRKLTIPFVKETL 230 >gi|152981564|ref|YP_001354562.1| hypothetical protein mma_2872 [Janthinobacterium sp. Marseille] gi|151281641|gb|ABR90051.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 223 Score = 161 bits (407), Expect = 9e-38, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 81/224 (36%), Gaps = 8/224 (3%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW-----PSRVVILVGPSGSGKSCL 80 QL P + D +V + + +L+ + R V L G +G+GK+ L Sbjct: 2 RQLLLDLPAEKPQTLDSFVVGT-NAELAQLLQRLAAGQPNGLDERFVYLWGEAGAGKTHL 60 Query: 81 ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN-DTQLFHIINSIHQYDSS 139 ++ + + A + D + LL+D L + F + N + + Sbjct: 61 LRAMAETPHARYLDSDAGTDDFLYDSATTLYLLDDSHKLTPDAQIAAFALFNQVREQGGC 120 Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199 LL P S V DL +R + ++ DD + R + + + Sbjct: 121 LLAAGNAAPASLTVR-EDLRTRFGWGLIYQVHGLSDDEKIAALTHAAGARGLTLSPGVLP 179 Query: 200 YIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 Y++ R + ++D +D +L IT L E+L+ Sbjct: 180 YLITHFARDMRSLSAMLDALDQYSLETKRPITLPLLRELLQRQD 223 >gi|94311844|ref|YP_585054.1| DnaA regulatory inactivator Hda [Cupriavidus metallidurans CH34] gi|93355696|gb|ABF09785.1| ATPase regulatory factor involved in DnaA inactivation [Cupriavidus metallidurans CH34] Length = 235 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 44/234 (18%), Positives = 98/234 (41%), Gaps = 15/234 (6%) Query: 24 KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPS------WPSRVVILVGPSGSGK 77 +++QL + ++ V +A ++V+ + P R++ L G GSG+ Sbjct: 4 RQKQLSLELGSPPPSTFENFFV-AANRESVQRLRELPGLVAREQATDRLIYLWGEIGSGR 62 Query: 78 SCLANIWSDKS-----RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD-FNDTQLFHIIN 131 + L + D + S D + + + ++D++LLD +F + N Sbjct: 63 THLLHAVCDAALHTGLNCRYLSPHHALSDFMFDPSCQIYTVDDVELLDEARQIAVFSLYN 122 Query: 132 SIHQY-DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 + + +L++ P + V DL +RL V ++ D+ +++ +R Sbjct: 123 EVRAHVRCALVVAGGLAPRAMPVR-EDLRTRLGWGLVYQVESLSDEDKMAALLQAARERG 181 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 + + ++ ++V R R + L+D +D +L R +T L E+ E ++ Sbjct: 182 LQLSPEIPHWLVTRHYRDMPSLMALLDALDTYSLERKRAVTLPLLREMFAEFRE 235 >gi|322515535|ref|ZP_08068519.1| DnaA regulatory inactivator Hda [Actinobacillus ureae ATCC 25976] gi|322118425|gb|EFX90682.1| DnaA regulatory inactivator Hda [Actinobacillus ureae ATCC 25976] Length = 236 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 41/234 (17%), Positives = 96/234 (41%), Gaps = 20/234 (8%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 QL + + D+ +++ L ++ + G SGKS L S Sbjct: 1 MQLPLPIHQVDDETFDNFYAENSLVLLDSLRQNFVDVQQPFFYIWGGKSSGKSHLLKAVS 60 Query: 86 ------DKSRSTRFSNIAKSLDSILIDTRK---PVLLEDIDLLDFNDT---QLFHIINSI 133 ++ S ++ +++D + + L+D+ ++ ++ +F++ N I Sbjct: 61 NHYLLNQQTSSYIPLEKSQYFSPMVLDNAEQLDVICLDDLQVVAGDEAWELAIFNLFNQI 120 Query: 134 HQYDSS--------LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 + LL++A P + LPDL SRL V +++ D+ ++ + Sbjct: 121 REQQGLFGSGHKTLLLISADCPPHQLKINLPDLRSRLTWGEVYQLNDLSDEQKRIILQRN 180 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + + + ++A ++++R++R L +D++D +L +T E+L Sbjct: 181 AYQKGMELSDEVANFLLKRLDRDLQTLSTELDRLDRASLQAQRKLTVPFVKEIL 234 >gi|294664601|ref|ZP_06729941.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605629|gb|EFF48940.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 233 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 51/231 (22%), Positives = 90/231 (38%), Gaps = 19/231 (8%) Query: 27 QLFFSFPRCLGISRDDLLVHS---AIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA-N 82 QL + D + + W + L GP+G+GK+ LA + Sbjct: 5 QLPLALRAPPDQRFDSYIAAPDGLLAQLQALAAGQVSDW----LYLSGPAGTGKTHLALS 60 Query: 83 IWSDKSRSTR------FSNIAKSLDSIL--IDTRKPVLLEDIDLLDF---NDTQLFHIIN 131 + + ++ R A L L ++ R V L+ ++ + ++ LF N Sbjct: 61 LCAAAEQAGRTPAYLPLQAAAGRLRDALEALEGRSLVALDGVESIAGQRDDEVALFDFHN 120 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 +LL TAR P + LPDL SRL + + + DD V+ R + Sbjct: 121 RARAAGITLLYTARQMPDGLALVLPDLRSRLSQCIRIGLPVLDDAARAAVLRDRAQRRGL 180 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +D+ +++ ER L L+D++D +L+ IT VL++ Sbjct: 181 ALDEAAIDWLLTHSERELAALVALLDRLDRESLAAKRRITVPFLRRVLEDL 231 >gi|325924382|ref|ZP_08185921.1| regulatory inactivation of DnaA Hda protein [Xanthomonas gardneri ATCC 19865] gi|325545143|gb|EGD16458.1| regulatory inactivation of DnaA Hda protein [Xanthomonas gardneri ATCC 19865] Length = 233 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 52/229 (22%), Positives = 91/229 (39%), Gaps = 19/229 (8%) Query: 27 QLFFSFPRCLGISRDDLLVHS---AIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA-N 82 QL + D + + W + L GP+G+GK+ LA + Sbjct: 5 QLPLALRAPPDQRFDSYIAAPEGLLAQLQALAAGQVSDW----LYLAGPAGTGKTHLALS 60 Query: 83 IWSDKSRSTR------FSNIAKSLDSIL--IDTRKPVLLEDIDLLDF---NDTQLFHIIN 131 + + ++ R A L L ++ R V+L+ +D + ++ LF N Sbjct: 61 LCAAAEQAGRASAYLPLHAAAGRLRDALEALEGRSLVVLDGLDTIAGQRDDEVALFDFHN 120 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 ++LL TAR P + LPDL SRL + + + DD V+ R + Sbjct: 121 RARAAGTTLLYTARQMPDGLALVLPDLRSRLSQCIRISLPVLDDAGRAAVLRDRAQRRGL 180 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 +D+ +++ ER L L+D++D +L+ IT VL+ Sbjct: 181 ALDEAAIDWLLIHSERELAGLVALLDRLDRESLAAKRRITVPFLRRVLE 229 >gi|260913124|ref|ZP_05919606.1| DnaA regulatory inactivator Hda [Pasteurella dagmatis ATCC 43325] gi|260632711|gb|EEX50880.1| DnaA regulatory inactivator Hda [Pasteurella dagmatis ATCC 43325] Length = 232 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 43/190 (22%), Positives = 87/190 (45%), Gaps = 13/190 (6%) Query: 64 SRVVILVGPSGSGKSCLANIWSD----KSRSTRFSNIAKS-----LDSILIDTRKPVLLE 114 + + G SGKS L S+ + R + + KS ++ ++ V L+ Sbjct: 42 QQFFYIWGEQSSGKSHLLKAISNHFFLQQRPAIYVPLEKSCYFSPAVLENLEYQQLVCLD 101 Query: 115 DIDLLDFNDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKI 170 D+ + ND +F + N I + +LL+ +A P + V LPDL SRL+ + ++ Sbjct: 102 DLHTVIGNDEWELAIFDLFNRIKEIGKTLLLISANQSPTALPVKLPDLASRLRWGEIYQL 161 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 + D +V+ + +R I + + + ++++R+ER + + ++D +L + Sbjct: 162 TPLTDIQKIQVLQQHAKERGIELPDETSNFLLKRLERDMQTLLDALTQLDQASLQAQRKL 221 Query: 231 TRSLAAEVLK 240 T E+LK Sbjct: 222 TIPFVKEILK 231 >gi|261400250|ref|ZP_05986375.1| DnaA regulatory inactivator Hda [Neisseria lactamica ATCC 23970] gi|313668273|ref|YP_004048557.1| hypothetical protein NLA_9620 [Neisseria lactamica ST-640] gi|269210054|gb|EEZ76509.1| DnaA regulatory inactivator Hda [Neisseria lactamica ATCC 23970] gi|313005735|emb|CBN87189.1| hypothetical protein NLA_9620 [Neisseria lactamica 020-06] Length = 222 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 88/223 (39%), Gaps = 11/223 (4%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL F F D L + + V ++ + + + G G+GKS L W Sbjct: 3 QLIFDFAAHDYPGFDKFL-GTENAELVYVLRHK---HGQFIYVWGEEGAGKSHLLQAWVA 58 Query: 87 KS-----RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL-FHIINSIHQYDSSL 140 ++ + + L + + + ++ ++ L + L F I N Sbjct: 59 QALEAGKNAAYIDAASMPLTDAAFEA-EYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGF 117 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L+ + V DL +R+ V ++ D + M A RQ+ +D ++ Y Sbjct: 118 LLLGSEYTPQQLVIREDLRTRMAYCLVYEVKPLTDQEKIDALASMAAARQVTVDSEIFEY 177 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 +++ R + ++D +DN A++ G IT L ++LK+ + Sbjct: 178 LLKHWRRDMDSLMMMLDTLDNYAVTMGKRITLPLLRQLLKQQE 220 >gi|21243683|ref|NP_643265.1| hypothetical protein XAC2956 [Xanthomonas axonopodis pv. citri str. 306] gi|21109263|gb|AAM37801.1| replication related protein [Xanthomonas axonopodis pv. citri str. 306] Length = 233 Score = 160 bits (406), Expect = 2e-37, Method: Composition-based stats. Identities = 51/230 (22%), Positives = 90/230 (39%), Gaps = 19/230 (8%) Query: 27 QLFFSFPRCLGISRDDLLVHS---AIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA-N 82 QL + D + + W + L GP+G+GK+ LA + Sbjct: 5 QLPLALRAPPDQRFDSYIAAPDGLLAQLQALAAGQVSDW----LYLSGPAGTGKTHLALS 60 Query: 83 IWSDKSRSTR------FSNIAKSLDSIL--IDTRKPVLLEDIDLLDF---NDTQLFHIIN 131 + + ++ R A L L ++ R V L+ ++ + ++ LF N Sbjct: 61 LCAAAEQAGRTPAYLPLQAAAGRLRDALEALEGRSLVALDGVESIAGQRDDEVALFDFHN 120 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 +LL TAR P + LPDL SRL + + + DD V+ R + Sbjct: 121 RARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDAARAAVLRDRAQRRGL 180 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 +D+ +++ ER L L+D++D +L+ IT VL++ Sbjct: 181 ALDEAAIDWLLTHSERELAALVALLDRLDRESLAAKRRITVPFLRRVLED 230 >gi|301154665|emb|CBW14127.1| ATPase regulatory factor involved in DnaA inactivation [Haemophilus parainfluenzae T3T1] Length = 231 Score = 160 bits (406), Expect = 2e-37, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 76/189 (40%), Gaps = 13/189 (6%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS---------ILIDTRKPVLLE 114 + L G GK+ L K + S I L ++ ++ V L+ Sbjct: 41 QQFFYLWGNQSVGKTHLLRALCHKYIQQQRSAIYVPLSKSQYFSTAVFENLEQQELVCLD 100 Query: 115 DIDLLDFN---DTQLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKI 170 D+ + N + LF + N I +LL+ +A P + V LPDL SRLK ++ Sbjct: 101 DLQAVIGNSEWEIALFDLFNCIKANGKTLLVVSAEQSPTALPVKLPDLASRLKWGESYQL 160 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 D+ V+ + R I + A +I R++R + ++ + ++D +L + Sbjct: 161 IPLSDEQKLAVLKQNAHQRGIMLSDDTANFIFTRLDRDMATLKEALVQLDKASLQAKRNL 220 Query: 231 TRSLAAEVL 239 T +L Sbjct: 221 TIPFVKSIL 229 >gi|68250242|ref|YP_249354.1| DNA replication initiation factor [Haemophilus influenzae 86-028NP] gi|68058441|gb|AAX88694.1| predicted ATPase involved in DNA replication initiation [Haemophilus influenzae 86-028NP] Length = 231 Score = 160 bits (406), Expect = 2e-37, Method: Composition-based stats. Identities = 42/190 (22%), Positives = 84/190 (44%), Gaps = 13/190 (6%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKS----RSTRFSNIAKS-----LDSILIDTRKPVLLE 114 + G GSGK+ L +S++ R+ + ++KS ++ ++ V L+ Sbjct: 41 QPFFYIWGDKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQYFSTAVLENLEQQELVCLD 100 Query: 115 DIDLLDFNDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKI 170 D+ + ND +F + N I +LL+ +A P + V LPDL SRL + ++ Sbjct: 101 DLQSVIGNDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQL 160 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 + D+ +V+ R + + A +++ R+ R + + +D +D +L + Sbjct: 161 NSLTDEQKVEVLQHTAYQRGFQLSDETANFLITRLARDMHTLFEALDLLDKASLQAQRNL 220 Query: 231 TRSLAAEVLK 240 T E+L Sbjct: 221 TIPFVKEILN 230 >gi|311278596|ref|YP_003940827.1| DnaA regulatory inactivator Hda [Enterobacter cloacae SCF1] gi|308747791|gb|ADO47543.1| DnaA regulatory inactivator Hda [Enterobacter cloacae SCF1] Length = 248 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 36/231 (15%), Positives = 90/231 (38%), Gaps = 17/231 (7%) Query: 25 EEQLFFSFPRCLGISRDDLLVH--SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 QL + ++ A++ + S + L G+G+S L + Sbjct: 19 PAQLSLPLYLPDDETFTSFWPGDNPSLLAALQTMLRQEH--SGYIYLWSREGAGRSHLLH 76 Query: 83 IWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDTQ---LFHII 130 + + + + K + ++ V +++I+ + ++ +F++ Sbjct: 77 AACAELSQRGDAVGYVPLDKRTWFVPEVLEGMEHLALVCIDNIECIAGDEPWEMGIFNLY 136 Query: 131 NSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N I + LL+T P + L DL SRL + K+ D+ + + R Sbjct: 137 NRILESGKTRLLITGDRPPRQLKLGLADLASRLDWGQIYKLQPLSDEDKLQALQLRARLR 196 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + + ++++R++R + + +D++D +++ +T E+LK Sbjct: 197 GFEMPEDVCRFLLKRLDREMRSLFQTLDQLDRASITAQRKLTIPFVKEILK 247 >gi|59801246|ref|YP_207958.1| hypothetical protein NGO0841 [Neisseria gonorrhoeae FA 1090] gi|194098531|ref|YP_002001593.1| DnaA regulatory inactivator Hda [Neisseria gonorrhoeae NCCP11945] gi|239998920|ref|ZP_04718844.1| hypothetical protein Ngon3_05471 [Neisseria gonorrhoeae 35/02] gi|240014169|ref|ZP_04721082.1| hypothetical protein NgonD_05917 [Neisseria gonorrhoeae DGI18] gi|240016604|ref|ZP_04723144.1| hypothetical protein NgonFA_05473 [Neisseria gonorrhoeae FA6140] gi|240112839|ref|ZP_04727329.1| hypothetical protein NgonM_04542 [Neisseria gonorrhoeae MS11] gi|240115595|ref|ZP_04729657.1| hypothetical protein NgonPID1_04995 [Neisseria gonorrhoeae PID18] gi|240121732|ref|ZP_04734694.1| hypothetical protein NgonPI_08222 [Neisseria gonorrhoeae PID24-1] gi|240123447|ref|ZP_04736403.1| hypothetical protein NgonP_05800 [Neisseria gonorrhoeae PID332] gi|240125692|ref|ZP_04738578.1| hypothetical protein NgonSK_05633 [Neisseria gonorrhoeae SK-92-679] gi|240128149|ref|ZP_04740810.1| hypothetical protein NgonS_05807 [Neisseria gonorrhoeae SK-93-1035] gi|254493704|ref|ZP_05106875.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|260440595|ref|ZP_05794411.1| DnaA regulatory inactivator Hda [Neisseria gonorrhoeae DGI2] gi|268594762|ref|ZP_06128929.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268598915|ref|ZP_06133082.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268601269|ref|ZP_06135436.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|268682070|ref|ZP_06148932.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268684280|ref|ZP_06151142.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|268686538|ref|ZP_06153400.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|291043900|ref|ZP_06569616.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|293399108|ref|ZP_06643273.1| DnaA regulatory inactivator Hda [Neisseria gonorrhoeae F62] gi|59718141|gb|AAW89546.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090] gi|193933821|gb|ACF29645.1| DnaA-related protein [Neisseria gonorrhoeae NCCP11945] gi|226512744|gb|EEH62089.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268548151|gb|EEZ43569.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268583046|gb|EEZ47722.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268585400|gb|EEZ50076.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|268622354|gb|EEZ54754.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268624564|gb|EEZ56964.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|268626822|gb|EEZ59222.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|291012363|gb|EFE04352.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|291610522|gb|EFF39632.1| DnaA regulatory inactivator Hda [Neisseria gonorrhoeae F62] gi|317164209|gb|ADV07750.1| DnaA regulatory inactivator Hda [Neisseria gonorrhoeae TCDC-NG08107] Length = 222 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 88/223 (39%), Gaps = 11/223 (4%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL F F S D L + + V ++ + + G G+GKS L W Sbjct: 3 QLIFDFAAHDYPSFDKFL-GTENAELVYVLQHKHD---PFIYVWGEEGAGKSHLLQAWVA 58 Query: 87 KS-----RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL-FHIINSIHQYDSSL 140 ++ + + L + + + ++ ++ L + L F I N Sbjct: 59 QALEAGKNAAYIDAASMPLTDAAFEA-EYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGF 117 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L+ + V DL +R+ V ++ D + M A RQ+ +D ++ Y Sbjct: 118 LLLGSEYTPQQLVIREDLRTRMAYCLVYEVKPLTDQEKIDALANMAAARQVTVDSEIFEY 177 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 +++ R + ++D +DN A++ G IT L ++LK+ + Sbjct: 178 LLKHWRRDMDSLMMMLDTLDNYAVTMGKRITLPLLRQLLKQQE 220 >gi|294626251|ref|ZP_06704854.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292599397|gb|EFF43531.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 233 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 51/230 (22%), Positives = 90/230 (39%), Gaps = 19/230 (8%) Query: 27 QLFFSFPRCLGISRDDLLVHS---AIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA-N 82 QL + D + + W + L GP+G+GK+ LA + Sbjct: 5 QLPLALRAPPDQRFDSYIAAPDGLLAQLQALAAGQVSDW----LYLSGPAGTGKTHLALS 60 Query: 83 IWSDKSRSTR------FSNIAKSLDSIL--IDTRKPVLLEDIDLLDF---NDTQLFHIIN 131 + + ++ R A L L ++ R V L+ ++ + ++ LF N Sbjct: 61 LCAAAEQAGRTPAYLPLQAAAGRLRDALEALEGRSLVALDGVESIAGQRDDEVALFDFHN 120 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 +LL TAR P + LPDL SRL + + + DD V+ R + Sbjct: 121 RARAAGITLLYTARQMPDGLALVLPDLRSRLSQCIRIGLPVLDDAARAAVLRDRAQRRGL 180 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 +D+ +++ ER L L+D++D +L+ IT VL++ Sbjct: 181 ALDEAAIDWLLTHRERELAALVDLLDRLDRESLAAKRRITVPFLRRVLED 230 >gi|296314280|ref|ZP_06864221.1| DnaA regulatory inactivator Hda [Neisseria polysaccharea ATCC 43768] gi|296839079|gb|EFH23017.1| DnaA regulatory inactivator Hda [Neisseria polysaccharea ATCC 43768] Length = 222 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 90/223 (40%), Gaps = 11/223 (4%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL F F S D L + + V ++ + + + G G+GKS L W Sbjct: 3 QLIFDFAAHDYPSFDKFL-GTENAELVYVLRHK---HGQFIYVWGEEGAGKSHLLQAWVA 58 Query: 87 KS-----RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL-FHIINSIHQYDSSL 140 ++ + + L +T + + ++ ++ L + L F I N Sbjct: 59 QALEAGKNAAYIDAASMPLTDAAFET-EYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGF 117 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L+ + V DL +R+ V ++ D + M A RQ+ +D ++ Y Sbjct: 118 LLLGSEYTPQQLVIREDLRTRMAYCLVYEVKPLTDQEKIDALASMAAARQVTVDSEIFEY 177 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 +++ R + ++D +DN A++ G IT L ++LK+ + Sbjct: 178 LLKHWRRDMDSLMMMLDTLDNYAVTMGKRITLPLLRQLLKQQE 220 >gi|319776111|ref|YP_004138599.1| ATPase involved in DNA replication initiation [Haemophilus influenzae F3047] gi|317450702|emb|CBY86922.1| predicted ATPase involved in DNA replication initiation [Haemophilus influenzae F3047] Length = 231 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 43/190 (22%), Positives = 84/190 (44%), Gaps = 13/190 (6%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKS----RSTRFSNIAKS-----LDSILIDTRKPVLLE 114 + G GSGK+ L +S++ R+ + ++KS ++ ++ V L+ Sbjct: 41 QPFFYIWGNKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQYFSTAVLENLEQQELVCLD 100 Query: 115 DIDLLDFNDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKI 170 D+ + ND +F + N I +LL+ +A P + V LPDL SRL + ++ Sbjct: 101 DLQNVIGNDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQL 160 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 + D+ KV+ R + + A +++ R+ R + + +D +D +L + Sbjct: 161 NSLTDEQKIKVLQLAAYQRGFQLSDETANFLITRLARDMHTLFEALDLLDKASLQAQRNL 220 Query: 231 TRSLAAEVLK 240 T E+L Sbjct: 221 TIPFVKEILN 230 >gi|315288098|gb|EFU47498.1| DnaA regulatory inactivator Hda [Escherichia coli MS 110-3] Length = 230 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 37/229 (16%), Positives = 85/229 (37%), Gaps = 13/229 (5%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 QL + L + S + L G+G+S L + Sbjct: 1 PAQLSLPLYLPDDETFASFWPGDNSSLLAALQNVLRQEHSGYIYLWAREGAGRSHLLHAA 60 Query: 85 SD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHIINS 132 + + + + K + ++ V +++I+ + ++ +F + N Sbjct: 61 CAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCIDNIECIAGDELWEMAIFDLYNR 120 Query: 133 IHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 I + LL+T P + LPDL SRL + K+ D+ + + R Sbjct: 121 ILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLRGF 180 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + + ++++R++R + +D++D +++ +T E+LK Sbjct: 181 ELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 229 >gi|145634445|ref|ZP_01790155.1| DNA replication initiation factor [Haemophilus influenzae PittAA] gi|145268425|gb|EDK08419.1| DNA replication initiation factor [Haemophilus influenzae PittAA] Length = 231 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 42/190 (22%), Positives = 84/190 (44%), Gaps = 13/190 (6%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKS----RSTRFSNIAKS-----LDSILIDTRKPVLLE 114 + G GSGK+ L +S++ R+ + ++KS ++ ++ V L+ Sbjct: 41 QPFFYIWGDKGSGKTHLLRAFSNEYLIKQRTAIYVPLSKSQYFSTAVLENLEQQELVCLD 100 Query: 115 DIDLLDFNDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKI 170 D+ + ND +F + N I +LL+ +A P + V LPDL SRL + ++ Sbjct: 101 DLQSVIGNDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQL 160 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 + D+ +V+ R + + A +++ R+ R + + +D +D +L + Sbjct: 161 NSLTDEQKVEVLQHTAYQRGFQLSDETANFLITRLARDMHTLFEALDLLDKASLQAQRNL 220 Query: 231 TRSLAAEVLK 240 T E+L Sbjct: 221 TIPFVKEILN 230 >gi|15676960|ref|NP_274109.1| hypothetical protein NMB1076 [Neisseria meningitidis MC58] gi|254804954|ref|YP_003083175.1| DnaA related protein, truncated [Neisseria meningitidis alpha14] gi|304387630|ref|ZP_07369817.1| DnaA regulatory inactivator Hda [Neisseria meningitidis ATCC 13091] gi|7226316|gb|AAF41471.1| DnaA-related protein [Neisseria meningitidis MC58] gi|254668496|emb|CBA05833.1| DnaA related protein, truncated [Neisseria meningitidis alpha14] gi|261392600|emb|CAX50162.1| DnaA-homolog protein Hda [Neisseria meningitidis 8013] gi|304338355|gb|EFM04478.1| DnaA regulatory inactivator Hda [Neisseria meningitidis ATCC 13091] gi|308389233|gb|ADO31553.1| hypothetical protein NMBB_1213 [Neisseria meningitidis alpha710] gi|316984795|gb|EFV63753.1| dnaA regulatory inactivator Hda [Neisseria meningitidis H44/76] gi|325128199|gb|EGC51087.1| DnaA regulatory inactivator Hda [Neisseria meningitidis N1568] gi|325132068|gb|EGC54764.1| DnaA regulatory inactivator Hda [Neisseria meningitidis M6190] gi|325134243|gb|EGC56891.1| DnaA regulatory inactivator Hda [Neisseria meningitidis M13399] gi|325136375|gb|EGC58983.1| DnaA regulatory inactivator Hda [Neisseria meningitidis M0579] gi|325138001|gb|EGC60574.1| DnaA regulatory inactivator Hda [Neisseria meningitidis ES14902] gi|325140287|gb|EGC62811.1| DnaA regulatory inactivator Hda [Neisseria meningitidis CU385] gi|325142331|gb|EGC64743.1| DnaA regulatory inactivator Hda [Neisseria meningitidis 961-5945] gi|325144711|gb|EGC67008.1| DnaA regulatory inactivator Hda [Neisseria meningitidis M01-240013] gi|325198284|gb|ADY93740.1| DnaA regulatory inactivator Hda [Neisseria meningitidis G2136] gi|325200243|gb|ADY95698.1| DnaA regulatory inactivator Hda [Neisseria meningitidis H44/76] gi|325202167|gb|ADY97621.1| DnaA regulatory inactivator Hda [Neisseria meningitidis M01-240149] gi|325204119|gb|ADY99572.1| DnaA regulatory inactivator Hda [Neisseria meningitidis M01-240355] gi|325206100|gb|ADZ01553.1| DnaA regulatory inactivator Hda [Neisseria meningitidis M04-240196] gi|325208079|gb|ADZ03531.1| DnaA regulatory inactivator Hda [Neisseria meningitidis NZ-05/33] Length = 222 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 89/223 (39%), Gaps = 11/223 (4%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL F F S D L + + V ++ + + + G G+GKS L W Sbjct: 3 QLIFDFAAHDYPSFDKFL-GTENAELVYVLRHK---HGQFIYVWGEEGAGKSHLLQAWVA 58 Query: 87 KS-----RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL-FHIINSIHQYDSSL 140 ++ + + L + + + ++ ++ L + L F I N Sbjct: 59 QALEAGKNAAYIDAASMPLTDAAFEA-EYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGF 117 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L+ + V DL +R+ V ++ D + M A RQ+ +D ++ Y Sbjct: 118 LLLGSEYTPQQLVIREDLRTRMAYCLVYEVKPLTDQEKIDALASMAAARQVTVDSEIFEY 177 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 +++ R + ++D +DN A++ G IT L ++LK+ + Sbjct: 178 LLKHWRRDMDSLMMMLDTLDNYAVTMGKRITLPLLRQLLKQQE 220 >gi|21232217|ref|NP_638134.1| hypothetical protein XCC2786 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767654|ref|YP_242416.1| hypothetical protein XC_1327 [Xanthomonas campestris pv. campestris str. 8004] gi|21113975|gb|AAM42058.1| replication related protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572986|gb|AAY48396.1| replication related protein [Xanthomonas campestris pv. campestris str. 8004] Length = 233 Score = 159 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 55/231 (23%), Positives = 91/231 (39%), Gaps = 21/231 (9%) Query: 27 QLFFSFPRCLGISRDDLLVHS----AIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA- 81 QL + D + A QA W + L GPSG+GK+ LA Sbjct: 5 QLPLALRAPSDQRLDSYIAAPDGLIAQLQAFAA-GQLSDW----LYLAGPSGTGKTHLAL 59 Query: 82 NIWSDKSRSTR------FSNIAKSLDSIL--IDTRKPVLLEDIDLLDF---NDTQLFHII 130 ++ + ++ R A L L ++ R V L+ +D + ++ LF Sbjct: 60 SVCAAAEQAGRSSAYLPLQAAAGRLRDALEALEGRSLVALDGVDSIAGQCEDEVALFDFH 119 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N +LL TAR P + LPDL SRL + + + DD V+ R Sbjct: 120 NRARAAGITLLYTARQMPDGLALVLPDLRSRLSQCVRISLPVLDDVARAAVLRDRAQRRG 179 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + +D+ +++ ER L L+D++D +L+ +T VL + Sbjct: 180 LALDEAAIDWLLTHSERELAGLVALLDRLDRESLAAQRRVTVPFLRRVLGD 230 >gi|56412621|ref|YP_149696.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197361556|ref|YP_002141192.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|81599733|sp|Q5PL41|HDA_SALPA RecName: Full=DnaA-homolog protein hda gi|226740579|sp|B5BB08|HDA_SALPK RecName: Full=DnaA-homolog protein hda gi|56126878|gb|AAV76384.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093032|emb|CAR58469.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 241 Score = 159 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 37/232 (15%), Positives = 88/232 (37%), Gaps = 15/232 (6%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDS-WPSWPSRVVILVGPSGSGKSCLA 81 N QL + + + + S + L G+G+S L Sbjct: 10 NTPAQLSLPLYLPDDETFASFWPGD-NASLLAALQNVLRQEHSGYIYLWAREGAGRSHLL 68 Query: 82 NIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHI 129 + + + + + K + ++ V +++I+ + ++ +F + Sbjct: 69 HAACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCIDNIECVAGDELWEMAIFDL 128 Query: 130 INSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N I + LL+T P + LPDL SRL + K+ D+ + + Sbjct: 129 YNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARL 188 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 R + + + ++++R++R + +D++D+ +++ +T E+LK Sbjct: 189 RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDHASITAQRKLTIPFVKEILK 240 >gi|82703729|ref|YP_413295.1| hypothetical protein Nmul_A2616 [Nitrosospira multiformis ATCC 25196] gi|82411794|gb|ABB75903.1| regulatory inactivation of DnaA Hda protein [Nitrosospira multiformis ATCC 25196] Length = 224 Score = 159 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 77/186 (41%), Gaps = 7/186 (3%) Query: 64 SRVVILVGPSGSGKSCL----ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 R V + G +G GKS L A+ +T + + V+++D+D L Sbjct: 40 ERFVYIWGGTGCGKSHLLQGVASACKRNDMNTLYFACGERTSFANGSEADCVMVDDVDRL 99 Query: 120 DFN-DTQLFHIINSIHQYD-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 + LFH+ N I + LL++ P + DL +RL V ++ D+ Sbjct: 100 GADAQIGLFHLYNRIRDEGQAFLLVSGSVAPTQLKLR-ADLLTRLAWGLVYEVHELTDEE 158 Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237 + + + R + + +++ Y+++ R L ++ +D +L+ IT L E Sbjct: 159 KMEAMKSHASSRGLALPQEVCDYLLRHERRDLTSLMAKLNALDKYSLASHRKITVPLVRE 218 Query: 238 VLKETQ 243 +L+ Sbjct: 219 LLQAAS 224 >gi|229845047|ref|ZP_04465183.1| DNA replication initiation factor [Haemophilus influenzae 6P18H1] gi|229812019|gb|EEP47712.1| DNA replication initiation factor [Haemophilus influenzae 6P18H1] Length = 231 Score = 159 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 42/190 (22%), Positives = 84/190 (44%), Gaps = 13/190 (6%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKS----RSTRFSNIAKS-----LDSILIDTRKPVLLE 114 + G GSGK+ L +S++ R+ + ++KS ++ ++ V L+ Sbjct: 41 QPFFYIWGDKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQYFSTAVLENLEQQELVCLD 100 Query: 115 DIDLLDFNDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKI 170 D+ + ND +F + N I +LL+ +A P + V LPDL SRL + ++ Sbjct: 101 DLQSVIGNDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQL 160 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 + D+ +V+ R + + A +++ R+ R + + +D +D +L + Sbjct: 161 NSLTDEQKVEVLQHTAYQRGFQLSDETANFLITRLARDMHTLFEALDLLDKASLQAQRNL 220 Query: 231 TRSLAAEVLK 240 T E+L Sbjct: 221 TIPFVKEILN 230 >gi|22125308|ref|NP_668731.1| DNA replication initiation factor [Yersinia pestis KIM 10] gi|45442467|ref|NP_994006.1| DNA replication initiation factor [Yersinia pestis biovar Microtus str. 91001] gi|149365068|ref|ZP_01887103.1| hypothetical protein YPE_0204 [Yersinia pestis CA88-4125] gi|153949198|ref|YP_001400218.1| DNA replication initiation factor [Yersinia pseudotuberculosis IP 31758] gi|161760564|ref|YP_071299.2| DNA replication initiation factor [Yersinia pseudotuberculosis IP 32953] gi|162100168|ref|YP_652172.2| DNA replication initiation factor [Yersinia pestis Antiqua] gi|162139443|ref|YP_647243.2| DNA replication initiation factor [Yersinia pestis Nepal516] gi|162420351|ref|YP_001607487.1| DNA replication initiation factor [Yersinia pestis Angola] gi|165926912|ref|ZP_02222744.1| DnaA homolog protein Hda [Yersinia pestis biovar Orientalis str. F1991016] gi|165935965|ref|ZP_02224535.1| DnaA homolog protein Hda [Yersinia pestis biovar Orientalis str. IP275] gi|166011241|ref|ZP_02232139.1| DnaA homolog protein Hda [Yersinia pestis biovar Antiqua str. E1979001] gi|166212401|ref|ZP_02238436.1| DnaA homolog protein Hda [Yersinia pestis biovar Antiqua str. B42003004] gi|167398390|ref|ZP_02303914.1| DnaA homolog protein Hda [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422726|ref|ZP_02314479.1| DnaA homolog protein Hda [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424770|ref|ZP_02316523.1| DnaA homolog protein Hda [Yersinia pestis biovar Mediaevalis str. K1973002] gi|218930116|ref|YP_002347991.1| DNA replication initiation factor [Yersinia pestis CO92] gi|270489930|ref|ZP_06207004.1| DnaA regulatory inactivator Hda [Yersinia pestis KIM D27] gi|294504815|ref|YP_003568877.1| DNA replication initiation factor [Yersinia pestis Z176003] gi|57012735|sp|Q8ZCC1|HDA_YERPE RecName: Full=DnaA-homolog protein hda gi|167008789|sp|A7FG40|HDA_YERP3 RecName: Full=DnaA-homolog protein hda gi|226740583|sp|A9QZX0|HDA_YERPG RecName: Full=DnaA-homolog protein hda gi|21958185|gb|AAM84982.1|AE013744_5 putative DNA replication factor [Yersinia pestis KIM 10] gi|45437332|gb|AAS62883.1| ATPase involved in DNA replication initiation [Yersinia pestis biovar Microtus str. 91001] gi|115348727|emb|CAL21673.1| conserved hypothetical protein [Yersinia pestis CO92] gi|149291481|gb|EDM41555.1| hypothetical protein YPE_0204 [Yersinia pestis CA88-4125] gi|152960693|gb|ABS48154.1| DnaA-like protein [Yersinia pseudotuberculosis IP 31758] gi|162353166|gb|ABX87114.1| DnaA homolog protein Hda [Yersinia pestis Angola] gi|165916110|gb|EDR34717.1| DnaA homolog protein Hda [Yersinia pestis biovar Orientalis str. IP275] gi|165921263|gb|EDR38487.1| DnaA homolog protein Hda [Yersinia pestis biovar Orientalis str. F1991016] gi|165989919|gb|EDR42220.1| DnaA homolog protein Hda [Yersinia pestis biovar Antiqua str. E1979001] gi|166206332|gb|EDR50812.1| DnaA homolog protein Hda [Yersinia pestis biovar Antiqua str. B42003004] gi|166958317|gb|EDR55338.1| DnaA homolog protein Hda [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050894|gb|EDR62302.1| DnaA homolog protein Hda [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056652|gb|EDR66421.1| DnaA homolog protein Hda [Yersinia pestis biovar Mediaevalis str. K1973002] gi|262362878|gb|ACY59599.1| DNA replication initiation factor [Yersinia pestis D106004] gi|262366801|gb|ACY63358.1| DNA replication initiation factor [Yersinia pestis D182038] gi|270338434|gb|EFA49211.1| DnaA regulatory inactivator Hda [Yersinia pestis KIM D27] gi|294355274|gb|ADE65615.1| DNA replication initiation factor [Yersinia pestis Z176003] Length = 239 Score = 159 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 87/232 (37%), Gaps = 17/232 (7%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVH--SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80 N QL + ++ A++ P + G G+S L Sbjct: 8 NTPAQLSLPLYLPDDETFASFYPGENPSLLAAIQSAVHQPH--GSYIYFWSREGGGRSHL 65 Query: 81 ANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFH 128 + + + + + K I ++ V +++I+ + ++ +F+ Sbjct: 66 LHAACAELSQQGEAVGYVPLDKRAYFIPEVLEGMEQLALVCIDNIECIAGDEQWEMAMFN 125 Query: 129 IINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 + N I + LL+T P + LPDL SRL + K+ DD + + Sbjct: 126 LYNRIVETGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDDEKLQALQLRAK 185 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + + + ++++R++R + +D++D +++ +T E+L Sbjct: 186 LRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEIL 237 >gi|240080794|ref|ZP_04725337.1| hypothetical protein NgonF_05711 [Neisseria gonorrhoeae FA19] gi|240117888|ref|ZP_04731950.1| hypothetical protein NgonPID_05407 [Neisseria gonorrhoeae PID1] gi|268596912|ref|ZP_06131079.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268603592|ref|ZP_06137759.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268550700|gb|EEZ45719.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268587723|gb|EEZ52399.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] Length = 222 Score = 159 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 88/223 (39%), Gaps = 11/223 (4%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL F F S D L + + V ++ + + G G+GKS L W Sbjct: 3 QLIFDFAAHDYPSFDKFL-GTENAELVYVLQHKHD---PFIYVWGEEGAGKSHLLQAWVA 58 Query: 87 KS-----RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL-FHIINSIHQYDSSL 140 ++ + + L + + + ++ ++ L + L F I N Sbjct: 59 QALEAGKNAAYIDAASMPLTDAAFEA-EYLAVDQVEKLGNEEQALLFSIFNRFRNNGKGF 117 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L+ + V DL +R+ V ++ D + M A RQ+ +D ++ Y Sbjct: 118 LLLGSEYTPQQLVIREDLRTRMAYCLVYEVKPLTDPEKIDALANMAAARQVTVDSEIFEY 177 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 +++ R + ++D +DN A++ G IT L ++LK+ + Sbjct: 178 LLKHWRRDMDSLMMMLDTLDNYAVTMGKRITLPLLRQLLKQQE 220 >gi|161502351|ref|YP_001569463.1| DNA replication initiation factor [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|189042483|sp|A9MHP3|HDA_SALAR RecName: Full=DnaA-homolog protein hda gi|160863698|gb|ABX20321.1| hypothetical protein SARI_00384 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 241 Score = 159 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 37/232 (15%), Positives = 88/232 (37%), Gaps = 15/232 (6%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDS-WPSWPSRVVILVGPSGSGKSCLA 81 N QL + + + + S + L G+G+S L Sbjct: 10 NTPAQLSLPLYLPDDETFASFWPGD-NASLLAALQNVLRQEHSGYIYLWAREGAGRSHLL 68 Query: 82 NIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHI 129 + + + + + K + ++ V +++I+ + ++ +F + Sbjct: 69 HAACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCIDNIECVAGDELWEMAIFDL 128 Query: 130 INSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N I + LL+T P + LPDL SRL + K+ D+ + + Sbjct: 129 YNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARL 188 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 R + + + ++++R++R + +D++D+ +++ +T E+LK Sbjct: 189 RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDHASITAQRKLTIPFVKEILK 240 >gi|163752404|ref|ZP_02159597.1| DNA replication initiation factor [Shewanella benthica KT99] gi|161327701|gb|EDP98890.1| DNA replication initiation factor [Shewanella benthica KT99] Length = 236 Score = 159 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 41/234 (17%), Positives = 93/234 (39%), Gaps = 18/234 (7%) Query: 23 NKEEQLFFS--FPRCLGISRDDLLVHSAIEQAVRLIDS-WPSWPSRVVILVGPSGSGKSC 79 N QL P + + ++ ++ + + + V L GP SG++ Sbjct: 4 NSPLQLSLPVHLPDDETFNS--YYPAAGNDELIQSLQACAEGAAHQAVFLWGPVKSGRTH 61 Query: 80 LANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLF 127 L + + + S+ L ++ + ++D+D + + + +F Sbjct: 62 LMHAACAHANDLQRSSFYIPLGIHASISPALLEGLEQLDLICIDDVDAIAGHPLWEEAIF 121 Query: 128 HIINSIHQY-DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 + N + + SL+++A P G L DL SR++ ++ D+ + + Sbjct: 122 DLYNRVSENNQCSLIVSASVSPSDSGFVLADLVSRMQWGLNYQLQPMADEEKLVALQRRA 181 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 A R + ++ + +++ R+ R L ++DK+D +L +T E+LK Sbjct: 182 AMRGLQLEDDVGRFLLNRLARDLRTLFDVLDKLDKDSLVHQRKLTIPFVKEMLK 235 >gi|16761414|ref|NP_457031.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16765816|ref|NP_461431.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29140889|ref|NP_804231.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62181063|ref|YP_217480.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|167991801|ref|ZP_02572900.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168232045|ref|ZP_02657103.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168243269|ref|ZP_02668201.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261467|ref|ZP_02683440.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168466758|ref|ZP_02700612.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168817751|ref|ZP_02829751.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194446139|ref|YP_002041757.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194449619|ref|YP_002046559.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194472246|ref|ZP_03078230.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194735099|ref|YP_002115562.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197250088|ref|YP_002147449.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197263709|ref|ZP_03163783.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198242062|ref|YP_002216565.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200388824|ref|ZP_03215436.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204929434|ref|ZP_03220508.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205353601|ref|YP_002227402.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857909|ref|YP_002244560.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213160889|ref|ZP_03346599.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425351|ref|ZP_03358101.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213582544|ref|ZP_03364370.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213616332|ref|ZP_03372158.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213647175|ref|ZP_03377228.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213855522|ref|ZP_03383762.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224582970|ref|YP_002636768.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238913635|ref|ZP_04657472.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289829340|ref|ZP_06546952.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|57012732|sp|Q7CQ21|HDA_SALTY RecName: Full=DnaA-homolog protein hda gi|57012734|sp|Q8XEQ0|HDA_SALTI RecName: Full=DnaA-homolog protein hda gi|75481740|sp|Q57LL3|HDA_SALCH RecName: Full=DnaA-homolog protein hda gi|226740573|sp|B5F171|HDA_SALA4 RecName: Full=DnaA-homolog protein hda gi|226740574|sp|B5FQI8|HDA_SALDC RecName: Full=DnaA-homolog protein hda gi|226740575|sp|B5R558|HDA_SALEP RecName: Full=DnaA-homolog protein hda gi|226740576|sp|B5RCW8|HDA_SALG2 RecName: Full=DnaA-homolog protein hda gi|226740577|sp|B4TD71|HDA_SALHS RecName: Full=DnaA-homolog protein hda gi|226740578|sp|B4T0M5|HDA_SALNS RecName: Full=DnaA-homolog protein hda gi|226740580|sp|B4TR72|HDA_SALSV RecName: Full=DnaA-homolog protein hda gi|254800192|sp|C0PYR0|HDA_SALPC RecName: Full=DnaA-homolog protein hda gi|269969427|sp|A9N2Y3|HDA_SALPB RecName: Full=DnaA-homolog protein hda gi|25356046|pir||AF0818 conserved hypothetical protein STY2737 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16421038|gb|AAL21390.1| putative ATPase involved in DNA replication initiation [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16503714|emb|CAD02698.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29136514|gb|AAO68080.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62128696|gb|AAX66399.1| putative ATPase involved in DNA replication initiation [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194404802|gb|ACF65024.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407923|gb|ACF68142.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194458610|gb|EDX47449.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194710601|gb|ACF89822.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195630731|gb|EDX49323.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197213791|gb|ACH51188.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197241964|gb|EDY24584.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197936578|gb|ACH73911.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605922|gb|EDZ04467.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204321153|gb|EDZ06353.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205273382|emb|CAR38354.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205329842|gb|EDZ16606.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205333601|gb|EDZ20365.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205337580|gb|EDZ24344.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205344978|gb|EDZ31742.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349619|gb|EDZ36250.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709712|emb|CAR34062.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224467497|gb|ACN45327.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261247694|emb|CBG25521.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994607|gb|ACY89492.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159048|emb|CBW18561.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913484|dbj|BAJ37458.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320086990|emb|CBY96760.1| Chromosomal replication initiator protein dnaA [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322613765|gb|EFY10704.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619492|gb|EFY16368.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624997|gb|EFY21826.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629560|gb|EFY26336.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634010|gb|EFY30747.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635552|gb|EFY32263.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639900|gb|EFY36576.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644394|gb|EFY40935.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649152|gb|EFY45592.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655242|gb|EFY51551.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658289|gb|EFY54555.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664289|gb|EFY60486.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669457|gb|EFY65606.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673184|gb|EFY69290.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676575|gb|EFY72643.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683326|gb|EFY79340.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685788|gb|EFY81781.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322715546|gb|EFZ07117.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323130826|gb|ADX18256.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323192535|gb|EFZ77764.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199580|gb|EFZ84671.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204644|gb|EFZ89642.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208092|gb|EFZ93037.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210185|gb|EFZ95086.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217051|gb|EGA01773.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220610|gb|EGA05059.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225470|gb|EGA09701.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229260|gb|EGA13384.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235425|gb|EGA19509.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237389|gb|EGA21452.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245144|gb|EGA29145.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248847|gb|EGA32773.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253134|gb|EGA36966.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258704|gb|EGA42365.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260609|gb|EGA44219.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266385|gb|EGA49873.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269784|gb|EGA53234.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326624320|gb|EGE30665.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628698|gb|EGE35041.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332989424|gb|AEF08407.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 241 Score = 159 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 37/232 (15%), Positives = 88/232 (37%), Gaps = 15/232 (6%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDS-WPSWPSRVVILVGPSGSGKSCLA 81 N QL + + + + S + L G+G+S L Sbjct: 10 NTPAQLSLPLYLPDDETFASFWPGD-NASLLAALQNVLRQEHSGYIYLWAREGAGRSHLL 68 Query: 82 NIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHI 129 + + + + + K + ++ V +++I+ + ++ +F + Sbjct: 69 HAACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCIDNIECVAGDELWEMAIFDL 128 Query: 130 INSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N I + LL+T P + LPDL SRL + K+ D+ + + Sbjct: 129 YNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARL 188 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 R + + + ++++R++R + +D++D+ +++ +T E+LK Sbjct: 189 RGFELPEDVGRFLLKRLDREMRTLFMTLDQLDHASITAQRKLTIPFVKEILK 240 >gi|229846871|ref|ZP_04466978.1| DNA replication initiation factor [Haemophilus influenzae 7P49H1] gi|229810360|gb|EEP46079.1| DNA replication initiation factor [Haemophilus influenzae 7P49H1] Length = 231 Score = 159 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 44/190 (23%), Positives = 84/190 (44%), Gaps = 13/190 (6%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKS----RSTRFSNIAKS-----LDSILIDTRKPVLLE 114 + G GSGK+ L +S++ R+ + ++KS ++ ++ V L+ Sbjct: 41 QPFFYIWGDKGSGKTHLLRAFSNEYLIKQRTAIYVPLSKSQYFSTAVLENLEQQELVCLD 100 Query: 115 DIDLLDFNDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKI 170 D+ + ND +F + N I +LL+ +A P + V LPDL SRL + ++ Sbjct: 101 DLQSVIGNDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQL 160 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 + D+ KV+ R + + A +++ R+ R + K +D +D +L + Sbjct: 161 NSLTDEQKIKVLQLAAYQRGFQLSDETANFLITRLARDMHTLFKALDLLDKASLQAQRNL 220 Query: 231 TRSLAAEVLK 240 T E+L Sbjct: 221 TIPFVKEILN 230 >gi|145599449|ref|YP_001163525.1| DNA replication initiation factor [Yersinia pestis Pestoides F] gi|170023596|ref|YP_001720101.1| DNA replication initiation factor [Yersinia pseudotuberculosis YPIII] gi|186896199|ref|YP_001873311.1| DNA replication initiation factor [Yersinia pseudotuberculosis PB1/+] gi|229838671|ref|ZP_04458830.1| ATPase regulatory factor involved in DnaA inactivation [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895735|ref|ZP_04510906.1| ATPase regulatory factor involved in DnaA inactivation [Yersinia pestis Pestoides A] gi|229899237|ref|ZP_04514380.1| ATPase regulatory factor involved in DnaA inactivation [Yersinia pestis biovar Orientalis str. India 195] gi|229901737|ref|ZP_04516859.1| ATPase regulatory factor involved in DnaA inactivation [Yersinia pestis Nepal516] gi|57012730|sp|Q668E8|HDA_YERPS RecName: Full=DnaA-homolog protein hda gi|122980224|sp|Q1CK37|HDA_YERPN RecName: Full=DnaA-homolog protein hda gi|123245695|sp|Q1C5P5|HDA_YERPA RecName: Full=DnaA-homolog protein hda gi|167008790|sp|A4TMP0|HDA_YERPP RecName: Full=DnaA-homolog protein hda gi|226740582|sp|B2K9J7|HDA_YERPB RecName: Full=DnaA-homolog protein hda gi|226740584|sp|B1JSF7|HDA_YERPY RecName: Full=DnaA-homolog protein hda gi|51590390|emb|CAH22030.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP 32953] gi|108775124|gb|ABG17643.1| regulatory inactivation of DnaA Hda protein [Yersinia pestis Nepal516] gi|108780169|gb|ABG14227.1| regulatory inactivation of DnaA Hda protein [Yersinia pestis Antiqua] gi|145211145|gb|ABP40552.1| regulatory inactivation of DnaA Hda protein [Yersinia pestis Pestoides F] gi|169750130|gb|ACA67648.1| DnaA regulatory inactivator Hda [Yersinia pseudotuberculosis YPIII] gi|186699225|gb|ACC89854.1| DnaA regulatory inactivator Hda [Yersinia pseudotuberculosis PB1/+] gi|229681666|gb|EEO77760.1| ATPase regulatory factor involved in DnaA inactivation [Yersinia pestis Nepal516] gi|229687639|gb|EEO79712.1| ATPase regulatory factor involved in DnaA inactivation [Yersinia pestis biovar Orientalis str. India 195] gi|229695037|gb|EEO85084.1| ATPase regulatory factor involved in DnaA inactivation [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701541|gb|EEO89569.1| ATPase regulatory factor involved in DnaA inactivation [Yersinia pestis Pestoides A] gi|320014366|gb|ADV97937.1| ATPase regulatory factor involved in DnaA inactivation [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 235 Score = 159 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 87/232 (37%), Gaps = 17/232 (7%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVH--SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80 N QL + ++ A++ P + G G+S L Sbjct: 4 NTPAQLSLPLYLPDDETFASFYPGENPSLLAAIQSAVHQPH--GSYIYFWSREGGGRSHL 61 Query: 81 ANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFH 128 + + + + + K I ++ V +++I+ + ++ +F+ Sbjct: 62 LHAACAELSQQGEAVGYVPLDKRAYFIPEVLEGMEQLALVCIDNIECIAGDEQWEMAMFN 121 Query: 129 IINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 + N I + LL+T P + LPDL SRL + K+ DD + + Sbjct: 122 LYNRIVETGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDDEKLQALQLRAK 181 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + + + ++++R++R + +D++D +++ +T E+L Sbjct: 182 LRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEIL 233 >gi|260582654|ref|ZP_05850443.1| DnaA regulatory inactivator Hda [Haemophilus influenzae NT127] gi|260094326|gb|EEW78225.1| DnaA regulatory inactivator Hda [Haemophilus influenzae NT127] Length = 231 Score = 159 bits (404), Expect = 3e-37, Method: Composition-based stats. Identities = 43/190 (22%), Positives = 84/190 (44%), Gaps = 13/190 (6%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKS----RSTRFSNIAKS-----LDSILIDTRKPVLLE 114 + G GSGK+ L +S++ R+ + ++KS ++ ++ V L+ Sbjct: 41 QPFFYIWGNKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQYFSTAVLENLEQQELVCLD 100 Query: 115 DIDLLDFNDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKI 170 D+ + ND +F + N I +LL+ +A P + V LPDL SRL + ++ Sbjct: 101 DLQSVIGNDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQL 160 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 + D+ KV+ R + + A +++ R+ R + + +D +D +L + Sbjct: 161 NSLTDEQKIKVLQLAAYQRGFQLSDETANFLITRLARDMHTLFEALDLLDKASLQAQRNL 220 Query: 231 TRSLAAEVLK 240 T E+L Sbjct: 221 TIPFVKEILN 230 >gi|145629279|ref|ZP_01785078.1| hypothetical protein CGSHi22121_10765 [Haemophilus influenzae 22.1-21] gi|145639207|ref|ZP_01794814.1| hypothetical protein CGSHiII_04194 [Haemophilus influenzae PittII] gi|144978782|gb|EDJ88505.1| hypothetical protein CGSHi22121_10765 [Haemophilus influenzae 22.1-21] gi|145271769|gb|EDK11679.1| hypothetical protein CGSHiII_04194 [Haemophilus influenzae PittII] gi|309750783|gb|ADO80767.1| DNA replication initiation factor Had [Haemophilus influenzae R2866] Length = 231 Score = 159 bits (404), Expect = 3e-37, Method: Composition-based stats. Identities = 43/190 (22%), Positives = 84/190 (44%), Gaps = 13/190 (6%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKS----RSTRFSNIAKS-----LDSILIDTRKPVLLE 114 + G GSGK+ L +S++ R+ + ++KS ++ ++ V L+ Sbjct: 41 QPFFYIWGDKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQYFSTAVLENLEQQELVCLD 100 Query: 115 DIDLLDFNDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKI 170 D+ + ND +F + N I +LL+ +A P + V LPDL SRL + ++ Sbjct: 101 DLQSVIGNDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQL 160 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 + D+ KV+ R + + A +++ R+ R + + +D +D +L + Sbjct: 161 NSLTDEQKIKVLQLAAYQRGFQLSDETANFLITRLARDMHTLFEALDLLDKASLQAQRNL 220 Query: 231 TRSLAAEVLK 240 T E+L Sbjct: 221 TIPFVKEILN 230 >gi|329123275|ref|ZP_08251843.1| DnaA regulatory inactivator Hda [Haemophilus aegyptius ATCC 11116] gi|327471484|gb|EGF16932.1| DnaA regulatory inactivator Hda [Haemophilus aegyptius ATCC 11116] Length = 236 Score = 159 bits (404), Expect = 3e-37, Method: Composition-based stats. Identities = 43/190 (22%), Positives = 84/190 (44%), Gaps = 13/190 (6%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKS----RSTRFSNIAKS-----LDSILIDTRKPVLLE 114 + G GSGK+ L +S++ R+ + ++KS ++ ++ V L+ Sbjct: 46 QPFFYIWGNKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQYFSTAVLENLEQQELVCLD 105 Query: 115 DIDLLDFNDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKI 170 D+ + ND +F + N I +LL+ +A P + V LPDL SRL + ++ Sbjct: 106 DLQNVIGNDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQL 165 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 + D+ KV+ R + + A +++ R+ R + + +D +D +L + Sbjct: 166 NSLTDEQKIKVLQLAAYQRGFQLSDETANFLITRLARDMHTLFEALDLLDKASLQAQRNL 225 Query: 231 TRSLAAEVLK 240 T E+L Sbjct: 226 TIPFVKEILN 235 >gi|319896920|ref|YP_004135115.1| atpase regulatory factor involved in dnaa inactivation [Haemophilus influenzae F3031] gi|317432424|emb|CBY80779.1| ATPase regulatory factor involved in DnaA inactivation [Haemophilus influenzae F3031] Length = 231 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 43/190 (22%), Positives = 83/190 (43%), Gaps = 13/190 (6%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKS----RSTRFSNIAKS-----LDSILIDTRKPVLLE 114 + G GSGK+ L +S++ R+ + ++KS ++ + V L+ Sbjct: 41 QPFFYIWGNKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQYFSTAVLENLEQQALVCLD 100 Query: 115 DIDLLDFNDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKI 170 D+ + ND +F + N I +LL+ +A P + V LPDL SRL + ++ Sbjct: 101 DLQSVIGNDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQL 160 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 + D+ KV+ R + + A +++ R+ R + + +D +D +L + Sbjct: 161 NSLTDEQKIKVLQLAAYQRGFQLSDETANFLITRLARDMHTLFEALDLLDKASLQAQRNL 220 Query: 231 TRSLAAEVLK 240 T E+L Sbjct: 221 TIPFVKEILN 230 >gi|152971350|ref|YP_001336459.1| DNA replication initiation factor [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206580464|ref|YP_002237176.1| DnaA regulatory inactivator Hda [Klebsiella pneumoniae 342] gi|238895946|ref|YP_002920682.1| DNA replication initiation factor [Klebsiella pneumoniae NTUH-K2044] gi|262042106|ref|ZP_06015281.1| DnaA regulatory inactivator Hda [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288934116|ref|YP_003438175.1| DnaA regulatory inactivator Hda [Klebsiella variicola At-22] gi|290508321|ref|ZP_06547692.1| DnaA regulatory inactivator Hda [Klebsiella sp. 1_1_55] gi|269969359|sp|B5XNQ6|HDA_KLEP3 RecName: Full=DnaA-homolog protein hda gi|269969360|sp|A6TCA8|HDA_KLEP7 RecName: Full=DnaA-homolog protein hda gi|150956199|gb|ABR78229.1| DNA replication initiation factor [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206569522|gb|ACI11298.1| DnaA regulatory inactivator Hda [Klebsiella pneumoniae 342] gi|238548264|dbj|BAH64615.1| DNA replication initiation factor [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259040536|gb|EEW41632.1| DnaA regulatory inactivator Hda [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288888845|gb|ADC57163.1| DnaA regulatory inactivator Hda [Klebsiella variicola At-22] gi|289777715|gb|EFD85712.1| DnaA regulatory inactivator Hda [Klebsiella sp. 1_1_55] Length = 225 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 33/190 (17%), Positives = 82/190 (43%), Gaps = 13/190 (6%) Query: 64 SRVVILVGPSGSGKSCLANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLE 114 S + + G+G+S L + + + + + K + ++ V ++ Sbjct: 35 SGYIYIWSREGAGRSHLLHAACAELSQRGDAVGYVPLDKRTWFVPEVLEGMEQLALVCID 94 Query: 115 DIDLLDFNDT---QLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 +I+ + ++ +F++ N I + LL+T P + LPDL SRL + K+ Sbjct: 95 NIECVAGDEPWEMAIFNLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKL 154 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 D+ + + R + + + ++++R++R + +D++D+ +++ + Sbjct: 155 QPLSDEDKLQALQLRARLRGFEMPEDVCRFLLKRLDREMRSLFMTLDQLDHASITAQRKL 214 Query: 231 TRSLAAEVLK 240 T E+LK Sbjct: 215 TIPFVKEILK 224 >gi|88859787|ref|ZP_01134427.1| putative regulatory factor involved in inactivation of DnaA [Pseudoalteromonas tunicata D2] gi|88818804|gb|EAR28619.1| putative regulatory factor involved in inactivation of DnaA [Pseudoalteromonas tunicata D2] Length = 236 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 48/236 (20%), Positives = 100/236 (42%), Gaps = 22/236 (9%) Query: 23 NKEEQLFFS--FPRCLGI----SRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSG 76 ++ Q+ + P ++ LV S ++ + + + + L G + SG Sbjct: 4 HEPMQMALAVTLPDDETFTSYFGGENSLVVSHLKNSFEQMKTD----FQFTYLCGLADSG 59 Query: 77 KSCLANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DT 124 KS L ++ S I S+ I+ +++ V ++D+ L+ + + Sbjct: 60 KSHLLYATCVYAQERGLSTILLSMKEIIGLEPSMLDGLESLSVVCIDDLHLIAGHPNWER 119 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 +F+ N ++ D LL+ + P + LPDL SRLK T +I DD + +VK Sbjct: 120 AMFNFYNRFNEPDKLLLVASDLLPDMITIQLPDLESRLKWGTTFQIRSMSDDDKAEALVK 179 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 R + + + A +++ R+ R + ++DK+D+ ++ + +T L Sbjct: 180 RAKMRGLELSIECARFLLTRLSRDMRALLDVLDKLDHASMVQQRKLTIPFIKVTLN 235 >gi|330830282|ref|YP_004393234.1| DnaA-like protein hda [Aeromonas veronii B565] gi|328805418|gb|AEB50617.1| DnaA-like protein hda [Aeromonas veronii B565] Length = 233 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 43/237 (18%), Positives = 88/237 (37%), Gaps = 25/237 (10%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVH--SAIEQAVRLIDSWPSWP----SRVVILVGPSGSG 76 + QL + + + D+ V LI + + S + G GSG Sbjct: 2 KQPAQLSLA----VQLPDDETFVSFYPGNNA--HLITALKNAAIGQGSPFLYFWGAKGSG 55 Query: 77 KSCLANIWSDKSRSTRFSNIAKSLDSI---------LIDTRKPVLLEDIDLLDFN---DT 124 +S L + + + + SLD +++ V L+ ++ + N + Sbjct: 56 RSHLLHATCAEVNARDAAAAYLSLDQFEQLDPSMLDALESLPLVCLDSLEAIAGNAVWER 115 Query: 125 QLFHIINSIHQYD-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 LF N + +L++T + P G+ LPDL SRL + DD+ + Sbjct: 116 ALFDFYNRWQEKGEGTLVVTGCSAPRKLGLQLPDLASRLDWGVSFHLEELDDEGKLSALQ 175 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 R + + +++ R+ R + ++++DN + +T E+L+ Sbjct: 176 LRAELRGFKLPIDVGRFLLNRLSRDMRTLLTTLNQLDNASFRAKRKLTIPFVKEILE 232 >gi|284008472|emb|CBA74956.1| DnaA-homolog protein [Arsenophonus nasoniae] Length = 236 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 92/233 (39%), Gaps = 16/233 (6%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPS-WPSRVVILVGP-SGSGKSCL 80 N QL + + + I S + + S + GSGKS L Sbjct: 4 NTPSQLSLPLSTPDDETFASFITGE-NGILLAAIKSAINQFHSSYIYFWSQQEGSGKSHL 62 Query: 81 ANIWS----DKSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFH 128 + K + + + K + ++ V ++++ + ++ LF+ Sbjct: 63 LHAACTELSQKGEAVGYVPLDKRSYFVPDVLDGMEHLALVCIDNVHCIADDEEWEIALFN 122 Query: 129 IINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 + N I + S LL+T P + LPDL SRL + K+ D+ + + Sbjct: 123 LYNRILENGKSCLLITGDKPPRLIDLTLPDLASRLDWGQIYKLHPLSDEDKIQALQLRAK 182 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 R + ++++ ++++R++R ++D++D+ ++ +T ++LK Sbjct: 183 LRGFELSEEVSRFVLKRLDRKTRTLFTMLDELDHASIVAQRKLTIPFVKDILK 235 >gi|301169967|emb|CBW29571.1| ATPase regulatory factor involved in DnaA inactivation [Haemophilus influenzae 10810] Length = 231 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 42/190 (22%), Positives = 84/190 (44%), Gaps = 13/190 (6%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKS----RSTRFSNIAKS-----LDSILIDTRKPVLLE 114 + G GSGK+ L +S++ R+ + ++KS ++ ++ V L+ Sbjct: 41 QPFFYIWGNKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQYFSTAVLENLEQQELVCLD 100 Query: 115 DIDLLDFNDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKI 170 D+ + ND +F + N I +LL+ +A P + V LPDL SRL + ++ Sbjct: 101 DLQSVIGNDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQL 160 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 + D+ KV+ R + + A +++ R+ R + + +D +D +L + Sbjct: 161 NSLTDEQKIKVLQLAAYQRGFQLSDETANFLITRLARDMHTLFEALDLLDKASLQAQRNL 220 Query: 231 TRSLAAEVLK 240 T ++L Sbjct: 221 TIPFVKKILN 230 >gi|332288487|ref|YP_004419339.1| DNA replication initiation factor [Gallibacterium anatis UMN179] gi|330431383|gb|AEC16442.1| DNA replication initiation factor [Gallibacterium anatis UMN179] Length = 253 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 90/230 (39%), Gaps = 17/230 (7%) Query: 27 QLFFSFPRCLGISRDDL--LVHSAIEQAVR-LIDSWPSWPSRVVILVGPSGSGKSCLANI 83 Q + P + + + L ++ + G SGK+ + Sbjct: 24 QYQYILPIYE-FDPETFDNFDSDSNQLLCNSLFKNFAHLQQNFFYIWGAKSSGKTHVLKA 82 Query: 84 ----WSDKSRSTRFSNIAKS-----LDSILIDTRKPVLLEDIDLLDFNDT---QLFHIIN 131 + + RS + + K+ ++ V L+D+ + ND +F + N Sbjct: 83 ANNLFLQQERSAIYIPLTKTHYFSPEILEELEELDLVCLDDLGAIAGNDEWEVAIFDLFN 142 Query: 132 SIHQYDSSLL-MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 I + +LL M+A P + LPDL SRL +++ DD V+ + + Sbjct: 143 RIKETGKTLLLMSADQPPQQLPIKLPDLRSRLSWGETYQLAELSDDKKAAVLQQAARKQG 202 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + ++A +++ R++R L + +++K+D +L +T E L Sbjct: 203 LELPDEVAKFLLNRLDRDLTYLFSVLEKLDKASLQAQRKLTIPFVKEQLH 252 >gi|315634909|ref|ZP_07890191.1| DnaA regulatory inactivator Hda [Aggregatibacter segnis ATCC 33393] gi|315476461|gb|EFU67211.1| DnaA regulatory inactivator Hda [Aggregatibacter segnis ATCC 33393] Length = 234 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 41/189 (21%), Positives = 77/189 (40%), Gaps = 13/189 (6%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI---------LIDTRKPVLLE 114 L G GKS L + + + L+ ++ ++ V L+ Sbjct: 44 QPFFYLWGQRSCGKSHLLKAICHHYLTHQRPALYVPLNKAQYFSPAVLENLEQQELVCLD 103 Query: 115 DIDLLDFN---DTQLFHIINSIHQYDSSLL-MTARTFPVSWGVCLPDLCSRLKAATVVKI 170 D+ + N + +F +IN I + +LL ++A P + LPDL SRL V ++ Sbjct: 104 DLQEVIGNPDWELAIFDLINRIRETGKTLLVISADQSPTNLSAHLPDLASRLTWGEVYQL 163 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 +D V+ R I + + A ++ +R+ER + ++K+D +L + Sbjct: 164 MPLNDQQKITVLQLAAHQRGIELPDETANFLFKRLERDMKTLFNALEKLDQASLQAQRKL 223 Query: 231 TRSLAAEVL 239 T E+L Sbjct: 224 TIPFVKEIL 232 >gi|15601882|ref|NP_244954.1| DNA replication initiation factor [Pasteurella multocida subsp. multocida str. Pm70] gi|12720218|gb|AAK02101.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 254 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 43/190 (22%), Positives = 86/190 (45%), Gaps = 13/190 (6%) Query: 64 SRVVILVGPSGSGKSCLA----NIWSDKSRSTRFSNIAKS-----LDSILIDTRKPVLLE 114 + + G SGKS L + + R + + KS ++ ++ V L+ Sbjct: 64 QQFFYIWGEQSSGKSHLLKGITHHFFLLQRPAIYVPLEKSQYFSPAVLENLEQQQLVCLD 123 Query: 115 DIDLLDFN---DTQLFHIINSIHQYDSSLL-MTARTFPVSWGVCLPDLCSRLKAATVVKI 170 ++ + N + +F + N I +++LL ++A P + V LPDL SRL+ ++ Sbjct: 124 NLQAIIGNTEWELAIFDLFNRIKSVENTLLVISANQSPTALPVSLPDLASRLRWGESYQL 183 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 +D V+ K R I + ++A ++++R+ER + + + K+D +L + Sbjct: 184 VPLNDQQKIHVLQKNAHQRGIELPDEVANFLLKRLERDMKTLFEALSKLDKASLQAQRKL 243 Query: 231 TRSLAAEVLK 240 T E+LK Sbjct: 244 TIPFVKEILK 253 >gi|188990770|ref|YP_001902780.1| hypothetical protein xccb100_1374 [Xanthomonas campestris pv. campestris str. B100] gi|167732530|emb|CAP50724.1| replication related protein [Xanthomonas campestris pv. campestris] Length = 233 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 55/231 (23%), Positives = 91/231 (39%), Gaps = 21/231 (9%) Query: 27 QLFFSFPRCLGISRDDLLVHS----AIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA- 81 QL + D + A QA W + L GPSG+GK+ LA Sbjct: 5 QLPLALRAPSDQRLDSYIAAPDGLIAQLQAFAA-GQLSDW----LYLAGPSGTGKTHLAL 59 Query: 82 NIWSDKSRSTR------FSNIAKSLDSIL--IDTRKPVLLEDIDLLDF---NDTQLFHII 130 ++ + ++ R A L L ++ R V L+ +D + ++ LF Sbjct: 60 SVCAAAEQAGRSSAYLPLQAAAGRLRDALEALEGRSVVALDGVDSIAGQREDEVALFDFH 119 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N +LL TAR P + LPDL SRL + + + DD V+ R Sbjct: 120 NRARAAGITLLYTARQMPDGLALVLPDLRSRLSQCVRISLPVLDDVARAAVLRDRAQRRG 179 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + +D+ +++ ER L L+D++D +L+ +T VL + Sbjct: 180 LALDEAAIDWLLTHSERELAGLVALLDRLDRESLAAQRRVTVPFLRRVLGD 230 >gi|294140661|ref|YP_003556639.1| hypothetical protein SVI_1890 [Shewanella violacea DSS12] gi|293327130|dbj|BAJ01861.1| conserved hypothetical protein [Shewanella violacea DSS12] Length = 236 Score = 159 bits (402), Expect = 5e-37, Method: Composition-based stats. Identities = 43/237 (18%), Positives = 91/237 (38%), Gaps = 24/237 (10%) Query: 23 NKEEQLFFS--FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSR----VVILVGPSGSG 76 N QL P + + + LI S + V L GP SG Sbjct: 4 NSPLQLSLPVHLPDDETFNS--YYPAAGND---ELIQSLQACAEGQVHQAVFLWGPVKSG 58 Query: 77 KSCLANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DT 124 ++ L + + + S+ L ++ + ++D+D + + + Sbjct: 59 RTHLMHAACAHANDYQRSSFYLPLGIHASISPALLEGLEQLDLICIDDVDAIAGHPLWEE 118 Query: 125 QLFHIINSIHQY-DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 +F + N + + D SL+++ P G L DL SR++ ++ D+ + Sbjct: 119 AIFDLYNRVSENNDCSLIVSGSVSPTDSGFGLADLVSRMQWGLNYQLQPMADEEKLAALQ 178 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + A R + ++ + +++ R+ R L ++DK+D +L +T ++LK Sbjct: 179 RRAAMRGLQLEDDVGRFLLSRLARDLRTLFDVLDKLDKDSLVHQRKLTIPFVKKMLK 235 >gi|331005288|ref|ZP_08328678.1| Chromosomal replication initiator protein DnaA [gamma proteobacterium IMCC1989] gi|330420898|gb|EGG95174.1| Chromosomal replication initiator protein DnaA [gamma proteobacterium IMCC1989] Length = 226 Score = 158 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 85/225 (37%), Gaps = 12/225 (5%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 +QL P + ++L + + + + S+ R L G GSG S + Sbjct: 3 KQLPLPMPLSAEATFENLYISESSALTISALKSFIQQDERFFYLWG-EGSGVSHVLQAIQ 61 Query: 86 DKSRSTRF--------SNIAKSLDSILIDTRKPVLLEDIDLLDF---NDTQLFHIINSIH 134 + + +DT V+L+D+ + + +FH+ N + Sbjct: 62 HDNPQLNIVYFPLRDMIQYPAADVLAGLDTIDVVILDDVQCICGVTEWELAVFHLYNRLR 121 Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194 L++ ++ P G+ L DL SRL+ + D+ KV++ + + I Sbjct: 122 DGQKQLVIGSQIAPRELGISLADLHSRLQWGMSYSLEALSDEDKRKVLILRSQNLGLRIS 181 Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + +I R L L+ K+D+ +LS IT +VL Sbjct: 182 DDVIQFIFNHYSRDLRQLMTLLHKIDSASLSEQRHITIPFVKQVL 226 >gi|187922752|ref|YP_001894394.1| DnaA regulatory inactivator Hda [Burkholderia phytofirmans PsJN] gi|187713946|gb|ACD15170.1| DnaA regulatory inactivator Hda [Burkholderia phytofirmans PsJN] Length = 256 Score = 158 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 86/231 (37%), Gaps = 11/231 (4%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW------PSRVVILVGPSGSGKSC 79 QL + D+ A + V + + R L G SGSG++ Sbjct: 3 RQLTLDLGTPPPSTFDNFFAG-ANAELVTRLRELENALAAGPVADRTFYLWGESGSGRTH 61 Query: 80 LANIWSDKS--RSTRFSNIAKSLDSILIDTRKPV-LLEDIDLL-DFNDTQLFHIINSIHQ 135 L ++ RF+ SL + D R + ++D D L +F++ N + Sbjct: 62 LLQALVHEASPGHARFAGPQSSLAAFSFDPRVALYAIDDCDALSAAQQIAVFNLFNEVRA 121 Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195 + +S L+ A P DL +RL V ++ D+ V+ +R I + Sbjct: 122 HPTSALVAAGNAPPIGMTVREDLRTRLGWGLVFHLAPLPDEGKAAVLKHAARERGIMLAD 181 Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + AY++ R + L+D +D +L + +T L +L + Sbjct: 182 DVPAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRTMLASPDAEE 232 >gi|145298510|ref|YP_001141351.1| DnaA-like protein Hda [Aeromonas salmonicida subsp. salmonicida A449] gi|142851282|gb|ABO89603.1| DnaA-like protein hda [Aeromonas salmonicida subsp. salmonicida A449] Length = 233 Score = 158 bits (401), Expect = 6e-37, Method: Composition-based stats. Identities = 43/237 (18%), Positives = 88/237 (37%), Gaps = 25/237 (10%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVH--SAIEQAVRLIDSWPSWP----SRVVILVGPSGSG 76 + QL + + + D+ V LI + + S + G GSG Sbjct: 2 KQPAQLSLA----VQLPDDETFVSFYPGNNA--HLITALKNAAIGQGSPFLYFWGAKGSG 55 Query: 77 KSCLANIWSDKSRSTRFSNIAKSLDSI---------LIDTRKPVLLEDIDLLDFN---DT 124 +S L + + + + SLD +++ V L+ ++ + N + Sbjct: 56 RSHLLHATCAEVNARDAAAAYLSLDQFEQLDPSMLDALESLPLVCLDSLEAIAGNAQWER 115 Query: 125 QLFHIINSIHQYD-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 LF N + +L++T + P G+ LPDL SRL + DD+ + Sbjct: 116 ALFDFYNRWQEKGEGTLVVTGCSAPRKLGLQLPDLASRLDWGVSFHLDELDDEGKLSALQ 175 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 R + + +++ R+ R + ++++DN + +T E+L+ Sbjct: 176 LRAELRGFKLPIDVGRFLLNRLSRDMRTLLTTLNQLDNASFRAKRKLTIPFVKEILE 232 >gi|117619407|ref|YP_857322.1| chromosomal replication initiator protein DnaA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560814|gb|ABK37762.1| chromosomal replication initiator protein DnaA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 265 Score = 158 bits (401), Expect = 6e-37, Method: Composition-based stats. Identities = 44/241 (18%), Positives = 89/241 (36%), Gaps = 25/241 (10%) Query: 19 DQPKNKEEQLFFSFPRCLGISRDDLLVH--SAIEQAVRLIDSWPSWP----SRVVILVGP 72 Q + QL + + + D+ V LI + + S + G Sbjct: 30 AQRVKQPAQLSLA----VQLPDDETFVSFYPGNNA--HLITALKNAAIGQGSPFLYFWGA 83 Query: 73 SGSGKSCLANIWSDKSRSTRFSNIAKSLDSI---------LIDTRKPVLLEDIDLLDFN- 122 GSG+S L + + + + SLD +++ V L+ ++ + N Sbjct: 84 KGSGRSHLLHATCAEVNARDAAAAYLSLDQFEQLDPSMLDALESLPLVCLDSLEAIAGNA 143 Query: 123 --DTQLFHIINSIHQYD-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179 + LF N + +L++T + P G+ LPDL SRL + DD+ Sbjct: 144 LWERALFDFYNRWQEKGEGTLVVTGCSAPRKLGLQLPDLASRLDWGVSFHLDELDDEGKL 203 Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + R + + +++ R+ R + ++++DN + +T E+L Sbjct: 204 SALQLRAELRGFKLPIDVGRFLLNRLSRDMRTLLTTLNQLDNASFRAKRKLTIPFVKEIL 263 Query: 240 K 240 + Sbjct: 264 E 264 >gi|16273145|ref|NP_439382.1| DNA replication initiation factor [Haemophilus influenzae Rd KW20] gi|260581145|ref|ZP_05848965.1| DnaA regulatory inactivator Hda [Haemophilus influenzae RdAW] gi|6136705|sp|O86235|Y122B_HAEIN RecName: Full=Uncharacterized protein HI_1225.1 gi|3212215|gb|AAC22879.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20] gi|260092173|gb|EEW76116.1| DnaA regulatory inactivator Hda [Haemophilus influenzae RdAW] gi|309972964|gb|ADO96165.1| DNA replication initiation factor Had [Haemophilus influenzae R2846] Length = 231 Score = 158 bits (400), Expect = 7e-37, Method: Composition-based stats. Identities = 42/190 (22%), Positives = 84/190 (44%), Gaps = 13/190 (6%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKS----RSTRFSNIAKS-----LDSILIDTRKPVLLE 114 + G GSGK+ L +S++ R+ + ++KS ++ ++ V L+ Sbjct: 41 QPFFYIWGDKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQYFSTAVLENLEQQELVCLD 100 Query: 115 DIDLLDFNDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKI 170 D+ + ND +F + N I +LL+ +A P + V LPDL SRL + ++ Sbjct: 101 DLQSVIGNDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQL 160 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 + D+ KV+ R + + A +++ R+ R + + +D +D +L + Sbjct: 161 NSLTDEQKIKVLQLAAYQRGFQLSDETANFLITRLARDMHTLFEALDLLDKASLQAQRNL 220 Query: 231 TRSLAAEVLK 240 T ++L Sbjct: 221 TIPFVKKILN 230 >gi|145636912|ref|ZP_01792577.1| DNA replication initiation factor [Haemophilus influenzae PittHH] gi|145269993|gb|EDK09931.1| DNA replication initiation factor [Haemophilus influenzae PittHH] Length = 231 Score = 158 bits (400), Expect = 7e-37, Method: Composition-based stats. Identities = 43/190 (22%), Positives = 84/190 (44%), Gaps = 13/190 (6%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKS----RSTRFSNIAKS-----LDSILIDTRKPVLLE 114 + G GSGK+ L +S++ R+ + ++KS ++ ++ V L+ Sbjct: 41 QPFFYIWGDKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQYFSTAVLENLEQQELVCLD 100 Query: 115 DIDLLDFNDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKI 170 D+ + ND +F + N I +LL+ +A P + V LPDL SRL + ++ Sbjct: 101 DLQSVIGNDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQL 160 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 + D+ KV+ R + + A +++ R+ R + K +D +D +L + Sbjct: 161 NSLTDEQKIKVLQLAAYQRGFQLSDETANFLITRLARDMHTLFKALDLLDKASLQAQRNL 220 Query: 231 TRSLAAEVLK 240 T ++L Sbjct: 221 TIPFVKKILN 230 >gi|296104123|ref|YP_003614269.1| ATPase regulatory factor Hda [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058582|gb|ADF63320.1| ATPase regulatory factor Hda [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 197 Score = 158 bits (400), Expect = 7e-37, Method: Composition-based stats. Identities = 33/190 (17%), Positives = 80/190 (42%), Gaps = 13/190 (6%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLE 114 S + + G+G+S L + + + + LD ++ V ++ Sbjct: 7 SGYIYIWSREGAGRSHLLHAACAELSARGDAVGYVPLDKRTWFVPDVLEGMEHLSLVCID 66 Query: 115 DIDLLDFNDT---QLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 +I+ + ++ +F++ N I + LL+T P + LPDL SRL + K+ Sbjct: 67 NIECVAGDEPWEMAIFNLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKL 126 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 D+ + + R + + + ++++R++R + +D++D +++ + Sbjct: 127 QPLSDEDKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFDTLDQLDRASITAQRKL 186 Query: 231 TRSLAAEVLK 240 T ++LK Sbjct: 187 TIPFVKDILK 196 >gi|238788119|ref|ZP_04631914.1| DnaA-homolog protein hda [Yersinia frederiksenii ATCC 33641] gi|238723706|gb|EEQ15351.1| DnaA-homolog protein hda [Yersinia frederiksenii ATCC 33641] Length = 239 Score = 158 bits (400), Expect = 7e-37, Method: Composition-based stats. Identities = 37/232 (15%), Positives = 86/232 (37%), Gaps = 17/232 (7%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVH--SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80 N QL + ++ A++ + G G+S L Sbjct: 8 NTPAQLSLPLYLPDDETFASFYPGENPSLLAAIQSAVHQSH--GSYIYFWSREGGGRSHL 65 Query: 81 ANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFH 128 + K + + + K + ++ V +++I+ + ++ +F+ Sbjct: 66 LHAACAELSQKGEAVGYVPLDKRAYFVPEVLDGMEQLALVCIDNIECIAGDEQWEMAIFN 125 Query: 129 IINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 + N I + LL+T P + LPDL SRL + K+ DD + + Sbjct: 126 LYNRIVETGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDDEKLQALQLRAK 185 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + + + ++++R++R + +D++D +++ +T E+L Sbjct: 186 LRGFELPEDVGRFLLKRLDREMRTLFTTLDQLDRASITAQRKLTIPFVKEIL 237 >gi|332087942|gb|EGI93067.1| dnaA regulatory inactivator Hda [Shigella boydii 5216-82] Length = 225 Score = 158 bits (400), Expect = 8e-37, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 80/190 (42%), Gaps = 13/190 (6%) Query: 64 SRVVILVGPSGSGKSCLANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLE 114 S + L G+G+S L + + + + + K + ++ V ++ Sbjct: 35 SGYIYLWAREGAGRSHLLHAACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCID 94 Query: 115 DIDLLDFNDT---QLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 +I+ + ++ +F + N I + LL+T P + LPDL SRL + K+ Sbjct: 95 NIECIAGDELWEMAIFDLYNRIQESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKL 154 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 D+ + + R + + + ++++R++R + +D++D +++ + Sbjct: 155 QPLSDEDKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKL 214 Query: 231 TRSLAAEVLK 240 T E+LK Sbjct: 215 TIPFVKEILK 224 >gi|261822427|ref|YP_003260533.1| DNA replication initiation factor [Pectobacterium wasabiae WPP163] gi|261606440|gb|ACX88926.1| DnaA regulatory inactivator Hda [Pectobacterium wasabiae WPP163] Length = 235 Score = 158 bits (400), Expect = 8e-37, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 91/232 (39%), Gaps = 17/232 (7%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVH--SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80 N QL + +++ AV ++ + G G+S L Sbjct: 4 NTPAQLSLPLYLPDDETFASFYPGENASLLAAVN--NALYQEHGSYIYFWSREGGGRSHL 61 Query: 81 ANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFH 128 + + R+ + + K + ++ V +++I+ + ++ +F+ Sbjct: 62 LHAACAELSRQERAVGYVPLDKRAYFVPGVLEGMEQLALVCIDNIESIAGDEEWEMAVFN 121 Query: 129 IINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 + N I + LL+T P + LPDL SRL + K+ DD + + Sbjct: 122 LYNRIQETGRARLLITGDRPPRQLNLRLPDLASRLDWGQIYKLQPLSDDEKGEALQLRAR 181 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + + ++ ++++R++R + +D++D+ +++ +T E+L Sbjct: 182 LRGFELPEDVSRFLLKRLDREMRTLFMTLDQLDHASITAQRKLTIPFVKEIL 233 >gi|157144575|ref|YP_001451894.1| DNA replication initiation factor [Citrobacter koseri ATCC BAA-895] gi|167008785|sp|A8AD95|HDA_CITK8 RecName: Full=DnaA-homolog protein hda gi|157081780|gb|ABV11458.1| hypothetical protein CKO_00295 [Citrobacter koseri ATCC BAA-895] Length = 241 Score = 158 bits (400), Expect = 8e-37, Method: Composition-based stats. Identities = 36/231 (15%), Positives = 87/231 (37%), Gaps = 15/231 (6%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDS-WPSWPSRVVILVGPSGSGKSCLA 81 N QL + + + + S + L G+G+S L Sbjct: 10 NTPAQLSLPLYLPDDETFASFWPGD-NASLLAALQNVLRQEHSGYIYLWSREGAGRSHLL 68 Query: 82 NIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHI 129 + + + + + K + ++ V +++I+ + ++ +F + Sbjct: 69 HAACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCIDNIECVAGDELWEMAIFDL 128 Query: 130 INSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N I + LL+T P + LPDL SRL + K+ D+ + + Sbjct: 129 YNRILESGKTRLLITGDRPPRQLKLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARL 188 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + + + ++++R++R + +D++D+ +++ +T E+L Sbjct: 189 RGFELPEDVGRFLLKRLDREMRTLFITLDQLDHASITAQRKLTIPFVKEIL 239 >gi|237807692|ref|YP_002892132.1| DnaA regulatory inactivator Hda [Tolumonas auensis DSM 9187] gi|237499953|gb|ACQ92546.1| DnaA regulatory inactivator Hda [Tolumonas auensis DSM 9187] Length = 234 Score = 158 bits (399), Expect = 8e-37, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 91/231 (39%), Gaps = 15/231 (6%) Query: 24 KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS-RVVILVGPSGSGKSCLAN 82 + QL + + + Q + + + ++ G GSG+S L + Sbjct: 4 QSTQLSLAVQLPDDETFASFYPG-SNAQLITTLKNAAIGEGVPLIYFWGCRGSGRSHLLH 62 Query: 83 IWSDKSRSTRFSNIAKSLDS---------ILIDTRKPVLLEDIDLLDFN---DTQLFHII 130 + S + LD ++ + L+++D + + + LF++ Sbjct: 63 ATCAEINGNGESAVYIPLDRHDQYSPDILEGMERMPLLCLDNLDAVAGSRVWEESLFNLF 122 Query: 131 NSIHQ-YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N + SL+M+A T P G+CLPDL SRL ++ DD+ + A R Sbjct: 123 NRWKETSRGSLIMSASTAPRKLGLCLPDLASRLDWGVSFQLHELDDEGKLGALQLRAALR 182 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + +++ R+ R + + +D +D+ +L +T EVL+ Sbjct: 183 GFKLPVDVGRFLLNRLSRDMRMLLQTLDTLDSASLHAQRKLTIPFIKEVLE 233 >gi|197285430|ref|YP_002151302.1| DNA replication initiation factor [Proteus mirabilis HI4320] gi|227355914|ref|ZP_03840306.1| DNA replication initiation protein A [Proteus mirabilis ATCC 29906] gi|269969361|sp|B4EY85|HDA_PROMH RecName: Full=DnaA-homolog protein hda gi|194682917|emb|CAR43293.1| DnaA-homolog protein [Proteus mirabilis HI4320] gi|227163902|gb|EEI48804.1| DNA replication initiation protein A [Proteus mirabilis ATCC 29906] Length = 248 Score = 158 bits (399), Expect = 8e-37, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 89/233 (38%), Gaps = 17/233 (7%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW--PSWPSRVVILVGPSGSGKSCL 80 N QL + D V I + S + G GKS L Sbjct: 17 NTPSQLSLPLSLPDDETFDSFYAGE-NASLVAAIQTAIHQS-HGSYIYFWSRDGGGKSHL 74 Query: 81 ANIWSDK----SRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFH 128 + + + + + K + ++ V ++++ + ++ LF+ Sbjct: 75 LHAACAELSLAGDAVGYVPLDKRAYFVPDVLEGMEHLSLVCIDNVQCIAGDEEWELALFN 134 Query: 129 IINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 + N + + + LL+T P + LPDL SRL + ++ D+ + + Sbjct: 135 LYNRVLELGRTCLLITGDRPPRQIDLQLPDLASRLDWGQIYRLQPLSDEEKIQALQLRAK 194 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 R + + + ++++R++R + +++D++D+ ++ +T ++LK Sbjct: 195 LRGFELPEDVGRFVLKRLDRKMRTLFEMLDELDHASIVAQRKLTIPFVKDILK 247 >gi|318606683|emb|CBY28181.1| chromosomal replication initiator protein dnaA [Yersinia enterocolitica subsp. palearctica Y11] gi|330863268|emb|CBX73393.1| DnaA-homolog protein hda [Yersinia enterocolitica W22703] Length = 239 Score = 158 bits (399), Expect = 9e-37, Method: Composition-based stats. Identities = 37/232 (15%), Positives = 87/232 (37%), Gaps = 17/232 (7%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVH--SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80 N QL + ++ A++ + + G G+S L Sbjct: 8 NTPAQLSLPLYLPDDETFASFYPGENPSLLAAIQ--SAVRQSHGSYIYFWSREGGGRSHL 65 Query: 81 ANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFH 128 + K + + + K + ++ V +++I+ + ++ +F+ Sbjct: 66 LHAACAELSQKGEAVGYVPLDKRAYFVPEVLDGMEQLALVCIDNIECIAGDEQWEMAMFN 125 Query: 129 IINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 + N I + LL+T P + LPDL SRL + K+ DD + + Sbjct: 126 LYNRIVETGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDDEKLQALQLRAK 185 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + + + ++++R++R + +D++D +++ +T E+L Sbjct: 186 LRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEIL 237 >gi|269138446|ref|YP_003295146.1| DNA replication initiation factor [Edwardsiella tarda EIB202] gi|267984106|gb|ACY83935.1| DNA replication initiation factor [Edwardsiella tarda EIB202] gi|304558472|gb|ADM41136.1| DNA replication initiation factor [Edwardsiella tarda FL6-60] Length = 238 Score = 158 bits (399), Expect = 9e-37, Method: Composition-based stats. Identities = 36/230 (15%), Positives = 83/230 (36%), Gaps = 13/230 (5%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 N QL + L ++ + G G+S L + Sbjct: 7 NTPTQLSLPLYLPDDETFASFYAGENAALLAALQNALRQEHGSYIYFWSREGGGRSHLLH 66 Query: 83 IWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHII 130 + + F + K + ++ V +++I+ + ++ +F++ Sbjct: 67 AACAELSQRGEAVGFVPLDKRAYFVPEVLDGMEQLALVCIDNIECIAGDEAWEMAIFNLY 126 Query: 131 NSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N I + LL+T P + LPDL SRL + K+ D+ + + R Sbjct: 127 NRIQESGRTRLLITGDRPPRQLNLRLPDLASRLDWGQIYKLQPLGDEEKLQALQLRARLR 186 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + + + ++++R++R + +D++D +++ +T E L Sbjct: 187 GFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASIAAQRKLTIPFVKETL 236 >gi|294671139|ref|ZP_06735994.1| hypothetical protein NEIELOOT_02847 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307247|gb|EFE48490.1| hypothetical protein NEIELOOT_02847 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 260 Score = 158 bits (399), Expect = 9e-37, Method: Composition-based stats. Identities = 50/230 (21%), Positives = 94/230 (40%), Gaps = 11/230 (4%) Query: 22 KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 +N QL F F R D L +A + + ++ + V + G GSGKS L Sbjct: 36 QNAVNQLIFDFARSDYPGFDKFL-GTANRELIYVLQQAQD---QFVYVWGQRGSGKSHLL 91 Query: 82 NIWSDKSRSTRFSNIAKSLDSILID----TRKPVLLEDIDLLDFNDTQL-FHIINSIHQ- 135 W ++R + ++ +D + + + ++ D L ++ L F I N Sbjct: 92 KAWVAQAREQGHHAVYIDAETAPLDETALSAEYLAVDGADRLQADEQALLFEIFNRFRNG 151 Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195 LL++A P V DL +R+ V I D+ +V M RQ+ ++ Sbjct: 152 ARGRLLLSADVPPQQLTVR-EDLRTRMGNCLVYDIKPLGDEEKIDALVGMAGARQLALEP 210 Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 ++ Y++ R + +++D + + A + IT L ++LK+ Sbjct: 211 EIFRYLLTYWRRDMDSLVQMLDTLCHYAATTRRRITLPLLRQLLKQQDTP 260 >gi|253687526|ref|YP_003016716.1| DnaA regulatory inactivator Hda [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754104|gb|ACT12180.1| DnaA regulatory inactivator Hda [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 235 Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats. Identities = 37/231 (16%), Positives = 88/231 (38%), Gaps = 15/231 (6%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW-PSWPSRVVILVGPSGSGKSCLA 81 N QL + + I++ + G G+S L Sbjct: 4 NTPAQLSLPLYLPDDETFASFYPGE-NASLLAAINNALHQEHGSYIYFWSREGGGRSHLL 62 Query: 82 NIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHI 129 + + R+ + + K + ++ V +++I+ + ++ +F++ Sbjct: 63 HAACAELSRQERAVGYVPLDKRAYFVPDVLEGMEQLALVCIDNIESIAGDEEWEMAVFNL 122 Query: 130 INSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N I + LL+T P + LPDL SRL + K+ DD + + Sbjct: 123 YNRIQETGRARLLITGDRPPRQLNLHLPDLASRLDWGQIYKLQPLSDDEKGEALQLRARL 182 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + + ++ ++++R++R + +D++D+ +++ +T E+L Sbjct: 183 RGFELPEDVSRFLLKRLDREMRTLFMTLDQLDHASITAQRKLTIPFVKEIL 233 >gi|332162583|ref|YP_004299160.1| DNA replication initiation factor [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666813|gb|ADZ43457.1| DNA replication initiation factor [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 235 Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats. Identities = 37/232 (15%), Positives = 87/232 (37%), Gaps = 17/232 (7%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVH--SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80 N QL + ++ A++ + + G G+S L Sbjct: 4 NTPAQLSLPLYLPDDETFASFYPGENPSLLAAIQ--SAVRQSHGSYIYFWSREGGGRSHL 61 Query: 81 ANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFH 128 + K + + + K + ++ V +++I+ + ++ +F+ Sbjct: 62 LHAACAELSQKGEAVGYVPLDKRAYFVPEVLDGMEQLALVCIDNIECIAGDEQWEMAMFN 121 Query: 129 IINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 + N I + LL+T P + LPDL SRL + K+ DD + + Sbjct: 122 LYNRIVETGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDDEKLQALQLRAK 181 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + + + ++++R++R + +D++D +++ +T E+L Sbjct: 182 LRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEIL 233 >gi|309784767|ref|ZP_07679400.1| dnaA regulatory inactivator Hda [Shigella dysenteriae 1617] gi|308927137|gb|EFP72611.1| dnaA regulatory inactivator Hda [Shigella dysenteriae 1617] Length = 197 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 80/190 (42%), Gaps = 13/190 (6%) Query: 64 SRVVILVGPSGSGKSCLANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLE 114 S + L G+G+S L + + + + + K + ++ V ++ Sbjct: 7 SGYIYLWAREGAGRSHLLHAACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCID 66 Query: 115 DIDLLDFNDT---QLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 +I+ + ++ +F + N I + LL+T P + LPDL SRL + K+ Sbjct: 67 NIECIAGDELWEMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKL 126 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 D+ + + R + + + ++++R++R + +D++D +++ + Sbjct: 127 QPLSDEDKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKL 186 Query: 231 TRSLAAEVLK 240 T E+LK Sbjct: 187 TIPFVKEILK 196 >gi|261340795|ref|ZP_05968653.1| DnaA regulatory inactivator Hda [Enterobacter cancerogenus ATCC 35316] gi|288317219|gb|EFC56157.1| DnaA regulatory inactivator Hda [Enterobacter cancerogenus ATCC 35316] Length = 197 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 33/190 (17%), Positives = 80/190 (42%), Gaps = 13/190 (6%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLE 114 S + + G+G+S L + + + + LD ++ V ++ Sbjct: 7 SGYIYIWSREGAGRSHLLHAACAELSARGDAVGYVPLDKRTWFVPEVLEGMEHLSLVCID 66 Query: 115 DIDLLDFNDT---QLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 +I+ + ++ +F++ N I + LL+T P + LPDL SRL + K+ Sbjct: 67 NIECVAGDEPWEMAIFNLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKL 126 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 D+ + + R + + + ++++R++R + +D++D +++ + Sbjct: 127 QPLSDEDKLQALQLRSRLRGFELPEDVGRFLLKRLDREMRTLFDTLDQLDRASITAQRKL 186 Query: 231 TRSLAAEVLK 240 T ++LK Sbjct: 187 TIPFVKDILK 196 >gi|167854501|ref|ZP_02477282.1| hypothetical protein HPS_01939 [Haemophilus parasuis 29755] gi|167854256|gb|EDS25489.1| hypothetical protein HPS_01939 [Haemophilus parasuis 29755] Length = 236 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 45/234 (19%), Positives = 91/234 (38%), Gaps = 20/234 (8%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 QL + + D+ +++ L ++ + G SGKS L S Sbjct: 1 MQLTLPIHQIDDDTFDNFYAENSLLLLGSLRQNFVDVQQPFFYIWGGKSSGKSHLLKAVS 60 Query: 86 DKSRSTRFSNIAKSLDSI---------LIDTRKPVLLEDIDLLDFNDT---QLFHIINSI 133 + + S LD D V L+DI + ++ +F + N I Sbjct: 61 NHYLLNQQSATYIPLDKSHYFAPTVLDNGDQLDVVCLDDIQAVAGDEEWELAIFDLFNQI 120 Query: 134 HQYDSS--------LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 + LL++A P + LPDL SRL V +++ DD+ ++ + Sbjct: 121 REQQGLFNQGKKTLLLISADCPPHQLAIHLPDLRSRLTWGEVYRLADLDDEQKRIILQRN 180 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 ++ + + ++A ++++R++R L + +D+ +L +T E+L Sbjct: 181 ARNKGLELSDEVANFLLKRLDRDLQALMHKLMLLDHASLQAQRKLTLPFVKEIL 234 >gi|311694193|gb|ADP97066.1| DNA replication initiation factor [marine bacterium HP15] Length = 232 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 89/229 (38%), Gaps = 15/229 (6%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS--RVVILVGPSGSGKSCLAN 82 QL D+ A + ++S P VV+L G + +GKS L Sbjct: 3 ASQLVLGVKLRDDARFDNFH-GDRNTGAAQRLESVCQQPHDMPVVVLCGDADTGKSHLLQ 61 Query: 83 IWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFHII 130 + + S+ + ++T + V L+D+D + + +FH+ Sbjct: 62 AVCHLGEKQGRAAVCISIAELEPFGPDALSGLETHEIVCLDDVDRIAGQRVWEEAIFHLY 121 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N I LL++ P S LPDL SR V+++ + D+ ++ R Sbjct: 122 NRILDRGGLLLVSLADLPASLPFELPDLISRFSHGLVIQLGIYRDEDRLTILRARAEKRG 181 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + + +A+YI++R R L ++D +D +L +T V+ Sbjct: 182 LVMADDVASYIMRRAPRRLGDLLGILDILDENSLQAQRRLTIPFVKTVM 230 >gi|227328295|ref|ZP_03832319.1| DNA replication initiation factor [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 248 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 91/232 (39%), Gaps = 17/232 (7%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVH--SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80 N QL + +++ AV ++ + G G+S L Sbjct: 17 NTPAQLSLPLYLPDDETFASFYPGENASLLAAVN--NALYQEHGSYIYFWSREGGGRSHL 74 Query: 81 ANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFH 128 + + R+ + + K + ++ V +++I+ + ++ +F+ Sbjct: 75 LHAACAELSRQERAVGYVPLDKRAYFVPDVLEGMEQLALVCIDNIESIAGDEEWEMAVFN 134 Query: 129 IINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 + N I + LL+T P + LPDL SRL + K+ DD + + Sbjct: 135 LYNRIQETGRARLLITGDRPPRQLNLRLPDLASRLDWGQIYKLQPLSDDEKGEALQLRAR 194 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + + ++ ++++R++R + +D++D+ +++ +T E+L Sbjct: 195 LRGFELPEDVSRFLLKRLDREMRTLFMTLDQLDHASITAQRKLTIPFVKEIL 246 >gi|219872144|ref|YP_002476519.1| DNA replication initiation factor [Haemophilus parasuis SH0165] gi|219692348|gb|ACL33571.1| DNA replication initiation factor/chromosomal replication initiator DnaA [Haemophilus parasuis SH0165] Length = 246 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 45/233 (19%), Positives = 91/233 (39%), Gaps = 20/233 (8%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL + + D+ +++ L ++ + G SGKS L S+ Sbjct: 12 QLTLPIHQIDDDTFDNFYAENSLLLLGSLRQNFVDVQQPFFYIWGGKSSGKSHLLKAVSN 71 Query: 87 KSRSTRFSNIAKSLDSI---------LIDTRKPVLLEDIDLLDFNDT---QLFHIINSIH 134 + S LD D V L+DI + ++ +F + N I Sbjct: 72 HYLLNQQSATYIPLDKSHYFAPTVLDNGDQLDVVCLDDIQAVAGDEEWELAIFDLFNQIR 131 Query: 135 QYDSS--------LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 + LL++A P + LPDL SRL V +++ DD+ ++ + Sbjct: 132 EQQGLFNQGKKTLLLISADCPPHQLAIHLPDLRSRLTWGEVYRLADLDDEQKRIILQRNA 191 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 ++ + + ++A ++++R++R L + +D+ +L +T E+L Sbjct: 192 RNKGLELSDEVANFLLKRLDRDLQALMHKLMLLDHASLQAQRKLTLPFVKEIL 244 >gi|296161794|ref|ZP_06844596.1| DnaA regulatory inactivator Hda [Burkholderia sp. Ch1-1] gi|295887958|gb|EFG67774.1| DnaA regulatory inactivator Hda [Burkholderia sp. Ch1-1] Length = 256 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 48/230 (20%), Positives = 89/230 (38%), Gaps = 9/230 (3%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLID---SWPSWP--SRVVILVGPSGSGKSCL 80 QL + D+ + E RL + + + P R + G SGSG++ L Sbjct: 3 RQLTLDLGTPPPSTFDNFFAGANAELVTRLRELDNALAAGPVADRTFYIWGESGSGRTHL 62 Query: 81 ANIWSDKS--RSTRFSNIAKSLDSILIDTRKPV-LLEDIDLL-DFNDTQLFHIINSIHQY 136 ++ RF+ SL + D R + ++D D L +F++ N + + Sbjct: 63 LQALVHEAPPGHARFAGPQSSLAAFSFDPRVALYAIDDCDALSAAQQIAVFNLFNEVRAH 122 Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196 +S L+ A P DL +RL V ++ D+ V+ +R I + Sbjct: 123 PTSALVAAGNAPPIGMTVREDLRTRLGWGLVFHLTPLPDEDKAAVLKHAARERGIMLADD 182 Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + AY++ R + L+D +D +L + +T L +L + Sbjct: 183 VPAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRTMLASPDAEE 232 >gi|114798512|ref|YP_760956.1| hypothetical protein HNE_2261 [Hyphomonas neptunium ATCC 15444] gi|114738686|gb|ABI76811.1| conserved hypothetical protein [Hyphomonas neptunium ATCC 15444] Length = 243 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 56/227 (24%), Positives = 94/227 (41%), Gaps = 5/227 (2%) Query: 22 KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 ++ Q SFP D L+ E AV L +W + + + GP+ G + LA Sbjct: 9 QDGPAQPLLSFPV-PVAHWDGLISGGPNEAAVGLASRPEAWATHALCVTGPARCGLTYLA 67 Query: 82 NIWSDKSRSTRFSNI---AKSLDSILIDTRKPVLLEDIDLLDFN-DTQLFHIINSIHQYD 137 W+ + + A L ++ V L+D+D++ D L N I Sbjct: 68 RAWAGRFGGQYMTAAEFGALKLGALDGLAGGYVALDDVDMIAARRDEPLLLFYNMIAAKG 127 Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 +L+ A T P W + DL SRL + V +IS PD+ + + A R + + + Sbjct: 128 GRVLLVAHTGPAGWRTGIADLRSRLNSMPVAEISQPDEAHVRARLRAAAAQRFMKLSPET 187 Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 Y+V R++ S E L+D++ G +LA VL+ + Sbjct: 188 INYLVPRIDLSYEAIETLMDRLSGEVSIAGKAPGLALARLVLEGLDE 234 >gi|238919123|ref|YP_002932637.1| DNA replication initiation factor [Edwardsiella ictaluri 93-146] gi|238868691|gb|ACR68402.1| DnaA regulatory inactivator Hda, putative [Edwardsiella ictaluri 93-146] Length = 238 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 36/230 (15%), Positives = 83/230 (36%), Gaps = 13/230 (5%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 N QL + L ++ + G G+S L + Sbjct: 7 NTPTQLSLPLYLPDDETFSSFYAGENAALLAALQNALRQEHGSYIYFWSREGGGRSHLLH 66 Query: 83 IWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFN---DTQLFHII 130 + + F + K + ++ V +++I+ + + + +F++ Sbjct: 67 AACAELSQRGEAVGFVPLDKRAYFVPEVLDGMEQLALVCIDNIECIAGDGAWEMAIFNLY 126 Query: 131 NSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N I + LL+T P + LPDL SRL + K+ D+ + + R Sbjct: 127 NRIQESGRTRLLITGDRPPRQLNLRLPDLASRLDWGQIYKLQPLGDEEKLQALQLRARLR 186 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + + + ++++R++R + +D++D +++ +T E L Sbjct: 187 GFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASIAAQRKLTIPFVKETL 236 >gi|148825820|ref|YP_001290573.1| DNA replication initiation factor [Haemophilus influenzae PittEE] gi|148715980|gb|ABQ98190.1| hypothetical protein CGSHiEE_03865 [Haemophilus influenzae PittEE] Length = 231 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 43/190 (22%), Positives = 84/190 (44%), Gaps = 13/190 (6%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKS----RSTRFSNIAKS-----LDSILIDTRKPVLLE 114 + G GSGK+ L +S++ R+ + ++KS ++ ++ V L+ Sbjct: 41 QPFFYIWGDKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQYFSTAVLENLEQQELVCLD 100 Query: 115 DIDLLDFNDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKI 170 D+ + ND +F + N I +LL+ +A P + V LPDL SRL + ++ Sbjct: 101 DLQSVIGNDEWELAIFDLFNQIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQL 160 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 + D+ KV+ R + + A +++ R+ R + K +D +D +L + Sbjct: 161 NSLTDEQKIKVLQLAAYQRGFQLSDETANFLITRLARDMHTLFKALDLLDKASLQAQRNL 220 Query: 231 TRSLAAEVLK 240 T ++L Sbjct: 221 TIPFVKKILN 230 >gi|330007332|ref|ZP_08305940.1| DnaA regulatory inactivator Hda [Klebsiella sp. MS 92-3] gi|328535477|gb|EGF61942.1| DnaA regulatory inactivator Hda [Klebsiella sp. MS 92-3] Length = 225 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 32/190 (16%), Positives = 81/190 (42%), Gaps = 13/190 (6%) Query: 64 SRVVILVGPSGSGKSCLANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLE 114 S + + G+G+S L + + + + + K + ++ V ++ Sbjct: 35 SGYIYIWSREGAGRSHLLHAACAELSQRGDAVGYVPLDKRTWFVPEVLEGMEQLALVCID 94 Query: 115 DIDLLDFNDT---QLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 +I+ + ++ +F++ N I + LL+T P + LPDL SRL + K+ Sbjct: 95 NIECVAGDEPWEMAIFNLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKL 154 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 D+ + + R + + + ++++R++R + +D++D+ +++ + Sbjct: 155 QPLSDEDKLQALQLRARLRGFEMPEDVCRFLLKRLDREMRSLFMTLDQLDHASITAQRKL 214 Query: 231 TRSLAAEVLK 240 T +LK Sbjct: 215 TIPFVKAILK 224 >gi|146312625|ref|YP_001177699.1| DNA replication initiation factor [Enterobacter sp. 638] gi|145319501|gb|ABP61648.1| regulatory inactivation of DnaA Hda protein [Enterobacter sp. 638] Length = 197 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 32/190 (16%), Positives = 81/190 (42%), Gaps = 13/190 (6%) Query: 64 SRVVILVGPSGSGKSCLANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLE 114 S + + G+G+S L + + + + + K + ++ V ++ Sbjct: 7 SGYIYIWSREGAGRSHLLHAACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCID 66 Query: 115 DIDLLDFNDT---QLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 +I+ + ++ +F++ N I + LL+T P + LPDL SRL + K+ Sbjct: 67 NIECIAGDEQWEMAMFNLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKL 126 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 D+ + + R + + + ++++R++R + +D++D+ +++ + Sbjct: 127 QPLSDEDKLQALQLRSRLRGFELPEDVGRFLLKRLDREMRTLFDTLDQLDHASITAQRKL 186 Query: 231 TRSLAAEVLK 240 T + LK Sbjct: 187 TIPFVKDTLK 196 >gi|289664537|ref|ZP_06486118.1| hypothetical protein XcampvN_16063 [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289667896|ref|ZP_06488971.1| hypothetical protein XcampmN_05173 [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 233 Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 89/233 (38%), Gaps = 25/233 (10%) Query: 27 QLFFSFPRCLGISRDDLLVHSA------IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80 QL + D + A + W + L G +G+GK+ L Sbjct: 5 QLPLALRAPPDQRFDSYIAAPDGLLTQLQALAAGQVSDW-------LYLSGSAGTGKTHL 57 Query: 81 A---NIWSDKSRSTR----FSNIAKSLDSIL--IDTRKPVLLEDIDLLDF---NDTQLFH 128 A ++++ T A L L ++ R V L+ ++ + ++ LF Sbjct: 58 ALSLCAAAEQAGRTPAYLPLQAAAGRLRDALEALEGRSLVALDGVESIAGQRDDEVALFD 117 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N +LL TAR P + LPDL SRL + + + DD V+ Sbjct: 118 FHNRARAAGITLLYTARQMPDGLALVLPDLHSRLSQCIRIGLPVLDDAARAAVLRDRAQR 177 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 R + +D+ +++ ER L L+D++D +L+ IT VL++ Sbjct: 178 RGLALDEAAIDWLLTHSERELAGLVALLDRLDRESLAAKRRITVPFLRRVLED 230 >gi|323524829|ref|YP_004226982.1| DnaA regulatory inactivator Hda [Burkholderia sp. CCGE1001] gi|323381831|gb|ADX53922.1| DnaA regulatory inactivator Hda [Burkholderia sp. CCGE1001] Length = 247 Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 90/228 (39%), Gaps = 9/228 (3%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLID---SWPSWP--SRVVILVGPSGSGKSCL 80 QL + ++ + E RL + + + P R + G +GSG++ L Sbjct: 3 RQLTLDLGTPPPSTFENFFAGTNAELVTRLRELDSALAAGPVADRTFYIWGEAGSGRTHL 62 Query: 81 ANIWSDKS--RSTRFSNIAKSLDSILIDTRKPV-LLEDIDLL-DFNDTQLFHIINSIHQY 136 ++ RF+ SL + D R + ++D D L +F++ N + + Sbjct: 63 LQALVHEAPPGHARFAGPQSSLAAFGFDPRIALYAIDDCDGLSAAQQIAVFNLFNEVRAH 122 Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196 +S L+ A P DL +RL V ++ D+ V+ + +R I + Sbjct: 123 PTSALVAAGNAPPIGMTVREDLRTRLGWGLVFHLAPLPDEAKAAVLKRAARERGIMLADD 182 Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 + AY++ R + L+D +D +L + +T L +L Q Sbjct: 183 VPAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRTMLASPGQ 230 >gi|237749033|ref|ZP_04579513.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13] gi|229380395|gb|EEO30486.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13] Length = 224 Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 87/223 (39%), Gaps = 5/223 (2%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSR--VVILVGPSGSGKSCLANI 83 +QL + S D L + V L+ SR V L G + +GK+ L Sbjct: 2 QQLLLNLDTGNAPSLDTYLTGQ-NGEVVHLLREIAYRTSREHFVYLWGDNATGKTHLLKA 60 Query: 84 WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN-DTQLFHIINSIHQYDSSLLM 142 S S + + A D LL+D + LD F++ N + + + ++ Sbjct: 61 LSQFSPARYIPSDAPETDFSYSPQCNLYLLDDCERLDSQKQIAAFNLFNQVRENNGYMIT 120 Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 + P++ + DL SRL V +I D+ + + R I + Y++ Sbjct: 121 SGPCTPLALDLR-DDLKSRLCWGLVYQIKSLSDEEKMAALNEQARQRGFTISPGVLPYLI 179 Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 +R + ++D +D +L IT L ++L++ Q+ Sbjct: 180 THYQRDMHSLSMILDALDRYSLQTKRTITLPLLHDLLQQKQEP 222 >gi|187775811|ref|ZP_02798598.2| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4196] gi|189405751|ref|ZP_02823873.2| DnaA family protein Hda [Escherichia coli O157:H7 str. EC508] gi|194432059|ref|ZP_03064348.1| DnaA family protein Hda [Shigella dysenteriae 1012] gi|293415759|ref|ZP_06658402.1| DnaA regulatory inactivator Hda [Escherichia coli B185] gi|312967773|ref|ZP_07781988.1| dnaA regulatory inactivator Hda [Escherichia coli 2362-75] gi|312973265|ref|ZP_07787437.1| dnaA regulatory inactivator Hda [Escherichia coli 1827-70] gi|331658634|ref|ZP_08359578.1| DnaA regulatory inactivator Hda [Escherichia coli TA206] gi|331664053|ref|ZP_08364963.1| DnaA regulatory inactivator Hda [Escherichia coli TA143] gi|331669238|ref|ZP_08370086.1| DnaA regulatory inactivator Hda [Escherichia coli TA271] gi|331684138|ref|ZP_08384734.1| DnaA regulatory inactivator Hda [Escherichia coli H299] gi|187770564|gb|EDU34408.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4196] gi|189378688|gb|EDU97104.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC508] gi|194419588|gb|EDX35668.1| DnaA family protein Hda [Shigella dysenteriae 1012] gi|291433407|gb|EFF06386.1| DnaA regulatory inactivator Hda [Escherichia coli B185] gi|310331860|gb|EFP99095.1| dnaA regulatory inactivator Hda [Escherichia coli 1827-70] gi|312287970|gb|EFR15875.1| dnaA regulatory inactivator Hda [Escherichia coli 2362-75] gi|313650956|gb|EFS15356.1| dnaA regulatory inactivator Hda [Shigella flexneri 2a str. 2457T] gi|315615739|gb|EFU96371.1| dnaA regulatory inactivator Hda [Escherichia coli 3431] gi|320185194|gb|EFW59974.1| Chromosomal replication initiator protein DnaA [Shigella flexneri CDC 796-83] gi|323156100|gb|EFZ42259.1| dnaA regulatory inactivator Hda [Escherichia coli EPECa14] gi|323159349|gb|EFZ45334.1| dnaA regulatory inactivator Hda [Escherichia coli E128010] gi|323169062|gb|EFZ54739.1| dnaA regulatory inactivator Hda [Shigella sonnei 53G] gi|323170235|gb|EFZ55888.1| dnaA regulatory inactivator Hda [Escherichia coli LT-68] gi|323177383|gb|EFZ62971.1| dnaA regulatory inactivator Hda [Escherichia coli 1180] gi|323184446|gb|EFZ69821.1| dnaA regulatory inactivator Hda [Escherichia coli 1357] gi|323188212|gb|EFZ73505.1| dnaA regulatory inactivator Hda [Escherichia coli RN587/1] gi|323936388|gb|EGB32678.1| DnaA regulatory inactivator Hda [Escherichia coli E1520] gi|323941245|gb|EGB37430.1| DnaA regulatory inactivator Hda [Escherichia coli E482] gi|323944717|gb|EGB40784.1| DnaA regulatory inactivator Hda [Escherichia coli H120] gi|323949483|gb|EGB45371.1| DnaA regulatory inactivator Hda [Escherichia coli H252] gi|323955733|gb|EGB51491.1| DnaA regulatory inactivator Hda [Escherichia coli H263] gi|323961290|gb|EGB56902.1| DnaA regulatory inactivator Hda [Escherichia coli H489] gi|323967940|gb|EGB63352.1| DnaA regulatory inactivator Hda [Escherichia coli M863] gi|323970981|gb|EGB66230.1| DnaA regulatory inactivator Hda [Escherichia coli TA007] gi|323977326|gb|EGB72412.1| DnaA regulatory inactivator Hda [Escherichia coli TW10509] gi|324118160|gb|EGC12057.1| DnaA regulatory inactivator Hda [Escherichia coli E1167] gi|326344976|gb|EGD68720.1| Chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. 1044] gi|327252146|gb|EGE63818.1| dnaA regulatory inactivator Hda [Escherichia coli STEC_7v] gi|331054299|gb|EGI26326.1| DnaA regulatory inactivator Hda [Escherichia coli TA206] gi|331059852|gb|EGI31829.1| DnaA regulatory inactivator Hda [Escherichia coli TA143] gi|331064432|gb|EGI36343.1| DnaA regulatory inactivator Hda [Escherichia coli TA271] gi|331079090|gb|EGI50292.1| DnaA regulatory inactivator Hda [Escherichia coli H299] gi|332089745|gb|EGI94846.1| dnaA regulatory inactivator Hda [Shigella dysenteriae 155-74] gi|332092792|gb|EGI97861.1| dnaA regulatory inactivator Hda [Shigella boydii 3594-74] gi|332344316|gb|AEE57650.1| DNA-A regulatory inactivation protein [Escherichia coli UMNK88] gi|332755140|gb|EGJ85505.1| dnaA regulatory inactivator Hda [Shigella flexneri 4343-70] gi|332755541|gb|EGJ85905.1| dnaA regulatory inactivator Hda [Shigella flexneri K-671] gi|332756537|gb|EGJ86888.1| dnaA regulatory inactivator Hda [Shigella flexneri 2747-71] gi|333001633|gb|EGK21201.1| dnaA regulatory inactivator Hda [Shigella flexneri VA-6] gi|333001784|gb|EGK21350.1| dnaA regulatory inactivator Hda [Shigella flexneri K-218] gi|333002286|gb|EGK21850.1| dnaA regulatory inactivator Hda [Shigella flexneri K-272] gi|333016108|gb|EGK35440.1| dnaA regulatory inactivator Hda [Shigella flexneri K-227] gi|333016366|gb|EGK35697.1| dnaA regulatory inactivator Hda [Shigella flexneri K-304] Length = 225 Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 80/190 (42%), Gaps = 13/190 (6%) Query: 64 SRVVILVGPSGSGKSCLANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLE 114 S + L G+G+S L + + + + + K + ++ V ++ Sbjct: 35 SGYIYLWAREGAGRSHLLHAACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCID 94 Query: 115 DIDLLDFNDT---QLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 +I+ + ++ +F + N I + LL+T P + LPDL SRL + K+ Sbjct: 95 NIECIAGDELWEMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKL 154 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 D+ + + R + + + ++++R++R + +D++D +++ + Sbjct: 155 QPLSDEDKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKL 214 Query: 231 TRSLAAEVLK 240 T E+LK Sbjct: 215 TIPFVKEILK 224 >gi|91774560|ref|YP_544316.1| regulatory inactivation of DnaA Hda protein [Methylobacillus flagellatus KT] gi|91708547|gb|ABE48475.1| regulatory inactivation of DnaA Hda protein [Methylobacillus flagellatus KT] Length = 205 Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats. Identities = 37/220 (16%), Positives = 84/220 (38%), Gaps = 20/220 (9%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW--PSWPSRVVILVGPSGSGKSCLANI 83 +QL S D+ V +A+ + +R + L G +G GK+ L Sbjct: 2 KQLLLDIQPPAAPSLDNF-VTGRNAEALFQLRRTVLEHDDARFIYLWGETGCGKTHLIQA 60 Query: 84 WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT-QLFHIINSIHQYDSSLLM 142 + + ++ + ++D+ LL +D LF + N + + L++ Sbjct: 61 CNALASASGLD---------------MICVDDVHLLSNDDQVALFDLYNQLRESGGRLIV 105 Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 + P G+ DL +RL ++ D+ + + R + + ++ Y + Sbjct: 106 SGLAAPSQMGLR-DDLATRLAWGLSYQLHPLSDEEKTQALKNHAEARGMKLPDEVLDYCL 164 Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + R + +D +D +L +T L ++L+ + Sbjct: 165 RHLRRDMPSLIATIDALDEWSLISKRAVTLPLLKQLLQTS 204 >gi|50120196|ref|YP_049363.1| DNA replication initiation factor [Pectobacterium atrosepticum SCRI1043] gi|57012731|sp|Q6D7R8|HDA_ERWCT RecName: Full=DnaA-homolog protein hda gi|49610722|emb|CAG74167.1| conserved hypothetical protein [Pectobacterium atrosepticum SCRI1043] Length = 238 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 92/232 (39%), Gaps = 17/232 (7%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVH--SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80 N QL + +++ AV ++ + G G+S L Sbjct: 7 NTPAQLSLPLYLPDDETFASFYPGENASLLAAVN--NALYQEHGSYIYFWSREGGGRSHL 64 Query: 81 ANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFH 128 + + R+ + + K + ++ V +++I+ + ++ +F+ Sbjct: 65 LHAACAELSRQERAVGYVPLDKRAYFVPDVLEGMEQLALVCIDNIESIAGDEAWEMAVFN 124 Query: 129 IINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 + N I + +LL+ T P + LPDL SRL + K+ DD + + Sbjct: 125 LYNRIQETGRALLLITGDRPPRQLNIRLPDLASRLDWGQIYKLQPLSDDEKGEALQLRAR 184 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + + ++ ++++R++R + +D++D+ +++ +T E+L Sbjct: 185 LRGFELPEDVSRFLLKRLDREMRTLFMTLDQLDHASITAQRKLTIPFVKEIL 236 >gi|123441472|ref|YP_001005458.1| DNA replication initiation factor [Yersinia enterocolitica subsp. enterocolitica 8081] gi|254800193|sp|A1JL00|HDA_YERE8 RecName: Full=DnaA-homolog protein hda gi|122088433|emb|CAL11225.1| conserved hypothetical protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 239 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 37/232 (15%), Positives = 86/232 (37%), Gaps = 17/232 (7%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVH--SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80 N QL + ++ A++ + G G+S L Sbjct: 8 NTPAQLSLPLYLPDDETFASFYPGENPSLLAAIQSAVHQSH--GSYIYFWSREGGGRSHL 65 Query: 81 ANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFH 128 + K + + + K + ++ V +++I+ + ++ +F+ Sbjct: 66 LHAACAELSQKGEAVGYVPLDKRAYFVPEVLDGMEQLALVCIDNIECIAGDEQWEMAMFN 125 Query: 129 IINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 + N I + LL+T P + LPDL SRL + K+ DD + + Sbjct: 126 LYNRIVETGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDDEKLQALQLRAK 185 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + + + ++++R++R + +D++D +++ +T E+L Sbjct: 186 LRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEIL 237 >gi|238763600|ref|ZP_04624561.1| DnaA-homolog protein hda [Yersinia kristensenii ATCC 33638] gi|238698232|gb|EEP90988.1| DnaA-homolog protein hda [Yersinia kristensenii ATCC 33638] Length = 239 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 36/232 (15%), Positives = 86/232 (37%), Gaps = 17/232 (7%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVH--SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80 N QL + ++ A++ + G G+S L Sbjct: 8 NTPAQLSLPLYLPDDETFASFYPGENPSLLAAIQSAVHQSH--GSYIYFWSREGGGRSHL 65 Query: 81 ANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFH 128 + K + + + K + ++ + +++I+ + ++ +F+ Sbjct: 66 LHAACAELSQKGEAVGYVPLDKRAYFVPEVLDGMEQLALICIDNIECIAGDEQWEMAIFN 125 Query: 129 IINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 + N I + LL+T P + LPDL SRL + K+ DD + + Sbjct: 126 LYNRIVETGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDDEKLQALQLRAK 185 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + + + ++++R++R + +D++D +++ +T E+L Sbjct: 186 LRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEIL 237 >gi|294635428|ref|ZP_06713917.1| DnaA regulatory inactivator Hda [Edwardsiella tarda ATCC 23685] gi|291091197|gb|EFE23758.1| DnaA regulatory inactivator Hda [Edwardsiella tarda ATCC 23685] Length = 238 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 36/230 (15%), Positives = 84/230 (36%), Gaps = 13/230 (5%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 N QL + L ++ + + G G+S L + Sbjct: 7 NTPTQLSLPLYLPDDETFASFYAGENAALLAALQNALRQEHASYIYFWSREGGGRSHLLH 66 Query: 83 IWSDK----SRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHII 130 + + F + K + ++ V +++I+ + ++ +F++ Sbjct: 67 AACAEMSQHGEAVGFVPLDKRAYFVPEVLDGMEQLALVCIDNIECIAGDEAWEMAIFNLY 126 Query: 131 NSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N I + LL+T P + LPDL SRL + K+ D+ + + R Sbjct: 127 NRIQESGRSRLLITGDRPPRQLNLHLPDLASRLDWGQIYKLQPLGDEEKLQALQLRARLR 186 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + + + ++++R++R + +D++D +++ +T E L Sbjct: 187 GFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKETL 236 >gi|238792097|ref|ZP_04635733.1| DnaA-homolog protein hda [Yersinia intermedia ATCC 29909] gi|238728728|gb|EEQ20246.1| DnaA-homolog protein hda [Yersinia intermedia ATCC 29909] Length = 239 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 37/232 (15%), Positives = 85/232 (36%), Gaps = 17/232 (7%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVH--SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80 N QL + ++ A++ + G G+S L Sbjct: 8 NTPAQLSLPLYLPDDETFASFYPGENPSLLAAIQSTVHQSH--GSYIYFWSREGGGRSHL 65 Query: 81 ANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFH 128 + K + + + K + ++ V +++I+ + ++ +F+ Sbjct: 66 LHAACAELSQKGEAVGYVPLDKRAYFVPEVLDGMEQLALVCIDNIECIAGDEQWEMAIFN 125 Query: 129 IINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 + N I + LL+T P + LPDL SRL + K+ DD + + Sbjct: 126 LYNRIVETGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDDEKLQALQLRAK 185 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + + + ++++R++R + +D++D +++ +T E L Sbjct: 186 LRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKETL 237 >gi|170767200|ref|ZP_02901653.1| DnaA regulatory inactivator Hda [Escherichia albertii TW07627] gi|170123534|gb|EDS92465.1| DnaA regulatory inactivator Hda [Escherichia albertii TW07627] Length = 225 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 81/190 (42%), Gaps = 13/190 (6%) Query: 64 SRVVILVGPSGSGKSCLANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLE 114 S + L G+G+S L + + + + + K + ++ V ++ Sbjct: 35 SGYIYLWAREGAGRSHLLHAACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEQLSLVCID 94 Query: 115 DIDLLDFNDT---QLFHIINSIHQYD-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 +I+ + ++ +F + N I + + LL+T P + LPDL SRL + K+ Sbjct: 95 NIECIAGDELWEMAIFDLYNRILESGNTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKL 154 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 D+ + + R + + + ++++R++R + +D++D +++ + Sbjct: 155 QPLSDEDKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKL 214 Query: 231 TRSLAAEVLK 240 T E+LK Sbjct: 215 TIPFVKEILK 224 >gi|220935417|ref|YP_002514316.1| regulatory inactivation of DnaA Hda protein [Thioalkalivibrio sp. HL-EbGR7] gi|219996727|gb|ACL73329.1| regulatory inactivation of DnaA Hda protein [Thioalkalivibrio sp. HL-EbGR7] Length = 233 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 90/233 (38%), Gaps = 18/233 (7%) Query: 24 KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP-SRVVILVGPSGSGKSCLAN 82 + QL G D A A+ + + R + L G GSGK+ L Sbjct: 2 QARQLTLDVTLPDGSDFDAFHAG-ANGLALDSLRALARGEGERQLYLYGEPGSGKTHLLQ 60 Query: 83 IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF--------------NDTQLFH 128 + ++ + A L + L+ LE +D LD +T LF+ Sbjct: 61 AACHE--ASLWGRRAAYLPAFLLRQGGAHALEGLDQLDLVCLDGISALVGCVETETGLFN 118 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 +IN+ D+ L++ P + LPDL SRL V ++ DD V+V+ Sbjct: 119 LINASRCRDTRLVLADTHAPRALSAALPDLGSRLVWGPVFQLQPLDDAGKRAVLVERARR 178 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 R + ++ ++++ R L +++++ +L +T A VL E Sbjct: 179 RGFDLPGEVGEFLLRTCARDLATLMVQLERLEQASLRDQRRVTLPFARAVLGE 231 >gi|227115371|ref|ZP_03829027.1| DNA replication initiation factor [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 248 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 91/232 (39%), Gaps = 17/232 (7%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVH--SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80 N QL + +++ AV ++ + G G+S L Sbjct: 17 NTPAQLSLPLYLPDDETFASFYPGENASLLAAVN--NALYQEHGSYIYFWSREGGGRSHL 74 Query: 81 ANIWSDK----SRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFH 128 + + R+ + + K + ++ V +++I+ + ++ +F+ Sbjct: 75 LHAACAELSRLERAVGYVPLDKRAYFVPDVLEGMEQLALVCIDNIESIAGDEEWEMAVFN 134 Query: 129 IINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 + N I + LL+T P + LPDL SRL + K+ DD + + Sbjct: 135 LYNRIQETGRARLLITGDRPPRQLNLRLPDLASRLDWGQIYKLQPLSDDEKGEALQLRAR 194 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + + ++ ++++R++R + +D++D+ +++ +T E+L Sbjct: 195 LRGFELPEDVSRFLLKRLDREMRTLFMTLDQLDHASITAQRKLTIPFVKEIL 246 >gi|238756100|ref|ZP_04617422.1| DnaA-homolog protein hda [Yersinia ruckeri ATCC 29473] gi|238705706|gb|EEP98101.1| DnaA-homolog protein hda [Yersinia ruckeri ATCC 29473] Length = 235 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 86/232 (37%), Gaps = 17/232 (7%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVH--SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80 N QL + ++ A++ + G G+S L Sbjct: 4 NTPAQLSLPLYLPDDETFASFYPGENPSLLAAIQAAVHQSH--GSYIYFWSREGGGRSHL 61 Query: 81 ANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFH 128 + + + + + K + ++ V +++I+ + ++ +F+ Sbjct: 62 LHAACAELSQQGEAVGYVPLDKRAYFVPEVLDGMEQLALVCIDNIECIAGDEEWEMAIFN 121 Query: 129 IINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 + N I + LL+T P + LPDL SRL + K+ DD + + Sbjct: 122 LYNRIVETGRTRLLITGDRPPRQLNLRLPDLASRLDWGQIYKLQPLSDDEKLQALQLRAK 181 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + + + ++++R++R + +D++D +++ +T ++L Sbjct: 182 LRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKDIL 233 >gi|261345966|ref|ZP_05973610.1| DnaA regulatory inactivator Hda [Providencia rustigianii DSM 4541] gi|282566054|gb|EFB71589.1| DnaA regulatory inactivator Hda [Providencia rustigianii DSM 4541] Length = 204 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 33/190 (17%), Positives = 77/190 (40%), Gaps = 13/190 (6%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLE 114 + G GKS L + + + LD ++ V ++ Sbjct: 14 GSYIYYWSREGGGKSHLLHAACAELSEQGIAVGYVPLDKRAYFVPEVLEGMEHLSLVCID 73 Query: 115 DIDLLDFNDT---QLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 +I + ++ +F++ N I + + LL+T P + LPDL SRL + K+ Sbjct: 74 NIQCIAGDEEWEMAIFNLYNRILEIGRTCLLITGDRPPRQIDLKLPDLASRLDWGQIYKL 133 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 D+ + + R + + + ++++R++R + +++K+D+ ++ + Sbjct: 134 HPLSDEDKIHALQLRASIRGFELPEDVCRFVLKRLDRKMGTLFDILNKLDHASIVAQRKM 193 Query: 231 TRSLAAEVLK 240 T ++LK Sbjct: 194 TIPFVKDILK 203 >gi|91781892|ref|YP_557098.1| hypothetical protein Bxe_A3953 [Burkholderia xenovorans LB400] gi|91685846|gb|ABE29046.1| Conserved hypothetical protein [Burkholderia xenovorans LB400] Length = 256 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 48/230 (20%), Positives = 89/230 (38%), Gaps = 9/230 (3%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLID---SWPSWP--SRVVILVGPSGSGKSCL 80 QL + D+ + E RL + + + P R + G SGSG++ L Sbjct: 3 RQLTLDLGTPPPSTFDNFFAGANAELVTRLRELDNALAAGPVADRTFYIWGESGSGRTHL 62 Query: 81 ANIWSDKS--RSTRFSNIAKSLDSILIDTRKPV-LLEDIDLL-DFNDTQLFHIINSIHQY 136 ++ RF+ SL + D R + ++D D L +F++ N + + Sbjct: 63 LQALVHEAPPGHARFAGPQSSLAAFGFDPRVALYAIDDCDALSAAQQIAVFNLFNEVRAH 122 Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196 +S L+ A P DL +RL V ++ D+ V+ +R I + Sbjct: 123 PTSALVAAGNAPPIGMTVREDLRTRLGWGLVFHLAPLPDEDKAAVLKHAARERGIMLADD 182 Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + AY++ R + L+D +D +L + +T L +L + Sbjct: 183 VPAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRTMLASPDAEE 232 >gi|238760496|ref|ZP_04621632.1| DnaA-homolog protein hda [Yersinia aldovae ATCC 35236] gi|238701293|gb|EEP93874.1| DnaA-homolog protein hda [Yersinia aldovae ATCC 35236] Length = 239 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 36/232 (15%), Positives = 86/232 (37%), Gaps = 17/232 (7%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVH--SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80 N QL + ++ A++ + G G+S L Sbjct: 8 NTPAQLSLPLYLPDDETFASFYPGENPSLLAAIQSAVHQSH--GSYIYFWSREGGGRSHL 65 Query: 81 ANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFH 128 + + + + + K + ++ V +++I+ + ++ +F+ Sbjct: 66 LHAACAELSQQGEAVGYVPLDKRAYFVPEVLDGMEQLALVCIDNIECIAGDEMWEMAMFN 125 Query: 129 IINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 + N I + LL+T P + LPDL SRL + K+ DD + + Sbjct: 126 LYNRIVETGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDDEKLQALQLRAK 185 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + + + ++++R++R + +D++D +++ +T E+L Sbjct: 186 LRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEIL 237 >gi|161612751|ref|YP_001586716.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|197301043|ref|ZP_02663254.2| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|205356906|ref|ZP_02343245.2| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|161362115|gb|ABX65883.1| hypothetical protein SPAB_00450 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|197288946|gb|EDY28319.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|205325251|gb|EDZ13090.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|321222802|gb|EFX47873.1| Chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] Length = 225 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 81/190 (42%), Gaps = 13/190 (6%) Query: 64 SRVVILVGPSGSGKSCLANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLE 114 S + L G+G+S L + + + + + K + ++ V ++ Sbjct: 35 SGYIYLWAREGAGRSHLLHAACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCID 94 Query: 115 DIDLLDFNDT---QLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 +I+ + ++ +F + N I + LL+T P + LPDL SRL + K+ Sbjct: 95 NIECVAGDELWEMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKL 154 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 D+ + + R + + + ++++R++R + +D++D+ +++ + Sbjct: 155 QPLSDEDKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDHASITAQRKL 214 Query: 231 TRSLAAEVLK 240 T E+LK Sbjct: 215 TIPFVKEILK 224 >gi|254355934|ref|ZP_04972212.1| chromosomal replication initiator protein DnaA [Burkholderia mallei 2002721280] gi|148024909|gb|EDK83087.1| chromosomal replication initiator protein DnaA [Burkholderia mallei 2002721280] Length = 341 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 95/231 (41%), Gaps = 11/231 (4%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLID---SWPSWP--SRVVILVGPSGSGKSCL 80 QL + D+ + E RL + + + P R + G +GSG+S L Sbjct: 105 RQLTLDLGTPPPSTFDNFYSGTNAELVTRLRELDLALAAGPVADRTFYVWGEAGSGRSHL 164 Query: 81 ANIWSDKS--RSTRFSNIAKSLDSILIDTRKPV-LLEDIDLL-DFNDTQLFHIINSIHQY 136 + R+ + LD++ D R + ++D D L D LF++ N + + Sbjct: 165 LQALVHDTTYGHARYVSPQGGLDALAFDPRVSLYAVDDCDALNDAQQIALFNLFNEVRAH 224 Query: 137 D-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195 ++L++ P++ V DL +RL V ++ D+ V+ +R I + Sbjct: 225 PMTALVVAGPAAPLALDVR-EDLRTRLGWGLVFHLAPLTDEGKAAVLKHAAKERGIALAD 283 Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + +Y++ R + L+D +D +L + +T L +L ++ + Sbjct: 284 DVPSYLLTHFRRDMPSLMSLLDALDRFSLEQKRAVTLPLLRAMLAAPEREE 334 >gi|237813670|ref|YP_002898121.1| DnaA regulatory inactivator Hda [Burkholderia pseudomallei MSHR346] gi|254191604|ref|ZP_04898107.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei Pasteur 52237] gi|254194910|ref|ZP_04901340.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei S13] gi|254299142|ref|ZP_04966592.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei 406e] gi|157808753|gb|EDO85923.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei 406e] gi|157939275|gb|EDO94945.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei Pasteur 52237] gi|169651659|gb|EDS84352.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei S13] gi|237505318|gb|ACQ97636.1| DnaA regulatory inactivator Hda [Burkholderia pseudomallei MSHR346] Length = 341 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 95/231 (41%), Gaps = 11/231 (4%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLID---SWPSWP--SRVVILVGPSGSGKSCL 80 QL + D+ + E RL + + + P R + G +GSG+S L Sbjct: 105 RQLTLDLGTPPPSTFDNFYSGTNAELVTRLRELDLALAAGPVADRTFYVWGEAGSGRSHL 164 Query: 81 ANIWSDKS--RSTRFSNIAKSLDSILIDTRKPV-LLEDIDLL-DFNDTQLFHIINSIHQY 136 + R+ + LD++ D R + ++D D L D LF++ N + + Sbjct: 165 LQALVHDTTYGHARYVSPQGGLDALAFDPRVSLYAVDDCDALNDAQQIALFNLFNEVRAH 224 Query: 137 D-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195 ++L++ P++ V DL +RL V ++ D+ V+ +R I + Sbjct: 225 PMTALVVAGPAAPLALDVR-EDLRTRLGWGLVFHLAPLTDEGKAAVLKHAAKERGIALAD 283 Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + +Y++ R + L+D +D +L + +T L +L ++ + Sbjct: 284 DVPSYLLTHFRRDMPSLMSLLDALDRFSLEQKRAVTLPLLRAMLAAPEREE 334 >gi|322833964|ref|YP_004213991.1| DnaA regulatory inactivator Hda [Rahnella sp. Y9602] gi|321169165|gb|ADW74864.1| DnaA regulatory inactivator Hda [Rahnella sp. Y9602] Length = 235 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 85/232 (36%), Gaps = 17/232 (7%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVH--SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80 N QL + ++ A++ + G G+S L Sbjct: 4 NTPAQLSLPLYLPDDETFASFYPGENPSLLSAIQSALHQEHGTY--IYFWSREGGGRSHL 61 Query: 81 ANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFN---DTQLFH 128 + + + + + K + ++ V +++I+ + + + +FH Sbjct: 62 LHAACAELSQRGEAVGYVPLDKRAYFVPEVLDGMEHLALVCIDNIEGIAGDDEWEAAVFH 121 Query: 129 IINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 + N I + L +T P + LPDL SRL + K+ D+ + + Sbjct: 122 LYNRILETGRTRLFITGDRPPRQLNLSLPDLASRLDWGQIYKLQPLSDEEKLQALQLRAK 181 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + + + ++++R++R + +D++D +++ +T E+L Sbjct: 182 LRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEIL 233 >gi|119944829|ref|YP_942509.1| chromosomal replication initiator, DnaA [Psychromonas ingrahamii 37] gi|119863433|gb|ABM02910.1| regulatory inactivation of DnaA Hda protein [Psychromonas ingrahamii 37] Length = 242 Score = 156 bits (394), Expect = 4e-36, Method: Composition-based stats. Identities = 37/194 (19%), Positives = 74/194 (38%), Gaps = 18/194 (9%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS---------ILIDTRKPVLLE 114 V+ + G SGSG+S L + + S L ++ V ++ Sbjct: 47 EPVLYMWGESGSGRSHLLHALCSEVDERGDSVAYIPLRHYQSMTLDIFENMEQVTLVCID 106 Query: 115 DIDLLDFNDT---QLFHIINS------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 DI+ + ++ LF N +SL+ A P G+ L DL SRL+ Sbjct: 107 DIEEIAGDEKWEKALFDFYNRWSDNKENRSSGASLVFCANHLPKQLGLKLNDLVSRLEWG 166 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 ++ +++ + + + + + +++ R+ R + +D++DN +L Sbjct: 167 ACYHLTPLNEEDKLGALQLRAQLKGMKLPVDVGRFLLNRLSRDMNTLLDTLDQLDNASLE 226 Query: 226 RGMGITRSLAAEVL 239 +T EVL Sbjct: 227 AKRKLTIPFVKEVL 240 >gi|317492835|ref|ZP_07951259.1| DnaA regulatory inactivator Hda [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918957|gb|EFV40292.1| DnaA regulatory inactivator Hda [Enterobacteriaceae bacterium 9_2_54FAA] Length = 235 Score = 156 bits (394), Expect = 4e-36, Method: Composition-based stats. Identities = 35/230 (15%), Positives = 81/230 (35%), Gaps = 13/230 (5%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 N QL + L + + G G+S L + Sbjct: 4 NTPAQLSLPLYLPDDETFASFYSGENSSLLAALQGALQQEHGTYIYFWSREGGGRSHLLH 63 Query: 83 IWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHII 130 + + + + K + ++ V +++I+ + + +F++ Sbjct: 64 AACAELSQRGEAVGYVPLDKRAYFVPEVLDGMEQLSLVCIDNIECIAGEEEWEMAIFNLY 123 Query: 131 NSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N I + LL+T P + LPDL SRL + K+ D+ + R Sbjct: 124 NRILETGRTRLLITGDRPPRQLNLRLPDLASRLDWGQIYKLQPLGDEDKLLALQLRSKLR 183 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + + + ++++R++R + +D++D +++ +T E+L Sbjct: 184 GFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEIL 233 >gi|303256718|ref|ZP_07342732.1| DnaA regulatory inactivator Hda [Burkholderiales bacterium 1_1_47] gi|302860209|gb|EFL83286.1| DnaA regulatory inactivator Hda [Burkholderiales bacterium 1_1_47] Length = 231 Score = 156 bits (394), Expect = 4e-36, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 85/222 (38%), Gaps = 16/222 (7%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSR-VVILVGPSGSGKSCLANIWS 85 QL F + + +V + +AV +I L G G GK+ L Sbjct: 15 QLPLDFFPEKQPTLSNFIVG-SNSEAVAVISELKEGRGPQFTYLWGYEGVGKTHLVRALG 73 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI-DLLDFNDTQLFHIINSIHQY-DSSLLMT 143 +S + R ++++ DL +LF + N++ ++ + L++T Sbjct: 74 KQSEGV----------PAFDENRTIYAVDNVQDLTPEQQQELFVLYNTVREHPGTHLVVT 123 Query: 144 ARTFPVSWGVC--LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 A P + DL SR V ++S D+ +VI++ + + + ++ +I Sbjct: 124 ADRSPKDFERQGFRKDLTSRFSWGVVFELSPLSDEQKRQVILEAASQTGLKVAPEVLNWI 183 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 R + L+ +D A+S +T L E L+ Q Sbjct: 184 ENNFPRDMHTMSNLLHSLDRYAMSAKRAVTIPLIKEWLERNQ 225 >gi|268589312|ref|ZP_06123533.1| DnaA regulatory inactivator Hda [Providencia rettgeri DSM 1131] gi|291315335|gb|EFE55788.1| DnaA regulatory inactivator Hda [Providencia rettgeri DSM 1131] Length = 204 Score = 156 bits (394), Expect = 4e-36, Method: Composition-based stats. Identities = 33/190 (17%), Positives = 76/190 (40%), Gaps = 13/190 (6%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLE 114 + G GKS L + + + LD ++ V ++ Sbjct: 14 GSYIYYWSREGGGKSHLLHAACAELSEQGIAVGYVPLDKRAYFVPEVLDGMEHLSLVCID 73 Query: 115 DIDLLDFNDT---QLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 +I + ++ +F++ N I + + LL+T P + LPDL SRL + K+ Sbjct: 74 NIQCIAGDEEWEMAIFNLYNRILEIGRTCLLITGDRPPRQIELKLPDLASRLDWGQIYKL 133 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 D+ + R + + + ++++R++R + +++K+D+ ++ + Sbjct: 134 HPLSDEDKIWALQLRARIRGFELPEDVCRFVLKRLDRKMGTLFDILNKLDHASIVAQRKL 193 Query: 231 TRSLAAEVLK 240 T ++LK Sbjct: 194 TIPFVKDILK 203 >gi|319944441|ref|ZP_08018715.1| DNA replication initiation protein A [Lautropia mirabilis ATCC 51599] gi|319742402|gb|EFV94815.1| DNA replication initiation protein A [Lautropia mirabilis ATCC 51599] Length = 219 Score = 156 bits (394), Expect = 4e-36, Method: Composition-based stats. Identities = 50/227 (22%), Positives = 89/227 (39%), Gaps = 27/227 (11%) Query: 27 QLFFSFPRCLGISRDDLLVHS---AIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCL 80 QL F D+ + + + L+ S R + GP GSGKS L Sbjct: 4 QLTLDFGPPPPPCFDNFVPGANLECLATLRHLVQSLKHGETPAQRFFYIWGPEGSGKSHL 63 Query: 81 ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD-FNDTQLFHIIN-SIHQYDS 138 A + ++++D+D LFH N I Q D Sbjct: 64 AGALTASQC------------------PNLMVVDDVDRYSKGRQRTLFHRFNALIDQPDH 105 Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198 +L++ P + LP+L SRL V + DD+ L + + +R + + + L+ Sbjct: 106 ALVVFGNQPPARLKL-LPELVSRLSWGMVFSLQPLDDNALADALEQSARERGLNLGQDLS 164 Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 Y+++ R + + ++D +D LA +R +T L + L+ +Q Sbjct: 165 TYLLRHTRRDMASLKTILDGLDRLAWARKKPLTLPLLKDYLQSQRQA 211 >gi|134280524|ref|ZP_01767235.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei 305] gi|134248531|gb|EBA48614.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei 305] Length = 341 Score = 156 bits (394), Expect = 4e-36, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 95/231 (41%), Gaps = 11/231 (4%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLID---SWPSWP--SRVVILVGPSGSGKSCL 80 QL + D+ + E RL + + + P R + G +GSG+S L Sbjct: 105 RQLTLDLGTPPPSTFDNFYSGTNAELVTRLRELDLALAAGPVADRTFYVWGEAGSGRSHL 164 Query: 81 ANIWSDKS--RSTRFSNIAKSLDSILIDTRKPV-LLEDIDLL-DFNDTQLFHIINSIHQY 136 + R+ + LD++ D R + ++D D L D LF++ N + + Sbjct: 165 LQALVHDTTYGHARYVSPQGGLDALAFDPRVSLYAVDDCDALNDAQQIALFNLFNEVRAH 224 Query: 137 D-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195 ++L++ P++ V DL +RL V ++ D+ V+ +R I + Sbjct: 225 PMTALVVAGPAAPLALDVR-EDLRTRLGWGLVFHLAPLTDEGKAAVLKHAAKERGIALAD 283 Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + +Y++ R + L+D +D +L + +T L +L ++ + Sbjct: 284 DVPSYLLTHFRRDMPSLMSLLDALDRFSLEQKRAVTLPLLRAMLAAPEREE 334 >gi|304413859|ref|ZP_07395276.1| ATPase involved in DNA replication initiation [Candidatus Regiella insecticola LSR1] gi|304283579|gb|EFL91974.1| ATPase involved in DNA replication initiation [Candidatus Regiella insecticola LSR1] Length = 254 Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 39/231 (16%), Positives = 86/231 (37%), Gaps = 15/231 (6%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW-PSWPSRVVILVGPSGSGKSCLA 81 N QL + + I S + G G+S L Sbjct: 23 NSPAQLSLPLYLPDDETFASFYPGE-NASVLAAIQSVIHHSHGSYIYFWSGEGGGRSHLL 81 Query: 82 NI----WSDKSRSTRFSNIAKS--LDSILIDTRK---PVLLEDIDLLDF---NDTQLFHI 129 + +S + + + + K ++D + V +++I+ + + +F++ Sbjct: 82 HAACTEFSQRGEAVGYVPLEKRAYFVEEVLDGMEQLALVCIDNIECVAGIPQWEMAIFNL 141 Query: 130 INSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N I + LL+T P + LPDL SRL + K+ DD + + Sbjct: 142 YNRIQETGHTRLLITGDRPPRQLNLHLPDLASRLDWGQIYKLQPLSDDEKLQALQLRAKL 201 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + + + ++++R++R + +D++D +++ +T E+L Sbjct: 202 RAFELPEDVGRFMLKRLDRKMRTLFMTLDQLDRASITAQRKLTIPFVKEIL 252 >gi|85711719|ref|ZP_01042776.1| ATPase involved in DNA replication initiation [Idiomarina baltica OS145] gi|85694579|gb|EAQ32520.1| ATPase involved in DNA replication initiation [Idiomarina baltica OS145] Length = 242 Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 54/243 (22%), Positives = 102/243 (41%), Gaps = 24/243 (9%) Query: 19 DQPKNKEEQLFFS--FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP------SRVVILV 70 K + +QL + P + + + VR + + P R+ +L Sbjct: 2 TAGKQQPQQLTLAVQLPDDENFTT---YLEQQNDNVVRWLKQIATKPLSETQGERLTLLS 58 Query: 71 GPSGSGKSCLANIWSDKSRST------RFSNIAKSLDSILIDTRKP---VLLEDIDLLDF 121 GPSGSGKS L + + +++ +S ++ + L+DID + Sbjct: 59 GPSGSGKSHLLHSIVSLAGQHTQVMYLPLADLKESNAEQVLAGLDAFNIICLDDIDTVLK 118 Query: 122 NDT---QLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 + T +LF +IN+I + L+MTA V L DL SRL+ AT ++S +DD Sbjct: 119 DPTWCYELFKLINTITDAEHCRLMMTAHASASQLSVELADLRSRLQWATAFQLSPLNDDG 178 Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237 + R + + +A +++ R+ R + +D++D +++ +T + Sbjct: 179 KASALTLRAQWRGLQLPHDVAIFMLHRLGRDMAGLLAHLDQLDKASIAHQRKLTIPFVKQ 238 Query: 238 VLK 240 VL Sbjct: 239 VLA 241 >gi|113461486|ref|YP_719555.1| DNA replication initiation factor [Haemophilus somnus 129PT] gi|112823529|gb|ABI25618.1| regulatory inactivation of DnaA Hda protein [Haemophilus somnus 129PT] Length = 231 Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 39/190 (20%), Positives = 84/190 (44%), Gaps = 13/190 (6%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI---------LIDTRKPVLLE 114 + G +GK+ L S+ +++ + I L ++ ++ V L+ Sbjct: 41 QPFFYIFGGKSTGKTHLLKACSNYFLASQRNAIYIPLSKAQYFSPEVLENLEQQELVCLD 100 Query: 115 DIDLLDFN---DTQLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKI 170 D + N + +F ++N I + S+LL+ +A PV+ + LPDL SRL + ++ Sbjct: 101 DFHAIIGNHEWELAIFDLMNRIKESGSTLLLISANQSPVNLNISLPDLASRLSWGEIYQL 160 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 + ++ +VI + R I + A ++++R++R + + +D +L + Sbjct: 161 NPLNEQQKVEVIKRNAHQRGIELPDDTANFLLKRLDRDIKSLFDTLTLLDKASLQAQRKL 220 Query: 231 TRSLAAEVLK 240 T E+L Sbjct: 221 TIPFVKEILN 230 >gi|160872450|ref|ZP_02062582.1| DnaA regulatory inactivator Hda [Rickettsiella grylli] gi|159121249|gb|EDP46587.1| DnaA regulatory inactivator Hda [Rickettsiella grylli] Length = 231 Score = 155 bits (393), Expect = 5e-36, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 86/233 (36%), Gaps = 21/233 (9%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV----VILVGPSGSGKSCL 80 QL S ++ E L+D + R + + G G+G + L Sbjct: 2 STQLILPIQPPDAHSFENFYRGQ-NEV---LLDCLQQFSLRRGESYIYIWGHPGAGCTHL 57 Query: 81 ANIWSDKSRSTRFSNIAKSLDSI----------LIDTRKPVLLEDIDLL---DFNDTQLF 127 ++ FS L ++ +++ V ++D++ + + LF Sbjct: 58 LQACCHTAQQYGFSVAYLPLSTLKKNNSSEILRGLESVDMVCIDDLESVVNESSWEESLF 117 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N + + LL+ A+ P LPDL SRL + + ++ ++ + Sbjct: 118 HFYNRLQEQSRYLLIAAKHNPHQLNFSLPDLISRLSSGILFQVHALNEAERLIALQARAR 177 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 R + + +++ +++ R+ R + ++D L +T L +LK Sbjct: 178 LRGLELSEEVGQFLLFRLPRDSQALFSALMQLDKATLRLKRKLTIPLVKTILK 230 >gi|238752069|ref|ZP_04613553.1| DnaA-homolog protein hda [Yersinia rohdei ATCC 43380] gi|238709769|gb|EEQ02003.1| DnaA-homolog protein hda [Yersinia rohdei ATCC 43380] Length = 239 Score = 155 bits (393), Expect = 5e-36, Method: Composition-based stats. Identities = 36/232 (15%), Positives = 85/232 (36%), Gaps = 17/232 (7%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVH--SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80 N QL + ++ A++ + G G+S L Sbjct: 8 NTPAQLSLPLYLPDDETFASFYPGENPSLLAAIQSAVHQSH--GSYIYFWSREGGGRSHL 65 Query: 81 ANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFH 128 + K + + + K + ++ V +++I+ + + +F+ Sbjct: 66 LHAACAELSQKGEAVGYVPLDKRAYFVPEVLDGMEQLALVCIDNIECIAGEEQWEMAMFN 125 Query: 129 IINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 + N I + LL+T P + LPDL SRL + K+ DD + + Sbjct: 126 LYNRIVETGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDDEKLQALQLRAK 185 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + + + ++++R++R + +D++D +++ +T ++L Sbjct: 186 LRGFELPEDVGRFLLKRLDREMRTLFTTLDQLDRASITAQRKLTIPFVKDIL 237 >gi|242238513|ref|YP_002986694.1| DNA replication initiation factor [Dickeya dadantii Ech703] gi|242130570|gb|ACS84872.1| DnaA regulatory inactivator Hda [Dickeya dadantii Ech703] Length = 235 Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats. Identities = 34/231 (14%), Positives = 85/231 (36%), Gaps = 15/231 (6%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP-SRVVILVGPSGSGKSCLA 81 N QL + D + I + + G G+S L Sbjct: 4 NTPAQLSLPLYLPDDETFDSFYPGE-NTSLLAAIHHALNQTHGSYLYFWSRQGGGRSHLL 62 Query: 82 NIWSDK----SRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDTQ---LFHI 129 + + + + + K + ++ V +++I+ + ++ +F++ Sbjct: 63 HAACAECSRTGEAVGYVPLDKRAYFVPEVLDGMEQLALVCIDNIESIAGDEQWELSMFNL 122 Query: 130 INSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N I + LL+T P + L DL SRL + ++ D+ + + Sbjct: 123 YNRIQESGRTRLLITGDRPPRQLNLHLADLASRLDWGQIYRLQPLSDEEKGEALQLRARL 182 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + + ++ ++++R++R + +D++D +++ +T E+L Sbjct: 183 RGFELPEDVSRFLLKRLDREMRTLFTTLDQLDRASITAQRKLTIPFVKEIL 233 >gi|300717926|ref|YP_003742729.1| DnaA-homolog protein [Erwinia billingiae Eb661] gi|299063762|emb|CAX60882.1| DnaA-homolog protein [Erwinia billingiae Eb661] Length = 235 Score = 154 bits (391), Expect = 8e-36, Method: Composition-based stats. Identities = 36/230 (15%), Positives = 80/230 (34%), Gaps = 13/230 (5%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 N QL + L + G G+S L + Sbjct: 4 NTPAQLSLPLYLPDDETFASFWPGENPSLIAALQSALQQEHGSYFYFWSREGGGRSHLLH 63 Query: 83 IWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFNDT---QLFHII 130 + + + LD ++ + +++I+ + ++ +F + Sbjct: 64 AACAELSARGEAVGYVPLDKRTWFVPEVLDGMEQLPLICIDNIECIAGDEPWEMAIFDLY 123 Query: 131 NSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N I + LL+TA P + L DL SRL + ++ D+ + + R Sbjct: 124 NRILETGRTRLLITADRPPRQLNLKLADLASRLDWGQIYRLQPLSDEDKLQALQLRARLR 183 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + + + ++++R++R + + +DK+D ++S +T E L Sbjct: 184 GFELPEDVGRFLLKRLDREMRTLFETLDKLDRASISAQRKLTIPFVKEAL 233 >gi|271499675|ref|YP_003332700.1| DnaA regulatory inactivator Hda [Dickeya dadantii Ech586] gi|270343230|gb|ACZ75995.1| DnaA regulatory inactivator Hda [Dickeya dadantii Ech586] Length = 235 Score = 154 bits (391), Expect = 8e-36, Method: Composition-based stats. Identities = 34/230 (14%), Positives = 85/230 (36%), Gaps = 13/230 (5%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 N QL + + + + G G+S L + Sbjct: 4 NTPAQLSLPLYLPDDETFASFYPGENTSLLAAIHTTLEQEHGSYIYFWSREGGGRSHLLH 63 Query: 83 IWSDK----SRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHII 130 + R+ + + K + ++ V +++I+ + ++ LF++ Sbjct: 64 AACAELSRLGRAVGYVPLDKRAYFVPEVLDGMEQLALVCIDNIEAIAGDEAWEMALFNLY 123 Query: 131 NSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N I + LL+T P + L DL SRL + ++ D+ + + R Sbjct: 124 NRIQEGGRTRLLITGDRPPRQINLQLADLASRLDWGQIYRLQPLSDEEKGEALQLRARLR 183 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + + ++ ++++R++R + +D++D+ +++ +T E+L Sbjct: 184 GFELPEDVSRFLLKRLDREMRTLFMTLDQLDHASITAQRKLTIPFVKEIL 233 >gi|170691341|ref|ZP_02882506.1| DnaA regulatory inactivator Hda [Burkholderia graminis C4D1M] gi|170143546|gb|EDT11709.1| DnaA regulatory inactivator Hda [Burkholderia graminis C4D1M] Length = 247 Score = 154 bits (391), Expect = 8e-36, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 88/228 (38%), Gaps = 9/228 (3%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLID---SWPSWP--SRVVILVGPSGSGKSCL 80 QL + D+ + E RL + + + P R + G +GSG++ L Sbjct: 3 RQLTLDLGTPPPSTFDNFFAGANAELVTRLRELDSALAAGPVADRTFYIWGEAGSGRTHL 62 Query: 81 ANIWSDKS--RSTRFSNIAKSLDSILIDTRKPV-LLEDIDLL-DFNDTQLFHIINSIHQY 136 ++ RF+ SL + D R + ++D D L +F++ N + + Sbjct: 63 LQALVHEAPRGHARFAGPQSSLAAFSFDPRVALYAIDDCDGLSAAQQVAVFNLFNEVRAH 122 Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196 +S L+ P DL +RL V ++ D+ V+ +R I + Sbjct: 123 PTSALVATGNAPPIGMTVREDLRTRLGWGLVFHLAPLPDEGKAAVLKHAARERGIMLADD 182 Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 + AY++ R + L+D +D +L + +T L +L Q Sbjct: 183 VPAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRTMLASPGQ 230 >gi|256822898|ref|YP_003146861.1| DnaA regulatory inactivator Hda [Kangiella koreensis DSM 16069] gi|256796437|gb|ACV27093.1| DnaA regulatory inactivator Hda [Kangiella koreensis DSM 16069] Length = 229 Score = 154 bits (391), Expect = 8e-36, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 95/227 (41%), Gaps = 14/227 (6%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA---- 81 +QL + + +V + ++ +++ S + + G G+S L Sbjct: 2 QQLPLDIELHSDATFANFMVGE-NQLLLQKLEAICQGESDFIYIYSEQGHGRSHLLQALT 60 Query: 82 NIWSDKSRSTRFSNIAKSLDSIL------IDTRKPVLLEDIDLLDFN---DTQLFHIINS 132 + +S+++ + + ++ + V L+ I+ + + T +F++ N Sbjct: 61 HAYSEQNPDKLIAYLPLENSMLVPQMLDGLVAFDCVSLDGIEKVIADKEWQTAIFNLYNQ 120 Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 + + S L+T P + L DL SRL A + I +D+ ++ + ++ + Sbjct: 121 LKEQGKSFLITGLNAPSQLALELKDLKSRLSAMFIYNIKPLNDEEKLILLQRKAEEKGLE 180 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + ++A Y++ R +R L ++DK+D +L +T EVL Sbjct: 181 LSNEVAHYLLARQQRDLPTLLGILDKLDQASLQAKRKLTIPFIKEVL 227 >gi|295675601|ref|YP_003604125.1| DnaA regulatory inactivator Hda [Burkholderia sp. CCGE1002] gi|295435444|gb|ADG14614.1| DnaA regulatory inactivator Hda [Burkholderia sp. CCGE1002] Length = 250 Score = 154 bits (391), Expect = 8e-36, Method: Composition-based stats. Identities = 48/230 (20%), Positives = 88/230 (38%), Gaps = 11/230 (4%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLI----DSWPSWP--SRVVILVGPSGSGKSC 79 QL + D+ A + V + D+ S P R + G +GSG++ Sbjct: 3 RQLTLDLGTPPPSTFDNFFAG-ANAELVTRLRELDDALASGPVADRTFYIWGEAGSGRTH 61 Query: 80 LANIWSDKS--RSTRFSNIAKSLDSILIDTRKPV-LLEDIDLL-DFNDTQLFHIINSIHQ 135 L ++ RF+ SL + D R + ++D D L +F++ N + Sbjct: 62 LLQALVHEAPPGHARFAGPQSSLAAFSFDPRVALYAIDDCDALSAAQQIAVFNLFNEVRA 121 Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195 + +S L+ A DL +RL V ++ DD V+ + +R I + Sbjct: 122 HPTSALVAAGNAAPIGMTVREDLRTRLGWGLVFHLAPLPDDAKAAVLKRAARERGIMLAD 181 Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 + AY++ R + L+D +D +L + +T L +L Sbjct: 182 DVPAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRTMLASPDPA 231 >gi|183599403|ref|ZP_02960896.1| hypothetical protein PROSTU_02876 [Providencia stuartii ATCC 25827] gi|188021645|gb|EDU59685.1| hypothetical protein PROSTU_02876 [Providencia stuartii ATCC 25827] Length = 253 Score = 154 bits (391), Expect = 8e-36, Method: Composition-based stats. Identities = 37/232 (15%), Positives = 84/232 (36%), Gaps = 15/232 (6%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP-SRVVILVGPSGSGKSCLA 81 N QL + E + I + + G GKS L Sbjct: 22 NTPSQLSLPLYLPDDETFASFYAGE-NEALLSAIKLAINQSHGSYIYYWSREGGGKSHLL 80 Query: 82 NIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFHI 129 + + + LD ++ V +++I + + + +F++ Sbjct: 81 HAACAELSEQDMAVGYVPLDKRAYFVPEVLDGMEHLSLVCIDNIQCIAGDPEWEMAVFNL 140 Query: 130 INSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N I + + LL+T P + LPDL SRL + K+ D+ + Sbjct: 141 YNRILEIGRTCLLITGDRPPRQIDLSLPDLASRLDWGQIYKLHPLSDEDKICALQLRARM 200 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 R + + + ++++R++R + +++K+D+ ++ +T ++L+ Sbjct: 201 RGFELPEDVCRFVLKRLDRKMGTLFDILNKLDHASIVAQRKLTIPFVKDILQ 252 >gi|134095803|ref|YP_001100878.1| putative regulator protein [Herminiimonas arsenicoxydans] gi|133739706|emb|CAL62757.1| Conserved hypothetical protein, putative DNA replication initiation-like ATPase [Herminiimonas arsenicoxydans] Length = 227 Score = 154 bits (391), Expect = 8e-36, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 75/225 (33%), Gaps = 8/225 (3%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW-----PSRVVILVGPSGSGKSCL 80 QL P + +V A + + L+ R V L G +G+GK+ L Sbjct: 2 RQLLLDLPAEKPQTLTSFVVG-ANAELIHLLQRLAQGQPGGLDERFVYLWGGAGAGKTHL 60 Query: 81 ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN-DTQLFHIINSIHQYDSS 139 + + A + LL+D L F + N + + Sbjct: 61 LRALASADTTLYIPGDAGADAFAYQPATTLYLLDDSHKLSPEAQIAAFALFNQVREQGGC 120 Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199 LL P + V DL +R + ++ D+ + R + + + Sbjct: 121 LLAAGNAAPATLTVR-EDLRTRFGWGLIYQVHGLSDEEKIAALTHAAEARGLMLSPGVLP 179 Query: 200 YIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 Y++ R + ++D +D +L IT L E+L+ + Sbjct: 180 YLLSHFARDMRSLSAMLDALDEYSLETKRPITLPLLRELLQRENE 224 >gi|170718408|ref|YP_001783630.1| DNA replication initiation factor [Haemophilus somnus 2336] gi|168826537|gb|ACA31908.1| Chromosomal replication initiator DnaA [Haemophilus somnus 2336] Length = 231 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 39/190 (20%), Positives = 84/190 (44%), Gaps = 13/190 (6%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI---------LIDTRKPVLLE 114 + G +GK+ L S+ +++ + I L ++ ++ V L+ Sbjct: 41 QPFFYIFGGKSTGKTHLLKACSNYFLASQRNAIYIPLSKAQYFSPEVLENLEQQELVCLD 100 Query: 115 DIDLLDFN---DTQLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKI 170 D + N + +F ++N I + S+LL+ +A PV+ + LPDL SRL + ++ Sbjct: 101 DFHAIIGNHEWELAIFDLMNRIKESGSTLLLISANQSPVNLNISLPDLASRLSWGEIYQL 160 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 + ++ +VI + R I + A ++++R++R + + +D +L + Sbjct: 161 NPLNEQQKVEVIKRNAHQRGIELPDDTANFLLKRLDRDIKSLFDTLTLLDKASLQAQRKL 220 Query: 231 TRSLAAEVLK 240 T E+L Sbjct: 221 TIPFVKEILN 230 >gi|319786687|ref|YP_004146162.1| DnaA regulatory inactivator Hda [Pseudoxanthomonas suwonensis 11-1] gi|317465199|gb|ADV26931.1| DnaA regulatory inactivator Hda [Pseudoxanthomonas suwonensis 11-1] Length = 237 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 86/226 (38%), Gaps = 14/226 (6%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS-RVVILVGPSGSGKSCLANIWS 85 QL + + + E A+ + P + L GP+GSGK+ L Sbjct: 12 QLPLALRYPPEQRLESYIGAP--EGALGQLRGLALNPGVDWIYLEGPAGSGKTHLGLGVC 69 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKP--------VLLEDIDLLDFN---DTQLFHIINSIH 134 ++ L + R+ V L+ ++ + + + LF N + Sbjct: 70 AEADGAGRRAAYLPLRAARGRLREALEAQEADVVALDGLEAIAGDRDDEVALFDFHNRMR 129 Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194 +S+L A P + + LPDL SRL T + + DD+ V+ R + ++ Sbjct: 130 AAGASVLYLATAAPQALPLVLPDLRSRLGQCTRIALHPLDDEGRRAVLRDRARRRGLVLE 189 Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + +++ R R + L++++D +L+ +T +L Sbjct: 190 EAAIDWLLTRTGRDMGRLLGLLERIDRASLAAQRRVTVPFLRGLLD 235 >gi|92114232|ref|YP_574160.1| regulatory inactivation of DnaA Hda protein [Chromohalobacter salexigens DSM 3043] gi|91797322|gb|ABE59461.1| regulatory inactivation of DnaA Hda protein [Chromohalobacter salexigens DSM 3043] Length = 232 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 39/188 (20%), Positives = 70/188 (37%), Gaps = 12/188 (6%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI---------LIDTRKPVLLE 114 + L G GSG+S L ++ + L + ++ V ++ Sbjct: 43 EPFLFLWGALGSGRSHLLQAACHEAGDRGDRALYLPLHDLGHFPPHMLEDLERLDLVAID 102 Query: 115 DIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 D+ + + LFH N + D L++ A P LPDL SRL ++ Sbjct: 103 DLSAVLGRKRWEEGLFHFFNRMRDADKRLVIAADAAPRQLSTVLPDLASRLTWGVTFHVA 162 Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231 DD + + R + + ++A YI+ R R L + ++D +LS +T Sbjct: 163 PLDDAGRFEALQLRARVRGMQLPDEVARYILHRGPRQLPALFDALARLDRASLSAQRKLT 222 Query: 232 RSLAAEVL 239 + L Sbjct: 223 IPFVKQAL 230 >gi|308048975|ref|YP_003912541.1| regulatory inactivation of DnaA Hda protein [Ferrimonas balearica DSM 9799] gi|307631165|gb|ADN75467.1| regulatory inactivation of DnaA Hda protein [Ferrimonas balearica DSM 9799] Length = 235 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 44/234 (18%), Positives = 89/234 (38%), Gaps = 19/234 (8%) Query: 23 NKEEQLFFS--FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP-SRVVILVGPSGSGKSC 79 QL P + +Q + + + V L G SG++ Sbjct: 4 RAPTQLSLPVHLPDDETFRS---YYPAGNQQLIDSLRQAAAGEGETVTYLWGSGKSGRTH 60 Query: 80 LANIWS------DKSRSTRFSNIAKSLDSILIDTRK---PVLLEDIDLLD---FNDTQLF 127 L + +S I S+ ++D + V L+DID + + LF Sbjct: 61 LLHATCVYASELGRSTFYLPLGIHASMSPAILDGLEDLSLVCLDDIDEVCRHPIWEEALF 120 Query: 128 HIINSIHQYD-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 ++ N + + L+++AR G LPDL SRL ++ DD + + Sbjct: 121 NLYNRVREKGTCRLVVSARAPANQAGFLLPDLVSRLNWGIHYQLHPLSDDAKLAALQRRA 180 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 R + +++++ +++ R+ R L +++D++D ++ +T E L Sbjct: 181 KMRGLDLEEEVGRFLMTRLARDLRTLFEVLDRLDKASMVAQRRLTIPFVKETLH 234 >gi|269468308|gb|EEZ79987.1| DnaA family protein [uncultured SUP05 cluster bacterium] Length = 224 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 58/223 (26%), Positives = 98/223 (43%), Gaps = 13/223 (5%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLID--SWPSWPSRVVILVGPSGSGKSCLAN-- 82 QL F + D+ V +Q + I S PS VV + G SG++ L Sbjct: 3 QLGLPFSLDSKMLLDNF-VGKKNQQILDFISQLSTQKAPS-VVYVYGGKSSGRTHLLQGC 60 Query: 83 IWSDKSR--STRFSNIAKSLDSILIDTRKP---VLLEDIDLLDFNDTQ-LFHIINSIHQY 136 ++ + + + L ++D + V L++++ L+ N Q LF + N Q Sbjct: 61 AFAALKEKLEVTYIDFNQDLPDGVMDNLESLDWVCLDNVNCLNENQQQELFDLYNRSVQT 120 Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196 L+M+ P + L DL +RL AT+ + DDD ++VI +R I I+ K Sbjct: 121 QVKLIMSGDDLPTELNL-LKDLKTRLSLATIFHLESLDDDSKKEVIQSKMKNRNIAIENK 179 Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + Y+ + R+L K +D +D +L + IT L +VL Sbjct: 180 VYDYLFKYYSRNLTDLLKAIDCLDEASLQQKNNITIPLIKQVL 222 >gi|307728542|ref|YP_003905766.1| DnaA regulatory inactivator Hda [Burkholderia sp. CCGE1003] gi|307583077|gb|ADN56475.1| DnaA regulatory inactivator Hda [Burkholderia sp. CCGE1003] Length = 247 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 89/228 (39%), Gaps = 9/228 (3%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLID---SWPSWP--SRVVILVGPSGSGKSCL 80 QL + D+ + E RL + + + P R + G +GSG++ L Sbjct: 3 RQLTLDLGTPPPSTFDNFFAGANAELVTRLRELDSALAAGPLADRTFYVWGEAGSGRTHL 62 Query: 81 ANIWSDKS--RSTRFSNIAKSLDSILIDTRKPV-LLEDIDLL-DFNDTQLFHIINSIHQY 136 ++ RF+ SL + D R + ++D D L +F++ N + + Sbjct: 63 LQALVHEAPPGHARFAGPQSSLAAFGFDPRVALYAIDDCDALSAAQQIAVFNLFNEVRAH 122 Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196 +S L+ P DL +RL V ++ D+ V+ + +R I + Sbjct: 123 PTSALVATGNAPPIGMTVREDLRTRLGWGLVFHLAPLPDEAKAAVLKRAARERGIMLADD 182 Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 + AY++ R + L+D +D +L + +T L +L Q Sbjct: 183 VPAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRTMLASPAQ 230 >gi|289207741|ref|YP_003459807.1| DnaA regulatory inactivator Hda [Thioalkalivibrio sp. K90mix] gi|288943372|gb|ADC71071.1| DnaA regulatory inactivator Hda [Thioalkalivibrio sp. K90mix] Length = 243 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 51/234 (21%), Positives = 89/234 (38%), Gaps = 17/234 (7%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP---SRVVILVGPSGSGKSCLA 81 E QL A + + ++L GPSGSGK+ L Sbjct: 10 ERQLPLDLRLRDASRFSGFY-ARGNALARDAVQALSVGTGIQEPQILLHGPSGSGKTHLL 68 Query: 82 NIWSDKSRSTRFSNIAKSLDSIL----------IDTRKPVLLEDIDLLDFN---DTQLFH 128 + L + ++ V L+D++ + D LF Sbjct: 69 QAACYQGHERGDPVSYLPLGEVAEAPPMAVLDGLERSCLVALDDLEAVVGRGDWDEALFG 128 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++N + +L+ A P V LPDL SRL V ++ PDD ++++ + A Sbjct: 129 LVNRLRDAGCRVLLAAAAPPEGLPVRLPDLASRLAWGPVFRMQRPDDVACKEILAQRAAL 188 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 R + + + +A Y+++R R L L+D++D AL++ +T E L Sbjct: 189 RGLELPEPVADYLLRRCSRDLSTLLALLDRLDLAALAQQRRLTIPFVREQLARM 242 >gi|260598871|ref|YP_003211442.1| DNA replication initiation factor [Cronobacter turicensis z3032] gi|260218048|emb|CBA32767.1| DnaA-homolog protein hda [Cronobacter turicensis z3032] Length = 233 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 36/233 (15%), Positives = 89/233 (38%), Gaps = 19/233 (8%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVH--SAIEQAVR-LIDSWPSWPSRVVILVGPSGSGKSC 79 N QL + ++ A++ ++ S + G G+S Sbjct: 2 NTPAQLSLPLWLPDDETFASFWPGDNPSLLAALQTMLRHDR---SGYIYFWSREGGGRSH 58 Query: 80 LANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLF 127 L + + + + + K + ++ V +++I+ + ++ +F Sbjct: 59 LLHAACAELSQRGDAVGYVPLDKRTWFVPEVLEGMEQLSLVCIDNIECIAGDELWEMAIF 118 Query: 128 HIINSIHQYD-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 ++ N I + + LL+T P + LPDL SRL + ++ DD + + Sbjct: 119 NLYNRILESGNTRLLITGDRPPRQLNLKLPDLASRLDWGQIYRLQPLSDDDKLQALQLRA 178 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + + + ++++R++R + +D++D ++S +T + L Sbjct: 179 RMRGFELPEDVGRFLLKRLDREMRTLFLTLDQLDRASISAQRKLTIPFVKDTL 231 >gi|194364750|ref|YP_002027360.1| hypothetical protein Smal_0972 [Stenotrophomonas maltophilia R551-3] gi|194347554|gb|ACF50677.1| DnaA regulatory inactivator Hda [Stenotrophomonas maltophilia R551-3] Length = 235 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 50/230 (21%), Positives = 89/230 (38%), Gaps = 19/230 (8%) Query: 27 QLFFSFPRCLGISRDDLLVHS--AIEQAVRL-IDSWPSWPSRVVILVGPSGSGKSCLANI 83 QL + + + A+ Q + + + W V L G +G+GK+ A Sbjct: 5 QLPLALHYPRDQRLETFIGAPDGALAQLRAIAVGASHDW----VYLEGAAGTGKTHQALA 60 Query: 84 WSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDF---NDTQLFHIIN 131 + L S ++ R+ V L+ +D + ++ LF N Sbjct: 61 MCSSAEQAGRLPTYVPLASAAGRVRAALDGLEARELVALDGLDEIAGNREDEIALFDFHN 120 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 ++L TA+ P G+ LPDL SRL V + D++ V+ + R + Sbjct: 121 RARAAGVTVLYTAQKAPGELGLVLPDLRSRLGQCVRVLLQPLDEEGRAAVLRERALRRGL 180 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ID+ +++ R L L+D +D +L+ IT +VL+E Sbjct: 181 AIDEASIEWLLSHTGRELGGLITLLDWLDRESLAAKRRITVPFLRQVLEE 230 >gi|254180769|ref|ZP_04887367.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei 1655] gi|184211308|gb|EDU08351.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei 1655] Length = 332 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 95/231 (41%), Gaps = 11/231 (4%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLID---SWPSWP--SRVVILVGPSGSGKSCL 80 QL + D+ + E RL + + + P R + G +GSG+S L Sbjct: 96 RQLTLDLGTPPPSTFDNFYSGTNAELVTRLRELDLALAAGPVADRTFYVWGEAGSGRSHL 155 Query: 81 ANIWSDKS--RSTRFSNIAKSLDSILIDTRKPV-LLEDIDLL-DFNDTQLFHIINSIHQY 136 + R+ + LD++ D R + ++D D L D LF++ N + + Sbjct: 156 LQALVHDTTYGHARYVSPQGGLDALAFDPRVSLYAVDDCDALNDAQQIALFNLFNEVRAH 215 Query: 137 D-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195 ++L++ P++ V DL +RL V ++ D+ V+ +R I + Sbjct: 216 PMTALVVAGPAAPLALDVR-EDLRTRLGWGLVFHLAPLTDEGKAAVLKHAAKERGIALAD 274 Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + +Y++ R + L+D +D +L + +T L +L ++ + Sbjct: 275 DVPSYLLTHFRRDMPSLMSLLDALDRFSLEQKRAVTLPLLRAMLAAPEREE 325 >gi|254178931|ref|ZP_04885585.1| chromosomal replication initiator protein DnaA [Burkholderia mallei ATCC 10399] gi|254202586|ref|ZP_04908949.1| chromosomal replication initiator protein DnaA [Burkholderia mallei FMH] gi|254207924|ref|ZP_04914274.1| chromosomal replication initiator protein DnaA [Burkholderia mallei JHU] gi|147746833|gb|EDK53910.1| chromosomal replication initiator protein DnaA [Burkholderia mallei FMH] gi|147751818|gb|EDK58885.1| chromosomal replication initiator protein DnaA [Burkholderia mallei JHU] gi|160694845|gb|EDP84853.1| chromosomal replication initiator protein DnaA [Burkholderia mallei ATCC 10399] Length = 332 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 95/231 (41%), Gaps = 11/231 (4%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLID---SWPSWP--SRVVILVGPSGSGKSCL 80 QL + D+ + E RL + + + P R + G +GSG+S L Sbjct: 96 RQLTLDLGTPPPSTFDNFYSGTNAELVTRLRELDLALAAGPVADRTFYVWGEAGSGRSHL 155 Query: 81 ANIWSDKS--RSTRFSNIAKSLDSILIDTRKPV-LLEDIDLL-DFNDTQLFHIINSIHQY 136 + R+ + LD++ D R + ++D D L D LF++ N + + Sbjct: 156 LQALVHDTTYGHARYVSPQGGLDALAFDPRVSLYAVDDCDALNDAQQIALFNLFNEVRAH 215 Query: 137 D-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195 ++L++ P++ V DL +RL V ++ D+ V+ +R I + Sbjct: 216 PMTALVVAGPAAPLALDVR-EDLRTRLGWGLVFHLAPLTDEGKAAVLKHAAKERGIALAD 274 Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + +Y++ R + L+D +D +L + +T L +L ++ + Sbjct: 275 DVPSYLLTHFRRDMPSLMSLLDALDRFSLEQKRAVTLPLLRAMLAAPEREE 325 >gi|330999360|ref|ZP_08323077.1| DnaA regulatory inactivator Hda [Parasutterella excrementihominis YIT 11859] gi|329575218|gb|EGG56769.1| DnaA regulatory inactivator Hda [Parasutterella excrementihominis YIT 11859] Length = 236 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 84/222 (37%), Gaps = 16/222 (7%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSR-VVILVGPSGSGKSCLANIWS 85 QL F + + +V + +AV +I L G G GK+ L Sbjct: 20 QLPLDFFPEKQPTLSNFIVG-SNSEAVAVISELKEGRGPQFTYLWGYEGVGKTHLVRALG 78 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI-DLLDFNDTQLFHIINSIHQY-DSSLLMT 143 +S + R ++++ DL +LF + N++ ++ + L++T Sbjct: 79 KQSEGV----------PAFDENRTIYAVDNVQDLTPEQQQELFVLYNTVREHPGTHLVVT 128 Query: 144 ARTFPVSWGVC--LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 A P + DL SR V ++S D+ +VI++ + + + ++ +I Sbjct: 129 ADRSPKDFERQGFRKDLTSRFSWGVVFELSPLSDEQKRQVILEAASQTGLKVAPEVLNWI 188 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 R + L+ +D A+S +T L E + Q Sbjct: 189 ENNFPRDMHTMSNLLHSLDRYAMSAKRAVTIPLIKEWFERNQ 230 >gi|304398365|ref|ZP_07380239.1| DnaA regulatory inactivator Hda [Pantoea sp. aB] gi|304354231|gb|EFM18604.1| DnaA regulatory inactivator Hda [Pantoea sp. aB] Length = 270 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 83/232 (35%), Gaps = 17/232 (7%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVH--SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80 N QL + ++ A++ + + G G+S L Sbjct: 39 NTPAQLSLPLYLPDDETFSSFWPGENPSLIAALKGALNQQH--GSYLYFWSREGGGRSHL 96 Query: 81 ANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFH 128 + + + + LD ++ V +++I+ + + +F Sbjct: 97 LHAACAEMSARSEAVGYVPLDKRTWFVPDVLEGMEQLSLVCIDNIECIAGEPEWEMAIFD 156 Query: 129 IINSIHQYD-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 + N I + + L +T P + LPDL SRL + ++ D+ + + Sbjct: 157 LYNRILETGNTRLFITGDRPPRQLNLQLPDLASRLDWGQIYRLQPLSDEDKLQALQLRAG 216 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + + + ++++R++R + +D++D ++S +T E L Sbjct: 217 LRGFELPEDVGRFLLKRLDREMRTLFDTLDRLDRASISAQRKLTIPFVKETL 268 >gi|270264635|ref|ZP_06192900.1| DnaA family protein Hda [Serratia odorifera 4Rx13] gi|270041318|gb|EFA14417.1| DnaA family protein Hda [Serratia odorifera 4Rx13] Length = 203 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 30/189 (15%), Positives = 76/189 (40%), Gaps = 13/189 (6%) Query: 64 SRVVILVGPSGSGKSCLANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLE 114 + G G+S L + + + + + K + ++ V ++ Sbjct: 13 GSYIYFWSREGGGRSHLLHAACAELSQRGEAVGYVPLDKRAYFVPEVLDGMEQLALVCID 72 Query: 115 DIDLLDFNDT---QLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 +I+ + ++ +F++ N I + L +T P + LPDL SRL + K+ Sbjct: 73 NIECIAGDEEWEMAIFNLYNRILETGRTRLFITGDRPPRQLNLHLPDLASRLDWGQIYKL 132 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 D+ + + R + + + ++++R++R + +D++D +++ + Sbjct: 133 QPLSDEEKLQALQLRGKLRGFELPEDVGRFLLKRLDREMRTLFTTLDQLDRASITAQRKL 192 Query: 231 TRSLAAEVL 239 T E+L Sbjct: 193 TIPFVKEIL 201 >gi|76811961|ref|YP_334683.1| DnaA regulatory inactivator Hda [Burkholderia pseudomallei 1710b] gi|76581414|gb|ABA50889.1| conserved hypothetical protein [Burkholderia pseudomallei 1710b] Length = 332 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 95/231 (41%), Gaps = 11/231 (4%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLID---SWPSWP--SRVVILVGPSGSGKSCL 80 QL + D+ + E RL + + + P R + G +GSG+S L Sbjct: 96 RQLTLDLGTPPPSTFDNFYSGTNAELVTRLRELDLALAAGPVADRTFYVWGEAGSGRSHL 155 Query: 81 ANIWSDKS--RSTRFSNIAKSLDSILIDTRKPV-LLEDIDLL-DFNDTQLFHIINSIHQY 136 + R+ + LD++ D R + ++D D L D LF++ N + + Sbjct: 156 LQALVHDTTYGHARYVSPQGGLDALAFDPRVSLYAVDDCDALNDAQQIALFNLFNEVRAH 215 Query: 137 D-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195 ++L++ P++ V DL +RL V ++ D+ V+ +R I + Sbjct: 216 PMTALVVAGPAAPLALDVR-EDLRTRLGWGLVFHLAPLTDEGKAAVLKHAAKERGIALAD 274 Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + +Y++ R + L+D +D +L + +T L +L ++ + Sbjct: 275 DVPSYLLTHFRRDMPSLMSLLDALDRFSLEQKRAVTLPLLRAMLAAPEREE 325 >gi|254522116|ref|ZP_05134171.1| DnaA regulatory inactivator Hda [Stenotrophomonas sp. SKA14] gi|219719707|gb|EED38232.1| DnaA regulatory inactivator Hda [Stenotrophomonas sp. SKA14] Length = 235 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 50/230 (21%), Positives = 90/230 (39%), Gaps = 19/230 (8%) Query: 27 QLFFSFPRCLGISRDDLLVHS--AIEQAVRL-IDSWPSWPSRVVILVGPSGSGKSCLANI 83 QL + + + A+ Q + + + W V L G +G+GK+ A Sbjct: 5 QLPLALHYPRDQRLETFIGAPDGALAQLRAIAVGASHDW----VYLEGAAGTGKTHQALA 60 Query: 84 WSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDF---NDTQLFHIIN 131 + L S +++R+ V L+ +D + ++ LF N Sbjct: 61 MCSSAEQAGRLPTYVPLASAAGRVRAALDGLESRELVALDGLDEVAGSREDEIALFDFHN 120 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 ++L TA+ P G+ LPDL SRL V + D++ V+ + R + Sbjct: 121 RARAAGVTVLYTAQKAPGELGLLLPDLRSRLGQCVRVLLQPLDEEGRAAVLRERALRRGL 180 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ID+ +++ R L L+D +D +L+ IT +VL+E Sbjct: 181 AIDEAAIEWLLSHTGRELGGLITLLDWLDRESLAAKRRITVPFLRQVLEE 230 >gi|171057364|ref|YP_001789713.1| DnaA regulatory inactivator Hda [Leptothrix cholodnii SP-6] gi|170774809|gb|ACB32948.1| DnaA regulatory inactivator Hda [Leptothrix cholodnii SP-6] Length = 225 Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 87/226 (38%), Gaps = 12/226 (5%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQ---AVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 Q+ + D L A Q + P+ + L GP GSGK+ L Sbjct: 2 RQVPLALGPEPNWRLDTFLPG-ANAQWQQVCAALAQPQ--PATPLYLWGPPGSGKTHLLR 58 Query: 83 IW----SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN-DTQLFHIINSIHQYD 137 ++S+ + + D +LL+D D D F + Sbjct: 59 AAAALAQERSQLVVALDCSGVPPWEFDDHTGLLLLDDCDRYDTRRQQAAFALFVQATTLG 118 Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 +L R PV + DL +RL V ++ P +D + ++ + R I + + Sbjct: 119 VPVLAAGRLPPVDLPIR-DDLRTRLGWGLVYQLVPPGEDHVRALMRREADRRGIVLSDDV 177 Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 Y+++R R L +L+D++D AL+ +T L +VL E++ Sbjct: 178 IDYLLKRCARDLSHLMRLLDRLDQQALATKRAVTLPLVRKVLAESE 223 >gi|71898099|ref|ZP_00680285.1| ATPas [Xylella fastidiosa Ann-1] gi|71732073|gb|EAO34129.1| ATPas [Xylella fastidiosa Ann-1] Length = 233 Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 88/232 (37%), Gaps = 23/232 (9%) Query: 27 QLFFSFPRCLGISRDDLLVHSA-----IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 QL + + L + + V W + LVG SGSGK+ LA Sbjct: 5 QLPLALRYSSDQRFETYLHAPSGLIAQLRAVVDQCSR--DW----IYLVGASGSGKTHLA 58 Query: 82 NIWS------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF------NDTQLFHI 129 +S + +A ++ + +L +D L ++ LF Sbjct: 59 LALCAAAEQVGQSVAYLPLQVAVGRLRDALEALEGCVLVVLDGLQAIVGMREDEIALFDF 118 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N +LL TAR P G+ LPDL SR+ + + DD V+ + R Sbjct: 119 HNRARAAGITLLYTARAIPDGLGLTLPDLRSRVAQCIRIALPTLDDVGRASVLRERAQRR 178 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + +D+ +++ R +R L L++++D +L+ +T VL E Sbjct: 179 GLMLDEAAIEWLLSRGDRDLGSLVMLLERLDRESLATKRRVTIPFLRHVLAE 230 >gi|94498878|ref|ZP_01305416.1| hypothetical protein RED65_08829 [Oceanobacter sp. RED65] gi|94428510|gb|EAT13482.1| hypothetical protein RED65_08829 [Oceanobacter sp. RED65] Length = 232 Score = 152 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 37/230 (16%), Positives = 93/230 (40%), Gaps = 20/230 (8%) Query: 26 EQLFFSFPRCLGISRDDLLVHSA----IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 EQL + ++ + ++ + I + + + G SG G S L Sbjct: 5 EQLPLGVQLRDEATFENFYALQSQEVKLQAQLAAIGK----GEQSIFIYGESGCGTSHLL 60 Query: 82 NIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDF---NDTQLFHI 129 ++++ +++ L+ ++ ++ + L+++ + + +FH+ Sbjct: 61 QAACHEAQTHDLNSVYLPLEELVEYSPAVFESLENLPLIALDNMQAIAGLPAWEEAVFHL 120 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N + ++M A G+ L DL SRL V ++ ++ + +R Sbjct: 121 FNRVRDNGGHIIMAANDSIEGLGIKLADLKSRLHWGLVYELPELTEEDKMAALKLRAHNR 180 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + + +A Y+V++ME + + ++++D +LS +TR +V+ Sbjct: 181 GLELGDDVAKYVVRQMEGHMDKMFEALNQLDKASLSAKRKVTRPFVKDVM 230 >gi|261491981|ref|ZP_05988557.1| DNA replication initiation protein A [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495291|ref|ZP_05991743.1| DNA replication initiation protein A [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309056|gb|EEY10307.1| DNA replication initiation protein A [Mannheimia haemolytica serotype A2 str. OVINE] gi|261312352|gb|EEY13479.1| DNA replication initiation protein A [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 236 Score = 152 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 92/234 (39%), Gaps = 20/234 (8%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 QL + + D+ ++ L ++ + G GKS L S Sbjct: 1 MQLPLPIHQIDEDTFDNFYSQNSEVLLESLKRNFTDVQQPFFYIWGGKSCGKSHLLKAVS 60 Query: 86 D------KSRSTRFSNIAKSLDSILIDTRKP---VLLEDIDLLDFN---DTQLFHIINSI 133 + ++ S A +++D + + L+DI + + + +F++ N I Sbjct: 61 NHFLLNNQTSSYIPLTKANYFSPLVLDNAELLNVICLDDIQAIAGDAEWELAIFNLFNQI 120 Query: 134 HQYDSS--------LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 + LL++A P + LPDL SRL V +++ D+ +++ Sbjct: 121 REQQGLFNEGQKTLLLISADCPPHQLNIQLPDLRSRLTWGEVYQLNDLTDEQKCQILQLN 180 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + + + ++A +++++ L K++DK+D +L +T E+L Sbjct: 181 AHQKGVELSDEVAHFLLKKAGTDLEQLSKILDKLDKASLQAQRKLTIPFVKEIL 234 >gi|307130014|ref|YP_003882030.1| ATPase regulatory factor involved in DnaA inactivation [Dickeya dadantii 3937] gi|306527543|gb|ADM97473.1| ATPase regulatory factor involved in DnaA inactivation [Dickeya dadantii 3937] Length = 233 Score = 152 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 33/230 (14%), Positives = 84/230 (36%), Gaps = 13/230 (5%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 N QL + + + + G G+S L + Sbjct: 2 NTPAQLSLPLYLPDDETFASFYPGENTSLLAAIHTTLNQEHGSYIYFWSREGGGRSHLLH 61 Query: 83 IWSDK----SRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHII 130 + + + + K + ++ V +++I+ + ++ LF++ Sbjct: 62 AACAELSRLGSAVGYVPLDKRAYFVPEVLEGMEQLALVCIDNIESISGDEAWEMALFNLY 121 Query: 131 NSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N I + LL+T P + L DL SRL + ++ D+ + + R Sbjct: 122 NRIQEGGRTRLLITGDRPPRQINLQLADLASRLDWGQIYRLQPLSDEEKGEALQLRARLR 181 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + + ++ ++++R++R + +D++D+ +++ +T E+L Sbjct: 182 GFELPEDVSRFLLKRLDREMRTLFMTLDQLDHASITAQRKLTIPFVKEIL 231 >gi|209520580|ref|ZP_03269335.1| DnaA regulatory inactivator Hda [Burkholderia sp. H160] gi|209498973|gb|EDZ99073.1| DnaA regulatory inactivator Hda [Burkholderia sp. H160] Length = 250 Score = 152 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 88/229 (38%), Gaps = 9/229 (3%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLID---SWPSWP--SRVVILVGPSGSGKSCL 80 QL + D+ + E RL + + + P R + G +GSG++ L Sbjct: 3 RQLTLDLGTPPPSTFDNFFAGANAELVTRLRELDNALAAGPVADRTFYVWGEAGSGRTHL 62 Query: 81 ANIWSDKS--RSTRFSNIAKSLDSILIDTRKPV-LLEDIDLL-DFNDTQLFHIINSIHQY 136 ++ RF+ SL + D R + ++D D L +F++ N + + Sbjct: 63 LQALVHEAPPGHARFAGPQSSLAAFGFDPRVALYAIDDCDALSAAQQIAVFNLFNEVRAH 122 Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196 +S L+ A DL +RL V ++ DD V+ + +R I + Sbjct: 123 PTSALVAAGNAAPIGMTVREDLRTRLGWGLVFHLAPLPDDAKAAVLKRAARERGIMLADD 182 Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 + AY++ R + L+D +D +L + +T L +L Sbjct: 183 VPAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRTMLASPDPA 231 >gi|300723565|ref|YP_003712870.1| regulatory factor involved in inactivation of DnaA [Xenorhabdus nematophila ATCC 19061] gi|297630087|emb|CBJ90724.1| regulatory factor involved in inactivation of DnaA [Xenorhabdus nematophila ATCC 19061] Length = 221 Score = 152 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 33/190 (17%), Positives = 77/190 (40%), Gaps = 13/190 (6%) Query: 64 SRVVILVGPSGSGKSCLANIWS----DKSRSTRFSNIAKSLDSIL-----IDTRKPVLLE 114 + G GKS L + + + + + K + ++ V ++ Sbjct: 31 GSYIYFWSRDGGGKSHLLHAACTELSQQEEAVGYVPLDKRAYFVPEVLDGMEHLSLVCID 90 Query: 115 DIDLLDFNDT---QLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 +I+ + + +F++ N I + + LL+T P + LPDL SRL + K+ Sbjct: 91 NIECIAGDQEWEMAIFNLYNRIVEIGRTCLLITGDRPPRQINLTLPDLASRLDWGQIYKL 150 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 DD + R + + + ++++R++R + K +D++D ++ + Sbjct: 151 QPLSDDEKILALQLRAKLRGFELPEDVGRFVLKRLDREMQTLFKTLDELDRASIVAQRKL 210 Query: 231 TRSLAAEVLK 240 T ++L+ Sbjct: 211 TIPFVKDILE 220 >gi|317049103|ref|YP_004116751.1| DnaA regulatory inactivator Hda [Pantoea sp. At-9b] gi|316950720|gb|ADU70195.1| DnaA regulatory inactivator Hda [Pantoea sp. At-9b] Length = 235 Score = 152 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 83/234 (35%), Gaps = 21/234 (8%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVH--SAIEQAV--RLIDSWPSWPSRVVILVGPSGSGKS 78 N QL + ++ A+ L+ + G G+S Sbjct: 4 NTPAQLSLPLYLPDDETFASFWPGENPSLLAALQGALVQQ----HGSYLYFWSREGGGRS 59 Query: 79 CLANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQL 126 L + + + + LD ++ V +++I+ + + + Sbjct: 60 HLLHAACAEMSARGEAVGYVPLDKRTWFVPEVLEGMEHLALVCIDNIECIAGEAEWEMAI 119 Query: 127 FHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 F + N I + LL+T P + LPDL SRL + ++ DD + + Sbjct: 120 FDLYNRILEIGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYRLQPLSDDDKLQAMQLR 179 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + + + ++++R++R + +D++D ++S +T E L Sbjct: 180 AGIRGFELPEDVGRFLLKRLDREMRTLFDTLDRLDRASISAQRKLTIPFVKEAL 233 >gi|308187741|ref|YP_003931872.1| Chromosomal replication initiator protein dnaA [Pantoea vagans C9-1] gi|308058251|gb|ADO10423.1| Chromosomal replication initiator protein dnaA [Pantoea vagans C9-1] Length = 249 Score = 152 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 83/232 (35%), Gaps = 17/232 (7%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVH--SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80 N QL + ++ A++ + + G G+S L Sbjct: 18 NTPAQLSLPLYLPDDETFSSFWPGENPSLIAALKGALNQQH--GSYLYFWSREGGGRSHL 75 Query: 81 ANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFH 128 + + + + LD ++ V +++I+ + + +F Sbjct: 76 LHAACAEMSARSEAVGYVPLDKRTWFVPEVLEGMEQLSLVCIDNIECIAGEPEWEMAIFD 135 Query: 129 IINSIHQYD-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 + N I + + L +T P + LPDL SRL + ++ D+ + + Sbjct: 136 LYNRILETGNTRLFITGDRPPRQLNLQLPDLASRLDWGQIYRLQPLSDEDKLQALQLRAG 195 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + + + ++++R++R + +D++D ++S +T E L Sbjct: 196 LRGFELPEDVGRFLLKRLDREMRTLFDTLDRLDRASISAQRKLTIPFVKETL 247 >gi|190573155|ref|YP_001971000.1| hypothetical protein Smlt1129 [Stenotrophomonas maltophilia K279a] gi|190011077|emb|CAQ44686.1| conserved hypothetical protein [Stenotrophomonas maltophilia K279a] Length = 236 Score = 152 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 50/230 (21%), Positives = 90/230 (39%), Gaps = 19/230 (8%) Query: 27 QLFFSFPRCLGISRDDLLVHS--AIEQAVRL-IDSWPSWPSRVVILVGPSGSGKSCLANI 83 QL + + + A+ Q + + + W V L G +G+GK+ A Sbjct: 6 QLPLALHYPRDQRLETFIGAPDGALAQLRAIAVGASHDW----VYLEGAAGTGKTHQALA 61 Query: 84 WSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDF---NDTQLFHIIN 131 + L S ++ R+ V L+ +D + ++ LF N Sbjct: 62 MCSSAEQAGRLPTYVPLASAAGRVRAALDGLEARELVALDGLDEVAGNRDDEIALFDFHN 121 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 ++L TA+ P + G+ LPDL SRL V + D++ V+ + R + Sbjct: 122 RARAAGVTVLYTAQKAPEALGLVLPDLRSRLGQCVRVLLQPLDEEGRAAVLRERALRRGL 181 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ID+ +++ R L L+D +D +L+ IT +VL+E Sbjct: 182 AIDEASIEWLLSHTGRELGGLITLLDWLDRESLAAKRRITVPFLRQVLEE 231 >gi|293394971|ref|ZP_06639259.1| DnaA regulatory inactivator Hda [Serratia odorifera DSM 4582] gi|291422499|gb|EFE95740.1| DnaA regulatory inactivator Hda [Serratia odorifera DSM 4582] Length = 238 Score = 152 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 34/232 (14%), Positives = 84/232 (36%), Gaps = 17/232 (7%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVH--SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80 N QL + ++ A++ + + G G+S L Sbjct: 7 NTPAQLSLPLYLPDDETFASFYPGENPSLLAAIQ--SAVVQEHGSYIYFWSREGGGRSHL 64 Query: 81 ANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFH 128 + + + + + K + ++ V +++I+ + ++ +F+ Sbjct: 65 LHAACAELSQRGEAVGYVPLDKRAYFVPEVLDGMEQLALVCIDNIECIAGDEAWEMAIFN 124 Query: 129 IINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 + N I + L +T P + LPDL SRL + K+ D + Sbjct: 125 LYNRILETGRTRLFITGDRPPRQLNLQLPDLASRLDWGQIYKLQPLSDTEKLLALQLRAK 184 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + + + ++++R++R + +D++D +++ +T E+L Sbjct: 185 LRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEIL 236 >gi|28199440|ref|NP_779754.1| hypothetical protein PD1561 [Xylella fastidiosa Temecula1] gi|182682168|ref|YP_001830328.1| hypothetical protein XfasM23_1647 [Xylella fastidiosa M23] gi|28057555|gb|AAO29403.1| replication related protein [Xylella fastidiosa Temecula1] gi|182632278|gb|ACB93054.1| DnaA regulatory inactivator Hda [Xylella fastidiosa M23] gi|307578437|gb|ADN62406.1| hypothetical protein XFLM_02025 [Xylella fastidiosa subsp. fastidiosa GB514] Length = 233 Score = 152 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 53/230 (23%), Positives = 90/230 (39%), Gaps = 19/230 (8%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQA--VRLIDS-WPSWPSRVVILVGPSGSGKSCLANI 83 QL + + L + A L+D W + LVG SGSGK+ LA Sbjct: 5 QLPLALRYSSDQRFETYLHAPSGLIAQLRALVDQCSREW----IYLVGASGSGKTHLALA 60 Query: 84 WS------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF------NDTQLFHIIN 131 +S + +A ++ + +L +D L ++ LF N Sbjct: 61 LCAAAEQVGQSVAYLPLQVAVGRLRDALEALEGCVLVVLDGLQAIVGMREDEIALFDFHN 120 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 +LL TAR P G+ LPDL SR+ + + DD V+ + R + Sbjct: 121 RARAAGITLLYTARAIPDGLGLTLPDLRSRVAQCIRIALPTLDDVGRASVLRERAQRRGL 180 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 +D+ +++ R +R L L++++D +L+ +T VL E Sbjct: 181 MLDEAAIEWLLSRGDRDLGSLVMLLERLDRESLATKRRVTIPFLRHVLAE 230 >gi|290475625|ref|YP_003468514.1| regulatory factor involved in inactivation of DnaA [Xenorhabdus bovienii SS-2004] gi|289174947|emb|CBJ81748.1| regulatory factor involved in inactivation of DnaA [Xenorhabdus bovienii SS-2004] Length = 221 Score = 152 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 32/190 (16%), Positives = 77/190 (40%), Gaps = 13/190 (6%) Query: 64 SRVVILVGPSGSGKSCLANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLE 114 + G GKS L + + + + + K + ++ V ++ Sbjct: 31 GSYIYFWSRDGGGKSHLLHASCAELSQQGEAVGYVPLDKRAYFVPEVLDGMEHLSLVCID 90 Query: 115 DIDLLDFNDT---QLFHIINSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 +I+ + + +F++ N I + + LL+T P + LPDL SRL + K+ Sbjct: 91 NIECIAGDQEWEMAIFNLYNRIVEIGRTCLLITGDRPPRQINLTLPDLASRLDWGQIYKL 150 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 DD + + R + + + ++++R++R + + +D++D ++ + Sbjct: 151 QPLSDDEKIQALQLRAKLRGFELPEDVGRFVLKRLDREMQTLFRTLDELDRASIVAQRKL 210 Query: 231 TRSLAAEVLK 240 T ++L Sbjct: 211 TIPFVKDILD 220 >gi|15837192|ref|NP_297880.1| hypothetical protein XF0590 [Xylella fastidiosa 9a5c] gi|71274560|ref|ZP_00650848.1| ATPas [Xylella fastidiosa Dixon] gi|71901344|ref|ZP_00683439.1| ATPas [Xylella fastidiosa Ann-1] gi|170730815|ref|YP_001776248.1| hypothetical protein Xfasm12_1717 [Xylella fastidiosa M12] gi|9105454|gb|AAF83400.1|AE003904_21 conserved hypothetical protein [Xylella fastidiosa 9a5c] gi|71164292|gb|EAO14006.1| ATPas [Xylella fastidiosa Dixon] gi|71728888|gb|EAO31024.1| ATPas [Xylella fastidiosa Ann-1] gi|167965608|gb|ACA12618.1| chromosomal replication initiator protein DnaA [Xylella fastidiosa M12] Length = 233 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 52/232 (22%), Positives = 88/232 (37%), Gaps = 23/232 (9%) Query: 27 QLFFSFPRCLGISRDDLLVHSA-----IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 QL + + L + + V W + LVG SGSGK+ LA Sbjct: 5 QLPLALRYSSDQRFETYLHAPSGLIAQLRAVVDQCSR--DW----IYLVGASGSGKTHLA 58 Query: 82 NIWS------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF------NDTQLFHI 129 +S + +A ++ + LL +D L ++ LF Sbjct: 59 LALCAAAEQVGQSVAYLPLQVAVGRLRDALEALEGCLLVVLDGLQAIVGMREDEIALFDF 118 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N +LL TAR P G+ LPDL SR+ + + DD V+ + R Sbjct: 119 HNRARAAGITLLYTARAIPDGLGLTLPDLRSRVAQCIRIALPTLDDVGRASVLRERAQRR 178 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + +D+ +++ R +R L L++++D +L+ +T VL E Sbjct: 179 GLMLDEAAIEWLLSRGDRDLGSLVMLLERLDRESLATKRRVTIPFLRHVLAE 230 >gi|167817251|ref|ZP_02448931.1| hypothetical protein Bpse9_19079 [Burkholderia pseudomallei 91] Length = 251 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 95/231 (41%), Gaps = 11/231 (4%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLID---SWPSWP--SRVVILVGPSGSGKSCL 80 QL + D+ + E RL + + + P R + G +GSG+S L Sbjct: 15 RQLTLDLGTPPPSTFDNFYSGTNAELVTRLRELDLALAAGPVADRTFYVWGEAGSGRSHL 74 Query: 81 ANIWSDKS--RSTRFSNIAKSLDSILIDTRKPV-LLEDIDLL-DFNDTQLFHIINSIHQY 136 + R+ + LD++ D R + ++D D L D LF++ N + + Sbjct: 75 LQALVHDTTYGHARYVSPQGGLDALAFDPRVSLYAVDDCDALNDAQQIALFNLFNEVRAH 134 Query: 137 D-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195 ++L++ P++ V DL +RL V ++ D+ V+ +R I + Sbjct: 135 PMTALVVAGPAAPLALDVR-EDLRTRLGWGLVFHLAPLTDEGKAAVLKHAAKERGIALAD 193 Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + +Y++ R + L+D +D +L + +T L +L ++ + Sbjct: 194 DVPSYLLTHFRRDMPSLMSLLDALDRFSLEQKRAVTLPLLRAMLAAPEREE 244 >gi|126667545|ref|ZP_01738515.1| DNA replication initiation factor [Marinobacter sp. ELB17] gi|126627971|gb|EAZ98598.1| DNA replication initiation factor [Marinobacter sp. ELB17] Length = 238 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 47/232 (20%), Positives = 91/232 (39%), Gaps = 23/232 (9%) Query: 27 QLFFSFPRCLGISRDDL------LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80 QL D+ V ++QA + + VV+L G S +GKS L Sbjct: 11 QLILGVKLRDDARFDNFHGERNAAVAERLQQACQPPVT-----VPVVVLCGDSDTGKSHL 65 Query: 81 ANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFH 128 + S S + S+ + ++ V L+D+D + + +FH Sbjct: 66 LQALCHYAESQSLSAVCISITELGPFGPDALTGLEQFNLVCLDDLDSVVGQTGWEEAVFH 125 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 + N + L+++ P S LPDL SRL +++ + D +++++ Sbjct: 126 LYNRMLDAGHQLVVSLSDVPASLPFILPDLSSRLSHGLTLQLGIYRDSDRKRILMARVEQ 185 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 R + + +A +I++R R L ++D +D +L +T V+ Sbjct: 186 RGLVMADDVAGFILRRAPRRLGELLAILDSLDENSLQAQRRLTIPFVKTVMN 237 >gi|251790569|ref|YP_003005290.1| DNA replication initiation factor [Dickeya zeae Ech1591] gi|247539190|gb|ACT07811.1| DnaA regulatory inactivator Hda [Dickeya zeae Ech1591] Length = 235 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 34/230 (14%), Positives = 84/230 (36%), Gaps = 13/230 (5%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 N QL + + + + G G+S L + Sbjct: 4 NTPAQLSLPLYLPDDETFASFYPGENTSLLAAIHTTLDQEHGSYIYFWSREGGGRSHLLH 63 Query: 83 IWSDK----SRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHII 130 + R+ + + K + ++ V +++I+ + ++ LF++ Sbjct: 64 AACAELSRLGRAVGYVPLDKRAYFVPDVLEGMEQLALVCIDNIESIAGDEVWEMALFNLY 123 Query: 131 NSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N I + LL+T P + L DL SRL + ++ D + + R Sbjct: 124 NRIQEGGRTRLLITGDRPPRQINLQLADLASRLDWGQIYRLQPLSDQEKGEALQLRARLR 183 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + + ++ ++++R++R + +D++D+ +++ +T E+L Sbjct: 184 GFELPEDVSRFLLKRLDREMRTLFMTLDQLDHASITAQRKLTIPFVKEIL 233 >gi|262277378|ref|ZP_06055171.1| probable ATPase involved in DNA replication initiation [alpha proteobacterium HIMB114] gi|262224481|gb|EEY74940.1| probable ATPase involved in DNA replication initiation [alpha proteobacterium HIMB114] Length = 218 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 107/204 (52%), Gaps = 6/204 (2%) Query: 41 DDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 ++L+ ++ + +D +P+W ++++ +VG SGKS + ++ K++ SN Sbjct: 18 ENLIRDTSNSNVLNFLDKFPNWDTKLINIVGEKKSGKSFILQLFRKKNQFNYISN----K 73 Query: 101 DSILIDTRKPVLLEDI--DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158 + + L++ + D N+ + F +IN + L++++R + L DL Sbjct: 74 EDFERKYDELFLVDKLILDGFQINEDKFFSLINHFILHKKYLIISSREPLTILEIKLLDL 133 Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218 SRLK +++I P DD + +I+K F+D QI I K L YIV++++RS EK + K Sbjct: 134 KSRLKEFLLIEIQNPSDDLIYSLILKYFSDNQIVIKKDLVEYIVKKIDRSYSSIEKFLIK 193 Query: 219 MDNLALSRGMGITRSLAAEVLKET 242 +++ ++ + I L EVL ET Sbjct: 194 LNDQSIIKKKKIDYKLINEVLNET 217 >gi|107021836|ref|YP_620163.1| DnaA regulatory inactivator Hda [Burkholderia cenocepacia AU 1054] gi|116688783|ref|YP_834406.1| hypothetical protein Bcen2424_0760 [Burkholderia cenocepacia HI2424] gi|105892025|gb|ABF75190.1| Chromosomal replication initiator, DnaA [Burkholderia cenocepacia AU 1054] gi|116646872|gb|ABK07513.1| Chromosomal replication initiator, DnaA [Burkholderia cenocepacia HI2424] Length = 261 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 79/227 (34%), Gaps = 10/227 (4%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW------PSRVVILVGPSGSGKS 78 QL + D+ ++ ++ V + P R + G GSG++ Sbjct: 19 SRQLTLDLGTPPPATFDNFIMSDENDELVTRLQKLDLALAAGPVPDRSFYIWGEPGSGRT 78 Query: 79 CLANIWSDKSR---STRFSNIAKSLDSILIDTRKPVLLEDIDLL-DFNDTQLFHIINSIH 134 L + + + + ++D D + D LF++ N + Sbjct: 79 HLLQALVSDASYGYARYLTPQSPLGAFTFDPRIGIYAIDDCDRMSDTQQVALFNLFNEVR 138 Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194 + SS + A DL +RL V +S P D V+ +R I + Sbjct: 139 AHPSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLSPPSDAGKIAVLKLAAKERGIALT 198 Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 +AAY++ R + L+D +D +L + +T L +L Sbjct: 199 DDIAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRRMLAR 245 >gi|188533206|ref|YP_001907003.1| DNA replication initiation factor [Erwinia tasmaniensis Et1/99] gi|188028248|emb|CAO96106.1| DnaA-homolog protein hda [Erwinia tasmaniensis Et1/99] Length = 235 Score = 152 bits (384), Expect = 6e-35, Method: Composition-based stats. Identities = 36/231 (15%), Positives = 80/231 (34%), Gaps = 13/231 (5%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 N QL + L + G G+S L + Sbjct: 4 NTPAQLSLPLYLPDDETFASFWPGENTSLLAALQSALHQHHGSYFYFWSREGGGRSHLLH 63 Query: 83 IWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFNDT---QLFHII 130 + + + LD ++ V +++I+ + ++ +F + Sbjct: 64 AACAELSAQGDAVGYVPLDKRTWFVPEVLDGMEQLSLVCIDNIECIAGDELWEMAIFDLY 123 Query: 131 NSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N I + LL+T P + L DL SRL + K+ D+ + + R Sbjct: 124 NRILETGKTRLLITGDRPPRQLNLKLADLASRLDWGQIYKLQPLSDEDKLQALQLRARLR 183 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + + ++++R++R + +D++D+ ++S +T E L+ Sbjct: 184 GFELPEDVGRFLLKRLDREMRTLFVTLDRLDHASISAQRKLTIPFVKEALE 234 >gi|53720428|ref|YP_109414.1| DnaA regulatory inactivator Hda [Burkholderia pseudomallei K96243] gi|53725782|ref|YP_103877.1| DnaA regulatory inactivator Hda [Burkholderia mallei ATCC 23344] gi|67642143|ref|ZP_00440904.1| DnaA regulatory inactivator Hda [Burkholderia mallei GB8 horse 4] gi|121600449|ref|YP_991858.1| DnaA regulatory inactivator Hda [Burkholderia mallei SAVP1] gi|124385971|ref|YP_001027075.1| DnaA regulatory inactivator Hda [Burkholderia mallei NCTC 10229] gi|126440017|ref|YP_001060280.1| DnaA regulatory inactivator Hda [Burkholderia pseudomallei 668] gi|126450632|ref|YP_001081726.1| DnaA regulatory inactivator Hda [Burkholderia mallei NCTC 10247] gi|126454849|ref|YP_001067539.1| hypothetical protein BURPS1106A_3302 [Burkholderia pseudomallei 1106a] gi|166998833|ref|ZP_02264685.1| DnaA regulatory inactivator Hda [Burkholderia mallei PRL-20] gi|167721062|ref|ZP_02404298.1| hypothetical protein BpseD_18786 [Burkholderia pseudomallei DM98] gi|167740033|ref|ZP_02412807.1| hypothetical protein Bpse14_18373 [Burkholderia pseudomallei 14] gi|167817252|ref|ZP_02448932.1| hypothetical protein Bpse9_19084 [Burkholderia pseudomallei 91] gi|167825663|ref|ZP_02457134.1| hypothetical protein Bpseu9_18472 [Burkholderia pseudomallei 9] gi|167847150|ref|ZP_02472658.1| hypothetical protein BpseB_17887 [Burkholderia pseudomallei B7210] gi|167895732|ref|ZP_02483134.1| hypothetical protein Bpse7_18471 [Burkholderia pseudomallei 7894] gi|167904124|ref|ZP_02491329.1| hypothetical protein BpseN_17881 [Burkholderia pseudomallei NCTC 13177] gi|167912383|ref|ZP_02499474.1| hypothetical protein Bpse112_17994 [Burkholderia pseudomallei 112] gi|167920338|ref|ZP_02507429.1| hypothetical protein BpseBC_17459 [Burkholderia pseudomallei BCC215] gi|217421013|ref|ZP_03452518.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei 576] gi|226194260|ref|ZP_03789859.1| DnaA regulatory inactivator Hda [Burkholderia pseudomallei Pakistan 9] gi|242314326|ref|ZP_04813342.1| DnaA regulatory inactivator Hda [Burkholderia pseudomallei 1106b] gi|254261539|ref|ZP_04952593.1| DnaA regulatory inactivator Hda [Burkholderia pseudomallei 1710a] gi|52210842|emb|CAH36829.1| conserved hypothetical protein [Burkholderia pseudomallei K96243] gi|52429205|gb|AAU49798.1| conserved hypothetical protein [Burkholderia mallei ATCC 23344] gi|121229259|gb|ABM51777.1| conserved hypothetical protein [Burkholderia mallei SAVP1] gi|124293991|gb|ABN03260.1| DnaA regulatory inactivator Hda [Burkholderia mallei NCTC 10229] gi|126219510|gb|ABN83016.1| DnaA regulatory inactivator Hda [Burkholderia pseudomallei 668] gi|126228491|gb|ABN92031.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei 1106a] gi|126243502|gb|ABO06595.1| DnaA regulatory inactivator Hda [Burkholderia mallei NCTC 10247] gi|217396425|gb|EEC36442.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei 576] gi|225933725|gb|EEH29713.1| DnaA regulatory inactivator Hda [Burkholderia pseudomallei Pakistan 9] gi|238523235|gb|EEP86675.1| DnaA regulatory inactivator Hda [Burkholderia mallei GB8 horse 4] gi|242137565|gb|EES23967.1| DnaA regulatory inactivator Hda [Burkholderia pseudomallei 1106b] gi|243064918|gb|EES47104.1| DnaA regulatory inactivator Hda [Burkholderia mallei PRL-20] gi|254220228|gb|EET09612.1| DnaA regulatory inactivator Hda [Burkholderia pseudomallei 1710a] Length = 241 Score = 151 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 95/231 (41%), Gaps = 11/231 (4%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLID---SWPSWP--SRVVILVGPSGSGKSCL 80 QL + D+ + E RL + + + P R + G +GSG+S L Sbjct: 5 RQLTLDLGTPPPSTFDNFYSGTNAELVTRLRELDLALAAGPVADRTFYVWGEAGSGRSHL 64 Query: 81 ANIWSDKS--RSTRFSNIAKSLDSILIDTRKPV-LLEDIDLL-DFNDTQLFHIINSIHQY 136 + R+ + LD++ D R + ++D D L D LF++ N + + Sbjct: 65 LQALVHDTTYGHARYVSPQGGLDALAFDPRVSLYAVDDCDALNDAQQIALFNLFNEVRAH 124 Query: 137 D-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195 ++L++ P++ V DL +RL V ++ D+ V+ +R I + Sbjct: 125 PMTALVVAGPAAPLALDVR-EDLRTRLGWGLVFHLAPLTDEGKAAVLKHAAKERGIALAD 183 Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + +Y++ R + L+D +D +L + +T L +L ++ + Sbjct: 184 DVPSYLLTHFRRDMPSLMSLLDALDRFSLEQKRAVTLPLLRAMLAAPEREE 234 >gi|254361165|ref|ZP_04977309.1| DNA replication initiation protein A [Mannheimia haemolytica PHL213] gi|153092656|gb|EDN73705.1| DNA replication initiation protein A [Mannheimia haemolytica PHL213] Length = 236 Score = 151 bits (383), Expect = 7e-35, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 92/234 (39%), Gaps = 20/234 (8%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 QL + + D+ ++ L ++ + G GKS L S Sbjct: 1 MQLPLPIHQIDEDTFDNFYSQNSEVLLGSLKRNFTDVQQPFFYIWGGKSCGKSHLLKAVS 60 Query: 86 D------KSRSTRFSNIAKSLDSILIDTRKP---VLLEDIDLLDFN---DTQLFHIINSI 133 + ++ S A +++D + + L+DI + + + +F++ N I Sbjct: 61 NHFLLNNQTSSYIPLTKANYFSPLVLDNAELLNVICLDDIQAIAGDAEWELAIFNLFNQI 120 Query: 134 HQYDSS--------LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 + LL++A P + LPDL SRL V +++ D+ +++ Sbjct: 121 REQQGLFNEGQKTLLLISADCPPHQLNIQLPDLRSRLTWGEVYQLNDLTDEQKCQILQLN 180 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + + + ++A +++++ L K++DK+D +L +T E+L Sbjct: 181 AHQKGVELSDEVAHFLLKKAGTDLEQLSKILDKLDKASLQAQRKLTIPFVKEIL 234 >gi|82523748|emb|CAI78748.1| chromosomal replication initiator protein dnaA [uncultured gamma proteobacterium] Length = 243 Score = 151 bits (383), Expect = 7e-35, Method: Composition-based stats. Identities = 44/237 (18%), Positives = 88/237 (37%), Gaps = 11/237 (4%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP-SRVVILVGP 72 ++ QL + D+ L S + V + ++ + GP Sbjct: 5 GPTNRTAGPARQHQLPLEIHLRDDATMDNFLTVSRSQPLVSALQHQMDADGEAIIYVYGP 64 Query: 73 SGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL-------IDTRKPVLLEDIDLLDFN--- 122 G+GKS L R+ L ++ V ++D+ + + Sbjct: 65 PGAGKSHLLQASCHAGRAETLYLPLAELRQFPGQEVMQGVERLDRVCIDDVQAVLGDADW 124 Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 + LF+ N Q +++ P + V L DL SRL V +++ D+ ++ Sbjct: 125 ELALFNFCNGARQRGCRMVVAGDAAPRALAVNLADLRSRLSWGIVYQLAEGSDEEKVDIL 184 Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + + K +A +IV R R+ ++D++D +L+R ++ EV+ Sbjct: 185 RFRATRRGLSLSKSVATFIVSRAPRATEQLLMVLDQLDKHSLARQRALSIPFVKEVM 241 >gi|83718791|ref|YP_441863.1| DnaA regulatory inactivator Hda [Burkholderia thailandensis E264] gi|83652616|gb|ABC36679.1| conserved hypothetical protein [Burkholderia thailandensis E264] Length = 334 Score = 151 bits (382), Expect = 8e-35, Method: Composition-based stats. Identities = 47/232 (20%), Positives = 95/232 (40%), Gaps = 11/232 (4%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLID---SWPSWP--SRVVILVGPSGSGKSC 79 QL + D+ + E RL + + + P R + G +GSG+S Sbjct: 97 SRQLTLDLGTPPPATFDNFYSGTNAELVTRLRELDLALAAGPVADRTFYVWGEAGSGRSH 156 Query: 80 LANIWSDKS--RSTRFSNIAKSLDSILIDTRKPV-LLEDIDLL-DFNDTQLFHIINSIHQ 135 L + R+ + LD++ D R + ++D D L D LF++ N + Sbjct: 157 LLQALVHDTTYGHARYVSPQGGLDALAFDPRVSLYAVDDCDALNDAQQIALFNLFNEVRA 216 Query: 136 YD-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194 + ++L++ P++ V DL +RL V ++ D+ V+ +R I + Sbjct: 217 HPMTALVVAGPAAPLALDVR-EDLRTRLGWGLVFHLAPLTDEGKAAVLKHAAKERGIALA 275 Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + +Y++ R + L+D +D +L + +T L +L ++ + Sbjct: 276 DDVPSYLLTHFRRDMPSLMSLLDALDRFSLEQKRAVTLPLLRAMLAAPERDE 327 >gi|167580698|ref|ZP_02373572.1| hypothetical protein BthaT_21263 [Burkholderia thailandensis TXDOH] gi|167618803|ref|ZP_02387434.1| hypothetical protein BthaB_21007 [Burkholderia thailandensis Bt4] gi|257138032|ref|ZP_05586294.1| DnaA regulatory inactivator Hda [Burkholderia thailandensis E264] Length = 241 Score = 151 bits (382), Expect = 8e-35, Method: Composition-based stats. Identities = 47/232 (20%), Positives = 95/232 (40%), Gaps = 11/232 (4%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLID---SWPSWP--SRVVILVGPSGSGKSC 79 QL + D+ + E RL + + + P R + G +GSG+S Sbjct: 4 SRQLTLDLGTPPPATFDNFYSGTNAELVTRLRELDLALAAGPVADRTFYVWGEAGSGRSH 63 Query: 80 LANIWSDKS--RSTRFSNIAKSLDSILIDTRKPV-LLEDIDLL-DFNDTQLFHIINSIHQ 135 L + R+ + LD++ D R + ++D D L D LF++ N + Sbjct: 64 LLQALVHDTTYGHARYVSPQGGLDALAFDPRVSLYAVDDCDALNDAQQIALFNLFNEVRA 123 Query: 136 YD-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194 + ++L++ P++ V DL +RL V ++ D+ V+ +R I + Sbjct: 124 HPMTALVVAGPAAPLALDVR-EDLRTRLGWGLVFHLAPLTDEGKAAVLKHAAKERGIALA 182 Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + +Y++ R + L+D +D +L + +T L +L ++ + Sbjct: 183 DDVPSYLLTHFRRDMPSLMSLLDALDRFSLEQKRAVTLPLLRAMLAAPERDE 234 >gi|325266646|ref|ZP_08133323.1| DnaA regulatory inactivator Hda [Kingella denitrificans ATCC 33394] gi|324982089|gb|EGC17724.1| DnaA regulatory inactivator Hda [Kingella denitrificans ATCC 33394] Length = 252 Score = 151 bits (382), Expect = 8e-35, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 90/225 (40%), Gaps = 11/225 (4%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL F F R D L+ +A LI + + L G GSGKS + W Sbjct: 33 QLSFDFD-ETAYPRFDKLLGNANA---ELIYILQQEHDQFLYLWGEQGSGKSHILQAWVG 88 Query: 87 KSRSTRFSNIAKSLDSILIDTRKP----VLLEDIDLLDFNDTQ-LFHIINSIHQYDS-SL 140 ++ S + + + V ++ ++ L+ + LF I N L Sbjct: 89 QAAHAGHSALYIDVGKTPLHDTAAEYDFVAIDQVERLNDQEQAVLFDIFNHFRNSQKGHL 148 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L++A P + DL +R+ V ++ + + + M RQ+ ID + Y Sbjct: 149 LLSADVPPGRLHLR-EDLRTRMSYCLVYEVKSLSSEEKIQALANMAQARQLSIDPDIYRY 207 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 +++ + L + + + N ++++G IT L ++LK+ + Sbjct: 208 LLEHWRQDLNSLLTMFNDLANYSITQGKPITLPLLRKLLKQQENA 252 >gi|254246245|ref|ZP_04939566.1| hypothetical protein BCPG_00978 [Burkholderia cenocepacia PC184] gi|124871021|gb|EAY62737.1| hypothetical protein BCPG_00978 [Burkholderia cenocepacia PC184] Length = 247 Score = 151 bits (382), Expect = 9e-35, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 79/227 (34%), Gaps = 10/227 (4%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW------PSRVVILVGPSGSGKS 78 QL + D+ ++ ++ V + P R + G GSG++ Sbjct: 5 SRQLTLDLGTPPPATFDNFIMSDENDELVTRLQKLDLALAAGPVPDRSFYIWGEPGSGRT 64 Query: 79 CLANIWSDKSR---STRFSNIAKSLDSILIDTRKPVLLEDIDLL-DFNDTQLFHIINSIH 134 L + + + + ++D D + D LF++ N + Sbjct: 65 HLLQALVSDASYGYARYLTPQSPLGAFTFDPRIGIYAIDDCDRMSDTQQVALFNLFNEVR 124 Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194 + SS + A DL +RL V +S P D V+ +R I + Sbjct: 125 AHPSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLSPPSDAGKIAVLKLAAKERGIALT 184 Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 +AAY++ R + L+D +D +L + +T L +L Sbjct: 185 DDIAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRRMLAR 231 >gi|170732082|ref|YP_001764029.1| DnaA regulatory inactivator Hda [Burkholderia cenocepacia MC0-3] gi|169815324|gb|ACA89907.1| DnaA regulatory inactivator Hda [Burkholderia cenocepacia MC0-3] Length = 244 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 79/227 (34%), Gaps = 10/227 (4%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW------PSRVVILVGPSGSGKS 78 QL + D+ ++ ++ V + P R + G GSG++ Sbjct: 2 SRQLTLDLGTPPPATFDNFIMSDENDELVTRLQKLDLALAAGPVPDRSFYIWGEPGSGRT 61 Query: 79 CLANIWSDKSR---STRFSNIAKSLDSILIDTRKPVLLEDIDLL-DFNDTQLFHIINSIH 134 L + + + + ++D D + D LF++ N + Sbjct: 62 HLLQALVSDASYGYARYLTPQSPLGAFTFDPRIGIYAIDDCDRMSDTQQVALFNLFNEVR 121 Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194 + SS + A DL +RL V +S P D V+ +R I + Sbjct: 122 AHPSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLSPPSDAGKIAVLKLAAKERGIALT 181 Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 +AAY++ R + L+D +D +L + +T L +L Sbjct: 182 DDIAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRRMLAR 228 >gi|156932962|ref|YP_001436878.1| DNA replication initiation factor [Cronobacter sakazakii ATCC BAA-894] gi|269969358|sp|A7ML17|HDA_ENTS8 RecName: Full=DnaA-homolog protein hda gi|156531216|gb|ABU76042.1| hypothetical protein ESA_00765 [Cronobacter sakazakii ATCC BAA-894] Length = 225 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 33/207 (15%), Positives = 85/207 (41%), Gaps = 17/207 (8%) Query: 47 SAIEQAVR-LIDSWPSWPSRVVILVGPSGSGKSCLANIWSD----KSRSTRFSNIAKSLD 101 ++ A++ ++ S + G G+S L + + + + + K Sbjct: 20 PSLLAALQTMLRHDR---SGYIYFWSREGGGRSHLLHAACAELSQRGDAVGYVPLDKRTW 76 Query: 102 SIL-----IDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQYD-SSLLMTARTFPVSWG 152 + ++ V +++I+ + ++ +F++ N I + + LL+T P Sbjct: 77 FVPEVLEGMEQLSLVCIDNIECIAGDEPWEMAIFNLYNRILESGNTRLLITGDRPPRQLN 136 Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 + LPDL SRL + ++ DD + + R + + + ++++R++R + Sbjct: 137 LKLPDLASRLDWGQIYRLQPLSDDDKLQALQLRARMRGFELPEDVGRFLLKRLDREMRTL 196 Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVL 239 +D++D ++S +T + L Sbjct: 197 FLTLDQLDRASISAQRKLTIPFVKDTL 223 >gi|332283314|ref|YP_004415225.1| hypothetical protein PT7_0061 [Pusillimonas sp. T7-7] gi|330427267|gb|AEC18601.1| hypothetical protein PT7_0061 [Pusillimonas sp. T7-7] Length = 233 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 96/231 (41%), Gaps = 19/231 (8%) Query: 26 EQLFFSF--PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI 83 +QL P + D V ++AV+ + P R V L G G+G++ L Sbjct: 3 QQLILDLLPPSPPSL---DNFVAGQNQEAVQALRD--CSPGRAVYLWGAPGAGRTHLLQS 57 Query: 84 WSDKSRSTRFSNIA-----KSLDSILIDTRKPVLLEDIDLLDFN-DTQLFHIINSIHQ-- 135 + + + F + +S+ S + + + +++++ LD + LF + N + Sbjct: 58 VASGADTRYFHHSDNAQSLRSIASADLLAYRLIAIDNVESLDDDRQAALFALYNRWREVA 117 Query: 136 ---YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 +L++ P++ + DL +RL V ++ D+ + + ADR + Sbjct: 118 ATPQGFALVLAGDRAPLTMPLR-EDLRTRLGWDLVFRLEQLSDEHRAQALSTRAADRGLQ 176 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 + ++ +++ R + L+D +D +L R IT L E+L Q Sbjct: 177 LGPEVINWVLTHYTRDMRHLSALIDALDRYSLERHRAITLPLLKELLASGQ 227 >gi|186477238|ref|YP_001858708.1| DnaA regulatory inactivator Hda [Burkholderia phymatum STM815] gi|184193697|gb|ACC71662.1| DnaA regulatory inactivator Hda [Burkholderia phymatum STM815] Length = 257 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 91/231 (39%), Gaps = 11/231 (4%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLID---SWPSWP--SRVVILVGPSGSGKSC 79 QL + D+ + E RL + + + P R + G +GSG++ Sbjct: 2 SRQLTLDLGTPPPSTFDNFFAGANAELVTRLRELDAALAAGPVADRTFYVWGETGSGRTH 61 Query: 80 LANIWSDKS--RSTRFSNIAKSLDSILIDTRKPV-LLEDIDLLDF-NDTQLFHIINSIHQ 135 L ++ R++ SL + D + ++D D L LF+++N + Sbjct: 62 LLEALVHEAPPGHARYAGPQSSLAAFTFDPAVTLYAVDDCDRLSGAQQIALFNLVNEVRA 121 Query: 136 YDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194 + +S L++ P+ V DL +R+ V ++ D+ V+ + +R I + Sbjct: 122 HPTSALVVAGNAAPMGLEVR-EDLRTRMGWGLVFHVAPLADEGKAAVLKRAARERGINLA 180 Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 + AY++ R + L+D +D +L + +T L +L Sbjct: 181 DDVPAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRTMLASPDNA 231 >gi|56460576|ref|YP_155857.1| DNA replication initiation ATPase [Idiomarina loihiensis L2TR] gi|56179586|gb|AAV82308.1| ATPase involved in DNA replication initiation [Idiomarina loihiensis L2TR] Length = 237 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 100/237 (42%), Gaps = 24/237 (10%) Query: 25 EEQLFFS--FPRCLGISRDDLLVHSAIEQAVRLIDSWPS------WPSRVVILVGPSGSG 76 +QL + P S L + ++S P+ ++ L G SG G Sbjct: 3 PQQLPLAVQLPDDEIFS--TFLAGD-NSTLLSWLESLPTTEPPLRRSQQLTWLSGASGVG 59 Query: 77 KSCLAN-IWSDKSRSTRFSNIAKSLDSIL--------IDTRKPVLLEDIDLLDFNDT--- 124 KS L + + + R + + + ID + L+DID + Sbjct: 60 KSHLMHSVIASAGSQYRIAYLPLRELAKADASAVLQGIDQADLICLDDIDTVTLEQNWSF 119 Query: 125 QLFHIINSIHQYD-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 +LF +IN + + + L+MTA+ V LPDL SR + AT ++ +D+ ++ Sbjct: 120 ELFSLINRVTDNESTRLVMTAKQSAAQTKVLLPDLQSRFQWATGFQVQPLNDEEKINALI 179 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 R + + +AA++ QR+ RS+ K ++++D +++ +T +VL+ Sbjct: 180 LRAQWRGLELPNDVAAFMTQRLGRSMRDLMKALNELDKASITYQRRLTIPFVKQVLE 236 >gi|88799318|ref|ZP_01114896.1| hypothetical protein MED297_16968 [Reinekea sp. MED297] gi|88777857|gb|EAR09054.1| hypothetical protein MED297_16968 [Reinekea sp. MED297] Length = 235 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 47/226 (20%), Positives = 86/226 (38%), Gaps = 14/226 (6%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLID-SWPSWPSRVVILVGPSGSGKSCLANIWS 85 QL +D L A+ + S + ++ L G G G S L Sbjct: 9 QLPLHVSFAEDAVFEDYLPGQ-NAIAIGTLRQSLANLTDHLIYLWGAKGVGVSHLLQASI 67 Query: 86 DKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFHIINSI 133 + F + L L +D V L+DIDL+ + +FH N + Sbjct: 68 HDLQVQGFDAVYLPLSECLEYGPEALEGLDQLHAVALDDIDLIAADAHWQEAVFHFYNRM 127 Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193 L++ AR P+ + L DL SRL + + + D+ ++ R + I Sbjct: 128 RDSGRHLMVGARCSPLQLPLTLADLKSRLSSGLTISLLPMTDEERVTWVIWKGRRRGLVI 187 Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + +A +++ R +++ D++D+ +L+ IT +VL Sbjct: 188 GRDVAEFLITRHNQNMKELVTTFDRLDSASLAEKRKITIPFLKQVL 233 >gi|148827064|ref|YP_001291817.1| DNA replication initiation factor [Haemophilus influenzae PittGG] gi|148718306|gb|ABQ99433.1| DNA replication initiation factor [Haemophilus influenzae PittGG] Length = 185 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 43/183 (23%), Positives = 83/183 (45%), Gaps = 13/183 (7%) Query: 71 GPSGSGKSCLANIWSDKS----RSTRFSNIAKS-----LDSILIDTRKPVLLEDIDLLDF 121 G GSGK+ L +S++ R+ + ++KS ++ ++ V L+D+ + Sbjct: 2 GNKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQYFSTAVLENLEQQELVCLDDLQSVIG 61 Query: 122 NDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 ND +F + N I +LL+ +A P + V LPDL SRL + +++ D+ Sbjct: 62 NDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGEIYQLNSLTDEQ 121 Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237 KV+ R + + A +++ R+ R + + +D +D +L +T E Sbjct: 122 KIKVLQLAAYQRGFQLSDETANFLITRLARDMHTLFEALDLLDKASLQAQRNLTIPFVKE 181 Query: 238 VLK 240 +L Sbjct: 182 ILN 184 >gi|90408515|ref|ZP_01216673.1| DNA replication initiation factor [Psychromonas sp. CNPT3] gi|90310394|gb|EAS38521.1| DNA replication initiation factor [Psychromonas sp. CNPT3] Length = 242 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 37/195 (18%), Positives = 75/195 (38%), Gaps = 18/195 (9%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS---------ILIDTRKPVLLE 114 V+ + G +GSG+S L + + S L +++ V ++ Sbjct: 47 EPVLYMWGDAGSGRSHLLHALCSEVDERGESVSYIPLHHHQGMSLDIFENMESVTLVCID 106 Query: 115 DIDLLDFN---DTQLFHIINS------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 +ID + N + LF N +SL+++A P G+ L DL SR + Sbjct: 107 NIDAIAGNAEWEKALFDFYNRWLDNKENRPTGASLVLSAMHLPKQIGIELKDLVSRFEWG 166 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 + +D+ + + + + + +++ R+ R + +D++DN +L Sbjct: 167 ACYHLEPLNDEEKLGALQLRAQLKGMKLPVDVGRFLLNRLSREMDTLLDTLDRLDNASLE 226 Query: 226 RGMGITRSLAAEVLK 240 +T EVL Sbjct: 227 AKRKLTIPFVKEVLD 241 >gi|57012733|sp|Q7N3G5|HDA_PHOLL RecName: Full=DnaA-homolog protein hda gi|36786074|emb|CAE15126.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 233 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 85/232 (36%), Gaps = 15/232 (6%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP-SRVVILVGPSGSGKSCLA 81 N QL + + I + P + G+S L Sbjct: 2 NTPSQLSLPLYLPDDETFASFFPGE-NATLLAAIKLAINQPHGSYIYFWSRDSGGRSHLL 60 Query: 82 NIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHI 129 + K + + + K I ++ V +++I+ + ++ +F++ Sbjct: 61 HAACAELSLKDEAVGYVPLDKRAYFIPEVLDGMEHLSLVCIDNIESIAGDEEWEMAIFNL 120 Query: 130 INSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N I + + LL++ P + LPDL SRL + K+ DD + + Sbjct: 121 YNRILEIGRTCLLISGDRPPRQINLKLPDLASRLDWGQIYKLQPLSDDEKLQALQLRAKL 180 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 R + + + ++++R++R + ++++D+ ++ +T ++L Sbjct: 181 RGFELPEDVGRFLLKRLDREMRTLFMALNQLDHASIVAQRKLTIPFVKDILH 232 >gi|259907761|ref|YP_002648117.1| DNA replication initiation factor [Erwinia pyrifoliae Ep1/96] gi|224963383|emb|CAX54869.1| DnaA-homolog protein Hda [Erwinia pyrifoliae Ep1/96] gi|283477620|emb|CAY73536.1| Chromosomal replication initiator protein dnaA [Erwinia pyrifoliae DSM 12163] gi|310764732|gb|ADP09682.1| DNA replication initiation factor [Erwinia sp. Ejp617] Length = 235 Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 36/233 (15%), Positives = 81/233 (34%), Gaps = 17/233 (7%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVH--SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80 N QL + ++ A++ G G+S L Sbjct: 4 NTPAQLSLPLYLPDDETFASFWPGENPSLLAALQSALHQQH--GSYFYFWSREGGGRSHL 61 Query: 81 ANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFH 128 + + + + LD ++ V +++I+ + + + +F Sbjct: 62 LHAACAELSAKGEAVGYVPLDKRTWFVPEVLDGMEQLALVCIDNIECIAGDGPWEMAIFD 121 Query: 129 IINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 + N I + LL+T P + L DL SRL + K+ D+ + + Sbjct: 122 LYNRILETGKTRLLITGDRPPRQLNLKLADLASRLDWGQIYKLQPLCDEDKLQALQLRAR 181 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 R + + + ++++R++R + +D++D ++S +T E L Sbjct: 182 LRGFELPEDVGRFLLKRLDREMRTLFVTLDQLDRASISAQRKLTIPFVKEALA 234 >gi|325981411|ref|YP_004293813.1| DnaA regulatory inactivator Hda [Nitrosomonas sp. AL212] gi|325530930|gb|ADZ25651.1| DnaA regulatory inactivator Hda [Nitrosomonas sp. AL212] Length = 225 Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 39/223 (17%), Positives = 85/223 (38%), Gaps = 10/223 (4%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSR--VVILVGPSGSGKSCLANI 83 +Q+ + ++ L + + ++ S S + + L G G GKS L Sbjct: 2 QQMLLDINPLPLPTLENFLPG-RNAELIYMLRSILSGKEKECFIYLWGNPGCGKSHLLRA 60 Query: 84 ----WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID-LLDFNDTQLFHIINSIHQYDS 138 ++ K+ + + ++DI L +LF + N + + Sbjct: 61 IVTAYARKNAKSVYHCAENHYPFRSDSAADCFAIDDIHGLGAAGQAELFSLYNRLREDGH 120 Query: 139 SLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 +LL+ + T P + DL +RL V ++ ++ + + AD + +++ Sbjct: 121 ALLLVSGSTAPAYLDMR-QDLVTRLGWGLVYQVHELTEEEKTQAMQTHAADCGFTLPQEI 179 Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 Y+++ R L +D ++ +L IT L E+L+ Sbjct: 180 CVYLLRHGRRDLPSLMMTLDALNRYSLVHQRPITIPLLRELLQ 222 >gi|161579568|ref|NP_929986.2| DNA replication initiation factor [Photorhabdus luminescens subsp. laumondii TTO1] Length = 235 Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 85/232 (36%), Gaps = 15/232 (6%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP-SRVVILVGPSGSGKSCLA 81 N QL + + I + P + G+S L Sbjct: 4 NTPSQLSLPLYLPDDETFASFFPGE-NATLLAAIKLAINQPHGSYIYFWSRDSGGRSHLL 62 Query: 82 NIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHI 129 + K + + + K I ++ V +++I+ + ++ +F++ Sbjct: 63 HAACAELSLKDEAVGYVPLDKRAYFIPEVLDGMEHLSLVCIDNIESIAGDEEWEMAIFNL 122 Query: 130 INSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N I + + LL++ P + LPDL SRL + K+ DD + + Sbjct: 123 YNRILEIGRTCLLISGDRPPRQINLKLPDLASRLDWGQIYKLQPLSDDEKLQALQLRAKL 182 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 R + + + ++++R++R + ++++D+ ++ +T ++L Sbjct: 183 RGFELPEDVGRFLLKRLDREMRTLFMALNQLDHASIVAQRKLTIPFVKDILH 234 >gi|302877846|ref|YP_003846410.1| DnaA regulatory inactivator Hda [Gallionella capsiferriformans ES-2] gi|302580635|gb|ADL54646.1| DnaA regulatory inactivator Hda [Gallionella capsiferriformans ES-2] Length = 222 Score = 149 bits (378), Expect = 3e-34, Method: Composition-based stats. Identities = 44/217 (20%), Positives = 86/217 (39%), Gaps = 7/217 (3%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW--PSRVVILVGPSGSGKSCLANIW 84 QL + D+ V + + ++ S R V + G GSGKS L Sbjct: 3 QLLLDITPDWWPTFDNF-VAGGNAELLSVLHQALSGESTDRCVYVWGADGSGKSHLLQAC 61 Query: 85 SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD-FNDTQLFHIINSIHQYDSSLLMT 143 +++ + I + + + V ++D D LD +LF++ N + LL++ Sbjct: 62 VGVAQNAHLNAIYAQ--GYVPEPAEVVAVDDADTLDEAGQIELFNLYNWMRDSGGMLLVS 119 Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203 + P+ V DL +RL V ++ D+ +V R + ++ Y+++ Sbjct: 120 GLSSPLHLNVR-ADLRTRLGWGLVYQVQGLSDEEKALALVGHAQGRGFALAPEVVQYLLR 178 Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 R L ++D +D +L + L EV++ Sbjct: 179 HGRRDLPSLLTVLDALDEHSLRLHRAPSIPLLKEVMQ 215 >gi|33151946|ref|NP_873299.1| DNA replication initiation factor [Haemophilus ducreyi 35000HP] gi|33148168|gb|AAP95688.1| conserved probable chromosomal replication initiator protein [Haemophilus ducreyi 35000HP] Length = 236 Score = 149 bits (378), Expect = 3e-34, Method: Composition-based stats. Identities = 40/196 (20%), Positives = 82/196 (41%), Gaps = 20/196 (10%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKS-----RSTRF----SNIAKSLDSILIDTRKPVLLE 114 + G GKS L S++ ++ S+ L I+ + L+ Sbjct: 39 QPFFYIWGAKSCGKSHLLKAVSNQYLLSQKTASYIPLTKSHYFSPLVLDNIEQMDVICLD 98 Query: 115 DIDLLDFNDT---QLFHIINSIHQ--------YDSSLLMTARTFPVSWGVCLPDLCSRLK 163 D+ + N+ +F + N I + + + LL++A P + LPDL SRL Sbjct: 99 DLQAIANNEEWELAIFDLFNKIREQQSLFNQGHKTLLLISANCSPHQLKIKLPDLKSRLT 158 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 V ++ DD ++ + + I + +++A ++++R++R L +DK+D + Sbjct: 159 WGEVYQLYDLTDDQKIVILQRKAYQKGIELSEEVANFLLKRLDRDLPVLLAELDKLDRAS 218 Query: 224 LSRGMGITRSLAAEVL 239 L +T E++ Sbjct: 219 LQAKRKLTMPFVKEII 234 >gi|300309966|ref|YP_003774058.1| DnaA regulatory inactivator Hda protein [Herbaspirillum seropedicae SmR1] gi|300072751|gb|ADJ62150.1| DnaA regulatory inactivator Hda protein [Herbaspirillum seropedicae SmR1] Length = 238 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 40/237 (16%), Positives = 86/237 (36%), Gaps = 20/237 (8%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQ--------AVRLIDSWP----SWPSRVVILVGPS 73 +Q+ S D V + A +D + R + L + Sbjct: 2 KQIPLDLSADQPQSFDSF-VTGRNAELLERLKLLATAGVDQSTQTGSASTDRFLYLWAEA 60 Query: 74 GSGKSCLANIWSDKS-----RSTRFSNIAKSLDSILIDTRKPVLLEDIDLL-DFNDTQLF 127 G+GK+ L + + ++ + LL+D+D L + F Sbjct: 61 GAGKTHLLQALATRVAQEGRQARLIRADSPDAAFDYSPQITHYLLDDVDQLFEEQQIAAF 120 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 ++ N I + ++ + P + DL +RL + ++ DD ++++ Sbjct: 121 NLFNQIREQGGWMVCSGTLPPTRLELR-EDLRTRLGWGLIYQVHDLSDDEKIAALLQITL 179 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 DR + I + Y++ R + +++D +D +L+ IT L E+L++ Sbjct: 180 DRGLEIPPAVMMYMLTHYRRDMPSLSRMLDALDRYSLATKRAITLPLLRELLQQESG 236 >gi|115350708|ref|YP_772547.1| DnaA regulatory inactivator Hda [Burkholderia ambifaria AMMD] gi|115280696|gb|ABI86213.1| Chromosomal replication initiator, DnaA [Burkholderia ambifaria AMMD] Length = 318 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 80/227 (35%), Gaps = 10/227 (4%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW------PSRVVILVGPSGSGKS 78 QL + D+ +++ ++ + + P R + G GSG++ Sbjct: 76 SRQLTLDLGTPPPATFDNFIMNEENDELISRLQKLDLALAAGPVPDRSFYIWGEPGSGRT 135 Query: 79 CLANIWSDKSR---STRFSNIAKSLDSILIDTRKPVLLEDIDLL-DFNDTQLFHIINSIH 134 L + + + + ++D D + D LF++ N + Sbjct: 136 HLLQALVSDASYGYARYLTPQSPLGAFTFDPRIGIYAIDDCDRMSDTQQVALFNLFNEVR 195 Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194 + SS + A DL +RL V +S P D V+ +R I + Sbjct: 196 AHPSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLSPPSDAGKIAVLKLAAKERGIALT 255 Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 +AAY++ R + L+D +D +L + +T L +L Sbjct: 256 DDIAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRRMLAR 302 >gi|187929928|ref|YP_001900415.1| DnaA regulatory inactivator Hda [Ralstonia pickettii 12J] gi|241664038|ref|YP_002982398.1| DnaA regulatory inactivator Hda [Ralstonia pickettii 12D] gi|309781370|ref|ZP_07676106.1| DnaA regulatory inactivator Hda [Ralstonia sp. 5_7_47FAA] gi|187726818|gb|ACD27983.1| conserved hypothetical protein [Ralstonia pickettii 12J] gi|240866065|gb|ACS63726.1| DnaA regulatory inactivator Hda [Ralstonia pickettii 12D] gi|308919783|gb|EFP65444.1| DnaA regulatory inactivator Hda [Ralstonia sp. 5_7_47FAA] Length = 233 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 91/229 (39%), Gaps = 15/229 (6%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDS------WPSWPSRVVILVGPSGSGKS 78 EQL + D+ V + E+AV + + + R+V L G GSG+S Sbjct: 4 PEQLPLELGATPAPTFDNF-VATGNEEAVLRLRALIPQVVDGTATDRLVYLWGEEGSGRS 62 Query: 79 CLANIWSDKSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLD-FNDTQLFHIINS 132 L ++ + + D+ T ++D + LD + +F+++N Sbjct: 63 HLLQAICAQTEAGGYEVRTLEPDAPPEAFEFDPTITVWTIDDAERLDEWAQIAVFNLVNE 122 Query: 133 IHQYDSSLLMTARTF-PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 + + + + + P++ + DL +RL V + D + + + +R + Sbjct: 123 VRAHPHAAIAISGAAAPMAMPLR-EDLRTRLGWGLVYWLRPLSDADKVEALRQAARERGM 181 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + ++V R + L+D +D +L+R +T L ++L Sbjct: 182 QLSADVPQWLVTHSYRDMPSLMALLDALDTYSLARKRAVTLPLVRDMLA 230 >gi|157371756|ref|YP_001479745.1| DNA replication initiation factor [Serratia proteamaculans 568] gi|157323520|gb|ABV42617.1| Chromosomal replication initiator DnaA [Serratia proteamaculans 568] Length = 203 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 30/189 (15%), Positives = 76/189 (40%), Gaps = 13/189 (6%) Query: 64 SRVVILVGPSGSGKSCLANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLE 114 + G G+S L + + + + + K + ++ V ++ Sbjct: 13 GSYIYFWSREGGGRSHLLHASCAELSLRGEAVGYVPLDKRAYFVPEVLDGMEQLALVCID 72 Query: 115 DIDLLDFNDT---QLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 +I+ + ++ +F++ N I + L +T P + LPDL SRL + K+ Sbjct: 73 NIECIAGDEEWEMAIFNLYNRILETGRTRLFITGDRPPRQLNLHLPDLASRLDWGQIYKL 132 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 D+ + R + + + ++++R++R + +D++D+ +++ + Sbjct: 133 QPLSDEEKLLALQLRGKLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDHASITAQRKL 192 Query: 231 TRSLAAEVL 239 T E+L Sbjct: 193 TIPFVKEIL 201 >gi|291618377|ref|YP_003521119.1| Hda [Pantoea ananatis LMG 20103] gi|291153407|gb|ADD77991.1| Hda [Pantoea ananatis LMG 20103] Length = 249 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 36/232 (15%), Positives = 83/232 (35%), Gaps = 17/232 (7%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVH--SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80 N QL + ++ A++ S + G G+S L Sbjct: 18 NTPAQLSLPLYLPDDETFASFWPGENPSLIAAIKGALSQQH--GSYLYFWSREGGGRSHL 75 Query: 81 ANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFNDT---QLFH 128 + + + + LD ++ V +++I + + +F Sbjct: 76 LHAACAEMSARGEAVGYVPLDKRTWFVPDVLEGMEQLPLVCIDNIQCIAGEEAWEMAIFD 135 Query: 129 IINSIHQYD-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 + N I + + L +T P + LPDL SRL + ++ D+ + + Sbjct: 136 LYNRILETGNTRLFITGDRPPRQLNLHLPDLASRLDWGQIYRLQPLSDEDKLQALQLRAG 195 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + + + ++++R++R + +D++D+ ++S +T E L Sbjct: 196 LRGFELPEDVGRFLLKRLDREMRTLFDTLDRLDSASISAQRKLTIPFVKETL 247 >gi|109898802|ref|YP_662057.1| chromosomal replication initiator, DnaA [Pseudoalteromonas atlantica T6c] gi|109701083|gb|ABG41003.1| regulatory inactivation of DnaA Hda protein [Pseudoalteromonas atlantica T6c] Length = 237 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 48/237 (20%), Positives = 90/237 (37%), Gaps = 24/237 (10%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW--------PSWPSRVVILVGPSGSG 76 +QL + + D +V + RL W + + G G G Sbjct: 2 SKQLSLAVNLRDTETFDSFIVGENLHLVHRLKSLLNKTLNTKNQPW---LTFVSGDHGVG 58 Query: 77 KSCLANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFNDT--- 124 KS L K++S S + S ++ + + L+D D L + T Sbjct: 59 KSHLLYSLCHKAQSANVSAVYLSFKDKQQYSPEVLDGLEHSQLICLDDADALQDSQTWQI 118 Query: 125 QLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 +F ++N + + +++ A P S + L DL SRL ++ D+ ++ Sbjct: 119 AVFDLLNRVKELGRSHVVVCANGGPTSLNLQLADLASRLAWGVSFTLASLSDEGRCVALL 178 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 R + + +K+A Y+V +R + +DK+D L+L + +T E L Sbjct: 179 TRARQRGLVMPEKVAMYLVNHWQRDMPSLMNTLDKLDQLSLQQQRKLTIPFVKEALN 235 >gi|167586242|ref|ZP_02378630.1| hypothetical protein BuboB_12938 [Burkholderia ubonensis Bu] Length = 244 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 77/227 (33%), Gaps = 10/227 (4%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW------PSRVVILVGPSGSGKS 78 QL + D+ + + V + P R + G GSG+S Sbjct: 2 SRQLTLDLGTPPPATFDNFITGEENGELVTRLQKLDLALAAGPVPDRSFYIWGEPGSGRS 61 Query: 79 CLANIWSDKSR---STRFSNIAKSLDSILIDTRKPVLLEDIDLL-DFNDTQLFHIINSIH 134 L + + + + ++D D + D LF++ N + Sbjct: 62 HLLQALVSDASYGYARYLTPQSPLGAFTFDPRIGIYAIDDCDRMSDTQQVALFNLFNEVR 121 Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194 + SS + A DL +RL V +S P D V+ +R I + Sbjct: 122 AHPSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLSPPSDAGKIAVLKLAAKERGIALT 181 Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 +AAY++ R + L+D +D +L + +T L +L Sbjct: 182 DDIAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRRMLAR 228 >gi|332306898|ref|YP_004434749.1| DnaA regulatory inactivator Hda [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174227|gb|AEE23481.1| DnaA regulatory inactivator Hda [Glaciecola agarilytica 4H-3-7+YE-5] Length = 237 Score = 149 bits (377), Expect = 4e-34, Method: Composition-based stats. Identities = 48/237 (20%), Positives = 91/237 (38%), Gaps = 24/237 (10%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLID--------SWPSWPSRVVILVGPSGSG 76 +QL + + D +V RL W + + G G G Sbjct: 2 SKQLSLAVNLRDTETFDSFIVGENSHLVHRLKSLLNKTLNTKSQPW---LTFVSGEHGVG 58 Query: 77 KSCLANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFNDT--- 124 KS L K++S + + S ++ + + L+D+D L + T Sbjct: 59 KSHLLYSLCHKAQSANVTAVYLSFKEKQQYSPEVLDGLEHSQLICLDDVDALQDSQTWQI 118 Query: 125 QLFHIINSIHQYD-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 +F ++N + + S ++ A P+S + L DL SRL ++ D+ ++ Sbjct: 119 AVFDLLNRVKELGISHVVACANGGPMSLNLQLADLASRLAWGVSFTLASLSDEGRCVALL 178 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 R + + +K+A Y+V +R + +DK+D L+L + +T E L Sbjct: 179 TRAKQRGLVMPEKVAVYLVNHWQRDMPSLMNTLDKLDQLSLQQQRKLTIPFVKEALN 235 >gi|329119305|ref|ZP_08247992.1| DnaA regulatory inactivator Hda [Neisseria bacilliformis ATCC BAA-1200] gi|327464652|gb|EGF10950.1| DnaA regulatory inactivator Hda [Neisseria bacilliformis ATCC BAA-1200] Length = 222 Score = 149 bits (377), Expect = 4e-34, Method: Composition-based stats. Identities = 50/227 (22%), Positives = 92/227 (40%), Gaps = 13/227 (5%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 +QL F F R D L +A + V ++ R V + G +G+GKS L W+ Sbjct: 2 DQLIFDFARRDYPGFDKFL-GAANRELVFVLQQAR---ERFVYVWGAAGTGKSHLLRAWA 57 Query: 86 DKS-----RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL-FHIINSIHQYD-S 138 ++ + LD+ ++ + + ++ D L + L F I N Sbjct: 58 GQAARQGADARYIDAKTMPLDASALEA-EYLAVDQADRLKPAEQALLFEIFNRFRNSGRG 116 Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198 LL++A P V DL +R+ V I D+ + M RQ+ +D+ + Sbjct: 117 RLLLSADLPPAQLAVR-EDLRTRMGYCLVYDIKPLSDEEKIAALTGMARARQLDLDEGIF 175 Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 Y++ +R + K++D + A + +T L +LK+ + Sbjct: 176 RYLLNYWQRDMDSLVKMLDTLCLYAATTRRRMTLPLLRRLLKQQETA 222 >gi|292489006|ref|YP_003531893.1| chromosomal replication initiator protein dnaA [Erwinia amylovora CFBP1430] gi|292900140|ref|YP_003539509.1| DnaA-homolog protein [Erwinia amylovora ATCC 49946] gi|291199988|emb|CBJ47112.1| DnaA-homolog protein [Erwinia amylovora ATCC 49946] gi|291554440|emb|CBA21926.1| Chromosomal replication initiator protein dnaA [Erwinia amylovora CFBP1430] gi|312173170|emb|CBX81425.1| Chromosomal replication initiator protein dnaA [Erwinia amylovora ATCC BAA-2158] Length = 235 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 32/190 (16%), Positives = 72/190 (37%), Gaps = 13/190 (6%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLE 114 G G+S L + + + + LD ++ V ++ Sbjct: 45 GSYFYFWSREGGGRSHLLHAACAELSAKGEAVGYVPLDKRTWFVPEVLDGMEQLALVCID 104 Query: 115 DIDLLDFN---DTQLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 +I+ + + + +F + N I + LL+T P + L DL SRL + K+ Sbjct: 105 NIECIAGDSPWEMAIFDLYNRILETGKTRLLITGDRPPRQLNLKLADLASRLDWGQIYKL 164 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 D+ + + R + + + ++++R++R + +D++D ++S + Sbjct: 165 QPLCDEDKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFATLDQLDRASISAQRKL 224 Query: 231 TRSLAAEVLK 240 T E L Sbjct: 225 TIPFVKEALA 234 >gi|167563973|ref|ZP_02356889.1| hypothetical protein BoklE_15562 [Burkholderia oklahomensis EO147] gi|167571117|ref|ZP_02363991.1| hypothetical protein BoklC_14847 [Burkholderia oklahomensis C6786] Length = 241 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 90/231 (38%), Gaps = 9/231 (3%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLID---SWPSWP--SRVVILVGPSGSGKSC 79 QL + D+ + E RL + + + P R + G +GSG+S Sbjct: 4 SRQLTLDLGTPPPATFDNFYSGTNAELVTRLRELDLALAAGPVADRTFYVWGEAGSGRSH 63 Query: 80 LANIWSDKS--RSTRFSNIAKSLDSILIDTRKPV-LLEDIDLL-DFNDTQLFHIINSIHQ 135 L + R+ + LD+ + D R + ++D D L D LF++ N + Sbjct: 64 LLQALVHDTTYGHARYVSPQSGLDAFVFDPRASLYAVDDCDALNDAQQIALFNLFNEVRA 123 Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195 + + L+ A DL +RL V ++ D+ V+ +R I + Sbjct: 124 HPMTALVAAGPAAPLALDVREDLRTRLGWGLVFHLAPLTDEGKAAVLKHAAKERGIALAD 183 Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + +Y++ R + L+D +D +L + +T L +L ++ + Sbjct: 184 DVPSYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRAMLAAPERDE 234 >gi|165761334|pdb|3BOS|A Chain A, Crystal Structure Of Putative Dna Replication Regulator Hda (Yp_927791.1) From Shewanella Amazonensis Sb2b At 1.75 A Resolution gi|165761335|pdb|3BOS|B Chain B, Crystal Structure Of Putative Dna Replication Regulator Hda (Yp_927791.1) From Shewanella Amazonensis Sb2b At 1.75 A Resolution Length = 242 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 39/243 (16%), Positives = 90/243 (37%), Gaps = 18/243 (7%) Query: 14 DKQKNDQPKNKEEQLFFS--FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS-RVVILV 70 + N ++ QL P + + ++ + + S S + + L Sbjct: 1 GXRSNRVTQHPPLQLSLPVHLPDDETFTS--YYPAAGNDELIGALKSAASGDGVQAIYLW 58 Query: 71 GPSGSGKSCLANIWSDKSRST---------RFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 GP SG++ L + ++ + ++ + ++D+D + Sbjct: 59 GPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTALLEGLEQFDLICIDDVDAVAG 118 Query: 122 N---DTQLFHIINSIHQY-DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 + + +F + N + + SL+++A P G LPDL SR ++ DD Sbjct: 119 HPLWEEAIFDLYNRVAEQKRGSLIVSASASPXEAGFVLPDLVSRXHWGLTYQLQPXXDDE 178 Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237 + + A R + + + + +++ R R L ++D++D + +T E Sbjct: 179 KLAALQRRAAXRGLQLPEDVGRFLLNRXARDLRTLFDVLDRLDKASXVHQRKLTIPFVKE 238 Query: 238 VLK 240 L+ Sbjct: 239 XLR 241 >gi|134294832|ref|YP_001118567.1| DnaA regulatory inactivator Hda [Burkholderia vietnamiensis G4] gi|134137989|gb|ABO53732.1| Chromosomal replication initiator, DnaA [Burkholderia vietnamiensis G4] Length = 244 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 80/226 (35%), Gaps = 10/226 (4%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW------PSRVVILVGPSGSGKSC 79 QL + D+ +++ ++ V + P R + G GSG++ Sbjct: 3 RQLTLDLGTPPPATFDNFIMNEENDELVSRLQKLDLALAAGPVPDRSFYIWGEPGSGRTH 62 Query: 80 LANIWSDKSR---STRFSNIAKSLDSILIDTRKPVLLEDIDLL-DFNDTQLFHIINSIHQ 135 L + + + + ++D D + D LF++ N + Sbjct: 63 LLQALVSDASYGYARYLTPQSPLGAFTFDPRIGIYAIDDCDKMSDTQQVALFNLFNEVRA 122 Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195 + SS + A DL +RL V +S P D V+ +R I + Sbjct: 123 HPSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLSPPSDAGKIAVLKLAAKERGIALTD 182 Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 +AAY++ R + L+D +D +L + +T L +L Sbjct: 183 DIAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRRMLAR 228 >gi|189462574|ref|ZP_03011359.1| hypothetical protein BACCOP_03264 [Bacteroides coprocola DSM 17136] gi|189430735|gb|EDU99719.1| hypothetical protein BACCOP_03264 [Bacteroides coprocola DSM 17136] Length = 469 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 43/241 (17%), Positives = 93/241 (38%), Gaps = 29/241 (12%) Query: 33 PR-CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCL-------- 80 P + ++ + ++ E + + ++ P+R + L GPSG GK+ L Sbjct: 130 PHLNPNYNFENFIKGTSNEFSRTVAETVAQNPARTFNPLFLYGPSGVGKTHLINAIGTRI 189 Query: 81 -------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDT 124 A+++ + + +N T ++++DI Sbjct: 190 KELYPEKRVLYVSAHLFQVQYTDSVRTNHFNDF-ISFYQTIDVLIIDDIQEFAGVTKTQN 248 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 FHI N +HQ L++T+ PV L +R K V ++ PD + + ++ Sbjct: 249 TFFHIFNHLHQNGKQLILTSDRAPVMLQGMEDRLLTRFKWGLVAELEKPDIELRKNILRN 308 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 + I + + YI + + S+ E +V+ + ++ I LA ++++ + Sbjct: 309 KIRRDGLVIPESVICYIAENVNESVRELEGIVNSLLVYSIQLKREINLDLAQRIVRKAVR 368 Query: 245 C 245 C Sbjct: 369 C 369 >gi|327394769|dbj|BAK12191.1| DnaA- protein Hda [Pantoea ananatis AJ13355] Length = 258 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 36/232 (15%), Positives = 83/232 (35%), Gaps = 17/232 (7%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVH--SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80 N QL + ++ A++ S + G G+S L Sbjct: 27 NTPAQLSLPLYLPDDETFASFWPGENPSLIAAIKGALSQQH--GSYLYFWSREGGGRSHL 84 Query: 81 ANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFNDT---QLFH 128 + + + + LD ++ V +++I + + +F Sbjct: 85 LHAACAEMSARGEAVGYVPLDKRTWFVPDVLEGMEQLPLVCIDNIQCIAGEEAWEMAIFD 144 Query: 129 IINSIHQYD-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 + N I + + L +T P + LPDL SRL + ++ D+ + + Sbjct: 145 LYNRILETGNTRLFITGDRPPRQLNLHLPDLASRLDWGQIYRLQPLSDEDKLQALQLRAG 204 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + + + ++++R++R + +D++D+ ++S +T E L Sbjct: 205 LRGFELPEDVGRFLLKRLDREMRTLFDTLDRLDSASISAQRKLTIPFVKETL 256 >gi|172059739|ref|YP_001807391.1| DnaA regulatory inactivator Hda [Burkholderia ambifaria MC40-6] gi|171992256|gb|ACB63175.1| DnaA regulatory inactivator Hda [Burkholderia ambifaria MC40-6] Length = 318 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 80/227 (35%), Gaps = 10/227 (4%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW------PSRVVILVGPSGSGKS 78 QL + D+ +++ ++ + + P R + G GSG++ Sbjct: 76 SRQLTLDLGTPPPATFDNFIMNEENDELISRLQKLDLALAAGPVPDRSFYIWGEPGSGRT 135 Query: 79 CLANIWSDKSR---STRFSNIAKSLDSILIDTRKPVLLEDIDLL-DFNDTQLFHIINSIH 134 L + + + + ++D D + D LF++ N + Sbjct: 136 HLLQALVSDASYGYARYLTPQSPLGAFTFDPRIGIYAIDDCDRMSDTQQVALFNLFNEVR 195 Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194 + SS + A DL +RL V +S P D V+ +R I + Sbjct: 196 AHPSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLSPPSDAGKIAVLKLAAKERGIALT 255 Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 +AAY++ R + L+D +D +L + +T L +L Sbjct: 256 DDIAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRRMLAR 302 >gi|114332207|ref|YP_748429.1| hypothetical protein Neut_2247 [Nitrosomonas eutropha C91] gi|114309221|gb|ABI60464.1| regulatory inactivation of DnaA Hda protein [Nitrosomonas eutropha C91] Length = 221 Score = 148 bits (375), Expect = 6e-34, Method: Composition-based stats. Identities = 47/221 (21%), Positives = 95/221 (42%), Gaps = 8/221 (3%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDS--WPSWPSRVVILVGPSGSGKSCLAN- 82 QL S D+ + E+ + + + + R L G +GSGKS L Sbjct: 2 RQLLLDITEIGPPSLDNFIP-EGNEELLYTLRNLVADNRQDRFYYLWGNTGSGKSHLLQA 60 Query: 83 ---IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT-QLFHIINSIHQYDS 138 I+ ++ R+T + + ++ + T + +++I+ LD + +LF++ N I + Sbjct: 61 VTNIFMEQQRNTHYIDCNQADEIDFNLTADCIAVDNIEQLDDAEQIRLFNLYNQIRESKY 120 Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198 + + T P + PDL +RL V ++ D+ +V+ + + Sbjct: 121 GIFLAGGTRPPAQLGLRPDLTTRLGWGLVYQVHELTDEKKIEVMQDYAIRCGFELPLDVC 180 Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 Y+++ +R L + V +D L+L+R +T L E+L Sbjct: 181 NYLLKHEQRDLSSLIRQVSALDQLSLTRQRPVTLPLLRELL 221 >gi|257094035|ref|YP_003167676.1| DnaA regulatory inactivator Hda [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046559|gb|ACV35747.1| DnaA regulatory inactivator Hda [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 218 Score = 148 bits (375), Expect = 6e-34, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 87/220 (39%), Gaps = 9/220 (4%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW--PSWPSRVVILVGPSGSGKSCLANI 83 QL + S D+ V + +A+ + SW P V L G +G+GKS L Sbjct: 2 RQLILDLLPEVPPSLDNY-VTGSNAEALTGLASWLAPVNREPVFFLWGEAGAGKSHLLQA 60 Query: 84 WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN-DTQLFHIINSIHQYDSSLLM 142 S+++ + + +++I+ LD + F++IN + LL+ Sbjct: 61 ----SQASYSDARQDPGLAAVDLQDTLHAIDNIEALDASGQVAAFNLINRLRADGGRLLV 116 Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 A P+ + DL +RL + V ++ D + + R + + + Y+ Sbjct: 117 AASVPPLRLALR-EDLRTRLGSGLVYRLQPLSDPEKLAALAEQARARGLVLPAEAFNYLF 175 Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 R R + L+ +D +L IT L EVL+ + Sbjct: 176 ARAPRDMRSLTALLIAIDRYSLEHKRPITLPLLREVLQSS 215 >gi|78065321|ref|YP_368090.1| hypothetical protein Bcep18194_A3847 [Burkholderia sp. 383] gi|206561601|ref|YP_002232366.1| DnaA regulatory inactivator Hda [Burkholderia cenocepacia J2315] gi|77966066|gb|ABB07446.1| DNA replication initiation-like ATPase [Burkholderia sp. 383] gi|198037643|emb|CAR53586.1| DnaA-homolog protein Hda [Burkholderia cenocepacia J2315] Length = 244 Score = 148 bits (374), Expect = 7e-34, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 79/227 (34%), Gaps = 10/227 (4%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW------PSRVVILVGPSGSGKS 78 QL + D+ +++ ++ + + P R + G G G++ Sbjct: 2 SRQLTLDLGTPPPATFDNFIMNEENDELISRLQKLDLALAAGPVPDRSFYIWGEPGCGRT 61 Query: 79 CLANIWSDKSR---STRFSNIAKSLDSILIDTRKPVLLEDIDLL-DFNDTQLFHIINSIH 134 L + + + + ++D D + D LF++ N + Sbjct: 62 HLLQALVSDASYGYARYLTPQSPLGAFTFDPRIGIYAIDDCDRMSDTQQVALFNLFNEVR 121 Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194 + SS + A DL +RL V +S P D V+ +R I + Sbjct: 122 AHPSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLSPPSDAGKIAVLKLAAKERGIALT 181 Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 +AAY++ R + L+D +D +L + +T L +L Sbjct: 182 DDIAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRRMLAR 228 >gi|171320264|ref|ZP_02909320.1| DnaA regulatory inactivator Hda [Burkholderia ambifaria MEX-5] gi|171094493|gb|EDT39551.1| DnaA regulatory inactivator Hda [Burkholderia ambifaria MEX-5] Length = 244 Score = 148 bits (374), Expect = 7e-34, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 80/227 (35%), Gaps = 10/227 (4%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW------PSRVVILVGPSGSGKS 78 QL + D+ +++ ++ + + P R + G GSG++ Sbjct: 2 SRQLTLDLGTPPPATFDNFIMNEENDELISRLQKLDLALAAGPVPDRSFYIWGEPGSGRT 61 Query: 79 CLANIWSDKSR---STRFSNIAKSLDSILIDTRKPVLLEDIDLL-DFNDTQLFHIINSIH 134 L + + + + ++D D + D LF++ N + Sbjct: 62 HLLQALVSDASYGYARYLTPQSPLGAFTFDPRIGIYAIDDCDRMSDTQQVALFNLFNEVR 121 Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194 + SS + A DL +RL V +S P D V+ +R I + Sbjct: 122 AHPSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLSPPSDAGKIAVLKLAAKERGIALT 181 Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 +AAY++ R + L+D +D +L + +T L +L Sbjct: 182 DDIAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRRMLAR 228 >gi|170698325|ref|ZP_02889400.1| DnaA regulatory inactivator Hda [Burkholderia ambifaria IOP40-10] gi|170136744|gb|EDT04997.1| DnaA regulatory inactivator Hda [Burkholderia ambifaria IOP40-10] Length = 244 Score = 147 bits (373), Expect = 8e-34, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 80/227 (35%), Gaps = 10/227 (4%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW------PSRVVILVGPSGSGKS 78 QL + D+ +++ ++ + + P R + G GSG++ Sbjct: 2 SRQLTLDLGTPPPATFDNFIMNEENDELISRLQKLDLALAAGPVPDRSFYIWGEPGSGRT 61 Query: 79 CLANIWSDKSR---STRFSNIAKSLDSILIDTRKPVLLEDIDLL-DFNDTQLFHIINSIH 134 L + + + + ++D D + D LF++ N + Sbjct: 62 HLLQALVSDASYGYARYLTPQSPLGAFTFDPRIGIYAIDDCDRMSDTQQVALFNLFNEVR 121 Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194 + SS + A DL +RL V +S P D V+ +R I + Sbjct: 122 AHPSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLSPPSDAGKIAVLKLAAKERGIALT 181 Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 +AAY++ R + L+D +D +L + +T L +L Sbjct: 182 DDIAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRRMLAR 228 >gi|85709210|ref|ZP_01040276.1| ATPase [Erythrobacter sp. NAP1] gi|85690744|gb|EAQ30747.1| ATPase [Erythrobacter sp. NAP1] Length = 186 Score = 147 bits (373), Expect = 9e-34, Method: Composition-based stats. Identities = 56/207 (27%), Positives = 88/207 (42%), Gaps = 31/207 (14%) Query: 45 VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL 104 + +A Q V + + SWP +L GP SGKS L N + + Sbjct: 1 MGNANLQVVEALQNPVSWPFNTAVLTGPPRSGKSLLGNWAAGQG---------------- 44 Query: 105 IDTRKPVLLEDIDLLD-FNDTQLFHIINSIHQ----YDSSLLMTARTFPVSWGVCLPDLC 159 +E ID D ++ ++FH N++ + + LL+ A + P W + LPDL Sbjct: 45 --------IEVIDRADTLDEAEVFHRWNAVQEGGSRAGTKLLLIADSTP--WEISLPDLK 94 Query: 160 SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 SRL + + I PDD ++I R + + + A Y+V R RS E LV + Sbjct: 95 SRLGGSLQLAIGDPDDAMAAQLIEAHAEARGLTLAEGAADYLVPRTRRSFADIEALVRTI 154 Query: 220 DNLALSRGMGITRSLAAEVLKETQQCD 246 D ++L R T S+ L+ D Sbjct: 155 DRISLERAAPATMSVWRAALEALHGPD 181 >gi|167837743|ref|ZP_02464626.1| hypothetical protein Bpse38_14737 [Burkholderia thailandensis MSMB43] Length = 241 Score = 147 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 90/231 (38%), Gaps = 9/231 (3%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLID---SWPSWP--SRVVILVGPSGSGKSC 79 QL + D+ + E RL + + + P R + G +GSG+S Sbjct: 4 SRQLTLDLGTPPPATFDNFYSGTNAELVTRLRELDLALAAGPVADRTFYVWGEAGSGRSH 63 Query: 80 LANIWSDKS--RSTRFSNIAKSLDSILIDTRKPV-LLEDIDLL-DFNDTQLFHIINSIHQ 135 L + R+ + LD++ D R + ++D D L D LF++ N + Sbjct: 64 LLQALVHDTTYGHARYVSPQGGLDALAFDPRVSLYAVDDCDALNDAQQIALFNLFNEVRA 123 Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195 + + L+ A DL +RL V ++ D+ V+ +R I + Sbjct: 124 HPMTALVAAGPAAPLALDVREDLRTRLGWGLVFHLTPLTDEGKVAVLKHAAKERGIALAD 183 Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + +Y++ R + L+D +D +L + +T L +L ++ + Sbjct: 184 DVPSYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRAMLAAPERDE 234 >gi|325297173|ref|YP_004257090.1| Chromosomal replication initiator protein dnaA [Bacteroides salanitronis DSM 18170] gi|324316726|gb|ADY34617.1| Chromosomal replication initiator protein dnaA [Bacteroides salanitronis DSM 18170] Length = 469 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 42/241 (17%), Positives = 92/241 (38%), Gaps = 29/241 (12%) Query: 33 PR-CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCL-------- 80 P + ++ + ++ E ++ + ++ P+R + L GPSG GK+ L Sbjct: 130 PHLNPNYNFENFIKGTSNEFSLTVAETVAQNPARTFNPLFLYGPSGVGKTHLINAIGTRI 189 Query: 81 -------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDT 124 A+++ + + +N ++++DI Sbjct: 190 KELYPEKRVLYISAHLFQVQYTDSIRTNHFNDF-ITFYQQIDVLIIDDIQEFAGVTKTQN 248 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 FHI N +HQ L++T+ PV L +R K + ++ PD D + ++ Sbjct: 249 TFFHIFNHLHQNGKQLILTSDRAPVMLQGIEDRLLTRFKWGLIAELERPDIDLRKNILRS 308 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 + I + YI + + S+ E +V+ + ++ I LA ++++ + Sbjct: 309 KIRRDGLNIPDAVINYIAENVNESVRELEGIVNSLLVYSIQLKREINLDLAQHIVQKAVR 368 Query: 245 C 245 C Sbjct: 369 C 369 >gi|330815627|ref|YP_004359332.1| Chromosomal replication initiator protein DnaA [Burkholderia gladioli BSR3] gi|327368020|gb|AEA59376.1| Chromosomal replication initiator protein DnaA [Burkholderia gladioli BSR3] Length = 241 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 52/229 (22%), Positives = 94/229 (41%), Gaps = 11/229 (4%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRL--ID-SWPSWP--SRVVILVGPSGSGKSCL 80 QL + ++ + + E RL +D + + P R + G +GSG+S L Sbjct: 5 RQLTLDLGTPPPRTFENFTIGANDELVSRLRRLDLALAAGPVADRSFYVWGEAGSGRSHL 64 Query: 81 AN--IWSDKSRSTRFSNIAKSLDSILIDTRKPV-LLEDIDLLDFNDT-QLFHIINSIHQY 136 ++ S R+ L +I D R + ++DID + N LF++ N + + Sbjct: 65 LQALVYDTSYGSARYLTPQSPLGAIAFDPRVSLYAVDDIDAMSDNQQIALFNLFNEVRAH 124 Query: 137 DSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195 SS + P++ V DL +RL V ++ D V + DR I I Sbjct: 125 PSSAFVGAGPAAPLALDVR-EDLRTRLGWGLVFHLAPLSDADKAAVFKRAARDRGIAIAD 183 Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 + AY++ R + L+D +D +L + +T L +L ++ Sbjct: 184 DVPAYLLTHYRRDMPSLMALLDALDRFSLEQKRAVTLPLLRTLLATLER 232 >gi|238026308|ref|YP_002910539.1| DnaA regulatory inactivator Hda [Burkholderia glumae BGR1] gi|237875502|gb|ACR27835.1| Chromosomal replication initiator protein DnaA [Burkholderia glumae BGR1] Length = 334 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 51/229 (22%), Positives = 91/229 (39%), Gaps = 11/229 (4%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRL--ID-SWPSWP--SRVVILVGPSGSGKSCL 80 QL + ++ + E RL +D + + P R + G +GSG+S L Sbjct: 98 RQLTLDLGTPPPATFENFTIGPNDELVSRLRRLDLALAAGPVADRSFYVWGEAGSGRSHL 157 Query: 81 ANIWSDKS--RSTRFSNIAKSLDSILIDTRKPV-LLEDIDLL-DFNDTQLFHIINSIHQY 136 + S R+ L +I D R + ++DID + D LF++ N + + Sbjct: 158 LQALVHDTSYGSARYLTPQSPLGAIAFDPRVSLYAVDDIDAMSDTQQIALFNLFNEVRAH 217 Query: 137 DSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195 SS + P++ V DL +RL V ++ D V + R I I Sbjct: 218 PSSAFVGAGPAAPLALDVR-EDLRTRLGWGLVFHLAPLSDADKAVVFKQAAKARGIAIAD 276 Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 + AY++ R + L+D +D +L + +T L +L ++ Sbjct: 277 DVPAYLLTHYRRDMPSLMALLDALDRFSLEQKRAVTLPLLRALLTALER 325 >gi|90417462|ref|ZP_01225385.1| DnaA family protein [marine gamma proteobacterium HTCC2207] gi|90330703|gb|EAS45982.1| DnaA family protein [marine gamma proteobacterium HTCC2207] Length = 234 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 45/234 (19%), Positives = 95/234 (40%), Gaps = 20/234 (8%) Query: 23 NKEEQLFFSFPRCLGISRDDLLV--HSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80 N+ +QL + + D+ + A L+ + + G SG+G S L Sbjct: 2 NEFQQLSLAIKLDNQATFDNFYAPTGTPQHLAKMLL---QDEGKQYAYVCGSSGTGLSHL 58 Query: 81 ANIWSDKS------RSTRFSNIAKSLDSIL------IDTRKPVLLEDIDLLDFNDTQ--- 125 + + + + + D +++ V L+D+D + + Sbjct: 59 MQAVCQQHSTGLNNGAAVYLPLKELCDYPAGQVLEGLESSDLVCLDDLDQVAGREEWQAP 118 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 LF+ N + + LL+TA T P V L DL SRLK+ +++ D L +++ Sbjct: 119 LFNFFNRCSESGTRLLITAHTLPDYLEVLLDDLLSRLKSGISLQLMDYKDADLRRLLQHR 178 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + +++ ++A +++ R+ R+ ++K+D ++L +T VL Sbjct: 179 ASGLGLYLSDEVARFLLHRLPRNSHLLMDALEKLDAVSLREQRRLTLPFVKTVL 232 >gi|224027038|ref|ZP_03645404.1| hypothetical protein BACCOPRO_03797 [Bacteroides coprophilus DSM 18228] gi|224020274|gb|EEF78272.1| hypothetical protein BACCOPRO_03797 [Bacteroides coprophilus DSM 18228] Length = 469 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 45/261 (17%), Positives = 99/261 (37%), Gaps = 36/261 (13%) Query: 13 PDKQKNDQPKNKEEQLFFSFPR-CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VI 68 P+ + P++ P + ++ + ++ E + + ++ P+R + Sbjct: 118 PNPLQAAAPQD------LD-PHLNPNYNFENFIKGTSNEFSRTVAETVAQNPARTFNPLF 170 Query: 69 LVGPSGSGKSCL---------------------ANIWSDKSRSTRFSNIAKSLDSILIDT 107 L GPSG GK+ L A+++ + + +N T Sbjct: 171 LYGPSGVGKTHLINAIGTRIKELYPEKRVLYVSAHLFQVQYTDSVRTNHFNDF-ISFYQT 229 Query: 108 RKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164 ++++DI FHI N +HQ L++T+ PV L +R K Sbjct: 230 IDVLIIDDIQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVMLQGMEDRLLTRFKW 289 Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 V ++ PD + + ++ + I + + YI + + S+ E +V+ + ++ Sbjct: 290 GLVAELEKPDIELRKNILRNKIRRDGLTIPESVICYIAENVNESVRELEGIVNSLLAQSI 349 Query: 225 SRGMGITRSLAAEVLKETQQC 245 I LA ++++ +C Sbjct: 350 LLKREINLDLAQRIVRKAVRC 370 >gi|332974687|gb|EGK11604.1| DNA replication initiation protein A family protein [Kingella kingae ATCC 23330] Length = 264 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 90/225 (40%), Gaps = 11/225 (4%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL F F R D L+ A LI + + + G GSGKS + W Sbjct: 45 QLAFDFD-EPAYPRFDKLLGHANA---ELIYILQQEHDQFLYIWGEQGSGKSHILQAWVG 100 Query: 87 KSRSTRFSNIAKSLDSILIDTRKP----VLLEDIDLLDFNDTQ-LFHIINSIHQYDS-SL 140 ++ + + S + V ++ ++ L+ + LF++ N L Sbjct: 101 QAMQAGHRALYIDVGSTPLTDAAADYDFVAIDQVEKLNAQEQATLFYVFNCFRNSKKGHL 160 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L++A P + DL +R+ ++ + + + M RQ+ ID + Y Sbjct: 161 LLSADVAPSKLQLR-EDLRTRMSFCLAYEVKSLSQEEKIEALTNMAHARQLNIDPAIYHY 219 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 +++ + L + + + N ++++G IT L ++LK+ +Q Sbjct: 220 LLEHWRQDLHSLLSMFNDLANYSITQGKPITLPLLRKLLKQQEQA 264 >gi|312795199|ref|YP_004028121.1| DnaA-related protein [Burkholderia rhizoxinica HKI 454] gi|312166974|emb|CBW73977.1| DnaA-related protein [Burkholderia rhizoxinica HKI 454] Length = 274 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 84/227 (37%), Gaps = 11/227 (4%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW-----PSRVVILVGPSGSGKSCL 80 QL + ++ + E RL + R + G +GSG+S L Sbjct: 47 RQLTLDLGTPPPKTFENFFAGAHAELVARLAGLDAALAAGPVADRTFYVWGDAGSGRSHL 106 Query: 81 ANIW---SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD-FNDTQLFHIINSIHQY 136 + R+ + ++ ++D+D L LF++ N + Sbjct: 107 LQALVAGASSGRARFVAPLSPLSAFGYDPRVAIYAVDDVDQLADAQQIALFNLFNEVRAS 166 Query: 137 -DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195 S+L+ T P+ V DL +RL V + D+ V+ +R + + Sbjct: 167 PGSALVATGNAAPLHLAVR-EDLRTRLGWGLVFHLGALTDEGKAAVLKHAARERGLTLAD 225 Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + A+++ R + +++D++D AL +T L +L ++ Sbjct: 226 DVPAWLLTHYHRDMPSLMRVLDELDRFALEHKRAVTLPLLRAMLADS 272 >gi|118594068|ref|ZP_01551415.1| hypothetical protein MB2181_00330 [Methylophilales bacterium HTCC2181] gi|118439846|gb|EAV46473.1| hypothetical protein MB2181_00330 [Methylophilales bacterium HTCC2181] Length = 197 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 45/218 (20%), Positives = 88/218 (40%), Gaps = 25/218 (11%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-VILVGPSGSGKSCLANIW 84 +QL + + + +V + + I+ + + G SGSGKS LA+ Sbjct: 2 DQLLLNIHPVPKKTMGNFIVGK-NAECLNSIERLIKSTDHFFIYIWGESGSGKSHLASAL 60 Query: 85 SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT-QLFHIINSIHQYDSSLLMT 143 +K ++ED++ D + +LF++ N + + L++T Sbjct: 61 REK---------------------NVKVVEDVENFDNDQQIELFNLFNKSKKLRNKLVIT 99 Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203 P + PDL SRL V +I D+ + + + + D+K+ +Y + Sbjct: 100 GNDAPNKMNLR-PDLASRLSWELVYQIKPLTDEEKKVALEYYAMQKGMSFDRKIISYCMA 158 Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++R L +D +D +L IT L ++LK+ Sbjct: 159 NLKRDLPSLISTLDALDEWSLKAKRPITIPLLIQLLKK 196 >gi|320539564|ref|ZP_08039231.1| ATPase regulatory factor involved in DnaA inactivation [Serratia symbiotica str. Tucson] gi|320030417|gb|EFW12429.1| ATPase regulatory factor involved in DnaA inactivation [Serratia symbiotica str. Tucson] Length = 225 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 29/189 (15%), Positives = 75/189 (39%), Gaps = 13/189 (6%) Query: 64 SRVVILVGPSGSGKSCLANIWSDK----SRSTRFSNIAKSLDSIL-----IDTRKPVLLE 114 + G G+S L + + + + + K + ++ V ++ Sbjct: 35 GSYIYFWSREGGGRSHLLHAACAELSQHGEAVGYVPLDKRTYFMPEVLDGMEQLALVCID 94 Query: 115 DIDLLDFNDT---QLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 +I+ + ++ +F++ N I + L +T P + LPDL SRL + K+ Sbjct: 95 NIEFIAGDEAWEMAIFNLYNRILETGHTRLFITGDRPPRQLNLYLPDLASRLDWGQIYKL 154 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 D+ + R + + + ++++R++R + ++++D+ +++ + Sbjct: 155 QPLSDEEKLLALQLRGKLRGFELPEDVGRFLLKRLDREMRTLFMTLNQLDHASITAQRKL 214 Query: 231 TRSLAAEVL 239 T E L Sbjct: 215 TIPFVKETL 223 >gi|239814473|ref|YP_002943383.1| DnaA regulatory inactivator Hda [Variovorax paradoxus S110] gi|239801050|gb|ACS18117.1| DnaA regulatory inactivator Hda [Variovorax paradoxus S110] Length = 233 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 78/228 (34%), Gaps = 14/228 (6%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVV-------ILVGPSGSGKS 78 +QL G S D E A+R + W V L G GSGK+ Sbjct: 7 KQLALDIGIATGPSFDAFFAGP-NEAALRHLQLWVGGAGSAVPHSPVPTYLWGEGGSGKT 65 Query: 79 CLAN----IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL-LDFNDTQLFHIINSI 133 L ++ S + + + VLL+D+ L F+ + Sbjct: 66 HLLESVRVALREQGASVGWLHAGVLEPPEFDERWGAVLLDDVHLYTAVQQHAAFNWFVNA 125 Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193 ++ P + DL +RL V + + + V+ + R + + Sbjct: 126 QTLQRGVVAAGALPPADLPLR-EDLRTRLGWGHVFHLQVLSESERRAVLRQAADTRGVML 184 Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++ Y++ R R L +L+ ++D AL IT L +L+ Sbjct: 185 SDEVLDYMLHRFSRDLGSLMELLTQLDGYALQTQRAITIPLIRSMLEN 232 >gi|119899428|ref|YP_934641.1| DnaA regulatory inactivator Hda [Azoarcus sp. BH72] gi|119671841|emb|CAL95755.1| putative chromosomal replication initiator protein [Azoarcus sp. BH72] Length = 229 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 94/225 (41%), Gaps = 10/225 (4%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLI-----DSWPSWPSRVVILVGPSGSGKSCL 80 +QL S D+ + + E L + + P+R + L G GSG+S L Sbjct: 2 KQLVLDIRPDAPPSLDNFVAGANAELLAALSLLGSAEQAAALPARHLYLWGARGSGRSHL 61 Query: 81 ANIWSDKSRSTR---FSNIAKSLDSILIDTRKPVLLEDIDLL-DFNDTQLFHIINSIHQY 136 + + R + A D++ V ++DID L D LF+ N Sbjct: 62 LRAATAAAGGQRPVHLLDAATIGDTLPDTADALVAIDDIDQLGDAAQIALFNAFNRARTN 121 Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196 +LL+ P+ + DL +R+ + + ++ DDD ++V + R + + + Sbjct: 122 GQALLLAGPCAPLELTLR-EDLRTRIGQSLIYEVQSLDDDSRAAILVALAERRGLRLADE 180 Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + ++++ R L +++ +D +L R +T L E++++ Sbjct: 181 VIDFLLRHGRRDLPSLLAVLEALDAASLERKRAVTLPLLREMMQQ 225 >gi|304312877|ref|YP_003812475.1| DnaA family protein [gamma proteobacterium HdN1] gi|301798610|emb|CBL46840.1| DnaA family protein [gamma proteobacterium HdN1] Length = 230 Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 84/228 (36%), Gaps = 14/228 (6%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSR-VVILVGPSGSGKSCLANIW 84 QL F + +D V Q V + P +++ G +G+GK+ LAN Sbjct: 3 RQLSLDFGQPASGRFEDFFVGE-NAQVVERLRQLPCANIPAFLVVWGGTGAGKTHLANAL 61 Query: 85 S-----DKSRSTRFSNIAKSLDSILIDTRKPVLLE-------DIDLLDFNDTQLFHIINS 132 + R+ K+ + + + LFH+ N Sbjct: 62 CDAFSVAQRRAILIDGQQKAQLFPAMLDGLAAVDLVVVDDLDQFAGDAVWEEALFHLYNK 121 Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 + +SLL+T P+ L DL SRL A ++ + + + +M R Sbjct: 122 MVVSKASLLVTLSCPPMQAPFRLADLKSRLGACETYRVVPLSHEDKREWMRQMARLRSFE 181 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 ++ + YI+ R R ++++ +D +L+ ++ +V+K Sbjct: 182 LEAEWCDYILNRAARDPASLVQIINTLDAESLAAKRMMSLPFIKQVMK 229 >gi|161525794|ref|YP_001580806.1| DnaA regulatory inactivator Hda [Burkholderia multivorans ATCC 17616] gi|160343223|gb|ABX16309.1| DnaA regulatory inactivator Hda [Burkholderia multivorans ATCC 17616] Length = 315 Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 79/225 (35%), Gaps = 9/225 (4%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRL--IDSWPSW---PSRVVILVGPSGSGKSCL 80 QL + D+ + E RL +D + P R + G GSG+S L Sbjct: 75 RQLTLDLGTPPPATFDNFITGENGELVTRLQKLDLALAAGPVPDRSFYIWGEPGSGRSHL 134 Query: 81 ANIWSDKSR---STRFSNIAKSLDSILIDTRKPVLLEDIDLL-DFNDTQLFHIINSIHQY 136 + + + + ++D D + D LF++ N + + Sbjct: 135 LQALVSDASYGYARYLTPQSPLGAFTFDPRIGIYAIDDCDRMSDTQQVALFNLFNEVRAH 194 Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196 SS + A DL +RL V +S D V+ +R I + Sbjct: 195 PSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLSPLSDAGKIDVLRLAAKERGITLTDD 254 Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 +AAY++ R + L+D +D +L + +T L +L Sbjct: 255 VAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRRMLAR 299 >gi|253989269|ref|YP_003040625.1| DNA replication initiation factor [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780719|emb|CAQ83881.1| dnaa-homolog protein hda [Photorhabdus asymbiotica] Length = 244 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 34/232 (14%), Positives = 84/232 (36%), Gaps = 15/232 (6%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW-PSRVVILVGPSGSGKSCLA 81 N QL + + I + + G+S L Sbjct: 13 NTPSQLSLPLYLPDDETFASFFPGE-NATLLAAIKLAINQQHGSYIYFWSRESGGRSHLL 71 Query: 82 NIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHI 129 + K + + + K I ++ V +++I+ + ++ +F++ Sbjct: 72 HAACAELSLKDEAVGYVPLDKRAYFIPEVLDGMEHLSLVCIDNIECIAGDEEWEMAIFNL 131 Query: 130 INSIHQYDSS-LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N I + + LL++ P + LPDL SRL + K+ DD + + Sbjct: 132 YNRILEIGRTCLLISGDRPPRQIDLMLPDLASRLDWGQIYKLQPLSDDEKLQALQLRAKL 191 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 R + + + ++++R++R + ++++D+ ++ +T ++L Sbjct: 192 RGFELPEDVGRFLLKRLDREMRTLFMTLNQLDHASIVAQRKLTIPFVKDILH 243 >gi|237746881|ref|ZP_04577361.1| DnaA regulatory inactivator Hda [Oxalobacter formigenes HOxBLS] gi|229378232|gb|EEO28323.1| DnaA regulatory inactivator Hda [Oxalobacter formigenes HOxBLS] Length = 225 Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 82/223 (36%), Gaps = 4/223 (1%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLID--SWPSWPSRVVILVGPSGSGKSCLANI 83 +QL + + + + E+A+ L+ + R V L G + GK+ L Sbjct: 2 QQLLLNLDTASPPALETFVPGQ-NEEALHLLHLIAARQSRDRFVYLWGDAAVGKTHLLLA 60 Query: 84 WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN-DTQLFHIINSIHQYDSSLLM 142 + + S S + L++D D L F + N + + + ++ Sbjct: 61 MARFAPSRYLSARSPLAAFDYDSGISLYLIDDCDKLSPEKQIAAFDLFNQVRENGRACMI 120 Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 TA + DL SRL V +I D+ + + R + + Y++ Sbjct: 121 TAGSSTPLALTLRDDLKSRLCWGLVYQIKGLTDEEKIAALTEQAKSRGFTLSPGVLPYLI 180 Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 +R + ++D +D +L IT L ++L + Q+ Sbjct: 181 THYQRDMHSLSMILDALDRYSLQTKRTITLPLLYDLLHKKQEP 223 >gi|257464853|ref|ZP_05629224.1| DNA replication initiation factor [Actinobacillus minor 202] gi|257450513|gb|EEV24556.1| DNA replication initiation factor [Actinobacillus minor 202] Length = 236 Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 45/234 (19%), Positives = 93/234 (39%), Gaps = 20/234 (8%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 QL + + D+ ++ L ++ + G GKS L S Sbjct: 1 MQLLLPIYQVDDETFDNFYAENSPILLDSLQQNFSDVHQPFFYIWGGKSCGKSHLLKAVS 60 Query: 86 ------DKSRSTRFSNIAKSLDSILIDTRK---PVLLEDIDLLDFNDT---QLFHIINSI 133 +S S + + +++D + L+DI + N+ +F + N I Sbjct: 61 NYYLQNQRSSSYIPLSKSHYFSPMVLDNAAQLDVICLDDIQAIAGNEEWEVAIFDLFNQI 120 Query: 134 HQ--------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 + + + LL++A P + LPDL SRL V ++ +D+ +K++ Sbjct: 121 REQQSLFGNGHKTLLLISADCPPHELKIKLPDLRSRLIWGEVYHLNHLNDEQKQKILKTS 180 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + I + ++AA++++R+ L ++++D +L +T EVL Sbjct: 181 AYQKGIDLPDEVAAFLLKRLGNDLQVLLTELERLDRASLQAQRNLTVPFVKEVL 234 >gi|254253159|ref|ZP_04946477.1| hypothetical protein BDAG_02411 [Burkholderia dolosa AUO158] gi|124895768|gb|EAY69648.1| hypothetical protein BDAG_02411 [Burkholderia dolosa AUO158] Length = 259 Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 80/226 (35%), Gaps = 9/226 (3%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRL--IDSWPSW---PSRVVILVGPSGSGKSC 79 QL + ++ + E RL +D + P R + G GSG+S Sbjct: 18 SRQLTLDLGTPPPATFENFITGENGELVTRLQKLDLALAAGPVPDRSFYIWGEPGSGRSH 77 Query: 80 LANIWSDKSR---STRFSNIAKSLDSILIDTRKPVLLEDIDLL-DFNDTQLFHIINSIHQ 135 L + + + + ++D D + D LF++ N + Sbjct: 78 LLQALVSDASYGYARYLTPQSPLGAFTFDPRIGIYAIDDCDRMSDAQQVALFNLFNEVRA 137 Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195 + SS + A DL +RL V +S P D V+ +R I + Sbjct: 138 HPSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLSPPSDAGKIDVLKLAAKERGIALTD 197 Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 +AAY++ R + L+D +D +L + +T L +L Sbjct: 198 DIAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRRMLAR 243 >gi|325524974|gb|EGD02898.1| DnaA regulatory inactivator Hda [Burkholderia sp. TJI49] Length = 244 Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 80/225 (35%), Gaps = 9/225 (4%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRL--IDSWPSW---PSRVVILVGPSGSGKSCL 80 QL + D+ + E RL +D + P R + G GSG+S L Sbjct: 4 RQLTLDLGTPPPATFDNFITGENGELVTRLQKLDLALAAGPVPDRSFYIWGEPGSGRSHL 63 Query: 81 ANIWSDKSR---STRFSNIAKSLDSILIDTRKPVLLEDIDLL-DFNDTQLFHIINSIHQY 136 + + + + ++D D + D LF++ N + + Sbjct: 64 LQALVSDASYGYARYLTPQSPLGAFTFDPRIGIYAIDDCDRMSDTQQVALFNLFNEVRAH 123 Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196 SS + A DL +RL V +S P D V+ +R I + Sbjct: 124 PSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLSPPSDAGKIDVLKLAAKERGIALTDD 183 Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 +AAY++ R + L+D +D +L + +T L +L Sbjct: 184 IAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRRMLAR 228 >gi|240949838|ref|ZP_04754164.1| DNA replication initiation factor [Actinobacillus minor NM305] gi|240295692|gb|EER46394.1| DNA replication initiation factor [Actinobacillus minor NM305] Length = 236 Score = 145 bits (367), Expect = 5e-33, Method: Composition-based stats. Identities = 45/234 (19%), Positives = 93/234 (39%), Gaps = 20/234 (8%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 QL + + D+ ++ L ++ + G GKS L S Sbjct: 1 MQLLLPIYQVDDETFDNFYAENSPILLDSLQQNFSDVHQPFFYIWGGKSCGKSHLLKAVS 60 Query: 86 ------DKSRSTRFSNIAKSLDSILIDTRK---PVLLEDIDLLDFNDT---QLFHIINSI 133 +S S + + +++D + L+DI + N+ +F + N I Sbjct: 61 NYYLQNQRSSSYIPLSKSHYFSPMVLDNAAQLDVICLDDIQAIAGNEEWEVAIFDLFNQI 120 Query: 134 HQ--------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 + + + LL++A P + LPDL SRL V ++ +D+ +K++ Sbjct: 121 REQQSLFGNGHKTLLLISADCPPHELKIKLPDLRSRLIWGEVYHLNHLNDEQKQKILKTS 180 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + I + ++AA++++R+ L ++++D +L +T EVL Sbjct: 181 AYQKGIDLPDEVAAFLLKRLGSDLQVLLTELERLDRASLQAQRNLTVPFVKEVL 234 >gi|291613412|ref|YP_003523569.1| DnaA regulatory inactivator Hda [Sideroxydans lithotrophicus ES-1] gi|291583524|gb|ADE11182.1| DnaA regulatory inactivator Hda [Sideroxydans lithotrophicus ES-1] Length = 217 Score = 145 bits (367), Expect = 5e-33, Method: Composition-based stats. Identities = 42/210 (20%), Positives = 84/210 (40%), Gaps = 15/210 (7%) Query: 41 DDLLVH------SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 ++ +V SA+ A+ R++ + G +G GKS L + + ++ S Sbjct: 14 ENFVVGRNVELLSALRHALAGTQG-----ERMLYVWGDAGGGKSHLLQASAGLALASGQS 68 Query: 95 NIAKSLDSILIDTRKPVLLEDIDLLDFN-DTQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 I + + + V ++D++ LD LF + N + LL+ R P + Sbjct: 69 AICTC--GAVPEAAQVVAVDDVEKLDDEAQVALFALYNRQRENGGMLLVGGRQAPAFLSL 126 Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213 DL +RL V ++ +D + + + R + ++ Y+++ R L Sbjct: 127 R-EDLRTRLGWGLVYQVHALNDTEKAQALEQHAMARGFELTTEVTTYLLRHGRRDLPALL 185 Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 +D +D L L + L EV++ Q Sbjct: 186 ATLDALDELCLRLKRAASVPLLKEVMRNDQ 215 >gi|237653423|ref|YP_002889737.1| DnaA regulatory inactivator Hda [Thauera sp. MZ1T] gi|237624670|gb|ACR01360.1| DnaA regulatory inactivator Hda [Thauera sp. MZ1T] Length = 230 Score = 145 bits (366), Expect = 7e-33, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 92/227 (40%), Gaps = 13/227 (5%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPS------WPSRVVILVGPSGSGKSC 79 +QL + ++ V A + V + S P+R + L G GSG+S Sbjct: 2 KQLVLDIRPDAPPTLENF-VAGANAELVATVSLLASPATAEQLPARHIYLWGAPGSGRSH 60 Query: 80 LANIWSDKSRS----TRFSNIAKSLDSILIDTRKPVLLEDIDLL-DFNDTQLFHIINSIH 134 L D +R+ A D + + ++D D L LF+ N Sbjct: 61 LLRAAVDAARAAGRPAHLLAAATVEDHLPETPGALLAIDDADQLGAAAQIALFNAFNRAR 120 Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194 SLL+ P+ + DL +R+ + + ++ DDD +++ + A R + + Sbjct: 121 ANGQSLLLCGPAAPLGLALR-EDLRTRIGQSLIYEVKPLDDDARAEILTTLAARRGLRLA 179 Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++ ++++ R L +++D +D +L IT L +++++ Sbjct: 180 DEVVDFLLRHGRRELSSLREVLDALDRASLEHKRPITLPLLRDMIQQ 226 >gi|189349485|ref|YP_001945113.1| DnaA regulatory inactivator Hda [Burkholderia multivorans ATCC 17616] gi|189333507|dbj|BAG42577.1| similar to chromosomal replication initiator protein DnaA [Burkholderia multivorans ATCC 17616] Length = 244 Score = 145 bits (366), Expect = 7e-33, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 79/225 (35%), Gaps = 9/225 (4%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRL--IDSWPSW---PSRVVILVGPSGSGKSCL 80 QL + D+ + E RL +D + P R + G GSG+S L Sbjct: 4 RQLTLDLGTPPPATFDNFITGENGELVTRLQKLDLALAAGPVPDRSFYIWGEPGSGRSHL 63 Query: 81 ANIWSDKSR---STRFSNIAKSLDSILIDTRKPVLLEDIDLL-DFNDTQLFHIINSIHQY 136 + + + + ++D D + D LF++ N + + Sbjct: 64 LQALVSDASYGYARYLTPQSPLGAFTFDPRIGIYAIDDCDRMSDTQQVALFNLFNEVRAH 123 Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196 SS + A DL +RL V +S D V+ +R I + Sbjct: 124 PSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLSPLSDAGKIDVLRLAAKERGITLTDD 183 Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 +AAY++ R + L+D +D +L + +T L +L Sbjct: 184 VAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRRMLAR 228 >gi|332526338|ref|ZP_08402464.1| regulatory inactivation of DnaA Hda protein [Rubrivivax benzoatilyticus JA2] gi|332110474|gb|EGJ10797.1| regulatory inactivation of DnaA Hda protein [Rubrivivax benzoatilyticus JA2] Length = 226 Score = 144 bits (365), Expect = 8e-33, Method: Composition-based stats. Identities = 46/226 (20%), Positives = 84/226 (37%), Gaps = 8/226 (3%) Query: 26 EQLFFSFPRCLGISRDDLLV-HSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL---- 80 +Q+ + + + L A +A+ + P P+ V L GPSGSGK+ L Sbjct: 2 KQIPLAIGFDPLATFESFLPGSEANLRALEHLRRLPM-PTAPVYLWGPSGSGKTHLLRGL 60 Query: 81 ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL-DFNDTQLFHIINSIHQYDSS 139 A+ + + + ++ L V+++ D L F + Sbjct: 61 AHACQQAGQRVGWFDPSRPCPWELAADWSLVVIDRCDELDAAGQQSAFTLFVEAATEGVQ 120 Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199 + R PV + DL +RL V + + + + R I + ++ Sbjct: 121 MACAGRLPPVDLPLR-DDLRTRLGWGPVFAMQPLGESETRAALRRESDRRGIRLTDEVMD 179 Query: 200 YIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 +++ R R L L+D++D +LSR IT L +L E Sbjct: 180 HLLTRFPRDLKHLMALLDRLDEFSLSRSRTITVPLVRAMLAEEGDP 225 >gi|221200988|ref|ZP_03574028.1| DnaA regulatory inactivator Hda [Burkholderia multivorans CGD2M] gi|221206560|ref|ZP_03579573.1| DnaA regulatory inactivator Hda [Burkholderia multivorans CGD2] gi|221214417|ref|ZP_03587388.1| DnaA regulatory inactivator Hda [Burkholderia multivorans CGD1] gi|221165674|gb|EED98149.1| DnaA regulatory inactivator Hda [Burkholderia multivorans CGD1] gi|221173869|gb|EEE06303.1| DnaA regulatory inactivator Hda [Burkholderia multivorans CGD2] gi|221178838|gb|EEE11245.1| DnaA regulatory inactivator Hda [Burkholderia multivorans CGD2M] Length = 244 Score = 144 bits (365), Expect = 9e-33, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 80/225 (35%), Gaps = 9/225 (4%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRL--IDSWPSW---PSRVVILVGPSGSGKSCL 80 QL + D+ + E RL +D + P R + G GSG+S L Sbjct: 4 RQLTLDLGTPPPATFDNFITGENGELVTRLQKLDLALAAGPVPDRSFYIWGEPGSGRSHL 63 Query: 81 ANIWSDKSR---STRFSNIAKSLDSILIDTRKPVLLEDIDLL-DFNDTQLFHIINSIHQY 136 + + + + ++D D + D LF++ N + + Sbjct: 64 LQALVSDASYGYARYLTPQSPLGAFAFDPRIGIYAIDDCDRMSDTQQVALFNLFNEVRAH 123 Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196 SS + A DL +RL V +S D +V+ +R I + Sbjct: 124 PSSAFVAAGPAAPLALDVREDLRTRLGWGLVFHLSPLSDAGKIEVLRLAAKERGITLTDD 183 Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 +AAY++ R + L+D +D +L + +T L +L Sbjct: 184 VAAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRRMLAR 228 >gi|254448991|ref|ZP_05062445.1| DnaA regulatory inactivator Hda [gamma proteobacterium HTCC5015] gi|198261385|gb|EDY85676.1| DnaA regulatory inactivator Hda [gamma proteobacterium HTCC5015] Length = 234 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 41/205 (20%), Positives = 80/205 (39%), Gaps = 13/205 (6%) Query: 49 IEQAVRLID-SWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL--- 104 A+ L + + R L G GK+ L ++ S L ++ Sbjct: 28 NCLALELCQQAARNEGERQCFLYGDEAVGKTHLLQAACAEAALNGLSASFIPLREMVTYG 87 Query: 105 ------IDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 ++ ++ V ++DI ++ + +F +IN + D+ LLM++ S L Sbjct: 88 CGVLQGLEQQQLVCIDDIHVIAGQAGWEEAVFDLINRCREQDTRLLMSSSIPASSHAFEL 147 Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215 DL SRL V+++ D + + R FI ++ Y+ RS+ F Sbjct: 148 GDLRSRLAWGPVLQLHELQQDEKWQWLQARAEYRGFFISEESGQYLFAHYPRSMAFLNYA 207 Query: 216 VDKMDNLALSRGMGITRSLAAEVLK 240 ++++D + L +T L + L Sbjct: 208 LEELDRITLQTQRKVTVPLLKQELN 232 >gi|225023936|ref|ZP_03713128.1| hypothetical protein EIKCOROL_00802 [Eikenella corrodens ATCC 23834] gi|224942961|gb|EEG24170.1| hypothetical protein EIKCOROL_00802 [Eikenella corrodens ATCC 23834] Length = 219 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 55/211 (26%), Positives = 85/211 (40%), Gaps = 12/211 (5%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL FP S D L L+ V + GP+G+GKS L W+ Sbjct: 3 QLILDFPAAPP-SFDTFL-GQGNR---ELLQVLREQHEPFVYVWGPAGAGKSHLLQAWAA 57 Query: 87 KSR----STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN-DTQLFHIINSIHQY-DSSL 140 ++ S R+ N A + + L+ ID LD + +LF+ N I Q +L Sbjct: 58 QAEAAGLSARYLNAANEPLHEMPPAGCHLALDQIDSLDADGQAELFNFCNHIRQSRQGAL 117 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L+ A P V DL +R+ V +I D+ +V+ RQI I + Y Sbjct: 118 LIGASVPPPRLAVR-EDLRTRMGYCLVYEIKPLSDEEKIAALVEAARRRQIRISPDIFRY 176 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231 ++ R + ++D +D AL+ IT Sbjct: 177 LLHHWRRDIGSLMAMLDALDRHALASHRPIT 207 >gi|285018887|ref|YP_003376598.1| DNAa-homolog protein hda [Xanthomonas albilineans GPE PC73] gi|283474105|emb|CBA16606.1| putative dnaa-homolog protein hda [Xanthomonas albilineans] Length = 244 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 48/233 (20%), Positives = 88/233 (37%), Gaps = 23/233 (9%) Query: 27 QLFFSFPRCLGISRDDLLVHSA-----IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 QL + D L A ++ + S W V L G +G+GK+ LA Sbjct: 5 QLPLALRYPPEQRLDRYLGAPAGMLAHLQAVAAGVAS--DW----VYLSGSTGTGKTHLA 58 Query: 82 NIWSDKSRSTRFSNIAKSLDSI---------LIDTRKPVLLEDIDLLDF---NDTQLFHI 129 + S L + ++ R V L+ ++ + ++ LF Sbjct: 59 LALCAAAEQAGRSAAYLPLQAATGRLPDALEALEGRHLVALDGLEAVAGQREDEVALFDF 118 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N +LL TA P +CLPDL SRL T + + +D V+ + R Sbjct: 119 HNRARSAGVTLLYTAHAMPDGLALCLPDLHSRLAQCTRIVLPPLEDADRAAVLRERAQRR 178 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + ++ +++ + R L L++++D +L+ +T VL+ + Sbjct: 179 GLVLEDAAIDWLLTHVGRDLTGLIGLLERLDRESLAAQRRVTLPFLRRVLQRS 231 >gi|319792303|ref|YP_004153943.1| dnaa regulatory inactivator hda [Variovorax paradoxus EPS] gi|315594766|gb|ADU35832.1| DnaA regulatory inactivator Hda [Variovorax paradoxus EPS] Length = 233 Score = 143 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 80/228 (35%), Gaps = 14/228 (6%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW------PSWPSRV-VILVGPSGSGKS 78 +QL G S D E A+R + W P+ S V L G GSGK+ Sbjct: 7 KQLALDIGIATGPSFDAFFAGP-NEAALRHLQVWVGSAGSPALHSPVPTYLWGEGGSGKT 65 Query: 79 CLAN----IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL-LDFNDTQLFHIINSI 133 L ++ S + + + VLL+D+ L F+ + Sbjct: 66 HLLESVRVALREQGASVGWLHAGLLEPPEFDERWGAVLLDDVHLYTAVQQHAAFNWFVNA 125 Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193 ++ P + DL +RL V + + + V+ + R + + Sbjct: 126 QTLQRGVVAAGALPPADLPLR-EDLRTRLGWGHVFHLQVLSETERRAVLRQAADARGVML 184 Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + +++ R R L +L+ ++D AL IT L +L+ Sbjct: 185 SDDVLDFMLHRFSRDLGSLMELLTQLDGYALQTQRAITIPLIRSMLEN 232 >gi|288941358|ref|YP_003443598.1| DnaA regulatory inactivator Hda [Allochromatium vinosum DSM 180] gi|288896730|gb|ADC62566.1| DnaA regulatory inactivator Hda [Allochromatium vinosum DSM 180] Length = 237 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 87/236 (36%), Gaps = 13/236 (5%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP-SRVVILVGPSGSGKSCLA 81 QL + + + + + + ++L G SG+GK+ L Sbjct: 3 GPTPQLHLPLELRPEPTLESYRPGP-NAEVLDAVSALARGAGEPYLLLFGASGTGKTHLL 61 Query: 82 NIWSDKS-----RSTRFSNIAKSLDSILIDTRK---PVLLEDIDLLDFN---DTQLFHII 130 ++ LD +++ + V ++DI + + + LF + Sbjct: 62 QASCQTVVRSGRQAHFVPLGMADLDPAMLENLEQMDLVAIDDIQCIVGDPAWERALFDLF 121 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N + + SLL P S LPDL SRL ++ D E+++++ R Sbjct: 122 NRLREQGRSLLGATDAAPDSLPFSLPDLASRLLWGPRYRLLPLPDLDCEQLLLESARGRG 181 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + + +L +I+ R L+ ++D+L+L + L ++ ++ D Sbjct: 182 MRLTPELVRFIMSHHARDPASLLDLLARLDSLSLREQRQPSIPLVRRIMLGSEDAD 237 >gi|149908827|ref|ZP_01897487.1| DNA replication initiation factor [Moritella sp. PE36] gi|149808101|gb|EDM68042.1| DNA replication initiation factor [Moritella sp. PE36] Length = 239 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 47/235 (20%), Positives = 89/235 (37%), Gaps = 19/235 (8%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP-SRVVILVGPSGSGKSCLA 81 N QL G + A Q + + + + L G SG S L Sbjct: 4 NTPAQLSLPVQLPDGETFASFYPG-ANVQLLTALKNAAVGDGDPFIYLFGNRSSGTSHLL 62 Query: 82 NIW------SDKSRSTRFSNIAKSLDSILIDTRK---PVLLEDIDLLDFN---DTQLFHI 129 + +D+S + ++ + ++D + V +++I+L+ N + LF+ Sbjct: 63 HATCTECSDADRSAAYLPMEMSSMMIPSVLDGMEHLDLVCIDNIELIAGNREWEVALFNF 122 Query: 130 INSIHQYD-----SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 N SL++T + G+ LPDL SRL ++ L DDD + Sbjct: 123 YNRWLDSHDKNTPGSLIVTGNSAARHLGIQLPDLLSRLDWGVSYQLQLLDDDGKLAALQL 182 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + + +A +++ R R + +D++D ++S +T E L Sbjct: 183 RAEFRGLKLPMDVARFLLNRSSRDMKTLIATLDRLDQASISAQRRLTIPFVKETL 237 >gi|71908793|ref|YP_286380.1| hypothetical protein Daro_3180 [Dechloromonas aromatica RCB] gi|71848414|gb|AAZ47910.1| regulatory inactivation of DnaA Hda protein [Dechloromonas aromatica RCB] Length = 230 Score = 142 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 38/220 (17%), Positives = 79/220 (35%), Gaps = 10/220 (4%) Query: 24 KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP--SRVVILVGPSGSGKSCLA 81 QL + D+ V + + L+ W + L G +GSG+S L Sbjct: 13 PMRQLILDLLPESPPTLDNF-VAGGNAETLALLTEWLAGTRTDTSFCLWGEAGSGRSHLL 71 Query: 82 NIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD-FNDTQLFHIINSIHQYDSSL 140 ++ + + A + + ++ ++ LD LF+ N + L Sbjct: 72 -----QASGFTYVDAALDPALKTAPAAEQLAVDHVEALDETGQIALFNHFNRLKMASGML 126 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L A P + DL +RL + + ++ D + +R + + +L Y Sbjct: 127 LTAADQPPAHLALR-EDLRTRLGSGLICRLQPLSDAEKAAALGAQAKERALKLTPELIDY 185 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 +++ R + ++ +D L + +T L E+L Sbjct: 186 LMRHAPRDMRTLSTIIVALDEYTLEQKRPVTLPLLRELLN 225 >gi|120553881|ref|YP_958232.1| chromosomal replication initiator, DnaA [Marinobacter aquaeolei VT8] gi|120323730|gb|ABM18045.1| regulatory inactivation of DnaA Hda protein [Marinobacter aquaeolei VT8] Length = 232 Score = 142 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 96/230 (41%), Gaps = 15/230 (6%) Query: 24 KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS--RVVILVGPSGSGKSCLA 81 K Q+ D+ A + ++ PS VV++ G S +GKS L Sbjct: 2 KASQMVLGVKLRDDARFDNFH-GDRNRSAAQWLELVCREPSGLPVVVICGDSDTGKSHLL 60 Query: 82 NIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFHI 129 +S + + S+ +L +D+ + L+D++ + + +FH+ Sbjct: 61 QAICHESEQMGKTAVCISIVELLPFGPDALAGLDSHDVICLDDLEHAAADPGWEEAVFHL 120 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N + + L+++ P S L DL SRL ++++ + D+ +++++ R Sbjct: 121 YNRVLDRNGLLVVSLSEVPASLPFGLADLGSRLAHGLLIQLGVYRDEDRQRILMARAEQR 180 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + + + +A +I++R R L L+D +D +L +T V+ Sbjct: 181 GLVMSEDVAGFIMRRAPRKLGDLLGLLDTLDENSLQAQRRLTIPFVKAVM 230 >gi|294339617|emb|CAZ87976.1| putative ATPase involved in DNA replication initiation [Thiomonas sp. 3As] Length = 250 Score = 142 bits (359), Expect = 4e-32, Method: Composition-based stats. Identities = 45/234 (19%), Positives = 81/234 (34%), Gaps = 16/234 (6%) Query: 26 EQLFFSFPRCLGISRDDL--LVHSAIEQAVRLI-DSWPSWPSRVVILVGPSGSGKSCLAN 82 Q S ++ V A++ + D + L G +GSGKS L Sbjct: 6 RQQILPLEWQDERSFENFDPGVQPENALALQALHDLLQQRRHNALYLWGETGSGKSHLLW 65 Query: 83 IWSDK-----------SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL-DFNDTQLFHII 130 + + T S D + + ++D L D+ LF + Sbjct: 66 AACRELQKQGRWALLLTPQTPASAWPDVTDLLAQHAGGLLAVDDAQQLSDWQQDWLFGLY 125 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N+ + + L P + + DL +RL +++ PDD V+ ++ +R Sbjct: 126 NAARSAELAFLACGNAAPAALPLRT-DLRTRLSWGLALRLQAPDDAVRASVLQRLAQERG 184 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 + +L Y++ + R L L+ D AL+ T L +L Q Sbjct: 185 YSLSPELLHYMLTHLSRDLSQLGVLMAAFDRYALAAQRPATVPLLKSLLAAQPQ 238 >gi|145589943|ref|YP_001156540.1| chromosomal replication initiator, DnaA [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048349|gb|ABP34976.1| regulatory inactivation of DnaA Hda protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 251 Score = 142 bits (359), Expect = 4e-32, Method: Composition-based stats. Identities = 45/244 (18%), Positives = 88/244 (36%), Gaps = 29/244 (11%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIE---QAVRLIDSWPSWPS---------RVVILVGP 72 +Q S D+ L + L SW S R + GP Sbjct: 7 PKQFALDLSHSPKASLDNYLCSKDLALLSTLHALCKSWGDVASKQSTNPLNHRWIYWWGP 66 Query: 73 SGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------ILIDTRKPVLLEDIDL 118 GSG++ L + + +++ + S ++ + ++D+D Sbjct: 67 EGSGRTHLLDAIDNAAQNAGIECFSLSPSEPTAWVRLEEKMSALAQAESPSVITVDDVDR 126 Query: 119 LDFNDT-QLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 LD LF I+N + + + M + P + + DL +RL V + L DD Sbjct: 127 LDERLVGALFRILNGVQASKNIHIFMAGKAAPANLELR-EDLRTRLGWGLVFQTQLLDDS 185 Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236 + + + R + + + +++ R R + L+D +D +L +T L Sbjct: 186 EKIQALEQAAKARGLVLSPDVLPWLLNRFYRDMPNLMALIDALDAYSLETKRAVTLPLVR 245 Query: 237 EVLK 240 E+L+ Sbjct: 246 ELLQ 249 >gi|74316240|ref|YP_313980.1| hypothetical protein Tbd_0222 [Thiobacillus denitrificans ATCC 25259] gi|74055735|gb|AAZ96175.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC 25259] Length = 217 Score = 141 bits (357), Expect = 6e-32, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 82/227 (36%), Gaps = 18/227 (7%) Query: 26 EQLFFSF--PRCLGISRDDLLVHSA----IEQAVRLIDSWPSWPSRVVILVGPSGSGKSC 79 +QL P + +V + A +I+ R V + G G+GK+ Sbjct: 2 QQLLLDVRPPARPDLGH--FVVGRNAELMNQLA-AMIEGAA--VERSVYVWGAPGTGKTY 56 Query: 80 LANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN-DTQLFHIINSIHQYDS 138 L W+ + ++D + V+ + ++ D + F N + + Sbjct: 57 LLAAWARACEARGL-----TVDYGAQQPAQAVVADQLESWDADRQHTGFATFNRVREAGG 111 Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198 L P V P+L +RL V +I DD +V +D ++A Sbjct: 112 LWLAAGSVPPAELPVT-PELRTRLGWGLVFQIHGLDDAEKRAALVHHAETLGFRLDTQVA 170 Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 Y++ R + ++++ +D L+L IT L ++L + Sbjct: 171 DYLLNHTSRDMQSLLRVLEALDRLSLETRRAITLPLLRQLLAAVPRS 217 >gi|329914127|ref|ZP_08276060.1| putative regulatory factor [Oxalobacteraceae bacterium IMCC9480] gi|327545193|gb|EGF30464.1| putative regulatory factor [Oxalobacteraceae bacterium IMCC9480] Length = 227 Score = 141 bits (357), Expect = 6e-32, Method: Composition-based stats. Identities = 40/224 (17%), Positives = 80/224 (35%), Gaps = 8/224 (3%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW-----PSRVVILVGPSGSGKSCL 80 Q+ P + D+ + + L+ +R V G +G+GKS L Sbjct: 2 RQMLLDLPGEKPQNLDNF-EPGRNTELLALLSQHAYGDKLPLSARFVYCWGEAGAGKSHL 60 Query: 81 ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN-DTQLFHIINSIHQYDSS 139 + + + + + + I LL+D D L F + N I +Y + Sbjct: 61 LHALNTTASTRLIGPDSPAAAFIHSPDIGLYLLDDCDRLSDELQIAAFGLFNQIREYGGA 120 Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199 L+ + P + DL +RL + ++ DD + R + + Sbjct: 121 LISSGALPPARLDLR-EDLRTRLGWGLIYEVHGLTDDEKIAALTLAARTRGFALATGVLP 179 Query: 200 YIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 Y++ R + ++D++D +L +T L E+L+ Sbjct: 180 YLITHFRRDMRSLSAMLDELDQYSLETKRPVTLPLLRELLQRES 223 >gi|241767680|ref|ZP_04765313.1| DnaA regulatory inactivator Hda [Acidovorax delafieldii 2AN] gi|241361369|gb|EER57884.1| DnaA regulatory inactivator Hda [Acidovorax delafieldii 2AN] Length = 232 Score = 141 bits (357), Expect = 7e-32, Method: Composition-based stats. Identities = 50/231 (21%), Positives = 89/231 (38%), Gaps = 18/231 (7%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW------PSWPSRV-VILVGPSGSGKS 78 +QL G + E A++ + W P S V L G +GSGK+ Sbjct: 2 KQLALDIGLATGPTLARFFGGP-NEAALQHLRLWVGDGHQPGARSPVPTYLWGEAGSGKT 60 Query: 79 CLA----NIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL-FHII-NS 132 L D+ S + + + + V+L+D+ L + F+ N+ Sbjct: 61 HLLKAVRQALRDQGASVGWLDPSVGAPPEFDENWAAVILDDVHLYSTAQQAVAFNWFVNA 120 Query: 133 IHQYDSS---LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 I + +L P + DL SRL V ++ L D+ V+ + R Sbjct: 121 ISPASGTPRWVLAAGSLPPADLPLR-DDLRSRLGWGHVFQLQLLDETARRAVLRQEADAR 179 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 +F+ ++ +++ R R L +L+D++D AL IT L +L+ Sbjct: 180 GVFLGDEVMDFMLNRFSRDLGSLMQLLDQLDAYALRTQRAITIPLLKAMLE 230 >gi|300690557|ref|YP_003751552.1| regulatory factor involved in inactivation of DnaA; probable ATPase [Ralstonia solanacearum PSI07] gi|299077617|emb|CBJ50252.1| regulatory factor involved in inactivation of DnaA; probable ATPase [Ralstonia solanacearum PSI07] Length = 233 Score = 141 bits (357), Expect = 7e-32, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 93/229 (40%), Gaps = 15/229 (6%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLID------SWPSWPSRVVILVGPSGSGKS 78 +QL F + + V + E+AV + + S R+V L G SGSG+S Sbjct: 4 PQQLPLEFGATPAPTFGNF-VATGNEEAVLRLSGLVAQLAVGSAADRLVYLWGESGSGRS 62 Query: 79 CLANIWSDKSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLD-FNDTQLFHIINS 132 L + ++ + F + L ++D + LD + F+++N Sbjct: 63 HLLHAVCAQAEAAGFQARYLEAKAPLEAFEYDPAITIWAIDDAERLDEWAQVAAFNLVNE 122 Query: 133 IHQYDSSLLMTARTF-PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 + + L+TA P+S + DL +RL V + D + +++ +R + Sbjct: 123 VRADPHAALITAGAAAPMSMPLR-EDLRTRLGWGLVYWLRPLSDADKVEALLQAARERGM 181 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + ++V R + L++ +D +L+R +T L ++L Sbjct: 182 QLSADVPQWLVTHSYRDMPSLMALLEALDTYSLARKRAVTLPLLRDMLA 230 >gi|30248129|ref|NP_840199.1| hypothetical protein NE0098 [Nitrosomonas europaea ATCC 19718] gi|30180014|emb|CAD84009.1| conserved hypothetical protein [Nitrosomonas europaea ATCC 19718] Length = 220 Score = 141 bits (357), Expect = 7e-32, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 97/221 (43%), Gaps = 10/221 (4%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP--SRVVILVGPSGSGKSCLANI 83 +QL S D+ + S E+ + + + + R L G +GSGKS L Sbjct: 3 QQL-LDITEIGPPSLDNFI-SSGNEEVLYTLRNLVAGNQQDRFYYLWGKTGSGKSHLLQA 60 Query: 84 ----WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD-FNDTQLFHIINSIHQYDS 138 +S++ ++R+ + + + +++++++ LD +LF++ N + Sbjct: 61 VADAFSEQQCNSRYIDCNQD-EPNFNPGTDCIVIDNVERLDDAAQIRLFNLYNHLRDNKH 119 Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198 + + + T P + DL +RL V ++ D+ +V+ + ++ Sbjct: 120 GIFLASGTKPPAQLDLRQDLTTRLGWGLVYQVHELTDEKKIEVMQDYAIRCGFELPLEIC 179 Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 Y+++ +R+L +LV +D L+L+R IT L E+L Sbjct: 180 HYLLKYEQRNLSSLIRLVHALDQLSLTRQRPITLPLLRELL 220 >gi|311104116|ref|YP_003976969.1| DnaA regulatory inactivator Hda [Achromobacter xylosoxidans A8] gi|310758805|gb|ADP14254.1| DnaA regulatory inactivator Hda [Achromobacter xylosoxidans A8] Length = 233 Score = 141 bits (356), Expect = 8e-32, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 85/229 (37%), Gaps = 17/229 (7%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 QL S ++ + +A+ + + P R + + G +G G++ L + Sbjct: 3 RQLLLDVLPAPAPSLNNYIAGP-NGEALAAVRALI--PGRALYIWGAAGCGRTHLLRALT 59 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKP-------VLLEDIDLL-DFNDTQLFHIINSIHQYD 137 + + + V ++D+ + D LF + N + Sbjct: 60 ARPDAVYIDAETGENMLRRLAEADSKSPMPKFVAVDDVHRMNDSRQAALFALYNRWRESA 119 Query: 138 SS-----LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 ++ L + P+S + DL +RL V ++ D + A+R + Sbjct: 120 ATGRAFALALAGDRAPLSMPLR-EDLRTRLGWDLVFRLDPLSDADKLAALSAQAAERGMH 178 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + ++ +++ ER + +L+D +D +L+ G IT L +L + Sbjct: 179 LAPEIINWMLTHHERDIRKLAELIDALDRYSLATGRPITLPLLRAMLAD 227 >gi|238021029|ref|ZP_04601455.1| hypothetical protein GCWU000324_00926 [Kingella oralis ATCC 51147] gi|237868009|gb|EEP69015.1| hypothetical protein GCWU000324_00926 [Kingella oralis ATCC 51147] Length = 223 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 86/224 (38%), Gaps = 13/224 (5%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 +Q F F R D L+ +A LI + + + G GSGKS + W Sbjct: 2 QQTAFDF-NDPAYPRFDKLLGTANA---ELIYILQQEHDQFLYIWGEQGSGKSHILQAWV 57 Query: 86 DKS-----RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ-LFHIINSIHQYDS- 138 ++ + L + V ++ I+ L+ + LF+I N Sbjct: 58 GQALQNWQTAVYIDAGTTPLTDSAVQA-DFVAIDQIEKLNDAEQATLFYIFNHFRNSKHG 116 Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198 LL++A T P + DL +R+ ++ + + M RQ+ ID + Sbjct: 117 HLLLSADTPPSKLHLR-EDLRTRMAYCLAYEVKSLSREEKITALTNMAKTRQLNIDPGIY 175 Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 Y++ + L + + + N ++S+G IT L +LK+ Sbjct: 176 QYLLDHWRQDLGSLITMFNDLANYSISQGKPITLPLLRRLLKQQ 219 >gi|198275620|ref|ZP_03208151.1| hypothetical protein BACPLE_01789 [Bacteroides plebeius DSM 17135] gi|198271249|gb|EDY95519.1| hypothetical protein BACPLE_01789 [Bacteroides plebeius DSM 17135] Length = 471 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 43/263 (16%), Positives = 98/263 (37%), Gaps = 31/263 (11%) Query: 11 FVPDKQKNDQPKNKEEQLFFSFPR-CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66 + + + Q P + ++ + ++ E + + ++ P+R Sbjct: 112 VYNGNKTPNPLQAPAPQ-DLD-PHLNPNYNFENFIKGNSNEFSRTVAETVAQNPARTFNP 169 Query: 67 VILVGPSGSGKSCL---------------------ANIWSDKSRSTRFSNIAKSLDSILI 105 + + GPSG GK+ L A+++ + + +N Sbjct: 170 LFIYGPSGVGKTHLINAIGTRIKELYPEKRVLYVSAHLFQVQYTDSVRTNHFNDF-ISFY 228 Query: 106 DTRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 T ++++DI FHI N +HQ L++T+ PV L +R Sbjct: 229 QTIDVLIIDDIQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVMLQGMEERLLTRF 288 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 K V ++ PD + + ++ + I + + +YI + + S+ E +V+ + Sbjct: 289 KWGLVAELEKPDIELRKNILRNKIKRDGLTIPESVISYIAESVNESVRELEGIVNSLLAQ 348 Query: 223 ALSRGMGITRSLAAEVLKETQQC 245 ++ I LA ++++ +C Sbjct: 349 SILFKREIDLDLAQRIVRKAVKC 371 >gi|91789418|ref|YP_550370.1| chromosomal replication initiator DnaA [Polaromonas sp. JS666] gi|91698643|gb|ABE45472.1| Chromosomal replication initiator, DnaA [Polaromonas sp. JS666] Length = 228 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 77/228 (33%), Gaps = 14/228 (6%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN 82 +Q+ S + E A++ ++ W R L G SGK+ L Sbjct: 2 KQIALDIGLASAPSFANFFGGP-NEAALKHLELWAGNTLRSPVPTYLWGEPASGKTHLLR 60 Query: 83 IWSDKSRSTRFS----NIAKSLDSILIDTRKPVLLEDIDL-LDFNDTQLFHII----NSI 133 S+ R + ++ V+L+D L F+ NS Sbjct: 61 AVSEALREQGAPVGWMDAFVLEPPEFSESWAAVILDDCHLYTAVQQQAAFNWFVNALNSA 120 Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193 +L P + DL +RL V + + V+ + R +F+ Sbjct: 121 DGRPRWVLAAGLVPPADLALR-EDLRTRLGWGHVFALQALTEAERRAVLRREADARGVFL 179 Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 +++ R R L +L+D++D+ AL IT L +L+ Sbjct: 180 GDDAMDFMLTRFSRDLASLMQLLDQLDSYALQTKRAITIPLIKSMLEN 227 >gi|124268206|ref|YP_001022210.1| regulatory inactivation of DnaA Hda protein [Methylibium petroleiphilum PM1] gi|124260981|gb|ABM95975.1| regulatory inactivation of DnaA Hda protein [Methylibium petroleiphilum PM1] Length = 226 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 84/222 (37%), Gaps = 8/222 (3%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 +QL S ++ V + + + S P+ + L GP+G+GKS L + Sbjct: 2 KQLPLQLGPGPAQSFENFAVGANAAAVGAVRAASAS-PTP-LYLWGPAGAGKSHLLRALA 59 Query: 86 DKS--RSTRFSNIAKSLDSIL--IDTRKPVLLEDIDLL-DFNDTQLFHIINSIHQYDSSL 140 ++ + R SL++ + VLL+ D F + + + Sbjct: 60 REAAVQGRRVGAFGPSLETPWTWGEGVDLVLLDGCDDFDAARQHAAFALFVEAATHRVPV 119 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 + R PV V DL +RL V ++ + + + + R I + + Y Sbjct: 120 VAAGRLPPVDLPVR-EDLRTRLGWGPVFQLLPLAEAEMRVTLQREAGRRGIALSDDVTGY 178 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ R R L L+D +D ALS +T L +L E Sbjct: 179 LLTRFARDLGSLMALLDALDEFALSEQRAVTVPLLKRMLAEQ 220 >gi|253997589|ref|YP_003049653.1| DnaA regulatory inactivator Hda [Methylotenera mobilis JLW8] gi|253984268|gb|ACT49126.1| DnaA regulatory inactivator Hda [Methylotenera mobilis JLW8] Length = 218 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 85/231 (36%), Gaps = 28/231 (12%) Query: 22 KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAV----RLIDSWPSWPSRVVILVGPSGSGK 77 K+ +QL S D+ + +A+ + + +R + L G GSGK Sbjct: 9 KSPTKQLLLDIQPLPPPSLDNFIEGQ-NAEALFSLKQALTHAEE--ARFIYLWGAQGSGK 65 Query: 78 SCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ---LFHIINSIH 134 S L +R + P+ + D D ++ LF N + Sbjct: 66 SHLLQACERMARQSNL----------------PLFIAD-DTHTLDEAAQIALFDQFNQLR 108 Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194 L+ + P+ + DL +RL V ++ D+ + + +R + + Sbjct: 109 SSGGILISSGIAAPMQMNLR-DDLATRLAWGLVYQLHPLTDEEKAQALRTHATERGMKLP 167 Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 ++ Y ++ + R L ++D +D +L+ +T + ++L+ Q Sbjct: 168 DEVVEYCLRYLRRDLPTLMAVLDALDVWSLTEKKPVTVPMLKKLLQHNLQA 218 >gi|296135511|ref|YP_003642753.1| Sigma 54 interacting domain protein [Thiomonas intermedia K12] gi|295795633|gb|ADG30423.1| Sigma 54 interacting domain protein [Thiomonas intermedia K12] Length = 250 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 45/234 (19%), Positives = 82/234 (35%), Gaps = 16/234 (6%) Query: 26 EQLFFSFPRCLGISRDDL--LVHSAIEQAVRLI-DSWPSWPSRVVILVGPSGSGKSCLAN 82 Q S ++ V A++ + D + L G +GSGKS L Sbjct: 6 RQQILPLEWQDERSFENFDPGVQPENALALQALHDLLQQRRHNALYLWGETGSGKSHLLW 65 Query: 83 IWSDKSR-----------STRFSNIAKSLDSILIDTRKPVLLEDIDLL-DFNDTQLFHII 130 + + T S D + + ++D L D+ LF + Sbjct: 66 AACRELQKQGRWALLLNPQTPASAWPDVTDLLAQQAGGLLAVDDAQQLSDWQQDWLFGLY 125 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N+ + + L P + + DL +RL +++ PDD +V+ ++ +R Sbjct: 126 NAARSAELAFLACGNAAPAALSLRT-DLRTRLSWGLALRLQAPDDAVRARVLQRLAHERG 184 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 + +L Y++ + R L L+ D AL+ T L +L Q Sbjct: 185 YSLSPELLHYMLTHLSRDLSQLGVLMAAFDRYALAAQRPATVPLLKSLLAAQPQ 238 >gi|332993251|gb|AEF03306.1| chromosomal replication initiator DnaA like protein [Alteromonas sp. SN2] Length = 251 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 42/246 (17%), Positives = 94/246 (38%), Gaps = 34/246 (13%) Query: 25 EEQLFFS--FPRCLGISRDDLLVHSAIEQAVRLID-------SWPSWPS---------RV 66 QL P D V + ++ V L+ +W PS + Sbjct: 6 AMQLTLPVTLPTDETF---DSFVDTGNQEVVALLKGIPSAMPAWQDAPSLASLSALHLPL 62 Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDID 117 V L+G G GKS L + +++ +L+ ++ + L++I Sbjct: 63 VTLLGGQGLGKSHLLYALCHQLAQQNVNHLYLNLNHHAQWSFDIFDGLENLSVICLDNIH 122 Query: 118 LLDFN---DTQLFHIINSIHQYDSSLLMTARTF-PVSWGVCLPDLCSRLKAATVVKISLP 173 + + + LF + N + + +L++ + P LPDL SRL + ++ Sbjct: 123 AIAGHARWEEALFDLFNRVIENPHALIVGSSQHGPSHPAFQLPDLSSRLAWGVIYHLTAL 182 Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233 +D+ ++V+ R + + ++ +++ +R L L+ ++D +L ++ + Sbjct: 183 NDESRKEVVRLRANQRGLRLSEQALQFLLHHSDRDLRSLLNLLARLDTRSLQEQKKLSVA 242 Query: 234 LAAEVL 239 + L Sbjct: 243 MVKREL 248 >gi|149927692|ref|ZP_01915944.1| hypothetical protein LMED105_15843 [Limnobacter sp. MED105] gi|149823518|gb|EDM82748.1| hypothetical protein LMED105_15843 [Limnobacter sp. MED105] Length = 250 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 37/225 (16%), Positives = 91/225 (40%), Gaps = 10/225 (4%) Query: 24 KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPS--WPSRVVILVGPSGSGKSCLA 81 +QL + + L+ Q V + + S V + GPSG GKS L Sbjct: 19 PMQQLLLDVFTPPRPTLSNFLIGQ-NGQLVHELRELINMKGTSPFVYIYGPSGCGKSHLL 77 Query: 82 NIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD-FNDTQLFHIINSIHQYDSS- 139 + + + + + T + +++++ID L ++ QLF+ NS + Sbjct: 78 RGVASQLG---VNVLEGGNRFVFRPTEQALVIDNIDRLTPYSQVQLFNAFNSSMAENKPG 134 Query: 140 -LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198 +++ + + DL +R++A +++ D + + R + + +++ Sbjct: 135 KIVLAGELPTIELKLR-DDLRTRIEAGLCLRVQPLSDQEKHEALQATAQSRGLQLSEEVI 193 Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 Y ++ +R + ++D +D +L + ++ +L +K + Sbjct: 194 EYALRYFQRDMGSLMAVMDGLDRFSLEQQKPVSVNLLRHWMKRRE 238 >gi|83748966|ref|ZP_00945975.1| DnaA-related protein [Ralstonia solanacearum UW551] gi|207721703|ref|YP_002252142.1| cog0593, atpase involved in dna replication initiation protein [Ralstonia solanacearum MolK2] gi|207744195|ref|YP_002260587.1| cog0593, atpase involved in dna replication initiation protein [Ralstonia solanacearum IPO1609] gi|83724389|gb|EAP71558.1| DnaA-related protein [Ralstonia solanacearum UW551] gi|206586865|emb|CAQ17450.1| cog0593, atpase involved in dna replication initiation protein [Ralstonia solanacearum MolK2] gi|206595600|emb|CAQ62527.1| cog0593, atpase involved in dna replication initiation protein [Ralstonia solanacearum IPO1609] Length = 233 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 92/229 (40%), Gaps = 15/229 (6%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW------PSWPSRVVILVGPSGSGKS 78 +QL F + D+ V + E+AV + R+V L G SGSG+S Sbjct: 4 PQQLPLEFGATPAPTIDNF-VATGNEEAVLRLSGLIAELAHGRAADRLVYLWGESGSGRS 62 Query: 79 CLANIWSDKSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLD-FNDTQLFHIINS 132 L + ++ + F + L ++D + LD + F+++N Sbjct: 63 HLLHAVCAQAEAAGFQARYLEAKAPLEAFEYDPAITIWAIDDAERLDEWAQVAAFNLVNE 122 Query: 133 IHQYDSSLLMTARTF-PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 + + L+TA P+S + DL +RL V + D + +++ +R + Sbjct: 123 VRADPHAALITAGAAAPMSMPLR-EDLRTRLGWGLVYWLRPLSDADKVEALLQAAHERGM 181 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + ++V R + L++ +D +L+R +T L ++L Sbjct: 182 QLSADVPQWLVTHSYRDMPSLMALLEALDTYSLARKRAVTLPLLRDMLA 230 >gi|294775360|ref|ZP_06740882.1| chromosomal replication initiator protein DnaA [Bacteroides vulgatus PC510] gi|319642816|ref|ZP_07997454.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 3_1_40A] gi|294450817|gb|EFG19295.1| chromosomal replication initiator protein DnaA [Bacteroides vulgatus PC510] gi|317385560|gb|EFV66501.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 3_1_40A] Length = 468 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 43/267 (16%), Positives = 94/267 (35%), Gaps = 38/267 (14%) Query: 11 FVPDKQKNDQPKNKEEQLFFSFPR-CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66 + D K P P + ++ + ++ E + + ++ P++ Sbjct: 108 VIRDGNKAPNPMQAPAPQDLD-PHLNPNYNFENFIKGNSNEFSRTVGETVAKNPAKTFNP 166 Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTR------------------ 108 + L GPSG GK+ L N TR + + + Sbjct: 167 LFLYGPSGVGKTHLTNAI-----GTRIKELYPEKRVLYVSAHLFQVQYTDSVRTNHFNDF 221 Query: 109 -------KPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158 ++++DI FHI N +HQ L++T+ PV L Sbjct: 222 ISFYQTIDVLIIDDIQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVMLQGMEERL 281 Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218 +R K V ++ PD + + ++ + I + + YI + + S+ E +++ Sbjct: 282 LTRFKWGLVAELEKPDVELRKNILRNKIRRDGLNIPETVINYIAENVNESVRELEGIINS 341 Query: 219 MDNLALSRGMGITRSLAAEVLKETQQC 245 + ++ + LA ++++ +C Sbjct: 342 LLAQSIIFKRDVDLDLAERIVRKAVRC 368 >gi|212691082|ref|ZP_03299210.1| hypothetical protein BACDOR_00572 [Bacteroides dorei DSM 17855] gi|237712418|ref|ZP_04542899.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 9_1_42FAA] gi|237726609|ref|ZP_04557090.1| chromosomal replication initiator protein DnaA [Bacteroides sp. D4] gi|265752120|ref|ZP_06087913.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 3_1_33FAA] gi|212666314|gb|EEB26886.1| hypothetical protein BACDOR_00572 [Bacteroides dorei DSM 17855] gi|229435135|gb|EEO45212.1| chromosomal replication initiator protein DnaA [Bacteroides dorei 5_1_36/D4] gi|229453739|gb|EEO59460.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 9_1_42FAA] gi|263236912|gb|EEZ22382.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 3_1_33FAA] Length = 471 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 43/267 (16%), Positives = 94/267 (35%), Gaps = 38/267 (14%) Query: 11 FVPDKQKNDQPKNKEEQLFFSFPR-CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66 + D K P P + ++ + ++ E + + ++ P++ Sbjct: 111 VIRDGNKAPNPMQAPAPQDLD-PHLNPNYNFENFIKGNSNEFSRTVGETVAKNPAKTFNP 169 Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTR------------------ 108 + L GPSG GK+ L N TR + + + Sbjct: 170 LFLYGPSGVGKTHLTNAI-----GTRIKELYPEKRVLYVSAHLFQVQYTDSVRTNHFNDF 224 Query: 109 -------KPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158 ++++DI FHI N +HQ L++T+ PV L Sbjct: 225 ISFYQTIDVLIIDDIQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVMLQGMEERL 284 Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218 +R K V ++ PD + + ++ + I + + YI + + S+ E +++ Sbjct: 285 LTRFKWGLVAELEKPDVELRKNILRNKIRRDGLNIPETVINYIAENVNESVRELEGIINS 344 Query: 219 MDNLALSRGMGITRSLAAEVLKETQQC 245 + ++ + LA ++++ +C Sbjct: 345 LLAQSIIFKRDVDLDLAERIVRKAVRC 371 >gi|150002609|ref|YP_001297353.1| chromosomal replication initiation protein [Bacteroides vulgatus ATCC 8482] gi|254881428|ref|ZP_05254138.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 4_3_47FAA] gi|149931033|gb|ABR37731.1| chromosomal replication initiator protein DnaA [Bacteroides vulgatus ATCC 8482] gi|254834221|gb|EET14530.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 4_3_47FAA] Length = 471 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 43/267 (16%), Positives = 94/267 (35%), Gaps = 38/267 (14%) Query: 11 FVPDKQKNDQPKNKEEQLFFSFPR-CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66 + D K P P + ++ + ++ E + + ++ P++ Sbjct: 111 VIRDGNKAPNPMQAPAPQDLD-PHLNPNYNFENFIKGNSNEFSRTVGETVAKNPAKTFNP 169 Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTR------------------ 108 + L GPSG GK+ L N TR + + + Sbjct: 170 LFLYGPSGVGKTHLTNAI-----GTRIKELYPEKRVLYVSAHLFQVQYTDSVRTNHFNDF 224 Query: 109 -------KPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158 ++++DI FHI N +HQ L++T+ PV L Sbjct: 225 ISFYQTIDVLIIDDIQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVMLQGMEERL 284 Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218 +R K V ++ PD + + ++ + I + + YI + + S+ E +++ Sbjct: 285 LTRFKWGLVAELEKPDVELRKNILRNKIRRDGLNIPETVINYIAENVNESVRELEGIINS 344 Query: 219 MDNLALSRGMGITRSLAAEVLKETQQC 245 + ++ + LA ++++ +C Sbjct: 345 LLAQSIIFKRDVDLDLAERIVRKAVRC 371 >gi|300703165|ref|YP_003744767.1| regulatory factor involved in inactivation of dnaa; ATPase [Ralstonia solanacearum CFBP2957] gi|299070828|emb|CBJ42125.1| regulatory factor involved in inactivation of DnaA; probable ATPase [Ralstonia solanacearum CFBP2957] Length = 233 Score = 138 bits (349), Expect = 5e-31, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 91/229 (39%), Gaps = 15/229 (6%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW------PSWPSRVVILVGPSGSGKS 78 +QL F + D+ V + E+AV + R+V L G SGSG+S Sbjct: 4 PQQLPLEFGATPAPTIDNF-VATGNEEAVLRLSGLIAELAHGRAADRLVYLWGESGSGRS 62 Query: 79 CLANIWSDKS-----RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD-FNDTQLFHIINS 132 L + ++ ++ A ++D + LD + F+++N Sbjct: 63 HLLHAVCAQAESAGFQARYLEAKAPLEAFEYDPAITIWAIDDAERLDEWAQVAAFNLVNE 122 Query: 133 IHQYDSSLLMTARTF-PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 + + L+TA P+S + DL +RL V + D + +++ +R + Sbjct: 123 VRADPHAALITAGAAAPMSMPLR-EDLRTRLGWGLVYWLRPLSDADKVEALLQAAHERGM 181 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + ++V R + L++ +D +L+R +T L ++L Sbjct: 182 QLSVDVPQWLVTHSYRDMPSLMALLEALDTYSLARKRAVTLPLLRDMLA 230 >gi|85059708|ref|YP_455410.1| DNA replication initiation factor [Sodalis glossinidius str. 'morsitans'] gi|84780228|dbj|BAE75005.1| conserved hypothetical protein [Sodalis glossinidius str. 'morsitans'] Length = 229 Score = 138 bits (349), Expect = 6e-31, Method: Composition-based stats. Identities = 29/190 (15%), Positives = 74/190 (38%), Gaps = 13/190 (6%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLE 114 + G G+S L + + + LD ++ V ++ Sbjct: 39 GSYLYFWSRKGGGRSHLLHAACAALSARAKAVGYVPLDKRTWFVPEVLEGMEQLALVTMD 98 Query: 115 DIDLLDFN---DTQLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 +I+ + + + +F++ N I + L+++ P + LPDL SRL + ++ Sbjct: 99 NIECIVGDLPWEMAIFNLYNRIQETGRTRLIISGNCPPRQLNLSLPDLASRLDWGQIYRL 158 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 D+ + R + + ++ ++++R+ER + +D++D+ ++ + Sbjct: 159 QPLSDEEKGYALQMRAKLRGFELPEDVSRFLLKRLERDMRTLSATLDQLDHASIRAQRKL 218 Query: 231 TRSLAAEVLK 240 T +L Sbjct: 219 TIPFVKAILN 228 >gi|332141572|ref|YP_004427310.1| Chromosomal replication initiator, DnaA like protein to DnaA protein Hda [Alteromonas macleodii str. 'Deep ecotype'] gi|327551594|gb|AEA98312.1| Chromosomal replication initiator, DnaA like protein to DnaA protein Hda [Alteromonas macleodii str. 'Deep ecotype'] Length = 245 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 46/246 (18%), Positives = 94/246 (38%), Gaps = 34/246 (13%) Query: 26 EQLFFS--FPRCLGISRDDLLVHSAIEQAVRLI----DSWPSWPS------------RVV 67 QL P D V+ E+ V ++ ++ P W +V Sbjct: 1 MQLPLPITLPVDENF---DSFVNKGNEEVVSILRQIAEALPYWREAPALGPLSSLQLPLV 57 Query: 68 ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS---------ILIDTRKPVLLEDIDL 118 L+G S GKS L + S++ +L+ ++ + L++I Sbjct: 58 TLLGNSAIGKSHLLFATCHQLAGKSVSHLYLNLNDYQAWSLDIFEGLENLSLIALDNIHA 117 Query: 119 LDFN---DTQLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 + N + LF + N + + +L++ T+ P + LPDL SRL + ++ D Sbjct: 118 IAGNVQWEEALFDLFNRVIETKRALIICTSHLGPSNPAFTLPDLRSRLAWGVIYHVNQLD 177 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234 D E+ + +R + + + +++ ER L L+ ++D +L ++ ++ Sbjct: 178 DGGREEAVRLRAEERGLTLSNQALQFLLHHSERDLKSLMSLLARLDARSLQEQKRLSVAM 237 Query: 235 AAEVLK 240 L Sbjct: 238 VKRELN 243 >gi|332528516|ref|ZP_08404504.1| chromosomal replication initiator DnaA [Hylemonella gracilis ATCC 19624] gi|332042027|gb|EGI78365.1| chromosomal replication initiator DnaA [Hylemonella gracilis ATCC 19624] Length = 231 Score = 138 bits (348), Expect = 8e-31, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 83/232 (35%), Gaps = 17/232 (7%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVV----------ILVGPSGS 75 +Q+ G + + L E + + +W L GP+GS Sbjct: 2 KQIALDIRVADGPTFANFLPGP-NEVVLSHLRAWAESADGTEGARAGAPVPDYLWGPAGS 60 Query: 76 GKSCLANIW----SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL-FHII 130 GK+ L + + + + VL++D+ L + F+ Sbjct: 61 GKTHLLKAAREALQARGAGVGWLDAGMEEAPPFDEAWSAVLMDDVHLYTAGLQHVAFNWF 120 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 ++L PV + DL +RL V + L + L V+ R Sbjct: 121 VHAQASRMAVLAAGDAPPVGLTLR-EDLRTRLGWGHVHGLQLLGEAELRAVLRGAAQWRG 179 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + +++ +++ R R L +L++++D AL IT L +L+ET Sbjct: 180 LSLGEEVTDFMLTRFSRDLGSLMELLNQLDGYALRAQRPITIPLLKAMLEET 231 >gi|17547344|ref|NP_520746.1| hypothetical protein RSc2625 [Ralstonia solanacearum GMI1000] gi|17429647|emb|CAD16332.1| putative cog0593, atpase involved in dna replication initiation protein [Ralstonia solanacearum GMI1000] Length = 233 Score = 138 bits (348), Expect = 8e-31, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 92/229 (40%), Gaps = 15/229 (6%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLID------SWPSWPSRVVILVGPSGSGKS 78 +QL F + + V + E+AV + + R+V L G SGSG+S Sbjct: 4 PQQLPLEFGATPAPTIGNF-VATGNEEAVLRLSGLVAELAVGRAADRLVYLWGESGSGRS 62 Query: 79 CLANIWSDKSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLD-FNDTQLFHIINS 132 L + ++ + F + L ++D + LD + F+++N Sbjct: 63 HLLHAVCAQAEAAGFQARYLEAKAPLEAFEYDPAITIWAIDDAERLDEWAQVAAFNLVNE 122 Query: 133 IHQYDSSLLMTARTF-PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 + + L+TA P+S + DL +RL V + D + +++ +R + Sbjct: 123 VRADPHAALITAGAAAPMSMPLR-EDLRTRLGWGLVYWLRPLSDADKVEALLQAARERGM 181 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + ++V R + L++ +D +L+R +T L ++L Sbjct: 182 QLSADVPQWLVTHSYRDMPSLMALLEALDTYSLARKRAVTLPLLRDMLA 230 >gi|299065815|emb|CBJ36993.1| regulatory factor involved in inactivation of DnaA; probable ATPase [Ralstonia solanacearum CMR15] Length = 233 Score = 137 bits (347), Expect = 8e-31, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 92/229 (40%), Gaps = 15/229 (6%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLID------SWPSWPSRVVILVGPSGSGKS 78 +QL F + + V + E+AV + + R+V L G SGSG+S Sbjct: 4 PQQLPLEFGATPAPTIGNF-VATGNEEAVLRLSGLIAELAVGRAADRLVYLWGESGSGRS 62 Query: 79 CLANIWSDKSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLD-FNDTQLFHIINS 132 L + ++ + F + L ++D + LD + F+++N Sbjct: 63 HLLHAVCAQAEAAGFQARYLEAKAPLEAFEYDPAITIWAIDDAERLDEWAQVAAFNLVNE 122 Query: 133 IHQYDSSLLMTARTF-PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 + + L+TA P+S + DL +RL V + D + +++ +R + Sbjct: 123 VRADPHAALITAGAAAPMSMPLR-EDLRTRLGWGLVYWLRPLSDADKVEALLQAARERGM 181 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + ++V R + L++ +D +L+R +T L ++L Sbjct: 182 QLSADVPQWLVTHSYRDMPSLMALLEALDTYSLARKRAVTLPLLRDMLA 230 >gi|254481391|ref|ZP_05094636.1| DnaA regulatory inactivator Hda [marine gamma proteobacterium HTCC2148] gi|214038554|gb|EEB79216.1| DnaA regulatory inactivator Hda [marine gamma proteobacterium HTCC2148] Length = 232 Score = 137 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 52/227 (22%), Positives = 94/227 (41%), Gaps = 15/227 (6%) Query: 26 EQLFFSFPRCLGISRDDLL---VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 +QL + + L + A+ Q V+ + + VV L G GSGKS L Sbjct: 6 QQLPLLVQLRDDATLKNFLPFPLSEALLQGVKALCAGEG--DSVVFLHGNRGSGKSHLLQ 63 Query: 83 IWSDKSRSTRFSNIAKSLDSIL-------IDTRKPVLLEDIDLLDFNDT---QLFHIINS 132 + + L ++T V L+D+D + ++ LF + N Sbjct: 64 AACHLAGEQALYLPLRELQVYPPEEVLAGVETLGLVALDDLDAVLGDEAWELALFDLYNR 123 Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 ++ LL+ A P V L DL SRL V ++ D+ + ++ + R + Sbjct: 124 SKEWGCRLLIAASGAPRVLDVSLADLRSRLSWGVVYQLPSVSDEEKQAILQFRASRRGLA 183 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + ++A +IV R+ R L +L+DK+D +L + ++ +VL Sbjct: 184 LPDEVAVFIVNRVPRDLERLLELLDKLDRASLVQKRALSIPFVKQVL 230 >gi|238798723|ref|ZP_04642195.1| DnaA-homolog protein hda [Yersinia mollaretii ATCC 43969] gi|238717419|gb|EEQ09263.1| DnaA-homolog protein hda [Yersinia mollaretii ATCC 43969] Length = 148 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 62/139 (44%), Gaps = 4/139 (2%) Query: 106 DTRKPVLLEDIDLLDFNDT---QLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSR 161 + V +++I+ + ++ +F++ N I + LL+T P + LPDL SR Sbjct: 9 EQLALVCIDNIECIAGDEQWEMAMFNLYNRIVETGRTRLLITGDRPPRQLNLGLPDLASR 68 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 L + K+ DD + + R + + + ++++R++R + ++++D Sbjct: 69 LDWGQIYKLQPLSDDEKLQALQLRAKLRGFELPEDVGRFLLKRLDREMRTLFTTLNQLDR 128 Query: 222 LALSRGMGITRSLAAEVLK 240 +++ +T E L Sbjct: 129 ASITAQRKLTIPFVKETLN 147 >gi|289811495|ref|ZP_06542124.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 153 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 63/136 (46%), Gaps = 4/136 (2%) Query: 109 KPVLLEDIDLLDFNDT---QLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKA 164 V +++I+ + ++ +F + N I + LL+T P + LPDL SRL Sbjct: 17 SLVCIDNIECVAGDELWEMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDW 76 Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 + K+ D+ + + R + + + ++++R++R + +D++D+ ++ Sbjct: 77 GQIYKLQPLSDEDKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDHASI 136 Query: 225 SRGMGITRSLAAEVLK 240 + +T E+LK Sbjct: 137 TAQRKLTIPFVKEILK 152 >gi|329893747|ref|ZP_08269835.1| Chromosomal replication initiator, DnaA [gamma proteobacterium IMCC3088] gi|328923470|gb|EGG30784.1| Chromosomal replication initiator, DnaA [gamma proteobacterium IMCC3088] Length = 237 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 88/228 (38%), Gaps = 15/228 (6%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN--I 83 QL + G + D+ + + ++ S + L G +GK+ L + + Sbjct: 6 RQLTLNVQLPDGFTFDNFVFNENRLLVREQLEGADS-----IWLTGAYSTGKTHLLSALV 60 Query: 84 WSDKSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLD---FNDTQLFHIINSIHQ 135 ++ + ++ ++ +DID L LFH+ N H Sbjct: 61 CANDQTALYLPADELIASCDPTMLDGLEATDCLVFDDIDKLAHTPAWSEALFHLFNRHHA 120 Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195 + +++ P L DL SR +++ +D K+ + R I +++ Sbjct: 121 QGGRWVCSSQVAPRYVDTPLADLRSRFTLFPAFELANYNDQERVKIFSERARFRGIKVNE 180 Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 + YI + R L + +L+D++D +L+ +T L VL++ + Sbjct: 181 DVYPYITNHLPRDLKYWLQLLDQLDQASLAEQRKVTIPLVKSVLQQNE 228 >gi|212710884|ref|ZP_03319012.1| hypothetical protein PROVALCAL_01952 [Providencia alcalifaciens DSM 30120] gi|212686581|gb|EEB46109.1| hypothetical protein PROVALCAL_01952 [Providencia alcalifaciens DSM 30120] Length = 155 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 73/156 (46%), Gaps = 9/156 (5%) Query: 89 RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQYDSS-LLMTA 144 R+ ++ + ++ + + V +++I + ++ +F++ N I + + LL+T Sbjct: 4 RAYFVPDVLEGMEHLSL-----VCIDNIQCIAGDEEWEMAIFNLYNRILEIGRTCLLITG 58 Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 P + LPDL SRL + K+ D+ + + R + + + ++++R Sbjct: 59 DRPPRQIDLKLPDLASRLDWGQIYKLHPLSDEDKICALQLRASIRGFELPEDVCRFVLKR 118 Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 ++R + +++K+D+ ++ +T ++LK Sbjct: 119 LDRKMGTLFDILNKLDHASIVAQRKMTIPFVKDILK 154 >gi|160897629|ref|YP_001563211.1| DnaA regulatory inactivator Hda [Delftia acidovorans SPH-1] gi|160363213|gb|ABX34826.1| DnaA regulatory inactivator Hda [Delftia acidovorans SPH-1] Length = 235 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 83/231 (35%), Gaps = 18/231 (7%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW------PSWPSRV-VILVGPSGSGKS 78 +QL + V + + W + + V L G SGSGK+ Sbjct: 5 KQLALDISMASSPTLSRFFVGP-NAAVIDHLRHWVGDGRMQTARTPVPTYLWGESGSGKT 63 Query: 79 CLANI----WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL-LDFNDTQLFHII-NS 132 L ++ + + + + VL++D+D+ + F+ N+ Sbjct: 64 HLLKAVREALREQGAMVGWMDASTLFPPPFDERWAAVLMDDVDIYTPLQQARAFNWFVNA 123 Query: 133 ---IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 +L P + DL +RL V ++ L D+ V+ + R Sbjct: 124 TSPATGSPRWVLGAGPLPPADLKLR-EDLRTRLGWGHVFQLQLLDETARRAVLRQEADAR 182 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 +F+ + Y+++R R L +L+D +D AL IT L +L+ Sbjct: 183 GVFLGDDVMDYMLKRFSRDLGSLMQLLDMLDGFALRNKRAITIPLLKTMLE 233 >gi|121608736|ref|YP_996543.1| chromosomal replication initiator DnaA [Verminephrobacter eiseniae EF01-2] gi|121553376|gb|ABM57525.1| Chromosomal replication initiator, DnaA [Verminephrobacter eiseniae EF01-2] Length = 307 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 47/236 (19%), Positives = 87/236 (36%), Gaps = 20/236 (8%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVV--------ILVGPSG 74 ++ +QL + D A++ + R L G G Sbjct: 74 SRMKQLVLDIGLATVPTLDRFFAGP-NGAALQHL-RLALGAGRHAATRSPVPSYLWGEPG 131 Query: 75 SGKSCLANIWS----DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL-FHI 129 SGK+ L ++ S + + A S + V+L+D+ D L F+ Sbjct: 132 SGKTHLLQAVCQSLREQGASVGWLDPALSAPPDFDENWTAVVLDDVQSYDSARQALAFNW 191 Query: 130 I-NS---IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 N+ +L P + DL SRL V ++ L + V+ + Sbjct: 192 FVNAISPASGAQRWVLAAGSLPPADLPLR-EDLRSRLGWGHVFQLQLLGEAERRSVLRQE 250 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 R +F+ ++ Y+++R R L +L++++D ALS IT L +L++ Sbjct: 251 ADARGVFLGDEVMDYMLRRFARDLGSLMQLLERLDAFALSTRRAITIPLLKTMLEQ 306 >gi|121595308|ref|YP_987204.1| chromosomal replication initiator DnaA [Acidovorax sp. JS42] gi|222111592|ref|YP_002553856.1| dnaa regulatory inactivator hda [Acidovorax ebreus TPSY] gi|120607388|gb|ABM43128.1| Chromosomal replication initiator, DnaA [Acidovorax sp. JS42] gi|221731036|gb|ACM33856.1| DnaA regulatory inactivator Hda [Acidovorax ebreus TPSY] Length = 230 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 50/230 (21%), Positives = 90/230 (39%), Gaps = 18/230 (7%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLID------SWPSWPSRVVILVGPSGSGKSC 79 +QL G + D+ QA++ + + P P L G +G+GKS Sbjct: 2 KQLALDIGLVTGPTLDNFHAGP-NAQALQHLRLAVAGGAAPRSPVPT-YLWGETGTGKSH 59 Query: 80 LANI----WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL-LDFNDTQLFH----II 130 L + S + + + +L S + VLL+++ L F+ I Sbjct: 60 LLRATYEALRGQGASVGWLDASVALPSAFDERWSAVLLDEVHLYTTAQQAAAFNWFVNAI 119 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N +L P + DL +RL V ++ L D+ V+ + R Sbjct: 120 NPTEGAPRWVLAAGDLPPADLPLR-DDLRTRLGWGHVFQLQLLDEQERRAVLRQQADARG 178 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 IF+ ++ Y++ R R L +L+D++D+ AL +T L +L+ Sbjct: 179 IFLADEVMNYMLGRFSRDLGSLMQLLDRLDSFALRTQRAVTVPLLKTMLE 228 >gi|56479468|ref|YP_161057.1| DnaA regulatory inactivator Hda [Aromatoleum aromaticum EbN1] gi|56315511|emb|CAI10156.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1] Length = 223 Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 92/221 (41%), Gaps = 10/221 (4%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP-SRVVILVGPSGSGKSCLANIW 84 +QL + D+ +V + ++ V +D+ P + + L GP GSG+S L Sbjct: 2 KQLVLDIRPDAPPTLDNFVVG-SNDELVAALDA--IGPRAAHLYLWGPPGSGRSHLLRAA 58 Query: 85 SDK----SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL-DFNDTQLFHIINSIHQYDSS 139 + R + A++ D + + ++D++ L LF+ N + Sbjct: 59 VARAHVAGRPALYVPAAEAGDELPQTGGALLAVDDVEALDAAAQVALFNAFNRARGNGQT 118 Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199 LL+ P+ V DL +R+ V ++ DD+ ++ + R + + ++ Sbjct: 119 LLLAGAAAPLQLAVR-EDLRTRVGQCLVYEVRPLDDEARAAILRTLAERRGLPLADEVTD 177 Query: 200 YIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 ++++ R L ++D +D +L R +T L E++ Sbjct: 178 FLLRHGRRDLPSLLAVLDALDTASLERKRAVTLPLLREMIH 218 >gi|319762113|ref|YP_004126050.1| dnaa regulatory inactivator hda [Alicycliphilus denitrificans BC] gi|330826056|ref|YP_004389359.1| DnaA regulatory inactivator Hda [Alicycliphilus denitrificans K601] gi|317116674|gb|ADU99162.1| DnaA regulatory inactivator Hda [Alicycliphilus denitrificans BC] gi|329311428|gb|AEB85843.1| DnaA regulatory inactivator Hda [Alicycliphilus denitrificans K601] Length = 235 Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 88/234 (37%), Gaps = 18/234 (7%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSR-------VVILVGPSGS 75 + QL + E A++ + S V L G +GS Sbjct: 2 SPMRQLALDIGLAPVPTLARFFAGP-NEAALQHLRLAVEGASGGALRSCLPVYLWGEAGS 60 Query: 76 GKSCLANIWSD--KSRSTRFSNIAKSLDSILI--DTRKPVLLEDIDLLD-FNDTQLFHII 130 GK+ L + +++ R + S ++ + VLL+++ L F+ Sbjct: 61 GKTHLLKAVQEALRTQGVRVGWMQASTENPPAFDEDWAAVLLDEVHLYSTGQQAAAFNWF 120 Query: 131 -NS---IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 N+ +L P + DL SRL V ++ L D+ V+ + Sbjct: 121 VNATSPATGAPRWVLAAGDLPPADLPLR-DDLRSRLGWGHVFQLHLLDEPARRAVLRQEA 179 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 R +F+ ++ Y+++R R L +L+D++D+ AL IT L +L+ Sbjct: 180 DARGVFLGDEVMDYMLKRFSRDLGSLVQLLDRLDSFALRTQRAITIPLLKTMLE 233 >gi|238783847|ref|ZP_04627865.1| DnaA-homolog protein hda [Yersinia bercovieri ATCC 43970] gi|238715234|gb|EEQ07228.1| DnaA-homolog protein hda [Yersinia bercovieri ATCC 43970] Length = 145 Score = 135 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 63/138 (45%), Gaps = 4/138 (2%) Query: 106 DTRKPVLLEDIDLLDFNDT---QLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSR 161 + V +++I+ + ++ +F++ N I + LL+T P + LPDL SR Sbjct: 6 EQLALVCIDNIECIAGDEQWEMAMFNLYNRIVETGRTRLLITGDRPPRQLNLGLPDLASR 65 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 L + K+ DD + + R + + + ++++R++R + +D++D Sbjct: 66 LDWGQIYKLQPLSDDEKLQALQLRAKLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDR 125 Query: 222 LALSRGMGITRSLAAEVL 239 +++ +T ++L Sbjct: 126 ASITAQRKLTIPFVKDIL 143 >gi|297537444|ref|YP_003673213.1| DnaA regulatory inactivator Hda [Methylotenera sp. 301] gi|297256791|gb|ADI28636.1| DnaA regulatory inactivator Hda [Methylotenera sp. 301] Length = 201 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 78/193 (40%), Gaps = 25/193 (12%) Query: 44 LVHSAIEQAVRLIDSWPSWP--SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLD 101 + ++A+ +++ S S+ + L G +GSGKS L + Sbjct: 19 FIAGRNDEALASLNAVASNSAQSKFIYLWGEAGSGKSHLLSAC----------------- 61 Query: 102 SILIDTRKPVLLEDIDLLDFN-DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 + +++++ LL+ + LF+I N + + +L+ P G+ DL + Sbjct: 62 ----EAIGMQVVDNVHLLNNDAQIDLFNIYNQLKESGGTLITAGLHAPTQMGLR-DDLAT 116 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 RL V ++ +D + A+R I + ++ Y ++ + R L +D +D Sbjct: 117 RLAWGLVYQLHPLNDAEKALALQNHAAERGIRLPTEVVDYCLRYLRRDLSTLMATLDALD 176 Query: 221 NLALSRGMGITRS 233 +L+ +T Sbjct: 177 EWSLTTKKPVTVP 189 >gi|33598142|ref|NP_885785.1| hypothetical protein BPP3626 [Bordetella parapertussis 12822] gi|33566700|emb|CAE38910.1| conserved hypothetical protein [Bordetella parapertussis] Length = 248 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 89/231 (38%), Gaps = 17/231 (7%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 QL + ++ + QA+ + + R + L GP+G G++ L S Sbjct: 18 RQLLLDVLPAPAPTLNNYIAGP-NGQALAAAHALTA--GRAIYLWGPAGCGRTHLLRGLS 74 Query: 86 DKSRSTRFSNI--AKSLDSILIDTRKP-----VLLEDIDLLD-FNDTQLFHIINSIHQYD 137 + + A+SL + V ++D+ +D LF + N + Sbjct: 75 ARPEAIYIDAARAAQSLRELAEADSTAPMPRLVAVDDVHRMDDARQAGLFALYNRWRESA 134 Query: 138 SS-----LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 ++ L ++ P+S + DL +RL V ++ D + A+R + Sbjct: 135 ATGRAFALAVSGDRAPMSLPLR-EDLRTRLGWDLVFRLDPLSDADKLAALTAQAAERGLQ 193 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 + ++ +++ ER + L+D +D +L+ G IT L +L + Sbjct: 194 LAPEVINWMLTHHERDIRKLAALLDALDRYSLATGRPITTPLLRAMLADPH 244 >gi|33603035|ref|NP_890595.1| hypothetical protein BB4061 [Bordetella bronchiseptica RB50] gi|33568666|emb|CAE34424.1| conserved hypothetical protein [Bordetella bronchiseptica RB50] Length = 233 Score = 135 bits (340), Expect = 7e-30, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 89/231 (38%), Gaps = 17/231 (7%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 QL + ++ + QA+ + + R + L GP+G G++ L S Sbjct: 3 RQLLLDVLPAPAPTLNNYIAGP-NGQALAAAHALTA--GRAIYLWGPAGCGRTHLLRGLS 59 Query: 86 DKSRSTRFSNI--AKSLDSILIDTRKP-----VLLEDIDLLD-FNDTQLFHIINSIHQYD 137 + + A+SL + V ++D+ +D LF + N + Sbjct: 60 ARPEAIYIDAARAAQSLRELAEADSTAPMPRLVAVDDVHRMDDARQAGLFALYNRWRESA 119 Query: 138 SS-----LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 ++ L ++ P+S + DL +RL V ++ D + A+R + Sbjct: 120 ATGRAFALAVSGDRAPMSLPLR-EDLRTRLGWDLVFRLDPLSDADKLAALTAQAAERGLQ 178 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 + ++ +++ ER + L+D +D +L+ G IT L +L + Sbjct: 179 LAPEVINWMLTHHERDIRKLAALLDALDRYSLATGRPITIPLLRAMLADPH 229 >gi|121605884|ref|YP_983213.1| chromosomal replication initiator DnaA [Polaromonas naphthalenivorans CJ2] gi|120594853|gb|ABM38292.1| Chromosomal replication initiator, DnaA [Polaromonas naphthalenivorans CJ2] Length = 235 Score = 135 bits (340), Expect = 7e-30, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 80/227 (35%), Gaps = 14/227 (6%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP--SRV-VILVGPSGSGKSCLAN 82 +QL S + + VR + W P S V L G SGK+ L Sbjct: 9 KQLALDIGLASDPSFANFFAGP-NDATVRQLALWAQSPLDSPVPTYLWGDEASGKTHLLK 67 Query: 83 IWSDKSRSTRFS----NIAKSLDSILIDTRKPVLLEDIDL-LDFNDTQLFHII-NSIHQY 136 + R S + + ++ V+++D L F+ N++ Sbjct: 68 AVGEALRHQGASSGWMDASMLEPPEFNESWSAVIMDDCHLYTPAQQRSAFNWFVNALSTD 127 Query: 137 DSS---LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193 D ++ P + DL +RL V + DD VI + R + Sbjct: 128 DGHPRWVVAAGNVPPADLPLR-EDLRTRLGWGNVFALQALSDDERRAVIKREADARGFSL 186 Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 ++ +++ R L +L+DK+D+ AL IT L +L+ Sbjct: 187 SDEVTDFMLTHFSRDLGSLMQLLDKLDSYALQTKRAITIPLIKTMLE 233 >gi|326789140|ref|YP_004306961.1| chromosomal replication initiator protein DnaA [Clostridium lentocellum DSM 5427] gi|326539904|gb|ADZ81763.1| chromosomal replication initiator protein DnaA [Clostridium lentocellum DSM 5427] Length = 446 Score = 134 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 46/280 (16%), Positives = 109/280 (38%), Gaps = 34/280 (12%) Query: 1 MNLMKEDYS--FFVPDKQKNDQPK--NKEEQL--FFSFPRC--LGISRDDLLVHSAIEQA 52 + ++ +DY+ F +P++Q + K + EQL + P D +V ++ A Sbjct: 68 LQVLNKDYNIKFMLPNEQTTTEQKAAKRNEQLQDPLNNPSNLNPRYVFDSFVVGNSNRMA 127 Query: 53 VRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWS-----DKSRSTRFSNIAKSLDSIL 104 + P+ + L G G GK+ L + + + ++ + L Sbjct: 128 HAAALAVSEAPARAYNPLFLYGGVGLGKTHLMHSIAHYILDQNPSAKIIYASSEKFTNEL 187 Query: 105 IDTRK---------------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTART 146 I++ + +L++DI + + + FH N++++ + +++++ Sbjct: 188 INSIRDDKNESFRNKYRNIDVLLIDDIQFITGKERTQEEFFHTFNALYEANKQIIISSDR 247 Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206 P L SR + + I PD + ++ K + + + + +I + + Sbjct: 248 PPKEIETLEERLRSRFEWGLIADIQSPDLETRIAILRKKAEIESLSVPEDVLLFIAKTVI 307 Query: 207 RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 ++ E ++++ + IT LA E LK+ D Sbjct: 308 SNIRELEGALNRILAFSSLTNKPITVELANEALKDLISKD 347 >gi|89901288|ref|YP_523759.1| chromosomal replication initiator DnaA [Rhodoferax ferrireducens T118] gi|89346025|gb|ABD70228.1| Chromosomal replication initiator, DnaA [Rhodoferax ferrireducens T118] Length = 228 Score = 134 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 83/229 (36%), Gaps = 14/229 (6%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVV-------ILVGPSGSGKS 78 +Q+ G + E A+R + W + + G +GSGK+ Sbjct: 2 KQIALDIGLATGPTLSSFFAGP-NEAALRHLQIWVAGGANAAARSPVPTYFFGSAGSGKT 60 Query: 79 CLANI----WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF-NDTQLFHIINSI 133 L + ++ S + + + + VL++D+ + F+ + Sbjct: 61 HLLKAVQEAFREQGASVGWLDASVQQPPEFDERWAAVLMDDVHFYNVVQQQAAFNWFINA 120 Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193 + +L P + DL +RL V ++ L + V+ + R +F+ Sbjct: 121 QTWQRGVLAAGELPPADLKLR-DDLRTRLGWGHVFQLQLLSEPERRAVLRQAADARGLFL 179 Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ +++ R R L +L++ +D AL IT L ++ T Sbjct: 180 SDEVMDFMLTRFSRDLGNLMELLNLIDGYALQTKRAITIPLIKSMMDNT 228 >gi|33591482|ref|NP_879126.1| hypothetical protein BP0241 [Bordetella pertussis Tohama I] gi|33571124|emb|CAE40621.1| conserved hypothetical protein [Bordetella pertussis Tohama I] gi|332380929|gb|AEE65776.1| DnaA regulatory inactivator Hda [Bordetella pertussis CS] Length = 233 Score = 134 bits (339), Expect = 9e-30, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 89/231 (38%), Gaps = 17/231 (7%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 QL + ++ + QA+ + + R + L GP+G G++ L S Sbjct: 3 RQLLLDVLPAPAPALNNYIAGP-NGQALAAAHALTA--GRAIYLWGPAGCGRTHLLRGLS 59 Query: 86 DKSRSTRFSNI--AKSLDSILIDTRKP-----VLLEDIDLLD-FNDTQLFHIINSIHQYD 137 + + A+SL + V ++D+ +D LF + N + Sbjct: 60 ARPEAIYIDAARAAQSLRELAEADSTAPMPRLVAVDDVHRMDDARQAGLFALYNRWRESA 119 Query: 138 SS-----LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 ++ L ++ P+S + DL +RL V ++ D + A+R + Sbjct: 120 ATGRAFALAVSGDRAPMSLPLR-EDLRTRLGWDLVFRLDPLSDADKLAALTAQAAERGLQ 178 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 + ++ +++ ER + L+D +D +L+ G IT L +L + Sbjct: 179 LAPEVINWMLTHHERDIRKLAALLDALDRYSLATGRPITIPLLRAMLADPH 229 >gi|221065684|ref|ZP_03541789.1| DnaA regulatory inactivator Hda [Comamonas testosteroni KF-1] gi|264679763|ref|YP_003279672.1| Chromosomal replication initiator, DnaA [Comamonas testosteroni CNB-2] gi|220710707|gb|EED66075.1| DnaA regulatory inactivator Hda [Comamonas testosteroni KF-1] gi|262210278|gb|ACY34376.1| Chromosomal replication initiator, DnaA [Comamonas testosteroni CNB-2] Length = 235 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 50/234 (21%), Positives = 88/234 (37%), Gaps = 24/234 (10%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW-----------PSRVVILVGPSG 74 +QL G + V LID W P L G +G Sbjct: 5 KQLALDISMAPGPTLARFFVGP-NA---ALIDHLRHWVGDGQLQQSRTPVPT-YLWGEAG 59 Query: 75 SGKSCLANI----WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL-LDFNDTQLFHI 129 SGKS L ++ + + + + VL++D+D+ F + F+ Sbjct: 60 SGKSHLLKAVREALREQGAMVGWMDASTPFPPEFDERWAAVLMDDVDIYTPFQQARAFNW 119 Query: 130 INSIHQYDSSL---LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 + + L ++ A PV+ DL +RL V ++ L D+ V+ + Sbjct: 120 FVNATSPATGLPRWVLAAGQLPVADLKMREDLRTRLGWGHVYQLHLLDESARRAVLRQEA 179 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 R +F+ ++ Y+++R R L +L+D +D AL IT L +L+ Sbjct: 180 DARGVFLSDEVMDYMLRRFSRDLGSLMQLLDMLDGFALRNKRAITIPLLKTMLE 233 >gi|329297548|ref|ZP_08254884.1| DNA replication initiation factor [Plautia stali symbiont] Length = 175 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 68/173 (39%), Gaps = 13/173 (7%) Query: 80 LANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLF 127 + + + + + LD ++ V +++I+ + + +F Sbjct: 1 MLHAACAEMSARGEAVGYVPLDKRTWFVPEVLEGMENLALVCIDNIECIAGEAEWEMVIF 60 Query: 128 HIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 + N I + LL+T P + LPDL SRL + ++ D+ + + Sbjct: 61 DLYNRILETGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYRLQPLSDEDKLQAMQLRA 120 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + + + ++++R++R + +D++D ++S +T E L Sbjct: 121 GLRGFELPEDVGRFLLKRLDREMRTLFDTLDRLDRASISAQRKLTIPFVKEAL 173 >gi|299533943|ref|ZP_07047304.1| Chromosomal replication initiator, DnaA [Comamonas testosteroni S44] gi|298718070|gb|EFI59066.1| Chromosomal replication initiator, DnaA [Comamonas testosteroni S44] Length = 232 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 50/234 (21%), Positives = 88/234 (37%), Gaps = 24/234 (10%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW-----------PSRVVILVGPSG 74 +QL G + V LID W P L G +G Sbjct: 2 KQLALDISMAPGPTLARFFVGP-NA---ALIDHLRHWVGDGQLQQSRTPVPT-YLWGEAG 56 Query: 75 SGKSCLANI----WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL-LDFNDTQLFHI 129 SGKS L ++ + + + + VL++D+D+ F + F+ Sbjct: 57 SGKSHLLKAVREALREQGAMVGWMDASTPFPPEFDERWAAVLMDDVDIYTPFQQARAFNW 116 Query: 130 INSIHQYDSSL---LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 + + L ++ A PV+ DL +RL V ++ L D+ V+ + Sbjct: 117 FVNATSPATGLPRWVLAAGQLPVADLKMREDLRTRLGWGHVYQLHLLDESARRAVLRQEA 176 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 R +F+ ++ Y+++R R L +L+D +D AL IT L +L+ Sbjct: 177 DARGVFLSDEVMDYMLRRFSRDLGSLMQLLDMLDGFALRNKRAITIPLLKTMLE 230 >gi|255016564|ref|ZP_05288690.1| chromosomal replication initiation protein [Bacteroides sp. 2_1_7] gi|256842198|ref|ZP_05547702.1| chromosomal replication initiator protein DnaA [Parabacteroides sp. D13] gi|256736082|gb|EEU49412.1| chromosomal replication initiator protein DnaA [Parabacteroides sp. D13] Length = 471 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 47/263 (17%), Positives = 97/263 (36%), Gaps = 37/263 (14%) Query: 13 PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV----VI 68 P+ P++ + QL + D+ ++ + ++ P + + Sbjct: 120 PNPFMTTAPQDLDPQL------NPKYNFDNYFEGTSNKLVRTAGEAVAQNPGKTTFNPLF 173 Query: 69 LVGPSGSGKSCLANIWSDK----------------------SRSTRFSNIAKSLDSILID 106 + GPSG GK+ L + + + + R + L+ Sbjct: 174 IFGPSGVGKTHLCHAIGTRIRELHPEKKVLYVSSHLFRVQFTDAIRKNTTNDFLN--FYQ 231 Query: 107 TRKPVLLEDI-DLLDFN--DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 +LL+DI +L+ + FHI N +HQ L++T+ PV L +RLK Sbjct: 232 NIDVLLLDDIQELIGMDKTQNTFFHIFNHLHQLGKQLILTSDKPPVDLQGMEERLITRLK 291 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 ++S PD D +K++ I I ++ +I + ++ E ++ + A Sbjct: 292 WGLTAELSRPDLDLRKKILKNKINHDGIMIPDEVFNFIANNVTENVRDLEGILVSLMANA 351 Query: 224 LSRGMGITRSLAAEVLKETQQCD 246 + I L V+ + + + Sbjct: 352 VINNREIDLPLTKRVVSQAVRLE 374 >gi|150006675|ref|YP_001301418.1| chromosomal replication initiation protein [Parabacteroides distasonis ATCC 8503] gi|262384875|ref|ZP_06078007.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 2_1_33B] gi|298377645|ref|ZP_06987596.1| ATPase [Bacteroides sp. 3_1_19] gi|301308943|ref|ZP_07214888.1| ATPase involved in DNA replication initiation [Bacteroides sp. 20_3] gi|149935099|gb|ABR41796.1| chromosomal replication initiator protein DnaA [Parabacteroides distasonis ATCC 8503] gi|262293591|gb|EEY81527.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 2_1_33B] gi|298265348|gb|EFI07010.1| ATPase [Bacteroides sp. 3_1_19] gi|300832969|gb|EFK63594.1| ATPase involved in DNA replication initiation [Bacteroides sp. 20_3] Length = 465 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 47/263 (17%), Positives = 97/263 (36%), Gaps = 37/263 (14%) Query: 13 PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV----VI 68 P+ P++ + QL + D+ ++ + ++ P + + Sbjct: 114 PNPFMTTAPQDLDPQL------NPKYNFDNYFEGTSNKLVRTAGEAVAQNPGKTTFNPLF 167 Query: 69 LVGPSGSGKSCLANIWSDK----------------------SRSTRFSNIAKSLDSILID 106 + GPSG GK+ L + + + + R + L+ Sbjct: 168 IFGPSGVGKTHLCHAIGTRIRELHPEKKVLYVSSHLFRVQFTDAIRKNTTNDFLN--FYQ 225 Query: 107 TRKPVLLEDI-DLLDFN--DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 +LL+DI +L+ + FHI N +HQ L++T+ PV L +RLK Sbjct: 226 NIDVLLLDDIQELIGMDKTQNTFFHIFNHLHQLGKQLILTSDKPPVDLQGMEERLITRLK 285 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 ++S PD D +K++ I I ++ +I + ++ E ++ + A Sbjct: 286 WGLTAELSRPDLDLRKKILKNKINHDGIMIPDEVFNFIANNVTENVRDLEGILVSLMANA 345 Query: 224 LSRGMGITRSLAAEVLKETQQCD 246 + I L V+ + + + Sbjct: 346 VINNREIDLPLTKRVVSQAVRLE 368 >gi|221134619|ref|ZP_03560922.1| Chromosomal replication initiator, DnaA like protein to DnaA protein Hda [Glaciecola sp. HTCC2999] Length = 246 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 46/246 (18%), Positives = 96/246 (39%), Gaps = 32/246 (13%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAI--EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI 83 QL + D + + + A+ I++ S + ++++ G SGK+ LA Sbjct: 1 MQLPLPLALPSKQTLDSFIFEDNLLLKDALLQINTLSS-KNALLMVHGAHHSGKTHLATA 59 Query: 84 WSDKSRSTRFSNIAKSLDSILI--------------------------DTRKPVLLEDID 117 + S S L + + ++++++ Sbjct: 60 AYQHAISQSISAYYLDLSLLFAPEILTAYQASSDIHSETLMSDMLAGYEAHALLVVDNMH 119 Query: 118 LLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 ++ N + LF +IN + ++++T+ P CLPDL SRL V I Sbjct: 120 VVAGNKDLEIALFDLINRCIESACAMVLTSALGPAHHDFCLPDLRSRLTWGQVYHIHPLT 179 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234 DD L + + + + + +Y+++ R ++++D++D ++LS IT L Sbjct: 180 DDGLLQAVTSYVQTKGLNMQMNAISYLLKFSTRDFSSIQRVIDELDKVSLSHQQAITIPL 239 Query: 235 AAEVLK 240 +VL Sbjct: 240 IKKVLH 245 >gi|313199997|ref|YP_004038655.1| sigma 54 interacting domain-containing protein [Methylovorus sp. MP688] gi|312439313|gb|ADQ83419.1| Sigma 54 interacting domain protein [Methylovorus sp. MP688] Length = 204 Score = 132 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 37/209 (17%), Positives = 75/209 (35%), Gaps = 20/209 (9%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW--PSRVVILVGPSGSGKSCLANI 83 +QL S D+ + +A+ + + R + L G +GSGKS L + Sbjct: 2 KQLLLDIQPSALPSLDNFVPG-RNAEALHSLRAALEGQSAQRFIYLWGETGSGKSHLLHA 60 Query: 84 WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT-QLFHIINSIHQYDSSLLM 142 + + + +D+ LL + LF N + + L+ Sbjct: 61 CNRAGEALGVHV---------------ICADDVHLLSNEEQIALFDSYNHLRDSEGVLVA 105 Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 P + + DL +RL ++ D+ + + A R + + ++ Y + Sbjct: 106 AGIAAPTAMQLR-DDLATRLAWGLSYQLHPLSDEEKALALRQHAAARGMRLPDEVLDYCL 164 Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGIT 231 + + R L +D +D +LS +T Sbjct: 165 RHLRRDLPTLVSTLDALDEWSLSYKRPVT 193 >gi|171464072|ref|YP_001798185.1| Chromosomal replication initiator DnaA [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193610|gb|ACB44571.1| Chromosomal replication initiator DnaA [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 251 Score = 132 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 45/244 (18%), Positives = 88/244 (36%), Gaps = 29/244 (11%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS------------RVVILVGP 72 +Q S ++ L + L + SW + R + GP Sbjct: 7 PKQFALDISHSPKASLENYLPGKDLALVSVLQEIKRSWATSNSTSASNPLNRRWIYWWGP 66 Query: 73 SGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTR--------------KPVLLEDIDL 118 GSG++ L + ++ +A + R + ++D+D Sbjct: 67 QGSGRTHLLEAIGNAAKHAGLERVALTPSEPASWIRLEENISTLAQTHIPSIITVDDVDQ 126 Query: 119 LDFNDTQ-LFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 LD LF I+N++ + + M PV+ + DL +RL V + L DDD Sbjct: 127 LDDRLVGSLFRILNAVQASKAIHIFMAGTAAPVNLKLR-EDLRTRLGWGLVFQTQLLDDD 185 Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236 + + + R + + + +++ R + L+D +D +L +T L Sbjct: 186 EKIQALGEAAKARGLVLSPDVLPWLLSCFYRDMPSLMALIDALDAYSLETKRAVTLPLVR 245 Query: 237 EVLK 240 E+L+ Sbjct: 246 ELLQ 249 >gi|213420310|ref|ZP_03353376.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 176 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 71/170 (41%), Gaps = 13/170 (7%) Query: 64 SRVVILVGPSGSGKSCLANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLE 114 S + L G+G+S L + + + + + K + ++ V ++ Sbjct: 7 SGYIYLWAREGAGRSHLLHAACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCID 66 Query: 115 DIDLLDFNDT---QLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 +I+ + ++ +F + N I + LL+T P + LPDL SRL + K+ Sbjct: 67 NIECVAGDELWEMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKL 126 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 D+ + + R + + + ++++R++R + +D++D Sbjct: 127 QPLSDEDKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLD 176 >gi|197286950|ref|YP_002152822.1| chromosomal replication initiator protein [Proteus mirabilis HI4320] gi|227354809|ref|ZP_03839226.1| DNA-directed DNA replication initiator protein [Proteus mirabilis ATCC 29906] gi|118708|sp|P22837|DNAA_PROMI RecName: Full=Chromosomal replication initiator protein DnaA gi|226735833|sp|B4F0U5|DNAA_PROMH RecName: Full=Chromosomal replication initiator protein DnaA gi|150878|gb|AAA83958.1| dnaA [Proteus mirabilis] gi|194684437|emb|CAR46152.1| chromosomal replication initiator protein [Proteus mirabilis HI4320] gi|227165127|gb|EEI49958.1| DNA-directed DNA replication initiator protein [Proteus mirabilis ATCC 29906] Length = 466 Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats. Identities = 43/250 (17%), Positives = 97/250 (38%), Gaps = 26/250 (10%) Query: 19 DQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGS 75 +QP+++ +L + D+ + + + A P + L G +G Sbjct: 116 NQPQSQLPELNYRSNVNPKHKFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGL 175 Query: 76 GKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND 123 GK+ L + I K+ + ++ ++ + +ED +D L +D Sbjct: 176 GKTHLLHAVGNSIMERKANAKVVYMHSERFVQDMVKALQNNAIEDFKRYYRSVDALLIDD 235 Query: 124 -----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 + FH N++ + + +++T+ +P L SR V I Sbjct: 236 IQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEP 295 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232 P+ + +++K + QI + ++A +I +R+ ++ E ++++ A G IT Sbjct: 296 PELETRVAILMKKADENQIQLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITI 355 Query: 233 SLAAEVLKET 242 E L++ Sbjct: 356 DFVREALRDL 365 >gi|293603554|ref|ZP_06685975.1| DnaA regulatory inactivator Hda [Achromobacter piechaudii ATCC 43553] gi|292817990|gb|EFF77050.1| DnaA regulatory inactivator Hda [Achromobacter piechaudii ATCC 43553] Length = 233 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 84/229 (36%), Gaps = 17/229 (7%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 QL S ++ + +A+ + + P R + + G +G G++ L + Sbjct: 3 RQLLLDVLPAPAPSLNNYIAGP-NGEALAAVRALN--PGRALYIWGAAGCGRTHLLRALT 59 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKP-------VLLEDIDLLD-FNDTQLFHIINSIHQYD 137 + + + V ++D+ +D LF + N + Sbjct: 60 ARPDAVFIDPAKGETMLRRLAEADSKSPMPKFVAVDDVHRMDDSRQAALFALYNRWRESA 119 Query: 138 SS-----LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 ++ L + P+S + DL +RL V ++ D + A+R + Sbjct: 120 ATGRAFALALAGDRAPLSMPLR-EDLRTRLGWDLVFRLDPLSDADKLAALAAQAAERGMH 178 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + ++ +++ ER + L+D +D +L+ G IT L +L + Sbjct: 179 LAPEIINWMLIHHERDIRKLAALIDALDRYSLATGRPITLPLLRAMLAD 227 >gi|226326920|ref|ZP_03802438.1| hypothetical protein PROPEN_00780 [Proteus penneri ATCC 35198] gi|225204757|gb|EEG87111.1| hypothetical protein PROPEN_00780 [Proteus penneri ATCC 35198] Length = 466 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 42/249 (16%), Positives = 90/249 (36%), Gaps = 31/249 (12%) Query: 24 KEEQLFFSFPRC----LGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSG 76 QL D+ + + + A P + L G +G G Sbjct: 118 PASQLP-ELNYRSNVNPKHKFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLG 176 Query: 77 KSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND- 123 K+ L + I K+ + ++ ++ + +ED +D L +D Sbjct: 177 KTHLLHAVGNSIMERKANAKVVYMHSERFVQDMVKALQNNAIEDFKRYYRSVDALLIDDI 236 Query: 124 ----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 + FH N++ + + +++T+ +P L SR V I P Sbjct: 237 QFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPP 296 Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233 + + +++K + QI + ++A +I +R+ ++ E ++++ A G IT Sbjct: 297 ELETRVAILMKKADENQIQLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITID 356 Query: 234 LAAEVLKET 242 E L++ Sbjct: 357 FVREALRDL 365 >gi|118602306|ref|YP_903521.1| regulatory inactivation of DnaA Hda protein [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567245|gb|ABL02050.1| regulatory inactivation of DnaA Hda protein [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 224 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 89/222 (40%), Gaps = 11/222 (4%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW-PSWPSRVVILVGPSGSGKSCLAN--I 83 QL + + + +Q + ++ S VV + G SGK+ L Sbjct: 3 QLGLPLSLNSKMLLSNFI-GKKNQQVLDFVNQLLTQKSSAVVFISGAKSSGKTHLLQGCA 61 Query: 84 WSDKSR--STRFSNIAKSLDSILIDTRKPV---LLEDIDLLDF-NDTQLFHIINSIHQYD 137 +S + +I + L +I+ V ++++D L LF + N I D Sbjct: 62 FSALDGQLGVIYIDIKQELPEGIINDLVSVDWICIDNVDYLSIIQQQALFDLYNRIKLAD 121 Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 + L+++A + P + L DL +RL A V + +D+ +I + D I ID K+ Sbjct: 122 TKLIVSAGSLPGELNL-LKDLKTRLSLAVVFTLETLNDEQKILIIERKMTDININIDIKV 180 Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 Y+ + R L ++ +D +L + I+ + L Sbjct: 181 YHYLFKVFSRDLNDVLNAINILDETSLQKKNNISIPFVKQTL 222 >gi|187477231|ref|YP_785255.1| DnaA regulatory inactivator Hda [Bordetella avium 197N] gi|115421817|emb|CAJ48331.1| conserved hypothetical protein [Bordetella avium 197N] Length = 229 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 91/231 (39%), Gaps = 19/231 (8%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 QL S ++ + +A+ + R V L GP+GSG++ L Sbjct: 3 RQLLLDVLPAPAPSLNNFIAGP-NGEALAAARALAP--GRAVYLWGPAGSGRTHLLRGLR 59 Query: 86 -------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD-FNDTQLFHIINSIHQYD 137 S +A++ + + + ++D+ L+D LF + N + Sbjct: 60 PNAVYIDAASGPKLLRQLAEADSTAPMPAI--IAVDDVHLMDKARQAALFALYNRWRESA 117 Query: 138 SS-----LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 ++ L + P+S + DL +RL V ++ D + ADR + Sbjct: 118 ATDRAFALAVAGDRAPMSLPLR-EDLRTRLGWDLVFRLEPLSDADKLSALSAQAADRGLQ 176 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 + ++ +++ ER + L+D +D +L+ G IT +L +L E+Q Sbjct: 177 LAPEVINWMLTHHERDIRKLASLLDALDRYSLATGRPITTALLRAMLAESQ 227 >gi|253997932|ref|YP_003049995.1| Sigma 54 interacting domain-containing protein [Methylovorus sp. SIP3-4] gi|253984611|gb|ACT49468.1| Sigma 54 interacting domain protein [Methylovorus sp. SIP3-4] Length = 204 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 37/209 (17%), Positives = 75/209 (35%), Gaps = 20/209 (9%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW--PSRVVILVGPSGSGKSCLANI 83 +QL S D+ + +A+ + + R + L G +GSGKS L + Sbjct: 2 KQLLLDIQPSALPSLDNFVPG-RNAEALHSLRAALEGQSAQRFIYLWGETGSGKSHLLHA 60 Query: 84 WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT-QLFHIINSIHQYDSSLLM 142 + + + +D+ LL + LF N + + L+ Sbjct: 61 CNRAGEAL---------------GAHVICADDVHLLSNEEQIALFDSYNHLRAGEGVLVA 105 Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 P + + DL +RL ++ D+ + + A R + + ++ Y + Sbjct: 106 AGIAAPTAMQLR-DDLATRLAWGLSYQLHPLSDEEKALALRQHAAARGMRLPDEVLDYCL 164 Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGIT 231 + + R L +D +D +LS +T Sbjct: 165 RHLRRDLPTLVSTLDALDEWSLSYKRPVT 193 >gi|253566260|ref|ZP_04843714.1| chromosomal replication initiator protein dnaA [Bacteroides sp. 3_2_5] gi|251945364|gb|EES85802.1| chromosomal replication initiator protein dnaA [Bacteroides sp. 3_2_5] Length = 476 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 42/271 (15%), Positives = 90/271 (33%), Gaps = 43/271 (15%) Query: 12 VPDKQKNDQP---KNKEEQLFFSFPR-CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV- 66 +P + P + Q P + + + + + + + ++ P++ Sbjct: 108 LPRVDERKAPGLLRAPAVQ-DLD-PHLNPNYNFETFIEGYSNKLSRSVAEAVAENPAKTV 165 Query: 67 ---VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTR--------------- 108 + L G SG GK+ LAN TR + + + Sbjct: 166 FNPLFLHGASGVGKTHLANAI-----GTRIKELYPDKRVLYVSAHLFQVQYTDSVRNNTT 220 Query: 109 ----------KPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 ++++DI FHI N +HQ L++T+ PV Sbjct: 221 NDFINFYQTIDVLIIDDIQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVLLQGME 280 Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215 L +R K V ++ P + + ++ + ++ YI + + S+ E + Sbjct: 281 ERLLTRFKWGMVAELEKPTVELRKNILRNKIHRDGLQFPSEVIDYIAENVNESVRDLEGI 340 Query: 216 VDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 V + + I LA ++++ C+ Sbjct: 341 VISIMAHSTIYNKEIDLDLAQRIVRKVVHCE 371 >gi|53715109|ref|YP_101101.1| chromosomal replication initiation protein [Bacteroides fragilis YCH46] gi|60683067|ref|YP_213211.1| chromosomal replication initiation protein [Bacteroides fragilis NCTC 9343] gi|265766960|ref|ZP_06094789.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 2_1_16] gi|61212532|sp|Q64PL4|DNAA_BACFR RecName: Full=Chromosomal replication initiator protein DnaA gi|81313879|sp|Q5L9D0|DNAA_BACFN RecName: Full=Chromosomal replication initiator protein DnaA gi|52217974|dbj|BAD50567.1| chromosomal replication initiator protein DnaA [Bacteroides fragilis YCH46] gi|60494501|emb|CAH09298.1| putative chromosomal replication initiator protein [Bacteroides fragilis NCTC 9343] gi|263253337|gb|EEZ24813.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 2_1_16] gi|301164582|emb|CBW24141.1| putative chromosomal replication initiator protein [Bacteroides fragilis 638R] Length = 476 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 42/271 (15%), Positives = 91/271 (33%), Gaps = 43/271 (15%) Query: 12 VPDKQKNDQP---KNKEEQLFFSFPR-CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV- 66 +P + P + Q P + + + + + + + ++ P++ Sbjct: 108 LPRVDERKAPGLLRAPAVQ-DLD-PHLNPNYNFETFIEGYSNKLSRSVAEAVAENPAKTV 165 Query: 67 ---VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTR--------------- 108 + L G SG GK+ LAN TR + + + Sbjct: 166 FNPLFLHGASGVGKTHLANAI-----GTRIKELYPDKRVLYVSAHLFQVQYTDSVRNNTT 220 Query: 109 ----------KPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 ++++DI FHI N +HQ L++T+ PV Sbjct: 221 NDFINFYQTIDVLIIDDIQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVLLQGME 280 Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215 L +R K V ++ P + + ++ + ++ YI + + S+ E + Sbjct: 281 ERLLTRFKWGMVAELEKPTVELRKNILRNKIHRDGLQFPSEVIDYIAENVNESVRDLEGI 340 Query: 216 VDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 V + + I LA ++++ +C+ Sbjct: 341 VISIMAHSTIYNKEIDLDLAQRIVRKVVRCE 371 >gi|255319431|ref|ZP_05360646.1| DnaA regulatory inactivator Hda [Acinetobacter radioresistens SK82] gi|255303499|gb|EET82701.1| DnaA regulatory inactivator Hda [Acinetobacter radioresistens SK82] Length = 239 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 86/221 (38%), Gaps = 18/221 (8%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 QL L D + V + + + G +GSGKS L + Sbjct: 6 RQLQLDIELQLDARISDF-SGPSWGPVVDAVRQLHAGLMNRFYIYGAAGSGKSHLLSAIC 64 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKP---------VLLEDIDLLDF---NDTQLFHIINSI 133 D S I SL +L + V L+DI+ + +FH+IN Sbjct: 65 DSYMEVGKSAIKVSLLELLDAPIEAITSLEKYDLVALDDIEAISGVPHWQRAVFHLINYN 124 Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF---LEKVIVKMFADRQ 190 ++ L+ ++R P+ + LPDL SRL A VK+ P+ + ++ + A R Sbjct: 125 NEEGGQLIFSSRFAPMELKLELPDLQSRLTQAVSVKV--PNGSLYADRQALVHSVLARRG 182 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231 + +D+++ Y++ + +++++ L ++ Sbjct: 183 VQLDQQIIDYLLLHGPHQAARLLQTLEQLETLLKGERTRLS 223 >gi|147676336|ref|YP_001210551.1| chromosomal replication initiation protein [Pelotomaculum thermopropionicum SI] gi|146272433|dbj|BAF58182.1| ATPase [Pelotomaculum thermopropionicum SI] Length = 447 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 42/238 (17%), Positives = 90/238 (37%), Gaps = 26/238 (10%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW------- 84 + D +V ++ A + P++ + + G G GK+ L + Sbjct: 111 NPKYTFDTFVVGNSNRFAHAACLAVAESPAKAYNPLFIYGGVGLGKTHLMHAIGQHILEH 170 Query: 85 ----------SDKSRSTRFSNIAKSLDSILIDTRKP---VLLEDIDLLDFND---TQLFH 128 S+K + + I + + +L++DI L + + FH Sbjct: 171 SNKMKVSYVTSEKFTNELINAIKDDKTVEFRNKYRGMDILLVDDIQFLAGKERTQEEFFH 230 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++++ + +++++ P L SR + + I PD + ++ K Sbjct: 231 TFNTLYEANKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDIQPPDLETRIAILRKKSQQ 290 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 +F+ YI R++ ++ E + ++ A G I+ LAAEVLK+ + Sbjct: 291 ENLFVPDDTIFYIANRIQSNIRELEGALIRVIAYASLNGKEISPELAAEVLKDILPPE 348 >gi|284007063|emb|CBA72338.1| chromosomal replication initiator protein [Arsenophonus nasoniae] Length = 461 Score = 129 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 90/235 (38%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + ++ + + + A P + L G +G GK+ L + I + Sbjct: 126 VNPKHTFNNFVEGKSNQLARAAASQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNNIMA 185 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLF 127 K+ + ++ ++ + +ED +D L +D + F Sbjct: 186 RKANAKVVYMHSERFVQDMVKALQNNAIEDFKRYYRSVDALLIDDIQFFANKERSQEEFF 245 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 246 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 305 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + QI + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 306 ENQIQLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 360 >gi|120610651|ref|YP_970329.1| chromosomal replication initiator DnaA [Acidovorax citrulli AAC00-1] gi|120589115|gb|ABM32555.1| Chromosomal replication initiator, DnaA [Acidovorax citrulli AAC00-1] Length = 236 Score = 129 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 48/235 (20%), Positives = 89/235 (37%), Gaps = 22/235 (9%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLID--------SWPSWPSRV---VILVGPSG 74 +QL G + A QA++ + + + P R L G SG Sbjct: 2 KQLALDIGLSTGPTLARFFPG-ANAQALQHLRIAVGEGDAASGAAPVRSPVPTYLWGESG 60 Query: 75 SGKSCLANI----WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD-FNDTQLFH- 128 SGK+ L ++ + + + + L + + VLL+++ L F+ Sbjct: 61 SGKTHLLEAVREALREQGCTVGWLDASVMLPTAFDERWSAVLLDEVHLYSTAQQAAAFNW 120 Query: 129 IINS---IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 IN+ +L P + DL +RL + ++ L D+ V+ + Sbjct: 121 FINAISPAVGAPRWVLAAGELPPADLPLR-DDLRTRLGWGHIFQLHLLDETERRAVLRQE 179 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 R I + + Y++ R R L +L+D++D+ AL IT L +L+ Sbjct: 180 ADARGIALGDDVVNYMLGRFSRDLGSLMQLLDQLDSFALRTQRAITIPLLKTMLE 234 >gi|262379394|ref|ZP_06072550.1| DnaA regulatory inactivator Hda [Acinetobacter radioresistens SH164] gi|262298851|gb|EEY86764.1| DnaA regulatory inactivator Hda [Acinetobacter radioresistens SH164] Length = 235 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 86/221 (38%), Gaps = 18/221 (8%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 QL L D + V + + + G +GSGKS L + Sbjct: 2 RQLQLDIELQLDARISDF-SGPSWGPVVDAVRQLHAGLMNRFYIYGAAGSGKSHLLSAIC 60 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKP---------VLLEDIDLLDF---NDTQLFHIINSI 133 D S I SL +L + V L+DI+ + +FH+IN Sbjct: 61 DSYMEVGKSAIKVSLLELLDAPIEAITSLEKYDLVALDDIEAISGVPHWQRAVFHLINYN 120 Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF---LEKVIVKMFADRQ 190 ++ L+ ++R P+ + LPDL SRL A VK+ P+ + ++ + A R Sbjct: 121 NEEGGQLIFSSRFAPMELKLELPDLQSRLTQAVSVKV--PNGSLYADRQALVHSVLARRG 178 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231 + +D+++ Y++ + +++++ L ++ Sbjct: 179 VQLDQQIIDYLLLHGPHQAARLLQTLEQLETLLKGERTRLS 219 >gi|50085702|ref|YP_047212.1| putative chromosomal replication initiator, DnaA-type [Acinetobacter sp. ADP1] gi|49531678|emb|CAG69390.1| putative chromosomal replication initiator, DnaA-type [Acinetobacter sp. ADP1] Length = 235 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 85/228 (37%), Gaps = 18/228 (7%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 QL L D V + + + G +GSGKS L + Sbjct: 2 RQLQLDIEPQLDARISDF-SGPGWGHVVDAVRQLHAGLMNRFYIYGGAGSGKSHLLSAIC 60 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVL-LEDIDLLDFNDT-----------QLFHIINSI 133 D S I SL +L + + LE DL+ +D +FH+IN Sbjct: 61 DSYLEIGKSAIKVSLLELLDAPIEAITSLERYDLVALDDIEAISGVPHWQKAVFHLINYN 120 Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE---KVIVKMFADRQ 190 ++ L+ ++R P+ + LPDL SRL A VK+ P+ +I+ + R Sbjct: 121 NEVGGQLVFSSRVAPIELRLELPDLQSRLTQAVSVKL--PNGSLFADRQALILSTMSRRG 178 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238 + D ++ Y++ K + +++ L ++ + ++ Sbjct: 179 LQFDPQILDYLLLHGPHQASLLLKTIAQLEKLLKGEKTKLSNATLRQI 226 >gi|206895387|ref|YP_002246434.1| chromosomal replication initiator protein DnaA [Coprothermobacter proteolyticus DSM 5265] gi|206738004|gb|ACI17082.1| chromosomal replication initiator protein DnaA [Coprothermobacter proteolyticus DSM 5265] Length = 543 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 43/254 (16%), Positives = 95/254 (37%), Gaps = 32/254 (12%) Query: 18 NDQP--KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGP 72 +D P K K + L + D+ +V + A + P + + + G Sbjct: 191 SDNPVKKGKPKSLI---RLNPRYTFDEFVVGDSNRLAYAGARAVAENPGKRFNPLFIWGG 247 Query: 73 SGSGKSCLANIW------------------SDKSRSTRFSNIAKSLDSILIDTRKPV--- 111 G GK+ L + +++ + +I K+ + V Sbjct: 248 VGLGKTHLLHAIGNYLLQQQEPDMQVLYITAEEFTNEMVESIKKNSPEDFRAHYRTVDVL 307 Query: 112 LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168 L++DI + + T+ FH N+++Q +++T+ P + L SR + V Sbjct: 308 LIDDIQFIAGKEATQTEFFHTFNTLYQAGKQIVITSDHPPQELTLLEDRLRSRFQQGLTV 367 Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228 I PD + ++ + + + ++ +I + ++ E + K+ LA + + Sbjct: 368 DIQRPDFETRVAILERKAQKEGLDVPSEVIEFIAHAVATNIRELEGALTKVTALATLQNV 427 Query: 229 GITRSLAAEVLKET 242 +T LA + L + Sbjct: 428 PMTLGLAKQALGDV 441 >gi|290473095|ref|YP_003465956.1| DNA replication initiator protein, transcriptional regulator of replication and housekeeping genes [Xenorhabdus bovienii SS-2004] gi|289172389|emb|CBJ79156.1| DNA replication initiator protein, transcriptional regulator of replication and housekeeping genes [Xenorhabdus bovienii SS-2004] Length = 462 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 45/250 (18%), Positives = 99/250 (39%), Gaps = 27/250 (10%) Query: 19 DQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGS 75 D K + E L + + D+ + + + A P + L G +G Sbjct: 113 DNAKAQPE-LSYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGL 171 Query: 76 GKSCLAN-----IWSDKSRS--------TRFSNIAKSLDSILID-------TRKPVLLED 115 GK+ L + I + K+ + ++ K+L + I+ + +L++D Sbjct: 172 GKTHLLHAVGNSIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDD 231 Query: 116 IDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 I + + FH N++ + + +++T+ +P L SR V I Sbjct: 232 IQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEP 291 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232 P+ + +++K + QI + ++A +I +R+ ++ E ++++ A G IT Sbjct: 292 PELETRVAILMKKADENQIQLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITI 351 Query: 233 SLAAEVLKET 242 E L++ Sbjct: 352 DFVREALRDL 361 >gi|294789487|ref|ZP_06754723.1| DnaA regulatory inactivator Hda [Simonsiella muelleri ATCC 29453] gi|294482567|gb|EFG30258.1| DnaA regulatory inactivator Hda [Simonsiella muelleri ATCC 29453] Length = 224 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 91/224 (40%), Gaps = 12/224 (5%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL F L R D L+ +A LI + + + G G+GKS + W Sbjct: 4 QLSLDFD-ELDYPRFDQLLGNANA---ELIYFLQQKHDQFIYIWGEKGAGKSHILQAWVG 59 Query: 87 KS-----RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ-LFHIINSIHQ-YDSS 139 ++ R+ SL + L+ + V ++ I+ L + LF++ N + Sbjct: 60 QALQAGHRAIYIDADKTSLTAHLVADAEYVAIDQIEKLRSREQSVLFNLFNHFRNTRQGN 119 Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199 LL+ + P + DL +R+ ++ D + + RQ+ ID K+ Sbjct: 120 LLLASDFHPAKLNLR-EDLRTRVAYCLAYEVQPLSRDEKINALKHLAKTRQLHIDPKIYE 178 Query: 200 YIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 Y+ + + + + D + +++ G +T +L ++LK+ + Sbjct: 179 YLHDQWRQDMSHLLSIFDDLVAYSVAIGKPLTLNLVKQLLKQQE 222 >gi|300721090|ref|YP_003710358.1| DNA replication initiator protein [Xenorhabdus nematophila ATCC 19061] gi|297627575|emb|CBJ88094.1| DNA replication initiator protein, transcriptional regulator of replication and housekeeping genes [Xenorhabdus nematophila ATCC 19061] Length = 462 Score = 128 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 45/250 (18%), Positives = 99/250 (39%), Gaps = 27/250 (10%) Query: 19 DQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGS 75 D K + E L + + D+ + + + A P + L G +G Sbjct: 113 DNVKTQPE-LSYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGL 171 Query: 76 GKSCLAN-----IWSDKSRS--------TRFSNIAKSLDSILID-------TRKPVLLED 115 GK+ L + I + K+ + ++ K+L + I+ + +L++D Sbjct: 172 GKTHLLHAVGNSIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDD 231 Query: 116 IDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 I + + FH N++ + + +++T+ +P L SR V I Sbjct: 232 IQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEP 291 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232 P+ + +++K + QI + ++A +I +R+ ++ E ++++ A G IT Sbjct: 292 PELETRVAILMKKADENQIQLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITI 351 Query: 233 SLAAEVLKET 242 E L++ Sbjct: 352 DFVREALRDL 361 >gi|239993750|ref|ZP_04714274.1| Chromosomal replication initiator protein dnaA [Alteromonas macleodii ATCC 27126] Length = 551 Score = 128 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 36/234 (15%), Positives = 90/234 (38%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86 D+ + + + A + P + + G +G GK+ L + I ++ Sbjct: 217 NPTYQFDNFVEGKSNQLARAAATQVANNPGGSYNPLFIYGGTGLGKTHLLHAVGNGIVAN 276 Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128 + ++ ++ + +ED +D L +D + FH Sbjct: 277 NGDAKIVYMHSERFVQDMVKALQNNAIEDFKRFYRSVDALLIDDIQFFANKERSQEEFFH 336 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++ + + +++T+ +P L SR + I P+ + ++++ A+ Sbjct: 337 TFNALLEGNQQIILTSDRYPKEIDGVEDRLKSRFGWGLTIAIEPPELETRVAILMRKAAE 396 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 397 NRIHLPNEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 450 >gi|332139411|ref|YP_004425149.1| Chromosomal replication initiator protein dnaA [Alteromonas macleodii str. 'Deep ecotype'] gi|327549433|gb|AEA96151.1| Chromosomal replication initiator protein dnaA [Alteromonas macleodii str. 'Deep ecotype'] Length = 554 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 36/234 (15%), Positives = 90/234 (38%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86 D+ + + + A + P + + G +G GK+ L + I ++ Sbjct: 220 NPTYQFDNFVEGKSNQLARAAATQVANNPGGSYNPLFIYGGTGLGKTHLLHAVGNGIVAN 279 Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128 + ++ ++ + +ED +D L +D + FH Sbjct: 280 NGDAKIVYMHSERFVQDMVKALQNNAIEDFKRFYRSVDALLIDDIQFFANKERSQEEFFH 339 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++ + + +++T+ +P L SR + I P+ + ++++ A+ Sbjct: 340 TFNALLEGNQQIILTSDRYPKEIDGVEDRLKSRFGWGLTIAIEPPELETRVAILMRKAAE 399 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 400 NRIHLPNEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 453 >gi|332830222|gb|EGK02850.1| chromosomal replication initiator protein DnaA [Dysgonomonas gadei ATCC BAA-286] Length = 467 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 42/242 (17%), Positives = 85/242 (35%), Gaps = 31/242 (12%) Query: 30 FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV----VILVGPSGSGKSCLANIWS 85 F L + D+ + + A ++ P + + L G SG GK+ L + Sbjct: 126 FDSQLNLKYTFDNFFEGESNKLARTAGETITKNPGKTAFNPLFLHGTSGVGKTHLCHAIG 185 Query: 86 DK----------------------SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123 + + + R++ ++ ++++DI L + Sbjct: 186 TRIKELYPEKRVLYVSAHLFKIQYADAGRYNTTNDFIN--FYQGIDVLIIDDIHELAGIE 243 Query: 124 ---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 LFHI N +HQ + L++T+ P L +R + KI PD K Sbjct: 244 RTQNTLFHIFNHLHQNNKQLILTSDKSPSELQGVEERLLTRFRWGLTTKIDHPDKGLRLK 303 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 ++ + I + + YI + + + E ++ + +L I LA V+ Sbjct: 304 ILQNKILHDGLSIPEDVVDYIAENVTDNARDLEGIIVSIMAHSLVYNKEIDLPLARRVIG 363 Query: 241 ET 242 + Sbjct: 364 QA 365 >gi|56459113|ref|YP_154394.1| DNA replication initiation ATPase [Idiomarina loihiensis L2TR] gi|61212492|sp|Q5QY39|DNAA_IDILO RecName: Full=Chromosomal replication initiator protein DnaA gi|56178123|gb|AAV80845.1| ATPase involved in DNA replication initiation [Idiomarina loihiensis L2TR] Length = 454 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 38/240 (15%), Positives = 92/240 (38%), Gaps = 26/240 (10%) Query: 29 FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN--- 82 F + D+ + + + A P V + + G +G GK+ L + Sbjct: 114 PFESNIHPEYTFDNFVEGKSNQLARAAAIQVAENPGGVYNPLFVYGGTGLGKTHLLHAVG 173 Query: 83 --IWSDKSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLD---FN 122 I + K + F A+ ++++ + +L++DI + Sbjct: 174 NGIMAHKKDAKVFYIRAERFVQDMVNSIRNSSTNEFKRYYRSVDALLIDDIHFFANKKGS 233 Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 + FH N++ + + ++MT+ +P L SR + I P+ + ++ Sbjct: 234 QEEFFHTFNALLEGNQQIIMTSDLYPKEIDGVEDRLKSRFGWGLTIAIEPPELETRVAIL 293 Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ +R + + ++A +I +R+ ++ E ++++ G IT E L++ Sbjct: 294 MRKADERGLHMPHEVAFFIAKRLRSNVRELEGALNRVVANVQLTGRPITIDFVREALRDL 353 >gi|326317989|ref|YP_004235661.1| DnaA regulatory inactivator Hda [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374825|gb|ADX47094.1| DnaA regulatory inactivator Hda [Acidovorax avenae subsp. avenae ATCC 19860] Length = 236 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 48/235 (20%), Positives = 88/235 (37%), Gaps = 22/235 (9%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLID------SWPSWPSRV-----VILVGPSG 74 +QL G + A QA++ + S + V L G SG Sbjct: 2 KQLALDIGLSTGPTLARFFPG-ANAQALQHLRIAVGEGDAASGTAPVRSPVPTYLWGESG 60 Query: 75 SGKSCLANI----WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD-FNDTQLFH- 128 SGK+ L ++ + + + + L + + VLL+++ L F+ Sbjct: 61 SGKTHLLEAVREALREQGCTVGWLDASVMLPTAFDERWSAVLLDEVHLYSTAQQAAAFNW 120 Query: 129 IINS---IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 IN+ +L P + DL +RL + ++ L D+ V+ + Sbjct: 121 FINAISPAVGAPRWVLAAGELPPADLPLR-DDLRTRLGWGHIFQLHLLDETERRAVLRQE 179 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 R I + + Y++ R R L +L+D++D+ AL IT L +L+ Sbjct: 180 ADARGIALGDDVMNYMLGRFSRDLGSLMQLLDQLDSFALRTQRAITIPLLKTMLE 234 >gi|255011256|ref|ZP_05283382.1| chromosomal replication initiation protein [Bacteroides fragilis 3_1_12] gi|313149067|ref|ZP_07811260.1| chromosomal replication initiator protein dnaA [Bacteroides fragilis 3_1_12] gi|313137834|gb|EFR55194.1| chromosomal replication initiator protein dnaA [Bacteroides fragilis 3_1_12] Length = 475 Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats. Identities = 41/271 (15%), Positives = 90/271 (33%), Gaps = 43/271 (15%) Query: 12 VPDKQKNDQP---KNKEEQLFFSFPR-CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV- 66 +P + P + Q P + + + + + + + ++ P++ Sbjct: 108 LPRVDERKAPGLLRAPAVQ-DLD-PHLNPNYNFETFIEGYSNKLSRSVAEAVAENPAKTV 165 Query: 67 ---VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTR--------------- 108 + L G SG GK+ LAN TR + + + Sbjct: 166 FNPLFLHGASGVGKTHLANAI-----GTRIKELYPDKRVLYVSAHLFQVQYTDSVRNNTT 220 Query: 109 ----------KPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 ++++DI FHI N +HQ L++T+ PV Sbjct: 221 NDFINFYQTIDVLIIDDIQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVLLQGME 280 Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215 L +R K V ++ P + + ++ + ++ YI + + S+ E + Sbjct: 281 ERLLTRFKWGMVAELEKPTVELRKNILRNKIHRDGLQFPSEVIDYIAENVNESVRDLEGI 340 Query: 216 VDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 V + + I LA ++++ + + Sbjct: 341 VISIMAHSTIYNKEIDLDLAQRIVRKVVRSE 371 >gi|317402336|gb|EFV82911.1| hypothetical protein HMPREF0005_00122 [Achromobacter xylosoxidans C54] Length = 233 Score = 127 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 87/229 (37%), Gaps = 17/229 (7%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 QL S ++ + +A+ + + P R + + G +G G+S L + Sbjct: 3 RQLLLDVLPAPAPSLNNFIAGP-NGEALAAVRTLA--PGRALYIWGSAGCGRSHLLRALT 59 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKP-------VLLEDIDLLDFNDTQ-LFHIINSIHQYD 137 + + + ++ V ++D+ L+D + LF + N + Sbjct: 60 ARPDAVYIEAANSANILRVLAEADSKSPMPKFVAVDDVHLMDEHRQAGLFALYNRWRESA 119 Query: 138 SS-----LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 ++ L + +S + DL +RL V ++ D + A+R + Sbjct: 120 ATGRAFALAVAGDRSTLSMPLR-EDLRTRLGWDLVFRLDPLSDADKLAALAAQAAERGLH 178 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + ++ +++ ER + L+D +D +L+ G IT L +L + Sbjct: 179 LAPEIINWMLTHHERDIRKLAALLDALDRYSLATGRPITLPLLRAMLAD 227 >gi|148244412|ref|YP_001219106.1| DnaA family protein [Candidatus Vesicomyosocius okutanii HA] gi|146326239|dbj|BAF61382.1| DnaA family protein [Candidatus Vesicomyosocius okutanii HA] Length = 224 Score = 127 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 91/222 (40%), Gaps = 11/222 (4%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDS-WPSWPSRVVILVGPSGSGKSCLANIWS 85 QL I + + + +Q + ++ + S VV + G SGK+ L + Sbjct: 3 QLGLPLLLNSKILLSNFI-GNKNQQVLDFVNRLFTQKRSAVVFISGTKSSGKTHLLQGCA 61 Query: 86 ----DKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDF-NDTQLFHIINSIHQYD 137 DK + + +I + L +I V ++++D L LF + N Sbjct: 62 FSALDKKLNVAYIDIKQELPKGIISDLTSVDWICIDNVDCLSITQQQALFDLYNRNKPTS 121 Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L++ A + P + L DL +RL A + + +D+ +I + AD+ I I+ K+ Sbjct: 122 VKLIIAASSSPNELNL-LKDLKTRLSLAVAFTLEVLNDEQKILIIERKMADKNININSKV 180 Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 Y+ + R L ++ ++ +L + I+ ++L Sbjct: 181 YHYLFKVFSRDLNDILNVISVLEEASLQQKSNISIPFVKQIL 222 >gi|225028838|ref|ZP_03718030.1| hypothetical protein EUBHAL_03125 [Eubacterium hallii DSM 3353] gi|224953834|gb|EEG35043.1| hypothetical protein EUBHAL_03125 [Eubacterium hallii DSM 3353] Length = 448 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 45/270 (16%), Positives = 100/270 (37%), Gaps = 31/270 (11%) Query: 6 EDYSFFVPDKQKNDQPKNKEEQLFFSFPR----CLGISRDDLLVHSAIEQAVR---LIDS 58 + + D + PK++ +++ + D +V + A + Sbjct: 81 KQFKILFTDS-NSAAPKSEPKKVSVPAEYIGNLNPRYTFDTFVVGPTNKMAHAVSVAVAE 139 Query: 59 WPSWPSRVVILVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDTRKP--- 110 P + L G +G GK+ L + I +++ ++ + LID+ K Sbjct: 140 SPGGAYNPLFLYGGAGLGKTHLMHSIAHHIINNRPDLRVLYVTSEKFTNELIDSLKHDKN 199 Query: 111 ------------VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 +L++DI + + + FH N +H+ +++++ P Sbjct: 200 KEFRDKYRNIDVLLIDDIQFIIGKESTQEEFFHTFNELHEAKKQIVISSDKHPREIATLE 259 Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215 L SR + I PD + ++ K + I++++ Y+ + ++ E Sbjct: 260 ERLRSRFEWGITADIQPPDYETKMAILKKRAELEHLDINQEVMQYVATNINSNIRELEGA 319 Query: 216 VDKMDNLALSRGMGITRSLAAEVLKETQQC 245 ++K+ A +T LA LK+T +C Sbjct: 320 LNKIYVFANLEKKPVTLELAENALKDTIEC 349 >gi|253987484|ref|YP_003038840.1| chromosomal replication initiation protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253778934|emb|CAQ82094.1| chromosomal replication initiator protein dnaA [Photorhabdus asymbiotica] Length = 439 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 90/235 (38%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + D+ + + + A P + L G +G GK+ L + I + Sbjct: 104 VNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNSIMA 163 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLF 127 K+ + ++ ++ + +ED +D L +D + F Sbjct: 164 RKANAKVVYMHSERFVQDMVKALQNNAIEDFKRYYRSVDALLIDDIQFFANKERSQEEFF 223 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 224 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 283 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + +I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 284 ENEIQLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 338 >gi|332991509|gb|AEF01564.1| Chromosomal replication initiator protein dnaA [Alteromonas sp. SN2] Length = 557 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 36/234 (15%), Positives = 90/234 (38%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLAN-----IWSD 86 D+ + + + A + P + + G +G GK+ L + I ++ Sbjct: 223 NPTYQFDNFVEGKSNQLARAAATQVANNPGSSYNPLFIYGGTGLGKTHLLHAVGNGIVAN 282 Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128 + ++ ++ + +ED +D L +D + FH Sbjct: 283 NENAKIVYMHSERFVQDMVKALQNNAIEDFKRFYRSVDALLIDDIQFFANKERSQEEFFH 342 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++ + + +++T+ +P L SR + I P+ + ++++ A+ Sbjct: 343 TFNALLEGNQQIILTSDRYPKEIDGVEDRLKSRFGWGLTIAIEPPELETRVAILMRKAAE 402 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 403 NRIHLPNEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 456 >gi|333029142|ref|ZP_08457203.1| Chromosomal replication initiator protein dnaA [Bacteroides coprosuis DSM 18011] gi|332739739|gb|EGJ70221.1| Chromosomal replication initiator protein dnaA [Bacteroides coprosuis DSM 18011] Length = 470 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 39/262 (14%), Positives = 92/262 (35%), Gaps = 30/262 (11%) Query: 13 PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV----VI 68 P + P+ Q + + + ++ + + + ++ P++ + Sbjct: 113 PRTRIPQAPQAPAIQ-ELDPRLNPDYTFETFIEGNSNKLSRSVAEAVAENPAKTVFNPLF 171 Query: 69 LVGPSGSGKSCLA---------------------NIWSDKSRSTRFSNIAKSLDSILIDT 107 + G SG GK+ LA +++ + + +N T Sbjct: 172 IHGNSGVGKTHLANAIGLRIKERYPEKRVLYVSAHLFQIQYTDSVRNNTTNDF-INFYQT 230 Query: 108 RKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164 ++++DI FHI N +HQ L++T+ PV L +R K Sbjct: 231 IDVLIIDDIQEFAGVVKTQNTFFHIFNHLHQNGKQLILTSDLPPVLLQGMEDRLLTRFKW 290 Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 V ++ P + + ++ + ++ YI + ++ S+ E +V + + Sbjct: 291 GMVAELERPSVELRKDILRNKIHRDGLDFPTEVITYIAENVDDSVRDLEGIVISIMAHST 350 Query: 225 SRGMGITRSLAAEVLKETQQCD 246 I LA ++K+ + + Sbjct: 351 IYNKEIDLDLAQRIVKKVVRSE 372 >gi|262368617|ref|ZP_06061946.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] gi|262316295|gb|EEY97333.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] Length = 234 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 88/228 (38%), Gaps = 18/228 (7%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 QL L D + I + + G +GSGKS L + Sbjct: 2 RQLQLDIEPQLDARISDF-SGPGWGPVIDAIRQLHAGLMNRFYVYGGAGSGKSHLLSAIC 60 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVL-LEDIDLLDFNDT-----------QLFHIINSI 133 D S I SL +L + + LE DL+ +D +FH+IN Sbjct: 61 DSYLDVGKSAIQVSLLELLDAPTEAITSLERFDLVALDDIEAISGVPHWQKAVFHLINYN 120 Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF---LEKVIVKMFADRQ 190 ++ L+ ++R P+ + LPDL SRL A VK+ P+ +++ + + R Sbjct: 121 NEEGGQLVFSSRVAPIELKLELPDLQSRLTQAVSVKV--PNGSLYADRSTLVMSVLSRRG 178 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238 I ID+++ Y++ + ++++ L ++ + ++ Sbjct: 179 IHIDQQIIDYLLAHGPHQTSVLLQSLEQLIQLLKGEKTKLSNANLRQI 226 >gi|145630851|ref|ZP_01786628.1| hypothetical protein CGSHi22421_02616 [Haemophilus influenzae R3021] gi|144983511|gb|EDJ90979.1| hypothetical protein CGSHi22421_02616 [Haemophilus influenzae R3021] Length = 136 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 4/134 (2%) Query: 111 VLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAAT 166 V L+D+ + ND +F + N I +LL+ +A P + V LPDL SRL Sbjct: 2 VCLDDLQSVIGNDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWGE 61 Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 + +++ D+ +V+ R + + A +++ R+ R + + +D +D +L Sbjct: 62 IYQLNSLTDEQKVEVLQHTAYQRGFQLSDETANFLITRLARDMHTLFEALDLLDKASLQA 121 Query: 227 GMGITRSLAAEVLK 240 +T E+L Sbjct: 122 QRNLTIPFVKEILN 135 >gi|154491703|ref|ZP_02031329.1| hypothetical protein PARMER_01314 [Parabacteroides merdae ATCC 43184] gi|218264325|ref|ZP_03478182.1| hypothetical protein PRABACTJOHN_03873 [Parabacteroides johnsonii DSM 18315] gi|154087944|gb|EDN86989.1| hypothetical protein PARMER_01314 [Parabacteroides merdae ATCC 43184] gi|218222093|gb|EEC94743.1| hypothetical protein PRABACTJOHN_03873 [Parabacteroides johnsonii DSM 18315] Length = 462 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 42/264 (15%), Positives = 93/264 (35%), Gaps = 34/264 (12%) Query: 14 DKQKNDQP---KNKEEQLFFSFPR--CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-- 66 K+ D P ++K Q + + D+ ++ ++ P + Sbjct: 105 GKKSADIPSLFESKARQ---DWDSHLNPKYNFDNYFEGTSNRLVRSSSEAIAQEPGKTFN 161 Query: 67 -VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI-------------------- 105 + + G SG GK+ L + ++ + + + L Sbjct: 162 PMFVFGASGVGKTHLCHAIGNRIQEIHPEKKVLYISAHLFTVQYTEAIRKNTTNDFMYFY 221 Query: 106 DTRKPVLLEDI-DLLDFN--DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 ++L+DI +L+ + FHI N +H L++T+ PV L +RL Sbjct: 222 QGVDVLILDDIQELIGKDKTQNTFFHIFNHLHLLGKQLILTSDKAPVDLQGMEERLITRL 281 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 K ++ PD D +K++ + + I + +I + ++ E +V + Sbjct: 282 KWGLTAELDRPDLDLRKKILKNKISHDGVVIPDDVFNFIASNVTENVRDVEGIVASLLAY 341 Query: 223 ALSRGMGITRSLAAEVLKETQQCD 246 + + I L +V+ + + Sbjct: 342 STAFNRMIDLPLTKQVVSRVVKLE 365 >gi|319955761|ref|YP_004167024.1| chromosomal replication initiator protein dnaa [Nitratifractor salsuginis DSM 16511] gi|319418165|gb|ADV45275.1| chromosomal replication initiator protein DnaA [Nitratifractor salsuginis DSM 16511] Length = 442 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 40/232 (17%), Positives = 84/232 (36%), Gaps = 24/232 (10%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWS----DK 87 + + +V S+ + A S P ++ + + G G GK+ L + Sbjct: 104 NPSFTFESFIVGSSNQFAYTTALSVAEKPGKLYNPLFIYGGVGLGKTHLLQAIGNYRLQQ 163 Query: 88 SRSTRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDFND---TQLFHII 130 ++ + L+ L + +L++DI L + +LFH Sbjct: 164 GDQVIYTTLEHFLNKFLSHLQSQTMEKFREHYRNCDLLLIDDIQFLSRKEKTQDELFHTF 223 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N +H ++MT+ P L +R + I P+ + +I K Sbjct: 224 NELHNAGKQIVMTSDRPPKKIAFLEERLRTRFEWGLQADIQPPELETKIAIIQKKCELDG 283 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 I +D+++ YI M ++ E + +++ ++ IT A +K+ Sbjct: 284 IRLDQEIIHYIATHMGDNIREIEGTLIRLNAMSAMLNQPITLEFARNAIKDQ 335 >gi|239996083|ref|ZP_04716607.1| Chromosomal replication initiator, DnaA like protein to DnaA protein Hda [Alteromonas macleodii ATCC 27126] Length = 245 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 44/251 (17%), Positives = 96/251 (38%), Gaps = 44/251 (17%) Query: 26 EQLFFS--FPRCLGISRDDLLVHSAIEQAVRLID-------SWPSWPSRVVILVGP---- 72 QL P D V++ E+ V +++ W P +GP Sbjct: 1 MQLPLPVTLPVDENF---DSFVNTGNEEVVSVLEQIADALPHWREAPE-----LGPLASL 52 Query: 73 -------SGS---GKSCLANIWSDKSRSTRFSNIAKSLDS---------ILIDTRKPVLL 113 GS GKS L + S++ +L++ ++ + L Sbjct: 53 QLPLLTLLGSTAIGKSHLLFATCHQLAEKSVSHLYLNLNNYEAWSLDIFEGLENLSLIAL 112 Query: 114 EDIDLLDFN---DTQLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAATVVK 169 ++I + + + LF ++N + + ++++ ++ P + LPDL SRL + Sbjct: 113 DNIHAIAGDLRWEEALFDLLNRVIETKQTMVLCSSHLGPSNPAFVLPDLRSRLAWGVIYH 172 Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229 ++ DD+ E+ + A+R + + + +++ ER L L+ ++D +L Sbjct: 173 VNQLDDNGREEAVRLRAAERGLKLSNQALQFLLHHSERDLKSLMSLLARLDTRSLQEQKR 232 Query: 230 ITRSLAAEVLK 240 ++ + L Sbjct: 233 LSVGMVKRELN 243 >gi|313674130|ref|YP_004052126.1| chromosomal replication initiator protein dnaa [Marivirga tractuosa DSM 4126] gi|312940828|gb|ADR20018.1| chromosomal replication initiator protein DnaA [Marivirga tractuosa DSM 4126] Length = 471 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 42/280 (15%), Positives = 93/280 (33%), Gaps = 42/280 (15%) Query: 6 EDYSFFVPDKQKNDQPKNKEEQLFF--------SFP-----RCLGISRDDLLVHSAIEQA 52 + ++ +P+ K+++PK ++ + + D + A Sbjct: 91 KPFTINLPNNNKSNKPKEQQREQPLNPFALNGVDLSQQNSQLNPNYTFDTFIEGDCNRLA 150 Query: 53 ----VRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK-----SRSTRFSNIAKSLDSI 103 + +++ G G GK+ L ++ + ++ + Sbjct: 151 RSAGYAVAKKPGITSFNPLMIYGGVGLGKTHLVQAIGNEIKDTLNGKFVLYVSSEKFTNQ 210 Query: 104 LIDT---------------RKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTAR 145 ID ++++D+ L + FHI N +HQ ++MT+ Sbjct: 211 FIDALRNNKIQDFSNYYLHIDALIIDDVQFLGGKERTQEIFFHIFNHLHQNGKQIIMTSD 270 Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 P L SR K + PD + +I I I + + Y+ + Sbjct: 271 RPPRDLKGLEDRLLSRFKWGLTADLQQPDLETRIAIIQNKMESDGIHIPEDVIEYLAYSV 330 Query: 206 ERSLVFAEKLVDKM-DNLALSRGMGITRSLAAEVLKETQQ 244 + ++ E ++ + + +L+R I LA + LK Sbjct: 331 DTNIRELEGVLISLIAHASLNRK-EIDLELAKQTLKNIVH 369 >gi|126172258|ref|YP_001048407.1| chromosomal replication initiation protein [Shewanella baltica OS155] gi|152998556|ref|YP_001364237.1| chromosomal replication initiation protein [Shewanella baltica OS185] gi|160873127|ref|YP_001552443.1| chromosomal replication initiation protein [Shewanella baltica OS195] gi|217971217|ref|YP_002355968.1| chromosomal replication initiation protein [Shewanella baltica OS223] gi|304412705|ref|ZP_07394308.1| chromosomal replication initiator protein DnaA [Shewanella baltica OS183] gi|307305830|ref|ZP_07585576.1| chromosomal replication initiator protein DnaA [Shewanella baltica BA175] gi|166215328|sp|A3CYH5|DNAA_SHEB5 RecName: Full=Chromosomal replication initiator protein DnaA gi|166215329|sp|A6WH85|DNAA_SHEB8 RecName: Full=Chromosomal replication initiator protein DnaA gi|189083277|sp|A9KU72|DNAA_SHEB9 RecName: Full=Chromosomal replication initiator protein DnaA gi|254777912|sp|B8E3P4|DNAA_SHEB2 RecName: Full=Chromosomal replication initiator protein DnaA gi|125995463|gb|ABN59538.1| chromosomal replication initiator protein DnaA [Shewanella baltica OS155] gi|151363174|gb|ABS06174.1| chromosomal replication initiator protein DnaA [Shewanella baltica OS185] gi|160858649|gb|ABX47183.1| chromosomal replication initiator protein DnaA [Shewanella baltica OS195] gi|217496352|gb|ACK44545.1| chromosomal replication initiator protein DnaA [Shewanella baltica OS223] gi|304348915|gb|EFM13330.1| chromosomal replication initiator protein DnaA [Shewanella baltica OS183] gi|306911323|gb|EFN41749.1| chromosomal replication initiator protein DnaA [Shewanella baltica BA175] gi|315265352|gb|ADT92205.1| chromosomal replication initiator protein DnaA [Shewanella baltica OS678] Length = 462 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 36/235 (15%), Positives = 90/235 (38%), Gaps = 28/235 (11%) Query: 35 CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN-----IWS 85 D+ + + A+++ ++ P + L G +G GK+ L + I Sbjct: 128 NPSYQFDNFVEGKSNQLGKAAALQVAEN-PGGAYNPLFLYGGTGLGKTHLLHAVGNGIIK 186 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLF 127 + + ++ ++ + +E+ +D L +D + F Sbjct: 187 NNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQFFANKDRSQEEFF 246 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + ++++ Sbjct: 247 HTFNALLEGNHQIILTSDRYPKEIDGVEDRLKSRFGWGLTVAIEPPELETRVAILMRKAQ 306 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 307 ESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 361 >gi|29347553|ref|NP_811056.1| chromosomal replication initiation protein [Bacteroides thetaiotaomicron VPI-5482] gi|253572014|ref|ZP_04849418.1| chromosomal replication initiator protein dnaA [Bacteroides sp. 1_1_6] gi|298383755|ref|ZP_06993316.1| ATPase involved in DNA replication initiation [Bacteroides sp. 1_1_14] gi|38257553|sp|Q8A5U5|DNAA_BACTN RecName: Full=Chromosomal replication initiator protein DnaA gi|29339453|gb|AAO77250.1| chromosomal replication initiator protein dnaA [Bacteroides thetaiotaomicron VPI-5482] gi|251838194|gb|EES66281.1| chromosomal replication initiator protein dnaA [Bacteroides sp. 1_1_6] gi|298263359|gb|EFI06222.1| ATPase involved in DNA replication initiation [Bacteroides sp. 1_1_14] Length = 470 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 39/242 (16%), Positives = 82/242 (33%), Gaps = 28/242 (11%) Query: 33 PR-CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV----VILVGPSGSGKSCLANIWSDK 87 P + ++ + + + + + ++ P+ + L G SG GK+ LAN K Sbjct: 130 PHLNPNYNFENFIEGYSNKLSRSVAEAVAQNPAGTAFNPLFLYGASGVGKTHLANAIGTK 189 Query: 88 SRSTRFSNIAKSLDSILID--------------------TRKPVLLEDIDLLDF---NDT 124 + + + L T ++++DI Sbjct: 190 IKELYADKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQTIDVLIIDDIQEFAGVTKTQN 249 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 FHI N +HQ L++T+ PV L +R K V ++ P + + ++ Sbjct: 250 TFFHIFNHLHQNGKQLILTSDRAPVLLQGMEERLLTRFKWGMVAELEKPTVELRKNILRN 309 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 + ++ YI + + S+ E +V + + I LA ++ Sbjct: 310 KIHRDGLQFPPEVIDYIAENVNESVRDLEGIVIAIMARSTIFNKEIDLDLAQHIVHGVVH 369 Query: 245 CD 246 + Sbjct: 370 NE 371 >gi|270264119|ref|ZP_06192386.1| chromosomal replication initiator protein DnaA [Serratia odorifera 4Rx13] gi|270041768|gb|EFA14865.1| chromosomal replication initiator protein DnaA [Serratia odorifera 4Rx13] Length = 463 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 44/258 (17%), Positives = 99/258 (38%), Gaps = 27/258 (10%) Query: 11 FVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---V 67 P + D + E L + + D+ + + + A P + Sbjct: 106 VAPSRPSWDNAAPQPE-LSYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPL 164 Query: 68 ILVGPSGSGKSCLAN-----IWSDKSRS--------TRFSNIAKSLDSILID-------T 107 L G +G GK+ L + I + K+ + ++ K+L + I+ + Sbjct: 165 FLYGGTGLGKTHLLHAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRS 224 Query: 108 RKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164 +L++DI + + FH N++ + + +++T+ +P L SR Sbjct: 225 VDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGW 284 Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 V I P+ + +++K + I + ++A +I +R+ ++ E ++++ A Sbjct: 285 GLTVAIEPPELETRVAILMKKADENNIRLPGEVAFFIAKRLRSNVRELEGALNRVIANAN 344 Query: 225 SRGMGITRSLAAEVLKET 242 G IT E L++ Sbjct: 345 FTGRAITIDFVREALRDL 362 >gi|170724371|ref|YP_001758397.1| chromosomal replication initiation protein [Shewanella woodyi ATCC 51908] gi|226735847|sp|B1KCX3|DNAA_SHEWM RecName: Full=Chromosomal replication initiator protein DnaA gi|169809718|gb|ACA84302.1| chromosomal replication initiator protein DnaA [Shewanella woodyi ATCC 51908] Length = 462 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 36/235 (15%), Positives = 91/235 (38%), Gaps = 28/235 (11%) Query: 35 CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN-----IWS 85 ++ + + A+++ ++ P + L G +G GK+ L + I Sbjct: 128 NPTYQFENFVEGKSNQLGKAAALQVAEN-PGGAYNPLFLYGGTGLGKTHLLHAVGNGIIK 186 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLF 127 +K + ++ ++ + +E+ +D L +D + F Sbjct: 187 NKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQFFANKDRSQEEFF 246 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + ++++ Sbjct: 247 HTFNALLEGNHQIILTSDRYPKEIDGVEDRLKSRFGWGLTVAIEPPELETRVAILMRKAQ 306 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 307 ESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 361 >gi|83588876|ref|YP_428885.1| chromosomal replication initiation protein [Moorella thermoacetica ATCC 39073] gi|83571790|gb|ABC18342.1| chromosomal replication initiator protein DnaA [Moorella thermoacetica ATCC 39073] Length = 442 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 41/257 (15%), Positives = 89/257 (34%), Gaps = 27/257 (10%) Query: 12 VPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP---SRVVI 68 P N + + + E P + + +V ++ A + P + Sbjct: 84 FPLSSSNQRQEPELEDPSLP-PLNPKYTFETFVVGNSNRFAHAACLAVAESPASSYNPLF 142 Query: 69 LVGPSGSGKSCLANIWSDKSRSTR-----------------FSNIAKSLDSILIDTRKPV 111 + G G GK+ L + R + I + + Sbjct: 143 IYGGVGLGKTHLMQAIGHRVRQHLPELRVMYISSEKFTNDLINAIKDKATEQFRTKYRNI 202 Query: 112 ---LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 L++DI L + + FH N +++ + +++++ P L SR + Sbjct: 203 DVLLIDDIQFLAKKESTQEEFFHTFNHLYEANKQIIISSDRPPKEIPTLEDRLRSRFEWG 262 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 + I PD + ++ K I + ++ +I Q+++ ++ E + ++ A Sbjct: 263 LITDIQPPDLETRMAILRKKAVAEGINLPDEVMFFIAQKIDSNIRELEGALIRVAAYANF 322 Query: 226 RGMGITRSLAAEVLKET 242 IT LA E+LK+ Sbjct: 323 TKKEITPGLAEEILKDV 339 >gi|325102758|ref|YP_004272412.1| chromosomal replication initiator protein DnaA [Pedobacter saltans DSM 12145] gi|324971606|gb|ADY50590.1| chromosomal replication initiator protein DnaA [Pedobacter saltans DSM 12145] Length = 475 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 40/260 (15%), Positives = 87/260 (33%), Gaps = 39/260 (15%) Query: 10 FFVPDKQKND-QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-- 66 F +P +K P QL + ++ + A + + P Sbjct: 124 FVIPGLKKLQVDP-----QL------NPNYTFENFIEGDCNRLARSAGYAVAAKPGGTSF 172 Query: 67 --VILVGPSGSGKSCLANIWSDKSRST--------------------RFSNIAKSLDSIL 104 +++ G G GK+ LA ++ ++ N + Sbjct: 173 NPLMIYGGVGLGKTHLAQAIGNEIKANMPDKLVICVSCEKFCQQFVDSLKNNTINDFVNF 232 Query: 105 IDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161 ++++D+ D FHI N +HQ L++T+ P L SR Sbjct: 233 YQAMDVIIMDDVHNFAGKDKTQDIFFHIFNHLHQSGKQLILTSDKAPKDLAGLEERLLSR 292 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 K +++PD + ++ K I + + + Y+ ++ ++ E + + Sbjct: 293 FKWGLSADLTVPDIETRMAILKKKMYQDGIELPEDVIEYVAHNIDNNVRELEGAMVSLLA 352 Query: 222 LALSRGMGITRSLAAEVLKE 241 + + +LA ++LK Sbjct: 353 QSTLNKKEVDLALAKQMLKN 372 >gi|198283684|ref|YP_002220005.1| DnaA regulatory inactivator Hda [Acidithiobacillus ferrooxidans ATCC 53993] gi|198248205|gb|ACH83798.1| DnaA regulatory inactivator Hda [Acidithiobacillus ferrooxidans ATCC 53993] Length = 237 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 41/226 (18%), Positives = 76/226 (33%), Gaps = 16/226 (7%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-VILVGPSGSGKSCLANI- 83 Q + + A+ + + P + + L GP G GKS L Sbjct: 5 RQRILPLGVQAPATLEGYYPCP-NAAALHAVLKLVAEPQGLCLYLYGPGGVGKSHLLLGA 63 Query: 84 ------WSDKSRSTRFSNIAKSLDSI----LIDTRKPVLLEDIDLLDFN---DTQLFHII 130 W+ + + + + + L++I++ +T LF + Sbjct: 64 ASALAGWTPYMDCGDVPQLFNRIKDLEGFSSLVAAPLLCLDNIEVWAGQRDKETFLFDLY 123 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N +L+ R P LPD SR A V + LPDD ++ +M R Sbjct: 124 NERMSNGRPMLLAGRAAPRFLDWALPDWASRASACLQVALRLPDDTERMAILQEMAQRRG 183 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236 + I + A Y+++ R + L+ +D + +T Sbjct: 184 LQIGVEAAHYLLRHHARDPRTLDGLLTILDAGSWEHQREVTIPFIR 229 >gi|120596834|ref|YP_961408.1| chromosomal replication initiation protein [Shewanella sp. W3-18-1] gi|146291112|ref|YP_001181536.1| chromosomal replication initiation protein [Shewanella putrefaciens CN-32] gi|166215331|sp|A4Y1A4|DNAA_SHEPC RecName: Full=Chromosomal replication initiator protein DnaA gi|166215333|sp|A1RDX7|DNAA_SHESW RecName: Full=Chromosomal replication initiator protein DnaA gi|120556927|gb|ABM22854.1| chromosomal replication initiator protein DnaA [Shewanella sp. W3-18-1] gi|145562802|gb|ABP73737.1| chromosomal replication initiator protein DnaA [Shewanella putrefaciens CN-32] gi|319424418|gb|ADV52492.1| chromosomal replication initiator protein DnaA [Shewanella putrefaciens 200] Length = 461 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 36/235 (15%), Positives = 90/235 (38%), Gaps = 28/235 (11%) Query: 35 CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN-----IWS 85 D+ + + A+++ ++ P + L G +G GK+ L + I Sbjct: 127 NPTYQFDNFVEGKSNQLGKAAALQVAEN-PGGAYNPLFLYGGTGLGKTHLLHAVGNGIIK 185 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLF 127 + + ++ ++ + +E+ +D L +D + F Sbjct: 186 NNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQFFANKDRSQEEFF 245 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + ++++ Sbjct: 246 HTFNALLEGNHQIILTSDRYPKEIDGVEDRLKSRFGWGLTVAIEPPELETRVAILMRKAQ 305 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 306 ESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 360 >gi|332883707|gb|EGK03987.1| chromosomal replication initiator protein DnaA [Dysgonomonas mossii DSM 22836] Length = 467 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 39/242 (16%), Positives = 83/242 (34%), Gaps = 31/242 (12%) Query: 30 FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV----VILVGPSGSGKSCLANIWS 85 F + D+ + + A ++ P + + + G SG GK+ L + Sbjct: 126 FDSQLNNKYTFDNFFEGESNKLARTAGETITRNPGKTAFNPLFVHGTSGVGKTHLCHAIG 185 Query: 86 DK----------------------SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123 + + + R++ ++ ++++DI L + Sbjct: 186 NSIKEQYPEKRVLYVSAHLFKVQYADAGRYNTTNDFIN--FYQGIDVLIIDDIHELAGIE 243 Query: 124 ---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 LFHI N +HQ + L++T P L +R + K+ PD K Sbjct: 244 KTQNTLFHIFNHLHQNNKQLILTCDKSPSELHGVEERLLTRFRWGLTTKVDNPDKQLRLK 303 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 ++ + I + + YI + + + E ++ + +L I LA V+ Sbjct: 304 ILQNKILHDGLSIPEDVVDYIAENVTDNARDLEGIIVSIMAHSLVYNKEIDLPLARRVIG 363 Query: 241 ET 242 + Sbjct: 364 QA 365 >gi|70725002|ref|YP_251916.1| chromosomal replication initiation protein [Staphylococcus haemolyticus JCSC1435] gi|123762366|sp|Q4LAL5|DNAA_STAHJ RecName: Full=Chromosomal replication initiator protein DnaA gi|68445726|dbj|BAE03310.1| chromosomal replication initiator protein [Staphylococcus haemolyticus JCSC1435] Length = 451 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 46/262 (17%), Positives = 101/262 (38%), Gaps = 35/262 (13%) Query: 16 QKNDQPKNKEEQLFFSFPRC------LGISRDDLLVHSAIE---QAVRLIDSWPSWPSRV 66 +K++ P + Q+ + + D ++ A + P+ Sbjct: 91 RKSNTPSEPQRQI-IEYGHEGTDQFNTHNTFDTFVIGPGNRFPHAASLAVAEAPAQAYNP 149 Query: 67 VILVGPSGSGKSCLANIW-----SDKSRSTRFSNIAKSLDSILIDTRK------------ 109 + + G G GK+ L + S++ + ++ + I + + Sbjct: 150 LFIYGGVGLGKTHLMHAIGHHVLSNQPNAKVLYTSSEKFTNDFIKSIRNNEPEAFREKYR 209 Query: 110 ---PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRL 162 +L++DI + + + FH N +HQ +++++ P L D L SR Sbjct: 210 NIDVLLIDDIQFIQNKEQTQEEFFHTFNELHQNKKQIVISSDRPPKEIA-KLEDRLRSRF 268 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 + +V I+ PD + ++ K + + I + YI +++ ++ E + ++ Sbjct: 269 EWGLIVDITPPDYETRMAILQKKIEEENLEIPAEALNYIANQIQSNIRELEGALTRLLAY 328 Query: 223 ALSRGMGITRSLAAEVLKETQQ 244 + +G IT LAAE LK+ Q Sbjct: 329 SKLQGRPITTELAAEALKDIIQ 350 >gi|113968347|ref|YP_732140.1| chromosomal replication initiation protein [Shewanella sp. MR-4] gi|123130898|sp|Q0HPD4|DNAA_SHESM RecName: Full=Chromosomal replication initiator protein DnaA gi|113883031|gb|ABI37083.1| chromosomal replication initiator protein DnaA [Shewanella sp. MR-4] Length = 460 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 36/235 (15%), Positives = 90/235 (38%), Gaps = 28/235 (11%) Query: 35 CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN-----IWS 85 D+ + + A+++ ++ P + L G +G GK+ L + I Sbjct: 126 NPTYQFDNFVEGKSNQLGKAAALQVAEN-PGGAYNPLFLYGGTGLGKTHLLHAVGNGIIK 184 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLF 127 + + ++ ++ + +E+ +D L +D + F Sbjct: 185 NNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQFFANKDRSQEEFF 244 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + ++++ Sbjct: 245 HTFNALLEGNHQIILTSDRYPKEIDGVEDRLKSRFGWGLTVAIEPPELETRVAILMRKAQ 304 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 305 ESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 359 >gi|114045514|ref|YP_736064.1| chromosomal replication initiation protein [Shewanella sp. MR-7] gi|123131884|sp|Q0I0U8|DNAA_SHESR RecName: Full=Chromosomal replication initiator protein DnaA gi|113886956|gb|ABI41007.1| chromosomal replication initiator protein DnaA [Shewanella sp. MR-7] Length = 460 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 36/235 (15%), Positives = 90/235 (38%), Gaps = 28/235 (11%) Query: 35 CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN-----IWS 85 D+ + + A+++ ++ P + L G +G GK+ L + I Sbjct: 126 NPTYQFDNFVEGKSNQLGKAAALQVAEN-PGGAYNPLFLYGGTGLGKTHLLHAVGNGIIK 184 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLF 127 + + ++ ++ + +E+ +D L +D + F Sbjct: 185 NNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQFFANKDRSQEEFF 244 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + ++++ Sbjct: 245 HTFNALLEGNHQIILTSDRYPKEIDGVEDRLKSRFGWGLTVAIEPPELETRVAILMRKAQ 304 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 305 ESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 359 >gi|218667999|ref|YP_002426314.1| hypothetical protein AFE_1901 [Acidithiobacillus ferrooxidans ATCC 23270] gi|218520212|gb|ACK80798.1| conserved hypothetical protein [Acidithiobacillus ferrooxidans ATCC 23270] Length = 236 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 41/226 (18%), Positives = 76/226 (33%), Gaps = 16/226 (7%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-VILVGPSGSGKSCLANI- 83 Q + + A+ + + P + + L GP G GKS L Sbjct: 4 RQRILPLGVQAPATLEGYYPCP-NAAALHAVLKLVAEPQGLCLYLYGPGGVGKSHLLLGA 62 Query: 84 ------WSDKSRSTRFSNIAKSLDSI----LIDTRKPVLLEDIDLLDFN---DTQLFHII 130 W+ + + + + + L++I++ +T LF + Sbjct: 63 ASALAGWTPYMDCGDVPQLFNRIKDLEGFSSLVAAPLLCLDNIEVWAGQRDKETFLFDLY 122 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N +L+ R P LPD SR A V + LPDD ++ +M R Sbjct: 123 NERMSNGRPMLLAGRAAPRFLDWALPDWASRASACLQVALRLPDDTERMAILQEMAQRRG 182 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236 + I + A Y+++ R + L+ +D + +T Sbjct: 183 LQIGVEAAHYLLRHHARDPRTLDGLLTILDAGSWEHQREVTIPFIR 228 >gi|152989754|ref|YP_001355476.1| chromosomal replication initiation protein [Nitratiruptor sp. SB155-2] gi|151421615|dbj|BAF69119.1| chromosome replication initiator protein DnaA [Nitratiruptor sp. SB155-2] Length = 443 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 43/234 (18%), Positives = 90/234 (38%), Gaps = 24/234 (10%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD----K 87 + ++ +V S+ + A S P + + + G G GK+ L + + K Sbjct: 105 NPTYTFENFVVGSSNQFAYTAALSVAEKPGKAYNPLFIYGGVGLGKTHLLHAIGNFNIKK 164 Query: 88 SRSTRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDFND---TQLFHII 130 + ++ I + ++ R +L++D+ L + + FH Sbjct: 165 EKVVIYATIEQFMNDFTYHLRNKTIERFREKYRQCDILLIDDVQFLSGKERTQEEFFHTF 224 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N +H +++T+ P L SR + + I P+ + +I K Sbjct: 225 NELHNDKKQIVLTSDQHPKKIAGLEDRLKSRFEWGLIADIQPPELETKIAIIKKKCELDG 284 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 I +D ++ YI M+ ++ E ++ K++ + IT LA VL E ++ Sbjct: 285 INLDDEIVNYIASHMDSNIREIEGVIIKLNAYSSLVNQKITLDLAKNVLGELKK 338 >gi|114778882|ref|ZP_01453679.1| chromosomal replication initiator protein dnaA [Mariprofundus ferrooxydans PV-1] gi|114550851|gb|EAU53417.1| chromosomal replication initiator protein dnaA [Mariprofundus ferrooxydans PV-1] Length = 469 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 40/237 (16%), Positives = 86/237 (36%), Gaps = 25/237 (10%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS----DK 87 + ++ +V S E A + + P + L G G GK+ L N + K Sbjct: 136 DPRFTFENFIVGSGNEFCHAAAQAVAEKPGAIYNPLYLYGGVGLGKTHLINAVANALISK 195 Query: 88 SRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHI 129 + + + LI + ++++DI + D + FH Sbjct: 196 NNYRIAYRTGERFTNELIQAIRNGSTDNFRNQYRQVDVLIIDDIQFIAGKDRTQEEFFHT 255 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N++++ +++T+ P + L SR V I PD + ++ Sbjct: 256 FNALYEIKKQIILTSDRSPRDLTNLMERLRSRFNWGLVADIQPPDLETRLAILSSKAELA 315 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + +D+ +A + R+ ++ E + ++ A G I + A VL++ + Sbjct: 316 GVHMDRDVANLLATRITNNVRELEGALTRLTAHATLTGRTIDVTFARHVLRDLLHEE 372 >gi|157368281|ref|YP_001476270.1| chromosomal replication initiation protein [Serratia proteamaculans 568] gi|167016905|sp|A8G7Q2|DNAA_SERP5 RecName: Full=Chromosomal replication initiator protein DnaA gi|157320045|gb|ABV39142.1| chromosomal replication initiator protein DnaA [Serratia proteamaculans 568] Length = 463 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 44/256 (17%), Positives = 99/256 (38%), Gaps = 27/256 (10%) Query: 13 PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VIL 69 P + D + E L + + D+ + + + A P + L Sbjct: 108 PSRPSWDNAAPQPE-LSYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFL 166 Query: 70 VGPSGSGKSCLAN-----IWSDKSRS--------TRFSNIAKSLDSILID-------TRK 109 G +G GK+ L + I + K+ + ++ K+L + I+ + Sbjct: 167 YGGTGLGKTHLLHAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVD 226 Query: 110 PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 +L++DI + + FH N++ + + +++T+ +P L SR Sbjct: 227 ALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGL 286 Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 V I P+ + +++K + I + ++A +I +R+ ++ E ++++ A Sbjct: 287 TVAIEPPELETRVAILMKKADENNIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFT 346 Query: 227 GMGITRSLAAEVLKET 242 G IT E L++ Sbjct: 347 GRAITIDFVREALRDL 362 >gi|163855129|ref|YP_001629427.1| DnaA regulatory inactivator Hda [Bordetella petrii DSM 12804] gi|163258857|emb|CAP41156.1| Chromosomal replication initiator protein dnaA [Bordetella petrii] Length = 233 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 71/188 (37%), Gaps = 14/188 (7%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------VLLEDIDLL 119 V L G +G G+S L + + + + V ++D+ + Sbjct: 41 VYLWGAAGCGRSHLLRGLAAVPGAMYIDAAQGAQALRQLAGADSAAAMPTVVAIDDVHRM 100 Query: 120 D-FNDTQLFHIINSIHQYDSS-----LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 D LF + N + ++ L + P+S + DL +RL V ++ Sbjct: 101 DDARQAGLFALYNRWRECAATSRAFALAVAGDRAPLSMPLR-EDLRTRLGWDLVFRLEPL 159 Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233 D + A+R + + ++ +++ ER + L+D +D +L+ G IT Sbjct: 160 SDADKRAALAAQAAERGLQLAPEVIQWMLTHRERDIRKLAALLDALDRYSLATGRPITIP 219 Query: 234 LAAEVLKE 241 L +L + Sbjct: 220 LLRAMLAD 227 >gi|119773155|ref|YP_925895.1| chromosomal replication initiation protein [Shewanella amazonensis SB2B] gi|166215327|sp|A1S1G9|DNAA_SHEAM RecName: Full=Chromosomal replication initiator protein DnaA gi|119765655|gb|ABL98225.1| chromosomal replication initiator protein DnaA [Shewanella amazonensis SB2B] Length = 457 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 36/235 (15%), Positives = 90/235 (38%), Gaps = 28/235 (11%) Query: 35 CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN-----IWS 85 D+ + + A+++ ++ P + L G +G GK+ L + I Sbjct: 123 NPTYQFDNFVEGKSNQLGKAAALQVAEN-PGGAYNPLFLYGGTGLGKTHLLHAVGNGIIK 181 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLF 127 + + ++ ++ + +E+ +D L +D + F Sbjct: 182 NNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQFFANKDRSQEEFF 241 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + ++++ Sbjct: 242 HTFNALLEGNHQIILTSDRYPKEIDGVEDRLKSRFGWGLTVAIEPPELETRVAILMRKAQ 301 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 302 ESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 356 >gi|238765484|ref|ZP_04626403.1| Chromosomal replication initiator protein dnaA [Yersinia kristensenii ATCC 33638] gi|238696308|gb|EEP89106.1| Chromosomal replication initiator protein dnaA [Yersinia kristensenii ATCC 33638] Length = 463 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + D+ + + + A P + L G +G GK+ L + I + Sbjct: 128 VNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIIA 187 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K+ + ++ K+L + I+ + +L++DI + + F Sbjct: 188 RKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 247 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 248 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 307 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 308 ENNIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 362 >gi|24371608|ref|NP_715650.1| chromosomal replication initiation protein [Shewanella oneidensis MR-1] gi|38257603|sp|Q8EKT2|DNAA_SHEON RecName: Full=Chromosomal replication initiator protein DnaA gi|24345358|gb|AAN53095.1|AE015452_8 chromosomal replication initiator protein DnaA [Shewanella oneidensis MR-1] Length = 460 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 36/235 (15%), Positives = 90/235 (38%), Gaps = 28/235 (11%) Query: 35 CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN-----IWS 85 D+ + + A+++ ++ P + L G +G GK+ L + I Sbjct: 126 NPTYQFDNFVEGKSNQLGKAAALQVAEN-PGGAYNPLFLYGGTGLGKTHLLHAVGNGIIK 184 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLF 127 + + ++ ++ + +E+ +D L +D + F Sbjct: 185 NNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQFFANKDRSQEEFF 244 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + ++++ Sbjct: 245 HTFNALLEGNHQIILTSDRYPKEIDGVEDRLKSRFGWGLTVAIEPPELETRVAILMRKAQ 304 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 305 ESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 359 >gi|169632704|ref|YP_001706440.1| putative chromosomal replication initiator, DnaA-type [Acinetobacter baumannii SDF] gi|239501016|ref|ZP_04660326.1| putative chromosomal replication initiator, DnaA-type [Acinetobacter baumannii AB900] gi|260549334|ref|ZP_05823554.1| DnaA regulatory inactivator Hda [Acinetobacter sp. RUH2624] gi|169151496|emb|CAP00259.1| putative chromosomal replication initiator, DnaA-type [Acinetobacter baumannii] gi|260407740|gb|EEX01213.1| DnaA regulatory inactivator Hda [Acinetobacter sp. RUH2624] Length = 232 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 85/228 (37%), Gaps = 21/228 (9%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 QL L D V + + + G +G+GKS L + Sbjct: 2 RQLQLDIEPQLDARISDF-SGPGWGHVVDAVRQLHAGLVNRFYIYGGAGTGKSHLLSAIC 60 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPV-LLEDIDLLDFNDT-----------QLFHIINSI 133 D S I SL +L + + LE DL+ +D +FH++N Sbjct: 61 DSYLEVGKSAIKVSLLELLDAPIEAITCLEHYDLVALDDIESISGVPHWQKAVFHLMN-- 118 Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF---LEKVIVKMFADRQ 190 ++ L+ ++R P+ + LPDL SRL A VK+ P ++ + A R Sbjct: 119 -NHEGQLVFSSRVAPIELKLELPDLQSRLTQAVSVKV--PSGSLYADRYALVTSVMARRG 175 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238 I D+++ Y++ + V +++ L ++ + ++ Sbjct: 176 IHFDQQIVDYLLLHGPHQASVLLQTVAQLEKLLKGEKTKLSNATLRQI 223 >gi|238759584|ref|ZP_04620746.1| Chromosomal replication initiator protein dnaA [Yersinia aldovae ATCC 35236] gi|238702243|gb|EEP94798.1| Chromosomal replication initiator protein dnaA [Yersinia aldovae ATCC 35236] Length = 462 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + D+ + + + A P + L G +G GK+ L + I + Sbjct: 127 VNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIIA 186 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K+ + ++ K+L + I+ + +L++DI + + F Sbjct: 187 RKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 246 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 247 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 306 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 307 ENNIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 361 >gi|294138802|ref|YP_003554780.1| chromosomal replication initiator protein DnaA [Shewanella violacea DSS12] gi|293325271|dbj|BAJ00002.1| chromosomal replication initiator protein DnaA [Shewanella violacea DSS12] Length = 462 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 35/235 (14%), Positives = 91/235 (38%), Gaps = 28/235 (11%) Query: 35 CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--- 87 ++ + + A+++ ++ P + L G +G GK+ L + + Sbjct: 128 NPAYQFENFVEGKSNQLGKAAALQVAEN-PGGAYNPLFLYGGTGLGKTHLLHAVGNAIIK 186 Query: 88 ----------SRSTRFSNIAKSLDSILID-------TRKPVLLEDID---LLDFNDTQLF 127 ++ K+L + I+ + + ++DI D + + F Sbjct: 187 NNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQFFANKDRSQEEFF 246 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + ++++ Sbjct: 247 HTFNALLEGNHQVILTSDKYPKEIDGVEDRLKSRFGWGLTVAIEPPELETRVAILMRKAQ 306 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 307 ESGVNLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 361 >gi|117918468|ref|YP_867660.1| chromosomal replication initiation protein [Shewanella sp. ANA-3] gi|166215332|sp|A0KR35|DNAA_SHESA RecName: Full=Chromosomal replication initiator protein DnaA gi|117610800|gb|ABK46254.1| chromosomal replication initiator protein DnaA [Shewanella sp. ANA-3] Length = 460 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 37/235 (15%), Positives = 91/235 (38%), Gaps = 28/235 (11%) Query: 35 CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD---- 86 D+ + + A+++ ++ P + L G +G GK+ L + + Sbjct: 126 NPTYQFDNFVEGKSNQLGKAAALQVAEN-PGGAYNPLFLYGGTGLGKTHLLHAVGNGIIK 184 Query: 87 ---------KSRSTRFSNIAKSLDSILID-------TRKPVLLEDID---LLDFNDTQLF 127 ++ K+L + I+ + + ++DI D + + F Sbjct: 185 NNPDAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQFFANKDRSQEEFF 244 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + ++++ Sbjct: 245 HTFNALLEGNHQIILTSDRYPKEIDGVEDRLKSRFGWGLTVAIEPPELETRVAILMRKAQ 304 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 305 ESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 359 >gi|91228348|ref|ZP_01262276.1| chromosomal replication initiation protein [Vibrio alginolyticus 12G01] gi|262392783|ref|YP_003284637.1| chromosomal replication initiator protein dnaA [Vibrio sp. Ex25] gi|269965278|ref|ZP_06179399.1| chromosomal replication initiation protein [Vibrio alginolyticus 40B] gi|91188108|gb|EAS74412.1| chromosomal replication initiation protein [Vibrio alginolyticus 12G01] gi|262336377|gb|ACY50172.1| chromosomal replication initiator protein dnaA [Vibrio sp. Ex25] gi|269830079|gb|EEZ84307.1| chromosomal replication initiation protein [Vibrio alginolyticus 40B] Length = 468 Score = 125 bits (315), Expect = 6e-27, Method: Composition-based stats. Identities = 41/234 (17%), Positives = 90/234 (38%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK---- 87 D+ + + + A R + P + L G +G GK+ L + + Sbjct: 134 NPKHKFDNFVEGKSNQLGLAAARQVSDNPGAAYNPLFLYGGTGLGKTHLLHAVGNAIVDN 193 Query: 88 ---------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLFH 128 ++ K+L + I+ + +L++DI + + FH Sbjct: 194 NPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFH 253 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++ + + +++T+ +P L SR V I P+ + +++K D Sbjct: 254 TFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAED 313 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 QI + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 314 HQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 367 >gi|293393721|ref|ZP_06638029.1| DNA-directed DNA replication initiator protein [Serratia odorifera DSM 4582] gi|291423765|gb|EFE96986.1| DNA-directed DNA replication initiator protein [Serratia odorifera DSM 4582] Length = 440 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 44/256 (17%), Positives = 99/256 (38%), Gaps = 27/256 (10%) Query: 13 PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VIL 69 P + D + E L + + D+ + + + A P + L Sbjct: 85 PSRPSWDNAAPQPE-LSYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFL 143 Query: 70 VGPSGSGKSCLAN-----IWSDKSRS--------TRFSNIAKSLDSILID-------TRK 109 G +G GK+ L + I + K+ + ++ K+L + I+ + Sbjct: 144 YGGTGLGKTHLLHAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVD 203 Query: 110 PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 +L++DI + + FH N++ + + +++T+ +P L SR Sbjct: 204 ALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGL 263 Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 V I P+ + +++K + I + ++A +I +R+ ++ E ++++ A Sbjct: 264 TVAIEPPELETRVAILMKKADENNIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFT 323 Query: 227 GMGITRSLAAEVLKET 242 G IT E L++ Sbjct: 324 GRAITIDFVREALRDL 339 >gi|127510936|ref|YP_001092133.1| chromosomal replication initiation protein [Shewanella loihica PV-4] gi|166215330|sp|A3Q8S6|DNAA_SHELP RecName: Full=Chromosomal replication initiator protein DnaA gi|126636231|gb|ABO21874.1| chromosomal replication initiator protein DnaA [Shewanella loihica PV-4] Length = 459 Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats. Identities = 36/235 (15%), Positives = 90/235 (38%), Gaps = 28/235 (11%) Query: 35 CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN-----IWS 85 D+ + + A+++ ++ P + L G +G GK+ L + I Sbjct: 125 NPTYQFDNFVEGKSNQLGKAAALQVSEN-PGGAYNPLFLYGGTGLGKTHLLHAVGNGIIK 183 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLF 127 + + ++ ++ + +E+ +D L +D + F Sbjct: 184 NNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQFFANKDRSQEEFF 243 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + ++++ Sbjct: 244 HTFNALLEGNHQVILTSDRYPKEIDGVEDRLKSRFGWGLTVAIEPPELETRVAILMRKAQ 303 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 304 ESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 358 >gi|167470924|ref|ZP_02335628.1| chromosomal replication initiator protein DnaA [Yersinia pestis FV-1] Length = 355 Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats. Identities = 43/248 (17%), Positives = 96/248 (38%), Gaps = 28/248 (11%) Query: 23 NKEEQ--LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGK 77 N Q L + + D+ + + + A P + L G +G GK Sbjct: 7 NSPAQPELSYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGK 66 Query: 78 SCLAN-----IWSDKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDID 117 + L + I + K+ + ++ K+L + I+ + +L++DI Sbjct: 67 THLLHAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQ 126 Query: 118 LLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 + + FH N++ + + +++T+ +P L SR V I P+ Sbjct: 127 FFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPE 186 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234 + +++K + I + ++A +I +R+ ++ E ++++ A G IT Sbjct: 187 LETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDF 246 Query: 235 AAEVLKET 242 E L++ Sbjct: 247 VREALRDL 254 >gi|268315579|ref|YP_003289298.1| chromosomal replication initiator protein DnaA [Rhodothermus marinus DSM 4252] gi|262333113|gb|ACY46910.1| chromosomal replication initiator protein DnaA [Rhodothermus marinus DSM 4252] Length = 503 Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 80/235 (34%), Gaps = 27/235 (11%) Query: 35 CLGISRDDLLVHSAIE----QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS 90 + + + A+ + + ++ G G GK+ L + +R Sbjct: 165 DPKYTFERFIEGDCNRLARSAALAIAQQPGATSFNPFLVYGGVGLGKTHLIQAIGNYARQ 224 Query: 91 TRFSNIAKSLDS--------------------ILIDTRKPVLLEDIDLLDFND---TQLF 127 + + + S + ++++DI + + F Sbjct: 225 HHTAETIRYVSSEQFTNEFVQAIQHNRINEFSLFYRHIDLLIVDDIQFFGGKEKTQEEFF 284 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 HI N++HQ ++++A P L SR + + + PD + ++ + Sbjct: 285 HIFNALHQTGKQIVLSADRPPKDIPGIEERLLSRFQWGLMADVQPPDLETRIAILRRKAE 344 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 D I + + +I ++ + E + ++ A + I +LA E L++ Sbjct: 345 DEGIELGDDVIEFIAHHVKSNFRELEGALLRLVAHAAYQRRDIDLALAREALRDL 399 >gi|169795049|ref|YP_001712842.1| putative chromosomal replication initiator, DnaA-type [Acinetobacter baumannii AYE] gi|184159167|ref|YP_001847506.1| DNA replication initiation ATPase [Acinetobacter baumannii ACICU] gi|213158289|ref|YP_002320340.1| DnaA family protein [Acinetobacter baumannii AB0057] gi|215482598|ref|YP_002324790.1| DnaA regulatory inactivator Hda [Acinetobacter baumannii AB307-0294] gi|260556532|ref|ZP_05828750.1| DnaA regulatory inactivator Hda [Acinetobacter baumannii ATCC 19606] gi|301347427|ref|ZP_07228168.1| DnaA regulatory inactivator Hda [Acinetobacter baumannii AB056] gi|301513662|ref|ZP_07238899.1| DnaA regulatory inactivator Hda [Acinetobacter baumannii AB058] gi|301596500|ref|ZP_07241508.1| DnaA regulatory inactivator Hda [Acinetobacter baumannii AB059] gi|332851104|ref|ZP_08433213.1| DnaA regulatory inactivator Hda [Acinetobacter baumannii 6013150] gi|332869623|ref|ZP_08438834.1| DnaA regulatory inactivator Hda [Acinetobacter baumannii 6013113] gi|332875994|ref|ZP_08443780.1| DnaA regulatory inactivator Hda [Acinetobacter baumannii 6014059] gi|169147976|emb|CAM85839.1| putative chromosomal replication initiator, DnaA-type [Acinetobacter baumannii AYE] gi|183210761|gb|ACC58159.1| ATPase involved in DNA replication initiation [Acinetobacter baumannii ACICU] gi|193078085|gb|ABO13020.2| putative chromosomal replication initiator DnaA-type [Acinetobacter baumannii ATCC 17978] gi|213057449|gb|ACJ42351.1| DnaA family protein [Acinetobacter baumannii AB0057] gi|213987719|gb|ACJ58018.1| DnaA regulatory inactivator Hda [Acinetobacter baumannii AB307-0294] gi|260409791|gb|EEX03091.1| DnaA regulatory inactivator Hda [Acinetobacter baumannii ATCC 19606] gi|322509081|gb|ADX04535.1| Putative chromosomal replication initiator, DnaA-type [Acinetobacter baumannii 1656-2] gi|323519111|gb|ADX93492.1| DNA replication initiation ATPase [Acinetobacter baumannii TCDC-AB0715] gi|332730268|gb|EGJ61593.1| DnaA regulatory inactivator Hda [Acinetobacter baumannii 6013150] gi|332732670|gb|EGJ63902.1| DnaA regulatory inactivator Hda [Acinetobacter baumannii 6013113] gi|332735860|gb|EGJ66901.1| DnaA regulatory inactivator Hda [Acinetobacter baumannii 6014059] Length = 232 Score = 124 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 85/228 (37%), Gaps = 21/228 (9%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 QL L D V + + + G +G+GKS L + Sbjct: 2 RQLQLDIEPQLDARISDF-SGPGWGHVVDAVRQLHAGLVNRFYIYGGAGTGKSHLLSAIC 60 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPV-LLEDIDLLDFNDT-----------QLFHIINSI 133 D S I SL +L + + LE DL+ +D +FH++N Sbjct: 61 DSYLEVGKSAIKVSLLELLDAPIEAITCLEHYDLVALDDIESISGVPHWQKAVFHLMN-- 118 Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF---LEKVIVKMFADRQ 190 ++ L+ ++R P+ + LPDL SRL A VK+ P ++ + A R Sbjct: 119 -NHEGQLVFSSRVAPIELKLELPDLQSRLTQAVSVKV--PSGSLYADRYALVTSVMARRG 175 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238 I D+++ Y++ + V +++ L ++ + ++ Sbjct: 176 IHFDQQIVDYLLLHGPHQASILLQTVAQLEKLLKGEKTKLSNATLRQI 223 >gi|37524033|ref|NP_927377.1| chromosomal replication initiation protein [Photorhabdus luminescens subsp. laumondii TTO1] gi|61212694|sp|Q7NAD3|DNAA_PHOLL RecName: Full=Chromosomal replication initiator protein DnaA gi|36783456|emb|CAE12296.1| Chromosomal replication initiator protein DnaA [Photorhabdus luminescens subsp. laumondii TTO1] Length = 462 Score = 124 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 93/235 (39%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + D+ + + + A P + L G +G GK+ L + I + Sbjct: 127 VNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNSIMA 186 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K+ + ++ K+L + I+ + +L++DI + + F Sbjct: 187 RKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 246 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 247 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 306 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + +I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 307 ENEIQLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 361 >gi|269925124|ref|YP_003321747.1| chromosomal replication initiator protein DnaA [Thermobaculum terrenum ATCC BAA-798] gi|269788784|gb|ACZ40925.1| chromosomal replication initiator protein DnaA [Thermobaculum terrenum ATCC BAA-798] Length = 456 Score = 124 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 93/236 (39%), Gaps = 26/236 (11%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSW---PSWPSRVVILVGPSGSGKSCLANIW----- 84 P + ++ +V S+ A + P+ + L G G GK+ L + Sbjct: 118 PLNPRYTFENFIVGSSNRMAHAACMAVAEHPAEAYNPLFLYGGVGLGKTHLLHAIGNHAL 177 Query: 85 ------------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQL 126 S++ + + I + + + L++DI + + + Sbjct: 178 KLKPYLRVLYVSSEQFTNDLINAIREHRTEEFRARYRSIDILLIDDIQFIAGKESTQEEF 237 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH N +H + ++MT+ P + L SR + + +++LPD + ++ Sbjct: 238 FHTFNHLHGANKQIVMTSDRPPKAIATLQDRLRSRFEGGLMTEVNLPDLETRIAILRIKA 297 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ + + + I ++++ ++ E ++ + LA G IT + AAE L +T Sbjct: 298 ENKGVDLPDDVLELIARKVQSNIRELEGALNSIVALARLTGEPITLATAAEALNDT 353 >gi|114561189|ref|YP_748702.1| chromosomal replication initiation protein [Shewanella frigidimarina NCIMB 400] gi|122301225|sp|Q08A51|DNAA_SHEFN RecName: Full=Chromosomal replication initiator protein DnaA gi|114332482|gb|ABI69864.1| chromosomal replication initiator protein DnaA [Shewanella frigidimarina NCIMB 400] Length = 461 Score = 124 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 36/235 (15%), Positives = 90/235 (38%), Gaps = 28/235 (11%) Query: 35 CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN-----IWS 85 D+ + + A+++ ++ P + L G +G GK+ L + I Sbjct: 127 NPTYQFDNFVEGKSNQLGKAAALQVSEN-PGGAYNPLFLYGGTGLGKTHLLHAVGNGIIK 185 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLF 127 + + ++ ++ + +E+ +D L +D + F Sbjct: 186 NNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQFFANKDRSQEEFF 245 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + ++++ Sbjct: 246 HTFNALLEGNHQIILTSDRYPKEIDGVEDRLKSRFGWGLTVAIEPPELETRVAILMRKAQ 305 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 306 ESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 360 >gi|317131009|ref|YP_004090323.1| chromosomal replication initiator protein DnaA [Ethanoligenens harbinense YUAN-3] gi|315468988|gb|ADU25592.1| chromosomal replication initiator protein DnaA [Ethanoligenens harbinense YUAN-3] Length = 447 Score = 124 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 48/272 (17%), Positives = 100/272 (36%), Gaps = 38/272 (13%) Query: 2 NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRL---IDS 58 N + Y F V P++ E+ + D +V S+ + A + S Sbjct: 86 NGYRSQYDFVV-----TQNPEDIEQTYA---SADYEYTFDTFIVGSSNKFAHAASMAVAS 137 Query: 59 WPSWPSRVVILVGPSGSGKSCLANIWSDK-----SRSTRFSNIAKSLDSILIDT------ 107 P+ + + G SG GK+ L + + S + + L+++ Sbjct: 138 TPAMAYNPLFIYGGSGLGKTHLLHAIRHEILKNNPNSKILYIKGEDFTNELVESIRQNSQ 197 Query: 108 ---------RKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 +L++DI + + + FH NS+++ +++T+ P Sbjct: 198 IQFRNKYRQTDVLLVDDIQFVAGKESTQEEFFHTFNSLYESKKQIVLTSDRPPKEIQTLE 257 Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215 L +R + + I PD + +I + I I ++ YI R++ ++ E Sbjct: 258 DRLRTRFEWGLLADIQPPDFETRLAIIRRKAELLGINIPDEVDEYIANRLKNNIRQLEGA 317 Query: 216 VDKMDNLALSRGMGITRSLA----AEVLKETQ 243 V K+ L G + ++A ++L + Q Sbjct: 318 VKKIKAYNLLTGDPPSIAIAQNAIRDILNDNQ 349 >gi|157959831|ref|YP_001499865.1| chromosomal replication initiation protein [Shewanella pealeana ATCC 700345] gi|189083279|sp|A8GYE3|DNAA_SHEPA RecName: Full=Chromosomal replication initiator protein DnaA gi|157844831|gb|ABV85330.1| chromosomal replication initiator protein DnaA [Shewanella pealeana ATCC 700345] Length = 461 Score = 124 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 40/267 (14%), Positives = 99/267 (37%), Gaps = 42/267 (15%) Query: 17 KNDQPKNKE-EQLFFSFPR-------------CLGISRDDLLVHSAI----EQAVRLIDS 58 + +P +E + F+ P D+ + + A+++ ++ Sbjct: 95 RTSRPVTREVTKPSFNTPHAEPMANANHRSNINPTYQFDNFVEGKSNQLGKAAALQVAEN 154 Query: 59 WPSWPSRVVILVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDTRKPVLL 113 P + L G +G GK+ L + I + + ++ ++ + + Sbjct: 155 -PGGAYNPLFLYGGTGLGKTHLLHAVGNGIIKNNPNAKVVYMHSERFVQDMVKALQNNAI 213 Query: 114 ED-------IDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 E+ +D L +D + FH N++ + + +++T+ +P Sbjct: 214 EEFKRYYRSVDALFIDDIQFFANKDRSQEEFFHTFNALLEGNHQIILTSDKYPKEIDGVE 273 Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215 L SR V I P+ + ++++ + I + ++A +I +R+ ++ E Sbjct: 274 DRLKSRFGWGLTVAIEPPELETRVAILMRKAQESGINLPDEVAFFIAKRLRSNVRELEGA 333 Query: 216 VDKMDNLALSRGMGITRSLAAEVLKET 242 ++++ A G IT E L++ Sbjct: 334 LNRVIANANFTGRPITIDFVREALRDL 360 >gi|163788605|ref|ZP_02183050.1| chromosomal replication initiator protein [Flavobacteriales bacterium ALC-1] gi|159875842|gb|EDP69901.1| chromosomal replication initiator protein [Flavobacteriales bacterium ALC-1] Length = 475 Score = 124 bits (313), Expect = 9e-27, Method: Composition-based stats. Identities = 41/259 (15%), Positives = 93/259 (35%), Gaps = 37/259 (14%) Query: 10 FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66 F +P + E QL S ++ L + A + + P Sbjct: 125 FVIPGIRNV----KIESQL------NPSYSFENFLEGDSNRLARNAGIAVANKPGGTSFN 174 Query: 67 -VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTR 108 +++ G G GK+ LA+ ++K ++ K+ + I Sbjct: 175 PLLIFGGVGLGKTHLAHAIGVDIKDKYPEKTVLYISAEKFTQQYIDSVKKNNRNDFIHFY 234 Query: 109 ---KPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 ++++D+ L FHI N +HQ +++T+ PV L SR Sbjct: 235 QIIDVLIIDDVQFLSGKTGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSRF 294 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 K ++ PD + ++ + + ++ Y+ + ++ ++ E + + Sbjct: 295 KWGLSAELQTPDFETRVSILKNKLYRDGVEMPDEIVEYVAKHIKTNVRELEGAIISLIAQ 354 Query: 223 ALSRGMGITRSLAAEVLKE 241 + IT +LA +++++ Sbjct: 355 SSFNKKEITINLAKDIVEK 373 >gi|320539854|ref|ZP_08039513.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Serratia symbiotica str. Tucson] gi|320030040|gb|EFW12060.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Serratia symbiotica str. Tucson] Length = 460 Score = 124 bits (313), Expect = 9e-27, Method: Composition-based stats. Identities = 44/256 (17%), Positives = 99/256 (38%), Gaps = 27/256 (10%) Query: 13 PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VIL 69 P + D + E L + + D+ + + + A P + L Sbjct: 105 PSRPSWDNAAPQPE-LSYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFL 163 Query: 70 VGPSGSGKSCLAN-----IWSDKSRS--------TRFSNIAKSLDSILID-------TRK 109 G +G GK+ L + I + K+ + ++ K+L + I+ + Sbjct: 164 YGGTGLGKTHLLHAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVD 223 Query: 110 PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 +L++DI + + FH N++ + + +++T+ +P L SR Sbjct: 224 ALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGL 283 Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 V I P+ + +++K + I + ++A +I +R+ ++ E ++++ A Sbjct: 284 TVAIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFT 343 Query: 227 GMGITRSLAAEVLKET 242 G IT E L++ Sbjct: 344 GRAITIDFVREALRDL 359 >gi|85057979|ref|YP_453681.1| chromosomal replication initiation protein [Sodalis glossinidius str. 'morsitans'] gi|123725464|sp|Q2NX49|DNAA_SODGM RecName: Full=Chromosomal replication initiator protein DnaA gi|84778499|dbj|BAE73276.1| chromosomal replication initiator protein DnaA [Sodalis glossinidius str. 'morsitans'] Length = 464 Score = 124 bits (313), Expect = 9e-27, Method: Composition-based stats. Identities = 45/265 (16%), Positives = 101/265 (38%), Gaps = 35/265 (13%) Query: 13 PDKQKNDQPK-------NKEEQ--LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP 63 P + +P+ N Q L + + D+ + + + A P Sbjct: 99 PSQAAVARPRPSRPSWDNAPVQPELSYRSNVNPKHNFDNFVEGKSNQLARAAARQVADNP 158 Query: 64 SRV---VILVGPSGSGKSCLAN-----IWSDKSRS--------TRFSNIAKSLDSILID- 106 + L G +G GK+ L + I + K+ + ++ K+L + I+ Sbjct: 159 GGAYNPLFLYGGTGLGKTHLLHAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEE 218 Query: 107 ------TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 + +L++DI + + FH N++ + + +++T+ +P Sbjct: 219 FKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDR 278 Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 L SR V I P+ + +++K + I + ++A +I +R+ ++ E ++ Sbjct: 279 LKSRFGWGLTVAIEPPELETRVAILMKKADENAIRLPGEVAFFIAKRLRSNVRELEGALN 338 Query: 218 KMDNLALSRGMGITRSLAAEVLKET 242 ++ A G IT E L++ Sbjct: 339 RVIANANFTGRAITIDFVREALRDL 363 >gi|258513367|ref|YP_003189589.1| chromosomal replication initiator protein DnaA [Desulfotomaculum acetoxidans DSM 771] gi|257777072|gb|ACV60966.1| chromosomal replication initiator protein DnaA [Desulfotomaculum acetoxidans DSM 771] Length = 446 Score = 124 bits (313), Expect = 9e-27, Method: Composition-based stats. Identities = 36/237 (15%), Positives = 90/237 (37%), Gaps = 26/237 (10%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWS-----D 86 + D +V + A + P++ + + G G GK+ L + + Sbjct: 113 KSKYTFDTFVVGDSNRFAHAACFAVAESPAKSYNPLFIYGGVGLGKTHLMHAIAHYILTQ 172 Query: 87 KSRSTRFSNIAKSLDSILIDT---------------RKPVLLEDIDLLDFND---TQLFH 128 + S ++ + LI++ +L++DI L + + FH Sbjct: 173 GTGSKVVYVTSEKFTNELINSFRDDQTIKFRNKYRSMNILLIDDIQFLAGKERTQEEFFH 232 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++++ + +++++ P L SR + + I PD + ++ K Sbjct: 233 TFNTLYEANKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDIQAPDYETRIAILRKKAQV 292 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 +++I ++ +I +++ ++ E + ++ A + LA +VLK+ Sbjct: 293 DKLYIPDEVINFIATKIKSNIRELEGCLIRIIAYASFTKKEMNVELAEQVLKDILNP 349 >gi|212712612|ref|ZP_03320740.1| hypothetical protein PROVALCAL_03707 [Providencia alcalifaciens DSM 30120] gi|212684828|gb|EEB44356.1| hypothetical protein PROVALCAL_03707 [Providencia alcalifaciens DSM 30120] Length = 491 Score = 124 bits (313), Expect = 9e-27, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + D+ + + + A P + L G +G GK+ L + I Sbjct: 156 VNPKHTFDNFVEGKSNQLARAAARQVAENPGGAYNPLFLYGGTGLGKTHLLHAVGNSIMQ 215 Query: 86 DKSRSTRF--------SNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K+ + ++ K+L + I+ + +L++DI + + F Sbjct: 216 HKANARVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 275 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 276 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 335 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + +I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 336 ENEIQLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 390 >gi|225016760|ref|ZP_03705952.1| hypothetical protein CLOSTMETH_00672 [Clostridium methylpentosum DSM 5476] gi|224950428|gb|EEG31637.1| hypothetical protein CLOSTMETH_00672 [Clostridium methylpentosum DSM 5476] Length = 454 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 88/230 (38%), Gaps = 26/230 (11%) Query: 38 ISRDDLLVHSAIEQAVRLIDSW---PSWPSRVVILVGPSGSGKSCLANIWSDK------- 87 + D +V S+ A + S + + GPSG GK+ L S + Sbjct: 121 YTFDTFIVGSSNTFAYAACKAVAQQQSGAYNPLFIYGPSGLGKTHLLMAISHEIKRQNPD 180 Query: 88 SRSTRFSNIAKSLDSILIDTRKP-------------VLLEDIDLLDF---NDTQLFHIIN 131 + + A + + I R+ +L++DI L + F+ N Sbjct: 181 TNILYINGEAFANELITAIGRQATNEFREKYRRVDILLMDDIQFLAGKTQTQEEFFYTFN 240 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 +HQ +++T+ P L +R + + IS PD + +I + I Sbjct: 241 DLHQVGKQIVLTSDRPPKDIKTLEERLRTRFEWGLLADISPPDFETRIAIIRRKAQLLDI 300 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + ++A +I R++ ++ E V K+ L G + S+A V+++ Sbjct: 301 EMPDEVAEFIANRLKNNIRQLEGAVKKIKAYKLLAGSPPSISMAQTVIRD 350 >gi|330995967|ref|ZP_08319861.1| replication initiator protein DnaA [Paraprevotella xylaniphila YIT 11841] gi|329573964|gb|EGG55542.1| replication initiator protein DnaA [Paraprevotella xylaniphila YIT 11841] Length = 468 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 39/263 (14%), Positives = 97/263 (36%), Gaps = 37/263 (14%) Query: 13 PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAV----RLIDSWPSWPSRVVI 68 P + P++ + QL S ++ + + + + + + Sbjct: 116 PSPLQAPMPQDLDPQL------NRNYSFENFIEGVSNKLPRSVGQAIAEHPKQSTFNPLF 169 Query: 69 LVGPSGSGKSCL---------------------ANIWSDK-SRSTRFSNIAKSLDSILID 106 + G SG GK+ L A+++ + + S R + + ++ Sbjct: 170 IYGASGVGKTHLVNAIGAKIKELHPTKRVLYVSAHLFQVQYTDSVRKNTVNDFIN--FYQ 227 Query: 107 TRKPVLLEDID---LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 T ++++D+ L FHI N +HQ L++T+ P + L +R K Sbjct: 228 TIDVLIIDDVQEFASLTKTQNTFFHIFNHLHQNGRQLILTSDRPPTALQGMEERLLTRFK 287 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + ++ P+ ++ + I +++ ++ + + S+ E +V+ + + Sbjct: 288 WGLLAELEKPNQQLRHDILENKIRQDGLKIPEEVIDFVSENVNDSVRELEGIVNSLMAYS 347 Query: 224 LSRGMGITRSLAAEVLKETQQCD 246 + I LA ++LK + + Sbjct: 348 VVWNRDIDLPLAEQILKRAVKVE 370 >gi|327398174|ref|YP_004339043.1| Chromosomal replication initiator protein dnaA [Hippea maritima DSM 10411] gi|327180803|gb|AEA32984.1| Chromosomal replication initiator protein dnaA [Hippea maritima DSM 10411] Length = 417 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 33/233 (14%), Positives = 84/233 (36%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK---- 87 ++ +V + + A + P+ + + G G GK+ L + + Sbjct: 82 NSKYGFENFVVGPSNQLAYAASVAVSENPAKAYNPLFIYGGVGLGKTHLLHAIGNSIKKN 141 Query: 88 -SRSTRFSNIAKSLDSILIDTR---------------KPVLLEDIDLLDF---NDTQLFH 128 + ++ + LI++ +L++DI + + + FH Sbjct: 142 NPNARVLYISSEEFTNELINSIQYKKMTQFRNKYRNLDCLLIDDIQFISKKERTEEEFFH 201 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++++ +++T+ P L SR +V I P+ + +I K Sbjct: 202 TFNALYESQKQIIITSDKPPNEIPDIENRLKSRFSWGLIVDIQPPELETRIAIIRKKAEL 261 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I +++ +I + ++ E + K+ +T +L +L++ Sbjct: 262 FNLEISQEIIEFIASSISSNVREIEGALIKISAYKSIMRKPVTLNLVKSILQD 314 >gi|91216500|ref|ZP_01253466.1| chromosomal replication initiation protein [Psychroflexus torquis ATCC 700755] gi|91185294|gb|EAS71671.1| chromosomal replication initiation protein [Psychroflexus torquis ATCC 700755] Length = 476 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 50/266 (18%), Positives = 99/266 (37%), Gaps = 32/266 (12%) Query: 9 SFFVPDKQKNDQPKNKE-----EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP 63 S P +QKN + +N L + D+ L ++ A + + P Sbjct: 109 SIDFPSRQKNPELRNPFVIPGIRNLKIDSQLNSNYTFDNFLEGTSNRLARSASLAVANKP 168 Query: 64 SRV----VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDS 102 +++ G G GK+ LA+ +DK ++K+ + Sbjct: 169 GGTSFNPLLIFGGVGLGKTHLAHAIGLQVKDKFPDKTVLYISADKFTQQHIDAVSKNNRN 228 Query: 103 ILIDTRKPV---LLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156 I + V +++DI L+ FHI N +HQ +++T+ PV Sbjct: 229 DFIHFYQIVDVLIVDDIQLISGKKGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIQQ 288 Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216 L SR K +++ PD + K+I + + + ++ Y+ R+ ++ E + Sbjct: 289 RLLSRFKWGLSAELAQPDFETRIKIIKNKLYNDGVEMADEILDYVASRITANIRELEGAI 348 Query: 217 DKMDNLALSRGMGITRSLAAEVLKET 242 + + IT LA +++K Sbjct: 349 ISLIAHSTFSKKEITIDLAEQIVKNY 374 >gi|261346742|ref|ZP_05974386.1| DNA biosynthesis protein [Providencia rustigianii DSM 4541] gi|282565142|gb|EFB70677.1| DNA biosynthesis protein [Providencia rustigianii DSM 4541] Length = 465 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + D+ + + + A P + L G +G GK+ L + I Sbjct: 130 VNPKHTFDNFVEGKSNQLARAAARQVAENPGGAYNPLFLYGGTGLGKTHLLHAVGNSIMQ 189 Query: 86 DKSRSTRF--------SNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K+ + ++ K+L + I+ + +L++DI + + F Sbjct: 190 HKANARVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 249 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 250 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 309 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + +I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 310 ENEIQLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 364 >gi|260771047|ref|ZP_05879975.1| chromosomal replication initiator protein dnaA [Vibrio furnissii CIP 102972] gi|260613936|gb|EEX39127.1| chromosomal replication initiator protein dnaA [Vibrio furnissii CIP 102972] gi|315178626|gb|ADT85540.1| chromosomal replication initiation protein [Vibrio furnissii NCTC 11218] Length = 468 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 40/234 (17%), Positives = 90/234 (38%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK---- 87 ++ + + + A R + P + L G +G GK+ L + + Sbjct: 134 NPKHKFNNFVEGKSNQLGLAAARQVSDNPGAAYNPLFLYGGTGLGKTHLLHAVGNAIVDN 193 Query: 88 ---------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLFH 128 ++ K+L + I+ + +L++DI + + FH Sbjct: 194 NPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFH 253 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++ + + +++T+ +P L SR V I P+ + +++K D Sbjct: 254 TFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAED 313 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 QI + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 314 HQIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 367 >gi|314934960|ref|ZP_07842319.1| DNA replication initiator protein, ATPase [Staphylococcus caprae C87] gi|313652890|gb|EFS16653.1| DNA replication initiator protein, ATPase [Staphylococcus caprae C87] Length = 451 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 92/233 (39%), Gaps = 28/233 (12%) Query: 40 RDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW-----SDKSRST 91 D ++ A + P+ + + G G GK+ L + S++ + Sbjct: 120 FDTFVIGPGNRFPHAASLAVAEAPAEAYNPLFIYGGVGLGKTHLMHAIGHHVLSNQPSAK 179 Query: 92 RFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINSI 133 ++ + I + + +L++DI + + + FH N + Sbjct: 180 VIYTSSEKFTNEFIKSIRDNETEAFREKYRNIDVLLIDDIQFIQNKEQTQEEFFHTFNEL 239 Query: 134 HQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 HQ + +++++ P L D L SR + +V I+ PD + ++ K + + Sbjct: 240 HQNNKQIVISSDRPPKEIA-KLEDRLRSRFEWGLIVDITPPDYETRMAILQKKIEEENLD 298 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 I + YI +++ ++ E + ++ + +G IT LAAE LK+ Q Sbjct: 299 IPPEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPITTELAAEALKDIIQA 351 >gi|223043484|ref|ZP_03613530.1| chromosomal replication initiator protein DnaA [Staphylococcus capitis SK14] gi|222443273|gb|EEE49372.1| chromosomal replication initiator protein DnaA [Staphylococcus capitis SK14] Length = 450 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 92/233 (39%), Gaps = 28/233 (12%) Query: 40 RDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW-----SDKSRST 91 D ++ A + P+ + + G G GK+ L + S++ + Sbjct: 120 FDTFVIGPGNRFPHAASLAVAEAPAEAYNPLFIYGGVGLGKTHLMHAIGHHVLSNQPSAK 179 Query: 92 RFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINSI 133 ++ + I + + +L++DI + + + FH N + Sbjct: 180 VIYTSSEKFTNEFIKSIRDNETEAFREKYRNIDVLLIDDIQFIQNKEQTQEEFFHTFNEL 239 Query: 134 HQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 HQ + +++++ P L D L SR + +V I+ PD + ++ K + + Sbjct: 240 HQNNKQIVISSDRPPKEIA-KLEDRLRSRFEWGLIVDITPPDYETRMAILQKKIEEENLD 298 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 I + YI +++ ++ E + ++ + +G IT LAAE LK+ Q Sbjct: 299 IPPEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPITTELAAEALKDIIQA 351 >gi|28896785|ref|NP_796390.1| chromosomal replication initiation protein [Vibrio parahaemolyticus RIMD 2210633] gi|260876543|ref|ZP_05888898.1| chromosomal replication initiator protein DnaA [Vibrio parahaemolyticus AN-5034] gi|31340039|sp|Q87TQ7|DNAA_VIBPA RecName: Full=Chromosomal replication initiator protein DnaA gi|28804993|dbj|BAC58274.1| chromosomal DNA replication initiator DnaA [Vibrio parahaemolyticus RIMD 2210633] gi|308090368|gb|EFO40063.1| chromosomal replication initiator protein DnaA [Vibrio parahaemolyticus AN-5034] gi|328471238|gb|EGF42140.1| chromosomal replication initiation protein [Vibrio parahaemolyticus 10329] Length = 468 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 41/234 (17%), Positives = 90/234 (38%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK---- 87 D+ + + + A R + P + L G +G GK+ L + + Sbjct: 134 NPKHKFDNFVEGKSNQLGLAAARQVSDNPGAAYNPLFLYGGTGLGKTHLLHAVGNAIVDN 193 Query: 88 ---------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLFH 128 ++ K+L + I+ + +L++DI + + FH Sbjct: 194 NPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFH 253 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++ + + +++T+ +P L SR V I P+ + +++K D Sbjct: 254 TFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAED 313 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 QI + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 314 HQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 367 >gi|71278268|ref|YP_266783.1| chromosomal replication initiator protein DnaA [Colwellia psychrerythraea 34H] gi|123761122|sp|Q48AS7|DNAA_COLP3 RecName: Full=Chromosomal replication initiator protein DnaA gi|71144008|gb|AAZ24481.1| chromosomal replication initiator protein DnaA [Colwellia psychrerythraea 34H] Length = 461 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 89/235 (37%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANI------- 83 L + ++ + + + A P + + G +G GK+ L + Sbjct: 126 VRLNYTFENFVEGKSNQLARAAASQVADNPGTAYNPLFIYGGTGLGKTHLLHAVGNGILL 185 Query: 84 ------WSDKSRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 + ++ ++L + ++ + +L++DI + + F Sbjct: 186 NKPNAKIAYMHSERFVQDMVRALQNNAMEKFKQYYRSVDALLIDDIQFFAGKERTQEEFF 245 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR + I P+ + ++ + Sbjct: 246 HTFNALLEGNQQVILTSDRYPKEINGVDDRLKSRFGWGLTLAIEPPELETRVAILKRKAQ 305 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + QI + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 306 ESQINLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 360 >gi|212632925|ref|YP_002309450.1| chromosomal replication initiation protein [Shewanella piezotolerans WP3] gi|226735846|sp|B8CH71|DNAA_SHEPW RecName: Full=Chromosomal replication initiator protein DnaA gi|212554409|gb|ACJ26863.1| Chromosomal replication initiator protein DnaA [Shewanella piezotolerans WP3] Length = 461 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 37/235 (15%), Positives = 91/235 (38%), Gaps = 28/235 (11%) Query: 35 CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN-----IWS 85 D+ + + A+++ ++ P + L G +G GK+ L + I Sbjct: 127 NPTYQFDNFVEGKSNQLGKAAALQVSEN-PGGAYNPLFLYGGTGLGKTHLLHAVGNGIIK 185 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLF 127 +K + ++ ++ + +E+ +D L +D + F Sbjct: 186 NKPDAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQFFANKDRSQEEFF 245 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + ++++ Sbjct: 246 HTFNALLEGNHQIILTSDKYPKEIDGVEDRLKSRFGWGLTVAIEPPELETRVAILMRKAQ 305 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 306 ESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 360 >gi|1352278|sp|P29440|DNAA_SERMA RecName: Full=Chromosomal replication initiator protein DnaA gi|407186|gb|AAA02924.1|AAA02924 DnaA [Serratia marcescens] Length = 464 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 43/250 (17%), Positives = 97/250 (38%), Gaps = 27/250 (10%) Query: 19 DQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGS 75 D + E L + + D+ + + + A P + L G +G Sbjct: 115 DNAAAQPE-LSYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGL 173 Query: 76 GKSCLAN-----IWSDKSRS--------TRFSNIAKSLDSILID-------TRKPVLLED 115 GK+ L + I + K+ + ++ K+L + I+ + +L++D Sbjct: 174 GKTHLLHAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDD 233 Query: 116 IDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 I + + FH N++ + + +++T+ +P L SR V I Sbjct: 234 IQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEP 293 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232 P+ + +++K + I + ++A +I +R+ ++ E ++++ A G IT Sbjct: 294 PELETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITI 353 Query: 233 SLAAEVLKET 242 E L++ Sbjct: 354 DFVREALRDL 363 >gi|238797845|ref|ZP_04641337.1| Chromosomal replication initiator protein dnaA [Yersinia mollaretii ATCC 43969] gi|238718261|gb|EEQ10085.1| Chromosomal replication initiator protein dnaA [Yersinia mollaretii ATCC 43969] Length = 463 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + D+ + + + A P + L G +G GK+ L + I + Sbjct: 128 VNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 187 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K+ + ++ K+L + I+ + +L++DI + + F Sbjct: 188 RKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 247 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 248 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 307 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 308 ENNIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 362 >gi|238750289|ref|ZP_04611791.1| Chromosomal replication initiator protein dnaA [Yersinia rohdei ATCC 43380] gi|238711522|gb|EEQ03738.1| Chromosomal replication initiator protein dnaA [Yersinia rohdei ATCC 43380] Length = 462 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 43/250 (17%), Positives = 96/250 (38%), Gaps = 28/250 (11%) Query: 19 DQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGS 75 P E L + + D+ + + + A P + L G +G Sbjct: 114 SSPAQPE--LSYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGL 171 Query: 76 GKSCLAN-----IWSDKSRS--------TRFSNIAKSLDSILID-------TRKPVLLED 115 GK+ L + I + K+ + ++ K+L + I+ + +L++D Sbjct: 172 GKTHLLHAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDD 231 Query: 116 IDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 I + + FH N++ + + +++T+ +P L SR V I Sbjct: 232 IQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEP 291 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232 P+ + +++K + I + ++A +I +R+ ++ E ++++ A G IT Sbjct: 292 PELETRVAILMKKADENNIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITI 351 Query: 233 SLAAEVLKET 242 E L++ Sbjct: 352 DFVREALRDL 361 >gi|332877991|ref|ZP_08445721.1| replication initiator protein DnaA [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683953|gb|EGJ56820.1| replication initiator protein DnaA [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 468 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 39/263 (14%), Positives = 97/263 (36%), Gaps = 37/263 (14%) Query: 13 PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAV----RLIDSWPSWPSRVVI 68 P + P++ + QL S ++ + + + + + + Sbjct: 116 PSPLQAPMPQDLDPQL------NRNYSFENFIEGVSNKLPRSVGQAIAEHPKQSTFNPLF 169 Query: 69 LVGPSGSGKSCL---------------------ANIWSDK-SRSTRFSNIAKSLDSILID 106 + G SG GK+ L A+++ + + S R + + ++ Sbjct: 170 IYGASGVGKTHLVNAIGAKIKELHPTKRVLYVSAHLFQVQYTDSVRKNTVNDFIN--FYQ 227 Query: 107 TRKPVLLEDID---LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 T ++++D+ L FHI N +HQ L++T+ P + L +R K Sbjct: 228 TIDVLIIDDVQEFASLTKTQNTFFHIFNHLHQNGRQLILTSDRPPTALQGMEERLLTRFK 287 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + ++ P+ ++ + I +++ ++ + + S+ E +V+ + + Sbjct: 288 WGLLAELEKPNQQLRHDILENKIRQDGLKIPEEVIDFVSENVNDSVRELEGIVNSLMAYS 347 Query: 224 LSRGMGITRSLAAEVLKETQQCD 246 + I LA ++LK + + Sbjct: 348 VVWNRDIDLPLAEQILKRAVKQE 370 >gi|308047723|ref|YP_003911289.1| chromosomal replication initiator protein DnaA [Ferrimonas balearica DSM 9799] gi|307629913|gb|ADN74215.1| chromosomal replication initiator protein DnaA [Ferrimonas balearica DSM 9799] Length = 468 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 42/257 (16%), Positives = 92/257 (35%), Gaps = 27/257 (10%) Query: 12 VPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VI 68 VP +P Q D+ + + + A P + Sbjct: 112 VPASPVRTEPPASSNQ-SVRSNINPNYQFDNFVEGKSNQLARAAASQVADNPGGAYNPLF 170 Query: 69 LVGPSGSGKSCLANIWSD-------------KSRSTRFSNIAKSLDSILID-------TR 108 L G +G GK+ L + + ++ K+L + I + Sbjct: 171 LYGGTGLGKTHLLHAVGNGIMKRKPNAKVVYMHSERFVQDMVKALQNNAIAEFKRYYRSV 230 Query: 109 KPVLLEDID---LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 +L++DI D + + FH N++ + + +++T+ +P L SR Sbjct: 231 DALLIDDIQFFANKDRSQEEFFHTFNALLEGNHQIILTSDRYPKEIDGVEDRLKSRFGWG 290 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 V I P+ + ++++ + I + ++A +I +R+ ++ E ++++ A Sbjct: 291 LTVAIEPPELETRVAILMRKAEESNIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANF 350 Query: 226 RGMGITRSLAAEVLKET 242 G IT E L++ Sbjct: 351 TGRPITIDFVREALRDL 367 >gi|238754004|ref|ZP_04615363.1| Chromosomal replication initiator protein dnaA [Yersinia ruckeri ATCC 29473] gi|238707756|gb|EEQ00115.1| Chromosomal replication initiator protein dnaA [Yersinia ruckeri ATCC 29473] Length = 463 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + D+ + + + A P + L G +G GK+ L + I + Sbjct: 128 VNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 187 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K+ + ++ K+L + I+ + +L++DI + + F Sbjct: 188 RKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 247 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 248 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 307 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 308 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 362 >gi|295115474|emb|CBL36321.1| chromosomal replication initiator protein DnaA [butyrate-producing bacterium SM4/1] Length = 456 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 45/263 (17%), Positives = 94/263 (35%), Gaps = 29/263 (11%) Query: 12 VPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVI 68 V + Q + ++Q+ + + D +V + A + P + Sbjct: 94 VSENQLLSHSTDVDQQVIQNANLNPRYTFDTFVVGANNNLAHAASLAVAESPGEIYNPLF 153 Query: 69 LVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDT---------------- 107 + G G GK+ L + I + ++ ++ + LID Sbjct: 154 IYGGVGLGKTHLMHSIGHFILQNNPKAKILYVTSEKFTNELIDAIRNKNNISTTEFREKY 213 Query: 108 --RKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 +L++DI + + + FH N++++ +++++ P L SR Sbjct: 214 RNNDVLLIDDIQFIIGKESTQEEFFHTFNALYEAKKQIIISSDKPPKEIETLEERLRSRF 273 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 + V I PD + ++ K ID ++ YI ++ ++ E + K+ L Sbjct: 274 EWGLTVDIQSPDYETRMAILRKKEELEGYNIDNEVIKYIATHVKSNIRELEGALTKIVAL 333 Query: 223 ALSRGMGITRSLAAEVLKETQQC 245 + IT LA E LK+ Sbjct: 334 SKLNKREITTELAEEALKDLISP 356 >gi|283797185|ref|ZP_06346338.1| DNA replication initiator protein, ATPase [Clostridium sp. M62/1] gi|291075143|gb|EFE12507.1| DNA replication initiator protein, ATPase [Clostridium sp. M62/1] gi|295090278|emb|CBK76385.1| chromosomal replication initiator protein DnaA [Clostridium cf. saccharolyticum K10] Length = 456 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 45/263 (17%), Positives = 94/263 (35%), Gaps = 29/263 (11%) Query: 12 VPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVI 68 V + Q + ++Q+ + + D +V + A + P + Sbjct: 94 VSENQLLSHSTDVDQQVIQNANLNPRYTFDTFVVGANNNLAHAASLAVAESPGEIYNPLF 153 Query: 69 LVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDT---------------- 107 + G G GK+ L + I + ++ ++ + LID Sbjct: 154 IYGGVGLGKTHLMHSIGHFILQNNPKAKILYVTSEKFTNELIDAIRNKNNISTTEFREKY 213 Query: 108 --RKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 +L++DI + + + FH N++++ +++++ P L SR Sbjct: 214 RNNDVLLIDDIQFIIGKESTQEEFFHTFNALYEAKKQIIISSDKPPKEIETLEERLRSRF 273 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 + V I PD + ++ K ID ++ YI ++ ++ E + K+ L Sbjct: 274 EWGLTVDIQSPDYETRMAILRKKEELEGYNIDNEVIKYIATHVKSNIRELEGALTKIVAL 333 Query: 223 ALSRGMGITRSLAAEVLKETQQC 245 + IT LA E LK+ Sbjct: 334 SKLNKREITTELAEEALKDLISP 356 >gi|308095436|ref|ZP_05905896.2| chromosomal replication initiator protein DnaA [Vibrio parahaemolyticus Peru-466] gi|308087878|gb|EFO37573.1| chromosomal replication initiator protein DnaA [Vibrio parahaemolyticus Peru-466] Length = 443 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 41/234 (17%), Positives = 90/234 (38%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK---- 87 D+ + + + A R + P + L G +G GK+ L + + Sbjct: 125 NPKHKFDNFVEGKSNQLGLAAARQVSDNPGAAYNPLFLYGGTGLGKTHLLHAVGNAIVDN 184 Query: 88 ---------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLFH 128 ++ K+L + I+ + +L++DI + + FH Sbjct: 185 NPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFH 244 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++ + + +++T+ +P L SR V I P+ + +++K D Sbjct: 245 TFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAED 304 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 QI + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 305 HQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 358 >gi|170022263|ref|YP_001718768.1| chromosomal replication initiation protein [Yersinia pseudotuberculosis YPIII] gi|186893345|ref|YP_001870457.1| chromosomal replication initiation protein [Yersinia pseudotuberculosis PB1/+] gi|169748797|gb|ACA66315.1| chromosomal replication initiator protein DnaA [Yersinia pseudotuberculosis YPIII] gi|186696371|gb|ACC87000.1| chromosomal replication initiator protein DnaA [Yersinia pseudotuberculosis PB1/+] Length = 450 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 43/248 (17%), Positives = 96/248 (38%), Gaps = 28/248 (11%) Query: 23 NKEEQ--LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGK 77 N Q L + + D+ + + + A P + L G +G GK Sbjct: 102 NSPAQPELSYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGK 161 Query: 78 SCLAN-----IWSDKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDID 117 + L + I + K+ + ++ K+L + I+ + +L++DI Sbjct: 162 THLLHAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQ 221 Query: 118 LLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 + + FH N++ + + +++T+ +P L SR V I P+ Sbjct: 222 FFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPE 281 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234 + +++K + I + ++A +I +R+ ++ E ++++ A G IT Sbjct: 282 LETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDF 341 Query: 235 AAEVLKET 242 E L++ Sbjct: 342 VREALRDL 349 >gi|167621942|ref|YP_001672236.1| chromosomal replication initiation protein [Shewanella halifaxensis HAW-EB4] gi|189083278|sp|B0TLA4|DNAA_SHEHH RecName: Full=Chromosomal replication initiator protein DnaA gi|167351964|gb|ABZ74577.1| chromosomal replication initiator protein DnaA [Shewanella halifaxensis HAW-EB4] Length = 461 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 36/235 (15%), Positives = 90/235 (38%), Gaps = 28/235 (11%) Query: 35 CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN-----IWS 85 D+ + + A+++ ++ P + L G +G GK+ L + I Sbjct: 127 NPTYQFDNFVEGKSNQLGKAAAMQVAEN-PGGAYNPLFLYGGTGLGKTHLLHAVGNGIIK 185 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLF 127 + + ++ ++ + +E+ +D L +D + F Sbjct: 186 NNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQFFANKDRSQEEFF 245 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + ++++ Sbjct: 246 HTFNALLEGNHQIILTSDKYPKEIDGVEDRLKSRFGWGLTVAIEPPELETRVAILMRKAQ 305 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 306 ESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 360 >gi|332798024|ref|YP_004459523.1| chromosomal replication initiator protein dnaA [Tepidanaerobacter sp. Re1] gi|332695759|gb|AEE90216.1| Chromosomal replication initiator protein dnaA [Tepidanaerobacter sp. Re1] Length = 453 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 43/270 (15%), Positives = 99/270 (36%), Gaps = 29/270 (10%) Query: 1 MNLMKEDY-SFFVPDKQKNDQPKNKEEQLFFSFP--RCLGISRDDLLVHSAIEQAVRLID 57 +N+ E + S +PD + ++ + L + D +V ++ A Sbjct: 80 INVNPEGFGSEVLPDDSISLNEVSETKTLAEDTTPSLNQKYTFDTFVVGNSNRFAHAASQ 139 Query: 58 SWPSWPSRV---VILVGPSGSGKSCLANIW------SDKSRSTRFSNIAKSLDSILID-- 106 + P++ + G G GK+ L + D + + + K + ++ Sbjct: 140 AVAQAPAKAYNPFFIYGGVGLGKTHLMHAIGHYILQQDPTCKVVYLSSEKFTNELINSIR 199 Query: 107 ------------TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSW 151 T +L++DI + + + FH N++H + L++++ P Sbjct: 200 DDKNVEFRNKYRTIDVLLIDDIQFIAGKERTQEEFFHTFNALHDANKQLVISSDRPPKEI 259 Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211 L SR + + I PD + ++ K + + + +I ++E ++ Sbjct: 260 PTLEERLRSRFEWGLITDIQPPDFETRIAILQKKAMMENLIVPNDVINFIATKIETNIRE 319 Query: 212 AEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 E + ++ + I LA +VLK+ Sbjct: 320 LEGALIRVVAYSSLTDCPIDIGLAEQVLKD 349 >gi|269137359|ref|YP_003294059.1| DNA replication initiation ATPase [Edwardsiella tarda EIB202] gi|267983019|gb|ACY82848.1| ATPase involved in DNA replication initiation [Edwardsiella tarda EIB202] gi|304557460|gb|ADM40124.1| Chromosomal replication initiator protein dnaA [Edwardsiella tarda FL6-60] Length = 440 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 43/263 (16%), Positives = 98/263 (37%), Gaps = 33/263 (12%) Query: 13 PDKQKNDQPKNK-------EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSR 65 P + P + +L + + D+ + + + A P Sbjct: 77 PAAVRTSSPARPSWERVTAQPELSYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGG 136 Query: 66 V---VILVGPSGSGKSCLAN-----IWSDKSRS--------TRFSNIAKSLDSILID--- 106 + L G +G GK+ L + I + K + ++ K+L + I+ Sbjct: 137 AYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFK 196 Query: 107 ----TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC 159 + +L++DI + + FH N++ + + +++T+ +P L Sbjct: 197 RYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLK 256 Query: 160 SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 SR V I P+ + +++K + I + ++A +I +R+ ++ E ++++ Sbjct: 257 SRFGWGLTVAIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRV 316 Query: 220 DNLALSRGMGITRSLAAEVLKET 242 A G IT E L++ Sbjct: 317 IANANFTGRAITIDFVREALRDL 339 >gi|242372602|ref|ZP_04818176.1| replication initiation protein DnaA [Staphylococcus epidermidis M23864:W1] gi|242349657|gb|EES41258.1| replication initiation protein DnaA [Staphylococcus epidermidis M23864:W1] Length = 455 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 91/233 (39%), Gaps = 28/233 (12%) Query: 40 RDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW-----SDKSRST 91 D ++ A + P+ + + G G GK+ L + S++ + Sbjct: 124 FDTFVIGPGNRFPHAASLAVAEAPAEAYNPLFIYGGVGLGKTHLMHAIGHHVLSNQPNAK 183 Query: 92 RFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINSI 133 ++ + I + + +L++DI + + + FH N + Sbjct: 184 VIYTSSEKFTNEFIKSIRDNETEAFREKYRNIDVLLIDDIQFIQNKEQTQEEFFHTFNEL 243 Query: 134 HQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 HQ + +++++ P L D L SR + +V I+ PD + ++ K + + Sbjct: 244 HQNNKQIVISSDRPPKEIA-KLEDRLRSRFEWGLIVDITPPDYETRMAILQKKIEEENLD 302 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 I + YI +++ ++ E + ++ + +G IT L AE LK+ Q Sbjct: 303 IPPEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPITTELTAEALKDIIQA 355 >gi|325278758|ref|YP_004251300.1| Chromosomal replication initiator protein dnaA [Odoribacter splanchnicus DSM 20712] gi|324310567|gb|ADY31120.1| Chromosomal replication initiator protein dnaA [Odoribacter splanchnicus DSM 20712] Length = 474 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 43/267 (16%), Positives = 91/267 (34%), Gaps = 35/267 (13%) Query: 9 SFFVPDKQKNDQPKNKEE----QLFFSFPRCLGISRDDLLVHSAIEQAV----RLIDSWP 60 S D+ + KN E Q+ + + + + A + Sbjct: 107 STVYLDQTGHSTLKNPFERASNQIQIDSQLNPSYTMESYIEGNCNRLARSAGMAIAQKPG 166 Query: 61 SWPSRVVILVGPSGSGKSCLAN---------------------IWSDK-SRSTRFSNIAK 98 +++ G SG GK+ LA I+ + + + R + + Sbjct: 167 GTAFNPLLIYGGSGLGKTHLAQAIGLEVKQNFPNKVVLYVSTNIFQTQFTEAVRRNEVND 226 Query: 99 SLDSILIDTRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 L + ++L+DI L FHI N +HQ L++T P Sbjct: 227 FLHFYQL--IDVLILDDIQELAGKTGTQNTFFHIFNHLHQSGKQLILTCDKAPAELEGME 284 Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215 L SR + +I PD D +++++ I +++ YI + ++ ++ E Sbjct: 285 DRLLSRFRWGLSAEIKAPDFDTRKEIVLNKARKDGIDFSEEVIEYICKYVDHNVRELEGA 344 Query: 216 VDKMDNLALSRGMGITRSLAAEVLKET 242 + + + +T + ++L + Sbjct: 345 MISLLAQSTFNKRDLTVDVVRDILGKM 371 >gi|307133247|ref|YP_003885263.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Dickeya dadantii 3937] gi|306530776|gb|ADN00707.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Dickeya dadantii 3937] Length = 462 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 91/235 (38%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + D+ + + + A P + L G +G GK+ L + I + Sbjct: 127 VNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIIA 186 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 187 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 246 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 247 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 306 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 307 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRSITIDFVREALRDL 361 >gi|183597172|ref|ZP_02958665.1| hypothetical protein PROSTU_00415 [Providencia stuartii ATCC 25827] gi|188023486|gb|EDU61526.1| hypothetical protein PROSTU_00415 [Providencia stuartii ATCC 25827] Length = 463 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + D+ + + + A P + L G +G GK+ L + I Sbjct: 128 VNPKHTFDNFVEGKSNQLARAAARQVAENPGGAYNPLFLYGGTGLGKTHLLHAVGNSIMQ 187 Query: 86 DKSRSTRF--------SNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K+ + ++ K+L + I+ + +L++DI + + F Sbjct: 188 HKANARVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 247 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 248 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 307 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + +I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 308 ENEIQLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 362 >gi|153821932|ref|ZP_01974599.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae B33] gi|126520552|gb|EAZ77775.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae B33] Length = 370 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 90/235 (38%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--- 87 ++ + + + A R + P + L G +G GK+ L + + Sbjct: 35 VNPKHKFNNFVEGKSNQLGLAAARQVSDNPGAAYNPLFLYGGTGLGKTHLLHAVGNAIVD 94 Query: 88 ----------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 ++ K+L + I+ + +L++DI + + F Sbjct: 95 NNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 154 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 155 HTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAE 214 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 D QI + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 215 DHQIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 269 >gi|91791370|ref|YP_561021.1| chromosomal replication initiation protein [Shewanella denitrificans OS217] gi|122969114|sp|Q12TC8|DNAA_SHEDO RecName: Full=Chromosomal replication initiator protein DnaA gi|91713372|gb|ABE53298.1| chromosomal replication initiator protein DnaA [Shewanella denitrificans OS217] Length = 462 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 35/235 (14%), Positives = 90/235 (38%), Gaps = 28/235 (11%) Query: 35 CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN-----IWS 85 D+ + + A+++ ++ P + L G +G GK+ L + I Sbjct: 128 NPTYQFDNFVEGKSNQLGKAAAMQVAEN-PGGAYNPLFLYGGTGLGKTHLLHAVGNGIIK 186 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLF 127 + + ++ ++ + +E+ +D L +D + F Sbjct: 187 NNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQFFANKDRSQEEFF 246 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + ++++ Sbjct: 247 HTFNALLEGNHQIILTSDRYPKEIDGVEDRLKSRFGWGLTVAIEPPELETRVAILMRKAQ 306 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A ++ +R+ ++ E ++++ A G IT E L++ Sbjct: 307 ESGINLPDEVAFFVAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 361 >gi|268678645|ref|YP_003303076.1| chromosomal replication initiator protein DnaA [Sulfurospirillum deleyianum DSM 6946] gi|268616676|gb|ACZ11041.1| chromosomal replication initiator protein DnaA [Sulfurospirillum deleyianum DSM 6946] Length = 441 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 85/232 (36%), Gaps = 24/232 (10%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDKSRST 91 + + +V S+ + A S P V + GP+G GK+ L + + ++S Sbjct: 106 NPSYTFNSFVVGSSNQYAYTAAKSVAEKPGVMYNPVFIYGPTGLGKTHLIHAIGNYAQSK 165 Query: 92 RFSNIAKSLDSILID------------------TRKPVLLEDIDLLD---FNDTQLFHII 130 I +++ + D + +L++D L + FH Sbjct: 166 GKIVIYATIEQFMNDFTYNLRNQSMERFREKYRSCDVLLIDDTQFLSNKIQTQEEFFHTF 225 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N +H +++T+ P L SR + + + LP+ + +I K Sbjct: 226 NELHSAGKQIVLTSDKPPKMINGLEDRLKSRFEWGLIADVGLPELETKIAIIKKKCELDG 285 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 I ++ + YI M ++ E + ++ AL IT A V++E Sbjct: 286 INLNSDIVNYIASNMGDNIREIESAIINLNAYALLMRQDITLEFAKNVMREQ 337 >gi|268593488|ref|ZP_06127709.1| DNA biosynthesis protein [Providencia rettgeri DSM 1131] gi|291310910|gb|EFE51363.1| DNA biosynthesis protein [Providencia rettgeri DSM 1131] Length = 463 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + D+ + + + A P + L G +G GK+ L + I Sbjct: 128 VNPKHTFDNFVEGKSNQLARAAARQVAENPGGAYNPLFLYGGTGLGKTHLLHAVGNSIMQ 187 Query: 86 DKSRSTRF--------SNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K+ + ++ K+L + I+ + +L++DI + + F Sbjct: 188 HKANARVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 247 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 248 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 307 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + +I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 308 ENEIQLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 362 >gi|145297125|ref|YP_001139966.1| chromosomal replication initiation protein [Aeromonas salmonicida subsp. salmonicida A449] gi|166201858|sp|A4SH46|DNAA_AERS4 RecName: Full=Chromosomal replication initiator protein DnaA gi|142849897|gb|ABO88218.1| chromosomal replication initiator protein DnaA [Aeromonas salmonicida subsp. salmonicida A449] Length = 456 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 36/235 (15%), Positives = 89/235 (37%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDK--- 87 + + ++ + + + A P + L G +G GK+ L + + Sbjct: 121 TNVNYTFENFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNAIKE 180 Query: 88 ----------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 ++ K+L + I+ + +L++DI + + F Sbjct: 181 RKKDAKVIYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 240 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + ++++ Sbjct: 241 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMRKAD 300 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + QI + ++A +I +R+ ++ E ++++ A G I E L++ Sbjct: 301 ENQIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAINIDFVREALRDL 355 >gi|317494667|ref|ZP_07953079.1| chromosomal replication initiator protein DnaA [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917269|gb|EFV38616.1| chromosomal replication initiator protein DnaA [Enterobacteriaceae bacterium 9_2_54FAA] Length = 466 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 43/248 (17%), Positives = 96/248 (38%), Gaps = 28/248 (11%) Query: 23 NKEEQ--LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGK 77 N Q L + + D+ + + + A P + L G +G GK Sbjct: 118 NSPAQPELSYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGK 177 Query: 78 SCLAN-----IWSDKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDID 117 + L + I + K+ + ++ K+L + I+ + +L++DI Sbjct: 178 THLLHAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQ 237 Query: 118 LLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 + + FH N++ + + +++T+ +P L SR V I P+ Sbjct: 238 FFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPE 297 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234 + +++K + I + ++A +I +R+ ++ E ++++ A G IT Sbjct: 298 LETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDF 357 Query: 235 AAEVLKET 242 E L++ Sbjct: 358 VREALRDL 365 >gi|261213263|ref|ZP_05927545.1| chromosomal replication initiator protein dnaA [Vibrio sp. RC341] gi|260837537|gb|EEX64240.1| chromosomal replication initiator protein dnaA [Vibrio sp. RC341] Length = 458 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 90/235 (38%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--- 87 ++ + + + A R + P + L G +G GK+ L + + Sbjct: 123 VNPKHKFNNFVEGKSNQLGLAAARQVSDNPGAAYNPLFLYGGTGLGKTHLLHAVGNAIVD 182 Query: 88 ----------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 ++ K+L + I+ + +L++DI + + F Sbjct: 183 NNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 242 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 243 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAE 302 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 D QI + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 303 DHQIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 357 >gi|150387854|ref|YP_001317903.1| chromosomal replication initiation protein [Alkaliphilus metalliredigens QYMF] gi|167016895|sp|A6TJ76|DNAA_ALKMQ RecName: Full=Chromosomal replication initiator protein DnaA gi|149947716|gb|ABR46244.1| chromosomal replication initiator protein DnaA [Alkaliphilus metalliredigens QYMF] Length = 448 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 42/267 (15%), Positives = 104/267 (38%), Gaps = 35/267 (13%) Query: 10 FFVPDKQK-----NDQPKNKEEQLFF----SFPRCLGISRDDLLVHSAIEQAVRL---ID 57 VP +++ N + Q + D ++ ++ A + Sbjct: 79 IVVPSEERVGDTQNINARRSNAQSPIMGNSPLILNPKYTFDTFVIGNSNRFAHAASVAVA 138 Query: 58 SWPSWPSRVVILVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDTRK--- 109 P+ + + G G GK+ L N I ++ ++ +++ + LI++ + Sbjct: 139 ESPAKAYNPLFIYGGVGLGKTHLMNAIGHYILANNPKAKVVYVSSETFTNELINSIRDDR 198 Query: 110 ------------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 +L++DI + + + FH N++H+ + +++++ P Sbjct: 199 NVEFRNRYRNVDVLLVDDIQFIAGKERTQEEFFHTFNALHESNKQIIISSDRPPKEIPTL 258 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 L SR + + I PD + ++ K I++ ++ A+I ++++ ++ E Sbjct: 259 EERLRSRFEWGLITDIQPPDLETRIAILRKKAQMENIYVPDEVTAHIAKKIQSNIRELEG 318 Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKE 241 + ++ + +T LA+E LKE Sbjct: 319 ALIRIVAYSSLTNSEVTVELASEALKE 345 >gi|45443728|ref|NP_995267.1| chromosomal replication initiation protein [Yersinia pestis biovar Microtus str. 91001] gi|51598227|ref|YP_072418.1| chromosomal replication initiation protein [Yersinia pseudotuberculosis IP 32953] gi|108810133|ref|YP_654049.1| chromosomal replication initiation protein [Yersinia pestis Antiqua] gi|108814115|ref|YP_649882.1| chromosomal replication initiation protein [Yersinia pestis Nepal516] gi|145597325|ref|YP_001161400.1| chromosomal replication initiation protein [Yersinia pestis Pestoides F] gi|150260968|ref|ZP_01917696.1| chromosomal replication initiator protein [Yersinia pestis CA88-4125] gi|153950668|ref|YP_001403095.1| chromosomal replication initiation protein [Yersinia pseudotuberculosis IP 31758] gi|162419763|ref|YP_001608448.1| chromosomal replication initiation protein [Yersinia pestis Angola] gi|165926099|ref|ZP_02221931.1| chromosomal replication initiator protein DnaA [Yersinia pestis biovar Orientalis str. F1991016] gi|166009506|ref|ZP_02230404.1| chromosomal replication initiator protein DnaA [Yersinia pestis biovar Antiqua str. E1979001] gi|166213287|ref|ZP_02239322.1| chromosomal replication initiator protein DnaA [Yersinia pestis biovar Antiqua str. B42003004] gi|167401560|ref|ZP_02307054.1| chromosomal replication initiator protein DnaA [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422851|ref|ZP_02314604.1| chromosomal replication initiator protein DnaA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425478|ref|ZP_02317231.1| chromosomal replication initiator protein DnaA [Yersinia pestis biovar Mediaevalis str. K1973002] gi|218931074|ref|YP_002348949.1| chromosomal replication initiation protein [Yersinia pestis CO92] gi|229839804|ref|ZP_04459963.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Yersinia pestis biovar Orientalis str. PEXU2] gi|229841889|ref|ZP_04462045.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Yersinia pestis biovar Orientalis str. India 195] gi|229896766|ref|ZP_04511929.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Yersinia pestis Pestoides A] gi|229904654|ref|ZP_04519765.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Yersinia pestis Nepal516] gi|270488365|ref|ZP_06205439.1| chromosomal replication initiator protein DnaA [Yersinia pestis KIM D27] gi|294505625|ref|YP_003569687.1| chromosomal replication initiation protein [Yersinia pestis Z176003] gi|21362472|sp|Q8Z9U7|DNAA_YERPE RecName: Full=Chromosomal replication initiator protein DnaA gi|61212542|sp|Q663T2|DNAA_YERPS RecName: Full=Chromosomal replication initiator protein DnaA gi|123073045|sp|Q1CCJ8|DNAA_YERPN RecName: Full=Chromosomal replication initiator protein DnaA gi|123371953|sp|Q1C0B8|DNAA_YERPA RecName: Full=Chromosomal replication initiator protein DnaA gi|166215370|sp|A4TGL5|DNAA_YERPP RecName: Full=Chromosomal replication initiator protein DnaA gi|167016907|sp|A7FPB7|DNAA_YERP3 RecName: Full=Chromosomal replication initiator protein DnaA gi|226735866|sp|A9R5R5|DNAA_YERPG RecName: Full=Chromosomal replication initiator protein DnaA gi|45438598|gb|AAS64144.1| chromosomal replication initiator protein [Yersinia pestis biovar Microtus str. 91001] gi|51591509|emb|CAH23181.1| chromosomal replication initiator protein [Yersinia pseudotuberculosis IP 32953] gi|108777763|gb|ABG20282.1| chromosomal replication initiator protein DnaA [Yersinia pestis Nepal516] gi|108782046|gb|ABG16104.1| chromosomal replication initiator protein DnaA [Yersinia pestis Antiqua] gi|115349685|emb|CAL22666.1| chromosomal replication initiator protein [Yersinia pestis CO92] gi|145209021|gb|ABP38428.1| chromosomal replication initiator protein [Yersinia pestis Pestoides F] gi|149290376|gb|EDM40453.1| chromosomal replication initiator protein [Yersinia pestis CA88-4125] gi|152962163|gb|ABS49624.1| chromosomal replication initiator protein DnaA [Yersinia pseudotuberculosis IP 31758] gi|162352578|gb|ABX86526.1| chromosomal replication initiator protein DnaA [Yersinia pestis Angola] gi|165921959|gb|EDR39136.1| chromosomal replication initiator protein DnaA [Yersinia pestis biovar Orientalis str. F1991016] gi|165991428|gb|EDR43729.1| chromosomal replication initiator protein DnaA [Yersinia pestis biovar Antiqua str. E1979001] gi|166205585|gb|EDR50065.1| chromosomal replication initiator protein DnaA [Yersinia pestis biovar Antiqua str. B42003004] gi|166958243|gb|EDR55264.1| chromosomal replication initiator protein DnaA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048942|gb|EDR60350.1| chromosomal replication initiator protein DnaA [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055492|gb|EDR65285.1| chromosomal replication initiator protein DnaA [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229678772|gb|EEO74877.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Yersinia pestis Nepal516] gi|229691228|gb|EEO83281.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Yersinia pestis biovar Orientalis str. India 195] gi|229696170|gb|EEO86217.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700204|gb|EEO88240.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Yersinia pestis Pestoides A] gi|270336869|gb|EFA47646.1| chromosomal replication initiator protein DnaA [Yersinia pestis KIM D27] gi|294356084|gb|ADE66425.1| chromosomal replication initiation protein [Yersinia pestis Z176003] gi|320017427|gb|ADW00999.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 462 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 43/248 (17%), Positives = 96/248 (38%), Gaps = 28/248 (11%) Query: 23 NKEEQ--LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGK 77 N Q L + + D+ + + + A P + L G +G GK Sbjct: 114 NSPAQPELSYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGK 173 Query: 78 SCLAN-----IWSDKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDID 117 + L + I + K+ + ++ K+L + I+ + +L++DI Sbjct: 174 THLLHAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQ 233 Query: 118 LLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 + + FH N++ + + +++T+ +P L SR V I P+ Sbjct: 234 FFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPE 293 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234 + +++K + I + ++A +I +R+ ++ E ++++ A G IT Sbjct: 294 LETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDF 353 Query: 235 AAEVLKET 242 E L++ Sbjct: 354 VREALRDL 361 >gi|163751709|ref|ZP_02158928.1| chromosomal replication initiation protein [Shewanella benthica KT99] gi|161328448|gb|EDP99604.1| chromosomal replication initiation protein [Shewanella benthica KT99] Length = 396 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 41/265 (15%), Positives = 96/265 (36%), Gaps = 35/265 (13%) Query: 13 PDKQKNDQPKNKEEQLFFSFPR---------CLGISRDDLLVHSAIE---QAVRLIDSWP 60 P Q N +P + P D+ + + + A + + P Sbjct: 31 PRVQMNTRPARTAFNVNMPEPAIMTNHRSNINPAYQFDNFVEGKSNQLGKAAAQQVAENP 90 Query: 61 SWPSRVVILVGPSGSGKSCLANIWSDK-------------SRSTRFSNIAKSLDSILID- 106 + L G +G GK+ L + + ++ K+L + I+ Sbjct: 91 GGAYNPLFLYGGTGLGKTHLLHAVGNAIIKNNPNAKVVYMHSERFVQDMVKALQNNAIEE 150 Query: 107 ------TRKPVLLEDID---LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 + + ++DI D + + FH N++ + + +++T+ +P Sbjct: 151 FKRYYRSVDALFIDDIQFFANKDRSQEEFFHTFNALLEGNHQVILTSDKYPKEIDGVEDR 210 Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 L SR V I P+ + ++++ + + + ++A +I +R+ ++ E ++ Sbjct: 211 LKSRFGWGLTVAIEPPELETRVAILMRKALESGVNLPDEVAFFIAKRLRSNVRELEGALN 270 Query: 218 KMDNLALSRGMGITRSLAAEVLKET 242 ++ A G IT E L++ Sbjct: 271 RVIANANFTGRPITIDFVREALRDL 295 >gi|22127981|ref|NP_671404.1| chromosomal replication initiation protein [Yersinia pestis KIM 10] gi|21961126|gb|AAM87655.1|AE014012_12 DNA biosynthesis protein [Yersinia pestis KIM 10] Length = 466 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 43/248 (17%), Positives = 96/248 (38%), Gaps = 28/248 (11%) Query: 23 NKEEQ--LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGK 77 N Q L + + D+ + + + A P + L G +G GK Sbjct: 118 NSPAQPELSYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGK 177 Query: 78 SCLAN-----IWSDKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDID 117 + L + I + K+ + ++ K+L + I+ + +L++DI Sbjct: 178 THLLHAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQ 237 Query: 118 LLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 + + FH N++ + + +++T+ +P L SR V I P+ Sbjct: 238 FFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPE 297 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234 + +++K + I + ++A +I +R+ ++ E ++++ A G IT Sbjct: 298 LETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDF 357 Query: 235 AAEVLKET 242 E L++ Sbjct: 358 VREALRDL 365 >gi|262367726|gb|ACY64283.1| chromosomal replication initiator protein [Yersinia pestis D182038] Length = 462 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 43/248 (17%), Positives = 96/248 (38%), Gaps = 28/248 (11%) Query: 23 NKEEQ--LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGK 77 N Q L + + D+ + + + A P + L G +G GK Sbjct: 114 NSPAQPELSYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGK 173 Query: 78 SCLAN-----IWSDKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDID 117 + L + I + K+ + ++ K+L + I+ + +L++DI Sbjct: 174 THLLHAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQ 233 Query: 118 LLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 + + FH N++ + + +++T+ +P L SR V I P+ Sbjct: 234 FFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPE 293 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234 + +++K + I + ++A +I +R+ ++ E ++++ A G IT Sbjct: 294 LETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDF 353 Query: 235 AAEVLKET 242 E L++ Sbjct: 354 VREALRDL 361 >gi|262166785|ref|ZP_06034522.1| chromosomal replication initiator protein dnaA [Vibrio mimicus VM223] gi|262026501|gb|EEY45169.1| chromosomal replication initiator protein dnaA [Vibrio mimicus VM223] Length = 421 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 90/235 (38%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--- 87 ++ + + + A R + P + L G +G GK+ L + + Sbjct: 86 VNPKHKFNNFVEGKSNQLGLAAARQVSDNPGAAYNPLFLYGGTGLGKTHLLHAVGNAIVD 145 Query: 88 ----------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 ++ K+L + I+ + +L++DI + + F Sbjct: 146 NNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 205 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 206 HTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAE 265 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 D QI + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 266 DHQIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 320 >gi|302388600|ref|YP_003824421.1| chromosomal replication initiator protein DnaA [Thermosediminibacter oceani DSM 16646] gi|302199228|gb|ADL06798.1| chromosomal replication initiator protein DnaA [Thermosediminibacter oceani DSM 16646] Length = 449 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 39/253 (15%), Positives = 94/253 (37%), Gaps = 30/253 (11%) Query: 16 QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGP 72 +K+ +P +E Q + + D +V ++ A + P+ + G Sbjct: 98 EKDIKPVAEEGQSTLN----SKYTFDTFVVGNSNRFAHAASLAVAQAPAKAYNPFFIYGG 153 Query: 73 SGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTRKPV---L 112 G GK+ L + S+K + ++I + + + + L Sbjct: 154 VGLGKTHLMHAIGHYILQHNPSCKVVYVSSEKFTNELINSIRDDKNVEFRNKYRNIDVLL 213 Query: 113 LEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 ++DI + + + FH N++++ + +++++ P L SR + + Sbjct: 214 IDDIQFIAGKERTQEEFFHTFNALYEANKQIIISSDRPPKEIPTLEERLRSRFEWGLITD 273 Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229 I PD + ++ K + + + +I ++E ++ E + ++ + Sbjct: 274 IQPPDFETRIAILRKKAMMENLTVPDDVINFIATKIETNIRELEGALIRIVAFSSLTNKP 333 Query: 230 ITRSLAAEVLKET 242 I LA VLK+ Sbjct: 334 IDLDLAEHVLKDL 346 >gi|238787828|ref|ZP_04631625.1| Chromosomal replication initiator protein dnaA [Yersinia frederiksenii ATCC 33641] gi|238724171|gb|EEQ15814.1| Chromosomal replication initiator protein dnaA [Yersinia frederiksenii ATCC 33641] Length = 462 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + D+ + + + A P + L G +G GK+ L + I + Sbjct: 127 VNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 186 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K+ + ++ K+L + I+ + +L++DI + + F Sbjct: 187 RKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 246 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 247 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 306 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 307 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 361 >gi|271498579|ref|YP_003331604.1| chromosomal replication initiator protein DnaA [Dickeya dadantii Ech586] gi|270342134|gb|ACZ74899.1| chromosomal replication initiator protein DnaA [Dickeya dadantii Ech586] Length = 462 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 91/235 (38%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + D+ + + + A P + L G +G GK+ L + I + Sbjct: 127 VNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIIA 186 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 187 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 246 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 247 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 306 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 307 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRSITIDFVREALRDL 361 >gi|319951594|ref|YP_004162861.1| chromosomal replication initiator protein dnaa [Cellulophaga algicola DSM 14237] gi|319420254|gb|ADV47363.1| chromosomal replication initiator protein DnaA [Cellulophaga algicola DSM 14237] Length = 474 Score = 122 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 43/269 (15%), Positives = 97/269 (36%), Gaps = 39/269 (14%) Query: 12 VPDKQKNDQPKNKEEQL--FFSFP----------RCLGISRDDLLVHSAIEQAVRLIDSW 59 VP ++ + K+K QL F P + ++ L + A + Sbjct: 105 VPAQELDVAIKSKNPQLKNPFIIPGIRNIKIESQLNPNYNFENFLEGDSNRLARSAGMAV 164 Query: 60 PSWPSRV----VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAK 98 + P +++ G G GK+ LA+ ++K ++ K Sbjct: 165 ANKPGGTSFNPLLIFGGVGLGKTHLAHAIGVEIKDKYPERTVLYISAEKFTQQYIESVKK 224 Query: 99 SLDSILIDTRKPV---LLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWG 152 + + I + + +++D+ L FHI N +HQ +++T+ PV Sbjct: 225 NTRNDFIHFYQLIDVLIIDDVQFLSGKSGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQ 284 Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 L SR K ++ PD + ++ + + + Y+ + ++ ++ Sbjct: 285 DIEQRLLSRFKWGLSAELQNPDYETRISILKNKLYRDGVEMPDDIIDYVAKHIKTNIREL 344 Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKE 241 E + + + +T LA +V+++ Sbjct: 345 EGAIISLIAQSSFNKKEVTLDLAQQVVEK 373 >gi|238793143|ref|ZP_04636771.1| Chromosomal replication initiator protein dnaA [Yersinia intermedia ATCC 29909] gi|238727516|gb|EEQ19042.1| Chromosomal replication initiator protein dnaA [Yersinia intermedia ATCC 29909] Length = 462 Score = 122 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + D+ + + + A P + L G +G GK+ L + I + Sbjct: 127 VNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 186 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K+ + ++ K+L + I+ + +L++DI + + F Sbjct: 187 RKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 246 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 247 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 306 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 307 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 361 >gi|260912769|ref|ZP_05919255.1| ribosomal subunit interface protein [Pasteurella dagmatis ATCC 43325] gi|260633147|gb|EEX51312.1| ribosomal subunit interface protein [Pasteurella dagmatis ATCC 43325] Length = 453 Score = 122 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 90/235 (38%), Gaps = 27/235 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWP----SRVVILVGPSGSGKSCLAN-----IWS 85 ++ + + + A + P S + L G +G GK+ L + I + Sbjct: 118 NPKHVFENFVEGKSNQLARAVAQKVADNPGETSSNPLFLYGGTGLGKTHLLHAIGNGILA 177 Query: 86 DKSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLF 127 +K + A + LI+ + +L++DI + + F Sbjct: 178 NKPNARVLYIHANNFIQQLINAIRDNKMDEFKKFYRSLDALLVDDIQFFAEKEKTQEEFF 237 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 HI N++ +++T+ +P L SR I P+ + +++K Sbjct: 238 HIFNNLFDAGRQIILTSDRYPKEIEKLEERLKSRFGWGLTTAIEPPELETRVAILLKKAE 297 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ I + +++A +I Q++ ++ E ++++ A G IT E LK+ Sbjct: 298 EKNIHLPEEVAFFIGQKLRTNVRDLEGALNRVGANAEFMGAPITIDFVRETLKDM 352 >gi|323705848|ref|ZP_08117420.1| chromosomal replication initiator protein DnaA [Thermoanaerobacterium xylanolyticum LX-11] gi|323534844|gb|EGB24623.1| chromosomal replication initiator protein DnaA [Thermoanaerobacterium xylanolyticum LX-11] Length = 443 Score = 122 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 36/233 (15%), Positives = 90/233 (38%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW-----SD 86 + D +V ++ + A + P+R + + G G GK+ L + Sbjct: 109 NPKYTFDTFVVGNSNKLAHAACLAVAQSPARAYNPLFIYGGVGLGKTHLMHAIGHFVLEH 168 Query: 87 KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 S + +++ + L+++ K +L++DI + + + FH Sbjct: 169 NSNTKIMYVTSETFTNELVNSIKDDKNEEFRNKYRSMDILLIDDIQFIAKKERTQEEFFH 228 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++++ + +++++ P L SR + + I PD + ++ K + Sbjct: 229 TFNTLYEANKQIIVSSDRPPKEIPTLEDRLRSRFEWGLIADIQPPDFETRIAILKKKAQN 288 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I + YI +++ ++ E + ++ + I LA + LK+ Sbjct: 289 ENLNIPDDVLVYIAEKIPSNIRELEGALIRIVAFSSLTKANIDLDLAKDALKD 341 >gi|50123359|ref|YP_052526.1| chromosomal replication initiation protein [Pectobacterium atrosepticum SCRI1043] gi|61212568|sp|Q6CYR4|DNAA_ERWCT RecName: Full=Chromosomal replication initiator protein DnaA gi|49613885|emb|CAG77337.1| chromosomal replication initiator protein [Pectobacterium atrosepticum SCRI1043] Length = 465 Score = 122 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 91/235 (38%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + D+ + + + A P + L G +G GK+ L + I + Sbjct: 130 VNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIIA 189 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 190 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 249 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 250 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 309 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 310 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRSITIDFVREALRDL 364 >gi|123444342|ref|YP_001008307.1| chromosomal replication initiation protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332163521|ref|YP_004300098.1| chromosomal replication initiation protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|166215369|sp|A1JT80|DNAA_YERE8 RecName: Full=Chromosomal replication initiator protein DnaA gi|122091303|emb|CAL14189.1| chromosomal replication initiator protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318608025|emb|CBY29523.1| chromosomal replication initiator protein DNAA [Yersinia enterocolitica subsp. palearctica Y11] gi|325667751|gb|ADZ44395.1| chromosomal replication initiation protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330861746|emb|CBX71920.1| chromosomal replication initiator protein dnaA [Yersinia enterocolitica W22703] Length = 462 Score = 122 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 43/250 (17%), Positives = 96/250 (38%), Gaps = 28/250 (11%) Query: 19 DQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGS 75 P E L + + D+ + + + A P + L G +G Sbjct: 114 SSPAQPE--LSYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGL 171 Query: 76 GKSCLAN-----IWSDKSRS--------TRFSNIAKSLDSILID-------TRKPVLLED 115 GK+ L + I + K+ + ++ K+L + I+ + +L++D Sbjct: 172 GKTHLLHAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDD 231 Query: 116 IDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 I + + FH N++ + + +++T+ +P L SR V I Sbjct: 232 IQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEP 291 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232 P+ + +++K + I + ++A +I +R+ ++ E ++++ A G IT Sbjct: 292 PELETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITI 351 Query: 233 SLAAEVLKET 242 E L++ Sbjct: 352 DFVREALRDL 361 >gi|238783048|ref|ZP_04627075.1| Chromosomal replication initiator protein dnaA [Yersinia bercovieri ATCC 43970] gi|238716049|gb|EEQ08034.1| Chromosomal replication initiator protein dnaA [Yersinia bercovieri ATCC 43970] Length = 463 Score = 122 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + D+ + + + A P + L G +G GK+ L + I + Sbjct: 128 VNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 187 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K+ + ++ K+L + I+ + +L++DI + + F Sbjct: 188 RKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 247 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 248 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 307 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 308 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 362 >gi|330827701|ref|YP_004390653.1| chromosomal replication initiator protein DnaA [Aeromonas veronii B565] gi|328802837|gb|AEB48036.1| Chromosomal replication initiator protein dnaA [Aeromonas veronii B565] Length = 456 Score = 122 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 36/235 (15%), Positives = 89/235 (37%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDK--- 87 + + ++ + + + A P + L G +G GK+ L + + Sbjct: 121 TNVNYTFENFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNAIKE 180 Query: 88 ----------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 ++ K+L + I+ + +L++DI + + F Sbjct: 181 SKKDAKVIYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 240 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + ++++ Sbjct: 241 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMRKAD 300 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + QI + ++A +I +R+ ++ E ++++ A G I E L++ Sbjct: 301 ENQIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAINIDFVREALRDL 355 >gi|160885204|ref|ZP_02066207.1| hypothetical protein BACOVA_03202 [Bacteroides ovatus ATCC 8483] gi|237714833|ref|ZP_04545314.1| chromosomal replication initiator protein dnaA [Bacteroides sp. D1] gi|237720012|ref|ZP_04550493.1| chromosomal replication initiator protein dnaA [Bacteroides sp. 2_2_4] gi|262406895|ref|ZP_06083444.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 2_1_22] gi|293368855|ref|ZP_06615459.1| chromosomal replication initiator protein DnaA [Bacteroides ovatus SD CMC 3f] gi|294643068|ref|ZP_06720907.1| chromosomal replication initiator protein DnaA [Bacteroides ovatus SD CC 2a] gi|294807803|ref|ZP_06766593.1| chromosomal replication initiator protein DnaA [Bacteroides xylanisolvens SD CC 1b] gi|298479865|ref|ZP_06998065.1| ATPase involved in DNA replication initiation [Bacteroides sp. D22] gi|299147890|ref|ZP_07040953.1| ATPase involved in DNA replication initiation [Bacteroides sp. 3_1_23] gi|156109554|gb|EDO11299.1| hypothetical protein BACOVA_03202 [Bacteroides ovatus ATCC 8483] gi|229445158|gb|EEO50949.1| chromosomal replication initiator protein dnaA [Bacteroides sp. D1] gi|229450564|gb|EEO56355.1| chromosomal replication initiator protein dnaA [Bacteroides sp. 2_2_4] gi|262355598|gb|EEZ04689.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 2_1_22] gi|292636160|gb|EFF54648.1| chromosomal replication initiator protein DnaA [Bacteroides ovatus SD CMC 3f] gi|292641587|gb|EFF59766.1| chromosomal replication initiator protein DnaA [Bacteroides ovatus SD CC 2a] gi|294445000|gb|EFG13677.1| chromosomal replication initiator protein DnaA [Bacteroides xylanisolvens SD CC 1b] gi|295084766|emb|CBK66289.1| chromosomal replication initiator protein DnaA [Bacteroides xylanisolvens XB1A] gi|298274255|gb|EFI15816.1| ATPase involved in DNA replication initiation [Bacteroides sp. D22] gi|298514073|gb|EFI37959.1| ATPase involved in DNA replication initiation [Bacteroides sp. 3_1_23] Length = 470 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 39/242 (16%), Positives = 81/242 (33%), Gaps = 28/242 (11%) Query: 33 PR-CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV----VILVGPSGSGKSCLANIWSDK 87 P + ++ + + + + + ++ P + L G SG GK+ LAN K Sbjct: 130 PHLNPNYNFENFIEGYSNKLSRSVAEAVAQKPGGTAFNPLFLYGASGVGKTHLANAIGTK 189 Query: 88 SRSTRFSNIAKSLDSILID--------------------TRKPVLLEDIDLLDF---NDT 124 + + + L T ++++DI Sbjct: 190 IKEIYPEKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQTIDVLIIDDIQEFAGVTKTQN 249 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 FHI N +HQ L++T+ PV L +R K V ++ P + + ++ Sbjct: 250 NFFHIFNHLHQNGKQLILTSDRAPVLLQGIEERLLTRFKWGMVAELEKPTVELRKNILRN 309 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 + ++ YI + + S+ E +V + + I LA ++ Sbjct: 310 KIHRDGLQFPPEVIDYIAENVNESVRDLEGIVIAIMARSTIFNKEIDLDLAQHIVHGVVH 369 Query: 245 CD 246 + Sbjct: 370 NE 371 >gi|153808748|ref|ZP_01961416.1| hypothetical protein BACCAC_03047 [Bacteroides caccae ATCC 43185] gi|149128574|gb|EDM19792.1| hypothetical protein BACCAC_03047 [Bacteroides caccae ATCC 43185] Length = 470 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 39/242 (16%), Positives = 81/242 (33%), Gaps = 28/242 (11%) Query: 33 PR-CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV----VILVGPSGSGKSCLANIWSDK 87 P + ++ + + + + + ++ P + L G SG GK+ LAN K Sbjct: 130 PHLNPNYNFENFIEGYSNKLSRSVAEAVAQKPGGTAFNPLFLYGASGVGKTHLANAIGTK 189 Query: 88 SRSTRFSNIAKSLDSILID--------------------TRKPVLLEDIDLLDF---NDT 124 + + + L T ++++DI Sbjct: 190 IKEIYPEKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQTIDVLIIDDIQEFAGVTKTQN 249 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 FHI N +HQ L++T+ PV L +R K V ++ P + + ++ Sbjct: 250 NFFHIFNHLHQNGKQLILTSDRAPVLLQGIEERLLTRFKWGMVAELEKPTVELRKNILRN 309 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 + ++ YI + + S+ E +V + + I LA ++ Sbjct: 310 KIHRDGLQFPPEVIDYIAENVNESVRDLEGIVIAIMARSTIFNKEIDLDLAQHIVHGVVH 369 Query: 245 CD 246 + Sbjct: 370 NE 371 >gi|304315538|ref|YP_003850683.1| chromosomal replication initiator protein DnaA [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777040|gb|ADL67599.1| chromosomal replication initiator protein DnaA [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 443 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 36/233 (15%), Positives = 90/233 (38%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW-----SD 86 + D +V ++ + A + P+R + + G G GK+ L + Sbjct: 109 NPKYTFDTFVVGNSNKLAHAACLAVAQSPARAYNPLFIYGGVGLGKTHLMHAIGHFVLEH 168 Query: 87 KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 S + +++ + L+++ K +L++DI + + + FH Sbjct: 169 NSNTKIMYVTSETFTNELVNSIKDDKNEEFRNKYRSMDILLIDDIQFIAKKERTQEEFFH 228 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++++ + +++++ P L SR + + I PD + ++ K + Sbjct: 229 TFNTLYEANKQIIVSSDRPPKEIPTLEDRLRSRFEWGLIADIQPPDFETRIAILKKKAQN 288 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I + YI +++ ++ E + ++ + I LA + LK+ Sbjct: 289 ENLNIPDDVLIYIAEKIPSNIRELEGALIRIVAFSSLTKANIDLDLAKDALKD 341 >gi|78042923|ref|YP_361492.1| chromosomal replication initiation protein [Carboxydothermus hydrogenoformans Z-2901] gi|77995038|gb|ABB13937.1| chromosomal replication initiator protein DnaA [Carboxydothermus hydrogenoformans Z-2901] Length = 454 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 89/237 (37%), Gaps = 26/237 (10%) Query: 32 FPRCLGISRDDLLVHSAIEQAVRLIDS---WPSWPSRVVILVGPSGSGKSCLANIW---- 84 F + + +V ++ A + P+ + + G G GK+ L + Sbjct: 115 FTLNPKYTFETFVVGNSNRFAHAACLAVAESPAEAYNPLFIYGGVGLGKTHLMHAIGHYI 174 Query: 85 -------------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQ 125 ++K + ++I + + + L++DI L+ + + Sbjct: 175 LKNKPEMKVAYVTTEKFTNDLINSIKDDTTEEFRNKYRSIDVLLIDDIQFLEKKERTQEE 234 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 FH N++++ + +++++ P L SR + + I PD + ++ K Sbjct: 235 FFHTFNALYEANKQIVISSDRTPKELSTLEDRLRSRFEWGLITDIQPPDLETRIAILRKK 294 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + +D + +I + ++ E + ++ A G IT LAA+ LK+ Sbjct: 295 AQLDNLHVDDAVLNFIANEIVSNIRELEGALIRVVAYAGLHGEPITVDLAAKALKDL 351 >gi|329735774|gb|EGG72055.1| chromosomal replication initiator protein DnaA [Staphylococcus epidermidis VCU028] gi|329736075|gb|EGG72348.1| chromosomal replication initiator protein DnaA [Staphylococcus epidermidis VCU045] Length = 451 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 91/233 (39%), Gaps = 28/233 (12%) Query: 40 RDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW-----SDKSRST 91 D ++ A + P+ + + G G GK+ L + S+K + Sbjct: 120 FDTFVIGPGNRFPHAASLAVAEAPAEAYNPLFIYGGVGLGKTHLMHAIGHHVLSNKPNAK 179 Query: 92 RFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINSI 133 ++ + I + + +L++DI + + + FH N + Sbjct: 180 VIYTSSEKFTNEFIKSIRDNETEAFREKYRKIDVLLIDDIQFIQNKEQTQEEFFHTFNEL 239 Query: 134 HQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 HQ + +++++ P L D L SR + +V I+ PD + ++ K + + Sbjct: 240 HQNNKQIVISSDRPPKEIA-KLEDRLRSRFEWGLIVDITPPDYETRMAILQKKIEEENLD 298 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 I + YI +++ ++ E + ++ + +G IT L AE LK+ Q Sbjct: 299 IPPEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPITTELTAEALKDIIQS 351 >gi|319399914|gb|EFV88160.1| chromosomal replication initiator protein DnaA [Staphylococcus epidermidis FRI909] Length = 451 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 91/233 (39%), Gaps = 28/233 (12%) Query: 40 RDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW-----SDKSRST 91 D ++ A + P+ + + G G GK+ L + S+K + Sbjct: 120 FDTFVIGPGNRFPHAASLAVAEAPAEAYNPLFIYGGVGLGKTHLMHAIGHHVLSNKPNAK 179 Query: 92 RFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINSI 133 ++ + I + + +L++DI + + + FH N + Sbjct: 180 VIYTSSEKFTNEFIKSIRDNETEAFREKYRKIDVLLIDDIQFIQNKEQTQEEFFHTFNEL 239 Query: 134 HQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 HQ + +++++ P L D L SR + +V I+ PD + ++ K + + Sbjct: 240 HQNNKQIVISSDRPPKEIA-KLEDRLRSRFEWGLIVDITPPDYETRMAILQKKIEEENLD 298 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 I + YI +++ ++ E + ++ + +G IT L AE LK+ Q Sbjct: 299 IPPEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPITTELTAEALKDIIQS 351 >gi|293367580|ref|ZP_06614233.1| ATPase [Staphylococcus epidermidis M23864:W2(grey)] gi|291318293|gb|EFE58686.1| ATPase [Staphylococcus epidermidis M23864:W2(grey)] Length = 455 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 91/233 (39%), Gaps = 28/233 (12%) Query: 40 RDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW-----SDKSRST 91 D ++ A + P+ + + G G GK+ L + S+K + Sbjct: 124 FDTFVIGPGNRFPHAASLAVAEAPAEAYNPLFIYGGVGLGKTHLMHAIGHHVLSNKPNAK 183 Query: 92 RFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINSI 133 ++ + I + + +L++DI + + + FH N + Sbjct: 184 VIYTSSEKFTNEFIKSIRDNETEAFREKYRKIDVLLIDDIQFIQNKEQTQEEFFHTFNEL 243 Query: 134 HQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 HQ + +++++ P L D L SR + +V I+ PD + ++ K + + Sbjct: 244 HQNNKQIVISSDRPPKEIA-KLEDRLRSRFEWGLIVDITPPDYETRMAILQKKIEEENLD 302 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 I + YI +++ ++ E + ++ + +G IT L AE LK+ Q Sbjct: 303 IPPEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPITTELTAEALKDIIQS 355 >gi|251811364|ref|ZP_04825837.1| replication initiation protein DnaA [Staphylococcus epidermidis BCM-HMP0060] gi|251805113|gb|EES57770.1| replication initiation protein DnaA [Staphylococcus epidermidis BCM-HMP0060] Length = 455 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 91/233 (39%), Gaps = 28/233 (12%) Query: 40 RDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW-----SDKSRST 91 D ++ A + P+ + + G G GK+ L + S+K + Sbjct: 124 FDTFVIGPGNRFPHAASLAVAEAPAEAYNPLFIYGGVGLGKTHLMHAIGHHVLSNKPNAK 183 Query: 92 RFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINSI 133 ++ + I + + +L++DI + + + FH N + Sbjct: 184 VIYTSSEKFTNEFIKSIRDNETEAFREKYRKIDVLLIDDIQFIQNKEQTQEEFFHTFNEL 243 Query: 134 HQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 HQ + +++++ P L D L SR + +V I+ PD + ++ K + + Sbjct: 244 HQNNKQIVISSDRPPKEIA-KLEDRLRSRFEWGLIVDITPPDYETRMAILQKKIEEENLD 302 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 I + YI +++ ++ E + ++ + +G IT L AE LK+ Q Sbjct: 303 IPPEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPITTELTAEALKDIIQS 355 >gi|242243255|ref|ZP_04797700.1| replication initiation protein DnaA [Staphylococcus epidermidis W23144] gi|242233204|gb|EES35516.1| replication initiation protein DnaA [Staphylococcus epidermidis W23144] Length = 455 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 91/233 (39%), Gaps = 28/233 (12%) Query: 40 RDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW-----SDKSRST 91 D ++ A + P+ + + G G GK+ L + S+K + Sbjct: 124 FDTFVIGPGNRFPHAASLAVAEAPAEAYNPLFIYGGVGLGKTHLMHAIGHHVLSNKPNAK 183 Query: 92 RFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINSI 133 ++ + I + + +L++DI + + + FH N + Sbjct: 184 VIYTSSEKFTNEFIKSIRDNETEAFREKYRKIDVLLIDDIQFIQNKEQTQEEFFHTFNEL 243 Query: 134 HQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 HQ + +++++ P L D L SR + +V I+ PD + ++ K + + Sbjct: 244 HQNNKQIVISSDRPPKEIA-KLEDRLRSRFEWGLIVDITPPDYETRMAILQKKIEEENLD 302 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 I + YI +++ ++ E + ++ + +G IT L AE LK+ Q Sbjct: 303 IPPEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPITTELTAEALKDIIQS 355 >gi|57865939|ref|YP_190094.1| chromosomal replication initiation protein [Staphylococcus epidermidis RP62A] gi|71151806|sp|Q5HJZ9|DNAA_STAEQ RecName: Full=Chromosomal replication initiator protein DnaA gi|57636597|gb|AAW53385.1| chromosomal replication initiator protein DnaA [Staphylococcus epidermidis RP62A] Length = 451 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 91/233 (39%), Gaps = 28/233 (12%) Query: 40 RDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW-----SDKSRST 91 D ++ A + P+ + + G G GK+ L + S+K + Sbjct: 120 FDTFVIGPGNRFPHAASLAVAEAPAEAYNPLFIYGGVGLGKTHLMHAIGHHVLSNKPNAK 179 Query: 92 RFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINSI 133 ++ + I + + +L++DI + + + FH N + Sbjct: 180 VIYTSSEKFTNEFIKSIRDNETEAFREKYRKIDVLLIDDIQFIQNKEQTQEEFFHTFNEL 239 Query: 134 HQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 HQ + +++++ P L D L SR + +V I+ PD + ++ K + + Sbjct: 240 HQNNKQIVISSDRPPKEIA-KLEDRLRSRFEWGLIVDITPPDYETRMAILQKKIEEENLD 298 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 I + YI +++ ++ E + ++ + +G IT L AE LK+ Q Sbjct: 299 IPPEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPITTELTAEALKDIIQS 351 >gi|27466919|ref|NP_763556.1| chromosomal replication initiation protein [Staphylococcus epidermidis ATCC 12228] gi|282874721|ref|ZP_06283600.1| chromosomal replication initiator protein DnaA [Staphylococcus epidermidis SK135] gi|38257580|sp|Q8CQK7|DNAA_STAES RecName: Full=Chromosomal replication initiator protein DnaA gi|27314461|gb|AAO03598.1|AE016744_1 chromosomal replication initiator protein [Staphylococcus epidermidis ATCC 12228] gi|281296437|gb|EFA88952.1| chromosomal replication initiator protein DnaA [Staphylococcus epidermidis SK135] gi|329724160|gb|EGG60678.1| chromosomal replication initiator protein DnaA [Staphylococcus epidermidis VCU144] Length = 451 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 91/233 (39%), Gaps = 28/233 (12%) Query: 40 RDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW-----SDKSRST 91 D ++ A + P+ + + G G GK+ L + S+K + Sbjct: 120 FDTFVIGPGNRFPHAASLAVAEAPAEAYNPLFIYGGVGLGKTHLMHAIGHHVLSNKPNAK 179 Query: 92 RFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINSI 133 ++ + I + + +L++DI + + + FH N + Sbjct: 180 VIYTSSEKFTNEFIKSIRDNETEAFREKYRKIDVLLIDDIQFIQNKEQTQEEFFHTFNEL 239 Query: 134 HQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 HQ + +++++ P L D L SR + +V I+ PD + ++ K + + Sbjct: 240 HQNNKQIVISSDRPPKEIA-KLEDRLRSRFEWGLIVDITPPDYETRMAILQKKIEEENLD 298 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 I + YI +++ ++ E + ++ + +G IT L AE LK+ Q Sbjct: 299 IPPEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPITTELTAEALKDIIQS 351 >gi|88860616|ref|ZP_01135253.1| DNA replication initiator protein [Pseudoalteromonas tunicata D2] gi|88817211|gb|EAR27029.1| DNA replication initiator protein [Pseudoalteromonas tunicata D2] Length = 460 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 92/234 (39%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLAN-----IWSD 86 + D + + + A P V + G +G GK+ L + I ++ Sbjct: 126 KETYTFDSFVEGKSNQLAKAAASQVADNPGTAFNPVFIYGGTGLGKTHLLHAVGNGILAN 185 Query: 87 KSRSTR--------FSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLFH 128 K + ++ ++L + I+ + +L++DI + + FH Sbjct: 186 KPNAKIAYMHSERFVQDMVRALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFH 245 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++ + + +++T+ +P L SR + I P+ + +++K Sbjct: 246 TFNALLEGNQQIILTSDRYPKEIEGVEDRLKSRFGWGLTIAIEPPELETRVAILMKKAQQ 305 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +I + +++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 306 SKIKLPEEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVKEALRDL 359 >gi|319778438|ref|YP_004129351.1| Chromosomal replication initiator protein DnaA [Taylorella equigenitalis MCE9] gi|317108462|gb|ADU91208.1| Chromosomal replication initiator protein DnaA [Taylorella equigenitalis MCE9] Length = 227 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 43/216 (19%), Positives = 88/216 (40%), Gaps = 14/216 (6%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVIL-VGPSGSGKSCLANIWSDKSRSTRF 93 ++ D+ ++ E+ V +I + +IL G SGKS L + +K F Sbjct: 13 KPSLTFDNFY-TNSNEELVEIIKN----KLPTLILIWGEEASGKSHLLSAMKEKFEGEFF 67 Query: 94 S-NIAKSLDSILIDTRKPVLLEDIDLLDFND-TQLFHIINSIHQYD-----SSLLMTART 146 S N S + + K ++DI+L LF++ + ++ +T+ Sbjct: 68 SSNTFPSTSADINTDLKKYFIDDINLFSNAQLDVLFYLFTKLQIAGLGDRDVNIAITSNC 127 Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206 P + DL +RL V +I D F K +++ + + +++ +++ Sbjct: 128 PPTQLKIR-EDLRNRLGWGLVYEIKRLPDSFARKALIERAKEMGWNLPEEVLSWLYSYYS 186 Query: 207 RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 R F L+D +D ++L+ IT V+++ Sbjct: 187 RDAKFLFNLIDNLDQISLTEKRTITIPFVKRVIEDM 222 >gi|227328545|ref|ZP_03832569.1| chromosomal replication initiation protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 465 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 91/235 (38%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + D+ + + + A P + L G +G GK+ L + I + Sbjct: 130 VNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIIA 189 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 190 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 249 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 250 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 309 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 310 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRSITIDFVREALRDL 364 >gi|262167100|ref|ZP_06034815.1| chromosomal replication initiator protein dnaA [Vibrio cholerae RC27] gi|262024486|gb|EEY43172.1| chromosomal replication initiator protein dnaA [Vibrio cholerae RC27] Length = 444 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 90/235 (38%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--- 87 ++ + + + A R + P + L G +G GK+ L + + Sbjct: 109 VNPKHKFNNFVEGKSNQLGLAAARQVSDNPGAAYNPLFLYGGTGLGKTHLLHAVGNAIVD 168 Query: 88 ----------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 ++ K+L + I+ + +L++DI + + F Sbjct: 169 NNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 228 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 229 HTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAE 288 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 D QI + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 289 DHQIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 343 >gi|332519668|ref|ZP_08396132.1| chromosomal replication initiator protein DnaA [Lacinutrix algicola 5H-3-7-4] gi|332044227|gb|EGI80421.1| chromosomal replication initiator protein DnaA [Lacinutrix algicola 5H-3-7-4] Length = 475 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 42/259 (16%), Positives = 93/259 (35%), Gaps = 37/259 (14%) Query: 10 FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPS-R 65 F +P + E QL + D+ L + A + + P S Sbjct: 125 FVIPGIRNV----KIESQL------NPSYNFDNFLEGDSNRLARSAGLAVSAKPGGTSFN 174 Query: 66 VVILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTR 108 +++ G G GK+ LA+ ++K ++ K+ + I Sbjct: 175 PLLIFGGVGLGKTHLAHAIGVDIKDKYPEKTVLYISAEKFTQQYIDSVKKNNRNDFIHFY 234 Query: 109 KPV---LLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 + + +++D+ L FHI N +HQ +++T+ PV L SR Sbjct: 235 QLIDVLVIDDVQFLSGKSGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSRF 294 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 K ++ PD + ++ + + + + Y+ + ++ ++ E + + Sbjct: 295 KWGLSAELQTPDFETRVSILKNKLYRDGVEMPEDIIEYVAKNIKSNIRELEGAIISLIAQ 354 Query: 223 ALSRGMGITRSLAAEVLKE 241 + I LA +V+++ Sbjct: 355 SSFNKKEINIELAKQVVEK 373 >gi|117617947|ref|YP_854527.1| chromosomal replication initiation protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|166201857|sp|A0KEC3|DNAA_AERHH RecName: Full=Chromosomal replication initiator protein DnaA gi|117559354|gb|ABK36302.1| chromosomal replication initiator protein DnaA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 456 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 36/235 (15%), Positives = 89/235 (37%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDK--- 87 + + ++ + + + A P + L G +G GK+ L + + Sbjct: 121 TNVNYTFENFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNAIKE 180 Query: 88 ----------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 ++ K+L + I+ + +L++DI + + F Sbjct: 181 RKQDAKVIYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 240 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + ++++ Sbjct: 241 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMRKAD 300 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + QI + ++A +I +R+ ++ E ++++ A G I E L++ Sbjct: 301 ENQIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAINIDFVREALRDL 355 >gi|15640044|ref|NP_062596.1| chromosomal replication initiation protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|147674057|ref|YP_001218400.1| chromosomal replication initiation protein [Vibrio cholerae O395] gi|153212955|ref|ZP_01948549.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae 1587] gi|153802489|ref|ZP_01957075.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae MZO-3] gi|153819845|ref|ZP_01972512.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae NCTC 8457] gi|153830821|ref|ZP_01983488.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae 623-39] gi|227080249|ref|YP_002808800.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae M66-2] gi|254225544|ref|ZP_04919153.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae V51] gi|254291127|ref|ZP_04961924.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae AM-19226] gi|254851577|ref|ZP_05240927.1| chromosomal replication initiation protein [Vibrio cholerae MO10] gi|297581954|ref|ZP_06943874.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae RC385] gi|298501197|ref|ZP_07010996.1| chromosomal replication initiator protein DnaA [Vibrio cholerae MAK 757] gi|9654403|gb|AAF93190.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae O1 biovar El Tor str. N16961] gi|124116181|gb|EAY35001.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae 1587] gi|124121959|gb|EAY40702.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae MZO-3] gi|125621864|gb|EAZ50189.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae V51] gi|126509606|gb|EAZ72200.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae NCTC 8457] gi|146315940|gb|ABQ20479.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae O395] gi|148873705|gb|EDL71840.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae 623-39] gi|150422972|gb|EDN14922.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae AM-19226] gi|227008137|gb|ACP04349.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae M66-2] gi|227011985|gb|ACP08195.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae O395] gi|254847282|gb|EET25696.1| chromosomal replication initiation protein [Vibrio cholerae MO10] gi|297533821|gb|EFH72662.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae RC385] gi|297540069|gb|EFH76131.1| chromosomal replication initiator protein DnaA [Vibrio cholerae MAK 757] Length = 472 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 90/235 (38%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--- 87 ++ + + + A R + P + L G +G GK+ L + + Sbjct: 137 VNPKHKFNNFVEGKSNQLGLAAARQVSDNPGAAYNPLFLYGGTGLGKTHLLHAVGNAIVD 196 Query: 88 ----------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 ++ K+L + I+ + +L++DI + + F Sbjct: 197 NNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 256 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 257 HTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAE 316 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 D QI + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 317 DHQIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 371 >gi|227113116|ref|ZP_03826772.1| chromosomal replication initiation protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 465 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 91/235 (38%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + D+ + + + A P + L G +G GK+ L + I + Sbjct: 130 VNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIIA 189 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 190 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 249 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 250 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 309 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 310 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRSITIDFVREALRDL 364 >gi|148982286|ref|ZP_01816693.1| chromosomal replication initiation protein [Vibrionales bacterium SWAT-3] gi|145960551|gb|EDK25908.1| chromosomal replication initiation protein [Vibrionales bacterium SWAT-3] Length = 465 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 88/235 (37%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK--- 87 ++ + + + + P + L G +G GK+ L + + Sbjct: 140 VNPKHKFNNFVEGKSNQLGLAAARQVADNPGAAYNPLFLYGGTGLGKTHLLHAVGNAIVD 199 Query: 88 ----------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 ++ K+L + I+ + +L++DI + + F Sbjct: 200 GKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 259 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 260 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAE 319 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 D QI + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 320 DHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 374 >gi|322830734|ref|YP_004210761.1| chromosomal replication initiator protein DnaA [Rahnella sp. Y9602] gi|321165935|gb|ADW71634.1| chromosomal replication initiator protein DnaA [Rahnella sp. Y9602] Length = 463 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + D+ + + + A P + L G +G GK+ L + I + Sbjct: 128 VNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 187 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K+ + ++ K+L + I+ + +L++DI + + F Sbjct: 188 RKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 247 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 248 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 307 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 308 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 362 >gi|212550358|ref|YP_002308675.1| chromosomal replication initiation protein DnaA [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548596|dbj|BAG83264.1| chromosomal replication initiation protein DnaA [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 455 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 82/229 (35%), Gaps = 26/229 (11%) Query: 42 DLLVHSAIEQAVRLIDSWPSWPSRVV---ILVGPSGSGKSCLANIWSDKSRSTRFSNIAK 98 + + A + P + + G G GK+ L + +K F Sbjct: 128 NFFESDNNKVAYVIAQKVAQEPGKDFNPYFIYGGPGVGKTHLCHAIGNKVTEFHFQKRVI 187 Query: 99 SLDSILID--------------------TRKPVLLEDIDLLDFNDTQL---FHIINSIHQ 135 + + L ++L+DI L + L FHI N +HQ Sbjct: 188 YIPAHLFQIQYTDSIRKHEPNEFIHFYQGIDILILDDIHELSGKEKTLQAYFHIFNHLHQ 247 Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195 +++TA P L SRLK +++ PD + +K++ R++ + + Sbjct: 248 LGRQIILTADKIPAEIIGLEERLTSRLKWGLTIELQKPDLELRKKILNYRIRQRRLSVPE 307 Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 ++ YI + + + E +V + +L I A +++ + + Sbjct: 308 EVIDYIAENVPENARDLEGIVTSLIAYSLVDNCEINLESAQKIVGKIVR 356 >gi|261819371|ref|YP_003257477.1| chromosomal replication initiation protein [Pectobacterium wasabiae WPP163] gi|261603384|gb|ACX85870.1| chromosomal replication initiator protein DnaA [Pectobacterium wasabiae WPP163] Length = 465 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 91/235 (38%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + D+ + + + A P + L G +G GK+ L + I + Sbjct: 130 VNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIIA 189 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 190 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 249 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 250 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 309 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 310 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRSITIDFVREALRDL 364 >gi|327482925|gb|AEA77332.1| Chromosomal replication initiator protein DnaA [Vibrio cholerae LMA3894-4] Length = 458 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 90/235 (38%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--- 87 ++ + + + A R + P + L G +G GK+ L + + Sbjct: 123 VNPKHKFNNFVEGKSNQLGLAAARQVSDNPGAAYNPLFLYGGTGLGKTHLLHAVGNAIVD 182 Query: 88 ----------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 ++ K+L + I+ + +L++DI + + F Sbjct: 183 NNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 242 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 243 HTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAE 302 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 D QI + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 303 DHQIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 357 >gi|168187277|ref|ZP_02621912.1| chromosomal replication initiator protein DnaA [Clostridium botulinum C str. Eklund] gi|169294801|gb|EDS76934.1| chromosomal replication initiator protein DnaA [Clostridium botulinum C str. Eklund] Length = 449 Score = 122 bits (307), Expect = 5e-26, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 90/233 (38%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLAN-----IWSD 86 + D ++ ++ A + P+ + + G G GK+ L + I + Sbjct: 113 NPKYTFDSFVIGNSNRFAHAASLAVAESPAKAYNPLFIYGGVGLGKTHLMHAIGHYILQN 172 Query: 87 KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 + ++ + LI++ K +L++DI + + + FH Sbjct: 173 TPNAKVVYVSSEKFTNELINSIKDDKNEEFRNKYRNVDVLLIDDIQFIAGKERTQEEFFH 232 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++++ D +++++ P L SR + + I PD + ++ K Sbjct: 233 TFNALYEADKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDFETRIAILKKKADV 292 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I ++ YI +++ ++ E + ++ + I+ LAAE LK+ Sbjct: 293 ENLDIPNEVMVYIATKIKSNIRELEGALIRIVAYSSLTNREISVDLAAEALKD 345 >gi|118444635|ref|YP_879298.1| chromosomal replication initiation protein [Clostridium novyi NT] gi|166201879|sp|A0Q3U6|DNAA_CLONN RecName: Full=Chromosomal replication initiator protein DnaA gi|118135091|gb|ABK62135.1| chromosomal replication initiator protein DnaA [Clostridium novyi NT] Length = 448 Score = 122 bits (307), Expect = 5e-26, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 90/233 (38%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLAN-----IWSD 86 + D ++ ++ A + P+ + + G G GK+ L + I + Sbjct: 112 NPKYTFDSFVIGNSNRFAHAASLAVAESPAKAYNPLFIYGGVGLGKTHLMHAIGHYILQN 171 Query: 87 KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 + ++ + LI++ K +L++DI + + + FH Sbjct: 172 TPNAKVVYVSSEKFTNELINSIKDDKNEEFRNKYRNVDVLLIDDIQFIAGKERTQEEFFH 231 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++++ D +++++ P L SR + + I PD + ++ K Sbjct: 232 TFNALYEADKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDFETRIAILKKKADV 291 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I ++ YI +++ ++ E + ++ + I+ LAAE LK+ Sbjct: 292 ENLDIPNEVMVYIATKIKSNIRELEGALIRIVAYSSLTNREISVDLAAEALKD 344 >gi|253686410|ref|YP_003015600.1| chromosomal replication initiator protein DnaA [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259645256|sp|C6DGH7|DNAA_PECCP RecName: Full=Chromosomal replication initiator protein DnaA gi|251752988|gb|ACT11064.1| chromosomal replication initiator protein DnaA [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 465 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 91/235 (38%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + D+ + + + A P + L G +G GK+ L + I + Sbjct: 130 VNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIIA 189 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 190 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 249 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 250 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 309 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 310 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRSITIDFVREALRDL 364 >gi|255746805|ref|ZP_05420751.1| chromosomal replication initiator protein dnaA [Vibrio cholera CIRS 101] gi|262155885|ref|ZP_06029007.1| chromosomal replication initiator protein dnaA [Vibrio cholerae INDRE 91/1] gi|262172778|ref|ZP_06040456.1| chromosomal replication initiator protein dnaA [Vibrio mimicus MB-451] gi|262402082|ref|ZP_06078646.1| chromosomal replication initiator protein dnaA [Vibrio sp. RC586] gi|255735562|gb|EET90961.1| chromosomal replication initiator protein dnaA [Vibrio cholera CIRS 101] gi|261893854|gb|EEY39840.1| chromosomal replication initiator protein dnaA [Vibrio mimicus MB-451] gi|262030337|gb|EEY48979.1| chromosomal replication initiator protein dnaA [Vibrio cholerae INDRE 91/1] gi|262351728|gb|EEZ00860.1| chromosomal replication initiator protein dnaA [Vibrio sp. RC586] Length = 458 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 90/235 (38%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--- 87 ++ + + + A R + P + L G +G GK+ L + + Sbjct: 123 VNPKHKFNNFVEGKSNQLGLAAARQVSDNPGAAYNPLFLYGGTGLGKTHLLHAVGNAIVD 182 Query: 88 ----------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 ++ K+L + I+ + +L++DI + + F Sbjct: 183 NNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 242 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 243 HTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAE 302 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 D QI + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 303 DHQIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 357 >gi|300719141|ref|YP_003743944.1| Chromosomal replication initiator protein [Erwinia billingiae Eb661] gi|299064977|emb|CAX62097.1| Chromosomal replication initiator protein [Erwinia billingiae Eb661] Length = 463 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 41/244 (16%), Positives = 94/244 (38%), Gaps = 26/244 (10%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLA 81 +L + + D+ + + + A P + L G +G GK+ L Sbjct: 119 PAELSYRSNVNTKHNFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLL 178 Query: 82 N-----IWSDKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDF 121 + I + K + ++ K+L + I+ + +L++DI Sbjct: 179 HAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFAN 238 Query: 122 ND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178 + + FH N++ + + +++T+ +P L SR V I P+ + Sbjct: 239 KERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETR 298 Query: 179 EKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238 +++K + I + ++A +I +R+ ++ E ++++ A G IT E Sbjct: 299 VAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREA 358 Query: 239 LKET 242 L++ Sbjct: 359 LRDL 362 >gi|330447269|ref|ZP_08310919.1| chromosomal replication initiator protein DnaA [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491460|dbj|GAA05416.1| chromosomal replication initiator protein DnaA [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 450 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 40/250 (16%), Positives = 96/250 (38%), Gaps = 26/250 (10%) Query: 19 DQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGS 75 + + +Q + + ++ + + + + P + L G +G Sbjct: 100 SPVQPEAQQGGYRSNVNPKHNFNNFVEGKSNQLGLAACRQVADNPGAAYNPLFLYGGTGL 159 Query: 76 GKSCLAN-----IWSDKSRS--------TRFSNIAKSLDSILID-------TRKPVLLED 115 GK+ L + I + K + ++ K+L + I+ + +L++D Sbjct: 160 GKTHLLHAVGNAIANRKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDD 219 Query: 116 IDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 I + + FH N++ + + +++T+ +P L SR V I Sbjct: 220 IQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPREINGVEDRLKSRFGWGLTVAIEP 279 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232 P+ + +++K D I + ++A +I +R+ ++ E ++++ A G IT Sbjct: 280 PELETRVAILMKKAEDHNIRLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITI 339 Query: 233 SLAAEVLKET 242 E L++ Sbjct: 340 DFVREALRDL 349 >gi|289577266|ref|YP_003475893.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter italicus Ab9] gi|297543499|ref|YP_003675801.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289526979|gb|ADD01331.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter italicus Ab9] gi|296841274|gb|ADH59790.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 443 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 36/233 (15%), Positives = 92/233 (39%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD----- 86 + D +V ++ + A + P++ + + G G GK+ L + Sbjct: 109 NPKYTFDTFVVGNSNKLAHAACLAVAQAPAKAYNPLFIYGGVGLGKTHLMHAIGHFINKH 168 Query: 87 KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 +S +++ + L+++ K +L++DI + + + FH Sbjct: 169 QSGYKIMYVTSETFTNELVNSIKDDKNEEFRNKYRNIDVLLIDDIQFIAKKERTQEEFFH 228 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++++ + +++++ P L SR + + I PD + ++ K Sbjct: 229 TFNTLYEANKQIVISSDRPPKEIPTLEERLRSRFEWGLIADIQPPDYETRIAILKKKAQT 288 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I ++ AY+ ++++ ++ E + ++ + I LA + LKE Sbjct: 289 ENLNIPDEVLAYVAEKIQSNIRELEGALIRIVAFSNLTKANIDLELAKQALKE 341 >gi|229508297|ref|ZP_04397801.1| chromosomal replication initiator protein dnaA [Vibrio cholerae BX 330286] gi|229508864|ref|ZP_04398355.1| chromosomal replication initiator protein dnaA [Vibrio cholerae B33] gi|229515949|ref|ZP_04405406.1| chromosomal replication initiator protein dnaA [Vibrio cholerae TMA 21] gi|229517135|ref|ZP_04406581.1| chromosomal replication initiator protein dnaA [Vibrio cholerae RC9] gi|229520184|ref|ZP_04409611.1| chromosomal replication initiator protein dnaA [Vibrio cholerae TM 11079-80] gi|229530202|ref|ZP_04419591.1| chromosomal replication initiator protein dnaA [Vibrio cholerae 12129(1)] gi|229606571|ref|YP_002877219.1| chromosomal replication initiation protein [Vibrio cholerae MJ-1236] gi|258622958|ref|ZP_05717973.1| chromosomal replication initiation protein [Vibrio mimicus VM573] gi|258626082|ref|ZP_05720933.1| chromosomal replication initiation protein [Vibrio mimicus VM603] gi|31340536|sp|Q9KVX6|DNAA_VIBCH RecName: Full=Chromosomal replication initiator protein DnaA gi|229332335|gb|EEN97822.1| chromosomal replication initiator protein dnaA [Vibrio cholerae 12129(1)] gi|229342778|gb|EEO07769.1| chromosomal replication initiator protein dnaA [Vibrio cholerae TM 11079-80] gi|229346198|gb|EEO11170.1| chromosomal replication initiator protein dnaA [Vibrio cholerae RC9] gi|229347049|gb|EEO12011.1| chromosomal replication initiator protein dnaA [Vibrio cholerae TMA 21] gi|229354139|gb|EEO19071.1| chromosomal replication initiator protein dnaA [Vibrio cholerae B33] gi|229354570|gb|EEO19492.1| chromosomal replication initiator protein dnaA [Vibrio cholerae BX 330286] gi|229369226|gb|ACQ59649.1| chromosomal replication initiator protein dnaA [Vibrio cholerae MJ-1236] gi|258581608|gb|EEW06506.1| chromosomal replication initiation protein [Vibrio mimicus VM603] gi|258584741|gb|EEW09475.1| chromosomal replication initiation protein [Vibrio mimicus VM573] Length = 467 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 90/235 (38%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--- 87 ++ + + + A R + P + L G +G GK+ L + + Sbjct: 132 VNPKHKFNNFVEGKSNQLGLAAARQVSDNPGAAYNPLFLYGGTGLGKTHLLHAVGNAIVD 191 Query: 88 ----------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 ++ K+L + I+ + +L++DI + + F Sbjct: 192 NNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 251 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 252 HTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAE 311 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 D QI + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 312 DHQIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 366 >gi|262278142|ref|ZP_06055927.1| DnaA family protein [Acinetobacter calcoaceticus RUH2202] gi|262258493|gb|EEY77226.1| DnaA family protein [Acinetobacter calcoaceticus RUH2202] Length = 232 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 86/228 (37%), Gaps = 21/228 (9%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 QL L D + V + + + G +G+GKS L + Sbjct: 2 RQLQLDIEPQLDARISDF-SGPSWGNVVDAVRQLHAGLVSRFYIYGGAGTGKSHLLSAIC 60 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVL-LEDIDLLDFNDT-----------QLFHIINSI 133 D S I SL +L + + LE DL+ +D +FH++N Sbjct: 61 DSYLEIGKSAIKVSLLELLDAPIEAITSLEHYDLVALDDIESISGVPHWQKAVFHLMN-- 118 Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF---LEKVIVKMFADRQ 190 ++ L+ ++R P+ + LPDL SRL A VK+ P ++ + + R Sbjct: 119 -NHEGQLVFSSRVAPIELKLELPDLQSRLTQAVSVKV--PSGSLYADRYALVTSVMSRRG 175 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238 I D+++ Y++ + V +++ L ++ + ++ Sbjct: 176 IHFDQQIVDYLLLHGPHQASLLLQTVAQLEKLLKGEKTKLSNATLRQI 223 >gi|110803386|ref|YP_697352.1| chromosomal replication initiation protein [Clostridium perfringens SM101] gi|123047633|sp|Q0SWX6|DNAA_CLOPS RecName: Full=Chromosomal replication initiator protein DnaA gi|110683887|gb|ABG87257.1| chromosomal replication initiator protein DnaA [Clostridium perfringens SM101] Length = 457 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 33/233 (14%), Positives = 87/233 (37%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW------- 84 + ++ ++ A + P+ + + G G GK+ L + Sbjct: 121 NPKYTFQSFVIGNSNRFAHAASLAVAESPAKAYNPLFIYGGVGLGKTHLMHAIGHYILQE 180 Query: 85 ----------SDKSRSTRFSNIAKSLDSILIDTRK---PVLLEDIDLLDFND---TQLFH 128 S+K + + I + + + +L++DI + + + FH Sbjct: 181 NPKAKVVYVSSEKFTNELINAIKDDKNEEFRNKYRKVDVLLIDDIQFIAGKERTQEEFFH 240 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H+ + +++++ P L SR + + I PD + ++ K Sbjct: 241 TFNALHEENKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQPPDFETRMAILKKKADV 300 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + + ++ YI +++ ++ E + ++ + ++ LA+E LK+ Sbjct: 301 EGLSVPNEVMVYIATKIKSNIRELEGALIRIIAYSSLTNRDVSVDLASEALKD 353 >gi|86147175|ref|ZP_01065491.1| chromosomal replication initiation protein [Vibrio sp. MED222] gi|218708098|ref|YP_002415719.1| chromosomal replication initiation protein [Vibrio splendidus LGP32] gi|254777922|sp|B7VGI4|DNAA_VIBSL RecName: Full=Chromosomal replication initiator protein DnaA gi|85835059|gb|EAQ53201.1| chromosomal replication initiation protein [Vibrio sp. MED222] gi|218321117|emb|CAV17067.1| Chromosomal replication initiator protein dnaA [Vibrio splendidus LGP32] Length = 473 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 38/242 (15%), Positives = 88/242 (36%), Gaps = 30/242 (12%) Query: 31 SFPRC----LGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANI 83 ++ + + + + P + L G +G GK+ L + Sbjct: 131 DLNHRSNVNPKHKFNNFVEGKSNQLGLAAARQVSDNPGTAYNPLFLYGGTGLGKTHLLHA 190 Query: 84 WSDK-------------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND 123 + ++ K+L + I+ + +L++DI + Sbjct: 191 VGNAIVDNKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKE 250 Query: 124 ---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 + FH N++ + + +++T+ +P L SR V I P+ + Sbjct: 251 RSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVA 310 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 +++K D QI + ++A +I +R+ ++ E ++++ A G IT E L+ Sbjct: 311 ILMKKAEDHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALR 370 Query: 241 ET 242 + Sbjct: 371 DL 372 >gi|326390364|ref|ZP_08211923.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter ethanolicus JW 200] gi|325993641|gb|EGD52074.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter ethanolicus JW 200] Length = 443 Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats. Identities = 36/233 (15%), Positives = 91/233 (39%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD----- 86 + D +V ++ + A + P++ + + G G GK+ L + Sbjct: 109 NPKYTFDTFVVGNSNKLAHAACLAVAQAPAKAYNPLFIYGGVGLGKTHLMHAIGHFINKH 168 Query: 87 KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 +S +++ + L+++ K +L++DI + + + FH Sbjct: 169 QSGYKIMYVTSETFTNELVNSIKDDKNEEFRNKYRNIDVLLIDDIQFIAKKERTQEEFFH 228 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++++ + +++++ P L SR + + I PD + ++ K Sbjct: 229 TFNTLYEANKQIVISSDRPPKEIPTLEERLRSRFEWGLIADIQPPDYETRIAILKKKAQS 288 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I ++ AY+ ++++ ++ E + ++ + I LA LKE Sbjct: 289 ENLNIPDEVLAYVAEKIQSNIRELEGALIRIVAFSNLTKSNIDLELAKHALKE 341 >gi|325265442|ref|ZP_08132165.1| DNA replication initiator protein, ATPase [Clostridium sp. D5] gi|324029300|gb|EGB90592.1| DNA replication initiator protein, ATPase [Clostridium sp. D5] Length = 456 Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats. Identities = 50/281 (17%), Positives = 102/281 (36%), Gaps = 36/281 (12%) Query: 1 MNLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRL---ID 57 ++ + ED + + +K++N K LF + + D +V S A + Sbjct: 78 ISFVTED-NVIIQEKKENVIKNKKSNALFENANLNAKYTFDTFVVGSNNNFAHAASLAVA 136 Query: 58 SWPSWPSRVVILVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDT----- 107 P + + G G GK+ L + I + +++ + LID+ Sbjct: 137 ESPGEIYNPLFIYGGVGLGKTHLMHSVAHFILENDPSKKVLYVTSETFTNELIDSLKIGK 196 Query: 108 ----------------RKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFP 148 +L++DI + + + FH N +H +++++ P Sbjct: 197 NGNELAMTTFREKYRNNDVLLIDDIQFIIGKESTQEEFFHTFNHLHVSGKQIIISSDKPP 256 Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI---FIDKKLAAYIVQRM 205 L +R + + IS PD + ++ K + I ++ YI + Sbjct: 257 KDIETLEARLRTRFEWGLIADISSPDYETRMAILRKKEELDGLERYHIPDEVLQYIANNI 316 Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + ++ E ++K+ L+ I LAAE LK+ D Sbjct: 317 KSNIRELEGSLNKLIALSNLEKKPIDIPLAAEALKDMISPD 357 >gi|144149|gb|AAA73149.1| dnaA [Buchnera aphidicola] Length = 431 Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats. Identities = 35/229 (15%), Positives = 85/229 (37%), Gaps = 26/229 (11%) Query: 39 SRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRFS- 94 S ++ + + + A P + L G +G GK+ L + + + +++ Sbjct: 101 SFENFIEGKSNQLARAAASQVAKNPGNSYNPLFLYGGTGLGKTHLLHAIGNGILAYKYNV 160 Query: 95 -------------------NIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLFHIINS 132 N A + + +L++DI + + FH N+ Sbjct: 161 KIIYMHSERFVQDMVKALQNNAIEKFKLYYRSVDALLIDDIQFFAHKERSQEEFFHTFNA 220 Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 + + + +++T+ +P L SR V I P+ + +++K + I Sbjct: 221 LLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIDPPELETRVAILIKKADENNIV 280 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + ++A +I + + ++ E ++++ A IT E L++ Sbjct: 281 LSDEVAFFIAKHLRSNVRELEGALNRVIVNANFTHRSITVEFVREALRD 329 >gi|21672306|ref|NP_660373.1| chromosomal replication initiator protein [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|231998|sp|P29434|DNAA_BUCAP RecName: Full=Chromosomal replication initiator protein DnaA gi|2827014|gb|AAC38106.1| DNA biosynthesis initiating protein [Buchnera aphidicola] gi|21622905|gb|AAM67584.1| chromosomal replication initiator protein [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 454 Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats. Identities = 35/229 (15%), Positives = 85/229 (37%), Gaps = 26/229 (11%) Query: 39 SRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRFS- 94 S ++ + + + A P + L G +G GK+ L + + + +++ Sbjct: 124 SFENFIEGKSNQLARAAASQVAKNPGNSYNPLFLYGGTGLGKTHLLHAIGNGILAYKYNV 183 Query: 95 -------------------NIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLFHIINS 132 N A + + +L++DI + + FH N+ Sbjct: 184 KIIYMHSERFVQDMVKALQNNAIEKFKLYYRSVDALLIDDIQFFAHKERSQEEFFHTFNA 243 Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 + + + +++T+ +P L SR V I P+ + +++K + I Sbjct: 244 LLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIDPPELETRVAILIKKADENNIV 303 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + ++A +I + + ++ E ++++ A IT E L++ Sbjct: 304 LSDEVAFFIAKHLRSNVRELEGALNRVIVNANFTHRSITVEFVREALRD 352 >gi|242237461|ref|YP_002985642.1| chromosomal replication initiator protein DnaA [Dickeya dadantii Ech703] gi|242129518|gb|ACS83820.1| chromosomal replication initiator protein DnaA [Dickeya dadantii Ech703] Length = 462 Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 91/235 (38%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + D+ + + + A P + L G +G GK+ L + I + Sbjct: 127 VNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 186 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 187 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 246 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 247 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 306 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 307 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 361 >gi|305667262|ref|YP_003863549.1| chromosomal replication initiation protein [Maribacter sp. HTCC2170] gi|88709309|gb|EAR01542.1| chromosomal replication initiation protein [Maribacter sp. HTCC2170] Length = 474 Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats. Identities = 41/259 (15%), Positives = 92/259 (35%), Gaps = 37/259 (14%) Query: 10 FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66 F +P + E QL + D+ L + A + + P Sbjct: 125 FVIPGIRNI----KIESQL------NPNYNFDNFLEGDSNRLARSAGMAVANKPGGTSFN 174 Query: 67 -VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTR 108 +++ G G GK+ LA+ ++K ++ K+ + I Sbjct: 175 PLLIFGGVGLGKTHLAHAIGVEIKDKYPERTVLYISAEKFTQQYIESVKKNTRNDFIHFY 234 Query: 109 KPV---LLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 + + +++D+ L FHI N +HQ +++T+ PV L SR Sbjct: 235 QLIDVLIIDDVQFLSGKSGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSRF 294 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 K ++ PD + ++ + + + Y+ + ++ ++ E + + Sbjct: 295 KWGLSAELQNPDYETRISILKNKLYRDGVEMPNDIVDYVAKHIKTNIRELEGAIISLIAQ 354 Query: 223 ALSRGMGITRSLAAEVLKE 241 + +T LA +V+++ Sbjct: 355 SSFNKKEVTIELAQQVVEK 373 >gi|254520696|ref|ZP_05132752.1| chromosomal replication initiator protein DnaA [Clostridium sp. 7_2_43FAA] gi|226914445|gb|EEH99646.1| chromosomal replication initiator protein DnaA [Clostridium sp. 7_2_43FAA] Length = 451 Score = 121 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 35/233 (15%), Positives = 88/233 (37%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW-----SD 86 + ++ ++ A + P+ + + G G GK+ L + + Sbjct: 115 NPKYTFASFVIGNSNRFAHAASLAVAESPAKAYNPLFIYGGVGLGKTHLMHAIGHYVLQN 174 Query: 87 KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 S + ++ + LI+ + +L++DI + + + FH Sbjct: 175 NSNAKVVYVSSEKFTNELINAIRDDKNEEFRNKYRNVDILLIDDIQFIAGKERTQEEFFH 234 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H + +++++ P L SR + + I PD + ++ K Sbjct: 235 TFNALHDANKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDFETRMAILKKKADV 294 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++ + ++ YI +++ ++ E + ++ + IT LA+E LK+ Sbjct: 295 EKLNVANEVMVYIATKIKSNIRELEGALIRIVAYSSLTNRPITVELASEALKD 347 >gi|229524913|ref|ZP_04414318.1| chromosomal replication initiator protein dnaA [Vibrio cholerae bv. albensis VL426] gi|229338494|gb|EEO03511.1| chromosomal replication initiator protein dnaA [Vibrio cholerae bv. albensis VL426] Length = 467 Score = 121 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 90/235 (38%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--- 87 ++ + + + A R + P + L G +G GK+ L + + Sbjct: 132 VNPKHKFNNFVEGKSNQLGLAAARQVSDNPGAAYNPLFLYGGTGLGKTHLLHAVGNAIVD 191 Query: 88 ----------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 ++ K+L + I+ + +L++DI + + F Sbjct: 192 NNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 251 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 252 HTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAE 311 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 D QI + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 312 DHQIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 366 >gi|294638327|ref|ZP_06716580.1| DNA biosynthesis protein [Edwardsiella tarda ATCC 23685] gi|291088580|gb|EFE21141.1| DNA biosynthesis protein [Edwardsiella tarda ATCC 23685] Length = 467 Score = 121 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 44/263 (16%), Positives = 97/263 (36%), Gaps = 33/263 (12%) Query: 13 PDKQKNDQPKNK-----EEQ--LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSR 65 P + P Q L + + D+ + + + A P Sbjct: 104 PTSVRATSPTRPSWERVAAQPELSYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGG 163 Query: 66 V---VILVGPSGSGKSCLAN-----IWSDKSRS--------TRFSNIAKSLDSILID--- 106 + L G +G GK+ L + I + K + ++ K+L + I+ Sbjct: 164 AYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFK 223 Query: 107 ----TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC 159 + +L++DI + + FH N++ + + +++T+ +P L Sbjct: 224 RYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLK 283 Query: 160 SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 SR V I P+ + +++K + I + ++A +I +R+ ++ E ++++ Sbjct: 284 SRFGWGLTVAIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRV 343 Query: 220 DNLALSRGMGITRSLAAEVLKET 242 A G IT E L++ Sbjct: 344 IANANFTGRAITIDFVREALRDL 366 >gi|296100372|ref|YP_003610518.1| chromosomal replication initiator protein [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295054831|gb|ADF59569.1| chromosomal replication initiator protein [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 442 Score = 121 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + + D+ + + + A P + L G +G GK+ L + I + Sbjct: 107 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 166 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 167 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 226 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 227 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 286 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 287 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 341 >gi|157373147|ref|YP_001471747.1| chromosomal replication initiation protein [Shewanella sediminis HAW-EB3] gi|189083280|sp|A8FP46|DNAA_SHESH RecName: Full=Chromosomal replication initiator protein DnaA gi|157315521|gb|ABV34619.1| chromosomal replication initiator protein DnaA [Shewanella sediminis HAW-EB3] Length = 462 Score = 121 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 90/232 (38%), Gaps = 28/232 (12%) Query: 38 ISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN-----IWSDKS 88 ++ + + A+++ ++ P + L G +G GK+ L + I + Sbjct: 131 YQFENFVEGKSNQLGKAAAMQVAEN-PGGAYNPLFLYGGTGLGKTHLLHAVGNGIIKNNP 189 Query: 89 RSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFHII 130 + ++ ++ + +E+ +D L +D + FH Sbjct: 190 NAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQFFANKDRSQEEFFHTF 249 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N++ + + +++T+ +P L SR V I P+ + ++++ + Sbjct: 250 NALLEGNHQIILTSDKYPKEIDGVEDRLKSRFGWGLTVAIEPPELETRVAILMRKAQESG 309 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 310 INLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 361 >gi|168207736|ref|ZP_02633741.1| chromosomal replication initiator protein DnaA [Clostridium perfringens E str. JGS1987] gi|170660929|gb|EDT13612.1| chromosomal replication initiator protein DnaA [Clostridium perfringens E str. JGS1987] Length = 457 Score = 121 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 33/233 (14%), Positives = 87/233 (37%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW------- 84 + ++ ++ A + P+ + + G G GK+ L + Sbjct: 121 NPKYTFQSFVIGNSNRFAHAASLAVAESPAKAYNPLFIYGGVGLGKTHLMHAIGHYILQE 180 Query: 85 ----------SDKSRSTRFSNIAKSLDSILIDTRK---PVLLEDIDLLDFND---TQLFH 128 S+K + + I + + + +L++DI + + + FH Sbjct: 181 NPKAKVVYVSSEKFTNELINAIKDDKNEEFRNKYRKVDVLLIDDIQFIAGKERTQEEFFH 240 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H+ + +++++ P L SR + + I PD + ++ K Sbjct: 241 TFNALHEENKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQPPDFETRMAILKKKADV 300 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + + ++ YI +++ ++ E + ++ + ++ LA+E LK+ Sbjct: 301 EGLNVPNEVMVYIATKIKSNIRELEGALIRIIAYSSLTNRDVSVDLASEALKD 353 >gi|18308983|ref|NP_560917.1| chromosomal replication initiation protein [Clostridium perfringens str. 13] gi|110799791|ref|YP_694476.1| chromosomal replication initiation protein [Clostridium perfringens ATCC 13124] gi|168218306|ref|ZP_02643931.1| chromosomal replication initiator protein DnaA [Clostridium perfringens NCTC 8239] gi|169343457|ref|ZP_02864457.1| chromosomal replication initiator protein DnaA [Clostridium perfringens C str. JGS1495] gi|182627054|ref|ZP_02954779.1| chromosomal replication initiator protein DnaA [Clostridium perfringens D str. JGS1721] gi|38257694|sp|Q8XPG2|DNAA_CLOPE RecName: Full=Chromosomal replication initiator protein DnaA gi|123149082|sp|Q0TV64|DNAA_CLOP1 RecName: Full=Chromosomal replication initiator protein DnaA gi|18143658|dbj|BAB79707.1| chromosomal replication initiator protein [Clostridium perfringens str. 13] gi|110674438|gb|ABG83425.1| chromosomal replication initiator protein DnaA [Clostridium perfringens ATCC 13124] gi|169298409|gb|EDS80498.1| chromosomal replication initiator protein DnaA [Clostridium perfringens C str. JGS1495] gi|177907580|gb|EDT70219.1| chromosomal replication initiator protein DnaA [Clostridium perfringens D str. JGS1721] gi|182379693|gb|EDT77172.1| chromosomal replication initiator protein DnaA [Clostridium perfringens NCTC 8239] Length = 457 Score = 121 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 33/233 (14%), Positives = 87/233 (37%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW------- 84 + ++ ++ A + P+ + + G G GK+ L + Sbjct: 121 NPKYTFQSFVIGNSNRFAHAASLAVAESPAKAYNPLFIYGGVGLGKTHLMHAIGHYILQE 180 Query: 85 ----------SDKSRSTRFSNIAKSLDSILIDTRK---PVLLEDIDLLDFND---TQLFH 128 S+K + + I + + + +L++DI + + + FH Sbjct: 181 NPKAKVVYVSSEKFTNELINAIKDDKNEEFRNKYRKVDVLLIDDIQFIAGKERTQEEFFH 240 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H+ + +++++ P L SR + + I PD + ++ K Sbjct: 241 TFNALHEENKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQPPDFETRMAILKKKADV 300 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + + ++ YI +++ ++ E + ++ + ++ LA+E LK+ Sbjct: 301 EGLNVPNEVMVYIATKIKSNIRELEGALIRIIAYSSLTNRDVSVDLASEALKD 353 >gi|170717207|ref|YP_001783356.1| chromosomal replication initiation protein [Haemophilus somnus 2336] gi|168825336|gb|ACA30707.1| chromosomal replication initiator protein DnaA [Haemophilus somnus 2336] Length = 455 Score = 121 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 87/230 (37%), Gaps = 27/230 (11%) Query: 40 RDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLAN-----IWSDKSRS 90 D+ + + + A + P + L G +G GK+ L + I ++ + Sbjct: 125 FDNFVEGKSNQLARAVAQKVAKNPGEQSANPLFLYGGTGLGKTHLLHAVGNGILANNPHA 184 Query: 91 TRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINS 132 A+ + K +L++DI D + FHI NS Sbjct: 185 QVVYMHAERFMQSYVKALKSDRMDSFKRFYRTVDALLIDDIQFFAGKDGTQEEFFHIFNS 244 Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 + + +++T+ +P L SR V I P+ + +++K ++ + Sbjct: 245 LFERGRQIILTSDRYPKEIEKIEDRLKSRFGWGISVAIEPPELETRVAILLKKAEEKNMV 304 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + +++A +I ++ ++ E ++++ A G IT E LK+ Sbjct: 305 LPEEVAMFIGGKLRTNVRELEGALNRVHAHAEFTGKAITIDFVRETLKDM 354 >gi|113460282|ref|YP_718341.1| chromosomal replication initiation protein [Haemophilus somnus 129PT] gi|123031085|sp|Q0I0Y7|DNAA_HAES1 RecName: Full=Chromosomal replication initiator protein DnaA gi|112822325|gb|ABI24414.1| chromosomal replication initiator protein DnaA [Haemophilus somnus 129PT] Length = 452 Score = 121 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 87/230 (37%), Gaps = 27/230 (11%) Query: 40 RDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLAN-----IWSDKSRS 90 D+ + + + A + P + L G +G GK+ L + I ++ + Sbjct: 122 FDNFVEGKSNQLARAVAQKVAKNPGEQSANPLFLYGGTGLGKTHLLHAVGNGILANNPHA 181 Query: 91 TRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINS 132 A+ + K +L++DI D + FHI NS Sbjct: 182 QVVYMHAERFMQSYVKALKSDRMDSFKRFYRTVDALLIDDIQFFAGKDGTQEEFFHIFNS 241 Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 + + +++T+ +P L SR V I P+ + +++K ++ + Sbjct: 242 LFERGRQIILTSDRYPKEIEKIEDRLKSRFGWGISVAIEPPELETRVAILLKKAEEKNMV 301 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + +++A +I ++ ++ E ++++ A G IT E LK+ Sbjct: 302 LPEEVAMFIGGKLRTNVRELEGALNRVHAHAEFTGKAITIDFVRETLKDM 351 >gi|332304387|ref|YP_004432238.1| chromosomal replication initiator protein DnaA [Glaciecola agarilytica 4H-3-7+YE-5] gi|332171716|gb|AEE20970.1| chromosomal replication initiator protein DnaA [Glaciecola agarilytica 4H-3-7+YE-5] Length = 476 Score = 121 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 94/231 (40%), Gaps = 26/231 (11%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSDKSR 89 D+ + + + A P + + + G +G GK+ L + I +K+ Sbjct: 145 YKFDNFVEGKSNQLARAASKQVSDNPGKAYNPLFIYGGTGLGKTHLLHAVGNGIIDNKND 204 Query: 90 STRF--------SNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLFHIIN 131 +T ++ K+L + I+ + +L++DI + + FH N Sbjct: 205 ATVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFN 264 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 ++ + + +++T+ +P L SR + I P+ + ++++ + +I Sbjct: 265 ALLEGNQQIILTSDRYPKEIDGVEDRLKSRFGWGLTIAIEPPELETRVAILMRKALENKI 324 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 325 ILPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 375 >gi|269962691|ref|ZP_06177036.1| chromosomal replication initiation protein [Vibrio harveyi 1DA3] gi|269832614|gb|EEZ86728.1| chromosomal replication initiation protein [Vibrio harveyi 1DA3] Length = 468 Score = 121 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 90/235 (38%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--- 87 ++ + + + A R + P + L G +G GK+ L + + Sbjct: 133 VNPKHKFNNFVEGKSNQLGLAAARQVSDNPGAAYNPLFLYGGTGLGKTHLLHAVGNAIVD 192 Query: 88 ----------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 ++ K+L + I+ + +L++DI + + F Sbjct: 193 NKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 252 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 253 HTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAE 312 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 D QI + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 313 DHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 367 >gi|84394505|ref|ZP_00993215.1| chromosomal replication initiation protein [Vibrio splendidus 12B01] gi|84374858|gb|EAP91795.1| chromosomal replication initiation protein [Vibrio splendidus 12B01] Length = 414 Score = 121 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 38/242 (15%), Positives = 88/242 (36%), Gaps = 30/242 (12%) Query: 31 SFPRC----LGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANI 83 ++ + + + + P + L G +G GK+ L + Sbjct: 131 DLNHRSNVNPKHKFNNFVEGKSNQLGLAAARQVSDNPGTAYNPLFLYGGTGLGKTHLLHA 190 Query: 84 WSDK-------------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND 123 + ++ K+L + I+ + +L++DI + Sbjct: 191 VGNAIVDNKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKE 250 Query: 124 ---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 + FH N++ + + +++T+ +P L SR V I P+ + Sbjct: 251 RSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVA 310 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 +++K D QI + ++A +I +R+ ++ E ++++ A G IT E L+ Sbjct: 311 ILMKKAEDHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALR 370 Query: 241 ET 242 + Sbjct: 371 DL 372 >gi|331270706|ref|YP_004397198.1| chromosomal replication initiator protein DnaA [Clostridium botulinum BKT015925] gi|329127256|gb|AEB77201.1| chromosomal replication initiator protein DnaA [Clostridium botulinum BKT015925] Length = 450 Score = 121 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 89/233 (38%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW------- 84 + D ++ ++ A + P+ + + G G GK+ L + Sbjct: 114 NPKYTFDSFVIGNSNRFAHAASLAVAESPAKAYNPLFIYGGVGLGKTHLMHAIGHYILQN 173 Query: 85 ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128 S+K + ++I + + + V L++DI + + + FH Sbjct: 174 TPSAKVVYVSSEKFTNELINSIKDDKNEEFRNKYRNVDVLLIDDIQFIAGKERTQEEFFH 233 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++++ D +++++ P L SR + + I PD + ++ K Sbjct: 234 TFNALYEADKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDFETRIAILKKKADV 293 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I ++ YI +++ ++ E + ++ + ++ LAAE LK+ Sbjct: 294 ENLNIPNEVMVYIATKIKSNIRELEGALIRIVAYSSLTNREVSVDLAAEALKD 346 >gi|253681350|ref|ZP_04862148.1| chromosomal replication initiator protein DnaA [Clostridium botulinum D str. 1873] gi|253562588|gb|EES92039.1| chromosomal replication initiator protein DnaA [Clostridium botulinum D str. 1873] Length = 449 Score = 121 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 89/233 (38%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW------- 84 + D ++ ++ A + P+ + + G G GK+ L + Sbjct: 113 NPKYTFDSFVIGNSNRFAHAASLAVAESPAKAYNPLFIYGGVGLGKTHLMHAIGHYILQN 172 Query: 85 ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128 S+K + ++I + + + V L++DI + + + FH Sbjct: 173 TPNAKVAYVSSEKFTNELINSIKDDKNEEFRNKYRNVDVLLIDDIQFIAGKERTQEEFFH 232 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++++ D +++++ P L SR + + I PD + ++ K Sbjct: 233 TFNALYEADKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDFETRIAILKKKADV 292 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I ++ YI +++ ++ E + ++ + ++ LAAE LK+ Sbjct: 293 ENLNIPNEVMVYIATKIKSNIRELEGALIRIVAYSSLTNREVSVDLAAEALKD 345 >gi|327402012|ref|YP_004342850.1| chromosomal replication initiator protein DnaA [Fluviicola taffensis DSM 16823] gi|327317520|gb|AEA42012.1| chromosomal replication initiator protein DnaA [Fluviicola taffensis DSM 16823] Length = 476 Score = 121 bits (305), Expect = 8e-26, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 81/237 (34%), Gaps = 33/237 (13%) Query: 35 CLGISRDDLLVHSAIEQA----VRLIDSWPSWPSRVVILVGPSGSGKSCLAN-------- 82 S ++ + A + + +++ G G GK+ LA+ Sbjct: 140 NPAYSFENFVEGDCNRLARSAGYAVANKPGGTAFNPLLIYGGVGLGKTHLAHSIGIGVKN 199 Query: 83 ---------IWSDKSRSTRFSNIAKSLDSILIDTR---KPVLLEDIDLLDFNDTQ---LF 127 + S+K + + I ++++D+ + F Sbjct: 200 QFPNKTVLYVSSEKFAHQFIDAVRNQTTNDFIHFYQMIDVLIIDDVQFFSGKEKTQDVFF 259 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 HI N +HQ +++T+ PV L SR K +S PD + ++ K Sbjct: 260 HIFNHLHQNGKQIILTSDKPPVEMQGMEQRLLSRFKWGLSADLSTPDLETRIAIMEKKMY 319 Query: 188 DRQIFIDKKLAAYIVQRME---RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 I + +++ Y+ + R + A + + +L IT LA +++ + Sbjct: 320 GSGIELPREVVEYLAYSINTNIREMEGAMTSL--LAQASL-NKKAITLDLAKQMIDK 373 >gi|157736272|ref|YP_001488955.1| chromosomal replication initiator protein DnaA [Arcobacter butzleri RM4018] gi|167016897|sp|A8EQT0|DNAA_ARCB4 RecName: Full=Chromosomal replication initiator protein DnaA gi|157698126|gb|ABV66286.1| chromosomal replication initiator protein DnaA [Arcobacter butzleri RM4018] Length = 438 Score = 121 bits (305), Expect = 8e-26, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 85/232 (36%), Gaps = 24/232 (10%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANI----WSDK 87 + D +V + + A + + P + + G +G GK+ L +K Sbjct: 103 NPSYTFDSFVVGPSNQMAYNASLAVANKPGIQYNPLFIYGGTGLGKTHLLQAVGNHAIEK 162 Query: 88 SRSTRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDFND---TQLFHII 130 + + I + ++ + +L++DI L + + FH Sbjct: 163 GNTVIYVTIEQFMNDFTFSIKNKNMEHFRNKYRKCDVLLIDDIQFLSGKEQTQEEFFHTF 222 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N +H ++MT+ P + L SR + + +P + +I K Sbjct: 223 NELHNAKKQIVMTSDRLPSQIAGLVDRLKSRFEWGLTADVQIPGLETKIAIIEKKSELNG 282 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 I + +++ +I ++ S+ E ++ +++ A IT + +LKE Sbjct: 283 ICLSREIINFIATNLDNSIREIEGVLIRINASASLLNQEITLPMVQGLLKEQ 334 >gi|288550165|ref|ZP_05969496.2| hypothetical protein ENTCAN_08106 [Enterobacter cancerogenus ATCC 35316] gi|288315995|gb|EFC54933.1| DNA replication initiator protein [Enterobacter cancerogenus ATCC 35316] Length = 442 Score = 121 bits (305), Expect = 8e-26, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + + D+ + + + A P + L G +G GK+ L + I + Sbjct: 107 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIVA 166 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 167 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 226 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 227 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 286 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 287 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 341 >gi|153827642|ref|ZP_01980309.1| chromosomal replication initiator protein DnaA [Vibrio cholerae MZO-2] gi|149737880|gb|EDM52785.1| chromosomal replication initiator protein DnaA [Vibrio cholerae MZO-2] Length = 416 Score = 121 bits (305), Expect = 8e-26, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 90/235 (38%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--- 87 ++ + + + A R + P + L G +G GK+ L + + Sbjct: 123 VNPKHKFNNFVEGKSNQLGLAAARQVSDNPGAAYNPLFLYGGTGLGKTHLLHAVGNAIVD 182 Query: 88 ----------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 ++ K+L + I+ + +L++DI + + F Sbjct: 183 NNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 242 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 243 HTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAE 302 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 D QI + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 303 DHQIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 357 >gi|146309668|ref|YP_001174742.1| chromosomal replication initiator protein DnaA [Enterobacter sp. 638] gi|145316544|gb|ABP58691.1| chromosomal replication initiator protein DnaA [Enterobacter sp. 638] Length = 483 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + + D+ + + + A P + L G +G GK+ L + I + Sbjct: 148 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIVA 207 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 208 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 267 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 268 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 327 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 328 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 382 >gi|325284917|ref|YP_004260707.1| Chromosomal replication initiator protein dnaA [Cellulophaga lytica DSM 7489] gi|324320371|gb|ADY27836.1| Chromosomal replication initiator protein dnaA [Cellulophaga lytica DSM 7489] Length = 474 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 42/259 (16%), Positives = 94/259 (36%), Gaps = 37/259 (14%) Query: 10 FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66 F +P + E QL + D+ L + A + + P Sbjct: 125 FVIPGIRNI----KIESQL------NPNYNFDNFLEGDSNRLARSAGMAVANKPGGTSFN 174 Query: 67 -VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTR 108 +++ G G GK+ LA+ ++K ++ K+ + I Sbjct: 175 PLLIFGGVGLGKTHLAHAIGVEIKDKYPERTVLYISAEKFTQQYIESVKKNTRNDFIHFY 234 Query: 109 KPV---LLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 + + +++D+ L FHI N +HQ +++T+ PV L SR Sbjct: 235 QLIDILIIDDVQFLSGKSGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSRF 294 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 K ++ PD + ++ + + +++ Y+ + ++ ++ E V + Sbjct: 295 KWGLSAELQTPDYETRVSILKNKLYRDGVEMPEEIIDYVAKNIKSNIRELEGAVISLIAQ 354 Query: 223 ALSRGMGITRSLAAEVLKE 241 + IT LA +++++ Sbjct: 355 SSFNKKEITIELAQQIVEK 373 >gi|1706462|sp|P49996|DNAA_VIBHA RecName: Full=Chromosomal replication initiator protein DnaA gi|1006569|gb|AAA78257.1| DnaA [Vibrio harveyi] Length = 468 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 90/235 (38%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--- 87 ++ + + + A R + P + L G +G GK+ L + + Sbjct: 133 VNPKHKFNNFVEGKSNQLGLAAARQVSDNPGAAYNPLFLYGGTGLGKTHLLHAVGNAIVD 192 Query: 88 ----------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 ++ K+L + I+ + +L++DI + + F Sbjct: 193 NNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 252 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 253 HTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAE 312 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 D QI + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 313 DHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 367 >gi|284034944|ref|YP_003384874.1| chromosomal replication initiator protein DnaA [Spirosoma linguale DSM 74] gi|283814237|gb|ADB36075.1| chromosomal replication initiator protein DnaA [Spirosoma linguale DSM 74] Length = 469 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 44/261 (16%), Positives = 85/261 (32%), Gaps = 32/261 (12%) Query: 13 PDKQKNDQPKNKEE-----QLFFSFPRCLGISRDDLLVHSAIEQA----VRLIDSWPSWP 63 PD D K+ + L + D+ + A + + Sbjct: 108 PDNVNPDILKSPFQLKDLDSLTLDSYLNPSYTFDNYVEGDCNRLARSAGYAVAERPGVTS 167 Query: 64 SRVVILVGPSGSGKSCLANIWS------DKSRSTRFSNIAKSLDSILIDTRK-------- 109 +++ G G GK+ L ++ + + K + L R Sbjct: 168 FNPLMIYGGVGLGKTHLVQAIGNFIKNNNQGKFVLYVTSEKFTNQFLNAVRSDGIRDFTS 227 Query: 110 ------PVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 ++++D+ L + FHI N +HQ ++MT+ P + L S Sbjct: 228 FYMQVDVLVIDDVQFLQKKEKTQEIFFHIFNHLHQSGKQIIMTSDRAPRALDGLEDRLLS 287 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 R K + PD + +I K I+ID + Y+ + ++ E ++ + Sbjct: 288 RFKWGLSADLQTPDLETRIAIIQKKLQAEGIYIDDTVIEYLAHSVNTNVRELEGVIVSLM 347 Query: 221 NLALSRGMGITRSLAAEVLKE 241 A I LA + L+ Sbjct: 348 AQASLNRREIDLELAKQTLRN 368 >gi|150025276|ref|YP_001296102.1| chromosomal replication initiator protein DnaA [Flavobacterium psychrophilum JIP02/86] gi|166201882|sp|A6GYW8|DNAA_FLAPJ RecName: Full=Chromosomal replication initiator protein DnaA gi|149771817|emb|CAL43291.1| Chromosomal replication initiator protein DnaA [Flavobacterium psychrophilum JIP02/86] Length = 478 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 44/262 (16%), Positives = 97/262 (37%), Gaps = 32/262 (12%) Query: 12 VPDKQKNDQPKNKE-----EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV 66 VP +QKN + +N L S D+ L + A + + P Sbjct: 115 VPVQQKNPELRNPFIIPGIRNLKIESQLNANYSFDNFLEGDSNRLARSAGMAVANKPGGT 174 Query: 67 ----VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILI 105 +++ G G GK+ LA+ ++ ++ K+ + I Sbjct: 175 SFNPLLIFGGVGLGKTHLAHAIGVEVKEKYPEKTVLYISAEIFTQQYIESVKKNNRNDFI 234 Query: 106 DTRKPV---LLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC 159 + + +++D+ L FHI N +HQ +++T+ PV L Sbjct: 235 HFYQLIDVLIIDDVQFLSGKTGTQDVFFHIFNYLHQNGKQVILTSDKAPVDMQDIEQRLL 294 Query: 160 SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 SR K +I PD + ++ + + + +++ Y+ + ++ ++ E + + Sbjct: 295 SRFKWGLSAEIHQPDYETRISILKNILYRDGVEMPEEIIEYVARNIKSNVRELEGAIISL 354 Query: 220 DNLALSRGMGITRSLAAEVLKE 241 + +T LA +V+++ Sbjct: 355 IAQSSFNKKEVTLELAKQVVEK 376 >gi|238917984|ref|YP_002931498.1| chromosomal replication initiator protein DnaA, [Edwardsiella ictaluri 93-146] gi|259645249|sp|C5BHC5|DNAA_EDWI9 RecName: Full=Chromosomal replication initiator protein DnaA gi|238867552|gb|ACR67263.1| chromosomal replication initiator protein DnaA, putative [Edwardsiella ictaluri 93-146] Length = 463 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 91/235 (38%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + D+ + + + A P + L G +G GK+ L + I + Sbjct: 128 VNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 187 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 188 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 247 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 248 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 307 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 308 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 362 >gi|295095340|emb|CBK84430.1| chromosomal replication initiator protein DnaA [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 441 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + + D+ + + + A P + L G +G GK+ L + I + Sbjct: 106 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 165 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 166 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 225 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 226 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 285 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 286 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 340 >gi|225377585|ref|ZP_03754806.1| hypothetical protein ROSEINA2194_03235 [Roseburia inulinivorans DSM 16841] gi|225210561|gb|EEG92915.1| hypothetical protein ROSEINA2194_03235 [Roseburia inulinivorans DSM 16841] Length = 451 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 39/272 (14%), Positives = 95/272 (34%), Gaps = 35/272 (12%) Query: 10 FFVPDKQKNDQP------KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRL---IDSWP 60 F +P++ +N +P K E + + D +V S A + P Sbjct: 81 FILPEQTRNIRPSNNKGKKTPEPEASKRSNLNPNYTFDTFVVGSNNRFAQSASLAVAESP 140 Query: 61 SWPSRVVILVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDTRKP----- 110 + + G G GK+ L + I + ++ + +I++ + Sbjct: 141 GEAYNPLYIYGGPGLGKTHLMHSIGHFILERNPEAKVLYVTSEEFTNEVIESIRSGNASA 200 Query: 111 -------------VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 ++++D+ + + + FH N++H +++T+ P Sbjct: 201 MNKFREKYRTIDVLMIDDVQFIIGKESTQEEFFHTFNALHSAGKQIILTSDKPPKDMETL 260 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 + SR + + I PD + ++ + + + + YI ++ ++ E Sbjct: 261 EERIRSRFEWGLMADIGAPDYETRMAILRRKVESDDMSLSDDILNYIANNIKSNIRELEG 320 Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 ++K+ + IT +A + L+ D Sbjct: 321 ALNKLLAYSNLEKTEITMEIAKKELQNIITPD 352 >gi|153948|gb|AAA02815.1| dnaA protein [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 466 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 43/274 (15%), Positives = 101/274 (36%), Gaps = 39/274 (14%) Query: 8 YSFFVPDKQKNDQPKN-------------KEEQLFFSFPRCLGISRDDLLVHSAIEQAVR 54 ++ P + QP+ + + + + D+ + + + A Sbjct: 92 HNVVAPAQTTTTQPQRVAPAARSGWDNVPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARA 151 Query: 55 LIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSDKSRS--------TRFSNIAK 98 P + L G +G GK+ L + I + K + ++ K Sbjct: 152 AARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVK 211 Query: 99 SLDSILID-------TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFP 148 +L + I+ + +L++DI + + FH N++ + + +++T+ +P Sbjct: 212 ALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYP 271 Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 L SR V I P+ + +++K + I + ++A +I +R+ + Sbjct: 272 KEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLRSN 331 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + E ++++ A G IT E L++ Sbjct: 332 VRELEGALNRVIANANFTGRAITIDFVREALRDL 365 >gi|261250639|ref|ZP_05943214.1| chromosomal replication initiator protein dnaA [Vibrio orientalis CIP 102891] gi|260939208|gb|EEX95195.1| chromosomal replication initiator protein dnaA [Vibrio orientalis CIP 102891] Length = 459 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 89/235 (37%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--- 87 + + + + A R + P + L G +G GK+ L + + Sbjct: 124 VNPKHKFTNFVEGKSNQLGLAAARQVSDNPGSAYNPLFLYGGTGLGKTHLLHAVGNAIVD 183 Query: 88 ----------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 ++ K+L + I+ + +L++DI + + F Sbjct: 184 NKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 243 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 244 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAE 303 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 D QI + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 304 DHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 358 >gi|256751455|ref|ZP_05492333.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter ethanolicus CCSD1] gi|256749674|gb|EEU62700.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter ethanolicus CCSD1] Length = 443 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 36/233 (15%), Positives = 91/233 (39%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD----- 86 + D +V ++ + A + P++ + + G G GK+ L + Sbjct: 109 NPKYTFDTFVVGNSNKLAHAACLAVAQAPAKAYNPLFIYGGVGLGKTHLMHAIGHFINKH 168 Query: 87 KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 +S +++ + L+++ K +L++DI + + + FH Sbjct: 169 QSGYKIMYVTSETFTNELVNSIKDDKNEEFRNKYRNIDVLLIDDIQFIAKKERTQEEFFH 228 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++++ + +++++ P L SR + + I PD + ++ K Sbjct: 229 TFNTLYEANKQIVISSDRPPKEIPTLEERLRSRFEWGLIADIQPPDYETRIAILKKKAQT 288 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I ++ AY+ ++++ ++ E + ++ + I LA LKE Sbjct: 289 ENLNIPDEVLAYVAEKIQSNIRELEGALIRIVAFSNLTKTNIDLELAKHALKE 341 >gi|255033818|ref|YP_003084439.1| chromosomal replication initiator protein DnaA [Dyadobacter fermentans DSM 18053] gi|254946574|gb|ACT91274.1| chromosomal replication initiator protein DnaA [Dyadobacter fermentans DSM 18053] Length = 480 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 51/276 (18%), Positives = 90/276 (32%), Gaps = 36/276 (13%) Query: 1 MNLMK-EDYSFFVPDKQKNDQP------KNKEEQLFFSFPRCLGISRDDLLVHSAIEQA- 52 MN+ + ++ PD D + ++ L S D+ + A Sbjct: 105 MNVSTQKSPNYSKPDNFSTDPRMGATVREKDQDSLTLDTYLNPNYSFDNFIEGDCNRLAR 164 Query: 53 ---VRLIDSWPSWPSRVVILVGPSGSGKSCLANIW-----------------SDKSRSTR 92 + +++ G G GK+ L S+K + Sbjct: 165 SAGFAVAQRPGLTSFNPLMMYGGVGLGKTHLVQAIGNYITNHYENKLVLYVSSEKFTNQF 224 Query: 93 FSNIAKSLDSILIDTR---KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTART 146 ++I + D + ++D+ L + FHI N +HQ ++MT+ Sbjct: 225 INSIRNNTLQEFTDFYMKVDVLAIDDVQFLSGKEKTQDTFFHIFNHLHQLGKQIIMTSDR 284 Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206 P L SR K + PD + +I K I ID + YI + Sbjct: 285 PPRELQGLQDRLLSRFKWGLTADLQAPDFETRIAIIQKKIQSEGISIDYDVIEYIAHSVN 344 Query: 207 RSLVFAEK-LVDKMDNLALSRGMGITRSLAAEVLKE 241 ++ E +V M +L+R I LA L+ Sbjct: 345 SNVRELEGVIVSLMAQASLTR-RNIDVELAKNTLRN 379 >gi|119713116|gb|ABL97185.1| putative DNA replication factor [uncultured marine bacterium EB0_49D07] Length = 234 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 54/232 (23%), Positives = 90/232 (38%), Gaps = 14/232 (6%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAI-EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 N QL F F S D E RL D S + +I+ G GSGKS L Sbjct: 2 NNPTQLIFPFQVNQKASFDSFFCSPDNIELMSRLTDLASSENTDELIINGAEGSGKSFLM 61 Query: 82 NIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLL---DFNDTQLFHI 129 ++ S+ ++ + + + V ++D+ L+ + +T LF++ Sbjct: 62 QAICNELSSSGKQFAFIPMNKAINMGVEIFQNLASLDAVCIDDLQLILSKEEWETALFNL 121 Query: 130 INSIHQYDSSLLMT-ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 IN Q SL+++ + LPDL SR+K +K+ D+ L + + + Sbjct: 122 INQCQQSYCSLILSFGGNQSLEDSTQLPDLLSRIKRMEFMKLQAVLDESLNQALGFVSQQ 181 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 I I+K +++ R + +D A S IT L E L Sbjct: 182 LDINIEKAEIEFLLNHQTREFSILVDNLISLDKQAASLKRKITIPLIKETLN 233 >gi|156972777|ref|YP_001443684.1| chromosomal replication initiation protein [Vibrio harveyi ATCC BAA-1116] gi|166215368|sp|A7N1E9|DNAA_VIBHB RecName: Full=Chromosomal replication initiator protein DnaA gi|156524371|gb|ABU69457.1| hypothetical protein VIBHAR_00442 [Vibrio harveyi ATCC BAA-1116] Length = 468 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 90/235 (38%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--- 87 ++ + + + A R + P + L G +G GK+ L + + Sbjct: 133 VNPKHKFNNFVEGKSNQLGLAAARQVSDNPGAAYNPLFLYGGTGLGKTHLLHAVGNAIVD 192 Query: 88 ----------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 ++ K+L + I+ + +L++DI + + F Sbjct: 193 NNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 252 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 253 HTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAE 312 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 D QI + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 313 DHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 367 >gi|37678195|ref|NP_932804.1| chromosomal replication initiation protein [Vibrio vulnificus YJ016] gi|61212682|sp|Q7MQJ7|DNAA_VIBVY RecName: Full=Chromosomal replication initiator protein DnaA gi|37196934|dbj|BAC92775.1| chromosomal DNA replication initiator DnaA [Vibrio vulnificus YJ016] Length = 468 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 88/235 (37%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDK--- 87 ++ + + + + P + L G +G GK+ L + + Sbjct: 133 VNPKHKFNNFVEGKSNQLGLAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNAIVD 192 Query: 88 ----------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 ++ K+L + I+ + +L++DI + + F Sbjct: 193 NKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 252 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 253 HTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAE 312 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 D QI + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 313 DHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 367 >gi|126642638|ref|YP_001085622.1| putative chromosomal replication initiator DnaA-type [Acinetobacter baumannii ATCC 17978] Length = 205 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 41/189 (21%), Positives = 78/189 (41%), Gaps = 20/189 (10%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV-LLEDIDLLDFND 123 + G +G+GKS L + D S I SL +L + + LE DL+ +D Sbjct: 13 NRFYIYGGAGTGKSHLLSAICDSYLEVGKSAIKVSLLELLDAPIEAITCLEHYDLVALDD 72 Query: 124 T-----------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +FH++N ++ L+ ++R P+ + LPDL SRL A VK+ Sbjct: 73 IESISGVPHWQKAVFHLMN---NHEGQLVFSSRVAPIELKLELPDLQSRLTQAVSVKV-- 127 Query: 173 PDDDF---LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229 P ++ + A R I D+++ Y++ + V +++ L Sbjct: 128 PSGSLYADRYALVTSVMARRGIHFDQQIVDYLLLHGPHQASILLQTVAQLEKLLKGEKTK 187 Query: 230 ITRSLAAEV 238 ++ + ++ Sbjct: 188 LSNATLRQI 196 >gi|262273130|ref|ZP_06050947.1| chromosomal replication initiator protein dnaA [Grimontia hollisae CIP 101886] gi|262222886|gb|EEY74194.1| chromosomal replication initiator protein dnaA [Grimontia hollisae CIP 101886] Length = 461 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 36/235 (15%), Positives = 85/235 (36%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSD---- 86 + + + + A+ P + L G +G GK+ L + + Sbjct: 126 VNPKHKFTNFVEGKSNQLALAAARQVADNPGAAYNPLFLYGGTGLGKTHLLHAVGNAISD 185 Query: 87 -KSRSTRFSNIAKSLDSILIDT---------------RKPVLLEDIDLLDFND---TQLF 127 K+ + ++ ++ +L++DI + + F Sbjct: 186 RKADARVVYMHSERFVQDMVKALQNNQIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 245 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 246 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAE 305 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 D I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 306 DHNIRLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 360 >gi|326423789|ref|NP_759961.2| chromosomal replication initiator protein DnaA [Vibrio vulnificus CMCP6] gi|31340045|sp|Q8DDI9|DNAA_VIBVU RecName: Full=Chromosomal replication initiator protein DnaA gi|319999154|gb|AAO09488.2| chromosomal replication initiator protein DnaA [Vibrio vulnificus CMCP6] Length = 468 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 88/235 (37%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDK--- 87 ++ + + + + P + L G +G GK+ L + + Sbjct: 133 VNPKHKFNNFVEGKSNQLGLAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNAIVD 192 Query: 88 ----------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 ++ K+L + I+ + +L++DI + + F Sbjct: 193 NKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 252 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 253 HTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAE 312 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 D QI + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 313 DHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 367 >gi|320157816|ref|YP_004190195.1| chromosomal replication initiator protein DnaA [Vibrio vulnificus MO6-24/O] gi|319933128|gb|ADV87992.1| chromosomal replication initiator protein DnaA [Vibrio vulnificus MO6-24/O] Length = 445 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 88/235 (37%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDK--- 87 ++ + + + + P + L G +G GK+ L + + Sbjct: 110 VNPKHKFNNFVEGKSNQLGLAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNAIVD 169 Query: 88 ----------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 ++ K+L + I+ + +L++DI + + F Sbjct: 170 NKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 229 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 230 HTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAE 289 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 D QI + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 290 DHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 344 >gi|167957210|ref|ZP_02544284.1| chromosomal replication initiator protein DnaA [candidate division TM7 single-cell isolate TM7c] Length = 451 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 33/214 (15%), Positives = 80/214 (37%), Gaps = 25/214 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86 + D+ +V S+ + A + S P + L G SG GK+ L I Sbjct: 117 NPRYTFDNFIVGSSNDLAYAACQAVASHPGEKYNPLYLYGGSGLGKTHLMQAVGNEIIKK 176 Query: 87 KSRSTRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDFND---TQLFHI 129 + + ++ + +D+ + ++++D+ + + + FH Sbjct: 177 QPSARVLYITTETFVNEFLDSIRFKKKGFSDKYRNVDVLIVDDMQFIAGKEKTQDEFFHT 236 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N +HQ + +++++ P S L SR + + I +PD + ++ Sbjct: 237 FNDLHQNNKQIIISSDKPPKSIPTLTDRLRSRFEWGMAIDIQMPDYETRCAIVKAKAEIS 296 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 +D + Y+ + ++ E ++++ A Sbjct: 297 NTELDSDVVEYLATNFKTNIRELEGALNRLLAYA 330 >gi|311277333|ref|YP_003939564.1| chromosomal replication initiator protein DnaA [Enterobacter cloacae SCF1] gi|308746528|gb|ADO46280.1| chromosomal replication initiator protein DnaA [Enterobacter cloacae SCF1] Length = 465 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + + D+ + + + A P + L G +G GK+ L + I + Sbjct: 130 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIIA 189 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 190 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 249 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 250 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 309 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 310 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 364 >gi|255691401|ref|ZP_05415076.1| ATPase [Bacteroides finegoldii DSM 17565] gi|260623047|gb|EEX45918.1| ATPase [Bacteroides finegoldii DSM 17565] Length = 473 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 40/264 (15%), Positives = 86/264 (32%), Gaps = 30/264 (11%) Query: 11 FVPDKQKNDQPKNKEEQLFFSFPR-CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66 + + + Q P + ++ + + + + + ++ P Sbjct: 110 IFDGNKAPNFLQAPAVQ-DLD-PHLNPNYNFENFIEGYSNKLSRSVAEAVALKPGGTAFN 167 Query: 67 -VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID------------------- 106 + L G SG GK+ LAN K + + + L Sbjct: 168 PLFLYGASGVGKTHLANAIGTKIKEIYPEKRVLYVSAHLFQVQYTDSVRNNTTNDFINFY 227 Query: 107 -TRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 T ++++DI FHI N +HQ L++T+ PV L +R Sbjct: 228 QTIDVLIIDDIQEFAGVTKTQNNFFHIFNHLHQNGKQLILTSDRAPVLLQGIEERLLTRF 287 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 K V ++ P + + ++ + +++ YI + + S+ E +V + Sbjct: 288 KWGMVAELEKPTVELRKNILRNKIHRDGLQFPEEVIDYIAENVNESVRDLEGIVIAIMAR 347 Query: 223 ALSRGMGITRSLAAEVLKETQQCD 246 + I LA ++ + Sbjct: 348 STIFNKEIDMDLAQHIVHGVVHNE 371 >gi|304398068|ref|ZP_07379943.1| chromosomal replication initiator protein DnaA [Pantoea sp. aB] gi|304354354|gb|EFM18726.1| chromosomal replication initiator protein DnaA [Pantoea sp. aB] Length = 471 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 91/235 (38%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + D+ + + + A P + L G +G GK+ L + I + Sbjct: 136 VNNRHNFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIIA 195 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 196 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 255 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 256 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 315 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 316 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 370 >gi|16767123|ref|NP_462738.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56415711|ref|YP_152786.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161616956|ref|YP_001590921.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167548872|ref|ZP_02342631.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167992432|ref|ZP_02573530.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168233393|ref|ZP_02658451.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168235478|ref|ZP_02660536.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168260377|ref|ZP_02682350.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168464831|ref|ZP_02698723.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168818302|ref|ZP_02830302.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194442253|ref|YP_002043088.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194448643|ref|YP_002047871.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194470761|ref|ZP_03076745.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194736495|ref|YP_002116782.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197248955|ref|YP_002148776.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197364639|ref|YP_002144276.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|200388152|ref|ZP_03214764.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204928789|ref|ZP_03219988.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|238913091|ref|ZP_04656928.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|20141364|sp|P35891|DNAA_SALTY RecName: Full=Chromosomal replication initiator protein DnaA gi|71151803|sp|Q5PKU6|DNAA_SALPA RecName: Full=Chromosomal replication initiator protein DnaA gi|189044603|sp|A9MX77|DNAA_SALPB RecName: Full=Chromosomal replication initiator protein DnaA gi|226735838|sp|B5EYX2|DNAA_SALA4 RecName: Full=Chromosomal replication initiator protein DnaA gi|226735842|sp|B4TAU9|DNAA_SALHS RecName: Full=Chromosomal replication initiator protein DnaA gi|226735843|sp|B4SYA8|DNAA_SALNS RecName: Full=Chromosomal replication initiator protein DnaA gi|226735844|sp|B5BIL4|DNAA_SALPK RecName: Full=Chromosomal replication initiator protein DnaA gi|226735845|sp|B4TN07|DNAA_SALSV RecName: Full=Chromosomal replication initiator protein DnaA gi|16422412|gb|AAL22697.1| DNA replication initiator protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56129968|gb|AAV79474.1| chromosomal replication initiator protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161366320|gb|ABX70088.1| hypothetical protein SPAB_04777 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194400916|gb|ACF61138.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194406947|gb|ACF67166.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194457125|gb|EDX45964.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194711997|gb|ACF91218.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195632396|gb|EDX50880.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197096116|emb|CAR61712.1| chromosomal replication initiator protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197212658|gb|ACH50055.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197291232|gb|EDY30584.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|199605250|gb|EDZ03795.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204322222|gb|EDZ07420.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205325509|gb|EDZ13348.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205329368|gb|EDZ16132.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205332569|gb|EDZ19333.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205344670|gb|EDZ31434.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205350503|gb|EDZ37134.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|261248979|emb|CBG26836.1| chromosomal replication initiator protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996124|gb|ACY91009.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160371|emb|CBW19896.1| chromosomal replication initiator protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914968|dbj|BAJ38942.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320088259|emb|CBY98021.1| Chromosomal replication initiator protein dnaA [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321225556|gb|EFX50611.1| Chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322617249|gb|EFY14154.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619063|gb|EFY15949.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625130|gb|EFY21958.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322630181|gb|EFY26952.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634393|gb|EFY31127.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635278|gb|EFY31993.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642898|gb|EFY39482.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647622|gb|EFY44109.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650572|gb|EFY46979.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656402|gb|EFY52694.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322661582|gb|EFY57805.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322661663|gb|EFY57882.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668223|gb|EFY64381.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672848|gb|EFY68956.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322674971|gb|EFY71057.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683661|gb|EFY79674.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687737|gb|EFY83706.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323192048|gb|EFZ77283.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200530|gb|EFZ85608.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204956|gb|EFZ89941.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206699|gb|EFZ91656.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211771|gb|EFZ96604.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218633|gb|EGA03340.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220034|gb|EGA04504.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224804|gb|EGA09069.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323232487|gb|EGA16589.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235262|gb|EGA19347.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323241050|gb|EGA25087.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241400|gb|EGA25432.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248631|gb|EGA32561.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252070|gb|EGA35930.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258626|gb|EGA42289.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262343|gb|EGA45901.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323268179|gb|EGA51655.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270593|gb|EGA54038.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|332990688|gb|AEF09671.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 466 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 43/274 (15%), Positives = 101/274 (36%), Gaps = 39/274 (14%) Query: 8 YSFFVPDKQKNDQPKN-------------KEEQLFFSFPRCLGISRDDLLVHSAIEQAVR 54 ++ P + QP+ + + + + D+ + + + A Sbjct: 92 HNVVAPAQTTTAQPQRVAPAARSGWDNVPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARA 151 Query: 55 LIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSDKSRS--------TRFSNIAK 98 P + L G +G GK+ L + I + K + ++ K Sbjct: 152 AARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVK 211 Query: 99 SLDSILID-------TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFP 148 +L + I+ + +L++DI + + FH N++ + + +++T+ +P Sbjct: 212 ALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYP 271 Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 L SR V I P+ + +++K + I + ++A +I +R+ + Sbjct: 272 KEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLRSN 331 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + E ++++ A G IT E L++ Sbjct: 332 VRELEGALNRVIANANFTGRAITIDFVREALRDL 365 >gi|283787598|ref|YP_003367463.1| chromosomal replication initiator protein [Citrobacter rodentium ICC168] gi|282951052|emb|CBG90730.1| chromosomal replication initiator protein [Citrobacter rodentium ICC168] Length = 468 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 44/274 (16%), Positives = 101/274 (36%), Gaps = 40/274 (14%) Query: 9 SFFVPDKQKNDQPKNK--------------EEQLFFSFPRCLGISRDDLLVHSAIEQAVR 54 +F P + QP+ + + + + D+ + + + A Sbjct: 94 NFAAPAQVTQAQPQRPEPTASRPGWDNVPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARA 153 Query: 55 LIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSDKSRS--------TRFSNIAK 98 P + L G +G GK+ L + I + K + ++ K Sbjct: 154 AARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVK 213 Query: 99 SLDSILID-------TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFP 148 +L + I+ + +L++DI + + FH N++ + + +++T+ +P Sbjct: 214 ALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYP 273 Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 L SR V I P+ + +++K + I + ++A +I +R+ + Sbjct: 274 KEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLRSN 333 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + E ++++ A G IT E L++ Sbjct: 334 VRELEGALNRVIANANFTGRAITIDFVREALRDL 367 >gi|205359063|ref|ZP_02666990.2| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205338899|gb|EDZ25663.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|323132199|gb|ADX19629.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 470 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 43/274 (15%), Positives = 101/274 (36%), Gaps = 39/274 (14%) Query: 8 YSFFVPDKQKNDQPKN-------------KEEQLFFSFPRCLGISRDDLLVHSAIEQAVR 54 ++ P + QP+ + + + + D+ + + + A Sbjct: 96 HNVVAPAQTTTAQPQRVAPAARSGWDNVPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARA 155 Query: 55 LIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSDKSRS--------TRFSNIAK 98 P + L G +G GK+ L + I + K + ++ K Sbjct: 156 AARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVK 215 Query: 99 SLDSILID-------TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFP 148 +L + I+ + +L++DI + + FH N++ + + +++T+ +P Sbjct: 216 ALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYP 275 Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 L SR V I P+ + +++K + I + ++A +I +R+ + Sbjct: 276 KEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLRSN 335 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + E ++++ A G IT E L++ Sbjct: 336 VRELEGALNRVIANANFTGRAITIDFVREALRDL 369 >gi|116619146|ref|YP_821302.1| chromosomal replication initiator protein DnaA [Candidatus Solibacter usitatus Ellin6076] gi|116222308|gb|ABJ81017.1| chromosomal replication initiator protein DnaA [Candidatus Solibacter usitatus Ellin6076] Length = 437 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 39/232 (16%), Positives = 89/232 (38%), Gaps = 26/232 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDK---- 87 + + +V + + A S + PSR + L G G GK+ L + + Sbjct: 104 NPKFTFNSFVVGACNQFAHAAAKSVATNPSRSYNPLFLYGGVGMGKTHLMHAIGRQLIDQ 163 Query: 88 --SRSTRFSNIAKSLDSILI--------------DTRKPVLLEDIDLLDFND---TQLFH 128 S +++ + ++ ++ +L++DI LL + + FH Sbjct: 164 FGSMRIIYTSSERFMNEMISCIRTERMQQFHQRYREADVLLIDDIQLLGNKERTQEEFFH 223 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N +H + +++++ + P L L SR + + I PD + ++ K Sbjct: 224 TFNELHDHQKQIVISSDSPPKDIPGLLERLRSRFEWGLMADIQPPDLETKMAILDKKAEI 283 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + + ++ + + ++ E + K+ + G I +A +VLK Sbjct: 284 EGVELPDDVRTFMASKTKSNVRELEGALVKLIAYSSLTGTPIHLQMAQQVLK 335 >gi|323143754|ref|ZP_08078422.1| putative DnaA regulatory inactivator Hda [Succinatimonas hippei YIT 12066] gi|322416467|gb|EFY07133.1| putative DnaA regulatory inactivator Hda [Succinatimonas hippei YIT 12066] Length = 236 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 87/230 (37%), Gaps = 14/230 (6%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLI-DSWPSWPSRVVILVGPSGSGKSCLA 81 Q + D V AV L+ ++ + + + GP GKS L Sbjct: 6 KAPRQEPLALKINDE-GFFDSFVPGGNRAAVDLLHEAVLRNKNELFFVFGPQHVGKSHLL 64 Query: 82 NIWSDK-----SRSTRFSNIAKSLDSILIDTRKP---VLLEDIDLLDFN---DTQLFHII 130 N + S + S L+ + +P ++L++ID + + + LF + Sbjct: 65 NALFREIKDPSSNAFFVDLRLVKDISPLLLSVEPYPIIILDNIDAIAGDSDWELALFGLY 124 Query: 131 NSIHQYD-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N + + +ART DL +R + + + D+ + R Sbjct: 125 NRWIDKGEGTFIASARTSADLIPFLRKDLNTRFENGVSLPLDFLDEKSCCDALQIRAKKR 184 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 I +K+AA++V+ R + K++D++D +LS +T +VL Sbjct: 185 GFIIPEKVAAFLVKHSNRDMDSLVKILDRLDEASLSEQHELTVPFVKKVL 234 >gi|308188765|ref|YP_003932896.1| Chromosomal replication initiator protein dnaA [Pantoea vagans C9-1] gi|308059275|gb|ADO11447.1| Chromosomal replication initiator protein dnaA [Pantoea vagans C9-1] Length = 471 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 91/235 (38%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + D+ + + + A P + L G +G GK+ L + I + Sbjct: 136 VNNRHNFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIIA 195 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 196 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 255 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 256 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 315 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 316 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 370 >gi|326625574|gb|EGE31919.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 443 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 43/274 (15%), Positives = 101/274 (36%), Gaps = 39/274 (14%) Query: 8 YSFFVPDKQKNDQPKN-------------KEEQLFFSFPRCLGISRDDLLVHSAIEQAVR 54 ++ P + QP+ + + + + D+ + + + A Sbjct: 69 HNVVAPTQTTTAQPQRVAPAARSGWDNVPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARA 128 Query: 55 LIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSDKSRS--------TRFSNIAK 98 P + L G +G GK+ L + I + K + ++ K Sbjct: 129 AARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVK 188 Query: 99 SLDSILID-------TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFP 148 +L + I+ + +L++DI + + FH N++ + + +++T+ +P Sbjct: 189 ALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYP 248 Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 L SR V I P+ + +++K + I + ++A +I +R+ + Sbjct: 249 KEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLRSN 308 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + E ++++ A G IT E L++ Sbjct: 309 VRELEGALNRVIANANFTGRAITIDFVREALRDL 342 >gi|90581124|ref|ZP_01236923.1| chromosomal replication initiation protein [Vibrio angustum S14] gi|90437645|gb|EAS62837.1| chromosomal replication initiation protein [Vibrio angustum S14] Length = 466 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 91/235 (38%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLAN-----IWS 85 + ++ + + + + P + L G +G GK+ L + I + Sbjct: 131 VNPKHNFNNFVEGKSNQLGLAACRQVSDNPGAAYNPLFLYGGTGLGKTHLLHAVGNAIAN 190 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 191 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 250 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 251 HTFNALLEGNQQIILTSDRYPREINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAE 310 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 D I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 311 DHNIRLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 365 >gi|323487687|ref|ZP_08092945.1| chromosomal replication initiation protein [Planococcus donghaensis MPA1U2] gi|323398421|gb|EGA91209.1| chromosomal replication initiation protein [Planococcus donghaensis MPA1U2] Length = 447 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 49/268 (18%), Positives = 99/268 (36%), Gaps = 37/268 (13%) Query: 10 FFVPDKQKNDQ-----PKNKE---EQLFFSFP--RCLGISRDDLLVHSAIEQAVRLIDSW 59 F VP Q D P+ K +Q F P + D ++ S A + Sbjct: 78 FVVPKDQDMDDFQLPAPRVKPGQDQQHEF-LPGMLNPKYTFDTFVIGSGNRFAHAASLAV 136 Query: 60 PSWPSRV---VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKS 99 P++ + + G G GK+ L + S+K + ++I + Sbjct: 137 AEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVLEHNPNAKVVYLSSEKFTNEFINSIRDN 196 Query: 100 LDSILIDTRKPV---LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 D + V L++DI L + + FH N++H+ +++++ P Sbjct: 197 KTGEFRDKYRSVDILLIDDIQFLAGKEQTQEEFFHTFNTLHEESKQIIISSDRPPKEIPT 256 Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213 L SR + + I+ PD + ++ K + I + YI ++ ++ E Sbjct: 257 LEDRLRSRFEWGLITDITPPDLETRIAILRKKAKADGLDIPNDVMTYIANSIDSNIRELE 316 Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKE 241 + ++ + ++ LA+E LK+ Sbjct: 317 GALIRVVAYSSLINRDMSAELASEALKD 344 >gi|320180043|gb|EFW54985.1| Chromosomal replication initiator protein DnaA [Shigella boydii ATCC 9905] gi|320185533|gb|EFW60299.1| Chromosomal replication initiator protein DnaA [Shigella flexneri CDC 796-83] Length = 439 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + + D+ + + + A P + L G +G GK+ L + I + Sbjct: 104 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 163 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 164 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 223 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 224 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 283 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 284 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 338 >gi|251787653|ref|YP_003002374.1| chromosomal replication initiator protein DnaA [Dickeya zeae Ech1591] gi|247536274|gb|ACT04895.1| chromosomal replication initiator protein DnaA [Dickeya zeae Ech1591] Length = 464 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 91/235 (38%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + D+ + + + A P + L G +G GK+ L + I + Sbjct: 129 VNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 188 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 189 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 248 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 249 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 308 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 309 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRSITIDFVREALRDL 363 >gi|317499294|ref|ZP_07957567.1| chromosomal replication initiator protein DnaA [Lachnospiraceae bacterium 5_1_63FAA] gi|291558404|emb|CBL37204.1| chromosomal replication initiator protein DnaA [butyrate-producing bacterium SSC/2] gi|316893463|gb|EFV15672.1| chromosomal replication initiator protein DnaA [Lachnospiraceae bacterium 5_1_63FAA] Length = 447 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 40/269 (14%), Positives = 97/269 (36%), Gaps = 28/269 (10%) Query: 2 NLMKEDYSFFVPDKQKNDQPKNKEEQLFF--SFPRCLGISRDDLLVHSAIEQAVRL---I 56 +L + Y +++ ++P+ + + D ++ A + Sbjct: 78 DLTGKKYDIEFELEKEGEKPQETPAAAPEHDNNNLNPRYTFDTFVIGDNNRMAHAASIAV 137 Query: 57 DSWPSWPSRVVILVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDTRKP- 110 P+ + L G +G GK+ L + I S ++ + +I++ + Sbjct: 138 AEAPAEAYNPLFLYGGAGLGKTHLMHSIAHYIIEHNSSLNVLYVTSEDFTNEVINSIQHK 197 Query: 111 --------------VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 +L++DI + + + FH N+++ +++++ P V Sbjct: 198 KQEELRSKYRNIDVLLVDDIQFVIGKESTQQEFFHTFNALYNSKKQIILSSDKPPKELDV 257 Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213 L SR V I P+ + ++ K I+ID ++ YI ++ ++ E Sbjct: 258 LEERLRSRFSWGLPVDIQPPNYETKVAILRKRAELDNIYIDDEIFDYIATHIKSNIRDLE 317 Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++K+ + I L+ L++ Sbjct: 318 GALNKIKVYSKLNKKPIDLELSKIALQDL 346 >gi|260174144|ref|ZP_05760556.1| chromosomal replication initiation protein [Bacteroides sp. D2] gi|315922409|ref|ZP_07918649.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313696284|gb|EFS33119.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 470 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 39/242 (16%), Positives = 81/242 (33%), Gaps = 28/242 (11%) Query: 33 PR-CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV----VILVGPSGSGKSCLANIWSDK 87 P + ++ + + + + + ++ P + L G SG GK+ LAN K Sbjct: 130 PHLNPNYNFENFIEGYSNKLSRSVAEAVAQKPGGTAFNPLFLYGASGVGKTHLANAIGTK 189 Query: 88 SRSTRFSNIAKSLDSILID--------------------TRKPVLLEDIDLLDF---NDT 124 + + + L T ++++DI Sbjct: 190 IKEIYPEKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQTIDVLIIDDIQEFAGVTKTQN 249 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 FHI N +HQ L++T+ PV L +R K V ++ P + + ++ Sbjct: 250 NFFHIFNHLHQNGKQLILTSDRAPVLLQGIEERLLTRFKWGMVAELEKPTVELRKNILRN 309 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 + ++ YI + + S+ E +V + + I LA ++ Sbjct: 310 KIHRDGLQFPAEVIDYIAENVNESVRDLEGIVIAIMARSTIFNKEIDLDLAQHIVHGVVH 369 Query: 245 CD 246 + Sbjct: 370 NE 371 >gi|167766864|ref|ZP_02438917.1| hypothetical protein CLOSS21_01381 [Clostridium sp. SS2/1] gi|167711412|gb|EDS21991.1| hypothetical protein CLOSS21_01381 [Clostridium sp. SS2/1] Length = 444 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 40/269 (14%), Positives = 97/269 (36%), Gaps = 28/269 (10%) Query: 2 NLMKEDYSFFVPDKQKNDQPKNKEEQLFF--SFPRCLGISRDDLLVHSAIEQAVRL---I 56 +L + Y +++ ++P+ + + D ++ A + Sbjct: 75 DLTGKKYDIEFELEKEGEKPQETPAAAPEHDNNNLNPRYTFDTFVIGDNNRMAHAASIAV 134 Query: 57 DSWPSWPSRVVILVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDTRKP- 110 P+ + L G +G GK+ L + I S ++ + +I++ + Sbjct: 135 AEAPAEAYNPLFLYGGAGLGKTHLMHSIAHYIIEHNSSLNVLYVTSEDFTNEVINSIQHK 194 Query: 111 --------------VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 +L++DI + + + FH N+++ +++++ P V Sbjct: 195 KQEELRSKYRNIDVLLVDDIQFVIGKESTQQEFFHTFNALYNSKKQIILSSDKPPKELDV 254 Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213 L SR V I P+ + ++ K I+ID ++ YI ++ ++ E Sbjct: 255 LEERLRSRFSWGLPVDIQPPNYETKVAILRKRAELDNIYIDDEIFDYIATHIKSNIRDLE 314 Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++K+ + I L+ L++ Sbjct: 315 GALNKIKVYSKLNKKPIDLELSKIALQDL 343 >gi|62182326|ref|YP_218743.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|71151802|sp|Q57I00|DNAA_SALCH RecName: Full=Chromosomal replication initiator protein DnaA gi|62129959|gb|AAX67662.1| DNA replication initiator protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322716817|gb|EFZ08388.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 466 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 43/274 (15%), Positives = 101/274 (36%), Gaps = 39/274 (14%) Query: 8 YSFFVPDKQKNDQPKN-------------KEEQLFFSFPRCLGISRDDLLVHSAIEQAVR 54 ++ P + QP+ + + + + D+ + + + A Sbjct: 92 HNVVAPTQTTTAQPQRVAPAARSGWDNVPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARA 151 Query: 55 LIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSDKSRS--------TRFSNIAK 98 P + L G +G GK+ L + I + K + ++ K Sbjct: 152 AARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVK 211 Query: 99 SLDSILID-------TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFP 148 +L + I+ + +L++DI + + FH N++ + + +++T+ +P Sbjct: 212 ALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYP 271 Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 L SR V I P+ + +++K + I + ++A +I +R+ + Sbjct: 272 KEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLRSN 331 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + E ++++ A G IT E L++ Sbjct: 332 VRELEGALNRVIANANFTGRAITIDFVREALRDL 365 >gi|167036432|ref|YP_001664010.1| chromosomal replication initiation protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167038676|ref|YP_001661661.1| chromosomal replication initiation protein [Thermoanaerobacter sp. X514] gi|300913764|ref|ZP_07131081.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter sp. X561] gi|307723219|ref|YP_003902970.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter sp. X513] gi|320114858|ref|YP_004185017.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|226735859|sp|B0KAG0|DNAA_THEP3 RecName: Full=Chromosomal replication initiator protein DnaA gi|226735860|sp|B0K0W8|DNAA_THEPX RecName: Full=Chromosomal replication initiator protein DnaA gi|166852916|gb|ABY91325.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter sp. X514] gi|166855266|gb|ABY93674.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|300890449|gb|EFK85594.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter sp. X561] gi|307580280|gb|ADN53679.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter sp. X513] gi|319927949|gb|ADV78634.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 443 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 36/233 (15%), Positives = 91/233 (39%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD----- 86 + D +V ++ + A + P++ + + G G GK+ L + Sbjct: 109 NPKYTFDTFVVGNSNKLAHAACLAVAQAPAKAYNPLFIYGGVGLGKTHLMHAIGHFINKH 168 Query: 87 KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 +S +++ + L+++ K +L++DI + + + FH Sbjct: 169 QSGYKIMYVTSETFTNELVNSIKDDKNEEFRNKYRNIDVLLIDDIQFIAKKERTQEEFFH 228 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++++ + +++++ P L SR + + I PD + ++ K Sbjct: 229 TFNTLYEANKQIVISSDRPPKEIPTLEERLRSRFEWGLIADIQPPDYETRIAILKKKAQT 288 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I ++ AY+ ++++ ++ E + ++ + I LA LKE Sbjct: 289 ENLNIPDEVLAYVAEKIQSNIRELEGALIRIVAFSNLTKANIDLELAKHALKE 341 >gi|114565577|ref|YP_752731.1| initiation of chromosome replication [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114336512|gb|ABI67360.1| initiation of chromosome replication [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 436 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 85/237 (35%), Gaps = 26/237 (10%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWP---SRVVILVGPSGSGKSCLANIW------- 84 + D +V ++ A + P + + G G GK+ L Sbjct: 97 NPKYTFDTFVVGNSNRFAHAACYAVGESPFKSYNPLFIYGGVGLGKTHLMQAIGHHILSR 156 Query: 85 ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128 S++ + S+I S+ + + + L++DI L + + FH Sbjct: 157 KPNYLVMYVSSEQFTNDMISSIKDDTTSLFRNKYRSIDVLLVDDIQFLAGKERTQEEFFH 216 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H+ + +++++ P + L SR + + I PD + ++ K Sbjct: 217 TFNTLHESNKQVVISSDRPPRNIPTLEDRLRSRFEWGLITDIQPPDLETRIAILRKKAQG 276 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 + I + YI ++ ++ E + ++ A + + A E LK+ Sbjct: 277 ENLNIPYSVLDYIANYIDSNIRELEGALIRLVAFATINNKPLDMNTAVEALKDIMPP 333 >gi|315659995|ref|ZP_07912853.1| DNA-directed DNA replication initiator protein [Staphylococcus lugdunensis M23590] gi|315494896|gb|EFU83233.1| DNA-directed DNA replication initiator protein [Staphylococcus lugdunensis M23590] Length = 467 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 90/232 (38%), Gaps = 28/232 (12%) Query: 40 RDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW------------ 84 D ++ A + P+ + + G G GK+ L + Sbjct: 136 FDTFVIGPGNRFPHAASLAVAEAPAEAYNPLFIYGGVGLGKTHLMHAIGHHVLSNNPNAK 195 Query: 85 -----SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFHIINSI 133 S+K + +I + + + + L++DI + + + FH N + Sbjct: 196 VLYTSSEKFTNEFIKSIRDGENEAFREKYRNIDVLLIDDIQFIQNKEQTQEEFFHTFNEL 255 Query: 134 HQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 HQ + +++++ P L D L SR + +V I+ PD + ++ K + + Sbjct: 256 HQNNKQIVISSDRPPKEIA-KLEDRLRSRFEWGLIVDITPPDYETRMAILQKKMEEENLE 314 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 I + YI +++ ++ E + ++ + +G IT L AE LK+ Q Sbjct: 315 IPMEALNYIANQIQSNIRELEGALTRLLAYSQLQGRPITTELTAEALKDIIQ 366 >gi|289551834|ref|YP_003472738.1| Chromosomal replication initiator protein DnaA [Staphylococcus lugdunensis HKU09-01] gi|289181365|gb|ADC88610.1| Chromosomal replication initiator protein DnaA [Staphylococcus lugdunensis HKU09-01] Length = 455 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 90/232 (38%), Gaps = 28/232 (12%) Query: 40 RDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW------------ 84 D ++ A + P+ + + G G GK+ L + Sbjct: 124 FDTFVIGPGNRFPHAASLAVAEAPAEAYNPLFIYGGVGLGKTHLMHAIGHHVLSNNPNAK 183 Query: 85 -----SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFHIINSI 133 S+K + +I + + + + L++DI + + + FH N + Sbjct: 184 VLYTSSEKFTNEFIKSIRDGENEAFREKYRNIDVLLIDDIQFIQNKEQTQEEFFHTFNEL 243 Query: 134 HQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 HQ + +++++ P L D L SR + +V I+ PD + ++ K + + Sbjct: 244 HQNNKQIVISSDRPPKEIA-KLEDRLRSRFEWGLIVDITPPDYETRMAILQKKMEEENLE 302 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 I + YI +++ ++ E + ++ + +G IT L AE LK+ Q Sbjct: 303 IPMEALNYIANQIQSNIRELEGALTRLLAYSQLQGRPITTELTAEALKDIIQ 354 >gi|224585637|ref|YP_002639436.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224470165|gb|ACN47995.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 470 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + + D+ + + + A P + L G +G GK+ L + I + Sbjct: 135 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 194 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 195 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 254 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 255 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 314 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 315 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 369 >gi|304414287|ref|ZP_07395655.1| chromosomal replication initiator protein and DNA-binding transcriptional dual regulator [Candidatus Regiella insecticola LSR1] gi|304283501|gb|EFL91897.1| chromosomal replication initiator protein and DNA-binding transcriptional dual regulator [Candidatus Regiella insecticola LSR1] Length = 466 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 42/231 (18%), Positives = 93/231 (40%), Gaps = 26/231 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86 S D+ + + + A P + + L G +G GK+ L + I ++ Sbjct: 132 NTKHSFDNFVEGKSNQLARAAARQVADNPGKAYNPLFLYGCTGLGKTHLLHAVGNGIIAN 191 Query: 87 KSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLFH 128 KS++ ++ K+L + I+ + +L++DI + + FH Sbjct: 192 KSKAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSLDALLIDDIQFFSNKERSQEEFFH 251 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++ + + +++T+ +P L SR V I P+ + +++K + Sbjct: 252 TFNTLLEGNQQIILTSDRYPKEINGVADRLKSRFGWGLTVAIDPPELETRVAILMKKADE 311 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 I + ++A +I +R+ ++ E ++++ A G IT E L Sbjct: 312 NDIVLPNEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREAL 362 >gi|149278100|ref|ZP_01884239.1| chromosomal replication initiator protein [Pedobacter sp. BAL39] gi|149231298|gb|EDM36678.1| chromosomal replication initiator protein [Pedobacter sp. BAL39] Length = 477 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 44/260 (16%), Positives = 85/260 (32%), Gaps = 39/260 (15%) Query: 10 FFVPD-KQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPS- 64 F +P K+ N P QL + D + A + + P S Sbjct: 126 FVIPGLKKMNVDP-----QL------NANYTFDTFVEGDCNRLARSAGHAVSAKPGATSF 174 Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLD--------------------SIL 104 +++ G SG GK+ LA ++ R + L Sbjct: 175 NPLMIYGASGLGKTHLAQAIGNEIRQNLPDKLVIYLSCEKFCQQFVESLKNNTINDFVNF 234 Query: 105 IDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161 ++++DI + FHI N +HQ +++T+ P L SR Sbjct: 235 YQAMDVIIMDDIHNFAGKEKTQDIFFHIFNHLHQSGKQIIITSDKSPKDLTGLEERLLSR 294 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 K + +P+ + ++ K I + ++ Y+ ++ ++ E + + Sbjct: 295 FKWGLSADLQIPELETRIAILRKKMYADGIDLPDEVVEYVAHNIDNNVRELEGAMVSLLA 354 Query: 222 LALSRGMGITRSLAAEVLKE 241 + I LA +LK Sbjct: 355 QSTMNKKEIDLQLAKSMLKN 374 >gi|332996040|gb|EGK15667.1| chromosomal replication initiator protein DnaA [Shigella flexneri VA-6] Length = 444 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + + D+ + + + A P + L G +G GK+ L + I + Sbjct: 109 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 168 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 169 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 228 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 229 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 288 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 289 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 343 >gi|149912068|ref|ZP_01900659.1| chromosomal replication initiation protein [Moritella sp. PE36] gi|149804864|gb|EDM64901.1| chromosomal replication initiation protein [Moritella sp. PE36] Length = 460 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 38/248 (15%), Positives = 94/248 (37%), Gaps = 28/248 (11%) Query: 23 NKEEQLFFSF--PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGK 77 + +Q + L + ++ + + + A S P + L G +G GK Sbjct: 112 SSPQQPTINHRSNVNLTYTFENFVEGKSNQLARAAAQQVASNPGGAYNPLFLYGGTGLGK 171 Query: 78 SCLANIW-----SDKSRSTRF--------SNIAKSLDSILIDT-------RKPVLLEDID 117 + L + + K + ++ K+L + I+ +L++DI Sbjct: 172 THLLHAVGNGIKAQKPNAKVIYMHSERFVQDMVKALQNNAIEAFKNYYRSVDALLIDDIQ 231 Query: 118 LLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 + + FH N++ + + +++T+ +P L SR + I P+ Sbjct: 232 FFAKKERSQEEFFHTFNALLEGNQQIILTSDRYPKEIDGVEDRLKSRFGWGLTIAIEPPE 291 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234 + ++++ + I + ++A +I +R+ ++ E ++++ A G I Sbjct: 292 LETRVAILMRKAVESNIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAINIDF 351 Query: 235 AAEVLKET 242 E L++ Sbjct: 352 VREALRDL 359 >gi|302341687|ref|YP_003806216.1| chromosomal replication initiator protein DnaA [Desulfarculus baarsii DSM 2075] gi|301638300|gb|ADK83622.1| chromosomal replication initiator protein DnaA [Desulfarculus baarsii DSM 2075] Length = 457 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 36/231 (15%), Positives = 93/231 (40%), Gaps = 26/231 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI-----WSD 86 G + + +V + E A + P R +++ G +G GK+ L + + Sbjct: 118 KPGYTFETFIVGTCNELAHAACRAVAQQPGRQYNPLLIFGGAGLGKTHLLHAVGNAFYQR 177 Query: 87 KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 R+ ++ + LI + +LL+DI L + +LFH Sbjct: 178 DPRAKVLYTTCEAFTNELIQAVRFDSIGRFQEKYRGLDCLLLDDIQFLAGRERTQEELFH 237 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++ + +++T+ P + L +R + + P + + ++ Sbjct: 238 TFNALQESGGQIVLTSDDPPRELQGVVKRLRTRFEGGLTADLQPPPSEIMVAILQSKALA 297 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + + + ++A ++ ++ E ++ E ++++ ++ +G+ +T LA V+ Sbjct: 298 KGMDLSDQVAMFLARQPESNVRVLEGYLNRIIAVSRFQGVEVTLELARRVV 348 >gi|89074702|ref|ZP_01161160.1| chromosomal replication initiation protein [Photobacterium sp. SKA34] gi|89049466|gb|EAR55027.1| chromosomal replication initiation protein [Photobacterium sp. SKA34] Length = 466 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 91/235 (38%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLAN-----IWS 85 + ++ + + + + P + L G +G GK+ L + I + Sbjct: 131 VNPKHNFNNFVEGKSNQLGLAACRQVSDNPGAAYNPLFLYGGTGLGKTHLLHAVGNAIAN 190 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 191 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 250 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 251 HTFNALLEGNQQIILTSDRYPREINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAE 310 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 D I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 311 DHNIRLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 365 >gi|299769105|ref|YP_003731131.1| DnaA regulatory inactivator Hda [Acinetobacter sp. DR1] gi|298699193|gb|ADI89758.1| DnaA regulatory inactivator Hda [Acinetobacter sp. DR1] Length = 232 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 86/228 (37%), Gaps = 21/228 (9%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 QL L D + V + + + G +G+GKS L + Sbjct: 2 RQLQLDIEPQLDARISDF-SGPSWGNVVDAVRQLHAGLVSRFYIYGGAGTGKSHLLSAIC 60 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVL-LEDIDLLDFNDT-----------QLFHIINSI 133 D S I SL +L + + LE DL+ +D +FH++N Sbjct: 61 DSYLEVGKSAIKVSLLELLDAPIEAITSLEHYDLVALDDIESISGVPHWQKAVFHLMN-- 118 Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF---LEKVIVKMFADRQ 190 ++ L+ ++R P+ + LPDL SRL A VK+ P ++ + + R Sbjct: 119 -NHEGQLVFSSRVAPIELKLELPDLQSRLTQAVSVKV--PSGSLYADRYSLVTSVMSRRG 175 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238 I D+++ Y++ + V +++ L ++ + ++ Sbjct: 176 IHFDQQIVDYLLLHGPHQASLLLQTVAQLEKLLKGEKTKLSNATLRQI 223 >gi|293609874|ref|ZP_06692176.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828326|gb|EFF86689.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|325123102|gb|ADY82625.1| chromosomal replication initiator protein DnaA [Acinetobacter calcoaceticus PHEA-2] Length = 232 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 85/228 (37%), Gaps = 21/228 (9%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 QL L D V + + + G +G+GKS L + Sbjct: 2 RQLQLDIEPQLDARISDF-SGPGWGHVVDAVRQLHAGLVSRFYIYGGAGTGKSHLLSAIC 60 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVL-LEDIDLLDFNDT-----------QLFHIINSI 133 D S I SL +L + + LE DL+ +D +FH++N Sbjct: 61 DSYLEIGKSAIKVSLLELLDAPIEAITSLEHYDLVALDDIESISGVPHWQKAVFHLMN-- 118 Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF---LEKVIVKMFADRQ 190 ++ L+ ++R P+ + LPDL SRL A VK+ P ++ + A R Sbjct: 119 -NHEGQLVFSSRVAPIELKLELPDLQSRLTQAVSVKV--PSGSLYADRYALVTSVMARRG 175 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238 I D+++ Y++ + V +++ L ++ + ++ Sbjct: 176 IHFDQQIVDYLLLHGPHQASLLLQTVAQLEKLLKGEKTKLSNATLRQI 223 >gi|260595830|ref|YP_003208401.1| Chromosomal replication initiator protein dnaA [Cronobacter turicensis z3032] gi|260215007|emb|CBA26668.1| Chromosomal replication initiator protein dnaA [Cronobacter turicensis z3032] Length = 486 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + + D+ + + + A P + L G +G GK+ L + I + Sbjct: 151 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 210 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 211 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 270 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 271 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 330 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 331 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 385 >gi|16762487|ref|NP_458104.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143975|ref|NP_807317.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|197265269|ref|ZP_03165343.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|207859064|ref|YP_002245715.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213021809|ref|ZP_03336256.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213052696|ref|ZP_03345574.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213424952|ref|ZP_03357702.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213581270|ref|ZP_03363096.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213648784|ref|ZP_03378837.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289826405|ref|ZP_06545517.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|21362471|sp|Q8Z2N6|DNAA_SALTI RecName: Full=Chromosomal replication initiator protein DnaA gi|226735840|sp|B5QUQ0|DNAA_SALEP RecName: Full=Chromosomal replication initiator protein DnaA gi|25299855|pir||AI0957 chromosomal replication initiator protein [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504792|emb|CAD03157.1| chromosomal replication initiator protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29139611|gb|AAO71177.1| chromosomal replication initiator protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|197243524|gb|EDY26144.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|206710867|emb|CAR35231.1| chromosomal replication initiator protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 466 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 43/274 (15%), Positives = 101/274 (36%), Gaps = 39/274 (14%) Query: 8 YSFFVPDKQKNDQPKN-------------KEEQLFFSFPRCLGISRDDLLVHSAIEQAVR 54 ++ P + QP+ + + + + D+ + + + A Sbjct: 92 HNVVAPTQTTTAQPQRVAPAARSGWDNVPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARA 151 Query: 55 LIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSDKSRS--------TRFSNIAK 98 P + L G +G GK+ L + I + K + ++ K Sbjct: 152 AARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVK 211 Query: 99 SLDSILID-------TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFP 148 +L + I+ + +L++DI + + FH N++ + + +++T+ +P Sbjct: 212 ALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYP 271 Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 L SR V I P+ + +++K + I + ++A +I +R+ + Sbjct: 272 KEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLRSN 331 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + E ++++ A G IT E L++ Sbjct: 332 VRELEGALNRVIANANFTGRAITIDFVREALRDL 365 >gi|327395909|dbj|BAK13331.1| chromosomal replication initiator protein DnaA [Pantoea ananatis AJ13355] Length = 445 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 91/235 (38%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + D+ + + + A P + L G +G GK+ L + I + Sbjct: 110 VNNRHNFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIIA 169 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 170 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 229 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 230 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 289 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 290 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 344 >gi|152972609|ref|YP_001337755.1| chromosomal replication initiation protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|262040466|ref|ZP_06013709.1| DNA replication initiator protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|150957458|gb|ABR79488.1| chromosomal replication initiation protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|259042219|gb|EEW43247.1| DNA replication initiator protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 444 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + + D+ + + + A P + L G +G GK+ L + I + Sbjct: 109 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIVA 168 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 169 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 228 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 229 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 288 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 289 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 343 >gi|330752438|emb|CBL87388.1| chromosomal replication initiation protein [uncultured Flavobacteria bacterium] Length = 475 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 41/259 (15%), Positives = 92/259 (35%), Gaps = 37/259 (14%) Query: 10 FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66 F +P + E QL + ++ L + A + + P Sbjct: 125 FVIPGIRNV----KIESQL------NPIYTFENFLEGDSNRLARNAGIAVANKPGGTSFN 174 Query: 67 -VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTR 108 +++ G G GK+ LA+ ++K ++ K+ + I Sbjct: 175 PLLIFGGVGLGKTHLAHAIGVDIKDKYPEKTVLYISAEKFTQQYIESVKKNNRNDFIHFY 234 Query: 109 ---KPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 ++++D+ L FHI N +HQ +++T+ PV L SR Sbjct: 235 QIIDVLIIDDVQFLSGKSGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSRF 294 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 K ++ PD + ++ + + + + Y+ + ++ ++ E + + Sbjct: 295 KWGLSAELQKPDFETRVSIVKNKLYRDGVEMSEDVIEYVAKNIKTNVRELEGAIISLIAQ 354 Query: 223 ALSRGMGITRSLAAEVLKE 241 + IT LA E++++ Sbjct: 355 SSFNKKEITLGLAKEIVEK 373 >gi|110644045|ref|YP_671775.1| chromosomal replication initiator protein DnaA [Escherichia coli 536] gi|312972006|ref|ZP_07786180.1| chromosomal replication initiator protein DnaA [Escherichia coli 1827-70] gi|110345637|gb|ABG71874.1| chromosomal replication initiator protein DnaA [Escherichia coli 536] gi|310334383|gb|EFQ00588.1| chromosomal replication initiator protein DnaA [Escherichia coli 1827-70] gi|315138286|dbj|BAJ45445.1| chromosomal replication initiator protein DnaA [Escherichia coli DH1] gi|315618592|gb|EFU99178.1| chromosomal replication initiator protein DnaA [Escherichia coli 3431] gi|323161046|gb|EFZ46965.1| chromosomal replication initiator protein DnaA [Escherichia coli E128010] gi|323173320|gb|EFZ58949.1| chromosomal replication initiator protein DnaA [Escherichia coli LT-68] gi|323182497|gb|EFZ67901.1| chromosomal replication initiator protein DnaA [Escherichia coli 1357] gi|323189563|gb|EFZ74843.1| chromosomal replication initiator protein DnaA [Escherichia coli RN587/1] Length = 444 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + + D+ + + + A P + L G +G GK+ L + I + Sbjct: 109 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 168 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 169 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 228 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 229 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 288 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 289 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 343 >gi|323155378|gb|EFZ41561.1| chromosomal replication initiator protein DnaA [Escherichia coli EPECa14] Length = 444 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + + D+ + + + A P + L G +G GK+ L + I + Sbjct: 109 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 168 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 169 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 228 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 229 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 288 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 289 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 343 >gi|323496927|ref|ZP_08101955.1| chromosomal replication initiation protein [Vibrio sinaloensis DSM 21326] gi|323318001|gb|EGA70984.1| chromosomal replication initiation protein [Vibrio sinaloensis DSM 21326] Length = 468 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 90/235 (38%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--- 87 ++ + + + A R + P + L G +G GK+ L + + Sbjct: 133 VNPKHKFNNFVEGKSNQLGLAAARQVSDNPGSAYNPLFLYGGTGLGKTHLLHAVGNAIVD 192 Query: 88 ----------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 ++ K+L + I+ + +L++DI + + F Sbjct: 193 NKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 252 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 253 HTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAE 312 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 D QI + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 313 DHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 367 >gi|205354575|ref|YP_002228376.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|226735841|sp|B5RFY7|DNAA_SALG2 RecName: Full=Chromosomal replication initiator protein DnaA gi|205274356|emb|CAR39381.1| chromosomal replication initiator protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326629711|gb|EGE36054.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 466 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + + D+ + + + A P + L G +G GK+ L + I + Sbjct: 131 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 190 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 191 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 250 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 251 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 310 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 311 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 365 >gi|197334133|ref|YP_002154781.1| chromosomal replication initiator protein DnaA [Vibrio fischeri MJ11] gi|197315623|gb|ACH65070.1| chromosomal replication initiator protein DnaA [Vibrio fischeri MJ11] Length = 446 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 38/242 (15%), Positives = 87/242 (35%), Gaps = 30/242 (12%) Query: 31 SFPRC----LGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANI 83 + + + + + P + L G +G GK+ L + Sbjct: 104 DLNHRSNVNPKHKFTNFVEGKSNQLGLAAARQVSDNPGTAYNPLFLYGGTGLGKTHLLHA 163 Query: 84 WSDK-------------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND 123 + ++ K+L + I+ + +L++DI + Sbjct: 164 VGNAIVDSKPDARVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKE 223 Query: 124 ---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 + FH N++ + + +++T+ +P L SR V I P+ + Sbjct: 224 RSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVA 283 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 +++K D QI + ++A +I +R+ ++ E ++++ A G IT E L+ Sbjct: 284 ILMKKAEDHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALR 343 Query: 241 ET 242 + Sbjct: 344 DL 345 >gi|158319060|ref|YP_001511567.1| chromosomal replication initiation protein [Alkaliphilus oremlandii OhILAs] gi|167016896|sp|A8MEA0|DNAA_ALKOO RecName: Full=Chromosomal replication initiator protein DnaA gi|158139259|gb|ABW17571.1| chromosomal replication initiator protein DnaA [Alkaliphilus oremlandii OhILAs] Length = 451 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 93/234 (39%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLAN-----IWSD 86 + D ++ ++ A + P+ + L G G GK+ L + I + Sbjct: 116 NPKYTFDTFVIGNSNRFAHAASLAVAESPAKAYNPLFLYGGVGLGKTHLMHAIGHFILQN 175 Query: 87 KSRSTRFSNIAKSLDSILIDTRKP---------------VLLEDIDLLDFND---TQLFH 128 ++ +++ + LI++ + +L++DI + + + FH Sbjct: 176 NPKAKVVYVSSETFTNELINSIRHDRNVEFRNRFRTIDVLLVDDIQFIAGKESTQEEFFH 235 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H+ + +++++ P L SR + + I PD + ++ K Sbjct: 236 TFNALHESNKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDIQPPDLETRIAILYKKAQM 295 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 I + ++ +I ++++ ++ E + ++ + IT LA+E LKE Sbjct: 296 ENIDVPNEVLTHIAKKIQSNIRELEGALIRIVAYSSLTNSEITVELASEALKEL 349 >gi|290550|gb|AAA62053.1| dnaA (CG Site No. 851) [Escherichia coli] Length = 471 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 91/235 (38%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + + D+ + + + A P + L G +G GK+ L + I + Sbjct: 136 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 195 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 196 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 255 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N + + + +++T+ +P L SR V I P+ + +++K Sbjct: 256 HTFNXLLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 315 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 316 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 370 >gi|332750523|gb|EGJ80932.1| chromosomal replication initiator protein DnaA [Shigella flexneri K-671] gi|332764073|gb|EGJ94310.1| chromosomal replication initiator protein DnaA [Shigella flexneri 2930-71] Length = 444 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + + D+ + + + A P + L G +G GK+ L + I + Sbjct: 109 VNVKHTFDNFVEGKSNQLARAAACQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 168 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 169 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 228 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 229 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 288 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 289 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 343 >gi|329297781|ref|ZP_08255117.1| chromosomal replication initiation protein [Plautia stali symbiont] Length = 467 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 91/229 (39%), Gaps = 26/229 (11%) Query: 40 RDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSDKSRS- 90 D+ + + + A PS + L G +G GK+ L + I + K + Sbjct: 138 FDNFVEGKSNQLARAAARQVADNPSGAYNPLFLYGGTGLGKTHLLHAVGNGIIARKPNAK 197 Query: 91 -------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLFHIINSI 133 ++ K+L + I+ + +L++DI + + FH N++ Sbjct: 198 VVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNAL 257 Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193 + + +++T+ +P L SR V I P+ + +++K + I + Sbjct: 258 LEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKADENDIRL 317 Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 318 PGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 366 >gi|198245954|ref|YP_002217788.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|226735839|sp|B5FN10|DNAA_SALDC RecName: Full=Chromosomal replication initiator protein DnaA gi|197940470|gb|ACH77803.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 466 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + + D+ + + + A P + L G +G GK+ L + I + Sbjct: 131 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 190 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 191 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 250 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 251 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 310 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 311 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 365 >gi|161505631|ref|YP_001572743.1| chromosomal replication initiation protein [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866978|gb|ABX23601.1| hypothetical protein SARI_03807 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 469 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + + D+ + + + A P + L G +G GK+ L + I + Sbjct: 134 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 193 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 194 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 253 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 254 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 313 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 314 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 368 >gi|312142409|ref|YP_003993855.1| chromosomal replication initiator protein DnaA [Halanaerobium sp. 'sapolanicus'] gi|311903060|gb|ADQ13501.1| chromosomal replication initiator protein DnaA [Halanaerobium sp. 'sapolanicus'] Length = 473 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 39/236 (16%), Positives = 85/236 (36%), Gaps = 26/236 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWS------ 85 + D +V ++ A + P++ + + G G GK+ L + Sbjct: 135 NPKYTFDTFVVGNSNRFAHAASLAVAEAPAKAYNPLFIYGDVGLGKTHLMQAIAHFILKN 194 Query: 86 -----------DKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128 + + ++I D + + L++DI L + + FH Sbjct: 195 NPDYKVVYVSSETFTNELINSIKDDSTVDFRDKYRNIDILLVDDIQFLAGKERTQEEFFH 254 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H+ + L++++ P L SR + + I PD + ++ K Sbjct: 255 TFNTLHESNRQLIISSDRPPKEIPTLEERLRSRFEWGLITDIQKPDLETRIAILRKKADI 314 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 + I ++ YI +++ ++ E + K+ + I LA E LK+ Sbjct: 315 ENLTIPNEVVIYIANKIQSNIRELEGALVKVIAYSSLVDREIDIELAREALKDLVN 370 >gi|188535562|ref|YP_001909359.1| Chromosomal replication initiator protein [Erwinia tasmaniensis Et1/99] gi|226735811|sp|B2VCE3|DNAA_ERWT9 RecName: Full=Chromosomal replication initiator protein DnaA gi|188030604|emb|CAO98499.1| Chromosomal replication initiator protein [Erwinia tasmaniensis Et1/99] Length = 463 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 43/263 (16%), Positives = 96/263 (36%), Gaps = 33/263 (12%) Query: 13 PDKQKNDQPKNKE-------EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSR 65 P P +L + + D+ + + + A P Sbjct: 100 PGVVSRPAPTRPSWDNVPALAELSYRSNVNTKHNFDNFVEGKSNQLARAAARQVADNPGG 159 Query: 66 V---VILVGPSGSGKSCLAN-----IWSDKSRS--------TRFSNIAKSLDSILID--- 106 + L G +G GK+ L + I + K + ++ K+L + I+ Sbjct: 160 AYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFK 219 Query: 107 ----TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC 159 + +L++DI + + FH N++ + + +++T+ +P L Sbjct: 220 RYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLK 279 Query: 160 SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 SR V I P+ + +++K + I + ++A +I +R+ ++ E ++++ Sbjct: 280 SRFGWGLTVAIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRV 339 Query: 220 DNLALSRGMGITRSLAAEVLKET 242 A G IT E L++ Sbjct: 340 IANANFTGRAITIDFVREALRDL 362 >gi|296271546|ref|YP_003654177.1| chromosomal replication initiator protein DnaA [Arcobacter nitrofigilis DSM 7299] gi|296095721|gb|ADG91671.1| chromosomal replication initiator protein DnaA [Arcobacter nitrofigilis DSM 7299] Length = 437 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 39/232 (16%), Positives = 86/232 (37%), Gaps = 24/232 (10%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWS----DK 87 + D +V S+ + A + P + + G +G GK+ L + Sbjct: 103 NPSYTFDSFVVGSSNQMAFNASLAVSKKPGIQYNPLFIYGGTGLGKTHLLQAIGNDAIEH 162 Query: 88 SRSTRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDFND---TQLFHII 130 R+ + I + ++ + +L++DI L + + FH Sbjct: 163 GRTIIYVTIEQFMNDFTFAIKNKNMEHFRSKYRKCDVLLIDDIQFLSGKEQTQEEFFHTF 222 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N +H + ++MT+ P + L SR + + +P + +I K Sbjct: 223 NELHNAEKQIVMTSDRLPSQIAGLVDRLKSRFEWGLTADVQIPGLETKIAIIEKKSELNG 282 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 I +++++ YI ++ S+ E ++ +++ A I + +LKE Sbjct: 283 IHLEREIVNYIATNLDNSIREIEGVLIRINASAALLNQEINLPMVQNLLKEQ 334 >gi|78221229|ref|YP_382976.1| chromosomal replication initiation protein [Geobacter metallireducens GS-15] gi|123742956|sp|Q39ZS3|DNAA_GEOMG RecName: Full=Chromosomal replication initiator protein DnaA gi|78192484|gb|ABB30251.1| chromosomal replication initiator protein, DnaA [Geobacter metallireducens GS-15] Length = 450 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 41/238 (17%), Positives = 90/238 (37%), Gaps = 26/238 (10%) Query: 30 FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD 86 FS + D + + + A S + P+ + + G G GK+ L + Sbjct: 111 FSTNLNAKYTFDTFVCGGSNQFAHAAALSVANNPAGKYNPLFIYGGVGLGKTHLLTAIGN 170 Query: 87 KS-----RSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLLDFND--- 123 + ++ ++ + LI+ +L++DI + + Sbjct: 171 QVLTKNRKARVCFYTSEKFMNELINCLRYQKMEQFRNKFRKMDLLLIDDIQFIAGKERTQ 230 Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 + FH N++++ +++T+ FP L SR + + I PD + ++ Sbjct: 231 EEFFHTFNALYESHKQIVVTSDKFPKDIPGLEERLRSRFEWGLIADIQPPDTETKVAILS 290 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 K I + +A ++ ++ E ++ ++ +A G IT +A EVLK+ Sbjct: 291 KKADSDGIRLPDDVALFLASSASTNVRELEGMLIRLGAVASLTGKNITLDMAREVLKD 348 >gi|158834349|gb|ABW81974.1| transcriptional dual regulator [Candidatus Hamiltonella defensa] Length = 306 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 93/229 (40%), Gaps = 26/229 (11%) Query: 40 RDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLAN-----IWSDKSRS- 90 D + + + A + P + L G +G GK+ L + I + K+++ Sbjct: 51 FDTFVEGKSNQLARAAAIQVSGNPGAAYNPLFLYGDTGLGKTHLLHAVGNGIIAHKTKAK 110 Query: 91 -------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLFHIINSI 133 ++ K+L + I+ + +L++DI + + FH N++ Sbjct: 111 VVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNAL 170 Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193 + + +++T+ +P L SR V I+ P+ + +++K + I + Sbjct: 171 LEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIAPPELETRVAILMKKADENNIRL 230 Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++A +I +R+ ++ E ++++ A G IT + L++ Sbjct: 231 PGEVAFFIAKRLRSNVRELEGALNRVMANANFTGKAITIDFVRDALRDL 279 >gi|167748043|ref|ZP_02420170.1| hypothetical protein ANACAC_02781 [Anaerostipes caccae DSM 14662] gi|317472418|ref|ZP_07931743.1| chromosomal replication initiator protein DnaA [Anaerostipes sp. 3_2_56FAA] gi|167652523|gb|EDR96652.1| hypothetical protein ANACAC_02781 [Anaerostipes caccae DSM 14662] gi|316900138|gb|EFV22127.1| chromosomal replication initiator protein DnaA [Anaerostipes sp. 3_2_56FAA] Length = 447 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 45/265 (16%), Positives = 96/265 (36%), Gaps = 27/265 (10%) Query: 9 SFFVPDKQKNDQPKNKEE-QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP---S 64 SF + + +K P ++ + QL S + D +V + + A + P Sbjct: 84 SFVLEEAKKKKAPASRTDTQLQDSNNLNPRYTFDSFVVGTNNQMAHAACIAVAEAPAEAY 143 Query: 65 RVVILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPV----------- 111 + L G +G GK+ L + + +++ + + + + + Sbjct: 144 NPLFLYGGAGLGKTHLMHSIAHYIMENNSKLKVLYVTSEDFTNEVINAIHHNKQEELRNK 203 Query: 112 -------LLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161 L++DI + D + FH N+++ S +++++ P L +R Sbjct: 204 YRTIDVLLIDDIQFIIGKDSTQQEFFHTFNALYNSKSQIIISSDKPPKEIETLEERLRTR 263 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 I PD + ++ K I+ID + YI ++ ++ E ++K+ Sbjct: 264 FGCGLTADIQPPDYETRIAILRKRAELDHIYIDDAIFDYIASNIKSNIRELEGALNKIRV 323 Query: 222 LALSRGMGITRSLAAEVLKETQQCD 246 + I LA LK+ D Sbjct: 324 YSKLEKRPIDLDLAKIALKDLVDND 348 >gi|312882235|ref|ZP_07741981.1| chromosomal replication initiation protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309370079|gb|EFP97585.1| chromosomal replication initiation protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 468 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 88/235 (37%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDK--- 87 ++ + + + + P + L G +G GK+ L + + Sbjct: 133 VNPKHMFNNFVEGKSNQLGLAAAKQVSDNPGSAYNPLFLYGGTGLGKTHLLHAVGNAIVD 192 Query: 88 ----------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 ++ K+L + I+ + +L++DI + + F Sbjct: 193 NKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 252 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 253 HTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAE 312 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 D QI + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 313 DHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 367 >gi|300940887|ref|ZP_07155414.1| replication initiator protein DnaA [Escherichia coli MS 21-1] gi|300454368|gb|EFK17861.1| replication initiator protein DnaA [Escherichia coli MS 21-1] Length = 471 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + + D+ + + + A P + L G +G GK+ L + I + Sbjct: 136 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 195 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 196 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 255 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 256 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 315 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 316 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 370 >gi|157144344|ref|YP_001451663.1| hypothetical protein CKO_00048 [Citrobacter koseri ATCC BAA-895] gi|157081549|gb|ABV11227.1| hypothetical protein CKO_00048 [Citrobacter koseri ATCC BAA-895] Length = 444 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + + D+ + + + A P + L G +G GK+ L + I + Sbjct: 109 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 168 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 169 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 228 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 229 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 288 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 289 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 343 >gi|269103820|ref|ZP_06156517.1| chromosomal replication initiator protein dnaA [Photobacterium damselae subsp. damselae CIP 102761] gi|268163718|gb|EEZ42214.1| chromosomal replication initiator protein dnaA [Photobacterium damselae subsp. damselae CIP 102761] Length = 474 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 90/235 (38%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANI----WSD 86 + ++ + + + + P + L G +G GK+ L + +D Sbjct: 139 VNPKHNFNNFVEGKSNQLGLAACRQVADNPGAAYNPLFLYGGTGLGKTHLLHAVGNAIAD 198 Query: 87 K---------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 + ++ K+L + I+ + +L++DI + + F Sbjct: 199 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 258 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 259 HTFNALLEGNQQIILTSDRYPREINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAE 318 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 D I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 319 DHNIRLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 373 >gi|291615643|ref|YP_003518385.1| DnaA [Pantoea ananatis LMG 20103] gi|291150673|gb|ADD75257.1| DnaA [Pantoea ananatis LMG 20103] Length = 472 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 91/235 (38%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + D+ + + + A P + L G +G GK+ L + I + Sbjct: 137 VNNRHNFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIIA 196 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 197 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 256 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 257 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 316 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 317 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 371 >gi|158834311|gb|ABW81955.1| transcriptional dual regulator [Candidatus Hamiltonella defensa] gi|158834313|gb|ABW81956.1| transcriptional dual regulator [Candidatus Hamiltonella defensa] gi|158834315|gb|ABW81957.1| transcriptional dual regulator [Candidatus Hamiltonella defensa] gi|158834317|gb|ABW81958.1| transcriptional dual regulator [Candidatus Hamiltonella defensa] gi|158834321|gb|ABW81960.1| transcriptional dual regulator [Candidatus Hamiltonella defensa] gi|158834323|gb|ABW81961.1| transcriptional dual regulator [Candidatus Hamiltonella defensa] Length = 306 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 93/229 (40%), Gaps = 26/229 (11%) Query: 40 RDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLAN-----IWSDKSRS- 90 D + + + A + P + L G +G GK+ L + I + K+++ Sbjct: 51 FDTFVEGKSNQLARAAAIQVSGNPGAAYNPLFLYGDTGLGKTHLLHAVGNGIIAHKTKAK 110 Query: 91 -------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLFHIINSI 133 ++ K+L + I+ + +L++DI + + FH N++ Sbjct: 111 VVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNAL 170 Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193 + + +++T+ +P L SR V I+ P+ + +++K + I + Sbjct: 171 LEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIAPPELETRVAILMKKADENNIRL 230 Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++A +I +R+ ++ E ++++ A G IT + L++ Sbjct: 231 PGEVAFFIAKRLRSNVRELEGALNRVMANANFTGKAITIDFVRDALRDL 279 >gi|156936082|ref|YP_001439998.1| hypothetical protein ESA_03976 [Cronobacter sakazakii ATCC BAA-894] gi|156534336|gb|ABU79162.1| hypothetical protein ESA_03976 [Cronobacter sakazakii ATCC BAA-894] Length = 438 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + + D+ + + + A P + L G +G GK+ L + I + Sbjct: 103 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 162 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 163 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 222 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 223 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 282 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 283 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 337 >gi|310765874|gb|ADP10824.1| Chromosomal replication initiator protein [Erwinia sp. Ejp617] Length = 463 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 43/263 (16%), Positives = 96/263 (36%), Gaps = 33/263 (12%) Query: 13 PDKQKNDQPKNKE-------EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSR 65 P P +L + + D+ + + + A P Sbjct: 100 PGVISRPAPMRPSWDNVPALAELSYRSNVNTRHNFDNFVEGKSNQLARAAARQVADNPGG 159 Query: 66 V---VILVGPSGSGKSCLAN-----IWSDKSRS--------TRFSNIAKSLDSILID--- 106 + L G +G GK+ L + I + K + ++ K+L + I+ Sbjct: 160 AYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFK 219 Query: 107 ----TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC 159 + +L++DI + + FH N++ + + +++T+ +P L Sbjct: 220 RYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLK 279 Query: 160 SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 SR V I P+ + +++K + I + ++A +I +R+ ++ E ++++ Sbjct: 280 SRFGWGLTVAIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRV 339 Query: 220 DNLALSRGMGITRSLAAEVLKET 242 A G IT E L++ Sbjct: 340 IANANFTGRAITIDFVREALRDL 362 >gi|90413732|ref|ZP_01221720.1| chromosomal replication initiation protein [Photobacterium profundum 3TCK] gi|90325201|gb|EAS41698.1| chromosomal replication initiation protein [Photobacterium profundum 3TCK] Length = 474 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 37/235 (15%), Positives = 90/235 (38%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANI----WSD 86 + ++ + + + + P + L G +G GK+ L + +D Sbjct: 139 VNPKHNFNNFVEGKSNQLGLAACRQVSDNPGAAYNPLFLYGGTGLGKTHLLHAVGNAIAD 198 Query: 87 K---------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 + ++ K+L + I+ + +L++DI + + F Sbjct: 199 RKPNARVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 258 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 259 HTFNALLEGNQQIILTSDRYPREINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAE 318 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 319 NHNIRLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 373 >gi|320666234|gb|EFX33240.1| chromosomal replication initiation protein [Escherichia coli O157:H7 str. LSU-61] Length = 467 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + + D+ + + + A P + L G +G GK+ L + I + Sbjct: 132 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 191 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 192 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 251 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 252 HTFNALLEGNQQIILTSDRYPKEINGVEERLKSRFGWGLTVAIEPPELETRVAILMKKAD 311 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 312 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 366 >gi|290511689|ref|ZP_06551057.1| chromosomal replication initiator protein DnaA [Klebsiella sp. 1_1_55] gi|289775479|gb|EFD83479.1| chromosomal replication initiator protein DnaA [Klebsiella sp. 1_1_55] Length = 471 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + + D+ + + + A P + L G +G GK+ L + I + Sbjct: 136 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIVA 195 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 196 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 255 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 256 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 315 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 316 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 370 >gi|206580988|ref|YP_002235886.1| chromosomal replication initiator protein DnaA [Klebsiella pneumoniae 342] gi|288932893|ref|YP_003436952.1| chromosomal replication initiator protein DnaA [Klebsiella variicola At-22] gi|226735819|sp|B5XT51|DNAA_KLEP3 RecName: Full=Chromosomal replication initiator protein DnaA gi|206570046|gb|ACI11822.1| chromosomal replication initiator protein DnaA [Klebsiella pneumoniae 342] gi|288887622|gb|ADC55940.1| chromosomal replication initiator protein DnaA [Klebsiella variicola At-22] Length = 467 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + + D+ + + + A P + L G +G GK+ L + I + Sbjct: 132 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIVA 191 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 192 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 251 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 252 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 311 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 312 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 366 >gi|314935201|ref|ZP_07842554.1| ATPase involved in DNA replication initiation [Staphylococcus hominis subsp. hominis C80] gi|313656536|gb|EFS20275.1| ATPase involved in DNA replication initiation [Staphylococcus hominis subsp. hominis C80] Length = 450 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 91/232 (39%), Gaps = 28/232 (12%) Query: 40 RDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW-----SDKSRST 91 D ++ A + P+ + + G G GK+ L + S+K + Sbjct: 119 FDTFVIGPGNRFPHAASLAVAEAPAQAYNPLFIYGGVGLGKTHLMHAIGHHVLSNKPNAK 178 Query: 92 RFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINSI 133 ++ + I + + +L++DI + + + FH N + Sbjct: 179 VLYTSSEKFTNDFIKSIRNNEPEAFREKYRNIDVLLIDDIQFIQNKEQTQEEFFHTFNEL 238 Query: 134 HQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 HQ +++++ P L D L SR + +V I+ PD + ++ K + + Sbjct: 239 HQNKKQIVISSDRPPKEIA-KLEDRLRSRFEWGLIVDITPPDYETRMAILQKKIEEENLE 297 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 I + YI +++ ++ E + ++ + +G IT LAAE LK+ Q Sbjct: 298 IPAEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPITTELAAEALKDIIQ 349 >gi|228474142|ref|ZP_04058879.1| chromosomal replication initiator protein DnaA [Staphylococcus hominis SK119] gi|228271837|gb|EEK13174.1| chromosomal replication initiator protein DnaA [Staphylococcus hominis SK119] Length = 450 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 91/232 (39%), Gaps = 28/232 (12%) Query: 40 RDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW-----SDKSRST 91 D ++ A + P+ + + G G GK+ L + S+K + Sbjct: 119 FDTFVIGPGNRFPHAASLAVAEAPAQAYNPLFIYGGVGLGKTHLMHAIGHHVLSNKPNAK 178 Query: 92 RFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINSI 133 ++ + I + + +L++DI + + + FH N + Sbjct: 179 VLYTSSEKFTNDFIKSIRNNEPEAFREKYRNIDVLLIDDIQFIQNKEQTQEEFFHTFNEL 238 Query: 134 HQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 HQ +++++ P L D L SR + +V I+ PD + ++ K + + Sbjct: 239 HQNKKQIVISSDRPPKEIA-KLEDRLRSRFEWGLIVDITPPDYETRMAILQKKIEEENLE 297 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 I + YI +++ ++ E + ++ + +G IT LAAE LK+ Q Sbjct: 298 IPAEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPITTELAAEALKDIIQ 349 >gi|59710616|ref|YP_203392.1| chromosomal replication initiation protein [Vibrio fischeri ES114] gi|71151809|sp|Q5E8Z2|DNAA_VIBF1 RecName: Full=Chromosomal replication initiator protein DnaA gi|59478717|gb|AAW84504.1| chromosomal replication initiator protein DnaA [Vibrio fischeri ES114] Length = 469 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 38/242 (15%), Positives = 87/242 (35%), Gaps = 30/242 (12%) Query: 31 SFPRC----LGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANI 83 + + + + + P + L G +G GK+ L + Sbjct: 127 DLNHRSNVNPKHKFTNFVEGKSNQLGLAAARQVSDNPGTAYNPLFLYGGTGLGKTHLLHA 186 Query: 84 WSDK-------------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND 123 + ++ K+L + I+ + +L++DI + Sbjct: 187 VGNAIVDSKPDARVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKE 246 Query: 124 ---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 + FH N++ + + +++T+ +P L SR V I P+ + Sbjct: 247 RSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVA 306 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 +++K D QI + ++A +I +R+ ++ E ++++ A G IT E L+ Sbjct: 307 ILMKKAEDHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALR 366 Query: 241 ET 242 + Sbjct: 367 DL 368 >gi|15804296|ref|NP_290335.1| chromosomal replication initiation protein [Escherichia coli O157:H7 EDL933] gi|15833891|ref|NP_312664.1| chromosomal replication initiation protein [Escherichia coli O157:H7 str. Sakai] gi|168748582|ref|ZP_02773604.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC4113] gi|168753591|ref|ZP_02778598.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC4401] gi|168759888|ref|ZP_02784895.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC4501] gi|168772263|ref|ZP_02797270.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC4196] gi|168779924|ref|ZP_02804931.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC4076] gi|168786532|ref|ZP_02811539.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC869] gi|168798737|ref|ZP_02823744.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC508] gi|195936323|ref|ZP_03081705.1| chromosomal replication initiation protein [Escherichia coli O157:H7 str. EC4024] gi|208807676|ref|ZP_03250013.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC4206] gi|208811867|ref|ZP_03253196.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC4045] gi|208819691|ref|ZP_03260011.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC4042] gi|209395729|ref|YP_002273228.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC4115] gi|217325750|ref|ZP_03441834.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. TW14588] gi|254795705|ref|YP_003080542.1| chromosomal replication initiation protein [Escherichia coli O157:H7 str. TW14359] gi|261225855|ref|ZP_05940136.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli O157:H7 str. FRIK2000] gi|261258900|ref|ZP_05951433.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli O157:H7 str. FRIK966] gi|291285121|ref|YP_003501939.1| Chromosomal replication initiator protein dnaA [Escherichia coli O55:H7 str. CB9615] gi|21362461|sp|Q8XBZ3|DNAA_ECO57 RecName: Full=Chromosomal replication initiator protein DnaA gi|226735804|sp|B5YXA4|DNAA_ECO5E RecName: Full=Chromosomal replication initiator protein DnaA gi|12518541|gb|AAG58899.1|AE005601_5 DNA biosynthesis; initiation of chromosome replication; can be transcription regulator [Escherichia coli O157:H7 str. EDL933] gi|13364112|dbj|BAB38060.1| replication initiation protein DnaA [Escherichia coli O157:H7 str. Sakai] gi|187771794|gb|EDU35638.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC4196] gi|188016856|gb|EDU54978.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC4113] gi|189002469|gb|EDU71455.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC4076] gi|189358966|gb|EDU77385.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC4401] gi|189369914|gb|EDU88330.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC4501] gi|189373439|gb|EDU91855.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC869] gi|189378776|gb|EDU97192.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC508] gi|208727477|gb|EDZ77078.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC4206] gi|208733144|gb|EDZ81831.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC4045] gi|208739814|gb|EDZ87496.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC4042] gi|209157129|gb|ACI34562.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC4115] gi|209754108|gb|ACI75361.1| 50S ribosomal subunit protein L34 [Escherichia coli] gi|209754110|gb|ACI75362.1| 50S ribosomal subunit protein L34 [Escherichia coli] gi|209754112|gb|ACI75363.1| 50S ribosomal subunit protein L34 [Escherichia coli] gi|209754114|gb|ACI75364.1| 50S ribosomal subunit protein L34 [Escherichia coli] gi|209754116|gb|ACI75365.1| 50S ribosomal subunit protein L34 [Escherichia coli] gi|217321971|gb|EEC30395.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. TW14588] gi|254595105|gb|ACT74466.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli O157:H7 str. TW14359] gi|290764994|gb|ADD58955.1| Chromosomal replication initiator protein dnaA [Escherichia coli O55:H7 str. CB9615] gi|320191198|gb|EFW65848.1| Chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC1212] gi|320639427|gb|EFX09042.1| chromosomal replication initiation protein [Escherichia coli O157:H7 str. G5101] gi|320644870|gb|EFX13906.1| chromosomal replication initiation protein [Escherichia coli O157:H- str. 493-89] gi|320650134|gb|EFX18630.1| chromosomal replication initiation protein [Escherichia coli O157:H- str. H 2687] gi|320655482|gb|EFX23417.1| chromosomal replication initiation protein [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661108|gb|EFX28544.1| chromosomal replication initiation protein [Escherichia coli O55:H7 str. USDA 5905] gi|326337249|gb|EGD61084.1| Chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. 1044] gi|326341620|gb|EGD65409.1| Chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. 1125] Length = 467 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + + D+ + + + A P + L G +G GK+ L + I + Sbjct: 132 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 191 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 192 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 251 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 252 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 311 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 312 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 366 >gi|323493781|ref|ZP_08098899.1| chromosomal replication initiation protein [Vibrio brasiliensis LMG 20546] gi|323311915|gb|EGA65061.1| chromosomal replication initiation protein [Vibrio brasiliensis LMG 20546] Length = 468 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 89/235 (37%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--- 87 + + + + A R + P + L G +G GK+ L + + Sbjct: 133 VNPKHKFTNFVEGKSNQLGLAAARQVSDNPGSAYNPLFLYGGTGLGKTHLLHAVGNAIVD 192 Query: 88 ----------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 ++ K+L + I+ + +L++DI + + F Sbjct: 193 NKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 252 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 253 HTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAE 312 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 D QI + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 313 DHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 367 >gi|292490136|ref|YP_003533031.1| chromosomal replication initiator protein dnaA [Erwinia amylovora CFBP1430] gi|292901140|ref|YP_003540509.1| chromosomal replication initiator protein [Erwinia amylovora ATCC 49946] gi|291200988|emb|CBJ48127.1| chromosomal replication initiator protein [Erwinia amylovora ATCC 49946] gi|291555578|emb|CBA24173.1| Chromosomal replication initiator protein dnaA [Erwinia amylovora CFBP1430] gi|312174329|emb|CBX82582.1| Chromosomal replication initiator protein dnaA [Erwinia amylovora ATCC BAA-2158] Length = 463 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 43/263 (16%), Positives = 96/263 (36%), Gaps = 33/263 (12%) Query: 13 PDKQKNDQPKNKE-------EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSR 65 P P +L + + D+ + + + A P Sbjct: 100 PGVVSRPAPTRPSWDNAPALAELSYRSNVNTRHNFDNFVEGKSNQLARAAARQVADNPGG 159 Query: 66 V---VILVGPSGSGKSCLAN-----IWSDKSRS--------TRFSNIAKSLDSILID--- 106 + L G +G GK+ L + I + K + ++ K+L + I+ Sbjct: 160 AYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFK 219 Query: 107 ----TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC 159 + +L++DI + + FH N++ + + +++T+ +P L Sbjct: 220 RYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLK 279 Query: 160 SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 SR V I P+ + +++K + I + ++A +I +R+ ++ E ++++ Sbjct: 280 SRFGWGLTVAIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRV 339 Query: 220 DNLALSRGMGITRSLAAEVLKET 242 A G IT E L++ Sbjct: 340 IANANFTGRAITIDFVREALRDL 362 >gi|291086463|ref|ZP_06355876.2| hypothetical protein CIT292_10556 [Citrobacter youngae ATCC 29220] gi|291068324|gb|EFE06433.1| DNA replication initiator protein [Citrobacter youngae ATCC 29220] Length = 471 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + + D+ + + + A P + L G +G GK+ L + I + Sbjct: 136 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 195 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 196 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 255 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 256 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 315 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 316 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 370 >gi|309388282|gb|ADO76162.1| chromosomal replication initiator protein DnaA [Halanaerobium praevalens DSM 2228] Length = 466 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 39/236 (16%), Positives = 85/236 (36%), Gaps = 26/236 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWS------ 85 + D +V ++ A + P++ + + G G GK+ L + Sbjct: 128 NPKYTFDTFVVGNSNRFAHAASLAVAEAPAKAYNPLFIYGDVGLGKTHLMQAIAHFILKN 187 Query: 86 -----------DKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128 + + ++I D + + L++DI L + + FH Sbjct: 188 NPDYKVVYVSSETFTNELINSIKDDSTVDFRDKYRNIDILLVDDIQFLAGKERTQEEFFH 247 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H+ + L++++ P L SR + + I PD + ++ K Sbjct: 248 TFNTLHESNRQLIISSDRPPKEIPTLEERLRSRFEWGLITDIQKPDLETRIAILRKKADI 307 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 + I ++ YI +++ ++ E + K+ + I LA E LK+ Sbjct: 308 ENLTIPNEVVIYIANKIQSNIRELEGALVKVIAYSSLVDREIDVDLAREALKDLVN 363 >gi|238897212|ref|YP_002921960.1| chromosomal replication initiation protein [Klebsiella pneumoniae NTUH-K2044] gi|238549542|dbj|BAH65893.1| chromosomal replication initiation protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 467 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + + D+ + + + A P + L G +G GK+ L + I + Sbjct: 132 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIVA 191 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 192 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 251 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 252 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 311 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 312 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 366 >gi|330005213|ref|ZP_08305172.1| replication initiator protein DnaA [Klebsiella sp. MS 92-3] gi|328536345|gb|EGF62707.1| replication initiator protein DnaA [Klebsiella sp. MS 92-3] Length = 471 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + + D+ + + + A P + L G +G GK+ L + I + Sbjct: 136 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIVA 195 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 196 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 255 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 256 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 315 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 316 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 370 >gi|227539247|ref|ZP_03969296.1| DNA-directed DNA replication initiator protein [Sphingobacterium spiritivorum ATCC 33300] gi|300770720|ref|ZP_07080599.1| DNA-directed DNA replication initiator protein [Sphingobacterium spiritivorum ATCC 33861] gi|227240929|gb|EEI90944.1| DNA-directed DNA replication initiator protein [Sphingobacterium spiritivorum ATCC 33300] gi|300763196|gb|EFK60013.1| DNA-directed DNA replication initiator protein [Sphingobacterium spiritivorum ATCC 33861] Length = 475 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 41/260 (15%), Positives = 88/260 (33%), Gaps = 39/260 (15%) Query: 10 FFVPDKQKND-QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQA----VRLIDSWPSWPS 64 F +P +K P QL + D+ + A + + Sbjct: 124 FVIPGLKKLQVDP-----QL------NQHYTFDNFIEGECNRLARSAGFAVANKPGGTSF 172 Query: 65 RVVILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDT 107 ++L G G GK+ L+ +K ++ + + ++ Sbjct: 173 NPLMLYGDVGLGKTHLSQAIGNEIKRNLPDKLVIYVSCEKFCQQFVDSLKNNTINDFVNF 232 Query: 108 RKP---VLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161 + ++++D+ + FHI N +HQ +++T+ P L SR Sbjct: 233 YQAMDVIIMDDVHNFAGKEKTQDIFFHIFNHLHQSGKQIILTSDKAPKDLAGLEERLLSR 292 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 K I +PD + ++ K I + + + Y+ +++ S+ E + + Sbjct: 293 FKWGLSADIQVPDLETRMAILKKKMYSDGIELPENVVEYVAHQIDNSVRELEGAMVSLLA 352 Query: 222 LALSRGMGITRSLAAEVLKE 241 + I +LA +LK Sbjct: 353 QSTLNKKEIDLNLAKSMLKN 372 >gi|16131570|ref|NP_418157.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli str. K-12 substr. MG1655] gi|74314016|ref|YP_312435.1| chromosomal replication initiation protein [Shigella sonnei Ss046] gi|89110311|ref|AP_004091.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli str. K-12 substr. W3110] gi|91213224|ref|YP_543210.1| chromosomal replication initiation protein [Escherichia coli UTI89] gi|157155055|ref|YP_001465187.1| chromosomal replication initiation protein [Escherichia coli E24377A] gi|157163182|ref|YP_001460500.1| chromosomal replication initiation protein [Escherichia coli HS] gi|170679718|ref|YP_001746030.1| chromosomal replication initiation protein [Escherichia coli SMS-3-5] gi|188495189|ref|ZP_03002459.1| chromosomal replication initiator protein DnaA [Escherichia coli 53638] gi|191165774|ref|ZP_03027612.1| chromosomal replication initiator protein DnaA [Escherichia coli B7A] gi|191170447|ref|ZP_03032000.1| chromosomal replication initiator protein DnaA [Escherichia coli F11] gi|193063799|ref|ZP_03044886.1| chromosomal replication initiator protein DnaA [Escherichia coli E22] gi|193069150|ref|ZP_03050107.1| chromosomal replication initiator protein DnaA [Escherichia coli E110019] gi|194428054|ref|ZP_03060598.1| chromosomal replication initiator protein DnaA [Escherichia coli B171] gi|194431303|ref|ZP_03063596.1| chromosomal replication initiator protein DnaA [Shigella dysenteriae 1012] gi|194435690|ref|ZP_03067793.1| chromosomal replication initiator protein DnaA [Escherichia coli 101-1] gi|209921179|ref|YP_002295263.1| chromosomal replication initiation protein [Escherichia coli SE11] gi|215489042|ref|YP_002331473.1| chromosomal replication initiation protein [Escherichia coli O127:H6 str. E2348/69] gi|218556267|ref|YP_002389181.1| chromosomal replication initiation protein [Escherichia coli IAI1] gi|218560777|ref|YP_002393690.1| chromosomal replication initiation protein [Escherichia coli S88] gi|218691990|ref|YP_002400202.1| chromosomal replication initiation protein [Escherichia coli ED1a] gi|218697424|ref|YP_002405091.1| chromosomal replication initiation protein [Escherichia coli 55989] gi|218702551|ref|YP_002410180.1| chromosomal replication initiation protein [Escherichia coli IAI39] gi|218707348|ref|YP_002414867.1| chromosomal replication initiation protein [Escherichia coli UMN026] gi|237703502|ref|ZP_04533983.1| chromosomal replication initiation protein [Escherichia sp. 3_2_53FAA] gi|238902792|ref|YP_002928588.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli BW2952] gi|253771436|ref|YP_003034267.1| chromosomal replication initiation protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254038919|ref|ZP_04872971.1| chromosomal replication initiation protein [Escherichia sp. 1_1_43] gi|254163653|ref|YP_003046761.1| chromosomal replication initiation protein [Escherichia coli B str. REL606] gi|256021280|ref|ZP_05435145.1| chromosomal replication initiation protein [Shigella sp. D9] gi|256025567|ref|ZP_05439432.1| chromosomal replication initiation protein [Escherichia sp. 4_1_40B] gi|260846513|ref|YP_003224291.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli O103:H2 str. 12009] gi|293407342|ref|ZP_06651264.1| dnaA [Escherichia coli FVEC1412] gi|293417175|ref|ZP_06659802.1| chromosomal replication initiator protein DnaA [Escherichia coli B185] gi|293464026|ref|ZP_06664440.1| chromosomal replication initiator protein DnaA [Escherichia coli B088] gi|298383083|ref|ZP_06992678.1| chromosomal replication initiator protein dnaA [Escherichia coli FVEC1302] gi|301028495|ref|ZP_07191735.1| replication initiator protein DnaA [Escherichia coli MS 196-1] gi|306815945|ref|ZP_07450083.1| chromosomal replication initiation protein [Escherichia coli NC101] gi|307140402|ref|ZP_07499758.1| chromosomal replication initiation protein [Escherichia coli H736] gi|307313229|ref|ZP_07592854.1| chromosomal replication initiator protein DnaA [Escherichia coli W] gi|312967888|ref|ZP_07782100.1| chromosomal replication initiator protein DnaA [Escherichia coli 2362-75] gi|331660044|ref|ZP_08360982.1| replication initiation protein DnaA [Escherichia coli TA206] gi|331665352|ref|ZP_08366253.1| replication initiation protein DnaA [Escherichia coli TA143] gi|331670546|ref|ZP_08371385.1| replication initiation protein DnaA [Escherichia coli TA271] gi|331685426|ref|ZP_08386012.1| replication initiation protein DnaA [Escherichia coli H299] gi|332282511|ref|ZP_08394924.1| chromosomal replication initiation protein [Shigella sp. D9] gi|399394|sp|P03004|DNAA_ECOLI RecName: Full=Chromosomal replication initiator protein DnaA gi|123387748|sp|Q1R4N5|DNAA_ECOUT RecName: Full=Chromosomal replication initiator protein DnaA gi|123745913|sp|Q3YWB2|DNAA_SHISS RecName: Full=Chromosomal replication initiator protein DnaA gi|167016899|sp|A7ZTQ8|DNAA_ECO24 RecName: Full=Chromosomal replication initiator protein DnaA gi|167016900|sp|A8A6G3|DNAA_ECOHS RecName: Full=Chromosomal replication initiator protein DnaA gi|226735803|sp|B7MGC3|DNAA_ECO45 RecName: Full=Chromosomal replication initiator protein DnaA gi|226735805|sp|B7NR04|DNAA_ECO7I RecName: Full=Chromosomal replication initiator protein DnaA gi|226735806|sp|B7M553|DNAA_ECO8A RecName: Full=Chromosomal replication initiator protein DnaA gi|226735807|sp|B7NF19|DNAA_ECOLU RecName: Full=Chromosomal replication initiator protein DnaA gi|226735808|sp|B6I3T5|DNAA_ECOSE RecName: Full=Chromosomal replication initiator protein DnaA gi|226735809|sp|B1LL27|DNAA_ECOSM RecName: Full=Chromosomal replication initiator protein DnaA gi|254777900|sp|B7UMG9|DNAA_ECO27 RecName: Full=Chromosomal replication initiator protein DnaA gi|254777901|sp|B7L846|DNAA_ECO55 RecName: Full=Chromosomal replication initiator protein DnaA gi|254777902|sp|B7N2E7|DNAA_ECO81 RecName: Full=Chromosomal replication initiator protein DnaA gi|259645248|sp|C4ZYX9|DNAA_ECOBW RecName: Full=Chromosomal replication initiator protein DnaA gi|145760|gb|AAB59149.1| DnaA protein (gtg start codon) [Escherichia coli] gi|2367267|gb|AAC76725.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli str. K-12 substr. MG1655] gi|73857493|gb|AAZ90200.1| DnaA [Shigella sonnei Ss046] gi|85676342|dbj|BAE77592.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli str. K12 substr. W3110] gi|91074798|gb|ABE09679.1| chromosomal replication initiator protein DnaA [Escherichia coli UTI89] gi|157068862|gb|ABV08117.1| chromosomal replication initiator protein DnaA [Escherichia coli HS] gi|157077085|gb|ABV16793.1| chromosomal replication initiator protein DnaA [Escherichia coli E24377A] gi|170517436|gb|ACB15614.1| chromosomal replication initiator protein DnaA [Escherichia coli SMS-3-5] gi|188490388|gb|EDU65491.1| chromosomal replication initiator protein DnaA [Escherichia coli 53638] gi|190904098|gb|EDV63809.1| chromosomal replication initiator protein DnaA [Escherichia coli B7A] gi|190909255|gb|EDV68841.1| chromosomal replication initiator protein DnaA [Escherichia coli F11] gi|192930514|gb|EDV83121.1| chromosomal replication initiator protein DnaA [Escherichia coli E22] gi|192957474|gb|EDV87920.1| chromosomal replication initiator protein DnaA [Escherichia coli E110019] gi|194413812|gb|EDX30090.1| chromosomal replication initiator protein DnaA [Escherichia coli B171] gi|194420758|gb|EDX36834.1| chromosomal replication initiator protein DnaA [Shigella dysenteriae 1012] gi|194425233|gb|EDX41217.1| chromosomal replication initiator protein DnaA [Escherichia coli 101-1] gi|209914438|dbj|BAG79512.1| DNA replication initiator protein DnaA [Escherichia coli SE11] gi|215267114|emb|CAS11561.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli O127:H6 str. E2348/69] gi|218354156|emb|CAV00757.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli 55989] gi|218363036|emb|CAR00675.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli IAI1] gi|218367546|emb|CAR05331.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli S88] gi|218372537|emb|CAR20412.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli IAI39] gi|218429554|emb|CAR10518.2| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli ED1a] gi|218434445|emb|CAR15373.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli UMN026] gi|222035416|emb|CAP78161.1| chromosomal replication initiator protein dnaA [Escherichia coli LF82] gi|226838884|gb|EEH70911.1| chromosomal replication initiation protein [Escherichia sp. 1_1_43] gi|226902766|gb|EEH89025.1| chromosomal replication initiation protein [Escherichia sp. 3_2_53FAA] gi|238860149|gb|ACR62147.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli BW2952] gi|242379241|emb|CAQ34046.1| chromosomal replication initiator protein DnaA; DNA-binding transcriptional dual regulator [Escherichia coli BL21(DE3)] gi|253322480|gb|ACT27082.1| chromosomal replication initiator protein DnaA [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975554|gb|ACT41225.1| chromosomal replication initiation protein [Escherichia coli B str. REL606] gi|253979710|gb|ACT45380.1| chromosomal replication initiation protein [Escherichia coli BL21(DE3)] gi|257761660|dbj|BAI33157.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli O103:H2 str. 12009] gi|260447280|gb|ACX37702.1| chromosomal replication initiator protein DnaA [Escherichia coli DH1] gi|281180756|dbj|BAI57086.1| DNA replication initiator protein DnaA [Escherichia coli SE15] gi|284923785|emb|CBG36883.1| chromosomal replication initiator protein [Escherichia coli 042] gi|291321658|gb|EFE61094.1| chromosomal replication initiator protein DnaA [Escherichia coli B088] gi|291425633|gb|EFE98669.1| dnaA [Escherichia coli FVEC1412] gi|291431206|gb|EFF04199.1| chromosomal replication initiator protein DnaA [Escherichia coli B185] gi|294493541|gb|ADE92297.1| chromosomal replication initiator protein DnaA [Escherichia coli IHE3034] gi|298276919|gb|EFI18437.1| chromosomal replication initiator protein dnaA [Escherichia coli FVEC1302] gi|299878457|gb|EFI86668.1| replication initiator protein DnaA [Escherichia coli MS 196-1] gi|305850341|gb|EFM50798.1| chromosomal replication initiation protein [Escherichia coli NC101] gi|306906912|gb|EFN37421.1| chromosomal replication initiator protein DnaA [Escherichia coli W] gi|307555842|gb|ADN48617.1| chromosomal replication initiator protein DnaA [Escherichia coli ABU 83972] gi|307628778|gb|ADN73082.1| chromosomal replication initiation protein [Escherichia coli UM146] gi|309704149|emb|CBJ03496.1| chromosomal replication initiator protein [Escherichia coli ETEC H10407] gi|312287449|gb|EFR15357.1| chromosomal replication initiator protein DnaA [Escherichia coli 2362-75] gi|312948269|gb|ADR29096.1| chromosomal replication initiation protein [Escherichia coli O83:H1 str. NRG 857C] gi|315063008|gb|ADT77335.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli W] gi|320174824|gb|EFW49947.1| Chromosomal replication initiator protein DnaA [Shigella dysenteriae CDC 74-1112] gi|320193752|gb|EFW68385.1| Chromosomal replication initiator protein DnaA [Escherichia coli WV_060327] gi|323164686|gb|EFZ50481.1| chromosomal replication initiator protein DnaA [Shigella sonnei 53G] gi|323376398|gb|ADX48666.1| chromosomal replication initiator protein DnaA [Escherichia coli KO11] gi|323934947|gb|EGB31325.1| chromosomal replication initiator protein DnaA [Escherichia coli E1520] gi|323939235|gb|EGB35448.1| chromosomal replication initiator protein DnaA [Escherichia coli E482] gi|323944174|gb|EGB40254.1| chromosomal replication initiator protein DnaA [Escherichia coli H120] gi|323949945|gb|EGB45829.1| chromosomal replication initiator protein DnaA [Escherichia coli H252] gi|323955004|gb|EGB50782.1| chromosomal replication initiator protein DnaA [Escherichia coli H263] gi|323959767|gb|EGB55417.1| chromosomal replication initiator protein DnaA [Escherichia coli H489] gi|323971179|gb|EGB66425.1| chromosomal replication initiator protein DnaA [Escherichia coli TA007] gi|324115946|gb|EGC09872.1| chromosomal replication initiator protein DnaA [Escherichia coli E1167] gi|330908019|gb|EGH36538.1| chromosomal replication initiator protein DnaA [Escherichia coli AA86] gi|331053259|gb|EGI25292.1| replication initiation protein DnaA [Escherichia coli TA206] gi|331057862|gb|EGI29848.1| replication initiation protein DnaA [Escherichia coli TA143] gi|331062608|gb|EGI34528.1| replication initiation protein DnaA [Escherichia coli TA271] gi|331077797|gb|EGI49009.1| replication initiation protein DnaA [Escherichia coli H299] gi|332084015|gb|EGI89222.1| chromosomal replication initiator protein DnaA [Shigella dysenteriae 155-74] gi|332084892|gb|EGI90075.1| chromosomal replication initiator protein DnaA [Shigella boydii 5216-82] gi|332089364|gb|EGI94468.1| chromosomal replication initiator protein DnaA [Shigella boydii 3594-74] gi|332104863|gb|EGJ08209.1| chromosomal replication initiation protein [Shigella sp. D9] gi|332345693|gb|AEE59027.1| chromosomal replication initiator protein DnaA [Escherichia coli UMNK88] gi|332997868|gb|EGK17476.1| chromosomal replication initiator protein DnaA [Shigella flexneri K-272] gi|333013663|gb|EGK33028.1| chromosomal replication initiator protein DnaA [Shigella flexneri K-227] Length = 467 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + + D+ + + + A P + L G +G GK+ L + I + Sbjct: 132 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 191 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 192 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 251 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 252 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 311 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 312 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 366 >gi|297518857|ref|ZP_06937243.1| chromosomal replication initiation protein [Escherichia coli OP50] Length = 457 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + + D+ + + + A P + L G +G GK+ L + I + Sbjct: 122 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 181 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 182 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 241 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 242 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 301 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 302 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 356 >gi|260857887|ref|YP_003231778.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli O26:H11 str. 11368] gi|257756536|dbj|BAI28038.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli O26:H11 str. 11368] Length = 467 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + + D+ + + + A P + L G +G GK+ L + I + Sbjct: 132 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 191 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 192 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 251 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 252 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 311 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 312 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 366 >gi|170018062|ref|YP_001723016.1| chromosomal replication initiation protein [Escherichia coli ATCC 8739] gi|189044638|sp|B1IYP2|DNAA_ECOLC RecName: Full=Chromosomal replication initiator protein DnaA gi|169752990|gb|ACA75689.1| chromosomal replication initiator protein DnaA [Escherichia coli ATCC 8739] Length = 467 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + + D+ + + + A P + L G +G GK+ L + I + Sbjct: 132 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 191 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 192 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 251 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 252 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 311 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 312 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 366 >gi|158834309|gb|ABW81954.1| transcriptional dual regulator [Candidatus Hamiltonella defensa] gi|158834325|gb|ABW81962.1| transcriptional dual regulator [Candidatus Hamiltonella defensa] gi|158834327|gb|ABW81963.1| transcriptional dual regulator [Candidatus Hamiltonella defensa] gi|158834329|gb|ABW81964.1| transcriptional dual regulator [Candidatus Hamiltonella defensa] gi|158834331|gb|ABW81965.1| transcriptional dual regulator [Candidatus Hamiltonella defensa] gi|158834333|gb|ABW81966.1| transcriptional dual regulator [Candidatus Hamiltonella defensa] gi|158834337|gb|ABW81968.1| transcriptional dual regulator [Candidatus Hamiltonella defensa] gi|158834339|gb|ABW81969.1| transcriptional dual regulator [Candidatus Hamiltonella defensa] gi|158834341|gb|ABW81970.1| transcriptional dual regulator [Candidatus Hamiltonella defensa] gi|158834343|gb|ABW81971.1| transcriptional dual regulator [Candidatus Hamiltonella defensa] gi|158834345|gb|ABW81972.1| transcriptional dual regulator [Candidatus Hamiltonella defensa] gi|158834347|gb|ABW81973.1| transcriptional dual regulator [Candidatus Hamiltonella defensa] gi|158834351|gb|ABW81975.1| transcriptional dual regulator [Candidatus Hamiltonella defensa] gi|158834353|gb|ABW81976.1| transcriptional dual regulator [Candidatus Hamiltonella defensa] Length = 306 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 93/229 (40%), Gaps = 26/229 (11%) Query: 40 RDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLAN-----IWSDKSRS- 90 D + + + A + P + L G +G GK+ L + I + K+++ Sbjct: 51 FDTFVEGKSNQLARAAAIQVSGNPGAAYNPLFLYGDTGLGKTHLLHAVGNGIIAHKTKAK 110 Query: 91 -------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLFHIINSI 133 ++ K+L + I+ + +L++DI + + FH N++ Sbjct: 111 VVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNAL 170 Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193 + + +++T+ +P L SR V I+ P+ + +++K + I + Sbjct: 171 LEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIAPPELETRVAILMKKADENNIRL 230 Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++A +I +R+ ++ E ++++ A G IT + L++ Sbjct: 231 PGEVAFFIAKRLRSNVRELEGALNRVMANANFTGKAITIDFVRDALRDL 279 >gi|117625978|ref|YP_859301.1| chromosomal replication initiation protein [Escherichia coli APEC O1] gi|227883923|ref|ZP_04001728.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli 83972] gi|293413156|ref|ZP_06655822.1| chromosomal replication initiator protein DnaA [Escherichia coli B354] gi|300815051|ref|ZP_07095276.1| replication initiator protein DnaA [Escherichia coli MS 107-1] gi|300824313|ref|ZP_07104429.1| replication initiator protein DnaA [Escherichia coli MS 119-7] gi|300896031|ref|ZP_07114592.1| replication initiator protein DnaA [Escherichia coli MS 198-1] gi|300903023|ref|ZP_07120965.1| replication initiator protein DnaA [Escherichia coli MS 84-1] gi|300917468|ref|ZP_07134128.1| replication initiator protein DnaA [Escherichia coli MS 115-1] gi|300925526|ref|ZP_07141401.1| replication initiator protein DnaA [Escherichia coli MS 182-1] gi|300932333|ref|ZP_07147601.1| replication initiator protein DnaA [Escherichia coli MS 187-1] gi|300947537|ref|ZP_07161714.1| replication initiator protein DnaA [Escherichia coli MS 116-1] gi|300956292|ref|ZP_07168594.1| replication initiator protein DnaA [Escherichia coli MS 175-1] gi|300983653|ref|ZP_07176694.1| replication initiator protein DnaA [Escherichia coli MS 200-1] gi|300984540|ref|ZP_07177030.1| replication initiator protein DnaA [Escherichia coli MS 45-1] gi|301020909|ref|ZP_07184964.1| replication initiator protein DnaA [Escherichia coli MS 69-1] gi|301047520|ref|ZP_07194596.1| replication initiator protein DnaA [Escherichia coli MS 185-1] gi|301305952|ref|ZP_07212034.1| replication initiator protein DnaA [Escherichia coli MS 124-1] gi|301325006|ref|ZP_07218556.1| replication initiator protein DnaA [Escherichia coli MS 78-1] gi|301644374|ref|ZP_07244375.1| replication initiator protein DnaA [Escherichia coli MS 146-1] gi|309795749|ref|ZP_07690164.1| replication initiator protein DnaA [Escherichia coli MS 145-7] gi|331644426|ref|ZP_08345555.1| replication initiation protein DnaA [Escherichia coli H736] gi|331649528|ref|ZP_08350614.1| replication initiation protein DnaA [Escherichia coli M605] gi|331655362|ref|ZP_08356361.1| replication initiation protein DnaA [Escherichia coli M718] gi|331675192|ref|ZP_08375945.1| replication initiation protein DnaA [Escherichia coli TA280] gi|331679800|ref|ZP_08380470.1| replication initiation protein DnaA [Escherichia coli H591] gi|115515102|gb|ABJ03177.1| chromosomal replication initiation protein [Escherichia coli APEC O1] gi|227839201|gb|EEJ49667.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli 83972] gi|291468289|gb|EFF10784.1| chromosomal replication initiator protein DnaA [Escherichia coli B354] gi|300300580|gb|EFJ56965.1| replication initiator protein DnaA [Escherichia coli MS 185-1] gi|300306876|gb|EFJ61396.1| replication initiator protein DnaA [Escherichia coli MS 200-1] gi|300316879|gb|EFJ66663.1| replication initiator protein DnaA [Escherichia coli MS 175-1] gi|300360091|gb|EFJ75961.1| replication initiator protein DnaA [Escherichia coli MS 198-1] gi|300398376|gb|EFJ81914.1| replication initiator protein DnaA [Escherichia coli MS 69-1] gi|300404929|gb|EFJ88467.1| replication initiator protein DnaA [Escherichia coli MS 84-1] gi|300408373|gb|EFJ91911.1| replication initiator protein DnaA [Escherichia coli MS 45-1] gi|300415272|gb|EFJ98582.1| replication initiator protein DnaA [Escherichia coli MS 115-1] gi|300418366|gb|EFK01677.1| replication initiator protein DnaA [Escherichia coli MS 182-1] gi|300452874|gb|EFK16494.1| replication initiator protein DnaA [Escherichia coli MS 116-1] gi|300459919|gb|EFK23412.1| replication initiator protein DnaA [Escherichia coli MS 187-1] gi|300523200|gb|EFK44269.1| replication initiator protein DnaA [Escherichia coli MS 119-7] gi|300531943|gb|EFK53005.1| replication initiator protein DnaA [Escherichia coli MS 107-1] gi|300838803|gb|EFK66563.1| replication initiator protein DnaA [Escherichia coli MS 124-1] gi|300848100|gb|EFK75860.1| replication initiator protein DnaA [Escherichia coli MS 78-1] gi|301077315|gb|EFK92121.1| replication initiator protein DnaA [Escherichia coli MS 146-1] gi|308120628|gb|EFO57890.1| replication initiator protein DnaA [Escherichia coli MS 145-7] gi|315254611|gb|EFU34579.1| replication initiator protein DnaA [Escherichia coli MS 85-1] gi|315285493|gb|EFU44938.1| replication initiator protein DnaA [Escherichia coli MS 110-3] gi|315292860|gb|EFU52212.1| replication initiator protein DnaA [Escherichia coli MS 153-1] gi|315296900|gb|EFU56188.1| replication initiator protein DnaA [Escherichia coli MS 16-3] gi|324008038|gb|EGB77257.1| replication initiator protein DnaA [Escherichia coli MS 57-2] gi|324012737|gb|EGB81956.1| replication initiator protein DnaA [Escherichia coli MS 60-1] gi|324018430|gb|EGB87649.1| replication initiator protein DnaA [Escherichia coli MS 117-3] gi|331036720|gb|EGI08946.1| replication initiation protein DnaA [Escherichia coli H736] gi|331042026|gb|EGI14170.1| replication initiation protein DnaA [Escherichia coli M605] gi|331047377|gb|EGI19455.1| replication initiation protein DnaA [Escherichia coli M718] gi|331067637|gb|EGI39039.1| replication initiation protein DnaA [Escherichia coli TA280] gi|331072972|gb|EGI44297.1| replication initiation protein DnaA [Escherichia coli H591] Length = 471 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + + D+ + + + A P + L G +G GK+ L + I + Sbjct: 136 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 195 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 196 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 255 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 256 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 315 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 316 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 370 >gi|323177714|gb|EFZ63298.1| chromosomal replication initiator protein DnaA [Escherichia coli 1180] Length = 444 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + + D+ + + + A P + L G +G GK+ L + I + Sbjct: 109 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 168 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 169 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 228 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 229 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILIKKAD 288 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 289 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 343 >gi|259910295|ref|YP_002650651.1| Chromosomal replication initiator protein [Erwinia pyrifoliae Ep1/96] gi|224965917|emb|CAX57450.1| Chromosomal replication initiator protein [Erwinia pyrifoliae Ep1/96] Length = 463 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 91/235 (38%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + D+ + + + A P + L G +G GK+ L + I + Sbjct: 128 VNTRHNFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 187 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 188 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 247 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 248 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 307 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 308 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 362 >gi|82546034|ref|YP_409981.1| chromosomal replication initiation protein [Shigella boydii Sb227] gi|123769372|sp|Q31UV5|DNAA_SHIBS RecName: Full=Chromosomal replication initiator protein DnaA gi|81247445|gb|ABB68153.1| DnaA [Shigella boydii Sb227] Length = 467 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + + D+ + + + A P + L G +G GK+ L + I + Sbjct: 132 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 191 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 192 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 251 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 252 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 311 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 312 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 366 >gi|323965763|gb|EGB61214.1| chromosomal replication initiator protein DnaA [Escherichia coli M863] gi|323975231|gb|EGB70335.1| chromosomal replication initiator protein DnaA [Escherichia coli TW10509] gi|327250845|gb|EGE62547.1| chromosomal replication initiator protein DnaA [Escherichia coli STEC_7v] Length = 467 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + + D+ + + + A P + L G +G GK+ L + I + Sbjct: 132 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 191 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 192 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 251 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 252 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 311 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 312 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 366 >gi|109896333|ref|YP_659588.1| chromosomal replication initiator protein DnaA [Pseudoalteromonas atlantica T6c] gi|109698614|gb|ABG38534.1| chromosomal replication initiator protein DnaA [Pseudoalteromonas atlantica T6c] Length = 474 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 93/231 (40%), Gaps = 26/231 (11%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSDKSR 89 D+ + + + A P + + + G +G GK+ L + I +K Sbjct: 143 YKFDNFVEGKSNQLARAASKQVSDNPGKAYNPLFIYGGTGLGKTHLLHAVGNGIIDNKKD 202 Query: 90 STRF--------SNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLFHIIN 131 +T ++ K+L + I+ + +L++DI + + FH N Sbjct: 203 ATVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFN 262 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 ++ + + +++T+ +P L SR + I P+ + ++++ + +I Sbjct: 263 ALLEGNQQIILTSDRYPKEIDGVEDRLKSRFGWGLTIAIEPPELETRVAILMRKALENKI 322 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 323 VLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 373 >gi|158834319|gb|ABW81959.1| transcriptional dual regulator [Candidatus Hamiltonella defensa] Length = 306 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 94/229 (41%), Gaps = 26/229 (11%) Query: 40 RDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLAN-----IWSDKSRS- 90 D + + + A + P + L G +G GK+ L + I + K+++ Sbjct: 51 FDTFVEGKSNQLARAAAIQVSGNPGAAYNPLFLYGDTGLGKTHLLHAVGNGIIAHKTKAK 110 Query: 91 -------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLFHIINSI 133 ++ K+L + I+ + +L++DI + + FH N++ Sbjct: 111 VVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNAL 170 Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193 + + +++T+ +P L SR V I+ P+ + +++K + I + Sbjct: 171 LEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIAPPELETRVAILMKKADENNIRL 230 Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +++A +I +R+ ++ E ++++ A G IT + L++ Sbjct: 231 PREVAFFIAKRLRSNVRELEGALNRVMANANFTGKAITIDFVRDALRDL 279 >gi|30065010|ref|NP_839181.1| chromosomal replication initiation protein [Shigella flexneri 2a str. 2457T] gi|30043271|gb|AAP18992.1| replication initiation protein DnaA [Shigella flexneri 2a str. 2457T] gi|281603071|gb|ADA76055.1| Chromosomal replication initiator protein dnaA [Shigella flexneri 2002017] gi|313647710|gb|EFS12158.1| chromosomal replication initiator protein DnaA [Shigella flexneri 2a str. 2457T] gi|332750694|gb|EGJ81102.1| chromosomal replication initiator protein DnaA [Shigella flexneri 4343-70] gi|332751785|gb|EGJ82183.1| chromosomal replication initiator protein DnaA [Shigella flexneri 2747-71] gi|332997470|gb|EGK17086.1| chromosomal replication initiator protein DnaA [Shigella flexneri K-218] gi|333013259|gb|EGK32632.1| chromosomal replication initiator protein DnaA [Shigella flexneri K-304] Length = 467 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + + D+ + + + A P + L G +G GK+ L + I + Sbjct: 132 VNVKHTFDNFVEGKSNQLARAAACQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 191 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 192 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 251 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 252 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 311 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 312 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 366 >gi|220930851|ref|YP_002507759.1| chromosomal replication initiator protein DnaA [Halothermothrix orenii H 168] gi|219992161|gb|ACL68764.1| chromosomal replication initiator protein DnaA [Halothermothrix orenii H 168] Length = 463 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 40/238 (16%), Positives = 85/238 (35%), Gaps = 26/238 (10%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWS------ 85 + D +V ++ A + P+R + + G G GK+ L + Sbjct: 123 NPKYTFDTFVVGNSNRFAHAASLAVAEAPARAYNPLFIYGDVGLGKTHLMQAIAHFILDH 182 Query: 86 -----------DKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128 + + + I + + + L++DI L + + FH Sbjct: 183 NPDKKVVYVSSETFTNELINAIKDDRTVEFRNKYRNIDILLVDDIQFLAGKERTQEEFFH 242 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 NS+H+ + L++++ P L SR + + I PD + ++ K Sbjct: 243 TFNSLHEANKQLIISSDRPPKEIPTLEERLRSRFEWGLITDIQKPDLETRIAILRKKADL 302 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + + ++ YI +++ ++ E + K+ + I LA E LK+ D Sbjct: 303 EDLEVPNEVIIYIANKIQSNIRELEGALIKVIAYSSLVNREIDIDLAQEALKDLVAKD 360 >gi|154496124|ref|ZP_02034820.1| hypothetical protein BACCAP_00408 [Bacteroides capillosus ATCC 29799] gi|150274679|gb|EDN01743.1| hypothetical protein BACCAP_00408 [Bacteroides capillosus ATCC 29799] Length = 426 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 39/215 (18%), Positives = 82/215 (38%), Gaps = 28/215 (13%) Query: 32 FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKS 88 P + + +V S+ + A S P + + + G SG GK+ L + K Sbjct: 85 LPGTEDYTFERFVVGSSNKFAHAAALSVAENPGKSYNPLFIYGESGLGKTHLLYAIAHKI 144 Query: 89 RSTR-----------------FSNIAKSLDSILID---TRKPVLLEDIDLLDFND---TQ 125 +TR I + + + + L++D+ + + + Sbjct: 145 HATRPDFRVVYIKGDAFTNELIQAIREGSNQEFREKFRSADVFLMDDVQFIAGRESSQEE 204 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVK 184 +FH N++++ ++ TA P + L D L +R + V I PD + +I Sbjct: 205 MFHTFNTLYEAGRQIVFTADRPPKEM-LRLDDRLKTRFEWGLPVDIKPPDYETRVAIIKN 263 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 R + + + + YI + + ++ E V+K+ Sbjct: 264 KAIRRGMELPEPVLQYIAENITSNVRQIEGTVNKI 298 >gi|239825585|ref|YP_002948209.1| chromosomal replication initiation protein [Geobacillus sp. WCH70] gi|259645252|sp|C5D327|DNAA_GEOSW RecName: Full=Chromosomal replication initiator protein DnaA gi|239805878|gb|ACS22943.1| chromosomal replication initiator protein DnaA [Geobacillus sp. WCH70] Length = 450 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 45/255 (17%), Positives = 95/255 (37%), Gaps = 29/255 (11%) Query: 16 QKNDQPKNKEEQLFFSFP---RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VIL 69 Q++ + K + FP + D ++ S A + P++ + + Sbjct: 92 QRSSKKHRKPYEESTDFPQSMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFI 151 Query: 70 VGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTRKPV- 111 G G GK+ L + S+K + + I + + + V Sbjct: 152 YGGVGLGKTHLMHAIGHYVIEHNPSAKVVYLSSEKFTNEFINAIRDNRPDDFRNKYRNVD 211 Query: 112 --LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 L++DI L + + FH N++H+ +++++ P L SR + Sbjct: 212 VLLIDDIQFLAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGL 271 Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 + I+ PD + ++ K I ++ YI +++ ++ E + ++ + Sbjct: 272 ITDITPPDLETRIAILRKKAKAEGFDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLI 331 Query: 227 GMGITRSLAAEVLKE 241 IT LAAE LK+ Sbjct: 332 NKEITADLAAEALKD 346 >gi|307265438|ref|ZP_07546994.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter wiegelii Rt8.B1] gi|306919552|gb|EFN49770.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter wiegelii Rt8.B1] Length = 443 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 35/233 (15%), Positives = 90/233 (38%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD----- 86 + D +V ++ + A + P++ + + G G GK+ L + Sbjct: 109 NPKYTFDTFVVGNSNKLAHAACLAVAQAPAKAYNPLFIYGGVGLGKTHLMHAIGHFINKH 168 Query: 87 KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 +S +++ + L+++ K +L++DI + + + FH Sbjct: 169 QSGYKIMYVTSETFTNELVNSIKDDKNEEFRNKYRNIDVLLIDDIQFIAKKERTQEEFFH 228 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++++ + +++++ P L SR + + I PD + ++ K Sbjct: 229 TFNTLYEANKQIVISSDRPPKEIPTLEERLRSRFEWGLIADIQPPDYETRIAILKKKAQT 288 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I ++ AY+ ++++ ++ E + ++ + I L LKE Sbjct: 289 ENLNIPDEVLAYVAEKIQSNIRELEGALIRIVAFSNLTKSNIDLELTKHALKE 341 >gi|260885410|ref|ZP_05734994.2| bacterial DnaA protein helix-turn-helix protein [Prevotella tannerae ATCC 51259] gi|260852301|gb|EEX72170.1| bacterial DnaA protein helix-turn-helix protein [Prevotella tannerae ATCC 51259] Length = 460 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 44/265 (16%), Positives = 93/265 (35%), Gaps = 36/265 (13%) Query: 13 PDKQKNDQPKNKEEQLFFSFPRCLGISRD----DLLVHSAIEQAVRL---IDSWPSWPS- 64 P ++K ++ ++ + ++RD + A + A + I P P+ Sbjct: 105 PRREKVEKVEDAPRRERLD----PQLNRDYTFKAFVEGRANKLARVIGLAIAKEPGKPAF 160 Query: 65 RVVILVGPSGSGKSCL---------------------ANIWSDKSRSTRFSNIAKSLDSI 103 L GPSG GK+ L A+++ + + N Sbjct: 161 NPFFLYGPSGVGKTHLVNAIGLRILESQPERRVLYVPAHLFKTQYTDSVLHNTINDF-IH 219 Query: 104 LIDTRKPVLLEDIDLL--DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161 T ++++DI + FHI N + Q +++T PV + + +R Sbjct: 220 FYQTIDVLIIDDIQEITTAKTQQAFFHIFNHLQQNGRQIIITCDRAPVDFEGIEERMLTR 279 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 K TV ++ PD ++ + + YI +E S+ + +V+ + Sbjct: 280 FKWGTVTEMEKPDVALRRAILTAKIKRDGLKFPPDVIDYIANNVESSVRELQGIVNSIMA 339 Query: 222 LALSRGMGITRSLAAEVLKETQQCD 246 ++ I + L +V+ + Sbjct: 340 YSVVDNCDICQDLVEKVVARAVNLE 364 >gi|299820842|ref|ZP_07052731.1| DNA-directed DNA replication initiator protein [Listeria grayi DSM 20601] gi|299817863|gb|EFI85098.1| DNA-directed DNA replication initiator protein [Listeria grayi DSM 20601] Length = 456 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 45/266 (16%), Positives = 98/266 (36%), Gaps = 35/266 (13%) Query: 5 KEDYSFFVPDKQKND---QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPS 61 +E + + P K +D P+N + L D ++ S A + Sbjct: 95 EEKFEYVTPKKHLDDIEENPENSKHML------NPRYVFDTFVIGSGNRFAHAASLAVAE 148 Query: 62 WPSRV---VILVGPSGSGKSCLANIW-----SDKSRSTRFSNIAKSLDSILIDTRK---- 109 P++ + + G G GK+ L + K + ++ + I + + Sbjct: 149 APAKAYNPLFIYGGVGLGKTHLMHAVGHYVQQHKENANVMYLSSEKFTNEFISSIRDNKS 208 Query: 110 -----------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 +L++DI L + + FH N+++ +++++ P Sbjct: 209 EEFRAKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFNTLYDEQKQIIISSDRPPKEIPTLE 268 Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215 L SR + + I+ PD + ++ K + I ++ YI +++ ++ E Sbjct: 269 DRLRSRFEWGLITDITPPDLETRIAILRKKAKADGLDIPNEVMLYIANQIDSNIRELEGA 328 Query: 216 VDKMDNLALSRGMGITRSLAAEVLKE 241 + ++ + IT LAAE LK+ Sbjct: 329 LIRVVAYSSLVNKDITAGLAAEALKD 354 >gi|120434989|ref|YP_860675.1| chromosomal replication initiation protein [Gramella forsetii KT0803] gi|117577139|emb|CAL65608.1| chromosomal replication initiator protein DnaA [Gramella forsetii KT0803] Length = 475 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 43/260 (16%), Positives = 90/260 (34%), Gaps = 37/260 (14%) Query: 10 FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66 F +P + E QL + D+ L + A + + P Sbjct: 125 FIIPGIRNV----KIESQL------NPNYNFDNFLEGESNRLARSAGLAVANKPGGTSFN 174 Query: 67 -VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTR 108 +++ G G GK+ LA+ ++K ++ K+ + I Sbjct: 175 PLLIFGGVGLGKTHLAHAIGVEIKDKYPEKTVLYISAEKFTQQYIESVKKNNRNDFIHFY 234 Query: 109 ---KPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 ++++DI LL FHI N +HQ +++T+ PV L SR Sbjct: 235 QIIDVLVVDDIQLLSGKAGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSRF 294 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 K ++ PD + +I + + + + ++ ++ ++ E + + Sbjct: 295 KWGLSAELQHPDFETRVSIIKSKLYRDGVEMPEDIVEFLANNIKTNIRELEGAIISLIAH 354 Query: 223 ALSRGMGITRSLAAEVLKET 242 + IT LA +++ Sbjct: 355 SSFNKKDITLDLAKKIVDNY 374 >gi|218291094|ref|ZP_03495117.1| chromosomal replication initiator protein DnaA [Alicyclobacillus acidocaldarius LAA1] gi|218238979|gb|EED06186.1| chromosomal replication initiator protein DnaA [Alicyclobacillus acidocaldarius LAA1] Length = 454 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 34/238 (14%), Positives = 85/238 (35%), Gaps = 26/238 (10%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW------- 84 + D ++ + A + P+ + + G G GK+ L + Sbjct: 117 NPRYTFDSFVIGAGNRFAHAACLAVAERPANAYNPLFIYGGVGLGKTHLMHAIGHYVRQH 176 Query: 85 ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128 S++ + + I + V L++DI + + + FH Sbjct: 177 YPNFKVSYISSERFTNEFIAAIRDKNPDSFRARYRTVDVLLIDDIQFIANKEQTQEEFFH 236 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 NS+H+ +++++ P L SR + + I PD + ++ + Sbjct: 237 TFNSLHEVGKQIVISSDRPPREIPTLEDRLRSRFEWGLITDIQPPDLETRIAILQRKAKA 296 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + + + A+I +++ ++ E + ++ + ++ +LA E LK+ + Sbjct: 297 DGLDVPVDVLAFIANQIDSNIRELEGALTRVIAYSSLVKEDLSVALAEEALKDLIHPN 354 >gi|320201270|gb|EFW75851.1| Chromosomal replication initiator protein DnaA [Escherichia coli EC4100B] Length = 418 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + + D+ + + + A P + L G +G GK+ L + I + Sbjct: 132 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 191 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 192 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 251 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 252 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 311 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 312 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 366 >gi|161486853|ref|NP_780810.2| chromosomal replication initiation protein [Clostridium tetani E88] Length = 454 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 90/233 (38%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW------- 84 + D ++ ++ A + P++ + + G G GK+ L + Sbjct: 118 NPKYTFDSFVIGNSNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYILQN 177 Query: 85 ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128 S+K + ++I + + + V L++DI + + + FH Sbjct: 178 NSNVKVVYVSSEKFTNELINSIKDDKNEEFRNKYRNVDVLLIDDIQFIAGKERTQEEFFH 237 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H+ + +++++ P L SR + + I PD + ++ K Sbjct: 238 TFNALHEANKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDFETRMAILKKKADV 297 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I ++ YI +++ ++ E + ++ + I+ LA+E LK+ Sbjct: 298 EHLNIPNEVMVYIATKIKSNIRELEGALIRIVAFSSLTNKEISVDLASEALKD 350 >gi|82779231|ref|YP_405580.1| chromosomal replication initiation protein [Shigella dysenteriae Sd197] gi|309784248|ref|ZP_07678887.1| chromosomal replication initiator protein DnaA [Shigella dysenteriae 1617] gi|123769515|sp|Q329B6|DNAA_SHIDS RecName: Full=Chromosomal replication initiator protein DnaA gi|81243379|gb|ABB64089.1| DnaA [Shigella dysenteriae Sd197] gi|308927755|gb|EFP73223.1| chromosomal replication initiator protein DnaA [Shigella dysenteriae 1617] Length = 467 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + + D+ + + + A P + L G +G GK+ L + I + Sbjct: 132 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 191 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 192 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 251 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 252 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 311 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 312 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 366 >gi|28202301|gb|AAO34747.1| chromosomal replication initiator protein dnaA [Clostridium tetani E88] Length = 342 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 90/233 (38%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW------- 84 + D ++ ++ A + P++ + + G G GK+ L + Sbjct: 6 NPKYTFDSFVIGNSNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYILQN 65 Query: 85 ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128 S+K + ++I + + + V L++DI + + + FH Sbjct: 66 NSNVKVVYVSSEKFTNELINSIKDDKNEEFRNKYRNVDVLLIDDIQFIAGKERTQEEFFH 125 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H+ + +++++ P L SR + + I PD + ++ K Sbjct: 126 TFNALHEANKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDFETRMAILKKKADV 185 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I ++ YI +++ ++ E + ++ + I+ LA+E LK+ Sbjct: 186 EHLNIPNEVMVYIATKIKSNIRELEGALIRIVAFSSLTNKEISVDLASEALKD 238 >gi|237729024|ref|ZP_04559505.1| chromosomal replication initiation protein [Citrobacter sp. 30_2] gi|226909646|gb|EEH95564.1| chromosomal replication initiation protein [Citrobacter sp. 30_2] Length = 471 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + + D+ + + + A P + L G +G GK+ L + I + Sbjct: 136 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 195 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 196 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 255 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 256 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 315 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 316 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 370 >gi|283480419|emb|CAY76335.1| Chromosomal replication initiator protein dnaA [Erwinia pyrifoliae DSM 12163] Length = 475 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 91/235 (38%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + D+ + + + A P + L G +G GK+ L + I + Sbjct: 140 VNTRHNFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 199 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 200 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 259 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 260 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 319 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 320 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 374 >gi|146297771|ref|YP_001192362.1| chromosomal replication initiator protein DnaA [Flavobacterium johnsoniae UW101] gi|146152189|gb|ABQ03043.1| chromosomal replication initiator protein DnaA [Flavobacterium johnsoniae UW101] Length = 475 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 41/259 (15%), Positives = 92/259 (35%), Gaps = 37/259 (14%) Query: 10 FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66 F +P + E QL S D+ L + A + + P Sbjct: 125 FVIPGIRNL----KIESQL------NPNYSFDNFLEGDSNRLARSAGMAVANKPGGTSFN 174 Query: 67 -VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTR 108 +++ G G GK+ LA+ ++ ++ K+ + I Sbjct: 175 PLLIFGGVGLGKTHLAHAIGVEVKDKYPEKTVLYISAEIFTQQYIDSVKKNNRNDFIHFY 234 Query: 109 KPV---LLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 + + +++D+ L FHI N +HQ +++T+ PV L SR Sbjct: 235 QLIDVLIIDDVQFLSGKSGTQDVFFHIFNYLHQNGKQVILTSDKAPVDMQDIEQRLLSRF 294 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 K ++ PD + ++ + + + + + Y+ + ++ ++ E + + Sbjct: 295 KWGLSAELHQPDYETRISILKNILYRDGVDMPEDILEYVARNIKSNVRELEGAIISLIAQ 354 Query: 223 ALSRGMGITRSLAAEVLKE 241 + +T LA V+++ Sbjct: 355 SSFNKKEVTIELAKSVVEK 373 >gi|302390798|ref|YP_003826618.1| chromosomal replication initiator protein DnaA [Acetohalobium arabaticum DSM 5501] gi|302202875|gb|ADL11553.1| chromosomal replication initiator protein DnaA [Acetohalobium arabaticum DSM 5501] Length = 449 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 39/233 (16%), Positives = 88/233 (37%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86 + D ++ S+ A + P++ + + G G GK+ L + I Sbjct: 114 NPKYTFDTFVIGSSNRFAHAASLAVAEAPAKAYNPLFIYGDVGLGKTHLMHAIGHYIIEH 173 Query: 87 KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 S ++ + LI++ + +L++DI L + + FH Sbjct: 174 NSDLKVVYVTSEKFTNELINSIRDDNTVKFRNKYRNIDILLIDDIQFLAGKERTQEEFFH 233 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H+ + +++++ P L SR + + I PD + ++ K Sbjct: 234 TFNALHEANKQIIISSDRPPKEIPTLEERLRSRFEWGLITDIQEPDLETRIAILRKKATL 293 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + + ++ YI ++ ++ E + ++ + IT LA E LK+ Sbjct: 294 EDLEVPNEVIVYIANQIHSNIRELEGALIRVVAYSSLTNKEITVELAQEALKD 346 >gi|324111599|gb|EGC05580.1| chromosomal replication initiator protein DnaA [Escherichia fergusonii B253] gi|325499509|gb|EGC97368.1| chromosomal replication initiation protein [Escherichia fergusonii ECD227] Length = 466 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + + D+ + + + A P + L G +G GK+ L + I + Sbjct: 131 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 190 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 191 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 250 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 251 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 310 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 311 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 365 >gi|218551232|ref|YP_002385024.1| chromosomal replication initiation protein [Escherichia fergusonii ATCC 35469] gi|218358774|emb|CAQ91431.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia fergusonii ATCC 35469] Length = 470 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + + D+ + + + A P + L G +G GK+ L + I + Sbjct: 135 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 194 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 195 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 254 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 255 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 314 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 315 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 369 >gi|258510021|ref|YP_003183455.1| chromosomal replication initiator protein DnaA [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257476747|gb|ACV57066.1| chromosomal replication initiator protein DnaA [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 454 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 34/238 (14%), Positives = 85/238 (35%), Gaps = 26/238 (10%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW------- 84 + D ++ + A + P+ + + G G GK+ L + Sbjct: 117 NPRYTFDSFVIGAGNRFAHAACLAVAERPANAYNPLFIYGGVGLGKTHLMHAIGHYVRQH 176 Query: 85 ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128 S++ + + I + V L++DI + + + FH Sbjct: 177 YPNFKVSYISSERFTNEFIAAIRDKNPDSFRARYRTVDVLLIDDIQFIANKEQTQEEFFH 236 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 NS+H+ +++++ P L SR + + I PD + ++ + Sbjct: 237 TFNSLHEVGKQIVISSDRPPREIPTLEDRLRSRFEWGLITDIQPPDLETRIAILQRKAKA 296 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + + + A+I +++ ++ E + ++ + ++ +LA E LK+ + Sbjct: 297 DGLDVPVDVLAFIANQIDSNIRELEGALTRVIAYSSLVKEDLSVALAEEALKDLIHPN 354 >gi|210624036|ref|ZP_03294153.1| hypothetical protein CLOHIR_02105 [Clostridium hiranonis DSM 13275] gi|210153243|gb|EEA84249.1| hypothetical protein CLOHIR_02105 [Clostridium hiranonis DSM 13275] Length = 462 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 32/233 (13%), Positives = 87/233 (37%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW------S 85 + D ++ ++ A + P++ + L G G GK+ L + Sbjct: 127 NPKYTFDTFVIGNSNSFAHAACVAVAESPAKSYNPLFLYGGVGLGKTHLMQAIGHHILEA 186 Query: 86 DKSRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDFND---TQLFH 128 D ++ + + K + ++ +L++D+ + + + FH Sbjct: 187 DSTQKVVYVSSEKFTNELVNSIKDDKNEEFRNKYRNVDVLLIDDVQFIAGKERTQEEFFH 246 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H+ + +++++ P L SR + + I PD + ++ K Sbjct: 247 TFNTLHEANKQIIISSDRPPKDIPTLEERLRSRFEMGLITDIQPPDFETRIAILRKKAQM 306 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + ++ YI + ++ ++ E + ++ + ++ +A E LK+ Sbjct: 307 DNTEVPDEVTDYIAKNVKSNIRELEGALTRVMAYSSLTKKKVSLEVATEALKD 359 >gi|52424540|ref|YP_087677.1| chromosomal replication initiation protein [Mannheimia succiniciproducens MBEL55E] gi|61212538|sp|Q65VB8|DNAA_MANSM RecName: Full=Chromosomal replication initiator protein DnaA gi|52306592|gb|AAU37092.1| DnaA protein [Mannheimia succiniciproducens MBEL55E] Length = 457 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 45/257 (17%), Positives = 99/257 (38%), Gaps = 28/257 (10%) Query: 13 PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVI 68 P + P+N+ Q F ++ + + + A + + P + Sbjct: 101 PVQHSAPMPENEP-QAAFRSNLNQHHLFENFVEGKSNQLARAVGQKVANRPGDKSANPLF 159 Query: 69 LVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLED-------I 116 L G +G GK+ L + I + S + A+ + K +E+ + Sbjct: 160 LYGGTGLGKTHLLHAVGNGIIAGNSNARVVYIHAERFVQEYVKALKAERIENFKKFYRSL 219 Query: 117 DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 D L +D + F+ NS+ + + +++T+ +P L SR Sbjct: 220 DALLIDDIQFFAGKDGTQEEFFNTFNSLFEGEKQIILTSDRYPREIEKIDDRLKSRFSWG 279 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 + I PD + +++K ++ I++ +++A +I Q++ ++ E ++++ A Sbjct: 280 LSIAIEPPDLETRVAILMKKAEEKNIYLPEEVAFFIGQKLRTNVRELEGALNRVHANADF 339 Query: 226 RGMGITRSLAAEVLKET 242 G IT E LK+ Sbjct: 340 TGKAITIDFVRETLKDM 356 >gi|187731749|ref|YP_001882464.1| chromosomal replication initiation protein [Shigella boydii CDC 3083-94] gi|226735848|sp|B2TUS6|DNAA_SHIB3 RecName: Full=Chromosomal replication initiator protein DnaA gi|187428741|gb|ACD08015.1| chromosomal replication initiator protein DnaA [Shigella boydii CDC 3083-94] Length = 467 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + + D+ + + + A P + L G +G GK+ L + I + Sbjct: 132 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 191 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 192 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 251 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 252 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 311 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 312 ENDILLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 366 >gi|170766828|ref|ZP_02901281.1| chromosomal replication initiator protein DnaA [Escherichia albertii TW07627] gi|170124266|gb|EDS93197.1| chromosomal replication initiator protein DnaA [Escherichia albertii TW07627] Length = 467 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + + D+ + + + A P + L G +G GK+ L + I + Sbjct: 132 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 191 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 192 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 251 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 252 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 311 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 312 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 366 >gi|255533487|ref|YP_003093859.1| chromosomal replication initiator protein DnaA [Pedobacter heparinus DSM 2366] gi|255346471|gb|ACU05797.1| chromosomal replication initiator protein DnaA [Pedobacter heparinus DSM 2366] Length = 476 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 39/260 (15%), Positives = 90/260 (34%), Gaps = 39/260 (15%) Query: 10 FFVPDKQK-NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-- 66 F +P +K N P QL + ++ + A + + P Sbjct: 125 FIIPGLKKLNVDP-----QL------NANYTFENYIEGDCNRLARSAGYAVAAKPGGTSF 173 Query: 67 --VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDT 107 +++ G G GK+ LA +K ++ + + ++ Sbjct: 174 NPLMIYGGVGLGKTHLAQAIGNEIKRNMPDKLVIYVSCEKFCQQFVDSLKNNTINDFVNF 233 Query: 108 RKP---VLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161 + ++++D+ + FHI N +HQ +++++ P L SR Sbjct: 234 YQAMDVIIMDDVHNFAGKEKTQDIFFHIFNHLHQSGKQVILSSDKAPKDLAGLEERLLSR 293 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 K + +PD + ++ K I + ++ Y+ ++ ++ E + + Sbjct: 294 FKWGLSADLQVPDLETRIAILRKKMYADGIELPAEVVEYVAHNIDNNVRELEGAMVSLLA 353 Query: 222 LALSRGMGITRSLAAEVLKE 241 + I +LA ++LK Sbjct: 354 QSTLNKKDIDLALAKQMLKN 373 >gi|167764848|ref|ZP_02436969.1| hypothetical protein BACSTE_03240 [Bacteroides stercoris ATCC 43183] gi|167697517|gb|EDS14096.1| hypothetical protein BACSTE_03240 [Bacteroides stercoris ATCC 43183] Length = 463 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 47/267 (17%), Positives = 95/267 (35%), Gaps = 35/267 (13%) Query: 11 FVPDKQKNDQPKNKEEQLF---FSFPR-CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV 66 +P KQ D+ Q+ P + D + + + + + ++ P++ Sbjct: 103 IMPQKQTIDKAIP---QIPVPDLD-PHLNPEYNFDTFIEGYSNKLSRSVAEAVALNPAKT 158 Query: 67 ----VILVGPSGSGKSCLANIWSDK-------SRSTRFSNIA---KSLDSILIDTRKPVL 112 + L G SG GK+ LAN K R S + DS+ +T + Sbjct: 159 IFNPLFLYGASGVGKTHLANAIGTKIKELYPEKRVLYVSAHLFQVQYTDSVRNNTTNDFI 218 Query: 113 -------------LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC 159 +++ + FHI N +HQ L++T+ PV L Sbjct: 219 NFYQTIDILIIDDIQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVLLQGMEERLI 278 Query: 160 SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 +R K V ++ P + + ++ + ++ YI + + S+ E +V + Sbjct: 279 TRFKWGMVAELEKPTVELRKNILRNKIHRDGLQFPPEVIDYIAENVGNSVRDLEGIVISI 338 Query: 220 DNLALSRGMGITRSLAAEVLKETQQCD 246 + I LA ++++ C+ Sbjct: 339 MAHSTIYNKEIDLELAQRIVRKVVNCE 365 >gi|300853233|ref|YP_003778217.1| putative chromosomal replication initiator protein [Clostridium ljungdahlii DSM 13528] gi|300433348|gb|ADK13115.1| predicted chromosomal replication initiator protein [Clostridium ljungdahlii DSM 13528] Length = 450 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 36/233 (15%), Positives = 89/233 (38%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW------- 84 + D ++ ++ A + PS+ + + G G GK+ L + Sbjct: 114 NPKYTFDSFVIGNSNRFAHAASLAVAESPSKAYNPLFIYGGVGLGKTHLMHAIGHYILNN 173 Query: 85 ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128 S+K + ++I + + + + L++DI + + + FH Sbjct: 174 NSKSKVVYVSSEKFTNELINSIKDDKNVEFRNKYRNIDVLLIDDIQFIAGKERTQEEFFH 233 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++++ + +++++ P L SR + + I PD + ++ K Sbjct: 234 TFNALYEANKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQPPDFETRMAILKKKADV 293 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I ++ YI +++ ++ E + ++ + I+ LA E LK+ Sbjct: 294 ENLNIPNEVMVYIATKIKSNIRELEGALIRIVAFSSLTNKEISIDLAVEALKD 346 >gi|260774981|ref|ZP_05883881.1| chromosomal replication initiator protein dnaA [Vibrio coralliilyticus ATCC BAA-450] gi|260609071|gb|EEX35230.1| chromosomal replication initiator protein dnaA [Vibrio coralliilyticus ATCC BAA-450] Length = 459 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 38/227 (16%), Positives = 87/227 (38%), Gaps = 26/227 (11%) Query: 42 DLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK----------- 87 + + + + + P + L G +G GK+ L + + Sbjct: 132 NFVEGKSNQLGLAAARQVADNPGAAYNPLFLYGGTGLGKTHLLHAVGNAIVDNKPNAKVV 191 Query: 88 --SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLFHIINSIHQ 135 ++ K+L + I+ + +L++DI + + FH N++ + Sbjct: 192 YMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLE 251 Query: 136 YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195 + +++T+ +P L SR V I P+ + +++K D QI + Sbjct: 252 GNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAEDHQIHLAD 311 Query: 196 KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 312 EVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 358 >gi|54307245|ref|YP_128265.1| chromosomal replication initiation protein [Photobacterium profundum SS9] gi|61212603|sp|Q6LW50|DNAA_PHOPR RecName: Full=Chromosomal replication initiator protein DnaA gi|46911665|emb|CAG18463.1| Putative DnaA chromosomal replication initiator protein [Photobacterium profundum SS9] Length = 474 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 92/235 (39%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI----WSD 86 + ++ + + + A R + P + L G +G GK+ L + +D Sbjct: 139 VNPKHNFNNFVEGKSNQLGLAACRQVSDNPGAAYNPLFLYGGTGLGKTHLLHAVGNAIAD 198 Query: 87 K---------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 + ++ K+L + I+ + +L++DI + + F Sbjct: 199 RKPNARVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 258 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 259 HTFNALLEGNQQIILTSDRYPREINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAE 318 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 319 NHNIRLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 373 >gi|260870433|ref|YP_003236835.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli O111:H- str. 11128] gi|257766789|dbj|BAI38284.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli O111:H- str. 11128] Length = 467 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + + D+ + + + A P + L G +G GK+ L + I + Sbjct: 132 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 191 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 192 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 251 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 252 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILIKKAD 311 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 312 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 366 >gi|260063127|ref|YP_003196207.1| chromosomal replication initiation protein [Robiginitalea biformata HTCC2501] gi|88784696|gb|EAR15866.1| chromosomal replication initiation protein [Robiginitalea biformata HTCC2501] Length = 474 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 40/259 (15%), Positives = 94/259 (36%), Gaps = 37/259 (14%) Query: 10 FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66 F +P + E QL + ++ L + A + + P Sbjct: 125 FVIPGIRNI----KIESQL------NPSYNFENFLEGDSNRLARSAGMAVANKPGGTSFN 174 Query: 67 -VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTR 108 +++ G G GK+ LA+ ++K ++ K+ + I Sbjct: 175 PLLVFGGVGLGKTHLAHAIGVEIKDKYPERTVLYISAEKFTQQYIESVRKNTRNDFIHFY 234 Query: 109 KPV---LLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 + + +++D+ L FHI N +HQ +++T+ PV L SR Sbjct: 235 QLIDVLIIDDVQFLSGKSGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSRF 294 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 K ++ PD + ++ + + +++ Y+ + ++ ++ E + + Sbjct: 295 KWGLSAELQSPDYETRVCILKNKLYRDGVEMPEEIIDYVAKHIKSNIRELEGAIISLIAQ 354 Query: 223 ALSRGMGITRSLAAEVLKE 241 + +T LA +V+++ Sbjct: 355 SSFNKKEVTLDLAQQVVEK 373 >gi|209693643|ref|YP_002261571.1| chromosomal replication initiation protein [Aliivibrio salmonicida LFI1238] gi|226735772|sp|B6EP46|DNAA_ALISL RecName: Full=Chromosomal replication initiator protein DnaA gi|208007594|emb|CAQ77694.1| chromosomal replication initiator protein DnaA [Aliivibrio salmonicida LFI1238] Length = 468 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 40/242 (16%), Positives = 88/242 (36%), Gaps = 30/242 (12%) Query: 31 SFPRC----LGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLAN- 82 + + + + + P + L G +G GK+ L Sbjct: 126 DLNHRSNVNPKHKFTNFVEGKSNQLGLAAARQVSDNPGTAYNPLFLYGGTGLGKTHLLQA 185 Query: 83 ----IWSDKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND 123 I K + ++ K+L + I+ + +L++DI + Sbjct: 186 VGNAILERKPNAKVVYMHSERFVQDMVKALQNNAIEEFKCYYRSVDALLIDDIQFFANKE 245 Query: 124 ---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 + FH N++ + + +++T+ +P L SR V I P+ + Sbjct: 246 RSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVA 305 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 +++K D QI + ++A +I +R+ ++ E ++++ A G IT E L+ Sbjct: 306 ILMKKAEDHQIHLADEVAFFIAKRLRSNVRELEGALNRVVANANFTGRAITIDFVREALR 365 Query: 241 ET 242 + Sbjct: 366 DL 367 >gi|51891139|ref|YP_073830.1| chromosomal replication initiation protein [Symbiobacterium thermophilum IAM 14863] gi|61212552|sp|Q67TK7|DNAA_SYMTH RecName: Full=Chromosomal replication initiator protein DnaA gi|51854828|dbj|BAD38986.1| chromosomal replication initiation protein [Symbiobacterium thermophilum IAM 14863] Length = 458 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 36/237 (15%), Positives = 86/237 (36%), Gaps = 26/237 (10%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW------S 85 + + +V ++ A + P+R + + G G GK+ L + Sbjct: 122 NPKYTFETFVVGNSNRFAHAAALAVAETPARTYNPLFIYGGVGLGKTHLMHAIGHYVLQH 181 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128 + + + + + ++ +K +L++DI L + + +H Sbjct: 182 NPTAKVAYVSTETFTNEFIMAIQKGSTTAFQNRYRKVDVLLIDDIQFLAGKEATQEEFYH 241 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N+I + + +++++ P L SR + + I PD + ++ K Sbjct: 242 TFNAIREANKQIVISSDRPPKEIPTLEDRLRSRFEWGLICDIQPPDLETRTAILRKKAQS 301 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 I + ++ YI +E ++ E + ++ A +T LA + LK+ Sbjct: 302 EGIQVPDEVTNYIATNIETNIRELEGALTRVVAYANMLKCPLTYDLAVQALKDILPP 358 >gi|330685249|gb|EGG96910.1| chromosomal replication initiator protein DnaA [Staphylococcus epidermidis VCU121] Length = 454 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 45/257 (17%), Positives = 94/257 (36%), Gaps = 35/257 (13%) Query: 16 QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGP 72 Q D P E+ + D ++ A + P+ + + G Sbjct: 106 QNVDNPGGIEQ-------FNTHNTFDTFVIGPGNRFPHAASLAVAEAPAEAYNPLFIYGG 158 Query: 73 SGSGKSCLANIWSDKS-----RSTRFSNIAKSLDSILIDTRK---------------PVL 112 G GK+ L + + ++ + I + + +L Sbjct: 159 VGLGKTHLMHAIGHHVLDNNPNANVIYTSSEKFTNEFIKSIRDNQGDAFREKYRNIDVLL 218 Query: 113 LEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVV 168 ++DI + + + FH N +H + +++++ P L D L SR + +V Sbjct: 219 IDDIQFIQNKEQTQEEFFHTFNELHNNNKQIVISSDRPPKEIS-KLSDRLRSRFEWGLIV 277 Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228 I+ PD + ++ K + + I + YI +++ ++ E + ++ + +G Sbjct: 278 DITPPDYETRMAILQKKIEEENLDIPMESLNYIANQIQSNIRELEGALTRLLAYSQLQGK 337 Query: 229 GITRSLAAEVLKETQQC 245 IT LAAE LK+ Q Sbjct: 338 PITTELAAEALKDIIQA 354 >gi|239637286|ref|ZP_04678273.1| chromosomal replication initiator protein DnaA [Staphylococcus warneri L37603] gi|239597123|gb|EEQ79633.1| chromosomal replication initiator protein DnaA [Staphylococcus warneri L37603] Length = 454 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 45/257 (17%), Positives = 94/257 (36%), Gaps = 35/257 (13%) Query: 16 QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGP 72 Q D P E+ + D ++ A + P+ + + G Sbjct: 106 QNVDNPGGIEQ-------FNTHNTFDTFVIGPGNRFPHAASLAVAEAPAEAYNPLFIYGG 158 Query: 73 SGSGKSCLANIWSDKS-----RSTRFSNIAKSLDSILIDTRK---------------PVL 112 G GK+ L + + ++ + I + + +L Sbjct: 159 VGLGKTHLMHAIGHHVLDNNPNANVIYTSSEKFTNEFIKSIRDNQGDAFREKYRNIDVLL 218 Query: 113 LEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVV 168 ++DI + + + FH N +H + +++++ P L D L SR + +V Sbjct: 219 IDDIQFIQNKEQTQEEFFHTFNELHNNNKQIVISSDRPPKEIS-KLSDRLRSRFEWGLIV 277 Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228 I+ PD + ++ K + + I + YI +++ ++ E + ++ + +G Sbjct: 278 DITPPDYETRMAILQKKIEEENLDIPMESLNYIANQIQSNIRELEGALTRLLAYSQLQGK 337 Query: 229 GITRSLAAEVLKETQQC 245 IT LAAE LK+ Q Sbjct: 338 PITTELAAEALKDIIQA 354 >gi|297616215|ref|YP_003701374.1| chromosomal replication initiator protein DnaA [Syntrophothermus lipocalidus DSM 12680] gi|297144052|gb|ADI00809.1| chromosomal replication initiator protein DnaA [Syntrophothermus lipocalidus DSM 12680] Length = 436 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 37/232 (15%), Positives = 84/232 (36%), Gaps = 26/232 (11%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIW--------- 84 + D +V ++ A + PS + + G G GK+ L Sbjct: 97 KYTFDTFVVGNSNRFAHAACYAVAEAPSDSYNPLFIYGGVGLGKTHLMQAIGHHILRKDP 156 Query: 85 --------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFHII 130 S++ + +I + + + V L++DI + + + FH Sbjct: 157 SYKIVYVSSEQFTNDLIDSIRDRKTAEFRNKYRSVDLLLVDDIQFVAGKEQTQEEFFHTF 216 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N++++ + L++++ P L SR + + I PD + ++ K Sbjct: 217 NALYEANKQLVISSDRPPRDIPTLEDRLRSRFEWGLITDIQPPDFETRLAILRKKAQLEN 276 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + +YI ++ ++ E + ++ A +T LA + LK+ Sbjct: 277 FNVPNDVMSYIADYIQSNIRELEGALIRIVAYANISNQPVTLELAEQTLKDV 328 >gi|15893299|ref|NP_346648.1| chromosomal replication initiation protein [Clostridium acetobutylicum ATCC 824] gi|38257741|sp|Q97N35|DNAA_CLOAB RecName: Full=Chromosomal replication initiator protein DnaA gi|15022818|gb|AAK77988.1|AE007513_1 DNA replication initiator protein, ATPase [Clostridium acetobutylicum ATCC 824] gi|325507408|gb|ADZ19044.1| chromosomal replication initiation protein [Clostridium acetobutylicum EA 2018] Length = 446 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 36/233 (15%), Positives = 87/233 (37%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW------- 84 D ++ ++ A + P++ + + G G GK+ L Sbjct: 110 NPKYKFDSFVIGNSNRFAHAACLAVAEAPAKAYNPLFIYGGVGLGKTHLMQAIGHYILDN 169 Query: 85 ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128 S+K + ++I + + + V L++D+ + + + FH Sbjct: 170 NPKAKVVYVSSEKFTNELINSIKDDKNVEFRNKYRNVDVLLIDDVQFIAGKERTQEEFFH 229 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H+ + +++++ P L SR + + I PD + ++ K Sbjct: 230 TFNALHENNKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDFETRIAILKKKADV 289 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I + YI +++ ++ E + ++ + I+ LA+E LK+ Sbjct: 290 EHLNIPNDVMVYIATQIKSNIRELEGALIRIVAFSSLTNKEISVDLASEALKD 342 >gi|163802133|ref|ZP_02196028.1| chromosomal replication initiation protein [Vibrio sp. AND4] gi|159173938|gb|EDP58748.1| chromosomal replication initiation protein [Vibrio sp. AND4] Length = 468 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 89/235 (37%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--- 87 ++ + + + A R + P + L G +G GK+ L + + Sbjct: 133 VNPKHKFNNFVEGKSNQLGLAAARQVSDNPGAAYNPLFLYGGTGLGKTHLLHAVGNAIVD 192 Query: 88 ----------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 ++ K+L + I+ + +L++DI + + F Sbjct: 193 NNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 252 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 253 HTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAE 312 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 QI + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 313 AHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 367 >gi|319788988|ref|YP_004150621.1| chromosomal replication initiator protein DnaA [Thermovibrio ammonificans HB-1] gi|317113490|gb|ADU95980.1| chromosomal replication initiator protein DnaA [Thermovibrio ammonificans HB-1] Length = 471 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 41/279 (14%), Positives = 88/279 (31%), Gaps = 46/279 (16%) Query: 10 FFVPDKQKNDQPKNK-----EEQLFFSF-------------PRCLGISRDDLLVHSAIEQ 51 F P K + P +QL + ++ +V ++ + Sbjct: 66 VFGPVKVEFTVPSEPVKTPQPQQLELGLFKKSQKKEEELQSNLNPKYTFENFIVGTSNQF 125 Query: 52 AVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI---------------------WSDK 87 A + P + + + G G GK+ L + ++ Sbjct: 126 AHAAALAVAENPGKAYNPLFIYGGVGLGKTHLMQAIGNYIKKKSPWKKVIYVTTETFMNQ 185 Query: 88 SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTA 144 S+ S +L++DI + + + FH N+++ +++T+ Sbjct: 186 LIEALKSDNISSFREKY-RNIDVLLIDDIQFIGGKERTQIEFFHTFNALYDAGKQVVLTS 244 Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 P L SR + + I PD + ++ + I + K+ I Sbjct: 245 DRPPKDIPTLTERLRSRFEWGLIADIQPPDFETRVAILKRKAELEGIEVSDKVIKLIATI 304 Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 ++ ++ E + K+ A G IT L E+ + Sbjct: 305 IKSNIRQLEGALIKLKAKATLEGKPITERLVRELFSQES 343 >gi|315650192|ref|ZP_07903267.1| DNA-directed DNA replication initiator protein [Eubacterium saburreum DSM 3986] gi|315487549|gb|EFU77857.1| DNA-directed DNA replication initiator protein [Eubacterium saburreum DSM 3986] Length = 462 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 43/244 (17%), Positives = 90/244 (36%), Gaps = 32/244 (13%) Query: 35 CLGISRDDLLVHSAI----EQAVRLIDSW----PSWPSRVVILVGPSGSGKSCLAN---- 82 + D +V + A+ + +S P + G G GK+ L + Sbjct: 120 NPAYTFDTFVVGKSNDLAHATAIAVAESPGSQNPGEHYNPFFIYGGVGLGKTHLMHSIAH 179 Query: 83 -IWSDKSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND--- 123 I + ++ + ID K +L++DI + D Sbjct: 180 YILEHNPDANILYVSSEKFLNEYIDALKNSNLAEYRAKYRNVDVLLIDDIQFIGGKDAIQ 239 Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 +LFH N++++ +++++ P+ L SR V+I PD + ++ Sbjct: 240 EELFHTFNALYEQKKQIILSSDKPPMELKNLEERLRSRFAWGVAVEIFSPDFETRMAILR 299 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA-LSRGMGITRSLAAEVLKET 242 ID ++ +I ++ ++ E ++K+ ++ L++ I LA VLK+ Sbjct: 300 SKEERDGKNIDNEVIQFIATNIKSNIRMLEGALNKLYAMSRLNKNQEIDIDLAKSVLKDM 359 Query: 243 QQCD 246 D Sbjct: 360 ITPD 363 >gi|218128622|ref|ZP_03457426.1| hypothetical protein BACEGG_00192 [Bacteroides eggerthii DSM 20697] gi|317475576|ref|ZP_07934838.1| chromosomal replication initiator protein DnaA [Bacteroides eggerthii 1_2_48FAA] gi|217989224|gb|EEC55538.1| hypothetical protein BACEGG_00192 [Bacteroides eggerthii DSM 20697] gi|316908280|gb|EFV29972.1| chromosomal replication initiator protein DnaA [Bacteroides eggerthii 1_2_48FAA] Length = 464 Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 42/242 (17%), Positives = 87/242 (35%), Gaps = 28/242 (11%) Query: 33 PR-CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV----VILVGPSGSGKSCLANIWSDK 87 P + D + + + + + ++ P++ + L G SG GK+ LAN K Sbjct: 124 PHLNPEYNFDTFIEGYSNKLSRSVAEAVALNPAKTIFNPLFLYGASGVGKTHLANAIGTK 183 Query: 88 -------SRSTRFSNIA---KSLDSILIDTRKPVL-------------LEDIDLLDFNDT 124 R S + DS+ +T + +++ + Sbjct: 184 IKELYPEKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQTIDILIIDDIQEFAGVTKTQN 243 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 FHI N +HQ L++T+ PV L +R K V ++ P + + ++ Sbjct: 244 TFFHIFNHLHQNGKQLILTSDRAPVLLQGMEERLITRFKWGMVAELEKPTVELRKNILRN 303 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 + ++ YI + + S+ E +V + + I LA ++++ Sbjct: 304 KIHRDGLQFPPEVIDYIAENVGNSVRDLEGIVISIMAHSTIYNKEIDLELAQRIVRKVVN 363 Query: 245 CD 246 C+ Sbjct: 364 CE 365 >gi|311070648|ref|YP_003975571.1| chromosomal replication initiation protein [Bacillus atrophaeus 1942] gi|310871165|gb|ADP34640.1| chromosomal replication initiation protein [Bacillus atrophaeus 1942] Length = 446 Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 46/267 (17%), Positives = 97/267 (36%), Gaps = 35/267 (13%) Query: 10 FFVPDKQKNDQ--PKNK----EEQLFFSFP---RCLGISRDDLLVHSAIEQAVRLIDSWP 60 F +P Q + PK ++ FP + D ++ S A + Sbjct: 78 FVIPQNQDEEDFMPKPPIKKVAKEEPSDFPQNMLNPKYTFDTFVIGSGNRFAHAASLAVA 137 Query: 61 SWPSRV---VILVGPSGSGKSCLANIW------SDKSRSTRFSNIAKSLDSILIDTR--- 108 P++ + + G G GK+ L + + S + + K + + R Sbjct: 138 EAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIDHNPSAKVVYLSSEKFTNEFINSIRDNK 197 Query: 109 -----------KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 +L++DI L + + FH N++H+ +++++ P Sbjct: 198 AVDFRNRYRNVDVLLIDDIQFLAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTL 257 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 L SR + + I+ PD + ++ K + I ++ YI +++ ++ E Sbjct: 258 EDRLRSRFEWGLITDITPPDLETRIAILRKKAKAEGLDIPNEVMLYIANQIDSNIRELEG 317 Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKE 241 + ++ + I LAAE LK+ Sbjct: 318 ALIRVVAYSSLINKDINADLAAEALKD 344 >gi|308171892|ref|YP_003918597.1| chromosomal replication initiator protein DnaA [Bacillus amyloliquefaciens DSM 7] gi|307604756|emb|CBI41127.1| chromosomal replication initiator protein DnaA [Bacillus amyloliquefaciens DSM 7] gi|328909960|gb|AEB61556.1| chromosomal replication initiator protein DnaA [Bacillus amyloliquefaciens LL3] Length = 446 Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 45/267 (16%), Positives = 96/267 (35%), Gaps = 35/267 (13%) Query: 10 FFVPDKQKNDQPKNKEE------QLFFSFP---RCLGISRDDLLVHSAIEQAVRLIDSWP 60 F +P Q + K + + FP + D ++ S A + Sbjct: 78 FVIPQNQDEENFMPKPQVKKAAKEEPSDFPQSMLNPKYTFDTFVIGSGNRFAHAASLAVA 137 Query: 61 SWPSRV---VILVGPSGSGKSCLANIW------SDKSRSTRFSNIAKSLDSILIDTR--- 108 P++ + + G G GK+ L + + S + + K + + R Sbjct: 138 EAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIDHNPSAKVVYLSSEKFTNEFINSIRDNK 197 Query: 109 -----------KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 +L++DI L + + FH N++H+ +++++ P Sbjct: 198 AVDFRNRYRNVDVLLIDDIQFLAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTL 257 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 L SR + + I+ PD + ++ K + I ++ YI +++ ++ E Sbjct: 258 EDRLRSRFEWGLITDITPPDLETRIAILRKKAKAEGLDIPNEVMLYIANQIDSNIRELEG 317 Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKE 241 + ++ + I LAAE LK+ Sbjct: 318 ALIRVVAYSSLINKDINADLAAEALKD 344 >gi|328551701|gb|AEB22193.1| chromosomal replication initiation protein [Bacillus amyloliquefaciens TA208] Length = 446 Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 45/267 (16%), Positives = 96/267 (35%), Gaps = 35/267 (13%) Query: 10 FFVPDKQKNDQPKNKEE------QLFFSFP---RCLGISRDDLLVHSAIEQAVRLIDSWP 60 F +P Q + K + + FP + D ++ S A + Sbjct: 78 FVIPQNQDEENFMPKPQVEKAAKEEPSDFPQSMLNPKYTFDTFVIGSGNRFAHAASLAVA 137 Query: 61 SWPSRV---VILVGPSGSGKSCLANIW------SDKSRSTRFSNIAKSLDSILIDTR--- 108 P++ + + G G GK+ L + + S + + K + + R Sbjct: 138 EAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIDHNPSAKVVYLSSEKFTNEFINSIRDNK 197 Query: 109 -----------KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 +L++DI L + + FH N++H+ +++++ P Sbjct: 198 AVDFRNRYRNVDVLLIDDIQFLAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTL 257 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 L SR + + I+ PD + ++ K + I ++ YI +++ ++ E Sbjct: 258 EDRLRSRFEWGLITDITPPDLETRIAILRKKAKAEGLDIPNEVMLYIANQIDSNIRELEG 317 Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKE 241 + ++ + I LAAE LK+ Sbjct: 318 ALIRVVAYSSLINKDINADLAAEALKD 344 >gi|121998017|ref|YP_001002804.1| chromosomal replication initiation protein [Halorhodospira halophila SL1] gi|166214674|sp|A1WWE0|DNAA_HALHL RecName: Full=Chromosomal replication initiator protein DnaA gi|121589422|gb|ABM62002.1| chromosomal replication initiator protein DnaA [Halorhodospira halophila SL1] Length = 449 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 40/250 (16%), Positives = 82/250 (32%), Gaps = 26/250 (10%) Query: 19 DQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGS 75 Q ++ Q G + D + + + A P + L G G Sbjct: 99 AQRSSEPRQRPVDSNLNPGFTFDSFVEGKSNQLARAASMQVADNPGGAYNPLFLYGGVGL 158 Query: 76 GKSCLANIWSDKSRSTRFSNIAKSLDSILIDTR--------------------KPVLLED 115 GK+ L + + R+ R L S +L++D Sbjct: 159 GKTHLMHAVGNAIRTARPEARVLYLHSERFVAEMVKALQHNAINEFKRHYRNLDALLIDD 218 Query: 116 IDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 I + + FH N++ + + ++MT +P L SR V I Sbjct: 219 IQFFAGKERSQEEFFHTFNALLESEQQVIMTCDRYPKEVNGLEERLKSRFGWGLTVAIEP 278 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232 P+ + ++ + + ++A ++ +R+ ++ E + ++ A G I Sbjct: 279 PELETRVAILKSKAIRDGVDLPDEVAFFVAKRLRSNVRELEGALRRITANAQFTGRAIDV 338 Query: 233 SLAAEVLKET 242 A E L++ Sbjct: 339 DFAKEALRDL 348 >gi|254457518|ref|ZP_05070946.1| chromosomal replication initiator protein DnaA [Campylobacterales bacterium GD 1] gi|207086310|gb|EDZ63594.1| chromosomal replication initiator protein DnaA [Campylobacterales bacterium GD 1] Length = 435 Score = 118 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 46/255 (18%), Positives = 98/255 (38%), Gaps = 27/255 (10%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILV 70 DK+ Q ++ Q + D+ +V + + A + S P V + + Sbjct: 83 DKRIKLQKTEQKLQHSL---LNPSHTFDNFMVGGSNQFAYAAVKSVSESPGEVYNPLFIY 139 Query: 71 GPSGSGKSCLAN----IWSDKSRSTRFSNIAKSLDSILIDTRK--------------PVL 112 G G GK+ L ++ ++ +S ++++ + L+ + R +L Sbjct: 140 GGVGLGKTHLMQSAGNVFQNQGKSVIYTSVEQFLNDFIRHVRNKTMPSFQEKYRKCDVLL 199 Query: 113 LEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 ++DI L + + FH ++ +++TA P G L SR + V Sbjct: 200 IDDIQFLSNKEGIQEEFFHTFEALKGSGKQIILTADKHPKKIGGLEKRLQSRFEWGLVAD 259 Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229 I P+ + +I K ++ + + YI +E ++ E ++ K+ + + Sbjct: 260 IQPPELETKIAIIKKKCEINKVKLSNDIINYIATVIESNVREIEGILSKLHAYSQLMHID 319 Query: 230 ITRSLAAEVLKETQQ 244 I + VLK+ Q Sbjct: 320 IDLAFTKNVLKDQLQ 334 >gi|317046239|ref|YP_004113887.1| chromosomal replication initiator protein DnaA [Pantoea sp. At-9b] gi|316947856|gb|ADU67331.1| chromosomal replication initiator protein DnaA [Pantoea sp. At-9b] Length = 466 Score = 118 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 91/235 (38%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + D+ + + + A P + L G +G GK+ L + I + Sbjct: 131 VNNRHNFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 190 Query: 86 DKSRS--------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLF 127 K + ++ K+L + I+ + +L++DI + + F Sbjct: 191 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 250 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T+ +P L SR V I P+ + +++K Sbjct: 251 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAD 310 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 311 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 365 >gi|331083519|ref|ZP_08332631.1| chromosomal replication initiator protein dnaA [Lachnospiraceae bacterium 6_1_63FAA] gi|330404212|gb|EGG83760.1| chromosomal replication initiator protein dnaA [Lachnospiraceae bacterium 6_1_63FAA] Length = 454 Score = 118 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 47/268 (17%), Positives = 99/268 (36%), Gaps = 35/268 (13%) Query: 9 SFFVPDKQKND---QPKNKEEQLFFSF---PRCLGISRDDLLVHSAIEQAVRL---IDSW 59 S +P+ K + P L + + D +V + + A + Sbjct: 80 SLVLPEDIKEEFKEPPAAAPVSLNENIEKANLNPRYTFDTFVVGNNNKMAHAASLAVAES 139 Query: 60 PSWPSRVVILVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDTRK----- 109 P + + G G GK+ L + + + ++ + LID+ + Sbjct: 140 PGEAYNPLFIYGGVGLGKTHLMHSIAHFVLQKNPSAKVLYVTSEYFTNELIDSIRNGNNT 199 Query: 110 -------------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 +L++DI + + + FH N++H +++++ P + Sbjct: 200 TMSKFREKYRNIDVLLIDDIQFIIGKESTQEEFFHTFNALHGAKKQIVISSDKPPKDMEI 259 Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213 L SR + +V IS PD + ++ K ID ++ YI + ++ ++ E Sbjct: 260 LEDRLRSRFEWGLIVDISSPDYETRMAILRKKEELDGYKIDDEVIEYIAKNVKSNIRELE 319 Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++K+ A I +LA +VLK+ Sbjct: 320 GSLNKIMAYANLEKSEINLALAEKVLKD 347 >gi|302872923|ref|YP_003841556.1| chromosomal replication initiator protein DnaA [Clostridium cellulovorans 743B] gi|307687876|ref|ZP_07630322.1| chromosomal replication initiation protein [Clostridium cellulovorans 743B] gi|302575780|gb|ADL49792.1| chromosomal replication initiator protein DnaA [Clostridium cellulovorans 743B] Length = 451 Score = 118 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 33/233 (14%), Positives = 88/233 (37%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW------- 84 + + ++ ++ A + P++ + + G G GK+ L + Sbjct: 115 NPKYTFNSFVIGNSNRFAHAACLAVAESPAKAYNPLFIYGGVGLGKTHLMHAIGHYILKN 174 Query: 85 ----------SDKSRSTRFSNIAKSLDSILIDTRK---PVLLEDIDLLDFND---TQLFH 128 S+K + ++I + + + +L++DI + + + FH Sbjct: 175 NSKAKVAYVSSEKFTNELINSIKDDKNEEFRNKYRNVDLLLIDDIQFIAGKERTQEEFFH 234 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N+++ + +++++ P L SR + + I PD + ++ K Sbjct: 235 TFNALYDANKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQPPDFETRIAILKKKADV 294 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++ + ++ YI ++ ++ E + ++ + I+ LA E LK+ Sbjct: 295 EKLNVPNEVLTYIATTIKSNIRELEGALIRIVAFSSLTNKEISVDLAQEALKD 347 >gi|326797445|ref|YP_004315264.1| Chromosomal replication initiator protein dnaA [Sphingobacterium sp. 21] gi|326548209|gb|ADZ76594.1| Chromosomal replication initiator protein dnaA [Sphingobacterium sp. 21] Length = 476 Score = 118 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 41/260 (15%), Positives = 86/260 (33%), Gaps = 39/260 (15%) Query: 10 FFVPDKQKND-QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQA----VRLIDSWPSWPS 64 F +P +K P QL + D+ + A + Sbjct: 125 FVIPGLKKLQVDP-----QL------NQNYTFDNFIEGDCNRLARSAGFAVASKPGGTSF 173 Query: 65 RVVILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDT 107 +++ G G GK+ LA +K ++ + + ++ Sbjct: 174 NPLMIYGGVGLGKTHLAQAIGNEVKRHMPDKLVIYVSCEKFCQQFVDSLKNNTINDFVNF 233 Query: 108 RKP---VLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161 + ++++D+ D FHI N +HQ +++T+ P L SR Sbjct: 234 YQAMDVIIMDDVHNFAGKDKTQDIFFHIFNHLHQSGKQIILTSDKAPKDLAGLEERLLSR 293 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 K + +PD + ++ K I + ++ Y+ ++ ++ E + + Sbjct: 294 FKWGLSADMQVPDLETRMAILKKKMYADGIELPYEVVEYVANNIDNNVRELEGAMVSLLA 353 Query: 222 LALSRGMGITRSLAAEVLKE 241 A I +LA +LK Sbjct: 354 QATLNKKEIDLNLAKSMLKN 373 >gi|298209110|ref|YP_003717289.1| chromosomal replication initiation protein [Croceibacter atlanticus HTCC2559] gi|83849037|gb|EAP86906.1| chromosomal replication initiation protein [Croceibacter atlanticus HTCC2559] Length = 475 Score = 118 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 42/260 (16%), Positives = 88/260 (33%), Gaps = 37/260 (14%) Query: 10 FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66 F +P + E QL + + L + A + + P Sbjct: 125 FIIPGIRNV----KIESQL------NPNYNFESFLEGDSNRLARSAGMAVANKPGGTSFN 174 Query: 67 -VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTR 108 +++ G G GK+ LA+ ++K ++ K+ + I Sbjct: 175 PLLIFGGVGLGKTHLAHAIGVEIKDKYPEKTVLYISAEKFTQQYIESVKKNNRNDFIHFY 234 Query: 109 ---KPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 ++++DI LL FHI N +HQ +++T+ PV L SR Sbjct: 235 QIIDVLIVDDIQLLSGKAGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSRF 294 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 K ++ PD + +I + + + + ++ ++ ++ E + + Sbjct: 295 KWGLSAELQHPDFETRIAIIKSKLYRDGVEMPEDIVEFLANNIKTNIRELEGAIISLIAH 354 Query: 223 ALSRGMGITRSLAAEVLKET 242 + IT LA ++ Sbjct: 355 SSFNKKDITLELAKSIVDNY 374 >gi|260588817|ref|ZP_05854730.1| DNA replication initiator protein, ATPase [Blautia hansenii DSM 20583] gi|260540596|gb|EEX21165.1| DNA replication initiator protein, ATPase [Blautia hansenii DSM 20583] Length = 456 Score = 118 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 47/268 (17%), Positives = 99/268 (36%), Gaps = 35/268 (13%) Query: 9 SFFVPDKQKND---QPKNKEEQLFFSF---PRCLGISRDDLLVHSAIEQAVRL---IDSW 59 S +P+ K + P L + + D +V + + A + Sbjct: 82 SLVLPEDIKEEFKEPPTAAPVSLNENIEKANLNPRYTFDTFVVGNNNKMAHAASLAVAES 141 Query: 60 PSWPSRVVILVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDTRK----- 109 P + + G G GK+ L + + + ++ + LID+ + Sbjct: 142 PGEAYNPLFIYGGVGLGKTHLMHSIAHFVLQKNPSAKVLYVTSEYFTNELIDSIRNGNNT 201 Query: 110 -------------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 +L++DI + + + FH N++H +++++ P + Sbjct: 202 TMSKFREKYRNIDVLLIDDIQFIIGKESTQEEFFHTFNALHGAKKQIVISSDKPPKDMEI 261 Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213 L SR + +V IS PD + ++ K ID ++ YI + ++ ++ E Sbjct: 262 LEDRLRSRFEWGLIVDISSPDYETRMAILRKKEELDGYKIDDEVIEYIAKNVKSNIRELE 321 Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++K+ A I +LA +VLK+ Sbjct: 322 GSLNKIMAYANLEKSEINLALAEKVLKD 349 >gi|262375589|ref|ZP_06068822.1| DnaA regulatory inactivator Hda [Acinetobacter lwoffii SH145] gi|262309843|gb|EEY90973.1| DnaA regulatory inactivator Hda [Acinetobacter lwoffii SH145] Length = 234 Score = 118 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 83/228 (36%), Gaps = 18/228 (7%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 QL L D + I + + G +G+GKS L + Sbjct: 2 RQLQLDIEPQLDARISDF-SGPGWGHVIDAIRQLHAGLINRFYIYGGAGTGKSHLLSAIC 60 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKP---------VLLEDIDLLDF---NDTQLFHIINSI 133 D S I SL +L + V L+DI+ + +FH+IN Sbjct: 61 DSYLEVGKSAIQVSLLELLDAPTEAITSLDRFDLVALDDIEAISGVPHWQRAVFHLINYN 120 Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF---LEKVIVKMFADRQ 190 ++ L+ ++R P+ + LPDL SRL A ++ P ++ + R Sbjct: 121 NEGGGQLVFSSRFAPIELKLELPDLQSRLTQAVSTRV--PSGSLYADRYALVSSVLDRRG 178 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238 I +D ++ Y++ + ++++ L + ++ + ++ Sbjct: 179 IHLDPQIFDYLLSHGPHQTSVLLQRLEQIIQLLKGEKLKVSNANLRQI 226 >gi|52078492|ref|YP_077283.1| chromosomal replication initiation protein [Bacillus licheniformis ATCC 14580] gi|52783856|ref|YP_089685.1| chromosomal replication initiation protein [Bacillus licheniformis ATCC 14580] gi|319648518|ref|ZP_08002734.1| chromosomal replication initiator protein dnaA [Bacillus sp. BT1B_CT2] gi|71151793|sp|Q65PM2|DNAA_BACLD RecName: Full=Chromosomal replication initiator protein DnaA gi|52001703|gb|AAU21645.1| DnaA [Bacillus licheniformis ATCC 14580] gi|52346358|gb|AAU38992.1| DnaA [Bacillus licheniformis ATCC 14580] gi|317389597|gb|EFV70408.1| chromosomal replication initiator protein dnaA [Bacillus sp. BT1B_CT2] Length = 446 Score = 118 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 46/267 (17%), Positives = 99/267 (37%), Gaps = 35/267 (13%) Query: 10 FFVPDKQKNDQ--PKNKEEQL----FFSFP---RCLGISRDDLLVHSAIEQAVRLIDSWP 60 F +P Q + PK+ +++ FP + D ++ S A + Sbjct: 78 FVIPQNQNEEDFMPKSPIKKMSKEEPADFPQNMLNPKYTFDTFVIGSGNRFAHAASLAVA 137 Query: 61 SWPSRV---VILVGPSGSGKSCLANIW------SDKSRSTRFSNIAKSLDSILIDTR--- 108 P++ + + G G GK+ L + + S + + K + + R Sbjct: 138 EAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIDHNPSAKVVYLSSEKFTNEFINSIRDNK 197 Query: 109 -----------KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 +L++DI L + + FH N++H+ +++++ P Sbjct: 198 AVDFRNRYRNVDVLLIDDIQFLAGKEQTQEEFFHTFNTLHEETKQIVISSDRPPKEIPTL 257 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 L SR + + I+ PD + ++ K + I ++ YI +++ ++ E Sbjct: 258 EDRLRSRFEWGLITDITPPDLETRIAILRKKAKAEGLDIPNEVMLYIANQIDSNIRELEG 317 Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKE 241 + ++ + I LAAE LK+ Sbjct: 318 ALIRVVAYSSLINKDINADLAAEALKD 344 >gi|294085125|ref|YP_003551885.1| ATPase [Candidatus Puniceispirillum marinum IMCC1322] gi|292664700|gb|ADE39801.1| ATPase [Candidatus Puniceispirillum marinum IMCC1322] Length = 510 Score = 118 bits (297), Expect = 7e-25, Method: Composition-based stats. Identities = 37/237 (15%), Positives = 84/237 (35%), Gaps = 26/237 (10%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANI--WSDKSR 89 + + +V E A + + L G G GK+ L + W + + Sbjct: 176 DPRYTFANFVVGKPNELAFAVARRTAESEKVAFNPLFLYGGVGLGKTHLMHAIAWHIREQ 235 Query: 90 STRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFH 128 + + S + + + + +++D+ + D + FH Sbjct: 236 APSRKVMYLSAEKFMYRFVRALRFRDTMSFKEQFRSVDVLMIDDVQFISGKDSTQEEFFH 295 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++ + ++++A P L SRL V I D + ++ Sbjct: 296 TFNALVEDGRQVIISADKSPTDLEGMEERLRSRLGWGMVADIHPADYELRLGILQAKAER 355 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 QI I K+ ++ ++ ++ E ++++ A+ G IT AA++L + + Sbjct: 356 AQIQIPDKVLEFLAHKIVSNVRELEGALNRIMAHAMLVGREITIESAADLLADLLRA 412 >gi|193213721|ref|YP_001994920.1| chromosomal replication initiation protein [Chloroherpeton thalassium ATCC 35110] gi|193087198|gb|ACF12473.1| chromosomal replication initiator protein DnaA [Chloroherpeton thalassium ATCC 35110] Length = 496 Score = 118 bits (297), Expect = 7e-25, Method: Composition-based stats. Identities = 36/238 (15%), Positives = 84/238 (35%), Gaps = 29/238 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV----VILVGPSGSGKSCLANIWSDKSRS 90 ++ + + A S P + +++ G G GK+ L + +R Sbjct: 158 NPKYRFENFVKGDCNDLAHAAAKSVSETPGKSSFNPLVIYGGVGLGKTHLIQAIGNHARE 217 Query: 91 T--------------------RFSNIAKSLDSILIDTRKPVLLEDI---DLLDFNDTQLF 127 N S ++++DI + + ++F Sbjct: 218 NNKAKFVMYVSSEKFTIEFVNAIQNNQAHEFSAFYRNVDLLIIDDIQFFERKEKTQEEIF 277 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 HI N++HQ + +++++ L SR + + LPD + ++ + Sbjct: 278 HIFNTLHQANKQIVLSSDRPIKELKGIEERLLSRFQWGLTADLQLPDYETRRAILQRKLE 337 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEK-LVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 + +D+ + +I M ++ E LV + +L+ I LA +L+++ + Sbjct: 338 ENSATLDESIIDFIATNMTSNIRELEGCLVKLLATASLNAKS-IDLPLAKNILRDSVR 394 >gi|157273531|gb|ABV27430.1| chromosomal replication initiator protein DnaA [Candidatus Chloracidobacterium thermophilum] Length = 492 Score = 118 bits (297), Expect = 7e-25, Method: Composition-based stats. Identities = 36/242 (14%), Positives = 89/242 (36%), Gaps = 26/242 (10%) Query: 29 FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW- 84 P + + +V S + A + PSR + + G G GK+ L + Sbjct: 155 PLELPLNPRYTFETFVVGSCNQFARAAAMAVADAPSRTYNPLFIYGGVGLGKTHLMHAIG 214 Query: 85 -----SDKSRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDFND-- 123 D+ + + K ++ ++ + +L++DI + + Sbjct: 215 HAIRNRDRHMRLVYISSEKFMNELINAIRYDKAQAFREKYRSIDVLLIDDIQFIAGKERT 274 Query: 124 -TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 + FH N+++ +++++ P L SR + + + PD + ++ Sbjct: 275 QEEFFHTFNALYDAQKQIVISSDCPPREIPTLEERLHSRFEWGLIADLQPPDLETKVAIL 334 Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + +I + +A +I +++ ++ E + ++ A + I L EVL Sbjct: 335 KRKADLEKIDLSDNVALFIAGKIKSNIRELEGSLIRLIAYASLKQRPIDIELCKEVLNIE 394 Query: 243 QQ 244 ++ Sbjct: 395 EE 396 >gi|47525234|ref|YP_016331.1| chromosomal replication initiation protein [Geobacter sulfurreducens PCA] gi|61212658|sp|Q74GG6|DNAA_GEOSL RecName: Full=Chromosomal replication initiator protein DnaA gi|41152665|gb|AAR99581.1| chromosomal replication initiator protein DnaA [Geobacter sulfurreducens PCA] gi|298504141|gb|ADI82864.1| chromosomal replication initiator protein DnaA [Geobacter sulfurreducens KN400] Length = 445 Score = 118 bits (297), Expect = 7e-25, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 88/233 (37%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKS--- 88 + D + + + A S + P+ + + G G GK+ L N + Sbjct: 111 NPKYTFDTFVCGGSNQFAHAAAQSVANSPAGKYNPLFIYGGVGLGKTHLLNAIGNHVLSV 170 Query: 89 --RSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLLDFND---TQLFH 128 ++ ++ + LI+ +L++DI + + + FH Sbjct: 171 NRKARICFYTSEKFMNELINCLRYQKMDQFRNKFRKMDILLIDDIQFIAGKERTQEEFFH 230 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 NS+++ +++T+ FP L SR + + I PD + ++ K Sbjct: 231 TFNSLYESHKQIVVTSDKFPKDIPGLEERLRSRFEWGLIADIQAPDTETKVAILRKKADA 290 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 I + +A ++ ++ E ++ ++ ++ G IT +A EVLK+ Sbjct: 291 DHISLPDDVALFLASSSTTNVRELEGMLIRLGAVSSLTGKNITLDMAREVLKD 343 >gi|302035395|ref|YP_003795717.1| chromosomal replication initiator protein DnaA [Candidatus Nitrospira defluvii] gi|300603459|emb|CBK39789.1| Chromosomal replication initiator protein DnaA [Candidatus Nitrospira defluvii] Length = 446 Score = 118 bits (297), Expect = 7e-25, Method: Composition-based stats. Identities = 36/233 (15%), Positives = 91/233 (39%), Gaps = 25/233 (10%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW----SDK 87 + +V + + A + P++ + L G G GK+ L N +++ Sbjct: 112 NPKYTFKSFVVGAGNQFAHAACMAVAEQPAKAYNPLFLYGGVGLGKTHLLNAIGNYLAER 171 Query: 88 SRSTRFSNIAKSLDSILIDTRKP---------------VLLEDIDLLDFND---TQLFHI 129 S + + +I++ + ++++DI L + + FH Sbjct: 172 SDLRIAYLTTEQFTNEVINSIRYDKMIDLRKRYRNVDMLMIDDIQFLAGKERTQEEFFHT 231 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N++++ +++++ FP L SR + + + PD + ++ K D Sbjct: 232 FNTLYEAHKQIVLSSDRFPKDMPDIEERLRSRFEWGLIADLQPPDVETRIAILRKKSEDE 291 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +I + + + ++ M+ ++ E + ++ + G IT +A VL++ Sbjct: 292 RIALPEDVIHFLATTMKNNIRELEGSLVRVGAYSSLTGQTITLDMAKNVLRDL 344 >gi|167957122|ref|ZP_02544196.1| chromosomal replication initiation protein [candidate division TM7 single-cell isolate TM7c] Length = 467 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 40/221 (18%), Positives = 89/221 (40%), Gaps = 27/221 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86 + D+ +V S+ + A + S P + L G G GK+ L I + Sbjct: 134 NPRYTFDNFIVGSSNDLAYATCQAVASHPGEKYNPLFLYGGVGLGKTHLMQATGNEIIKN 193 Query: 87 KSRSTRF-----SNIAKSLDSILIDTRK---------PVLLEDIDLLDFND---TQLFHI 129 ++ + I LD I + ++++D+ + + + FH Sbjct: 194 NPQAQILYTTTENFIKDFLDHIRFKKQGFSSKYRNVDVLIVDDMQFIAGKEKTQEEFFHT 253 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N +HQ + +++++ P S L SR + + I +PD + ++ + Sbjct: 254 FNELHQNNKQIIISSDKPPKSIPTLTDRLRSRFEWGMTIDIQMPDFETRCAIVEAKASLS 313 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 + + ++ A Y+ Q ++ ++ E ++++ LAL+ GI Sbjct: 314 GVELSRETAEYLAQNIKTNIRELEGSLNQL--LALAEMRGI 352 >gi|237806777|ref|YP_002891217.1| chromosomal replication initiator protein DnaA [Tolumonas auensis DSM 9187] gi|259645264|sp|C4L755|DNAA_TOLAT RecName: Full=Chromosomal replication initiator protein DnaA gi|237499038|gb|ACQ91631.1| chromosomal replication initiator protein DnaA [Tolumonas auensis DSM 9187] Length = 461 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 86/234 (36%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91 + ++ + + + A+ + P + L G +G GK+ L + + R+ Sbjct: 127 NETYTFENFVEGKSNQLALAAAHQVAENPGGAYNPLFLYGGTGLGKTHLLHAVGNGIRAR 186 Query: 92 --------------------RFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLFH 128 N A + +L++DI + + FH Sbjct: 187 KPNAKVIYMQSERFVQDMVKALQNNAIQEFQRYYRSVDALLIDDIQFFAKKERSQEEFFH 246 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++ + + +++T+ +P L SR + I P+ + ++++ + Sbjct: 247 TFNALLEGNQQIILTSDRYPKEIDGVEDRLKSRFGWGLTIAIEPPELETRVAILMRKAEE 306 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +I + ++A +I +R+ ++ E ++++ A G I E L++ Sbjct: 307 NKIHLPHEVAFFIAKRLRSNVRELEGALNRVIANARFTGKPINIDFVREALRDM 360 >gi|251791868|ref|YP_003006588.1| chromosomal replication initiation protein [Aggregatibacter aphrophilus NJ8700] gi|247533255|gb|ACS96501.1| chromosomal replication initiator protein DnaA [Aggregatibacter aphrophilus NJ8700] Length = 453 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 37/235 (15%), Positives = 87/235 (37%), Gaps = 27/235 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLAN-----IWS 85 + D+ + + + A + P + L G +G GK+ L + I + Sbjct: 118 NTKLIFDNFVEGKSNQLARAVAQKVADNPGEQTANPLFLYGGTGLGKTHLLHAIGNGIIA 177 Query: 86 DKSRSTRFSNIAKSLDSILI---------------DTRKPVLLEDIDLLDFND---TQLF 127 + + ++ ++ + +L++DI + + F Sbjct: 178 NNPDARVVYIHSERFVQQVVTYIRDNKMEEFKKFYRSLDALLVDDIQFFSDKEKTQEEFF 237 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 HI N++ + +++T+ +P L SR I PD + +++K Sbjct: 238 HIFNTLFERGRQIILTSDRYPREIEKIEERLKSRFGWGLTTAIEPPDLETRVAILMKKAD 297 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + +A +I Q++ ++ E ++++ + +G IT E LK+ Sbjct: 298 ENNIELPHDVAFFIGQKLRTNVRELEGALNRVKAMQEFKGEPITIDFVRETLKDM 352 >gi|153815423|ref|ZP_01968091.1| hypothetical protein RUMTOR_01658 [Ruminococcus torques ATCC 27756] gi|317500885|ref|ZP_07959097.1| chromosomal replication initiator protein dnaA [Lachnospiraceae bacterium 8_1_57FAA] gi|331089213|ref|ZP_08338115.1| chromosomal replication initiator protein DnaA [Lachnospiraceae bacterium 3_1_46FAA] gi|145847282|gb|EDK24200.1| hypothetical protein RUMTOR_01658 [Ruminococcus torques ATCC 27756] gi|316897765|gb|EFV19824.1| chromosomal replication initiator protein dnaA [Lachnospiraceae bacterium 8_1_57FAA] gi|330405765|gb|EGG85294.1| chromosomal replication initiator protein DnaA [Lachnospiraceae bacterium 3_1_46FAA] Length = 456 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 44/247 (17%), Positives = 86/247 (34%), Gaps = 35/247 (14%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLAN-----IWSD 86 + D +V S A + P + + G G GK+ L + I ++ Sbjct: 111 NPKYTFDTFVVGSNNNFAHAASLAVAESPGEIYNPLFIYGGVGLGKTHLMHSVAHFILAN 170 Query: 87 KSRSTRFSNIAKSLDSILIDTRKP---------------------VLLEDIDLLDFND-- 123 +++ + LID K +L++DI + + Sbjct: 171 DPSKKVLYVTSETFTNELIDALKAGKTGSELAMTKFREKYRNNDVLLIDDIQFIIGKEST 230 Query: 124 -TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 + FH N +H +++++ P L +R + + IS PD + ++ Sbjct: 231 QEEFFHTFNHLHVSGKQIIISSDKPPKDIETLEARLRTRFEWGLIADISSPDYETRMAIL 290 Query: 183 VKMFADRQI---FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 K + I + YI ++ ++ E ++K+ L+ I LAAE L Sbjct: 291 RKKEELDGLEKYHIPDDVMQYIANNIKSNIRELEGSLNKLIALSNLENKKIDIPLAAEAL 350 Query: 240 KETQQCD 246 K+ D Sbjct: 351 KDMISPD 357 >gi|332980606|ref|YP_004462047.1| chromosomal replication initiator protein DnaA [Mahella australiensis 50-1 BON] gi|332698284|gb|AEE95225.1| chromosomal replication initiator protein DnaA [Mahella australiensis 50-1 BON] Length = 460 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 42/261 (16%), Positives = 100/261 (38%), Gaps = 27/261 (10%) Query: 13 PDKQKNDQPKNKEEQ-LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VI 68 P K D PK++ + + + D ++ ++ A + P + + Sbjct: 101 PADNKQDTPKDEALSAISQNDTLNPKYTFDTFVIGNSNRFAHAASLAVAEAPGKAYNPLF 160 Query: 69 LVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTRKPV 111 + G G GK+ L + S+K + ++I + + + + + Sbjct: 161 IYGGVGLGKTHLMHAIGHRILENNPGIRLMYVTSEKFTNELINSIKDDRNEVFRNKYRNI 220 Query: 112 ---LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 L++DI + + + FH N++++ + +++++ P L SR + Sbjct: 221 DVLLIDDIQFIANKERTQEEFFHTFNTLYETNHQIIISSDRPPKDIPTLEDRLRSRFEWG 280 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 + I PD + ++ K I + + +I Q+++ ++ E + K+ A Sbjct: 281 LLADIQPPDLETRIAILRKKADMENIKVADDILLFIAQQIQSNIRELEGALVKIMAYASL 340 Query: 226 RGMGITRSLAAEVLKETQQCD 246 I +A +VLK+ + D Sbjct: 341 NERNIDIDVAGDVLKDIIKDD 361 >gi|206900692|ref|YP_002251513.1| chromosomal replication initiator protein DnaA [Dictyoglomus thermophilum H-6-12] gi|206739795|gb|ACI18853.1| chromosomal replication initiator protein DnaA [Dictyoglomus thermophilum H-6-12] Length = 441 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 40/238 (16%), Positives = 86/238 (36%), Gaps = 28/238 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSR-- 89 + D +V + A + P + +++ G G GK+ L + + Sbjct: 104 NPKYTFDTFVVGDSNRFAHAAALAVSQNPGKAYNPLLIYGGVGLGKTHLIHAIGHSIQEK 163 Query: 90 ---STRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 + + LID K +L++DI L + + F+ Sbjct: 164 YPKARVVYASMEKFTVELIDAIKEDGMTKFRNRYRNIDVLLIDDIQFLAGKERTQEEFFY 223 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++++ +++T+ P L SR + + I PD + ++ K Sbjct: 224 TFNALYEAGKQIVLTSDRVPKEIPTLEDRLRSRFEWGLIADIQPPDLETRIAILKKKAEA 283 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAE-KLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 + + ++ +I +++ ++ E L+ + +L M I LA VLK+ Q Sbjct: 284 EKAKVPDEVIEFIASQIQSNIRELEGALIRTIAFASL-NNMPINLELAKTVLKDIIQP 340 >gi|189501471|ref|YP_001957188.1| chromosomal replication initiation protein [Candidatus Amoebophilus asiaticus 5a2] gi|189496912|gb|ACE05459.1| chromosomal replication initiator protein DnaA [Candidatus Amoebophilus asiaticus 5a2] Length = 477 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 39/237 (16%), Positives = 80/237 (33%), Gaps = 27/237 (11%) Query: 35 CLGISRDDLLVHSAIEQAV----RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS 90 + + + + A + + ++L G G GK+ + ++ ++ Sbjct: 136 NPNYTFETFIEGDCNQLARSAAQAVAKKPGNNAFNPLMLYGKVGLGKTHIVQALGNEVKA 195 Query: 91 T-----RFSNIAKSLDSILIDT---------------RKPVLLEDIDLLDFNDTQ---LF 127 ++ + I++ ++L+D+ L + F Sbjct: 196 HFSNKFVLYASSEQFTTQFIESLRNNSVQDFTHFYLQADVLILDDVQFLVGKEKTQEIFF 255 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 HI N +HQ ++MT+ P L SR K + PD + +I Sbjct: 256 HIFNHLHQSGKQIVMTSDCPPRDLKGLQERLLSRFKWGLTADLQQPDFETRIAIIKNKIQ 315 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 I I + L YI Q ++ ++ E ++ + A + LA +VLK Sbjct: 316 ADGIDIGEDLVEYIAQSVDTNIRELEGVIISLIAHASLNKRDVDLGLAKQVLKNIVH 372 >gi|196249894|ref|ZP_03148590.1| chromosomal replication initiator protein DnaA [Geobacillus sp. G11MC16] gi|196210770|gb|EDY05533.1| chromosomal replication initiator protein DnaA [Geobacillus sp. G11MC16] Length = 351 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 43/240 (17%), Positives = 89/240 (37%), Gaps = 29/240 (12%) Query: 31 SFP---RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW 84 FP + D ++ S A + P++ + + G G GK+ L + Sbjct: 19 DFPQSMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAI 78 Query: 85 -----------------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND- 123 S+K + + I + + + V L++DI L + Sbjct: 79 GHYVIEHNPSAKVVYLSSEKFTNEFINAIRDNRPDDFRNKYRNVDVLLIDDIQFLAGKEQ 138 Query: 124 --TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 + FH N++H+ +++++ P L SR + + I+ PD + + Sbjct: 139 TQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAI 198 Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + K I ++ YI +++ ++ E + ++ + IT LAAE LK+ Sbjct: 199 LRKKAKAEGFDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKEITADLAAEALKD 258 >gi|254478926|ref|ZP_05092288.1| chromosomal replication initiator protein DnaA [Carboxydibrachium pacificum DSM 12653] gi|214035148|gb|EEB75860.1| chromosomal replication initiator protein DnaA [Carboxydibrachium pacificum DSM 12653] Length = 462 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 34/233 (14%), Positives = 89/233 (38%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD----- 86 + D +V ++ + A + P++ + + G G GK+ L + Sbjct: 128 NPKYTFDTFVVGNSNKLAHAACLAVAQSPAKAYNPLFIYGGVGLGKTHLMHAIGHFINKN 187 Query: 87 KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 + +++ + L+++ K +L++DI + + + FH Sbjct: 188 HAGYKIMYVTSETFTNELVNSIKDDKNEEFRNKYRNIDVLLIDDIQFIANKERTQEEFFH 247 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++++ + +++++ P L SR + + I PD + ++ K Sbjct: 248 TFNTLYEANKQIVISSDRPPKEIPTLEERLRSRFEWGLIADIQPPDYETRVAILKKKAQS 307 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I ++ AY+ ++++ ++ E + ++ A I L LK+ Sbjct: 308 ENLNIPDEVLAYVAEKIQSNIRELEGALIRIVAFATLTKSNIDLELTKHALKD 360 >gi|20806543|ref|NP_621714.1| chromosomal replication initiation protein [Thermoanaerobacter tengcongensis MB4] gi|38257678|sp|Q8RDL6|DNAA_THETN RecName: Full=Chromosomal replication initiator protein DnaA gi|20514980|gb|AAM23318.1| ATPase involved in DNA replication initiation [Thermoanaerobacter tengcongensis MB4] Length = 443 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 34/233 (14%), Positives = 89/233 (38%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD----- 86 + D +V ++ + A + P++ + + G G GK+ L + Sbjct: 109 NPKYTFDTFVVGNSNKLAHAACLAVAQSPAKAYNPLFIYGGVGLGKTHLMHAIGHFINKN 168 Query: 87 KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 + +++ + L+++ K +L++DI + + + FH Sbjct: 169 HAGYKIMYVTSETFTNELVNSIKDDKNEEFRNKYRNIDVLLIDDIQFIANKERTQEEFFH 228 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++++ + +++++ P L SR + + I PD + ++ K Sbjct: 229 TFNTLYEANKQIVISSDRPPKEIPTLEERLRSRFEWGLIADIQPPDYETRVAILKKKAQS 288 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I ++ AY+ ++++ ++ E + ++ A I L LK+ Sbjct: 289 ENLNIPDEVLAYVAEKIQSNIRELEGALIRIVAFATLTKSNIDLELTKHALKD 341 >gi|154684519|ref|YP_001419680.1| chromosomal replication initiation protein [Bacillus amyloliquefaciens FZB42] gi|166201860|sp|A7Z0C3|DNAA_BACA2 RecName: Full=Chromosomal replication initiator protein DnaA gi|154350370|gb|ABS72449.1| DnaA [Bacillus amyloliquefaciens FZB42] Length = 446 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 45/267 (16%), Positives = 96/267 (35%), Gaps = 35/267 (13%) Query: 10 FFVPDKQKNDQPKNKEE------QLFFSFP---RCLGISRDDLLVHSAIEQAVRLIDSWP 60 F +P Q + K + + FP + D ++ S A + Sbjct: 78 FVIPQNQDEENFLPKPQVKKAAKEEPSDFPQSMLNPKYTFDTFVIGSGNRFAHAASLAVA 137 Query: 61 SWPSRV---VILVGPSGSGKSCLANIW------SDKSRSTRFSNIAKSLDSILIDTR--- 108 P++ + + G G GK+ L + + S + + K + + R Sbjct: 138 EAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIDHNPSAKVVYLSSEKFTNEFINSIRDNK 197 Query: 109 -----------KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 +L++DI L + + FH N++H+ +++++ P Sbjct: 198 AVDFRNRYRNVDVLLIDDIQFLAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTL 257 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 L SR + + I+ PD + ++ K + I ++ YI +++ ++ E Sbjct: 258 EDRLRSRFEWGLITDITPPDLETRIAILRKKAKAEGLDIPNEVMLYIANQIDSNIRELEG 317 Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKE 241 + ++ + I LAAE LK+ Sbjct: 318 ALIRVVAYSSLINKDINADLAAEALKD 344 >gi|126697567|ref|YP_001086464.1| chromosomal replication initiator protein [Clostridium difficile 630] gi|254977343|ref|ZP_05273815.1| chromosomal replication initiator protein [Clostridium difficile QCD-66c26] gi|255094673|ref|ZP_05324151.1| chromosomal replication initiator protein [Clostridium difficile CIP 107932] gi|255102900|ref|ZP_05331877.1| chromosomal replication initiator protein [Clostridium difficile QCD-63q42] gi|255308720|ref|ZP_05352891.1| chromosomal replication initiator protein [Clostridium difficile ATCC 43255] gi|255316427|ref|ZP_05358010.1| chromosomal replication initiator protein [Clostridium difficile QCD-76w55] gi|255519087|ref|ZP_05386763.1| chromosomal replication initiator protein [Clostridium difficile QCD-97b34] gi|255652270|ref|ZP_05399172.1| chromosomal replication initiator protein [Clostridium difficile QCD-37x79] gi|255657639|ref|ZP_05403048.1| chromosomal replication initiator protein [Clostridium difficile QCD-23m63] gi|260681770|ref|YP_003213055.1| chromosomal replication initiator protein [Clostridium difficile CD196] gi|296452680|ref|ZP_06894371.1| DNA-directed DNA replication initiator protein [Clostridium difficile NAP08] gi|296880067|ref|ZP_06904036.1| DNA-directed DNA replication initiator protein [Clostridium difficile NAP07] gi|306521985|ref|ZP_07408332.1| chromosomal replication initiator protein [Clostridium difficile QCD-32g58] gi|115249004|emb|CAJ66815.1| Chromosomal replication initiator protein [Clostridium difficile] gi|260207933|emb|CBA60042.1| chromosomal replication initiator protein [Clostridium difficile CD196] gi|296258462|gb|EFH05366.1| DNA-directed DNA replication initiator protein [Clostridium difficile NAP08] gi|296428934|gb|EFH14812.1| DNA-directed DNA replication initiator protein [Clostridium difficile NAP07] Length = 439 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 91/233 (39%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW------- 84 + D ++ ++ A + P++ + L G G GK+ L + Sbjct: 104 NPKYTFDTFVIGNSNRFAHAACVAVAESPAKAYNPLFLYGGVGLGKTHLMHAIGHHIVSQ 163 Query: 85 ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128 S+K + ++I + + + V L++DI + + + FH Sbjct: 164 KKDSKVVYVSSEKFTNELINSIKDDKNEEFRNKYRNVDVLLIDDIQFIAGKERTQEEFFH 223 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H+ + +++++ P L SR + + I PD + ++ K Sbjct: 224 TFNTLHEANKQIIISSDRPPKDIPTLEDRLRSRFEMGLITDIQAPDFETRIAILRKKAQL 283 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 +I + ++ +YI + ++ ++ E + ++ + I+ LA E LK+ Sbjct: 284 ERIDVPNEVMSYIAKNIKSNIRELEGALTRVVAYSSLSNRVISFDLATEALKD 336 >gi|89101119|ref|ZP_01173955.1| chromosomal replication initiation protein [Bacillus sp. NRRL B-14911] gi|89084174|gb|EAR63339.1| chromosomal replication initiation protein [Bacillus sp. NRRL B-14911] Length = 425 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 44/254 (17%), Positives = 98/254 (38%), Gaps = 32/254 (12%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILV 70 K+ +DQP+ L + + D ++ S A + P++ + + Sbjct: 75 GKKDDDQPE-----LPLNM-LNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIY 128 Query: 71 GPSGSGKSCLANIW----SDKSRSTRFSNIAKS----------LDSILIDTRK------P 110 G G GK+ L + D + + + ++ D+ +D R Sbjct: 129 GGVGLGKTHLMHAIGHYVQDHNPAAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDV 188 Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 +L++DI L + + FH N++H+ +++++ P L SR + + Sbjct: 189 LLIDDIQFLAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLI 248 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 I+ PD + ++ K + I ++ YI +++ ++ E + ++ + Sbjct: 249 TDITPPDLETRIAILRKKAKAEGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLIN 308 Query: 228 MGITRSLAAEVLKE 241 I LAAE L++ Sbjct: 309 KDINADLAAEALRD 322 >gi|295135425|ref|YP_003586101.1| chromosomal replication initiator protein DnaA [Zunongwangia profunda SM-A87] gi|294983440|gb|ADF53905.1| chromosomal replication initiator protein DnaA [Zunongwangia profunda SM-A87] Length = 475 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 41/260 (15%), Positives = 91/260 (35%), Gaps = 37/260 (14%) Query: 10 FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66 F +P + E QL + ++ L + A + + P Sbjct: 125 FVIPGIRNV----KIESQL------NPSYNFENFLEGESNRLARSAGLAVANKPGGTSFN 174 Query: 67 -VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTR 108 +++ G G GK+ LA+ ++K ++ K+ + I Sbjct: 175 PLLIFGGVGLGKTHLAHAIGVEIKDKYPEKTVLYISAEKFTQQYIESVKKNNRNDFIHFY 234 Query: 109 ---KPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 ++++DI LL FHI N +HQ +++T+ PV L SR Sbjct: 235 QIIDVLIVDDIQLLSGKAGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSRF 294 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 K ++ PD + +I + + +++ ++ ++ ++ E + + Sbjct: 295 KWGLSAELQHPDFETRVSIIKNKLYRDGVEMPEEIVEFLANNIKANIRELEGAIISLIAH 354 Query: 223 ALSRGMGITRSLAAEVLKET 242 + +T LA +++ Sbjct: 355 SSFNKKDVTLELAKKIVDNY 374 >gi|238898807|ref|YP_002924489.1| DNA replication initiator protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466567|gb|ACQ68341.1| DNA replication initiator protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 454 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 93/229 (40%), Gaps = 26/229 (11%) Query: 40 RDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLAN-----IWSDKSRS- 90 D + + + A + P + L G +G GK+ L + I + K+++ Sbjct: 125 FDTFVEGKSNQLARAAAIQVSGNPGAAYNPLFLYGDTGLGKTHLLHAVGNGIIAHKTKAK 184 Query: 91 -------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLFHIINSI 133 ++ K+L + I+ + +L++DI + + FH N++ Sbjct: 185 VVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNAL 244 Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193 + + +++T+ +P L SR V I+ P+ + +++K + I + Sbjct: 245 LEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIAPPELETRVAILMKKADENNIRL 304 Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++A +I +R+ ++ E ++++ A G IT + L++ Sbjct: 305 PGEVAFFIAKRLRSNVRELEGALNRVMANANFTGKAITIDFVRDALRDL 353 >gi|158834335|gb|ABW81967.1| transcriptional dual regulator [Candidatus Hamiltonella defensa] Length = 306 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 94/229 (41%), Gaps = 26/229 (11%) Query: 40 RDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLAN-----IWSDKSRS- 90 D + + + A + P + L G +G GK+ L + I + K+++ Sbjct: 51 FDTFVEGKSNQLARAAAIQVSGNPGAAYNPLFLYGDTGLGKTHLLHAVGNGIIAHKTKAK 110 Query: 91 -------TRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLFHIINSI 133 ++ K+L + I+ + +L++DI + + FH +N++ Sbjct: 111 VVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTLNAL 170 Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193 + + +++T+ +P L SR V I+ P+ + +++K + I + Sbjct: 171 LEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIAPPELETRVAILMKKADENNIRL 230 Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++A +I +R+ ++ E ++++ A G IT + L++ Sbjct: 231 PGEVAFFIAKRLRSNVRELEGALNRVMANANFTGKAITIDFVRDALRDL 279 >gi|329957669|ref|ZP_08298144.1| replication initiator protein DnaA [Bacteroides clarus YIT 12056] gi|328522546|gb|EGF49655.1| replication initiator protein DnaA [Bacteroides clarus YIT 12056] Length = 464 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 46/267 (17%), Positives = 94/267 (35%), Gaps = 35/267 (13%) Query: 11 FVPDKQKNDQPKNKEEQLF---FSFPR-CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV 66 +P KQ D+ Q+ P + D + + + + + ++ P++ Sbjct: 103 IIPQKQTIDKAIP---QIPVPDLD-PHLNPEYNFDTFIEGYSNKLSRSVAEAVALNPAKT 158 Query: 67 ----VILVGPSGSGKSCLANIWSDK-------SRSTRFSNIA---KSLDSILIDTRKPVL 112 + L G SG GK+ LAN K R S + DS+ +T + Sbjct: 159 IFNPLFLYGASGVGKTHLANAIGTKIKELYPEKRVLYVSAHLFQVQYTDSVRNNTTNDFI 218 Query: 113 -------------LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC 159 +++ + FHI N +HQ L++T+ PV L Sbjct: 219 NFYQTIDILIIDDIQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVLLQGMEERLI 278 Query: 160 SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 +R K V ++ P + + ++ + ++ YI + + S+ E +V + Sbjct: 279 TRFKWGMVAELEKPTVELRKNILRNKIHRDGLQFPPEVIDYIAENVGNSVRDLEGIVISI 338 Query: 220 DNLALSRGMGITRSLAAEVLKETQQCD 246 + I LA ++++ + Sbjct: 339 MAHSTIYNKEIDLELAQRIVRKVVNSE 365 >gi|325953648|ref|YP_004237308.1| Chromosomal replication initiator protein dnaA [Weeksella virosa DSM 16922] gi|323436266|gb|ADX66730.1| Chromosomal replication initiator protein dnaA [Weeksella virosa DSM 16922] Length = 475 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 37/235 (15%), Positives = 77/235 (32%), Gaps = 27/235 (11%) Query: 37 GISRDDLLVHSAIEQAV----RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTR 92 + D+ + + A + + G G GK+ L + + + Sbjct: 142 RYNFDNFIEGESNRLARTAGKAIAKRPGGTSFNPFFIYGGVGLGKTHLVHAIGQEIKELY 201 Query: 93 -----------------FSNIAKSLDSILIDTR---KPVLLEDIDLLDF---NDTQLFHI 129 + +A + + ++++DI L FHI Sbjct: 202 PDKSVLYVSTEKFTMQFINAVANKSQNDFVHFYQMIDVLIIDDIQFLAGKAKTQEAFFHI 261 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N + Q +++T+ P + P L SR K ++ +PD +I + Sbjct: 262 FNDLQQKGKQIILTSDKSPATLTEMEPRLISRFKWGLNAELQMPDASTRRNIIQQKVEKD 321 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 I I + + YI + +E ++ E ++ + + IT L + L Q Sbjct: 322 GIEIPETVLDYIAENVETNVRELEGTLNSIIAQSTFNRKEITLDLVKDTLSNIIQ 376 >gi|217966450|ref|YP_002351956.1| chromosomal replication initiator protein DnaA [Dictyoglomus turgidum DSM 6724] gi|217335549|gb|ACK41342.1| chromosomal replication initiator protein DnaA [Dictyoglomus turgidum DSM 6724] Length = 443 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 40/238 (16%), Positives = 86/238 (36%), Gaps = 28/238 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSR-- 89 + D +V + A + P + +++ G G GK+ L + + Sbjct: 104 NPKYTFDTFVVGDSNRFAHAAALAVSQNPGKAYNPLLIYGGVGLGKTHLIHAIGHSIQEK 163 Query: 90 ---STRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 + + LID K +L++DI L + + F+ Sbjct: 164 YPKARVVYASMEKFTVELIDAIKEDGMTKFRNRYRNIDVLLIDDIQFLAGKERTQEEFFY 223 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++++ +++T+ P L SR + + I PD + ++ K Sbjct: 224 TFNALYEAGKQIVLTSDRVPKEIPTLEDRLRSRFEWGLIADIQPPDLETRIAILKKKAEA 283 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAE-KLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 + + ++ +I +++ ++ E L+ + +L M I LA VLK+ Q Sbjct: 284 EKAKVPDEVIEFIASQIQSNIRELEGALIRTIAFASL-NNMPINLELAKTVLKDIIQP 340 >gi|86132708|ref|ZP_01051300.1| chromosomal replication initiator protein DnaA [Dokdonia donghaensis MED134] gi|85816662|gb|EAQ37848.1| chromosomal replication initiator protein DnaA [Dokdonia donghaensis MED134] Length = 475 Score = 118 bits (296), Expect = 9e-25, Method: Composition-based stats. Identities = 41/260 (15%), Positives = 92/260 (35%), Gaps = 37/260 (14%) Query: 10 FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66 F +P + E QL + ++ L + A + + P Sbjct: 125 FVIPGIRNLQI----ESQL------NPNYNFENFLEGDSNRLARSAGMAVANKPGGTSFN 174 Query: 67 -VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTR 108 +++ G G GK+ LA+ ++K ++ K+ + I Sbjct: 175 PLLIFGGVGLGKTHLAHAIGVQIKDKYPAKTVLYISAEKFTQQYIESVKKNNRNDFIHFY 234 Query: 109 KPV---LLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 + + +++DI LL FHI N +HQ +++T+ PV L SR Sbjct: 235 QVIDVLIVDDIQLLSGKAGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSRF 294 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 K ++ P + +I + + + +++ ++ ++ ++ E + + Sbjct: 295 KWGLSAELQHPSFETRIAIIKQKLYQDGVEMPEEIVEFLANNIKTNVRELEGAIISLIAH 354 Query: 223 ALSRGMGITRSLAAEVLKET 242 + IT LA +++ Sbjct: 355 SSFNKKEITLDLAKKIVDNY 374 >gi|168183727|ref|ZP_02618391.1| chromosomal replication initiator protein DnaA [Clostridium botulinum Bf] gi|237793321|ref|YP_002860873.1| chromosomal replication initiation protein [Clostridium botulinum Ba4 str. 657] gi|259645246|sp|C3KXQ7|DNAA_CLOB6 RecName: Full=Chromosomal replication initiator protein DnaA gi|182673252|gb|EDT85213.1| chromosomal replication initiator protein DnaA [Clostridium botulinum Bf] gi|229261050|gb|ACQ52083.1| chromosomal replication initiator protein DnaA [Clostridium botulinum Ba4 str. 657] Length = 448 Score = 118 bits (296), Expect = 9e-25, Method: Composition-based stats. Identities = 35/233 (15%), Positives = 91/233 (39%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW------- 84 + D ++ ++ A + P++ + + G G GK+ L + Sbjct: 112 NPKYTFDSFVIGNSNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYILHN 171 Query: 85 ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128 S+K + ++I + + + + L++DI + + + FH Sbjct: 172 NPKSQVVYVSSEKFTNELINSIKDDKNVEFRNKYRNIDILLVDDIQFIAGKERTQEEFFH 231 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++++ + +++++ P L SR + + I PD + ++ K Sbjct: 232 TFNALYEANKQIIISSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDFETRMAILKKKADV 291 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++ I ++ YI +++ ++ E + ++ + I+ LA+E LK+ Sbjct: 292 EKLNIPNEVMVYIATKIKSNIRELEGALIRIVAFSSLTNKEISVDLASEALKD 344 >gi|323486749|ref|ZP_08092068.1| chromosomal replication initiator protein dnaA [Clostridium symbiosum WAL-14163] gi|323694891|ref|ZP_08109041.1| chromosomal replication initiator protein dnaA [Clostridium symbiosum WAL-14673] gi|323399888|gb|EGA92267.1| chromosomal replication initiator protein dnaA [Clostridium symbiosum WAL-14163] gi|323500981|gb|EGB16893.1| chromosomal replication initiator protein dnaA [Clostridium symbiosum WAL-14673] Length = 456 Score = 117 bits (295), Expect = 9e-25, Method: Composition-based stats. Identities = 43/241 (17%), Positives = 86/241 (35%), Gaps = 29/241 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLAN-----IWSD 86 + D +V + A + P + + G G GK+ L + I + Sbjct: 117 NPRYTFDSFVVGANNNLAHAASLAVAESPGEIYNPLFIYGGVGLGKTHLMHSIGHFILKN 176 Query: 87 KSRSTRFSNIAKSLDSILIDT------------------RKPVLLEDIDLLDFND---TQ 125 ++ ++ + LID +L++DI + + + Sbjct: 177 NPQAKVLYVTSEKFTNELIDAIRNKNNISTTEFREKYRNNDILLIDDIQFIIGKESTQEE 236 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 FH NS+++ +++++ P L SR + V I PD + ++ K Sbjct: 237 FFHTFNSLYEAKKQIIISSDKPPKEIETLEERLRSRFEWGLTVDIQSPDYETRMAILRKK 296 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 ID ++ YI ++ ++ E + K+ L+ IT LA E LK+ Sbjct: 297 EELEGYNIDNEVIKYIATNVKSNIRELEGALTKIVALSKLNKQEITIELAEEALKDLISP 356 Query: 246 D 246 + Sbjct: 357 N 357 >gi|255532251|ref|YP_003092623.1| chromosomal replication initiator protein DnaA [Pedobacter heparinus DSM 2366] gi|255345235|gb|ACU04561.1| chromosomal replication initiator protein DnaA [Pedobacter heparinus DSM 2366] Length = 476 Score = 117 bits (295), Expect = 9e-25, Method: Composition-based stats. Identities = 41/260 (15%), Positives = 89/260 (34%), Gaps = 39/260 (15%) Query: 10 FFVPD-KQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---- 64 F +P K+ N P QL G + + + A + + P Sbjct: 125 FVIPGLKKMNVDP-----QL------NPGYTFEAYVEGDCNRLARSAGHAVAAKPGATSF 173 Query: 65 RVVILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDT 107 +++ G SG GK+ LA +K ++ + + ++ Sbjct: 174 NPLMIYGSSGLGKTHLAQAIGNEIRRNLPDKLVIYVSCEKFCQQFVESLKNNTINDFVNF 233 Query: 108 RKP---VLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161 + ++++D+ + FHI N +HQ +++T+ P L SR Sbjct: 234 YQAMDVIIMDDVHNFAGKEKTQDIFFHIFNHLHQSGKQIIITSDKAPKDLSGLEERLLSR 293 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 K + +P+ + ++ K I + ++ Y+ ++ ++ E + + Sbjct: 294 FKWGLSADLQVPELETRIAILRKKMYADGIDLPDEVVEYVAHNIDNNVRELEGAMVSLLA 353 Query: 222 LALSRGMGITRSLAAEVLKE 241 + I LA +LK Sbjct: 354 QSTMNRKEIDLQLAKSMLKN 373 >gi|315634815|ref|ZP_07890097.1| ribosomal subunit interface protein [Aggregatibacter segnis ATCC 33393] gi|315476367|gb|EFU67117.1| ribosomal subunit interface protein [Aggregatibacter segnis ATCC 33393] Length = 453 Score = 117 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 35/235 (14%), Positives = 87/235 (37%), Gaps = 27/235 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLAN-----IWS 85 + ++ + + + A + P + L G +G GK+ L + I + Sbjct: 118 NTKLVFENFVEGKSNQLARAVAQKVADNPGEQTANPLFLYGGTGLGKTHLLHAIGNGIIA 177 Query: 86 DKSRSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLLDFND---TQLF 127 + + ++ ++ + +L++DI + + F Sbjct: 178 NNPEARVVYIHSERFVQQVVAYIRDNKMEEFKKFYRSLDALLVDDIQFFSDKEKTQEEFF 237 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 HI N++ + +++T+ +P L SR I PD + +++K Sbjct: 238 HIFNTLFERGRQIILTSDRYPREIEKIEERLKSRFGWGLTTAIEPPDLETRVAILMKKAE 297 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + +A +I Q++ ++ E ++++ + +G IT E LK+ Sbjct: 298 ENNVDLPHDVAFFIGQKLRTNVRELEGALNRVKAMQEFKGEPITIDFVRETLKDM 352 >gi|197302268|ref|ZP_03167327.1| hypothetical protein RUMLAC_00995 [Ruminococcus lactaris ATCC 29176] gi|197298699|gb|EDY33240.1| hypothetical protein RUMLAC_00995 [Ruminococcus lactaris ATCC 29176] Length = 456 Score = 117 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 43/247 (17%), Positives = 85/247 (34%), Gaps = 35/247 (14%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLAN-----IWSD 86 + D +V S A + P + L G G GK+ L + I Sbjct: 111 NPKYTFDTFVVGSNNRFAHAASVAVAESPGESYNPLFLYGGVGLGKTHLMHSVAHYILKH 170 Query: 87 KSRSTRFSNIAKSLDSILIDT---------------------RKPVLLEDIDLLDFND-- 123 +++ + LI+ +L++DI + + Sbjct: 171 DPSKKVLYVTSETFTNELIEALKVGKNGNEMAMTSFREKYRNNDVLLIDDIQFIIGKEST 230 Query: 124 -TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 + FH N++H +++++ P L +R + + IS PD + ++ Sbjct: 231 QEEFFHTFNNLHLAGKQIIISSDKPPKDMETLEARLRTRFEWGMIADISSPDYETRMAIL 290 Query: 183 VKMFADRQI---FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 K + I ++ YI ++ ++ E ++K+ L+ I LAAE L Sbjct: 291 RKKEELDGLEKYHIPDEVMQYIANNIKSNIRELEGSLNKLIALSNLENKPIDIPLAAEAL 350 Query: 240 KETQQCD 246 K+ D Sbjct: 351 KDMISPD 357 >gi|126663416|ref|ZP_01734413.1| chromosomal replication initiator protein [Flavobacteria bacterium BAL38] gi|126624364|gb|EAZ95055.1| chromosomal replication initiator protein [Flavobacteria bacterium BAL38] Length = 475 Score = 117 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 41/259 (15%), Positives = 92/259 (35%), Gaps = 37/259 (14%) Query: 10 FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66 F +P + E QL S D+ L + A + + P Sbjct: 125 FVIPGIRNL----KIESQL------NANYSFDNFLEGDSNRLARSAGMAVANKPGGTSFN 174 Query: 67 -VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTR 108 +++ G G GK+ LA+ ++ ++ K+ + I Sbjct: 175 PLLIFGGVGLGKTHLAHAIGVEIKDKYPEKTVLYISAEIFTQQYIDSVKKNTRNDFIHFY 234 Query: 109 KPV---LLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 + + +++D+ L FHI N +HQ +++T+ PV L SR Sbjct: 235 QLIDVLIIDDVQFLSGKSGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSRF 294 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 K ++ PD + ++ + + I ++ Y+ + ++ ++ E + + Sbjct: 295 KWGLSAELHQPDYETRISILKNILFRDGVEIPDEIVEYVAKNIKSNVRELEGAIISLIAQ 354 Query: 223 ALSRGMGITRSLAAEVLKE 241 + + LA +V+++ Sbjct: 355 SSFNKREVNLELAKQVVEK 373 >gi|332290651|ref|YP_004429260.1| chromosomal replication initiator protein DnaA [Krokinobacter diaphorus 4H-3-7-5] gi|332168737|gb|AEE17992.1| chromosomal replication initiator protein DnaA [Krokinobacter diaphorus 4H-3-7-5] Length = 475 Score = 117 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 42/260 (16%), Positives = 92/260 (35%), Gaps = 37/260 (14%) Query: 10 FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66 F +P + E QL + D+ L + A + + P Sbjct: 125 FVIPGIRNLQI----ESQL------NPNYNFDNFLEGDSNRLARSAGMAVANKPGGTSFN 174 Query: 67 -VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTR 108 +++ G G GK+ LA+ ++K ++ K+ + I Sbjct: 175 PLLVFGGVGLGKTHLAHAIGVQIKDKYPAKTVLYISAEKFTQQYIESVKKNNRNDFIHFY 234 Query: 109 KPV---LLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 + + +++DI LL FHI N +HQ +++T+ PV L SR Sbjct: 235 QVIDVLIVDDIQLLSGKAGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSRF 294 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 K ++ P + +I + + + +++ ++ ++ ++ E + + Sbjct: 295 KWGLSAELQHPSFETRIAIIKQKLYQDGVEMPEEIVEFLANNIKTNVRELEGAIISLIAH 354 Query: 223 ALSRGMGITRSLAAEVLKET 242 + IT LA +++ Sbjct: 355 SSFNKKEITLDLAKKIVDNY 374 >gi|322804279|emb|CBZ01829.1| DnaA DNA replication protein [Clostridium botulinum H04402 065] Length = 445 Score = 117 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 35/233 (15%), Positives = 90/233 (38%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW------- 84 + D ++ ++ A + P+ + + G G GK+ L + Sbjct: 109 NPKYTFDSFVIGNSNRFAHAASLAVAESPAKAYNPLFIYGGVGLGKTHLMHAIGHYILHN 168 Query: 85 ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128 S+K + ++I + + + + L++DI + + + FH Sbjct: 169 NPKSQVVYVSSEKFTNELINSIKDDKNVEFRNKYRNIDILLVDDIQFIAGKERTQEEFFH 228 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++++ + +++++ P L SR + + I PD + ++ K Sbjct: 229 TFNALYEANKQIIISSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDFETRMAILKKKADV 288 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++ I ++ YI +++ ++ E + ++ + I+ LA+E LK+ Sbjct: 289 EKLNIPNEVMVYIATKIKSNIRELEGALIRIVAFSSLTNKEISIDLASEALKD 341 >gi|53802863|ref|YP_115420.1| chromosomal replication initiator protein DnaA [Methylococcus capsulatus str. Bath] gi|61212517|sp|Q602N0|DNAA_METCA RecName: Full=Chromosomal replication initiator protein DnaA gi|53756624|gb|AAU90915.1| chromosomal replication initiator protein DnaA [Methylococcus capsulatus str. Bath] Length = 442 Score = 117 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 41/259 (15%), Positives = 90/259 (34%), Gaps = 32/259 (12%) Query: 14 DKQKNDQPKNKE----EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66 + ++ P K +Q+ + + + + + A R Sbjct: 85 AQMRSANPPRKTAPARKQVPNNLNSAFIFG--NFVEGKSNQLAKAASLQVAQNVGRAYNP 142 Query: 67 VILVGPSGSGKSCLANIWSDK-------------SRSTRFSNIAKSLDSILIDT------ 107 + + G G GK+ L + ++ S++ K+L I+ Sbjct: 143 LFIYGGVGLGKTHLMHAIGNEILRGNPAANIVYLHSERFVSDMVKALQHNAINAFKEFYR 202 Query: 108 -RKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 +L++DI + + FH N++ + +++T +P L SR Sbjct: 203 TVDALLIDDIQFFAGKERSQEEFFHTFNTLLENKHQVVLTCDRYPKEIKGLEERLKSRFG 262 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 V I PD + +++ I + ++A +I +R+ ++ E + ++ A Sbjct: 263 WGLPVAIEPPDLETRVAILMSKAQQSGIDLSPEVAFFIGKRIRSNIRELEGALRRVIANA 322 Query: 224 LSRGMGITRSLAAEVLKET 242 G IT A E L++ Sbjct: 323 QFTGRPITLEFAKEALRDL 341 >gi|148378012|ref|YP_001252553.1| chromosomal replication initiator protein DnaA [Clostridium botulinum A str. ATCC 3502] gi|153930843|ref|YP_001382411.1| chromosomal replication initiation protein [Clostridium botulinum A str. ATCC 19397] gi|153935412|ref|YP_001385963.1| chromosomal replication initiation protein [Clostridium botulinum A str. Hall] gi|166201876|sp|A7FPR6|DNAA_CLOB1 RecName: Full=Chromosomal replication initiator protein DnaA gi|166201877|sp|A5HXP7|DNAA_CLOBH RecName: Full=Chromosomal replication initiator protein DnaA gi|148287496|emb|CAL81555.1| chromosomal replication initiator protein [Clostridium botulinum A str. ATCC 3502] gi|152926887|gb|ABS32387.1| chromosomal replication initiator protein DnaA [Clostridium botulinum A str. ATCC 19397] gi|152931326|gb|ABS36825.1| chromosomal replication initiator protein DnaA [Clostridium botulinum A str. Hall] Length = 448 Score = 117 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 35/233 (15%), Positives = 89/233 (38%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW------- 84 + D ++ ++ A + P+ + + G G GK+ L + Sbjct: 112 NPKYTFDSFVIGNSNRFAHAASLAVAESPAKAYNPLFIYGGVGLGKTHLMHAIGHYILHN 171 Query: 85 ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128 S+K + ++I + + + + L++DI + + + FH Sbjct: 172 NPKSQVVYVSSEKFTNELINSIKDDKNVEFRNKYRNIDILLVDDIQFIAGKERTQEEFFH 231 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++++ + +++++ P L SR + + I PD + ++ K Sbjct: 232 TFNALYEANKQIIISSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDFETRMAILKKKADV 291 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I ++ YI +++ ++ E + ++ + I+ LA+E LK+ Sbjct: 292 ENLNIPNEVMVYIATKIKSNIRELEGALIRIVAFSSLTNKEISIDLASEALKD 344 >gi|284097517|ref|ZP_06385596.1| Chromosomal replication initiator protein dnaA [Candidatus Poribacteria sp. WGA-A3] gi|283830972|gb|EFC35003.1| Chromosomal replication initiator protein dnaA [Candidatus Poribacteria sp. WGA-A3] Length = 451 Score = 117 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 39/257 (15%), Positives = 97/257 (37%), Gaps = 36/257 (14%) Query: 17 KNDQPKNKEEQ------LFFSFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVV 67 + D+P+ +Q L + ++ +V ++ + A + P+ Sbjct: 98 QADKPQAAPQQTRVHRQLP-----NPKYTFENFVVGASNQFAHAASLAVAESPARSYNPF 152 Query: 68 ILVGPSGSGKSCLAN---IWSDKSRSTRFS-NIAKSLDSILIDTRKP------------- 110 + G G GK+ L N + + R + + + +I++ + Sbjct: 153 FIYGGVGLGKTHLLNSIGNFVMQKGDLRIAYVTTEEFTNEVINSIRYDKMSELRRRYRNI 212 Query: 111 --VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 +L++DI L + + FH N++++ +++++ FP L SR + Sbjct: 213 DMLLIDDIQFLAGKERTQEEFFHTFNALYEARKQIVLSSDRFPKEMPSMEERLRSRFEWG 272 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 + + PD + ++ K + I I + + + ++ ++ E + ++ Sbjct: 273 LIADLQQPDVETRIAILKKKSEEEGIAIGDDVIHLLAEGLKSNIRELEGALIRLGAYCTL 332 Query: 226 RGMGITRSLAAEVLKET 242 G IT +A VL++ Sbjct: 333 TGQAITTDMAKTVLRDL 349 >gi|261868623|ref|YP_003256545.1| chromosomal replication initiation protein [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413955|gb|ACX83326.1| chromosomal replication initiator protein DnaA [Aggregatibacter actinomycetemcomitans D11S-1] Length = 453 Score = 117 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 35/235 (14%), Positives = 87/235 (37%), Gaps = 27/235 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLAN-----IWS 85 + ++ + + + A + P + L G +G GK+ L + I + Sbjct: 118 NTKLVFENFVEGKSNQLARAVAQKVADNPGEQTANPLFLYGGTGLGKTHLLHAIGNGIIA 177 Query: 86 DKSRSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLLDFND---TQLF 127 + + ++ ++ + +L++DI + + F Sbjct: 178 NNPNARVVYIHSERFVQQVVAYIRDNKMEEFKKFYRSLDALLVDDIQFFSDKEKTQEEFF 237 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 HI N++ + +++T+ +P L SR I PD + +++K Sbjct: 238 HIFNTLFERGRQIILTSDRYPREIEKIEERLKSRFGWGLTTAIEPPDLETRVAILMKKAE 297 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + +A +I Q++ ++ E ++++ + +G IT E LK+ Sbjct: 298 ENNVDLPHDVAFFIGQKLRTNVRELEGALNRVKAMQEFKGEPITIDFVRETLKDM 352 >gi|313157670|gb|EFR57081.1| chromosomal replication initiator protein DnaA [Alistipes sp. HGB5] Length = 460 Score = 117 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 42/237 (17%), Positives = 79/237 (33%), Gaps = 27/237 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL----IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS 90 G++ + A + + P + + G SG GK+ + + R Sbjct: 124 NPGLTFATFIEGECNRLARSAGMSVAVNPGNNPFNPLYIYGNSGLGKTHIVQAIGHEVRQ 183 Query: 91 TR--FSNIAKSLDSILIDTRKP------------------VLLEDIDLLDF---NDTQLF 127 + S++ + ++++DI L F Sbjct: 184 RHPELQVLYVSMNKFQAQFQTAYKNGEIPDFIHFYQMIDVLIIDDIQELTGKTGTQNAFF 243 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 +I N + L++T+ PV L +R K +++ PD + K+I Sbjct: 244 NIFNHLQLAGKQLILTSDKPPVELKDIEQRLLTRFKWGLSAQLNTPDHETKLKIIRVKAQ 303 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 I + AY+ + ++ E + + A G IT SLA E+LK Q Sbjct: 304 KLGAQISDDVVAYLADNISANVREIEGALSSLVANASFLGRKITTSLAKEILKVYVQ 360 >gi|313202491|ref|YP_004041148.1| chromosomal replication initiator protein dnaa [Paludibacter propionicigenes WB4] gi|312441807|gb|ADQ78163.1| chromosomal replication initiator protein DnaA [Paludibacter propionicigenes WB4] Length = 463 Score = 117 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 44/252 (17%), Positives = 92/252 (36%), Gaps = 33/252 (13%) Query: 20 QPKNKEEQLF-FSFPRCLGISRDDLLVHSAIEQAVRL---IDSWPS-WPSRVVILVGPSG 74 P +K QL + ++L+ ++ + A I + P + + G SG Sbjct: 113 NPYHKP-QLPEIDPQLNPAYNFNNLIEGNSNKLARTAGISIGNEPGKNIFNPLFVYGQSG 171 Query: 75 SGKSCLANI---------------------WSDK-SRSTRFSNIAKSLDSILIDTRKPVL 112 GK+ LAN + + + + R + + L+ T ++ Sbjct: 172 VGKTHLANAIGVMTKQLHPEKRVLYVSANTFQIQYTDAVRSNTVNDFLN--FYQTIDVLI 229 Query: 113 LEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 ++DI FHI N +HQ L++T+ P+ L +R K + Sbjct: 230 VDDIQEFAGKTGTQNTFFHIFNHLHQTGKQLVLTSDRSPIVMVGLEQRLLTRFKWGLSAE 289 Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229 I PD + ++ + I ++ +I + + ++ E ++ + + M Sbjct: 290 IEKPDFELRRSILQSKIYRDGLEISDEVVDFIAEHVVDNVRDLEGVLVSLLAHSTLANMP 349 Query: 230 ITRSLAAEVLKE 241 I +LA +V+ Sbjct: 350 IDVALAEKVISR 361 >gi|188589439|ref|YP_001919466.1| chromosomal replication initiation protein [Clostridium botulinum E3 str. Alaska E43] gi|251779038|ref|ZP_04821958.1| chromosomal replication initiator protein DnaA [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|226735791|sp|B2UX43|DNAA_CLOBA RecName: Full=Chromosomal replication initiator protein DnaA gi|188499720|gb|ACD52856.1| chromosomal replication initiator protein DnaA [Clostridium botulinum E3 str. Alaska E43] gi|243083353|gb|EES49243.1| chromosomal replication initiator protein DnaA [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 456 Score = 117 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 35/233 (15%), Positives = 87/233 (37%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW------- 84 + + ++ ++ A + P++ + + G G GK+ L + Sbjct: 120 NPKYTFNSFVIGNSNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYILQN 179 Query: 85 ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128 S+K + + I + + V L++DI + + + FH Sbjct: 180 NTKAKVVYVSSEKFTNELINAIKDDKNEEFRKKYRNVDVLLIDDIQFIAGKERTQEEFFH 239 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N +H + +++++ P L SR + + I +PD + ++ K Sbjct: 240 TFNELHDANKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQVPDFETRMAILKKKADV 299 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + + ++ YI +++ ++ E + ++ + +T LA+E LK+ Sbjct: 300 ENLKVANEVMGYIATKIKSNIRELEGALIRIIAYSSLTNREVTVDLASEALKD 352 >gi|187935721|ref|YP_001884266.1| chromosomal replication initiation protein [Clostridium botulinum B str. Eklund 17B] gi|226735792|sp|B2THB4|DNAA_CLOBB RecName: Full=Chromosomal replication initiator protein DnaA gi|187723874|gb|ACD25095.1| chromosomal replication initiator protein DnaA [Clostridium botulinum B str. Eklund 17B] Length = 456 Score = 117 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 35/233 (15%), Positives = 87/233 (37%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW------- 84 + + ++ ++ A + P++ + + G G GK+ L + Sbjct: 120 NPKYTFNSFVIGNSNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYILQN 179 Query: 85 ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128 S+K + + I + + V L++DI + + + FH Sbjct: 180 NTKAKVVYVSSEKFTNELINAIKDDKNEEFRKKYRNVDVLLIDDIQFIAGKERTQEEFFH 239 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N +H + +++++ P L SR + + I +PD + ++ K Sbjct: 240 TFNELHDANKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQVPDFETRMAILKKKADV 299 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + + ++ YI +++ ++ E + ++ + +T LA+E LK+ Sbjct: 300 ENLKVANEVMGYIATKIKSNIRELEGALIRIIAYSSLTNREVTVDLASEALKD 352 >gi|164686446|ref|ZP_02210474.1| hypothetical protein CLOBAR_00011 [Clostridium bartlettii DSM 16795] gi|164604457|gb|EDQ97922.1| hypothetical protein CLOBAR_00011 [Clostridium bartlettii DSM 16795] Length = 451 Score = 117 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 89/233 (38%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWS-----D 86 + D ++ ++ A + P++ + L G G GK+ L + + Sbjct: 114 NPKYTFDTFVIGNSNRFAHAACVAVAESPAKAYNPLFLYGGVGLGKTHLMHAIGHSIMKE 173 Query: 87 KSRSTRFSNIAKSLDSILIDTRKP---------------VLLEDIDLLDFND---TQLFH 128 ++ + ++ + LI++ K +L++DI + + + FH Sbjct: 174 QNDAKVVYVSSEKFTNELINSIKSDKNEEFRNKYRNVDILLIDDIQFIAGKEGTQEEFFH 233 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H+ + +++++ P L SR + + I PD + ++ Sbjct: 234 TFNALHEANKQIIISSDRPPKEIPTLEDRLRSRFEMGLIADIQPPDFETRIAILKTKAQI 293 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 I I ++ YI ++ ++ E + ++ + I+ LA E LK+ Sbjct: 294 ENIDIPNEVMNYIATYIKSNIRELEGALTRVVAYSSLINKDISYDLAVEALKD 346 >gi|229542315|ref|ZP_04431375.1| chromosomal replication initiator protein DnaA [Bacillus coagulans 36D1] gi|229326735|gb|EEN92410.1| chromosomal replication initiator protein DnaA [Bacillus coagulans 36D1] Length = 449 Score = 117 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 47/274 (17%), Positives = 101/274 (36%), Gaps = 48/274 (17%) Query: 10 FFVPDKQKNDQPKNKEEQLFFSFPRC----------------LGISRDDLLVHSAIEQAV 53 F +P +Q +D+P+ F P+ + D ++ S A Sbjct: 78 FVIPQQQDSDEPE------LFPSPKKSAEKLNDTRDYQSMLIPKYTFDTFVIGSGNRFAH 131 Query: 54 RLIDSWPSWPSRV---VILVGPSGSGKSCLANIW-----------------SDKSRSTRF 93 + P++ + + G G GK+ L + S+K + Sbjct: 132 AASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVLEHNPKAKVVYLSSEKFTNEFI 191 Query: 94 SNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTF 147 ++I + + + V L++DI L + + FH N++H+ +++++ Sbjct: 192 NSIRDNKGGEFRNKYRNVDILLIDDIQFLAGKESTQEEFFHTFNALHEESKQIVISSDRP 251 Query: 148 PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER 207 P L SR + + I+ PD + ++ K + I ++ YI +++ Sbjct: 252 PKEIPTLEERLRSRFEWGLITDITPPDLETRIAILRKKAKADGLDIPNEVMLYIANQIDT 311 Query: 208 SLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++ E + ++ + I LAAE LK+ Sbjct: 312 NIRELEGALIRVVAYSSLINKDINADLAAEALKD 345 >gi|303240057|ref|ZP_07326578.1| chromosomal replication initiator protein DnaA [Acetivibrio cellulolyticus CD2] gi|302592326|gb|EFL62053.1| chromosomal replication initiator protein DnaA [Acetivibrio cellulolyticus CD2] Length = 443 Score = 117 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 45/265 (16%), Positives = 101/265 (38%), Gaps = 35/265 (13%) Query: 9 SFFVP-----DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRL---IDSWP 60 +F VP DK N N E+ L + D ++ ++ A + P Sbjct: 78 NFVVPSQENIDKYTNQAEANNEDTLVSVL--NPKYTFDTFVIGNSNRFAHAASLAVAESP 135 Query: 61 SWPSRVVILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSI 103 + + + G G GK+ L + S+K + + I + Sbjct: 136 AKAYNPLFIYGGVGLGKTHLMHAIGHFVLKQNPSLKVLYVSSEKFTNELINAIKDDKNEE 195 Query: 104 LIDTRKPV---LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 + + L++DI + + + FH N++++ + +++++ P V L D Sbjct: 196 FRSKYRNIDILLIDDIQFIAGKERTQEEFFHTFNALYEANKQIILSSDKSPKEI-VTLED 254 Query: 158 -LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216 L SR + + + PD + ++ K + + ++ +I +++ ++ E + Sbjct: 255 RLRSRFEWGLIADMQAPDIETRIAILRKKAQLENLDVPNEIMVFIAEKIASNIRELEGAL 314 Query: 217 DKMDNLALSRGMGITRSLAAEVLKE 241 +++ + IT LA E LK+ Sbjct: 315 NRVIAYSSLTENDITVDLATEALKD 339 >gi|188584643|ref|YP_001916188.1| chromosomal replication initiator protein DnaA [Natranaerobius thermophilus JW/NM-WN-LF] gi|226735829|sp|B2A2Y6|DNAA_NATTJ RecName: Full=Chromosomal replication initiator protein DnaA gi|179349330|gb|ACB83600.1| chromosomal replication initiator protein DnaA [Natranaerobius thermophilus JW/NM-WN-LF] Length = 453 Score = 117 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 87/233 (37%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW-----SD 86 + D ++ +A A + P++ + + G G GK+ L + S Sbjct: 117 NPKYTFDTFVIGNANRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVLSH 176 Query: 87 KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 + ++ + I+ + +L++DI L + + FH Sbjct: 177 QPNYRVVYISSEKFTNEFINAIRDNKTVNFRNKYRNVDILLVDDIQFLAGKEQTQEEFFH 236 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H+ D +++++ P L SR + + I PD + ++ K Sbjct: 237 TFNTLHENDKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDIQAPDLETRIAILRKKAYL 296 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++ I + YI +++ ++ E + ++ + IT+ A E LK+ Sbjct: 297 EKLDIPNDVIVYIANQIDTNIRELEGGLIRVIAYSSMANKKITKETAEEALKD 349 >gi|170764020|ref|ZP_02637629.2| chromosomal replication initiator protein DnaA [Clostridium perfringens B str. ATCC 3626] gi|170710061|gb|EDT22243.1| chromosomal replication initiator protein DnaA [Clostridium perfringens B str. ATCC 3626] Length = 342 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 33/233 (14%), Positives = 87/233 (37%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW------- 84 + ++ ++ A + P+ + + G G GK+ L + Sbjct: 6 NPKYTFQSFVIGNSNRFAHAASLAVAESPAKAYNPLFIYGGVGLGKTHLMHAIGHYILQE 65 Query: 85 ----------SDKSRSTRFSNIAKSLDSILIDTRK---PVLLEDIDLLDFND---TQLFH 128 S+K + + I + + + +L++DI + + + FH Sbjct: 66 NPKAKVVYVSSEKFTNELINAIKDDKNEEFRNKYRKVDVLLIDDIQFIAGKERTQEEFFH 125 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H+ + +++++ P L SR + + I PD + ++ K Sbjct: 126 TFNALHEENKQIILSSDRPPKEIPTLEDRLRSRFECGLIADIQPPDFETRMAILKKKADV 185 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + + ++ YI +++ ++ E + ++ + ++ LA+E LK+ Sbjct: 186 EGLNVPNEVMVYIATKIKSNIRELEGALIRIIAYSSLTNRDVSVDLASEALKD 238 >gi|260654348|ref|ZP_05859838.1| DNA replication initiator protein, ATPase [Jonquetella anthropi E3_33 E1] gi|260630981|gb|EEX49175.1| DNA replication initiator protein, ATPase [Jonquetella anthropi E3_33 E1] Length = 443 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 42/253 (16%), Positives = 86/253 (33%), Gaps = 31/253 (12%) Query: 16 QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGP 72 Q+ +PKN +V + A + P + + G Sbjct: 96 QRVAEPKNPS-----PTGLNPNYKFSSFVVGRSNRLAHAASLAVADNPGSAYSPLFIWGG 150 Query: 73 SGSGKSCLANIWSDKSRST-----------------RFSNIAKSLDSILIDTRK---PVL 112 G GK+ L + + + + I + + + +L Sbjct: 151 VGLGKTHLMHAIGHHALAQNPRLRVTYVSSEKFTNELITAIKNNKTAEFRSKYRHMDLLL 210 Query: 113 LEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 ++DI + + + FH N++H +++++ P L SR + V Sbjct: 211 IDDIQFIAGKESTQEEFFHTFNTLHDNKKQIVLSSDRPPKEISDIEERLVSRFEWGLVTD 270 Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229 I PD + ++ K R + ++AAY+ Q + ++ E ++++ A Sbjct: 271 IQQPDYETRIAILKKKAESRNYPLPDEVAAYLAQNIPSNIRELEGSLNRVIACAELSSEQ 330 Query: 230 ITRSLAAEVLKET 242 IT A E LK+ Sbjct: 331 ITVERAVEWLKDM 343 >gi|229829518|ref|ZP_04455587.1| hypothetical protein GCWU000342_01610 [Shuttleworthia satelles DSM 14600] gi|229791949|gb|EEP28063.1| hypothetical protein GCWU000342_01610 [Shuttleworthia satelles DSM 14600] Length = 456 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 41/277 (14%), Positives = 95/277 (34%), Gaps = 43/277 (15%) Query: 10 FFVPDKQKNDQPKNKEEQ----------LFFSFPRCLGISRDDLLVHSAIEQA----VRL 55 F +P + N +P + Q L + D +V + A + + Sbjct: 84 FILPGQATNLKPSDVVSQGHRLADRENFLSSHL--NPRYTFDTFVVGANNRFAQTASLAV 141 Query: 56 IDSWPSWPSRVVILVGPSGSGKSCLANIWS------DKSRSTRFSNIAKSLDSILIDTRK 109 +S P + + G G GK+ L + S+ + L+ ++ R Sbjct: 142 AES-PGQAYNPLFIYGGPGLGKTHLMHAIGNFILQDSPSKKVLYVTSEDFLNEVIESIRN 200 Query: 110 -----------------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPV 149 +L++DI + + + FH N++H +++T+ P Sbjct: 201 NSSGSMSRFRDKYRTVDILLIDDIQFIIGKESTQEEFFHTFNALHSAGKQIVLTSDRPPK 260 Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209 + SR + + + PD + ++ + + + ++ YI ++ ++ Sbjct: 261 EMETLDTRIRSRFEWGLMADVGSPDYETRMAILRRRCEMDRFSLPDEILDYIASNIKSNI 320 Query: 210 VFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 E ++K+ + IT +A+ L+ D Sbjct: 321 RELEGALNKLIAYSNLEKTTITMEIASRELQNIISPD 357 >gi|296392441|ref|YP_003657325.1| chromosomal replication initiator protein DnaA [Segniliparus rotundus DSM 44985] gi|296179588|gb|ADG96494.1| chromosomal replication initiator protein DnaA [Segniliparus rotundus DSM 44985] Length = 487 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 36/234 (15%), Positives = 85/234 (36%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91 + + ++ ++ A + P+ + + G SG GK+ L + ++ Sbjct: 148 NARYTFETFVIGASNRFAHAATFAVSEAPARAYNPLFIWGDSGLGKTHLLHAAGHYTQRL 207 Query: 92 --RFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFH 128 F S + D + L++DI + + + FH Sbjct: 208 FSGFRVKYVSTEEFTNDFINSLRDDRRVAFKQRYRDVDLLLVDDIQFIAGKEGIQEEFFH 267 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H + +++T+ P L +R + + + P+ + ++ K Sbjct: 268 TFNTLHNSNKQIIITSDRPPKKLAALEDRLRTRFEWGLITDVQPPELETRIAILRKKANI 327 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + +A I R+ER++ E + ++ A +T +LA VL++ Sbjct: 328 DGLEVPDDVAELIASRIERNIRELEGALIRVTAFASLNHQKLTSALAEMVLRDL 381 >gi|149194732|ref|ZP_01871827.1| chromosomal replication initiation protein [Caminibacter mediatlanticus TB-2] gi|149135155|gb|EDM23636.1| chromosomal replication initiation protein [Caminibacter mediatlanticus TB-2] Length = 435 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 41/231 (17%), Positives = 87/231 (37%), Gaps = 26/231 (11%) Query: 36 LGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDKSRSTR 92 + + +V + + A S P + + G G GK+ L + R Sbjct: 100 PEYTFESFIVGPSNQFAYSAAKSVAENPGKNYNPLFIYGGVGLGKTHLIQAIGN-YLKNR 158 Query: 93 FSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFHIIN 131 + I + + + + R+ V L++D+ + + FH N Sbjct: 159 LNVIYVTSEQFMNEFRENVRNQTMDRFHEKYRSCDVLLIDDVQFFAGKEQTQEEFFHTFN 218 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 ++ + +TA P + L SR +A + I P+ + ++I K I Sbjct: 219 ELYNQKKQICLTADRPPKKLQDLVDRLRSRFEAGLIADIQPPELETKIEIIKKKCELNGI 278 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA-LSRGMGITRSLAAEVLKE 241 ++ + +I +++ ++ E ++ K++ +A L IT A + LKE Sbjct: 279 YLPDDVIEFIATKLDDNIREIEGMIVKLNAMAKLLGVSDITIDFAKQTLKE 329 >gi|293391841|ref|ZP_06636175.1| chromosomal replication initiator protein DnaA [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952375|gb|EFE02494.1| chromosomal replication initiator protein DnaA [Aggregatibacter actinomycetemcomitans D7S-1] Length = 453 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 35/235 (14%), Positives = 87/235 (37%), Gaps = 27/235 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLAN-----IWS 85 + ++ + + + A + P + L G +G GK+ L + I + Sbjct: 118 NTKLVFENFVEGKSNQLARAVAQKVADNPGEQTANPLFLYGGTGLGKTHLLHAIGNGIIA 177 Query: 86 DKSRSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLLDFND---TQLF 127 + + ++ ++ + +L++DI + + F Sbjct: 178 NNPNARVVYIHSERFVQQVVAYIRDNKMEEFKKFYRSLDALLVDDIQFFSDKEKTQEEFF 237 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 HI N++ + +++T+ +P L SR I PD + +++K Sbjct: 238 HIFNTLFERGRQIILTSDRYPREIEKIEERLKSRFGWGLTTAIEPPDLETRVAILMKKAE 297 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + +A +I Q++ ++ E ++++ + +G IT E LK+ Sbjct: 298 ENNVDLPHDVAFFIGQKLRTNVRELEGALNRVKAMQEFKGEPITIDFVRETLKDM 352 >gi|320095107|ref|ZP_08026816.1| DNA-directed DNA replication initiator protein [Actinomyces sp. oral taxon 178 str. F0338] gi|319977974|gb|EFW09608.1| DNA-directed DNA replication initiator protein [Actinomyces sp. oral taxon 178 str. F0338] Length = 483 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 34/238 (14%), Positives = 80/238 (33%), Gaps = 31/238 (13%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS--- 88 + + ++ + A + P + + G SG GK+ L + + Sbjct: 139 NPKYTFETFVIGPSNRFAHAAALAVSETPGTSFNPLFIYGDSGLGKTHLLHAIGHYALSL 198 Query: 89 -------------------RSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND--- 123 + R + S + + L++DI + + Sbjct: 199 LPHLKVRYVNSEEFTNEFINAIRLNKTDNSQVEAFHRRYRELDILLIDDIQFIGDKEQTV 258 Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 FH N++++ + +++T+ P + SR + +V + PD + ++ Sbjct: 259 EGFFHTFNALYENNKQIVLTSDVPPAQLNGFEDRMRSRFASGLLVDVQPPDLETRIAILQ 318 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 K + + + YI R+ ++ E + ++ A I LA +LK+ Sbjct: 319 KKATTDSLEVTPDVLEYIASRISSNIRELEGALLRVIAFANLSKERIDLPLAEMLLKD 376 >gi|261417501|ref|YP_003251183.1| chromosomal replication initiation protein [Geobacillus sp. Y412MC61] gi|319765158|ref|YP_004130659.1| chromosomal replication initiator protein DnaA [Geobacillus sp. Y412MC52] gi|261373958|gb|ACX76701.1| chromosomal replication initiator protein DnaA [Geobacillus sp. Y412MC61] gi|317110024|gb|ADU92516.1| chromosomal replication initiator protein DnaA [Geobacillus sp. Y412MC52] Length = 450 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 47/269 (17%), Positives = 98/269 (36%), Gaps = 37/269 (13%) Query: 10 FFVPDKQK--------NDQPKNKEEQLFFSFP---RCLGISRDDLLVHSAIEQAVRLIDS 58 F +P Q + + + K + FP + D ++ S A + Sbjct: 78 FIIPPNQDDEELEFQSSKKKQRKPYEETNDFPQSMLNPKYTFDTFVIGSGNRFAHAASLA 137 Query: 59 WPSWPSRV---VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAK 98 P++ + + G G GK+ L + S+K + + I Sbjct: 138 VAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIEHNPSAKVVYLSSEKFTNEFINAIRD 197 Query: 99 SLDSILIDTRKPV---LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 + + + V L++DI L + + FH N++H+ +++++ P Sbjct: 198 NRPDDFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIP 257 Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 L SR + + I+ PD + ++ K I ++ YI +++ ++ Sbjct: 258 TLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKAEGFDIPNEVMLYIANQIDSNIREL 317 Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKE 241 E + ++ + IT LAAE LK+ Sbjct: 318 EGALIRVVAYSSLINKEITADLAAEALKD 346 >gi|15603026|ref|NP_246098.1| chromosomal replication initiation protein [Pasteurella multocida subsp. multocida str. Pm70] gi|14194669|sp|Q9CLQ4|DNAA_PASMU RecName: Full=Chromosomal replication initiator protein DnaA gi|12721509|gb|AAK03245.1| DnaA [Pasteurella multocida subsp. multocida str. Pm70] Length = 451 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 90/235 (38%), Gaps = 27/235 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWP----SRVVILVGPSGSGKSCLAN-----IWS 85 ++ + + + A + P S + L G +G GK+ L + I S Sbjct: 116 NPKHVFENFVEGKSNQLARAVAQKVADNPGEPSSNPLFLYGGTGLGKTHLLHAIGNGILS 175 Query: 86 DKSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLF 127 + + A + +++ + +L++DI + + F Sbjct: 176 RNTNARVLYIHANNFMQQMVNAVRDNKMDEFKKFYRSLDALLVDDIQFFAEKEKTQEEFF 235 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 HI N++ +++T+ +P L SR I P+ + +++K Sbjct: 236 HIFNNLFDTGRQIILTSDRYPKEIEKLEERLKSRFGWGLTTAIEPPELETRVAILLKKAE 295 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ I++ +++A +I Q++ ++ E ++++ A G IT E LK+ Sbjct: 296 EKNIYLPEEVAFFIGQKLRTNVRDLEGALNRVSANAEFMGAAITIDFVRETLKDM 350 >gi|291297539|ref|YP_003508817.1| chromosomal replication initiator protein DnaA [Stackebrandtia nassauensis DSM 44728] gi|290566759|gb|ADD39724.1| chromosomal replication initiator protein DnaA [Stackebrandtia nassauensis DSM 44728] Length = 566 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 44/250 (17%), Positives = 87/250 (34%), Gaps = 26/250 (10%) Query: 18 NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSG 74 PK Q + S D ++ S+ A + P++ + + G SG Sbjct: 210 RSDPKPVPPQPATATRLNPKYSFDTFVIGSSNRFAHAAAVAVAESPAKAYNPLFIYGDSG 269 Query: 75 SGKSCLANIWS--DKSRSTRFSNIAKSLDSILIDTRKPV------------------LLE 114 GK+ L + ++ S S + D + L++ Sbjct: 270 LGKTHLLHAIGHYAQNLGNAKSVRYVSTEEFTNDFINSLRDDKRQAFQRRYRDVDILLID 329 Query: 115 DI---DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 DI + + + FH N++H + L++T+ P L +R + + I Sbjct: 330 DIQFLERAERTQEEFFHTFNTLHNANKQLVITSDRSPKQLSTLEDRLRTRFEWGLLADIQ 389 Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231 PD + ++ K A ++ +I R+ S+ E + ++ A Sbjct: 390 PPDLETRIAILQKKAAQERLDAPPDALEFIASRINHSIRELEGALIRVTAYASLTNKPAD 449 Query: 232 RSLAAEVLKE 241 +LA EVL++ Sbjct: 450 LALAQEVLRD 459 >gi|289523933|ref|ZP_06440787.1| DNA replication initiator protein, ATPase [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502589|gb|EFD23753.1| DNA replication initiator protein, ATPase [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 446 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 42/253 (16%), Positives = 85/253 (33%), Gaps = 28/253 (11%) Query: 17 KNDQPKNKEEQLFFSFP--RCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVG 71 + + +N +Q P D +V + A + P + + G Sbjct: 88 EQKRAENALKQPPPPNPDGLNPNYYFDTFVVGKSNRLAHAASLAVAESPGVAYNPLFIWG 147 Query: 72 PSGSGKSCLANIW-----SDKSRSTRFSNIAKSLDSILIDTR---------------KPV 111 G GK+ L + + ++ + LI + Sbjct: 148 GVGLGKTHLMHAIGHYVLEHLPGARVVYASSEKFTNELISAIQNNKTQEFKAKFRNVDIL 207 Query: 112 LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168 L++DI L + + FH NS+H +++++ P L SR + V Sbjct: 208 LIDDIQFLANKESTQEEFFHTFNSLHNAKRQIVLSSDRPPKEIQSIEQRLVSRFEWGLVT 267 Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228 I PD + ++ K R I + + ++ Q + ++ E ++++ + Sbjct: 268 DIQPPDLETRIAILQKKAEFRGYDIPEDVVYFLAQNIPSNIRELEGALNRIIACSQLNME 327 Query: 229 GITRSLAAEVLKE 241 IT A E LK+ Sbjct: 328 PITVENATEWLKD 340 >gi|187777367|ref|ZP_02993840.1| hypothetical protein CLOSPO_00923 [Clostridium sporogenes ATCC 15579] gi|187774295|gb|EDU38097.1| hypothetical protein CLOSPO_00923 [Clostridium sporogenes ATCC 15579] Length = 448 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 35/233 (15%), Positives = 90/233 (38%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW------- 84 + D ++ ++ A + P+ + + G G GK+ L + Sbjct: 112 NPKYTFDSFVIGNSNRFAHAASLAVAESPAKAYNPLFIYGGVGLGKTHLMHAIGHYILNN 171 Query: 85 ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128 S+K + ++I + + + + L++DI + + + FH Sbjct: 172 NPKSQVVYVSSEKFTNELINSIKDDKNVEFRNKYRNIDILLVDDIQFIAGKERTQEEFFH 231 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++++ + +++++ P L SR + + I PD + ++ K Sbjct: 232 TFNALYEANKQIIISSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDFETRMAILKKKADV 291 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++ I ++ YI +++ ++ E + ++ + I+ LA+E LK+ Sbjct: 292 EKLNIPNEVMVYIATKIKSNIRELEGALIRIVAFSSLTNKEISVDLASEALKD 344 >gi|170760502|ref|YP_001785336.1| chromosomal replication initiation protein [Clostridium botulinum A3 str. Loch Maree] gi|226735794|sp|B1L1K6|DNAA_CLOBM RecName: Full=Chromosomal replication initiator protein DnaA gi|169407491|gb|ACA55902.1| chromosomal replication initiator protein DnaA [Clostridium botulinum A3 str. Loch Maree] Length = 445 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 35/233 (15%), Positives = 90/233 (38%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW------- 84 + D ++ ++ A + P+ + + G G GK+ L + Sbjct: 109 NPKYTFDSFVIGNSNRFAHAASLAVAESPAKAYNPLFIYGGVGLGKTHLMHAIGHYILHN 168 Query: 85 ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128 S+K + ++I + + + + L++DI + + + FH Sbjct: 169 NPKSQVVYVSSEKFTNELINSIKDDKNVEFRNKYRNIDILLVDDIQFIAGKERTQEEFFH 228 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++++ + +++++ P L SR + + I PD + ++ K Sbjct: 229 TFNALYEANKQIIISSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDFETRMAILKKKADV 288 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++ I ++ YI +++ ++ E + ++ + I+ LA+E LK+ Sbjct: 289 EKLNIPNEVMVYIATKIKSNIRELEGALIRIVAFSSLTNKEISVDLASEALKD 341 >gi|153940298|ref|YP_001389370.1| chromosomal replication initiation protein [Clostridium botulinum F str. Langeland] gi|168181116|ref|ZP_02615780.1| chromosomal replication initiator protein DnaA [Clostridium botulinum NCTC 2916] gi|170756151|ref|YP_001779627.1| chromosomal replication initiation protein [Clostridium botulinum B1 str. Okra] gi|226947223|ref|YP_002802314.1| chromosomal replication initiator protein DnaA [Clostridium botulinum A2 str. Kyoto] gi|166201878|sp|A7G9B0|DNAA_CLOBL RecName: Full=Chromosomal replication initiator protein DnaA gi|226735793|sp|B1IDU3|DNAA_CLOBK RecName: Full=Chromosomal replication initiator protein DnaA gi|254777894|sp|C1FPH3|DNAA_CLOBJ RecName: Full=Chromosomal replication initiator protein DnaA gi|152936194|gb|ABS41692.1| chromosomal replication initiator protein DnaA [Clostridium botulinum F str. Langeland] gi|169121363|gb|ACA45199.1| chromosomal replication initiator protein DnaA [Clostridium botulinum B1 str. Okra] gi|182668171|gb|EDT80150.1| chromosomal replication initiator protein DnaA [Clostridium botulinum NCTC 2916] gi|226843194|gb|ACO85860.1| chromosomal replication initiator protein DnaA [Clostridium botulinum A2 str. Kyoto] gi|295317477|gb|ADF97854.1| chromosomal replication initiator protein DnaA [Clostridium botulinum F str. 230613] Length = 445 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 35/233 (15%), Positives = 90/233 (38%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW------- 84 + D ++ ++ A + P+ + + G G GK+ L + Sbjct: 109 NPKYTFDSFVIGNSNRFAHAASLAVAESPAKAYNPLFIYGGVGLGKTHLMHAIGHYILHN 168 Query: 85 ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128 S+K + ++I + + + + L++DI + + + FH Sbjct: 169 NPKSQVVYVSSEKFTNELINSIKDDKNVEFRNKYRNIDILLVDDIQFIAGKERTQEEFFH 228 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++++ + +++++ P L SR + + I PD + ++ K Sbjct: 229 TFNALYEANKQIIISSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDFETRMAILKKKADV 288 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++ I ++ YI +++ ++ E + ++ + I+ LA+E LK+ Sbjct: 289 EKLNIPNEVMVYIATKIKSNIRELEGALIRIVAFSSLTNKEISVDLASEALKD 341 >gi|28376975|ref|NP_783867.1| chromosomal replication initiation protein DnaA [Lactobacillus plantarum WCFS1] gi|254555170|ref|YP_003061587.1| chromosomal replication initiation protein DnaA [Lactobacillus plantarum JDM1] gi|300769106|ref|ZP_07078995.1| DNA-directed DNA replication initiator protein [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308179192|ref|YP_003923320.1| chromosomal replication initiation protein DnaA [Lactobacillus plantarum subsp. plantarum ST-III] gi|38257539|sp|Q890K8|DNAA_LACPL RecName: Full=Chromosomal replication initiator protein DnaA gi|28269806|emb|CAD62703.1| chromosomal replication initiation protein DnaA [Lactobacillus plantarum WCFS1] gi|254044097|gb|ACT60890.1| chromosomal replication initiation protein DnaA [Lactobacillus plantarum JDM1] gi|300493346|gb|EFK28525.1| DNA-directed DNA replication initiator protein [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308044683|gb|ADN97226.1| chromosomal replication initiation protein DnaA [Lactobacillus plantarum subsp. plantarum ST-III] Length = 455 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 82/236 (34%), Gaps = 28/236 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW------- 84 + D ++ + A + P + G G GK+ L + Sbjct: 120 NPKYTFDTFVIGKGNQMAHAAALVVSEEPGTMYNPLFFYGGVGLGKTHLMHAIGNKLLET 179 Query: 85 ----------SDKSRSTRFSNIAKSLDSILIDTRK---PVLLEDIDLLDFND---TQLFH 128 S+ + + I + + +L++DI + + FH Sbjct: 180 DPTSNIKYVTSESFTNELINAIQTKKQEAFREEYRNVDLLLVDDIQFFANKEATQEEFFH 239 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 N++++ D +++T+ P L D L SR K V I+ PD + ++ Sbjct: 240 TFNALYEDDKQIVLTSDRLPNEIP-QLQDRLVSRFKWGLSVDITPPDLETRIAILRNKAD 298 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 I I +YI +++ ++ E + ++ + IT SL A+ LK Sbjct: 299 LEGIEIPDDTLSYIAGQIDSNVRELEGALARVQAYSRLNNSPITTSLVADALKSLH 354 >gi|315286682|ref|ZP_07872175.1| chromosomal replication initiator protein DnaA [Listeria ivanovii FSL F6-596] gi|313630903|gb|EFR98594.1| chromosomal replication initiator protein DnaA [Listeria ivanovii FSL F6-596] Length = 420 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 85/233 (36%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW-----SD 86 D ++ S A + P++ + + G G GK+ L + Sbjct: 111 NPRYVFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAVGHYVQQH 170 Query: 87 KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 K + ++ + I + + +L++DI L + + FH Sbjct: 171 KDNAKVMYLSSEKFTNEFISSIRDNKTEEFRTKYRNVDVLLIDDIQFLAGKEGTQEEFFH 230 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N+++ +++++ P L SR + + I+ PD + ++ K Sbjct: 231 TFNTLYDEQKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 290 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I ++ YI +++ ++ E + ++ + IT LAAE LK+ Sbjct: 291 DGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLVNKDITAGLAAEALKD 343 >gi|289433374|ref|YP_003463246.1| chromosomal replication initiator protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289169618|emb|CBH26152.1| chromosomal replication initiator protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 451 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 85/233 (36%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW-----SD 86 D ++ S A + P++ + + G G GK+ L + Sbjct: 111 NPRYVFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAVGHYVQQH 170 Query: 87 KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 K + ++ + I + + +L++DI L + + FH Sbjct: 171 KDNAKVMYLSSEKFTNEFISSIRDNKTEEFRTKYRNVDVLLIDDIQFLAGKEGTQEEFFH 230 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N+++ +++++ P L SR + + I+ PD + ++ K Sbjct: 231 TFNTLYDEQKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 290 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I ++ YI +++ ++ E + ++ + IT LAAE LK+ Sbjct: 291 DGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLVNKDITAGLAAEALKD 343 >gi|258611656|ref|ZP_05241189.2| chromosomal replication initiator protein dnaA [Listeria monocytogenes FSL R2-503] gi|258605133|gb|EEW17741.1| chromosomal replication initiator protein dnaA [Listeria monocytogenes FSL R2-503] Length = 433 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 85/233 (36%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW-----SD 86 D ++ S A + P++ + + G G GK+ L + Sbjct: 93 NPRYVFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAVGHYVQQH 152 Query: 87 KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 K + ++ + I + + +L++DI L + + FH Sbjct: 153 KDNAKVMYLSSEKFTNEFISSIRDNKTEEFRTKYRNVDVLLIDDIQFLAGKEGTQEEFFH 212 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N+++ +++++ P L SR + + I+ PD + ++ K Sbjct: 213 TFNTLYDEQKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 272 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I ++ YI +++ ++ E + ++ + IT LAAE LK+ Sbjct: 273 DGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLVNKDITAGLAAEALKD 325 >gi|226222640|ref|YP_002756747.1| Chromosomal replication initiation protein DnaA [Listeria monocytogenes Clip81459] gi|259645254|sp|C1L2Z8|DNAA_LISMC RecName: Full=Chromosomal replication initiator protein DnaA gi|225875102|emb|CAS03790.1| Chromosomal replication initiation protein DnaA [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 451 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 85/233 (36%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW-----SD 86 D ++ S A + P++ + + G G GK+ L + Sbjct: 111 NPRYVFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAVGHYVQQH 170 Query: 87 KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 K + ++ + I + + +L++DI L + + FH Sbjct: 171 KDNAKVMYLSSEKFTNEFISSIRDNKTEEFRTKYRNVDVLLIDDIQFLAGKEGTQEEFFH 230 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N+++ +++++ P L SR + + I+ PD + ++ K Sbjct: 231 TFNTLYDEQKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 290 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I ++ YI +++ ++ E + ++ + IT LAAE LK+ Sbjct: 291 DGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLVNKDITAGLAAEALKD 343 >gi|224503076|ref|ZP_03671383.1| chromosomal replication initiation protein [Listeria monocytogenes FSL R2-561] Length = 443 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 85/233 (36%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW-----SD 86 D ++ S A + P++ + + G G GK+ L + Sbjct: 111 NPRYVFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAVGHYVQQH 170 Query: 87 KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 K + ++ + I + + +L++DI L + + FH Sbjct: 171 KDNAKVMYLSSEKFTNEFISSIRDNKTEEFRTKYRNVDVLLIDDIQFLAGKEGTQEEFFH 230 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N+++ +++++ P L SR + + I+ PD + ++ K Sbjct: 231 TFNTLYDEQKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 290 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I ++ YI +++ ++ E + ++ + IT LAAE LK+ Sbjct: 291 DGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLVNKDITAGLAAEALKD 343 >gi|16799080|ref|NP_469348.1| chromosomal replication initiation protein [Listeria innocua Clip11262] gi|116871423|ref|YP_848204.1| chromosomal replication initiation protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|21362477|sp|Q92FV2|DNAA_LISIN RecName: Full=Chromosomal replication initiator protein DnaA gi|123460548|sp|A0AEI7|DNAA_LISW6 RecName: Full=Chromosomal replication initiator protein DnaA gi|16412422|emb|CAC95234.1| Chromosomal replication initiation protein DnaA [Listeria innocua Clip11262] gi|116740301|emb|CAK19419.1| chromosomal replication initiation protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|313621673|gb|EFR92458.1| chromosomal replication initiator protein DnaA [Listeria innocua FSL S4-378] gi|313625799|gb|EFR95415.1| chromosomal replication initiator protein DnaA [Listeria innocua FSL J1-023] Length = 451 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 85/233 (36%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW-----SD 86 D ++ S A + P++ + + G G GK+ L + Sbjct: 111 NPRYVFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAVGHYVQQH 170 Query: 87 KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 K + ++ + I + + +L++DI L + + FH Sbjct: 171 KDNAKVMYLSSEKFTNEFISSIRDNKTEEFRTKYRNVDVLLIDDIQFLAGKEGTQEEFFH 230 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N+++ +++++ P L SR + + I+ PD + ++ K Sbjct: 231 TFNTLYDEQKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 290 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I ++ YI +++ ++ E + ++ + IT LAAE LK+ Sbjct: 291 DGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLVNKDITAGLAAEALKD 343 >gi|16802049|ref|NP_463534.1| chromosomal replication initiation protein [Listeria monocytogenes EGD-e] gi|46906225|ref|YP_012614.1| chromosomal replication initiation protein [Listeria monocytogenes serotype 4b str. F2365] gi|217965934|ref|YP_002351612.1| chromosomal replication initiator protein DnaA [Listeria monocytogenes HCC23] gi|224498306|ref|ZP_03666655.1| chromosomal replication initiation protein [Listeria monocytogenes Finland 1988] gi|254824779|ref|ZP_05229780.1| chromosomal replication initiation protein DnaA [Listeria monocytogenes FSL J1-194] gi|254827425|ref|ZP_05232112.1| chromosomal replication initiation protein DnaA [Listeria monocytogenes FSL N3-165] gi|254830707|ref|ZP_05235362.1| chromosomal replication initiation protein [Listeria monocytogenes 10403S] gi|254899685|ref|ZP_05259609.1| chromosomal replication initiation protein [Listeria monocytogenes J0161] gi|254913112|ref|ZP_05263124.1| chromosomal replication initiator protein DnaA [Listeria monocytogenes J2818] gi|254930868|ref|ZP_05264227.1| chromosomal replication initiator protein DnaA [Listeria monocytogenes HPB2262] gi|254937493|ref|ZP_05269190.1| chromosomal replication initiator protein DnaA [Listeria monocytogenes F6900] gi|254991923|ref|ZP_05274113.1| chromosomal replication initiation protein [Listeria monocytogenes FSL J2-064] gi|255026750|ref|ZP_05298736.1| chromosomal replication initiation protein [Listeria monocytogenes FSL J2-003] gi|255028897|ref|ZP_05300848.1| chromosomal replication initiation protein [Listeria monocytogenes LO28] gi|255520069|ref|ZP_05387306.1| chromosomal replication initiation protein [Listeria monocytogenes FSL J1-175] gi|284803265|ref|YP_003415130.1| chromosomal replication initiation protein [Listeria monocytogenes 08-5578] gi|284996406|ref|YP_003418174.1| chromosomal replication initiation protein [Listeria monocytogenes 08-5923] gi|290892037|ref|ZP_06555034.1| chromosomal replication initiator protein DnaA [Listeria monocytogenes FSL J2-071] gi|300763385|ref|ZP_07073383.1| chromosomal replication initiator protein DnaA [Listeria monocytogenes FSL N1-017] gi|315273163|ref|ZP_07869210.1| chromosomal replication initiator protein DnaA [Listeria marthii FSL S4-120] gi|21362468|sp|Q8YAW2|DNAA_LISMO RecName: Full=Chromosomal replication initiator protein DnaA gi|61212634|sp|Q725H0|DNAA_LISMF RecName: Full=Chromosomal replication initiator protein DnaA gi|254777905|sp|B8DAQ9|DNAA_LISMH RecName: Full=Chromosomal replication initiator protein DnaA gi|16409360|emb|CAC98216.1| Chromosomal replication initiation protein DnaA [Listeria monocytogenes EGD-e] gi|46879489|gb|AAT02791.1| chromosomal replication initiator protein DnaA [Listeria monocytogenes serotype 4b str. F2365] gi|217335204|gb|ACK40998.1| chromosomal replication initiator protein DnaA [Listeria monocytogenes HCC23] gi|258599803|gb|EEW13128.1| chromosomal replication initiation protein DnaA [Listeria monocytogenes FSL N3-165] gi|258610095|gb|EEW22703.1| chromosomal replication initiator protein DnaA [Listeria monocytogenes F6900] gi|284058827|gb|ADB69768.1| chromosomal replication initiation protein [Listeria monocytogenes 08-5578] gi|284061873|gb|ADB72812.1| chromosomal replication initiation protein [Listeria monocytogenes 08-5923] gi|290558631|gb|EFD92148.1| chromosomal replication initiator protein DnaA [Listeria monocytogenes FSL J2-071] gi|293582413|gb|EFF94445.1| chromosomal replication initiator protein DnaA [Listeria monocytogenes HPB2262] gi|293591114|gb|EFF99448.1| chromosomal replication initiator protein DnaA [Listeria monocytogenes J2818] gi|293594018|gb|EFG01779.1| chromosomal replication initiation protein DnaA [Listeria monocytogenes FSL J1-194] gi|300515662|gb|EFK42711.1| chromosomal replication initiator protein DnaA [Listeria monocytogenes FSL N1-017] gi|307569524|emb|CAR82703.1| chromosomal replication initiator protein [Listeria monocytogenes L99] gi|313616214|gb|EFR89292.1| chromosomal replication initiator protein DnaA [Listeria marthii FSL S4-120] gi|328468322|gb|EGF39328.1| chromosomal replication initiation protein [Listeria monocytogenes 1816] gi|332310334|gb|EGJ23429.1| Chromosomal replication initiator protein dnaA [Listeria monocytogenes str. Scott A] Length = 451 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 85/233 (36%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW-----SD 86 D ++ S A + P++ + + G G GK+ L + Sbjct: 111 NPRYVFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAVGHYVQQH 170 Query: 87 KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 K + ++ + I + + +L++DI L + + FH Sbjct: 171 KDNAKVMYLSSEKFTNEFISSIRDNKTEEFRTKYRNVDVLLIDDIQFLAGKEGTQEEFFH 230 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N+++ +++++ P L SR + + I+ PD + ++ K Sbjct: 231 TFNTLYDEQKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 290 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I ++ YI +++ ++ E + ++ + IT LAAE LK+ Sbjct: 291 DGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLVNKDITAGLAAEALKD 343 >gi|47093227|ref|ZP_00231000.1| chromosomal replication initiator protein DnaA [Listeria monocytogenes str. 4b H7858] gi|47018421|gb|EAL09181.1| chromosomal replication initiator protein DnaA [Listeria monocytogenes str. 4b H7858] Length = 343 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 85/233 (36%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW-----SD 86 D ++ S A + P++ + + G G GK+ L + Sbjct: 93 NPRYVFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAVGHYVQQH 152 Query: 87 KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 K + ++ + I + + +L++DI L + + FH Sbjct: 153 KDNAKVMYLSSEKFTNEFISSIRDNKTEEFRTKYRNVDVLLIDDIQFLAGKEGTQEEFFH 212 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N+++ +++++ P L SR + + I+ PD + ++ K Sbjct: 213 TFNTLYDEQKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 272 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I ++ YI +++ ++ E + ++ + IT LAAE LK+ Sbjct: 273 DGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLVNKDITAGLAAEALKD 325 >gi|56418536|ref|YP_145854.1| chromosomal replication initiation protein [Geobacillus kaustophilus HTA426] gi|297528377|ref|YP_003669652.1| chromosomal replication initiator protein DnaA [Geobacillus sp. C56-T3] gi|61212478|sp|Q5L3Z2|DNAA_GEOKA RecName: Full=Chromosomal replication initiator protein DnaA gi|56378378|dbj|BAD74286.1| chromosome replication initiator protein [Geobacillus kaustophilus HTA426] gi|297251629|gb|ADI25075.1| chromosomal replication initiator protein DnaA [Geobacillus sp. C56-T3] Length = 450 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 47/269 (17%), Positives = 98/269 (36%), Gaps = 37/269 (13%) Query: 10 FFVPDKQK--------NDQPKNKEEQLFFSFP---RCLGISRDDLLVHSAIEQAVRLIDS 58 F +P Q + + + K + FP + D ++ S A + Sbjct: 78 FIIPPNQDDEELEFQSSKKKQRKPYEETNDFPQSMLNPKYTFDTFVIGSGNRFAHAASLA 137 Query: 59 WPSWPSRV---VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAK 98 P++ + + G G GK+ L + S+K + + I Sbjct: 138 VAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIEHNPSAKVVYLSSEKFTNEFINAIRD 197 Query: 99 SLDSILIDTRKPV---LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 + + + V L++DI L + + FH N++H+ +++++ P Sbjct: 198 NRPDDFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIP 257 Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 L SR + + I+ PD + ++ K I ++ YI +++ ++ Sbjct: 258 TLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKAEGFDIPNEVMLYIANQIDSNIREL 317 Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKE 241 E + ++ + IT LAAE LK+ Sbjct: 318 EGALIRVVAYSSLINKEITADLAAEALKD 346 >gi|226309588|ref|YP_002769482.1| chromosomal replication initiation protein [Brevibacillus brevis NBRC 100599] gi|226092536|dbj|BAH40978.1| chromosomal replication initiator protein DnaA [Brevibacillus brevis NBRC 100599] Length = 453 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 42/256 (16%), Positives = 96/256 (37%), Gaps = 28/256 (10%) Query: 12 VPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VI 68 VP + ++ P ++Q + D ++ S A + P++ + Sbjct: 95 VPRVKMSEPPTVADDQPPSIL--NPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLF 152 Query: 69 LVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDTRK-------------- 109 + G G GK+ L + + + ++ + I++ + Sbjct: 153 IYGGVGLGKTHLMHAIGHYVIQHNPSAKVVYLSSEKFTNEFINSIRDNKAVEFRNKYRSV 212 Query: 110 -PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 +L++DI L + + FH N++H+ +++++ P L SR + Sbjct: 213 DVLLIDDIQFLAGKESTQEEFFHTFNALHEESKQIIISSDRPPKEIPTLEDRLRSRFEWG 272 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 + I PD + ++ K + I ++ AYI +++ ++ E + ++ + Sbjct: 273 LITDIQPPDLETRIAILRKKAKAENLDIPNEVMAYIANQIDSNIRELEGALIRVVAYSSL 332 Query: 226 RGMGITRSLAAEVLKE 241 I LAAE LK+ Sbjct: 333 INRDIDTQLAAEALKD 348 >gi|317509427|ref|ZP_07967045.1| chromosomal replication initiator protein DnaA [Segniliparus rugosus ATCC BAA-974] gi|316252256|gb|EFV11708.1| chromosomal replication initiator protein DnaA [Segniliparus rugosus ATCC BAA-974] Length = 500 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 40/257 (15%), Positives = 89/257 (34%), Gaps = 33/257 (12%) Query: 19 DQPKNKEEQLFFSFPR-------CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVI 68 + QL P + D ++ ++ A + P+ + Sbjct: 138 AAEEQAPPQLSVVAPATDTTTSLNARYTFDTFVIGASNRFAHAATFAVSEAPARAYNPLF 197 Query: 69 LVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPV--------------- 111 + G SG GK+ L + ++ F S + D + Sbjct: 198 IWGDSGLGKTHLLHAAGHYTQRLFSGFRVKYVSTEEFTNDFINSLRDDRRVAFKQRYRDV 257 Query: 112 ---LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 L++DI + + + FH N++H + +++T+ P L +R + Sbjct: 258 DLLLVDDIQFIAGKEGIQEEFFHTFNTLHNSNKQIVITSDRPPKKLAALEDRLRTRFEWG 317 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 + + P+ + ++ K + + +A I R+ER++ E + ++ A Sbjct: 318 LITDVQPPELETRIAILRKKANIDGLDVPDDVAELIASRIERNIRELEGALIRVTAFASL 377 Query: 226 RGMGITRSLAAEVLKET 242 +T +LA VL++ Sbjct: 378 NHQKLTAALAEMVLRDL 394 >gi|291548768|emb|CBL25030.1| chromosomal replication initiator protein DnaA [Ruminococcus torques L2-14] Length = 456 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 44/247 (17%), Positives = 84/247 (34%), Gaps = 35/247 (14%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLAN-----IWSD 86 + D +V S A + P + L G G GK+ L + I Sbjct: 111 NPKYTFDTFVVGSNNNFAHAASLAVAESPGEIYNPLFLYGGVGLGKTHLMHSVAHYILEH 170 Query: 87 KSRSTRFSNIAKSLDSILIDT---------------------RKPVLLEDIDLLDFND-- 123 +++ + LID +L++DI + + Sbjct: 171 DPSKKVLYVTSETFTNELIDALKVGKNGNELAMTTFREKYRNNDVLLIDDIQFIIGKEST 230 Query: 124 -TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 + FH N +H +++++ P L +R + + IS PD + ++ Sbjct: 231 QEEFFHTFNHLHVSGKQIIISSDKPPKDIETLEARLRTRFEWGLIADISSPDYETRMAIL 290 Query: 183 VKMFADRQI---FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 K + I ++ YI ++ ++ E ++K+ L+ I LAAE L Sbjct: 291 RKKEELDGLEKYHIPDEVMQYIANNIKSNIRELEGSLNKLIALSNLENKPIDIPLAAEAL 350 Query: 240 KETQQCD 246 K+ D Sbjct: 351 KDMISPD 357 >gi|224372071|ref|YP_002606443.1| chromosomal replication initiator protein DnaA [Nautilia profundicola AmH] gi|254777909|sp|B9L735|DNAA_NAUPA RecName: Full=Chromosomal replication initiator protein DnaA gi|223588880|gb|ACM92616.1| chromosomal replication initiator protein DnaA [Nautilia profundicola AmH] Length = 436 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 41/230 (17%), Positives = 88/230 (38%), Gaps = 24/230 (10%) Query: 36 LGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIW-------- 84 + + +V + + A S P + + G G GK+ L Sbjct: 101 PEYTFESFIVGPSNQFAYTAAKSVAENPGKNYNPLFIYGGVGLGKTHLLQAIGNYLKSSL 160 Query: 85 ------SDKSRSTRFSNIAKSLDSILIDTRK---PVLLEDIDLLDFND---TQLFHIINS 132 S++ + NI + + +L++D+ + + FH N Sbjct: 161 NVLYVTSEQFMNEFTENIRMKTPERFHEKYRNCDVLLIDDVQFFAGKERTQEEFFHTFNE 220 Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 ++ + +TA P + L SR +A +V I P+ + ++I K I+ Sbjct: 221 LYNQKKQICLTADRPPKKLYDLVDRLRSRFEAGLIVDIQPPELETKIEIIRKKCELNGIY 280 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVLKE 241 + +++ YI +++ ++ E ++ K++ ++ G IT A + LKE Sbjct: 281 LPEEIIEYIATKLDSNIREIEGMITKINAMSKILGISEITLDFAKQALKE 330 >gi|255527586|ref|ZP_05394450.1| chromosomal replication initiator protein DnaA [Clostridium carboxidivorans P7] gi|296186784|ref|ZP_06855185.1| chromosomal replication initiator protein DnaA [Clostridium carboxidivorans P7] gi|255508719|gb|EET85095.1| chromosomal replication initiator protein DnaA [Clostridium carboxidivorans P7] gi|296048498|gb|EFG87931.1| chromosomal replication initiator protein DnaA [Clostridium carboxidivorans P7] Length = 450 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 88/233 (37%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW------- 84 + D ++ ++ A + P++ + + G G GK+ L + Sbjct: 114 NPKYTFDSFVIGNSNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYILEN 173 Query: 85 ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128 S+K + ++I + + + + L++DI + + + FH Sbjct: 174 NPSSKVVYVSSEKFTNELINSIKDDKNVDFRNKYRNIDVLLIDDIQFIAGKERTQEEFFH 233 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H +++++ P L SR + + I PD + ++ K Sbjct: 234 TFNALHDATKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDFETRMAILKKKADV 293 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I ++ YI +++ ++ E + ++ + I+ LAAE LK+ Sbjct: 294 ENLNIPNEVMVYIATKIKSNIRELEGALIRIVAFSSLTNKEISVDLAAEALKD 346 >gi|150014893|ref|YP_001307147.1| chromosomal replication initiation protein [Clostridium beijerinckii NCIMB 8052] gi|189044634|sp|A6LPB1|DNAA_CLOB8 RecName: Full=Chromosomal replication initiator protein DnaA gi|149901358|gb|ABR32191.1| chromosomal replication initiator protein DnaA [Clostridium beijerinckii NCIMB 8052] Length = 449 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 35/233 (15%), Positives = 87/233 (37%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW------- 84 + + ++ ++ A + P+ + + G G GK+ L + Sbjct: 113 NPKYTFNSFVIGNSNRFAHAASLAVAESPAKAYNPLFIYGGVGLGKTHLMHAIGHYILDG 172 Query: 85 ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128 S+K + + I + + + V L++DI + + + FH Sbjct: 173 NPNAKVVYVSSEKFTNELINAIKDDKNEEFRNKYRNVDILLIDDIQFIAGKERTQEEFFH 232 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H + +++++ P L SR + + I +PD + ++ K Sbjct: 233 TFNALHDANKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQVPDFETRMAILKKKADV 292 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + + ++ YI +++ ++ E + ++ + +T LA E LK+ Sbjct: 293 ENLNVANEVMGYIATKIKSNIRELEGALIRIIAYSSLTNREVTVDLATEALKD 345 >gi|229917455|ref|YP_002886101.1| chromosomal replication initiator protein DnaA [Exiguobacterium sp. AT1b] gi|259645250|sp|C4KZZ3|DNAA_EXISA RecName: Full=Chromosomal replication initiator protein DnaA gi|229468884|gb|ACQ70656.1| chromosomal replication initiator protein DnaA [Exiguobacterium sp. AT1b] Length = 459 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 43/263 (16%), Positives = 94/263 (35%), Gaps = 37/263 (14%) Query: 5 KEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS 64 ++ +P K++ D QL + ++ S A + P+ Sbjct: 105 TKEQPVLLPSKEEGDLG-----QL------NDKYIFETFVIGSGNRFAHAASLAVAEAPA 153 Query: 65 RV---VILVGPSGSGKSCLANIWS-----DKSRSTRFSNIAKSLDSILIDTRK------- 109 R + + G G GK+ L + K + ++ + I++ + Sbjct: 154 RAYNPLFIYGGVGLGKTHLMHAIGHYVKGQKPGARIAYVSSEKFTNEFINSIRDNKTGEF 213 Query: 110 --------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158 +L++DI L + + FH N++H +++++ P L Sbjct: 214 RNRYRNIDVLLIDDIQFLAGKEQTQEEFFHTFNALHNDQKQIVISSDRPPKEIPTLEDRL 273 Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218 SR + + I+ PD + ++ K + I ++ YI +++ ++ E + + Sbjct: 274 RSRFEWGLITDITPPDLETRIAILRKKATAEGLDISNEVMLYIANQIDTNIRELEGALTR 333 Query: 219 MDNLALSRGMGITRSLAAEVLKE 241 + A G I +AAE L Sbjct: 334 VVAYAKLVGRPIDPDVAAEALHN 356 >gi|163755431|ref|ZP_02162551.1| chromosomal replication initiator protein [Kordia algicida OT-1] gi|161324851|gb|EDP96180.1| chromosomal replication initiator protein [Kordia algicida OT-1] Length = 475 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 39/259 (15%), Positives = 91/259 (35%), Gaps = 37/259 (14%) Query: 10 FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66 F +P + E QL + D+ L + A + + P Sbjct: 125 FIIPGIRNV----KIESQL------NPNYNFDNFLEGDSNRLARSAGMAVANKPGGTSFN 174 Query: 67 -VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTR 108 +++ G G GK+ +A+ ++K ++ K+ + I Sbjct: 175 PLLIFGGVGLGKTHIAHAIGVEIKDKYPEKTVLYISAEKFTQQYIESVKKNTRNDFIHFY 234 Query: 109 KPV---LLEDID---LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 + + +++D+ FHI N +HQ +++T+ PV L SR Sbjct: 235 QLIDVLIIDDVQFFSGKSGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSRF 294 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 K ++ PD + ++ + + + Y+ + ++ ++ E + + Sbjct: 295 KWGLSAELQTPDFETRVSIVKNKLYRDGVEMPNDIVEYVAKNIKSNVRELEGAIISLIAQ 354 Query: 223 ALSRGMGITRSLAAEVLKE 241 + +T LA +V+++ Sbjct: 355 SSFNKKEVTIELAKQVVEK 373 >gi|302384445|ref|YP_003820267.1| chromosomal replication initiator protein DnaA [Clostridium saccharolyticum WM1] gi|302195073|gb|ADL02644.1| chromosomal replication initiator protein DnaA [Clostridium saccharolyticum WM1] Length = 458 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 42/236 (17%), Positives = 84/236 (35%), Gaps = 29/236 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLAN-----IWSD 86 + D +V + A + P + + G G GK+ L + I + Sbjct: 119 NPKYTFDTFVVGANNNLAHAASLAVAESPGEIYNPLFIYGGVGLGKTHLMHSIGHFILKN 178 Query: 87 KSRSTRFSNIAKSLDSILIDT------------------RKPVLLEDIDLLDFND---TQ 125 + ++ + LID +L++DI + + + Sbjct: 179 NPAAKVLYVTSEKFTNELIDAIRNKNNFSPTEFREKYRNNDVLLIDDIQFIIGKESTQEE 238 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 FH N++++ +++++ P L SR + V I PD + ++ K Sbjct: 239 FFHTFNALYEAKKQIIISSDKPPKEIETLEERLRSRFEWGLTVDIQSPDYETRMAILRKK 298 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ID ++ YI ++ ++ E + K+ L+ IT LA E LK+ Sbjct: 299 EEMEGYNIDNEVIKYIATNIKSNIRELEGALTKIVALSRLDNKEITVELAEEALKD 354 >gi|291543411|emb|CBL16520.1| chromosomal replication initiator protein DnaA [Ruminococcus sp. 18P13] Length = 455 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 42/238 (17%), Positives = 91/238 (38%), Gaps = 37/238 (15%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPSRV-------VILVGPSGSGKSCLANIWSDKSRS 90 + D +V + E A + + + GPSG GK+ L +++ R Sbjct: 114 YTFDTFIVGKSNEFAYAACTAVAKHDRNKASDTYNPLFIYGPSGLGKTHLMTAIANEMRR 173 Query: 91 T-----RFSNIAKSLDSILIDT----------------RKPVLLEDIDLLDFND---TQL 126 ++ + LI+ +L++D+ + D + Sbjct: 174 NDPNLNIVYVTGETFANELIEAIQKKQDTSLFHDKYRNADVLLVDDVQFIAGKDSTQEEF 233 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH N +H +++T+ P + + SR ++ + IS PD + +I + Sbjct: 234 FHTFNKLHSEGKQIVLTSDRPPKDIKILEDRIRSRFESGLIADISTPDFETRIAIIRRKA 293 Query: 187 ADRQIFIDKKLAAYIVQRME---RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + + ++A +I R++ R L A K + + +LA G + ++A V+++ Sbjct: 294 ELLDLNLPDEVAEFIANRLKTNIRQLEGAVKKLKALKHLA---GSQPSIAMAQSVIRD 348 >gi|261854631|ref|YP_003261914.1| chromosomal replication initiator protein DnaA [Halothiobacillus neapolitanus c2] gi|261835100|gb|ACX94867.1| chromosomal replication initiator protein DnaA [Halothiobacillus neapolitanus c2] Length = 469 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 40/232 (17%), Positives = 79/232 (34%), Gaps = 26/232 (11%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANI---------- 83 + D+ + + + A P + + G G GK+ L Sbjct: 137 KFNFDNFVEGKSNQLARAASQQVAQNPGVGYNPLFIYGGVGLGKTHLMQAVGNAILERSP 196 Query: 84 -------WSDKSRSTRFSNIAKSLDSILID---TRKPVLLEDIDLLDF---NDTQLFHII 130 S++ S+I + D + +L++DI + + FH Sbjct: 197 DAKVVYLHSERYVQQMVSSIKNNTIEEFKDFYRSVNALLIDDIQFFAGKPRSQEEFFHTF 256 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N++ + ++MT +P L SR V + PD + ++ Q Sbjct: 257 NALIEQGQQIIMTCDRYPKEIEGLEERLKSRFGWGLTVAVEPPDLETRVAILQSKAEQSQ 316 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 I + +A +I +R+ ++ E + ++ A G IT E LK+ Sbjct: 317 ISLSTDVAFFIAKRVRANIRELEGALRRVIATAQFTGRPITVESTKEALKDQ 368 >gi|285016822|ref|YP_003374533.1| chromosomal replication initiator protein DnaA [Xanthomonas albilineans GPE PC73] gi|283472040|emb|CBA14547.1| probable chromosomal replication initiator protein dnaa [Xanthomonas albilineans] Length = 445 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 47/258 (18%), Positives = 90/258 (34%), Gaps = 29/258 (11%) Query: 17 KNDQPKNKEEQLFFSFP--RCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILV 70 + + QL F + + + + AV+ ++L Sbjct: 90 DSTTARTPSPQLLEPFAGNLDSHYTFANFVEGRSNQLGLAAAVQAAQKPGDRAHNPLLLY 149 Query: 71 GPSGSGKSCLANIWSDKSRSTR-------------FSNIAKSLDSILIDT-------RKP 110 G +G GK+ L + R FS + ++L +D Sbjct: 150 GSTGLGKTHLMFAAGNAMREQNPNARVMYLRSEQFFSAMIRALQEKTMDQFKRQFQQVDA 209 Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 +L++DI D + FH N++ +++T +P P L SRL Sbjct: 210 LLIDDIQFFAGKDRTQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLS 269 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 V I PD + +++ +R I ++A I ++M ++ E ++ + A G Sbjct: 270 VAIDPPDFETRAAIVLAKARERGAEIPDEVAFLIAKKMRSNVRDLEGALNTLAARANFTG 329 Query: 228 MGITRSLAAEVLKETQQC 245 IT A E L++ + Sbjct: 330 RAITTEFAQETLRDLLRA 347 >gi|253573854|ref|ZP_04851196.1| chromosomal replication initiator protein DnaA [Paenibacillus sp. oral taxon 786 str. D14] gi|251846331|gb|EES74337.1| chromosomal replication initiator protein DnaA [Paenibacillus sp. oral taxon 786 str. D14] Length = 448 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 45/238 (18%), Positives = 88/238 (36%), Gaps = 36/238 (15%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI-------- 83 + D ++ S A + P+R + L G G GK+ L + Sbjct: 111 NPKYTFDTFVIGSGNRFAHAASLAVAEAPARAYNPLFLYGGVGLGKTHLMHAIGHYILEH 170 Query: 84 -------------WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLF 127 ++++ ++ N A+S + +L++DI L + + F Sbjct: 171 SPSSKVVYISSEKFTNEFINSIRDNRAESFRNKY-RNIDILLIDDIQFLAGKESTQEEFF 229 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++H+ +++++ P L SR + + I PD + ++ K Sbjct: 230 HTFNALHEERKQIIISSDRPPKEIPTLEERLRSRFEWGLITDIQPPDLETRIAILRKKAK 289 Query: 188 DRQIFIDKKLAAYIVQRME---RSLV-FAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I + YI +++ R L ++V +L IT LAAE LK+ Sbjct: 290 AENLDIPNEAMMYIANQIDTNIRELEGALIRVVA---YSSLINQ-DITTHLAAEALKD 343 >gi|269836034|ref|YP_003318262.1| chromosomal replication initiator protein DnaA [Sphaerobacter thermophilus DSM 20745] gi|269785297|gb|ACZ37440.1| chromosomal replication initiator protein DnaA [Sphaerobacter thermophilus DSM 20745] Length = 471 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 36/251 (14%), Positives = 92/251 (36%), Gaps = 30/251 (11%) Query: 25 EEQLFF----SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGK 77 +QL + +V S A + P+ + + G G GK Sbjct: 119 PQQLELTATPEHGLNPRYVFEKFVVGSNNRLAHAAALAVADRPADKFNPLYIYGGVGLGK 178 Query: 78 SCLANIWSDKSRST------RFSNIAKSLDSILID--------------TRKPVLLEDID 117 + L + ++ + R+ + + ++ T ++++DI Sbjct: 179 THLLHAIGHRALARSPELRIRYVSSETFTNELINAIRQQRTEDFRNRYRTIDILMIDDIQ 238 Query: 118 LLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 + + + FH N+++Q +++++ P + L SR + + I PD Sbjct: 239 FIAGKESTQEEFFHTFNALYQSGKQIVISSDRPPKAIPTLADRLRSRFEGGLLADIQPPD 298 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234 + ++ + + + + + Y+ +++E ++ E ++K+ L+ I+ L Sbjct: 299 LETRAAILAEKGRELGVTVPDDVLEYVARKVESNIRELEGALNKIIALSQLYHRPISMEL 358 Query: 235 AAEVLKETQQC 245 A E L ++ Sbjct: 359 AIEALTDSVGA 369 >gi|320532814|ref|ZP_08033591.1| replication initiator protein DnaA [Actinomyces sp. oral taxon 171 str. F0337] gi|320134965|gb|EFW27136.1| replication initiator protein DnaA [Actinomyces sp. oral taxon 171 str. F0337] Length = 533 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 41/238 (17%), Positives = 87/238 (36%), Gaps = 31/238 (13%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRS- 90 + D + S+ A + P+R + + G SG GK+ L + +++ Sbjct: 187 NPRYTFDTYVTGSSNRFAHATALAVAEAPARAYNPLFIYGGSGLGKTHLLHAIGHYAQTL 246 Query: 91 ------------TRFSNIAKSLDSILIDTRKP------------VLLEDIDLLDFNDTQL 126 S+ + D + +L++DI L ++ L Sbjct: 247 NPGIRVKYVNSEVFVSDFIACVRDGNQDDGRMEGFKRRYREVDILLVDDIQFLQGKESTL 306 Query: 127 ---FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 FH NS+H +++T+ P + G L SR + + + PD + ++ Sbjct: 307 EEFFHTFNSLHSSGKQVVLTSDQPPKALGGLDERLRSRFEWGLLADVQPPDLETRIAILS 366 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + + + + YI R+ ++ E + ++ A + ++LA VLK+ Sbjct: 367 RKGTAEGLDLPFDVLEYIASRITTNIRELEGALIRVTAFASLNKQPVDQTLAEMVLKD 424 >gi|295402123|ref|ZP_06812082.1| chromosomal replication initiator protein DnaA [Geobacillus thermoglucosidasius C56-YS93] gi|312109152|ref|YP_003987468.1| chromosomal replication initiator protein DnaA [Geobacillus sp. Y4.1MC1] gi|294975806|gb|EFG51425.1| chromosomal replication initiator protein DnaA [Geobacillus thermoglucosidasius C56-YS93] gi|311214253|gb|ADP72857.1| chromosomal replication initiator protein DnaA [Geobacillus sp. Y4.1MC1] Length = 450 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 47/269 (17%), Positives = 96/269 (35%), Gaps = 37/269 (13%) Query: 10 FFVPDKQKNDQ--------PKNKEEQLFFSFP---RCLGISRDDLLVHSAIEQAVRLIDS 58 F +P Q D + K + FP + D ++ S A + Sbjct: 78 FIIPPNQSEDDFELQQSLKKQRKSYEEPADFPQSMLNPKYTFDTFVIGSGNRFAHAASLA 137 Query: 59 WPSWPSRV---VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAK 98 P++ + + G G GK+ L + S+K + + I Sbjct: 138 VAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIEHNPSAKVVYLSSEKFTNEFINAIRD 197 Query: 99 SLDSILIDTRKPV---LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 + + + V L++DI L + + FH N++H+ +++++ P Sbjct: 198 NRPDDFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIP 257 Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 L SR + + I+ PD + ++ K I ++ YI +++ ++ Sbjct: 258 TLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKAEGFDIPNEVMLYIANQIDSNIREL 317 Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKE 241 E + ++ + I LAAE LK+ Sbjct: 318 EGALIRVVAYSSLINKEINADLAAEALKD 346 >gi|154503049|ref|ZP_02040109.1| hypothetical protein RUMGNA_00871 [Ruminococcus gnavus ATCC 29149] gi|153796290|gb|EDN78710.1| hypothetical protein RUMGNA_00871 [Ruminococcus gnavus ATCC 29149] Length = 456 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 44/281 (15%), Positives = 95/281 (33%), Gaps = 36/281 (12%) Query: 1 MNLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWP 60 ++ + +D+ + +K+ K + +F + D +V S A + Sbjct: 78 VSFVTDDH-VVIQEKKDTAVKKQQSNAIFEQANLNPKYTFDTFVVGSNNNFAHAASLAVA 136 Query: 61 SWPS---RVVILVGPSGSGKSCLANIWS-----------------DKSRSTRFSNIAKSL 100 P + L G G GK+ L + + + + + Sbjct: 137 DSPGEIYNPLFLYGGVGLGKTHLMHSIAHFILEKDPTKKVLYVTSETFTNELIDALKIGK 196 Query: 101 DSILID---------TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFP 148 + + +L++DI + + + FH N +H +++++ P Sbjct: 197 NGNELAMTTFREKYRNNDVLLIDDIQFIIGKESTQEEFFHTFNHLHVSGKQIIISSDKPP 256 Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI---FIDKKLAAYIVQRM 205 L +R + + IS PD + ++ K + I ++ YI + Sbjct: 257 KDIETLEARLRTRFEWGLIADISSPDYETRMAILRKKEELDGLERYHIPDEVMQYIANNI 316 Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 ++ E ++K+ LA I LAAE LK+ + Sbjct: 317 TSNIRELEGSLNKLIALANLENKPIDIPLAAEALKDMISPN 357 >gi|312903107|ref|ZP_07762288.1| replication initiator protein DnaA [Enterococcus faecalis TX0635] gi|310633498|gb|EFQ16781.1| replication initiator protein DnaA [Enterococcus faecalis TX0635] Length = 447 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 41/234 (17%), Positives = 84/234 (35%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS--- 88 + D ++ + A + P + G G GK+ L + + Sbjct: 112 NPKYTFDTFVIGKGNQMAHAAALVVAEDPGSIYNPLFFYGGVGLGKTHLMHAIGHQMLVN 171 Query: 89 --RSTRFSNIAKSLDSILIDTR---------------KPVLLEDIDLLDFNDTQL---FH 128 + +++ + I++ +L++DI L + L FH Sbjct: 172 QPDAKVKYVSSETFTNEFINSIQTKTSEQFRKEYRNVDLLLVDDIQFLAEKEATLEEFFH 231 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N ++ + +++T+ P L SR V I+ PD + ++ K Sbjct: 232 TFNDLYNENKQIVLTSDRPPNDIPKLPERLVSRFAWGLSVDITPPDLETRIAILRKKADA 291 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ I +YI +++ ++ E + ++ A G IT SLAA+ LK Sbjct: 292 ERLEIPDDTLSYIAGQIDSNIRELEGALVRVQAFATINGEDITTSLAADALKSL 345 >gi|153952671|ref|YP_001393436.1| chromosomal replication initiation protein [Clostridium kluyveri DSM 555] gi|219853344|ref|YP_002470466.1| chromosomal replication initiator protein dnaA [Clostridium kluyveri NBRC 12016] gi|189044635|sp|A5N457|DNAA_CLOK5 RecName: Full=Chromosomal replication initiator protein DnaA gi|254777896|sp|B9DXS7|DNAA_CLOK1 RecName: Full=Chromosomal replication initiator protein DnaA gi|146345552|gb|EDK32088.1| DnaA [Clostridium kluyveri DSM 555] gi|219567068|dbj|BAH05052.1| chromosomal replication initiator protein dnaA [Clostridium kluyveri NBRC 12016] Length = 451 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 35/233 (15%), Positives = 88/233 (37%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW------- 84 + ++ ++ A + P+ + + G G GK+ L + Sbjct: 115 NPKYTFTSFVIGNSNRFAHAASLAVAESPAKAYNPLFIYGGVGLGKTHLMHAIGHHILHN 174 Query: 85 ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128 S+K + ++I + + + L++DI + + + FH Sbjct: 175 NTSCKVVYVSSEKFTNELINSIKDDKNVEFRSKYRNIDVLLIDDIQFIAGKERTQEEFFH 234 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++++ + +++++ P L SR + + I PD + ++ K Sbjct: 235 TFNALYEANKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQPPDFETRMAILKKKADV 294 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++ I ++ AYI +++ ++ E + ++ + I+ LA E LK+ Sbjct: 295 EKLNIPNEVMAYIATKIKSNIRELEGALIRIVAFSSLTNKEISVDLAIEALKD 347 >gi|138893680|ref|YP_001124133.1| chromosomal replication initiation protein [Geobacillus thermodenitrificans NG80-2] gi|166201885|sp|A4IJ84|DNAA_GEOTN RecName: Full=Chromosomal replication initiator protein DnaA gi|134265193|gb|ABO65388.1| DnaA [Geobacillus thermodenitrificans NG80-2] Length = 450 Score = 116 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 47/269 (17%), Positives = 98/269 (36%), Gaps = 37/269 (13%) Query: 10 FFVPDKQ--------KNDQPKNKEEQLFFSFP---RCLGISRDDLLVHSAIEQAVRLIDS 58 F +P Q + + + K + FP + D ++ S A + Sbjct: 78 FIIPPNQADEKLELPSSAKKQRKPYEEANDFPQSMLNPKYTFDTFVIGSGNRFAHAASLA 137 Query: 59 WPSWPSRV---VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAK 98 P++ + + G G GK+ L + S+K + + I Sbjct: 138 VAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIEHNPSAKVVYLSSEKFTNEFINAIRD 197 Query: 99 SLDSILIDTRKPV---LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 + + + V L++DI L + + FH N++H+ +++++ P Sbjct: 198 NRPDDFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIP 257 Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 L SR + + I+ PD + ++ K I ++ YI +++ ++ Sbjct: 258 TLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKAEGFDIPNEVMLYIANQIDSNIREL 317 Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKE 241 E + ++ + IT LAAE LK+ Sbjct: 318 EGALIRVVAYSSLINKEITADLAAEALKD 346 >gi|307719922|ref|YP_003891062.1| chromosomal replication initiator protein DnaA [Sulfurimonas autotrophica DSM 16294] gi|306978015|gb|ADN08050.1| chromosomal replication initiator protein DnaA [Sulfurimonas autotrophica DSM 16294] Length = 435 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 88/234 (37%), Gaps = 24/234 (10%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN----IWSDK 87 S D+ +V + + A + S +V + + G G GK+ L ++ ++ Sbjct: 101 NPSHSFDNFMVGGSNQFAYAAVKSVSENAGKVYNPLFIYGGVGLGKTHLMQAAGNVFQNE 160 Query: 88 SRSTRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDFND---TQLFHII 130 + ++ + + L+ + R +L++DI L + + FH Sbjct: 161 GKVVIYTTVEQFLNDFIRHVRNKTMERFQEKYRKCDVLLIDDIQFLSNKEGIQEEFFHTF 220 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 ++ +++TA P G L SR + V I P+ + +I K + Sbjct: 221 EALKGAGKQIILTADKHPKKIGGLEARLQSRFEWGLVADIQPPELETKIAIIKKKCEINK 280 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 + + + + YI ++ ++ E ++ K+ + + I VLK+ Sbjct: 281 VKLSEDIVNYIATVIDSNVREIEGILSKLHAYSQLMHVDIDLDFTKNVLKDQMN 334 >gi|212637850|ref|YP_002314370.1| chromosomal replication initiation protein [Anoxybacillus flavithermus WK1] gi|226735773|sp|B7GFK8|DNAA_ANOFW RecName: Full=Chromosomal replication initiator protein DnaA gi|212559330|gb|ACJ32385.1| DNA replication initiation ATPase [Anoxybacillus flavithermus WK1] Length = 447 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 43/252 (17%), Positives = 94/252 (37%), Gaps = 30/252 (11%) Query: 16 QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGP 72 +K+D + + Q + + D ++ S A + P++ + + G Sbjct: 98 RKHDDEQTEFPQSMLN----PKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGG 153 Query: 73 SGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTRKPV---L 112 G GK+ L + S+K + + I + + + V L Sbjct: 154 VGLGKTHLMHAIGHYVLEHNPSAKVVYLSSEKFTNEFINAIRDNRPDDFRNKYRNVDVLL 213 Query: 113 LEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 ++DI L + + FH N++H+ +++++ P L SR + + Sbjct: 214 IDDIQFLAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITD 273 Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229 I+ PD + ++ K I ++ YI +++ ++ E + ++ + Sbjct: 274 ITPPDLETRIAILRKKAKAEGFDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKE 333 Query: 230 ITRSLAAEVLKE 241 I LAAE LK+ Sbjct: 334 INADLAAEALKD 345 >gi|152991598|ref|YP_001357319.1| chromosomal replication initiation protein [Sulfurovum sp. NBC37-1] gi|151423459|dbj|BAF70962.1| chromosome replication initiator protein DnaA [Sulfurovum sp. NBC37-1] Length = 442 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 43/254 (16%), Positives = 94/254 (37%), Gaps = 27/254 (10%) Query: 16 QKNDQP---KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VIL 69 +K +P ++ E+Q S ++ + +V + + A S P ++ + L Sbjct: 83 EKTSKPVVKQSNEKQHSKSTYLNPSLTFESFIVGPSNQFAYTTAKSVAEKPGQIYNPLFL 142 Query: 70 VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------------PV 111 G G GK+ L + + + I +L+ + + Sbjct: 143 YGGVGLGKTHLLQAIGNYHIALGKTVIYTTLEQFMNSFTSHLRSQTMDRFREKFRECDLL 202 Query: 112 LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168 L++DI L + + FH N ++ + +++T+ P + L SR + + Sbjct: 203 LIDDIQFLSRKEQTQEEFFHTFNELYNTNKQIVITSDRQPNKIAGLVDRLRSRFEWGLMA 262 Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228 I P + +I K I ++ ++ +I M ++ E + K++ L+ Sbjct: 263 DIQPPGLETKIAIIQKKCELDGIRLNHEIINFIATNMGDNIREIEGTIIKLNALSSMLNQ 322 Query: 229 GITRSLAAEVLKET 242 IT A +K+ Sbjct: 323 DITLDFAQNAIKDQ 336 >gi|315170513|gb|EFU14530.1| replication initiator protein DnaA [Enterococcus faecalis TX1342] Length = 447 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 41/234 (17%), Positives = 84/234 (35%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS--- 88 + D ++ + A + P + G G GK+ L + + Sbjct: 112 NPKYTFDTFVIGKGNQMAHAAALVVAEDPGSIYNPLFFYGGVGLGKTHLMHAIGHQMLVN 171 Query: 89 --RSTRFSNIAKSLDSILIDTR---------------KPVLLEDIDLLDFNDTQL---FH 128 + +++ + I++ +L++DI L + L FH Sbjct: 172 QPDAKVKYVSSETFTNEFINSIQTKTSEQFRKEYRNVDLLLVDDIQFLAEKEATLEEFFH 231 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N ++ + +++T+ P L SR V I+ PD + ++ K Sbjct: 232 TFNDLYNENKQIVLTSDRPPNDIPKLPERLVSRFAWGLSVDITPPDLETRIAILRKKADA 291 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ I +YI +++ ++ E + ++ A G IT SLAA+ LK Sbjct: 292 ERLEIPDDTLSYIAGQIDSNIRELEGALVRVQAFATINGEDITTSLAADALKSL 345 >gi|34556459|ref|NP_906274.1| chromosomal replication initiation protein [Wolinella succinogenes DSM 1740] gi|61212685|sp|Q7MSY2|DNAA_WOLSU RecName: Full=Chromosomal replication initiator protein DnaA gi|34482173|emb|CAE09174.1| dnaA, probable chromosomal replication initiator protein [Wolinella succinogenes] Length = 437 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 86/232 (37%), Gaps = 24/232 (10%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91 + D +V ++ A + + +++ G +G GK+ L N + + + Sbjct: 103 NPSFTFDSFVVGNSNRFAYEVSQNVAKKQGIAYNPLLIYGGTGLGKTHLLNSIGNYNVAK 162 Query: 92 RFSNIAKSLDSILID------------------TRKPVLLEDIDLLDFN---DTQLFHII 130 S I + + L D +L++D+ + FH Sbjct: 163 GKSVIYVTSEQFLNDYLYHIRNNTMDRFRDKYRACDYLLIDDVQFFGGKPQIQEEFFHTF 222 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N +H + +++T+ P L SR + V I P+ + +I K Sbjct: 223 NELHNKNKQIVLTSDKTPKQIAGLEERLKSRFEWGMVSDIQPPELETKINIIKKKCEFDG 282 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 I++ ++ +YI M+ ++ E ++ K++ A IT A VLKE Sbjct: 283 IYLSNEIISYIATNMDNNIREIEGIIIKLNAYANLMNQEITLQFAKNVLKEQ 334 >gi|322381372|ref|ZP_08055375.1| chromosomal replication initiation-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154948|gb|EFX47219.1| chromosomal replication initiation-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 441 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 43/237 (18%), Positives = 85/237 (35%), Gaps = 34/237 (14%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD----- 86 + D ++ A + P++ + L G G GK+ L + Sbjct: 104 NSRYTFDTFVIGQGNRFAHAASLAVAEAPAKAYNPLFLYGGVGLGKTHLMHAIGHYVLEH 163 Query: 87 --KSRSTRFSNIAKSLDSILI-------------DTRKPVLLEDIDLLDFND---TQLFH 128 ++R S+ + + I T +L++DI + + + FH Sbjct: 164 NPEARVLYISSEKFTNEFINAVRDNRGEDFRNKYRTIDVLLIDDIQFISGKEGTQEEFFH 223 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H+ +++++ P L SR + + I PD + ++ K Sbjct: 224 TFNALHEEGKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDIQPPDLETRIAILRKKAKA 283 Query: 189 RQIFIDKKLAAYIVQRME---RSLV-FAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I + YI +++ R L ++V +L IT LAAE LK+ Sbjct: 284 ENLEIPNEAMLYIANQIDTNIRELEGALIRVVA---YSSLINQ-DITTHLAAEALKD 336 >gi|167461551|ref|ZP_02326640.1| chromosomal replication initiation protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 452 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 43/237 (18%), Positives = 85/237 (35%), Gaps = 34/237 (14%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD----- 86 + D ++ A + P++ + L G G GK+ L + Sbjct: 115 NSRYTFDTFVIGQGNRFAHAASLAVAEAPAKAYNPLFLYGGVGLGKTHLMHAIGHYVLEH 174 Query: 87 --KSRSTRFSNIAKSLDSILI-------------DTRKPVLLEDIDLLDFND---TQLFH 128 ++R S+ + + I T +L++DI + + + FH Sbjct: 175 NPEARVLYISSEKFTNEFINAVRDNRGEDFRNKYRTIDVLLIDDIQFISGKEGTQEEFFH 234 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H+ +++++ P L SR + + I PD + ++ K Sbjct: 235 TFNALHEEGKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDIQPPDLETRIAILRKKAKA 294 Query: 189 RQIFIDKKLAAYIVQRME---RSLV-FAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I + YI +++ R L ++V +L IT LAAE LK+ Sbjct: 295 ENLEIPNEAMLYIANQIDTNIRELEGALIRVVA---YSSLINQ-DITTHLAAEALKD 347 >gi|282856283|ref|ZP_06265564.1| chromosomal replication initiator protein DnaA [Pyramidobacter piscolens W5455] gi|282585860|gb|EFB91147.1| chromosomal replication initiator protein DnaA [Pyramidobacter piscolens W5455] Length = 438 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 41/258 (15%), Positives = 86/258 (33%), Gaps = 34/258 (13%) Query: 19 DQPKNKEEQLFFSFPRCL--------GISRDDLLVHSAIEQAVRL---IDSWPSWPSRVV 67 +P EE L P +V + A + P + Sbjct: 81 SKPVGAEEALPSPQPHSPIGSNGLNRQYDFTSFVVGKSNRLAHAASLAVAESPGEAYNPL 140 Query: 68 ILVGPSGSGKSCLANIWSDKSRS-----------------TRFSNIAKSLDSILIDTRKP 110 + G G GK+ L + + ++ + I + + + Sbjct: 141 FIWGGVGLGKTHLMHAIGNYAQGKNGNTKVTYLSSEKFTNELITAIKNARTAEFRAKYRH 200 Query: 111 V---LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164 V L++DI L + + FH N +H +++++ P G + SR + Sbjct: 201 VDILLIDDIQFLAGKESTQDEFFHTFNDLHTEHKQIVLSSDRPPKELGDIEDRIISRFEW 260 Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 V I PD + ++ K R+I ++ + ++ + + ++ E ++++ A Sbjct: 261 GLVTDIQQPDYETRIAILKKKAEQRRIPVNDDVIGFLAENIPSNIRELEGALNRVIASAN 320 Query: 225 SRGMGITRSLAAEVLKET 242 IT E LK+ Sbjct: 321 FSQEPITIENTQEWLKDV 338 >gi|326772843|ref|ZP_08232127.1| DNA-directed DNA replication initiator protein [Actinomyces viscosus C505] gi|326637475|gb|EGE38377.1| DNA-directed DNA replication initiator protein [Actinomyces viscosus C505] Length = 601 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 41/238 (17%), Positives = 87/238 (36%), Gaps = 31/238 (13%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRS- 90 + D + S+ A + P+R + + G SG GK+ L + +++ Sbjct: 255 NPRYTFDTYVTGSSNRFAHATALAVAEAPARAYNPLFIYGGSGLGKTHLLHAIGHYAQTL 314 Query: 91 ------------TRFSNIAKSLDSILIDTRKP------------VLLEDIDLLDFNDTQL 126 S+ + D + +L++DI L ++ L Sbjct: 315 NPGIRVKYVNSEVFVSDFIACVRDGNQDDGRMEGFKRRYREVDILLVDDIQFLQGKESTL 374 Query: 127 ---FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 FH NS+H +++T+ P + G L SR + + + PD + ++ Sbjct: 375 EEFFHTFNSLHSSGKQVVLTSDQPPKALGGLDERLRSRFEWGLLADVQPPDLETRIAILS 434 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + + + + YI R+ ++ E + ++ A + ++LA VLK+ Sbjct: 435 RKGTAEGLDLPFDVLEYIASRITTNIRELEGALIRVTAFASLNKQPVDQTLAEMVLKD 492 >gi|307825356|ref|ZP_07655575.1| chromosomal replication initiator protein DnaA [Methylobacter tundripaludum SV96] gi|307733531|gb|EFO04389.1| chromosomal replication initiator protein DnaA [Methylobacter tundripaludum SV96] Length = 438 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 82/233 (35%), Gaps = 28/233 (12%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRF 93 + D+ + + + A + +++ G SG GK+ + + + Sbjct: 106 AFTFDNFVEGKSNQLARAASMQVSENIGKAYNPLLIYGSSGLGKTHMMHAIGNAVLQKNP 165 Query: 94 SNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFND---TQLFHII 130 S L S +L++DI + + FH Sbjct: 166 SATVVYLHSEKFVQDMVKALQQNSINAFKEFYRGVDVLLIDDIQFFAGKERSQEEFFHTF 225 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N++ + +++T +P + L D L SR V I PD + +++K A Sbjct: 226 NTLLEKKHQVILTCDKYPKEI-IGLEDRLKSRFGWGLPVLIEPPDMETRAAILMKKAALV 284 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 I + + +A +I +R+ ++ E + ++ A G IT E L + Sbjct: 285 NIELAQDVAFFIAKRIPSNVRDLEGALRRVIANAQFTGREITIEFTKEALHDL 337 >gi|197120422|ref|YP_002132373.1| chromosomal replication initiator protein DnaA [Anaeromyxobacter sp. K] gi|196170271|gb|ACG71244.1| chromosomal replication initiator protein DnaA [Anaeromyxobacter sp. K] Length = 458 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 88/236 (37%), Gaps = 25/236 (10%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWS----DK 87 + D +V ++ A + + P R + L G SG GK+ L + + +K Sbjct: 125 NPRYAFDTFVVGASNHFAFAAAQAVAANPGRTWNPLFLHGDSGLGKTHLLHAVAHAILEK 184 Query: 88 SRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHI 129 S ++ + + +L++D+ L D + FH Sbjct: 185 SGGRVAIVSSERYTNDFVAALSKGTMDEFRRKYRECSALLVDDVQFLAGKDKTAEEFFHT 244 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N +H + +++++ P LCSR + V+I +P+ + ++ K Sbjct: 245 FNELHDHHVQIVLSSDRSPKELKGLDERLCSRFEWGMRVQIEVPEFETRAAILQKKADVE 304 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 +I + + + Q + ++ E + ++ A + IT LA +VL + Sbjct: 305 KIDLPDDVTQLLAQHIRSNVRELEGALMRLAAFASLKSEPITVPLARDVLADVIPP 360 >gi|220915124|ref|YP_002490428.1| chromosomal replication initiator protein DnaA [Anaeromyxobacter dehalogenans 2CP-1] gi|219952978|gb|ACL63362.1| chromosomal replication initiator protein DnaA [Anaeromyxobacter dehalogenans 2CP-1] Length = 458 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 88/236 (37%), Gaps = 25/236 (10%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWS----DK 87 + D +V ++ A + + P R + L G SG GK+ L + + +K Sbjct: 125 NPRYAFDTFVVGASNHFAFAAAQAVAANPGRTWNPLFLHGDSGLGKTHLLHAVAHAILEK 184 Query: 88 SRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHI 129 S ++ + + +L++D+ L D + FH Sbjct: 185 SGGRVAIVSSERYTNDFVAALSKGTMDEFRRKYRECSALLVDDVQFLAGKDKTAEEFFHT 244 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N +H + +++++ P LCSR + V+I +P+ + ++ K Sbjct: 245 FNELHDHHVQIVLSSDRSPKELKGLDERLCSRFEWGMRVQIEVPEFETRAAILQKKADVE 304 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 +I + + + Q + ++ E + ++ A + IT LA +VL + Sbjct: 305 KIDLPDDVTQLLAQHIRSNVRELEGALMRLAAFASLKSEPITVPLARDVLADVIPP 360 >gi|77358983|ref|YP_338558.1| DNA replication initiator [Pseudoalteromonas haloplanktis TAC125] gi|76873894|emb|CAI85115.1| DNA replication initiator protein, transcriptional regulator of replication and other genes; binds DNA at DnaA boxes, binds cardiolipin and other acidic phospholipids, binds ATP [Pseudoalteromonas haloplanktis TAC125] Length = 474 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 88/234 (37%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLAN-----IWSD 86 + D + + + A P V + G +G GK+ L + I ++ Sbjct: 140 KENYTFDSFVEGKSNQLAKAAATQVADNPGAAFNPVFIYGGTGLGKTHLLHAVGNGILAN 199 Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128 K + ++ ++ + +E+ +D L +D + FH Sbjct: 200 KPDAKIVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALMIDDIQFFANKERSQEEFFH 259 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++ + + +++T+ +P L SR + I P+ + +++K Sbjct: 260 TFNALLEGNQQIILTSDRYPKEIEGVEDRLKSRFGWGLTIAIEPPELETRVAILMKKAQQ 319 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +I + ++A +I +++ ++ E ++++ A G I+ E L++ Sbjct: 320 SKINLPHEVAFFIAKKLRSNVRELEGALNRVIANANFTGRPISIDFVKEALRDL 373 >gi|148262086|ref|YP_001228792.1| chromosomal replication initiation protein [Geobacter uraniireducens Rf4] gi|189044596|sp|A5GDX1|DNAA_GEOUR RecName: Full=Chromosomal replication initiator protein DnaA gi|146395586|gb|ABQ24219.1| chromosomal replication initiator protein DnaA [Geobacter uraniireducens Rf4] Length = 449 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 41/257 (15%), Positives = 98/257 (38%), Gaps = 26/257 (10%) Query: 11 FVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP---SRVV 67 F P + N+ K + + + + D + ++ + A + S P + Sbjct: 91 FTPVIKDNEPSKETNKNIDITANLNPKYTFDSFVCGASNQFAHAASQAVASNPASNYNPL 150 Query: 68 ILVGPSGSGKSCLA-----NIWSDKSRSTRFSNIAKSLDSILID---------------T 107 + G G GK+ L +I + ++ ++ + +I+ Sbjct: 151 FIYGGVGLGKTHLLIAIGNHIKENNKKAKICYYSSEKFMNEMINCLRYKKMDEFRNKFRK 210 Query: 108 RKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164 +L++DI + + + FH N++++ +++T+ FP L SR + Sbjct: 211 MDILLIDDIQFMAGKEATQEEFFHTFNALYESHKQIVVTSDKFPKDIPGLEERLRSRFEW 270 Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 + I PD + ++ K I + +A ++ ++ E ++ ++ A Sbjct: 271 GLIADIQPPDIETKIAILKKKSDLNSITLPNDVALFLASSATSNVRELEGMLIRLGAYAS 330 Query: 225 SRGMGITRSLAAEVLKE 241 G IT ++A ++LK+ Sbjct: 331 LTGSEITLNMARDILKD 347 >gi|254495524|ref|ZP_05108448.1| chromosomal replication initiator protein DnaA [Polaribacter sp. MED152] gi|85819880|gb|EAQ41037.1| chromosomal replication initiator protein DnaA [Polaribacter sp. MED152] Length = 475 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 42/259 (16%), Positives = 91/259 (35%), Gaps = 37/259 (14%) Query: 10 FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66 F +P QK E QL S + + + A + + P Sbjct: 125 FIIPGLQKV----KIESQL------NPNYSFANFVEGDSNRLARSAGMAVANKPGGTSFN 174 Query: 67 -VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTR 108 +++ G G GK+ L++ S+K ++ + + I Sbjct: 175 PLLIYGGVGLGKTHLSHAIGVDIKDKYPDKTVLYISSEKFTQQFIDSVKSNTRNDFIHFY 234 Query: 109 ---KPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 ++++D+ L FHI N +HQ +++T+ PV L SR Sbjct: 235 QMIDVLIIDDVQFLSGKAGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSRF 294 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 K ++ PD + ++ + + +++ YI + ++ ++ E ++ M Sbjct: 295 KWGLSAELQAPDYETRISILQNKLFRDGVEMPEEIIEYIAKNIKSNVRELEGVIISMIAQ 354 Query: 223 ALSRGMGITRSLAAEVLKE 241 A + LA +++ + Sbjct: 355 ASFNRREFSIELAKQIVDK 373 >gi|86156431|ref|YP_463216.1| chromosomal replication initiator protein DnaA [Anaeromyxobacter dehalogenans 2CP-C] gi|85772942|gb|ABC79779.1| chromosomal replication initiator protein DnaA [Anaeromyxobacter dehalogenans 2CP-C] Length = 457 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 89/236 (37%), Gaps = 25/236 (10%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDK---- 87 + D +V ++ A + + P R + L G SG GK+ L + + Sbjct: 124 NPRYAFDTFVVGASNHFAFAAAQAVAANPGRTWNPLFLHGDSGLGKTHLLHAVAHAILEK 183 Query: 88 --SRSTRFSNIAKSLDSILIDTRK-------------PVLLEDIDLLDFND---TQLFHI 129 R S+ + D + +R +L++D+ L D + FH Sbjct: 184 SGGRVAIVSSERYTNDFVAALSRGTMDEFRRKYRECSALLVDDVQFLAGKDKTAEEFFHT 243 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N +H + +++++ P LCSR + V+I +P+ + ++ K Sbjct: 244 FNELHDHHVQIVLSSDRSPKELKGLDERLCSRFEWGMRVQIEVPEFETRAAILQKKADVE 303 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 +I + + + Q + ++ E + ++ A + IT LA +VL + Sbjct: 304 KIDLPDDVTQLLAQHIRSNVRELEGALMRLAAFASLKSEPITVPLARDVLSDVIPP 359 >gi|299541765|ref|ZP_07052088.1| chromosomal replication initiation protein [Lysinibacillus fusiformis ZC1] gi|298725503|gb|EFI66144.1| chromosomal replication initiation protein [Lysinibacillus fusiformis ZC1] Length = 449 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 87/233 (37%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW-----SD 86 + D ++ S A + P++ + G G GK+ L + Sbjct: 114 NPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPFFIYGGVGLGKTHLMHAIGHYVLEH 173 Query: 87 KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 + ++ + I++ + +L++DI L + + FH Sbjct: 174 NPNAKVVYLSSEKFTNEFINSIRDNKALDFRNKYRNVDVLLIDDIQFLAGKESTQEEFFH 233 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H+ +++++ P L SR + + I+ PD + ++ K Sbjct: 234 TFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDIAPPDLETRIAILRKKAKA 293 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + + ++ YI +++ ++ E + ++ + IT +LAAE LK+ Sbjct: 294 DGLEVPNEVMLYIANQIDSNIRELEGALIRVVAYSSLVNKDITATLAAEALKD 346 >gi|315453775|ref|YP_004074045.1| chromosomal replication initiator protein [Helicobacter felis ATCC 49179] gi|315132827|emb|CBY83455.1| chromosomal replication initiator protein [Helicobacter felis ATCC 49179] Length = 431 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 45/265 (16%), Positives = 100/265 (37%), Gaps = 26/265 (9%) Query: 6 EDYSFFVPDKQKNDQPKNKEEQLFF---SFPRCLGISRDDLLVHSAIEQAVRLID--SWP 60 + Y V + K+ Q + L + D L+V + + AV++ + Sbjct: 66 KGYKVQVQVRPKSQQQTTPPKPLMVAKNNPTLNPVFRFDTLVVGACNQMAVKIATQVARQ 125 Query: 61 SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID-------------- 106 S V+ G G GK+ L N + + S + + + L D Sbjct: 126 SGVYNPVLFFGGVGLGKTHLLNAIGNHACDQLKSVLYVTAEQFLNDYVSGLNSRSMDKFQ 185 Query: 107 ----TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC 159 + +L++D+ + + FH N++H + +++T+ P L Sbjct: 186 EKYRSCDYLLIDDVQFFAGKEKVQEEFFHTFNALHAQNKQIVITSDKPPKDIKGLAERLL 245 Query: 160 SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 SR + + + P + +I + A QI + +++ Y+ + ++ E + ++ Sbjct: 246 SRFEMGMLASVHPPTLETKLAIIEQKCAQDQIELPQEVLHYLASHLNENIRQIEGTLLRL 305 Query: 220 DNLALSRGMGITRSLAAEVLKETQQ 244 + A I+ +A V++ET + Sbjct: 306 NATATLSHQPISLQMAQSVVQETCK 330 >gi|29374662|ref|NP_813814.1| chromosomal replication initiation protein [Enterococcus faecalis V583] gi|227518108|ref|ZP_03948157.1| chromosomal replication initiator protein DnaA [Enterococcus faecalis TX0104] gi|227555685|ref|ZP_03985732.1| chromosomal replication initiator protein DnaA [Enterococcus faecalis HH22] gi|229547129|ref|ZP_04435854.1| chromosomal replication initiator protein DnaA [Enterococcus faecalis TX1322] gi|229550699|ref|ZP_04439424.1| chromosomal replication initiator protein DnaA [Enterococcus faecalis ATCC 29200] gi|255971549|ref|ZP_05422135.1| chromosomal replication initiator protein [Enterococcus faecalis T1] gi|255974522|ref|ZP_05425108.1| chromosomal replication initiator protein [Enterococcus faecalis T2] gi|256618527|ref|ZP_05475373.1| chromosomal replication initiator protein [Enterococcus faecalis ATCC 4200] gi|256761854|ref|ZP_05502434.1| chromosomal replication initiator protein [Enterococcus faecalis T3] gi|256854981|ref|ZP_05560342.1| chromosomal replication initiator protein dnaA [Enterococcus faecalis T8] gi|256957015|ref|ZP_05561186.1| chromosomal replication initiator protein [Enterococcus faecalis DS5] gi|256960824|ref|ZP_05564995.1| chromosomal replication initiator protein [Enterococcus faecalis Merz96] gi|256963983|ref|ZP_05568154.1| chromosomal replication initiator protein [Enterococcus faecalis HIP11704] gi|257078692|ref|ZP_05573053.1| chromosomal replication initiator protein [Enterococcus faecalis JH1] gi|257081347|ref|ZP_05575708.1| chromosomal replication initiator protein DnaA [Enterococcus faecalis E1Sol] gi|257084004|ref|ZP_05578365.1| chromosomal replication initiator protein [Enterococcus faecalis Fly1] gi|257087834|ref|ZP_05582195.1| chromosomal replication initiator protein [Enterococcus faecalis D6] gi|257088486|ref|ZP_05582847.1| chromosomal replication initiator protein dnaA [Enterococcus faecalis CH188] gi|257417426|ref|ZP_05594420.1| chromosomal replication initiator protein [Enterococcus faecalis AR01/DG] gi|257418842|ref|ZP_05595836.1| chromosomal replication initiator protein [Enterococcus faecalis T11] gi|257421343|ref|ZP_05598333.1| chromosomal replication initiator protein dnaA [Enterococcus faecalis X98] gi|293382662|ref|ZP_06628590.1| ATPase [Enterococcus faecalis R712] gi|293387926|ref|ZP_06632462.1| ATPase [Enterococcus faecalis S613] gi|294781248|ref|ZP_06746595.1| chromosomal replication initiator protein DnaA [Enterococcus faecalis PC1.1] gi|300861740|ref|ZP_07107820.1| chromosomal replication initiator protein DnaA [Enterococcus faecalis TUSoD Ef11] gi|307268916|ref|ZP_07550280.1| replication initiator protein DnaA [Enterococcus faecalis TX4248] gi|307274012|ref|ZP_07555222.1| replication initiator protein DnaA [Enterococcus faecalis TX0855] gi|307276499|ref|ZP_07557619.1| replication initiator protein DnaA [Enterococcus faecalis TX2134] gi|307284059|ref|ZP_07564229.1| replication initiator protein DnaA [Enterococcus faecalis TX0860] gi|307287182|ref|ZP_07567253.1| replication initiator protein DnaA [Enterococcus faecalis TX0109] gi|307296590|ref|ZP_07576410.1| replication initiator protein DnaA [Enterococcus faecalis TX0411] gi|312908814|ref|ZP_07767753.1| replication initiator protein DnaA [Enterococcus faecalis DAPTO 512] gi|312951720|ref|ZP_07770614.1| replication initiator protein DnaA [Enterococcus faecalis TX0102] gi|312979544|ref|ZP_07791226.1| chromosomal replication initiator protein DnaA [Enterococcus faecalis DAPTO 516] gi|38257441|sp|Q839Z5|DNAA_ENTFA RecName: Full=Chromosomal replication initiator protein DnaA gi|29342120|gb|AAO79886.1| chromosomal replication initiator protein DnaA [Enterococcus faecalis V583] gi|227074442|gb|EEI12405.1| chromosomal replication initiator protein DnaA [Enterococcus faecalis TX0104] gi|227175195|gb|EEI56167.1| chromosomal replication initiator protein DnaA [Enterococcus faecalis HH22] gi|229304132|gb|EEN70128.1| chromosomal replication initiator protein DnaA [Enterococcus faecalis ATCC 29200] gi|229307711|gb|EEN73698.1| chromosomal replication initiator protein DnaA [Enterococcus faecalis TX1322] gi|255962567|gb|EET95043.1| chromosomal replication initiator protein [Enterococcus faecalis T1] gi|255967394|gb|EET98016.1| chromosomal replication initiator protein [Enterococcus faecalis T2] gi|256598054|gb|EEU17230.1| chromosomal replication initiator protein [Enterococcus faecalis ATCC 4200] gi|256683105|gb|EEU22800.1| chromosomal replication initiator protein [Enterococcus faecalis T3] gi|256709494|gb|EEU24541.1| chromosomal replication initiator protein dnaA [Enterococcus faecalis T8] gi|256947511|gb|EEU64143.1| chromosomal replication initiator protein [Enterococcus faecalis DS5] gi|256951320|gb|EEU67952.1| chromosomal replication initiator protein [Enterococcus faecalis Merz96] gi|256954479|gb|EEU71111.1| chromosomal replication initiator protein [Enterococcus faecalis HIP11704] gi|256986722|gb|EEU74024.1| chromosomal replication initiator protein [Enterococcus faecalis JH1] gi|256989377|gb|EEU76679.1| chromosomal replication initiator protein DnaA [Enterococcus faecalis E1Sol] gi|256992034|gb|EEU79336.1| chromosomal replication initiator protein [Enterococcus faecalis Fly1] gi|256995864|gb|EEU83166.1| chromosomal replication initiator protein [Enterococcus faecalis D6] gi|256997298|gb|EEU83818.1| chromosomal replication initiator protein dnaA [Enterococcus faecalis CH188] gi|257159254|gb|EEU89214.1| chromosomal replication initiator protein [Enterococcus faecalis ARO1/DG] gi|257160670|gb|EEU90630.1| chromosomal replication initiator protein [Enterococcus faecalis T11] gi|257163167|gb|EEU93127.1| chromosomal replication initiator protein dnaA [Enterococcus faecalis X98] gi|291079968|gb|EFE17332.1| ATPase [Enterococcus faecalis R712] gi|291082663|gb|EFE19626.1| ATPase [Enterococcus faecalis S613] gi|294451711|gb|EFG20166.1| chromosomal replication initiator protein DnaA [Enterococcus faecalis PC1.1] gi|295112341|emb|CBL30978.1| chromosomal replication initiator protein DnaA [Enterococcus sp. 7L76] gi|300848265|gb|EFK76022.1| chromosomal replication initiator protein DnaA [Enterococcus faecalis TUSoD Ef11] gi|306495926|gb|EFM65514.1| replication initiator protein DnaA [Enterococcus faecalis TX0411] gi|306501780|gb|EFM71071.1| replication initiator protein DnaA [Enterococcus faecalis TX0109] gi|306503430|gb|EFM72679.1| replication initiator protein DnaA [Enterococcus faecalis TX0860] gi|306506826|gb|EFM75976.1| replication initiator protein DnaA [Enterococcus faecalis TX2134] gi|306509320|gb|EFM78380.1| replication initiator protein DnaA [Enterococcus faecalis TX0855] gi|306514724|gb|EFM83275.1| replication initiator protein DnaA [Enterococcus faecalis TX4248] gi|310625252|gb|EFQ08535.1| replication initiator protein DnaA [Enterococcus faecalis DAPTO 512] gi|310630293|gb|EFQ13576.1| replication initiator protein DnaA [Enterococcus faecalis TX0102] gi|311287726|gb|EFQ66282.1| chromosomal replication initiator protein DnaA [Enterococcus faecalis DAPTO 516] gi|315026677|gb|EFT38609.1| replication initiator protein DnaA [Enterococcus faecalis TX2137] gi|315030122|gb|EFT42054.1| replication initiator protein DnaA [Enterococcus faecalis TX4000] gi|315033557|gb|EFT45489.1| replication initiator protein DnaA [Enterococcus faecalis TX0017] gi|315036380|gb|EFT48312.1| replication initiator protein DnaA [Enterococcus faecalis TX0027] gi|315143595|gb|EFT87611.1| replication initiator protein DnaA [Enterococcus faecalis TX2141] gi|315148267|gb|EFT92283.1| replication initiator protein DnaA [Enterococcus faecalis TX4244] gi|315151291|gb|EFT95307.1| replication initiator protein DnaA [Enterococcus faecalis TX0012] gi|315153717|gb|EFT97733.1| replication initiator protein DnaA [Enterococcus faecalis TX0031] gi|315155123|gb|EFT99139.1| replication initiator protein DnaA [Enterococcus faecalis TX0043] gi|315158747|gb|EFU02764.1| replication initiator protein DnaA [Enterococcus faecalis TX0312] gi|315163331|gb|EFU07348.1| replication initiator protein DnaA [Enterococcus faecalis TX0645] gi|315165728|gb|EFU09745.1| replication initiator protein DnaA [Enterococcus faecalis TX1302] gi|315168220|gb|EFU12237.1| replication initiator protein DnaA [Enterococcus faecalis TX1341] gi|315174182|gb|EFU18199.1| replication initiator protein DnaA [Enterococcus faecalis TX1346] gi|315573991|gb|EFU86182.1| replication initiator protein DnaA [Enterococcus faecalis TX0309B] gi|315578839|gb|EFU91030.1| replication initiator protein DnaA [Enterococcus faecalis TX0630] gi|315581942|gb|EFU94133.1| replication initiator protein DnaA [Enterococcus faecalis TX0309A] gi|323479240|gb|ADX78679.1| chromosomal replication initiator protein DnaA [Enterococcus faecalis 62] gi|327533854|gb|AEA92688.1| ATPase [Enterococcus faecalis OG1RF] Length = 447 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 41/234 (17%), Positives = 84/234 (35%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS--- 88 + D ++ + A + P + G G GK+ L + + Sbjct: 112 NPKYTFDTFVIGKGNQMAHAAALVVAEDPGSIYNPLFFYGGVGLGKTHLMHAIGHQMLVN 171 Query: 89 --RSTRFSNIAKSLDSILIDTR---------------KPVLLEDIDLLDFNDTQL---FH 128 + +++ + I++ +L++DI L + L FH Sbjct: 172 QPDAKVKYVSSETFTNEFINSIQTKTSEQFRKEYRNVDLLLVDDIQFLAEKEATLEEFFH 231 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N ++ + +++T+ P L SR V I+ PD + ++ K Sbjct: 232 TFNDLYNENKQIVLTSDRPPNDIPKLPERLVSRFAWGLSVDITPPDLETRIAILRKKADA 291 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ I +YI +++ ++ E + ++ A G IT SLAA+ LK Sbjct: 292 ERLEIPDDTLSYIAGQIDSNIRELEGALVRVQAFATINGEDITTSLAADALKSL 345 >gi|226225407|ref|YP_002759513.1| chromosomal replication initiator protein DnaA [Gemmatimonas aurantiaca T-27] gi|226088598|dbj|BAH37043.1| chromosomal replication initiator protein DnaA [Gemmatimonas aurantiaca T-27] Length = 472 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 43/248 (17%), Positives = 95/248 (38%), Gaps = 28/248 (11%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN 82 +Q S P + D ++ + + A + P +V + + G +G GK+ L Sbjct: 109 QQPRISTPLNPRYTFDQFVIGKSNDVAAAAAQAAAQAPGKVYNPLFIYGETGLGKTHLMQ 168 Query: 83 IWSDK------------------SRSTRFSNIAKSLDSILIDTRK--PVLLEDIDLLDFN 122 + + + + A ++ R+ +L++D+ L Sbjct: 169 GIAHELLRRTPTLRLAYVGTEQFTNEFIGAIQAGAMGDFRRRFREIDLLLVDDVQFLKGK 228 Query: 123 D---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179 + + FH N+I++ +++T+ P L SR + V I PD + Sbjct: 229 ESTQEEFFHTFNAIYEAGRQIVLTSDRPPKEIPGLESRLVSRFEWGMVANIDSPDLEHRI 288 Query: 180 KVIVKMFADR--QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237 ++ K + ++ I ++ +I Q ++ S+ E + K+ A + I+ LA E Sbjct: 289 AILKKKASLDHLELTIPDEVIEFIAQHVKSSVRELEGSIIKLLAYASLKHRDISVDLARE 348 Query: 238 VLKETQQC 245 L++ + Sbjct: 349 ALRDKLRA 356 >gi|329960254|ref|ZP_08298696.1| replication initiator protein DnaA [Bacteroides fluxus YIT 12057] gi|328532927|gb|EGF59704.1| replication initiator protein DnaA [Bacteroides fluxus YIT 12057] Length = 465 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 41/242 (16%), Positives = 86/242 (35%), Gaps = 28/242 (11%) Query: 33 PR-CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV----VILVGPSGSGKSCLANIWSDK 87 P + + + + + + + ++ P++ + L G SG GK+ LAN K Sbjct: 125 PHLNPEYNFETFIEGYSNKLSRSVAEAVALNPAKTIFNPLFLYGASGVGKTHLANAIGTK 184 Query: 88 -------SRSTRFSNIA---KSLDSILIDTRKPVL-------------LEDIDLLDFNDT 124 R S + DS+ +T + +++ + Sbjct: 185 IKELYPEKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQTIDILIIDDIQEFAGVTKTQN 244 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 FHI N +HQ L++T+ PV L +R K V ++ P + + ++ Sbjct: 245 TFFHIFNHLHQNGKQLILTSDRAPVLLQGMEERLITRFKWGMVAELERPTVELRKNILRN 304 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 + ++ YI + + S+ E +V + + I LA ++++ Sbjct: 305 KIHRDGLQFPPEVIDYIAENVGDSVRDLEGIVISIMAHSTIYNKDIDLELAQRIVRKVVN 364 Query: 245 CD 246 D Sbjct: 365 SD 366 >gi|315644300|ref|ZP_07897470.1| chromosomal replication initiation protein [Paenibacillus vortex V453] gi|315280675|gb|EFU43964.1| chromosomal replication initiation protein [Paenibacillus vortex V453] Length = 448 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 87/233 (37%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW------- 84 + D ++ S A + P++ + L G G GK+ L + Sbjct: 111 NPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFLYGGVGLGKTHLMHAIGHYILEH 170 Query: 85 ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128 S+K + ++I + + + V L++DI L + + FH Sbjct: 171 NPSSKVVYISSEKFTNEFINSIRDNRAESFRNKYRSVDILLIDDIQFLAGKESTQEEFFH 230 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H+ +++++ P L SR + + I PD + ++ K Sbjct: 231 TFNALHEERKQIIISSDRPPKEIPTLEERLRSRFEWGLITDIQPPDLETRIAILRKKAKA 290 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I + YI +++ ++ E + ++ + +T LAAE LK+ Sbjct: 291 ENLDIPNEAMMYIANQIDTNIRELEGALIRVVAYSSLTNQDVTTHLAAEALKD 343 >gi|229100789|ref|ZP_04231609.1| Chromosomal replication initiator protein dnaA [Bacillus cereus Rock3-28] gi|228682628|gb|EEL36685.1| Chromosomal replication initiator protein dnaA [Bacillus cereus Rock3-28] Length = 337 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 87/233 (37%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86 + D ++ S A + P++ + + G G GK+ L + + Sbjct: 3 NPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIEH 62 Query: 87 KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 + ++ + I++ + +L++DI L + + FH Sbjct: 63 NPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFH 122 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H+ +++++ P L SR + + I+ PD + ++ K Sbjct: 123 TFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 182 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I ++ YI +++ ++ E + ++ + I LAAE LK+ Sbjct: 183 EGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINADLAAEALKD 235 >gi|296330037|ref|ZP_06872521.1| chromosomal replication initiation protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305672699|ref|YP_003864370.1| chromosomal replication initiation protein [Bacillus subtilis subsp. spizizenii str. W23] gi|296153076|gb|EFG93941.1| chromosomal replication initiation protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305410942|gb|ADM36060.1| chromosomal replication initiation protein [Bacillus subtilis subsp. spizizenii str. W23] Length = 446 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 45/267 (16%), Positives = 96/267 (35%), Gaps = 35/267 (13%) Query: 10 FFVPDKQKNDQPKNKEE------QLFFSFP---RCLGISRDDLLVHSAIEQAVRLIDSWP 60 F +P Q + K + + FP + D ++ S A + Sbjct: 78 FVIPQNQDVEDFMPKPQVKKAVKEDTSDFPQNMLNPKYTFDTFVIGSGNRFAHAASLAVA 137 Query: 61 SWPSRV---VILVGPSGSGKSCLANIW------SDKSRSTRFSNIAKSLDSILIDTR--- 108 P++ + + G G GK+ L + + S + + K + + R Sbjct: 138 EAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIDHNPSAKVVYLSSEKFTNEFINSIRDNK 197 Query: 109 -----------KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 +L++DI L + + FH N++H+ +++++ P Sbjct: 198 AVDFRNRYRNVDVLLIDDIQFLAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTL 257 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 L SR + + I+ PD + ++ K + I ++ YI +++ ++ E Sbjct: 258 EDRLRSRFEWGLITDITPPDLETRIAILRKKAKAEGLDIPNEVMLYIANQIDSNIRELEG 317 Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKE 241 + ++ + I LAAE LK+ Sbjct: 318 ALIRVVAYSSLINKDINADLAAEALKD 344 >gi|220927460|ref|YP_002504369.1| chromosomal replication initiation protein [Clostridium cellulolyticum H10] gi|254777895|sp|B8I3R2|DNAA_CLOCE RecName: Full=Chromosomal replication initiator protein DnaA gi|219997788|gb|ACL74389.1| chromosomal replication initiator protein DnaA [Clostridium cellulolyticum H10] Length = 440 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 38/270 (14%), Positives = 93/270 (34%), Gaps = 38/270 (14%) Query: 6 EDYSFFVPDKQKNDQPKNKEEQ-------LFFSFPRCLGISRDDLLVHSAIEQAVRLIDS 58 DY+ + + P Q + F + D ++ + A + Sbjct: 73 RDYNIYFA--IPSQTPVKPVAQEYTEDSNMSF---LNPKYTFDTFVIGNGNRFAHAASLA 127 Query: 59 WPSWPSRV---VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAK 98 P++ + L G G GK+ L + S+K + + I Sbjct: 128 VAEAPAKAYNPLFLYGGVGLGKTHLMHAIGHFVLSQNPALKVLYVSSEKFTNELINAIRD 187 Query: 99 SLDSIL---IDTRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWG 152 + +L++DI + + + FH N++++ + +++++ P Sbjct: 188 DKNEEFRYKYRNIDVLLIDDIQFIGGKERTEEEFFHTFNALYEANKQIIISSDKPPKEIP 247 Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 L SR + + I+ PD + ++ K + + + +I ++ ++ Sbjct: 248 TLEDRLRSRFEWGLIADIAPPDLETRIAILRKKAQLENLDVPDDVMVFIADKVASNIREL 307 Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKET 242 E ++++ + I +A E LK+ Sbjct: 308 EGALNRVIAYSTLTENIINVDMAVEALKDM 337 >gi|312901296|ref|ZP_07760579.1| replication initiator protein DnaA [Enterococcus faecalis TX0470] gi|311291673|gb|EFQ70229.1| replication initiator protein DnaA [Enterococcus faecalis TX0470] Length = 447 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 41/234 (17%), Positives = 84/234 (35%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS--- 88 + D ++ + A + P + G G GK+ L + + Sbjct: 112 NPKYTFDTFVIGKGNQMAHAAALVVAEDPGSIYNPLFFYGGVGLGKTHLMHAIGHQMLVN 171 Query: 89 --RSTRFSNIAKSLDSILIDTR---------------KPVLLEDIDLLDFNDTQL---FH 128 + +++ + I++ +L++DI L + L FH Sbjct: 172 QPDAKVKYVSSETFTNEFINSIQTRTSEQFRKEYRNVDLLLVDDIQFLAEKEATLEEFFH 231 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N ++ + +++T+ P L SR V I+ PD + ++ K Sbjct: 232 TFNDLYNENKQIVLTSDRPPNDIPKLPERLVSRFAWGLSVDITPPDLETRIAILRKKADA 291 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ I +YI +++ ++ E + ++ A G IT SLAA+ LK Sbjct: 292 ERLEIPDDTLSYIAGQIDSNIRELEGALVRVQAFATINGEDITTSLAADALKSL 345 >gi|315125112|ref|YP_004067115.1| DNA replication initiator [Pseudoalteromonas sp. SM9913] gi|315013625|gb|ADT66963.1| DNA replication initiator [Pseudoalteromonas sp. SM9913] Length = 476 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 88/234 (37%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86 + D + + + A P V + G +G GK+ L + I ++ Sbjct: 142 KENYTFDSFVEGKSNQLAKAAATQVADNPGSAFNPVFIYGGTGLGKTHLLHAVGNGIMAN 201 Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128 K + ++ ++ + +E+ +D L +D + FH Sbjct: 202 KPDAKIVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALMIDDIQFFANKERSQEEFFH 261 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++ + + +++T+ +P L SR + I P+ + +++K Sbjct: 262 TFNALLEGNQQIILTSDRYPKEIEGVEDRLKSRFGWGLTIAIEPPELETRVAILMKKAQQ 321 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +I + ++A +I +++ ++ E ++++ A G I+ E L++ Sbjct: 322 SKINLPHEVAFFIAKKLRSNVRELEGALNRVIANANFTGRPISIDFVKEALRDL 375 >gi|152973855|ref|YP_001373372.1| chromosomal replication initiation protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189044630|sp|A7GJR9|DNAA_BACCN RecName: Full=Chromosomal replication initiator protein DnaA gi|152022607|gb|ABS20377.1| chromosomal replication initiator protein DnaA [Bacillus cytotoxicus NVH 391-98] Length = 446 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 87/233 (37%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86 + D ++ S A + P++ + + G G GK+ L + + Sbjct: 112 NPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIEH 171 Query: 87 KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 + ++ + I++ + +L++DI L + + FH Sbjct: 172 NPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFH 231 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H+ +++++ P L SR + + I+ PD + ++ K Sbjct: 232 TFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 291 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I ++ YI +++ ++ E + ++ + I LAAE LK+ Sbjct: 292 EGLDIPNEVMIYIANQIDSNIRELEGALIRVVAYSSLINKDINADLAAEALKD 344 >gi|157690799|ref|YP_001485261.1| chromosomal replication initiation protein [Bacillus pumilus SAFR-032] gi|167016898|sp|A8F8Y4|DNAA_BACP2 RecName: Full=Chromosomal replication initiator protein DnaA gi|157679557|gb|ABV60701.1| DNA-directed DNA replication initiator protein [Bacillus pumilus SAFR-032] Length = 446 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 45/267 (16%), Positives = 97/267 (36%), Gaps = 35/267 (13%) Query: 10 FFVPDKQKN--DQPKNKEEQL----FFSFP---RCLGISRDDLLVHSAIEQAVRLIDSWP 60 F +P Q PK+ +++ P + D ++ S A + Sbjct: 78 FIIPQNQDEVEAMPKSPIKKMSKEDPVDIPQNMLNPKYTFDTFVIGSGNRFAHAASLAVA 137 Query: 61 SWPSRV---VILVGPSGSGKSCLANIW------SDKSRSTRFSNIAKSLDSILIDTR--- 108 P++ + + G G GK+ L + + S + + K + + R Sbjct: 138 EAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIDHNPSAKVVYLSSEKFTNEFINSIRDNK 197 Query: 109 -----------KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 +L++DI L + + FH N++H+ +++++ P Sbjct: 198 AVDFRNRYRNVDVLLIDDIQFLAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTL 257 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 L SR + + I+ PD + ++ K + I ++ YI +++ ++ E Sbjct: 258 EDRLRSRFEWGLITDITPPDLETRIAILRKKAKAEGLDIPNEVMLYIANQIDSNIRELEG 317 Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKE 241 + ++ + I LAAE LK+ Sbjct: 318 ALIRVVAYSSLINKDINADLAAEALKD 344 >gi|332685535|ref|YP_004455309.1| chromosomal replication initiator protein DnaA [Melissococcus plutonius ATCC 35311] gi|332369544|dbj|BAK20500.1| chromosomal replication initiator protein DnaA [Melissococcus plutonius ATCC 35311] Length = 447 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 41/237 (17%), Positives = 84/237 (35%), Gaps = 26/237 (10%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS--- 88 S D ++ + A + P + G G GK+ L + + Sbjct: 112 NPKYSFDTFVIGKGNQMAHAAALVVAEDPGSIYNPLFFYGGVGLGKTHLMHAIGHQMCLN 171 Query: 89 --RSTRFSNIAKSLDSILIDTR---------------KPVLLEDIDLLDFNDTQL---FH 128 + +++ + I++ +L++DI L + L FH Sbjct: 172 QPDAKVKYVSSETFTNEFINSIQTKNSEEFRKEYRNVDLLLVDDIQFLAEKEATLEEFFH 231 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N ++ + +++T+ P L SR V I+ PD + ++ K Sbjct: 232 TFNDLYNDNKQIVLTSDRPPNDIQKLPERLVSRFAWGLSVDITPPDLETRIAILRKKADA 291 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 ++ I +YI +++ ++ E + ++ G IT SLAA+ LK + Sbjct: 292 ERLEIPDDTLSYIAGQIDSNIRELEGALVRVQAYGTINGEDITTSLAADALKSLKSA 348 >gi|325066321|ref|ZP_08124994.1| chromosomal replication initiator protein DnaA [Actinomyces oris K20] Length = 559 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 41/238 (17%), Positives = 87/238 (36%), Gaps = 31/238 (13%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRS- 90 + D + S+ A + P+R + + G SG GK+ L + +++ Sbjct: 213 NPRYTFDTYVTGSSNRFAHATALAVAEAPARAYNPLFIYGGSGLGKTHLLHAIGHYAQTL 272 Query: 91 ------------TRFSNIAKSLDSILIDTRKP------------VLLEDIDLLDFNDTQL 126 S+ + D + +L++DI L ++ L Sbjct: 273 NPGIRVKYVNSEVFVSDFIACVRDGNQDDGRMEGFKRRYREVDILLVDDIQFLQGKESTL 332 Query: 127 ---FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 FH NS+H +++T+ P + G L SR + + + PD + ++ Sbjct: 333 EEFFHTFNSLHSSGKQVVLTSDQPPKALGGLDERLRSRFEWGLLADVQPPDLETRIAILS 392 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + + + + YI R+ ++ E + ++ A + ++LA VLK+ Sbjct: 393 RKGTAEGLDLPFDVLEYIASRITTNIRELEGALIRVTAFASLNKQPVDQTLAEMVLKD 450 >gi|194016318|ref|ZP_03054932.1| chromosomal replication initiator protein DnaA [Bacillus pumilus ATCC 7061] gi|194011791|gb|EDW21359.1| chromosomal replication initiator protein DnaA [Bacillus pumilus ATCC 7061] Length = 446 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 45/267 (16%), Positives = 97/267 (36%), Gaps = 35/267 (13%) Query: 10 FFVPDKQKN--DQPKNKEEQL----FFSFP---RCLGISRDDLLVHSAIEQAVRLIDSWP 60 F +P Q PK+ +++ P + D ++ S A + Sbjct: 78 FIIPQNQDEVEAMPKSPIKKMSKEDPVDIPQNMLNPKYTFDTFVIGSGNRFAHAASLAVA 137 Query: 61 SWPSRV---VILVGPSGSGKSCLANIW------SDKSRSTRFSNIAKSLDSILIDTR--- 108 P++ + + G G GK+ L + + S + + K + + R Sbjct: 138 EAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIDHNPSAKVVYLSSEKFTNEFINSIRDNK 197 Query: 109 -----------KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 +L++DI L + + FH N++H+ +++++ P Sbjct: 198 AVDFRNRYRNVDVLLIDDIQFLAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTL 257 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 L SR + + I+ PD + ++ K + I ++ YI +++ ++ E Sbjct: 258 EDRLRSRFEWGLITDITPPDLETRIAILRKKAKAEGLDIPNEVMLYIANQIDSNIRELEG 317 Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKE 241 + ++ + I LAAE LK+ Sbjct: 318 ALIRVVAYSSLINKDINADLAAEALKD 344 >gi|16077069|ref|NP_387882.1| chromosomal replication initiation protein [Bacillus subtilis subsp. subtilis str. 168] gi|221307810|ref|ZP_03589657.1| chromosomal replication initiation protein [Bacillus subtilis subsp. subtilis str. 168] gi|221312132|ref|ZP_03593937.1| chromosomal replication initiation protein [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317065|ref|ZP_03598359.1| chromosomal replication initiation protein [Bacillus subtilis subsp. subtilis str. JH642] gi|221321328|ref|ZP_03602622.1| chromosomal replication initiation protein [Bacillus subtilis subsp. subtilis str. SMY] gi|321313668|ref|YP_004205955.1| chromosomal replication initiation protein [Bacillus subtilis BSn5] gi|118704|sp|P05648|DNAA_BACSU RecName: Full=Chromosomal replication initiator protein DnaA gi|40014|emb|CAA26217.1| unnamed protein product [Bacillus subtilis] gi|467391|dbj|BAA05237.1| initiation protein of replicaton [Bacillus subtilis] gi|2632268|emb|CAB11777.1| chromosomal replication initiator protein DnaA [Bacillus subtilis subsp. subtilis str. 168] gi|291482370|dbj|BAI83445.1| chromosomal replication initiation protein [Bacillus subtilis subsp. natto BEST195] gi|320019942|gb|ADV94928.1| chromosomal replication initiation protein [Bacillus subtilis BSn5] Length = 446 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 45/267 (16%), Positives = 96/267 (35%), Gaps = 35/267 (13%) Query: 10 FFVPDKQKNDQPKNKEE------QLFFSFP---RCLGISRDDLLVHSAIEQAVRLIDSWP 60 F +P Q + K + + FP + D ++ S A + Sbjct: 78 FVIPQNQDVEDFMPKPQVKKAVKEDTSDFPQNMLNPKYTFDTFVIGSGNRFAHAASLAVA 137 Query: 61 SWPSRV---VILVGPSGSGKSCLANIW------SDKSRSTRFSNIAKSLDSILIDTR--- 108 P++ + + G G GK+ L + + S + + K + + R Sbjct: 138 EAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIDHNPSAKVVYLSSEKFTNEFINSIRDNK 197 Query: 109 -----------KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 +L++DI L + + FH N++H+ +++++ P Sbjct: 198 AVDFRNRYRNVDVLLIDDIQFLAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTL 257 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 L SR + + I+ PD + ++ K + I ++ YI +++ ++ E Sbjct: 258 EDRLRSRFEWGLITDITPPDLETRIAILRKKAKAEGLDIPNEVMLYIANQIDSNIRELEG 317 Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKE 241 + ++ + I LAAE LK+ Sbjct: 318 ALIRVVAYSSLINKDINADLAAEALKD 344 >gi|331004666|ref|ZP_08328128.1| chromosomal replication initiator protein DnaA [Lachnospiraceae oral taxon 107 str. F0167] gi|330409593|gb|EGG89033.1| chromosomal replication initiator protein DnaA [Lachnospiraceae oral taxon 107 str. F0167] Length = 462 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 42/244 (17%), Positives = 89/244 (36%), Gaps = 32/244 (13%) Query: 35 CLGISRDDLLVHSAI----EQAVRLIDSW----PSWPSRVVILVGPSGSGKSCLANIWS- 85 + D +V + A+ + +S P + G G GK+ L + + Sbjct: 120 DPLYTFDTFVVGKSNDLAHATAIAVAESPGSQNPGEHYNPFFIYGGVGLGKTHLMHSIAH 179 Query: 86 ----------------DKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND--- 123 +K + + S + V L++DI + D Sbjct: 180 YILEHNPDSIILYVSSEKFLNEYIDALKNSNLQEYRSKYRNVDVLLIDDIQFIGGKDAIQ 239 Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 +LFH N++++ +++++ P+ L SR V+I PD + ++ Sbjct: 240 EELFHTFNALYEQKKQIILSSDRPPMELKNLEERLRSRFAWGVAVEIFSPDFETRMAILR 299 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA-LSRGMGITRSLAAEVLKET 242 ID ++ +I ++ ++ E ++K+ ++ L++ I LA VLK+ Sbjct: 300 SKEERDGKNIDNEVIQFIATNIKSNIRMLEGALNKLYAMSRLNKNQEIDIDLAKSVLKDM 359 Query: 243 QQCD 246 D Sbjct: 360 ITPD 363 >gi|291536990|emb|CBL10102.1| chromosomal replication initiator protein DnaA [Roseburia intestinalis M50/1] gi|291539806|emb|CBL12917.1| chromosomal replication initiator protein DnaA [Roseburia intestinalis XB6B4] Length = 452 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 33/241 (13%), Positives = 84/241 (34%), Gaps = 29/241 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLAN-----IWSD 86 + D +V S A + P + + G G GK+ L + I Sbjct: 113 NPNYTFDTFVVGSNNRFAQSASLAVAESPGEAYNPLYIYGGPGLGKTHLMHSIGHFILER 172 Query: 87 KSRSTRFSNIAKSLDSILIDTRKP------------------VLLEDIDLLDFND---TQ 125 + ++ + +I++ + ++++D+ + + + Sbjct: 173 NPNAKVLYVTSEEFTNEVIESIRSGNASAMNKLREKYRTIDVLMVDDVQFIIGKESTQEE 232 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 FH N++H +++T+ P + SR + + I PD + ++ + Sbjct: 233 FFHTFNALHSAGKQIILTSDKPPKDMETLEDRIRSRFEWGLIADIGTPDYETRMAILRRK 292 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 + + ++ YI ++ ++ E ++K+ + IT +A + L+ Sbjct: 293 VEADDMKLSDEILNYIATNIKSNIRELEGALNKLLAYSNLEKTDITMEIAMKELQNIITP 352 Query: 246 D 246 D Sbjct: 353 D 353 >gi|257413825|ref|ZP_04744343.2| DNA replication initiator protein, ATPase [Roseburia intestinalis L1-82] gi|257202158|gb|EEV00443.1| DNA replication initiator protein, ATPase [Roseburia intestinalis L1-82] Length = 456 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 33/241 (13%), Positives = 84/241 (34%), Gaps = 29/241 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLAN-----IWSD 86 + D +V S A + P + + G G GK+ L + I Sbjct: 117 NPNYTFDTFVVGSNNRFAQSASLAVAESPGEAYNPLYIYGGPGLGKTHLMHSIGHFILER 176 Query: 87 KSRSTRFSNIAKSLDSILIDTRKP------------------VLLEDIDLLDFND---TQ 125 + ++ + +I++ + ++++D+ + + + Sbjct: 177 NPNAKVLYVTSEEFTNEVIESIRSGNASAMNKLREKYRTIDVLMVDDVQFIIGKESTQEE 236 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 FH N++H +++T+ P + SR + + I PD + ++ + Sbjct: 237 FFHTFNALHSAGKQIILTSDKPPKDMETLEDRIRSRFEWGLIADIGTPDYETRMAILRRK 296 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 + + ++ YI ++ ++ E ++K+ + IT +A + L+ Sbjct: 297 VEADDMKLSDEILNYIATNIKSNIRELEGALNKLLAYSNLEKTDITMEIAMKELQNIITP 356 Query: 246 D 246 D Sbjct: 357 D 357 >gi|308066839|ref|YP_003868444.1| Chromosomal replication initiator protein dnaA [Paenibacillus polymyxa E681] gi|305856118|gb|ADM67906.1| Chromosomal replication initiator protein dnaA [Paenibacillus polymyxa E681] Length = 451 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 39/233 (16%), Positives = 86/233 (36%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW------- 84 + D ++ S A + P++ + L G G GK+ L + Sbjct: 114 NPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFLYGGVGLGKTHLMHAIGHYILEH 173 Query: 85 ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128 S+K + + I + + + + L++DI + + + FH Sbjct: 174 NPTSKVVYLSSEKFTNEFINAIRDNRGESFRNKYRNIDILLIDDIQFIAGKESTQEEFFH 233 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H+ +++++ P L SR + + I PD + ++ K Sbjct: 234 TFNALHEERKQIIISSDRPPKEIPTLEERLRSRFEWGLITDIQPPDLETRIAILRKKARA 293 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I + YI +++ ++ E + ++ + +T LAAE LK+ Sbjct: 294 ENLDIPNEAMMYIANQIDTNIRELEGALIRVVAYSSLTNQDVTSHLAAEALKD 346 >gi|182416749|ref|ZP_02948146.1| chromosomal replication initiator protein DnaA [Clostridium butyricum 5521] gi|237669665|ref|ZP_04529643.1| chromosomal replication initiator protein DnaA [Clostridium butyricum E4 str. BoNT E BL5262] gi|182379406|gb|EDT76901.1| chromosomal replication initiator protein DnaA [Clostridium butyricum 5521] gi|237654899|gb|EEP52461.1| chromosomal replication initiator protein DnaA [Clostridium butyricum E4 str. BoNT E BL5262] Length = 450 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 35/233 (15%), Positives = 87/233 (37%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW------- 84 + + ++ ++ A + P+ + + G G GK+ L + Sbjct: 114 NPKYTFNSFVIGNSNRFAHAASLAVAESPAKAYNPLFIYGGVGLGKTHLMHAIGHYILDN 173 Query: 85 ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128 S+K + + I + + + V L++DI + + + FH Sbjct: 174 NPSAKVVYVSSEKFTNELINAIKDDKNEDFRNKYRNVDVLLIDDIQFIAGKERTQEEFFH 233 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H + +++++ P L SR + + I +PD + ++ K Sbjct: 234 TFNALHDANKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQVPDFETRMAILKKKADV 293 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + + ++ YI +++ ++ E + ++ + +T LA E LK+ Sbjct: 294 ENLNVANEVMGYIATKIKSNIRELEGALIRIIAYSSLTNRDVTVDLATEALKD 346 >gi|222053118|ref|YP_002535480.1| chromosomal replication initiator protein DnaA [Geobacter sp. FRC-32] gi|254777903|sp|B9M7S1|DNAA_GEOSF RecName: Full=Chromosomal replication initiator protein DnaA gi|221562407|gb|ACM18379.1| chromosomal replication initiator protein DnaA [Geobacter sp. FRC-32] Length = 445 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 44/263 (16%), Positives = 98/263 (37%), Gaps = 30/263 (11%) Query: 5 KEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP- 63 K+ +K +ND +N + F+ + D + ++ + A + + P Sbjct: 85 KKKVDLQATEKIENDSTRN----VDFNTNLNPKYTFDSFVCGASNQFAHAASQAVANNPA 140 Query: 64 --SRVVILVGPSGSGKSCLANIWSDKSRSTRFSN------------------IAKSLDSI 103 + + G G GK+ L ++ R K +D Sbjct: 141 CNYNPLFIYGGVGLGKTHLLIAIGNQIRENNKKAKICYYSSEKFMNEMINSLRYKKMDEF 200 Query: 104 LIDTRKP--VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158 RK +L++DI + + + FH N++++ +++T+ FP L Sbjct: 201 RNKFRKMDILLIDDIQFMAGKEATQEEFFHTFNALYESHKQIVVTSDKFPKDIPGLEERL 260 Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218 SR + + I PD + ++ K I + +A ++ ++ E ++ + Sbjct: 261 RSRFEWGLIADIQPPDIETKIAILKKKSDLNSITLPNDVALFLASSATSNVRELEGMLIR 320 Query: 219 MDNLALSRGMGITRSLAAEVLKE 241 + A G I+ ++A ++LK+ Sbjct: 321 LGAYASLTGSEISLNMARDILKD 343 >gi|262373132|ref|ZP_06066411.1| DnaA regulatory inactivator Hda [Acinetobacter junii SH205] gi|262313157|gb|EEY94242.1| DnaA regulatory inactivator Hda [Acinetobacter junii SH205] Length = 232 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 41/226 (18%), Positives = 82/226 (36%), Gaps = 17/226 (7%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 QL L D V I + + G +G+GKS L + Sbjct: 2 RQLQLDIEPQLDARISDF-SGPGWGPIVDAIRQLHTGLVSRFYVYGGAGTGKSHLLSAIC 60 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKP---------VLLEDIDLLDF---NDTQLFHIINSI 133 D I SL +L + V L+D+D + +FH++N Sbjct: 61 DSYLELNRPAIKVSLLELLDAPIEAITSLEFYDLVALDDVDAICGVPHWQKAVFHLMN-- 118 Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL-PDDDFLEKVIVKMFADRQIF 192 ++ L+ ++R P+ + LPDL SRL A VK+ + ++ + R I Sbjct: 119 -NHEGQLVFSSRVAPIELKLELPDLQSRLTQAVSVKVPNGSSFIDRQALLQSVMNRRGIH 177 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238 D+++ Y++ + + +++ + ++ + ++ Sbjct: 178 FDQQIVDYLLNNGPHQASVLLQTLAQLEKMLKGEKTKLSNTTLKQI 223 >gi|71905643|ref|YP_283230.1| chromosomal replication initiator protein DnaA [Dechloromonas aromatica RCB] gi|123760693|sp|Q47K71|DNAA_DECAR RecName: Full=Chromosomal replication initiator protein DnaA gi|71845264|gb|AAZ44760.1| chromosomal replication initiator protein, DnaA [Dechloromonas aromatica RCB] Length = 465 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 88/233 (37%), Gaps = 26/233 (11%) Query: 36 LGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLAN---------- 82 + D+L+V A + A + + P + + G +G GK+ L + Sbjct: 133 PSFTFDNLVVGKANDLARAAAVQVANNPGGAYNPLFIYGGAGLGKTHLIHAIGNTIATEN 192 Query: 83 -------IWSDKSRSTRFSNIAKSLDSILIDTRKP---VLLEDIDLLDF---NDTQLFHI 129 + ++ S + T + +LL+D+ + + + F + Sbjct: 193 PEKIVRYVHAEDYYSDVVRAYQQKSFDSFKRTYRSLDVLLLDDVQFFNGKNRSQEEFFFL 252 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N++ + +++T T+P L +R V+I P+ + ++ K Sbjct: 253 FNALIEARKQIIITCDTYPKDINGLDDRLVTRFDWGLTVQIEPPELEMRVAILKKKAEAE 312 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 I +D ++A +I + + ++ E + K+ + G I LA E LK+ Sbjct: 313 GIQLDDEVAFFIAKHLRSNVRELEGALKKVLAYSSFHGRVIALDLAKEALKDV 365 >gi|261403877|ref|YP_003240118.1| chromosomal replication initiation protein [Paenibacillus sp. Y412MC10] gi|329925078|ref|ZP_08280022.1| chromosomal replication initiator protein DnaA [Paenibacillus sp. HGF5] gi|261280340|gb|ACX62311.1| chromosomal replication initiator protein DnaA [Paenibacillus sp. Y412MC10] gi|328940197|gb|EGG36529.1| chromosomal replication initiator protein DnaA [Paenibacillus sp. HGF5] Length = 448 Score = 115 bits (289), Expect = 6e-24, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 87/233 (37%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW------- 84 + D ++ S A + P++ + L G G GK+ L + Sbjct: 111 NPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFLYGGVGLGKTHLMHAIGHYILEH 170 Query: 85 ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128 S+K + ++I + + + V L++DI L + + FH Sbjct: 171 NPSSKVVYISSEKFTNEFINSIRDNRAESFRNKYRNVDILLIDDIQFLAGKESTQEEFFH 230 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H+ +++++ P L SR + + I PD + ++ K Sbjct: 231 TFNALHEERKQIIISSDRPPKEIPTLEERLRSRFEWGLITDIQPPDLETRIAILRKKAKA 290 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I + YI +++ ++ E + ++ + +T LAAE LK+ Sbjct: 291 ENLDIPNEAMMYIANQIDTNIRELEGALIRVVAYSSLTNQDVTTHLAAEALKD 343 >gi|325130189|gb|EGC52963.1| DnaA regulatory inactivator Hda [Neisseria meningitidis OX99.30304] Length = 147 Score = 115 bits (289), Expect = 6e-24, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 60/137 (43%), Gaps = 1/137 (0%) Query: 108 RKPVLLEDIDLLDFNDTQL-FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 + + ++ ++ L + L F I N L+ + V DL +R+ Sbjct: 9 AEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTRMAYCL 68 Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 V ++ D + M A RQ+ +D ++ Y+++ R + ++D +DN A++ Sbjct: 69 VYEVKPLTDQEKIDALASMAAARQVTVDSEIFEYLLKHWRRDMDSLMMMLDTLDNYAVTM 128 Query: 227 GMGITRSLAAEVLKETQ 243 G IT L ++LK+ + Sbjct: 129 GKRITLPLLRQLLKQQE 145 >gi|228994208|ref|ZP_04154108.1| Chromosomal replication initiator protein dnaA [Bacillus pseudomycoides DSM 12442] gi|228995397|ref|ZP_04155069.1| Chromosomal replication initiator protein dnaA [Bacillus mycoides Rock3-17] gi|229003011|ref|ZP_04160870.1| Chromosomal replication initiator protein dnaA [Bacillus mycoides Rock1-4] gi|228758239|gb|EEM07425.1| Chromosomal replication initiator protein dnaA [Bacillus mycoides Rock1-4] gi|228764350|gb|EEM13225.1| Chromosomal replication initiator protein dnaA [Bacillus mycoides Rock3-17] gi|228765660|gb|EEM14314.1| Chromosomal replication initiator protein dnaA [Bacillus pseudomycoides DSM 12442] Length = 446 Score = 115 bits (289), Expect = 6e-24, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 87/233 (37%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86 + D ++ S A + P++ + + G G GK+ L + + Sbjct: 112 NPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIEH 171 Query: 87 KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 + ++ + I++ + +L++DI L + + FH Sbjct: 172 NPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFH 231 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H+ +++++ P L SR + + I+ PD + ++ K Sbjct: 232 TFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 291 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I ++ YI +++ ++ E + ++ + I LAAE LK+ Sbjct: 292 EGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINADLAAEALKD 344 >gi|118475779|ref|YP_892930.1| chromosomal replication initiation protein [Bacillus thuringiensis str. Al Hakam] gi|118415004|gb|ABK83423.1| chromosomal replication initiator protein [Bacillus thuringiensis str. Al Hakam] Length = 465 Score = 115 bits (289), Expect = 6e-24, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 87/233 (37%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86 + D ++ S A + P++ + + G G GK+ L + + Sbjct: 131 NPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIEH 190 Query: 87 KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 + ++ + I++ + +L++DI L + + FH Sbjct: 191 NPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFH 250 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H+ +++++ P L SR + + I+ PD + ++ K Sbjct: 251 TFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 310 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I ++ YI +++ ++ E + ++ + I LAAE LK+ Sbjct: 311 EGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINADLAAEALKD 363 >gi|256419058|ref|YP_003119711.1| chromosomal replication initiator protein DnaA [Chitinophaga pinensis DSM 2588] gi|256033966|gb|ACU57510.1| chromosomal replication initiator protein DnaA [Chitinophaga pinensis DSM 2588] Length = 477 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 38/258 (14%), Positives = 91/258 (35%), Gaps = 37/258 (14%) Query: 10 FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66 F +P ++ + QL + + + A R + P Sbjct: 124 FVIPGIKRVQI----DSQL------NPHYTFESYIEGDCNRVARRAGKTVSEKPGGTSFN 173 Query: 67 -VILVGPSGSGKSCLANIWSDK------SRSTRFSNIAKSLDSILIDTRKPVL------- 112 +++ G G GK+ LA ++ +++ + + K ++ + ++ ++ Sbjct: 174 PLVIYGAVGLGKTHLAQAIGNEVKRIHPNKAVLYVSAEKFINQFIDHSKNSIINDFIHFY 233 Query: 113 -------LEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 ++DI + F I N +HQ L++T+ P L SR Sbjct: 234 QLIDVLIVDDIQFFARAEKTQDAFFAIFNHLHQSGKQLILTSDKPPKDLDGLQERLLSRF 293 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 + + +PD + +++ + + + K++ Y+ ++ ++ E + + Sbjct: 294 RWGLSADMQMPDFETRMEILEMKMRNDGLEMPKEVVKYVAYNIQSNVRELEGALISLLAQ 353 Query: 223 ALSRGMGITRSLAAEVLK 240 + I LA VLK Sbjct: 354 SSLNRKEIDLELAKRVLK 371 >gi|254784274|ref|YP_003071702.1| chromosomal replication initiation protein [Teredinibacter turnerae T7901] gi|259645262|sp|C5BKL9|DNAA_TERTT RecName: Full=Chromosomal replication initiator protein DnaA gi|237685666|gb|ACR12930.1| chromosomal replication initiator protein DnaA [Teredinibacter turnerae T7901] Length = 593 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 35/229 (15%), Positives = 79/229 (34%), Gaps = 26/229 (11%) Query: 40 RDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW-----SDKSRST 91 D+ +V + + A + P + + G G GK+ L + K + Sbjct: 264 FDNFVVGKSNQLGLAAASQVAENPGGAYNPLFIYGGVGLGKTHLMHAVGNALVQRKPGAR 323 Query: 92 RFSNIAKSLDSILIDT---------------RKPVLLEDIDLLDFND---TQLFHIINSI 133 ++ + ++ +L++DI + + FH N++ Sbjct: 324 VVYLHSERFVADMVKALQLNAISDFKRFYRSVDALLIDDIQFFAGKERSQEEFFHTFNAL 383 Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193 + +++T +P L SR V I P+ + ++ + ++ + Sbjct: 384 LEGGQQIILTCDKYPKEINGLEERLKSRFGWGLTVAIEPPELETRVAILKRKAESSRMPL 443 Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 A +I QR+ ++ E + ++ A I+ L E LK+ Sbjct: 444 PDDAAFFIAQRIRSNVRELEGALKRVIANAQFTQRSISVELVREALKDL 492 >gi|107098995|ref|ZP_01362913.1| hypothetical protein PaerPA_01000001 [Pseudomonas aeruginosa PACS2] gi|296386473|ref|ZP_06875972.1| chromosomal replication initiation protein [Pseudomonas aeruginosa PAb1] Length = 381 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 37/235 (15%), Positives = 85/235 (36%), Gaps = 34/235 (14%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPS-----RVVILVGPSGSGKSCLANIW-------- 84 + ++ + + + A +W + + L G G GK+ L + Sbjct: 50 FTFENFVEGKSNQLARAA--AWQVADNLKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKN 107 Query: 85 --------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLF 127 +D ++ + + I + + +L++DI + + F Sbjct: 108 PNAKVVYLHSERFVADMVKALQLNAINEFKR--FYRSVDALLIDDIQFFARKERSQEEFF 165 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + +++T+ +P L SR V + P+ + +++K Sbjct: 166 HTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAE 225 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +I + A +I QR+ ++ E + ++ + G IT L E LK+ Sbjct: 226 QAKIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELIRESLKDL 280 >gi|290968154|ref|ZP_06559699.1| chromosomal replication initiator protein DnaA [Megasphaera genomosp. type_1 str. 28L] gi|290781829|gb|EFD94412.1| chromosomal replication initiator protein DnaA [Megasphaera genomosp. type_1 str. 28L] Length = 498 Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats. Identities = 44/247 (17%), Positives = 85/247 (34%), Gaps = 35/247 (14%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV----VILVGPSGSGKS 78 E QL + D+ +V ++ AV + P R + + G SG GK+ Sbjct: 150 TPENQL------DASYTFDNFIVGNSNRLAVAKAFAVADAPGRKEFNPLYIYGASGLGKT 203 Query: 79 CLANIWSD---------KSRSTRFSNIAKSLDSILIDTR-----------KPVLLEDIDL 118 L + + RS + + D +L++DI Sbjct: 204 HLMHAIGHRILEKFPHMRLRSITSEDFVNEFIKCIQDKNTESFRRQYRNIDVLLVDDIQF 263 Query: 119 LDFND-----TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 L D + FH N + Q +++T+ P+ L SR ++ +V I P Sbjct: 264 LGRGDKDSSKEEFFHTFNKLQQDKKQIVLTSDRPPLDIERMEERLRSRFQSGSVAWIDPP 323 Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233 D + ++ + ID + YI + ++ + + LA + +T S Sbjct: 324 DLETRTAILKTWAEKIHLSIDNESINYIAANVSENIRELSGAFNNIQVLASAEKAPVTLS 383 Query: 234 LAAEVLK 240 + ++ Sbjct: 384 MTQRAIR 390 >gi|228942638|ref|ZP_04105170.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975568|ref|ZP_04136120.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982204|ref|ZP_04142493.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis Bt407] gi|228777556|gb|EEM25834.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis Bt407] gi|228784178|gb|EEM32205.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817064|gb|EEM63157.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326937798|gb|AEA13694.1| chromosomal replication initiation [Bacillus thuringiensis serovar chinensis CT-43] Length = 446 Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats. Identities = 42/267 (15%), Positives = 96/267 (35%), Gaps = 35/267 (13%) Query: 10 FFVPDKQKNDQ------PKNKEEQLFFSFP---RCLGISRDDLLVHSAIEQAVRLIDSWP 60 F +P Q + +N + P + D ++ S A + Sbjct: 78 FIIPQSQSEEDIDLPPVKRNPAQDDSAHLPQSMLNPKYTFDTFVIGSGNRFAHAASLAVA 137 Query: 61 SWPSRV---VILVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDTRK--- 109 P++ + + G G GK+ L + + + ++ + I++ + Sbjct: 138 EAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIEHNPNAKVVYLSSEKFTNEFINSIRDNK 197 Query: 110 ------------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 +L++DI L + + FH N++H+ +++++ P Sbjct: 198 AVDFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFHTFNALHEESKQIVISSDRPPKEIPTL 257 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 L SR + + I+ PD + ++ K + I ++ YI +++ ++ E Sbjct: 258 EDRLRSRFEWGLITDITPPDLETRIAILRKKAKAEGLDIPNEVMLYIANQIDSNIRELEG 317 Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKE 241 + ++ + I LAAE LK+ Sbjct: 318 ALIRVVAYSSLINKDINADLAAEALKD 344 >gi|110639382|ref|YP_679591.1| chromosomal replication initiation protein [Cytophaga hutchinsonii ATCC 33406] gi|110282063|gb|ABG60249.1| chromosomal replication initiator protein DnaA [Cytophaga hutchinsonii ATCC 33406] Length = 471 Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats. Identities = 41/259 (15%), Positives = 84/259 (32%), Gaps = 27/259 (10%) Query: 13 PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVI 68 P K + + S D + + A + + P ++ Sbjct: 111 PGVSKETKQEVPAVSQPIDSQLNASYSFDTFIEGDCNKLARSAGLAVANKPGVTSFNPLL 170 Query: 69 LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTR-------------------- 108 + G G GK+ L ++ + + S ++ Sbjct: 171 VYGNVGLGKTHLVQAIGNQIKKNHADKKVLYMPSERFLSQFIEAMKNNQSQEFTNQFLGL 230 Query: 109 KPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 ++L+D+ L + FHI N +HQ +++T+ P L SR K Sbjct: 231 DVLILDDVQFLSGKEKTQEIFFHIFNHLHQSGKQIIITSDCAPKDIKGLQERLLSRFKWG 290 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 + +PD + +I K I I + Y+ ++ ++ E +V+ + Sbjct: 291 LSADLQVPDYETRNAIICKKMQFEGIEIAADVIDYLAYSVDTNMRDLEGVVNSLIAQHTL 350 Query: 226 RGMGITRSLAAEVLKETQQ 244 G I LA ++++ Q Sbjct: 351 SGRQIDLELAKQIIQNIVQ 369 >gi|169627109|ref|YP_001700758.1| chromosomal replication initiation protein [Mycobacterium abscessus ATCC 19977] gi|226735827|sp|B1MDH6|DNAA_MYCA9 RecName: Full=Chromosomal replication initiator protein DnaA gi|169239076|emb|CAM60104.1| Chromosomal replication initiator protein DnaA [Mycobacterium abscessus] Length = 491 Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats. Identities = 36/239 (15%), Positives = 88/239 (36%), Gaps = 28/239 (11%) Query: 31 SFPRCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87 + + ++ ++ A + P+ + + G SG GK+ L + + Sbjct: 149 DTSLNARYTFESFVIGASNRFSHAAAVAVSEAPARAYNPLFIWGESGLGKTHLLHA-AGN 207 Query: 88 SRSTRFSNI-----------AKSLDSILIDTRKP----------VLLEDIDLLDFND--- 123 F + ++S+ D R +L++DI ++ + Sbjct: 208 YAQRLFPGMRVKYVSTEEFTNDFINSLRDDRRVAFKRSYRDIDVLLVDDIQFIEGKEGIQ 267 Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 + FH N++H + +++++ P L +R + + + P+ + ++ Sbjct: 268 EEFFHTFNTLHNANKQIVISSDRPPKGLATLEDRLRTRFEWGLITDVQPPELETRIAILR 327 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 K ++ + + I R+ER++ E + ++ A I SLA VL++ Sbjct: 328 KKAQMDRLDVPDDVLELIASRIERNIRELEGALIRVTAFASLNKSPIELSLAEIVLRDL 386 >gi|256370825|ref|YP_003108649.1| chromosomal replication initiator protein DnaA [Acidimicrobium ferrooxidans DSM 10331] gi|256007409|gb|ACU52976.1| chromosomal replication initiator protein DnaA [Acidimicrobium ferrooxidans DSM 10331] Length = 458 Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 86/234 (36%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91 + + ++ S+ A + P+ + + G +G GK+ L + + +R Sbjct: 119 DPRYTFEAFVIGSSNRFAHAAALSVAETPARSYNPLFIHGDAGLGKTHLLHAIGNYAREN 178 Query: 92 R-----------------FSNIAKSLDSILIDTRKP---VLLEDIDLLDFND---TQLFH 128 I ++ S + +L++DI L+ + + FH Sbjct: 179 YPNLLTTYVSTETFLNEFVDAIKRNQTSEFKARYRACDILLVDDIQFLEGKEAIQEEFFH 238 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N+++ +++T+ P + L SR + + PD + ++ + D Sbjct: 239 TFNTLYGAQKQIVLTSDRPPRALATLEDRLRSRFAMGLITDVQPPDLETRAAILRRKAED 298 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + +I + ++ E + ++ + GIT ++A +VL + Sbjct: 299 AGVTVPATVIEFIAASITDNIRELEGALTRLAAFSTLSQTGITLTMAEQVLSDL 352 >gi|291561644|emb|CBL40443.1| chromosomal replication initiator protein DnaA [butyrate-producing bacterium SS3/4] Length = 454 Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats. Identities = 42/250 (16%), Positives = 85/250 (34%), Gaps = 30/250 (12%) Query: 27 QLFF-SFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLAN 82 QL + + D +V A + P + + G G GK+ L + Sbjct: 106 QLALQNANLNPRYTFDTFVVGKNNNLAHAASLAVAESPGEIYNPLFIYGGVGLGKTHLMH 165 Query: 83 -----IWSDKSRSTRFSNIAKSLDSILIDT------------------RKPVLLEDIDLL 119 I + + ++ + LID +L++DI + Sbjct: 166 SVAHFILKNNPSAKILYVTSEKFTNELIDAIRNKNNVSTTEFREKYRNNDVLLIDDIQFI 225 Query: 120 DFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 + + FH N++++ +++++ P L SR + V I PD + Sbjct: 226 IGKESTQEEFFHTFNALYEAKKQIIISSDRPPREIETLEDRLRSRFEWGLTVDIQPPDYE 285 Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236 ++ K ID ++ YI ++ ++ E + K+ + I LA Sbjct: 286 TRMAILRKKEELEGYNIDNEIIKYIATNVKSNIRELEGALTKIVASSKLNNKEINLELAE 345 Query: 237 EVLKETQQCD 246 E LK+ + Sbjct: 346 EALKDLISPN 355 >gi|149372330|ref|ZP_01891518.1| chromosomal replication initiator protein [unidentified eubacterium SCB49] gi|149354720|gb|EDM43283.1| chromosomal replication initiator protein [unidentified eubacterium SCB49] Length = 476 Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats. Identities = 43/260 (16%), Positives = 90/260 (34%), Gaps = 37/260 (14%) Query: 10 FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66 F +P + E QL + ++ L + A + + P Sbjct: 126 FVIPGIRNV----KIESQL------NPNYNFENFLEGESNRLARSAGIAVANKPGGTSFN 175 Query: 67 -VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTR 108 +++ G G GK+ LA+ ++K ++ K+ + I Sbjct: 176 PLLVFGSVGLGKTHLAHAIGVDIKDKYPEKTVLYISAEKFVQQYSESVKKNNRNDFIHFY 235 Query: 109 ---KPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 ++++DI LL FHI N +HQ +++T+ PV L SR Sbjct: 236 QIIDVLIVDDIQLLSGKAGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMIDIEQRLLSRF 295 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 K +++ PD D +I + + + ++ ++ ++ E + + Sbjct: 296 KWGLSAELNHPDYDTRVAIIQNKLYRDGVEMPDDIVEFLANNIKTNIRELEGAIISLIAH 355 Query: 223 ALSRGMGITRSLAAEVLKET 242 + IT LA +++ Sbjct: 356 SSFNKKEITIDLAKKIVDNY 375 >gi|159896534|ref|YP_001542781.1| chromosomal replication initiation protein [Herpetosiphon aurantiacus ATCC 23779] gi|226735818|sp|A9B496|DNAA_HERA2 RecName: Full=Chromosomal replication initiator protein DnaA gi|159889573|gb|ABX02653.1| chromosomal replication initiator protein DnaA [Herpetosiphon aurantiacus ATCC 23779] Length = 472 Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats. Identities = 37/247 (14%), Positives = 88/247 (35%), Gaps = 31/247 (12%) Query: 27 QLFFSFPRC-----LGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKS 78 QL P + +V ++ A + P++ + L G G GK+ Sbjct: 120 QLPLGDPNRSSVLNPRYTFSSFIVGTSNRLAHAACMAVAEHPAQAYNPLFLYGGVGLGKT 179 Query: 79 CLANIWS--DKSRSTRFSNIAKSLDSILIDTRKPV------------------LLEDIDL 118 L R+ + + S + D + L++DI Sbjct: 180 HLLQAIGNYALDRNPEVNVLYVSSEKFTNDLINAIRRQQTEEFRIRYRNIDILLIDDIQF 239 Query: 119 LDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 + + + FH N++H +++++ P + L SR + +V + PD Sbjct: 240 IAGKEGTQEEFFHTFNTLHGAGKQIVLSSDRPPKAILTLEERLRSRFEWGLIVDVQNPDL 299 Query: 176 DFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235 + ++ Q+ + ++ ++ QR++ ++ E ++++ A +T +A Sbjct: 300 ETRTAILRAKGETLQVPVSSEVIDFLAQRIQSNIRELEGCLNRVIAYANLNRTPVTVEVA 359 Query: 236 AEVLKET 242 + L + Sbjct: 360 SAALADL 366 >gi|329944740|ref|ZP_08292819.1| replication initiator protein DnaA [Actinomyces sp. oral taxon 170 str. F0386] gi|328529876|gb|EGF56766.1| replication initiator protein DnaA [Actinomyces sp. oral taxon 170 str. F0386] Length = 380 Score = 115 bits (288), Expect = 8e-24, Method: Composition-based stats. Identities = 41/238 (17%), Positives = 87/238 (36%), Gaps = 31/238 (13%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRS- 90 + D + S+ A + P+R + + G SG GK+ L + +++ Sbjct: 34 NPRYTFDTYVTGSSNRFAHATALAVAEAPARAYNPLFIYGGSGLGKTHLLHAVGHYAQTL 93 Query: 91 ------------TRFSNIAKSLDSILIDTRKP------------VLLEDIDLLDFNDTQL 126 S+ + D + +L++DI L ++ L Sbjct: 94 NPGIRVKYVNSEVFVSDFIACVRDGNQDDGRMEGFKRRYREVDILLVDDIQFLQGKESTL 153 Query: 127 ---FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 FH NS+H +++T+ P + G L SR + + + PD + ++ Sbjct: 154 EEFFHTFNSLHSSGKQVVLTSDQPPKALGGLDERLRSRFEWGLLADVQPPDLETRIAILS 213 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + + + + YI R+ ++ E + ++ A + ++LA VLK+ Sbjct: 214 RKGTAEGLDLPFDVLEYIASRITTNIRELEGALIRVTAFASLNKQPVDQTLAEMVLKD 271 >gi|226952106|ref|ZP_03822570.1| DnaA family chromosomal replication initiator [Acinetobacter sp. ATCC 27244] gi|294651081|ref|ZP_06728418.1| DnaA-type chromosomal replication initiator [Acinetobacter haemolyticus ATCC 19194] gi|226837162|gb|EEH69545.1| DnaA family chromosomal replication initiator [Acinetobacter sp. ATCC 27244] gi|292823030|gb|EFF81896.1| DnaA-type chromosomal replication initiator [Acinetobacter haemolyticus ATCC 19194] Length = 232 Score = 114 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 85/228 (37%), Gaps = 21/228 (9%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 QL L D V + + + + G +G+GKS L + Sbjct: 2 RQLQLDIEPQLDARISDF-SGPGWGPVVDAVRQLHTGLVSRLYIYGGAGTGKSHLLSAIC 60 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKP---------VLLEDIDLLDF---NDTQLFHIINSI 133 D I SL ++L + V L+DID + +FH++N Sbjct: 61 DSYLELGRPAIKVSLLALLDAPIEAITALEFYDLVALDDIDAISGVPHWQKAVFHLMN-- 118 Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD---FLEKVIVKMFADRQ 190 ++ L+ ++R P+ + LPDL SRL A VK P+ + ++ + R Sbjct: 119 -NHEGQLVFSSRVAPIELKLELPDLQSRLTQAVSVK--APNGSSFVDRQALLQSVMTRRG 175 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238 I D+++ Y++ + + +++ + ++ + ++ Sbjct: 176 IHFDQQIVDYLLHNGPHQASILLQTLAQLEKMLKGEKTKLSNTTLKQI 223 >gi|229824635|ref|ZP_04450704.1| hypothetical protein GCWU000282_01982 [Catonella morbi ATCC 51271] gi|229786006|gb|EEP22120.1| hypothetical protein GCWU000282_01982 [Catonella morbi ATCC 51271] Length = 461 Score = 114 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 42/231 (18%), Positives = 80/231 (34%), Gaps = 29/231 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLAN-----IWSD 86 + + ++ A + A + P ++ G G GK+ L I S Sbjct: 127 NPNYTFSNFVIGEANKMAHAAALTVCDAPGETYNPYLIYGGVGLGKTHLMQAIGNEILSR 186 Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128 + + +S + I + +E+ ID+L +D + FH Sbjct: 187 QPHAKIKYATTESFTNDFITALEKNTIEEFRHMYRKIDVLLIDDIQFLSNKNKTREEFFH 246 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N ++ + ++MT P S L SR + I+ PD + ++ K ++ Sbjct: 247 TFNELYNHGKQIVMTCDRLPSSLSGLEDRLISRFAWGLQIDITPPDFETRIAILRKKASN 306 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 YI + ++ E + ++ A IT +LAAE L Sbjct: 307 ---EFSADTLQYIASHVNTNIRELEGALTRVTAYATIHNREITTNLAAEAL 354 >gi|332533700|ref|ZP_08409559.1| chromosomal replication initiator protein DnaA [Pseudoalteromonas haloplanktis ANT/505] gi|332036864|gb|EGI73325.1| chromosomal replication initiator protein DnaA [Pseudoalteromonas haloplanktis ANT/505] Length = 460 Score = 114 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 88/234 (37%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86 + D + + + A P V + G +G GK+ L + I ++ Sbjct: 126 KENYTFDSFVEGKSNQLAKAAATQVADNPGSAFNPVFIYGGTGLGKTHLLHAVGNGIMAN 185 Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128 K + ++ ++ + +E+ +D L +D + FH Sbjct: 186 KPDAKIVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALMIDDIQFFANKERSQEEFFH 245 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++ + + +++T+ +P L SR + I P+ + +++K Sbjct: 246 TFNALLEGNQQIILTSDRYPKEIEGVEDRLKSRFGWGLTIAIEPPELETRVAILMKKAQQ 305 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +I + ++A +I +++ ++ E ++++ A G I+ E L++ Sbjct: 306 SKINLPHEVAFFIAKKLRSNVRELEGALNRVIANANFTGRPISIDFVKEALRDL 359 >gi|89891636|ref|ZP_01203140.1| chromosomal DNA replication initiator DnaA [Flavobacteria bacterium BBFL7] gi|89516183|gb|EAS18846.1| chromosomal DNA replication initiator DnaA [Flavobacteria bacterium BBFL7] Length = 475 Score = 114 bits (287), Expect = 9e-24, Method: Composition-based stats. Identities = 44/260 (16%), Positives = 90/260 (34%), Gaps = 37/260 (14%) Query: 10 FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66 F +P + E QL + D L + A + + P Sbjct: 125 FIIPGIRNV----KIESQL------NPSYNFDSFLEGDSNRLARSAGMAVANKPGGTSFN 174 Query: 67 -VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTR 108 +++ G G GK+ LA+ ++K ++ K+ + I Sbjct: 175 PLLIFGGVGLGKTHLAHAIGVGIKENYPDKTALYISAEKFTQQYIESVRKNNRNDFIHFY 234 Query: 109 KPV---LLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 + V +++DI FHI N +HQ +++T+ PV L SR Sbjct: 235 QIVDVLIVDDIQFFAGKASTQDVFFHIFNHLHQNGKQVILTSDKKPVDMQDIEQRLLSRF 294 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 K +++ PD + +I + +D + Y+ ++ ++ E + + Sbjct: 295 KWGLSAELNHPDYETRVSIIKNKLYRDGVEMDDDIIHYLADNIKTNIRELEGAIISLIAH 354 Query: 223 ALSRGMGITRSLAAEVLKET 242 + IT LA ++++ Sbjct: 355 SSFNRKDITIDLARKIVENY 374 >gi|229118979|ref|ZP_04248324.1| Chromosomal replication initiator protein dnaA [Bacillus cereus Rock1-3] gi|228664504|gb|EEL20000.1| Chromosomal replication initiator protein dnaA [Bacillus cereus Rock1-3] Length = 446 Score = 114 bits (287), Expect = 9e-24, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 87/233 (37%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86 + D ++ S A + P++ + + G G GK+ L + + Sbjct: 112 NPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIEH 171 Query: 87 KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 + ++ + I++ + +L++DI L + + FH Sbjct: 172 NPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFH 231 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H+ +++++ P L SR + + I+ PD + ++ K Sbjct: 232 TFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 291 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I ++ YI +++ ++ E + ++ + I LAAE LK+ Sbjct: 292 EGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINADLAAEALKD 344 >gi|255283813|ref|ZP_05348368.1| DNA replication initiator protein, ATPase [Bryantella formatexigens DSM 14469] gi|255265696|gb|EET58901.1| DNA replication initiator protein, ATPase [Bryantella formatexigens DSM 14469] Length = 449 Score = 114 bits (287), Expect = 9e-24, Method: Composition-based stats. Identities = 44/244 (18%), Positives = 75/244 (30%), Gaps = 35/244 (14%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSD----- 86 + D +V A + P + + G G GK+ L + + Sbjct: 111 NPRYTFDTFVVGKNNNFAHAASLAVAESPGEIYNPLFIYGGVGLGKTHLMHSIAHFILER 170 Query: 87 ------------------KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQ 125 +N A S + +L++DI + + + Sbjct: 171 NPDTKVLYVTSETFTNEVIENIRSGNNTAMSKFREKYRSIDVLLIDDIQFIIGKESTQEE 230 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 FH N +H +++++ P L SR + + IS PD + ++ K Sbjct: 231 FFHTFNDLHSSGKQIIISSDKPPKEMSTLEERLKSRFEWGLIADISSPDYETRMAILRKR 290 Query: 186 FADRQIFIDKKLAAYIVQRME---RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ID + YI ++ R L A +V NL I A E LK Sbjct: 291 EELDGYHIDDDVIQYIATNIKSNIRELEGALNIVVAFGNL---NKRKIDLESAKEALKNI 347 Query: 243 QQCD 246 D Sbjct: 348 ISPD 351 >gi|15616642|ref|NP_239854.1| chromosomal replication initiator protein DnaA [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681401|ref|YP_002467786.1| chromosomal replication initiator protein DnaA [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219681957|ref|YP_002468341.1| chromosomal replication initiator protein DnaA [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471074|ref|ZP_05635073.1| chromosomal replication initiator protein DnaA [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11132243|sp|P57128|DNAA_BUCAI RecName: Full=Chromosomal replication initiator protein DnaA gi|254777890|sp|B8D8H7|DNAA_BUCA5 RecName: Full=Chromosomal replication initiator protein DnaA gi|254777891|sp|B8D6T1|DNAA_BUCAT RecName: Full=Chromosomal replication initiator protein DnaA gi|25299844|pir||D84931 chromosomal replication initiator protein dnaA [imported] - Buchnera sp. (strain APS) gi|10038705|dbj|BAB12740.1| chromosomal replication initiator protein dnaA [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219621690|gb|ACL29846.1| chromosomal replication initiator protein DnaA [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624244|gb|ACL30399.1| chromosomal replication initiator protein DnaA [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311085762|gb|ADP65844.1| chromosomal replication initiation protein [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086339|gb|ADP66420.1| chromosomal replication initiation protein [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311086914|gb|ADP66994.1| chromosomal replication initiation protein [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087505|gb|ADP67584.1| chromosomal replication initiation protein [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 454 Score = 114 bits (287), Expect = 9e-24, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 84/231 (36%), Gaps = 26/231 (11%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRF 93 + + + + + A P + L G +G GK+ L + ++ S ++ Sbjct: 122 RYNFQNFVEGKSNQLARSAAFQAARNPGNSYNPLFLYGATGLGKTHLLHAIGNEILSYKY 181 Query: 94 S--------------------NIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLFHII 130 N A + + +L++DI + + FH Sbjct: 182 DIKIIFMNSECFVQDMVKALKNNAIEKFKLYYRSVDALLIDDIQFFAHKERSQEEFFHTF 241 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N++ + + +++T+ +P L SR + I P+ + +++K Sbjct: 242 NTLIEGNQQIILTSDRYPKEINGVEDRLKSRFSWGLTIAIDPPEIETRVAILIKKADQNN 301 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + + ++A +I + + ++ E ++++ + IT A E L++ Sbjct: 302 VILSNEVAFFIAKHLRSNVRELEGALNRVILNSRFTHRAITVDFAREALQD 352 >gi|220933194|ref|YP_002512093.1| chromosomal replication initiator protein DnaA [Thioalkalivibrio sp. HL-EbGR7] gi|219994504|gb|ACL71106.1| chromosomal replication initiator protein DnaA [Thioalkalivibrio sp. HL-EbGR7] Length = 455 Score = 114 bits (287), Expect = 9e-24, Method: Composition-based stats. Identities = 39/251 (15%), Positives = 90/251 (35%), Gaps = 28/251 (11%) Query: 18 NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSG 74 + +P Q + + D+ + + + A + + L G G Sbjct: 106 SHRPAASSAQFTNNL--NPNFTFDNFVEGKSNQLARAASLQVAANVGLAYNPLFLYGGVG 163 Query: 75 SGKSCLAN-----IWSDKSRS--------TRFSNIAKSLDSILID-------TRKPVLLE 114 GK+ L + I + + + +++ K+L ID + +L++ Sbjct: 164 LGKTHLMHAIGNAILAHRPGAKVVYLHSERFVADMIKALQHNAIDEFKGYYRSVDALLID 223 Query: 115 DIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 DI + + FH N++ + +++T +P L SR V I Sbjct: 224 DIQFFAGKERSQEEFFHTFNALLESQQQVILTCDRYPKEVDGLEERLKSRFGWGLTVAIE 283 Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231 P+ + ++ + + ++A ++ +R+ ++ E + ++ A G IT Sbjct: 284 PPELETRVAILQRKAEQANTELPSEVAFFMAKRIRSNIRELEGALRRVVANAHFTGRPIT 343 Query: 232 RSLAAEVLKET 242 A E L++ Sbjct: 344 LDFAKEALRDL 354 >gi|75761786|ref|ZP_00741721.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74490719|gb|EAO54000.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 447 Score = 114 bits (287), Expect = 9e-24, Method: Composition-based stats. Identities = 42/267 (15%), Positives = 96/267 (35%), Gaps = 35/267 (13%) Query: 10 FFVPDKQKNDQ------PKNKEEQLFFSFP---RCLGISRDDLLVHSAIEQAVRLIDSWP 60 F +P Q + +N + P + D ++ S A + Sbjct: 97 FIIPQSQAEEDIDLPPVKRNPAQDDSAHLPQSMLNPKYTFDTFVIGSGNRFAHAASLAVA 156 Query: 61 SWPSRV---VILVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDTRK--- 109 P++ + + G G GK+ L + + + ++ + I++ + Sbjct: 157 EAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIEHNPNAKVVYLSSEKFTNEFINSIRDNK 216 Query: 110 ------------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 +L++DI L + + FH N++H+ +++++ P Sbjct: 217 AVDFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFHTFNALHEESKQIVISSDRPPKEIPTL 276 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 L SR + + I+ PD + ++ K + I ++ YI +++ ++ E Sbjct: 277 EDRLRSRFEWGLITDITPPDLETRIAILRKKAKAEGLDIPNEVMLYIANQIDSNIRELEG 336 Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKE 241 + ++ + I LAAE LK+ Sbjct: 337 ALIRVVAYSSLINKDINADLAAEALKD 363 >gi|311032256|ref|ZP_07710346.1| chromosomal replication initiation protein [Bacillus sp. m3-13] Length = 448 Score = 114 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 44/255 (17%), Positives = 96/255 (37%), Gaps = 30/255 (11%) Query: 13 PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VIL 69 P K K D + Q + + D ++ S A + P++ + + Sbjct: 95 PAKVKKDDDMIEIPQNMLN----PKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFI 150 Query: 70 VGPSGSGKSCLANIWS----DKSRSTRFSNIAKS----------LDSILIDTRK------ 109 G G GK+ L + + + + + ++ D+ +D R Sbjct: 151 YGGVGLGKTHLMHAIGHYVIEHNPAAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVD 210 Query: 110 PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 +L++DI L + + FH N++H+ +++++ P L SR + Sbjct: 211 VLLIDDIQFLAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGL 270 Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 + I+ PD + ++ K + I ++ YI +++ ++ E + ++ + Sbjct: 271 ITDITPPDLETRIAILRKKAKAEGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLI 330 Query: 227 GMGITRSLAAEVLKE 241 I LAAE LK+ Sbjct: 331 NKDINADLAAEALKD 345 >gi|229164440|ref|ZP_04292368.1| Chromosomal replication initiator protein dnaA [Bacillus cereus R309803] gi|228619045|gb|EEK75943.1| Chromosomal replication initiator protein dnaA [Bacillus cereus R309803] Length = 446 Score = 114 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 87/233 (37%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86 + D ++ S A + P++ + + G G GK+ L + + Sbjct: 112 NPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIEH 171 Query: 87 KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 + ++ + I++ + +L++DI L + + FH Sbjct: 172 NPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFH 231 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H+ +++++ P L SR + + I+ PD + ++ K Sbjct: 232 TFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 291 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I ++ YI +++ ++ E + ++ + I LAAE LK+ Sbjct: 292 EGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINADLAAEALKD 344 >gi|218895142|ref|YP_002443553.1| chromosomal replication initiator protein DnaA [Bacillus cereus G9842] gi|228905433|ref|ZP_04069388.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis IBL 4222] gi|228911329|ref|ZP_04075133.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis IBL 200] gi|229193740|ref|ZP_04320681.1| Chromosomal replication initiator protein dnaA [Bacillus cereus ATCC 10876] gi|226735775|sp|B7IS20|DNAA_BACC2 RecName: Full=Chromosomal replication initiator protein DnaA gi|218545184|gb|ACK97578.1| chromosomal replication initiator protein DnaA [Bacillus cereus G9842] gi|228589765|gb|EEK47643.1| Chromosomal replication initiator protein dnaA [Bacillus cereus ATCC 10876] gi|228848347|gb|EEM93197.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis IBL 200] gi|228854253|gb|EEM98956.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis IBL 4222] Length = 446 Score = 114 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 42/267 (15%), Positives = 96/267 (35%), Gaps = 35/267 (13%) Query: 10 FFVPDKQKNDQ------PKNKEEQLFFSFP---RCLGISRDDLLVHSAIEQAVRLIDSWP 60 F +P Q + +N + P + D ++ S A + Sbjct: 78 FIIPQSQAEEDIDLPPVKRNPAQDDSAHLPQSMLNPKYTFDTFVIGSGNRFAHAASLAVA 137 Query: 61 SWPSRV---VILVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDTRK--- 109 P++ + + G G GK+ L + + + ++ + I++ + Sbjct: 138 EAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIEHNPNAKVVYLSSEKFTNEFINSIRDNK 197 Query: 110 ------------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 +L++DI L + + FH N++H+ +++++ P Sbjct: 198 AVDFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFHTFNALHEESKQIVISSDRPPKEIPTL 257 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 L SR + + I+ PD + ++ K + I ++ YI +++ ++ E Sbjct: 258 EDRLRSRFEWGLITDITPPDLETRIAILRKKAKAEGLDIPNEVMLYIANQIDSNIRELEG 317 Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKE 241 + ++ + I LAAE LK+ Sbjct: 318 ALIRVVAYSSLINKDINADLAAEALKD 344 >gi|294619745|ref|ZP_06699150.1| chromosomal replication initiator protein DnaA [Enterococcus faecium E1679] gi|291594015|gb|EFF25484.1| chromosomal replication initiator protein DnaA [Enterococcus faecium E1679] Length = 444 Score = 114 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 83/234 (35%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW-----SD 86 + D ++ + A + P + G G GK+ L + Sbjct: 109 NPKYTFDTFVIGKGNQMAHAAALVVAEDPGSIYNPLFFYGGVGLGKTHLMHAIGHQMLQS 168 Query: 87 KSRSTRFSNIAKSLDSILIDTR---------------KPVLLEDIDLLDFND---TQLFH 128 + + +++ + I++ +L++DI + + FH Sbjct: 169 QPNAKVKYVSSETFANDFINSIQNKTAEEFRQEYRNVDLLLVDDIQFFAEKEATQEEFFH 228 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N+++ +++T+ P L SR V I+ PD + ++ K A Sbjct: 229 TFNALYNEGKQIVLTSDRLPNEIPKLQERLVSRFAWGLSVDITPPDLETRTAILRKKAAA 288 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ I +YI +++ ++ E + ++ A I+ SLAA+ LK Sbjct: 289 ERLEIPDDTLSYIAGQIDSNIRELEGALVRVQAFAAMNSEDISTSLAADALKTL 342 >gi|85857846|ref|YP_460048.1| chromosomal replication initiator protein [Syntrophus aciditrophicus SB] gi|85720937|gb|ABC75880.1| chromosomal replication initiator protein [Syntrophus aciditrophicus SB] Length = 457 Score = 114 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 87/233 (37%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWP---SRVVILVGPSGSGKSCLANIWSDKSRS- 90 S + +V S+ + A + P + + G G GK+ L N S S Sbjct: 120 NPNYSFERFVVGSSNQFAHAAAVAVAEQPAKNYNPLFIYGGVGLGKTHLLNAIGLLSMSI 179 Query: 91 -----TRFSNIAKSLDSILIDTR--------------KPVLLEDIDLLDFND---TQLFH 128 + + + ++ +++ R +L++DI + + + FH Sbjct: 180 YPDMNVVYVSAEEFMNELILSIRYDKMPQFREKFRNIDCLLMDDIQFIAGKERTQEEFFH 239 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H +++T+ FP L SR + + I P+ + ++ K + Sbjct: 240 TFNTLHDSGKQIVVTSDKFPKDIPNLEGRLRSRFEWGLIADIQPPEIETKIAILEKKAQE 299 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 I I +A YI E ++ E + ++ + G I L EVLK+ Sbjct: 300 NNIHIPTNVAYYISSHAESNIRELEGFLVRIAAYSSVTGRNIDLDLVKEVLKD 352 >gi|69246706|ref|ZP_00604074.1| chromosomal replication initiator protein, DnaA [Enterococcus faecium DO] gi|257878646|ref|ZP_05658299.1| chromosomal replication initiator protein [Enterococcus faecium 1,230,933] gi|257881312|ref|ZP_05660965.1| chromosomal replication initiator protein [Enterococcus faecium 1,231,502] gi|257885587|ref|ZP_05665240.1| chromosomal replication initiator protein [Enterococcus faecium 1,231,501] gi|257890529|ref|ZP_05670182.1| chromosomal replication initiator protein [Enterococcus faecium 1,231,410] gi|257893104|ref|ZP_05672757.1| chromosomal replication initiator protein [Enterococcus faecium 1,231,408] gi|258615270|ref|ZP_05713040.1| chromosomal replication initiation protein [Enterococcus faecium DO] gi|260558227|ref|ZP_05830423.1| chromosomal replication initiator protein [Enterococcus faecium C68] gi|261206917|ref|ZP_05921606.1| chromosomal replication initiator protein [Enterococcus faecium TC 6] gi|289566506|ref|ZP_06446930.1| chromosomal replication initiator protein DnaA [Enterococcus faecium D344SRF] gi|293553547|ref|ZP_06674174.1| chromosomal replication initiator protein DnaA [Enterococcus faecium E1039] gi|293563251|ref|ZP_06677703.1| chromosomal replication initiator protein DnaA [Enterococcus faecium E1162] gi|293569159|ref|ZP_06680465.1| chromosomal replication initiator protein DnaA [Enterococcus faecium E1071] gi|294616659|ref|ZP_06696430.1| chromosomal replication initiator protein DnaA [Enterococcus faecium E1636] gi|294623759|ref|ZP_06702587.1| chromosomal replication initiator protein DnaA [Enterococcus faecium U0317] gi|314940131|ref|ZP_07847311.1| replication initiator protein DnaA [Enterococcus faecium TX0133a04] gi|314943038|ref|ZP_07849842.1| replication initiator protein DnaA [Enterococcus faecium TX0133C] gi|314948156|ref|ZP_07851552.1| replication initiator protein DnaA [Enterococcus faecium TX0082] gi|314953430|ref|ZP_07856348.1| replication initiator protein DnaA [Enterococcus faecium TX0133A] gi|314993831|ref|ZP_07859167.1| replication initiator protein DnaA [Enterococcus faecium TX0133B] gi|314998144|ref|ZP_07863026.1| replication initiator protein DnaA [Enterococcus faecium TX0133a01] gi|68195120|gb|EAN09579.1| chromosomal replication initiator protein, DnaA [Enterococcus faecium DO] gi|257812874|gb|EEV41632.1| chromosomal replication initiator protein [Enterococcus faecium 1,230,933] gi|257816970|gb|EEV44298.1| chromosomal replication initiator protein [Enterococcus faecium 1,231,502] gi|257821443|gb|EEV48573.1| chromosomal replication initiator protein [Enterococcus faecium 1,231,501] gi|257826889|gb|EEV53515.1| chromosomal replication initiator protein [Enterococcus faecium 1,231,410] gi|257829483|gb|EEV56090.1| chromosomal replication initiator protein [Enterococcus faecium 1,231,408] gi|260075401|gb|EEW63707.1| chromosomal replication initiator protein [Enterococcus faecium C68] gi|260078545|gb|EEW66247.1| chromosomal replication initiator protein [Enterococcus faecium TC 6] gi|289161715|gb|EFD09591.1| chromosomal replication initiator protein DnaA [Enterococcus faecium D344SRF] gi|291588128|gb|EFF19970.1| chromosomal replication initiator protein DnaA [Enterococcus faecium E1071] gi|291590479|gb|EFF22217.1| chromosomal replication initiator protein DnaA [Enterococcus faecium E1636] gi|291596713|gb|EFF27936.1| chromosomal replication initiator protein DnaA [Enterococcus faecium U0317] gi|291602302|gb|EFF32527.1| chromosomal replication initiator protein DnaA [Enterococcus faecium E1039] gi|291604790|gb|EFF34272.1| chromosomal replication initiator protein DnaA [Enterococcus faecium E1162] gi|313587856|gb|EFR66701.1| replication initiator protein DnaA [Enterococcus faecium TX0133a01] gi|313591722|gb|EFR70567.1| replication initiator protein DnaA [Enterococcus faecium TX0133B] gi|313594533|gb|EFR73378.1| replication initiator protein DnaA [Enterococcus faecium TX0133A] gi|313598238|gb|EFR77083.1| replication initiator protein DnaA [Enterococcus faecium TX0133C] gi|313640636|gb|EFS05216.1| replication initiator protein DnaA [Enterococcus faecium TX0133a04] gi|313645410|gb|EFS09990.1| replication initiator protein DnaA [Enterococcus faecium TX0082] Length = 444 Score = 114 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 83/234 (35%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW-----SD 86 + D ++ + A + P + G G GK+ L + Sbjct: 109 NPKYTFDTFVIGKGNQMAHAAALVVAEDPGSIYNPLFFYGGVGLGKTHLMHAIGHQMLQS 168 Query: 87 KSRSTRFSNIAKSLDSILIDTR---------------KPVLLEDIDLLDFND---TQLFH 128 + + +++ + I++ +L++DI + + FH Sbjct: 169 QPNAKVKYVSSETFANDFINSIQNKTAEEFRQEYRNVDLLLVDDIQFFAEKEATQEEFFH 228 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N+++ +++T+ P L SR V I+ PD + ++ K A Sbjct: 229 TFNALYNEGKQIVLTSDRLPNEIPKLQERLVSRFAWGLSVDITPPDLETRTAILRKKAAA 288 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ I +YI +++ ++ E + ++ A I+ SLAA+ LK Sbjct: 289 ERLEIPDDTLSYIAGQIDSNIRELEGALVRVQAFAAMNSEDISTSLAADALKTL 342 >gi|42779082|ref|NP_976329.1| chromosomal replication initiation protein [Bacillus cereus ATCC 10987] gi|206975777|ref|ZP_03236688.1| chromosomal replication initiator protein DnaA [Bacillus cereus H3081.97] gi|217957582|ref|YP_002336124.1| chromosomal replication initiation protein [Bacillus cereus AH187] gi|222093775|ref|YP_002527822.1| chromosomal replication initiation protein [Bacillus cereus Q1] gi|229142238|ref|ZP_04270762.1| Chromosomal replication initiator protein dnaA [Bacillus cereus BDRD-ST26] gi|229199687|ref|ZP_04326330.1| Chromosomal replication initiator protein dnaA [Bacillus cereus m1293] gi|61212644|sp|Q73FK5|DNAA_BACC1 RecName: Full=Chromosomal replication initiator protein DnaA gi|226735777|sp|B7HPR7|DNAA_BACC7 RecName: Full=Chromosomal replication initiator protein DnaA gi|254777886|sp|B9IYG8|DNAA_BACCQ RecName: Full=Chromosomal replication initiator protein DnaA gi|42734997|gb|AAS38937.1| chromosomal replication initiator protein DnaA [Bacillus cereus ATCC 10987] gi|206745871|gb|EDZ57267.1| chromosomal replication initiator protein DnaA [Bacillus cereus H3081.97] gi|217064344|gb|ACJ78594.1| chromosomal replication initiator protein DnaA [Bacillus cereus AH187] gi|221237820|gb|ACM10530.1| chromosomal replication initiator protein DnaA [Bacillus cereus Q1] gi|228583782|gb|EEK41957.1| Chromosomal replication initiator protein dnaA [Bacillus cereus m1293] gi|228641256|gb|EEK97563.1| Chromosomal replication initiator protein dnaA [Bacillus cereus BDRD-ST26] gi|324323995|gb|ADY19255.1| chromosomal replication initiation protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 446 Score = 114 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 87/233 (37%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86 + D ++ S A + P++ + + G G GK+ L + + Sbjct: 112 NPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIEH 171 Query: 87 KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 + ++ + I++ + +L++DI L + + FH Sbjct: 172 NPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFH 231 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H+ +++++ P L SR + + I+ PD + ++ K Sbjct: 232 TFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 291 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I ++ YI +++ ++ E + ++ + I LAAE LK+ Sbjct: 292 EGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINADLAAEALKD 344 >gi|229035147|ref|ZP_04189093.1| Chromosomal replication initiator protein dnaA [Bacillus cereus AH1271] gi|228728213|gb|EEL79243.1| Chromosomal replication initiator protein dnaA [Bacillus cereus AH1271] Length = 446 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 87/233 (37%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86 + D ++ S A + P++ + + G G GK+ L + + Sbjct: 112 NPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIEH 171 Query: 87 KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 + ++ + I++ + +L++DI L + + FH Sbjct: 172 NPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFH 231 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H+ +++++ P L SR + + I+ PD + ++ K Sbjct: 232 TFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 291 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I ++ YI +++ ++ E + ++ + I LAAE LK+ Sbjct: 292 EGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINADLAAEALKD 344 >gi|288801133|ref|ZP_06406589.1| DNA replication initiator protein, ATPase [Prevotella sp. oral taxon 299 str. F0039] gi|288332067|gb|EFC70549.1| DNA replication initiator protein, ATPase [Prevotella sp. oral taxon 299 str. F0039] Length = 471 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 36/234 (15%), Positives = 77/234 (32%), Gaps = 27/234 (11%) Query: 40 RDDLLVHSAIEQAVR----LIDSWPSWPSRVVILVGPSGSGKSCL-----ANIWSDKSRS 90 D + + A+ + + + L GPSG GK+ L I Sbjct: 137 FDSFIRGESNAVALSVSLSIAEHPTRRQFNPMFLFGPSGCGKTHLINAIGLRIAKLYENK 196 Query: 91 TRFSNIAKSLDSILIDTR---------------KPVLLEDIDLLDFNDTQL---FHIINS 132 AK + + ++++DI L F+I N Sbjct: 197 KVLYVSAKDFEVQYTSAQYTNKINDFMHFYQNIDVLIVDDIQSWAGKKKTLETFFYIFNH 256 Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 + + +++ P L +R V ++ P+ ++ + Sbjct: 257 LFRNGKRIILACDRPPAELEGMEERLLTRFVWGVVEELGKPNIQLCIDILKSKVKRDGLS 316 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 I + YI +R S+ + E +++ + +++ G I + A E +K+ + D Sbjct: 317 IPDDVIRYIAERANGSIRYLEGVINTLYAFSINLGREIDIAFADERIKKLVKID 370 >gi|120401029|ref|YP_950858.1| chromosomal replication initiation protein [Mycobacterium vanbaalenii PYR-1] gi|166214685|sp|A1T102|DNAA_MYCVP RecName: Full=Chromosomal replication initiator protein DnaA gi|119953847|gb|ABM10852.1| chromosomal replication initiator protein DnaA [Mycobacterium vanbaalenii PYR-1] Length = 494 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 88/232 (37%), Gaps = 26/232 (11%) Query: 37 GISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS--- 90 + D ++ ++ A I P+ + + G SG GK+ L + + ++ Sbjct: 158 RYTFDTFVIGASNRFAHAASLAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFP 217 Query: 91 ------TRFSNIAKSLDSILIDTRKP-----------VLLEDIDLLDFND---TQLFHII 130 + L D R+ +L++DI ++ D + FH Sbjct: 218 GMRVKYVSTEEFTNDFINSLRDDRRASFKRTYRDIDVLLVDDIQFIEGKDGIQEEFFHTF 277 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N++H + +++++ P L +R + + + P+ + ++ K + Sbjct: 278 NTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMDR 337 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + I R+ER++ E + ++ A I +SLA VL++ Sbjct: 338 LDVPGDVLELIASRIERNIRELEGALIRVTAFASLNKTPIDKSLAEIVLRDL 389 >gi|326335802|ref|ZP_08201982.1| replication initiation protein DnaA [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692041|gb|EGD34000.1| replication initiation protein DnaA [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 475 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 79/234 (33%), Gaps = 27/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAV----RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR- 89 + D+ + + A + + + G G GK+ LA+ ++ + Sbjct: 139 NPNKNFDNFIEGESNRLARSAGMAITQRPGGTSFNPLFIFGGVGLGKTHLAHAIGNEIQE 198 Query: 90 -------------------STRFSNIAKSLDSILIDTRKPVLLEDIDLLD---FNDTQLF 127 + N ++ ++++++ F Sbjct: 199 KFPKKKILYIEAEDFTKQYAVAAKNNNRTDFIHFYQQIDVLIIDNVQFFASKQGTQDVFF 258 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 I N +HQ L++T+ PV L SR K ++ PD + ++ + Sbjct: 259 QIFNHLHQNGKQLILTSDKAPVDIQDVEQRLLSRFKWGLSAELQAPDYQMRKNILNSILY 318 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + + +++ YI Q ++ ++ E + + AL IT LA + + + Sbjct: 319 RDGVEMSEEIVDYIAQNVKTNIRELEGVNTSLMAEALFNKKEITLDLAKKAVDK 372 >gi|229099916|ref|ZP_04230839.1| Chromosomal replication initiator protein dnaA [Bacillus cereus Rock3-29] gi|228683531|gb|EEL37486.1| Chromosomal replication initiator protein dnaA [Bacillus cereus Rock3-29] Length = 446 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 87/233 (37%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86 + D ++ S A + P++ + + G G GK+ L + + Sbjct: 112 NPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIEH 171 Query: 87 KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 + ++ + I++ + +L++DI L + + FH Sbjct: 172 NPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFH 231 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H+ +++++ P L SR + + I+ PD + ++ K Sbjct: 232 TFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 291 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I ++ YI +++ ++ E + ++ + I LAAE LK+ Sbjct: 292 EGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLISKDINADLAAEALKD 344 >gi|148927276|ref|ZP_01810846.1| chromosomal replication initiator protein DnaA [candidate division TM7 genomosp. GTL1] gi|147887335|gb|EDK72789.1| chromosomal replication initiator protein DnaA [candidate division TM7 genomosp. GTL1] Length = 486 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 83/222 (37%), Gaps = 27/222 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI------WS 85 + + +V S + A + P R + + G G GK+ L + Sbjct: 153 NPRYTFETYIVGSNNDLAYAACQAVAKSPGRKYNPIFIYGGVGLGKTHLIQAVGNEIAHT 212 Query: 86 DKSRSTRFSNIAKSLDSIL-------------IDTRKPVLLEDIDLLDFND---TQLFHI 129 D++ + N ++ L ++++DI + + + FH Sbjct: 213 DRAARILYVNTETFVNEFLEYIRFKKKGFSDRYRNVDVLIIDDIQFIAGKEKTQEEFFHT 272 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N +HQ + +++++ P S L SR + + I +PD + +I + Sbjct: 273 FNVLHQANKQIIISSDKPPRSIPTLTERLRSRFEWGMAIDIQIPDFETRSAIIETKASQA 332 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231 I + ++ Y+ ++ ++ E ++++ LA G+T Sbjct: 333 GIELPRETVEYMASNIKTNIRELEGALNQL--LAFCEMRGVT 372 >gi|119475236|ref|ZP_01615589.1| chromosomal replication initiation protein [marine gamma proteobacterium HTCC2143] gi|119451439|gb|EAW32672.1| chromosomal replication initiation protein [marine gamma proteobacterium HTCC2143] Length = 479 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 79/233 (33%), Gaps = 26/233 (11%) Query: 36 LGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLAN-----IWSDK 87 + D + + + A + + L G G GK+ L + I K Sbjct: 146 ENYTFDTFVEGKSNQLARAASIQVAENTGGAYNPLFLYGGVGLGKTHLMHAVGNAIIQRK 205 Query: 88 SRSTRFSNIAKSLDSILIDTR---------------KPVLLEDIDLLDFND---TQLFHI 129 + ++ + ++ +L++DI + + FH Sbjct: 206 PNAKVVYLHSERFVADMVKALQLNAINEFKRYYRSVDALLIDDIQFFAGKERSQEEFFHT 265 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N++ + +++T +P L SR V + P+ + +++K Sbjct: 266 FNALLEGGQQMILTCDRYPKEINGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAEQA 325 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +I + A +I QR+ ++ E + ++ A G I L E LK+ Sbjct: 326 KIELPADAAFFIAQRIRSNVRELEGALKRVIASAHFMGREIDIELIRESLKDL 378 >gi|160878163|ref|YP_001557131.1| chromosomal replication initiator protein DnaA [Clostridium phytofermentans ISDg] gi|226735795|sp|A9KPP1|DNAA_CLOPH RecName: Full=Chromosomal replication initiator protein DnaA gi|160426829|gb|ABX40392.1| chromosomal replication initiator protein DnaA [Clostridium phytofermentans ISDg] Length = 453 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 42/240 (17%), Positives = 88/240 (36%), Gaps = 28/240 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLAN-----IWSD 86 + D +V + A + P+ + + G G GK+ L + I Sbjct: 114 NPRYTFDTFVVGANNNLAHAASLAVAESPAEIYNPLFIYGGVGLGKTHLMHSIAHYILEQ 173 Query: 87 KSRSTRFSNIAKSLDSILIDTRK-----------------PVLLEDIDLLDFND---TQL 126 S ++ + LI++ + +L++DI + + + Sbjct: 174 NPNSKVLYVTSEKFTNELIESIRNADTTPTEFREKYRNIDVLLIDDIQFIIGKERTQEEF 233 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH N++H+ +++++ P L SR + V I PD + ++ K Sbjct: 234 FHTFNTLHESKKQIIISSDKPPKDILTLEERLRSRFEWGLTVDIQSPDYETRMAILKKKE 293 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + ID ++ YI ++ ++ E + K+ L+ + + LA E LK+ D Sbjct: 294 ELDCLTIDDEVMKYIASNIKSNIRELEGALTKIVALSRLKKKEVDVILAEEALKDLISPD 353 >gi|227550640|ref|ZP_03980689.1| DNA-directed DNA replication initiator protein [Enterococcus faecium TX1330] gi|257888095|ref|ZP_05667748.1| chromosomal replication initiator protein [Enterococcus faecium 1,141,733] gi|257896287|ref|ZP_05675940.1| chromosomal replication initiator protein [Enterococcus faecium Com12] gi|257899271|ref|ZP_05678924.1| chromosomal replication initiator protein [Enterococcus faecium Com15] gi|293379368|ref|ZP_06625512.1| chromosomal replication initiator protein DnaA [Enterococcus faecium PC4.1] gi|293572718|ref|ZP_06683682.1| chromosomal replication initiator protein DnaA [Enterococcus faecium E980] gi|227180241|gb|EEI61213.1| DNA-directed DNA replication initiator protein [Enterococcus faecium TX1330] gi|257824149|gb|EEV51081.1| chromosomal replication initiator protein [Enterococcus faecium 1,141,733] gi|257832852|gb|EEV59273.1| chromosomal replication initiator protein [Enterococcus faecium Com12] gi|257837183|gb|EEV62257.1| chromosomal replication initiator protein [Enterococcus faecium Com15] gi|291607210|gb|EFF36568.1| chromosomal replication initiator protein DnaA [Enterococcus faecium E980] gi|292641891|gb|EFF60057.1| chromosomal replication initiator protein DnaA [Enterococcus faecium PC4.1] Length = 444 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 83/234 (35%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW-----SD 86 + D ++ + A + P + G G GK+ L + Sbjct: 109 NPKYTFDTFVIGKGNQMAHAAALVVAEDPGSIYNPLFFYGGVGLGKTHLMHAIGHQMLQS 168 Query: 87 KSRSTRFSNIAKSLDSILIDTR---------------KPVLLEDIDLLDFND---TQLFH 128 + + +++ + I++ +L++DI + + FH Sbjct: 169 QPNAKVKYVSSETFANDFINSIQNKTAEEFRQEYRNVDLLLVDDIQFFAEKEATQEEFFH 228 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N+++ +++T+ P L SR V I+ PD + ++ K A Sbjct: 229 TFNALYNEGKQIVLTSDRLPNEIPKLQERLVSRFAWGLSVDITPPDLETRTAILRKKAAA 288 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ I +YI +++ ++ E + ++ A I+ SLAA+ LK Sbjct: 289 ERLEIPDDTLSYIAGQIDSNIRELEGALVRVQAFAAMNSEDISTSLAADALKTL 342 >gi|301051742|ref|YP_003789953.1| chromosomal replication initiation protein [Bacillus anthracis CI] gi|300373911|gb|ADK02815.1| chromosomal replication initiation protein [Bacillus cereus biovar anthracis str. CI] Length = 446 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 87/233 (37%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86 + D ++ S A + P++ + + G G GK+ L + + Sbjct: 112 NPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIEH 171 Query: 87 KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 + ++ + I++ + +L++DI L + + FH Sbjct: 172 NPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFH 231 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H+ +++++ P L SR + + I+ PD + ++ K Sbjct: 232 TFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 291 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I ++ YI +++ ++ E + ++ + I LAAE LK+ Sbjct: 292 EGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINADLAAEALKD 344 >gi|149198967|ref|ZP_01876008.1| chromosomal replication initiation protein [Lentisphaera araneosa HTCC2155] gi|149137962|gb|EDM26374.1| chromosomal replication initiation protein [Lentisphaera araneosa HTCC2155] Length = 470 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 40/253 (15%), Positives = 94/253 (37%), Gaps = 32/253 (12%) Query: 16 QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGP 72 ++ KE + +FP S + +V + A + P + + + G Sbjct: 116 RRRSTETPKELKAPNNFPSSDRYSFKNFVVGDSNRLAFATSKAVSESPGFSFNPLFIYGS 175 Query: 73 SGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE---------------DID 117 SG GKS L + + ++ N ++ + + + ++ ++D Sbjct: 176 SGLGKSHLLHAIAQET---LSHNPYHRIEYLSAEEFSNIFIDSIKNQDGHNFRKRFRNVD 232 Query: 118 LLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 +L +D + FH N+++ + +++T+ P L SR + Sbjct: 233 ILLLDDVQFLKNKTKTQEEFFHTFNALYSLNKQIVLTSDCQPHELDGLEKRLVSRFEHGQ 292 Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 +V + P+ + ++ + I ++ +I ++ + E + ++ A + Sbjct: 293 IVDVLKPEFETRVAILRLKRDSMNVHIPNEVLDFIASNIKSHIRKLEGALVRLVTYASTM 352 Query: 227 GMGITRSLAAEVL 239 G + SLA EVL Sbjct: 353 GYEVNVSLAREVL 365 >gi|332978505|gb|EGK15216.1| regulatory inactivation of DnaA Hda protein [Psychrobacter sp. 1501(2011)] Length = 270 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 33/206 (16%), Positives = 74/206 (35%), Gaps = 14/206 (6%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL + S D V + + + G + +GK+ L + + Sbjct: 4 QLSLNLEVRRDASLSDF-SGPGWSTLVDAVRQLHVGLIGQMYIYGSAATGKTHLLSAICE 62 Query: 87 KSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFHIINSIH 134 S I SL +L +++ V ++D++ + N +FH+IN Sbjct: 63 SYMEMDKSAICLSLKELLNTDVGVLASLESFDLVAIDDLEAIRGNREWQEAIFHLINRSR 122 Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL-PDDDFLEKVIVKMFADRQIFI 193 + L+ A+T LPDL +RL + ++ D + ++ + R Sbjct: 123 EGQGQLIFAAKTPATELPFELPDLLTRLIQSPAFRVPEGHDIADRKAMLESVMRRRGWQF 182 Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKM 219 D ++ +++ + +++ + Sbjct: 183 DPRITEHLLNEGPHRIGGMLDILNVI 208 >gi|302336549|ref|YP_003801755.1| chromosomal replication initiator protein DnaA [Spirochaeta smaragdinae DSM 11293] gi|301633734|gb|ADK79161.1| chromosomal replication initiator protein DnaA [Spirochaeta smaragdinae DSM 11293] Length = 471 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 40/253 (15%), Positives = 87/253 (34%), Gaps = 33/253 (13%) Query: 16 QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGP 72 KND PK + + ++ ++ A I P ++ G Sbjct: 120 AKNDPPKKHPD-------LRPDYTFENFVIGENNTLAANACMAISKNPGTAYNPCLIYGG 172 Query: 73 SGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDTR---------------KPVL 112 G GK+ L W+ A++ + I+ +L Sbjct: 173 VGLGKTHLIQSIGNYAWAHNPDIKIAYVTAETFTNEFIEAIHHNKNHQFKNKYRKVDILL 232 Query: 113 LEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 ++DI L +LFH N++++ + L+ T L SR + V Sbjct: 233 IDDIHFLQEKTGTQEELFHTFNALYETNKQLVFTCDRPVSELKQLTDRLRSRFERGLNVD 292 Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229 + P + ++ + ++++ ID ++ I + + ++ E + ++ A Sbjct: 293 LQAPAFETRFAILKQKVEEKKVPIDDEVIELICRNVTTNVRDLEAALTRLIAYADLLHKK 352 Query: 230 ITRSLAAEVLKET 242 +T +A + LK+ Sbjct: 353 VTLDIARQQLKDV 365 >gi|90019650|ref|YP_525477.1| chromosomal replication initiation protein [Saccharophagus degradans 2-40] gi|122996680|sp|Q21PW4|DNAA_SACD2 RecName: Full=Chromosomal replication initiator protein DnaA gi|89949250|gb|ABD79265.1| chromosomal replication initiator protein DnaA [Saccharophagus degradans 2-40] Length = 524 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 36/235 (15%), Positives = 80/235 (34%), Gaps = 28/235 (11%) Query: 35 CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI-----WS 85 D+ +V + A ++ ++ P + + G G GK+ L + Sbjct: 190 NPTFIFDNFVVGKSNQLGLAAATQVAEN-PGGSYNPLFIYGGVGLGKTHLMHAVGNALCV 248 Query: 86 DKSRSTRFSNIAKSLDSILIDT---------------RKPVLLEDIDLLDFND---TQLF 127 K + ++ + ++ +L++DI + + F Sbjct: 249 RKPGAKVVYLHSERFVADMVKALQLNAINDFKRYYRSVDALLIDDIQFFAGKERSQEEFF 308 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + +++T +P L SR V I P+ + ++ + Sbjct: 309 HTFNALLEGGQQIILTCDRYPKEINGLEERLKSRFGWGLTVAIEPPELETRVAILKRKAE 368 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + A +I QR+ ++ E + ++ A G I+ L E LK+ Sbjct: 369 QVGAPLPNDAAFFIAQRIRSNVRELEGALKRVIANAHFTGRDISVELVREALKDL 423 >gi|30018279|ref|NP_829910.1| chromosomal replication initiation protein [Bacillus cereus ATCC 14579] gi|206970479|ref|ZP_03231432.1| chromosomal replication initiator protein DnaA [Bacillus cereus AH1134] gi|218235327|ref|YP_002364856.1| chromosomal replication initiation protein [Bacillus cereus B4264] gi|228924234|ref|ZP_04087505.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228955739|ref|ZP_04117734.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228961753|ref|ZP_04123356.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar pakistani str. T13001] gi|229051158|ref|ZP_04194702.1| Chromosomal replication initiator protein dnaA [Bacillus cereus AH676] gi|229072954|ref|ZP_04206150.1| Chromosomal replication initiator protein dnaA [Bacillus cereus F65185] gi|229112902|ref|ZP_04242433.1| Chromosomal replication initiator protein dnaA [Bacillus cereus Rock1-15] gi|229130735|ref|ZP_04259688.1| Chromosomal replication initiator protein dnaA [Bacillus cereus BDRD-Cer4] gi|229148039|ref|ZP_04276378.1| Chromosomal replication initiator protein dnaA [Bacillus cereus BDRD-ST24] gi|229153648|ref|ZP_04281824.1| Chromosomal replication initiator protein dnaA [Bacillus cereus m1550] gi|229181735|ref|ZP_04309058.1| Chromosomal replication initiator protein dnaA [Bacillus cereus 172560W] gi|296500839|ref|YP_003662539.1| chromosomal replication initiation protein [Bacillus thuringiensis BMB171] gi|38257412|sp|Q81JD5|DNAA_BACCR RecName: Full=Chromosomal replication initiator protein DnaA gi|226735776|sp|B7HIH4|DNAA_BACC4 RecName: Full=Chromosomal replication initiator protein DnaA gi|29893819|gb|AAP07111.1| Chromosomal replication initiator protein dnaA [Bacillus cereus ATCC 14579] gi|206735056|gb|EDZ52225.1| chromosomal replication initiator protein DnaA [Bacillus cereus AH1134] gi|218163284|gb|ACK63276.1| chromosomal replication initiator protein DnaA [Bacillus cereus B4264] gi|228601768|gb|EEK59266.1| Chromosomal replication initiator protein dnaA [Bacillus cereus 172560W] gi|228629834|gb|EEK86487.1| Chromosomal replication initiator protein dnaA [Bacillus cereus m1550] gi|228635464|gb|EEK91955.1| Chromosomal replication initiator protein dnaA [Bacillus cereus BDRD-ST24] gi|228652752|gb|EEL08637.1| Chromosomal replication initiator protein dnaA [Bacillus cereus BDRD-Cer4] gi|228670581|gb|EEL25894.1| Chromosomal replication initiator protein dnaA [Bacillus cereus Rock1-15] gi|228710200|gb|EEL62178.1| Chromosomal replication initiator protein dnaA [Bacillus cereus F65185] gi|228722221|gb|EEL73622.1| Chromosomal replication initiator protein dnaA [Bacillus cereus AH676] gi|228797947|gb|EEM44957.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar pakistani str. T13001] gi|228803967|gb|EEM50591.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228835452|gb|EEM80822.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|296321891|gb|ADH04819.1| chromosomal replication initiation protein [Bacillus thuringiensis BMB171] Length = 446 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 87/233 (37%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86 + D ++ S A + P++ + + G G GK+ L + + Sbjct: 112 NPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIEH 171 Query: 87 KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 + ++ + I++ + +L++DI L + + FH Sbjct: 172 NPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFH 231 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H+ +++++ P L SR + + I+ PD + ++ K Sbjct: 232 TFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 291 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I ++ YI +++ ++ E + ++ + I LAAE LK+ Sbjct: 292 EGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINADLAAEALKD 344 >gi|225862058|ref|YP_002747436.1| chromosomal replication initiator protein DnaA [Bacillus cereus 03BB102] gi|254777885|sp|C1ES08|DNAA_BACC3 RecName: Full=Chromosomal replication initiator protein DnaA gi|225789460|gb|ACO29677.1| chromosomal replication initiator protein DnaA [Bacillus cereus 03BB102] Length = 446 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 87/233 (37%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86 + D ++ S A + P++ + + G G GK+ L + + Sbjct: 112 NPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIEH 171 Query: 87 KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 + ++ + I++ + +L++DI L + + FH Sbjct: 172 NPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFH 231 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H+ +++++ P L SR + + I+ PD + ++ K Sbjct: 232 TFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 291 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I ++ YI +++ ++ E + ++ + I LAAE LK+ Sbjct: 292 EGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINADLAAEALKD 344 >gi|323703942|ref|ZP_08115572.1| chromosomal replication initiator protein DnaA [Desulfotomaculum nigrificans DSM 574] gi|323531100|gb|EGB21009.1| chromosomal replication initiator protein DnaA [Desulfotomaculum nigrificans DSM 574] Length = 442 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 38/238 (15%), Positives = 90/238 (37%), Gaps = 27/238 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW------- 84 + D ++ ++ A + P+ + + G G GK+ L + Sbjct: 106 NPRYTFDTFVIGNSNRFAHAASLAVAESPAKAYNPLFIYGGVGLGKTHLMHAIGHYILQN 165 Query: 85 ----------SDKSRSTRFSNIAKSLDSILIDTRKP---VLLEDIDLLDFND---TQLFH 128 S+K + ++I + + +L++DI L+ + + FH Sbjct: 166 NPGLKVAYCTSEKFTNELINSIRDDQTEEFRNKYRSMDILLIDDIQFLEKKERTQEEFFH 225 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++++ + +++++ P L SR + + I PD + ++ K Sbjct: 226 TFNTLYEANKQIIISSDRPPKEIATLEDRLRSRFEWGLITDIQSPDYETRVAILRKKAQL 285 Query: 189 RQIF-IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 + I + A+I +++ ++ E + ++ + T +LAAEVLK+ Sbjct: 286 EGLSNIPDETIAFIADKIQSNIRELEGALIRVTAFSNLEKREATPALAAEVLKDVISP 343 >gi|94967032|ref|YP_589080.1| chromosomal replication initiator protein DnaA [Candidatus Koribacter versatilis Ellin345] gi|94549082|gb|ABF39006.1| chromosomal replication initiator protein DnaA [Candidatus Koribacter versatilis Ellin345] Length = 461 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 40/248 (16%), Positives = 83/248 (33%), Gaps = 30/248 (12%) Query: 24 KEEQLFFSFP----RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSG 76 + +Q F + D+ + + A + PS+ + L G G G Sbjct: 112 RVQQARFDWDGAAQLNPKYIFDNFVTGPGNQFAHAASRAVADRPSKTYNPLFLYGGVGMG 171 Query: 77 KSCLANIWSD-------KSRSTRFSNIAKSLDSILI-------------DTRKPVLLEDI 116 K+ L + S+ + D I T +L++DI Sbjct: 172 KTHLMQAIGHTIKRNNPEHSICYVSSEKFTNDMINSVRYDKMTSFRERYRTVDVLLIDDI 231 Query: 117 DLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 + + + FH N++H+ L++ + P L SR + + I P Sbjct: 232 QFIARKERTQEEFFHTFNALHEQQKQLVIASDRPPKELAEIEDRLRSRFEWGLIADIQPP 291 Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233 D + ++ K + + +A +I + ++ E + ++ + G + Sbjct: 292 DLETKVAILQKKAESERTQLPTDVALFIASNIRSNVRELEGALIRLVAYSSLTGGELNLM 351 Query: 234 LAAEVLKE 241 A +VLK Sbjct: 352 TAQQVLKN 359 >gi|319899889|ref|YP_004159617.1| chromosomal replication initiator protein DnaA [Bacteroides helcogenes P 36-108] gi|319414920|gb|ADV42031.1| chromosomal replication initiator protein DnaA [Bacteroides helcogenes P 36-108] Length = 463 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 39/242 (16%), Positives = 85/242 (35%), Gaps = 28/242 (11%) Query: 33 PR-CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV----VILVGPSGSGKSCLANIWSDK 87 P + + + + + + + ++ P++ + L G SG GK+ LAN K Sbjct: 124 PHLNPEYNFETFIEGYSNKLSRSVAEAVALNPAKTIFNPLFLYGASGVGKTHLANAIGTK 183 Query: 88 -------SRSTRFSNIA---KSLDSILIDTRKPVL-------------LEDIDLLDFNDT 124 R S + DS+ +T + +++ + Sbjct: 184 IKELYPEKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQTIDILIIDDIQEFAGVTKTQN 243 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 FHI N +HQ L++T+ PV L +R K V ++ P + + ++ Sbjct: 244 TFFHIFNHLHQNGKQLILTSDRAPVLLQGMEERLITRFKWGMVAELEKPTVELRKNILRN 303 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 + ++ YI + + S+ E +V + + I L ++++ Sbjct: 304 KIHRDGLQFPPEVIDYIAENVGDSVRDLEGIVISIMAHSTIYNKEIDLELTQRIVRKVVN 363 Query: 245 CD 246 + Sbjct: 364 SE 365 >gi|228988718|ref|ZP_04148803.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229159050|ref|ZP_04287106.1| Chromosomal replication initiator protein dnaA [Bacillus cereus ATCC 4342] gi|228624469|gb|EEK81240.1| Chromosomal replication initiator protein dnaA [Bacillus cereus ATCC 4342] gi|228771030|gb|EEM19511.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 446 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 87/233 (37%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86 + D ++ S A + P++ + + G G GK+ L + + Sbjct: 112 NPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIEH 171 Query: 87 KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 + ++ + I++ + +L++DI L + + FH Sbjct: 172 NPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFH 231 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H+ +++++ P L SR + + I+ PD + ++ K Sbjct: 232 TFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 291 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I ++ YI +++ ++ E + ++ + I LAAE LK+ Sbjct: 292 EGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINADLAAEALKD 344 >gi|258590834|emb|CBE67129.1| Chromosomal replication initiator protein dnaA [NC10 bacterium 'Dutch sediment'] Length = 452 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 37/238 (15%), Positives = 85/238 (35%), Gaps = 30/238 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWP---SWPSRVVILVGPSGSGKSCLANIWSDKS--- 88 + ++ +V S+ + A + S + + G G GK+ L + Sbjct: 118 NPKYTFENFVVGSSSQFAHAGCLAVAEQLSKAYNPLFIYGGVGLGKTHLLHAIGHLVLKR 177 Query: 89 -------------------RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQL 126 + RF + + + + +L++DI + + + Sbjct: 178 NARLKLSYVSSEKFTNDLINAIRFDSTGEFRNR--YRSLDLLLIDDIQFIAGKERTQEEF 235 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH N ++ +++++ + P L SR + + I PD + +I K Sbjct: 236 FHTFNELYDSSKQIVISSDSLPREIPTLEERLRSRFEWGLIADIQPPDLETKAAIIRKKA 295 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 + + ++ +I + ++ ++ E + ++ A G I+ LA E LKE Sbjct: 296 QAEGVRLPDDVSLFIAKNVQSNIRELEGSLVRLVAYASMTGREISLELAQETLKELNA 353 >gi|154174998|ref|YP_001407305.1| chromosomal replication initiation protein [Campylobacter curvus 525.92] gi|166201871|sp|A7GVR3|DNAA_CAMC5 RecName: Full=Chromosomal replication initiator protein DnaA gi|112803521|gb|EAU00865.1| chromosomal replication initiator protein DnaA [Campylobacter curvus 525.92] Length = 436 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 39/232 (16%), Positives = 84/232 (36%), Gaps = 24/232 (10%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN---IWSDKS 88 + ++ +V + E A + P ++ + + GP+G GK+ L + Sbjct: 102 NPAYTFENFVVGGSNEYAFLSAKAASEQPGKIYNPLFIYGPTGLGKTHLLQSVGNFCLNQ 161 Query: 89 RSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHII 130 ++ + +L++D+ L D + FH Sbjct: 162 GKVVICVTSEQFMTDFTYNINNHSMERFREKYRNCDVLLIDDVQFLGKTDKIQEEFFHTF 221 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N +H + ++MT+ P L +R + + I+ P+ D +I K + Sbjct: 222 NELHSKNGQIVMTSDRQPKLLKGFEDRLRTRFEWGIMADITPPELDTKIAIIQKKCEFDK 281 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 I+++K + YI M ++ E + ++ A IT A V+++ Sbjct: 282 IYLNKDVINYIATNMGDNIREIESAIINLNAYANLMRQEITLDFAKNVMRDL 333 >gi|30260196|ref|NP_842573.1| chromosomal replication initiation protein [Bacillus anthracis str. Ames] gi|47525255|ref|YP_016604.1| chromosomal replication initiation protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49183040|ref|YP_026292.1| chromosomal replication initiation protein [Bacillus anthracis str. Sterne] gi|49479264|ref|YP_034361.1| chromosomal replication initiation protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52145208|ref|YP_081620.1| chromosomal replication initiation protein [Bacillus cereus E33L] gi|65317469|ref|ZP_00390428.1| COG0593: ATPase involved in DNA replication initiation [Bacillus anthracis str. A2012] gi|165873037|ref|ZP_02217658.1| chromosomal replication initiator protein DnaA [Bacillus anthracis str. A0488] gi|167635044|ref|ZP_02393361.1| chromosomal replication initiator protein DnaA [Bacillus anthracis str. A0442] gi|167641739|ref|ZP_02399982.1| chromosomal replication initiator protein DnaA [Bacillus anthracis str. A0193] gi|170689462|ref|ZP_02880652.1| chromosomal replication initiator protein DnaA [Bacillus anthracis str. A0465] gi|170707519|ref|ZP_02897972.1| chromosomal replication initiator protein DnaA [Bacillus anthracis str. A0389] gi|177655268|ref|ZP_02936822.1| chromosomal replication initiator protein DnaA [Bacillus anthracis str. A0174] gi|190569280|ref|ZP_03022174.1| chromosomal replication initiator protein DnaA [Bacillus anthracis Tsiankovskii-I] gi|196036095|ref|ZP_03103495.1| chromosomal replication initiator protein DnaA [Bacillus cereus W] gi|196041966|ref|ZP_03109253.1| chromosomal replication initiator protein DnaA [Bacillus cereus NVH0597-99] gi|196045507|ref|ZP_03112738.1| chromosomal replication initiator protein DnaA [Bacillus cereus 03BB108] gi|218901207|ref|YP_002449041.1| chromosomal replication initiator protein DnaA [Bacillus cereus AH820] gi|227812679|ref|YP_002812688.1| chromosomal replication initiator protein DnaA [Bacillus anthracis str. CDC 684] gi|228918101|ref|ZP_04081629.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228930495|ref|ZP_04093495.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228949211|ref|ZP_04111479.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229094600|ref|ZP_04225667.1| Chromosomal replication initiator protein dnaA [Bacillus cereus Rock3-42] gi|229124992|ref|ZP_04254166.1| Chromosomal replication initiator protein dnaA [Bacillus cereus 95/8201] gi|229187718|ref|ZP_04314854.1| Chromosomal replication initiator protein dnaA [Bacillus cereus BGSC 6E1] gi|229600569|ref|YP_002864658.1| chromosomal replication initiator protein DnaA [Bacillus anthracis str. A0248] gi|254687070|ref|ZP_05150928.1| chromosomal replication initiation protein [Bacillus anthracis str. CNEVA-9066] gi|254724147|ref|ZP_05185932.1| chromosomal replication initiation protein [Bacillus anthracis str. A1055] gi|254735164|ref|ZP_05192874.1| chromosomal replication initiation protein [Bacillus anthracis str. Western North America USA6153] gi|254742127|ref|ZP_05199814.1| chromosomal replication initiation protein [Bacillus anthracis str. Kruger B] gi|254755963|ref|ZP_05207995.1| chromosomal replication initiation protein [Bacillus anthracis str. Vollum] gi|254761357|ref|ZP_05213379.1| chromosomal replication initiation protein [Bacillus anthracis str. Australia 94] gi|300118809|ref|ZP_07056529.1| chromosomal replication initiation protein [Bacillus cereus SJ1] gi|38257418|sp|Q81W35|DNAA_BACAN RecName: Full=Chromosomal replication initiator protein DnaA gi|61212525|sp|Q63HG7|DNAA_BACCZ RecName: Full=Chromosomal replication initiator protein DnaA gi|61212595|sp|Q6HQ03|DNAA_BACHK RecName: Full=Chromosomal replication initiator protein DnaA gi|226735774|sp|B7JJB7|DNAA_BACC0 RecName: Full=Chromosomal replication initiator protein DnaA gi|254777883|sp|C3P8P5|DNAA_BACAA RecName: Full=Chromosomal replication initiator protein DnaA gi|254777884|sp|C3LIC2|DNAA_BACAC RecName: Full=Chromosomal replication initiator protein DnaA gi|30253517|gb|AAP24059.1| chromosomal replication initiator protein DnaA [Bacillus anthracis str. Ames] gi|47500403|gb|AAT29079.1| chromosomal replication initiator protein DnaA [Bacillus anthracis str. 'Ames Ancestor'] gi|49176967|gb|AAT52343.1| chromosomal replication initiator protein DnaA [Bacillus anthracis str. Sterne] gi|49330820|gb|AAT61466.1| chromosomal replication initiator protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51978677|gb|AAU20227.1| chromosomal replication initiator protein [Bacillus cereus E33L] gi|164711249|gb|EDR16805.1| chromosomal replication initiator protein DnaA [Bacillus anthracis str. A0488] gi|167510293|gb|EDR85696.1| chromosomal replication initiator protein DnaA [Bacillus anthracis str. A0193] gi|167529518|gb|EDR92268.1| chromosomal replication initiator protein DnaA [Bacillus anthracis str. A0442] gi|170127515|gb|EDS96389.1| chromosomal replication initiator protein DnaA [Bacillus anthracis str. A0389] gi|170666564|gb|EDT17337.1| chromosomal replication initiator protein DnaA [Bacillus anthracis str. A0465] gi|172080195|gb|EDT65287.1| chromosomal replication initiator protein DnaA [Bacillus anthracis str. A0174] gi|190559587|gb|EDV13578.1| chromosomal replication initiator protein DnaA [Bacillus anthracis Tsiankovskii-I] gi|195991262|gb|EDX55230.1| chromosomal replication initiator protein DnaA [Bacillus cereus W] gi|196023714|gb|EDX62390.1| chromosomal replication initiator protein DnaA [Bacillus cereus 03BB108] gi|196027221|gb|EDX65841.1| chromosomal replication initiator protein DnaA [Bacillus cereus NVH0597-99] gi|218539127|gb|ACK91525.1| chromosomal replication initiator protein DnaA [Bacillus cereus AH820] gi|227005950|gb|ACP15693.1| chromosomal replication initiator protein DnaA [Bacillus anthracis str. CDC 684] gi|228595786|gb|EEK53470.1| Chromosomal replication initiator protein dnaA [Bacillus cereus BGSC 6E1] gi|228658493|gb|EEL14159.1| Chromosomal replication initiator protein dnaA [Bacillus cereus 95/8201] gi|228688847|gb|EEL42678.1| Chromosomal replication initiator protein dnaA [Bacillus cereus Rock3-42] gi|228810494|gb|EEM56847.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228829214|gb|EEM74851.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228841581|gb|EEM86697.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229264977|gb|ACQ46614.1| chromosomal replication initiator protein DnaA [Bacillus anthracis str. A0248] gi|298723777|gb|EFI64499.1| chromosomal replication initiation protein [Bacillus cereus SJ1] Length = 446 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 87/233 (37%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86 + D ++ S A + P++ + + G G GK+ L + + Sbjct: 112 NPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIEH 171 Query: 87 KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 + ++ + I++ + +L++DI L + + FH Sbjct: 172 NPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFH 231 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H+ +++++ P L SR + + I+ PD + ++ K Sbjct: 232 TFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 291 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I ++ YI +++ ++ E + ++ + I LAAE LK+ Sbjct: 292 EGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINADLAAEALKD 344 >gi|119471658|ref|ZP_01614043.1| DNA replication initiator protein, transcriptional regulator of replication and other genes; binds DNA at DnaA boxes [Alteromonadales bacterium TW-7] gi|119445437|gb|EAW26724.1| DNA replication initiator protein, transcriptional regulator of replication and other genes; binds DNA at DnaA boxes [Alteromonadales bacterium TW-7] Length = 462 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 88/234 (37%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86 + D + + + A P V + G +G GK+ L + I ++ Sbjct: 128 KENYTFDSFVEGKSNQLAKAAATQVADNPGSAFNPVFIYGGTGLGKTHLLHAVGNGIMAN 187 Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128 K + ++ ++ + +E+ +D L +D + FH Sbjct: 188 KPDAKIVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALMIDDIQFFANKERSQEEFFH 247 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++ + + +++T+ +P L SR + I P+ + +++K Sbjct: 248 TFNALLEGNQQIILTSDRYPKEIEGVEDRLKSRFGWGLTIAIEPPELETRVAILMKKAQQ 307 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +I + ++A +I +++ ++ E ++++ A G I+ E L++ Sbjct: 308 SKINLPHEVAFFIAKKLRSNVRELEGALNRVIANANFTGRPISIDFVKEALRDL 361 >gi|145634169|ref|ZP_01789880.1| chromosomal replication initiation protein [Haemophilus influenzae PittAA] gi|148826359|ref|YP_001291112.1| chromosomal replication initiation protein [Haemophilus influenzae PittEE] gi|145268613|gb|EDK08606.1| chromosomal replication initiation protein [Haemophilus influenzae PittAA] gi|148716519|gb|ABQ98729.1| chromosomal replication initiation protein [Haemophilus influenzae PittEE] Length = 454 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 90/229 (39%), Gaps = 27/229 (11%) Query: 40 RDDLLVHSAIEQAVRL---IDSWPSWPS-RVVILVGPSGSGKSCLAN-----IWSDKSRS 90 D+ + + + A + + P PS L G +G GK+ L + I +DK + Sbjct: 125 FDNFVEGKSNQLARAVGQKLAQAPGEPSANPFFLYGGTGLGKTHLLHAIGNGILADKPNA 184 Query: 91 TRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINS 132 A + ++ + +L++DI + + FHI NS Sbjct: 185 RVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFFAEKEKTQEEFFHIFNS 244 Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 + + +++T+ +P L SR I PD + +++K + + Sbjct: 245 LFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNMN 304 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + +++A +I QR+ ++ E ++++ + +G I + LK+ Sbjct: 305 LPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353 >gi|148828164|ref|YP_001292917.1| chromosomal replication initiation protein [Haemophilus influenzae PittGG] gi|148719406|gb|ABR00534.1| chromosomal replication initiation protein [Haemophilus influenzae PittGG] Length = 454 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 90/229 (39%), Gaps = 27/229 (11%) Query: 40 RDDLLVHSAIEQAVRL---IDSWPSWPS-RVVILVGPSGSGKSCLAN-----IWSDKSRS 90 D+ + + + A + + P PS L G +G GK+ L + I +DK + Sbjct: 125 FDNFVEGKSNQLARAVGQKLAQAPGEPSANPFFLYGGTGLGKTHLLHAIGNGILADKPNA 184 Query: 91 TRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINS 132 A + ++ + +L++DI + + FHI NS Sbjct: 185 RVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFFAEKEKTQEEFFHIFNS 244 Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 + + +++T+ +P L SR I PD + +++K + + Sbjct: 245 LFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNMN 304 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + +++A +I QR+ ++ E ++++ + +G I + LK+ Sbjct: 305 LPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353 >gi|153002880|ref|YP_001377205.1| chromosomal replication initiator protein DnaA [Anaeromyxobacter sp. Fw109-5] gi|152026453|gb|ABS24221.1| chromosomal replication initiator protein DnaA [Anaeromyxobacter sp. Fw109-5] Length = 460 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 37/237 (15%), Positives = 84/237 (35%), Gaps = 25/237 (10%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD----- 86 + D +V + A + + P + L G SG GK+ L + + Sbjct: 127 NPRYTFDTFVVGESNRFAFAAAQAVAANPGHTWNPLFLHGDSGLGKTHLLHALAHAILDK 186 Query: 87 KSRSTRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDFND---TQLFHI 129 + + + + + K +L++D+ L D + FH Sbjct: 187 QGGRVAIVSSERYTNDFVAALSKGTMDDFRRKYRECTALLVDDVQFLAGKDKTAEEFFHT 246 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N +H + +++++ P LCSR + V++ P+ + ++ K Sbjct: 247 FNELHDHHVQIVLSSDRSPKELKGLDARLCSRFEWGMRVQVEAPEFETRAAILQKKAEVE 306 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 I + + + + ++ E + ++ A + IT +LA +VL + + Sbjct: 307 SIDLPGDVTQLLAAHIRSNVRELEGALMRLAAFASLKSEPITVALARDVLSDVIPPE 363 >gi|225850462|ref|YP_002730696.1| chromosomal replication initiator protein DnaA [Persephonella marina EX-H1] gi|225646033|gb|ACO04219.1| chromosomal replication initiator protein DnaA [Persephonella marina EX-H1] Length = 437 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 51/271 (18%), Positives = 102/271 (37%), Gaps = 31/271 (11%) Query: 2 NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRC-----LGISRDDLLVHSAIEQAVRLI 56 +L E+ FV + + D ++ Q S P + +V + + A Sbjct: 63 SLFGENLKIFVLSEDEEDIYIDEPVQKVESKPYRLTNLNPKFVFSNFIVGNCNKIAYSAC 122 Query: 57 DSWPSWPSRV---VILVGPSGSGKSCLANIWSD-----KSRSTRFSNIAKSLDSILI--- 105 S ++ + + G G GK+ L + + + A + S LI Sbjct: 123 MSVAENLGKIYNPLFIYGGIGLGKTHLLHATAHYVLSKNPDANIIYTTADTFMSELIYYM 182 Query: 106 ------------DTRKPVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVS 150 +L++D+ L+ + +L+HI N++H +++++ T P + Sbjct: 183 QNGSVLEFRRRYRDVDLLLIDDVQFLEGKERTQIELYHIFNALHLIGKQVILSSDTPPKN 242 Query: 151 WGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L SR + VV++ PD +I K D I + + I + + ++ Sbjct: 243 LKGLQERLKSRFVSGLVVEVKAPDLQTKISIINKKSRDMNIKLPNDVILLIAKTINTNIR 302 Query: 211 FAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 E + K+ + G +T +A EVLK+ Sbjct: 303 ELEGSLSKLKAYSEILGRPVTFDMAREVLKD 333 >gi|261879221|ref|ZP_06005648.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] gi|270334170|gb|EFA44956.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] Length = 469 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 34/262 (12%), Positives = 86/262 (32%), Gaps = 35/262 (13%) Query: 13 PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVI 68 P +P+ + QL ++ + + ++ + + + + + Sbjct: 116 PTVLDAAKPQQIDPQL------NPHLTFSNYIEGNSNMLPRSVGMSIAEHPNTMQFNPMF 169 Query: 69 LVGPSGSGKSCL---------------------ANIWSDKSRSTRFSNIAKSLDSILIDT 107 + GPSG GK+ L A ++ + + N T Sbjct: 170 IYGPSGCGKTHLVNAIGVKAKQLYPQKRVLYISARLFQVQYTNAVLQNKLNDFIG-FYQT 228 Query: 108 RKPVLLEDID---LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164 ++++DI FHI N + + +++ + P+ L +R Sbjct: 229 IDMLIVDDIQEWVSAVKTQETFFHIFNHLFRNGKRIILASDRPPIELKGMPDRLLTRFSC 288 Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 + ++ P++ ++ + I + +I Q S+ + +++ + ++ Sbjct: 289 GLIAELEKPNEQLCIDILESKIRRDGLNIPHDVVQFIAQTASGSVRDLQGVINSLMAYSI 348 Query: 225 SRGMGITRSLAAEVLKETQQCD 246 I LA V+K + D Sbjct: 349 VYNCDIDMRLAERVIKRAVKID 370 >gi|145630089|ref|ZP_01785871.1| chromosomal replication initiation protein [Haemophilus influenzae R3021] gi|144984370|gb|EDJ91793.1| chromosomal replication initiation protein [Haemophilus influenzae R3021] Length = 439 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 90/229 (39%), Gaps = 27/229 (11%) Query: 40 RDDLLVHSAIEQAVRL---IDSWPSWPS-RVVILVGPSGSGKSCLAN-----IWSDKSRS 90 D+ + + + A + + P PS L G +G GK+ L + I ++K + Sbjct: 125 FDNFVEGKSNQLARAVGQKLAQAPGEPSANPFFLYGGTGLGKTHLLHAIGNGILANKPNA 184 Query: 91 TRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINS 132 A + ++ + +L++DI + + FHI NS Sbjct: 185 RVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFFAEKEKTQEEFFHIFNS 244 Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 + + +++T+ +P L SR I PD + +++K + + Sbjct: 245 LFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNMN 304 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + +++A +I QR+ ++ E ++++ + +G I + LK+ Sbjct: 305 LPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353 >gi|309973507|gb|ADO96708.1| Chromosomal replication initiator protein [Haemophilus influenzae R2846] Length = 454 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 90/229 (39%), Gaps = 27/229 (11%) Query: 40 RDDLLVHSAIEQAVRL---IDSWPSWPS-RVVILVGPSGSGKSCLAN-----IWSDKSRS 90 D+ + + + A + + P PS L G +G GK+ L + I ++K + Sbjct: 125 FDNFVEGKSNQLARAVGQKLAQAPGEPSANPFFLYGGTGLGKTHLLHAIGNGILANKPNA 184 Query: 91 TRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINS 132 A + ++ + +L++DI + + FHI NS Sbjct: 185 RVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFFAEKEKTQEEFFHIFNS 244 Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 + + +++T+ +P L SR I PD + +++K + + Sbjct: 245 LFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNMN 304 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + +++A +I QR+ ++ E ++++ + +G I + LK+ Sbjct: 305 LPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353 >gi|300780158|ref|ZP_07090014.1| DNA-directed DNA replication initiator protein [Corynebacterium genitalium ATCC 33030] gi|300534268|gb|EFK55327.1| DNA-directed DNA replication initiator protein [Corynebacterium genitalium ATCC 33030] Length = 533 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 39/253 (15%), Positives = 99/253 (39%), Gaps = 32/253 (12%) Query: 16 QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE----QAVRLIDSWPSWPSRVVILVG 71 Q+ + + + + ++ ++ S+ AV + ++ P+ + + G Sbjct: 178 QREKPAHDPNRETSLN----PKYTFENFVIGSSNRFANGAAVAVAEN-PARAYNPLFIWG 232 Query: 72 PSGSGKSCLANIWSDKSRSTRFSN----------IAKSLDSILIDTRKP----------V 111 SG GK+ L + + SR + ++S+ D ++ + Sbjct: 233 GSGLGKTHLLHAAGNYSRVLQPDLRIKYVSSEEFTNDYINSVRDDRQESFKRRYRDLDIL 292 Query: 112 LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168 +++DI L+ + + FH N++HQ + +++++ P L +R + + Sbjct: 293 MVDDIQFLEGKEGTQEEFFHTFNALHQANKQIILSSDRPPKQLTTLEDRLRTRFEGGLIT 352 Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228 + PD + +++K A +D ++ I + E S+ E + ++ + Sbjct: 353 DVQPPDLETRIAILMKKAAADGTQVDDEVLELIASKFESSIRELEGALIRVSAYSSLIKE 412 Query: 229 GITRSLAAEVLKE 241 IT +A L++ Sbjct: 413 PITLDVAQIALRD 425 >gi|294496876|ref|YP_003560576.1| chromosomal replication initiator protein DnaA [Bacillus megaterium QM B1551] gi|294346813|gb|ADE67142.1| chromosomal replication initiator protein DnaA [Bacillus megaterium QM B1551] Length = 447 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 44/266 (16%), Positives = 98/266 (36%), Gaps = 30/266 (11%) Query: 2 NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPS 61 N +E++ P K+ N + Q + + D ++ S A + Sbjct: 83 NQAEEEFDIQTPKKKVNKDEGAEFPQSMLN----SKYTFDTFVIGSGNRFAHAASLAVAE 138 Query: 62 WPSRV---VILVGPSGSGKSCLANIW------SDKSRSTRFSNIAKSLDSILIDTR---- 108 P++ + + G G GK+ L + + + + + K + + R Sbjct: 139 APAKAYNPLFIYGGVGLGKTHLMHAIGHYVLDHNPAAKVVYLSSEKFTNEFINSIRDNKA 198 Query: 109 ----------KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 +L++DI L + + FH N++H+ +++++ P Sbjct: 199 VEFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLE 258 Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215 L SR + + I+ PD + ++ K + I ++ YI +++ ++ E Sbjct: 259 DRLRSRFEWGLITDITPPDLETRIAILRKKAKADGLVIPNEVMLYIANQIDSNIRELEGA 318 Query: 216 VDKMDNLALSRGMGITRSLAAEVLKE 241 + ++ + I LAAE LK+ Sbjct: 319 LIRVVAYSSLINKDINADLAAEALKD 344 >gi|228471635|ref|ZP_04056409.1| chromosomal replication initiator protein DnaA [Capnocytophaga gingivalis ATCC 33624] gi|228277054|gb|EEK15740.1| chromosomal replication initiator protein DnaA [Capnocytophaga gingivalis ATCC 33624] Length = 478 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 38/239 (15%), Positives = 81/239 (33%), Gaps = 37/239 (15%) Query: 35 CLGISRDDLLVHSAIEQAV----RLIDSWPSWPSRVVILVGPSGSGKSCLAN-------- 82 + D + + A + + + + G G GK+ LA+ Sbjct: 142 NPNKNFDTFIEGESNRLARSAGKAITERPGGTSFNPLFIFGGVGLGKTHLAHAIGNEIQE 201 Query: 83 --------------------IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 + + + T F + + +D ++ID + Sbjct: 202 KHPKKRILYIEAEDFTKQYSVAAKNNNRTDFIHFYQQIDVLIIDNVQFFA-----SKPGT 256 Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 F I N +HQ L++T+ PV L SR K ++ PD ++++ Sbjct: 257 QDVFFQIFNHLHQNGKQLILTSDKAPVDIQDVEQRLLSRFKWGLSAELQAPDYQMRKRIL 316 Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + + + +++ YI Q ++ ++ E + + AL IT LA + + + Sbjct: 317 QAILYRDGVEMSEEIVDYIAQNVKTNIRELEGVNTSLMAEALFNKKEITLDLAKKAVDK 375 >gi|331007619|ref|ZP_08330761.1| Chromosomal replication initiator protein DnaA [gamma proteobacterium IMCC1989] gi|330418559|gb|EGG93083.1| Chromosomal replication initiator protein DnaA [gamma proteobacterium IMCC1989] Length = 584 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 37/235 (15%), Positives = 87/235 (37%), Gaps = 32/235 (13%) Query: 37 GISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW-------- 84 + D + + A +++++ P + + G G GK+ L + Sbjct: 252 SFTFDSFVEGKSNQMGLAAAQQVVEN-PGGSYNPLFIYGGVGLGKTHLMHAVGNEMARRN 310 Query: 85 --------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDTQLF 127 +D ++ + + I + +L++DI + + F Sbjct: 311 PNAKIVYLHSERFVADMVKALQLNAINDFKR--YYRSVDALLIDDIQFFAGKDRSQEEFF 368 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + +++T +P L SR +++ P+ + +++K A Sbjct: 369 HTFNALLEGNQQIILTCDRYPKVINNLEERLKSRFGWGLTIEVEPPELETRAAILLKRAA 428 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + +I + A +I QR+ ++ E + ++ A IT L E LK+ Sbjct: 429 EIKIDLSYDAAFFIAQRVRSNVRELEGALKRVIANATFTQRPITVDLVKEALKDL 483 >gi|281423570|ref|ZP_06254483.1| bacterial DnaA protein helix-turn-helix protein [Prevotella oris F0302] gi|281402390|gb|EFB33221.1| bacterial DnaA protein helix-turn-helix protein [Prevotella oris F0302] Length = 468 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 43/263 (16%), Positives = 92/263 (34%), Gaps = 37/263 (14%) Query: 13 PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPS-RVVI 68 P D+ + + QL ++ + + ++ + A L I PS P + Sbjct: 115 PSPMDVDKAADIDTQL------DPHLNFKNYVEGTSNKLARSLGLSIAEHPSQPQFNPMF 168 Query: 69 LVGPSGSGKSCL---------------------ANIWSDK-SRSTRFSNIAKSLDSILID 106 + GPSG GK+ L A ++ + + S+I + Sbjct: 169 IYGPSGCGKTHLINAIGLRCKQLYPEKRVLYISARLFQSQFVDANLHSSINDFIR--FYQ 226 Query: 107 TRKPVLLEDIDL---LDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 T ++++DI FHI N + + +L+ + PV L +R Sbjct: 227 TIDMLIVDDIQEWVNATKTQDTFFHIFNHLFRNGKRILLVSDRPPVDLKGMNERLLTRFS 286 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + ++ P+ + ++ + I ++ +I S+ E +V+ + + Sbjct: 287 CGLIAELEKPNVELCTDILKAKIRRDGLHIPDEVIRFIASTANGSVRDLEGVVNSLLAYS 346 Query: 224 LSRGMGITRSLAAEVLKETQQCD 246 + + LA V+K + D Sbjct: 347 VVYNSNVDMRLAERVIKRAVKVD 369 >gi|160889316|ref|ZP_02070319.1| hypothetical protein BACUNI_01739 [Bacteroides uniformis ATCC 8492] gi|270295909|ref|ZP_06202109.1| chromosomal replication initiator protein DnaA [Bacteroides sp. D20] gi|317479651|ref|ZP_07938776.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 4_1_36] gi|156861323|gb|EDO54754.1| hypothetical protein BACUNI_01739 [Bacteroides uniformis ATCC 8492] gi|270273313|gb|EFA19175.1| chromosomal replication initiator protein DnaA [Bacteroides sp. D20] gi|316904216|gb|EFV26045.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 4_1_36] Length = 461 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 44/266 (16%), Positives = 95/266 (35%), Gaps = 33/266 (12%) Query: 11 FVPDKQKNDQPKNKEEQLFFSF--PR-CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV- 66 +P KQ D+ + Q+ P + + + + + + + ++ P++ Sbjct: 101 IIPQKQVMDK---RIPQIPVPELDPHLNPEYNFETFIEGYSNKLSRSVAEAVALNPAKTI 157 Query: 67 ---VILVGPSGSGKSCLANIWSDK-------SRSTRFSNIA---KSLDSILIDTRKPVL- 112 + L G SG GK+ LAN K R S + DS+ +T + Sbjct: 158 FNPLFLYGASGVGKTHLANAIGTKIKELYPEKRVLYVSAHLFQVQYTDSVRNNTTNDFIN 217 Query: 113 ------------LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 +++ + FHI N +HQ L++T+ PV L + Sbjct: 218 FYQTIDILIIDDIQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVLLQGMEERLIT 277 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 R K V ++ P + + ++ + +++ YI + + S+ E +V + Sbjct: 278 RFKWGMVAELEKPTVELRKNILRNKIHRDGLQFPQEVIDYIAENVGDSVRDLEGIVISIM 337 Query: 221 NLALSRGMGITRSLAAEVLKETQQCD 246 + I L ++++ + Sbjct: 338 AHSTIYNKEIDLELTQRIVRKVVNSE 363 >gi|315606265|ref|ZP_07881281.1| DNA-directed DNA replication initiator protein [Prevotella buccae ATCC 33574] gi|315251956|gb|EFU31929.1| DNA-directed DNA replication initiator protein [Prevotella buccae ATCC 33574] Length = 469 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 36/262 (13%), Positives = 84/262 (32%), Gaps = 35/262 (13%) Query: 13 PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVI 68 P QP+ + QL ++ ++ + + + + + + + Sbjct: 116 PTALDAAQPQALDPQL------NPHLTFNNYIEGDSNKLPRSIGLSIAEHPNTTQFNPMF 169 Query: 69 LVGPSGSGKSCL---------------------ANIWSDKSRSTRFSNIAKSLDSILIDT 107 + GPSG GK+ L A ++ + S N T Sbjct: 170 IYGPSGCGKTHLVNAIGLHAKQLYPQKRVLYVSARLFQVQYTSAVLQNTLNDF-IKFYQT 228 Query: 108 RKPVLLEDID---LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164 ++++DI FHI N + + +++ + PV L +R Sbjct: 229 IDLLIVDDIQEWMTATKTQETFFHIFNHLFKNGKRIILASDRPPVDLKGMPDRLLTRFSC 288 Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 + ++ P+ ++ + I + YI + S+ E +++ + ++ Sbjct: 289 GLIAELEKPNVQLCIDILQSKIRRDGLKIPDNVVQYIAENASGSVRGLEGVINGLLAYSI 348 Query: 225 SRGMGITRSLAAEVLKETQQCD 246 + I LA +K + Sbjct: 349 TYNCDINLKLAERCIKRAVNIE 370 >gi|307243408|ref|ZP_07525565.1| chromosomal replication initiator protein DnaA [Peptostreptococcus stomatis DSM 17678] gi|306493218|gb|EFM65214.1| chromosomal replication initiator protein DnaA [Peptostreptococcus stomatis DSM 17678] Length = 454 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 40/261 (15%), Positives = 89/261 (34%), Gaps = 35/261 (13%) Query: 16 QKNDQPKNKEEQLFFSFPR-------CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---- 64 +KN PK E++ + + +V S+ AV + Sbjct: 93 EKNSNPKENSEKI-MDLATSIANSNLNPKYTFNTFVVGSSNAMAVAACQRVAEYDETAND 151 Query: 65 RVVILVGPSGSGKSCLANIWSDK------SRSTRFSNIAKSLDSILIDTRK--------- 109 + L G G GK+ L + + S+ + + + ++ R+ Sbjct: 152 NPLFLYGGVGLGKTHLMHAIGHRVLERDPSKKILYVSSETFTNEMVTAIREKKNSEFREK 211 Query: 110 -----PVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161 +++D+ + +LFH N +H +++++ P L SR Sbjct: 212 YRNVDIFMIDDVQFVAGKNSVQEELFHTFNDVHGAGKKIILSSDKPPKDIPELEERLRSR 271 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 + I PD ++ + ++ ID + YI ++ ++ E ++K+ Sbjct: 272 FVWGLITDIQAPDYGTRMAILQNKAENDKLDIDSDVFEYIADNVKSNIRELEGALNKVIL 331 Query: 222 LALSRGMGITRSLAAEVLKET 242 + + + A E LK+ Sbjct: 332 YSNLSAKPMNLATAKEALKDV 352 >gi|229176165|ref|ZP_04303657.1| Chromosomal replication initiator protein dnaA [Bacillus cereus MM3] gi|228607324|gb|EEK64654.1| Chromosomal replication initiator protein dnaA [Bacillus cereus MM3] Length = 446 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 86/233 (36%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86 + D ++ S A + P++ + + G G GK+ L + + Sbjct: 112 NPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIEH 171 Query: 87 KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 + ++ + I++ + +L++DI L + + FH Sbjct: 172 NPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFH 231 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H+ +++++ P L SR + + I+ PD + ++ K Sbjct: 232 TFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 291 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I ++ YI +++ ++ E + ++ + I LAAE LK Sbjct: 292 EGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINADLAAEALKN 344 >gi|295406865|ref|ZP_06816669.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A8819] gi|294968330|gb|EFG44355.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A8819] Length = 453 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 87/233 (37%), Gaps = 28/233 (12%) Query: 40 RDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS-----RST 91 D ++ A + P+ + + G G GK+ L + + Sbjct: 122 FDTFVIGPGNRFPHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHHVLDNNPDAK 181 Query: 92 RFSNIAKSLDSILIDTRK---------------PVLLEDIDLLD---FNDTQLFHIINSI 133 ++ + I + + +L++DI + + F+ N + Sbjct: 182 VIYTSSEKFTNEFIKSIRDNEGEAFRERYRNIDVLLIDDIQFIQNKVQTQEEFFYTFNEL 241 Query: 134 HQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 HQ + +++++ P L D L SR + +V I+ PD + ++ K + ++ Sbjct: 242 HQNNKQIVISSDRPPKEIA-QLEDRLRSRFEWGLIVDITPPDYETRMAILQKKIEEEKLD 300 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 I + YI +++ ++ E + ++ + G IT L AE LK+ Q Sbjct: 301 IPPEALNYIANQIQSNIRELEGALTRLLAYSQLLGKPITTELTAEALKDIIQA 353 >gi|283469230|emb|CAQ48441.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus ST398] Length = 453 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 87/233 (37%), Gaps = 28/233 (12%) Query: 40 RDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS-----RST 91 D ++ A + P+ + + G G GK+ L + + Sbjct: 122 FDTFVIGPGNRFPHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHHVLDNNPDAK 181 Query: 92 RFSNIAKSLDSILIDTRK---------------PVLLEDIDLLD---FNDTQLFHIINSI 133 ++ + I + + +L++DI + + F+ N + Sbjct: 182 VIYTSSEKFTNEFIKSIRDNEGEAFRERYRNIDVLLIDDIQFIQNKVQTQEEFFYTFNEL 241 Query: 134 HQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 HQ + +++++ P L D L SR + +V I+ PD + ++ K + ++ Sbjct: 242 HQNNKQIVISSDRPPKEIA-QLEDRLRSRFEWGLIVDITPPDYETRMAILQKKIEEEKLD 300 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 I + YI +++ ++ E + ++ + G IT L AE LK+ Q Sbjct: 301 IPPEALNYIANQIQSNIRELEGALTRLLAYSQLLGKPITTELTAEALKDIIQA 353 >gi|82749778|ref|YP_415519.1| chromosomal replication initiation protein [Staphylococcus aureus RF122] gi|123727433|sp|Q2YUP1|DNAA_STAAB RecName: Full=Chromosomal replication initiator protein DnaA gi|82655309|emb|CAI79689.1| chromosomal replicator initiator protein [Staphylococcus aureus RF122] Length = 453 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 87/233 (37%), Gaps = 28/233 (12%) Query: 40 RDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS-----RST 91 D ++ A + P+ + + G G GK+ L + + Sbjct: 122 FDTFVIGPGNRFPHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHHVLDNNPDAK 181 Query: 92 RFSNIAKSLDSILIDTRK---------------PVLLEDIDLLD---FNDTQLFHIINSI 133 ++ + I + + +L++DI + + F+ N + Sbjct: 182 VIYTSSEKFTNEFIKSIRDNEGEAFRERYRNIDVLLIDDIQFIQNKVQTQEEFFYTFNEL 241 Query: 134 HQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 HQ + +++++ P L D L SR + +V I+ PD + ++ K + ++ Sbjct: 242 HQNNKQIVISSDRPPKEIA-QLEDRLRSRFEWGLIVDITPPDYETRMAILQKKIEEEKLD 300 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 I + YI +++ ++ E + ++ + G IT L AE LK+ Q Sbjct: 301 IPPEALNYIANQIQSNIRELEGALTRLLAYSQLLGKPITTELTAEALKDIIQA 353 >gi|49482254|ref|YP_039478.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus MRSA252] gi|221141516|ref|ZP_03566009.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus str. JKD6009] gi|257424197|ref|ZP_05600626.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus subsp. aureus 55/2053] gi|257426874|ref|ZP_05603276.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus subsp. aureus 65-1322] gi|257429510|ref|ZP_05605897.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus subsp. aureus 68-397] gi|257432157|ref|ZP_05608520.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus subsp. aureus E1410] gi|257435118|ref|ZP_05611169.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus M876] gi|258423237|ref|ZP_05686129.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A9635] gi|282907048|ref|ZP_06314896.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus subsp. aureus Btn1260] gi|282910027|ref|ZP_06317835.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus WW2703/97] gi|282912275|ref|ZP_06320071.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus WBG10049] gi|282912915|ref|ZP_06320707.1| DNA replication initiator protein, ATPase [Staphylococcus aureus subsp. aureus M899] gi|282922543|ref|ZP_06330233.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus C101] gi|283959485|ref|ZP_06376926.1| DNA replication initiator protein, ATPase [Staphylococcus aureus subsp. aureus A017934/97] gi|293497968|ref|ZP_06665822.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus 58-424] gi|293511558|ref|ZP_06670252.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus M809] gi|293550167|ref|ZP_06672839.1| DNA replication initiator protein, ATPase [Staphylococcus aureus subsp. aureus M1015] gi|295429298|ref|ZP_06821920.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus EMRSA16] gi|297589200|ref|ZP_06947841.1| DNA-directed DNA replication initiator protein [Staphylococcus aureus subsp. aureus MN8] gi|304379949|ref|ZP_07362678.1| DNA-directed DNA replication initiator protein [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|56748687|sp|Q6GKU4|DNAA_STAAR RecName: Full=Chromosomal replication initiator protein DnaA gi|49240383|emb|CAG39029.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus MRSA252] gi|257273215|gb|EEV05317.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus subsp. aureus 55/2053] gi|257276505|gb|EEV07956.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus subsp. aureus 65-1322] gi|257279991|gb|EEV10578.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus subsp. aureus 68-397] gi|257283036|gb|EEV13168.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus subsp. aureus E1410] gi|257285714|gb|EEV15830.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus M876] gi|257846566|gb|EEV70588.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A9635] gi|269939527|emb|CBA12169.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus TW20] gi|282314764|gb|EFB45150.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus C101] gi|282323015|gb|EFB53334.1| DNA replication initiator protein, ATPase [Staphylococcus aureus subsp. aureus M899] gi|282323971|gb|EFB54287.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus WBG10049] gi|282326093|gb|EFB56398.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus WW2703/97] gi|282329947|gb|EFB59468.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus subsp. aureus Btn1260] gi|283789077|gb|EFC27904.1| DNA replication initiator protein, ATPase [Staphylococcus aureus subsp. aureus A017934/97] gi|290919214|gb|EFD96290.1| DNA replication initiator protein, ATPase [Staphylococcus aureus subsp. aureus M1015] gi|291096899|gb|EFE27157.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus 58-424] gi|291465516|gb|EFF08048.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus M809] gi|295127057|gb|EFG56701.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus EMRSA16] gi|297577711|gb|EFH96424.1| DNA-directed DNA replication initiator protein [Staphylococcus aureus subsp. aureus MN8] gi|302749912|gb|ADL64089.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304341529|gb|EFM07439.1| DNA-directed DNA replication initiator protein [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312436858|gb|ADQ75929.1| DNA-directed DNA replication initiator protein [Staphylococcus aureus subsp. aureus TCH60] gi|315195227|gb|EFU25615.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus CGS00] gi|329312724|gb|AEB87137.1| Chromosomal replication initiator protein dnaA [Staphylococcus aureus subsp. aureus T0131] Length = 453 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 87/233 (37%), Gaps = 28/233 (12%) Query: 40 RDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS-----RST 91 D ++ A + P+ + + G G GK+ L + + Sbjct: 122 FDTFVIGPGNRFPHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHHVLDNNPDAK 181 Query: 92 RFSNIAKSLDSILIDTRK---------------PVLLEDIDLLD---FNDTQLFHIINSI 133 ++ + I + + +L++DI + + F+ N + Sbjct: 182 VIYTSSEKFTNEFIKSIRDNEGEAFRERYRNIDVLLIDDIQFIQNKVQTQEEFFYTFNEL 241 Query: 134 HQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 HQ + +++++ P L D L SR + +V I+ PD + ++ K + ++ Sbjct: 242 HQNNKQIVISSDRPPKEIA-QLEDRLRSRFEWGLIVDITPPDYETRMAILQKKIEEEKLD 300 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 I + YI +++ ++ E + ++ + G IT L AE LK+ Q Sbjct: 301 IPPEALNYIANQIQSNIRELEGALTRLLAYSQLLGKPITTELTAEALKDIIQA 353 >gi|15922991|ref|NP_370525.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus Mu50] gi|15925706|ref|NP_373239.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus N315] gi|21281730|ref|NP_644816.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus MW2] gi|49484913|ref|YP_042134.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57651109|ref|YP_184912.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus COL] gi|87161673|ref|YP_492723.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88193824|ref|YP_498609.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148266448|ref|YP_001245391.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus JH9] gi|150392481|ref|YP_001315156.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus JH1] gi|151220213|ref|YP_001331036.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156978332|ref|YP_001440591.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus Mu3] gi|161508267|ref|YP_001573926.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253730400|ref|ZP_04864565.1| replication initiation protein DnaA [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733838|ref|ZP_04868003.1| replication initiation protein DnaA [Staphylococcus aureus subsp. aureus TCH130] gi|254663935|ref|ZP_05143407.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257793539|ref|ZP_05642518.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A9781] gi|258411155|ref|ZP_05681434.1| replication initiation protein DnaA [Staphylococcus aureus A9763] gi|258420941|ref|ZP_05683875.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A9719] gi|258438580|ref|ZP_05689803.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus A9299] gi|258443964|ref|ZP_05692302.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus A8115] gi|258446220|ref|ZP_05694380.1| replication initiation protein dnaA [Staphylococcus aureus A6300] gi|258449121|ref|ZP_05697227.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus A6224] gi|258451366|ref|ZP_05699397.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus A5948] gi|258454401|ref|ZP_05702369.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus A5937] gi|262049433|ref|ZP_06022305.1| chromosomal replicator initiator protein [Staphylococcus aureus D30] gi|262051894|ref|ZP_06024109.1| chromosomal replicator initiator protein [Staphylococcus aureus 930918-3] gi|269201691|ref|YP_003280960.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus ED98] gi|282894280|ref|ZP_06302510.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A8117] gi|282902632|ref|ZP_06310525.1| DNA replication initiator protein, ATPase [Staphylococcus aureus subsp. aureus C160] gi|282918069|ref|ZP_06325819.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus D139] gi|282920720|ref|ZP_06328439.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A9765] gi|282921291|ref|ZP_06329009.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus C427] gi|282927751|ref|ZP_06335365.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A10102] gi|283767791|ref|ZP_06340706.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus subsp. aureus H19] gi|284023038|ref|ZP_06377436.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus 132] gi|294849829|ref|ZP_06790569.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A9754] gi|296275686|ref|ZP_06858193.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus MR1] gi|297209451|ref|ZP_06925849.1| DNA-directed DNA replication initiator protein [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245900|ref|ZP_06929762.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A8796] gi|300911475|ref|ZP_07128924.1| DNA-directed DNA replication initiator protein [Staphylococcus aureus subsp. aureus TCH70] gi|56748673|sp|Q6GD89|DNAA_STAAS RecName: Full=Chromosomal replication initiator protein DnaA gi|56749818|sp|P68865|DNAA_STAAM RecName: Full=Chromosomal replication initiator protein DnaA gi|56749819|sp|P68866|DNAA_STAAN RecName: Full=Chromosomal replication initiator protein DnaA gi|56749820|sp|P68867|DNAA_STAAU RecName: Full=Chromosomal replication initiator protein DnaA gi|56749821|sp|P68868|DNAA_STAAW RecName: Full=Chromosomal replication initiator protein DnaA gi|71151805|sp|Q5HJZ5|DNAA_STAAC RecName: Full=Chromosomal replication initiator protein DnaA gi|123291872|sp|Q2G2H5|DNAA_STAA8 RecName: Full=Chromosomal replication initiator protein DnaA gi|123736033|sp|Q2FKQ5|DNAA_STAA3 RecName: Full=Chromosomal replication initiator protein DnaA gi|166215334|sp|A7WWM4|DNAA_STAA1 RecName: Full=Chromosomal replication initiator protein DnaA gi|172048750|sp|A6QD41|DNAA_STAAE RecName: Full=Chromosomal replication initiator protein DnaA gi|189083281|sp|A6TXF1|DNAA_STAA2 RecName: Full=Chromosomal replication initiator protein DnaA gi|189083282|sp|A5INP2|DNAA_STAA9 RecName: Full=Chromosomal replication initiator protein DnaA gi|189083283|sp|A8YYS4|DNAA_STAAT RecName: Full=Chromosomal replication initiator protein DnaA gi|1694677|dbj|BAA13755.1| DnaA [Staphylococcus aureus] gi|13699918|dbj|BAB41217.1| chromosomal replication initiator protein [Staphylococcus aureus subsp. aureus N315] gi|14245768|dbj|BAB56163.1| chromosomal replication initiator protein [Staphylococcus aureus subsp. aureus Mu50] gi|21203165|dbj|BAB93866.1| chromosomal replication initiator protein [Staphylococcus aureus subsp. aureus MW2] gi|49243356|emb|CAG41773.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus MSSA476] gi|57285295|gb|AAW37389.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus COL] gi|58578564|dbj|BAD89355.1| DnaA [Staphylococcus aureus] gi|87127647|gb|ABD22161.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87201382|gb|ABD29192.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147739517|gb|ABQ47815.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus JH9] gi|149944933|gb|ABR50869.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus JH1] gi|150373013|dbj|BAF66273.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus str. Newman] gi|156720467|dbj|BAF76884.1| chromosomal replication initiator protein [Staphylococcus aureus subsp. aureus Mu3] gi|160367076|gb|ABX28047.1| replication initiation protein DnaA [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253725880|gb|EES94609.1| replication initiation protein DnaA [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728141|gb|EES96870.1| replication initiation protein DnaA [Staphylococcus aureus subsp. aureus TCH130] gi|257787511|gb|EEV25851.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A9781] gi|257840040|gb|EEV64505.1| replication initiation protein DnaA [Staphylococcus aureus A9763] gi|257843131|gb|EEV67546.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A9719] gi|257848139|gb|EEV72131.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus A9299] gi|257850848|gb|EEV74792.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus A8115] gi|257855046|gb|EEV77989.1| replication initiation protein dnaA [Staphylococcus aureus A6300] gi|257857554|gb|EEV80449.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus A6224] gi|257860896|gb|EEV83713.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus A5948] gi|257863495|gb|EEV86255.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus A5937] gi|259160221|gb|EEW45250.1| chromosomal replicator initiator protein [Staphylococcus aureus 930918-3] gi|259162430|gb|EEW47000.1| chromosomal replicator initiator protein [Staphylococcus aureus D30] gi|262073981|gb|ACY09954.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus ED98] gi|282315706|gb|EFB46090.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus C427] gi|282318354|gb|EFB48714.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus D139] gi|282590511|gb|EFB95589.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A10102] gi|282594128|gb|EFB99116.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A9765] gi|282597091|gb|EFC02050.1| DNA replication initiator protein, ATPase [Staphylococcus aureus subsp. aureus C160] gi|282763325|gb|EFC03455.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A8117] gi|283461670|gb|EFC08754.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus subsp. aureus H19] gi|285815728|gb|ADC36215.1| Chromosomal replication initiator protein DnaA [Staphylococcus aureus 04-02981] gi|294823377|gb|EFG39806.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A9754] gi|296885912|gb|EFH24847.1| DNA-directed DNA replication initiator protein [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297177265|gb|EFH36518.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A8796] gi|298693323|gb|ADI96545.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus ED133] gi|300887654|gb|EFK82850.1| DNA-directed DNA replication initiator protein [Staphylococcus aureus subsp. aureus TCH70] gi|302331773|gb|ADL21966.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus JKD6159] gi|312828564|emb|CBX33406.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129544|gb|EFT85536.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus CGS03] gi|315197919|gb|EFU28252.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus CGS01] gi|320141418|gb|EFW33261.1| replication initiator protein DnaA [Staphylococcus aureus subsp. aureus MRSA131] gi|320144401|gb|EFW36166.1| replication initiator protein DnaA [Staphylococcus aureus subsp. aureus MRSA177] gi|323439698|gb|EGA97416.1| chromosomal replication initiation protein [Staphylococcus aureus O11] gi|323443271|gb|EGB00888.1| chromosomal replication initiation protein [Staphylococcus aureus O46] gi|329725589|gb|EGG62068.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus 21172] gi|329731888|gb|EGG68248.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus 21189] gi|329732572|gb|EGG68922.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus 21193] Length = 453 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 87/233 (37%), Gaps = 28/233 (12%) Query: 40 RDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS-----RST 91 D ++ A + P+ + + G G GK+ L + + Sbjct: 122 FDTFVIGPGNRFPHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHHVLDNNPDAK 181 Query: 92 RFSNIAKSLDSILIDTRK---------------PVLLEDIDLLD---FNDTQLFHIINSI 133 ++ + I + + +L++DI + + F+ N + Sbjct: 182 VIYTSSEKFTNEFIKSIRDNEGEAFRERYRNIDVLLIDDIQFIQNKVQTQEEFFYTFNEL 241 Query: 134 HQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 HQ + +++++ P L D L SR + +V I+ PD + ++ K + ++ Sbjct: 242 HQNNKQIVISSDRPPKEIA-QLEDRLRSRFEWGLIVDITPPDYETRMAILQKKIEEEKLD 300 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 I + YI +++ ++ E + ++ + G IT L AE LK+ Q Sbjct: 301 IPPEALNYIANQIQSNIRELEGALTRLLAYSQLLGKPITTELTAEALKDIIQA 353 >gi|254876148|ref|ZP_05248858.1| chromosomal replication initiator protein dnaA [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842169|gb|EET20583.1| chromosomal replication initiator protein dnaA [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 497 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 38/243 (15%), Positives = 89/243 (36%), Gaps = 26/243 (10%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN 82 ++ F P D +V A + A P ++ + + G SG GK+ L Sbjct: 154 QEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLHNPLFIYGGSGLGKTHLMQ 213 Query: 83 IWSDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFN 122 + +R + +S + + +L++DI + Sbjct: 214 AIGNHAREVNPNARIIYTNSEQFIKDYVNSIRLQDQDEFQRVYRSADILLIDDIQFIAGK 273 Query: 123 D---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179 + + FH N++++ +++T+ +P L SR V + +PD + Sbjct: 274 EGTAQEFFHTFNALYENGKQIILTSDKYPNEIEGLEERLVSRFGYGLTVSVDMPDLETRI 333 Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 +++K D + + AA+I + + ++ E ++++ + T +A L Sbjct: 334 AILLKKAHDLGQKLPNETAAFIAENVRTNVRELEGALNRVLTTSKFNHKDPTIEVAQACL 393 Query: 240 KET 242 ++ Sbjct: 394 RDV 396 >gi|195973842|gb|ACG63486.1| chromosomal replication initiator protein DnaA [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|195973844|gb|ACG63487.1| chromosomal replication initiator protein DnaA [Francisella philomiragia] gi|195973846|gb|ACG63488.1| chromosomal replication initiator protein DnaA [Francisella philomiragia] gi|195973848|gb|ACG63489.1| chromosomal replication initiator protein DnaA [Francisella philomiragia] gi|195973850|gb|ACG63490.1| chromosomal replication initiator protein DnaA [Francisella philomiragia] Length = 434 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 38/243 (15%), Positives = 89/243 (36%), Gaps = 26/243 (10%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN 82 ++ F P D +V A + A P ++ + + G SG GK+ L Sbjct: 116 QEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLHNPLFIYGGSGLGKTHLMQ 175 Query: 83 IWSDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFN 122 + +R + +S + + +L++DI + Sbjct: 176 AIGNHAREVNPNARIIYTNSEQFIKDYVNSIRLQDQDEFQRVYRSADILLIDDIQFIAGK 235 Query: 123 D---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179 + + FH N++++ +++T+ +P L SR V + +PD + Sbjct: 236 EGTAQEFFHTFNALYENGKQIILTSDKYPNEIEGLEERLVSRFGYGLTVSVDMPDLETRI 295 Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 +++K D + + AA+I + + ++ E ++++ + T +A L Sbjct: 296 AILLKKAHDLGQKLPNETAAFIAENVRTNVRELEGALNRVLTTSKFNHKDPTIEVAQACL 355 Query: 240 KET 242 ++ Sbjct: 356 RDV 358 >gi|167627066|ref|YP_001677566.1| chromosomal replication initiation protein [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|241667603|ref|ZP_04755181.1| chromosomal replication initiation protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|189044639|sp|B0TWF7|DNAA_FRAP2 RecName: Full=Chromosomal replication initiator protein DnaA gi|167597067|gb|ABZ87065.1| chromosomal replication initiator protein DnaA [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 491 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 38/243 (15%), Positives = 89/243 (36%), Gaps = 26/243 (10%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN 82 ++ F P D +V A + A P ++ + + G SG GK+ L Sbjct: 148 QEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLHNPLFIYGGSGLGKTHLMQ 207 Query: 83 IWSDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFN 122 + +R + +S + + +L++DI + Sbjct: 208 AIGNHAREVNPNARIIYTNSEQFIKDYVNSIRLQDQDEFQRVYRSADILLIDDIQFIAGK 267 Query: 123 D---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179 + + FH N++++ +++T+ +P L SR V + +PD + Sbjct: 268 EGTAQEFFHTFNALYENGKQIILTSDKYPNEIEGLEERLVSRFGYGLTVSVDMPDLETRI 327 Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 +++K D + + AA+I + + ++ E ++++ + T +A L Sbjct: 328 AILLKKAHDLGQKLPNETAAFIAENVRTNVRELEGALNRVLTTSKFNHKDPTIEVAQACL 387 Query: 240 KET 242 ++ Sbjct: 388 RDV 390 >gi|118474813|ref|YP_891211.1| chromosomal replication initiation protein [Campylobacter fetus subsp. fetus 82-40] gi|166201872|sp|A0RLX8|DNAA_CAMFF RecName: Full=Chromosomal replication initiator protein DnaA gi|118414039|gb|ABK82459.1| chromosomal replication initiator protein DnaA [Campylobacter fetus subsp. fetus 82-40] Length = 436 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 80/232 (34%), Gaps = 24/232 (10%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN---IWSDKS 88 + + +V + + A P +V + + G +G GK+ L + + Sbjct: 102 NPSYTFESFVVGDSNQFAYISSQQAAQNPGKVYNPLFIYGSTGLGKTHLLQSIGNYCLEH 161 Query: 89 RSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHII 130 T ++ S I + +L++DI ++ + FH Sbjct: 162 GKTVICVTSEQFMSDFIRNVENRTMNKFKEKYRNCDILLIDDIQFFHKSEKTQEEFFHTF 221 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N IH ++MT+ P L SR + + I+ P+ D ++I Sbjct: 222 NEIHAKKGQIVMTSDKPPKMLKGFEERLKSRFEWGLMADITPPELDTKIRIIKAKCEFDG 281 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 I + + YI M ++ E + ++ A IT A V+K+ Sbjct: 282 INLSSDIIEYIATNMGDNIREIESAIININAFANIMRQEITLEFAKNVIKDQ 333 >gi|221633151|ref|YP_002522376.1| chromosomal replication initiator protein DnaA [Thermomicrobium roseum DSM 5159] gi|254777921|sp|B9L0U6|DNAA_THERP RecName: Full=Chromosomal replication initiator protein DnaA gi|221156567|gb|ACM05694.1| chromosomal replication initiator protein DnaA [Thermomicrobium roseum DSM 5159] Length = 465 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 37/249 (14%), Positives = 94/249 (37%), Gaps = 30/249 (12%) Query: 23 NKEEQLFF----SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGS 75 + +QL + + +V A + P + + G G Sbjct: 104 SASKQLSLTPSPEHGLNPRYTFEKFVVGPNNRLAHAAALAVADRPGEKFNPLFIYGGVGL 163 Query: 76 GKSCLANIWSDKSRSTR------FSNIAKSLDSILID--------------TRKPVLLED 115 GK+ L + ++ + R + + + ++ T ++++D Sbjct: 164 GKTHLLHAIGHRALANRPTLKVCYVSSEVFTNELINAIRHQRTDDFRNRYRTIDILMIDD 223 Query: 116 IDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 I + + + FH N+++Q +++++ P L SR + + I Sbjct: 224 IQFIAGKESTQEEFFHTFNALYQSGKQIVISSDRPPRLIPDLADRLRSRFEGGLLADIQP 283 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232 PD + + ++++ + + + + ++ +R+E ++ E ++++ LA IT Sbjct: 284 PDLETRQAILIEKGRELGVQMPSDVVEFVARRIESNIRELEGALNRIVALAQLTHQPITL 343 Query: 233 SLAAEVLKE 241 +LA E L+E Sbjct: 344 ALAVEALRE 352 >gi|183980036|ref|YP_001848327.1| chromosomal replication initiator protein DnaA [Mycobacterium marinum M] gi|226735828|sp|B2HI46|DNAA_MYCMM RecName: Full=Chromosomal replication initiator protein DnaA gi|183173362|gb|ACC38472.1| Chromosomal replication initiator protein DnaA [Mycobacterium marinum M] Length = 510 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 35/233 (15%), Positives = 86/233 (36%), Gaps = 28/233 (12%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRF 93 + D ++ ++ A + P+R + + G SG GK+ L + + F Sbjct: 174 RYTFDTFVIGASNRFAHAATLAIAEAPARAYNPLFIWGESGLGKTHLLHA-AGNYAQRLF 232 Query: 94 SNI---AKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFHI 129 + S + D + L++DI ++ + + FH Sbjct: 233 PGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHT 292 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N++H + +++++ P L +R + + + P+ + ++ K Sbjct: 293 FNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQME 352 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ + + I +ER++ E + ++ A I ++LA VL++ Sbjct: 353 RLAVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDL 405 >gi|312888502|ref|ZP_07748073.1| chromosomal replication initiator protein DnaA [Mucilaginibacter paludis DSM 18603] gi|311299000|gb|EFQ76098.1| chromosomal replication initiator protein DnaA [Mucilaginibacter paludis DSM 18603] Length = 475 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 39/260 (15%), Positives = 85/260 (32%), Gaps = 39/260 (15%) Query: 10 FFVPDKQKND-QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-- 66 F +P +K P QL + + + A + + P Sbjct: 124 FVIPGLKKLQVDP-----QL------NQNYTFESFIEGDCNRLARSAGYAVAAKPGGTSF 172 Query: 67 --VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDT 107 +++ G G GK+ LA +K + + + ++ Sbjct: 173 NPLMIYGGVGLGKTHLAQAIGNEIKRTLPDKLVLYVSCEKFTQQFVDALKHNNINDFVNF 232 Query: 108 RKPV---LLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161 + + +++D+ + FHI N +HQ L++T+ P L SR Sbjct: 233 YQAIDVLIMDDVHNFAGKEKTQDFFFHIFNHLHQSGKQLIITSDKAPKDLAGLEERLLSR 292 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 K + +PD + ++ I + ++ Y+ ++ ++ E + + Sbjct: 293 FKWGLSADLQIPDLETRMAILKTKIYQDGIDLPYEVIEYVAHNIDNNVRELEGAMVSLLA 352 Query: 222 LALSRGMGITRSLAAEVLKE 241 + I +LA +LK Sbjct: 353 QSTLNRKEIDLNLAKSMLKN 372 >gi|311112571|ref|YP_003983793.1| DNA-directed DNA replication initiator protein [Rothia dentocariosa ATCC 17931] gi|310944065|gb|ADP40359.1| DNA-directed DNA replication initiator protein [Rothia dentocariosa ATCC 17931] Length = 553 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 83/234 (35%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90 + D ++ + A + P+ + + G SG GK+ L + ++ Sbjct: 212 NPNYTFDTFVIGQSNRFAHAAAFAVSESPAQAYNPLFIYGDSGLGKTHLLHAIGHYAKHL 271 Query: 91 -----TRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDFND---TQLFH 128 R+ N + + + R +L++DI L + + FH Sbjct: 272 FPSLRVRYVNSEEFTNDFINSIRDDEGSSFKQIYRNVDMLLIDDIQFLAGKEHTQEEFFH 331 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H + +++T+ P + SR + + + P+ + ++ K Sbjct: 332 TFNALHNHQKQVVITSDLPPKQLTGFAERMRSRFEWGLITDVQPPELETRIAILRKKAQS 391 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + YI + ++ E + ++ A + +LA VLK+ Sbjct: 392 ESLNVPDDVMEYIASHITANIRELEGALIRVTAFASLNKQPVDVALAEVVLKDL 445 >gi|319651099|ref|ZP_08005233.1| chromosomal replication initiator protein dnaA [Bacillus sp. 2_A_57_CT2] gi|317397269|gb|EFV77973.1| chromosomal replication initiator protein dnaA [Bacillus sp. 2_A_57_CT2] Length = 448 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 42/240 (17%), Positives = 90/240 (37%), Gaps = 27/240 (11%) Query: 28 LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW 84 L + + D ++ S A + P++ + + G G GK+ L + Sbjct: 107 LPLTM-LNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAI 165 Query: 85 -----------------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND- 123 S+K + ++I + D + V L++DI L + Sbjct: 166 GHYVLDHNPSAKVVYLSSEKFTNEFINSIRDNKAGDFRDKYRNVDVLLIDDIQFLAGKEQ 225 Query: 124 --TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 + FH N++H+ +++++ P L SR + + I+ PD + + Sbjct: 226 TQEEFFHTFNTLHEESKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAI 285 Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + K + I ++ YI +++ ++ E + ++ + I LAAE LK+ Sbjct: 286 LRKKAKAEGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINADLAAEALKD 345 >gi|260774541|ref|ZP_05883454.1| chromosomal replication initiator protein dnaA [Vibrio metschnikovii CIP 69.14] gi|260610447|gb|EEX35653.1| chromosomal replication initiator protein dnaA [Vibrio metschnikovii CIP 69.14] Length = 311 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 37/206 (17%), Positives = 81/206 (39%), Gaps = 23/206 (11%) Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDK-------------SRSTRFSNIAKSLDSILID 106 P + L G +G GK+ L + + ++ K+L + I+ Sbjct: 5 PGAAYNPLFLYGGTGLGKTHLLHAVGNAIVDNKPNAKVVYMHSERFVQDMVKALQNNAIE 64 Query: 107 -------TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156 + +L++DI + + FH N++ + + +++T+ +P Sbjct: 65 EFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVED 124 Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216 L SR V I P+ + +++ D QI + ++A +I +R+ ++ E + Sbjct: 125 RLKSRFGWGLTVAIEPPELETRVAILMTKAEDHQIHLPDEVAFFIAKRLRSNVRELEGAL 184 Query: 217 DKMDNLALSRGMGITRSLAAEVLKET 242 +++ A G IT E L++ Sbjct: 185 NRVIANANFTGRPITIDFVREALRDL 210 >gi|163845604|ref|YP_001633648.1| chromosomal replication initiation protein [Chloroflexus aurantiacus J-10-fl] gi|222523303|ref|YP_002567773.1| chromosomal replication initiation protein [Chloroflexus sp. Y-400-fl] gi|189044632|sp|A9WAN1|DNAA_CHLAA RecName: Full=Chromosomal replication initiator protein DnaA gi|254777893|sp|B9LFG0|DNAA_CHLSY RecName: Full=Chromosomal replication initiator protein DnaA gi|163666893|gb|ABY33259.1| chromosomal replication initiator protein DnaA [Chloroflexus aurantiacus J-10-fl] gi|222447182|gb|ACM51448.1| chromosomal replication initiator protein DnaA [Chloroflexus sp. Y-400-fl] Length = 479 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 82/234 (35%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKS--R 89 + +V S+ A + P + + L G G GK+ L + ++ R Sbjct: 141 NPRYTFSSFIVGSSNRLAHAACLAVADNPGQAYNPLFLYGGVGLGKTHLLHAIGNRVLDR 200 Query: 90 STRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFH 128 + + S + D + L++DI + D + FH Sbjct: 201 DPEINVLYVSSEKFTNDLINAIRRQQTEEFRMRYRNIDVLLIDDIQFIAGKDATQEEFFH 260 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H +++++ P + L SR + +V + PD + ++ Sbjct: 261 TFNTLHSAAKHIVISSDRPPKAILTLEERLRSRFEWGLIVDVQPPDLETRTAILRAKAEQ 320 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + ++ ++ +++ ++ E ++++ A IT A L + Sbjct: 321 MSVHVPDEVIDFLAHKIQSNIRELEGSLNRVAAYAELNRAPITIETATAALADL 374 >gi|322417546|ref|YP_004196769.1| chromosomal replication initiator protein DnaA [Geobacter sp. M18] gi|320123933|gb|ADW11493.1| chromosomal replication initiator protein DnaA [Geobacter sp. M18] Length = 465 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 38/243 (15%), Positives = 93/243 (38%), Gaps = 29/243 (11%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP---SRVVILVGPSGSGKSCLA 81 EQ+ + + + + + A + + P + + G G GK+ L Sbjct: 124 PEQVP---NLNPKYTFESFVSGPSNQFAYAASQAVANKPATNYNPLFIYGGVGLGKTHLV 180 Query: 82 NIWSDKSRS------TRFSNIAKSLDSILIDTR--------------KPVLLEDIDLLDF 121 N ++ + + + K ++ ++ R +L++DI + Sbjct: 181 NAIGNQILAKNPKAKICYYSSEKFMNEMINSLRYKKMDEFRNKFRKMDLLLIDDIQFMAG 240 Query: 122 ND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178 + + FH N++++ +++T+ FP L SR + + I P + Sbjct: 241 KEATQEEFFHTFNALYESHKQIVVTSDKFPKDIPGLEERLRSRFEWGLIADIQPPGVETK 300 Query: 179 EKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238 ++ K + + +A ++ + ++ E ++ +++ A G IT S+A EV Sbjct: 301 VAILKKKSDMHAVNLPDDVALFLAEGATSNIRELEGMLIRLEAFASLTGQEITLSMAREV 360 Query: 239 LKE 241 +K+ Sbjct: 361 MKD 363 >gi|189423083|ref|YP_001950260.1| chromosomal replication initiation protein [Geobacter lovleyi SZ] gi|189419342|gb|ACD93740.1| Chromosomal replication initiator DnaA [Geobacter lovleyi SZ] Length = 459 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 88/235 (37%), Gaps = 26/235 (11%) Query: 33 PRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW----- 84 P + D + + + A + P+ + + G G GKS L N Sbjct: 123 PLNPRYTFDQFVSGAGNQFAHAAAMAVSHNPAITYNPLFIYGGVGLGKSHLLNAVGHKII 182 Query: 85 ------------SDKSRSTRFSNIAKSLDSILID---TRKPVLLEDIDLLDFNDT---QL 126 ++K + I + + + +L++DI + + + Sbjct: 183 SDNSSTKICYCSAEKFMHEMVNCIKLNKMDEFRERFRSIDVLLIDDIQFITGKERTQVEF 242 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH N++++ +++T+ FP L SR + + I PD + ++ K Sbjct: 243 FHTFNALYESHKQIVITSDKFPREMPNLEDRLRSRFEWGLIADIQPPDLETKIAILKKKA 302 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 +I + +A ++ R++ E ++ ++ + + + IT ++A LK+ Sbjct: 303 DTNRILLPDDVAYFLASSDTRNIRELEGMLIRLGAYSSLQHIPITLTMAQNNLKD 357 >gi|126651995|ref|ZP_01724187.1| chromosomal replication initiation protein [Bacillus sp. B14905] gi|126591264|gb|EAZ85373.1| chromosomal replication initiation protein [Bacillus sp. B14905] Length = 449 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 36/233 (15%), Positives = 86/233 (36%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW-----SD 86 + D ++ S A + P++ + G G GK+ L + Sbjct: 114 NPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPFFIYGGVGLGKTHLMHAIGHYVLEH 173 Query: 87 KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 + ++ + I++ + +L++DI L + + FH Sbjct: 174 NPNAKVVYLSSEKFTNEFINSIRDNKALDFRNKYRNVDVLLIDDIQFLAGKESTQEEFFH 233 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H+ +++++ P L SR + + I+ PD + ++ K Sbjct: 234 TFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDIAPPDLETRIAILRKKAKA 293 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + + ++ YI +++ ++ E + ++ + I +LAAE LK+ Sbjct: 294 DGLEVPNEVMLYIANQIDSNIRELEGALIRVVAYSSLVNKDINATLAAEALKD 346 >gi|108796982|ref|YP_637179.1| chromosomal replication initiation protein [Mycobacterium sp. MCS] gi|119866066|ref|YP_936018.1| chromosomal replication initiation protein [Mycobacterium sp. KMS] gi|126432614|ref|YP_001068305.1| chromosomal replication initiation protein [Mycobacterium sp. JLS] gi|123179824|sp|Q1BG61|DNAA_MYCSS RecName: Full=Chromosomal replication initiator protein DnaA gi|166214681|sp|A3PSD7|DNAA_MYCSJ RecName: Full=Chromosomal replication initiator protein DnaA gi|166214682|sp|A1U8S0|DNAA_MYCSK RecName: Full=Chromosomal replication initiator protein DnaA gi|108767401|gb|ABG06123.1| chromosomal replication initiator protein DnaA [Mycobacterium sp. MCS] gi|119692155|gb|ABL89228.1| chromosomal replication initiator protein DnaA [Mycobacterium sp. KMS] gi|126232414|gb|ABN95814.1| chromosomal replication initiator protein DnaA [Mycobacterium sp. JLS] Length = 495 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 38/251 (15%), Positives = 93/251 (37%), Gaps = 26/251 (10%) Query: 18 NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSG 74 + P+ + + + D ++ ++ A + P+R + + G SG Sbjct: 140 SRPPETPAAEDPNAVSLNRRYTFDTFVIGASNRFAHAATLAIAEAPARAYNPLFIWGESG 199 Query: 75 SGKSCLANIWSDKSRS---------TRFSNIAKSLDSILIDTRKP-----------VLLE 114 GK+ L + + ++ + L D RK +L++ Sbjct: 200 LGKTHLLHAAGNYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKASFKRSYRDIDVLLVD 259 Query: 115 DIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 DI ++ + + FH N++H + +++++ P L +R + + + Sbjct: 260 DIQFIEGKEGIQEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQ 319 Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231 P+ + ++ K ++ + + I +ER++ E + ++ A I Sbjct: 320 PPELETRIAILRKKAQMDRLDVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPID 379 Query: 232 RSLAAEVLKET 242 +SLA VL++ Sbjct: 380 KSLAEIVLRDL 390 >gi|118474040|ref|YP_891139.1| chromosomal replication initiation protein [Mycobacterium smegmatis str. MC2 155] gi|152013510|sp|A0R7K1|DNAA_MYCS2 RecName: Full=Chromosomal replication initiator protein DnaA gi|152013511|sp|P0C557|DNAA_MYCSM RecName: Full=Chromosomal replication initiator protein DnaA gi|1321893|emb|CAA63248.1| dnaA [Mycobacterium smegmatis] gi|118175327|gb|ABK76223.1| chromosomal replication initiator protein DnaA [Mycobacterium smegmatis str. MC2 155] Length = 504 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 88/232 (37%), Gaps = 26/232 (11%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRS--- 90 + D ++ ++ A + P+R + + G SG GK+ L + + ++ Sbjct: 168 RYTFDTFVIGASNRFAHAATLAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFP 227 Query: 91 ------TRFSNIAKSLDSILIDTRKP-----------VLLEDIDLLDFND---TQLFHII 130 + L D RK +L++DI ++ + + FH Sbjct: 228 GMRVKYVSTEEFTNDFINSLRDDRKASFKRSYRDIDILLVDDIQFIEGKEGIQEEFFHTF 287 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N++H + +++++ P L +R + + + P+ + ++ K + Sbjct: 288 NTLHNSNKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMDR 347 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + I +ER++ E + ++ A I RSLA VL++ Sbjct: 348 LDVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTRIDRSLAEVVLRDL 399 >gi|15595199|ref|NP_064721.1| chromosomal replication initiation protein [Pseudomonas aeruginosa PAO1] gi|116053721|ref|YP_788156.1| chromosomal replication initiation protein [Pseudomonas aeruginosa UCBPP-PA14] gi|218888747|ref|YP_002437611.1| chromosomal replication initiation protein [Pseudomonas aeruginosa LESB58] gi|254243115|ref|ZP_04936437.1| chromosomal replication initiator protein DnaA [Pseudomonas aeruginosa 2192] gi|14194675|sp|Q9I7C5|DNAA_PSEAE RecName: Full=Chromosomal replication initiator protein DnaA gi|122262144|sp|Q02V80|DNAA_PSEAB RecName: Full=Chromosomal replication initiator protein DnaA gi|226735834|sp|B7V0N6|DNAA_PSEA8 RecName: Full=Chromosomal replication initiator protein DnaA gi|9945819|gb|AAG03391.1|AE004440_1 chromosomal replication initiator protein DnaA [Pseudomonas aeruginosa PAO1] gi|11067000|gb|AAG28797.1|AF229442_1 DnaA [Pseudomonas aeruginosa] gi|115588942|gb|ABJ14957.1| chromosomal replication initiator protein DnaA [Pseudomonas aeruginosa UCBPP-PA14] gi|126196493|gb|EAZ60556.1| chromosomal replication initiator protein DnaA [Pseudomonas aeruginosa 2192] gi|218768970|emb|CAW24728.1| chromosomal replication initiator protein DnaA [Pseudomonas aeruginosa LESB58] Length = 514 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 37/235 (15%), Positives = 85/235 (36%), Gaps = 34/235 (14%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPS-----RVVILVGPSGSGKSCLANIW-------- 84 + ++ + + + A +W + + L G G GK+ L + Sbjct: 183 FTFENFVEGKSNQLARAA--AWQVADNLKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKN 240 Query: 85 --------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLF 127 +D ++ + + I + + +L++DI + + F Sbjct: 241 PNAKVVYLHSERFVADMVKALQLNAINEFKR--FYRSVDALLIDDIQFFARKERSQEEFF 298 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + +++T+ +P L SR V + P+ + +++K Sbjct: 299 HTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAE 358 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +I + A +I QR+ ++ E + ++ + G IT L E LK+ Sbjct: 359 QAKIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELIRESLKDL 413 >gi|304382865|ref|ZP_07365348.1| DNA-directed DNA replication initiator protein [Prevotella marshii DSM 16973] gi|304336050|gb|EFM02297.1| DNA-directed DNA replication initiator protein [Prevotella marshii DSM 16973] Length = 489 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 39/262 (14%), Positives = 80/262 (30%), Gaps = 35/262 (13%) Query: 13 PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVR----LIDSWPSWPSRVVI 68 P P+ E QL + + + + + + + + Sbjct: 136 PSVLDAAMPQQIESQL------NPHQTFRNFIEGDSNKLPRSVGMSIAEHPEGTQFNPMF 189 Query: 69 LVGPSGSGKSCL---------------------ANIWSDKSRSTRFSNIAKSLDSILIDT 107 + GPSG GK+ L A ++ + + N T Sbjct: 190 IYGPSGCGKTHLINAIGVRTKELYPEKRVLYISARLFQVQFTNAVLQNSTNDF-INFYQT 248 Query: 108 RKPVLLEDID---LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164 +L++DI FHI N + + +++ PV L +R Sbjct: 249 IDLLLVDDIQEWMTATKTQDTFFHIFNHLFRNGKRIVLACDRPPVELKGMNDRLLTRFSC 308 Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 + ++ P+ ++ + I + YI Q S+ + +V+ + ++ Sbjct: 309 GLIAELERPNVQLCRNILDTEIRREGLKIPADVVEYIAQTANESVRDLQGVVNSLMAYSV 368 Query: 225 SRGMGITRSLAAEVLKETQQCD 246 I LA V+K + D Sbjct: 369 VYNSNIDMRLAERVIKRAVKVD 390 >gi|313111477|ref|ZP_07797278.1| chromosomal replication initiator protein DnaA [Pseudomonas aeruginosa 39016] gi|310883780|gb|EFQ42374.1| chromosomal replication initiator protein DnaA [Pseudomonas aeruginosa 39016] Length = 512 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 37/235 (15%), Positives = 85/235 (36%), Gaps = 34/235 (14%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPS-----RVVILVGPSGSGKSCLANIW-------- 84 + ++ + + + A +W + + L G G GK+ L + Sbjct: 181 FTFENFVEGKSNQLARAA--AWQVADNLKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKN 238 Query: 85 --------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLF 127 +D ++ + + I + + +L++DI + + F Sbjct: 239 PNAKVVYLHSERFVADMVKALQLNAINEFKR--FYRSVDALLIDDIQFFARKERSQEEFF 296 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + +++T+ +P L SR V + P+ + +++K Sbjct: 297 HTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAE 356 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +I + A +I QR+ ++ E + ++ + G IT L E LK+ Sbjct: 357 QAKIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELIRESLKDL 411 >gi|118615920|ref|YP_904252.1| chromosomal replication initiation protein [Mycobacterium ulcerans Agy99] gi|166214684|sp|A0PKB2|DNAA_MYCUA RecName: Full=Chromosomal replication initiator protein DnaA gi|118568030|gb|ABL02781.1| chromosomal replication initiator protein DnaA [Mycobacterium ulcerans Agy99] Length = 510 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 35/233 (15%), Positives = 86/233 (36%), Gaps = 28/233 (12%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRF 93 + D ++ ++ A + P+R + + G SG GK+ L + + F Sbjct: 174 RYTFDTFVIGASNRFAHAATLAIAEAPARAYNPLFIWGESGLGKTHLLHA-AGNYAQRLF 232 Query: 94 SNI---AKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFHI 129 + S + D + L++DI ++ + + FH Sbjct: 233 PGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHT 292 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N++H + +++++ P L +R + + + P+ + ++ K Sbjct: 293 FNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQME 352 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ + + I +ER++ E + ++ A I ++LA VL++ Sbjct: 353 RLAVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDL 405 >gi|145628065|ref|ZP_01783866.1| chromosomal replication initiation protein [Haemophilus influenzae 22.1-21] gi|144979840|gb|EDJ89499.1| chromosomal replication initiation protein [Haemophilus influenzae 22.1-21] gi|301169719|emb|CBW29320.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Haemophilus influenzae 10810] Length = 454 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 90/229 (39%), Gaps = 27/229 (11%) Query: 40 RDDLLVHSAIEQAVRL---IDSWPSWPS-RVVILVGPSGSGKSCLAN-----IWSDKSRS 90 D+ + + + A + + P PS L G +G GK+ L + I ++K + Sbjct: 125 FDNFVEGKSNQLARAVGQKLAQAPGEPSANPFFLYGGTGLGKTHLLHAIGNGILANKPNA 184 Query: 91 TRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINS 132 A + ++ + +L++DI + + FHI N+ Sbjct: 185 RVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFFAEKEKTQEEFFHIFNN 244 Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 + + +++T+ +P L SR I PD + +++K + + Sbjct: 245 LFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNMN 304 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + +++A +I QR+ ++ E ++++ + +G I + LK+ Sbjct: 305 LPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353 >gi|329123016|ref|ZP_08251587.1| DNA-directed DNA replication initiator protein [Haemophilus aegyptius ATCC 11116] gi|327471947|gb|EGF17387.1| DNA-directed DNA replication initiator protein [Haemophilus aegyptius ATCC 11116] Length = 454 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 90/229 (39%), Gaps = 27/229 (11%) Query: 40 RDDLLVHSAIEQAVRL---IDSWPSWPS-RVVILVGPSGSGKSCLAN-----IWSDKSRS 90 D+ + + + A + + P PS L G +G GK+ L + I +DK + Sbjct: 125 FDNFVEGKSNQLARAVGQKLAQAPGEPSANPFFLYGGTGLGKTHLLHAIGNGILADKPNA 184 Query: 91 TRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINS 132 A + +I + +L++DI + + FHI N+ Sbjct: 185 RVLYIHANNFMQHMIKAVRDNKMDQFKKFYRSLDALLVDDIQFFAEKEKTQEEFFHIFNN 244 Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 + + +++T+ +P L SR I PD + +++K + + Sbjct: 245 LFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNMN 304 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + +++A +I QR+ ++ E ++++ + +G I + LK+ Sbjct: 305 LPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353 >gi|219846957|ref|YP_002461390.1| chromosomal replication initiation protein [Chloroflexus aggregans DSM 9485] gi|254777892|sp|B8GBK7|DNAA_CHLAD RecName: Full=Chromosomal replication initiator protein DnaA gi|219541216|gb|ACL22954.1| chromosomal replication initiator protein DnaA [Chloroflexus aggregans DSM 9485] Length = 478 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 36/251 (14%), Positives = 87/251 (34%), Gaps = 31/251 (12%) Query: 23 NKEEQLFFSFPRC-----LGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSG 74 + QL + + +V S+ A + P + + L G G Sbjct: 122 ERAVQLDLASAMRSGMLNPRYTFASFIVGSSNRLAHAACLAVADNPGQAYNPLFLYGGVG 181 Query: 75 SGKSCLANIWSDKS--RSTRFSNIAKSLDSILIDTRKPV------------------LLE 114 GK+ L + ++ R + + S + D + L++ Sbjct: 182 LGKTHLLHAIGNRVLDRDPEINVLYVSSEKFTNDLINAIRRQQTEEFRMRYRNIDVLLID 241 Query: 115 DIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 DI + D + FH N++H +++++ P + L SR + +V + Sbjct: 242 DIQFIAGKDATQEEFFHTFNTLHSAAKHIVISSDRPPKAILTLEERLRSRFEWGLIVDVQ 301 Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231 PD + ++ + + ++ ++ +++ ++ E ++++ A + IT Sbjct: 302 PPDLETRTAILRAKAEQMSVHVPDEVIDFLAHKIQSNIRELEGSLNRVAAYAELNRLPIT 361 Query: 232 RSLAAEVLKET 242 A L + Sbjct: 362 IDTATAALADL 372 >gi|323463201|gb|ADX75354.1| chromosomal replication initiator protein DnaA [Staphylococcus pseudintermedius ED99] Length = 447 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 45/270 (16%), Positives = 97/270 (35%), Gaps = 35/270 (12%) Query: 10 FFVPDKQKNDQPKNKEEQLFFSFPRCLGIS---------RDDLLVHSAIE---QAVRLID 57 F + + + QL S P +S + ++ A + Sbjct: 78 FITEEDLQELNVASSSHQLGHSTPVEPVVSGEQFNTNNTFETFVIGPGNRFPHAASLAVA 137 Query: 58 SWPSWPSRVVILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSL 100 P+ + + G G GK+ L + S+K + +I + Sbjct: 138 ESPANAYNPLFIYGGVGLGKTHLMHAIGHYVLENNPDAKVLYTSSEKFTNEFIQSIRNND 197 Query: 101 DSILIDTRKPV---LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + + L++DI + + + FH N +HQ +++++ P Sbjct: 198 TESFREKYRNIDILLIDDIQFIQKKEQTQEEFFHTFNDLHQNKKQIVISSDRPPKEISTL 257 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 L SR + +V I+ PD + ++ K + + I + YI +++ ++ E Sbjct: 258 EERLKSRFQWGLIVDITPPDFETRMAILQKKTEEENLDIPIESLTYIANQIQTNIRELEG 317 Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 + ++ + +G IT L A+ LK+ Q Sbjct: 318 ALTRVLAYSKLQGKPITTELTADALKDIIQ 347 >gi|229015406|ref|ZP_04172412.1| Chromosomal replication initiator protein dnaA [Bacillus cereus AH1273] gi|229026930|ref|ZP_04183253.1| Chromosomal replication initiator protein dnaA [Bacillus cereus AH1272] gi|228734388|gb|EEL85059.1| Chromosomal replication initiator protein dnaA [Bacillus cereus AH1272] gi|228745885|gb|EEL95881.1| Chromosomal replication initiator protein dnaA [Bacillus cereus AH1273] Length = 446 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 37/232 (15%), Positives = 86/232 (37%), Gaps = 26/232 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86 + D ++ S A + P++ + + G G GK+ L + + Sbjct: 112 NPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIEH 171 Query: 87 KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 + ++ + I++ + +L++DI L + + FH Sbjct: 172 NPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFH 231 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H+ +++++ P L SR + + I+ PD + ++ K Sbjct: 232 TFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 291 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + I ++ YI +++ ++ E + ++ + I LAAE LK Sbjct: 292 EGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINADLAAEALK 343 >gi|329894830|ref|ZP_08270630.1| Chromosomal replication initiator protein DnaA [gamma proteobacterium IMCC3088] gi|328922724|gb|EGG30058.1| Chromosomal replication initiator protein DnaA [gamma proteobacterium IMCC3088] Length = 483 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 33/233 (14%), Positives = 80/233 (34%), Gaps = 26/233 (11%) Query: 36 LGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIW-----SDK 87 S + + + + A+ P + + G G GK+ L + D Sbjct: 150 EHYSFESFVEGKSNQLALAAARQVKDNPGFAYNPLFIYGGVGLGKTHLMHAVGNALRQDN 209 Query: 88 SRSTRFSNIAKSLDSILIDT---------------RKPVLLEDIDLLDFND---TQLFHI 129 + ++ + ++ +L++DI + + FH Sbjct: 210 PNANIIYLHSERFVADMVKALQLNAISDFKRYYRSVDALLIDDIQFFAGKERSQEEFFHT 269 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N++ + +++T +P L SR V + P+ + +++K Sbjct: 270 FNALLEGGHQMILTCDRYPKEIDGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAHQI 329 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +F+ + A +I QR+ ++ E + ++ A I ++ + LK+ Sbjct: 330 GVFLPEDAAFFIAQRIRSNVRELEGALKRVIASAHFHQKPIDIAMVKDSLKDL 382 >gi|328676079|gb|AEB26949.1| Chromosomal replication initiator protein DnaA [Francisella cf. novicida Fx1] Length = 463 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 39/243 (16%), Positives = 89/243 (36%), Gaps = 26/243 (10%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN 82 E+ F P D +V A + A P ++ + + G SG GK+ L Sbjct: 120 EEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLHNPLFIYGGSGLGKTHLMQ 179 Query: 83 IWSDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFN 122 + +R + +S + + +L++DI + Sbjct: 180 AIGNHAREVNPNAKIIYTNSEQFIKDYVNSIRLQDQDEFQRVYRSADILLIDDIQFIAGK 239 Query: 123 D---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179 + + FH N++++ +++T+ +P L SR V + +PD + Sbjct: 240 EGTAQEFFHTFNALYENGKQIILTSDKYPNEIEGLEERLVSRFGYGLTVSVDMPDLETRI 299 Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 +++K D + + AA+I + + ++ E ++++ + T +A L Sbjct: 300 AILLKKAHDLGQKLPNETAAFIAENVRTNVRELEGALNRVLTTSKFNHKDPTIEVAQACL 359 Query: 240 KET 242 ++ Sbjct: 360 RDV 362 >gi|194323922|ref|ZP_03057697.1| chromosomal replication initiator protein DnaA [Francisella tularensis subsp. novicida FTE] gi|194321819|gb|EDX19302.1| chromosomal replication initiator protein DnaA [Francisella tularensis subsp. novicida FTE] Length = 463 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 39/243 (16%), Positives = 89/243 (36%), Gaps = 26/243 (10%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN 82 E+ F P D +V A + A P ++ + + G SG GK+ L Sbjct: 120 EEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLHNPLFIYGGSGLGKTHLMQ 179 Query: 83 IWSDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFN 122 + +R + +S + + +L++DI + Sbjct: 180 AIGNHAREVNPNAKIIYTNSEQFIKDYVNSIRLQDQDEFQRVYRSADILLIDDIQFIAGK 239 Query: 123 D---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179 + + FH N++++ +++T+ +P L SR V + +PD + Sbjct: 240 EGTAQEFFHTFNALYENGKQIILTSDKYPNEIEGLEERLVSRFGYGLTVSVDMPDLETRI 299 Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 +++K D + + AA+I + + ++ E ++++ + T +A L Sbjct: 300 AILLKKAHDLGQKLPNETAAFIAENVRTNVRELEGALNRVLTTSKFNHKDPTIEVAQACL 359 Query: 240 KET 242 ++ Sbjct: 360 RDV 362 >gi|167011107|ref|ZP_02276038.1| chromosomal replication initiator protein dnaA [Francisella tularensis subsp. holarctica FSC200] Length = 432 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 39/243 (16%), Positives = 89/243 (36%), Gaps = 26/243 (10%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN 82 E+ F P D +V A + A P ++ + + G SG GK+ L Sbjct: 148 EEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLHNPLFIYGGSGLGKTHLMQ 207 Query: 83 IWSDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFN 122 + +R + +S + + +L++DI + Sbjct: 208 AIGNHAREVNPNAKIIYTNSEQFIKDYVNSIRLQDQDEFQRVYRSADILLIDDIQFIAGK 267 Query: 123 D---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179 + + FH N++++ +++T+ +P L SR V + +PD + Sbjct: 268 EGTAQEFFHTFNALYENGKQIILTSDKYPNEIEGLEERLVSRFGYGLTVSVDMPDLETRI 327 Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 +++K D + + AA+I + + ++ E ++++ + T +A L Sbjct: 328 AILLKKAHDLGQKLPNETAAFIAENVRTNVRELEGALNRVLTTSKFNHKDPTIEVAQACL 387 Query: 240 KET 242 ++ Sbjct: 388 RDV 390 >gi|187930914|ref|YP_001890898.1| chromosomal replication initiation protein [Francisella tularensis subsp. mediasiatica FSC147] gi|208780099|ref|ZP_03247442.1| chromosomal replication initiator protein DnaA [Francisella novicida FTG] gi|224458007|ref|ZP_03666480.1| chromosomal replication initiator protein [Francisella tularensis subsp. tularensis MA00-2987] gi|254875662|ref|ZP_05248372.1| chromosomal replication initiator protein dnaA [Francisella tularensis subsp. tularensis MA00-2987] gi|290953775|ref|ZP_06558396.1| chromosomal replication initiation protein [Francisella tularensis subsp. holarctica URFT1] gi|295312853|ref|ZP_06803584.1| chromosomal replication initiation protein [Francisella tularensis subsp. holarctica URFT1] gi|187711823|gb|ACD30120.1| chromosomal replication initiator protein DnaA [Francisella tularensis subsp. mediasiatica FSC147] gi|208744103|gb|EDZ90404.1| chromosomal replication initiator protein DnaA [Francisella novicida FTG] gi|254841661|gb|EET20097.1| chromosomal replication initiator protein dnaA [Francisella tularensis subsp. tularensis MA00-2987] Length = 463 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 39/243 (16%), Positives = 89/243 (36%), Gaps = 26/243 (10%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN 82 E+ F P D +V A + A P ++ + + G SG GK+ L Sbjct: 120 EEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLHNPLFIYGGSGLGKTHLMQ 179 Query: 83 IWSDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFN 122 + +R + +S + + +L++DI + Sbjct: 180 AIGNHAREVNPNAKIIYTNSEQFIKDYVNSIRLQDQDEFQRVYRSADILLIDDIQFIAGK 239 Query: 123 D---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179 + + FH N++++ +++T+ +P L SR V + +PD + Sbjct: 240 EGTAQEFFHTFNALYENGKQIILTSDKYPNEIEGLEERLVSRFGYGLTVSVDMPDLETRI 299 Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 +++K D + + AA+I + + ++ E ++++ + T +A L Sbjct: 300 AILLKKAHDLGQKLPNETAAFIAENVRTNVRELEGALNRVLTTSKFNHKDPTIEVAQACL 359 Query: 240 KET 242 ++ Sbjct: 360 RDV 362 >gi|134301170|ref|YP_001121138.1| chromosomal replication initiation protein [Francisella tularensis subsp. tularensis WY96-3418] gi|166201884|sp|A4IVR6|DNAA_FRATW RecName: Full=Chromosomal replication initiator protein DnaA gi|134048947|gb|ABO46018.1| chromosomal replication initiator protein DnaA [Francisella tularensis subsp. tularensis WY96-3418] Length = 491 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 39/243 (16%), Positives = 89/243 (36%), Gaps = 26/243 (10%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN 82 E+ F P D +V A + A P ++ + + G SG GK+ L Sbjct: 148 EEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLHNPLFIYGGSGLGKTHLMQ 207 Query: 83 IWSDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFN 122 + +R + +S + + +L++DI + Sbjct: 208 AIGNHAREVNPNAKIIYTNSEQFIKDYVNSIRLQDQDEFQRVYRSADILLIDDIQFIAGK 267 Query: 123 D---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179 + + FH N++++ +++T+ +P L SR V + +PD + Sbjct: 268 EGTAQEFFHTFNALYENGKQIILTSDKYPNEIEGLEERLVSRFGYGLTVSVDMPDLETRI 327 Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 +++K D + + AA+I + + ++ E ++++ + T +A L Sbjct: 328 AILLKKAHDLGQKLPNETAAFIAENVRTNVRELEGALNRVLTTSKFNHKDPTIEVAQACL 387 Query: 240 KET 242 ++ Sbjct: 388 RDV 390 >gi|118496616|ref|YP_897666.1| chromosomal replication initiator protein [Francisella tularensis subsp. novicida U112] gi|166201883|sp|A0Q3U7|DNAA_FRATN RecName: Full=Chromosomal replication initiator protein DnaA gi|118422522|gb|ABK88912.1| chromosomal replication initiator protein [Francisella novicida U112] Length = 491 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 39/243 (16%), Positives = 89/243 (36%), Gaps = 26/243 (10%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN 82 E+ F P D +V A + A P ++ + + G SG GK+ L Sbjct: 148 EEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLHNPLFIYGGSGLGKTHLMQ 207 Query: 83 IWSDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFN 122 + +R + +S + + +L++DI + Sbjct: 208 AIGNHAREVNPNAKIIYTNSEQFIKDYVNSIRLQDQDEFQRVYRSADILLIDDIQFIAGK 267 Query: 123 D---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179 + + FH N++++ +++T+ +P L SR V + +PD + Sbjct: 268 EGTAQEFFHTFNALYENGKQIILTSDKYPNEIEGLEERLVSRFGYGLTVSVDMPDLETRI 327 Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 +++K D + + AA+I + + ++ E ++++ + T +A L Sbjct: 328 AILLKKAHDLGQKLPNETAAFIAENVRTNVRELEGALNRVLTTSKFNHKDPTIEVAQACL 387 Query: 240 KET 242 ++ Sbjct: 388 RDV 390 >gi|115313982|ref|YP_762705.1| chromosomal replication initiation protein [Francisella tularensis subsp. holarctica OSU18] gi|122325952|sp|Q0BPB6|DNAA_FRATO RecName: Full=Chromosomal replication initiator protein DnaA gi|115128881|gb|ABI82068.1| DNA-directed DNA replication initiator protein [Francisella tularensis subsp. holarctica OSU18] Length = 491 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 39/243 (16%), Positives = 89/243 (36%), Gaps = 26/243 (10%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN 82 E+ F P D +V A + A P ++ + + G SG GK+ L Sbjct: 148 EEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLHNPLFIYGGSGLGKTHLMQ 207 Query: 83 IWSDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFN 122 + +R + +S + + +L++DI + Sbjct: 208 AIGNHAREVNPNAKIIYTNSEQFIKDYVNSIRLQDQDEFQRVYRSADILLIDDIQFIAGK 267 Query: 123 D---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179 + + FH N++++ +++T+ +P L SR V + +PD + Sbjct: 268 EGTAQEFFHTFNALYENGKQIILTSDKYPNEIEGLEERLVSRFGYGLTVSVDMPDLETRI 327 Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 +++K D + + AA+I + + ++ E ++++ + T +A L Sbjct: 328 AILLKKAHDLGQKLPNETAAFIAENVRTNVRELEGALNRVLTTSKFNHKDPTIEVAQACL 387 Query: 240 KET 242 ++ Sbjct: 388 RDV 390 >gi|89255450|ref|YP_512811.1| chromosomal replication initiation protein [Francisella tularensis subsp. holarctica LVS] gi|254366860|ref|ZP_04982898.1| chromosomal replication initiator protein dnaA [Francisella tularensis subsp. holarctica 257] gi|123287421|sp|Q2A640|DNAA_FRATH RecName: Full=Chromosomal replication initiator protein DnaA gi|89143281|emb|CAJ78442.1| chromosomal replication initiator protein dnaA [Francisella tularensis subsp. holarctica LVS] gi|134252688|gb|EBA51782.1| chromosomal replication initiator protein dnaA [Francisella tularensis subsp. holarctica 257] Length = 491 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 39/243 (16%), Positives = 89/243 (36%), Gaps = 26/243 (10%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN 82 E+ F P D +V A + A P ++ + + G SG GK+ L Sbjct: 148 EEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLHNPLFIYGGSGLGKTHLMQ 207 Query: 83 IWSDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFN 122 + +R + +S + + +L++DI + Sbjct: 208 AIGNHAREVNPNAKIIYTNSEQFIKDYVNSIRLQDQDEFQRVYRSADILLIDDIQFIAGK 267 Query: 123 D---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179 + + FH N++++ +++T+ +P L SR V + +PD + Sbjct: 268 EGTAQEFFHTFNALYENGKQIILTSDKYPNEIEGLEERLVSRFGYGLTVSVDMPDLETRI 327 Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 +++K D + + AA+I + + ++ E ++++ + T +A L Sbjct: 328 AILLKKAHDLGQKLPNETAAFIAENVRTNVRELEGALNRVLTTSKFNHKDPTIEVAQACL 387 Query: 240 KET 242 ++ Sbjct: 388 RDV 390 >gi|169656467|ref|YP_001427435.2| chromosomal replication initiation protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|61212486|sp|Q5NIQ8|DNAA_FRATT RecName: Full=Chromosomal replication initiator protein DnaA gi|189044725|sp|A7N926|DNAA_FRATF RecName: Full=Chromosomal replication initiator protein DnaA gi|164551535|gb|ABU60479.2| chromosomal replication initiator protein [Francisella tularensis subsp. holarctica FTNF002-00] Length = 491 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 39/243 (16%), Positives = 89/243 (36%), Gaps = 26/243 (10%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN 82 E+ F P D +V A + A P ++ + + G SG GK+ L Sbjct: 148 EEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLHNPLFIYGGSGLGKTHLMQ 207 Query: 83 IWSDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFN 122 + +R + +S + + +L++DI + Sbjct: 208 AIGNHAREVNPNAKIIYTNSEQFIKDYVNSIRLQDQDEFQRVYRSADILLIDDIQFIAGK 267 Query: 123 D---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179 + + FH N++++ +++T+ +P L SR V + +PD + Sbjct: 268 EGTAQEFFHTFNALYENGKQIILTSDKYPNEIEGLEERLVSRFGYGLTVSVDMPDLETRI 327 Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 +++K D + + AA+I + + ++ E ++++ + T +A L Sbjct: 328 AILLKKAHDLGQKLPNETAAFIAENVRTNVRELEGALNRVLTTSKFNHKDPTIEVAQACL 387 Query: 240 KET 242 ++ Sbjct: 388 RDV 390 >gi|56707188|ref|YP_169084.1| chromosomal replication initiation protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110669658|ref|YP_666215.1| chromosomal replication initiation protein [Francisella tularensis subsp. tularensis FSC198] gi|254368432|ref|ZP_04984449.1| chromosomal replication initiator protein dnaA [Francisella tularensis subsp. holarctica FSC022] gi|254371402|ref|ZP_04987403.1| chromosomal replication initiator protein dnaA [Francisella tularensis subsp. tularensis FSC033] gi|254372003|ref|ZP_04987496.1| chromosomal replication initiator protein dnaA [Francisella tularensis subsp. novicida GA99-3549] gi|254375145|ref|ZP_04990625.1| chromosomal replication initiator protein dnaA [Francisella novicida GA99-3548] gi|56603680|emb|CAG44634.1| chromosomal replication initiator protein dnaA [Francisella tularensis subsp. tularensis SCHU S4] gi|110319991|emb|CAL08017.1| chromosomal replication initiator protein dnaA [Francisella tularensis subsp. tularensis FSC198] gi|151569641|gb|EDN35295.1| chromosomal replication initiator protein dnaA [Francisella tularensis subsp. tularensis FSC033] gi|151569734|gb|EDN35388.1| chromosomal replication initiator protein dnaA [Francisella novicida GA99-3549] gi|151572863|gb|EDN38517.1| chromosomal replication initiator protein dnaA [Francisella novicida GA99-3548] gi|157121326|gb|EDO65527.1| chromosomal replication initiator protein dnaA [Francisella tularensis subsp. holarctica FSC022] gi|282158287|gb|ADA77678.1| chromosomal replication initiator protein dnaA [Francisella tularensis subsp. tularensis NE061598] Length = 506 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 39/243 (16%), Positives = 89/243 (36%), Gaps = 26/243 (10%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN 82 E+ F P D +V A + A P ++ + + G SG GK+ L Sbjct: 163 EEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLHNPLFIYGGSGLGKTHLMQ 222 Query: 83 IWSDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFN 122 + +R + +S + + +L++DI + Sbjct: 223 AIGNHAREVNPNAKIIYTNSEQFIKDYVNSIRLQDQDEFQRVYRSADILLIDDIQFIAGK 282 Query: 123 D---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179 + + FH N++++ +++T+ +P L SR V + +PD + Sbjct: 283 EGTAQEFFHTFNALYENGKQIILTSDKYPNEIEGLEERLVSRFGYGLTVSVDMPDLETRI 342 Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 +++K D + + AA+I + + ++ E ++++ + T +A L Sbjct: 343 AILLKKAHDLGQKLPNETAAFIAENVRTNVRELEGALNRVLTTSKFNHKDPTIEVAQACL 402 Query: 240 KET 242 ++ Sbjct: 403 RDV 405 >gi|145632379|ref|ZP_01788114.1| chromosomal replication initiation protein [Haemophilus influenzae 3655] gi|144987286|gb|EDJ93816.1| chromosomal replication initiation protein [Haemophilus influenzae 3655] Length = 454 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 90/229 (39%), Gaps = 27/229 (11%) Query: 40 RDDLLVHSAIEQAVRL---IDSWPSWPS-RVVILVGPSGSGKSCLAN-----IWSDKSRS 90 D+ + + + A + + P PS L G +G GK+ L + I +DK + Sbjct: 125 FDNFVEGKSNQLARAVGQKLAQAPGEPSANPFFLYGGTGLGKTHLLHAIGNGILADKPNA 184 Query: 91 TRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINS 132 A + ++ + +L++DI + + FHI NS Sbjct: 185 RVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFFAEKEKTQEEFFHIFNS 244 Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 + + +++T+ +P L SR I PD + +++K + + Sbjct: 245 LFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNMN 304 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + +++A +I QR+ ++ E ++++ + +G I + LK+ Sbjct: 305 LPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353 >gi|16272931|ref|NP_439156.1| chromosomal replication initiation protein [Haemophilus influenzae Rd KW20] gi|260580084|ref|ZP_05847914.1| chromosomal replication initiator protein DnaA [Haemophilus influenzae RdAW] gi|319897495|ref|YP_004135692.1| chromosomal replication initiator protein dnaa, DNA-binding transcriptional dual regulator [Haemophilus influenzae F3031] gi|1169364|sp|P43742|DNAA_HAEIN RecName: Full=Chromosomal replication initiator protein DnaA gi|1574023|gb|AAC22655.1| chromosomal replication initiator protein (dnaA) [Haemophilus influenzae Rd KW20] gi|260093368|gb|EEW77301.1| chromosomal replication initiator protein DnaA [Haemophilus influenzae RdAW] gi|317433001|emb|CBY81372.1| chromosomal replication initiator protein DnaA,DNA-binding transcriptional dual regulator [Haemophilus influenzae F3031] Length = 454 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 90/229 (39%), Gaps = 27/229 (11%) Query: 40 RDDLLVHSAIEQAVRL---IDSWPSWPS-RVVILVGPSGSGKSCLAN-----IWSDKSRS 90 D+ + + + A + + P PS L G +G GK+ L + I +DK + Sbjct: 125 FDNFVEGKSNQLARAVGQKLAQAPGEPSANPFFLYGGTGLGKTHLLHAIGNGILADKPNA 184 Query: 91 TRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINS 132 A + ++ + +L++DI + + FHI NS Sbjct: 185 RVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFFAEKEKTQEEFFHIFNS 244 Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 + + +++T+ +P L SR I PD + +++K + + Sbjct: 245 LFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNMN 304 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + +++A +I QR+ ++ E ++++ + +G I + LK+ Sbjct: 305 LPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353 >gi|145637299|ref|ZP_01792960.1| chromosomal replication initiation protein [Haemophilus influenzae PittHH] gi|145269551|gb|EDK09493.1| chromosomal replication initiation protein [Haemophilus influenzae PittHH] Length = 454 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 90/229 (39%), Gaps = 27/229 (11%) Query: 40 RDDLLVHSAIEQAVRL---IDSWPSWPS-RVVILVGPSGSGKSCLAN-----IWSDKSRS 90 D+ + + + A + + P PS L G +G GK+ L + I +DK + Sbjct: 125 FDNFVEGKSNQLARAVGQKLAQAPGEPSANPFFLYGGTGLGKTHLLHAIGNGILADKPNA 184 Query: 91 TRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINS 132 A + ++ + +L++DI + + FHI NS Sbjct: 185 RVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFFAEKEKTQEEFFHIFNS 244 Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 + + +++T+ +P L SR I PD + +++K + + Sbjct: 245 LFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNMN 304 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + +++A +I QR+ ++ E ++++ + +G I + LK+ Sbjct: 305 LPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353 >gi|330470833|ref|YP_004408576.1| chromosomal replication initiator protein DnaA [Verrucosispora maris AB-18-032] gi|328813804|gb|AEB47976.1| chromosomal replication initiator protein DnaA [Verrucosispora maris AB-18-032] Length = 607 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 89/233 (38%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSD----- 86 + ++ S+ A + P+ + + G SG GK+ L + Sbjct: 270 NPKYMFETFVIGSSNRFAHAASVAVAESPAKAYNPLFIYGSSGLGKTHLLHAIGHYATTL 329 Query: 87 -KSRSTRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDFND---TQLFH 128 +RS R+ + + + + R +L++DI L+ + + FH Sbjct: 330 GNARSVRYVSTEEFTNDFINSLRDDKTSAFQRRYRDVDILLIDDIQFLENRERTQEEFFH 389 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H + +++T+ P L +R + + I PD + ++ K A Sbjct: 390 TFNTLHNANKQIVITSDRSPKQLATLEDRLRTRFEWGLLADIQPPDLETRIAILQKKAAQ 449 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 +++ + +I R+ S+ E + ++ A + SLA EVL++ Sbjct: 450 ERLYAPPDVLEFIASRVSNSIRELEGALIRVTAFASLTRSSVELSLAEEVLRD 502 >gi|309751341|gb|ADO81325.1| Chromosomal replication initiator protein [Haemophilus influenzae R2866] Length = 454 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 90/229 (39%), Gaps = 27/229 (11%) Query: 40 RDDLLVHSAIEQAVRL---IDSWPSWPS-RVVILVGPSGSGKSCLAN-----IWSDKSRS 90 D+ + + + A + + P PS L G +G GK+ L + I ++K + Sbjct: 125 FDNFVEGKSNQLARAVGQKLAQAPGEPSANPFFLYGGTGLGKTHLLHAIGNGILANKPNA 184 Query: 91 TRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINS 132 A + ++ + +L++DI + + FHI N+ Sbjct: 185 RVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFFAEKEKTQEEFFHIFNN 244 Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 + + +++T+ +P L SR I PD + +++K + + Sbjct: 245 LFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNLN 304 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + +++A +I QR+ ++ E ++++ + +G I + LK+ Sbjct: 305 LPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353 >gi|326202772|ref|ZP_08192639.1| chromosomal replication initiator protein DnaA [Clostridium papyrosolvens DSM 2782] gi|325986849|gb|EGD47678.1| chromosomal replication initiator protein DnaA [Clostridium papyrosolvens DSM 2782] Length = 440 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 32/234 (13%), Positives = 84/234 (35%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW------- 84 + D ++ + A + P++ + L G G GK+ L + Sbjct: 104 NPKYTFDTFVIGNGNRFAHAASLAVAEAPAKAYNPLFLYGGVGLGKTHLMHAIGHFVLGQ 163 Query: 85 ----------SDKSRSTRFSNIAKSLDSIL---IDTRKPVLLEDIDLLDF---NDTQLFH 128 S+K + + I + +L++DI + + + FH Sbjct: 164 NPALKVLYVSSEKFTNELINAIRDDKNEEFRYKYRNIDVLLIDDIQFIGGKERTEEEFFH 223 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++++ + +++++ P L SR + + I+ PD + ++ K Sbjct: 224 TFNALYEANKQIIISSDRPPKEIPTLEDRLRSRFEWGLIADIAPPDLETRIAILRKKAQL 283 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + +I ++ ++ E ++++ + + +A E LK+ Sbjct: 284 ENLDVPDDVMVFIADKVGSNIRELEGALNRVIAYSTLTENIMNVDMAVEALKDM 337 >gi|189463957|ref|ZP_03012742.1| hypothetical protein BACINT_00292 [Bacteroides intestinalis DSM 17393] gi|189438530|gb|EDV07515.1| hypothetical protein BACINT_00292 [Bacteroides intestinalis DSM 17393] Length = 462 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 39/242 (16%), Positives = 86/242 (35%), Gaps = 28/242 (11%) Query: 33 PR-CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV----VILVGPSGSGKSCLANIWSDK 87 P + + + + + + + ++ P++ + G SG GK+ LAN K Sbjct: 122 PHLNPEYNFETFIEGYSNKLSRSVAEAVAQNPAKTIFNPLFFYGASGVGKTHLANAIGTK 181 Query: 88 -------SRSTRFSNIA---KSLDSILIDTRKPVL-------------LEDIDLLDFNDT 124 R S + DS+ +T + +++ + Sbjct: 182 IKELYPDKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQSIDILIIDDIQEFAGVTKTQN 241 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 FHI N +HQ L++T+ PV L +R K V ++ P + + ++ Sbjct: 242 TFFHIFNHLHQNGKQLILTSDRAPVLLQGMEERLITRFKWGMVAELERPTVELRKNILRN 301 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 + ++ YI + + S+ E +V + + I LA ++++ + Sbjct: 302 KIHRDGLQFPPEVIDYIAENVGDSVRDLEGIVISIMAHSTIYNKEIDLELAQRIVRKVVK 361 Query: 245 CD 246 + Sbjct: 362 SE 363 >gi|300742656|ref|ZP_07072677.1| DNA-directed DNA replication initiator protein [Rothia dentocariosa M567] gi|300381841|gb|EFJ78403.1| DNA-directed DNA replication initiator protein [Rothia dentocariosa M567] Length = 553 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 83/234 (35%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90 + D ++ + A + P+ + + G SG GK+ L + ++ Sbjct: 212 NPNYTFDTFVIGQSNRFAHAAAFAVSESPAQAYNPLFIYGDSGLGKTHLLHAIGHYAKHL 271 Query: 91 -----TRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDFND---TQLFH 128 R+ N + + + R +L++DI L + + FH Sbjct: 272 FPSLRVRYVNSEEFTNDFINSIRDDEGSSFKQIYRNVDMLLIDDIQFLAGKEHTQEEFFH 331 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H + +++T+ P + SR + + + P+ + ++ K Sbjct: 332 TFNALHNHQKQVVITSDLPPKQLTGFAERMRSRFEWGLITDVQPPELETRIAILRKKAQS 391 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + YI + ++ E + ++ A + +LA VLK+ Sbjct: 392 ESLNVPDDVMEYIASHITANIRELEGALIRVTAFASLNKQPVDVALAEVVLKDL 445 >gi|253698657|ref|YP_003019846.1| chromosomal replication initiation protein [Geobacter sp. M21] gi|259645251|sp|C6E7Q5|DNAA_GEOSM RecName: Full=Chromosomal replication initiator protein DnaA gi|251773507|gb|ACT16088.1| chromosomal replication initiator protein DnaA [Geobacter sp. M21] Length = 460 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 35/233 (15%), Positives = 91/233 (39%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWP---SRVVILVGPSGSGKSCLA-----NIWSD 86 + + + + + A + + P + + G G GK+ L +I + Sbjct: 126 NPKYTFESFVSGPSNQFAYAASQAVANKPATNYNPLFIYGGVGLGKTHLVNAIGNHILAK 185 Query: 87 KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 ++ ++ + +I++ + +L++DI + + + FH Sbjct: 186 NPKAKICYYSSEKFMNEMINSLRYKKMDEFRNKFRKMDLLLIDDIQFMAGKEATQEEFFH 245 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++++ +++T+ FP L SR + + I P + ++ K Sbjct: 246 TFNALYESHKQIVVTSDKFPKDIPGLEERLRSRFEWGLIADIQPPGVETKVAILKKKSDM 305 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + + +A ++ + ++ E ++ +++ A G IT S+A EV+K+ Sbjct: 306 HAVNLPDDVALFLAEGANSNIRELEGMLIRLEAFASLTGQEITLSMAREVMKD 358 >gi|197116403|ref|YP_002136830.1| chromosomal replication initiation protein [Geobacter bemidjiensis Bem] gi|226735813|sp|B5E7P6|DNAA_GEOBB RecName: Full=Chromosomal replication initiator protein DnaA gi|197085763|gb|ACH37034.1| chromosomal replication initiator protein DnaA [Geobacter bemidjiensis Bem] Length = 458 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 35/233 (15%), Positives = 91/233 (39%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWP---SRVVILVGPSGSGKSCLA-----NIWSD 86 + + + + + A + + P + + G G GK+ L +I + Sbjct: 124 NPKYTFESFVSGPSNQFAYAASQAVANKPATNYNPLFIYGGVGLGKTHLVNAIGNHILAK 183 Query: 87 KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 ++ ++ + +I++ + +L++DI + + + FH Sbjct: 184 NPKAKICYYSSEKFMNEMINSLRYKKMDEFRNKFRKMDLLLIDDIQFMAGKEATQEEFFH 243 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++++ +++T+ FP L SR + + I P + ++ K Sbjct: 244 TFNALYESHKQIVVTSDKFPKDIPGLEERLRSRFEWGLIADIQPPGVETKVAILKKKSDM 303 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + + +A ++ + ++ E ++ +++ A G IT S+A EV+K+ Sbjct: 304 HAVNLPDDVALFLAEGANSNIRELEGMLIRLEAFASLTGQEITLSMAREVMKD 356 >gi|68249578|ref|YP_248690.1| chromosomal replication initiation protein [Haemophilus influenzae 86-028NP] gi|68057777|gb|AAX88030.1| chromosomal replication initiator protein DnaA [Haemophilus influenzae 86-028NP] Length = 454 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 90/229 (39%), Gaps = 27/229 (11%) Query: 40 RDDLLVHSAIEQAVRL---IDSWPSWPS-RVVILVGPSGSGKSCLAN-----IWSDKSRS 90 D+ + + + A + + P PS L G +G GK+ L + I +DK + Sbjct: 125 FDNFVEGKSNQLARAVGQKLAQAPGEPSANPFFLYGGTGLGKTHLLHAIGNGILADKPNA 184 Query: 91 TRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINS 132 A + ++ + +L++DI + + FHI N+ Sbjct: 185 RVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFFAEKEKTQEEFFHIFNN 244 Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 + + +++T+ +P L SR I PD + +++K + + Sbjct: 245 LFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNMN 304 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + +++A +I QR+ ++ E ++++ + +G I + LK+ Sbjct: 305 LPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353 >gi|306821799|ref|ZP_07455394.1| ribosomal subunit interface protein [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550166|gb|EFM38162.1| ribosomal subunit interface protein [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 442 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 36/238 (15%), Positives = 83/238 (34%), Gaps = 31/238 (13%) Query: 36 LGISRDDLLVHSAIEQAVRLIDSWPSWP--------SRVVILVGPSGSGKSCLANIWSDK 87 + D + ++ A + P + L G G GK+ L + S++ Sbjct: 101 TKYTFDAFVTGTSNNLAYAACIAVAENPAFETPKDAYNPLFLYGGVGLGKTHLMHAISNR 160 Query: 88 -------SRSTRFSNIAKSLDSILIDTRK-------------PVLLEDIDLLD---FNDT 124 + + S+ + D I + +L++D+ Sbjct: 161 IKEKNPNYKVSYISSETFTNDFIYSLQNRKTQDFRDKYRELDAILIDDVQFFADKDTTQE 220 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 +LFH N ++ + +++++ P L SR + I PD + ++ K Sbjct: 221 ELFHTFNELYSANKQIILSSDRPPKELTTLEDRLRSRFGMGLTIDIQPPDFETRVAILEK 280 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + + I + ++ ++ E ++K+ + I+ LA EVL + Sbjct: 281 KCETDRKDVPRDVLNLIAKNIKANIRELEGALNKVCAYSNLMKRPISFELANEVLNDL 338 >gi|332288919|ref|YP_004419771.1| chromosomal replication initiation protein [Gallibacterium anatis UMN179] gi|330431815|gb|AEC16874.1| chromosomal replication initiation protein [Gallibacterium anatis UMN179] Length = 455 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 85/235 (36%), Gaps = 27/235 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWP----SWPSRVVILVGPSGSGKSCLAN-----IWS 85 + + + + A + + L G +G GK+ L + I Sbjct: 120 NPKYEFHNFVQGKSNQLARVVAQKVAEKIGDEGYNPLFLYGGTGLGKTHLLHAIGNGILK 179 Query: 86 DKSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLF 127 +K + ++ L+ K +L++DI + + F Sbjct: 180 NKPNARVVYIHSERFVQELVKALKTETIEKFKKFYRSLDALLIDDIQFFAGKEGSQEEFF 239 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H NS+ + +++T+ +P L SR V I P+ + +++K Sbjct: 240 HTFNSLFEGGRQIILTSDRYPKEIDKIEERLKSRFNWGLSVAIEPPELETRVAILLKKAE 299 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + +++A +I Q++ ++ E ++++ A G IT E LK+ Sbjct: 300 ESNIVLPEEVAFFIGQKLRTNVRELEGALNRVSANANFTGQPITIDFVRETLKDM 354 >gi|288926565|ref|ZP_06420482.1| bacterial DnaA protein helix-turn-helix domain protein [Prevotella buccae D17] gi|288336642|gb|EFC75011.1| bacterial DnaA protein helix-turn-helix domain protein [Prevotella buccae D17] Length = 469 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 33/261 (12%), Positives = 80/261 (30%), Gaps = 30/261 (11%) Query: 15 KQKNDQPKNKEEQL-FFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVIL 69 + QL ++ ++ + + + + + + + + Sbjct: 111 QANKSPTALDAAQLQALDPQLNPHLTFNNYIEGDSNKLPRSIGLSIAEHPNTTQFNPMFI 170 Query: 70 VGPSGSGKSCL---------------------ANIWSDKSRSTRFSNIAKSLDSILIDTR 108 GPSG GK+ L A ++ + S N T Sbjct: 171 YGPSGCGKTHLVNAIGLHAKQLYPQKRVLYVSARLFQVQYTSAVLQNTLNDF-IKFYQTI 229 Query: 109 KPVLLEDID---LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 ++++DI FHI N + + +++ + PV L +R Sbjct: 230 DLLIVDDIQEWMTATKTQETFFHIFNHLFKNGKRIILASDRPPVDLKGMPDRLLTRFSCG 289 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 + ++ P+ ++ + I + YI + S+ E +++ + +++ Sbjct: 290 LIAELEKPNVQLCIDILQSKIRRDGLKIPDNVVQYIAENASGSVRGLEGVINGLLAYSIT 349 Query: 226 RGMGITRSLAAEVLKETQQCD 246 I LA +K + Sbjct: 350 YNCDINLKLAERCIKRAVNIE 370 >gi|6226596|sp|P49990|DNAA_MYCAV RecName: Full=Chromosomal replication initiator protein DnaA gi|3953448|gb|AAC83390.1| DnaA [Mycobacterium avium] Length = 508 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 36/232 (15%), Positives = 90/232 (38%), Gaps = 26/232 (11%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSR---- 89 + D ++ ++ A + + P+R + + G SG GK+ L + + ++ Sbjct: 172 RYTFDTFVIGASNRFAHAAVLAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRFFP 231 Query: 90 ------------STRFSNIAKSLDSIL----IDTRKPVLLEDIDLLDFND---TQLFHII 130 + F N + + I +L++DI ++ + + FH Sbjct: 232 GMRVKYVSTEEFTNDFINSLRDDRKVPFKRTIRDVDVLLVDDIQFIEGKEGIQEEFFHTF 291 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N++H + +++++ P L +R + + + P+ + ++ K + Sbjct: 292 NTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMER 351 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + I +ER++ E + ++ A I +SLA VL++ Sbjct: 352 LAVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKSLAEIVLRDL 403 >gi|88803646|ref|ZP_01119170.1| chromosomal replication initiation protein [Polaribacter irgensii 23-P] gi|88780379|gb|EAR11560.1| chromosomal replication initiation protein [Polaribacter irgensii 23-P] Length = 475 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 41/259 (15%), Positives = 90/259 (34%), Gaps = 37/259 (14%) Query: 10 FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66 F +P QK E QL + + + + A + + P Sbjct: 125 FVIPGLQKV----KIESQL------NPNYNFANFVEGDSNRLARSAGMAVANKPGGTSFN 174 Query: 67 -VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTR 108 +++ G G GK+ L++ S+K ++ + + I Sbjct: 175 PLLIYGGVGLGKTHLSHAIGVDIKDKYPDKTVLYISSEKFTQQFIDSVKSNTRNDFIHFY 234 Query: 109 ---KPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 ++++D+ L FHI N +HQ +++T+ PV L SR Sbjct: 235 QMIDVLIIDDVQFLSGKAGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSRF 294 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 K ++ PD + ++ + + + + YI + ++ ++ E ++ M Sbjct: 295 KWGLSAELQAPDYETRISILQNKLFRDGVEMPEDIVGYIAKNIKSNVRELEGVIISMIAQ 354 Query: 223 ALSRGMGITRSLAAEVLKE 241 A + LA +++ + Sbjct: 355 ASFNRREFSLELAKQIVDK 373 >gi|330961505|gb|EGH61765.1| chromosomal replication initiation protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 512 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 39/262 (14%), Positives = 95/262 (36%), Gaps = 38/262 (14%) Query: 15 KQKNDQPKNKEEQLFFSFPRCLGISR----DDLLVHSAIEQAVRLIDSWPSWPSRV---- 66 +Q + + + Q+ + ++R ++ + + + A +W + Sbjct: 154 QQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAA--AWQVADNPKHGYN 211 Query: 67 -VILVGPSGSGKSCLANIW----------------------SDKSRSTRFSNIAKSLDSI 103 + L G G GK+ L + +D ++ + + I + Sbjct: 212 PLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKR-- 269 Query: 104 LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 + +L++DI + + FH N++ + +++T+ +P L S Sbjct: 270 FYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKS 329 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 R V + P+ + +++K ++ + A +I QR+ ++ E + ++ Sbjct: 330 RFGWGLTVAVEPPELETRVAILMKKADQAKVDLPHDAAFFIAQRIRSNVRELEGALKRVI 389 Query: 221 NLALSRGMGITRSLAAEVLKET 242 + G IT L E LK+ Sbjct: 390 AHSHFMGRDITIELIRESLKDL 411 >gi|330806658|ref|YP_004351120.1| Chromosomal replication initiator protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327374766|gb|AEA66116.1| Chromosomal replication initiator protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 508 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 36/235 (15%), Positives = 85/235 (36%), Gaps = 34/235 (14%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIW-------- 84 + ++ + + + A +W + + L G G GK+ L + Sbjct: 177 FTFENFVEGKSNQLARAA--AWQVADNPKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKN 234 Query: 85 --------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLF 127 +D ++ + + I + + +L++DI + + F Sbjct: 235 PNAKVVYLHSERFVADMVKALQLNAINEFKR--FYRSVDALLIDDIQFFARKERSQEEFF 292 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + +++T+ +P L SR V + P+ + +++K Sbjct: 293 HTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAD 352 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ + A +I QR+ ++ E + ++ + G IT L E LK+ Sbjct: 353 QAKVELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDL 407 >gi|325294208|ref|YP_004280722.1| Chromosomal replication initiator protein dnaA [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064656|gb|ADY72663.1| Chromosomal replication initiator protein dnaA [Desulfurobacterium thermolithotrophum DSM 11699] Length = 469 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 39/258 (15%), Positives = 88/258 (34%), Gaps = 38/258 (14%) Query: 23 NKEEQLFFSF------------PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---V 67 +K QL + + ++ +V + + A + P + + Sbjct: 82 HKPLQLELNLFEVKKRKENLESNLNPKYTFENFVVGANNQFAHAAAVAVAENPGKAYNPL 141 Query: 68 ILVGPSGSGKSCLANIW------SDKSRSTRFSNIAKSLDSILID--------------T 107 + G G GK+ L S++ + ++ ++ T Sbjct: 142 FIYGGVGLGKTHLMQAIGNFIKNVSPSKTVVYITTESFMNELIDALKNDKMTEFREKYRT 201 Query: 108 RKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164 +L++DI + D + FH N+++ +++T+ P + L SR + Sbjct: 202 VDVLLIDDIQFISGKDGTQIEFFHTFNALYDAGKQVVLTSDRPPKDIPMLTERLRSRFEW 261 Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 + I PD + ++ + I ++ + I ++ ++ E + K+ A Sbjct: 262 GLIADIQPPDFETRIAILRRKAEAEGIEVEDSILKLIANIIKSNIRQLEGALTKLKAKAT 321 Query: 225 SRGMGITRSLAAEVLKET 242 G I L E+ ET Sbjct: 322 LEGKPINEELVKELFSET 339 >gi|330890249|gb|EGH22910.1| chromosomal replication initiation protein [Pseudomonas syringae pv. mori str. 301020] Length = 343 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 36/235 (15%), Positives = 85/235 (36%), Gaps = 34/235 (14%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIW-------- 84 + ++ + + + A +W + + L G G GK+ L + Sbjct: 12 FTFENFVEGKSNQLARAA--AWQVADNPKHGYNPLFLYGGVGLGKTHLMHAVGNPLLKKN 69 Query: 85 --------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLF 127 +D ++ + + I + + +L++DI + + F Sbjct: 70 PNAKVVYLHSERFVADMVKALQLNAINEFKR--FYRSVDALLIDDIQFFARKERSQEEFF 127 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + +++T+ +P L SR V + P+ + +++K Sbjct: 128 HTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAD 187 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ + A +I QR+ ++ E + ++ + G IT L E LK+ Sbjct: 188 QAKVDLPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDL 242 >gi|260581928|ref|ZP_05849724.1| chromosomal replication initiator protein DnaA [Haemophilus influenzae NT127] gi|260095121|gb|EEW79013.1| chromosomal replication initiator protein DnaA [Haemophilus influenzae NT127] Length = 454 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 90/229 (39%), Gaps = 27/229 (11%) Query: 40 RDDLLVHSAIEQAVRL---IDSWPSWPS-RVVILVGPSGSGKSCLAN-----IWSDKSRS 90 D+ + + + A + + P PS L G +G GK+ L + I ++K + Sbjct: 125 FDNFVEGKSNQLARAVGQKLAQAPGEPSANPFFLYGGTGLGKTHLLHAIGNGILANKPNA 184 Query: 91 TRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINS 132 A + ++ + +L++DI + + FHI NS Sbjct: 185 RVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFFAEKEKTQEEFFHIFNS 244 Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 + + +++T+ +P L SR I PD + +++K + + Sbjct: 245 LFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNLN 304 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + +++A +I QR+ ++ E ++++ + +G I + LK+ Sbjct: 305 LPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353 >gi|319775073|ref|YP_004137561.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Haemophilus influenzae F3047] gi|317449664|emb|CBY85870.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Haemophilus influenzae F3047] Length = 454 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 90/229 (39%), Gaps = 27/229 (11%) Query: 40 RDDLLVHSAIEQAVRL---IDSWPSWPS-RVVILVGPSGSGKSCLAN-----IWSDKSRS 90 D+ + + + A + + P PS L G +G GK+ L + I +DK + Sbjct: 125 FDNFVEGKSNQLARAVGQKLAQAPGEPSANPFFLYGGTGLGKTHLLHAIGNGILADKPNA 184 Query: 91 TRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINS 132 A + ++ + +L++DI + + FHI N+ Sbjct: 185 RVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFFAEKEKTQEEFFHIFNN 244 Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 + + +++T+ +P L SR I PD + +++K + + Sbjct: 245 LFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNMN 304 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + +++A +I QR+ ++ E ++++ + +G I + LK+ Sbjct: 305 LPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353 >gi|229846051|ref|ZP_04466163.1| chromosomal replication initiation protein [Haemophilus influenzae 7P49H1] gi|229811055|gb|EEP46772.1| chromosomal replication initiation protein [Haemophilus influenzae 7P49H1] Length = 454 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 90/229 (39%), Gaps = 27/229 (11%) Query: 40 RDDLLVHSAIEQAVRL---IDSWPSWPS-RVVILVGPSGSGKSCLAN-----IWSDKSRS 90 D+ + + + A + + P PS L G +G GK+ L + I ++K + Sbjct: 125 FDNFVEGKSNQLARAVGQKLAQAPGEPSANPFFLYGGTGLGKTHLLHAIGNGILANKPNA 184 Query: 91 TRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINS 132 A + ++ + +L++DI + + FHI NS Sbjct: 185 RVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFFAEKEKTQEEFFHIFNS 244 Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 + + +++T+ +P L SR I PD + +++K + + Sbjct: 245 LFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNMN 304 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + +++A +I QR+ ++ E ++++ + +G I + LK+ Sbjct: 305 LPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353 >gi|310639472|ref|YP_003944230.1| atpase involved in DNA replication initiation-like protein [Paenibacillus polymyxa SC2] gi|309244422|gb|ADO53989.1| ATPase involved in DNA replication initiation-like protein [Paenibacillus polymyxa SC2] Length = 448 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 86/233 (36%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW------- 84 + D ++ S A + P++ + L G G GK+ L + Sbjct: 111 NPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFLYGGVGLGKTHLMHAIGHYILEH 170 Query: 85 ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128 S+K + + I + + + + L++DI + + + FH Sbjct: 171 NPTSKVVYLSSEKFTNEFINAIRDNRGESFRNKYRNIDILLIDDIQFIAGKESTQEEFFH 230 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H+ +++++ P L SR + + I PD + ++ K Sbjct: 231 TFNALHEERKQIIISSDRPPKEIPTLEERLRSRFEWGLITDIQPPDLETRIAILRKKARA 290 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I + YI +++ ++ E + ++ + ++ LAAE LK+ Sbjct: 291 ENLDIPNEAMMYIANQIDTNIRELEGALIRVVAYSSLTNQDVSSHLAAEALKD 343 >gi|77456229|ref|YP_345734.1| chromosomal replication initiation protein [Pseudomonas fluorescens Pf0-1] gi|123772395|sp|Q3KKG1|DNAA_PSEPF RecName: Full=Chromosomal replication initiator protein DnaA gi|77380232|gb|ABA71745.1| chromosomal replication initiator protein DnaA [Pseudomonas fluorescens Pf0-1] Length = 507 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 36/235 (15%), Positives = 85/235 (36%), Gaps = 34/235 (14%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIW-------- 84 + ++ + + + A +W + + L G G GK+ L + Sbjct: 176 FTFENFVEGKSNQLARAA--AWQVADNPKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKN 233 Query: 85 --------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLF 127 +D ++ + + I + + +L++DI + + F Sbjct: 234 PNAKVVYLHSERFVADMVKALQLNAINEFKR--FYRSVDALLIDDIQFFARKERSQEEFF 291 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + +++T+ +P L SR V + P+ + +++K Sbjct: 292 HTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAD 351 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ + A +I QR+ ++ E + ++ + G IT L E LK+ Sbjct: 352 QAKVELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDL 406 >gi|146280398|ref|YP_001170551.1| chromosomal replication initiation protein [Pseudomonas stutzeri A1501] gi|145568603|gb|ABP77709.1| chromosomal replication initiator protein DnaA [Pseudomonas stutzeri A1501] Length = 514 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 37/235 (15%), Positives = 85/235 (36%), Gaps = 34/235 (14%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIW-------- 84 + ++ + + + A +W + + L G G GK+ L + Sbjct: 183 FTFENFVEGKSNQLARAA--AWQVADNPKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKN 240 Query: 85 --------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLF 127 +D ++ + + I + + +L++DI + + F Sbjct: 241 PNAKVVYLHSERFVADMVKALQLNAINEFKR--FYRSVDALLIDDIQFFAKKERSQEEFF 298 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + +++T+ +P L SR V + P+ + +++K Sbjct: 299 HTFNALLEGGQQVILTSDRYPKEIDGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAD 358 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ + A +I QR+ ++ E + ++ A G IT L E LK+ Sbjct: 359 QAKVDLPHDAAFFIAQRIRSNVRELEGALKRVIAHAHFMGRDITIELIRESLKDL 413 >gi|145640667|ref|ZP_01796250.1| chromosomal replication initiation protein [Haemophilus influenzae R3021] gi|145274593|gb|EDK14456.1| chromosomal replication initiation protein [Haemophilus influenzae 22.4-21] Length = 454 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 90/229 (39%), Gaps = 27/229 (11%) Query: 40 RDDLLVHSAIEQAVRL---IDSWPSWPS-RVVILVGPSGSGKSCLAN-----IWSDKSRS 90 D+ + + + A + + P PS L G +G GK+ L + I ++K + Sbjct: 125 FDNFVEGKSNQLARAVGQKLAQAPGEPSANPFFLYGGTGLGKTHLLHAIGNGILANKPNA 184 Query: 91 TRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINS 132 A + ++ + +L++DI + + FHI NS Sbjct: 185 RVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFFAEKEKTQEEFFHIFNS 244 Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 + + +++T+ +P L SR I PD + +++K + + Sbjct: 245 LFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNLN 304 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + +++A +I QR+ ++ E ++++ + +G I + LK+ Sbjct: 305 LPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353 >gi|209966320|ref|YP_002299235.1| chromosomal replication initiation protein [Rhodospirillum centenum SW] gi|209959786|gb|ACJ00423.1| chromosomal replication initiator protein DnaA [Rhodospirillum centenum SW] Length = 507 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 38/239 (15%), Positives = 83/239 (34%), Gaps = 26/239 (10%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWS---- 85 P + ++ +V E A + + L G G GK+ L + + Sbjct: 171 PLDPRFTFENFVVGKPNELAFAAARRVADASAVTFNPLFLYGGVGLGKTHLMHAIAWHIR 230 Query: 86 --DKSRSTRFSNIAKSLDSILIDTR--------------KPVLLEDIDLLDFND---TQL 126 D SR + + K + + R ++++D+ + D + Sbjct: 231 RKDPSRRVIYLSAEKFMYQFIRALRFKDTMAFKEQFRSVDVLMIDDVQFISGKDSTQEEF 290 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH N++ + ++++A P L SRL V I + ++ + Sbjct: 291 FHTFNALVDQNRQVIISADKSPSDLEGMEERLRSRLGWGLVADIHPTTYELRLGILQQKA 350 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 I +K+ ++ ++ ++ E ++++ A G IT EVL + + Sbjct: 351 DQMGAKIPQKVLEFLAHKITSNVRELEGALNRIVAHAELVGRAITLESTQEVLHDLLRA 409 >gi|70733514|ref|YP_257153.1| chromosomal replication initiation protein [Pseudomonas fluorescens Pf-5] gi|123776101|sp|Q4KKT0|DNAA_PSEF5 RecName: Full=Chromosomal replication initiator protein DnaA gi|68347813|gb|AAY95419.1| chromosomal replication initiator protein DnaA [Pseudomonas fluorescens Pf-5] Length = 513 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 36/235 (15%), Positives = 85/235 (36%), Gaps = 34/235 (14%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIW-------- 84 + ++ + + + A +W + + L G G GK+ L + Sbjct: 182 FTFENFVEGKSNQLARAA--AWQVADNPKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKN 239 Query: 85 --------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLF 127 +D ++ + + I + + +L++DI + + F Sbjct: 240 PNAKVVYLHSERFVADMVKALQLNAINEFKR--FYRSVDALLIDDIQFFARKERSQEEFF 297 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + +++T+ +P L SR V + P+ + +++K Sbjct: 298 HTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAD 357 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ + A +I QR+ ++ E + ++ + G IT L E LK+ Sbjct: 358 QAKVELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDL 412 >gi|169335349|ref|ZP_02862542.1| hypothetical protein ANASTE_01761 [Anaerofustis stercorihominis DSM 17244] gi|169258087|gb|EDS72053.1| hypothetical protein ANASTE_01761 [Anaerofustis stercorihominis DSM 17244] Length = 456 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 37/236 (15%), Positives = 80/236 (33%), Gaps = 32/236 (13%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDK---- 87 + D +V A + P++ + + G G GK+ L + + Sbjct: 120 NPKYTFDSFVVGPNNRFAHAASLAVADAPAKKYNPLFIYGGVGLGKTHLMHAIAQHILRK 179 Query: 88 --SRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128 ++ + + L+ L +L++DI + + FH Sbjct: 180 DPTKKVVLLSSEQFLNEFLDAIQNKTNVQFRNKYRNADVLLIDDIQFIAGKNETQNEFFH 239 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++ + +++T+ P L SR + IS+PD + ++ K + Sbjct: 240 TFNALQGSNKQIILTSDKPPKEIPHLEDRLRSRFSLGLICDISMPDFETRLAILRKKAKE 299 Query: 189 RQIFIDKKLAAYIVQRME---RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + ++ YI + +E R L V ++ +T L + LK+ Sbjct: 300 ENYQVSNEILNYIAENIESNIRELEGLLLKVMALNEF---YNKPLTLDLVKKQLKD 352 >gi|295702243|ref|YP_003595318.1| chromosomal replication initiator protein DnaA [Bacillus megaterium DSM 319] gi|294799902|gb|ADF36968.1| chromosomal replication initiator protein DnaA [Bacillus megaterium DSM 319] Length = 447 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 44/266 (16%), Positives = 98/266 (36%), Gaps = 30/266 (11%) Query: 2 NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPS 61 N +E++ P K+ N + Q + + D ++ S A + Sbjct: 83 NQAEEEFDIQAPKKKVNKDDGAEFPQSMLN----SKYTFDTFVIGSGNRFAHAASLAVAE 138 Query: 62 WPSRV---VILVGPSGSGKSCLANIW------SDKSRSTRFSNIAKSLDSILIDTR---- 108 P++ + + G G GK+ L + + + + + K + + R Sbjct: 139 APAKAYNPLFIYGGVGLGKTHLMHAIGHYVLDHNPAAKVVYLSSEKFTNEFINSIRDNKA 198 Query: 109 ----------KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 +L++DI L + + FH N++H+ +++++ P Sbjct: 199 VEFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLE 258 Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215 L SR + + I+ PD + ++ K + I ++ YI +++ ++ E Sbjct: 259 DRLRSRFEWGLITDITPPDLETRIAILRKKAKADGLVIPNEVMLYIANQIDSNIRELEGA 318 Query: 216 VDKMDNLALSRGMGITRSLAAEVLKE 241 + ++ + I LAAE LK+ Sbjct: 319 LIRVVAYSSLINKDINADLAAEALKD 344 >gi|327478613|gb|AEA81923.1| chromosomal replication initiation protein [Pseudomonas stutzeri DSM 4166] Length = 486 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 37/235 (15%), Positives = 85/235 (36%), Gaps = 34/235 (14%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIW-------- 84 + ++ + + + A +W + + L G G GK+ L + Sbjct: 155 FTFENFVEGKSNQLARAA--AWQVADNPKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKN 212 Query: 85 --------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLF 127 +D ++ + + I + + +L++DI + + F Sbjct: 213 PNAKVVYLHSERFVADMVKALQLNAINEFKR--FYRSVDALLIDDIQFFAKKERSQEEFF 270 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + +++T+ +P L SR V + P+ + +++K Sbjct: 271 HTFNALLEGGQQVILTSDRYPKEIDGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAD 330 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ + A +I QR+ ++ E + ++ A G IT L E LK+ Sbjct: 331 QAKVDLPHDAAFFIAQRIRSNVRELEGALKRVIAHAHFMGRDITIELIRESLKDL 385 >gi|304309653|ref|YP_003809251.1| Chromosomal replication initiator protein [gamma proteobacterium HdN1] gi|301795386|emb|CBL43584.1| Chromosomal replication initiator protein [gamma proteobacterium HdN1] Length = 477 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 37/234 (15%), Positives = 79/234 (33%), Gaps = 30/234 (12%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW--------- 84 + ++ + + + A P + + L G G GK+ L + Sbjct: 145 ASTFNNFVEGKSNQLARAAAIQVAENPGQAYNPLFLYGGVGLGKTHLMHAVGNFMVEKKP 204 Query: 85 -------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLFH 128 +D ++ + + I + + +L++DI + + FH Sbjct: 205 NAKVVFLTSEQFVADMVKALQLNAINEFKR--FYRSVDALLIDDIQFFAGKERSQEEFFH 262 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++ + ++ T FP L SR V + P+ + ++ K Sbjct: 263 TFNALLEGGRQMIFTCDRFPKEINGVEERLKSRFGWGLTVAVEPPELETRVAILKKKAEQ 322 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 I + A ++ QR+ ++ E + ++ G IT A E LK+ Sbjct: 323 ASIELPDDAAFFVAQRVRSNVRDLEGALKRITANQQFTGKPITVEFAKESLKDL 376 >gi|330876355|gb|EGH10504.1| chromosomal replication initiation protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 395 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 39/262 (14%), Positives = 95/262 (36%), Gaps = 38/262 (14%) Query: 15 KQKNDQPKNKEEQLFFSFPRCLGISR----DDLLVHSAIEQAVRLIDSWPSWPSRV---- 66 +Q + + + Q+ + ++R ++ + + + A +W + Sbjct: 37 QQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAA--AWQVADNPKHGYN 94 Query: 67 -VILVGPSGSGKSCLANIW----------------------SDKSRSTRFSNIAKSLDSI 103 + L G G GK+ L + +D ++ + + I + Sbjct: 95 PLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKR-- 152 Query: 104 LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 + +L++DI + + FH N++ + +++T+ +P L S Sbjct: 153 FYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKS 212 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 R V + P+ + +++K ++ + A +I QR+ ++ E + ++ Sbjct: 213 RFGWGLTVAVEPPELETRVAILMKKADQAKVDLPHDAAFFIAQRIRSNVRELEGALKRVI 272 Query: 221 NLALSRGMGITRSLAAEVLKET 242 + G IT L E LK+ Sbjct: 273 AHSHFMGRDITIELIRESLKDL 294 >gi|289677549|ref|ZP_06498439.1| chromosomal replication initiation protein [Pseudomonas syringae pv. syringae FF5] Length = 383 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 39/262 (14%), Positives = 95/262 (36%), Gaps = 38/262 (14%) Query: 15 KQKNDQPKNKEEQLFFSFPRCLGISR----DDLLVHSAIEQAVRLIDSWPSWPSRV---- 66 +Q + + + Q+ + ++R ++ + + + A +W + Sbjct: 25 QQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAA--AWQVADNPKHGYN 82 Query: 67 -VILVGPSGSGKSCLANIW----------------------SDKSRSTRFSNIAKSLDSI 103 + L G G GK+ L + +D ++ + + I + Sbjct: 83 PLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKR-- 140 Query: 104 LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 + +L++DI + + FH N++ + +++T+ +P L S Sbjct: 141 FYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKS 200 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 R V + P+ + +++K ++ + A +I QR+ ++ E + ++ Sbjct: 201 RFGWGLTVAVEPPELETRVAILMKKADQAKVDLPHDAAFFIAQRIRSNVRELEGALKRVI 260 Query: 221 NLALSRGMGITRSLAAEVLKET 242 + G IT L E LK+ Sbjct: 261 AHSHFMGRDITIELIRESLKDL 282 >gi|327334557|gb|EGE76268.1| DNA-directed DNA replication initiator protein [Propionibacterium acnes HL097PA1] Length = 474 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 85/234 (36%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91 + D ++ ++ A + P + +++ G SG GK+ L + S Sbjct: 138 NPKYTFDSFVIGASNRFAHAAAVAVAEAPGKSYNPLLIYGGSGLGKTHLLHAIGRYVMSY 197 Query: 92 R--FSNIAKSLDSILIDTRKPV------------------LLEDIDLLDF---NDTQLFH 128 S + + D + L++DI L + FH Sbjct: 198 YDNVKVKYVSTEELTNDFINAIGTNRTTEFRRSYRDVDVLLVDDIQFLQSKIQTQEEFFH 257 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H ++MT+ P P L SR + + I PD + ++ + A Sbjct: 258 TFNTLHNAQKQIVMTSDRPPKLLEALEPRLRSRFEWGLLTDIQPPDLETRIAILRRKVAA 317 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +I ++ + +I R++ ++ E + ++ A + SLA VLK+ Sbjct: 318 EKITVEPDVLEFIASRIQTNIRELEGALIRVTAFASLNQQPVDISLAEVVLKDL 371 >gi|325275332|ref|ZP_08141283.1| chromosomal replication initiation protein [Pseudomonas sp. TJI-51] gi|324099523|gb|EGB97418.1| chromosomal replication initiation protein [Pseudomonas sp. TJI-51] Length = 340 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 37/235 (15%), Positives = 84/235 (35%), Gaps = 34/235 (14%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIW-------- 84 + D + + + A +W + + L G G GK+ L + Sbjct: 9 FTFDTFVEGKSNQLARAA--AWQVADNPKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKN 66 Query: 85 --------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLF 127 +D ++ + + I + + +L++DI + + F Sbjct: 67 PNAKVVYLHSERFVADMVKALQLNAINEFKR--FYRSVDALLIDDIQFFARKERSQEEFF 124 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + +++T+ +P L SR V + P+ + +++K Sbjct: 125 HTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAD 184 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ + A +I QR+ ++ E + ++ + G IT L E LK+ Sbjct: 185 QAKVELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDL 239 >gi|223935395|ref|ZP_03627312.1| chromosomal replication initiator protein DnaA [bacterium Ellin514] gi|223895805|gb|EEF62249.1| chromosomal replication initiator protein DnaA [bacterium Ellin514] Length = 462 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 45/266 (16%), Positives = 93/266 (34%), Gaps = 37/266 (13%) Query: 12 VPDKQK---NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-- 66 +P+K K P+ + F+ + + +V A + P + Sbjct: 105 IPEKVKVVEATAPERSSGEAAFN----PKNTFETFVVGGNNNFAHAAAQAVAQAPGKSYN 160 Query: 67 -VILVGPSGSGKSCLANIW-----SDKSRSTRFSNIAKSLDSILIDT------------- 107 + L G G GK+ L + S K + ++ + ID Sbjct: 161 PLFLYGGVGLGKTHLLHAIGHHVLSHKKGARVAYVSSEKFTNEYIDAIQNNQIAKFRKKY 220 Query: 108 --RKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 +L++DI L + + FH N++H+ +++T L SR Sbjct: 221 RQTDVLLIDDIQFLAGKERIQEEFFHTFNALHEAHKQIVLTCDRPASEIQNLEHRLVSRF 280 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 + V + PD + ++ K A + + + + ++ R+ ++ E + ++ + Sbjct: 281 EWGLVTDLQPPDIETRMAILRKKAASMGVELPEDILNFLANRIRANIRRLEGALIRVASY 340 Query: 223 ALSRGMGITRS----LAAEVLKETQQ 244 A G +T L EVL E + Sbjct: 341 ASLTGKKLTIEVVEGLLREVLHEEGR 366 >gi|225181147|ref|ZP_03734593.1| chromosomal replication initiator protein DnaA [Dethiobacter alkaliphilus AHT 1] gi|225168116|gb|EEG76921.1| chromosomal replication initiator protein DnaA [Dethiobacter alkaliphilus AHT 1] Length = 454 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 43/264 (16%), Positives = 93/264 (35%), Gaps = 27/264 (10%) Query: 4 MKEDYSFFVPDKQKNDQPKNKEEQLFFSFP-RCLGISRDDLLVHSAIEQAVRL---IDSW 59 + ED +F +++ + E+ S + D ++ ++ A + Sbjct: 84 INEDETFDTSGEKETAPRLKQVEEPKLSSSWLNPKYTFDTFVIGNSNRFAHAASLAVSEA 143 Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL--------------DSILI 105 P+ + + G G GK+ L + S + D+ + Sbjct: 144 PARAYNPLFIYGGVGLGKTHLMHAIGHHVLENIPSYRVLYISSEKFTNEFINSIRDNKTV 203 Query: 106 DTRK------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156 D R +L++DI L + + FH N++H+ + +++++ P Sbjct: 204 DFRNKYRNIDVLLIDDIQFLAGKEQTQEEFFHTFNALHENNKQIIISSDRPPKEIPTLED 263 Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216 L SR + + I PD + ++ K +I + + YI + ++ E Sbjct: 264 RLRSRFEWGLITDIQSPDLETRIAILRKKAHSEKITVANDVMLYIANNIVTNIRELEGAF 323 Query: 217 DKMDNLALSRGMGITRSLAAEVLK 240 ++ + I SLA E L+ Sbjct: 324 IRVIAYSSLTNRNIDVSLAEEALQ 347 >gi|240172091|ref|ZP_04750750.1| chromosomal replication initiation protein [Mycobacterium kansasii ATCC 12478] Length = 514 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 35/233 (15%), Positives = 86/233 (36%), Gaps = 28/233 (12%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRF 93 + D ++ ++ A + P+R + + G SG GK+ L + + F Sbjct: 178 RYTFDTFVIGASNRFAHAATLAIAEAPARAYNPLFIWGESGLGKTHLLHA-AGNYTQRLF 236 Query: 94 SNI---AKSLDSILIDTRKP------------------VLLEDIDLLDFND---TQLFHI 129 + S + D +L++DI ++ + + FH Sbjct: 237 PGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHT 296 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N++H + +++++ P L +R + + + P+ + ++ K Sbjct: 297 FNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQME 356 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ + + I +ER++ E + ++ A I ++LA VL++ Sbjct: 357 RLAVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDL 409 >gi|149182290|ref|ZP_01860769.1| chromosomal replication initiation protein [Bacillus sp. SG-1] gi|148849982|gb|EDL64153.1| chromosomal replication initiation protein [Bacillus sp. SG-1] Length = 448 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 47/262 (17%), Positives = 94/262 (35%), Gaps = 29/262 (11%) Query: 6 EDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSR 65 E++ VP K+ D +E Q D ++ S A + P++ Sbjct: 87 EEFDIPVPPKKVVDNDDGQEFQQNM---LNPKYMFDTFVIGSGNRFAHAASLAVAEAPAK 143 Query: 66 V---VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL--------------DSILIDTR 108 + + G G GK+ L + + L D+ +D R Sbjct: 144 AYNPLFIYGGVGLGKTHLMHAIGHYVLEHNPAAKVVYLSSEKFTNEFINSIRDNKAVDFR 203 Query: 109 K------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC 159 +L++DI L + + FH N++H+ +++++ P L Sbjct: 204 NKYRNVDVLLIDDIQFLAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLR 263 Query: 160 SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 SR + + I+ PD + ++ K + I + YI +++ ++ E + ++ Sbjct: 264 SRFEWGLITDITPPDLETRIAILRKKAKAEGLDIPNEAMLYIANQIDSNIRELEGALIRV 323 Query: 220 DNLALSRGMGITRSLAAEVLKE 241 + I LAAE LK+ Sbjct: 324 VAYSSLINKDINADLAAEALKD 345 >gi|317503721|ref|ZP_07961737.1| DNA-directed DNA replication initiator protein [Prevotella salivae DSM 15606] gi|315665164|gb|EFV04815.1| DNA-directed DNA replication initiator protein [Prevotella salivae DSM 15606] Length = 468 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 41/262 (15%), Positives = 89/262 (33%), Gaps = 35/262 (13%) Query: 13 PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPS-RVVI 68 P + + Q + + QL ++ + + ++ + A L I P+ P + Sbjct: 115 PSSKDDTQVADIDTQL------DPHLNFKNYVEGTSNKLARSLGLSIAEHPAQPQFNPMF 168 Query: 69 LVGPSGSGKSCL---------------------ANIWSDKSRSTRFSNIAKSLDSILIDT 107 + GPSG GK+ L A ++ + F T Sbjct: 169 IYGPSGCGKTHLINAIGLRCKQLYPEKRVLYISARLFQTQFVDANFHGSINDF-IRFYQT 227 Query: 108 RKPVLLEDIDL---LDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164 ++++DI FHI N + + +L+ + PV L +R Sbjct: 228 IDMLIVDDIQEWVNATKTQDTFFHIFNHLFRNGKRMLLASDRPPVDLKGMNERLLTRFSC 287 Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 + ++ P+ + ++ + I ++ +I S+ E +++ + ++ Sbjct: 288 GLIAELEKPNVELCTDILKSKIRRDGLHIPDEVIQFIASTANGSVRDLEGVINSLLAYSV 347 Query: 225 SRGMGITRSLAAEVLKETQQCD 246 I LA V+K + D Sbjct: 348 VYNSDIDMRLAERVIKRAVKID 369 >gi|145638185|ref|ZP_01793795.1| chromosomal replication initiation protein [Haemophilus influenzae PittII] gi|145272514|gb|EDK12421.1| chromosomal replication initiation protein [Haemophilus influenzae PittII] Length = 454 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 90/229 (39%), Gaps = 27/229 (11%) Query: 40 RDDLLVHSAIEQAVRL---IDSWPSWPS-RVVILVGPSGSGKSCLAN-----IWSDKSRS 90 D+ + + + A + + P PS L G +G GK+ L + I ++K + Sbjct: 125 FDNFVEGKSNQLARAVGQKLAQAPGEPSANPFFLYGGTGLGKTHLLHAIGNGILANKPNA 184 Query: 91 TRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINS 132 A + ++ + +L++DI + + FHI N+ Sbjct: 185 RVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFFAEKEKTQEEFFHIFNN 244 Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 + + +++T+ +P L SR I PD + +++K + + Sbjct: 245 LFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNLN 304 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + +++A +I QR+ ++ E ++++ + +G I + LK+ Sbjct: 305 LPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353 >gi|229843947|ref|ZP_04464088.1| chromosomal replication initiation protein [Haemophilus influenzae 6P18H1] gi|229812941|gb|EEP48629.1| chromosomal replication initiation protein [Haemophilus influenzae 6P18H1] Length = 454 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 90/229 (39%), Gaps = 27/229 (11%) Query: 40 RDDLLVHSAIEQAVRL---IDSWPSWPS-RVVILVGPSGSGKSCLAN-----IWSDKSRS 90 D+ + + + A + + P PS L G +G GK+ L + I ++K + Sbjct: 125 FDNFVEGKSNQLARAVGQKLAQAPGEPSANPFFLYGGTGLGKTHLLHAIGNGILANKPNA 184 Query: 91 TRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINS 132 A + ++ + +L++DI + + FHI N+ Sbjct: 185 RVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFFAEKEKTQEEFFHIFNN 244 Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 + + +++T+ +P L SR I PD + +++K + + Sbjct: 245 LFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNLN 304 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + +++A +I QR+ ++ E ++++ + +G I + LK+ Sbjct: 305 LPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDIDFVRDTLKD 353 >gi|313815417|gb|EFS53131.1| replication initiator protein DnaA [Propionibacterium acnes HL059PA1] gi|314916213|gb|EFS80044.1| replication initiator protein DnaA [Propionibacterium acnes HL005PA4] gi|314921816|gb|EFS85647.1| replication initiator protein DnaA [Propionibacterium acnes HL050PA3] gi|314955285|gb|EFS99690.1| replication initiator protein DnaA [Propionibacterium acnes HL027PA1] gi|314959158|gb|EFT03260.1| replication initiator protein DnaA [Propionibacterium acnes HL002PA1] gi|315102317|gb|EFT74293.1| replication initiator protein DnaA [Propionibacterium acnes HL046PA1] gi|327454252|gb|EGF00907.1| replication initiator protein DnaA [Propionibacterium acnes HL087PA3] gi|327456312|gb|EGF02967.1| replication initiator protein DnaA [Propionibacterium acnes HL083PA2] gi|328756010|gb|EGF69626.1| replication initiator protein DnaA [Propionibacterium acnes HL087PA1] gi|328758853|gb|EGF72469.1| replication initiator protein DnaA [Propionibacterium acnes HL025PA2] Length = 474 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 85/234 (36%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91 + D ++ ++ A + P + +++ G SG GK+ L + S Sbjct: 138 NPKYTFDSFVIGASNRFAHAAAVAVAEAPGKSYNPLLIYGGSGLGKTHLLHAIGRYVMSY 197 Query: 92 R--FSNIAKSLDSILIDTRKPV------------------LLEDIDLLDF---NDTQLFH 128 S + + D + L++DI L + FH Sbjct: 198 YDNVKVKYVSTEELTNDFINAIGTNRTTEFRRSYRDVDVLLVDDIQFLQSKIQTQEEFFH 257 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H ++MT+ P P L SR + + I PD + ++ + A Sbjct: 258 TFNTLHNAQKQIVMTSDRPPKLLEALEPRLRSRFEWGLLTDIQPPDLETRIAILRRKVAA 317 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +I ++ + +I R++ ++ E + ++ A + SLA VLK+ Sbjct: 318 EKITVEPDVLEFIASRIQTNIRELEGALIRVTAFASLNQQPVDISLAEVVLKDL 371 >gi|313806856|gb|EFS45354.1| replication initiator protein DnaA [Propionibacterium acnes HL087PA2] gi|313811769|gb|EFS49483.1| replication initiator protein DnaA [Propionibacterium acnes HL083PA1] gi|313824524|gb|EFS62238.1| replication initiator protein DnaA [Propionibacterium acnes HL036PA2] gi|313826193|gb|EFS63907.1| replication initiator protein DnaA [Propionibacterium acnes HL063PA1] gi|313829189|gb|EFS66903.1| replication initiator protein DnaA [Propionibacterium acnes HL063PA2] gi|313832303|gb|EFS70017.1| replication initiator protein DnaA [Propionibacterium acnes HL007PA1] gi|313832763|gb|EFS70477.1| replication initiator protein DnaA [Propionibacterium acnes HL056PA1] gi|313839622|gb|EFS77336.1| replication initiator protein DnaA [Propionibacterium acnes HL086PA1] gi|314975198|gb|EFT19293.1| replication initiator protein DnaA [Propionibacterium acnes HL053PA1] gi|314977611|gb|EFT21706.1| replication initiator protein DnaA [Propionibacterium acnes HL045PA1] gi|314990686|gb|EFT34777.1| replication initiator protein DnaA [Propionibacterium acnes HL005PA3] gi|315078993|gb|EFT51005.1| replication initiator protein DnaA [Propionibacterium acnes HL053PA2] gi|315088015|gb|EFT59991.1| replication initiator protein DnaA [Propionibacterium acnes HL072PA1] gi|327332500|gb|EGE74235.1| DNA-directed DNA replication initiator protein [Propionibacterium acnes HL096PA2] gi|327333673|gb|EGE75390.1| DNA-directed DNA replication initiator protein [Propionibacterium acnes HL096PA3] gi|327448835|gb|EGE95489.1| replication initiator protein DnaA [Propionibacterium acnes HL043PA1] gi|328759811|gb|EGF73402.1| DNA-directed DNA replication initiator protein [Propionibacterium acnes HL099PA1] Length = 474 Score = 112 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 85/234 (36%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91 + D ++ ++ A + P + +++ G SG GK+ L + S Sbjct: 138 NPKYTFDSFVIGASNRFAHAAAVAVAEAPGKSYNPLLIYGGSGLGKTHLLHAIGRYVMSY 197 Query: 92 R--FSNIAKSLDSILIDTRKPV------------------LLEDIDLLDF---NDTQLFH 128 S + + D + L++DI L + FH Sbjct: 198 YDNVKVKYVSTEELTNDFINAIGTNRTTEFRRSYRDVDVLLVDDIQFLQSKIQTQEEFFH 257 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H ++MT+ P P L SR + + I PD + ++ + A Sbjct: 258 TFNTLHNAQKQIVMTSDRPPKLLEALEPRLRSRFEWGLLTDIQPPDLETRIAILRRKVAA 317 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +I ++ + +I R++ ++ E + ++ A + SLA VLK+ Sbjct: 318 EKITVEPDVLEFIASRIQTNIRELEGALIRVTAFASLNQQPVDISLAEVVLKDL 371 >gi|149278936|ref|ZP_01885070.1| chromosomal replication initiator protein [Pedobacter sp. BAL39] gi|149230215|gb|EDM35600.1| chromosomal replication initiator protein [Pedobacter sp. BAL39] Length = 490 Score = 112 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 32/231 (13%), Positives = 80/231 (34%), Gaps = 27/231 (11%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPSRV----VILVGPSGSGKSCLANIW--------- 84 + ++ + A + + P +++ G G GK+ LA Sbjct: 157 YTFENYIEGDCNRLARSAGYAVAAKPGGTSFNPLMIYGGVGLGKTHLAQAIGNEIKRNMP 216 Query: 85 --------SDKSRSTRFSNIAKSLDSILIDTRKP---VLLEDIDLLDFNDTQ---LFHII 130 +K ++ + + ++ + ++++D+ + FHI Sbjct: 217 DKLVIYVSCEKFCQQFVDSLKNNTINDFVNFYQAMDVIIMDDVHNFSGKEKTQDIFFHIF 276 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N +HQ +++++ P L SR K + +PD + ++ K Sbjct: 277 NHLHQSGKQIILSSDKSPKDLVGLEERLLSRFKWGLSADLQVPDLETRIAILKKKMYADG 336 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 I + ++ Y+ ++ ++ E + + + I LA ++LK Sbjct: 337 IELPAEVVEYVAHNIDNNVRELEGAMVSLLAQSTLNKKDIDLDLAKQMLKN 387 >gi|66043272|ref|YP_233113.1| chromosomal replication initiation protein [Pseudomonas syringae pv. syringae B728a] gi|81308685|sp|Q500U7|DNAA_PSEU2 RecName: Full=Chromosomal replication initiator protein DnaA gi|63253979|gb|AAY35075.1| chromosomal replication initiator protein, DnaA [Pseudomonas syringae pv. syringae B728a] gi|330970325|gb|EGH70391.1| chromosomal replication initiation protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 511 Score = 112 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 39/262 (14%), Positives = 95/262 (36%), Gaps = 38/262 (14%) Query: 15 KQKNDQPKNKEEQLFFSFPRCLGISR----DDLLVHSAIEQAVRLIDSWPSWPSRV---- 66 +Q + + + Q+ + ++R ++ + + + A +W + Sbjct: 153 QQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAA--AWQVADNPKHGYN 210 Query: 67 -VILVGPSGSGKSCLANIW----------------------SDKSRSTRFSNIAKSLDSI 103 + L G G GK+ L + +D ++ + + I + Sbjct: 211 PLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKR-- 268 Query: 104 LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 + +L++DI + + FH N++ + +++T+ +P L S Sbjct: 269 FYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKS 328 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 R V + P+ + +++K ++ + A +I QR+ ++ E + ++ Sbjct: 329 RFGWGLTVAVEPPELETRVAILMKKADQAKVDLPHDAAFFIAQRIRSNVRELEGALKRVI 388 Query: 221 NLALSRGMGITRSLAAEVLKET 242 + G IT L E LK+ Sbjct: 389 AHSHFMGRDITIELIRESLKDL 410 >gi|330976402|gb|EGH76459.1| chromosomal replication initiation protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 511 Score = 112 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 39/262 (14%), Positives = 95/262 (36%), Gaps = 38/262 (14%) Query: 15 KQKNDQPKNKEEQLFFSFPRCLGISR----DDLLVHSAIEQAVRLIDSWPSWPSRV---- 66 +Q + + + Q+ + ++R ++ + + + A +W + Sbjct: 153 QQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAA--AWQVADNPKHGYN 210 Query: 67 -VILVGPSGSGKSCLANIW----------------------SDKSRSTRFSNIAKSLDSI 103 + L G G GK+ L + +D ++ + + I + Sbjct: 211 PLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKR-- 268 Query: 104 LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 + +L++DI + + FH N++ + +++T+ +P L S Sbjct: 269 FYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKS 328 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 R V + P+ + +++K ++ + A +I QR+ ++ E + ++ Sbjct: 329 RFGWGLTVAVEPPELETRVAILMKKADQAKVDLPHDAAFFIAQRIRSNVRELEGALKRVI 388 Query: 221 NLALSRGMGITRSLAAEVLKET 242 + G IT L E LK+ Sbjct: 389 AHSHFMGRDITIELIRESLKDL 410 >gi|330937300|gb|EGH41308.1| chromosomal replication initiation protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 511 Score = 112 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 39/262 (14%), Positives = 95/262 (36%), Gaps = 38/262 (14%) Query: 15 KQKNDQPKNKEEQLFFSFPRCLGISR----DDLLVHSAIEQAVRLIDSWPSWPSRV---- 66 +Q + + + Q+ + ++R ++ + + + A +W + Sbjct: 153 QQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAA--AWQVADNPKHGYN 210 Query: 67 -VILVGPSGSGKSCLANIW----------------------SDKSRSTRFSNIAKSLDSI 103 + L G G GK+ L + +D ++ + + I + Sbjct: 211 PLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKR-- 268 Query: 104 LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 + +L++DI + + FH N++ + +++T+ +P L S Sbjct: 269 FYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKS 328 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 R V + P+ + +++K ++ + A +I QR+ ++ E + ++ Sbjct: 329 RFGWGLTVAVEPPELETRVAILMKKADQAKVDLPHDAAFFIAQRIRSNVRELEGALKRVI 388 Query: 221 NLALSRGMGITRSLAAEVLKET 242 + G IT L E LK+ Sbjct: 389 AHSHFMGRDITIELIRESLKDL 410 >gi|254515869|ref|ZP_05127929.1| chromosomal replication initiator protein DnaA [gamma proteobacterium NOR5-3] gi|219675591|gb|EED31957.1| chromosomal replication initiator protein DnaA [gamma proteobacterium NOR5-3] Length = 483 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 82/233 (35%), Gaps = 30/233 (12%) Query: 38 ISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW---------- 84 + + + + + A+ + P + L G G GK+ L + Sbjct: 152 YTFSNFVEGKSNQLALAAANQVSENPGGAYNPLFLYGGVGLGKTHLMHAVGNALKINKPN 211 Query: 85 ------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID---LLDFNDTQLFHI 129 +D ++ + + IA + +L++DI D + + FH Sbjct: 212 ARIVYLHSERFVADMVKALQLNAIADFKR--YYRSVDALLIDDIQFFAKKDRSQEEFFHT 269 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N++ + +++T +P L SR V + PD + +++ + Sbjct: 270 FNALLEGGQQMILTCDRYPKEIDGLEERLKSRFGWGLTVAVEPPDLETRVAILMNKASQA 329 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ + A +I QR+ ++ E + ++ A I L E LK+ Sbjct: 330 RLDLPPDAAFFIAQRIRSNVRELEGALKRVIASANFTRRPIDVDLVKESLKDL 382 >gi|330964181|gb|EGH64441.1| chromosomal replication initiation protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 511 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 39/262 (14%), Positives = 95/262 (36%), Gaps = 38/262 (14%) Query: 15 KQKNDQPKNKEEQLFFSFPRCLGISR----DDLLVHSAIEQAVRLIDSWPSWPSRV---- 66 +Q + + + Q+ + ++R ++ + + + A +W + Sbjct: 153 QQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAA--AWQVADNPKHGYN 210 Query: 67 -VILVGPSGSGKSCLANIW----------------------SDKSRSTRFSNIAKSLDSI 103 + L G G GK+ L + +D ++ + + I + Sbjct: 211 PLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKR-- 268 Query: 104 LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 + +L++DI + + FH N++ + +++T+ +P L S Sbjct: 269 FYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKS 328 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 R V + P+ + +++K ++ + A +I QR+ ++ E + ++ Sbjct: 329 RFGWGLTVAVEPPELETRVAILMKKADQAKVDLPHDAAFFIAQRIRSNVRELEGALKRVI 388 Query: 221 NLALSRGMGITRSLAAEVLKET 242 + G IT L E LK+ Sbjct: 389 AHSHFMGRDITIELIRESLKDL 410 >gi|331017725|gb|EGH97781.1| chromosomal replication initiation protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 395 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 39/262 (14%), Positives = 95/262 (36%), Gaps = 38/262 (14%) Query: 15 KQKNDQPKNKEEQLFFSFPRCLGISR----DDLLVHSAIEQAVRLIDSWPSWPSRV---- 66 +Q + + + Q+ + ++R ++ + + + A +W + Sbjct: 37 QQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAA--AWQVADNPKHGYN 94 Query: 67 -VILVGPSGSGKSCLANIW----------------------SDKSRSTRFSNIAKSLDSI 103 + L G G GK+ L + +D ++ + + I + Sbjct: 95 PLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKR-- 152 Query: 104 LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 + +L++DI + + FH N++ + +++T+ +P L S Sbjct: 153 FYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKS 212 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 R V + P+ + +++K ++ + A +I QR+ ++ E + ++ Sbjct: 213 RFGWGLTVAVEPPELETRVAILMKKADQAKVDLPHDAAFFIAQRIRSNVRELEGALKRVI 272 Query: 221 NLALSRGMGITRSLAAEVLKET 242 + G IT L E LK+ Sbjct: 273 AHSHFMGRDITIELIRESLKDL 294 >gi|163814987|ref|ZP_02206374.1| hypothetical protein COPEUT_01140 [Coprococcus eutactus ATCC 27759] gi|158449670|gb|EDP26665.1| hypothetical protein COPEUT_01140 [Coprococcus eutactus ATCC 27759] Length = 454 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 39/240 (16%), Positives = 84/240 (35%), Gaps = 28/240 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLANIWSD---- 86 + ++ +V + + A + P + L G SG GK+ L + Sbjct: 115 RPDYTFENFIVGESNKHAHATCLAVADSPGQDKFNPLFLYGESGLGKTHLMQSIAHYILQ 174 Query: 87 -------------KSRSTRFSNIAKSLDSILIDTRK---PVLLEDIDLL---DFNDTQLF 127 + + IAK + + +L++DI L D + F Sbjct: 175 HNSNMKVLYVSSNQFTNEIIEAIAKKTTEEFRNKYRKVDVLLIDDIQYLIGKDATQNEFF 234 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 N++H +++++ P SR + + I PD + ++ Sbjct: 235 DTFNALHDEGKQIILSSDKPPKEIKTLDVRYRSRFEWGVPIDIHAPDYETRMAILKNKAE 294 Query: 188 DRQIF-IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + + I + + YI + + ++ E ++K+ + + IT LA +LK+ D Sbjct: 295 IKGLKNISEPIFEYIAKNITYNVRELEGALNKLSIYSELGHIKITEDLAKNILKDLISKD 354 >gi|315441697|ref|YP_004074576.1| chromosomal replication initiator protein DnaA [Mycobacterium sp. Spyr1] gi|315260000|gb|ADT96741.1| chromosomal replication initiator protein DnaA [Mycobacterium sp. Spyr1] Length = 492 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 89/233 (38%), Gaps = 28/233 (12%) Query: 37 GISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRF 93 + + ++ ++ A I P+ + + G SG GK+ L + + F Sbjct: 156 RYTFETFVIGASNRFAHAASLAIAEAPARAYNPLFIWGESGLGKTHLLHA-AGNYAQRLF 214 Query: 94 SNI-----------AKSLDSILIDTRKP----------VLLEDIDLLDFND---TQLFHI 129 + ++S+ D R +L++DI ++ D + FH Sbjct: 215 PGMRVKYVSTEEFTNDFINSLRDDRRASFKRTYRDIDVLLVDDIQFIEGKDGIQEEFFHT 274 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N++H + +++++ P L +R + + + P+ + ++ K Sbjct: 275 FNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMD 334 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ + + I R+ER++ E + ++ A I +SLA VL++ Sbjct: 335 RLDVPDDVLELIASRIERNIRELEGALIRVTAFASLNKTSIDKSLAEIVLRDL 387 >gi|157414323|ref|YP_001481579.1| chromosomal replication initiation protein [Campylobacter jejuni subsp. jejuni 81116] gi|172046981|sp|A8FJG5|DNAA_CAMJ8 RecName: Full=Chromosomal replication initiator protein DnaA gi|157385287|gb|ABV51602.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni 81116] Length = 440 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 80/233 (34%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDS-WPSWPSRVVI----LVGPSGSGKSCLANIWSDKSR 89 + + +V + + A + + + GP+G GK+ L + S Sbjct: 102 NPSFTFESFVVGDSNKYAYGACKAISQKDKLGKLYNPIFIYGPTGLGKTHLLQAVGNASL 161 Query: 90 STRFSNIAKSLDSILIDTRK------------------PVLLEDIDLLDFND---TQLFH 128 I + ++ + D +L++D+ L D + F Sbjct: 162 EMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEEFFF 221 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 I N I D ++MT+ P L SR + I+ P D +I K Sbjct: 222 IFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIRKKCEF 281 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 I + + YI + ++ E ++ ++ A G IT LA V+K+ Sbjct: 282 NDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKSVMKD 334 >gi|145592567|ref|YP_001156864.1| chromosomal replication initiator protein DnaA [Salinispora tropica CNB-440] gi|145301904|gb|ABP52486.1| chromosomal replication initiator protein DnaA [Salinispora tropica CNB-440] Length = 587 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 88/233 (37%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSD----- 86 + ++ S+ A + P+ + + G SG GK+ L + Sbjct: 250 NPKYMFETFVIGSSNRFAHAASVAVAESPAKAYNPLFIYGSSGLGKTHLLHAIGHYATTL 309 Query: 87 -KSRSTRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDFND---TQLFH 128 + S R+ + + + + R +L++DI L+ + + FH Sbjct: 310 GNANSVRYVSTEEFTNDFINSLRDDKTSAFQRRYRDVDILLIDDIQFLENRERTQEEFFH 369 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H + +++T+ P L +R + + I PD + ++ K A Sbjct: 370 TFNTLHNANKQIVITSDRSPKQLATLEDRLRTRFEWGLLADIQPPDLETRIAILQKKAAQ 429 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++F + +I R+ S+ E + ++ A + SLA EVL++ Sbjct: 430 ERLFAPPDVLEFIASRVSNSIRELEGALIRVTAFASLTRSSVELSLAEEVLRD 482 >gi|108802857|ref|YP_642794.1| chromosomal replication initiator protein DnaA [Rubrobacter xylanophilus DSM 9941] gi|108764100|gb|ABG02982.1| chromosomal replication initiator protein DnaA [Rubrobacter xylanophilus DSM 9941] Length = 450 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 40/256 (15%), Positives = 90/256 (35%), Gaps = 28/256 (10%) Query: 14 DKQKNDQPKNKEEQLFFSFPR--CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVI 68 +++ E L PR + D ++ + A + P + Sbjct: 90 GREETSAETGAESVLSARTPRSLKAKYTFDSFVIGAGNRFAHAAALAVAENPGVVYNPLF 149 Query: 69 LVGPSGSGKSCLANIW------SDKSRSTRFSNIAKSLDSILID--------------TR 108 + G G GK+ L D + R+ + + + Sbjct: 150 IYGGVGLGKTHLLRAVGHYVEDQDPTMRVRYVTCEQFTNDFINSMRDNAPLEFQKRYREN 209 Query: 109 KPVLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 +L++DI + FH N++++ + +++ + P L SR + Sbjct: 210 DVLLIDDIQFLENKVETQEAFFHTFNALYEENKQIVIASDRHPKYLQTLENRLVSRFEWG 269 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 V I PD + ++ K ++ +D ++ +I ++ ++ E + ++ A Sbjct: 270 LVTDIQPPDLETRIAILRKKAMMDRLEVDDEVLTFIASKVSTNIRELEGALVRILAYASL 329 Query: 226 RGMGITRSLAAEVLKE 241 G +T +LA EVL++ Sbjct: 330 YGRQVTVALAEEVLRD 345 >gi|330952332|gb|EGH52592.1| chromosomal replication initiation protein [Pseudomonas syringae Cit 7] Length = 388 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 39/262 (14%), Positives = 95/262 (36%), Gaps = 38/262 (14%) Query: 15 KQKNDQPKNKEEQLFFSFPRCLGISR----DDLLVHSAIEQAVRLIDSWPSWPSRV---- 66 +Q + + + Q+ + ++R ++ + + + A +W + Sbjct: 30 QQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAA--AWQVADNPKHGYN 87 Query: 67 -VILVGPSGSGKSCLANIW----------------------SDKSRSTRFSNIAKSLDSI 103 + L G G GK+ L + +D ++ + + I + Sbjct: 88 PLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKR-- 145 Query: 104 LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 + +L++DI + + FH N++ + +++T+ +P L S Sbjct: 146 FYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKS 205 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 R V + P+ + +++K ++ + A +I QR+ ++ E + ++ Sbjct: 206 RFGWGLTVAVEPPELETRVAILMKKADQAKVDLPHDAAFFIAQRIRSNVRELEGALKRVI 265 Query: 221 NLALSRGMGITRSLAAEVLKET 242 + G IT L E LK+ Sbjct: 266 AHSHFMGRDITIELIRESLKDL 287 >gi|145221421|ref|YP_001132099.1| chromosomal replication initiation protein [Mycobacterium gilvum PYR-GCK] gi|145213907|gb|ABP43311.1| chromosomal replication initiator protein DnaA [Mycobacterium gilvum PYR-GCK] Length = 492 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 37/232 (15%), Positives = 88/232 (37%), Gaps = 26/232 (11%) Query: 37 GISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS--- 90 + + ++ ++ A I P+ + + G SG GK+ L + + ++ Sbjct: 156 RYTFETFVIGASNRFAHAASLAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFP 215 Query: 91 ------TRFSNIAKSLDSILIDTRKP-----------VLLEDIDLLDFND---TQLFHII 130 + L D R+ +L++DI ++ D + FH Sbjct: 216 GMRVKYVSTEEFTNDFINSLRDDRRASFKRTYRDIDVLLVDDIQFIEGKDGIQEEFFHTF 275 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N++H + +++++ P L +R + + + P+ + ++ K + Sbjct: 276 NTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMDR 335 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + I R+ER++ E + ++ A I +SLA VL++ Sbjct: 336 LDVPDDVLELIASRIERNIRELEGALIRVTAFASLNKTSIDKSLAEIVLRDL 387 >gi|319893740|ref|YP_004150615.1| Chromosomal replication initiator protein DnaA [Staphylococcus pseudintermedius HKU10-03] gi|317163436|gb|ADV06979.1| Chromosomal replication initiator protein DnaA [Staphylococcus pseudintermedius HKU10-03] Length = 447 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 39/231 (16%), Positives = 87/231 (37%), Gaps = 26/231 (11%) Query: 40 RDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW------------ 84 + ++ A + P+ + + G G GK+ L + Sbjct: 117 FETFVIGPGNRFPHAASLAVAESPANAYNPLFIYGGVGLGKTHLMHAIGHYVLENNPDAK 176 Query: 85 -----SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFHIINSI 133 S+K + +I + + + + L++DI + + + FH N + Sbjct: 177 VLYTSSEKFTNEFIQSIRNNDTESFREKYRNIDILLIDDIQFIQKKEQTQEEFFHTFNDL 236 Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193 HQ +++++ P L SR + +V I+ PD + ++ K + + I Sbjct: 237 HQNKKQIVISSDRPPKEISTLEERLKSRFQWGLIVDITPPDFETRMAILQKKTEEENLDI 296 Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 + YI +++ ++ E + ++ + +G IT L A+ LK+ Q Sbjct: 297 PIESLTYIANQIQTNIRELEGALTRVLAYSKLQGKPITTELTADALKDIIQ 347 >gi|314965762|gb|EFT09861.1| replication initiator protein DnaA [Propionibacterium acnes HL082PA2] Length = 474 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 85/234 (36%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91 + D ++ ++ A + P + +++ G SG GK+ L + S Sbjct: 138 NPKYTFDSFVIGASNRFAHAAAVAVAEAPGKSYNPLLIYGGSGLGKTHLLHAIGRYVMSY 197 Query: 92 R--FSNIAKSLDSILIDTRKPV------------------LLEDIDLLDF---NDTQLFH 128 S + + D + L++DI L + FH Sbjct: 198 YDNVKVKYVSTEELTNDFINAIGTNRTTEFRRSYRDVDVLLVDDIQFLQSKIQTQEEFFH 257 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H ++MT+ P P L SR + + I PD + ++ + A Sbjct: 258 TFNTLHNAQKQIVMTSDRPPKLLEALEPRLRSRFEWGLLTDIQPPDLETRIAILRRKVAA 317 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +I ++ + +I R++ ++ E + ++ A + SLA VLK+ Sbjct: 318 EKITVEPDVLEFIASRIQTNIRELEGALIRVTAFASLNQQPVDISLAEVVLKDL 371 >gi|289628214|ref|ZP_06461168.1| chromosomal replication initiation protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649104|ref|ZP_06480447.1| chromosomal replication initiation protein [Pseudomonas syringae pv. aesculi str. 2250] gi|330870075|gb|EGH04784.1| chromosomal replication initiation protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 511 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 39/262 (14%), Positives = 95/262 (36%), Gaps = 38/262 (14%) Query: 15 KQKNDQPKNKEEQLFFSFPRCLGISR----DDLLVHSAIEQAVRLIDSWPSWPSRV---- 66 +Q + + + Q+ + ++R ++ + + + A +W + Sbjct: 153 QQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAA--AWQVADNPKHGYN 210 Query: 67 -VILVGPSGSGKSCLANIW----------------------SDKSRSTRFSNIAKSLDSI 103 + L G G GK+ L + +D ++ + + I + Sbjct: 211 PLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKR-- 268 Query: 104 LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 + +L++DI + + FH N++ + +++T+ +P L S Sbjct: 269 FYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKS 328 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 R V + P+ + +++K ++ + A +I QR+ ++ E + ++ Sbjct: 329 RFGWGLTVAVEPPELETRVAILMKKADQAKVDLPHDAAFFIAQRIRSNVRELEGALKRVI 388 Query: 221 NLALSRGMGITRSLAAEVLKET 242 + G IT L E LK+ Sbjct: 389 AHSHFMGRDITIELIRESLKDL 410 >gi|237801664|ref|ZP_04590125.1| chromosomal replication initiation protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024523|gb|EGI04579.1| chromosomal replication initiation protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 511 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 39/262 (14%), Positives = 95/262 (36%), Gaps = 38/262 (14%) Query: 15 KQKNDQPKNKEEQLFFSFPRCLGISR----DDLLVHSAIEQAVRLIDSWPSWPSRV---- 66 +Q + + + Q+ + ++R ++ + + + A +W + Sbjct: 153 QQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAA--AWQVADNPKHGYN 210 Query: 67 -VILVGPSGSGKSCLANIW----------------------SDKSRSTRFSNIAKSLDSI 103 + L G G GK+ L + +D ++ + + I + Sbjct: 211 PLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKR-- 268 Query: 104 LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 + +L++DI + + FH N++ + +++T+ +P L S Sbjct: 269 FYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKS 328 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 R V + P+ + +++K ++ + A +I QR+ ++ E + ++ Sbjct: 329 RFGWGLTVAVEPPELETRVAILMKKADQAKVDLPHDAAFFIAQRIRSNVRELEGALKRVI 388 Query: 221 NLALSRGMGITRSLAAEVLKET 242 + G IT L E LK+ Sbjct: 389 AHSHFMGRDITIELIRESLKDL 410 >gi|195973856|gb|ACG63493.1| chromosomal replication initiator protein DnaA [Francisella noatunensis] Length = 434 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 37/243 (15%), Positives = 88/243 (36%), Gaps = 26/243 (10%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN 82 ++ F P D +V A + A P ++ + + G SG GK+ L Sbjct: 116 QEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLHNPLFIYGGSGLGKTHLMQ 175 Query: 83 IWSDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFN 122 + +R + +S + + + ++DI + Sbjct: 176 AIGNHAREVNPNARIIYTNSEQFIKDYVNSIRLQDQDEFQRVYRSADILFIDDIQFIAGK 235 Query: 123 D---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179 + + FH N++++ +++T+ +P L SR V + +PD + Sbjct: 236 EGTAQEFFHTFNALYENGKQIILTSDKYPNEIEGLEERLVSRFGYGLTVSVDMPDLETRI 295 Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 +++K D + + AA+I + + ++ E ++++ + T +A L Sbjct: 296 AILLKKAYDLGQKLPNETAAFIAENVRTNVRELEGALNRVLTTSKFNHKDPTIEVAQACL 355 Query: 240 KET 242 ++ Sbjct: 356 RDV 358 >gi|330987019|gb|EGH85122.1| chromosomal replication initiation protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 511 Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 39/262 (14%), Positives = 95/262 (36%), Gaps = 38/262 (14%) Query: 15 KQKNDQPKNKEEQLFFSFPRCLGISR----DDLLVHSAIEQAVRLIDSWPSWPSRV---- 66 +Q + + + Q+ + ++R ++ + + + A +W + Sbjct: 153 QQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAA--AWQVADNPKHGYN 210 Query: 67 -VILVGPSGSGKSCLANIW----------------------SDKSRSTRFSNIAKSLDSI 103 + L G G GK+ L + +D ++ + + I + Sbjct: 211 PLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKR-- 268 Query: 104 LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 + +L++DI + + FH N++ + +++T+ +P L S Sbjct: 269 FYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKS 328 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 R V + P+ + +++K ++ + A +I QR+ ++ E + ++ Sbjct: 329 RFGWGLTVAVEPPELETRVAILMKKADQAKVDLPHDAAFFIAQRIRSNVRELEGALKRVI 388 Query: 221 NLALSRGMGITRSLAAEVLKET 242 + G IT L E LK+ Sbjct: 389 AHSHFMGRDITIELIRESLKDL 410 >gi|302185840|ref|ZP_07262513.1| chromosomal replication initiation protein [Pseudomonas syringae pv. syringae 642] Length = 511 Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 39/262 (14%), Positives = 95/262 (36%), Gaps = 38/262 (14%) Query: 15 KQKNDQPKNKEEQLFFSFPRCLGISR----DDLLVHSAIEQAVRLIDSWPSWPSRV---- 66 +Q + + + Q+ + ++R ++ + + + A +W + Sbjct: 153 QQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAA--AWQVADNPKHGYN 210 Query: 67 -VILVGPSGSGKSCLANIW----------------------SDKSRSTRFSNIAKSLDSI 103 + L G G GK+ L + +D ++ + + I + Sbjct: 211 PLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKR-- 268 Query: 104 LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 + +L++DI + + FH N++ + +++T+ +P L S Sbjct: 269 FYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKS 328 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 R V + P+ + +++K ++ + A +I QR+ ++ E + ++ Sbjct: 329 RFGWGLTVAVEPPELETRVAILMKKADQAKVDLPHDAAFFIAQRIRSNVRELEGALKRVI 388 Query: 221 NLALSRGMGITRSLAAEVLKET 242 + G IT L E LK+ Sbjct: 389 AHSHFMGRDITIELIRESLKDL 410 >gi|298484609|ref|ZP_07002714.1| Chromosomal replication initiator protein dnaA [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160866|gb|EFI01882.1| Chromosomal replication initiator protein dnaA [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 511 Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 39/262 (14%), Positives = 95/262 (36%), Gaps = 38/262 (14%) Query: 15 KQKNDQPKNKEEQLFFSFPRCLGISR----DDLLVHSAIEQAVRLIDSWPSWPSRV---- 66 +Q + + + Q+ + ++R ++ + + + A +W + Sbjct: 153 QQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAA--AWQVADNPKHGYN 210 Query: 67 -VILVGPSGSGKSCLANIW----------------------SDKSRSTRFSNIAKSLDSI 103 + L G G GK+ L + +D ++ + + I + Sbjct: 211 PLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKR-- 268 Query: 104 LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 + +L++DI + + FH N++ + +++T+ +P L S Sbjct: 269 FYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKS 328 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 R V + P+ + +++K ++ + A +I QR+ ++ E + ++ Sbjct: 329 RFGWGLTVAVEPPELETRVAILMKKADQAKVDLPHDAAFFIAQRIRSNVRELEGALKRVI 388 Query: 221 NLALSRGMGITRSLAAEVLKET 242 + G IT L E LK+ Sbjct: 389 AHSHFMGRDITIELIRESLKDL 410 >gi|71737409|ref|YP_272316.1| chromosomal replication initiation protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|123734066|sp|Q48QK0|DNAA_PSE14 RecName: Full=Chromosomal replication initiator protein DnaA gi|71557962|gb|AAZ37173.1| chromosomal replication initiator protein DnaA [Pseudomonas syringae pv. phaseolicola 1448A] gi|320321688|gb|EFW77787.1| chromosomal replication initiation protein [Pseudomonas syringae pv. glycinea str. B076] Length = 511 Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 39/262 (14%), Positives = 95/262 (36%), Gaps = 38/262 (14%) Query: 15 KQKNDQPKNKEEQLFFSFPRCLGISR----DDLLVHSAIEQAVRLIDSWPSWPSRV---- 66 +Q + + + Q+ + ++R ++ + + + A +W + Sbjct: 153 QQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAA--AWQVADNPKHGYN 210 Query: 67 -VILVGPSGSGKSCLANIW----------------------SDKSRSTRFSNIAKSLDSI 103 + L G G GK+ L + +D ++ + + I + Sbjct: 211 PLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKR-- 268 Query: 104 LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 + +L++DI + + FH N++ + +++T+ +P L S Sbjct: 269 FYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKS 328 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 R V + P+ + +++K ++ + A +I QR+ ++ E + ++ Sbjct: 329 RFGWGLTVAVEPPELETRVAILMKKADQAKVDLPHDAAFFIAQRIRSNVRELEGALKRVI 388 Query: 221 NLALSRGMGITRSLAAEVLKET 242 + G IT L E LK+ Sbjct: 389 AHSHFMGRDITIELIRESLKDL 410 >gi|257485599|ref|ZP_05639640.1| chromosomal replication initiation protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 511 Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 39/262 (14%), Positives = 95/262 (36%), Gaps = 38/262 (14%) Query: 15 KQKNDQPKNKEEQLFFSFPRCLGISR----DDLLVHSAIEQAVRLIDSWPSWPSRV---- 66 +Q + + + Q+ + ++R ++ + + + A +W + Sbjct: 153 QQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAA--AWQVADNPKHGYN 210 Query: 67 -VILVGPSGSGKSCLANIW----------------------SDKSRSTRFSNIAKSLDSI 103 + L G G GK+ L + +D ++ + + I + Sbjct: 211 PLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKR-- 268 Query: 104 LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 + +L++DI + + FH N++ + +++T+ +P L S Sbjct: 269 FYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKS 328 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 R V + P+ + +++K ++ + A +I QR+ ++ E + ++ Sbjct: 329 RFGWGLTVAVEPPELETRVAILMKKADQAKVDLPHDAAFFIAQRIRSNVRELEGALKRVI 388 Query: 221 NLALSRGMGITRSLAAEVLKET 242 + G IT L E LK+ Sbjct: 389 AHSHFMGRDITIELIRESLKDL 410 >gi|313817643|gb|EFS55357.1| replication initiator protein DnaA [Propionibacterium acnes HL046PA2] gi|314961663|gb|EFT05764.1| replication initiator protein DnaA [Propionibacterium acnes HL002PA2] gi|315081497|gb|EFT53473.1| replication initiator protein DnaA [Propionibacterium acnes HL078PA1] gi|315083080|gb|EFT55056.1| replication initiator protein DnaA [Propionibacterium acnes HL027PA2] gi|315086613|gb|EFT58589.1| replication initiator protein DnaA [Propionibacterium acnes HL002PA3] Length = 428 Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 85/234 (36%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91 + D ++ ++ A + P + +++ G SG GK+ L + S Sbjct: 92 NPKYTFDSFVIGASNRFAHAAAVAVAEAPGKSYNPLLIYGGSGLGKTHLLHAIGRYVMSY 151 Query: 92 R--FSNIAKSLDSILIDTRKPV------------------LLEDIDLLDF---NDTQLFH 128 S + + D + L++DI L + FH Sbjct: 152 YDNVKVKYVSTEELTNDFINAIGTNRTTEFRRSYRDVDVLLVDDIQFLQSKIQTQEEFFH 211 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H ++MT+ P P L SR + + I PD + ++ + A Sbjct: 212 TFNTLHNAQKQIVMTSDRPPKLLEALEPRLRSRFEWGLLTDIQPPDLETRIAILRRKVAA 271 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +I ++ + +I R++ ++ E + ++ A + SLA VLK+ Sbjct: 272 EKITVEPDVLEFIASRIQTNIRELEGALIRVTAFASLNQQPVDISLAEVVLKDL 325 >gi|288573679|ref|ZP_06392036.1| chromosomal replication initiator protein DnaA [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569420|gb|EFC90977.1| chromosomal replication initiator protein DnaA [Dethiosulfovibrio peptidovorans DSM 11002] Length = 440 Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 38/236 (16%), Positives = 77/236 (32%), Gaps = 26/236 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90 +V + A + P + + G G GK+ L + + Sbjct: 107 NPNYLFSSFVVGKSNRLAHAASLAVAESPGAAYNPLFIWGGVGLGKTHLMHAIGHHALQN 166 Query: 91 -------------------TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLFH 128 T N + T +L++DI L + + FH Sbjct: 167 DRNLKVGYVSSEKFTNELITSIKNNRTAEFRARYRTMDLLLIDDIQFLAGKESTQEEFFH 226 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 NS+H +++++ P L SR + V I PD + ++ K Sbjct: 227 TFNSLHDGKKQIVLSSDRPPKDIKSIEDRLVSRFEWGLVTDIQSPDYETRIAILTKKAEF 286 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 R + + + Y+ Q + ++ E ++++ A +T +E LK+ + Sbjct: 287 RNYPMPEDVINYLAQNVPSNIRELEGALNRVIACAELNSEPVTVENTSEWLKDIVR 342 >gi|86142844|ref|ZP_01061283.1| chromosomal replication initiation protein [Leeuwenhoekiella blandensis MED217] gi|85830876|gb|EAQ49334.1| chromosomal replication initiation protein [Leeuwenhoekiella blandensis MED217] Length = 476 Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 40/260 (15%), Positives = 89/260 (34%), Gaps = 37/260 (14%) Query: 10 FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66 F +P + E QL + ++ L + A + + P Sbjct: 126 FVIPGIRNL----EIESQL------NPNYNFENFLEGDSNRLARSAGMAVANKPGGTSFN 175 Query: 67 -VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTR 108 +++ G G GK+ LA+ ++K ++ K+ + I Sbjct: 176 PLLIFGGVGLGKTHLAHAIGVQIKDRYPDKTVLYISAEKFTQQYIESVKKNNRNDFIHFY 235 Query: 109 KPV---LLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 + + +++DI LL FHI N +HQ +++T+ PV L SR Sbjct: 236 QVIDVLIVDDIQLLSGKAGTQDVFFHIFNHLHQNGKQVVLTSDKAPVDMQDIEQRLLSRF 295 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 K ++ P + +I + + + + ++ ++ ++ E + + Sbjct: 296 KWGLSAELQSPGFETRVSIIKNKLYQDGVEMPEDIVEFLANNIKTNIRELEGAIISLIAH 355 Query: 223 ALSRGMGITRSLAAEVLKET 242 + I LA +++ Sbjct: 356 SSFNRKEINLELAKKIVDNY 375 >gi|152989598|ref|YP_001345397.1| chromosomal replication initiation protein [Pseudomonas aeruginosa PA7] gi|150964756|gb|ABR86781.1| chromosomal replication initiator protein DnaA [Pseudomonas aeruginosa PA7] Length = 512 Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 37/235 (15%), Positives = 85/235 (36%), Gaps = 34/235 (14%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPS-----RVVILVGPSGSGKSCLANIW-------- 84 + ++ + + + A +W + + L G G GK+ L + Sbjct: 181 FTFENFVEGKSNQLARAA--AWQVADNLKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKN 238 Query: 85 --------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLF 127 +D ++ + + I + + +L++DI + + F Sbjct: 239 PNAKVVYLHSERFVADMVKALQLNAINEFKR--FYRSVDALLIDDIQFFARKERSQEEFF 296 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + +++T+ +P L SR V + P+ + +++K Sbjct: 297 HTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAE 356 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +I + A +I QR+ ++ E + ++ + G IT L E LK+ Sbjct: 357 QAKIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELIRESLKDL 411 >gi|124007462|ref|ZP_01692168.1| chromosomal replication initiator protein DnaA [Microscilla marina ATCC 23134] gi|123987118|gb|EAY26867.1| chromosomal replication initiator protein DnaA [Microscilla marina ATCC 23134] Length = 493 Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 39/244 (15%), Positives = 81/244 (33%), Gaps = 31/244 (12%) Query: 32 FPRCLGISRDDLLVHSAIEQA----VRLIDSWPSWPSRVVILVGPSGSGKSCLANIW--- 84 F + + + A + + ++L G G GK+ L Sbjct: 152 FQINPRYTFESFIEGDCNRLARSAGLAVAQKPGVTSFNPLMLYGGVGLGKTHLVQAIGNY 211 Query: 85 -SDKSRSTRFSNIAKSLDSILIDT---------------RKPVLLEDIDLLDFNDTQ--- 125 + + + + I+ + ++D+ L + Sbjct: 212 VQENGQKKILYVSSDRFTNQFIEALKNNDLQSFTDYYMQADVLAIDDVQFLSGKEKTQEI 271 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 F+I N +HQ ++MT+ P L SR K + PD + +I K+ Sbjct: 272 FFNIFNHLHQSGKQIIMTSDCPPKELKGLQERLLSRFKWGLTADLKQPDLETRIAIIHKI 331 Query: 186 FA---DRQIFIDKKLAAYIVQRMERSLVFAE-KLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++ I I K+ Y+ ++ ++ E +V + +L IT LA + +++ Sbjct: 332 LQSEDNKNIEISGKVVEYLAHSIDSNVRELEGAIVSIIAKASL-NQSPITMELAKQTVQQ 390 Query: 242 TQQC 245 Q Sbjct: 391 IVQP 394 >gi|224536057|ref|ZP_03676596.1| hypothetical protein BACCELL_00921 [Bacteroides cellulosilyticus DSM 14838] gi|224522316|gb|EEF91421.1| hypothetical protein BACCELL_00921 [Bacteroides cellulosilyticus DSM 14838] Length = 462 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 40/260 (15%), Positives = 89/260 (34%), Gaps = 29/260 (11%) Query: 16 QKNDQPKNKEEQLFFSF-PR-CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV----VIL 69 QK + + P + + + + + + + ++ P++ + Sbjct: 104 QKKVIGREIPQAPIADLDPHLNPEYNFETFIEGYSNKLSRSVAEAVAQNPAKTIFNPLFF 163 Query: 70 VGPSGSGKSCLANIWSDK-------SRSTRFSNIA---KSLDSILIDTRKPVL------- 112 G SG GK+ LAN K R S + DS+ +T + Sbjct: 164 YGASGVGKTHLANAIGTKIKELYPDKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQSID 223 Query: 113 ------LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 +++ + FHI N +HQ L++T+ PV L +R K Sbjct: 224 ILIIDDIQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVLLQGMEERLITRFKWGM 283 Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 V ++ P + + ++ + ++ YI + + S+ E +V + + Sbjct: 284 VAELERPTVELRKNILRNKIHRDGLQFPPEVIDYIAENVGDSVRDLEGIVISIMAHSTIY 343 Query: 227 GMGITRSLAAEVLKETQQCD 246 I L ++++ + + Sbjct: 344 NKEIDLELTQRIVRKVVKSE 363 >gi|301384271|ref|ZP_07232689.1| chromosomal replication initiation protein [Pseudomonas syringae pv. tomato Max13] gi|302063879|ref|ZP_07255420.1| chromosomal replication initiation protein [Pseudomonas syringae pv. tomato K40] gi|302131962|ref|ZP_07257952.1| chromosomal replication initiation protein [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 511 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 39/262 (14%), Positives = 95/262 (36%), Gaps = 38/262 (14%) Query: 15 KQKNDQPKNKEEQLFFSFPRCLGISR----DDLLVHSAIEQAVRLIDSWPSWPSRV---- 66 +Q + + + Q+ + ++R ++ + + + A +W + Sbjct: 153 QQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAA--AWQVADNPKHGYN 210 Query: 67 -VILVGPSGSGKSCLANIW----------------------SDKSRSTRFSNIAKSLDSI 103 + L G G GK+ L + +D ++ + + I + Sbjct: 211 PLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKR-- 268 Query: 104 LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 + +L++DI + + FH N++ + +++T+ +P L S Sbjct: 269 FYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKS 328 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 R V + P+ + +++K ++ + A +I QR+ ++ E + ++ Sbjct: 329 RFGWGLTVAVEPPELETRVAILMKKADQAKVDLPHDAAFFIAQRIRSNVRELEGALKRVI 388 Query: 221 NLALSRGMGITRSLAAEVLKET 242 + G IT L E LK+ Sbjct: 389 AHSHFMGRDITIELIRESLKDL 410 >gi|28867244|ref|NP_789863.1| chromosomal replication initiator protein DnaA [Pseudomonas syringae pv. tomato str. DC3000] gi|38257476|sp|Q88BK3|DNAA_PSESM RecName: Full=Chromosomal replication initiator protein DnaA gi|28850478|gb|AAO53558.1| chromosomal replication initiator protein DnaA [Pseudomonas syringae pv. tomato str. DC3000] Length = 511 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 39/262 (14%), Positives = 95/262 (36%), Gaps = 38/262 (14%) Query: 15 KQKNDQPKNKEEQLFFSFPRCLGISR----DDLLVHSAIEQAVRLIDSWPSWPSRV---- 66 +Q + + + Q+ + ++R ++ + + + A +W + Sbjct: 153 QQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAA--AWQVADNPKHGYN 210 Query: 67 -VILVGPSGSGKSCLANIW----------------------SDKSRSTRFSNIAKSLDSI 103 + L G G GK+ L + +D ++ + + I + Sbjct: 211 PLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKR-- 268 Query: 104 LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 + +L++DI + + FH N++ + +++T+ +P L S Sbjct: 269 FYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKS 328 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 R V + P+ + +++K ++ + A +I QR+ ++ E + ++ Sbjct: 329 RFGWGLTVAVEPPELETRVAILMKKADQAKVDLPHDAAFFIAQRIRSNVRELEGALKRVI 388 Query: 221 NLALSRGMGITRSLAAEVLKET 242 + G IT L E LK+ Sbjct: 389 AHSHFMGRDITIELIRESLKDL 410 >gi|172056046|ref|YP_001812506.1| chromosomal replication initiator protein DnaA [Exiguobacterium sibiricum 255-15] gi|226735812|sp|B1YGB2|DNAA_EXIS2 RecName: Full=Chromosomal replication initiator protein DnaA gi|171988567|gb|ACB59489.1| chromosomal replication initiator protein DnaA [Exiguobacterium sibiricum 255-15] Length = 464 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 42/263 (15%), Positives = 90/263 (34%), Gaps = 28/263 (10%) Query: 11 FVPDKQKNDQPKNKEEQLFF-SFP-RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-- 66 P K K + ++L + D ++ S A + P++ Sbjct: 102 VAPAKTKAQKTPKSSDELVMSELGQLNEKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYN 161 Query: 67 -VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPV------------ 111 + + G G GK+ L + + + S + D + Sbjct: 162 PLFIYGGVGLGKTHLMHAIGQYVQDQKLGTKIAYVSSEQFTNDFINSIRDNKTVQFRNKY 221 Query: 112 ------LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 L++DI L + + FH N++H +++++ P L SR Sbjct: 222 RNIDVLLIDDIQFLAGKEQTQEEFFHTFNALHNDQKQIIISSDRPPKEIPTLEDRLRSRF 281 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 + + I+ PD + ++ K Q+ + ++ YI +++ ++ E + ++ Sbjct: 282 EWGLITDITPPDLETRIAILRKKANAEQLDVSNEVMLYIASQIDTNIRELEGALTRVIAY 341 Query: 223 ALSRGMGITRSLAAEVLKETQQC 245 A G I ++AAE L Sbjct: 342 ANLVGRTIDPNVAAEALHNIMPA 364 >gi|26986755|ref|NP_742180.1| chromosomal replication initiation protein [Pseudomonas putida KT2440] gi|60392185|sp|P0A116|DNAA_PSEPK RecName: Full=Chromosomal replication initiator protein DnaA gi|60392186|sp|P0A117|DNAA_PSEPU RecName: Full=Chromosomal replication initiator protein DnaA gi|24981346|gb|AAN65644.1|AE016191_1 chromosomal replication initiator protein DnaA [Pseudomonas putida KT2440] gi|581460|emb|CAA32893.1| unnamed protein product [Pseudomonas putida] Length = 506 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 37/235 (15%), Positives = 84/235 (35%), Gaps = 34/235 (14%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIW-------- 84 + D + + + A +W + + L G G GK+ L + Sbjct: 175 FTFDTFVEGKSNQLARAA--AWQVADNPKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKN 232 Query: 85 --------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLF 127 +D ++ + + I + + +L++DI + + F Sbjct: 233 PNAKVVYLHSERFVADMVKALQLNAINEFKR--FYRSVDALLIDDIQFFARKERSQEEFF 290 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + +++T+ +P L SR V + P+ + +++K Sbjct: 291 HTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAD 350 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ + A +I QR+ ++ E + ++ + G IT L E LK+ Sbjct: 351 QAKVELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDL 405 >gi|314980257|gb|EFT24351.1| replication initiator protein DnaA [Propionibacterium acnes HL072PA2] Length = 500 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 85/234 (36%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91 + D ++ ++ A + P + +++ G SG GK+ L + S Sbjct: 164 NPKYTFDSFVIGASNRFAHAAAVAVAEAPGKSYNPLLIYGGSGLGKTHLLHAIGRYVMSY 223 Query: 92 R--FSNIAKSLDSILIDTRKPV------------------LLEDIDLLDF---NDTQLFH 128 S + + D + L++DI L + FH Sbjct: 224 YDNVKVKYVSTEELTNDFINAIGTNRTTEFRRSYRDVDVLLVDDIQFLQSKIQTQEEFFH 283 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H ++MT+ P P L SR + + I PD + ++ + A Sbjct: 284 TFNTLHNAQKQIVMTSDRPPKLLEALEPRLRSRFEWGLLTDIQPPDLETRIAILRRKVAA 343 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +I ++ + +I R++ ++ E + ++ A + SLA VLK+ Sbjct: 344 EKITVEPDVLEFIASRIQTNIRELEGALIRVTAFASLNQQPVDISLAEVVLKDL 397 >gi|283956179|ref|ZP_06373664.1| chromosomal replication initiator protein [Campylobacter jejuni subsp. jejuni 1336] gi|283792333|gb|EFC31117.1| chromosomal replication initiator protein [Campylobacter jejuni subsp. jejuni 1336] Length = 440 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 80/233 (34%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWP-----SRVVILVGPSGSGKSCLANIWSDKSR 89 + + +V + + A + + + GP+G GK+ L + S Sbjct: 102 NPSFTFESFVVGDSNKYAYGACKAVAHKDKLGKLYNPIFVYGPTGLGKTHLLQAVGNASL 161 Query: 90 STRFSNIAKSLDSILIDTRK------------------PVLLEDIDLLDFND---TQLFH 128 I + ++ + D +L++D+ L D + F Sbjct: 162 EMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEEFFF 221 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 I N I D ++MT+ P L SR + I+ P D +I K Sbjct: 222 IFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIRKKCEF 281 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 I + + YI + ++ E ++ ++ A G IT LA V+K+ Sbjct: 282 NDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKSVMKD 334 >gi|213968441|ref|ZP_03396584.1| chromosomal replication initiator protein DnaA [Pseudomonas syringae pv. tomato T1] gi|213926729|gb|EEB60281.1| chromosomal replication initiator protein DnaA [Pseudomonas syringae pv. tomato T1] Length = 509 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 39/262 (14%), Positives = 95/262 (36%), Gaps = 38/262 (14%) Query: 15 KQKNDQPKNKEEQLFFSFPRCLGISR----DDLLVHSAIEQAVRLIDSWPSWPSRV---- 66 +Q + + + Q+ + ++R ++ + + + A +W + Sbjct: 151 QQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAA--AWQVADNPKHGYN 208 Query: 67 -VILVGPSGSGKSCLANIW----------------------SDKSRSTRFSNIAKSLDSI 103 + L G G GK+ L + +D ++ + + I + Sbjct: 209 PLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKR-- 266 Query: 104 LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 + +L++DI + + FH N++ + +++T+ +P L S Sbjct: 267 FYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKS 326 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 R V + P+ + +++K ++ + A +I QR+ ++ E + ++ Sbjct: 327 RFGWGLTVAVEPPELETRVAILMKKADQAKVDLPHDAAFFIAQRIRSNVRELEGALKRVI 386 Query: 221 NLALSRGMGITRSLAAEVLKET 242 + G IT L E LK+ Sbjct: 387 AHSHFMGRDITIELIRESLKDL 408 >gi|309791068|ref|ZP_07685604.1| chromosomal replication initiator protein DnaA [Oscillochloris trichoides DG6] gi|308226923|gb|EFO80615.1| chromosomal replication initiator protein DnaA [Oscillochloris trichoides DG6] Length = 462 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 37/251 (14%), Positives = 88/251 (35%), Gaps = 31/251 (12%) Query: 23 NKEEQLFFSFPRC-----LGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSG 74 ++ QL S + +V S+ A + P + + L G G Sbjct: 107 DRAVQLDLSSAMRTGMLNPKYTFSRFIVGSSNRLAHAACLAVADNPGQHYNPLFLYGGVG 166 Query: 75 SGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLE 114 GK+ L + S+K + + I + + + L++ Sbjct: 167 LGKTHLLHAIGNYVLDRDPEINVLYVSSEKFTNDMINAIRRQQTEEFRMRYRNIDVLLVD 226 Query: 115 DIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 DI + + + FH N++H +++++ P + L SR + + I Sbjct: 227 DIQFIAGKEGTQEEFFHTFNTLHSAAKHIVISSDKPPKAIPTLEERLRSRFEWGLIADIQ 286 Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231 PD + ++ + I ++ ++ +++ ++ E ++++ A G+ I Sbjct: 287 PPDLETRTAILRTKGEQMNVEIPNEVIDFLAHKVQSNIRELEGSLNRVAAFAEQHGLPIN 346 Query: 232 RSLAAEVLKET 242 +A L + Sbjct: 347 VEVATSALADL 357 >gi|89092264|ref|ZP_01165218.1| chromosomal replication initiator protein, DnaA [Oceanospirillum sp. MED92] gi|89083352|gb|EAR62570.1| chromosomal replication initiator protein, DnaA [Oceanospirillum sp. MED92] Length = 543 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 34/236 (14%), Positives = 82/236 (34%), Gaps = 30/236 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIW------- 84 + + + + + A+ P + + G G GK+ L + Sbjct: 209 NQSFTFESFVQGKSNQLALAAARQVGDNPGVSYNPLFIYGGVGLGKTHLMHAVGNEMLKR 268 Query: 85 ---------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQL 126 +D ++ + + I + +L++DI + + Sbjct: 269 NPNAKIVYLHSERFVADMVKALQLNAINDFKR--YYRSVDALLIDDIQFFAGKERSQEEF 326 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH N++ + +++T+ +P L SR V I P+ + +++K Sbjct: 327 FHTFNALLEGGQQMILTSDRYPKEINGVEERLKSRFGWGLTVAIEPPELETRVAILMKKA 386 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + ++ + A ++ Q++ ++ E + ++ A G IT E LK+ Sbjct: 387 DEARVRLPDDAAFFLAQKIRSNVRELEGALKRVIANAHFTGSAITTPFIKESLKDL 442 >gi|229587579|ref|YP_002869698.1| chromosomal replication initiation protein [Pseudomonas fluorescens SBW25] gi|259645257|sp|B0B0A5|DNAA_PSEFS RecName: Full=Chromosomal replication initiator protein DnaA gi|164564809|emb|CAJ57270.1| chromosomal replication initiator protein DnaA [Pseudomonas fluorescens SBW25] Length = 501 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 36/235 (15%), Positives = 85/235 (36%), Gaps = 34/235 (14%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIW-------- 84 + ++ + + + A +W + + L G G GK+ L + Sbjct: 170 FTFENFVEGKSNQLARAA--AWQVADNPKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKN 227 Query: 85 --------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLF 127 +D ++ + + I + + +L++DI + + F Sbjct: 228 PNAKVVYLHSERFVADMVKALQLNAINEFKR--FYRSVDALLIDDIQFFARKERSQEEFF 285 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + +++T+ +P L SR V + P+ + +++K Sbjct: 286 HTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAD 345 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ + A +I QR+ ++ E + ++ + G IT L E LK+ Sbjct: 346 QAKVDLPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDL 400 >gi|86154004|ref|ZP_01072206.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni HB93-13] gi|85842542|gb|EAQ59755.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni HB93-13] Length = 440 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 80/233 (34%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWP-----SRVVILVGPSGSGKSCLANIWSDKSR 89 + + +V + + A + + + GP+G GK+ L + S Sbjct: 102 NPSFTFESFVVGDSNKYAYGACKAIAHKDKLGKLYNPIFIYGPTGLGKTHLLQAVGNASL 161 Query: 90 STRFSNIAKSLDSILIDTRK------------------PVLLEDIDLLDFND---TQLFH 128 I + ++ + D +L++D+ L D + F Sbjct: 162 EMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEEFFF 221 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 I N I D ++MT+ P L SR + I+ P D +I K Sbjct: 222 IFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIRKKCEF 281 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 I + + YI + ++ E ++ ++ A G IT LA V+K+ Sbjct: 282 NDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKSVMKD 334 >gi|328675183|gb|AEB27858.1| Chromosomal replication initiator protein DnaA [Francisella cf. novicida 3523] Length = 491 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 39/243 (16%), Positives = 89/243 (36%), Gaps = 26/243 (10%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN 82 E+ F P D +V A + A P ++ + + G SG GK+ L Sbjct: 148 EEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLHNPLFIYGGSGLGKTHLMQ 207 Query: 83 IWSDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFN 122 + +R + +S + + +L++DI + Sbjct: 208 AIGNHAREVNPNAKIIYTNSEQFIKDYVNSIRLQDQDEFQRVYRSADILLIDDIQFIAGK 267 Query: 123 D---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179 + + FH N++++ +++T+ +P L SR V + +PD + Sbjct: 268 EGTAQEFFHTFNALYENGKQIILTSDKYPNEIEGLEERLVSRFGYGLTVSVDMPDLETRI 327 Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 +++K D + + AA+I + + ++ E ++++ + T +A L Sbjct: 328 AILLKKAHDLGQKLPNETAAFIAENVRTNVRELEGALNRVLTTSKFNYKDPTIEVAQACL 387 Query: 240 KET 242 ++ Sbjct: 388 RDV 390 >gi|313496418|gb|ADR57784.1| DnaA [Pseudomonas putida BIRD-1] Length = 504 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 37/235 (15%), Positives = 84/235 (35%), Gaps = 34/235 (14%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIW-------- 84 + D + + + A +W + + L G G GK+ L + Sbjct: 173 FTFDTFVEGKSNQLARAA--AWQVADNPKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKN 230 Query: 85 --------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLF 127 +D ++ + + I + + +L++DI + + F Sbjct: 231 PNAKVVYLHSERFVADMVKALQLNAINEFKR--FYRSVDALLIDDIQFFARKERSQEEFF 288 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + +++T+ +P L SR V + P+ + +++K Sbjct: 289 HTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAD 348 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ + A +I QR+ ++ E + ++ + G IT L E LK+ Sbjct: 349 QAKVELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDL 403 >gi|331011887|gb|EGH91943.1| chromosomal replication initiation protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 511 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 39/262 (14%), Positives = 95/262 (36%), Gaps = 38/262 (14%) Query: 15 KQKNDQPKNKEEQLFFSFPRCLGISR----DDLLVHSAIEQAVRLIDSWPSWPSRV---- 66 +Q + + + Q+ + ++R ++ + + + A +W + Sbjct: 153 QQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAA--AWQVADNPKHGYN 210 Query: 67 -VILVGPSGSGKSCLANIW----------------------SDKSRSTRFSNIAKSLDSI 103 + L G G GK+ L + +D ++ + + I + Sbjct: 211 PLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKR-- 268 Query: 104 LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 + +L++DI + + FH N++ + +++T+ +P L S Sbjct: 269 FYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKS 328 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 R V + P+ + +++K ++ + A +I QR+ ++ E + ++ Sbjct: 329 RFGWGLTVAVEPPELETRVAILMKKADQAKVDLPHDAAFFIAQRIRSNVRELEGALKRVI 388 Query: 221 NLALSRGMGITRSLAAEVLKET 242 + G IT L E LK+ Sbjct: 389 AHSHFMGRDITIELIRESLKDL 410 >gi|327457414|gb|EGF04069.1| replication initiator protein DnaA [Propionibacterium acnes HL092PA1] Length = 500 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 85/234 (36%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91 + D ++ ++ A + P + +++ G SG GK+ L + S Sbjct: 164 NPKYTFDSFVIGASNRFAHAAAVAVAEAPGKSYNPLLIYGGSGLGKTHLLHAIGRYVMSY 223 Query: 92 R--FSNIAKSLDSILIDTRKPV------------------LLEDIDLLDF---NDTQLFH 128 S + + D + L++DI L + FH Sbjct: 224 YDNVKVKYVSTEELTNDFINAIGTNRTTEFRRSYRDVDVLLVDDIQFLQSKIQTQEEFFH 283 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H ++MT+ P P L SR + + I PD + ++ + A Sbjct: 284 TFNTLHNAQKQIVMTSDRPPKLLEALEPRLRSRFEWGLLTDIQPPDLETRIAILRRKVAA 343 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +I ++ + +I R++ ++ E + ++ A + SLA VLK+ Sbjct: 344 EKITVEPDVLEFIASRIQTNIRELEGALIRVTAFASLNQQPVDISLAEVVLKDL 397 >gi|256003888|ref|ZP_05428875.1| chromosomal replication initiator protein DnaA [Clostridium thermocellum DSM 2360] gi|255992226|gb|EEU02321.1| chromosomal replication initiator protein DnaA [Clostridium thermocellum DSM 2360] gi|316939067|gb|ADU73101.1| chromosomal replication initiator protein DnaA [Clostridium thermocellum DSM 1313] Length = 443 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 91/234 (38%), Gaps = 29/234 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW------- 84 + D ++ ++ A + P + + + G G GK+ L + Sbjct: 108 NPKYTFDTFVIGNSNRFAHAAALAVAEAPGKAYNPLFIYGGVGLGKTHLMHAIGHYILEQ 167 Query: 85 ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDF---NDTQLFH 128 S+K + + I + + + + L++DI + + + FH Sbjct: 168 NSSQRVLYVSSEKFTNELINAIKDNRNEEFRSKYRNIDVLLIDDIQFIAGKERTEEEFFH 227 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 N++++ + +++++ P + L D L SR + + + PD + ++ K Sbjct: 228 TFNALYEANKQIILSSDKPPKE--ISLEDRLRSRFEWGLIADMQAPDLETRIAILRKKAQ 285 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + + ++ +I ++ ++ E ++++ + IT LA+E LK+ Sbjct: 286 LENLTVPNEVIVFIADKIASNIRELEGALNRVIAYSSLTENEITVELASEALKD 339 >gi|281418689|ref|ZP_06249708.1| chromosomal replication initiator protein DnaA [Clostridium thermocellum JW20] gi|281407773|gb|EFB38032.1| chromosomal replication initiator protein DnaA [Clostridium thermocellum JW20] Length = 443 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 91/234 (38%), Gaps = 29/234 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW------- 84 + D ++ ++ A + P + + + G G GK+ L + Sbjct: 108 NPKYTFDTFVIGNSNRFAHAAALAVAEAPGKAYNPLFIYGGVGLGKTHLMHAIGHYILEQ 167 Query: 85 ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDF---NDTQLFH 128 S+K + + I + + + + L++DI + + + FH Sbjct: 168 NSSQRVLYVSSEKFTNELINAIKDNRNEEFRSKYRNIDVLLIDDIQFIAGKERTEEEFFH 227 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 N++++ + +++++ P + L D L SR + + + PD + ++ K Sbjct: 228 TFNALYEANKQIILSSDKPPKE--ISLEDRLRSRFEWGLIADMQAPDLETRIAILRKKAQ 285 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + + ++ +I ++ ++ E ++++ + IT LA+E LK+ Sbjct: 286 LENLTVPNEVIVFIADKIASNIRELEGALNRVIAYSSLTENEITVELASEALKD 339 >gi|125974856|ref|YP_001038766.1| chromosomal replication initiation protein [Clostridium thermocellum ATCC 27405] gi|166201880|sp|A3DHZ4|DNAA_CLOTH RecName: Full=Chromosomal replication initiator protein DnaA gi|125715081|gb|ABN53573.1| chromosomal replication initiator protein DnaA [Clostridium thermocellum ATCC 27405] Length = 443 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 91/234 (38%), Gaps = 29/234 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW------- 84 + D ++ ++ A + P + + + G G GK+ L + Sbjct: 108 NPKYTFDTFVIGNSNRFAHAAALAVAEAPGKAYNPLFIYGGVGLGKTHLMHAIGHYILEQ 167 Query: 85 ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDF---NDTQLFH 128 S+K + + I + + + + L++DI + + + FH Sbjct: 168 NSSQKVLYVSSEKFTNELINAIKDNRNEEFRSKYRNIDVLLIDDIQFIAGKERTEEEFFH 227 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 N++++ + +++++ P + L D L SR + + + PD + ++ K Sbjct: 228 TFNALYEANKQIILSSDKPPKE--ISLEDRLRSRFEWGLIADMQAPDLETRIAILRKKAQ 285 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + + ++ +I ++ ++ E ++++ + IT LA+E LK+ Sbjct: 286 LENLTVPNEVIVFIADKIASNIRELEGALNRVIAYSSLTENEITVELASEALKD 339 >gi|148545260|ref|YP_001265362.1| chromosomal replication initiation protein [Pseudomonas putida F1] gi|166214693|sp|A5VWB8|DNAA_PSEP1 RecName: Full=Chromosomal replication initiator protein DnaA gi|148509318|gb|ABQ76178.1| chromosomal replication initiator protein DnaA [Pseudomonas putida F1] Length = 505 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 37/235 (15%), Positives = 84/235 (35%), Gaps = 34/235 (14%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIW-------- 84 + D + + + A +W + + L G G GK+ L + Sbjct: 174 FTFDTFVEGKSNQLARAA--AWQVADNPKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKN 231 Query: 85 --------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLF 127 +D ++ + + I + + +L++DI + + F Sbjct: 232 PNAKVVYLHSERFVADMVKALQLNAINEFKR--FYRSVDALLIDDIQFFARKERSQEEFF 289 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + +++T+ +P L SR V + P+ + +++K Sbjct: 290 HTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAD 349 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ + A +I QR+ ++ E + ++ + G IT L E LK+ Sbjct: 350 QAKVELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDL 404 >gi|299141383|ref|ZP_07034520.1| bacterial DnaA protein helix-turn-helix domain protein [Prevotella oris C735] gi|298577343|gb|EFI49212.1| bacterial DnaA protein helix-turn-helix domain protein [Prevotella oris C735] Length = 468 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 42/263 (15%), Positives = 91/263 (34%), Gaps = 37/263 (14%) Query: 13 PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPS-RVVI 68 P D+ + + QL ++ + + ++ + L I PS P + Sbjct: 115 PSPMDVDKAADIDTQL------DPHLNFKNYVEGTSNKLVRSLGLSIAEHPSQPQFNPMF 168 Query: 69 LVGPSGSGKSCL---------------------ANIWSDK-SRSTRFSNIAKSLDSILID 106 + GPSG GK+ L A ++ + + S+I + Sbjct: 169 IYGPSGCGKTHLINAIGLRCKQLYPEKRVLYISARLFQSQFVDANLHSSINDFIR--FYQ 226 Query: 107 TRKPVLLEDIDL---LDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 T ++++DI FHI N + + +L+ + PV L +R Sbjct: 227 TIDMLIVDDIQEWVNATKTQDTFFHIFNHLFRNGKRILLVSDRPPVDLKGMNERLLTRFS 286 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + ++ P+ + ++ + I ++ +I S+ E +V+ + + Sbjct: 287 CGLIAELEKPNVELCTDILKAKIRRDGLHIPDEVIRFIASTANGSVRDLEGVVNSLLAYS 346 Query: 224 LSRGMGITRSLAAEVLKETQQCD 246 + + LA V+K + D Sbjct: 347 VVYNSNVDMRLAERVIKRAVKVD 369 >gi|269791620|ref|YP_003316524.1| chromosomal replication initiator protein DnaA [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099255|gb|ACZ18242.1| chromosomal replication initiator protein DnaA [Thermanaerovibrio acidaminovorans DSM 6589] Length = 447 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 43/255 (16%), Positives = 89/255 (34%), Gaps = 27/255 (10%) Query: 13 PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVIL 69 P++QK + Q D+ +V + A + P + + Sbjct: 93 PNEQKRAEAAAMPLQ-SQRGGLNPNYVFDNFVVGKSNRLAHAASLAAAESPGVAYNPLFI 151 Query: 70 VGPSGSGKSCLANIWSD-----KSRSTRFSNIAKSLDSILIDTR---------------K 109 G G GK+ L + + + ++ + LI Sbjct: 152 WGGVGLGKTHLMHAIGHYVCDNQPGAKVVYVSSEKFTNELISAIQNNRTQDFKAKYRSVD 211 Query: 110 PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 +L++DI L + + FH NS+H +++++ P L SR + Sbjct: 212 VLLIDDIQFLADKESTQEEFFHTFNSLHDAKKQVVISSDRPPKDIQRVEERLVSRFEWGL 271 Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 V I PD + ++ K R + + + ++ Q + ++ E ++++ + Sbjct: 272 VTDIQPPDLETRVAILQKKAEMRGYEVPEDVIFFLAQNIPSNIRELEGALNRVVACSELN 331 Query: 227 GMGITRSLAAEVLKE 241 G I+ AAE LK+ Sbjct: 332 GEVISVENAAEWLKD 346 >gi|313904725|ref|ZP_07838099.1| chromosomal replication initiator protein DnaA [Eubacterium cellulosolvens 6] gi|313470518|gb|EFR65846.1| chromosomal replication initiator protein DnaA [Eubacterium cellulosolvens 6] Length = 446 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 39/241 (16%), Positives = 87/241 (36%), Gaps = 29/241 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86 + D +V S + A + P ++ + L G G GK+ L N I + Sbjct: 106 NPRYTFDTFVVGSNNKFAHAASLAVAESPGKIYNPLFLYGGVGLGKTHLMNSIAHFILEN 165 Query: 87 KSRSTRFSNIAKSLDSILIDTRK------------------PVLLEDIDLLDFND---TQ 125 ++ + +ID + +L++DI + + + Sbjct: 166 HPGIRIVYVTSEEFTNEVIDAIRNGSNTAINKFREKYRNIDVLLIDDIQFIIGKESTQEE 225 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 FH N++H +++++ P + + SR + + I +PD + ++ K Sbjct: 226 FFHTFNALHGAGKQIIISSDRPPKDMDILEDRIRSRFEWGLMADIQMPDYETRMAILRKK 285 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 +D + YI ++ ++ E ++K+ + I LA + L++ Sbjct: 286 QEIDGTSVDDDVLEYIASNVKSNIRELEGSLNKVIAFSNLEQKEIDIELAQKALRDIISP 345 Query: 246 D 246 D Sbjct: 346 D 346 >gi|320161310|ref|YP_004174534.1| chromosomal replication initiator protein DnaA [Anaerolinea thermophila UNI-1] gi|319995163|dbj|BAJ63934.1| chromosomal replication initiator protein DnaA [Anaerolinea thermophila UNI-1] Length = 447 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 41/256 (16%), Positives = 92/256 (35%), Gaps = 27/256 (10%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISR---DDLLVHSAIEQAVRLIDSWPSWPSRV---V 67 D + + P+ +Q F SR D+ +V ++ A + P++ + Sbjct: 86 DMPEEEVPEESHQQAFLRSGTSTINSRYTFDNFIVGASNRMAHAACMAVAESPAKAYNPL 145 Query: 68 ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV---------------- 111 L G G GK+ L + + ++S + S + D + Sbjct: 146 FLYGGVGLGKTHLLHAIGNAAQSRGLQVLYVSSEEFTNDLINAIRSHTTQAFRERYRNMD 205 Query: 112 --LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 L++DI + + + FH N++H D +++++ P + L SR + Sbjct: 206 VLLIDDIQFIAGKESTQEEFFHTFNTLHGQDKQIVISSDRSPKALVTLEERLRSRFEWGL 265 Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 V I PD + ++ + + I + ++ ++ E + ++ + Sbjct: 266 TVDIQPPDLETRIAILRSKAERNNKEVPYPILESIARLVQSNIRELEGALTRVLAFSDLS 325 Query: 227 GMGITRSLAAEVLKET 242 GM ++ L L + Sbjct: 326 GMPLSPQLVHTALADM 341 >gi|159035675|ref|YP_001534928.1| chromosomal replication initiator protein DnaA [Salinispora arenicola CNS-205] gi|157914510|gb|ABV95937.1| chromosomal replication initiator protein DnaA [Salinispora arenicola CNS-205] Length = 591 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 88/233 (37%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSD----- 86 + ++ S+ A + P+ + + G SG GK+ L + Sbjct: 254 NPKYMFETFVIGSSNRFAHAASVAVAESPAKAYNPLFIYGSSGLGKTHLLHAIGHYATTL 313 Query: 87 -KSRSTRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDFND---TQLFH 128 + S R+ + + + + R +L++DI L+ + + FH Sbjct: 314 GNAHSVRYVSTEEFTNDFINSLRDDKTSAFQRRYRDVDILLIDDIQFLENRERTQEEFFH 373 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H + +++T+ P L +R + + I PD + ++ K A Sbjct: 374 TFNTLHNANKQIVITSDRSPKQLATLEDRLRTRFEWGLLADIQPPDLETRIAILQKKAAQ 433 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++F + +I R+ S+ E + ++ A + SLA EVL++ Sbjct: 434 ERLFAPPDVLEFIASRVSNSIRELEGALIRVTAFASLTRSSVELSLAEEVLRD 486 >gi|313765026|gb|EFS36390.1| replication initiator protein DnaA [Propionibacterium acnes HL013PA1] gi|314930919|gb|EFS94750.1| replication initiator protein DnaA [Propionibacterium acnes HL067PA1] gi|315099342|gb|EFT71318.1| replication initiator protein DnaA [Propionibacterium acnes HL059PA2] Length = 500 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 85/234 (36%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91 + D ++ ++ A + P + +++ G SG GK+ L + S Sbjct: 164 NPKYTFDSFVIGASNRFAHAAAVAVAEAPGKSYNPLLIYGGSGLGKTHLLHAIGRYVMSY 223 Query: 92 R--FSNIAKSLDSILIDTRKPV------------------LLEDIDLLDF---NDTQLFH 128 S + + D + L++DI L + FH Sbjct: 224 YDNVKVKYVSTEELTNDFINAIGTNRTTEFRRSYRDVDVLLVDDIQFLQSKIQTQEEFFH 283 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H ++MT+ P P L SR + + I PD + ++ + A Sbjct: 284 TFNTLHNAQKQIVMTSDRPPKLLEALEPRLRSRFEWGLLTDIQPPDLETRIAILRRKVAA 343 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +I ++ + +I R++ ++ E + ++ A + SLA VLK+ Sbjct: 344 EKITVEPDVLEFIASRIQTNIRELEGALIRVTAFASLNQQPVDISLAEVVLKDL 397 >gi|50841497|ref|YP_054724.1| chromosomal replication initiator protein DnaA [Propionibacterium acnes KPA171202] gi|289424325|ref|ZP_06426108.1| chromosomal replication initiator protein DnaA [Propionibacterium acnes SK187] gi|289427361|ref|ZP_06429074.1| chromosomal replication initiator protein DnaA [Propionibacterium acnes J165] gi|295129530|ref|YP_003580193.1| chromosomal replication initiator protein DnaA [Propionibacterium acnes SK137] gi|61212561|sp|Q6ABL5|DNAA_PROAC RecName: Full=Chromosomal replication initiator protein DnaA gi|50839099|gb|AAT81766.1| chromosomal replication initiator protein DnaA [Propionibacterium acnes KPA171202] gi|289155022|gb|EFD03704.1| chromosomal replication initiator protein DnaA [Propionibacterium acnes SK187] gi|289159291|gb|EFD07482.1| chromosomal replication initiator protein DnaA [Propionibacterium acnes J165] gi|291377061|gb|ADE00916.1| chromosomal replication initiator protein DnaA [Propionibacterium acnes SK137] gi|313771066|gb|EFS37032.1| replication initiator protein DnaA [Propionibacterium acnes HL074PA1] gi|313792568|gb|EFS40654.1| replication initiator protein DnaA [Propionibacterium acnes HL110PA1] gi|313803569|gb|EFS44751.1| replication initiator protein DnaA [Propionibacterium acnes HL110PA2] gi|313814221|gb|EFS51935.1| replication initiator protein DnaA [Propionibacterium acnes HL025PA1] gi|313821532|gb|EFS59246.1| replication initiator protein DnaA [Propionibacterium acnes HL036PA1] gi|314963873|gb|EFT07973.1| replication initiator protein DnaA [Propionibacterium acnes HL082PA1] gi|314969083|gb|EFT13181.1| replication initiator protein DnaA [Propionibacterium acnes HL037PA1] gi|314985203|gb|EFT29295.1| replication initiator protein DnaA [Propionibacterium acnes HL005PA1] gi|314987112|gb|EFT31204.1| replication initiator protein DnaA [Propionibacterium acnes HL005PA2] gi|315097162|gb|EFT69138.1| replication initiator protein DnaA [Propionibacterium acnes HL038PA1] gi|315107498|gb|EFT79474.1| replication initiator protein DnaA [Propionibacterium acnes HL030PA1] gi|315109866|gb|EFT81842.1| replication initiator protein DnaA [Propionibacterium acnes HL030PA2] gi|327444469|gb|EGE91123.1| replication initiator protein DnaA [Propionibacterium acnes HL013PA2] gi|327446723|gb|EGE93377.1| replication initiator protein DnaA [Propionibacterium acnes HL043PA2] gi|328757976|gb|EGF71592.1| replication initiator protein DnaA [Propionibacterium acnes HL020PA1] gi|332674399|gb|AEE71215.1| chromosomal replication initiator protein DnaA [Propionibacterium acnes 266] Length = 500 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 85/234 (36%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91 + D ++ ++ A + P + +++ G SG GK+ L + S Sbjct: 164 NPKYTFDSFVIGASNRFAHAAAVAVAEAPGKSYNPLLIYGGSGLGKTHLLHAIGRYVMSY 223 Query: 92 R--FSNIAKSLDSILIDTRKPV------------------LLEDIDLLDF---NDTQLFH 128 S + + D + L++DI L + FH Sbjct: 224 YDNVKVKYVSTEELTNDFINAIGTNRTTEFRRSYRDVDVLLVDDIQFLQSKIQTQEEFFH 283 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H ++MT+ P P L SR + + I PD + ++ + A Sbjct: 284 TFNTLHNAQKQIVMTSDRPPKLLEALEPRLRSRFEWGLLTDIQPPDLETRIAILRRKVAA 343 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +I ++ + +I R++ ++ E + ++ A + SLA VLK+ Sbjct: 344 EKITVEPDVLEFIASRIQTNIRELEGALIRVTAFASLNQQPVDISLAEVVLKDL 397 >gi|330500915|ref|YP_004377784.1| chromosomal replication initiation protein [Pseudomonas mendocina NK-01] gi|328915201|gb|AEB56032.1| chromosomal replication initiation protein [Pseudomonas mendocina NK-01] Length = 494 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 37/235 (15%), Positives = 85/235 (36%), Gaps = 34/235 (14%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIW-------- 84 + D+ + + + A +W + + L G G GK+ L + Sbjct: 163 FTFDNFVEGKSNQLARAA--AWQVADNPKHGYNPLFLYGGVGLGKTHLMHAVGNHLLAKN 220 Query: 85 --------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLF 127 +D ++ + + I + + +L++DI + + F Sbjct: 221 PNAKVVYLHSERFVADMVKALQLNAINEFKR--FYRSVDALLIDDIQFFAKKERSQEEFF 278 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + +++T+ +P L SR V + P+ + +++K Sbjct: 279 HTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAD 338 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ + A +I QR+ ++ E + ++ + G IT L E LK+ Sbjct: 339 QAKVDLPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDL 393 >gi|188995956|ref|YP_001930207.1| chromosomal replication initiator protein DnaA [Sulfurihydrogenibium sp. YO3AOP1] gi|188931023|gb|ACD65653.1| chromosomal replication initiator protein DnaA [Sulfurihydrogenibium sp. YO3AOP1] Length = 459 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 39/237 (16%), Positives = 90/237 (37%), Gaps = 26/237 (10%) Query: 32 FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----I 83 + D+L+V + + A + + ++ + + G G GK+ L + + Sbjct: 120 LSLNPKYTFDNLIVGNNNKVAFQACLAVTENLGKIYNPLFIYGDVGLGKTHLLHGTAYHV 179 Query: 84 WSDKSRSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLLDFNDT---Q 125 + S + A + S L +L++DI L + + Sbjct: 180 LAKSSSAKIIYTTADTFASELFSYLEKGMILEFRKKYREVDLLLIDDIQFLVGKERTQIE 239 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 +HI N ++ +++++ P L SR + +V+I+ PD + + +K Sbjct: 240 FYHIFNVLYSLGKQIILSSDQPPSKLNGIEKRLISRFSSGLIVEITKPDLETKINITLKK 299 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + + +I + + S+ E + ++ + G IT +A VLK+ Sbjct: 300 MKELNVEFSRDVVLFIAKTVNTSVRELEGSIKRLKAYSEIMGRPITLDVARTVLKDV 356 >gi|254483197|ref|ZP_05096430.1| chromosomal replication initiator protein DnaA [marine gamma proteobacterium HTCC2148] gi|214036568|gb|EEB77242.1| chromosomal replication initiator protein DnaA [marine gamma proteobacterium HTCC2148] Length = 475 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 83/235 (35%), Gaps = 30/235 (12%) Query: 36 LGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIW-------- 84 + D+ + + + A+ P + L G G GK+ L + Sbjct: 154 ETYTFDNFVEGKSNQLALAAARQVAENPGDSYNPLFLYGGVGLGKTHLMHAVGNALRLNK 213 Query: 85 --------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID---LLDFNDTQLF 127 +D ++ + + I+ T +L++DI D + + F Sbjct: 214 PNAKVVYLHSERFVADMVKALQLNAISDFKR--YYRTVDALLIDDIQFFAKKDRSQEEFF 271 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + +++T +P L SR V + P+ + +++K Sbjct: 272 HTFNALLEGGQQMILTCDRYPKEIDGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAT 331 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +I + A +I QR+ ++ E + ++ A G I L E LK+ Sbjct: 332 QARINLPPDAAFFIAQRIRSNVRELEGALKRVIASAHFTGKDIDIDLIKESLKDL 386 >gi|81427617|ref|YP_394614.1| chromosomal replication initiation protein A [Lactobacillus sakei subsp. sakei 23K] gi|123755887|sp|Q38ZS4|DNAA_LACSS RecName: Full=Chromosomal replication initiator protein DnaA gi|78609256|emb|CAI54303.1| Chromosomal replication initiation protein A [Lactobacillus sakei subsp. sakei 23K] Length = 448 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 47/267 (17%), Positives = 89/267 (33%), Gaps = 36/267 (13%) Query: 10 FFVPDKQKNDQPKNKEEQLFFSFPRCLGISR----------DDLLVHSAIEQAVRL---I 56 F +P + N P EE+ + R D + + A + Sbjct: 78 FVLPGESDNLTPLEPEEEHVLTKAETPTFLRETHLNSKYTFDTFVTGKGNQMAHAAALVV 137 Query: 57 DSWPSWPSRVVILVGPSGSGKSCLANIWSDK----------------SRSTRFSNIAKSL 100 P + L G G GK+ L + + + F N ++ Sbjct: 138 SEEPGVLYNPLFLYGGVGLGKTHLMQAIGHQLLESKPETNVKYVTSEAFANDFINSIQTK 197 Query: 101 DSILIDTR----KPVLLEDIDLLD---FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 + +L++DI + FH N ++ +++T+ P Sbjct: 198 NQEKFRQEYRNVDLLLVDDIQFFADKEGTQEEFFHTFNDLYNDKKQIVLTSDRLPNEIPK 257 Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213 L SR K V I+ PD + ++ + I + +YI +++ ++ E Sbjct: 258 LQERLVSRFKWGLPVDITPPDLETRIAILRNKADAEHLEIPEDTLSYIAGQIDSNVRELE 317 Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLK 240 + ++ A + IT SLAA+ LK Sbjct: 318 GALVRVQAYATMQNAEITTSLAADALK 344 >gi|194332854|ref|YP_002014714.1| chromosomal replication initiation protein [Prosthecochloris aestuarii DSM 271] gi|194310672|gb|ACF45067.1| chromosomal replication initiator protein DnaA [Prosthecochloris aestuarii DSM 271] Length = 492 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 39/254 (15%), Positives = 88/254 (34%), Gaps = 29/254 (11%) Query: 16 QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVG 71 Q D+ + ++ ++ F + L+ A S P +++ G Sbjct: 135 QSADRERFEKNRIKFESHLNPKYTFSSLIRGDCNSLAFAASKSVAQNPGQNAFNPLVIYG 194 Query: 72 PSGSGKSCLANIWSDKSRSTRFSN--IAKSLDSILIDTRKPV------------------ 111 G GK+ + ++ R S + S + ID + Sbjct: 195 GVGLGKTHMMQAIGNQVRENCISEYVLYVSSEKFAIDFVNAIQNGNIQEFSSFYRKIDVL 254 Query: 112 LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168 +++DI + ++FHI N++HQ + +++++ L SR V Sbjct: 255 IIDDIQFFAGKEKTQEEIFHIFNTLHQSNKQIILSSDRPIKEIKGIEDRLISRFNWGLSV 314 Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK-LVDKMDNLALSRG 227 + PD + + +I + +D + +I + +++ E +V + +L Sbjct: 315 DLQPPDYETRKAIIQSKLEQNGVNLDSTIVDFIATNVTQNVRELEGCIVKLLAAHSLFNQ 374 Query: 228 MGITRSLAAEVLKE 241 I + LK+ Sbjct: 375 -EIDLAFTKSTLKD 387 >gi|167560990|ref|ZP_02353906.1| chromosomal replication initiation protein [Burkholderia oklahomensis EO147] Length = 387 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 87/234 (37%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWS-----D 86 ++ D+ + A + A P + L G G GK+ L + D Sbjct: 53 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 112 Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128 K+ + A+ S ++ + +D +DLL +D + F+ Sbjct: 113 KAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 172 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + +++T+ T+P L SR + V I P+ + ++++ Sbjct: 173 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 232 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + +A ++ + + ++ E + K+ + G IT L E LK+ Sbjct: 233 EGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDL 286 >gi|148654189|ref|YP_001274394.1| chromosomal replication initiation protein [Roseiflexus sp. RS-1] gi|166215156|sp|A5UP91|DNAA_ROSS1 RecName: Full=Chromosomal replication initiator protein DnaA gi|148566299|gb|ABQ88444.1| chromosomal replication initiator protein DnaA [Roseiflexus sp. RS-1] Length = 481 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 37/253 (14%), Positives = 90/253 (35%), Gaps = 31/253 (12%) Query: 21 PKNKEEQLFFSFPRC-----LGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGP 72 + +QL + D ++ + A + P++ + L G Sbjct: 124 ERTPPQQLELHRAVRSSMLNPRYTFDRFIIGPSNRLANAACMAVAEHPAQAYNPLFLYGG 183 Query: 73 SGSGKSCLANIWSD-------KSRSTRFSNIAKSLDSILIDTR-------------KPVL 112 G GK+ L + + + S+ + D I R +L Sbjct: 184 VGLGKTHLLHAIGNFVLDRDPEVNVLYVSSETFTNDLINSIRRQQTEEFRIRYRNIDILL 243 Query: 113 LEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 ++DI + + + FH N++H +++++ P + L SR + +V Sbjct: 244 IDDIQFIAGKEQTQEEFFHTFNTLHSAGKQIVISSDRSPKAILTLEERLRSRFEWGLIVD 303 Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229 + +PD + ++ + + + + ++ QR++ + E ++++ A + Sbjct: 304 VQMPDLETRTAILRAKAEQSPVPVPQPVIDFLAQRIQSHIRELEGCLNRVTAFAQMYNVP 363 Query: 230 ITRSLAAEVLKET 242 +T +A L E Sbjct: 364 VTIEVATAALSEL 376 >gi|296131551|ref|YP_003638798.1| chromosomal replication initiator protein DnaA [Thermincola sp. JR] gi|296030129|gb|ADG80897.1| chromosomal replication initiator protein DnaA [Thermincola potens JR] Length = 451 Score = 111 bits (279), Expect = 8e-23, Method: Composition-based stats. Identities = 44/249 (17%), Positives = 90/249 (36%), Gaps = 26/249 (10%) Query: 19 DQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGS 75 D KN E L S + D +V ++ A + + + G G Sbjct: 99 DIKKNYNEDLSISTHLNPKYTFDTFVVGNSNRFAHAAALAVAEAPAKAYNPLFIYGGVGL 158 Query: 76 GKSCLANIW------SDKSRSTRFSNIAKSLDSILIDTR--------------KPVLLED 115 GK+ L + S + + K + ++ R +L++D Sbjct: 159 GKTHLMQAIGHYILEQEYSLRVVYVSSEKFTNELINSIRDDKTVDFRNKYRNMDILLIDD 218 Query: 116 IDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 I L + + FH N++++ + +++++ P L SR + + I Sbjct: 219 IQFLAGKERTQEEFFHTFNALYEANKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDIQP 278 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232 PD + ++ K + + + YI R++ ++ E + ++ + IT Sbjct: 279 PDLETRIAILRKKAQLENLMVPNDVMLYIANRIQSNIRELEGALIRVMAYSSLTNSEITT 338 Query: 233 SLAAEVLKE 241 LAAE LK+ Sbjct: 339 DLAAEALKD 347 >gi|314926333|gb|EFS90164.1| replication initiator protein DnaA [Propionibacterium acnes HL036PA3] Length = 500 Score = 111 bits (279), Expect = 8e-23, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 85/234 (36%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91 + D ++ ++ A + P + +++ G SG GK+ L + S Sbjct: 164 NPKYTFDSFVIGASNRFAHAAAVAVAEAPGKSYNPLLIYGGSGLGKTHLLHAIGRYVMSY 223 Query: 92 R--FSNIAKSLDSILIDTRKPV------------------LLEDIDLLDF---NDTQLFH 128 S + + D + L++DI L + FH Sbjct: 224 YDNVKVKYVSTEELTNDFINAIGTNRTTEFRRSYRDVDVLLVDDIQFLQSKIQTQEEFFH 283 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H ++MT+ P P L SR + + I PD + ++ + A Sbjct: 284 TFNTLHNAQKQIVMTSDRPPKLLEALEPRLRSRFEWGLLTDIQPPDLETRIAILRRKVAA 343 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +I ++ + +I R++ ++ E + ++ A + SLA VLK+ Sbjct: 344 EKITVEPDVLEFIASRIQTNIRELEGALIRVTAFASLNQQPVDISLAEVVLKDL 397 >gi|167568254|ref|ZP_02361128.1| chromosomal replication initiation protein [Burkholderia oklahomensis C6786] Length = 390 Score = 111 bits (279), Expect = 8e-23, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 87/234 (37%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWS-----D 86 ++ D+ + A + A P + L G G GK+ L + D Sbjct: 56 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 115 Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128 K+ + A+ S ++ + +D +DLL +D + F+ Sbjct: 116 KAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 175 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + +++T+ T+P L SR + V I P+ + ++++ Sbjct: 176 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 235 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + +A ++ + + ++ E + K+ + G IT L E LK+ Sbjct: 236 EGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDL 289 >gi|328956383|ref|YP_004373769.1| chromosomal replication initiation protein [Carnobacterium sp. 17-4] gi|328672707|gb|AEB28753.1| chromosomal replication initiation protein [Carnobacterium sp. 17-4] Length = 445 Score = 111 bits (279), Expect = 8e-23, Method: Composition-based stats. Identities = 41/234 (17%), Positives = 80/234 (34%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87 + D ++ + A P + G G GK+ L + + Sbjct: 111 NTKYTFDTFVIGKGNQMAHAAALVVAEEPGTIYNPLFFYGGVGLGKTHLMHAIGHQMLLL 170 Query: 88 ---SRSTRFSNIAKSLDSILI-------------DTRKPVLLEDIDLLD---FNDTQLFH 128 +R S+ + D I + +L++DI + FH Sbjct: 171 NPDARVKYVSSETFANDFINSIQNKTQEKFRNEYRSVDLLLVDDIQFFADKEGTQEEFFH 230 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N+++ +++T+ P L SR V I+ PD + ++ K Sbjct: 231 TFNALYDDRKQIVLTSDRLPNEIPKLQERLVSRFAWGLSVDITPPDLETRIAILRKKANA 290 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ I +YI +++ ++ E + ++ A IT SLAA+ LK Sbjct: 291 ERLEIPGDTLSYIAGQIDSNIRELEGALVRVQAYAAIESRDITTSLAADALKSM 344 >gi|302877246|ref|YP_003845810.1| chromosomal replication initiator protein DnaA [Gallionella capsiferriformans ES-2] gi|302580035|gb|ADL54046.1| chromosomal replication initiator protein DnaA [Gallionella capsiferriformans ES-2] Length = 451 Score = 111 bits (279), Expect = 8e-23, Method: Composition-based stats. Identities = 35/233 (15%), Positives = 82/233 (35%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87 ++ D+ ++ A + A P + + G G GK+ L ++ Sbjct: 117 NQSLTFDNFVIGKANQLAFAAATQVAELPGVSYNPLFIYGGVGLGKTHLTQAIGNQILIN 176 Query: 88 -SRSTRFSNIAKSLDSILIDTR---------------KPVLLEDIDLLDF---NDTQLFH 128 ++ A+ + ++ +L++DI + F+ Sbjct: 177 RPQAKVCYMHAERYVADVVRAYQTNKFEEFKQYYHSLDVLLIDDIQFFAGKNKTQEEFFY 236 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++ +++T+ TFP L SR + I P+ + +++K A Sbjct: 237 AFNTLVDSHKQVILTSDTFPKELTGLESRLVSRFGWGLTIAIEPPELEMRVAILLKKAAI 296 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 +D +A +I + + ++ E + +++ I+ A E LK+ Sbjct: 297 SGYVLDDAVAFFIAKHVNSNVRELEGALKRVEAYTKFHKRIISVDTAKEALKD 349 >gi|291457888|ref|ZP_06597278.1| DNA replication initiator protein, ATPase [Oribacterium sp. oral taxon 078 str. F0262] gi|291419432|gb|EFE93151.1| DNA replication initiator protein, ATPase [Oribacterium sp. oral taxon 078 str. F0262] Length = 454 Score = 111 bits (279), Expect = 8e-23, Method: Composition-based stats. Identities = 41/247 (16%), Positives = 88/247 (35%), Gaps = 36/247 (14%) Query: 31 SFP-------RCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCL 80 FP + D +V S+ A + P + + G +G GK+ L Sbjct: 105 DFPQILKKANLNPRYTFDSFVVGSSNNLAHAASLAVAESPGEIYNPLYIYGGAGLGKTHL 164 Query: 81 ANIWSD-------KSRSTRF----------------SNIAKSLDSILIDTRKPVLLEDID 117 + +S +N++ + +L++DI Sbjct: 165 MQSIAHFILKSNPQSNIRYVTSETFINEFVDSIRNKNNLSPAEFRKNYRDLDVLLIDDIQ 224 Query: 118 LLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 + + + FH N++++ +++ + P L SR + +V I +PD Sbjct: 225 FIIGKEGTQEEFFHTFNTLYENKRQIIIASDKPPRDIDNLEDRLRSRFEVGLIVDIQMPD 284 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234 + ++ K ID ++ YI ++ ++ E + K+ ++ +T L Sbjct: 285 YETRMAILRKKEELEGYSIDNEVIKYIATNIKSNVRELEGALTKIVAMSRLEKKDVTLEL 344 Query: 235 AAEVLKE 241 A E+LK+ Sbjct: 345 AEELLKD 351 >gi|94323531|gb|ABF17877.1| chromosomal replication initiator protein [Staphylococcus xylosus] Length = 455 Score = 111 bits (279), Expect = 8e-23, Method: Composition-based stats. Identities = 39/233 (16%), Positives = 89/233 (38%), Gaps = 28/233 (12%) Query: 40 RDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW-----SDKSRST 91 + ++ A + P+ + + G G GK+ L + ++ + Sbjct: 124 FETFVIGPGNRFPHAASLAVAEAPAQAYNPLFIYGGVGLGKTHLMHAIGHYVLANNPDAK 183 Query: 92 RFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINSI 133 ++ + I + + +L++DI + + + FH N + Sbjct: 184 VIYTSSEKFTNEFIKSIRDNKTERFREKYRNIDVLLIDDIQFIQNKEQTQEEFFHTFNEL 243 Query: 134 HQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 HQ + +++++ P L D L SR + +V I+ PD + ++ K + + Sbjct: 244 HQANKQIVISSDRPPKEIA-KLEDRLRSRFEWGLIVDITPPDYETRMAILQKKIGEENLD 302 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 I + YI +++ ++ E + ++ + +G IT L A LK+ Q Sbjct: 303 IPTEALTYIANQIQSNIRELEGALTRVLAFSKLQGQPITTELTAAALKDIIQA 355 >gi|289667649|ref|ZP_06488724.1| chromosomal replication initiation protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 442 Score = 111 bits (279), Expect = 8e-23, Method: Composition-based stats. Identities = 44/244 (18%), Positives = 86/244 (35%), Gaps = 27/244 (11%) Query: 29 FFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 F+ + + + + A++ ++L G +G GK+ L Sbjct: 101 PFAGNLDSHYTFANFVEGRSNQLGLAAAIQAAQKPGDRAHNPLLLYGSTGLGKTHLMFAA 160 Query: 85 SDKSRSTR-------------FSNIAKSLDSILIDT-------RKPVLLEDIDLLDFND- 123 + R FS + ++L +D +L++DI D Sbjct: 161 GNALRQANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQQIDALLIDDIQFFAGKDR 220 Query: 124 --TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 + FH N++ +++T +P P L SRL V I PD + + Sbjct: 221 TQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLSVAIDPPDFETRAAI 280 Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++ +R I +A I ++M ++ E ++ + A G IT A E L++ Sbjct: 281 VLAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARANFTGRSITVEFAQETLRD 340 Query: 242 TQQC 245 + Sbjct: 341 LLRA 344 >gi|163938014|ref|YP_001642898.1| chromosomal replication initiation protein [Bacillus weihenstephanensis KBAB4] gi|229014656|ref|ZP_04171770.1| Chromosomal replication initiator protein dnaA [Bacillus mycoides DSM 2048] gi|229065149|ref|ZP_04200442.1| Chromosomal replication initiator protein dnaA [Bacillus cereus AH603] gi|229136315|ref|ZP_04265062.1| Chromosomal replication initiator protein dnaA [Bacillus cereus BDRD-ST196] gi|229170193|ref|ZP_04297879.1| Chromosomal replication initiator protein dnaA [Bacillus cereus AH621] gi|226735778|sp|A9VM90|DNAA_BACWK RecName: Full=Chromosomal replication initiator protein DnaA gi|23193191|gb|AAN14420.1|AF319579_1 DnaA [Bacillus weihenstephanensis] gi|163860211|gb|ABY41270.1| chromosomal replication initiator protein DnaA [Bacillus weihenstephanensis KBAB4] gi|228613294|gb|EEK70433.1| Chromosomal replication initiator protein dnaA [Bacillus cereus AH621] gi|228647187|gb|EEL03275.1| Chromosomal replication initiator protein dnaA [Bacillus cereus BDRD-ST196] gi|228716178|gb|EEL67897.1| Chromosomal replication initiator protein dnaA [Bacillus cereus AH603] gi|228746667|gb|EEL96556.1| Chromosomal replication initiator protein dnaA [Bacillus mycoides DSM 2048] Length = 446 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 36/233 (15%), Positives = 86/233 (36%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86 + D ++ S A + P++ + + G G GK+ L + + Sbjct: 112 NPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIEH 171 Query: 87 KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 + ++ + I++ + +L++DI L + + FH Sbjct: 172 NPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFH 231 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H+ +++++ P L SR + + I+ PD + ++ K Sbjct: 232 TFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 291 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I ++ YI +++ ++ E + ++ + + LAAE LK Sbjct: 292 EGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDMNADLAAEALKN 344 >gi|146305043|ref|YP_001185508.1| chromosomal replication initiation protein [Pseudomonas mendocina ymp] gi|145573244|gb|ABP82776.1| chromosomal replication initiator protein DnaA [Pseudomonas mendocina ymp] Length = 494 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 37/235 (15%), Positives = 85/235 (36%), Gaps = 34/235 (14%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIW-------- 84 + D+ + + + A +W + + L G G GK+ L + Sbjct: 163 FTFDNFVEGKSNQLARAA--AWQVADNPKHGYNPLFLYGGVGLGKTHLMHAVGNHLLAKN 220 Query: 85 --------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLF 127 +D ++ + + I + + +L++DI + + F Sbjct: 221 PNAKVVYLHSERFVADMVKALQLNAINEFKR--FYRSVDALLIDDIQFFAKKERSQEEFF 278 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + +++T+ +P L SR V + P+ + +++K Sbjct: 279 HTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAD 338 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ + A +I QR+ ++ E + ++ + G IT L E LK+ Sbjct: 339 QAKVELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDL 393 >gi|5354184|gb|AAD42393.1|AF157493_1 chromosomal replication initiator protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 484 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 43/264 (16%), Positives = 97/264 (36%), Gaps = 34/264 (12%) Query: 12 VPDKQKNDQPKNKEE---QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSR 65 VP K+ P+ K E Q F + D+ +V A + A R ++ Sbjct: 127 VPATPKSTSPEKKAEGEDQNQFE----ERYNFDNFVVGKANDLAYRAACTFAEGGKLDFN 182 Query: 66 VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILI 105 + L G +G GK+ L + + ++ A + + + Sbjct: 183 PLFLYGGTGLGKTHLMHAVGIEYLKRHPNSTALYMSAEKFMYDFVASMRAKDTHSFKARL 242 Query: 106 DTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 + ++++D+ + D + FH +N + L+++A P + SRL Sbjct: 243 RSADLLMIDDVQFIAGKDSTQEEFFHTMNEVITAGRRLVISADRSPQDLERIESRILSRL 302 Query: 163 KAATVVKISLPDDDF-LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 V ++ D + L ++ K+ A Q+ + + + ++ +R+ ++ E ++++ Sbjct: 303 SWGLVADVNPADFELRLNIILKKLEAMPQVSMPEDIVFFLAKRICTNVRELEGALNRVVA 362 Query: 222 LALSRGMGITRSLAAEVLKETQQC 245 A I E L + + Sbjct: 363 YATLSNRPINMDFVTETLADLLRT 386 >gi|58038492|ref|YP_190456.1| chromosomal replication initiation protein [Gluconobacter oxydans 621H] gi|71151799|sp|Q5FUU1|DNAA_GLUOX RecName: Full=Chromosomal replication initiator protein DnaA gi|58000906|gb|AAW59800.1| Chromosomal replication initiator protein DnaA [Gluconobacter oxydans 621H] Length = 479 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 39/255 (15%), Positives = 88/255 (34%), Gaps = 29/255 (11%) Query: 17 KNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGP 72 + P+++ + + P + D +V E A PS + L G Sbjct: 130 QAAAPESRSD---LAVPLDPRFTFDTFIVGKPNEFAYACARRVAEKPSSPGFNPLFLYGG 186 Query: 73 SGSGKSCLANIW-SDKSRSTRFSNIAKSLDSILIDTRKPV------------------LL 113 G GK+ L + ++ +R+ + S S + + + ++ Sbjct: 187 VGLGKTHLMHAIGTELTRTGKVSVAYMSAEKFMYRFIAAIRSQSTMEFKEQLRSVDVLMI 246 Query: 114 EDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 +D+ L D + FH N++ ++++A P L +RL V I Sbjct: 247 DDLQFLIGKDNTQEEFFHTFNALVDAGRQIIVSADKSPSDLSGLEDRLRTRLGCGMVADI 306 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 + ++ + K+ Y+ ++ ++ E ++++ A G + Sbjct: 307 HATTFELRISILEAKAKASGTHVPSKVLEYLAHKITTNVRELEGALNRLIAHADLVGRPV 366 Query: 231 TRSLAAEVLKETQQC 245 T +VLK+ + Sbjct: 367 TLDTTQDVLKDMLKA 381 >gi|226942171|ref|YP_002797244.1| chromosomal replication initiation protein [Azotobacter vinelandii DJ] gi|259645245|sp|C1DFU2|DNAA_AZOVD RecName: Full=Chromosomal replication initiator protein DnaA gi|226717098|gb|ACO76269.1| Bacterial chromosomal replication initiator protein DnaA [Azotobacter vinelandii DJ] Length = 478 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 35/236 (14%), Positives = 84/236 (35%), Gaps = 34/236 (14%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIW------- 84 + ++ + + + A +W + + L G G GK+ L + Sbjct: 146 AFTFENFVEGKSNQLARAA--AWQVADNPKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKK 203 Query: 85 ---------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQL 126 +D ++ + + I + + +L++DI + + Sbjct: 204 NPNAKVVYLHSERFVADMVKALQLNAINEFKR--FYRSVDALLIDDIQFFAKKERSQEEF 261 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH N++ + +++T+ +P L SR V + P+ + +++K Sbjct: 262 FHTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKA 321 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ + A +I QR+ ++ E + ++ + IT L E LK+ Sbjct: 322 EQTKVELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFTNHPITIELIRESLKDL 377 >gi|305432571|ref|ZP_07401732.1| ATPase [Campylobacter coli JV20] gi|304444282|gb|EFM36934.1| ATPase [Campylobacter coli JV20] Length = 440 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 80/233 (34%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDS-WPSWPSRVVI----LVGPSGSGKSCLANIWSDKSR 89 + + +V + + A + + + GP+G GK+ L + S Sbjct: 102 NPSFTFESFVVGDSNKYAYGACKAISQKDKLGKLYNPIFIYGPTGLGKTHLLQAVGNASL 161 Query: 90 STRFSNIAKSLDSILIDTRK------------------PVLLEDIDLLDFND---TQLFH 128 I + ++ + D +L++D+ L D + F Sbjct: 162 EMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEEFFF 221 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 I N I D ++MT+ P L SR + I+ P D +I K Sbjct: 222 IFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIRKKCEF 281 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 I + + YI + ++ E ++ ++ A G IT LA V+K+ Sbjct: 282 NDINLSNDIINYIATSLGDNIREIEGIIISLNAYANILGQEITLELAKSVMKD 334 >gi|78045557|ref|YP_361732.1| chromosomal replication initiation protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|123744129|sp|Q3BZT1|DNAA_XANC5 RecName: Full=Chromosomal replication initiator protein DnaA gi|78033987|emb|CAJ21632.1| chromosomal replication initiator protein DnaA [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 442 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 44/244 (18%), Positives = 86/244 (35%), Gaps = 27/244 (11%) Query: 29 FFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 F+ + + + + A++ ++L G +G GK+ L Sbjct: 101 PFAGNLDSHYTFANFVEGRSNQLGLAAAIQAAQRPGDRAHNPLLLYGSTGLGKTHLMFAA 160 Query: 85 SDKSRSTR-------------FSNIAKSLDSILIDT-------RKPVLLEDIDLLDFND- 123 + R FS + ++L +D +L++DI D Sbjct: 161 GNALRQANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQQIDALLIDDIQFFAGKDR 220 Query: 124 --TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 + FH N++ +++T +P P L SRL V I PD + + Sbjct: 221 TQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLSVAIDPPDFETRAAI 280 Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++ +R I +A I ++M ++ E ++ + A G IT A E L++ Sbjct: 281 VLAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARANFTGRSITVEFAQETLRD 340 Query: 242 TQQC 245 + Sbjct: 341 LLRA 344 >gi|134297882|ref|YP_001111378.1| chromosomal replication initiation protein [Desulfotomaculum reducens MI-1] gi|172044200|sp|A4J0F0|DNAA_DESRM RecName: Full=Chromosomal replication initiator protein DnaA gi|134050582|gb|ABO48553.1| chromosomal replication initiator protein DnaA [Desulfotomaculum reducens MI-1] Length = 441 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 48/264 (18%), Positives = 101/264 (38%), Gaps = 29/264 (10%) Query: 11 FVPDKQKNDQPKNKEEQLFFSFPR--CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSR 65 F+ Q+ DQPK KE ++ + D +V ++ A + P+ Sbjct: 79 FILAGQEVDQPKPKERSSEETYINILNPRYTFDTFVVGNSNRFAHAASLAVAESPAKAYN 138 Query: 66 VVILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTR 108 + + G G GK+ L + S+K + ++I + Sbjct: 139 PLFIYGGVGLGKTHLMHAIGHYILENNQNLKVAYVTSEKFTNELINSIRDDQTVEFRNKY 198 Query: 109 KP---VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 + +L++DI L+ + + FH N++++ + +++++ P L SR Sbjct: 199 RSMDILLIDDIQFLEKKERTQEEFFHTFNTLYEANKQIIISSDRPPKEIATLEDRLRSRF 258 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIF-IDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 + + + PD + ++ K I I + AYI +++ ++ E + ++ Sbjct: 259 EWGLITDMQSPDYETRVAILRKKAQLEAIKNIPDETIAYIADKIQSNIRELEGALIRVSA 318 Query: 222 LALSRGMGITRSLAAEVLKETQQC 245 + T LAAEVLK+ Sbjct: 319 FSSLEQRDATPQLAAEVLKDVIAP 342 >gi|315500819|ref|YP_004079706.1| chromosomal replication initiator protein dnaa [Micromonospora sp. L5] gi|315407438|gb|ADU05555.1| chromosomal replication initiator protein DnaA [Micromonospora sp. L5] Length = 609 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 89/233 (38%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSD----- 86 + ++ S+ A + P+ + + G SG GK+ L + Sbjct: 272 NPKYMFETFVIGSSNRFAHAASVAVAESPAKAYNPLFIYGSSGLGKTHLLHAIGHYATTL 331 Query: 87 -KSRSTRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDFND---TQLFH 128 +RS R+ + + + + R +L++DI L+ + + FH Sbjct: 332 GNARSVRYVSTEEFTNDFINSLRDDKTSAFQRRYRDVDILLIDDIQFLENRERTQEEFFH 391 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H + +++T+ P L +R + + I PD + ++ K A Sbjct: 392 TFNTLHNANKQIVITSDRSPKQLATLEDRLRTRFEWGLLADIQPPDLETRIAILQKKAAQ 451 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++F + +I R+ S+ E + ++ A + SLA EVL++ Sbjct: 452 ERLFAPPDVLEFIASRVSNSIRELEGALIRVTAFASLTRSSVELSLAEEVLRD 504 >gi|167770836|ref|ZP_02442889.1| hypothetical protein ANACOL_02189 [Anaerotruncus colihominis DSM 17241] gi|167666876|gb|EDS11006.1| hypothetical protein ANACOL_02189 [Anaerotruncus colihominis DSM 17241] Length = 439 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 42/236 (17%), Positives = 90/236 (38%), Gaps = 30/236 (12%) Query: 38 ISRDDLLVHSAIEQAVRLIDSW---PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTR-- 92 + D +V S+ + A + P+ + + G SG GK+ L + R R Sbjct: 106 YTFDTFIVGSSNKFAHAASLAVAANPANAYNPLFIYGGSGLGKTHLLYAICAEIRKNRPN 165 Query: 93 -------FSNIAKSLDSILIDTRKP-----------VLLEDIDLLDFND---TQLFHIIN 131 A + + + D R +L++DI + + + FH N Sbjct: 166 YNIIYVKGDEFANDIITAIRDQRTAEFRERYRKADVLLVDDIQFIGGKESTQEEFFHTFN 225 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 ++++ + +++ + P L +R + + I +PD + +I + I Sbjct: 226 TLYESNKQIVLASDRPPKEIKTLEDRLRTRFEWGLLADIQIPDFETRIAIIRRKAQLLDI 285 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA----AEVLKETQ 243 + +A YI R++ ++ E V K+ L +G + +A ++L + Q Sbjct: 286 QMPDDVAEYIANRLKTNIRQLEGTVKKLKAYKLLQGTNPSIMIAQNAIRDILNDNQ 341 >gi|325288202|ref|YP_004264383.1| chromosomal replication initiator protein DnaA [Syntrophobotulus glycolicus DSM 8271] gi|324963603|gb|ADY54382.1| chromosomal replication initiator protein DnaA [Syntrophobotulus glycolicus DSM 8271] Length = 446 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 42/268 (15%), Positives = 96/268 (35%), Gaps = 30/268 (11%) Query: 1 MNLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE---QAVRLID 57 + + E + P+ +++ K S P + D ++ + A + Sbjct: 80 LTFVVEQEQNYQPEIIESNDQKFG----ILSHPLNRKYTFDTFVIGNGNRFAHAAALAVA 135 Query: 58 SWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRK--- 109 P+ + L G SG GK+ L + + + +ID+ + Sbjct: 136 ESPAKSYNPLFLYGGSGLGKTHLMHAIGHIINRNFPEMKIVYVTGEQFTNEMIDSIRYER 195 Query: 110 ------------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 +L++DI L + + FH N++++ + +++++ P Sbjct: 196 QVEFRNTYRKVDLLLIDDIQFLAGKEGTQEEFFHTFNTLYEANKQIIISSDRPPREIPTL 255 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 L SR + I+ PD + ++ K + ++ +I ++ ++ E Sbjct: 256 EERLRSRFEWGLTTDINPPDYETRIAILRKKAQLENYIVPDEIITFIASSIQSNIRELEG 315 Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKET 242 + K+ + IT LA E+LK+ Sbjct: 316 ALSKITAFCMLTNQSITVELAEEILKDM 343 >gi|56552252|ref|YP_163091.1| chromosomal replication initiation protein [Zymomonas mobilis subsp. mobilis ZM4] gi|241761682|ref|ZP_04759769.1| chromosomal replication initiator protein DnaA [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260752246|ref|YP_003225139.1| chromosomal replication initiation protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|59802902|sp|Q9S493|DNAA_ZYMMO RecName: Full=Chromosomal replication initiator protein DnaA gi|56543826|gb|AAV89980.1| chromosomal replication initiator protein DnaA [Zymomonas mobilis subsp. mobilis ZM4] gi|241373990|gb|EER63523.1| chromosomal replication initiator protein DnaA [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258551609|gb|ACV74555.1| chromosomal replication initiator protein DnaA [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 484 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 43/264 (16%), Positives = 97/264 (36%), Gaps = 34/264 (12%) Query: 12 VPDKQKNDQPKNKEE---QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSR 65 VP K+ P+ K E Q F + D+ +V A + A R ++ Sbjct: 127 VPATPKSTSPEKKAEGEDQNQFE----ERYNFDNFVVGKANDLAYRAACTFAEGGKLDFN 182 Query: 66 VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILI 105 + L G +G GK+ L + + ++ A + + + Sbjct: 183 PLFLYGGTGLGKTHLMHAVGIEYLKRHPNSTALYMSAEKFMYDFVASMRAKDTHSFKARL 242 Query: 106 DTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 + ++++D+ + D + FH +N + L+++A P + SRL Sbjct: 243 RSADLLMIDDVQFIAGKDSTQEEFFHTMNEVITAGRRLVISADRSPQDLERIESRILSRL 302 Query: 163 KAATVVKISLPDDDF-LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 V ++ D + L ++ K+ A Q+ + + + ++ +R+ ++ E ++++ Sbjct: 303 SWGLVADVNPADFELRLNIILKKLEAMPQVSMPEDIVFFLAKRICTNVRELEGALNRVVA 362 Query: 222 LALSRGMGITRSLAAEVLKETQQC 245 A I E L + + Sbjct: 363 YATLSNRPINMDFVTETLADLLRT 386 >gi|319941729|ref|ZP_08016051.1| hypothetical protein HMPREF9464_01270 [Sutterella wadsworthensis 3_1_45B] gi|319804662|gb|EFW01529.1| hypothetical protein HMPREF9464_01270 [Sutterella wadsworthensis 3_1_45B] Length = 246 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 85/227 (37%), Gaps = 12/227 (5%) Query: 25 EEQLFFSFPRCLGISR---DDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 +Q P G R ++ +V S E A L + + L GP G+G S L Sbjct: 8 PDQYLLDLPELQGRDRPTFENFVVGSNSEAAAALARMAADEGPKFLYLYGPRGAGLSHLL 67 Query: 82 NIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD-FNDTQLFHIINSIH-QYDSS 139 + + + + I K ++DID LD QL + N+++ D+ Sbjct: 68 EAYLPGTAAALYP------VPIYQPGVKRYAVDDIDALDEGYARQLLQLQNAVYVDPDAR 121 Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199 L+ R P + + +RL + +++ + + + A R I + + Sbjct: 122 LVCAGRLPPKELKL-PAGVINRLLGGLCYAVEPLNEEDRIRELARQAALRGILLTPDIGQ 180 Query: 200 YIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 +I + R + +++D + +AL +T + E + + Sbjct: 181 WISAHLPRDMRSLTRVMDVANQIALHAQRKVTLQVIREAARAAGMAE 227 >gi|315057442|gb|ADT71771.1| Chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni S3] Length = 440 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 80/233 (34%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWP-----SRVVILVGPSGSGKSCLANIWSDKSR 89 + D +V + + A + + + GP+G GK+ L + S Sbjct: 102 NPSFTFDSFVVGDSNKYAYGACKAITHKDKLGKLYNPIFVYGPTGLGKTHLLQAVGNASL 161 Query: 90 STRFSNIAKSLDSILIDTRK------------------PVLLEDIDLLDFND---TQLFH 128 I + ++ + D +L++D+ L D + F Sbjct: 162 EMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEEFFF 221 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 I N I D ++MT+ P L SR + I+ P D +I K Sbjct: 222 IFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIRKKCEF 281 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 I + + YI + ++ E ++ ++ A G IT LA V+K+ Sbjct: 282 NDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKSVMKD 334 >gi|57236915|ref|YP_178030.1| chromosomal replication initiation protein [Campylobacter jejuni RM1221] gi|71151795|sp|Q5HXF5|DNAA_CAMJR RecName: Full=Chromosomal replication initiator protein DnaA gi|57165719|gb|AAW34498.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni RM1221] Length = 440 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 80/233 (34%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWP-----SRVVILVGPSGSGKSCLANIWSDKSR 89 + D +V + + A + + + GP+G GK+ L + S Sbjct: 102 NPSFTFDSFVVGDSNKYAYGACKAITHKDKLGKLYNPIFVYGPTGLGKTHLLQAVGNASL 161 Query: 90 STRFSNIAKSLDSILIDTRK------------------PVLLEDIDLLDFND---TQLFH 128 I + ++ + D +L++D+ L D + F Sbjct: 162 EMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEEFFF 221 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 I N I D ++MT+ P L SR + I+ P D +I K Sbjct: 222 IFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIRKKCEF 281 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 I + + YI + ++ E ++ ++ A G IT LA V+K+ Sbjct: 282 NDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKSVMKD 334 >gi|121612751|ref|YP_999720.1| chromosomal replication initiation protein [Campylobacter jejuni subsp. jejuni 81-176] gi|167004697|ref|ZP_02270455.1| chromosomal replication initiation protein [Campylobacter jejuni subsp. jejuni 81-176] gi|205355742|ref|ZP_03222512.1| chromosomal replication initiator protein [Campylobacter jejuni subsp. jejuni CG8421] gi|166201874|sp|A1VX79|DNAA_CAMJJ RecName: Full=Chromosomal replication initiator protein DnaA gi|87248987|gb|EAQ71949.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni 81-176] gi|205346519|gb|EDZ33152.1| chromosomal replication initiator protein [Campylobacter jejuni subsp. jejuni CG8421] Length = 440 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 80/233 (34%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWP-----SRVVILVGPSGSGKSCLANIWSDKSR 89 + D +V + + A + + + GP+G GK+ L + S Sbjct: 102 NPSFTFDSFVVGDSNKYAYGACKAITHKDKLGKLYNPIFVYGPTGLGKTHLLQAVGNASL 161 Query: 90 STRFSNIAKSLDSILIDTRK------------------PVLLEDIDLLDFND---TQLFH 128 I + ++ + D +L++D+ L D + F Sbjct: 162 EMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEEFFF 221 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 I N I D ++MT+ P L SR + I+ P D +I K Sbjct: 222 IFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIRKKCEF 281 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 I + + YI + ++ E ++ ++ A G IT LA V+K+ Sbjct: 282 NDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKSVMKD 334 >gi|289662284|ref|ZP_06483865.1| chromosomal replication initiation protein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 442 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 44/244 (18%), Positives = 86/244 (35%), Gaps = 27/244 (11%) Query: 29 FFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 F+ + + + + A++ ++L G +G GK+ L Sbjct: 101 PFAGNLDSHYTFANFVEGRSNQLGLAAAIQAAQKPGDRAHNPLLLYGSTGLGKTHLMFAA 160 Query: 85 SDKSRSTR-------------FSNIAKSLDSILIDT-------RKPVLLEDIDLLDFND- 123 + R FS + ++L +D +L++DI D Sbjct: 161 GNALRQANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQQIDALLIDDIQFFAGKDR 220 Query: 124 --TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 + FH N++ +++T +P P L SRL V I PD + + Sbjct: 221 TQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLSVAIDPPDFETRAAI 280 Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++ +R I +A I ++M ++ E ++ + A G IT A E L++ Sbjct: 281 VLAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARANFTGRSITVEFAQETLRD 340 Query: 242 TQQC 245 + Sbjct: 341 LLRA 344 >gi|302864509|ref|YP_003833146.1| chromosomal replication initiator protein DnaA [Micromonospora aurantiaca ATCC 27029] gi|302567368|gb|ADL43570.1| chromosomal replication initiator protein DnaA [Micromonospora aurantiaca ATCC 27029] Length = 607 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 89/233 (38%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSD----- 86 + ++ S+ A + P+ + + G SG GK+ L + Sbjct: 270 NPKYMFETFVIGSSNRFAHAASVAVAESPAKAYNPLFIYGSSGLGKTHLLHAIGHYATTL 329 Query: 87 -KSRSTRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDFND---TQLFH 128 +RS R+ + + + + R +L++DI L+ + + FH Sbjct: 330 GNARSVRYVSTEEFTNDFINSLRDDKTSAFQRRYRDVDILLIDDIQFLENRERTQEEFFH 389 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H + +++T+ P L +R + + I PD + ++ K A Sbjct: 390 TFNTLHNANKQIVITSDRSPKQLATLEDRLRTRFEWGLLADIQPPDLETRIAILQKKAAQ 449 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++F + +I R+ S+ E + ++ A + SLA EVL++ Sbjct: 450 ERLFAPPDVLEFIASRVSNSIRELEGALIRVTAFASLTRSSVELSLAEEVLRD 502 >gi|88705400|ref|ZP_01103111.1| Bacterial chromosomal replication initiator protein, DnaA [Congregibacter litoralis KT71] gi|88700490|gb|EAQ97598.1| Bacterial chromosomal replication initiator protein, DnaA [Congregibacter litoralis KT71] Length = 391 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 80/233 (34%), Gaps = 30/233 (12%) Query: 38 ISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW---------- 84 + + + + A+ + P + L G G GK+ L + Sbjct: 60 YTFSTFVEGKSNQLALAAANQVSENPGGAYNPLFLYGGVGLGKTHLMHAVGNALKLNKPD 119 Query: 85 ------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID---LLDFNDTQLFHI 129 +D ++ + + IA + +L++DI D + + FH Sbjct: 120 ARIVYLHSERFVADMVKALQLNAIADFKR--YYRSVDALLIDDIQFFAKKDRSQEEFFHT 177 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N++ + +++T +P L SR V + PD + +++ Sbjct: 178 FNALLEGGQQMILTCDRYPKEIDGLEERLKSRFGWGLTVAVEPPDLETRVAILMNKATQA 237 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ + A +I QR+ ++ E + ++ A I L E LK+ Sbjct: 238 RLNLPPDAAFFIAQRIRSNVRELEGALKRVIASANFTRRPIDVELVKESLKDL 290 >gi|255323604|ref|ZP_05364734.1| chromosomal replication initiator protein DnaA [Campylobacter showae RM3277] gi|255299318|gb|EET78605.1| chromosomal replication initiator protein DnaA [Campylobacter showae RM3277] Length = 436 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 40/232 (17%), Positives = 85/232 (36%), Gaps = 24/232 (10%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN--------- 82 + ++ +V + + A + ++ + + GP+G GK+ L Sbjct: 102 NPSYTFENFVVGDSNQFAFLSAKAVSEQLGKIYNPLFIYGPTGLGKTHLLQSVGNFCLNG 161 Query: 83 ---IWSDKSRSTRFSNIAKSLDSILIDTRK------PVLLEDIDLLDFND---TQLFHII 130 + S + + R+ +L++D+ L D + FH Sbjct: 162 GKMVICVTSEQFITDFTYNLNNHSMERFREKYRNCDVLLIDDVQFLGKTDKIQEEFFHTF 221 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N +H + ++MT+ P L +R + + I+ P+ D +I K + Sbjct: 222 NELHAKNGQIVMTSDRQPKLLKGFEDRLRTRFEWGIIADITPPELDTKIAIIKKKCEFDK 281 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 I++DK + YI M ++ E + ++ A IT A +L++ Sbjct: 282 IYLDKDVINYIATNMGDNIREIESAIINLNAYARLMRQEITLEFAKNILRDQ 333 >gi|73661310|ref|YP_300091.1| chromosomal replication initiation protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123747926|sp|Q4A180|DNAA_STAS1 RecName: Full=Chromosomal replication initiator protein DnaA gi|72493825|dbj|BAE17146.1| chromosomal replication initiator protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 455 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 88/233 (37%), Gaps = 28/233 (12%) Query: 40 RDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD-----KSRST 91 + ++ A + P+ + + G G GK+ L + + Sbjct: 124 FETFVIGPGNRFPHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVLDNNPDAK 183 Query: 92 RFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINSI 133 ++ + I + + +L++DI + + + FH N + Sbjct: 184 VIYTSSEKFTNEFIKSIRDNKTERFREKYRNIDVLLIDDIQFIQNKEQTQEEFFHTFNEL 243 Query: 134 HQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 HQ + +++++ P L D L SR + +V I+ PD + ++ K + + Sbjct: 244 HQANKQIVISSDRPPKEIA-KLEDRLRSRFEWGLIVDITPPDYETRMAILQKKIGEENLN 302 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 I + YI +++ ++ E + ++ + +G IT L AE LK+ Q Sbjct: 303 IPTEALTYIANQIQSNIRELEGALTRVLAFSKLQGQPITTELTAEALKDIIQA 355 >gi|238922433|ref|YP_002935946.1| chromosomal replication initiation protein [Eubacterium rectale ATCC 33656] gi|238874105|gb|ACR73812.1| chromosomal replication initiation protein [Eubacterium rectale ATCC 33656] Length = 453 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 44/281 (15%), Positives = 94/281 (33%), Gaps = 39/281 (13%) Query: 4 MKEDYSFFVPDK------QKNDQPKNKEEQLFFSFPR---CLGISRDDLLVHSAIEQAVR 54 ++ D F +PD+ + ND P+ E+Q + D +V + A Sbjct: 75 IEYDIQFILPDQAQSLKFKNNDTPQL-EQQTPVKGDHSNLNPNYTFDTFVVGNNNRFAHS 133 Query: 55 L---IDSWPSWPSRVVILVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILID 106 + P + + G G GK+ L + I + ++ + +I+ Sbjct: 134 ASLAVAESPGEAYNPLYIYGGPGLGKTHLMHSIGHFIIDQNPDTKVLYVTSEEFTNEVIE 193 Query: 107 TRK------------------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTAR 145 + + ++++DI + + + FH N++ +++T+ Sbjct: 194 SIRNGNSSAMTKFRDKYRTVDVLMIDDIQFIIGKESTQEEFFHTFNTLQTQGKQIILTSD 253 Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 P + SR + + I PD + ++ K ID + YI + Sbjct: 254 KPPKEMETLEERIRSRFEWGLMADIGTPDYETRMAILRKKAETDNFDIDDDILNYIASNI 313 Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 ++ E ++K+ IT +A L D Sbjct: 314 SSNIRELEGALNKLLAFHNLEHTHITMDIAERELSNIITPD 354 >gi|315223902|ref|ZP_07865748.1| DNA-directed DNA replication initiator protein [Capnocytophaga ochracea F0287] gi|314946131|gb|EFS98134.1| DNA-directed DNA replication initiator protein [Capnocytophaga ochracea F0287] Length = 473 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 42/266 (15%), Positives = 88/266 (33%), Gaps = 44/266 (16%) Query: 10 FFVPDKQK-NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-- 66 F +P ++ P+ Q + D+ + ++ A + + P Sbjct: 118 FVIPGIREITVDPQLNLHQ-----------NFDNFVEGASNRLARSAGMAVANKPGGTAF 166 Query: 67 --VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDT 107 + + G G GK+ LA+ ++K S Sbjct: 167 NPLFIFGGVGLGKTHLAHAIGVDIKEKYPKKKVLYVSAEKFTQQFISASTAKDKDKNTLN 226 Query: 108 --------RKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156 ++++DI L FHI N +HQ +++T+ PV Sbjct: 227 DFIHFYQLIDVLIVDDIQFLSGKVKTQDAFFHIFNHLHQNGKQVILTSDKAPVDLFDIEQ 286 Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216 L SR K ++ PD + K++ F + I + AY+ + + ++ E + Sbjct: 287 RLLSRFKWGLSAELQTPDYETRYKILENKFYNDGAEIGDDIIAYLAENIRTNVRELEGVS 346 Query: 217 DKMDNLALSRGMGITRSLAAEVLKET 242 + + A + LA ++ ++ Sbjct: 347 NSLIAQAAFNRKEYSIELAQSIIDKS 372 >gi|284925304|gb|ADC27656.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni IA3902] Length = 440 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 80/233 (34%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWP-----SRVVILVGPSGSGKSCLANIWSDKSR 89 + + +V + + A + + + GP+G GK+ L + S Sbjct: 102 NPSFTFESFVVGDSNKYAYGACKAIAHKDKLGKLYNPIFVYGPTGLGKTHLLQAVGNASL 161 Query: 90 STRFSNIAKSLDSILIDTRK------------------PVLLEDIDLLDFND---TQLFH 128 I + ++ + D +L++D+ L D + F Sbjct: 162 EMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEEFFF 221 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 I N I D ++MT+ P L SR + I+ P D +I K Sbjct: 222 IFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIRKKCEF 281 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 I + + YI + ++ E ++ ++ A G IT LA V+K+ Sbjct: 282 NDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKSVMKD 334 >gi|312193898|ref|YP_004013959.1| chromosomal replication initiator protein DnaA [Frankia sp. EuI1c] gi|311225234|gb|ADP78089.1| chromosomal replication initiator protein DnaA [Frankia sp. EuI1c] Length = 512 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 41/247 (16%), Positives = 93/247 (37%), Gaps = 26/247 (10%) Query: 22 KNKEEQLFFSFPRCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKS 78 ++ E + + ++ + A + P+ + + G SG GK+ Sbjct: 159 RDPEPRPSEPARLNPRYVFETFVIGDSNRFPHAASVAVAEAPAKAYNPLFIYGDSGLGKT 218 Query: 79 CLANIWSDKSRSTRFSNIAKS----------LDSILIDTRKP----------VLLEDIDL 118 L + ++ K ++SI D ++ +L++DI Sbjct: 219 HLLHAIGHYTKKLYPDAQVKYVSTEEFTNDFINSIRDDRQQAFQRRYRDIDVLLVDDIQF 278 Query: 119 LDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 L+ + + FH N +H + L++++ P L SR + + ++ PD Sbjct: 279 LENKERTQEEFFHTFNVLHDTEKQLVISSDRSPRQLSALEDRLRSRFEWGLITDVTPPDL 338 Query: 176 DFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235 + ++ K A ++ + + YI +ER++ E + ++ A + R+LA Sbjct: 339 ETRIAILSKKAAIERLPVPPDVLEYIATHIERNIRELEGALIRVAAFASLNKSHVDRTLA 398 Query: 236 AEVLKET 242 VL++ Sbjct: 399 EIVLRDL 405 >gi|153951168|ref|YP_001397274.1| chromosomal replication initiation protein [Campylobacter jejuni subsp. doylei 269.97] gi|166201873|sp|A7H194|DNAA_CAMJD RecName: Full=Chromosomal replication initiator protein DnaA gi|152938614|gb|ABS43355.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. doylei 269.97] Length = 440 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 80/233 (34%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWP-----SRVVILVGPSGSGKSCLANIWSDKSR 89 + + +V + + A + + + GP+G GK+ L + S Sbjct: 102 NPSFTFESFVVGDSNKYAYGACKAIAHKDKLGKLYNPIFVYGPTGLGKTHLLQAVGNASL 161 Query: 90 STRFSNIAKSLDSILIDTRK------------------PVLLEDIDLLDFND---TQLFH 128 I + ++ + D +L++D+ L D + F Sbjct: 162 EMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEEFFF 221 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 I N I D ++MT+ P L SR + I+ P D +I K Sbjct: 222 IFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIRKKCEF 281 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 I + + YI + ++ E ++ ++ A G IT LA V+K+ Sbjct: 282 NDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKSVMKD 334 >gi|86150555|ref|ZP_01068779.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni CF93-6] gi|85839007|gb|EAQ56272.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni CF93-6] Length = 440 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 80/233 (34%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWP-----SRVVILVGPSGSGKSCLANIWSDKSR 89 + + +V + + A + + + GP+G GK+ L + S Sbjct: 102 NPSFTFESFVVGDSNKYAYGACKAIAHKDKLGKLYNPIFVYGPTGLGKTHLLQAVGNASL 161 Query: 90 STRFSNIAKSLDSILIDTRK------------------PVLLEDIDLLDFND---TQLFH 128 I + ++ + D +L++D+ L D + F Sbjct: 162 EMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEEFFF 221 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 I N I D ++MT+ P L SR + I+ P D +I K Sbjct: 222 IFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIRKKCEF 281 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 I + + YI + ++ E ++ ++ A G IT LA V+K+ Sbjct: 282 NDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKSVMKD 334 >gi|88597701|ref|ZP_01100934.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni 84-25] gi|218561694|ref|YP_002343473.1| chromosomal replication initiation protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|14194686|sp|Q9PJB0|DNAA_CAMJE RecName: Full=Chromosomal replication initiator protein DnaA gi|88190005|gb|EAQ93981.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni 84-25] gi|112359400|emb|CAL34182.1| chromosomal replication initiator protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315930328|gb|EFV09416.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni 305] Length = 440 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 80/233 (34%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWP-----SRVVILVGPSGSGKSCLANIWSDKSR 89 + + +V + + A + + + GP+G GK+ L + S Sbjct: 102 NPSFTFESFVVGDSNKYAYGACKAIAHKDKLGKLYNPIFVYGPTGLGKTHLLQAVGNASL 161 Query: 90 STRFSNIAKSLDSILIDTRK------------------PVLLEDIDLLDFND---TQLFH 128 I + ++ + D +L++D+ L D + F Sbjct: 162 EMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEEFFF 221 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 I N I D ++MT+ P L SR + I+ P D +I K Sbjct: 222 IFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIRKKCEF 281 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 I + + YI + ++ E ++ ++ A G IT LA V+K+ Sbjct: 282 NDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKSVMKD 334 >gi|319440487|ref|ZP_07989643.1| chromosomal replication initiation protein [Corynebacterium variabile DSM 44702] Length = 564 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 38/240 (15%), Positives = 84/240 (35%), Gaps = 28/240 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRS- 90 + D + + + + P + + + G G GK+ L + +R Sbjct: 224 NPKYTFDTFVTGPSNQFPAAACRAVAENPGKAYNPLFIYGQPGLGKTHLLHAIGHYAREL 283 Query: 91 ------TRFSNIAKSLDSILIDTRKPVLLE-------DIDLLDFND-----------TQL 126 S+ + + I P+ L+ ++DLL +D + Sbjct: 284 KPEIRVRYVSSEEMTNEFINAIQGGPLALDQFKRNYRNLDLLIVDDIQFLQGKESTQEEF 343 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH N+++Q + +++++ P L +R + + PD + ++ K Sbjct: 344 FHTFNALYQANHQIVLSSDRPPSQLTTLEDRLRTRFEGGLTTDVKTPDLETRMAILAKKS 403 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + + + +I R E S+ E + ++ G IT + A V+K+ D Sbjct: 404 LLNGAAVPRDVLEFIASRNESSIRELEGALTRVVAYCSMTGEPITIAAAEVVVKDILPQD 463 >gi|93006678|ref|YP_581115.1| putative DnaA family protein [Psychrobacter cryohalolentis K5] gi|92394356|gb|ABE75631.1| regulatory inactivation of DnaA Hda protein [Psychrobacter cryohalolentis K5] Length = 270 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 40/234 (17%), Positives = 86/234 (36%), Gaps = 15/234 (6%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 E QL + S D + + + L G +GKS L + Sbjct: 3 EAQLSLNLDIKHDASLSDFA-GPGWMSIIDAVRQLHVGLIGQLYLFGSPATGKSHLLSAI 61 Query: 85 SDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFHIINS 132 + S I SL+ ++ ++ + ++D+++++ N LFH+IN Sbjct: 62 CESFIEMDKSAICLSLNELIHTDVNVLSSLENFSLIAIDDLEVIEQNSQWQEALFHLINR 121 Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL-PDDDFLEKVIVKMFADRQI 191 + LL A L DL +RL A K+ D E ++ + R Sbjct: 122 SREGQRQLLFAANKPASELPFQLRDLLTRLAQAPSFKVPTGHDFADREALLQSILRRRGW 181 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMD-NLALSRGMGITRSLAAEVLKETQQ 244 D+++ Y++ + ++++ + + I++++ A+ L+ + Sbjct: 182 QFDERITNYLLTEGPHRIGAMMEVLNYIQPMFSNLGRSNISKAVIADALRTIDE 235 >gi|295425825|ref|ZP_06818506.1| DNA-directed DNA replication initiator protein [Lactobacillus amylolyticus DSM 11664] gi|295064518|gb|EFG55445.1| DNA-directed DNA replication initiator protein [Lactobacillus amylolyticus DSM 11664] Length = 459 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 38/248 (15%), Positives = 89/248 (35%), Gaps = 26/248 (10%) Query: 21 PKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGK 77 P+ ++++ + D+ + + A + P + + G G GK Sbjct: 110 PQPRQDEFAKDLKLNDKYTFDNFVQGEGNKLAAGAALAVADSPGSFYNPLFIFGGVGLGK 169 Query: 78 SCLANIW-----SDKSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDID 117 + L +++ + +++ + I++ K +L++DI Sbjct: 170 THLMQAIGHQMLAERPNAKIVYIQSETFVNDFINSIKNKTQDQFREKYRTCDLLLVDDIQ 229 Query: 118 LLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 + + FH +++ ++MT+ P L SR V+I+ PD Sbjct: 230 FFAKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFTWGLQVEITPPD 289 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234 + ++ K + ID YI +++ ++ E + K++ A I +L Sbjct: 290 LETRIAILRKKAEADGLTIDDNTLDYIASQVDTNIRELEGALVKVEAHATIEKEDINVNL 349 Query: 235 AAEVLKET 242 A + L + Sbjct: 350 ARDALADL 357 >gi|325926219|ref|ZP_08187577.1| chromosomal replication initiator protein DnaA [Xanthomonas perforans 91-118] gi|325543401|gb|EGD14826.1| chromosomal replication initiator protein DnaA [Xanthomonas perforans 91-118] Length = 442 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 44/244 (18%), Positives = 86/244 (35%), Gaps = 27/244 (11%) Query: 29 FFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 F+ + + + + A++ ++L G +G GK+ L Sbjct: 101 PFAGNLDSHYTFANFVEGRSNQLGLAAAIQAAQKPGDRAHNPLLLYGSTGLGKTHLMFAA 160 Query: 85 SDKSRSTR-------------FSNIAKSLDSILIDT-------RKPVLLEDIDLLDFND- 123 + R FS + ++L +D +L++DI D Sbjct: 161 GNALRQANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQQIDALLIDDIQFFAGKDR 220 Query: 124 --TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 + FH N++ +++T +P P L SRL V I PD + + Sbjct: 221 TQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLSVAIDPPDFETRAAI 280 Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++ +R I +A I ++M ++ E ++ + A G IT A E L++ Sbjct: 281 VLAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARANFTGRSITVEFAQETLRD 340 Query: 242 TQQC 245 + Sbjct: 341 LLRA 344 >gi|325577775|ref|ZP_08148050.1| ribosomal subunit interface protein [Haemophilus parainfluenzae ATCC 33392] gi|325160520|gb|EGC72646.1| ribosomal subunit interface protein [Haemophilus parainfluenzae ATCC 33392] Length = 455 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 37/229 (16%), Positives = 90/229 (39%), Gaps = 27/229 (11%) Query: 40 RDDLLVHSAIEQAVRL---IDSWPSWP-SRVVILVGPSGSGKSCLAN-----IWSDKSRS 90 ++ + + + A + + P P + L G +G GK+ L + I ++K + Sbjct: 126 FENFVEGKSNQLARAVGQKLALAPGEPTANPFFLYGGTGLGKTHLLHAIGNGILANKPNA 185 Query: 91 TRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINS 132 A + ++ + +L++DI + + FHI N+ Sbjct: 186 RVLYIHANNFMQHMVKAMRDNKMDQFKKFYRSLDALLVDDIQFFAEKEKTQEEFFHIFNN 245 Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 + + +++T+ +P L SR I PD + +++K + + Sbjct: 246 LFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHHME 305 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + +++A +I QR+ ++ E ++++ + +G I + LK+ Sbjct: 306 LPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGHIDIDFVRDTLKD 354 >gi|313902784|ref|ZP_07836181.1| chromosomal replication initiator protein DnaA [Thermaerobacter subterraneus DSM 13965] gi|313466904|gb|EFR62421.1| chromosomal replication initiator protein DnaA [Thermaerobacter subterraneus DSM 13965] Length = 460 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 42/238 (17%), Positives = 90/238 (37%), Gaps = 25/238 (10%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD--- 86 P + + + S A + P+R + + G G GK+ L + Sbjct: 123 PLNPKYTFETFVTGSGNRLAHAAALAVAEAPARTYNPLFIYGGVGLGKTHLMQAVAHHVL 182 Query: 87 -KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLF 127 K S ++ + +I+ + +L++DI L + + F Sbjct: 183 RKHGSRVAYVSCETFTNEMINAIRDGKTLEFRNRYRNVDVLLVDDIQFLAGKESTQEEFF 242 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++H+ + +++++ P L SR + + I PD + ++ K Sbjct: 243 HTFNALHEANRQIVISSDRPPKEIPTLEERLRSRFEWGLISDIQPPDFETRVAILRKKAQ 302 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 ++ + + A+I +R++ ++ E + ++ A I LAAEVLK+ Sbjct: 303 LEKLRVPDDVIAFIAERIDTNIRELEGALIRLVAFASLTNHEIDLDLAAEVLKDILPP 360 >gi|237756304|ref|ZP_04584858.1| chromosomal replication initiator protein DnaA [Sulfurihydrogenibium yellowstonense SS-5] gi|237691531|gb|EEP60585.1| chromosomal replication initiator protein DnaA [Sulfurihydrogenibium yellowstonense SS-5] Length = 459 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 39/237 (16%), Positives = 90/237 (37%), Gaps = 26/237 (10%) Query: 32 FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----I 83 + D+L+V + + A + + ++ + + G G GK+ L + + Sbjct: 120 LSLNPKYTFDNLIVGNNNKVAFQACLAVTENLGKIYNPLFIYGDVGLGKTHLLHGTAYHV 179 Query: 84 WSDKSRSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLLDFNDT---Q 125 + S + A + S L +L++DI L + + Sbjct: 180 LAKNSTAKIIYTTADTFASELFSYLEKGMILEFRKKYREVDLLLIDDIQFLVGKERTQIE 239 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 +HI N ++ +++++ P L SR + +V+I+ PD + + +K Sbjct: 240 FYHIFNVLYSLGKQIILSSDQPPSKLNGIEKRLISRFSSGLIVEITKPDLETKINITLKK 299 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + + +I + + S+ E + ++ + G IT +A VLK+ Sbjct: 300 MKELNVEFSRDVVLFIAKTVNTSVRELEGSIKRLKAYSEIMGRPITLDVARTVLKDV 356 >gi|256820765|ref|YP_003142044.1| chromosomal replication initiation protein [Capnocytophaga ochracea DSM 7271] gi|256582348|gb|ACU93483.1| chromosomal replication initiator protein DnaA [Capnocytophaga ochracea DSM 7271] Length = 473 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 42/266 (15%), Positives = 89/266 (33%), Gaps = 44/266 (16%) Query: 10 FFVPDKQK-NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-- 66 F +P ++ P+ Q + D+ + ++ A + + P Sbjct: 118 FVIPGIREITVDPQLNLHQ-----------NFDNFVEGASNRLARSAGMAVANKPGGTAF 166 Query: 67 --VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDT 107 + + G G GK+ LA+ ++K S Sbjct: 167 NPLFIFGGVGLGKTHLAHAIGVDIKEKYPKKKVLYVSAEKFTQQFISASTAKDKDKNTLN 226 Query: 108 --------RKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156 ++++DI L FHI N +HQ +++T+ PV Sbjct: 227 DFIHFYQLIDVLIVDDIQFLSGKVKTQDAFFHIFNHLHQNGKQVILTSDKAPVDLFDIEQ 286 Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216 L SR K ++ PD + K++ F + I + + AY+ + + ++ E + Sbjct: 287 RLLSRFKWGLSAELQTPDYETRYKILENKFYNDGAEIGEDIIAYLAENIRTNVRELEGVS 346 Query: 217 DKMDNLALSRGMGITRSLAAEVLKET 242 + + A + LA ++ ++ Sbjct: 347 NSLIAQAAFNRKEYSIELAQSIIDKS 372 >gi|227494189|ref|ZP_03924505.1| DNA-directed DNA replication initiator protein [Actinomyces coleocanis DSM 15436] gi|226831923|gb|EEH64306.1| DNA-directed DNA replication initiator protein [Actinomyces coleocanis DSM 15436] Length = 464 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 43/239 (17%), Positives = 83/239 (34%), Gaps = 26/239 (10%) Query: 29 FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWS 85 F D ++ S+ A P +V + + G SG GK+ L Sbjct: 117 AFDSRLNPKYVFDTFVIGSSNRFANAAAAQTAEQPGKVYNPLFIYGDSGLGKTHLIQAIG 176 Query: 86 --DKSRSTRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFND-- 123 + S + D + L++DI + + Sbjct: 177 NYALELAPHLKVRYVSSEEFTNDFINSIRTGRAEDFQRRYREIDILLIDDIQFIQGKEQT 236 Query: 124 -TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 + FH N+++ + +++T+ P L SR + V I P+ + ++ Sbjct: 237 VEEFFHTFNTLYNAEKQVIITSDVPPKMLSGLEDRLRSRFEMGLTVDIKPPELETRIAIL 296 Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 K + +D ++ YI R+ ++ E + ++ A +TRSLA VLK+ Sbjct: 297 RKKTIAENLDVDNEVLEYIASRISSNIRELEGALIRVTAYANLTKQEVTRSLAEVVLKD 355 >gi|213962527|ref|ZP_03390789.1| chromosomal replication initiator protein DnaA [Capnocytophaga sputigena Capno] gi|213954853|gb|EEB66173.1| chromosomal replication initiator protein DnaA [Capnocytophaga sputigena Capno] Length = 473 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 42/266 (15%), Positives = 89/266 (33%), Gaps = 44/266 (16%) Query: 10 FFVPDKQK-NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-- 66 F +P ++ P+ Q + D+ + ++ A + + P Sbjct: 118 FVIPGIREITVDPQLNLHQ-----------NFDNFVEGASNRLARSAGMAVANKPGGTAF 166 Query: 67 --VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDT 107 + + G G GK+ LA+ ++K S Sbjct: 167 NPLFIFGGVGLGKTHLAHAIGVDIKEKYPKKKVLYVSAEKFTQQFISASTAKDKDKNTLN 226 Query: 108 --------RKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156 ++++DI L FHI N +HQ +++T+ PV Sbjct: 227 DFIHFYQLIDVLIVDDIQFLSGKVKTQDAFFHIFNHLHQNGKQVILTSDKAPVDLFDIEQ 286 Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216 L SR K ++ PD + K++ F + I + + AY+ + + ++ E + Sbjct: 287 RLLSRFKWGLSAELQTPDYETRYKILENKFYNDGAEIGEDIIAYLAENIRTNVRELEGVS 346 Query: 217 DKMDNLALSRGMGITRSLAAEVLKET 242 + + A + LA ++ ++ Sbjct: 347 NSLIAQAAFNRKEYSIELAQSIIDKS 372 >gi|320331110|gb|EFW87081.1| chromosomal replication initiation protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330881908|gb|EGH16057.1| chromosomal replication initiation protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 511 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 39/262 (14%), Positives = 95/262 (36%), Gaps = 38/262 (14%) Query: 15 KQKNDQPKNKEEQLFFSFPRCLGISR----DDLLVHSAIEQAVRLIDSWPSWPSRV---- 66 +Q + + + Q+ + ++R ++ + + + A +W + Sbjct: 153 QQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAA--AWQVADNPKHGYN 210 Query: 67 -VILVGPSGSGKSCLANIW----------------------SDKSRSTRFSNIAKSLDSI 103 + L G G GK+ L + +D ++ + + I + Sbjct: 211 PLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKR-- 268 Query: 104 LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 + +L++DI + + FH N++ + +++T+ +P L S Sbjct: 269 FYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKS 328 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 R V + P+ + +++K ++ + A +I QR+ ++ E + ++ Sbjct: 329 RFGWGLTVAVEPPELETRVAILMKKADQAKVDLPHDAAFFIAQRIRSNVRELEGALKRVI 388 Query: 221 NLALSRGMGITRSLAAEVLKET 242 + G IT L E LK+ Sbjct: 389 AHSHFMGRDITIELIRESLKDL 410 >gi|104779317|ref|YP_605815.1| chromosomal replication initiation protein [Pseudomonas entomophila L48] gi|123255134|sp|Q1I2G4|DNAA_PSEE4 RecName: Full=Chromosomal replication initiator protein DnaA gi|95108304|emb|CAK12998.1| Chromosomal replication initiator protein DnaA [Pseudomonas entomophila L48] Length = 508 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 36/235 (15%), Positives = 84/235 (35%), Gaps = 34/235 (14%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIW-------- 84 + + + + + A +W + + L G G GK+ L + Sbjct: 177 FTFETFVEGKSNQLARAA--AWQVADNPKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKN 234 Query: 85 --------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLF 127 +D ++ + + I + + +L++DI + + F Sbjct: 235 PNAKVVYLHSERFVADMVKALQLNAINEFKR--FYRSVDALLIDDIQFFARKERSQEEFF 292 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + +++T+ +P L SR V + P+ + +++K Sbjct: 293 HTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAD 352 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ + A +I QR+ ++ E + ++ + G IT L E LK+ Sbjct: 353 QAKVELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDL 407 >gi|320449107|ref|YP_004201203.1| chromosomal replication initiator protein DnaA [Thermus scotoductus SA-01] gi|320149276|gb|ADW20654.1| chromosomal replication initiator protein DnaA [Thermus scotoductus SA-01] Length = 447 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 95/235 (40%), Gaps = 30/235 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91 + ++ +V A + P R + + G G GK+ L + S + Sbjct: 114 NPKYTFENFVVGPNNSMAHAAAVAVAESPGRAYNPLFIYGGVGLGKTHLMHA-VGHSVAK 172 Query: 92 RFSNI------AKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLF 127 RF ++ ++ + LI+ + +L++DI + + + F Sbjct: 173 RFPHLKIEYVSTETFTNELINAIREDRMTEFRERYRSVDLLLVDDIQFIAGKERTQEEFF 232 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++++ +++++ P L SR + + I PD + ++ Sbjct: 233 HTFNALYEAHKQIILSSDRPPKDILTLEARLRSRFEWGLITDIQPPDLETRIAILKMNAE 292 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAE-KLVDKMDNLALSRGMGITRSLAAEVLKE 241 R + I +++ YI +++ ++ E L+ + +L G+ +TR++AA+ L + Sbjct: 293 QRGLRISEEVLEYIARQVTSNIRELEGALMRTIAYASL-NGVELTRAVAAKALSD 346 >gi|326383909|ref|ZP_08205593.1| chromosomal replication initiation protein [Gordonia neofelifaecis NRRL B-59395] gi|326197368|gb|EGD54558.1| chromosomal replication initiation protein [Gordonia neofelifaecis NRRL B-59395] Length = 539 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 41/256 (16%), Positives = 94/256 (36%), Gaps = 34/256 (13%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILV 70 ++++ P N L + D ++ ++ A + P+R + + Sbjct: 186 EQRETSAPDNGTTSL------HPKYTFDTFVIGASNRFAHASAVAVAENPARAYNPMFIW 239 Query: 71 GPSGSGKSCLANIWSDKSRSTRFSNI-----------AKSLDSILIDTRKP--------- 110 G SG GK+ L + + F + ++S+ D R Sbjct: 240 GESGLGKTHLLHA-AGHYSQRLFPGMRVKYVSTEEFTNDFINSLRDDRRVAFKRRYRDID 298 Query: 111 -VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 +L++DI L+ + + FH N++H + +++++ P L +R + Sbjct: 299 MLLIDDIQFLEGKEGIQEEFFHTFNTLHNANKQIVVSSDRPPKQLATLEDRLRTRFEWGL 358 Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 + + PD + ++ K ++ + I ++ER++ E + ++ A Sbjct: 359 ITDVQPPDLETRIAILRKKAQMDKLAAPDDVLELIASKIERNIRELEGALIRVTAFASLN 418 Query: 227 GMGITRSLAAEVLKET 242 + +LA VLK Sbjct: 419 NTELDTTLAEVVLKAL 434 >gi|126724505|ref|ZP_01740348.1| chromosomal replication initiation protein [Rhodobacterales bacterium HTCC2150] gi|126705669|gb|EBA04759.1| chromosomal replication initiation protein [Rhodobacterales bacterium HTCC2150] Length = 460 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 35/244 (14%), Positives = 81/244 (33%), Gaps = 31/244 (12%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLAN--IWSDK 87 P D +V E A + L G G GK+ L + W + Sbjct: 119 PLDARFQFDSFVVGKPNELAHAAARRVAEGGPVTFNPLFLYGGVGLGKTHLMHSIAWQLQ 178 Query: 88 SRSTRFSNIAKSLDSI------------------LIDTRKPVLLEDIDLLDFND---TQL 126 +R+ + S + + + ++++D+ + D + Sbjct: 179 TRTPNLKVVYLSAEQFMYRFVQSLRDRSTMDFKQIFRSVDVLMVDDVQFIAGKDSTQDEF 238 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH N++ ++++ P + SRL++ VV + D + ++ + Sbjct: 239 FHTFNALVDQGRQIIISGDRSPSEMNGLDDRIQSRLQSGLVVDLHPTDYELRLGILQQKV 298 Query: 187 ADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + + I + ++ R+ ++ E + ++ A G IT L + L + Sbjct: 299 ELYKSQYSDLVIAPGVLEFLAHRISTNVRVLEGALTRLFAFASLVGREITMDLTQDCLAD 358 Query: 242 TQQC 245 + Sbjct: 359 ILRS 362 >gi|84497194|ref|ZP_00996016.1| chromosomal replication initiator protein [Janibacter sp. HTCC2649] gi|84382082|gb|EAP97964.1| chromosomal replication initiator protein [Janibacter sp. HTCC2649] Length = 516 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 42/256 (16%), Positives = 93/256 (36%), Gaps = 27/256 (10%) Query: 13 PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVIL 69 P + EQ+ + + D ++ ++ A + P+ + + Sbjct: 157 PGALRPRPGATVPEQVELT-RLNPKYTFDTFVIGASNRFANAAALAVAETPAKAYNPLFI 215 Query: 70 VGPSGSGKSCLANIWSDKSRS------TRFSNIAKSLDSILIDTRK-------------- 109 G SG GK+ L + +R+ R+ N + + + R Sbjct: 216 YGESGLGKTHLLHAIGHYARNLYPHVKVRYVNSEEFTNDFINSIRDDKAANFQRRYRDVD 275 Query: 110 PVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 +L++DI L + FH N++H + +++T+ P + SR + Sbjct: 276 VLLIDDIQFLQGKVQTQEEFFHTFNTLHNANKQVVITSDLPPKLLSGFEERMRSRFEWGL 335 Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 + + PD + ++ K A ++ + + +I R+ ++ E + ++ A Sbjct: 336 MTDVQPPDLETRIAILRKKAAQEKLSVPDDVLEFIASRISTNIRELEGALIRVTAFASLN 395 Query: 227 GMGITRSLAAEVLKET 242 + SLA VLK+ Sbjct: 396 RQPVDISLAEIVLKDL 411 >gi|21240775|ref|NP_640357.1| chromosomal replication initiation protein [Xanthomonas axonopodis pv. citri str. 306] gi|38257669|sp|Q8PRG2|DNAA_XANAC RecName: Full=Chromosomal replication initiator protein DnaA gi|21106039|gb|AAM34893.1| chromosomal replication initiator [Xanthomonas axonopodis pv. citri str. 306] Length = 442 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 44/244 (18%), Positives = 86/244 (35%), Gaps = 27/244 (11%) Query: 29 FFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 F+ + + + + A++ ++L G +G GK+ L Sbjct: 101 PFAGNLDSHYTFANFVEGRSNQLGLAAAIQAAQKPGDRAHNPLLLYGSTGLGKTHLMFAA 160 Query: 85 SDKSRSTR-------------FSNIAKSLDSILIDT-------RKPVLLEDIDLLDFND- 123 + R FS + ++L +D +L++DI D Sbjct: 161 GNALRQANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQQIDALLIDDIQFFAGKDR 220 Query: 124 --TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 + FH N++ +++T +P P L SRL V I PD + + Sbjct: 221 TQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLSVAIDPPDFETRAAI 280 Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++ +R I +A I ++M ++ E ++ + A G IT A E L++ Sbjct: 281 VLAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARANFTGRSITVEFAQETLRD 340 Query: 242 TQQC 245 + Sbjct: 341 LLRA 344 >gi|294627438|ref|ZP_06706022.1| chromosomal replication initiation protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294665122|ref|ZP_06730425.1| chromosomal replication initiation protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292598259|gb|EFF42412.1| chromosomal replication initiation protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292605123|gb|EFF48471.1| chromosomal replication initiation protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 442 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 44/244 (18%), Positives = 86/244 (35%), Gaps = 27/244 (11%) Query: 29 FFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 F+ + + + + A++ ++L G +G GK+ L Sbjct: 101 PFAGNLDSHYTFANFVEGRSNQLGLAAAIQAAQKPGDRAHNPLLLYGSTGLGKTHLMFAA 160 Query: 85 SDKSRSTR-------------FSNIAKSLDSILIDT-------RKPVLLEDIDLLDFND- 123 + R FS + ++L +D +L++DI D Sbjct: 161 GNALRQANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQQIDALLIDDIQFFAGKDR 220 Query: 124 --TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 + FH N++ +++T +P P L SRL V I PD + + Sbjct: 221 TQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLSVAIDPPDFETRAAI 280 Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++ +R I +A I ++M ++ E ++ + A G IT A E L++ Sbjct: 281 VLAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARANFTGRSITVEFAQETLRD 340 Query: 242 TQQC 245 + Sbjct: 341 LLRA 344 >gi|270289892|ref|ZP_06196118.1| chromosomal replication initiator protein DnaA [Pediococcus acidilactici 7_4] gi|304385855|ref|ZP_07368199.1| chromosomal replication initiator protein DnaA [Pediococcus acidilactici DSM 20284] gi|270281429|gb|EFA27261.1| chromosomal replication initiator protein DnaA [Pediococcus acidilactici 7_4] gi|304328359|gb|EFL95581.1| chromosomal replication initiator protein DnaA [Pediococcus acidilactici DSM 20284] Length = 446 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 41/256 (16%), Positives = 92/256 (35%), Gaps = 29/256 (11%) Query: 16 QKNDQPKNKEEQLFF---SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVIL 69 Q+ +P++ ++ F + D ++ S + A + P + Sbjct: 89 QQAQKPQSTDKSSSFSTEDTQLNSRYTFDTFVIGSGNQMAHAAAMAVSDEPGVLYNPLFF 148 Query: 70 VGPSGSGKSCLANIWSDK-------SRSTRFSNIAKSLDSILIDTRK------------- 109 G G GK+ L + + +R ++ A + D I + Sbjct: 149 YGGVGLGKTHLMHAIGHQLLENDPQTRVKYVTSEAFTNDFINSIQKNTTEEFHEKYRNVD 208 Query: 110 PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 +L++D+ + + FH +++ +++T+ P L SR K Sbjct: 209 LLLVDDVQFFADKEATQEEFFHTFEALYNAQKQIVLTSDRLPNEIPKLQERLVSRFKWGL 268 Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 V I+ PD + ++ + + I + +I R++ ++ E + ++ A + Sbjct: 269 SVDITPPDLETRIAILREKAQADNVEIPDETLDFIANRIDSNIRELEGAMARIQAYAQLQ 328 Query: 227 GMGITRSLAAEVLKET 242 IT LAA+ L+ Sbjct: 329 NAAITTDLAADALRSL 344 >gi|317120850|ref|YP_004100853.1| chromosomal replication initiator protein DnaA [Thermaerobacter marianensis DSM 12885] gi|315590830|gb|ADU50126.1| chromosomal replication initiator protein DnaA [Thermaerobacter marianensis DSM 12885] Length = 459 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 42/238 (17%), Positives = 89/238 (37%), Gaps = 25/238 (10%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD--- 86 P + D + S A + P+R + + G G GK+ L + Sbjct: 122 PLNPKYTFDTFVTGSGNRLAHAAALAVAEAPARTYNPLFIYGGVGLGKTHLMQAVAHHVL 181 Query: 87 -KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLF 127 K S ++ + +I+ + +L++DI L + + F Sbjct: 182 RKHGSRVAYVSCETFTNEMINAIRDGKTLEFRNRYRNVDVLLVDDIQFLAGKESTQEEFF 241 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++H+ + +++++ P L SR + + I PD + ++ K Sbjct: 242 HTFNALHEANRQIVISSDRPPKEIPTLEERLRSRFEWGLISDIQPPDFETRVAILRKKAQ 301 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 ++ + + A+I +R++ ++ E + ++ A I LA EVLK+ Sbjct: 302 LEKLRVPDDVIAFIAERIDTNIRELEGALIRLVAFASLTNHHIDLDLAQEVLKDILPP 359 >gi|298243778|ref|ZP_06967585.1| chromosomal replication initiator protein DnaA [Ktedonobacter racemifer DSM 44963] gi|297556832|gb|EFH90696.1| chromosomal replication initiator protein DnaA [Ktedonobacter racemifer DSM 44963] Length = 514 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 35/229 (15%), Positives = 80/229 (34%), Gaps = 24/229 (10%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91 S D +V ++ A + P + L G G GK+ L + + T Sbjct: 180 NPRYSFDTFIVGNSNRLAHAASLAVAEAPGESYNPLFLYGGVGLGKTHLLHAIGQQGVQT 239 Query: 92 RFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDF---NDTQLFHII 130 + + S + + + L++DI + + + FH Sbjct: 240 GLAVLYVSSEQFTNEIINAIRYRTTEEFRAKYRSVDILLVDDIQFIAGKESTEEEFFHTF 299 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 NS+H+ +++ + P + L SR + V I PD + ++ Sbjct: 300 NSLHEMSKQIVICSDRPPKAIASLEERLRSRFEWGLVADIQPPDLETRMAILRVKADALH 359 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + ++ +YI R++ ++ E ++++ + +T +A + Sbjct: 360 YRVPDEIISYIAGRVQTNIRELEGCLNRLMAYQQLHRVDLTLDVARAAM 408 >gi|281421238|ref|ZP_06252237.1| bacterial DnaA protein helix-turn-helix protein [Prevotella copri DSM 18205] gi|281404773|gb|EFB35453.1| bacterial DnaA protein helix-turn-helix protein [Prevotella copri DSM 18205] Length = 471 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 34/240 (14%), Positives = 79/240 (32%), Gaps = 29/240 (12%) Query: 35 CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCL---------- 80 ++ ++ + + + + + + + + GPSGSGK+ L Sbjct: 133 DPKLTFNNYMEGDSNKLPRSVGLSIAEHPNTTQFNPMFIYGPSGSGKTHLVNAIGLKAKQ 192 Query: 81 -----------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL--- 126 A ++ + N + + ++++DI L Sbjct: 193 MYPQKRVLYVSARLFQTQYTDAVLHNASNDF-INFYQSIDMLIVDDIQEWAGKAKTLNTF 251 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FHI N + + +++ PV L +R V ++ P+ ++ Sbjct: 252 FHIFNHLFRNGKRIILACDRPPVELKDMPDRLLTRFSCGLVCELEKPNIQLCVDILSNKI 311 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + I + ++I Q S+ + V+ + ++ I LA V+K + D Sbjct: 312 RRDGLKIPADVISFIAQTCNGSVRDLQGAVNGLLAYSIVYNSSIDIRLAERVIKRAVKVD 371 >gi|325915701|ref|ZP_08178006.1| chromosomal replication initiator protein DnaA [Xanthomonas vesicatoria ATCC 35937] gi|325538118|gb|EGD09809.1| chromosomal replication initiator protein DnaA [Xanthomonas vesicatoria ATCC 35937] Length = 442 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 44/244 (18%), Positives = 86/244 (35%), Gaps = 27/244 (11%) Query: 29 FFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 F+ + + + + A++ ++L G +G GK+ L Sbjct: 101 PFAGNLDSHYTFANFVEGRSNQLGLAAAIQAAQKPGDRAHNPLLLYGSTGLGKTHLMFAA 160 Query: 85 SDKSRSTR-------------FSNIAKSLDSILIDT-------RKPVLLEDIDLLDFND- 123 + R FS + ++L +D +L++DI D Sbjct: 161 GNALRQANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQQIDALLIDDIQFFAGKDR 220 Query: 124 --TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 + FH N++ +++T +P P L SRL V I PD + + Sbjct: 221 TQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLSVAIDPPDFETRAAI 280 Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++ +R I +A I ++M ++ E ++ + A G IT A E L++ Sbjct: 281 VLAKARERGADIPDDVAFLIAKKMRSNVRDLEGALNTLVARANFTGRSITVEFAQETLRD 340 Query: 242 TQQC 245 + Sbjct: 341 LLRA 344 >gi|307746965|gb|ADN90235.1| Chromosomal replication initiator protein dnaA [Campylobacter jejuni subsp. jejuni M1] Length = 440 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 44/234 (18%), Positives = 81/234 (34%), Gaps = 28/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLI------DSWPSWPSRVVILVGPSGSGKSCLANIWSDKS 88 + + +V + + A D + + GP+G GK+ L + S Sbjct: 102 NPSFTFESFVVGDSNKYAYGACKAIIHKDKLGK-LYNPIFVYGPTGLGKTHLLQAVGNAS 160 Query: 89 RSTRFSNIAKSLDSILIDTRK------------------PVLLEDIDLLDFND---TQLF 127 I + ++ + D +L++D+ L D + F Sbjct: 161 LEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEEFF 220 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 I N I D ++MT+ P + L SR + I+ P D +I K Sbjct: 221 FIFNEIKNNDGQIIMTSDNPPNMLKGIIERLKSRFAHGIIADITPPQLDTKIAIIRKKCE 280 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 I + + YI + ++ E ++ ++ A G IT LA V+K+ Sbjct: 281 FNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKSVMKD 334 >gi|195973852|gb|ACG63491.1| chromosomal replication initiator protein DnaA [Francisella noatunensis subsp. orientalis] gi|225624833|gb|ACN96551.1| DnaA [Francisella noatunensis subsp. orientalis] Length = 434 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 37/243 (15%), Positives = 88/243 (36%), Gaps = 26/243 (10%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN 82 ++ F P D +V A + A P ++ + + G SG GK+ L Sbjct: 116 QEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLHNPLFIYGGSGLGKTHLMQ 175 Query: 83 IWSDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFN 122 + +R + +S + + +L++DI + Sbjct: 176 AIGNHAREVNPNARIIYTNSEQFIKDYVNSIRLQDQDEFQRVYRSADILLIDDIQFIAGK 235 Query: 123 D---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179 + + FH N++++ +++T+ +P L SR V + + D + Sbjct: 236 EGTAQEFFHTFNALYENGKQIILTSDKYPNEIEGLEERLVSRFGYGLTVSVDMLDLETRI 295 Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 +++K D + + AA+I + + ++ E ++++ + T +A L Sbjct: 296 AILLKKAHDLGQKLPNETAAFIAENVRTNVRELEGALNRVLTTSKFNHKDPTIEVAQACL 355 Query: 240 KET 242 ++ Sbjct: 356 RDV 358 >gi|291529189|emb|CBK94775.1| chromosomal replication initiator protein DnaA [Eubacterium rectale M104/1] Length = 453 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 43/281 (15%), Positives = 93/281 (33%), Gaps = 39/281 (13%) Query: 4 MKEDYSFFVPDK------QKNDQPKNKEEQLFFSFPR---CLGISRDDLLVHSAIEQAVR 54 ++ D F +PD+ + ND P+ + Q + D +V + A Sbjct: 75 IEYDIQFILPDQAQSLKFKNNDTPQLEP-QTPVKGDHSNLNPNYTFDTFVVGNNNRFAHS 133 Query: 55 L---IDSWPSWPSRVVILVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILID 106 + P + + G G GK+ L + I + ++ + +I+ Sbjct: 134 ASLAVAESPGEAYNPLYIYGGPGLGKTHLMHSIGHFIIDQNPDTKVLYVTSEEFTNEVIE 193 Query: 107 TRK------------------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTAR 145 + + ++++DI + + + FH N++ +++T+ Sbjct: 194 SIRNGNSSAMTKFRDKYRTVDVLMIDDIQFIIGKESTQEEFFHTFNTLQTQGKQIILTSD 253 Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 P + SR + + I PD + ++ K ID + YI + Sbjct: 254 KPPKEMETLEERIRSRFEWGLMADIGTPDYETRMAILRKKAETDNFDIDDDILNYIASNI 313 Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 ++ E ++K+ IT +A L D Sbjct: 314 SSNIRELEGALNKLLAFHNLEHTHITMDIAERELSNIITPD 354 >gi|291526546|emb|CBK92133.1| chromosomal replication initiator protein DnaA [Eubacterium rectale DSM 17629] Length = 453 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 43/281 (15%), Positives = 93/281 (33%), Gaps = 39/281 (13%) Query: 4 MKEDYSFFVPDK------QKNDQPKNKEEQLFFSFPR---CLGISRDDLLVHSAIEQAVR 54 ++ D F +PD+ + ND P+ + Q + D +V + A Sbjct: 75 IEYDIQFILPDQAQSLKFKNNDTPQLEP-QTPVKGDHSNLNPNYTFDTFVVGNNNRFAHS 133 Query: 55 L---IDSWPSWPSRVVILVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILID 106 + P + + G G GK+ L + I + ++ + +I+ Sbjct: 134 ASLAVAESPGEAYNPLYIYGGPGLGKTHLMHSIGHFIIDQNPDTKVLYVTSEEFTNEVIE 193 Query: 107 TRK------------------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTAR 145 + + ++++DI + + + FH N++ +++T+ Sbjct: 194 SIRNGNSSAMTKFRDKYRTVDVLMIDDIQFIIGKESTQEEFFHTFNTLQTQGKQIILTSD 253 Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 P + SR + + I PD + ++ K ID + YI + Sbjct: 254 KPPKEMETLEERIRSRFEWGLMADIGTPDYETRMAILRKKAETDNFDIDDDILNYIASNI 313 Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 ++ E ++K+ IT +A L D Sbjct: 314 SSNIRELEGALNKLLAFHNLEHTHITMDIAERELSNIITPD 354 >gi|310657317|ref|YP_003935038.1| chromosomal replication initiator protein DnaA [Clostridium sticklandii DSM 519] gi|308824095|emb|CBH20133.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Clostridium sticklandii] Length = 440 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 40/241 (16%), Positives = 87/241 (36%), Gaps = 34/241 (14%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91 + D ++ ++ A + P++ + + G G GK+ L + Sbjct: 105 NPKYTFDTFVIGNSNRFAHAACVAVAESPAKAYNPLFIYGGVGLGKTHLMHAI----GHY 160 Query: 92 RFSNIAKS--------------LDSILIDTRKP----------VLLEDIDLLDFND---T 124 SN S ++SI D + +L++DI + + Sbjct: 161 IVSNNKNSKILYLSSETFTNELINSIKDDKNEAFRNKYRNVDVILVDDIQFIAGKERTQE 220 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + FH N++H + +++++ P L SR + + I PD + ++ K Sbjct: 221 EFFHTFNALHDANKQIIISSDRTPKEIPTLEDRLRSRFEMGLIADIQPPDFETRIAILRK 280 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 I ++ +I + ++ ++ E + ++ + IT LA E LK+ Q Sbjct: 281 KAQVENRDIPNEVMVHIAKNIKSNIRELEGALVRVIAYSDLTKEEITYELACEALKDIFQ 340 Query: 245 C 245 Sbjct: 341 S 341 >gi|315928462|gb|EFV07774.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 440 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 80/233 (34%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWP-----SRVVILVGPSGSGKSCLANIWSDKSR 89 + + +V + + A + + + GP+G GK+ L + S Sbjct: 102 NPSFTFESFVVGDSNKYAYGACKAITHKDKLGKLYNPIFVYGPTGLGKTHLLQAVGNASL 161 Query: 90 STRFSNIAKSLDSILIDTRK------------------PVLLEDIDLLDFND---TQLFH 128 I + ++ + D +L++D+ L D + F Sbjct: 162 EMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEEFFF 221 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 I N I D ++MT+ P L SR + I+ P D +I K Sbjct: 222 IFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIRKKCEF 281 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 I + + YI + ++ E ++ ++ A G IT LA V+K+ Sbjct: 282 NDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKSVMKD 334 >gi|148926820|ref|ZP_01810499.1| chromosomal replication initiator protein [Campylobacter jejuni subsp. jejuni CG8486] gi|145844545|gb|EDK21652.1| chromosomal replication initiator protein [Campylobacter jejuni subsp. jejuni CG8486] Length = 383 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 80/233 (34%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWP-----SRVVILVGPSGSGKSCLANIWSDKSR 89 + + +V + + A + + + GP+G GK+ L + S Sbjct: 102 NPSFTFESFVVGDSNKYAYGACKAITHKDKLGKLYNPIFVYGPTGLGKTHLLQAVGNASL 161 Query: 90 STRFSNIAKSLDSILIDTRK------------------PVLLEDIDLLDFND---TQLFH 128 I + ++ + D +L++D+ L D + F Sbjct: 162 EMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEEFFF 221 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 I N I D ++MT+ P L SR + I+ P D +I K Sbjct: 222 IFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIRKKCEF 281 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 I + + YI + ++ E ++ ++ A G IT LA V+K+ Sbjct: 282 NDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKSVMKD 334 >gi|301154703|emb|CBW14166.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Haemophilus parainfluenzae T3T1] Length = 455 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 37/229 (16%), Positives = 90/229 (39%), Gaps = 27/229 (11%) Query: 40 RDDLLVHSAIEQAVRL---IDSWPSWP-SRVVILVGPSGSGKSCLAN-----IWSDKSRS 90 ++ + + + A + + P P + L G +G GK+ L + I ++K + Sbjct: 126 FENFVEGKSNQLARAVGQKLALAPGEPTANPFFLYGGTGLGKTHLLHAIGNGILANKPNA 185 Query: 91 TRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINS 132 A + ++ + +L++DI + + FHI N+ Sbjct: 186 RVLYIHANNFMQHMVKAMRDNKMDQFKKFYRSLDALLVDDIQFFAEKEKTQEEFFHIFNN 245 Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 + + +++T+ +P L SR I PD + +++K + + Sbjct: 246 LFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAEEHHME 305 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + +++A +I QR+ ++ E ++++ + +G I + LK+ Sbjct: 306 LPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGHIDIDFVRDTLKD 354 >gi|283953664|ref|ZP_06371195.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni 414] gi|283794705|gb|EFC33443.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni 414] Length = 432 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 44/234 (18%), Positives = 80/234 (34%), Gaps = 28/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLI------DSWPSWPSRVVILVGPSGSGKSCLANIWSDKS 88 + + +V + + A D + + GP+G GK+ L + S Sbjct: 102 NPSFTFESFVVGDSNKYAYGACKAIIHKDKLGK-LYNPIFVYGPTGLGKTHLLQAVGNAS 160 Query: 89 RSTRFSNIAKSLDSILIDTRK------------------PVLLEDIDLLDFND---TQLF 127 I + ++ + D +L++D+ L D + F Sbjct: 161 LEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEEFF 220 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 I N I D ++MT+ P L SR + I+ P D +I K Sbjct: 221 FIFNEIKNNDGQIIMTSDNPPNILKGITERLKSRFAHGIIADITPPQLDTKIAIIRKKCE 280 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 I + + YI + ++ E ++ ++ A G IT LA V+K+ Sbjct: 281 LNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKSVMKD 334 >gi|257455388|ref|ZP_05620623.1| regulatory inactivation of DnaA Hda protein [Enhydrobacter aerosaccus SK60] gi|257447350|gb|EEV22358.1| regulatory inactivation of DnaA Hda protein [Enhydrobacter aerosaccus SK60] Length = 261 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 39/213 (18%), Positives = 80/213 (37%), Gaps = 22/213 (10%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVV---ILVGPSGSGKSCLA 81 EQL + S D + V +ID ++ L G +GK+ L Sbjct: 2 SEQLSLNLNIKQSASISDF----SGPGWVSIIDVVRQMHVGLLTQLYLYGERDTGKTHLL 57 Query: 82 NIWSDKSRSTRFSNIAKSLDSIL-----------IDTRKPVLLEDIDLLDFN---DTQLF 127 N + R S I SL ++ ++ + L+D+D + + +F Sbjct: 58 NAICESFRDIDQSVIYLSLRELINANMDAMVLSSLENTTVIALDDMDAIQGHPEWQEAVF 117 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV-IVKMF 186 H+IN +Y + ++ +R + L DL SRL A ++ D ++ + + Sbjct: 118 HLINLSQEYGNKIIFASRLPVKALNFELRDLLSRLARAATFQLPTGSDRLDRQLILESVL 177 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 R D ++ Y++ + +++++ Sbjct: 178 RRRHWHFDPRIIDYLLNEGPHRIGAMLAILNEL 210 >gi|58579624|ref|YP_198640.1| chromosomal replication initiation protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|71151811|sp|Q5H715|DNAA_XANOR RecName: Full=Chromosomal replication initiator protein DnaA gi|58424218|gb|AAW73255.1| chromosomal replication initiator [Xanthomonas oryzae pv. oryzae KACC10331] Length = 443 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 44/244 (18%), Positives = 87/244 (35%), Gaps = 27/244 (11%) Query: 29 FFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 F+ + + + + A++ ++L G +G GK+ L Sbjct: 102 PFAGNLDSHYTFANFVEGRSNQLGLAAAIQAAQKPGDRAHNPLLLYGSTGLGKTHLMFAA 161 Query: 85 SDKSRSTR-------------FSNIAKSLDSILIDT-------RKPVLLEDIDLLDFND- 123 + R + FS + ++L +D +L++DI D Sbjct: 162 GNALRQAKPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQQIDALLIDDIQFFAGKDR 221 Query: 124 --TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 + FH N++ +++T +P P L SRL V I PD + + Sbjct: 222 TQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLSVAIDPPDFETRAAI 281 Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++ +R I +A I ++M ++ E ++ + A G IT A E L++ Sbjct: 282 VLAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARANFTGRSITVEFAQETLRD 341 Query: 242 TQQC 245 + Sbjct: 342 LLRA 345 >gi|313678901|ref|YP_004056640.1| chromosomal replication initiator protein dnaa [Oceanithermus profundus DSM 14977] gi|313151616|gb|ADR35467.1| chromosomal replication initiator protein DnaA [Oceanithermus profundus DSM 14977] Length = 442 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 83/234 (35%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91 + + +V A + P + + + G G GK+ L + +R Sbjct: 106 NPKYTFESFVVGPGNSMAHAAAMAVAEAPGKAYNPLFIYGGVGLGKTHLMHAVGHYARQR 165 Query: 92 -----------------RFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128 S I + + + V L++D+ + + + FH Sbjct: 166 FPEIRVEYVSTETFTNDLISAIRSDRMNQFRERYRSVDMLLVDDVQFIAGKERTQEEFFH 225 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++++ +L+T+ P L SR + + I PD + ++ Sbjct: 226 TFNTLYEDGKQILLTSDRPPREILTLESRLRSRFEWGLITDIQPPDLETRIAILKMNAER 285 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 R + + +++ Y+ +++ ++ E + ++ A G+ IT +A L + Sbjct: 286 RGVQLSEEVLEYVARQVASNIRELEGALMRLIAYASLSGVTITPKVAQNALADL 339 >gi|327438162|dbj|BAK14527.1| ATPase [Solibacillus silvestris StLB046] Length = 447 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 87/233 (37%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91 + D ++ S A + P++ + G G GK+ L + + Sbjct: 112 NPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPFFIYGGVGLGKTHLMHAIGHYVKEH 171 Query: 92 RFSNIAKSL--------------DSILIDTRK------PVLLEDIDLLDFND---TQLFH 128 + L D+ ID R +L++DI L + + FH Sbjct: 172 NPTANVVYLSSEKFTNEFINSIRDNKTIDFRNKYRNVDVLLIDDIQFLAGKESTQEEFFH 231 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H+ +++++ P L SR + + I+ PD + ++ K Sbjct: 232 TFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDIAPPDLETRIAILRKKAKA 291 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I ++ YI +++ ++ E + ++ + M ++ LAAE LK+ Sbjct: 292 DGLDIPNEVMLYIANQVDTNIRELEGALIRVVAYSSLVNMDVSPELAAEALKD 344 >gi|314922677|gb|EFS86508.1| replication initiator protein DnaA [Propionibacterium acnes HL001PA1] gi|314982903|gb|EFT26995.1| replication initiator protein DnaA [Propionibacterium acnes HL110PA3] gi|315091209|gb|EFT63185.1| replication initiator protein DnaA [Propionibacterium acnes HL110PA4] gi|315094443|gb|EFT66419.1| replication initiator protein DnaA [Propionibacterium acnes HL060PA1] gi|315105163|gb|EFT77139.1| replication initiator protein DnaA [Propionibacterium acnes HL050PA2] gi|327328938|gb|EGE70698.1| DNA-directed DNA replication initiator protein [Propionibacterium acnes HL103PA1] Length = 474 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 85/234 (36%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91 + D ++ ++ A + P + +++ G SG GK+ L + S Sbjct: 138 NPKYTFDSFVIGASNRFAHAAAVAVAEAPGKSYNPLLIYGGSGLGKTHLLHAIGRYVMSY 197 Query: 92 R--FSNIAKSLDSILIDTRKPV------------------LLEDIDLLDF---NDTQLFH 128 S + + D + L++DI L + FH Sbjct: 198 YDNVKVKYVSTEELTNDFINAIGTNRTTEFRRSYRDVDVLLVDDIQFLQSKIQTQEEFFH 257 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H ++MT+ P P L SR + + I PD + ++ + A Sbjct: 258 TFNTLHNAQKQIVMTSDRPPKLLEALEPRLRSRFEWGLLTDIQPPDLETRIAILRRKVAA 317 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +I ++ + +I R++ ++ E + ++ A + SLA VLK+ Sbjct: 318 EKITVEPDVLEFIASRIQTNIRELEGALIRVTAFASLNQQSVDISLAEVVLKDL 371 >gi|84621658|ref|YP_449030.1| chromosomal replication initiation protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188574271|ref|YP_001911200.1| chromosomal replication initiation protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|123725613|sp|Q2P9M1|DNAA_XANOM RecName: Full=Chromosomal replication initiator protein DnaA gi|226735864|sp|B2SUW3|DNAA_XANOP RecName: Full=Chromosomal replication initiator protein DnaA gi|84365598|dbj|BAE66756.1| chromosomal replication initiator [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188518723|gb|ACD56668.1| chromosomal replication initiator protein DnaA [Xanthomonas oryzae pv. oryzae PXO99A] Length = 442 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 44/244 (18%), Positives = 87/244 (35%), Gaps = 27/244 (11%) Query: 29 FFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 F+ + + + + A++ ++L G +G GK+ L Sbjct: 101 PFAGNLDSHYTFANFVEGRSNQLGLAAAIQAAQKPGDRAHNPLLLYGSTGLGKTHLMFAA 160 Query: 85 SDKSRSTR-------------FSNIAKSLDSILIDT-------RKPVLLEDIDLLDFND- 123 + R + FS + ++L +D +L++DI D Sbjct: 161 GNALRQAKPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQQIDALLIDDIQFFAGKDR 220 Query: 124 --TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 + FH N++ +++T +P P L SRL V I PD + + Sbjct: 221 TQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLSVAIDPPDFETRAAI 280 Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++ +R I +A I ++M ++ E ++ + A G IT A E L++ Sbjct: 281 VLAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARANFTGRSITVEFAQETLRD 340 Query: 242 TQQC 245 + Sbjct: 341 LLRA 344 >gi|78187985|ref|YP_378323.1| chromosomal replication initiation protein [Chlorobium chlorochromatii CaD3] gi|78170184|gb|ABB27280.1| chromosomal replication initiator protein, DnaA [Chlorobium chlorochromatii CaD3] Length = 492 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 37/235 (15%), Positives = 79/235 (33%), Gaps = 29/235 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLANIWSDKSRS 90 D L+ A + P +++ G G GK+ + + R Sbjct: 154 NTKYIFDTLIRGDCNSLAFAAAKAVSQNPGQNAFNPLVIYGGVGLGKTHMMQAVGNSVRE 213 Query: 91 TRFSN--IAKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLF 127 R ++ + S + ID + +++DI + ++F Sbjct: 214 NRLTDRVLYVSSEKFAIDFVNAIQNGKIQEFSSFYRSIDVLIIDDIQFFSGKEKTQEEIF 273 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 HI N++HQ + ++++A L SR I PD + + +I+ Sbjct: 274 HIFNTLHQSNKQIILSADRPIKDIKGIEDRLISRFNWGLSADIQPPDYETRKAIILSKLQ 333 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEK-LVDKMDNLALSRGMGITRSLAAEVLKE 241 + +D + +I + ++ E +V + +L I + LK+ Sbjct: 334 HNGVTLDDAVIEFIATNVTENVRELEGCIVKLLAAQSLDN-RDIDLAFTKSTLKD 387 >gi|205371912|ref|ZP_03224732.1| chromosomal replication initiation protein [Bacillus coahuilensis m4-4] Length = 447 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 84/233 (36%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91 + D ++ S A + P++ + + G G GK+ L + Sbjct: 113 NPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVLEH 172 Query: 92 RFSNIAKSL--------------DSILIDTRK------PVLLEDIDLLDFND---TQLFH 128 S L D+ +D R +L++DI L + + FH Sbjct: 173 NPSAKVVYLSSEKFTNEFINSIRDNKAVDFRNRYRNVDVLLIDDIQFLAGKEQTQEEFFH 232 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H+ +++++ P L SR + + I+ PD + ++ K Sbjct: 233 TFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 292 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I + YI +++ ++ E + ++ + I LA+E LK+ Sbjct: 293 EGLDIPNEAMLYIANQIDTNIRELEGALIRVVAYSSLINKDINADLASEALKD 345 >gi|152977689|ref|YP_001343318.1| chromosomal replication initiation protein [Actinobacillus succinogenes 130Z] gi|171472899|sp|A6VK86|DNAA_ACTSZ RecName: Full=Chromosomal replication initiator protein DnaA gi|150839412|gb|ABR73383.1| chromosomal replication initiator protein DnaA [Actinobacillus succinogenes 130Z] Length = 455 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 36/230 (15%), Positives = 89/230 (38%), Gaps = 27/230 (11%) Query: 40 RDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLAN-----IWSDKSRS 90 ++ + + + A + + P + L G +G GK+ L + I ++ ++ Sbjct: 125 FENFVEGKSNQLARAVGIKVANNPGDKTANPLFLYGGTGLGKTHLLHAVGNGILANNPKA 184 Query: 91 TRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINS 132 A+ + K +L++DI + + F+ N+ Sbjct: 185 RVLYIHAERFVQEYVKATKLGAAENFKKFYRNLDALLIDDIQFFAGKELTQEEFFNTFNN 244 Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 + + + +++T+ +P L SR V I P+ + +++K +R + Sbjct: 245 LFEGEKQIILTSDRYPREIEKIEDRLKSRFSWGLSVAIEPPELETRVAILMKKAEERGVN 304 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + +++A +I Q++ + E ++++ A G IT + LK+ Sbjct: 305 LAEEVAFFIGQKLRTHVRELEGALNRVIANAEFTGKTITIDFVRDTLKDM 354 >gi|329576316|gb|EGG57831.1| replication initiator protein DnaA [Enterococcus faecalis TX1467] Length = 447 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 40/234 (17%), Positives = 83/234 (35%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS--- 88 + D ++ + A + P + G G GK+ L + + Sbjct: 112 NPKYTFDTFVIGKGNQMAHAAALVVAEDPGSIYNPLFFYGGVGLGKTHLMHAIGHQMLVN 171 Query: 89 --RSTRFSNIAKSLDSILIDTR---------------KPVLLEDIDLLDFNDTQL---FH 128 + +++ + I++ +L++DI L + L F Sbjct: 172 QPDAKVKYVSSETFTNEFINSIQTKTSEQFRKEYRNVDLLLVDDIQFLAEKEATLEEFFR 231 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N ++ + +++T+ P L SR V I+ PD + ++ K Sbjct: 232 TFNDLYNENKQIVLTSDRPPNDIPKLPERLVSRFAWGLSVDITPPDLETRIAILRKKADA 291 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ I +YI +++ ++ E + ++ A G IT SLAA+ LK Sbjct: 292 ERLEIPDDTLSYIAGQIDSNIRELEGALVRVQAFATINGEDITTSLAADALKSL 345 >gi|324999881|ref|ZP_08120993.1| chromosomal replication initiation protein [Pseudonocardia sp. P1] Length = 593 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 91/234 (38%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90 + D ++ ++ A + P+ + + G SG GK+ L + ++ Sbjct: 254 NERYTFDTFVIGASNRFSHAAAVAVSEAPARAYNPLFIWGESGLGKTHLLHAVGHYAQRL 313 Query: 91 -----TRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDFND---TQLFH 128 R+ + + + + R +L++DI L+ + + FH Sbjct: 314 FPGMRVRYVSTEEFTNDFINSLRDDRKVAFQRRYRDVDVLLVDDIQFLEGKEGTQEEFFH 373 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H + +++++ P + +R + + I P+ + ++ K A Sbjct: 374 TFNTLHNANKQIVVSSDRPPKRLETLEDRMRTRFEWGLITDIQPPELETRIAILRKKAAQ 433 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ + ++ +I +R+ER++ E + ++ A + LA VL++ Sbjct: 434 DRLAVPGEVLEFIAERIERNIRELEGALIRVTAFASLNRQAVDTQLAEIVLRDL 487 >gi|198417057|gb|ACH87840.1| DnaA [Francisella noatunensis subsp. noatunensis] Length = 433 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 38/249 (15%), Positives = 91/249 (36%), Gaps = 30/249 (12%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN 82 ++ F P D +V A + A P ++ + + G SG GK+ L Sbjct: 115 QEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLHNPLFIYGGSGLGKTHLMQ 174 Query: 83 IWSDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFN 122 + +R + +S + + + ++DI + Sbjct: 175 AIGNHAREVNPNARIIYTNSEQFIKDYVNSIRLQDQDEFQRVYRSADILFIDDIQFIAGK 234 Query: 123 D---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179 + + FH N++++ +++T+ +P L SR V + +PD + Sbjct: 235 EGTAQEFFHTFNALYENGKQIILTSDKYPNEIEGLEERLVSRFGYGLTVSVDMPDLETRI 294 Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA---- 235 +++K D + + AA+I + + ++ E ++++ + T +A Sbjct: 295 AILLKKAYDLGQKLPNETAAFIAENVRTNVRELEGALNRVLTTSKFNHKDPTIEVAQACS 354 Query: 236 AEVLKETQQ 244 +V+K ++ Sbjct: 355 RDVIKIQEK 363 >gi|195973854|gb|ACG63492.1| chromosomal replication initiator protein DnaA [Francisella noatunensis] Length = 434 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 38/249 (15%), Positives = 91/249 (36%), Gaps = 30/249 (12%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN 82 ++ F P D +V A + A P ++ + + G SG GK+ L Sbjct: 116 QEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLHNPLFIYGGSGLGKTHLMQ 175 Query: 83 IWSDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFN 122 + +R + +S + + + ++DI + Sbjct: 176 AIGNHAREVNPNARIIYTNSEQFIKDYVNSIRLQDQDEFQRVYRSADILFIDDIQFIAGK 235 Query: 123 D---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179 + + FH N++++ +++T+ +P L SR V + +PD + Sbjct: 236 EGTAQEFFHTFNALYENGKQIILTSDKYPNEIEGLEERLVSRFGYGLTVSVDMPDLETRI 295 Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA---- 235 +++K D + + AA+I + + ++ E ++++ + T +A Sbjct: 296 AILLKKAYDLGQKLPNETAAFIAENVRTNVRELEGALNRVLTTSKFNHKDPTIEVAQACS 355 Query: 236 AEVLKETQQ 244 +V+K ++ Sbjct: 356 RDVIKIQEK 364 >gi|330752007|emb|CBL80520.1| chromosomal replication initiation protein [uncultured Polaribacter sp.] Length = 475 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 41/259 (15%), Positives = 90/259 (34%), Gaps = 37/259 (14%) Query: 10 FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66 F +P QK E QL + + + + A + + P Sbjct: 125 FVIPGLQKV----KIESQL------NPNYNFVNFVEGDSNRLARSAGMAVANKPGGTSFN 174 Query: 67 -VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTR 108 +++ G G GK+ L++ S+K ++ + + I Sbjct: 175 PLLIYGGVGLGKTHLSHAIGVDIKDKYPDKTVLYISSEKFTQQFIDSVKSNTRNDFIHFY 234 Query: 109 ---KPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 ++++D+ L FHI N +HQ +++T+ PV L SR Sbjct: 235 QMIDVLIIDDVQFLSGKAGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSRF 294 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 K ++ PD + ++ + + ++ YI + ++ ++ E ++ M Sbjct: 295 KWGLSAELQAPDYETRISILDNKLFRDGVEMPSEIVEYIAKNIKSNVRELEGVIISMIAQ 354 Query: 223 ALSRGMGITRSLAAEVLKE 241 A + LA +++ + Sbjct: 355 ASFNRREFSLELAKQIVDK 373 >gi|172039681|ref|YP_001799395.1| chromosomal replication initiation protein [Corynebacterium urealyticum DSM 7109] gi|171850985|emb|CAQ03961.1| chromosomal replication initiator protein [Corynebacterium urealyticum DSM 7109] Length = 586 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 35/236 (14%), Positives = 85/236 (36%), Gaps = 26/236 (11%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTR- 92 + + ++ + + A + P+R + + G SG GK+ L + ++ + Sbjct: 250 KYTFESFVIGGSNQFAHAACRAVAEAPARAYNPLFIWGESGLGKTHLLHAIGHYAKELQP 309 Query: 93 ----------------FSNIAKSLDSILIDTRK---PVLLEDIDLLDFND---TQLFHII 130 ++IA + ++++DI L + + FH Sbjct: 310 DMRVRYVSSEELTNDFINSIANDRREEFKREYRNLDMLIVDDIQFLQGKESTQEEFFHTF 369 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N++HQ + +++++ P L +R + + + PD + ++ + A Sbjct: 370 NALHQANKQIVLSSDRPPRQLTTLEDRLRTRFEGGLITDVQTPDLETRMAILSRKAAAEG 429 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + + + I R E S+ E + ++ IT+ A L++ D Sbjct: 430 TTLPEDVLELIASRYETSIRELEGALIRVTAYCSLGKEPITKQAAEIALRDIMPVD 485 >gi|319945018|ref|ZP_08019280.1| DNA-directed DNA replication initiator protein [Lautropia mirabilis ATCC 51599] gi|319741588|gb|EFV94013.1| DNA-directed DNA replication initiator protein [Lautropia mirabilis ATCC 51599] Length = 592 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 89/234 (38%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86 G++ + A + A P + + G G GK+ L I Sbjct: 256 NPGLTFAAFVNGKANDLARAAALQVADRPGSAYNPLFIHGGVGLGKTHLMQAVGNAIQQR 315 Query: 87 KSRSTR--------FSNIAKSLDSILID-------TRKPVLLEDIDLLD---FNDTQLFH 128 +SR+ ++ +++ ID + +L++DI L + + FH Sbjct: 316 ESRAIIRYISSNQFVQDLIQAIRRNAIDRFKHYYQSLDVLLIDDIQFLSDKQRSQEEFFH 375 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 + ++ +++T T+P L SRL + +V I P+ + ++ + Sbjct: 376 VFETMTINQRQIVITCDTYPKELKGIDDRLISRLNSGLIVAIEPPELEMRVAILQRKAEQ 435 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +I + +A +I + + R++ E + + + A R +T L E LK+ Sbjct: 436 ARIRLPDDVAYFIAKNIRRNVRELEGALQRAIHYASFRSSPLTLELVKEALKDL 489 >gi|312878753|ref|ZP_07738553.1| chromosomal replication initiator protein DnaA [Aminomonas paucivorans DSM 12260] gi|310782044|gb|EFQ22442.1| chromosomal replication initiator protein DnaA [Aminomonas paucivorans DSM 12260] Length = 439 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 44/256 (17%), Positives = 88/256 (34%), Gaps = 30/256 (11%) Query: 13 PDKQKNDQPKNKEEQLFFSF-PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVI 68 P++QK QL D +V + A + P + Sbjct: 86 PNEQKRA---EAAAQLVVPKNGLNPNYVFDTFVVGKSNRLAHAASLASAESPGVAYNPLF 142 Query: 69 LVGPSGSGKSCLANIWSD-----KSRSTRFSNIAKSLDSILIDTR--------------- 108 + G G GK+ L + + ++ + LI + Sbjct: 143 IWGGVGLGKTHLMHAIGHYVSENLPGAKVVYVSSEKFTNELISSIQNNRTQDFKAKYRSV 202 Query: 109 KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 +L++DI L + + FH NS+H +++++ P L SR + Sbjct: 203 DVLLIDDIQFLADKESTQEEFFHTFNSLHDAKKQVVISSDRPPKDIQRVEERLVSRFEWG 262 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 V I PD + ++ K R + + + ++ Q + ++ E ++++ + Sbjct: 263 LVTDIQPPDLETRVAILQKKAELRGYVVPEDVIFFLAQNIPSNIRELEGALNRVVACSEL 322 Query: 226 RGMGITRSLAAEVLKE 241 G I+ AAE LK+ Sbjct: 323 NGEPISTERAAEWLKD 338 >gi|320105247|ref|YP_004180837.1| chromosomal replication initiator protein DnaA [Terriglobus saanensis SP1PR4] gi|319923768|gb|ADV80843.1| chromosomal replication initiator protein DnaA [Terriglobus saanensis SP1PR4] Length = 478 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 42/246 (17%), Positives = 89/246 (36%), Gaps = 30/246 (12%) Query: 26 EQLFFSFPRCLGIS----RDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKS 78 EQ F + ++ D+ ++ S + A + PS+ + L G G GK+ Sbjct: 132 EQARFDWNTASQLNARYLFDNFVIGSGNQFAHAASQAVAERPSKAYNPLFLYGGVGMGKT 191 Query: 79 CLANIWSDK------SRSTRFSNIAKSLDSILIDTR--------------KPVLLEDIDL 118 L + S + + K + ++ R +L++DI Sbjct: 192 HLMQAIGHEVKRRNPHASISYVSGEKFTNEMINSVRYDKMTTFRDKFRTVDVLLIDDIQF 251 Query: 119 LDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 L + + FH N++H+ +++ + P L SR + + I PD Sbjct: 252 LAGKERTQEEFFHTFNALHESMKQIVIASDRPPKELADFEDRLRSRFEWGLIADIQPPDL 311 Query: 176 DFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235 + ++ K Q + +A ++ + ++ E + ++ G+ IT A Sbjct: 312 ETKVAILQKKAESEQTVLPIDVALFVASNVRTNVRELEGALVRLLAWCSLHGVEITLPTA 371 Query: 236 AEVLKE 241 + LK+ Sbjct: 372 QQCLKQ 377 >gi|88813024|ref|ZP_01128266.1| chromosomal replication initiator protein DnaA [Nitrococcus mobilis Nb-231] gi|88789657|gb|EAR20782.1| chromosomal replication initiator protein DnaA [Nitrococcus mobilis Nb-231] Length = 432 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 77/235 (32%), Gaps = 28/235 (11%) Query: 35 CLGISRDDLLVHSAIEQAVR----LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS 90 + D + + + A L+++ P + + G G GK+ L + + Sbjct: 98 NPNFTFDTFVEGKSNQLARAASSQLVEN-PGGAYNPLFIYGGVGLGKTHLMHAIGNALLQ 156 Query: 91 TRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFND---TQLF 127 L S +L++DI + + F Sbjct: 157 RLPDAEVLYLHSERFVGDMVKALQHNAINEFKRYYRGVNALLIDDIQFFAGKERSQEEFF 216 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + ++M+ +P L SR V I P+ + +++ Sbjct: 217 HTFNALLEGQQQVVMSCDRYPKEVQGLEERLKSRFGWGLTVAIEPPEFETRAAILMTKAN 276 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 I + ++A +I +R+ ++ E + ++ + G IT L++ Sbjct: 277 LEGIELPHEVAFFIAKRIRSNVRELEGALRRVIANSYFTGERITVEFTKGALRDL 331 >gi|315931305|gb|EFV10274.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni 327] Length = 440 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 44/234 (18%), Positives = 80/234 (34%), Gaps = 28/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLI------DSWPSWPSRVVILVGPSGSGKSCLANIWSDKS 88 + + +V + + A D + + GP+G GK+ L + S Sbjct: 102 NPSFTFESFVVGDSNKYAYGACKAIIHKDKLGK-LYNPIFVYGPTGLGKTHLLQAVGNAS 160 Query: 89 RSTRFSNIAKSLDSILIDTRK------------------PVLLEDIDLLDFND---TQLF 127 I + ++ + D +L++D+ L D + F Sbjct: 161 LEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEEFF 220 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 I N I D ++MT+ P L SR + I+ P D +I K Sbjct: 221 FIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIRKKCE 280 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 I + + YI + ++ E ++ ++ A G IT LA V+K+ Sbjct: 281 FNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKSVMKD 334 >gi|256821229|ref|YP_003145192.1| chromosomal replication initiator protein DnaA [Kangiella koreensis DSM 16069] gi|256794768|gb|ACV25424.1| chromosomal replication initiator protein DnaA [Kangiella koreensis DSM 16069] Length = 461 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 33/234 (14%), Positives = 77/234 (32%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSW---PSWPSRVVILVGPSGSGKSCLAN--------- 82 + + + A P + + G G GK+ L + Sbjct: 127 NPKFLFSSFVEGKSNQLARAAAQQVVENPGEAYNPLFIYGGVGLGKTHLMHSVGNSILDK 186 Query: 83 --------IWSDKSRSTRFSNIAKSLDSIL---IDTRKPVLLEDIDLLD---FNDTQLFH 128 + S++ + + + +L++DI + FH Sbjct: 187 NPNAHIVYLHSERFMANMVKALQTGTMDKFKNFYRSVDALLIDDIQFFANKGRTQEEFFH 246 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++ + + +++T FP L SR V + P+ + +++ Sbjct: 247 TFNNLIEKNKQVIITCDRFPKEVEGLEERLKSRFGWGLTVAVEPPELETRVAILMSKAQS 306 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +I + ++A +I +R+ ++ E + ++ A G IT + LK+ Sbjct: 307 SKIELPNEVAFFIAKRIRSNVRELEGALKRVIANAQFTGRAITLDFVKDALKDL 360 >gi|86152361|ref|ZP_01070571.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni 260.94] gi|315123617|ref|YP_004065621.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85840658|gb|EAQ57910.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni 260.94] gi|315017339|gb|ADT65432.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 440 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 44/234 (18%), Positives = 80/234 (34%), Gaps = 28/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLI------DSWPSWPSRVVILVGPSGSGKSCLANIWSDKS 88 + + +V + + A D + + GP+G GK+ L + S Sbjct: 102 NPSFTFESFVVGDSNKYAYGACKAIIHKDKLGK-LYNPIFVYGPTGLGKTHLLQAVGNAS 160 Query: 89 RSTRFSNIAKSLDSILIDTRK------------------PVLLEDIDLLDFND---TQLF 127 I + ++ + D +L++D+ L D + F Sbjct: 161 LEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEEFF 220 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 I N I D ++MT+ P L SR + I+ P D +I K Sbjct: 221 FIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIRKKCE 280 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 I + + YI + ++ E ++ ++ A G IT LA V+K+ Sbjct: 281 FNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKSVMKD 334 >gi|313885387|ref|ZP_07819137.1| chromosomal replication initiator protein DnaA [Eremococcus coleocola ACS-139-V-Col8] gi|312619117|gb|EFR30556.1| chromosomal replication initiator protein DnaA [Eremococcus coleocola ACS-139-V-Col8] Length = 449 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 91/234 (38%), Gaps = 28/234 (11%) Query: 35 CLGISRDDLLVHSAIEQA----VRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--- 87 + ++ ++ + A + +++S P ++ G G GK+ L ++ Sbjct: 114 NPNYTFENFVIGEDNKMASVAALAVVES-PGKTYNPFLIYGGVGLGKTHLMQAIGNEIKH 172 Query: 88 --SRSTRFSNIAKSLDSILIDTR---------------KPVLLEDIDLL---DFNDTQLF 127 + ++S + I + +L++DI L D + F Sbjct: 173 RNPGAKIKYATSESFVNDFITSIQNGSQDHFRQMYREIDILLIDDIQFLSNKDKTQEEFF 232 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N+++ +++T+ P + L SR K I+ PD + ++ K + Sbjct: 233 HTFNALYNNGKQIVLTSDRLPNNITNLEERLISRFKWGLSTDITPPDLETRIAILRKKAS 292 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I+ + YI ++ ++ E + ++ A +G+ IT LAAE LK Sbjct: 293 TDNLDINSETLTYIASHIDSNIRELEGALVRVIAYAAIKGLDITTDLAAEALKN 346 >gi|91203534|emb|CAJ71187.1| similar to chromosomal replication initiator protein DnaA [Candidatus Kuenenia stuttgartiensis] Length = 472 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 84/234 (35%), Gaps = 25/234 (10%) Query: 37 GISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW--------- 84 + ++ +V + A + P + + + G SG GK+ L + Sbjct: 142 RYTFENFVVAAYNRMAHAAAISVAGSPGYAYNPLFIHGASGLGKTHLMHAINNFILQQGR 201 Query: 85 -------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDI---DLLDFNDTQLFHIIN 131 + + S I + + V L++DI + + + FH N Sbjct: 202 LKTFYLSCEHFVNHYISAIQSNNMEAFRKFYRNVDVLLMDDIQFFENSYGSREEFFHTFN 261 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 +++ +++T+ P S L SR K V IS P + ++ K A I Sbjct: 262 ALYNDGKQIVITSNYPPESIAYMEDRLVSRFKWGLVCGISTPSLETRAAIVEKRAAAWNI 321 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 + + A Y+ + + ++ E + ++ N A + ++ +V +E Sbjct: 322 KVSHESAVYLAENIPGNIRELEGAIARLSNEAKATNNAVSFDFIRKVSREISGS 375 >gi|289207188|ref|YP_003459254.1| chromosomal replication initiator protein DnaA [Thioalkalivibrio sp. K90mix] gi|288942819|gb|ADC70518.1| chromosomal replication initiator protein DnaA [Thioalkalivibrio sp. K90mix] Length = 455 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 37/234 (15%), Positives = 83/234 (35%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSD----- 86 + D + + + A P + + G G GK+ L + + Sbjct: 121 NPAFTFDTFVEGKSNQLARAASLQVAENPGVAYNPLFIYGGVGLGKTHLMHAIGNSILSR 180 Query: 87 --------KSRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLFH 128 +++ K+L ID T +L++DI + + FH Sbjct: 181 LPEGRIIYLHSERFVADMIKALQHNAIDDFKQHYRTADALLIDDIQFFANKERSQEEFFH 240 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++ + +++T+ +P L SR + I P+ + ++ + Sbjct: 241 TFNALLEGQQQIILTSDRYPKEVEGLEERLKSRFGWGLTIAIEPPELETRVAILQRKAEQ 300 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 I + ++A ++ +R+ ++ E + ++ A G IT A E L++ Sbjct: 301 AGIELPTEVAFFMGKRIRSNIRELEGSLRRVIANAHFTGKPITLDFAKEALRDL 354 >gi|57233687|ref|YP_180756.1| chromosomal replication initiator protein DnaA [Dehalococcoides ethenogenes 195] gi|57224135|gb|AAW39192.1| chromosomal replication initiator protein DnaA [Dehalococcoides ethenogenes 195] Length = 445 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 38/259 (14%), Positives = 84/259 (32%), Gaps = 26/259 (10%) Query: 7 DYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV 66 + + + P+ E+ F + + +V S A + P + Sbjct: 79 GFQLVQSAQVQAAAPQTAREKTVSPF--NPRYTFESFIVGSCNRLAHAASLAATQNPGKS 136 Query: 67 ---VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN- 122 + + +G GK+ L + R + S + D + + Sbjct: 137 YNPLYIYAAAGLGKTHLLQAIGHLANLNRRKALYVSGEQFTTDFISSIRNGQTEEFRARY 196 Query: 123 --------------------DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 + LFH N +H + ++++A + P S L SR Sbjct: 197 RDVDLLLLDDVQFIGGKEQTEECLFHTFNDLHNSNRQIVISADSPPKSLPQLAERLRSRF 256 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 + ++I PD+ +++ ++ Y+ Q ++ ++ E ++++ Sbjct: 257 EWGLTIEIEPPDEKTRLELLQLKAEQSGTELNMDTLEYLAQEVKHNIRELEGSLNRVLAY 316 Query: 223 ALSRGMGITRSLAAEVLKE 241 A IT LAA L + Sbjct: 317 ARLLRATITPDLAARALSD 335 >gi|163790919|ref|ZP_02185342.1| chromosomal replication initiator protein DnaA [Carnobacterium sp. AT7] gi|159873761|gb|EDP67842.1| chromosomal replication initiator protein DnaA [Carnobacterium sp. AT7] Length = 358 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 41/234 (17%), Positives = 81/234 (34%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK---- 87 + D ++ + A + P + G G GK+ L + + Sbjct: 24 NTKYTFDTFVIGKGNQMAHAAALVVAEEPGTIYNPLFFYGGVGLGKTHLMHAIGHQMLLL 83 Query: 88 ---SRSTRFSNIAKSLDSILI-------------DTRKPVLLEDIDLLD---FNDTQLFH 128 +R S+ + D I + +L++DI + FH Sbjct: 84 NPDARVKYVSSETFANDFINSIQNKTQEKFRNEYRSVDLLLVDDIQFFADKEGTQEEFFH 143 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N+++ +++T+ P L SR V I+ PD + ++ K Sbjct: 144 TFNALYDDRKQIVLTSDRLPNEIPKLQERLVSRFAWGLSVDITPPDLETRIAILRKKANA 203 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ I +YI +++ ++ E + ++ A IT SLAA+ LK Sbjct: 204 ERLEIPGDTLSYIAGQIDSNIRELEGALVRVQAYAAIESRDITTSLAADALKSM 257 >gi|225575691|ref|ZP_03784301.1| hypothetical protein RUMHYD_03784 [Blautia hydrogenotrophica DSM 10507] gi|225037095|gb|EEG47341.1| hypothetical protein RUMHYD_03784 [Blautia hydrogenotrophica DSM 10507] Length = 449 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 42/241 (17%), Positives = 87/241 (36%), Gaps = 29/241 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLAN-----IWSD 86 + +V S + A + P + + G G GK+ L + I Sbjct: 109 NPRYTFGTFVVGSNNKFAHAASLAVAESPGEIYNPLFIYGGVGLGKTHLMHSIARFILEH 168 Query: 87 KSRSTRFSNIAKSLDSILIDTRK------------------PVLLEDIDLL---DFNDTQ 125 S ++ + LI+ + +L++D+ + D + Sbjct: 169 NPDSKVLYVTSEEFTNELIEAIRNGNNTAMTQFRDKYRNIDVLLVDDVQFIIGKDATQEE 228 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 FH NS+H +++++ P + + SR + + IS PD + ++ K Sbjct: 229 FFHTFNSLHSAKKQIIISSDKPPKDMEILEDRIRSRFEWGLIADISSPDYETRVAILKKK 288 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 I++ + YI ++ ++ E ++K+ A +T LA +VLK+ Sbjct: 289 EEMDGYDINEDVIKYIATNIKSNIRELEGSLNKVMAFANLEKREVTVELAEQVLKDIISP 348 Query: 246 D 246 D Sbjct: 349 D 349 >gi|313681131|ref|YP_004058869.1| chromosomal replication initiator protein dnaa [Sulfuricurvum kujiense DSM 16994] gi|313153991|gb|ADR32669.1| chromosomal replication initiator protein DnaA [Sulfuricurvum kujiense DSM 16994] Length = 442 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 90/234 (38%), Gaps = 24/234 (10%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLAN----IWSDK 87 + + +V + A + P + + G G GK+ L + + Sbjct: 106 NPSFTFQNFVVGDSNNFAFIAAKNVSEKPGVVYNPLFIYGGVGLGKTHLMQSVGNVMLSQ 165 Query: 88 SRSTRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDFN---DTQLFHII 130 ++ ++++ + L+ +L++DI L + FH Sbjct: 166 GKTVIYTSVEQFLNDFTRHLSNRTMDRFKDKYRKCDLLLIDDIQFLSNKNQIQEEFFHTF 225 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 +++ + +++T+ P G L SR ++ V I P+ + ++I K + Sbjct: 226 DALRNENKQIIITSDKPPKKIGGLEERLKSRFESGLVADIQPPELETKIEIIKKKCEINR 285 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 + +D+++ Y+ +E + E ++ K++ + G+ IT A VLKE Sbjct: 286 VKLDREVINYVATIIENNTREIEGILSKLNAYSQLMGVDITIEFARNVLKEQMA 339 >gi|269977741|ref|ZP_06184701.1| chromosomal replication initiator protein DnaA [Mobiluncus mulieris 28-1] gi|269934045|gb|EEZ90619.1| chromosomal replication initiator protein DnaA [Mobiluncus mulieris 28-1] Length = 516 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 44/250 (17%), Positives = 92/250 (36%), Gaps = 28/250 (11%) Query: 20 QPKNKEEQLFFSFPRCLGISRDDLLVHSAI---EQAVRLIDSWPSWPSRVVILVGPSGSG 76 P Q+ + + + ++ S+ A + P+ + + G SG G Sbjct: 159 APIPASMQIDRNTGLNPMYTFESFVIGSSNSFTAAAAESVVVSPAQAYNPLFIYGGSGLG 218 Query: 77 KSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDI 116 K+ L + S++ + + IA L + V L++DI Sbjct: 219 KTHLLHAIGNYALELYPQAKVRYVSSEEFTNDFINAIATQTFPELQAKYREVDFLLIDDI 278 Query: 117 DLLDFNDTQL---FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 L + L FH N++H +++T+ P + SRL+ + I P Sbjct: 279 QFLQGKEQTLEEFFHTFNTLHTARKQVVITSDVPPKELKSFEERIKSRLEWGLLTDIQPP 338 Query: 174 DDDFLEKVIVKMFADRQIF-IDKKLAAYIVQRMERSLVFAEKLVDKMDN-LALSRGMGIT 231 + + ++ + A + D + YI + ++ E + ++ ALS G ++ Sbjct: 339 NLETRIAILRRKSAQENLQGYDDAVLEYIASNISSNIRELEGALLRVTAYAALSGGGSVS 398 Query: 232 RSLAAEVLKE 241 A E+L++ Sbjct: 399 LDTAKEILRD 408 >gi|206889361|ref|YP_002247869.1| chromosomal replication initiator protein DnaA [Thermodesulfovibrio yellowstonii DSM 11347] gi|259645263|sp|B5YGT9|DNAA_THEYD RecName: Full=Chromosomal replication initiator protein DnaA gi|206741299|gb|ACI20356.1| chromosomal replication initiator protein DnaA [Thermodesulfovibrio yellowstonii DSM 11347] Length = 438 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 86/235 (36%), Gaps = 28/235 (11%) Query: 35 CLGISRDDLLVHSAIEQA----VRLIDSWPSWPSRVVILVGPSGSGKSCL---------- 80 + D +V + + A R+ ++ P + + + G G GK+ L Sbjct: 103 NPKYTFDTFVVGPSNQFAHAASFRVAEN-PGFAYNPLFIYGGVGLGKTHLITAIGNYILD 161 Query: 81 -------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLF 127 I S++ S I + + V L++DI + D + F Sbjct: 162 KKPEMNVCYISSEQFTGEFVSAIRHEKMPEFRNKYRTVDVFLVDDIQFIAGKDSTQEEFF 221 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N ++ +++++ P+ L SR + I P+ + ++ K Sbjct: 222 HTFNELYSKQKQIVISSDRPPMEISDITDRLRSRFGMGLIADIQPPEIETRLAILYKKAD 281 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + +A +I R++ ++ E + K+ + I+ +A VL++ Sbjct: 282 MEGVKLPEDVAYFIASRVKSNVRELEGSLIKLCAYTSLTKVPISMDVAKYVLRDL 336 >gi|300087140|ref|YP_003757662.1| chromosomal replication initiator protein DnaA [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299526873|gb|ADJ25341.1| chromosomal replication initiator protein DnaA [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 463 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 43/254 (16%), Positives = 88/254 (34%), Gaps = 30/254 (11%) Query: 13 PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW--PSW-PSRVVIL 69 P K KN++ F+ + + +V ++ A S S + + Sbjct: 110 PAKTDRQPVKNRDGHRCFN----PKYNFNSFIVGNSNRMAHAAALSAAHQSGQAYNPLFI 165 Query: 70 VGPSGSGKSCLANIWSDKSR---------------STRFSNIAKSLDSILIDTRKPV--- 111 G SG GK+ L + S + + + + + V Sbjct: 166 HGSSGLGKTHLLQAIGQTAGDEGRRVRYVSGEQFTSEFVAALKERRADEFRELYRNVDVL 225 Query: 112 LLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATV 167 L++DI + + FH N +H ++++A + P L D L SR + Sbjct: 226 LIDDIQFIAGKAQTEESFFHTFNELHNNGKQIVLSADSPPREIS-QLEDRLRSRFEWGLT 284 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 +I PD+ ++ + I + Y+ + R++ E ++++ + Sbjct: 285 TEIFPPDEKTRLSILKTRAEETGAEITPDVLDYLASEVIRNIRELEGNLNRVLAYSRLLR 344 Query: 228 MGITRSLAAEVLKE 241 IT +A + LK Sbjct: 345 SAITPEVARQALKN 358 >gi|213622042|ref|ZP_03374825.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 309 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 38/206 (18%), Positives = 84/206 (40%), Gaps = 23/206 (11%) Query: 60 PSWPSRVVILVGPSGSGKSCLAN-----IWSDKSRS--------TRFSNIAKSLDSILID 106 P + L G +G GK+ L + I + K + ++ K+L + I+ Sbjct: 3 PGGAYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIE 62 Query: 107 -------TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156 + +L++DI + + FH N++ + + +++T+ +P Sbjct: 63 EFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVED 122 Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216 L SR V I P+ + +++K + I + ++A +I +R+ ++ E + Sbjct: 123 RLKSRFGWGLTVAIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGAL 182 Query: 217 DKMDNLALSRGMGITRSLAAEVLKET 242 +++ A G IT E L++ Sbjct: 183 NRVIANANFTGRAITIDFVREALRDL 208 >gi|194335183|ref|YP_002016977.1| chromosomal replication initiator protein DnaA [Pelodictyon phaeoclathratiforme BU-1] gi|194307660|gb|ACF42360.1| chromosomal replication initiator protein DnaA [Pelodictyon phaeoclathratiforme BU-1] Length = 487 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 79/235 (33%), Gaps = 29/235 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLANIWSDKSRS 90 + D L+ A S P +++ G G GK+ + + R Sbjct: 149 NSKYTFDTLIRGDCNSLAFAASKSVAQSPGQNAFNPLVIYGGVGLGKTHMMQAIGNSVRE 208 Query: 91 TRFSN--IAKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLF 127 R S + S + ID + +++DI + ++F Sbjct: 209 NRLSERVLYVSSEKFAIDFVNAIQNGKIQEFSSFYRSIDVLIIDDIQFFSGKEKTQEEIF 268 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 HI N++HQ + ++++A L SR I PD + + +I+ Sbjct: 269 HIFNTLHQSNKQIILSADRPIKDIKGIEDRLISRFNWGLSADIQPPDYETRKAIILSKLH 328 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEK-LVDKMDNLALSRGMGITRSLAAEVLKE 241 + +D+ + +I + ++ E +V + +L I LK+ Sbjct: 329 QSGVNLDETVIEFIATNVTENVRELEGCIVKLLAAQSLDN-REIDLQFTKSTLKD 382 >gi|255264264|ref|ZP_05343606.1| chromosomal replication initiator protein DnaA [Thalassiobium sp. R2A62] gi|255106599|gb|EET49273.1| chromosomal replication initiator protein DnaA [Thalassiobium sp. R2A62] Length = 447 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 35/244 (14%), Positives = 80/244 (32%), Gaps = 31/244 (12%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSR 89 P + D +V E A + L G G GK+ L + + + Sbjct: 106 PLDARFTFDRFVVGKPNELAFAAAKRVAEGGPVTFNPLFLYGGVGLGKTHLMHAIAHELT 165 Query: 90 STRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDF---NDTQL 126 + R L + + + ++++D+ + + Sbjct: 166 ARRSDLNVLYLSAEQFMYRFVTALRENSMMDFKHMFRSVDILMVDDVQFIAGKGSTQEEF 225 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH N++ + ++++A P + SRL++ VV + D + ++ Sbjct: 226 FHTFNALVDQNKQIIISADRAPGEIKDLEERIKSRLQSGLVVDLHPTDYELRLGILQSKV 285 Query: 187 ADR-----QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I + ++ R+ ++ E + ++ A G IT LA + L + Sbjct: 286 RAYREQYAGLVIADGVLEFLAHRISTNVRVLEGALTRLYAFASLVGKEITLELAQDCLSD 345 Query: 242 TQQC 245 + Sbjct: 346 ILRA 349 >gi|288939765|ref|YP_003442005.1| chromosomal replication initiator protein DnaA [Allochromatium vinosum DSM 180] gi|288895137|gb|ADC60973.1| chromosomal replication initiator protein DnaA [Allochromatium vinosum DSM 180] Length = 453 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 38/263 (14%), Positives = 88/263 (33%), Gaps = 33/263 (12%) Query: 13 PDKQKNDQPKNKEEQLFFSFPRCLG-------ISRDDLLVHSAIEQAVRL---IDSWPSW 62 P K K + +K + + D + + + A I P Sbjct: 90 PAKGKGARAGSKASVIDSDLATRRAAANLNADFNFDTFVEGKSNQLARAASIQIARNPGG 149 Query: 63 PSRVVILVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDT---------- 107 + + G G GK+ L + I + + ++ + +I Sbjct: 150 TYNPLFIYGGVGLGKTHLMHAVGNVILASNPSARVVYLHSERFVAEMIKALQHNRIEDFK 209 Query: 108 -----RKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC 159 +L++D+ + + FH N++ + +++++ FP L Sbjct: 210 KTYRSVNALLIDDVQFFAGKERSQEEFFHTFNALLESGQQIVLSSDRFPKEVTGLEERLR 269 Query: 160 SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 SR V I PD + ++ + + + +A ++ +R+ ++ E + ++ Sbjct: 270 SRFGWGLTVAIDPPDLETSVAILHCKATQLGVELPEDVAFFVGRRIRSNIRELEGALRRL 329 Query: 220 DNLALSRGMGITRSLAAEVLKET 242 A G IT A + L++ Sbjct: 330 VANAHFTGKPITLEFAKQALRDV 352 >gi|167031024|ref|YP_001666255.1| chromosomal replication initiation protein [Pseudomonas putida GB-1] gi|189044600|sp|B0KEU9|DNAA_PSEPG RecName: Full=Chromosomal replication initiator protein DnaA gi|166857512|gb|ABY95919.1| chromosomal replication initiator protein DnaA [Pseudomonas putida GB-1] Length = 510 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 37/235 (15%), Positives = 84/235 (35%), Gaps = 34/235 (14%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIW-------- 84 + D + + + A +W + + L G G GK+ L + Sbjct: 179 FTFDTFVEGKSNQLARAA--AWQVADNPKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKN 236 Query: 85 --------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLF 127 +D ++ + + I + + +L++DI + + F Sbjct: 237 PNAKVVYLHSERFVADMVKALQLNAINEFKR--FYRSVDALLIDDIQFFARKERSQEEFF 294 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + +++T+ +P L SR V + P+ + +++K Sbjct: 295 HTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAD 354 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ + A +I QR+ ++ E + ++ + G IT L E LK+ Sbjct: 355 QAKVELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDL 409 >gi|88606838|ref|YP_505074.1| chromosomal replication initiation protein [Anaplasma phagocytophilum HZ] gi|88597901|gb|ABD43371.1| chromosomal replication initiator protein DnaA [Anaplasma phagocytophilum HZ] Length = 459 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 35/242 (14%), Positives = 87/242 (35%), Gaps = 28/242 (11%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIWS-- 85 P + D+ +V E A + + L G G GK+ L + + Sbjct: 122 PLDPRFTFDNFVVGKPNELAFAAARRVAESSEPIPGSNPLFLYGGVGLGKTHLMHAIAWY 181 Query: 86 --------------DKSRSTRFSNIAKSLDSILIDTR----KPVLLEDIDLLDFND---T 124 + ++ +S D +L + ++++D+ + D Sbjct: 182 ALGSPRKRKIAYLSAEKFMYQYVTALRSKDIMLFKEQFRSVDVLMVDDVQFISGKDSTQE 241 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + FH N++ L+++A P + SRL V I+ + ++ Sbjct: 242 EFFHTFNALIDQSKQLVISADRSPSDLDGVEDRIKSRLGWGLVADINETTFELRLGILQL 301 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 I + ++ ++ + ++ ++ E ++K+ + G +T LA+++L + + Sbjct: 302 KVEKMGIHVPDEVLEFLAKNIKSNIRELEGALNKVVAHSSLVGSSVTVELASDILSDLLR 361 Query: 245 CD 246 + Sbjct: 362 AN 363 >gi|81251104|gb|ABB69899.1| DNA replication initiator protein [Nitrosomonas sp. OZK11] Length = 458 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 43/247 (17%), Positives = 88/247 (35%), Gaps = 32/247 (12%) Query: 22 KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGPSGSGKS 78 KN QL G + D + A + A + P + + G G GK+ Sbjct: 117 KNNPSQL------NPGFTFDAFVTGKANQLARAGAIQVAERPGIAYNPLFIYGGVGLGKT 170 Query: 79 CLANIWS------DKSRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDL 118 L D R+ + K + ++ + +L++D+ Sbjct: 171 HLMQAIGNCVLDLDAGAKIRYVHAEKYVSDVVSAYQHKSFDKFKLYYHSLDLLLVDDVQF 230 Query: 119 LDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 + F+ N++ + +++T+ +P L SR V I P+ Sbjct: 231 FSGKNRTQEEFFYAFNALIEAHKQVIITSDCYPKEISGLEERLVSRFGWGLTVAIEPPEL 290 Query: 176 DFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235 + +++K +I +D+ A +I + + ++ E + ++ + G IT LA Sbjct: 291 EMRVAILLKKAHAEKIALDENTAFFIAKYIRSNVRELEGALKRILAFSRFTGHPITLDLA 350 Query: 236 AEVLKET 242 E LK+ Sbjct: 351 KEALKDL 357 >gi|325922759|ref|ZP_08184493.1| chromosomal replication initiator protein DnaA [Xanthomonas gardneri ATCC 19865] gi|325546755|gb|EGD17875.1| chromosomal replication initiator protein DnaA [Xanthomonas gardneri ATCC 19865] Length = 442 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 43/238 (18%), Positives = 84/238 (35%), Gaps = 27/238 (11%) Query: 35 CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS 90 + + + + A++ ++L G +G GK+ L + R Sbjct: 107 DSHYTFANFVEGRSNQLGLAAAIQAAQKPGDRAHNPLLLYGSTGLGKTHLMFAAGNALRQ 166 Query: 91 TR-------------FSNIAKSLDSILIDT-------RKPVLLEDIDLLDFND---TQLF 127 FS + ++L +D +L++DI D + F Sbjct: 167 ANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQQIDALLIDDIQFFAGKDRTQEEFF 226 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ +++T +P P L SRL V I PD + +++ Sbjct: 227 HTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLSVAIDPPDFETRAAIVLAKAR 286 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 +R I +A I ++M ++ E ++ + A G IT A E L++ + Sbjct: 287 ERGADIPDDVAFLIAKKMRSNVRDLEGALNTLVARANFTGRSITVEFAQETLRDLLRA 344 >gi|227876540|ref|ZP_03994651.1| chromosomal replication initiator protein DnaA [Mobiluncus mulieris ATCC 35243] gi|306817501|ref|ZP_07451245.1| chromosomal replication initiator protein DnaA [Mobiluncus mulieris ATCC 35239] gi|227842854|gb|EEJ53052.1| chromosomal replication initiator protein DnaA [Mobiluncus mulieris ATCC 35243] gi|304649725|gb|EFM47006.1| chromosomal replication initiator protein DnaA [Mobiluncus mulieris ATCC 35239] Length = 533 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 44/250 (17%), Positives = 92/250 (36%), Gaps = 28/250 (11%) Query: 20 QPKNKEEQLFFSFPRCLGISRDDLLVHSAI---EQAVRLIDSWPSWPSRVVILVGPSGSG 76 P Q+ + + + ++ S+ A + P+ + + G SG G Sbjct: 176 APIPASMQIDRNTGLNPMYTFESFVIGSSNSFTAAAAESVVVSPAQAYNPLFIYGGSGLG 235 Query: 77 KSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDI 116 K+ L + S++ + + IA L + V L++DI Sbjct: 236 KTHLLHAIGNYALELYPQAKVRYVSSEEFTNDFINAIATQTFPELQAKYREVDFLLIDDI 295 Query: 117 DLLDFNDTQL---FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 L + L FH N++H +++T+ P + SRL+ + I P Sbjct: 296 QFLQGKEQTLEEFFHTFNTLHTARKQVVITSDVPPKELKSFEERIKSRLEWGLLTDIQPP 355 Query: 174 DDDFLEKVIVKMFADRQIF-IDKKLAAYIVQRMERSLVFAEKLVDKMDN-LALSRGMGIT 231 + + ++ + A + D + YI + ++ E + ++ ALS G ++ Sbjct: 356 NLETRIAILRRKSAQENLQGYDDAVLEYIASNISSNIRELEGALLRVTAYAALSGGGSVS 415 Query: 232 RSLAAEVLKE 241 A E+L++ Sbjct: 416 LDTAKEILRD 425 >gi|116491819|ref|YP_803554.1| chromosomal replication initiation protein [Pediococcus pentosaceus ATCC 25745] gi|122266717|sp|Q03I60|DNAA_PEDPA RecName: Full=Chromosomal replication initiator protein DnaA gi|116101969|gb|ABJ67112.1| DNA replication ATPase initiation [Pediococcus pentosaceus ATCC 25745] Length = 446 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 39/253 (15%), Positives = 90/253 (35%), Gaps = 32/253 (12%) Query: 16 QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGP 72 +K + ++ QL + D ++ S + A + P + G Sbjct: 98 KKETKASTEDTQL------NSRYTFDTFVIGSGNQMAHAAAMAVSDEPGVLYNPLFFYGG 151 Query: 73 SGSGKSCLANIWSDK-------SRSTRFSNIAKSLDSILIDTRK-------------PVL 112 G GK+ L + + +R ++ A + D I + +L Sbjct: 152 VGLGKTHLMHAIGHQLLENDPKTRVKYVTSEAFTNDFINSIQKNKTEEFHEKYRNVDLLL 211 Query: 113 LEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 ++D+ + + FH +++ +++T+ P L SR K + Sbjct: 212 VDDVQFFADKEATQEEFFHTFEALYNAQKQIVLTSDRLPNEIPKLQERLVSRFKWGLSID 271 Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229 I+ P+ + ++ + + I + YI R++ ++ E + ++ A + Sbjct: 272 ITPPNLETRIAILREKAQADNVEIPDETLEYIANRIDSNIRELEGAMARIQAYAKLQNAA 331 Query: 230 ITRSLAAEVLKET 242 IT LA++ L+ Sbjct: 332 ITTDLASDALRSL 344 >gi|92112137|ref|YP_572065.1| chromosomal replication initiation protein [Chromohalobacter salexigens DSM 3043] gi|123084264|sp|Q1R1P2|DNAA_CHRSD RecName: Full=Chromosomal replication initiator protein DnaA gi|91795227|gb|ABE57366.1| chromosomal replication initiator protein DnaA [Chromohalobacter salexigens DSM 3043] Length = 495 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 37/234 (15%), Positives = 79/234 (33%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91 + + + + + A P + L G G GK+ L + + Sbjct: 161 NPNFTFETFVEGKSNQLARAASRQVAENPGGAYNPLFLYGGVGLGKTHLMHAVGNHLAGQ 220 Query: 92 RFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFND---TQLFH 128 R + L S + +L++DI + + FH Sbjct: 221 RENAKVVYLHSERFVADMVKALQLNAINDFKRFYRSVDALLIDDIQFFAGKERSQEEFFH 280 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++ + +++T+ +P L SR V I P+ + +++K Sbjct: 281 TFNALLEGGQQMILTSDRYPKEISGVEERLKSRFGWGLTVAIEPPELETRVAILMKKADQ 340 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ + A +I Q++ ++ E + K+ + G IT+ E LK+ Sbjct: 341 AKVDLPHDAAFFIAQKIRSNVRELEGALKKVIADSHFMGKPITQDFIRESLKDL 394 >gi|166709896|ref|ZP_02241103.1| chromosomal replication initiation protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 442 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 44/244 (18%), Positives = 87/244 (35%), Gaps = 27/244 (11%) Query: 29 FFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 F+ + + + + A++ ++L G +G GK+ L Sbjct: 101 PFAGNLDSHYTFANFVEGRSNQLGLAAAIQAAQKPGDRAHNPLLLYGSTGLGKTHLMFAA 160 Query: 85 SDKSRSTR-------------FSNIAKSLDSILIDT-------RKPVLLEDIDLLDFND- 123 + R + FS + ++L +D +L++DI D Sbjct: 161 GNALRQAKPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQQIDALLIDDIQFFAGKDR 220 Query: 124 --TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 + FH N++ +++T +P P L SRL V I PD + + Sbjct: 221 TQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLSVAIDPPDFETRAAI 280 Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++ +R I +A I ++M ++ E ++ + A G IT A E L++ Sbjct: 281 VLAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARANFTGRLITVEFAQETLRD 340 Query: 242 TQQC 245 + Sbjct: 341 LLRA 344 >gi|312128810|ref|YP_003996150.1| chromosomal replication initiator protein dnaa [Leadbetterella byssophila DSM 17132] gi|311905356|gb|ADQ15797.1| chromosomal replication initiator protein DnaA [Leadbetterella byssophila DSM 17132] Length = 465 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 48/270 (17%), Positives = 94/270 (34%), Gaps = 37/270 (13%) Query: 13 PDKQKNDQPKNKEE-----QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS--- 64 P + PKN E + F ++ + S A + PS Sbjct: 102 PKEDSRVIPKNPFEIKTSSDIIFDSQLNKNYRFENYVEGSCNRLARAASVAVAQKPSVTA 161 Query: 65 -RVVILVGPSGSGKSCLANIW------------------SDKSRSTRFSNIAKSLDSILI 105 +++ G G GK+ L S+K S + I + + Sbjct: 162 FNPLMIYGDVGLGKTHLVQAIGNYIEDQPGNNKLVLYVSSEKFTSQFINAIRDNSLQDFM 221 Query: 106 DTR---KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC 159 + ++++DI L + FHI N +HQ ++MT+ P L Sbjct: 222 NFYMMVDVLIIDDIQFLAGKEKTQETFFHIFNHLHQSGKQIVMTSDRPPRELSGMEDRLL 281 Query: 160 SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 SR K I +PD + +I A + +D ++ Y+ ++ ++ E +++ + Sbjct: 282 SRFKWGLTTDIQIPDLETRMAIIQNKLATEKAEMDMEVVEYLANCVDSNVRELEGVLNSL 341 Query: 220 DNLALSRGMGITRSLA----AEVLKETQQC 245 + I LA +++E+Q+ Sbjct: 342 IVDSALLQRKIDIELAKYRIKSLVEESQKA 371 >gi|307699978|ref|ZP_07637029.1| chromosomal replication initiator protein DnaA [Mobiluncus mulieris FB024-16] gi|307615016|gb|EFN94234.1| chromosomal replication initiator protein DnaA [Mobiluncus mulieris FB024-16] Length = 516 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 44/250 (17%), Positives = 92/250 (36%), Gaps = 28/250 (11%) Query: 20 QPKNKEEQLFFSFPRCLGISRDDLLVHSAI---EQAVRLIDSWPSWPSRVVILVGPSGSG 76 P Q+ + + + ++ S+ A + P+ + + G SG G Sbjct: 159 APIPASMQIDRNTGLNPMYTFESFVIGSSNSFTAAAAESVVVSPAQAYNPLFIYGGSGLG 218 Query: 77 KSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDI 116 K+ L + S++ + + IA L + V L++DI Sbjct: 219 KTHLLHAIGNYALELYPQAKVRYVSSEEFTNDFINAIATQTFPELQAKYREVDFLLIDDI 278 Query: 117 DLLDFNDTQL---FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 L + L FH N++H +++T+ P + SRL+ + I P Sbjct: 279 QFLQGKEQTLEEFFHTFNTLHTARKQVVITSDVPPKELKSFEERIKSRLEWGLLTDIQPP 338 Query: 174 DDDFLEKVIVKMFADRQIF-IDKKLAAYIVQRMERSLVFAEKLVDKMDN-LALSRGMGIT 231 + + ++ + A + D + YI + ++ E + ++ ALS G ++ Sbjct: 339 NLETRIAILRRKSAQENLQGYDDAVLEYIASNISSNIRELEGALLRVTAYAALSGGGSVS 398 Query: 232 RSLAAEVLKE 241 A E+L++ Sbjct: 399 LDTAKEILRD 408 >gi|282853039|ref|ZP_06262376.1| chromosomal replication initiator protein DnaA [Propionibacterium acnes J139] gi|282582492|gb|EFB87872.1| chromosomal replication initiator protein DnaA [Propionibacterium acnes J139] Length = 500 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 85/234 (36%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91 + D ++ ++ A + P + +++ G SG GK+ L + S Sbjct: 164 NPKYTFDSFVIGASNRFAHAAAVAVAEAPGKSYNPLLIYGGSGLGKTHLLHAIGRYVMSY 223 Query: 92 R--FSNIAKSLDSILIDTRKPV------------------LLEDIDLLDF---NDTQLFH 128 S + + D + L++DI L + FH Sbjct: 224 YDNVKVKYVSTEELTNDFINAIGTNRTTEFRRSYRDVDVLLVDDIQFLQSKIQTQEEFFH 283 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H ++MT+ P P L SR + + I PD + ++ + A Sbjct: 284 TFNTLHNAQKQIVMTSDRPPKLLEALEPRLRSRFEWGLLTDIQPPDLETRIAILRRKVAA 343 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +I ++ + +I R++ ++ E + ++ A + SLA VLK+ Sbjct: 344 EKITVEPDVLEFIASRIQTNIRELEGALIRVTAFASLNQQSVDISLAEVVLKDL 397 >gi|291285948|ref|YP_003502764.1| chromosomal replication initiator protein DnaA [Denitrovibrio acetiphilus DSM 12809] gi|290883108|gb|ADD66808.1| chromosomal replication initiator protein DnaA [Denitrovibrio acetiphilus DSM 12809] Length = 446 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 32/231 (13%), Positives = 84/231 (36%), Gaps = 27/231 (11%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWP---SRVVILVGPSGSGKSCLANIWSDK------- 87 + + + + E + ++ + + G SG GK+ L + ++ Sbjct: 112 YTFANFVAGGSNEFSFSACEAVSEGQFMQYNPLFIYGGSGLGKTHLMHAVGNRILEKFPK 171 Query: 88 ------SRSTRFSNIAKSLDSILIDTRKP-------VLLEDIDLLDFND---TQLFHIIN 131 + T +++ SL + ++ + +L +D+ L + F+ N Sbjct: 172 MKVLYITSETFTNDMINSLRTRKMEEFQARYRTIDVLLFDDVQFLSGKQRSTEEFFNTFN 231 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 +++ +++T+ P L SR + I P + +++K + Sbjct: 232 ALYDNQKQIIITSDKTPAEIPDMEDRLKSRFAWGLIADIQPPSTEEKTAILMKRAEFMGL 291 Query: 192 FIDKKLAAYIVQRM-ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + ++A +I + M ++ + ++ A G+T LA + L + Sbjct: 292 KLPGEVALFIAENMITENVRELMGALVRLSAFASFHKRGLTIDLAKDALDK 342 >gi|256851674|ref|ZP_05557062.1| chromosomal replication initiator protein DnaA [Lactobacillus jensenii 27-2-CHN] gi|260661609|ref|ZP_05862521.1| chromosomal replication initiator protein DnaA [Lactobacillus jensenii 115-3-CHN] gi|256615632|gb|EEU20821.1| chromosomal replication initiator protein DnaA [Lactobacillus jensenii 27-2-CHN] gi|260547666|gb|EEX23644.1| chromosomal replication initiator protein DnaA [Lactobacillus jensenii 115-3-CHN] Length = 455 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 37/238 (15%), Positives = 79/238 (33%), Gaps = 26/238 (10%) Query: 31 SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW--- 84 + + D + + A + P + + G G GK+ L Sbjct: 116 NLQLNEKYTFDTFVQGEGNKLAEGAALAVADNPGSFYNPLFIFGGVGLGKTHLMQAIGHQ 175 Query: 85 --SDKSRSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLLDFND---T 124 ++ + +++ + I+ T +L++DI + Sbjct: 176 MLCERPNAKVVYIQSETFVNDFINSIKNKTQDEFREKYRTADLLLVDDIQFFAKKEGIQE 235 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + FH +++ ++MT+ P L SR V+I+ PD + ++ K Sbjct: 236 EFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFAWGLQVEITPPDLETRIAILRK 295 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + ID YI ++ ++ E + K+ A I +LA + L + Sbjct: 296 KAESEGLVIDDDTLDYIASQVSTNIRELEGALVKVQAHATIEKADINVNLARDALTDL 353 >gi|282934242|ref|ZP_06339519.1| chromosomal replication initiator protein DnaA [Lactobacillus jensenii 208-1] gi|297205283|ref|ZP_06922679.1| ATPase [Lactobacillus jensenii JV-V16] gi|281301716|gb|EFA93983.1| chromosomal replication initiator protein DnaA [Lactobacillus jensenii 208-1] gi|297149861|gb|EFH30158.1| ATPase [Lactobacillus jensenii JV-V16] Length = 455 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 37/238 (15%), Positives = 79/238 (33%), Gaps = 26/238 (10%) Query: 31 SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW--- 84 + + D + + A + P + + G G GK+ L Sbjct: 116 NLQLNEKYTFDTFVQGEGNKLAEGAALAVADNPGSFYNPLFIFGGVGLGKTHLMQAIGHQ 175 Query: 85 --SDKSRSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLLDFND---T 124 ++ + +++ + I+ T +L++DI + Sbjct: 176 MLCERPNAKVVYIQSETFVNDFINSIKNKTQDEFREKYRTADLLLVDDIQFFAKKEGIQE 235 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + FH +++ ++MT+ P L SR V+I+ PD + ++ K Sbjct: 236 EFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFAWGLQVEITPPDLETRIAILRK 295 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + ID YI ++ ++ E + K+ A I +LA + L + Sbjct: 296 KAESEGLVIDDDTLDYIASQVSTNIRELEGALVKVQAHATIEKADINVNLARDALTDL 353 >gi|295694687|ref|YP_003587925.1| chromosomal replication initiator protein DnaA [Bacillus tusciae DSM 2912] gi|295410289|gb|ADG04781.1| chromosomal replication initiator protein DnaA [Bacillus tusciae DSM 2912] Length = 450 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 38/250 (15%), Positives = 85/250 (34%), Gaps = 32/250 (12%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSC 79 QL + + +V A + PS + + G G GK+ Sbjct: 108 FPPPQLS------SKYTFESFVVGENNRFAHAACLAVAEAPSLSYNPLFIYGGVGLGKTH 161 Query: 80 LANIW-----------------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLL 119 L +++ + + I + + V L++D+ L Sbjct: 162 LMQAIGHYVLKHHPEKRVVYISTEQFTNEFINAILYKTVPDFRNRYRSVDILLVDDVQFL 221 Query: 120 DFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 + + FH N++H +++++ P L SR ++ + I PD + Sbjct: 222 AGKEQTQEEFFHTFNTLHLEGKQIVLSSDRPPKEIPTLEDRLRSRFESGLITDIQPPDFE 281 Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236 ++ K + I + + ++I ++ ++ E + ++ + + LAA Sbjct: 282 TRVAILRKKAKAEGLDIGEDVISFIASKVNTNIRELEGALIRIVAYSSVVNQDMNSELAA 341 Query: 237 EVLKETQQCD 246 E LK+ D Sbjct: 342 EALKDIINAD 351 >gi|315037231|ref|YP_004030799.1| chromosomal replication initiation protein [Lactobacillus amylovorus GRL 1112] gi|325955722|ref|YP_004286332.1| chromosomal replication initiation protein [Lactobacillus acidophilus 30SC] gi|312275364|gb|ADQ58004.1| chromosomal replication initiation protein [Lactobacillus amylovorus GRL 1112] gi|325332287|gb|ADZ06195.1| chromosomal replication initiation protein [Lactobacillus acidophilus 30SC] gi|327182550|gb|AEA30997.1| chromosomal replication initiation protein [Lactobacillus amylovorus GRL 1118] Length = 455 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 43/254 (16%), Positives = 88/254 (34%), Gaps = 27/254 (10%) Query: 13 PDKQKNDQPKNKEEQ-LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VI 68 P QP+N+E+Q + D+ + + A + P + Sbjct: 97 PQHDIRVQPRNREQQEFTKDLKLNEKYTFDNFVQGEGNKLAAGAALAVADSPGSFYNPLF 156 Query: 69 LVGPSGSGKSCLANIWSDKS-----RSTRFSNIAKSLDSILIDTRK-------------- 109 + G G GK+ L + + +++ + I++ K Sbjct: 157 IFGGVGLGKTHLMQAIGHQMLLERPNAKVVYIQSETFVNDFINSIKNKTQDQFREKYRTC 216 Query: 110 -PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 +L++DI + + FH +++ ++MT+ P L SR Sbjct: 217 DLLLVDDIQFFAKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFTWG 276 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 V+I+ PD + ++ + + ID YI +++ ++ E + K+ A Sbjct: 277 LQVEITPPDLETRIAILRRKAESEGLTIDDNTLDYIASQVDTNIRELEGALVKVQAYATI 336 Query: 226 RGMGITRSLAAEVL 239 I +LA E L Sbjct: 337 EKADIDVNLAREAL 350 >gi|323341100|ref|ZP_08081348.1| replication initiation protein DnaA [Lactobacillus ruminis ATCC 25644] gi|323091521|gb|EFZ34145.1| replication initiation protein DnaA [Lactobacillus ruminis ATCC 25644] Length = 461 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 38/201 (18%), Positives = 78/201 (38%), Gaps = 23/201 (11%) Query: 67 VILVGPSGSGKSCLANIW-----SDKSRSTRFSNIAKSLDSILIDTRKP----------- 110 + + G G GK+ L + D + +++ + I++ K Sbjct: 161 LFIYGGVGLGKTHLMHAIGNRLLQDNPNARIKYVSSEAFANDFINSIKSKNSEAFRQKYR 220 Query: 111 ----VLLEDID---LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 +L++DI D + FH N+++ +++T+ P L SR + Sbjct: 221 NLDLLLVDDIQFFAEKDGTQEEFFHTFNALYDDKKQIVLTSDRLPNEIPKLQKRLVSRFR 280 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 V I+ PD + ++ K + + +YI +++ ++ E + ++ A Sbjct: 281 WGLSVDITPPDFETRTAILRKKAESDFLDVSDDALSYIAGKIDSNIRELEGALMRVSAYA 340 Query: 224 LSRGMGITRSLAAEVLKETQQ 244 + IT SLAAE L + Q Sbjct: 341 KLKHQRITTSLAAEALSDLNQ 361 >gi|58336355|ref|YP_192940.1| chromosomal replication initiation protein [Lactobacillus acidophilus NCFM] gi|71151800|sp|Q5FN15|DNAA_LACAC RecName: Full=Chromosomal replication initiator protein DnaA gi|58253672|gb|AAV41909.1| chromosomal replication initiator protein [Lactobacillus acidophilus NCFM] Length = 455 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 37/251 (14%), Positives = 84/251 (33%), Gaps = 26/251 (10%) Query: 15 KQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVG 71 + + + + + D+ + + A + P + + G Sbjct: 100 NLQTTPTRAPQREFAKDLKLNEKYTFDNFVQGEGNKLAAGAALAVADSPGSFYNPLFIFG 159 Query: 72 PSGSGKSCLANIW-----SDKSRSTRFSNIAKSLDSILIDTRK---------------PV 111 G GK+ L ++ + +++ + I++ K + Sbjct: 160 GVGLGKTHLMQAIGHQMLVERPNAKVVYIQSETFVNDFINSIKNKTQDKFREKYRTCDLL 219 Query: 112 LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168 L++DI + + FH +++ ++MT+ P L SR V Sbjct: 220 LVDDIQFFAKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFTWGLQV 279 Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228 +I+ PD + ++ + + ID YI +++ ++ E + K+ A Sbjct: 280 EITPPDLETRIAILRRKAEAEGLTIDDDTLDYIASQVDTNIRELEGALVKVQAYATIEKA 339 Query: 229 GITRSLAAEVL 239 I +LA E L Sbjct: 340 DIDINLAREAL 350 >gi|227902594|ref|ZP_04020399.1| DNA-directed DNA replication initiator protein [Lactobacillus acidophilus ATCC 4796] gi|227869683|gb|EEJ77104.1| DNA-directed DNA replication initiator protein [Lactobacillus acidophilus ATCC 4796] Length = 465 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 37/251 (14%), Positives = 84/251 (33%), Gaps = 26/251 (10%) Query: 15 KQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVG 71 + + + + + D+ + + A + P + + G Sbjct: 110 NLQTTPTRAPQREFAKDLKLNEKYTFDNFVQGEGNKLAAGAALAVADSPGSFYNPLFIFG 169 Query: 72 PSGSGKSCLANIW-----SDKSRSTRFSNIAKSLDSILIDTRK---------------PV 111 G GK+ L ++ + +++ + I++ K + Sbjct: 170 GVGLGKTHLMQAIGHQMLVERPNAKVVYIQSETFVNDFINSIKNKTQDKFREKYRTCDLL 229 Query: 112 LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168 L++DI + + FH +++ ++MT+ P L SR V Sbjct: 230 LVDDIQFFAKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFTWGLQV 289 Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228 +I+ PD + ++ + + ID YI +++ ++ E + K+ A Sbjct: 290 EITPPDLETRIAILRRKAEAEGLTIDDDTLDYIASQVDTNIRELEGALVKVQAYATIEKA 349 Query: 229 GITRSLAAEVL 239 I +LA E L Sbjct: 350 DIDINLAREAL 360 >gi|251794037|ref|YP_003008768.1| chromosomal replication initiation protein [Paenibacillus sp. JDR-2] gi|247541663|gb|ACS98681.1| chromosomal replication initiator protein DnaA [Paenibacillus sp. JDR-2] Length = 450 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 45/243 (18%), Positives = 88/243 (36%), Gaps = 34/243 (13%) Query: 29 FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW- 84 F+ + D ++ + A + P++ + L G G GK+ L + Sbjct: 107 TFNHMLNPKYTFDTFVIGANNRFAHAASLAVAEAPAKAYNPLFLYGGVGLGKTHLMHAIG 166 Query: 85 ----------------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND-- 123 S+K + + I + + + + L++DI L D Sbjct: 167 HYIMDHNPSTKIMYISSEKFTNEFINAIRDNRGESFRNKYRNIDVLLIDDIQFLAGKDGT 226 Query: 124 -TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 + FH N++H+ +++++ P L SR + + I PD + ++ Sbjct: 227 QEEFFHTFNALHEERKQIVISSDRTPKEIPTLEERLRSRFEWGLITDIQAPDLETRIAIL 286 Query: 183 VKMFADRQIFIDKKLAAYIVQRME---RSLV-FAEKLVDKMDNLALSRGMGITRSLAAEV 238 K + I + YI +++ R L ++V +L IT LAAE Sbjct: 287 RKKAKAENLDIPNEAMVYIANQIDTNIRELEGALIRVVA---YSSLINQ-DITSHLAAEA 342 Query: 239 LKE 241 LK+ Sbjct: 343 LKD 345 >gi|170719188|ref|YP_001746876.1| chromosomal replication initiation protein [Pseudomonas putida W619] gi|226735835|sp|B1J3Y2|DNAA_PSEPW RecName: Full=Chromosomal replication initiator protein DnaA gi|169757191|gb|ACA70507.1| chromosomal replication initiator protein DnaA [Pseudomonas putida W619] Length = 511 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 36/235 (15%), Positives = 84/235 (35%), Gaps = 34/235 (14%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIW-------- 84 + + + + + A +W + + L G G GK+ L + Sbjct: 180 FTFETFVEGKSNQLARAA--AWQVADNPKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKN 237 Query: 85 --------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLF 127 +D ++ + + I + + +L++DI + + F Sbjct: 238 PNAKVVYLHSERFVADMVKALQLNAINEFKR--FYRSVDALLIDDIQFFARKERSQEEFF 295 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + +++T+ +P L SR V + P+ + +++K Sbjct: 296 HTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAD 355 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ + A +I QR+ ++ E + ++ + G IT L E LK+ Sbjct: 356 QAKVELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDL 410 >gi|237749314|ref|ZP_04579794.1| chromosomal replication initiator protein dnaA [Oxalobacter formigenes OXCC13] gi|229380676|gb|EEO30767.1| chromosomal replication initiator protein dnaA [Oxalobacter formigenes OXCC13] Length = 459 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 36/231 (15%), Positives = 84/231 (36%), Gaps = 26/231 (11%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDKSRS---- 90 ++ D + A + A + P + L G G GK+ L + ++ + Sbjct: 128 MTFDSFVTGKANQLARAAAIQVANNPGVSYNPLYLFGGVGLGKTHLIHAIGNQVLADTPS 187 Query: 91 --TRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFHIIN 131 R+ + + + ++ + +L++DI + F+ Sbjct: 188 AKIRYIHAEQYVRDVVTAYQRKGFDDFKRYYHSLDMLLIDDIQFFSGKSRTQEEFFYAFE 247 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 ++ +++T+ T+P L SR + V I P+ + +++K I Sbjct: 248 ALIAARKQIIITSDTYPKEISGMDDRLTSRFDSGLTVAIEPPELEMRVAILIKKACQEGI 307 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + +A ++ + + ++ E + K+ + G IT L E LK+ Sbjct: 308 QLSDDVAFFVAKHLRSNVRELEGALRKILAFSRFHGRDITIELTKEALKDL 358 >gi|261368844|ref|ZP_05981727.1| ATPase [Subdoligranulum variabile DSM 15176] gi|282569116|gb|EFB74651.1| ATPase [Subdoligranulum variabile DSM 15176] Length = 436 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 34/236 (14%), Positives = 83/236 (35%), Gaps = 30/236 (12%) Query: 38 ISRDDLLVHSAIEQAVRLIDSW---PSWPSRVVILVGPSGSGKSCLANIW---------- 84 + ++ + + + A + PS + + GPSG GK+ L N Sbjct: 105 FTFENFIKGPSNQFAYAAAQAVAANPSGAYNPLFIYGPSGLGKTHLLNAIQIEIKKNHPD 164 Query: 85 -------SDKSRSTRFSNIAKSLDSIL---IDTRKPVLLEDIDLLDFND---TQLFHIIN 131 + + + + + +L++DI L + + FH N Sbjct: 165 FNIVYVDCEMFTNEIITAVKTATTEQFRQKYRQADVLLIDDIQFLAGKESTQEEFFHTFN 224 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 ++H +++ + L +R + I PD + ++ + + Sbjct: 225 TLHNDGRQIVIASDRPAKEIKSLEERLRTRFEWGLTADIQPPDFETRVAIVKRKAELLNL 284 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG----ITRSLAAEVLKETQ 243 + +A YI +++++ E V K++ + G+ +T + + L ++Q Sbjct: 285 DLPDDVAEYIANHLKQNIRQLEGAVKKLNAYYMLEGIAPCIGVTTTAIKDTLNDSQ 340 >gi|71066177|ref|YP_264904.1| regulatory inactivation of DnaA Hda protein [Psychrobacter arcticus 273-4] gi|71039162|gb|AAZ19470.1| regulatory inactivation of DnaA Hda protein [Psychrobacter arcticus 273-4] Length = 270 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 40/234 (17%), Positives = 86/234 (36%), Gaps = 15/234 (6%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 E QL + S D + + + L G +GKS L + Sbjct: 3 EAQLSLNLDIKHDASLSDF-SGPGWMSIIDAVRQLHVGLIGQLYLFGSPATGKSHLLSAI 61 Query: 85 SDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFHIINS 132 + S I SL+ ++ ++ + ++D+++++ N LFH+IN Sbjct: 62 CESFIEMDKSAICLSLNELIHTDVNVLSSLENFSLIAIDDLEVIEQNSQWQEALFHLINR 121 Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL-PDDDFLEKVIVKMFADRQI 191 + LL A L DL +RL A K+ D E ++ + R Sbjct: 122 SREGQRQLLFAANKPASELPFQLRDLLTRLAQAPSFKVPTGHDLADREALLQSILRRRGW 181 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMD-NLALSRGMGITRSLAAEVLKETQQ 244 D+++A Y++ + ++++ + + I++++ + L+ + Sbjct: 182 QFDERIANYLLTEGPHRIGAMMEVLNYIQPMFSNLGRSNISKAVIGDALRTIDE 235 >gi|21229479|ref|NP_635396.1| chromosomal replication initiation protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|188989397|ref|YP_001901407.1| chromosomal replication initiation protein [Xanthomonas campestris pv. campestris str. B100] gi|38257667|sp|Q8PEH5|DNAA_XANCP RecName: Full=Chromosomal replication initiator protein DnaA gi|226735863|sp|B0RLI8|DNAA_XANCB RecName: Full=Chromosomal replication initiator protein DnaA gi|21110939|gb|AAM39320.1| chromosomal replication initiator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|167731157|emb|CAP49329.1| chromosomal replication initiator protein [Xanthomonas campestris pv. campestris] Length = 442 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 43/238 (18%), Positives = 84/238 (35%), Gaps = 27/238 (11%) Query: 35 CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS 90 + + + + A++ ++L G +G GK+ L + R Sbjct: 107 DSHYTFANFVEGRSNQLGLAAAIQAAQKPGDRAHNPLLLYGSTGLGKTHLMFAAGNALRQ 166 Query: 91 TR-------------FSNIAKSLDSILIDT-------RKPVLLEDIDLLDFND---TQLF 127 FS + ++L +D +L++DI D + F Sbjct: 167 ANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQQIDALLIDDIQFFAGKDRTQEEFF 226 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ +++T +P P L SRL V I PD + +++ Sbjct: 227 HTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLSVAIDPPDFETRAAIVLAKAR 286 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 +R I +A I ++M ++ E ++ + A G IT A E L++ + Sbjct: 287 ERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARANFTGRSITVEFAQETLRDLLRA 344 >gi|325528073|gb|EGD05285.1| chromosomal replication initiation protein [Burkholderia sp. TJI49] Length = 365 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 87/234 (37%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWS-----D 86 ++ D+ + A + A P + L G G GK+ L + D Sbjct: 31 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 90 Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128 K+ + A+ S ++ + +D +DLL +D + F+ Sbjct: 91 KAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 150 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + +++T+ T+P L SR + V I P+ + ++++ Sbjct: 151 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 210 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + +A ++ + + ++ E + K+ + G I+ L E LK+ Sbjct: 211 EGVNLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREISIELTKEALKDL 264 >gi|21326649|gb|AAL30089.1| chromosomal replication initiator protein DnaA [Xanthomonas campestris pv. campestris] Length = 442 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 43/238 (18%), Positives = 84/238 (35%), Gaps = 27/238 (11%) Query: 35 CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS 90 + + + + A++ ++L G +G GK+ L + R Sbjct: 107 DSHYTFANFVEGRSNQLGLAAAIQAAQKPGDRAHNPLLLYGSTGLGKTHLMFAAGNALRQ 166 Query: 91 TR-------------FSNIAKSLDSILIDT-------RKPVLLEDIDLLDFND---TQLF 127 FS + ++L +D +L++DI D + F Sbjct: 167 ANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQQIDALLIDDIQFFAGKDRTQEEFF 226 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ +++T +P P L SRL V I PD + +++ Sbjct: 227 HTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLSVAIDPPDFETRAAIVLAKAR 286 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 +R I +A I ++M ++ E ++ + A G IT A E L++ + Sbjct: 287 ERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARANFTGRSITVEFAQETLRDLLRA 344 >gi|313887738|ref|ZP_07821420.1| chromosomal replication initiator protein DnaA [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846347|gb|EFR33726.1| chromosomal replication initiator protein DnaA [Peptoniphilus harei ACS-146-V-Sch2b] Length = 449 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 37/237 (15%), Positives = 88/237 (37%), Gaps = 30/237 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRLI-------DSWPSWPSRVVILVGPSGSGKSCLANIW--- 84 + + +V + E A ++ + S + + G G GK+ L + Sbjct: 110 NPKYTFETFVVGKSNEFAHAAALAVSENYENPQNAFSNPLFIYGGVGLGKTHLMHAIGHF 169 Query: 85 --------------SDKSRSTRFSNIAKSLDSILIDTRK---PVLLEDIDLLDFND---T 124 S++ + ++I + + + + +L++DI + D Sbjct: 170 VLEQDPTKKILYVTSEQFTNELINSIQTNKNEEFRNKYRKVDLLLIDDIQFIADKDRTQE 229 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + FH N +H+ + +++T+ P L SR VV I PD + ++ K Sbjct: 230 EFFHTFNELHEQNKQIVLTSDKPPKDIKSLEERLISRFAWGLVVDIGPPDLETRIAILRK 289 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + +++ +I + + ++ E + ++ + I+ AA VL++ Sbjct: 290 KADSEGFEVSQEVMTFIAENVRSNIRELEGALSRVMAYSKLTDSDISVESAAIVLRD 346 >gi|167900712|ref|ZP_02487917.1| chromosomal replication initiation protein [Burkholderia pseudomallei NCTC 13177] Length = 408 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 85/234 (36%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87 ++ D+ + A + A P + L G G GK+ L + ++ Sbjct: 74 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 133 Query: 88 --SRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128 R+ + + + ++ + +L++DI + F+ Sbjct: 134 KPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 193 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + +++T+ T+P L SR + V I P+ + ++++ Sbjct: 194 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 253 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + +A ++ + + ++ E + K+ + G IT L E LK+ Sbjct: 254 EGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDL 307 >gi|225848588|ref|YP_002728751.1| chromosomal replication initiator protein DnaA [Sulfurihydrogenibium azorense Az-Fu1] gi|225644495|gb|ACN99545.1| chromosomal replication initiator protein DnaA [Sulfurihydrogenibium azorense Az-Fu1] Length = 442 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 41/239 (17%), Positives = 97/239 (40%), Gaps = 26/239 (10%) Query: 32 FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWS--- 85 + +L++ + + A + + P ++ + + G G GK+ + + + Sbjct: 103 LTLNPKFTFKNLVIGNHNKVAYQSCIAVAENPGKIFNPLFIYGDVGLGKTHMLHATAYHL 162 Query: 86 ---DKSRSTRFSNIAKSLDSILIDTRKPVLLE------DIDLLDFNDTQLF--------- 127 +++ ++ + +K ++LE D+DLL +D Q Sbjct: 163 LKRNQNAKIIYTTADTFASEMFSYIQKGMILEFRKRYKDVDLLLMDDIQFLVGKERTQIE 222 Query: 128 --HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 HI N ++ +++++ P S L SR + +V+I+ PD + +I K Sbjct: 223 FYHIFNILYTAGKQIILSSDQPPNSLKGIEKRLISRFNSGLIVEITKPDLETKVNIINKK 282 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 ++ I I +++A ++ + + S+ E V ++ G + +A VLK+ + Sbjct: 283 ASEYGIEIPREVAIFLGKIVNSSVRELEGAVKRLKAYCDIMGKPLNLEVAKTVLKDVVE 341 >gi|257091664|ref|YP_003165305.1| chromosomal replication initiation protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044188|gb|ACV33376.1| chromosomal replication initiator protein DnaA [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 473 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 41/253 (16%), Positives = 95/253 (37%), Gaps = 33/253 (13%) Query: 17 KNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLID----SWPSWPSRVVILVGP 72 D+P ++ +L + ++L+V A + A S + + G Sbjct: 126 DRDRPSYEKTRLI------PTFTFENLIVGKANDLARAASRQVAISPGEATYNPLFIYGG 179 Query: 73 SGSGKSCLANIWSDK------SRSTRFSNIAKSLDSILID--------------TRKPVL 112 +G GK+ L + + R R+ + ++ + +L Sbjct: 180 AGLGKTHLIHAIGNHILECFPDRIVRYVHAEDYYSDVVRAYQQKSFDVFKRYYRSLDVLL 239 Query: 113 LEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 L+D+ + + F + N++ + L++++ T+P + L +R V+ Sbjct: 240 LDDVHFFNGKNRTQEEFFFVFNALSEAKKQLVISSDTYPKNISGLEDRLVTRFDWGLTVQ 299 Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229 I P+ + ++ K + +D ++A Y+ + + ++ E + K+ + G Sbjct: 300 IEPPETEMRVAILKKKAELEGVLLDDEVAFYVAKHLRSNVRELEGALKKVLAYSAFHGRE 359 Query: 230 ITRSLAAEVLKET 242 I LA E LK+ Sbjct: 360 IALDLAKEALKDV 372 >gi|167916970|ref|ZP_02504061.1| chromosomal replication initiation protein [Burkholderia pseudomallei BCC215] gi|238561943|ref|ZP_00441124.2| chromosomal replication initiator protein DnaA [Burkholderia mallei GB8 horse 4] gi|238523506|gb|EEP86944.1| chromosomal replication initiator protein DnaA [Burkholderia mallei GB8 horse 4] Length = 406 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 85/234 (36%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87 ++ D+ + A + A P + L G G GK+ L + ++ Sbjct: 72 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 131 Query: 88 --SRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128 R+ + + + ++ + +L++DI + F+ Sbjct: 132 KPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 191 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + +++T+ T+P L SR + V I P+ + ++++ Sbjct: 192 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 251 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + +A ++ + + ++ E + K+ + G IT L E LK+ Sbjct: 252 EGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDL 305 >gi|167892200|ref|ZP_02479602.1| chromosomal replication initiation protein [Burkholderia pseudomallei 7894] Length = 397 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 85/234 (36%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87 ++ D+ + A + A P + L G G GK+ L + ++ Sbjct: 63 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 122 Query: 88 --SRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128 R+ + + + ++ + +L++DI + F+ Sbjct: 123 KPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 182 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + +++T+ T+P L SR + V I P+ + ++++ Sbjct: 183 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 242 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + +A ++ + + ++ E + K+ + G IT L E LK+ Sbjct: 243 EGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDL 296 >gi|167843721|ref|ZP_02469229.1| chromosomal replication initiation protein [Burkholderia pseudomallei B7210] gi|167908929|ref|ZP_02496020.1| chromosomal replication initiation protein [Burkholderia pseudomallei 112] Length = 389 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 85/234 (36%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87 ++ D+ + A + A P + L G G GK+ L + ++ Sbjct: 55 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 114 Query: 88 --SRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128 R+ + + + ++ + +L++DI + F+ Sbjct: 115 KPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 174 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + +++T+ T+P L SR + V I P+ + ++++ Sbjct: 175 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 234 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + +A ++ + + ++ E + K+ + G IT L E LK+ Sbjct: 235 EGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDL 288 >gi|167822116|ref|ZP_02453587.1| chromosomal replication initiation protein [Burkholderia pseudomallei 9] Length = 386 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 85/234 (36%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87 ++ D+ + A + A P + L G G GK+ L + ++ Sbjct: 52 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 111 Query: 88 --SRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128 R+ + + + ++ + +L++DI + F+ Sbjct: 112 KPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 171 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + +++T+ T+P L SR + V I P+ + ++++ Sbjct: 172 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 231 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + +A ++ + + ++ E + K+ + G IT L E LK+ Sbjct: 232 EGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDL 285 >gi|167813575|ref|ZP_02445255.1| chromosomal replication initiation protein [Burkholderia pseudomallei 91] Length = 391 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 85/234 (36%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87 ++ D+ + A + A P + L G G GK+ L + ++ Sbjct: 57 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 116 Query: 88 --SRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128 R+ + + + ++ + +L++DI + F+ Sbjct: 117 KPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 176 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + +++T+ T+P L SR + V I P+ + ++++ Sbjct: 177 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 236 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + +A ++ + + ++ E + K+ + G IT L E LK+ Sbjct: 237 EGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDL 290 >gi|282877834|ref|ZP_06286646.1| chromosomal replication initiator protein DnaA [Prevotella buccalis ATCC 35310] gi|281300045|gb|EFA92402.1| chromosomal replication initiator protein DnaA [Prevotella buccalis ATCC 35310] Length = 470 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 32/251 (12%), Positives = 82/251 (32%), Gaps = 31/251 (12%) Query: 24 KEEQLFFSFPRCLGISRDDLLVHSAIEQAVR----LIDSWPSWPSRVVILVGPSGSGKSC 79 + +QL + ++ ++ + + + + + + + GPSG GK+ Sbjct: 124 QPQQLDPNL--NPHLTFNNYIEGDSNKLPRSVGMSIAEHPNKTQFNPMFIYGPSGCGKTH 181 Query: 80 L---------------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID- 117 L A ++ + + N T ++++DI Sbjct: 182 LINAIGMLSKQLYPQKRVLYVSARLFQVQYTNAVLQNSVNDF-INFYQTIDLLIVDDIQE 240 Query: 118 --LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 FHI N + + +++ + PV L +R + ++ P+ Sbjct: 241 WMTATKTQDTFFHIFNHLFRNGKRIILASDRPPVDLKGMNERLLTRFACGLIAELEKPNL 300 Query: 176 DFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235 ++ + I + YI Q S+ + +++ + ++ + LA Sbjct: 301 QLCIDILNSKIQRDGLQIPDDVVQYIAQTANGSVRDLQGVINSLLAYSVVYNSVVDMRLA 360 Query: 236 AEVLKETQQCD 246 V++ + D Sbjct: 361 QRVIQRAVKID 371 >gi|167620899|ref|ZP_02389530.1| chromosomal replication initiation protein [Burkholderia thailandensis Bt4] Length = 401 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 85/234 (36%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87 ++ D+ + A + A P + L G G GK+ L + ++ Sbjct: 67 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 126 Query: 88 --SRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128 R+ + + + ++ + +L++DI + F+ Sbjct: 127 KPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 186 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + +++T+ T+P L SR + V I P+ + ++++ Sbjct: 187 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 246 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + +A ++ + + ++ E + K+ + G IT L E LK+ Sbjct: 247 EGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDL 300 >gi|167582970|ref|ZP_02375844.1| chromosomal replication initiation protein [Burkholderia thailandensis TXDOH] Length = 392 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 85/234 (36%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87 ++ D+ + A + A P + L G G GK+ L + ++ Sbjct: 58 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 117 Query: 88 --SRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128 R+ + + + ++ + +L++DI + F+ Sbjct: 118 KPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 177 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + +++T+ T+P L SR + V I P+ + ++++ Sbjct: 178 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 237 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + +A ++ + + ++ E + K+ + G IT L E LK+ Sbjct: 238 EGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDL 291 >gi|66766353|ref|YP_241115.1| chromosomal replication initiation protein [Xanthomonas campestris pv. campestris str. 8004] gi|81307653|sp|Q4V0S8|DNAA_XANC8 RecName: Full=Chromosomal replication initiator protein DnaA gi|66571685|gb|AAY47095.1| chromosomal replication initiator [Xanthomonas campestris pv. campestris str. 8004] Length = 442 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 42/238 (17%), Positives = 83/238 (34%), Gaps = 27/238 (11%) Query: 35 CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS 90 + + + + A++ ++L G +G GK+ L + R Sbjct: 107 DSHYTFANFVEGRSNQLGLAAAIQAAQKPGDRAHNPLLLYGSTGLGKTHLMFAAGNALRQ 166 Query: 91 TR-------------FSNIAKSLDSILIDT-------RKPVLLEDIDLLDF---NDTQLF 127 FS + ++L +D +L++DI + F Sbjct: 167 ANPAAKVMYLRSEQFFSAMIRALHDKAMDQFKRQFHQIDALLIDDIQFFAGMDRTQEEFF 226 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ +++T +P P L SRL V I PD + +++ Sbjct: 227 HTFNALFDGRQHIILTCDRYPREVEGLEPRLKSRLAWGLSVAIDPPDFETRAAIVLAKAR 286 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 +R I +A I ++M ++ E ++ + A G IT A E L++ + Sbjct: 287 ERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARANFTGRSITVEFAQETLRDLLRA 344 >gi|167736497|ref|ZP_02409271.1| chromosomal replication initiation protein [Burkholderia pseudomallei 14] Length = 385 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 85/234 (36%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87 ++ D+ + A + A P + L G G GK+ L + ++ Sbjct: 51 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 110 Query: 88 --SRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128 R+ + + + ++ + +L++DI + F+ Sbjct: 111 KPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 170 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + +++T+ T+P L SR + V I P+ + ++++ Sbjct: 171 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 230 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + +A ++ + + ++ E + K+ + G IT L E LK+ Sbjct: 231 EGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDL 284 >gi|78484347|ref|YP_390272.1| chromosomal replication initiator protein DnaA [Thiomicrospira crunogena XCL-2] gi|123728109|sp|Q31JS5|DNAA_THICR RecName: Full=Chromosomal replication initiator protein DnaA gi|78362633|gb|ABB40598.1| chromosomal replication initiator protein DnaA [Thiomicrospira crunogena XCL-2] Length = 467 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 37/234 (15%), Positives = 85/234 (36%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDK---- 87 + D + A + A P + G G GK+ L + ++ Sbjct: 133 NTNFTFDTFVEGKANQLAAAAARQVADNPGGSYNPFFIYGGVGLGKTHLMHAIGNELMRR 192 Query: 88 ---------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLFH 128 +++ +L ID + +L++DI + + FH Sbjct: 193 DPNARVVYLHSERFVADMVNALRHNKIDEFKRFYRSLDALLIDDIQFFAKKEQSQEEFFH 252 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++ + + +++T+ FP L SR + + P+ + +++K A+ Sbjct: 253 TFNTLLEGNKQVILTSDRFPKEVDGLEDRLKSRFGWGLTIAVEPPEFEMRVAILMKKAAE 312 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + ++A +I +R+ ++ E + ++ A +T LA + LK+ Sbjct: 313 FGFLLPDEVAFFIAKRLRGNVRDLEGALKRVGAFAQFTQQLVTVDLAKDALKDL 366 >gi|119385558|ref|YP_916613.1| chromosomal replication initiation protein [Paracoccus denitrificans PD1222] gi|119376153|gb|ABL70917.1| chromosomal replication initiator protein DnaA [Paracoccus denitrificans PD1222] Length = 448 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 38/265 (14%), Positives = 88/265 (33%), Gaps = 32/265 (12%) Query: 13 PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVIL 69 P ++ P+ E+ + P + ++ +V E A + L Sbjct: 88 PVVKRPAPPRVSGEE-ELAAPLDSRFTFENFVVGKPNELAHAAARRVAEGGPVTFNPLFL 146 Query: 70 VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI--------------------LIDTRK 109 G G GK+ L + + + + + L + L T Sbjct: 147 YGGVGLGKTHLMHAIAREIQIRQPEARVLYLSAEQFMYRFVQALRDRTVMDFKELFRTVS 206 Query: 110 PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 ++++D+ + D + FH N++ ++++A P + SRL+ Sbjct: 207 VLMVDDVQFIAGKDSTQEEFFHTFNTLVDQGKQIVISADRAPGEIKDMEERIKSRLQCGL 266 Query: 167 VVKISLPDDDFLEKVIVK-----MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 VV + D + ++ + I + ++ R+ ++ E + ++ Sbjct: 267 VVDLHPTDYELRLGILQSKTDSFRAQYPGLLIAPGVLEFLAHRITSNVRVLEGALQRLFA 326 Query: 222 LALSRGMGITRSLAAEVLKETQQCD 246 A G IT + E L + + + Sbjct: 327 FASLMGREITLDMTQECLADILRAN 351 >gi|291455692|ref|ZP_06595082.1| putative replication initiator protein [Bifidobacterium breve DSM 20213] gi|291382620|gb|EFE90138.1| putative replication initiator protein [Bifidobacterium breve DSM 20213] Length = 488 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 47/263 (17%), Positives = 92/263 (34%), Gaps = 40/263 (15%) Query: 10 FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RV 66 F VP ++ N P+ + D + + A + + Sbjct: 131 FSVPQQKMNRDPETH---------LNKSFTFDSFVPGDSNRFARTVALAVAEGSGQDFNP 181 Query: 67 VILVGPSGSGKSCLANIWSD---------KSRSTRFSNIAKSLDSILIDTRKP------- 110 + + G SG GK+ L N + K R L +T + Sbjct: 182 LCIYGGSGLGKTHLLNAIGNYALVKDPGLKVRYVTSEEFTNDFIDALQNTNQSQGQIAEF 241 Query: 111 ---------VLLEDIDLLDFNDTQL---FHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158 +L++DI L + L FH NS+HQ + +++ + P + L Sbjct: 242 NRRYRQVDVLLIDDIQFLGGKEATLDQFFHTFNSLHQANKRIVIASDVAPKNLKGFEARL 301 Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218 SR ++ V + PD + ++ + A I + I +R ++ E + + Sbjct: 302 ISRFESGLTVDVKPPDLETRIAILRMIAAMNGSKIPNDVLDLIAERFTENIRELEGALTR 361 Query: 219 MDNLALSRGMGITRSLAAEVLKE 241 + +A +TR+LA + L++ Sbjct: 362 VTAVASLSNQPVTRALAEQTLQD 384 >gi|313205512|ref|YP_004044689.1| chromosomal replication initiator protein dnaa [Riemerella anatipestifer DSM 15868] gi|312444828|gb|ADQ81183.1| chromosomal replication initiator protein DnaA [Riemerella anatipestifer DSM 15868] gi|315023384|gb|EFT36394.1| Chromosomal replication initiator protein dnaA [Riemerella anatipestifer RA-YM] gi|325335056|gb|ADZ11330.1| DnaA [Riemerella anatipestifer RA-GD] Length = 492 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 41/282 (14%), Positives = 89/282 (31%), Gaps = 43/282 (15%) Query: 6 EDYSFFVPDKQKNDQPKNKEE-QLFFSFP----------RCLGISRDDLLVHSAIEQAVR 54 + S VP Q+ P + Q P S D+ + + + A Sbjct: 112 KGMSMPVPKPQEIMPPSLSSKIQNPLVVPGLKKISVESNLNPVHSFDNFVEGESNKFAFS 171 Query: 55 ----LIDSWPSWPSRVVILVGPSGSGKSCLANI-------------------------WS 85 + + + G G GK+ +A + Sbjct: 172 AAKIIAKRPGETSFNPMFIYGGVGVGKTHIAQAIGLEIKNTYPDKVVHYLSSEKFIQQFI 231 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLM 142 + S R + ++ + ++++DI L FHI + +HQ +++ Sbjct: 232 KAANSNRGNANSREDFANFYKMLDVLIVDDIQFLSGKRATQDSFFHIFDYLHQNGKQIIL 291 Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 T+ P + SR K +I PD D K+IV I + + + ++ Sbjct: 292 TSDKAPADIMDIEERVVSRFKWGLTAEIKSPDYDTRRKIIVDKLHRDGIALSEDMIDFLA 351 Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 ++ ++ +++ + + +T L E + + Sbjct: 352 GEVQSNVRELIGVINAVIAYSTIYKSDLTLDLLKETINKISA 393 >gi|299135923|ref|ZP_07029107.1| chromosomal replication initiator protein DnaA [Acidobacterium sp. MP5ACTX8] gi|298602047|gb|EFI58201.1| chromosomal replication initiator protein DnaA [Acidobacterium sp. MP5ACTX8] Length = 474 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 47/267 (17%), Positives = 93/267 (34%), Gaps = 33/267 (12%) Query: 8 YSFFVPDKQKNDQPKN---KEEQLFFSFPR----CLGISRDDLLVHSAIEQAVRLIDSWP 60 +S P +N P EQ F + D ++ S + A + Sbjct: 107 HSLNAPRSLRNGAPTGNGVGPEQSRFDWNTAAQLNPRYQFDSFVIGSGNQFAHAAAQAVA 166 Query: 61 SWPSRV---VILVGPSGSGKSCLANIWSDK------SRSTRFSNIAKSLDSILIDTR--- 108 PS+ + + G G GK+ L + + + + K + ++ R Sbjct: 167 ERPSKAYNPLFVYGGVGMGKTHLMQAIGHQVKLRQPHAAISYVSGEKFTNEMINSVRYDK 226 Query: 109 -----------KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 +L++DI L + + FH N++H+ +++ + P Sbjct: 227 MTGFRDKFRTVDVLLIDDIQFLAGKERTQEEFFHTFNALHESMKQIVIASDRPPKELADF 286 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 L SR + VV I PD + ++ K Q + +A +I + ++ E Sbjct: 287 EDRLRSRFEWGLVVDIQPPDLETKVAILQKKAELEQTVLPMDVALFIAGNVRTNVRELEG 346 Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKE 241 + ++ G+ IT A + LK+ Sbjct: 347 ALVRLIAWCSLHGVEITLPTAQQCLKQ 373 >gi|332294862|ref|YP_004436785.1| Chromosomal replication initiator protein dnaA [Thermodesulfobium narugense DSM 14796] gi|332177965|gb|AEE13654.1| Chromosomal replication initiator protein dnaA [Thermodesulfobium narugense DSM 14796] Length = 442 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 41/254 (16%), Positives = 93/254 (36%), Gaps = 31/254 (12%) Query: 17 KNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPS 73 +N+ K EQ F + + +V A + P + + + G + Sbjct: 92 ENNNKVEKNEQKGF----LSKYTFETFVVGPGNRMAHAASLAVADNPGKAYNPLFIYGGA 147 Query: 74 GSGKSCLANIWS-----------------DKSRSTRFSNIAKSLDSILIDTRKPV---LL 113 G GK+ L + +K + + I + + + + L+ Sbjct: 148 GLGKTHLLQAIATTIRSKKPNLYILYITSEKFTNEFINAIKDDKINSFQEHYRNIDILLV 207 Query: 114 EDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 +DI + + + FH N++++ +++++ P L +R + + I Sbjct: 208 DDIQFIAGKERTQEEFFHTFNTLYESGKQIVLSSDRPPKEIRTLEERLRTRFEMGLIADI 267 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK-MDNLALSRGMG 229 PD + ++ K I ID + I +++ ++ E ++ K M ++++ Sbjct: 268 QPPDLETRIAILQKKAEIENIDIDPEALVLIAEKVASNIRELEGVLTKSMALCSINQESR 327 Query: 230 ITRSLAAEVLKETQ 243 IT A E LK + Sbjct: 328 ITIKHAQEALKNIE 341 >gi|313889534|ref|ZP_07823180.1| chromosomal replication initiator protein DnaA [Streptococcus pseudoporcinus SPIN 20026] gi|313122146|gb|EFR45239.1| chromosomal replication initiator protein DnaA [Streptococcus pseudoporcinus SPIN 20026] Length = 451 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 43/278 (15%), Positives = 92/278 (33%), Gaps = 37/278 (13%) Query: 4 MKEDYSF-----FVPDKQKNDQPKNKEEQLFFSF---PRCLGISRDDLLVHSAIEQAVRL 55 + DY F +P Q+ Q + + S ++ + AV Sbjct: 74 IAVDYQFEDDLEMMPGTQEGSQAFSSQNINPLPLVKSDLNPKYSFENFIQGDENRWAVAA 133 Query: 56 ---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS------------------RSTRFS 94 + + P + + G G GK+ L N + Sbjct: 134 SIAVANTPGTTYNPLFIWGGPGLGKTHLLNAIGNSVLLDNPNARVKYITAENFINEFVIH 193 Query: 95 NIAKSLDSILIDTRKP--VLLEDIDLLD-----FNDTQLFHIINSIHQYDSSLLMTARTF 147 ++D + R +L++DI L + F+ N++H + +++T+ Sbjct: 194 IRLDTMDELKEKFRNLDLLLIDDIQSLAKKTLLGTQEEFFNTFNALHNNNKQIVLTSDRT 253 Query: 148 PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER 207 P L +R K V I+ PD + ++ + + Y+ + + Sbjct: 254 PDHLNDLEQRLVTRFKWGLTVNITPPDFETRVAILTNKIQEYSFTFPQDTIEYLAGQFDS 313 Query: 208 SLVFAEKLVDKMDNLA-LSRGMGITRSLAAEVLKETQQ 244 ++ E + + +A + IT +AAE ++ +Q Sbjct: 314 NVRDLEGALKDISLVANFKQIDRITVDIAAEAIRARKQ 351 >gi|296118604|ref|ZP_06837182.1| DNA-directed DNA replication initiator protein [Corynebacterium ammoniagenes DSM 20306] gi|295968503|gb|EFG81750.1| DNA-directed DNA replication initiator protein [Corynebacterium ammoniagenes DSM 20306] Length = 381 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 44/266 (16%), Positives = 104/266 (39%), Gaps = 39/266 (14%) Query: 9 SFFVPDKQKNDQPK-----NKEEQLFFSFPRCLGISRDDLLVHSAIE----QAVRLIDSW 59 SF P + + + N+E+ L + D+ ++ S+ AV + ++ Sbjct: 17 SFQAPSSARIPRERPAHDPNREQSL------NPTHTFDNFVIGSSNRFANGAAVAVAEN- 69 Query: 60 PSWPSRVVILVGPSGSGKSCLANI----WSDKSRSTRFSNIA------KSLDSILIDTRK 109 P+ + + G SG GK+ L + + R ++ ++S+ D ++ Sbjct: 70 PARAYNPLFIWGGSGLGKTHLLHAAGNYAQLLHKGLRVKYVSSEEFTNDYINSLRDDRQE 129 Query: 110 P----------VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156 ++++DI L+ + + FH N++HQ + +++++ P Sbjct: 130 SFKRRYRNLDILMVDDIQFLEGKESTQEEFFHTFNALHQANKQIILSSDRPPKQLTTLED 189 Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216 L +R + + I PD + +++K + +D+ + I R E S+ E + Sbjct: 190 RLRTRFEGGLITDIQPPDLETRIAILMKKASADGTTVDRAVLELIASRFESSIRELEGAL 249 Query: 217 DKMDNLALSRGMGITRSLAAEVLKET 242 ++ + I +A L++ Sbjct: 250 IRVSAYSSLVNEPINIEMAEVALRDL 275 >gi|291165897|gb|EFE27944.1| ATPase involved in DNA replication initiation [Filifactor alocis ATCC 35896] Length = 443 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 36/237 (15%), Positives = 87/237 (36%), Gaps = 27/237 (11%) Query: 36 LGISRDDLLVHSAIEQAVRLI---DSWPSWPSRVVILVGPSGSGKSCLANI--------- 83 + D +V + A + P+ + + G G GK+ L + Sbjct: 107 PKYTFDSFVVGNNNVLAHSACVAVANDPAHSYNPLFIYGGVGLGKTHLMHAIGNHVLSQN 166 Query: 84 ------------WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLFH 128 ++++ ++ + + + +L++DI + + + FH Sbjct: 167 KDVKILYLSSETFTNELINSIKDDTNEEFRNKYRKDVDILLIDDIQFISEKERTQEEFFH 226 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H D +++++ P + L SR + +V I PD + ++ K + Sbjct: 227 TFNTLHGADKQIIISSDRAPKEIPMLADRLRSRFEMGLIVDIQPPDYETRIAILRKKAQE 286 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 + + + YI + ++ ++ E + ++ + IT L+ E LK Q Sbjct: 287 EKHHVPDLVFEYIAKNIKSNIRELEGALTRIFAYSDLTKREITPELSQEALKNIFQS 343 >gi|330814957|ref|YP_004358662.1| Chromosomal replication initiator protein DnaA [Burkholderia gladioli BSR3] gi|327367350|gb|AEA58706.1| Chromosomal replication initiator protein DnaA [Burkholderia gladioli BSR3] Length = 527 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 87/234 (37%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWS-----D 86 ++ D+ + A + A P + L G G GK+ L + D Sbjct: 193 NPVLTFDNFVTGKANQLARAAAIQVADNPGVSYNPLFLYGGVGLGKTHLIHAIGNQLLLD 252 Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128 K+ + A+ S ++ + +D +DLL +D + F+ Sbjct: 253 KAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 312 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + +++T+ T+P L SR + V I P+ + ++++ Sbjct: 313 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 372 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + +A ++ + + ++ E + K+ + G IT L E LK+ Sbjct: 373 EGVNLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDL 426 >gi|315640356|ref|ZP_07895472.1| DNA-directed DNA replication initiator protein [Enterococcus italicus DSM 15952] gi|315483892|gb|EFU74372.1| DNA-directed DNA replication initiator protein [Enterococcus italicus DSM 15952] Length = 446 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 44/258 (17%), Positives = 92/258 (35%), Gaps = 31/258 (12%) Query: 15 KQKNDQPKNKEEQLFFSFPRC----LGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVV 67 ++K + + EQ P + D ++ + A + P + Sbjct: 88 QKKKEPQAVQPEQ-AEEVPSKAMLNPKYTFDTFVIGKGNQMAHAAALVVAEDPGSIYNPL 146 Query: 68 ILVGPSGSGKSCLANIW-----SDKSRSTRFSNIAKSLDSILIDTRK------------- 109 G G GK+ L + + + +++ + I++ K Sbjct: 147 FFYGGVGLGKTHLMHAIGHQMLQKRPNARIKYVSSENFTNDFINSIKRKEMEEFRNEYRT 206 Query: 110 --PVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164 +L++DI L + + F+ ++ + +++T+ P L SR Sbjct: 207 VDLLLVDDIQFLVNKEGTQEEFFNTFEELYLNNKQIVLTSDRLPNEIPTLPERLVSRFAW 266 Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 V I+ PD + ++ K + I +YI +++ ++ E + ++ A Sbjct: 267 GLSVDITPPDLETRTAILRKKAEAENLEIPDDTLSYIAGQIDSNIRELEGALVRVQAFAA 326 Query: 225 SRGMGITRSLAAEVLKET 242 R + IT SLAAE LK Sbjct: 327 MRNVDITTSLAAEALKAL 344 >gi|222528058|ref|YP_002571940.1| chromosomal replication initiator protein DnaA [Caldicellulosiruptor bescii DSM 6725] gi|312621128|ref|YP_004022741.1| chromosomal replication initiator protein dnaa [Caldicellulosiruptor kronotskyensis 2002] gi|222454905|gb|ACM59167.1| chromosomal replication initiator protein DnaA [Caldicellulosiruptor bescii DSM 6725] gi|312201595|gb|ADQ44922.1| chromosomal replication initiator protein DnaA [Caldicellulosiruptor kronotskyensis 2002] Length = 454 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 43/266 (16%), Positives = 93/266 (34%), Gaps = 38/266 (14%) Query: 6 EDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLI----DSWPS 61 E Y F+ KQ QL + + +V + A ++ P Sbjct: 92 EKYKRFLKPKQDEKP--EIVTQL------NPKYTFETFVVGNNNRLAHAAALAVAETPPG 143 Query: 62 W-PSRVVILVGPSGSGKSCLANIWSDK------------------SRSTRFSNIAKSLDS 102 + + G G GK+ L + + + + D Sbjct: 144 ERTYNPLFIYGGVGLGKTHLMHAIGHHVLKLYPGTKVMYVTSEIFTNELIAAIRDEKTDE 203 Query: 103 ILIDTRKP--VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 + R +L++DI L + + FH N++++ + +++++ P Sbjct: 204 FRLKYRNVDVLLIDDIQFLGGKERTQEEFFHTFNTLYEANKKIILSSDRPPKEINTLEDR 263 Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 L SR + + I PD + ++ K + + + +I ++E ++ E ++ Sbjct: 264 LRSRFEWGLITDIQPPDFETRIAILSKKCQLEGTPVPQHILEFIASKIETNIRELEGALN 323 Query: 218 KMDNLA--LSRGMGITRSLAAEVLKE 241 K+ + ++ IT LA + LKE Sbjct: 324 KILAYSKLMAPDKEITLDLAEKALKE 349 >gi|317126742|ref|YP_004093024.1| chromosomal replication initiator protein DnaA [Bacillus cellulosilyticus DSM 2522] gi|315471690|gb|ADU28293.1| chromosomal replication initiator protein DnaA [Bacillus cellulosilyticus DSM 2522] Length = 451 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 33/213 (15%), Positives = 77/213 (36%), Gaps = 30/213 (14%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD----- 86 + D ++ S A + P++ + + G G GK+ L + Sbjct: 117 NPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIDH 176 Query: 87 KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 K + ++ + I++ + +L++DI L + + FH Sbjct: 177 KPNAKVVYLSSEKFTNEFINSIRDNKAVNFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFH 236 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H+ +++++ P L SR + + I+ PD + ++ K Sbjct: 237 TFNALHEERKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 296 Query: 189 RQIFIDKKLAAYIVQRME---RSLV-FAEKLVD 217 + I ++ YI +++ R L ++V Sbjct: 297 ENLDIPNEVMLYIANQIDTNIRELEGALIRVVA 329 >gi|167589705|ref|ZP_02382093.1| chromosomal replication initiation protein [Burkholderia ubonensis Bu] Length = 357 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 33/234 (14%), Positives = 85/234 (36%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87 ++ D+ + A + A P + L G G GK+ L + ++ Sbjct: 23 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 82 Query: 88 --SRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128 R+ + + + ++ + +L++DI + F+ Sbjct: 83 KPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 142 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + +++T+ T+P L SR + V I P+ + ++++ Sbjct: 143 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 202 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + +A ++ + + ++ E + K+ + G I+ L E LK+ Sbjct: 203 EGVNLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREISIELTKEALKDL 256 >gi|256831256|ref|YP_003159983.1| chromosomal replication initiator protein DnaA [Jonesia denitrificans DSM 20603] gi|256684787|gb|ACV07680.1| chromosomal replication initiator protein DnaA [Jonesia denitrificans DSM 20603] Length = 476 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 44/267 (16%), Positives = 91/267 (34%), Gaps = 37/267 (13%) Query: 13 PDKQKNDQPKNKEEQL---------FFSFPRC--LGISRDDLLVHSAIE---QAVRLIDS 58 P Q + + L + ++ S+ A + Sbjct: 102 PHTQDSAPTPDAPRSLVDREPVVPKSLDEGHRLNPKYIFETFVIGSSNRFAHAAAVAVAE 161 Query: 59 WPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS----------LDSILIDTR 108 P+ + + G SG GK+ L + + + + S K ++SI + Sbjct: 162 APAKAYNPLFIYGGSGLGKTHLLHAIGNYALNLYPSAKVKYVNSEEFTNDFINSIRDEKA 221 Query: 109 KP----------VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 +L++DI L + + FH N++H + +++T+ P Sbjct: 222 GAFQRRHREVDFLLIDDIQFLQGKEATMEEFFHTFNALHNANKQVVITSDLPPKQLAGFE 281 Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215 L SR + + + PD + ++ K A ++ + YI R+ ++ E Sbjct: 282 DRLRSRFEWGLITDVQPPDLETRIAILRKKAAGERLNAPDDVLEYIASRISSNIRELEGA 341 Query: 216 VDKMDNLALSRGMGITRSLAAEVLKET 242 + ++ A + R LA VLK+ Sbjct: 342 LIRVTAFANLNRQPVDRQLAEIVLKDL 368 >gi|294101016|ref|YP_003552874.1| chromosomal replication initiator protein DnaA [Aminobacterium colombiense DSM 12261] gi|293615996|gb|ADE56150.1| chromosomal replication initiator protein DnaA [Aminobacterium colombiense DSM 12261] Length = 442 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 45/274 (16%), Positives = 93/274 (33%), Gaps = 35/274 (12%) Query: 3 LMKEDYS------FFVPDKQKNDQPKNKEEQLFFSFPR---CLGISRDDLLVHSAIEQAV 53 LM + Y+ ++ Q + Q + PR + +V + A Sbjct: 68 LMDKGYAQSLELKVASEARKDEQQRAERAAQHTGTLPRSGLNPNYIFNSFVVGKSNRLAH 127 Query: 54 RL---IDSWPSWPSRVVILVGPSGSGKSCLANIW-----------------SDKSRSTRF 93 + P + + G G GK+ L + S+K + Sbjct: 128 AASLAVAETPGEAYNPLFIWGGVGLGKTHLMHAIGHYVLNKNNSLKVTYVSSEKFINEFI 187 Query: 94 SNIAKSLDSILIDTRKPV---LLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTF 147 +I + + V L++DI L + + FH N +H +++ + Sbjct: 188 QSIKNNRTQEFKSKYRSVDILLIDDIQFLGNKGSSQEEFFHTFNQLHVSKKQIVICSDRP 247 Query: 148 PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER 207 P L SR + V I +PD + ++ K R + + + +++ Q + Sbjct: 248 PKEIQNIEDRLVSRFEWGLVTDIQMPDLETRIAILQKKAQIRNYEVPEDVISFLAQNVPS 307 Query: 208 SLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++ E ++++ A IT A + LK+ Sbjct: 308 NIRELEGALNRIIACAELNSEPITEENATQWLKD 341 >gi|223038517|ref|ZP_03608811.1| chromosomal replication initiator protein DnaA [Campylobacter rectus RM3267] gi|222880374|gb|EEF15461.1| chromosomal replication initiator protein DnaA [Campylobacter rectus RM3267] Length = 436 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 84/232 (36%), Gaps = 24/232 (10%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN--------- 82 + ++ +V + + A + ++ + + GP+G GK+ L Sbjct: 102 NPSYTFENFVVGDSNQFAFLSAKAVSEQLGKIYNPLFIYGPTGLGKTHLLQSVGNFCLNG 161 Query: 83 ---IWSDKSRSTRFSNIAKSLDSILIDTRK------PVLLEDIDLLDFND---TQLFHII 130 + S + + R+ +L++D+ L D + FH Sbjct: 162 GKMVICVTSEQFITDFTYNLNNHSMERFREKYRNCDVLLIDDVQFLGKTDKIQEEFFHTF 221 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N +H + ++MT+ P L +R + + I+ P+ D +I K + Sbjct: 222 NELHAKNGQIVMTSDRQPKLLKGFEDRLRTRFEWGIIADITPPELDTKIAIIKKKCEFDK 281 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 I++ ++ YI M ++ E + ++ A IT A +L++ Sbjct: 282 IYLGIEVINYIATNMGDNIREIESAIINLNAYARLMRQEITLEFAKNILRDQ 333 >gi|72117120|gb|AAZ59383.1| chromosomal replication initiator protein, DnaA [Ralstonia eutropha JMP134] Length = 611 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 87/234 (37%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD----- 86 ++ D+ + A + A + P + + L G G GK+ L + + Sbjct: 277 NPILTFDNFVTGKANQLARAAAIQVANNPGKSYNPLYLYGGVGLGKTHLIHAIGNFMLME 336 Query: 87 --KSRSTRFSNIAKSLDSILIDTRKP-------------VLLEDIDLLDF---NDTQLFH 128 ++R D + RK +L++DI + F+ Sbjct: 337 NPRARIRYIHAEQYVSDVVKAYQRKAFDEFKRYYHSLDLLLIDDIQFFSGKNRTQEEFFY 396 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + +++T+ T+P L SR + V I P+ + +++K A Sbjct: 397 AFEALIANRAQVIITSDTYPKEITGIDDRLISRFDSGLTVAIEPPELEMRVAILMKKAAA 456 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + +++A ++ + + ++ E + K+ + G IT + E LK+ Sbjct: 457 ENVSVPEEVAFFVAKHLRSNVRELEGALRKILAFSNFHGRDITIEVTREALKDL 510 >gi|226326146|ref|ZP_03801664.1| hypothetical protein COPCOM_03965 [Coprococcus comes ATCC 27758] gi|225205688|gb|EEG88042.1| hypothetical protein COPCOM_03965 [Coprococcus comes ATCC 27758] Length = 466 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 43/250 (17%), Positives = 88/250 (35%), Gaps = 40/250 (16%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWS------ 85 + D +V A + P + L G G GK+ L + + Sbjct: 120 NPKYTFDTFVVGGNNNFAHAASLAVAESPGEVYNPLFLYGGVGLGKTHLMHSIAHYILDR 179 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKP--------------------VLLEDIDLLDFND-- 123 + S+ + + ++ R +L++D+ + + Sbjct: 180 EPSKKVLYVTSETFTNDLITAIRNGKTGNDLAMNAFRDKYRNNDVLLIDDVQFIIGKEST 239 Query: 124 -TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 + FH N +H +++++ P L +R + + IS+PD + ++ Sbjct: 240 QEEFFHTFNHLHNAGKQIVISSDKPPKDMTTLEARLRTRFEWGLIADISVPDYETRMAIL 299 Query: 183 VKMFADRQIF---IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR---GMGITRSLAA 236 K Q+ I ++ YI ++ ++ E ++K+ +AL R SLAA Sbjct: 300 YKKIELDQLERYQIPDEVIQYIAMNIKTNIRELEGSLNKL--IALYRIGGRKNFDVSLAA 357 Query: 237 EVLKETQQCD 246 E LK+ D Sbjct: 358 EALKDMIAPD 367 >gi|167717462|ref|ZP_02400698.1| chromosomal replication initiation protein [Burkholderia pseudomallei DM98] Length = 381 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 85/234 (36%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87 ++ D+ + A + A P + L G G GK+ L + ++ Sbjct: 47 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 106 Query: 88 --SRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128 R+ + + + ++ + +L++DI + F+ Sbjct: 107 KPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 166 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + +++T+ T+P L SR + V I P+ + ++++ Sbjct: 167 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 226 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + +A ++ + + ++ E + K+ + G IT L E LK+ Sbjct: 227 EGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDL 280 >gi|161611268|ref|YP_294227.2| chromosomal replication initiation protein [Ralstonia eutropha JMP134] Length = 584 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 87/234 (37%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD----- 86 ++ D+ + A + A + P + + L G G GK+ L + + Sbjct: 250 NPILTFDNFVTGKANQLARAAAIQVANNPGKSYNPLYLYGGVGLGKTHLIHAIGNFMLME 309 Query: 87 --KSRSTRFSNIAKSLDSILIDTRKP-------------VLLEDIDLLDF---NDTQLFH 128 ++R D + RK +L++DI + F+ Sbjct: 310 NPRARIRYIHAEQYVSDVVKAYQRKAFDEFKRYYHSLDLLLIDDIQFFSGKNRTQEEFFY 369 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + +++T+ T+P L SR + V I P+ + +++K A Sbjct: 370 AFEALIANRAQVIITSDTYPKEITGIDDRLISRFDSGLTVAIEPPELEMRVAILMKKAAA 429 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + +++A ++ + + ++ E + K+ + G IT + E LK+ Sbjct: 430 ENVSVPEEVAFFVAKHLRSNVRELEGALRKILAFSNFHGRDITIEVTREALKDL 483 >gi|83719949|ref|YP_443733.1| chromosomal replication initiation protein [Burkholderia thailandensis E264] gi|123726547|sp|Q2STL6|DNAA_BURTA RecName: Full=Chromosomal replication initiator protein DnaA gi|83653774|gb|ABC37837.1| chromosomal replication initiator protein DnaA [Burkholderia thailandensis E264] Length = 536 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 85/234 (36%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87 ++ D+ + A + A P + L G G GK+ L + ++ Sbjct: 202 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 261 Query: 88 --SRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128 R+ + + + ++ + +L++DI + F+ Sbjct: 262 KPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 321 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + +++T+ T+P L SR + V I P+ + ++++ Sbjct: 322 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 381 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + +A ++ + + ++ E + K+ + G IT L E LK+ Sbjct: 382 EGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDL 435 >gi|328468760|gb|EGF39731.1| chromosomal replication initiation protein [Lactobacillus helveticus MTCC 5463] Length = 455 Score = 108 bits (271), Expect = 7e-22, Method: Composition-based stats. Identities = 40/246 (16%), Positives = 86/246 (34%), Gaps = 26/246 (10%) Query: 20 QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSG 76 Q K +Q + + D+ + + A + P + + G G G Sbjct: 105 QEKRAPKQFTKNLKLNEKYTFDNFVQGEGNKLAAGAALAVADSPGSFYNPLFIFGGVGLG 164 Query: 77 KSCLANIW-----SDKSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDI 116 K+ L +++ + +++ + I++ K +L++DI Sbjct: 165 KTHLMQAIGHQMLAERPNAKVVYIQSETFVNDFINSIKNKTQDQFREKYRTCDLLLVDDI 224 Query: 117 DLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 + + FH +++ ++MT+ P L SR V+I+ P Sbjct: 225 QFFAKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFTWGLQVEITPP 284 Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233 D + ++ + + ID YI +++ ++ E + K+ A I + Sbjct: 285 DLETRIAILRRKAEAEGLVIDDNTLDYIASQVDTNIRELEGALVKVQAYATIERADINVN 344 Query: 234 LAAEVL 239 LA E L Sbjct: 345 LAREAL 350 >gi|313611875|gb|EFR86331.1| chromosomal replication initiator protein DnaA [Listeria monocytogenes FSL F2-208] Length = 327 Score = 108 bits (271), Expect = 7e-22, Method: Composition-based stats. Identities = 32/213 (15%), Positives = 74/213 (34%), Gaps = 30/213 (14%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW-----SD 86 D ++ S A + P++ + + G G GK+ L + Sbjct: 111 NPRYVFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAVGHYVQQH 170 Query: 87 KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 K + ++ + I + + +L++DI L + + FH Sbjct: 171 KDNAKVMYLSSEKFTNEFISSIRDNKTEEFRTKYRNVDVLLIDDIQFLAGKEGTQEEFFH 230 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N+++ +++++ P L SR + + I+ PD + ++ K Sbjct: 231 TFNTLYDEQKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 290 Query: 189 RQIFIDKKLAAYIVQRME---RSLV-FAEKLVD 217 + I ++ YI +++ R L ++V Sbjct: 291 DGLDIPNEVMLYIANQIDSNIRELEGALIRVVA 323 >gi|297521958|ref|ZP_06940344.1| DNA replication initiation factor [Escherichia coli OP50] Length = 103 Score = 108 bits (271), Expect = 7e-22, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 47/102 (46%) Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198 LL+T P + LPDL SRL + K+ D+ + + R + + + Sbjct: 1 RLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLRGFELPEDVG 60 Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 ++++R++R + +D++D +++ +T E+LK Sbjct: 61 RFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 102 >gi|296453188|ref|YP_003660331.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum subsp. longum JDM301] gi|296182619|gb|ADG99500.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum subsp. longum JDM301] Length = 500 Score = 108 bits (271), Expect = 7e-22, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 85/235 (36%), Gaps = 31/235 (13%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWS------DKS 88 + D + + A + + + + G SG GK+ L N D Sbjct: 161 FTFDSFVPGDSNRFARTVALAVAEGSGQDFNPLCIYGGSGLGKTHLLNAIGNYALVKDPG 220 Query: 89 RSTRFSNIAKSLDSILIDTRKP-------------------VLLEDIDLLDFNDTQL--- 126 R+ + + + + P +L++DI L + L Sbjct: 221 LKVRYVTSEEFTNEFIDALQNPNQSQGQIAEFNRRYRQVDVLLIDDIQFLGGKEATLDQF 280 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH N++HQ + +++ + P + L SR ++ V + PD + ++ + Sbjct: 281 FHTFNALHQANKRIVIASDVAPKNLKGFEARLISRFESGLTVDVKPPDLETRIAILRMIA 340 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I + I +R ++ E + ++ +A +TR+LA + L++ Sbjct: 341 SMNGSKIPSDVLDLIAERFTENIRELEGALTRVTAVASLSNQPVTRALAEQTLQD 395 >gi|167834929|ref|ZP_02461812.1| chromosomal replication initiation protein [Burkholderia thailandensis MSMB43] Length = 412 Score = 108 bits (271), Expect = 7e-22, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 85/234 (36%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87 ++ D+ + A + A P + L G G GK+ L + ++ Sbjct: 78 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 137 Query: 88 --SRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128 R+ + + + ++ + +L++DI + F+ Sbjct: 138 KPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 197 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + +++T+ T+P L SR + V I P+ + ++++ Sbjct: 198 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 257 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + +A ++ + + ++ E + K+ + G IT L E LK+ Sbjct: 258 EGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDL 311 >gi|323465558|gb|ADX69245.1| DNA-directed DNA replication initiator protein [Lactobacillus helveticus H10] Length = 469 Score = 108 bits (271), Expect = 7e-22, Method: Composition-based stats. Identities = 40/246 (16%), Positives = 86/246 (34%), Gaps = 26/246 (10%) Query: 20 QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSG 76 Q K +Q + + D+ + + A + P + + G G G Sbjct: 119 QEKRAPKQFTKNLKLNEKYTFDNFVQGEGNKLAAGAALAVADSPGSFYNPLFIFGGVGLG 178 Query: 77 KSCLANIW-----SDKSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDI 116 K+ L +++ + +++ + I++ K +L++DI Sbjct: 179 KTHLMQAIGHQMLAERPNAKVVYIQSETFVNDFINSIKNKTQDQFREKYRTCDLLLVDDI 238 Query: 117 DLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 + + FH +++ ++MT+ P L SR V+I+ P Sbjct: 239 QFFAKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFTWGLQVEITPP 298 Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233 D + ++ + + ID YI +++ ++ E + K+ A I + Sbjct: 299 DLETRIAILRRKAEAEGLVIDDNTLDYIASQVDTNIRELEGALVKVQAYATIERADINVN 358 Query: 234 LAAEVL 239 LA E L Sbjct: 359 LAREAL 364 >gi|329942825|ref|ZP_08291604.1| chromosomal replication initiator protein DnaA [Chlamydophila psittaci Cal10] gi|332287417|ref|YP_004422318.1| chromosomal replication initiator protein [Chlamydophila psittaci 6BC] gi|313847997|emb|CBY16994.1| chromosomal replication initiator protein [Chlamydophila psittaci RD1] gi|325506740|gb|ADZ18378.1| chromosomal replication initiator protein [Chlamydophila psittaci 6BC] gi|328815085|gb|EGF85074.1| chromosomal replication initiator protein DnaA [Chlamydophila psittaci Cal10] gi|328914665|gb|AEB55498.1| chromosomal replication initiator protein DnaA [Chlamydophila psittaci 6BC] Length = 460 Score = 108 bits (271), Expect = 7e-22, Method: Composition-based stats. Identities = 33/238 (13%), Positives = 77/238 (32%), Gaps = 34/238 (14%) Query: 34 RCLGISRDDLLVHSAIEQAVRLI-------DSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 ++ + LV + R++ + +P + L GP GSGK+ L + Sbjct: 104 VNPEMTFANFLVTPENDLPFRILQEFTKPAEDATGFPFNPIYLFGPEGSGKTHLMQAAVN 163 Query: 87 ---KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDF---NDTQ 125 +S + L+ + + +EDI++ + Sbjct: 164 VLRESGGKILYVASDLFTEHLVSAIRSGEMQRFRSFYRNVDALFIEDIEVFSGKGATQEE 223 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 FH NS+ +++++ P L SR + V I + L +++ Sbjct: 224 FFHTFNSLQTEGKLIVISSAYAPADLKAMEERLISRFEWGVAVPIHPLTKEGLRSFLMRQ 283 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 I I+ +++ + + ++ + + L+ ++L E Sbjct: 284 TEQLSIRIEDSALDFLIHALSSDMKALLHALNLL------SKRVAYKKLSQQLLYEDD 335 >gi|325685106|gb|EGD27237.1| DNA-directed DNA replication initiator protein [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 454 Score = 108 bits (271), Expect = 7e-22, Method: Composition-based stats. Identities = 37/254 (14%), Positives = 83/254 (32%), Gaps = 26/254 (10%) Query: 15 KQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVG 71 + K ++ + + + + ++ + + A + P + + G Sbjct: 99 QAKPEKARPQGREFTKDLRLNEKYTFENFIQGEGNKLAAGAALAVADNPGTFYNPLFIFG 158 Query: 72 PSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI--------------------DTRKPV 111 G GK+ L + + R + S T + Sbjct: 159 GVGLGKTHLMQAIGHQMLAERPDAKVVYIQSETFVNDFINSIKNKTQDKFREKYRTADLL 218 Query: 112 LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168 L++DI + + FH +++ ++MT+ P L SR V Sbjct: 219 LVDDIQFFAKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFAWGLQV 278 Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228 +I+ PD + ++ K + ID+ Y+ +++ ++ E + K+ A + Sbjct: 279 EITPPDLETRIAILRKKAESEGLEIDESTLDYVASQVDTNIRELEGALVKVQAQATIQKQ 338 Query: 229 GITRSLAAEVLKET 242 I LA L + Sbjct: 339 DINIGLARSALADL 352 >gi|313835170|gb|EFS72884.1| replication initiator protein DnaA [Propionibacterium acnes HL037PA2] gi|314929146|gb|EFS92977.1| replication initiator protein DnaA [Propionibacterium acnes HL044PA1] gi|314970905|gb|EFT15003.1| replication initiator protein DnaA [Propionibacterium acnes HL037PA3] gi|328905785|gb|EGG25561.1| chromosomal replication initiator protein DnaA [Propionibacterium sp. P08] Length = 500 Score = 108 bits (271), Expect = 7e-22, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 85/234 (36%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91 + D ++ ++ A + P + +++ G SG GK+ L + S Sbjct: 164 NPKYTFDSFVIGASNRFAHAAAVAVAEAPGKSYNPLLIYGGSGLGKTHLLHAIGRYVMSY 223 Query: 92 R--FSNIAKSLDSILIDTRKPV------------------LLEDIDLLDF---NDTQLFH 128 S + + D + L++DI L+ + FH Sbjct: 224 YDNVKVKYVSTEELTNDFINAIGTNRTREFRRSYRDVDVLLVDDIQFLESKIQTQEEFFH 283 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H ++MT+ P P L SR + + I PD + ++ + A Sbjct: 284 TFNTLHNAQKQIVMTSDRPPKLLEALEPRLRSRFEWGLLTDIQPPDLETRIAILRRKVAA 343 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +I ++ + +I R+ ++ E + ++ A + SLA VLK+ Sbjct: 344 EKITVEPDVLEFIASRIHTNIRELEGALIRVTAFASLNQQPVDTSLAEVVLKDL 397 >gi|300811995|ref|ZP_07092451.1| chromosomal replication initiator protein DnaA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497021|gb|EFK32087.1| chromosomal replication initiator protein DnaA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 454 Score = 108 bits (271), Expect = 7e-22, Method: Composition-based stats. Identities = 37/254 (14%), Positives = 83/254 (32%), Gaps = 26/254 (10%) Query: 15 KQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVG 71 + K ++ + + + + ++ + + A + P + + G Sbjct: 99 QAKPEKARPQGREFTKDLRLNEKYTFENFIQGEGNKLAAGAALAVADNPGTFYNPLFIFG 158 Query: 72 PSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI--------------------DTRKPV 111 G GK+ L + + R + S T + Sbjct: 159 GVGLGKTHLMQAIGHQMLAERPDAKVVYIQSETFVNDFINSIKNKTQDKFREKYRTADLL 218 Query: 112 LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168 L++DI + + FH +++ ++MT+ P L SR V Sbjct: 219 LVDDIQFFAKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFAWGLQV 278 Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228 +I+ PD + ++ K + ID+ Y+ +++ ++ E + K+ A + Sbjct: 279 EITPPDLETRIAILRKKAESEGLEIDESTLDYVASQVDTNIRELEGALVKVQAQATIQKQ 338 Query: 229 GITRSLAAEVLKET 242 I LA L + Sbjct: 339 DINIGLARSALADL 352 >gi|313122776|ref|YP_004033035.1| chromosomal replication initiator protein dnaa [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279339|gb|ADQ60058.1| Chromosomal replication initiator protein dnaA [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 454 Score = 108 bits (271), Expect = 7e-22, Method: Composition-based stats. Identities = 37/254 (14%), Positives = 83/254 (32%), Gaps = 26/254 (10%) Query: 15 KQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVG 71 + K ++ + + + + ++ + + A + P + + G Sbjct: 99 QAKPEKARPQGREFTKDLRLNEKYTFENFIQGEGNKLAAGAALAVADNPGTFYNPLFIFG 158 Query: 72 PSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI--------------------DTRKPV 111 G GK+ L + + R + S T + Sbjct: 159 GVGLGKTHLMQAIGHQMLAERPDAKVVYIQSETFVNDFINSIKNKTQDKFREKYRTADLL 218 Query: 112 LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168 L++DI + + FH +++ ++MT+ P L SR V Sbjct: 219 LVDDIQFFAKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFAWGLQV 278 Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228 +I+ PD + ++ K + ID+ Y+ +++ ++ E + K+ A + Sbjct: 279 EITPPDLETRIAILRKKAESEGLEIDESTLDYVASQVDTNIRELEGALVKVQAQATIQKQ 338 Query: 229 GITRSLAAEVLKET 242 I LA L + Sbjct: 339 DINIGLARSALADL 352 >gi|312126263|ref|YP_003991137.1| chromosomal replication initiator protein dnaa [Caldicellulosiruptor hydrothermalis 108] gi|311776282|gb|ADQ05768.1| chromosomal replication initiator protein DnaA [Caldicellulosiruptor hydrothermalis 108] Length = 454 Score = 108 bits (271), Expect = 7e-22, Method: Composition-based stats. Identities = 43/266 (16%), Positives = 93/266 (34%), Gaps = 38/266 (14%) Query: 6 EDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLI----DSWPS 61 E Y F+ KQ QL + + +V + A ++ P Sbjct: 92 EKYKKFLKPKQDEKP--EIVTQL------NPKYTFETFVVGNNNRLAHAAALAVAETPPG 143 Query: 62 W-PSRVVILVGPSGSGKSCLANIWSDK------------------SRSTRFSNIAKSLDS 102 + + G G GK+ L + + + + D Sbjct: 144 ERTYNPLFIYGGVGLGKTHLMHAIGHHVLKLYPGTKVMYVTSEIFTNELIAAIRDEKTDE 203 Query: 103 ILIDTRKP--VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 + R +L++DI L + + FH N++++ + +++++ P Sbjct: 204 FRLKYRNVDVLLIDDIQFLGGKERTQEEFFHTFNTLYEANKKIILSSDRPPKEINTLEDR 263 Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 L SR + + I PD + ++ K + + + +I ++E ++ E ++ Sbjct: 264 LRSRFEWGLITDIQPPDFETRIAILSKKCQLEGTPVPQHILEFIASKIETNIRELEGALN 323 Query: 218 KMDNLA--LSRGMGITRSLAAEVLKE 241 K+ + ++ IT LA + LKE Sbjct: 324 KILAYSKLMAPDKEITLELAEKALKE 349 >gi|297181712|gb|ADI17894.1| ATPase involved in DNA replication initiation [uncultured Chloroflexi bacterium HF0200_06I16] Length = 451 Score = 108 bits (271), Expect = 7e-22, Method: Composition-based stats. Identities = 36/232 (15%), Positives = 83/232 (35%), Gaps = 24/232 (10%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91 S D + + A+ + +P + L SG GK+ L + S Sbjct: 118 NPKYSFDSFVAGPSNRLALSASQTVSEFPGQSYNPLYLHSASGLGKTHLLQSIGKRCASR 177 Query: 92 RFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFHII 130 S + + + + + LL+D+ L + FH Sbjct: 178 GLSVLYVTSEQFTNEFITAIRNRTTEDFRRRYRSVQVLLLDDVQFLSGKEQTHEGFFHTF 237 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N +H + +++++ P + L SR + + I PD + ++ + + Sbjct: 238 NELHNSGNQVVISSDRAPKALDSIEDRLRSRFEGGLIADIQPPDLETRMSILANKAVELR 297 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + ++ + I +R++R++ E +++M + + IT ++L E Sbjct: 298 VNLESNVIELIAKRIQRNVRELEGSLNRMVAYSQLMNVNITLESTLQILNEM 349 >gi|104773258|ref|YP_618238.1| chromosomal replication initiation protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116513229|ref|YP_812135.1| chromosomal replication initiation protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122276000|sp|Q04CX5|DNAA_LACDB RecName: Full=Chromosomal replication initiator protein DnaA gi|122984030|sp|Q1GC43|DNAA_LACDA RecName: Full=Chromosomal replication initiator protein DnaA gi|103422339|emb|CAI96847.1| Chromosomal replication initiator protein dnaA [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116092544|gb|ABJ57697.1| DNA replication ATPase initiation [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325124856|gb|ADY84186.1| Chromosomal replication initiator protein dnaA [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 454 Score = 108 bits (271), Expect = 7e-22, Method: Composition-based stats. Identities = 37/254 (14%), Positives = 83/254 (32%), Gaps = 26/254 (10%) Query: 15 KQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVG 71 + K ++ + + + + ++ + + A + P + + G Sbjct: 99 QAKPEKARPQGREFTKDLRLNEKYTFENFIQGEGNKLAAGAALAVADNPGTFYNPLFIFG 158 Query: 72 PSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI--------------------DTRKPV 111 G GK+ L + + R + S T + Sbjct: 159 GVGLGKTHLMQAIGHQMLAERPDAKVVYIQSETFVNDFINSIKNKTQDKFREKYRTADLL 218 Query: 112 LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168 L++DI + + FH +++ ++MT+ P L SR V Sbjct: 219 LVDDIQFFAKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFAWGLQV 278 Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228 +I+ PD + ++ K + ID+ Y+ +++ ++ E + K+ A + Sbjct: 279 EITPPDLETRIAILRKKAESEGLEIDESTLDYVASQVDTNIRELEGALVKVQAQATIQKQ 338 Query: 229 GITRSLAAEVLKET 242 I LA L + Sbjct: 339 DINIGLARSALADL 352 >gi|260101878|ref|ZP_05752115.1| DNA-directed DNA replication initiator protein [Lactobacillus helveticus DSM 20075] gi|260084306|gb|EEW68426.1| DNA-directed DNA replication initiator protein [Lactobacillus helveticus DSM 20075] Length = 500 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 40/246 (16%), Positives = 86/246 (34%), Gaps = 26/246 (10%) Query: 20 QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSG 76 Q K +Q + + D+ + + A + P + + G G G Sbjct: 150 QEKRAPKQFTKNLKLNEKYTFDNFVQGEGNKLAAGAALAVADSPGSFYNPLFIFGGVGLG 209 Query: 77 KSCLANIW-----SDKSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDI 116 K+ L +++ + +++ + I++ K +L++DI Sbjct: 210 KTHLMQAIGHQMLAERPNAKVVYIQSETFVNDFINSIKNKTQDQFREKYRTCDLLLVDDI 269 Query: 117 DLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 + + FH +++ ++MT+ P L SR V+I+ P Sbjct: 270 QFFAKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFTWGLQVEITPP 329 Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233 D + ++ + + ID YI +++ ++ E + K+ A I + Sbjct: 330 DLETRIAILRRKAEAEGLVIDDNTLDYIASQVDTNIRELEGALVKVQAYATIERADINVN 389 Query: 234 LAAEVL 239 LA E L Sbjct: 390 LAREAL 395 >gi|113866032|ref|YP_724521.1| chromosomal replication initiation protein [Ralstonia eutropha H16] gi|123033387|sp|Q0KFR8|DNAA_CUPNH RecName: Full=Chromosomal replication initiator protein DnaA gi|113524808|emb|CAJ91153.1| chromosomal replication initiator protein DnaA [Ralstonia eutropha H16] Length = 588 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 41/257 (15%), Positives = 93/257 (36%), Gaps = 33/257 (12%) Query: 12 VPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VI 68 +P Q +D + ++ D+ + A + A + P + + Sbjct: 238 MPGHQPSDTVHERSR-------LNPILTFDNFVTGKANQLARAAAIQVANNPGKSYNPLY 290 Query: 69 LVGPSGSGKSCLANIWSD-------KSRSTRFSNIAKSLDSILIDTRKP----------- 110 L G G GK+ L + + ++R D + RK Sbjct: 291 LYGGVGLGKTHLIHAIGNFMLLENPRARIRYIHAEQYVSDVVKAYQRKAFDEFKRYYHSL 350 Query: 111 --VLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 +L++DI + F+ ++ + +++T+ T+P L SR + Sbjct: 351 DLLLIDDIQFFSGKNRTQEEFFYAFEALIANRAQVIITSDTYPKEISGIDDRLISRFDSG 410 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 V I P+ + +++K A + + +++A ++ + + ++ E + K+ + Sbjct: 411 LTVAIEPPELEMRVAILMKKAAAENVNVPEEVAFFVAKHLRSNVRELEGALRKILAFSNF 470 Query: 226 RGMGITRSLAAEVLKET 242 G IT + E LK+ Sbjct: 471 HGKDITIEVTREALKDL 487 >gi|332662000|ref|YP_004444788.1| Chromosomal replication initiator protein dnaA [Haliscomenobacter hydrossis DSM 1100] gi|332330814|gb|AEE47915.1| Chromosomal replication initiator protein dnaA [Haliscomenobacter hydrossis DSM 1100] Length = 488 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 49/261 (18%), Positives = 88/261 (33%), Gaps = 41/261 (15%) Query: 10 FFVPD--KQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPS 64 F +P K K D QL D+ + A I P S Sbjct: 133 FVIPGIKKMKVDP------QL------NPNYRFDNYIEGDCNRLARSAGHAISRKPGQTS 180 Query: 65 -RVVILVGPSGSGKSCLANIWSDK-----SRSTRFSNIAKSLDSILIDTRKPVLLED--- 115 +++ G G GK+ LA ++ T ++ + +I K + D Sbjct: 181 FNPLVIFGNVGLGKTHLAQAIGNEILDKFPTKTVLYVSSEKFTNQIIAGIKNNAINDVVT 240 Query: 116 ----IDLLDFNDTQL-----------FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 ID+L +D Q FHI N +HQ +++T+ P L S Sbjct: 241 FYQLIDVLIVDDIQFLEGKKKTQDIFFHIFNQLHQNGKQIILTSDRPPKDLQDMEERLIS 300 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 R K + PD + ++ + I + + +I ++ ++ E ++ + Sbjct: 301 RFKWGLSADLQAPDLETRIAILEYKMMQEGVEIAQDVTEFICYNIKNNIRELEGVLISLI 360 Query: 221 NLALSRGMGITRSLAAEVLKE 241 + I LA EV++ Sbjct: 361 AQSSLNRREIDIDLAKEVVRN 381 >gi|332971204|gb|EGK10167.1| DNA-directed DNA replication initiator protein DnaA [Desmospora sp. 8437] Length = 460 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 90/234 (38%), Gaps = 27/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD--KSR 89 + D ++ S A + P++ + + G G GK+ L + + +S Sbjct: 122 NSRYTFDTFVIGSGNRFAHAASLAVAEAPAKSYNPLFIYGGVGLGKTHLMHAIGNYVQSH 181 Query: 90 STRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFH 128 ST + S ++ + + L++DI L + + FH Sbjct: 182 STHTRVVYLSSETFTNEFINSIRDNRADDFRNRYRNVDILLIDDIQFLAGKEQTQEEFFH 241 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H +++++ P + L SR + + I PD + ++ K Sbjct: 242 TFNALHGESKQIVISSDRPPKAIPTLEDRLRSRFEWGLITDIQPPDLETRIAILRKKAIA 301 Query: 189 RQIFI-DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I + ++ A+I R+E ++ E + ++ + +T LAAE LK+ Sbjct: 302 DNLEINNSEVMAFIADRVETNIRELEGALIRVVAYSALTNQPVTVELAAEALKD 355 >gi|297184288|gb|ADI20405.1| ATPase involved in DNA replication initiation [uncultured alpha proteobacterium EB080_L43F08] Length = 451 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 39/272 (14%), Positives = 91/272 (33%), Gaps = 39/272 (14%) Query: 11 FVPDKQKNDQPKNKEEQL-FFSFP---RCLGISRDDLLVHSAIEQAVRLIDSWPSW---P 63 P K+ + +P+ K + P + D+ +V E A Sbjct: 84 ITPAKKSSTKPEAKNTKTGSTDLPGASLDPRYTFDNFVVGKPNELAHAAARRVAEGDDVS 143 Query: 64 SRVVILVGPSGSGKSCLANIWS-----DKSRSTRFSNIAKSLDSILIDTRK--------- 109 + L G G GK+ L + + + A+ + + Sbjct: 144 FNPLFLHGGVGLGKTHLMHAIAWEIKKRDPNARVLYLSAEQFMYRFVQALRFKDTISFKE 203 Query: 110 ------PVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LC 159 ++++D+ + + FH N++ + ++++ PV L D + Sbjct: 204 MFRSVDVLMVDDVQFIAGKSSTQEEFFHTFNALIDQNKQVIISGDRAPVDME-QLEDRIK 262 Query: 160 SRLKAATVVKISLPDDDFLEKVIVKMFADRQ------IFIDKKLAAYIVQRMERSLVFAE 213 SRL+ VV + D + ++ + Q + + + ++ QR+ ++ E Sbjct: 263 SRLQWGLVVDVHPTDYELRLGILQSK-QESQARYNSTVEVSPGVLEFMAQRISSNVRVLE 321 Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 + ++ G +T +A E L + + Sbjct: 322 GALTRLYAFGSLVGRPVTLEMAQESLSDILRA 353 >gi|213690929|ref|YP_002321515.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum subsp. infantis ATCC 15697] gi|254777888|sp|B7GSF9|DNAA_BIFLS RecName: Full=Chromosomal replication initiator protein DnaA gi|213522390|gb|ACJ51137.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum subsp. infantis ATCC 15697] gi|291517733|emb|CBK71349.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum subsp. longum F8] gi|320456975|dbj|BAJ67596.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 500 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 85/235 (36%), Gaps = 31/235 (13%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWS------DKS 88 + D + + A + + + + G SG GK+ L N D Sbjct: 161 FTFDSFVPGDSNRFARTVALAVAEGSGQDFNPLCIYGGSGLGKTHLLNAIGNYALVKDPG 220 Query: 89 RSTRFSNIAKSLDSILIDTRKP-------------------VLLEDIDLLDFNDTQL--- 126 R+ + + + + P +L++DI L + L Sbjct: 221 LKVRYVTSEEFTNEFIDALQNPNQSQGQIAEFNRRYRQVDVLLIDDIQFLGGKEATLDQF 280 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH N++HQ + +++ + P + L SR ++ V + PD + ++ + Sbjct: 281 FHTFNALHQANKRIVIASDVAPKNLKGFEARLISRFESGLTVDVKPPDLETRIAILRMIA 340 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I + I +R ++ E + ++ +A +TR+LA + L++ Sbjct: 341 SMNGSKIPSDVLDLIAERFTENIRELEGALTRVTAVASLSNQPVTRALAEQTLQD 395 >gi|311748263|ref|ZP_07722048.1| DNA replication initiator protein, ATPase [Algoriphagus sp. PR1] gi|126576758|gb|EAZ81006.1| DNA replication initiator protein, ATPase [Algoriphagus sp. PR1] Length = 472 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 81/235 (34%), Gaps = 29/235 (12%) Query: 35 CLGISRDDLLVHSAIEQA----VRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--- 87 + + A + +++ G G GK+ L ++ Sbjct: 134 NPNYTFSAYIEGDCNRLARSAGFAVATKPGITSFNPLMVYGGVGLGKTHLVQAIGNEIKN 193 Query: 88 ----------SRSTRFSNIAKSLDSILIDT-------RKPVLLEDIDLLDFND---TQLF 127 S + S+ + + ++++DI L D F Sbjct: 194 GPEDKFVLYVSSEKFVNQFMDSIKDGNVKSFTNFYMQVDVLIIDDIQFLAGKDRTQEMFF 253 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 HI N +HQ ++MT+ P L SR K + +PD + +I + Sbjct: 254 HIFNHLHQNKKQIIMTSDCPPRDLKGLEERLLSRFKWGLTADLQMPDFETRVAIIRRKMQ 313 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNLALSRGMGITRSLAAEVLKE 241 IFI + Y+ ++ ++ E ++ + + +LSR + I+ LA V+K Sbjct: 314 SEGIFIPDDVVEYLAYTVDTNVRELEGILISLIAHASLSR-VEISLELAKTVMKN 367 >gi|254447382|ref|ZP_05060848.1| chromosomal replication initiator protein DnaA [gamma proteobacterium HTCC5015] gi|198262725|gb|EDY87004.1| chromosomal replication initiator protein DnaA [gamma proteobacterium HTCC5015] Length = 458 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 39/243 (16%), Positives = 81/243 (33%), Gaps = 27/243 (11%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLAN 82 Q + G + D + + + A P + L G G GK+ L + Sbjct: 115 QPPVNHNLEAGHTFDSFVEGKSNQMAKAAAQHVAQAPGDGYYNPLFLYGGVGLGKTHLMH 174 Query: 83 IWSDK-------------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFN 122 ++ K+L ID + +L++DI Sbjct: 175 AVGHAILERNPKARVVYLHSERFVGDMVKALQHNAIDEFKRLYRSVDALLIDDIQFFAGK 234 Query: 123 D---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179 + + FH N++ + +++T +P L SR V I P+ + Sbjct: 235 ERSQEEFFHTFNALLERKQQMILTCDRYPKEVNGLEERLKSRFGWGLTVAIEPPELEERV 294 Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 ++ + + +A +I Q++ ++ E + ++ + G IT A E L Sbjct: 295 AILKSKAEIANVDMKDDVAFFIAQKVRSNVRELEGAMKRVIVNSQFTGREITVDFAREQL 354 Query: 240 KET 242 ++ Sbjct: 355 RDQ 357 >gi|23465223|ref|NP_695826.1| chromosomal replication initiation protein [Bifidobacterium longum NCC2705] gi|189440298|ref|YP_001955379.1| chromosomal replication initiation protein [Bifidobacterium longum DJO10A] gi|227547513|ref|ZP_03977562.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239622843|ref|ZP_04665874.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312133632|ref|YP_004000971.1| dnaa [Bifidobacterium longum subsp. longum BBMN68] gi|317482359|ref|ZP_07941379.1| chromosomal replication initiator protein DnaA [Bifidobacterium sp. 12_1_47BFAA] gi|322688192|ref|YP_004207926.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum subsp. infantis 157F] gi|322690194|ref|YP_004219764.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum subsp. longum JCM 1217] gi|38257643|sp|Q8G6K0|DNAA_BIFLO RecName: Full=Chromosomal replication initiator protein DnaA gi|226735779|sp|B3DP22|DNAA_BIFLD RecName: Full=Chromosomal replication initiator protein DnaA gi|23325851|gb|AAN24462.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum NCC2705] gi|189428733|gb|ACD98881.1| ATPase for DNA replication initiation [Bifidobacterium longum DJO10A] gi|227212028|gb|EEI79924.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239514840|gb|EEQ54707.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum subsp. infantis CCUG 52486] gi|311772890|gb|ADQ02378.1| DnaA [Bifidobacterium longum subsp. longum BBMN68] gi|316916239|gb|EFV37641.1| chromosomal replication initiator protein DnaA [Bifidobacterium sp. 12_1_47BFAA] gi|320455050|dbj|BAJ65672.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum subsp. longum JCM 1217] gi|320459528|dbj|BAJ70148.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum subsp. infantis 157F] Length = 500 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 85/235 (36%), Gaps = 31/235 (13%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWS------DKS 88 + D + + A + + + + G SG GK+ L N D Sbjct: 161 FTFDSFVPGDSNRFARTVALAVAEGSGQDFNPLCIYGGSGLGKTHLLNAIGNYALVKDPG 220 Query: 89 RSTRFSNIAKSLDSILIDTRKP-------------------VLLEDIDLLDFNDTQL--- 126 R+ + + + + P +L++DI L + L Sbjct: 221 LKVRYVTSEEFTNEFIDALQNPNQSQGQIAEFNRRYRQVDVLLIDDIQFLGGKEATLDQF 280 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH N++HQ + +++ + P + L SR ++ V + PD + ++ + Sbjct: 281 FHTFNALHQANKRIVIASDVAPKNLKGFEARLISRFESGLTVDVKPPDLETRIAILRMIA 340 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I + I +R ++ E + ++ +A +TR+LA + L++ Sbjct: 341 SMNGSKIPSDVLDLIAERFTENIRELEGALTRVTAVASLSNQPVTRALAEQTLQD 395 >gi|325980882|ref|YP_004293284.1| chromosomal replication initiator protein DnaA [Nitrosomonas sp. AL212] gi|325530401|gb|ADZ25122.1| chromosomal replication initiator protein DnaA [Nitrosomonas sp. AL212] Length = 474 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 86/234 (36%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGPSGSGKSCLANIWSD----- 86 + D+ + A + A + P + + G G GK+ L + Sbjct: 140 NPNFTFDNFITGKANQLARAGAIQVAESPGVAYNPLFIYGGVGLGKTHLIQAIGNYVHEN 199 Query: 87 -KSRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128 KS R+ + K + ++ + +L++D+ + F+ Sbjct: 200 NKSAKIRYVHAEKYVSDVVSAYQHKAFDKFKLYYHSLDLLLVDDVQFFGGKNRTQEEFFY 259 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++ + +++T T+P L SR V + P+ + +++K Sbjct: 260 AFNALIETHKQVIITCDTYPKEITGLEERLVSRFGWGLTVAVEPPELEMRVAILLKKAEM 319 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +I +D+ +A +I + + ++ E + ++ + IT LA E LK+ Sbjct: 320 EKIRLDENVAFFIAKHIRSNVRELEGALKRVLAFSRFVNQDITLDLAKEALKDL 373 >gi|312794750|ref|YP_004027672.1| Chromosomal replication initiator protein dnaA [Burkholderia rhizoxinica HKI 454] gi|312166525|emb|CBW73528.1| Chromosomal replication initiator protein dnaA [Burkholderia rhizoxinica HKI 454] Length = 530 Score = 108 bits (270), Expect = 9e-22, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 88/234 (37%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIW-----SD 86 ++ ++ + A + A P + L G G GK+ L + D Sbjct: 196 NPVLTFENFVTGKANQLARAAAIQVADNPGVSYNPLFLYGGVGLGKTHLIHAIGNQLLQD 255 Query: 87 KSRST-RFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128 K+ + R+ + + + ++ + +L++DI + F+ Sbjct: 256 KANARIRYIHAEQYVSDVVKAYQRKAFDEFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 315 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + +++T+ T+P L SR + V I P+ + ++++ Sbjct: 316 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 375 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + +++ +A ++ + + ++ E + K+ + G IT L E LK+ Sbjct: 376 EGVALNEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDL 429 >gi|254490242|ref|ZP_05103432.1| chromosomal replication initiator protein DnaA [Methylophaga thiooxidans DMS010] gi|224464589|gb|EEF80848.1| chromosomal replication initiator protein DnaA [Methylophaga thiooxydans DMS010] Length = 418 Score = 108 bits (270), Expect = 9e-22, Method: Composition-based stats. Identities = 43/252 (17%), Positives = 92/252 (36%), Gaps = 27/252 (10%) Query: 18 NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPS 73 N +P + + P + D + + + A P + L G + Sbjct: 66 NSKPSETKAEPAIGNPMNPLFTFDSYVEGKSNQIARAASLHVAEAPGTSGYNPLFLYGGT 125 Query: 74 GSGKSCLANIWSDK-------------SRSTRFSNIAKSLDSILID-------TRKPVLL 113 G GK+ L +K S ++ +L + ID + +L+ Sbjct: 126 GLGKTHLMLAVGNKIKQDNPKARVIYLSSERFVQDMITALRNNAIDQFKSHYRSADALLI 185 Query: 114 EDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 +DI + + F+ NS+ + +++T FP L SRL V I Sbjct: 186 DDIQFFAKKERSQEEFFYTFNSLLEGQRQIILTCDRFPKEVENLDERLQSRLGWGLTVAI 245 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 P+ + +++K I + + +A +I +R++ ++ E + ++ + + Sbjct: 246 EPPELETRVAILIKKAQQNLITLPEDVAFFIAKRIKSNVRDLEGALQRVLAFSRFTNQPL 305 Query: 231 TRSLAAEVLKET 242 + +A E LK+ Sbjct: 306 SIDMAQEALKDL 317 >gi|238025685|ref|YP_002909916.1| chromosomal replication initiator protein DnaA [Burkholderia glumae BGR1] gi|237874879|gb|ACR27212.1| Chromosomal replication initiator protein DnaA [Burkholderia glumae BGR1] Length = 534 Score = 108 bits (270), Expect = 9e-22, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 87/234 (37%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWS-----D 86 ++ D+ + A + A P + L G G GK+ L + D Sbjct: 200 NPVLTFDNFVTGKANQLARAAAIQVADNPGVSYNPLFLYGGVGLGKTHLIHAIGNQLLLD 259 Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128 KS + A+ S ++ + +D +DLL +D + F+ Sbjct: 260 KSGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 319 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + +++T+ T+P L SR + V I P+ + ++++ Sbjct: 320 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 379 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + +A ++ + + ++ E + K+ + G I+ L E LK+ Sbjct: 380 EGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREISIELTKEALKDL 433 >gi|332882720|ref|ZP_08450331.1| replication initiator protein DnaA [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679222|gb|EGJ52208.1| replication initiator protein DnaA [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 473 Score = 108 bits (270), Expect = 9e-22, Method: Composition-based stats. Identities = 45/273 (16%), Positives = 92/273 (33%), Gaps = 47/273 (17%) Query: 10 FFVPDKQK-NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-- 66 F +P ++ P+ Q + D+ + + A + + P Sbjct: 118 FVIPGIREITVDPQLNLHQ-----------NFDNFVEGESNRLARSAGIAVANKPGGTAF 166 Query: 67 --VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDS----- 102 + + G G GK+ LA+ ++K S Sbjct: 167 NPLFIFGGVGLGKTHLAHAIGVDIKEKYPKKKVLYVSAEKFTQQFISASTAKDKDKNNLN 226 Query: 103 ---ILIDTRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156 ++++DI L FHI N +HQ +++T+ PV Sbjct: 227 DFIHFYQLIDVLIVDDIQFLSGKVKTQDAFFHIFNHLHQTGKQVILTSDKAPVDLFDIEQ 286 Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216 L SR K +++ PD + K++ F I + + AY+ + + ++ E + Sbjct: 287 RLLSRFKWGLSAELTTPDYNTRYKILQNKFYTDGAEISEDIIAYLAENIRTNVRELEGVS 346 Query: 217 DKMDNLALSRGMGITRSLAAEVLKET---QQCD 246 + + A + LA +++++ QCD Sbjct: 347 NSLIAQAAFNRKEYSIELAQSIIEKSVKNSQCD 379 >gi|227502242|ref|ZP_03932291.1| chromosomal replication initiation protein [Corynebacterium accolens ATCC 49725] gi|227077066|gb|EEI15029.1| chromosomal replication initiation protein [Corynebacterium accolens ATCC 49725] Length = 382 Score = 108 bits (270), Expect = 9e-22, Method: Composition-based stats. Identities = 37/255 (14%), Positives = 95/255 (37%), Gaps = 36/255 (14%) Query: 17 KNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE----QAVRLIDSWPSWPSRVVILVGP 72 + + + + + + ++ S+ AV + ++ P+ + + G Sbjct: 29 REAPAHDPNRETSLN----PKHTFESFVIGSSNRFANGAAVAVAEN-PARAYNPLFIWGG 83 Query: 73 SGSGKSCLANIWSDKSRSTRFSN------------IAKSLDSILIDTRKP---------- 110 SG GK+ L + + + + ++S+ D ++ Sbjct: 84 SGLGKTHLLH--AAGNYAQVLHPGLRVKYVSSEEFTNDYINSLRDDRQESFKRRYRNLDI 141 Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 ++++DI L+ + + FH N++HQ + +++++ P L +R + + Sbjct: 142 LMVDDIQFLEGKESTQEEFFHTFNALHQANKQIILSSDRPPKQLTTLEDRLRTRFEGGLI 201 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 I PD + +++K A +D+ + I R E S+ E + ++ + Sbjct: 202 TDIQPPDLETRIAILMKKAAADGTEVDRSVLELIASRFESSIRELEGALIRVSAYSSLVN 261 Query: 228 MGITRSLAAEVLKET 242 I +A L++ Sbjct: 262 EPINVEMAEIALRDL 276 >gi|78776202|ref|YP_392517.1| chromosomal replication initiation protein [Sulfurimonas denitrificans DSM 1251] gi|123768675|sp|Q30UP9|DNAA_SULDN RecName: Full=Chromosomal replication initiator protein DnaA gi|78496742|gb|ABB43282.1| chromosomal replication initiator protein, DnaA [Sulfurimonas denitrificans DSM 1251] Length = 435 Score = 108 bits (270), Expect = 9e-22, Method: Composition-based stats. Identities = 43/270 (15%), Positives = 100/270 (37%), Gaps = 30/270 (11%) Query: 2 NLMKEDYSFFVPDKQKNDQPKNKE---EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDS 58 N +K D S + ++ ++ + + K +Q + ++ +V + + A + S Sbjct: 68 NSIKVDVSILLKNQVESKKAEQKSVQKQQHSL---LNPSHTFENFMVGGSNQFAYAAVKS 124 Query: 59 WPSWPS---RVVILVGPSGSGKSCLAN----IWSDKSRSTRFSNIAKSLDSILIDTRK-- 109 + + G G GK+ L ++ ++ + ++ + + L+ + R Sbjct: 125 VSEKAGVLYNPLFIHGGVGLGKTHLMQAAGNVFQNQGKVVIYTTVEQFLNDFIRHVRNKT 184 Query: 110 ------------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 +L++DI L + + FH ++ +++TA P Sbjct: 185 MERFQEKYRKCDVLLIDDIQFLSNKEGIQEEFFHTFEALKGVGKQIILTADKHPKKIAGL 244 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 L SR + V I P+ + +I ++ + K + YI +E ++ E Sbjct: 245 EKRLQSRFEHGLVADIQPPELETKIAIIENKCKINKVILTKDIIHYIATVIESNVREIEG 304 Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 ++ K+ + + I VLK+ Q Sbjct: 305 ILSKLHAYSQLMHVDIDLQFTKNVLKDQLQ 334 >gi|262200047|ref|YP_003271255.1| chromosomal replication initiator protein DnaA [Gordonia bronchialis DSM 43247] gi|262083394|gb|ACY19362.1| chromosomal replication initiator protein DnaA [Gordonia bronchialis DSM 43247] Length = 509 Score = 108 bits (270), Expect = 9e-22, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 85/235 (36%), Gaps = 28/235 (11%) Query: 35 CLGISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91 + D ++ ++ A + P+ + + G SG GK+ L + + Sbjct: 171 NPKYTFDTFVIGASNRFAHASAVAVSEAPARAYNPLFIWGESGLGKTHLLHA-AGHYAQR 229 Query: 92 RFSNI-----------AKSLDSILIDTRKP----------VLLEDIDLLDFND---TQLF 127 F + ++S+ D R +L++DI L + + F Sbjct: 230 LFPGMRVKYVSTEEFTNDFINSLRDDRRVAFKRRYRDVDVLLVDDIQFLMGKEGIQEEFF 289 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++H +++++ P L +R + + + PD + ++ K Sbjct: 290 HTFNTLHNASKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPDLETRIAILRKKAQ 349 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 I + + I ++ER++ E + ++ A + +SLA VL+ Sbjct: 350 MDNIAVPDDVLELIASKIERNIRELEGALIRVTAFASLNNAELDKSLADVVLQAL 404 >gi|163797310|ref|ZP_02191263.1| ATPase [alpha proteobacterium BAL199] gi|159177401|gb|EDP61957.1| ATPase [alpha proteobacterium BAL199] Length = 473 Score = 108 bits (270), Expect = 9e-22, Method: Composition-based stats. Identities = 41/265 (15%), Positives = 86/265 (32%), Gaps = 35/265 (13%) Query: 6 EDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW--- 62 E P +++ P + S P + + +V E A Sbjct: 115 EPLELSTPAVFRSNDPTD-----ALSAPLDPRFTFANFVVGKPNELAFAAARRVADSETV 169 Query: 63 PSRVVILVGPSGSGKSCLANIWS----------------------DKSRSTRFSNIAKSL 100 P + L G G GK+ L + + R+ RF + Sbjct: 170 PFNPLFLYGGVGLGKTHLMHAIAWNLREKHPQRRMLYMSAEKFMYQFIRALRFKDTVAFK 229 Query: 101 DSILIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 D L + ++++D+ + D + FH N++ + ++++A P Sbjct: 230 D--LFRSVDVLMIDDVQFISGKDSTQEEFFHTFNALVDRNRQVIISADKSPNDLDGLEER 287 Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 L SRL V I + ++ ++ I K+ ++ ++ ++ E ++ Sbjct: 288 LRSRLGWGLVADIHPTTYELRLGILQSKAERLEVSIPSKVLEFLAHKITSNVRELEGALN 347 Query: 218 KMDNLALSRGMGITRSLAAEVLKET 242 ++ G IT E L + Sbjct: 348 RIVAHTTLVGRPITIESTQEGLHDL 372 >gi|296115229|ref|ZP_06833870.1| chromosomal replication initiator protein DnaA [Gluconacetobacter hansenii ATCC 23769] gi|295978330|gb|EFG85067.1| chromosomal replication initiator protein DnaA [Gluconacetobacter hansenii ATCC 23769] Length = 484 Score = 107 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 40/254 (15%), Positives = 87/254 (34%), Gaps = 26/254 (10%) Query: 19 DQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSG 74 ++P+ E + + P + D +V E A PS + L G G Sbjct: 134 EEPRTAEVRSDLAAPLDPRFTFDTFVVGKPNEFAYACARRVAERPSSPGFNPLFLYGGVG 193 Query: 75 SGKSCLANIW-SDKSRSTRFSNIAKSLDSILIDTRKPV------------------LLED 115 GK+ L + S+ R R S S + + + +++D Sbjct: 194 LGKTHLMHAIGSELVREGRVSVAYMSAEKFMYRFIAAIRSQSTMEFKEQLRSVDVLMIDD 253 Query: 116 IDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 + L D + FH N++ ++++A P L +RL V I Sbjct: 254 LQFLIGKDNTQEEFFHTFNALVDAGRQIVVSADKSPSDLSGLEDRLRTRLGCGMVADIHA 313 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232 + ++ + + K+ ++ ++ ++ E ++++ A G +T Sbjct: 314 TTFELRISILEAKATASGVEVPAKVLEFLAHKITSNVRELEGALNRLIAHANLFGRPVTL 373 Query: 233 SLAAEVLKETQQCD 246 +VL + + + Sbjct: 374 ETTQDVLHDILKAN 387 >gi|291558311|emb|CBL35428.1| chromosomal replication initiator protein DnaA [Eubacterium siraeum V10Sc8a] Length = 466 Score = 107 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 35/240 (14%), Positives = 84/240 (35%), Gaps = 27/240 (11%) Query: 31 SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK 87 + D +V + A + PS + + G GK+ L + + Sbjct: 124 ELASNYQHTFDTFIVGDNNKLAYAACKAVVQEPSTRYNPLYIYSEPGLGKTHLLSAVKSE 183 Query: 88 SRST-----RFSNIAKSLDSILIDTRK----------------PVLLEDIDLLD---FND 123 A + + + +L++DI + Sbjct: 184 MEKLHPDMNIIYTTADTFTDDYVSNLRTKSNLEAFKQKYRSCDLLLIDDIQFMANKSETQ 243 Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 +LFH NS++ + ++ T+ P L SR + + I+ P+ + +I Sbjct: 244 QELFHTFNSLYNQNKQIIFTSDRPPKELNGIEQRLISRFEQGLLADIAPPEYETRIAIIK 303 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 + + + + ++ +++ ++ E + K++ L L G T ++A +V+++ Q Sbjct: 304 RKAELYGMNLPDSIVDFLADKLKTNIRQLEGAITKINALTLVTGSTPTLNMAQQVVRDIQ 363 >gi|291531951|emb|CBK97536.1| chromosomal replication initiator protein DnaA [Eubacterium siraeum 70/3] Length = 467 Score = 107 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 35/240 (14%), Positives = 84/240 (35%), Gaps = 27/240 (11%) Query: 31 SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK 87 + D +V + A + PS + + G GK+ L + + Sbjct: 125 ELASNYQHTFDTFIVGDNNKLAYAACKAVVQEPSTRYNPLYIYSEPGLGKTHLLSAVKSE 184 Query: 88 SRST-----RFSNIAKSLDSILIDTRK----------------PVLLEDIDLLD---FND 123 A + + + +L++DI + Sbjct: 185 MEKLHPDMNIIYTTADTFTDDYVSNLRTKSNLEAFKQKYRSCDLLLIDDIQFMANKSETQ 244 Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 +LFH NS++ + ++ T+ P L SR + + I+ P+ + +I Sbjct: 245 QELFHTFNSLYNQNKQIIFTSDRPPKELNGIEQRLISRFEQGLLADIAPPEYETRIAIIK 304 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 + + + + ++ +++ ++ E + K++ L L G T ++A +V+++ Q Sbjct: 305 RKAELYGMNLPDSIVDFLADKLKTNIRQLEGAITKINALTLVTGSTPTLNMAQQVVRDIQ 364 >gi|167751447|ref|ZP_02423574.1| hypothetical protein EUBSIR_02443 [Eubacterium siraeum DSM 15702] gi|167655693|gb|EDR99822.1| hypothetical protein EUBSIR_02443 [Eubacterium siraeum DSM 15702] Length = 467 Score = 107 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 35/240 (14%), Positives = 84/240 (35%), Gaps = 27/240 (11%) Query: 31 SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK 87 + D +V + A + PS + + G GK+ L + + Sbjct: 125 ELASNYQHTFDTFIVGDNNKLAYAACKAVVQEPSTRYNPLYIYSEPGLGKTHLLSAVKSE 184 Query: 88 SRST-----RFSNIAKSLDSILIDTRK----------------PVLLEDIDLLD---FND 123 A + + + +L++DI + Sbjct: 185 MEKLHPDMNIIYTTADTFTDDYVSNLRTKSNLEAFKQKYRSCDLLLIDDIQFMANKSETQ 244 Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 +LFH NS++ + ++ T+ P L SR + + I+ P+ + +I Sbjct: 245 QELFHTFNSLYNQNKQIIFTSDRPPKELNGIEQRLISRFEQGLLADIAPPEYETRIAIIK 304 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 + + + + ++ +++ ++ E + K++ L L G T ++A +V+++ Q Sbjct: 305 RKAELYGMNLPDSIVDFLADKLKTNIRQLEGAITKINALTLVTGSTPTLNMAQQVVRDIQ 364 >gi|126730156|ref|ZP_01745968.1| chromosomal replication initiation protein [Sagittula stellata E-37] gi|126709536|gb|EBA08590.1| chromosomal replication initiation protein [Sagittula stellata E-37] Length = 459 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 39/265 (14%), Positives = 94/265 (35%), Gaps = 32/265 (12%) Query: 12 VPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVI 68 +P+ ++ ++++QL + P + + D +V E A + Sbjct: 98 IPEAEQAPVTSSRDQQLPGA-PLDMRFTFDTFVVGKPNELAHAAARRVAEGGPVTFNPLF 156 Query: 69 LVGPSGSGKSCLANI--WSDKSRSTRFSNIAKSLDS------------------ILIDTR 108 L G G GK+ L + W R+ + + S + + + Sbjct: 157 LYGGVGLGKTHLMHAIAWELSQRNPGLTVLYLSAEQFMYRFVQALRERKMMDFKEMFRSV 216 Query: 109 KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 ++++D+ + D + FH N++ + ++++A P + SRL++ Sbjct: 217 DVLMVDDVQFIAGKDSTQEEFFHTFNALVDQNKQIIISADRAPDEIKDLENRIRSRLQSG 276 Query: 166 TVVKISLPDDDFLEKVIVKMFADR-----QIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 VV + D + ++ + ID + ++ R+ ++ E + ++ Sbjct: 277 LVVDLHPTDYELRLGILQSKVEVYRGMHPGLQIDDGVLEFLAHRISTNVRVLEGALTRLF 336 Query: 221 NLALSRGMGITRSLAAEVLKETQQC 245 A G I L + L + + Sbjct: 337 AFASLVGKPINMDLVQDSLADVLRA 361 >gi|317011662|gb|ADU85409.1| chromosomal replication initiation protein [Helicobacter pylori SouthAfrica7] Length = 455 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 85/235 (36%), Gaps = 24/235 (10%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS 90 + ++ +V S + P V+ G +G GK+ + N + + Sbjct: 108 VKDSYTFENFVVGSCNNTVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALE 167 Query: 91 TRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFN---DTQLFHI 129 + + + L D K + LL+D L + + FH Sbjct: 168 KHKKVVLVTSEDFLTDFLKHLDNKTMDSFKAKYRHCDFFLLDDAQFLQGKPKLEEEFFHT 227 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N +H + +++ + P + L SR + KI PD + ++ + Sbjct: 228 FNELHANNKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKIMPPDLETKLSIVKQKCQLN 287 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 QI + +++ YI Q + ++ E + K+ A I +LA VL++ Q+ Sbjct: 288 QIILPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNAPINLNLAKTVLEDLQK 342 >gi|260437689|ref|ZP_05791505.1| DNA replication initiator protein, ATPase [Butyrivibrio crossotus DSM 2876] gi|292809915|gb|EFF69120.1| DNA replication initiator protein, ATPase [Butyrivibrio crossotus DSM 2876] Length = 450 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 44/276 (15%), Positives = 85/276 (30%), Gaps = 36/276 (13%) Query: 2 NLMKEDYSFFV---PDKQKNDQ----PKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVR 54 N Y PD P L + + +V A Sbjct: 71 NFFDHSYDVRFISTPDLANPQPVVKEPVESLNSLIIKAGLNPKYTFETFVVGDNNNFAHA 130 Query: 55 LIDSWPSWPS---RVVILVGPSGSGKSCLANIW------SDKSRSTRFSNIAKSLDSILI 105 + P + L G G GK+ L + S + + ++ Sbjct: 131 ASLAVAESPGDTYNPLFLYGGVGLGKTHLMQAIGNYIIKQNPSLKVMYVTSEIFTNELIE 190 Query: 106 D-----------------TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTAR 145 +L++DI + + + FH N++ + +++++ Sbjct: 191 SIKTEKNTSNKNFREKYRNVDVLLIDDIQFIIGKESTQDEFFHTFNTLREAKKQVIISSD 250 Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 P + L SR +V IS P+ + ++ K ID + YI + Sbjct: 251 RPPKDFETLEDRLKSRFTNGLLVDISPPNYETRMAILHKKGEIEGYNIDMDVLEYIATNI 310 Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + ++ E + K+ + I SLA EVL++ Sbjct: 311 KSNIRELEGSLTKLVAFSKFSKKPINVSLAEEVLRD 346 >gi|38232643|ref|NP_938410.1| chromosomal replication initiation protein [Corynebacterium diphtheriae NCTC 13129] gi|61212619|sp|Q6NKL7|DNAA_CORDI RecName: Full=Chromosomal replication initiator protein DnaA gi|38198901|emb|CAE48512.1| chromosomal replication initiator protein [Corynebacterium diphtheriae] Length = 552 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 39/241 (16%), Positives = 88/241 (36%), Gaps = 30/241 (12%) Query: 35 CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS 90 + D +V + A + + P+ + + G SG GK+ L + + ++ Sbjct: 213 NPRYTFDTYVVSDSNKLPWSAAWAVAEK-PARAYNPLFIWGDSGLGKTHLMHAIGNYAQE 271 Query: 91 T----------RFSNIAKSLDSILIDTRKP----------VLLEDIDLLDFND---TQLF 127 ++S+ D ++ ++++DI L + + F Sbjct: 272 LDPKLKVKYVSSEEFTNDYINSVRDDRQEAFKRRYRDLDILMVDDIQFLQGKEGTQEEFF 331 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ Q D +++++ P L +R ++ + I PD + +++ + Sbjct: 332 HTFNALQQADKQIVLSSDRPPKQLTTLEDRLRTRFQSGLIADIYPPDLETRIAILLNKAS 391 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET--QQC 245 I D+ + I R S+ E ++ A I + A E L++ +Q Sbjct: 392 AEGITADRDVLELIASRFNASIRELEGAFIRVSAYASLNEAPINMATAQEALRDMMPEQA 451 Query: 246 D 246 D Sbjct: 452 D 452 >gi|254496740|ref|ZP_05109599.1| chromosomal replication initiator protein DnaA [Legionella drancourtii LLAP12] gi|254354035|gb|EET12711.1| chromosomal replication initiator protein DnaA [Legionella drancourtii LLAP12] Length = 458 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 34/232 (14%), Positives = 85/232 (36%), Gaps = 26/232 (11%) Query: 37 GISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK------ 87 + + ++ + A + P + + G G GK+ L + ++ Sbjct: 126 KFLFESFVEGNSNQLARAASMQVAERPGDAYNPLFIYGGVGLGKTHLMHAIGNEILRNNP 185 Query: 88 -------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDF---NDTQLFHII 130 +++ K+L + I+ + +L++DI + + FH Sbjct: 186 EAKILYLHSERFVADMVKALQTNSINEFKRFYRSLNALLIDDIQFFAGKDRSQEEFFHTF 245 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N++ + +++T+ +P L SR V + P+ + +++ Sbjct: 246 NALLEGQQQIILTSDRYPKEIEGMEERLKSRFGWGLTVAVEPPELETRVAILISKAEQSN 305 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 I + ++A +I +R+ ++ E + ++ A G IT E L++ Sbjct: 306 IELPYEVAFFIAKRIRSNVRELEGALRRVIANAHFTGKPITIEFVHEALRDL 357 >gi|119947308|ref|YP_944988.1| chromosomal replication initiator protein DnaA [Psychromonas ingrahamii 37] gi|166214694|sp|A1T0X4|DNAA_PSYIN RecName: Full=Chromosomal replication initiator protein DnaA gi|119865912|gb|ABM05389.1| chromosomal replication initiator protein DnaA [Psychromonas ingrahamii 37] Length = 458 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 36/233 (15%), Positives = 76/233 (32%), Gaps = 27/233 (11%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDKSRS--- 90 + D+ + + A+ P + L G GK+ L + + + Sbjct: 125 KYTFDNFVEGKSNNFAIATTQQIAENPGDVYNPLFLYAHPGLGKTHLLHAVGNAILAENP 184 Query: 91 -----------------TRFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDTQLFHII 130 N + +L++DI + LF Sbjct: 185 ESKVVYIRSERFVQDMINSIRNNTIEQFKEYYASLDALLIDDIHFFAGKDRSQEVLFQTF 244 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 NS+ +++T+ FP L +R + I P+ + +++ +R Sbjct: 245 NSMLDAHQQVILTSDRFPKEIEGIDERLRTRFGWGLSIPIDPPELETRVAILITKAEERG 304 Query: 191 IFIDKKLAAYIVQRME-RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + +A +I +R+ + E + + A G GIT SL + L++ Sbjct: 305 LKLPDDVAFFIAKRLTITDVRVLEGAIANISAKAQFTGQGITISLVQDALRDM 357 >gi|302870732|ref|YP_003839368.1| chromosomal replication initiator protein DnaA [Caldicellulosiruptor obsidiansis OB47] gi|302573591|gb|ADL41382.1| chromosomal replication initiator protein DnaA [Caldicellulosiruptor obsidiansis OB47] Length = 454 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 41/257 (15%), Positives = 91/257 (35%), Gaps = 36/257 (14%) Query: 15 KQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLI----DSWPSW-PSRVVIL 69 K K D+ QL + + +V + A ++ P + + Sbjct: 99 KSKQDEKLEIVTQL------NPKYTFETFVVGNNNRLAHAAALAVAETPPGERTYNPLFI 152 Query: 70 VGPSGSGKSCLANIWSDK------------------SRSTRFSNIAKSLDSILIDTRKP- 110 G G GK+ L + + + + D + R Sbjct: 153 YGGVGLGKTHLMHAIGHHVLKLYPGTKVMYVTSEIFTNELIAAIRDEKTDEFRLKYRNVD 212 Query: 111 -VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 +L++DI L + + FH N++++ + +++++ P L SR + Sbjct: 213 VLLIDDIQFLGGKERTQEEFFHTFNTLYEANKKIILSSDRPPKEINTLEDRLRSRFEWGL 272 Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA--L 224 + I PD + ++ K + + + +I ++E ++ E ++K+ + + Sbjct: 273 ITDIQPPDFETRIAILSKKCQLEGTPVPQHILEFIASKIETNIRELEGALNKILAYSKLM 332 Query: 225 SRGMGITRSLAAEVLKE 241 + IT LA + LKE Sbjct: 333 APDKEITLELAEKALKE 349 >gi|162147555|ref|YP_001602016.1| chromosomal replication initiator protein dnaA [Gluconacetobacter diazotrophicus PAl 5] gi|161786132|emb|CAP55714.1| putative chromosomal replication initiator protein dnaA [Gluconacetobacter diazotrophicus PAl 5] Length = 487 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 38/242 (15%), Positives = 80/242 (33%), Gaps = 26/242 (10%) Query: 30 FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLANIW- 84 + P + D +V E A PS + L G G GK+ L + Sbjct: 148 LAAPLDPRFTFDTFVVGKPNEFAYACARRVAERPSSPGFNPLFLYGGVGLGKTHLMHAIG 207 Query: 85 SDKSRSTRFSNIAKSLDSILIDTRKPV------------------LLEDIDLL---DFND 123 S+ R S S + + + +++D+ L D Sbjct: 208 SELVRGGAVSVAYMSAEKFMYRFIAAIRSQSTMEFKEQLRSVDVLMIDDLQFLIGKDNTQ 267 Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 + FH N++ ++++A P L +RL V I + ++ Sbjct: 268 EEFFHTFNALVDAGRQIVVSADKSPSDLSGLEDRLRTRLGCGMVADIHATTFELRISILE 327 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 A + + K+ ++ ++ ++ E ++++ A G +T +VL + Sbjct: 328 SKAAASGVAVPAKVLEFLAHKITSNVRELEGALNRLIAHANLFGRPVTLEATQDVLHDIL 387 Query: 244 QC 245 + Sbjct: 388 KA 389 >gi|159045913|ref|YP_001534707.1| chromosomal replication initiation protein [Dinoroseobacter shibae DFL 12] gi|157913673|gb|ABV95106.1| chromosomal replication initiation protein [Dinoroseobacter shibae DFL 12] Length = 460 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 41/244 (16%), Positives = 88/244 (36%), Gaps = 31/244 (12%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANI--WSDK 87 P ++ + +V E A + L G G GK+ L + W + Sbjct: 119 PLDPRLTFSNFVVGKPNELAHASARRVAEGGPVSFNPLFLYGGVGLGKTHLMHAIAWEAQ 178 Query: 88 SRSTRFSNIAKSLDS------------------ILIDTRKPVLLEDIDLLDFNDT---QL 126 +R+ + S + L + ++++D+ + D+ + Sbjct: 179 ARNPGLKVLYLSAEQFMYRFVRALRDRNTMEFKELFRSVDLLMVDDVQFIAGKDSTQDEF 238 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH N++ + ++++A P + SRL VV I D + V+ + Sbjct: 239 FHTFNALVDQNKQIIISADRAPGEIDGLEDRIKSRLSCGLVVDIHPTDYELRLGVLQQRL 298 Query: 187 ADR-----QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 D+ I ++ + + QR+ ++ E ++++ + G IT LA E L + Sbjct: 299 QDQIAAGETIAVEDGVLECLAQRISTNVRVLEGALNRLIAFSDLVGRRITLDLAHEALSD 358 Query: 242 TQQC 245 + Sbjct: 359 LIRA 362 >gi|307728077|ref|YP_003905301.1| chromosomal replication initiator protein DnaA [Burkholderia sp. CCGE1003] gi|307582612|gb|ADN56010.1| chromosomal replication initiator protein DnaA [Burkholderia sp. CCGE1003] Length = 537 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 88/234 (37%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIW-----SD 86 ++ D+ + A + A P + L G G GK+ L + D Sbjct: 203 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLMD 262 Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128 K+ + A+ S ++ + +D +DLL +D + F+ Sbjct: 263 KAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 322 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + +++T+ T+P L SR + V I P+ + ++++ Sbjct: 323 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 382 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + +++ +A ++ + + ++ E + K+ + G IT L E LK+ Sbjct: 383 EFVSLNEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDL 436 >gi|322412915|gb|EFY03822.1| chromosomal replication initiation protein [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 451 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 42/281 (14%), Positives = 92/281 (32%), Gaps = 43/281 (15%) Query: 4 MKEDYSF---FVPDKQKNDQPKNKEEQLFFSFPR-----CLGISRDDLLVHSAIEQAVRL 55 + DY F + D+ + + +Q+ P ++ + AV Sbjct: 74 IAVDYVFEEDLINDQNQTPNSQGYNQQVITPLPAVTSDLNPKYRFENFIQGDENRWAVAA 133 Query: 56 ---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS------------------RSTRFS 94 + + P + + G G GK+ L N + Sbjct: 134 SIAVANTPGTTYNPLFIWGGPGLGKTHLLNAIGNSVLLENPNARIKYITAENFINEFVIH 193 Query: 95 NIAKSLDSILIDTRKP--VLLEDIDLLD-----FNDTQLFHIINSIHQYDSSLLMTARTF 147 ++D + R +L++DI L + F+ N++H + +++T+ Sbjct: 194 IRLDTMDELKEKFRNLDLLLIDDIQSLAKKTLSGTQEEFFNTFNALHNNNKQIVLTSDRT 253 Query: 148 PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER 207 P L +R K V I+ PD + ++ + + Y+ + + Sbjct: 254 PDHLNDLEDRLVTRFKWGLTVNITPPDFETRVAILTNKIQEYNFIFPQDTIEYLAGQFDS 313 Query: 208 SLVFAEKLVDKMDNLALSRGMG----ITRSLAAEVLKETQQ 244 ++ E + + +L IT +AAE ++ +Q Sbjct: 314 NVRDLEGALKDI---SLVANFKQIDTITVDIAAEAIRARKQ 351 >gi|255324008|ref|ZP_05365133.1| chromosomal replication initiator protein DnaA [Corynebacterium tuberculostearicum SK141] gi|255298865|gb|EET78157.1| chromosomal replication initiator protein DnaA [Corynebacterium tuberculostearicum SK141] Length = 545 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 38/255 (14%), Positives = 96/255 (37%), Gaps = 36/255 (14%) Query: 17 KNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE----QAVRLIDSWPSWPSRVVILVGP 72 + + + + + D ++ S+ AV + ++ P+ + + G Sbjct: 192 REAPAHDPNRETSLN----PKHTFDSFVIGSSNRFANGAAVAVAEN-PARAYNPLFIWGG 246 Query: 73 SGSGKSCLANIWSDKSRSTRFSN------------IAKSLDSILIDTRKP---------- 110 SG GK+ L + + + + ++S+ D ++ Sbjct: 247 SGLGKTHLLH--AAGNYAQVLHPGLRVKYVSSEEFTNDYINSLRDDRQESFKRRYRNLDI 304 Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 ++++DI L+ + + FH N++HQ + +++++ P L +R + + Sbjct: 305 LMVDDIQFLEGKESTQEEFFHTFNALHQANKQIILSSDRPPKQLTTLEDRLRTRFEGGLI 364 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 I PD + +++K A+ +D+ + I R E S+ E + ++ + Sbjct: 365 TDIQPPDLETRIAILMKKAANDGTEVDRSVLELIASRFESSIRELEGALIRVSAYSSLVN 424 Query: 228 MGITRSLAAEVLKET 242 I +A L++ Sbjct: 425 EPINVEMAEIALRDL 439 >gi|251781469|ref|YP_002995770.1| chromosomal replication initiation protein [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390097|dbj|BAH80556.1| chromosomal replication initiator protein dnaA [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|323126260|gb|ADX23557.1| chromosomal replication initiation protein [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 451 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 40/268 (14%), Positives = 89/268 (33%), Gaps = 40/268 (14%) Query: 14 DKQKNDQPKNKEEQLFFSFPR-----CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSR 65 D+ + ++ +Q+ P S ++ + AV + + P Sbjct: 87 DQNQIPNSQSYNQQVITPLPAVTSDLNPKYSFENFIQGDENRWAVAASIAVANTPGTTYN 146 Query: 66 VVILVGPSGSGKSCLANIWSDKS------------------RSTRFSNIAKSLDSILIDT 107 + + G G GK+ L N + ++D + Sbjct: 147 PLFIWGGPGLGKTHLLNAIGNSVLLENPNARIKYITAENFINEFVIHIRLDTMDELKEKF 206 Query: 108 RKP--VLLEDIDLLD-----FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 R +L++DI L + F+ N++H + +++T+ P L + Sbjct: 207 RNLDLLLIDDIQSLAKKTLSGTQEEFFNTFNALHNNNKQIVLTSDRTPDHLNDLEDRLVT 266 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 R K V I+ PD + ++ + + Y+ + + ++ E + + Sbjct: 267 RFKWGLTVNITPPDFETRVAILTNKIQEYNFIFPQDTIEYLAGQFDSNVRDLEGALKDI- 325 Query: 221 NLALSRGMG----ITRSLAAEVLKETQQ 244 +L IT +AAE ++ +Q Sbjct: 326 --SLVANFKQIDTITVDVAAEAIRARKQ 351 >gi|229826864|ref|ZP_04452933.1| hypothetical protein GCWU000182_02248 [Abiotrophia defectiva ATCC 49176] gi|229788482|gb|EEP24596.1| hypothetical protein GCWU000182_02248 [Abiotrophia defectiva ATCC 49176] Length = 457 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 45/280 (16%), Positives = 104/280 (37%), Gaps = 42/280 (15%) Query: 6 EDYSFFVPDKQKNDQ---PKNKEEQL---FFSFPRCLGISRDDLLVHSAI----EQAVRL 55 + Y+ K++ D K++ QL S + D +V A+ + Sbjct: 78 KSYNLKFISKEELDSYNTEKSENNQLRERAASANLNPNYTFDTFVVGDNNRLVTAAAISV 137 Query: 56 IDSW-PSWPSRVVILVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDTRK 109 ++ +W + + G G GK+ L + I +++ + ++ + +I+ K Sbjct: 138 AENPGTNW--NPLFIYGGVGLGKTHLMHSIAHYILENQADARVLYVTSEQFTNEVIEAIK 195 Query: 110 -----------------PVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPV 149 +L++DI + + + FH N ++Q +++++ P Sbjct: 196 EGVLASKEFRKKYRNIDALLIDDIQFVIGKERTEEEFFHTFNELYQAGKRIIISSDRPPK 255 Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME--- 206 + + SR + + +I+ PD + ++ K + ++ YI + Sbjct: 256 DFTDIEDRIKSRFGSGMLSEINPPDYETRMAILKKRCELENENLSDEILDYIATNVNSNI 315 Query: 207 RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 R L A K V ++ L ++ T +A LK+ + Sbjct: 316 RELEGAYKKVTALNKL-VNVNTEATLDIAKNALKDIINPN 354 >gi|209542189|ref|YP_002274418.1| chromosomal replication initiator protein DnaA [Gluconacetobacter diazotrophicus PAl 5] gi|209529866|gb|ACI49803.1| chromosomal replication initiator protein DnaA [Gluconacetobacter diazotrophicus PAl 5] Length = 477 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 38/242 (15%), Positives = 80/242 (33%), Gaps = 26/242 (10%) Query: 30 FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLANIW- 84 + P + D +V E A PS + L G G GK+ L + Sbjct: 138 LAAPLDPRFTFDTFVVGKPNEFAYACARRVAERPSSPGFNPLFLYGGVGLGKTHLMHAIG 197 Query: 85 SDKSRSTRFSNIAKSLDSILIDTRKPV------------------LLEDIDLL---DFND 123 S+ R S S + + + +++D+ L D Sbjct: 198 SELVRGGAVSVAYMSAEKFMYRFIAAIRSQSTMEFKEQLRSVDVLMIDDLQFLIGKDNTQ 257 Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 + FH N++ ++++A P L +RL V I + ++ Sbjct: 258 EEFFHTFNALVDAGRQIVVSADKSPSDLSGLEDRLRTRLGCGMVADIHATTFELRISILE 317 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 A + + K+ ++ ++ ++ E ++++ A G +T +VL + Sbjct: 318 SKAAASGVAVPAKVLEFLAHKITSNVRELEGALNRLIAHANLFGRPVTLEATQDVLHDIL 377 Query: 244 QC 245 + Sbjct: 378 KA 379 >gi|62185088|ref|YP_219873.1| chromosomal replication initiation protein [Chlamydophila abortus S26/3] gi|62148155|emb|CAH63912.1| chromosomal replication initiator protein [Chlamydophila abortus S26/3] Length = 460 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 33/238 (13%), Positives = 76/238 (31%), Gaps = 34/238 (14%) Query: 34 RCLGISRDDLLVHSAIEQAVRLI-------DSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 ++ + LV + R++ + +P + L GP GSGK+ L + Sbjct: 104 VNPEMTFANFLVTPENDLPFRILQEFTKPSEDATGFPFNPIYLFGPEGSGKTHLMQAAVN 163 Query: 87 ---KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDF---NDTQ 125 +S + L+ + + +EDI++ + Sbjct: 164 VLRESGGKILYVASDLFTEHLVSAIRSGEMQRFRSFYRNVDALFIEDIEVFSGKGATQEE 223 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 FH NS+ +++++ P L SR + V I + L +++ Sbjct: 224 FFHTFNSLQTEGKLIVISSAYAPADLKAMEERLISRFEWGVAVLIHPLTKEGLRSFLMRQ 283 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 I I+ +++ + ++ + + + L ++L E Sbjct: 284 TEQLSIRIEDSALDFLIHALSSNMKALLHALTLL------SKRVAYKKLTQQLLYEDD 335 >gi|304439078|ref|ZP_07398997.1| DNA-directed DNA replication initiator protein [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372437|gb|EFM26024.1| DNA-directed DNA replication initiator protein [Peptoniphilus duerdenii ATCC BAA-1640] Length = 447 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 36/237 (15%), Positives = 82/237 (34%), Gaps = 30/237 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRLI-------DSWPSWPSRVVILVGPSGSGKSCLANIW--- 84 ++ +V + E A ++ + S + + G G GK+ L Sbjct: 108 NPKYIFENFIVGKSNEFAHAASLAAAESYENPEAAHSNPLFIYGGVGLGKTHLMQAIGHF 167 Query: 85 --------------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---T 124 S++ + +I + + V L++DI + + Sbjct: 168 VLQQDISKKVLYVTSEQFMNELIDSIKNGRNEEFRRKYRSVDLLLIDDIQFIADKESTQE 227 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + FH N++H + +++T+ P L SR VV I PD + ++ Sbjct: 228 EFFHTFNALHGANKQIVLTSDKPPKDIKSLKERLVSRFAWGLVVDIGPPDLETRIAILRA 287 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + + + YI + + ++ E + ++ + IT +A + +K+ Sbjct: 288 KSDSEGFDVPENVINYIAENVRSNIRELEGALTRVKAFSKLTKGVITEDIAKQAIKD 344 >gi|126660126|ref|ZP_01731245.1| chromosomal replication initiation protein [Cyanothece sp. CCY0110] gi|126618569|gb|EAZ89319.1| chromosomal replication initiation protein [Cyanothece sp. CCY0110] Length = 456 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 48/257 (18%), Positives = 82/257 (31%), Gaps = 42/257 (16%) Query: 15 KQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVG 71 K D+ K QL + +V A + P R + L G Sbjct: 103 NNKTDKQSPKLSQL------NPHYNFSRFVVGPTNRMAHAASLAVAESPGREFNPLFLCG 156 Query: 72 PSGSGKSCLANIWSDK-----SRSTRFSNIAKSLDSILI---------------DTRKPV 111 G GK+ L + + F + + LI T + Sbjct: 157 GVGLGKTHLMQAIAHYRLELYPNANVFYVSTEQFTNDLITSIRQDSMEHFREHYRTADIL 216 Query: 112 LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATV 167 L++DI ++ + + FH N++H+ +++ + P L D L SR + Sbjct: 217 LVDDIQFIEGKEYTQEEFFHTFNTLHEAGKQVVIASDRPPKRIP-SLQDRLVSRFSMGLI 275 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---RSLV-FAEKLVDKMDNLA 223 I +PD + ++ K I + + + YI R L + V + Sbjct: 276 ADIQVPDLETRMAILQKKAEYENIVLPRDVIEYIATNYTSNIRELEGALIRAVTYISISG 335 Query: 224 LSRGMGITRSLAAEVLK 240 LS T A VL Sbjct: 336 LSM----TVENIAPVLN 348 >gi|52840257|ref|YP_094056.1| chromosomal replication initiation protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|54292965|ref|YP_125380.1| chromosomal replication initiator protein DnaA [Legionella pneumophila str. Lens] gi|54295984|ref|YP_122353.1| chromosomal replication initiation protein [Legionella pneumophila str. Paris] gi|148358140|ref|YP_001249347.1| chromosomal replication initiator protein DnaA [Legionella pneumophila str. Corby] gi|296105498|ref|YP_003617198.1| chromosomal replication initiator protein DnaA [Legionella pneumophila 2300/99 Alcoy] gi|61212502|sp|Q5X0L8|DNAA_LEGPL RecName: Full=Chromosomal replication initiator protein DnaA gi|61212504|sp|Q5X990|DNAA_LEGPA RecName: Full=Chromosomal replication initiator protein DnaA gi|61212515|sp|Q5ZZK8|DNAA_LEGPH RecName: Full=Chromosomal replication initiator protein DnaA gi|166214678|sp|A5I9F1|DNAA_LEGPC RecName: Full=Chromosomal replication initiator protein DnaA gi|52627368|gb|AAU26109.1| chromosomal replication initiator protein DnaA [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|53749769|emb|CAH11149.1| Chromosomal replication initiator protein DnaA [Legionella pneumophila str. Paris] gi|53752797|emb|CAH14231.1| Chromosomal replication initiator protein DnaA [Legionella pneumophila str. Lens] gi|148279913|gb|ABQ54001.1| chromosomal replication initiator protein DnaA [Legionella pneumophila str. Corby] gi|295647399|gb|ADG23246.1| chromosomal replication initiator protein DnaA [Legionella pneumophila 2300/99 Alcoy] Length = 452 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 84/232 (36%), Gaps = 26/232 (11%) Query: 37 GISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSD------- 86 D + ++ + A + P + + G G GK+ L + + Sbjct: 120 KFVFDSFVEGNSNQLARAASMQVAERPGDAYNPLFIYGGVGLGKTHLMHAIGNSILKNNP 179 Query: 87 ------KSRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDF---NDTQLFHII 130 +++ K+L + I+ + +L++DI + + FH Sbjct: 180 EAKVLYLHSERFVADMVKALQTNSINEFKRFYRSLNALLIDDIQFFAGKDRSQEEFFHTF 239 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N++ + +++T+ +P L SR V + P+ + +++ Sbjct: 240 NALLEGQQQIILTSDRYPKEIEGMEERLKSRFGWGLTVAVEPPELETRVAILISKAEQSN 299 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 I + ++A +I +R+ ++ E + ++ A G IT E L++ Sbjct: 300 IELPYEVAFFIAKRIRSNVRELEGALRRVIANAHFTGKPITIEFVHEALRDL 351 >gi|23097456|ref|NP_690922.1| chromosomal replication initiation protein [Oceanobacillus iheyensis HTE831] gi|38257607|sp|Q8EU88|DNAA_OCEIH RecName: Full=Chromosomal replication initiator protein DnaA gi|22775679|dbj|BAC11957.1| chromosomal replication initiation protein [Oceanobacillus iheyensis HTE831] Length = 447 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 42/267 (15%), Positives = 95/267 (35%), Gaps = 36/267 (13%) Query: 10 FFVPD---KQKNDQPKNKEEQLFFSFPRCLG------ISRDDLLVHSAIEQAVRLIDSWP 60 F +PD + + +P K +Q + D ++ + A + Sbjct: 78 FIIPDSLEEIEEQKPMPKPKQ-STDTGDSPKSMLNSKYTFDTFVIGAGNRFAHAASLAVA 136 Query: 61 SWPSRV---VILVGPSGSGKSCLANIWSDKSR-----STRFSNIAKSLDSILIDTR---- 108 P++ + + G G GK+ L + R + ++ + I+ Sbjct: 137 EAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVRDHNPNAKVVYLTSEKFTNEFINAIMDNK 196 Query: 109 -----------KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 +L++DI + + + FH N++H +++++ P Sbjct: 197 SNHFRNKYRNIDVLLIDDIQFIAGKESTQEEFFHTFNALHGESKQIIISSDRPPKEIPTL 256 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 L SR + + I+ PD + ++ K + I ++ YI ++ ++ E Sbjct: 257 EDRLRSRFEWGLITDITPPDLETRIAILNKKAKAEGLDIPNEVMLYIANQINTNIRELEG 316 Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKE 241 + ++ + I SLAA+ LK+ Sbjct: 317 ALIRVVAYSSLVNQDIDASLAADALKD 343 >gi|170694069|ref|ZP_02885225.1| chromosomal replication initiator protein DnaA [Burkholderia graminis C4D1M] gi|170141141|gb|EDT09313.1| chromosomal replication initiator protein DnaA [Burkholderia graminis C4D1M] Length = 542 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 88/234 (37%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIW-----SD 86 ++ D+ + A + A P + L G G GK+ L + D Sbjct: 208 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLMD 267 Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128 K+ + A+ S ++ + +D +DLL +D + F+ Sbjct: 268 KAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 327 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + +++T+ T+P L SR + V I P+ + ++++ Sbjct: 328 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 387 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + +++ +A ++ + + ++ E + K+ + G IT L E LK+ Sbjct: 388 EFVSLNEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDL 441 >gi|78187975|ref|YP_376018.1| chromosomal replication initiation protein [Chlorobium luteolum DSM 273] gi|78167877|gb|ABB24975.1| chromosomal replication initiator protein DnaA [Chlorobium luteolum DSM 273] Length = 489 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 40/256 (15%), Positives = 83/256 (32%), Gaps = 32/256 (12%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVIL 69 K ++ E F + D L+ A S P +++ Sbjct: 133 GKADRAFERDVER---FETHLNSKYTFDTLIRGDCNSLAFAAAKSVAQNPGQNAFNPLVI 189 Query: 70 VGPSGSGKSCLANIW-------SDKSRSTRFSNIAKSLDSILIDTRK------------- 109 G G GK+ + D S+ S+ ++D + Sbjct: 190 YGGVGLGKTHIMQAIGNTVRESRDASKVLYVSSEKFAIDFVNAIQNGKIQEFSSFYRNID 249 Query: 110 PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 ++++DI + ++FHI N++HQ + ++++A L SR Sbjct: 250 VLIIDDIQFFSGKEKTQEEIFHIFNTLHQSNKQIILSADRPIKDIKGIEDRLISRFNWGL 309 Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK-LVDKMDNLALS 225 I PD + + +I+ + D+ + +I + ++ E +V + +L Sbjct: 310 SADIQPPDYETRKAIILSKLHQSGVNFDENVIEFIANNVTDNVRELEGCIVKLLAAQSLD 369 Query: 226 RGMGITRSLAAEVLKE 241 I LK+ Sbjct: 370 -KREIDLQFTKSTLKD 384 >gi|326329129|ref|ZP_08195457.1| putative replication initiator protein [Nocardioidaceae bacterium Broad-1] gi|325953016|gb|EGD45028.1| putative replication initiator protein [Nocardioidaceae bacterium Broad-1] Length = 575 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 37/240 (15%), Positives = 87/240 (36%), Gaps = 26/240 (10%) Query: 29 FFSFPRCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 + + ++ S+ A + P +++ G SG GK+ L + Sbjct: 229 VLETRLNPKYTFETFVIGSSNRFPHAAAVAVSEAPGKAYNPLLVYGESGLGKTHLLHAIG 288 Query: 86 DKSRS------TRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDF---N 122 RS R+ + + + + R +L++DI L+ Sbjct: 289 HYVRSLYSGAKVRYVSSEEFTNEFINAIRDDRQDRFKRRYRDVDVLLIDDIQFLEGKTQT 348 Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 + FH N++H + +++T+ P L +R + + + PD + ++ Sbjct: 349 QEEFFHTFNTLHNANKQIVLTSDRPPKRLEALEDRLRNRFEWGLITDVQPPDIETRIAIL 408 Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 K A ++ + +I +++ ++ E + ++ A + +LA VLK+ Sbjct: 409 RKKAAMERLTAPPDVLEFIASKIQTNIRELEGALIRVTAFANLNRQDVDLTLAEIVLKDL 468 >gi|148552930|ref|YP_001260512.1| chromosomal replication initiation protein [Sphingomonas wittichii RW1] gi|148498120|gb|ABQ66374.1| chromosomal replication initiator protein DnaA [Sphingomonas wittichii RW1] Length = 477 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 32/241 (13%), Positives = 82/241 (34%), Gaps = 27/241 (11%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSR 89 P + D +V A E A + + L G +G GK+ L + + Sbjct: 140 PLEARYTFDSYVVGKANEVAYNAARTLAEGGKLVFNPLFLHGGTGLGKTHLMHAIGHEYL 199 Query: 90 STRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFND---TQL 126 + + + + + ++++D+ + + + Sbjct: 200 ARQPGAKVVYMSAEKFMFEFVSAMRAKDTFSFKQRLRAADVLMIDDVQFIAGKESTQEEF 259 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF-LEKVIVKM 185 FH +N + L+++A P + SRL V ++ D + L ++ K+ Sbjct: 260 FHTMNELISAGRRLVISADRSPQDLDGIESRILSRLSWGLVADVNPADFELRLNILMRKL 319 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 Q + + + ++ +R+ ++ E ++++ A G + L + + Sbjct: 320 QGMPQAQVPQDVVMFLARRISANVRELEGALNRVVAYAALSGKPVDIDFTQATLADILRA 379 Query: 246 D 246 + Sbjct: 380 N 380 >gi|116332682|ref|YP_794209.1| DNA replication ATPase initiation [Lactobacillus brevis ATCC 367] gi|122270622|sp|Q03UE4|DNAA_LACBA RecName: Full=Chromosomal replication initiator protein DnaA gi|116098029|gb|ABJ63178.1| DNA replication ATPase initiation [Lactobacillus brevis ATCC 367] Length = 452 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 77/235 (32%), Gaps = 28/235 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91 + D ++ + A + P + G G GK+ L + +K Sbjct: 117 NSRYTFDTFVIGKGNQMAHAAALVVSEEPGVMYNPLFFYGGVGLGKTHLMHAIGNKMLED 176 Query: 92 R-----------------FSNIAKSLDSILIDTRK---PVLLEDIDLLD---FNDTQLFH 128 R + I + +L++DI + FH Sbjct: 177 RPDTKVKYVTSEAFTNDFINAIQTRTQEQFRQEYRNVDLLLVDDIQFFANKEGTQEEFFH 236 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 N+++ +++T+ P L D L SR V I+ PD + ++ Sbjct: 237 TFNALYDDGKQIVLTSDRLPNEIP-KLQDRLVSRFAWGLSVDITPPDLETRIAILRNKAD 295 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 QI I +YI +++ ++ E + ++ + I LAAE LK Sbjct: 296 ADQIDIPDDTLSYIAGQIDSNVRELEGALARVQAYSQLMHQPIATDLAAEALKSL 350 >gi|307565813|ref|ZP_07628274.1| chromosomal replication initiator protein DnaA [Prevotella amnii CRIS 21A-A] gi|307345437|gb|EFN90813.1| chromosomal replication initiator protein DnaA [Prevotella amnii CRIS 21A-A] Length = 467 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 34/236 (14%), Positives = 83/236 (35%), Gaps = 29/236 (12%) Query: 39 SRDDLLVHSAIEQAV----RLIDSWPSWPSRVVILVGPSGSGKSCL-------------- 80 S ++ + + + + + + + + GPSG GK+ L Sbjct: 135 SFNNYVEGDSNKMPLTIGLAIAEHPNKNQFNPLFVYGPSGCGKTHLINAIGLKIKKLYPQ 194 Query: 81 -------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID---LLDFNDTQLFHII 130 A ++ + ++ +N T +L++DI FHI Sbjct: 195 KRVLYVSARLFQVQYTNSVRTNTTNDF-IHFYQTIDILLVDDIQEWMTATKTQDTFFHIF 253 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N + + +++ + PV L +R KA + ++ P+ ++ Sbjct: 254 NHLSRNGKRIILASDRPPVDLRGMNDRLLTRFKAGLITELEKPNIQLCIDILHNKIKRDG 313 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + I + + +I Q S+ + +++ + ++ + +LA V+K + D Sbjct: 314 LIIPEDVIQFIAQTANGSVRDLQGVINSLLAYSVVYNSAVDMNLAERVIKRAVKID 369 >gi|91774357|ref|YP_544113.1| chromosomal replication initiator protein DnaA [Methylobacillus flagellatus KT] gi|123380248|sp|Q1GXK1|DNAA_METFK RecName: Full=Chromosomal replication initiator protein DnaA gi|91708344|gb|ABE48272.1| chromosomal replication initiator protein DnaA [Methylobacillus flagellatus KT] Length = 470 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 45/265 (16%), Positives = 97/265 (36%), Gaps = 27/265 (10%) Query: 4 MKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP 63 + + P K + PK K + L + D+ + A + A P Sbjct: 106 ISKVTKTVSPAKPASAAPK-KPKTLTETSGLNPAFRFDNFVTGKANQLARAAAIQVAENP 164 Query: 64 S---RVVILVGPSGSGKSCLANIWSD-------------KSRSTRFSNIAKSLDSILID- 106 + + G G GK+ + + S++ K+ + D Sbjct: 165 GTAYNPLFIYGGVGLGKTHVLQAIGNHLKSQRPDAKIRYLHAERYVSDVVKAYEHKAFDE 224 Query: 107 ------TRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 + +L++DI + F+ NS+ + +++T T+P Sbjct: 225 FKRQYHSLDLLLIDDIQFFAKKSRTQEEFFYAFNSLIEAKKQIIITCDTYPKEIADVDER 284 Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 L +R V + P+ + +++K ++ +D+ +A +I +++ S+ E ++ Sbjct: 285 LRTRFSWGLTVAVEPPELEMRVAILLKKAEAARVTLDEDVAFFIAKQVRSSVRELEGALN 344 Query: 218 KMDNLALSRGMGITRSLAAEVLKET 242 ++ +A G I SLA E LK+ Sbjct: 345 RIIAMANFTGHAIDVSLAKEALKDL 369 >gi|225025478|ref|ZP_03714670.1| hypothetical protein EIKCOROL_02378 [Eikenella corrodens ATCC 23834] gi|224941762|gb|EEG22971.1| hypothetical protein EIKCOROL_02378 [Eikenella corrodens ATCC 23834] Length = 510 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 38/252 (15%), Positives = 83/252 (32%), Gaps = 30/252 (11%) Query: 16 QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGP 72 ++ ++ + + Q + D L+ AV S P L G Sbjct: 161 KREERQQQRYAQTNL----SPEYTFDTLVEGKGNRLAVAAARSIAENPGKNYNPFFLYGS 216 Query: 73 SGSGKSCLANI-----------------WSDKSRSTRFSNIAKSLDSILIDTRKP---VL 112 +G GK+ LA ++ KP ++ Sbjct: 217 TGLGKTHLAQAVGNELLRLKPEAKVYYMHAEDFVRGMIQAFRNHAHDAFRQQYKPYDFLI 276 Query: 113 LEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 ++DI + D + FH+ N H + +++T P L SR ++ Sbjct: 277 IDDIQFIKGKDRSMEEFFHLYNHCHHHKKQIILTCDVLPTKIDDMDDRLKSRFSWGLTLE 336 Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229 + P+ + +++ K + + ++ A +I + ++ E +++ + Sbjct: 337 LEPPELEMRVEILQKKADSVGVELKEEAAFFIATHIRSNVRELEGAFKRVEARSRFEHKP 396 Query: 230 ITRSLAAEVLKE 241 I LA E L++ Sbjct: 397 IDVELATEALQD 408 >gi|304405889|ref|ZP_07387547.1| chromosomal replication initiator protein DnaA [Paenibacillus curdlanolyticus YK9] gi|304345132|gb|EFM10968.1| chromosomal replication initiator protein DnaA [Paenibacillus curdlanolyticus YK9] Length = 448 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 46/269 (17%), Positives = 97/269 (36%), Gaps = 34/269 (12%) Query: 7 DYSFFVPDKQ--KNDQPKNKEEQLFF----SFPR--CLGISRDDLLVHSAIEQAVRLIDS 58 D F + + + + QP Q+ F + D ++ + A + Sbjct: 75 DVKFIIEENRAPEPAQPLPVAVQVPVASDEPFTHLLNPKYTFDTFVIGANNRFAHAASLA 134 Query: 59 WPSWPSRV---VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAK 98 P++ + L G G GK+ L + S+K + + I Sbjct: 135 VAEAPAKAYNPLFLYGGVGLGKTHLMHAIGHYILDHNPSTKVMYISSEKFTNEFINAIRD 194 Query: 99 SLDSILIDTRKPV---LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 + + + + L++DI L D + FH N++H+ +++++ P Sbjct: 195 NRGESFRNKYRNIDVLLIDDIQFLAGKDGTQEEFFHTFNALHEERKQIIISSDRTPKEIP 254 Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 L SR + + I PD + ++ K + I + YI +++ ++ Sbjct: 255 TLEERLRSRFEWGLITDIQAPDLETRIAILRKKAKAENLEIPNEAMVYIANQIDTNIREL 314 Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKE 241 E + ++ + I+ LAAE LK+ Sbjct: 315 EGALIRVVAYSSLINEDISSHLAAEALKD 343 >gi|311741699|ref|ZP_07715521.1| exopolyphosphatase [Corynebacterium pseudogenitalium ATCC 33035] gi|311303220|gb|EFQ79301.1| exopolyphosphatase [Corynebacterium pseudogenitalium ATCC 33035] Length = 545 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 38/255 (14%), Positives = 96/255 (37%), Gaps = 36/255 (14%) Query: 17 KNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE----QAVRLIDSWPSWPSRVVILVGP 72 + + + + + D ++ S+ AV + ++ P+ + + G Sbjct: 192 REAPAHDPNRETSLN----PKHTFDSFVIGSSNRFANGAAVAVAEN-PARAYNPLFIWGG 246 Query: 73 SGSGKSCLANIWSDKSRSTRFSN------------IAKSLDSILIDTRKP---------- 110 SG GK+ L + + + + ++S+ D ++ Sbjct: 247 SGLGKTHLLH--AAGNYAQVLHPGLRVKYVSSEEFTNDYINSLRDDRQESFKRRYRNLDI 304 Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 ++++DI L+ + + FH N++HQ + +++++ P L +R + + Sbjct: 305 LMVDDIQFLEGKESTQEEFFHTFNALHQANKQIILSSDRPPKQLTTLEDRLRTRFEGGLI 364 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 I PD + +++K A+ +D+ + I R E S+ E + ++ + Sbjct: 365 TDIQPPDLETRIAILMKKAANDGTEVDRSVLELIASRFESSIRELEGALIRVSAYSSLVN 424 Query: 228 MGITRSLAAEVLKET 242 I +A L++ Sbjct: 425 EPINVEMAEIALRDL 439 >gi|319940693|ref|ZP_08015035.1| chromosomal replication initiator protein dnaA [Sutterella wadsworthensis 3_1_45B] gi|319805844|gb|EFW02611.1| chromosomal replication initiator protein dnaA [Sutterella wadsworthensis 3_1_45B] Length = 454 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 43/244 (17%), Positives = 89/244 (36%), Gaps = 35/244 (14%) Query: 36 LGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWS------- 85 G++ ++ + +A + AV + + + + G G GK+ L Sbjct: 112 PGLTFENYVNGNANQLAVAAAEHVATTTGTQYNPLYIYGGVGLGKTHLMQAIGHRYLDLH 171 Query: 86 --DKSRSTRFSNIAKSLDSILIDTRK-----------------PVLLEDIDLLDF---ND 123 + R + S + ++ +L++D+ L + Sbjct: 172 PKARVRCVSAQDFINEYTSAVRESTNKTHASLEKFDERYRSLDLLLIDDVQSLSGAKGSQ 231 Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 Q F ++ ++ L++T+ T+ P L SRL V I P+ + +++ Sbjct: 232 GQFFRAFEALVPHNKQLVITSDTYTRGLKDIEPRLISRLSQGLSVAIEPPEFEMRTAILL 291 Query: 184 KMFADRQIFIDKKLAAYIVQRME---RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + ++AAYI +R++ R L A + V + IT +A VL+ Sbjct: 292 NKAKTMGVDLPDEVAAYIAKRLKSNVRELEGALQQVVAYQQFQATSSREITIDIAKRVLR 351 Query: 241 ETQQ 244 E Q Sbjct: 352 EQFQ 355 >gi|218297059|ref|ZP_03497736.1| chromosomal replication initiator protein DnaA [Thermus aquaticus Y51MC23] gi|218242614|gb|EED09151.1| chromosomal replication initiator protein DnaA [Thermus aquaticus Y51MC23] Length = 441 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 35/237 (14%), Positives = 85/237 (35%), Gaps = 26/237 (10%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSR-- 89 + ++ +V A + P + + + G G GK+ L + Sbjct: 108 NPKYTFENFVVGPNNNLAHAAAVAVAESPGKAYNPLFIYGGVGLGKTHLMHAVGHSVAKR 167 Query: 90 ---------------STRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128 + + I + + + + V L++DI + + + FH Sbjct: 168 FPSLKIEYVSTETFTNELINAIREDRMAEFRERYRSVDLLLVDDIQFIAGKERTQEEFFH 227 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++ + +++++ P L SR + + I PD + ++ Sbjct: 228 TFNALFEAHKQIILSSDRPPKDILTLEARLRSRFEWGLITDIQPPDLETRIAILKMNAEQ 287 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 R + I + + YI +++ ++ E + ++ A G+ +TR +AA+ L + Sbjct: 288 RGLRIGEDVLEYIARQVTSNIRELEGALMRVVAYASLNGVELTRQVAAKALSDIFAP 344 >gi|152994044|ref|YP_001338879.1| chromosomal replication initiator protein DnaA [Marinomonas sp. MWYL1] gi|189044598|sp|A6VR65|DNAA_MARMS RecName: Full=Chromosomal replication initiator protein DnaA gi|150834968|gb|ABR68944.1| chromosomal replication initiator protein DnaA [Marinomonas sp. MWYL1] Length = 516 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 36/236 (15%), Positives = 80/236 (33%), Gaps = 30/236 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW------- 84 + D+ + + + A + P + + G G GK+ L Sbjct: 182 NNSFTFDNFIEGKSNQLAHAAALQVAENPGGAYNPLFIYGGVGLGKTHLMQAVGTEMMRH 241 Query: 85 ---------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQL 126 +D ++ + + I + +L++DI D + Sbjct: 242 NPNAKVVYLHSERFVADMVKALQLNAINDFKR--YYRSVDALLIDDIQFFAGKDRTQEEF 299 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH N++ + +++T +P L SR V I P+ + ++++ Sbjct: 300 FHTFNALLEGGQQMILTCDRYPKEIQGLEDRLKSRFGWGLTVAIEPPELETRVAILMRKA 359 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + A +I Q++ ++ E + ++ + G IT E LK+ Sbjct: 360 DESGIKLSYDSAFFIAQKIRSNVRELEGALKRVIANSHFTGRAITPDFVRESLKDL 415 >gi|88798539|ref|ZP_01114123.1| chromosomal replication initiation protein [Reinekea sp. MED297] gi|88778639|gb|EAR09830.1| chromosomal replication initiation protein [Reinekea sp. MED297] Length = 495 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 36/234 (15%), Positives = 82/234 (35%), Gaps = 30/234 (12%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPS---WPSRVVILVGPSGSGKSCLANIW--------- 84 + + + + A+ + + G G GK+ L Sbjct: 163 AFTFQSFVEGKSNQLALAASQQVAENAGGAYNPLFIYGGVGLGKTHLMQAIGNEIIANNP 222 Query: 85 -------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDTQLFH 128 +D ++ + + +A+ + +L++DI + + FH Sbjct: 223 TAKVVYLHSERFVADMVKALQLNAMAEFKR--FYRSLDALLIDDIQFFAKKDRSQEEFFH 280 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++ + + +++T FP L SR V + PD + +++K Sbjct: 281 TFNALLEGNQQVILTCDRFPKEIDGLEDRLKSRFGWGLTVAVEPPDLETRVAILMKKAEQ 340 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ + + A +I QR+ ++ E + ++ A G I +L E LK+ Sbjct: 341 AKVKLPAESAFFIAQRIRSNVRELEGALKRVIANAQFIGAPIDTALVKEALKDL 394 >gi|258544743|ref|ZP_05704977.1| ATPase involved in DNA replication initiation [Cardiobacterium hominis ATCC 15826] gi|258520014|gb|EEV88873.1| ATPase involved in DNA replication initiation [Cardiobacterium hominis ATCC 15826] Length = 444 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 41/258 (15%), Positives = 86/258 (33%), Gaps = 34/258 (13%) Query: 16 QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW----PSRVVILVG 71 Q+N P F + + + +A + S +++ G Sbjct: 95 QRNAAPA------PFESNLNSDYQFHNFVAAPSNNEAFAAAERVSGGHFFADSNPLLIYG 148 Query: 72 PSGSGKSCLANIWSDKSR-----STRFSNIAKSLDSILIDTRK--------------PVL 112 +G GKS L + + R + + N + ++ L +L Sbjct: 149 GTGLGKSHLMHAAGNALRRNGRTAVMYMNAEQYVNEFLAALAGKTQKAFSNRLRSVDALL 208 Query: 113 LEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 ++D+ L + + FH N + ++MT +P L SR A V Sbjct: 209 IDDVQFLGGKTQSQAEFFHTFNELIDKKRQIIMTCDRYPKEIEGLEARLKSRFGAGLTVS 268 Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM--DNLALSRG 227 I P+ + ++ ++ + +A +I + +E ++ E + K+ L + Sbjct: 269 IRAPEPETRFAILKSKAKEQNFPLPDDVAYFIAENIESNVRDLEGALKKVIFQCQVLKKN 328 Query: 228 MGITRSLAAEVLKETQQC 245 T +A L + Q Sbjct: 329 EPATVPIAQAALADLLQA 346 >gi|168334923|ref|ZP_02693043.1| DnaA [Epulopiscium sp. 'N.t. morphotype B'] Length = 445 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 37/244 (15%), Positives = 90/244 (36%), Gaps = 28/244 (11%) Query: 27 QLFFSFPRC--LGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLA 81 Q + P + + +V ++ A + P+ + L G G GK+ L Sbjct: 98 QDPLNAPSNLNPKYTFNSFVVGNSNRMAHAATMAVAKMPAKSYNPLFLYGGVGLGKTHLM 157 Query: 82 NIWS-----------------DKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDF 121 + +K + ++I ++ + + + L++DI + Sbjct: 158 QSIAHFTLKHHPNLKVLYTSTEKFTNELINSIRDDQNNAFRNKYRNIDILLIDDIQFIAG 217 Query: 122 ND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178 + + FH N++++ + +++++ P L SR + + + PD + Sbjct: 218 KERTQEEFFHTFNTLYEANKQIIISSDRTPKEIEFLESRLRSRFEWGLIADLQPPDLETR 277 Query: 179 EKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238 ++ K I ID + +I + + ++ E ++++ + I L E Sbjct: 278 IAILKKKAEMENITIDSNVLQFIAETIISNIRELEGALNRIIAFSSLSNETINLELTEEA 337 Query: 239 LKET 242 LK+T Sbjct: 338 LKDT 341 >gi|156740029|ref|YP_001430158.1| chromosomal replication initiation protein [Roseiflexus castenholzii DSM 13941] gi|189044602|sp|A7NFB8|DNAA_ROSCS RecName: Full=Chromosomal replication initiator protein DnaA gi|156231357|gb|ABU56140.1| chromosomal replication initiator protein DnaA [Roseiflexus castenholzii DSM 13941] Length = 480 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 86/234 (36%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD----- 86 + D ++ + A + P++ + L G G GK+ L + + Sbjct: 142 NPRYTFDRFIIGPSNRLANAACMAVAEHPAQAYNPLFLYGGVGLGKTHLLHAIGNFVLDR 201 Query: 87 --KSRSTRFSNIAKSLDSILIDTR-------------KPVLLEDIDLLDFND---TQLFH 128 + S+ + D I R +L++DI + + + FH Sbjct: 202 DPEVNVLYVSSETFTNDLINSIRRQQTEEFRIRYRNIDILLIDDIQFIAGKEQTQEEFFH 261 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H +++++ P + L SR + +V + +PD + ++ Sbjct: 262 TFNTLHSAGKQIIISSDRSPKAILTLEERLRSRFEWGLIVDVQMPDLETRTAILRAKAEQ 321 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + + ++ QR++ + E ++++ A + +T +A L E Sbjct: 322 SPVPVPQPVIDFLAQRIQSHIRELEGCLNRVTAYAQMYNIPVTIEVATAALSEL 375 >gi|119355858|ref|YP_910502.1| chromosomal replication initiation protein [Chlorobium phaeobacteroides DSM 266] gi|119353207|gb|ABL64078.1| chromosomal replication initiator protein DnaA [Chlorobium phaeobacteroides DSM 266] Length = 490 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 35/235 (14%), Positives = 77/235 (32%), Gaps = 29/235 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLANIWSDKSRS 90 + L+ A S P +++ G G GK+ + + R Sbjct: 152 NPKYVFETLIRGDCNSLAFAASKSVAQNPGLNAFNPLVIYGGVGLGKTHMMQAIGNSVRK 211 Query: 91 TRFSN--IAKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLF 127 S + S + +D + +++DI + ++F Sbjct: 212 NCLSEKVLYVSSEKFAVDFVNAIQNGKIQEFSSFYRNIDVLIIDDIQFFAGKEKTQEEIF 271 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 HI N++HQ + +++++ L SR I PD + + +I+ Sbjct: 272 HIFNTLHQTNKQIILSSDRPIKDIKGIEDRLISRFNWGLSADIQPPDYETRKAIILSKLE 331 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEK-LVDKMDNLALSRGMGITRSLAAEVLKE 241 + +D+ + +I + ++ E +V + +L I LK+ Sbjct: 332 QSGVNLDESVIEFIATNVTENVRELEGCIVKLLAAQSLDN-REIDLHFTKSTLKD 385 >gi|332523224|ref|ZP_08399476.1| chromosomal replication initiator protein DnaA [Streptococcus porcinus str. Jelinkova 176] gi|332314488|gb|EGJ27473.1| chromosomal replication initiator protein DnaA [Streptococcus porcinus str. Jelinkova 176] Length = 451 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 42/278 (15%), Positives = 91/278 (32%), Gaps = 37/278 (13%) Query: 4 MKEDYSF-----FVPDKQKNDQPKNKEEQLFFSF---PRCLGISRDDLLVHSAIEQAVRL 55 + DY F + Q+ Q + + S ++ + AV Sbjct: 74 IAVDYQFEDDLEIMSGAQETSQTFSTQNSNPLPLVKSDLNPKYSFENFIQGDENRWAVAA 133 Query: 56 ---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS------------------RSTRFS 94 + + P + + G G GK+ L N + Sbjct: 134 SIAVANTPGTTYNPLFIWGGPGLGKTHLLNAIGNSVLLDNPNARVKYITAENFINEFVIH 193 Query: 95 NIAKSLDSILIDTRKP--VLLEDIDLLD-----FNDTQLFHIINSIHQYDSSLLMTARTF 147 ++D + R +L++DI L + F+ N++H + +++T+ Sbjct: 194 IRLDTMDELKEKFRNLDLLLIDDIQSLAKKTLLGTQEEFFNTFNALHNNNKQIVLTSDRT 253 Query: 148 PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER 207 P L +R K V I+ PD + ++ + + Y+ + + Sbjct: 254 PDHLNDLEQRLVTRFKWGLTVNITPPDFETRVAILTNKIQEYSFTFPQDTIEYLAGQFDS 313 Query: 208 SLVFAEKLVDKMDNLA-LSRGMGITRSLAAEVLKETQQ 244 ++ E + + +A + IT +AAE ++ +Q Sbjct: 314 NVRDLEGALKDISLVANFKQIDKITVDIAAEAIRARKQ 351 >gi|302205158|gb|ADL09500.1| Chromosomal replication initiation protein [Corynebacterium pseudotuberculosis C231] gi|308275398|gb|ADO25297.1| Chromosomal replication initiation protein [Corynebacterium pseudotuberculosis I19] Length = 603 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 43/266 (16%), Positives = 101/266 (37%), Gaps = 38/266 (14%) Query: 14 DKQKNDQPKNKEEQLFFS----FPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSR 65 ++ + P+ + EQ F+ + D +V + A+ + + P+ Sbjct: 235 EQIPSGTPRTR-EQPSFNPDRALALNPHYTFDSYVVSDSNKLPCSAAIAVAEK-PARAYN 292 Query: 66 VVILVGPSGSGKSCLANI----WSDKSRSTRFSNIA------KSLDSILIDTRKP----- 110 + + G SG GK+ L + + R ++ + ++S+ D ++ Sbjct: 293 PLFIWGDSGLGKTHLMHAVGNYAQYLNPRLRIKYVSSEEFTNEYINSVRDDRQEAFKRKY 352 Query: 111 -----VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 ++++DI L + + FH N+++Q + +++++ P L +R Sbjct: 353 RELDILMVDDIQFLQGKEGTQEEFFHTFNALYQANKQIVLSSDRPPKQLTTLEDRLRTRF 412 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN- 221 +A + I PD + +++K A I D++ I R S+ E ++ Sbjct: 413 QAGLIADIYPPDLETRIAILMKKAASESIVADREAIELIASRFNTSIRELEGAFIRVSAY 472 Query: 222 LALSR----GMGITRSLAAEVLKETQ 243 +L I +A + L++ Sbjct: 473 ASLMSPDKGKHRIDLRIAEKALEDMM 498 >gi|15612564|ref|NP_240867.1| chromosomal replication initiation protein [Bacillus halodurans C-125] gi|14194694|sp|Q9RCA2|DNAA_BACHD RecName: Full=Chromosomal replication initiator protein DnaA gi|5672647|dbj|BAA82685.1| 78%-identity [Bacillus halodurans] gi|10172613|dbj|BAB03720.1| initiation of chromosome replication [Bacillus halodurans C-125] Length = 449 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 86/235 (36%), Gaps = 34/235 (14%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWS-----DKS 88 + D ++ S A + P++ + + G G GK+ L + Sbjct: 116 KYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVMDHNP 175 Query: 89 RSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHII 130 + ++ + I+ + +L++DI L + + FH Sbjct: 176 NAKVVYLSSEKFTNEFINAIRDNKAVNFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFHTF 235 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N++H+ + +++++ P L SR + + I+ PD + ++ K Sbjct: 236 NALHEDNKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKAEN 295 Query: 191 IFIDKKLAAYIVQRME---RSLV-FAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I ++ YI +++ R L ++V +L + LAAE LK+ Sbjct: 296 LDIPNEVMLYIANQIDTNIRELEGALIRVVA---YSSLINQ-DMNADLAAEALKD 346 >gi|260665210|ref|ZP_05866059.1| chromosomal replication initiator protein DnaA [Lactobacillus jensenii SJ-7A-US] gi|260560947|gb|EEX26922.1| chromosomal replication initiator protein DnaA [Lactobacillus jensenii SJ-7A-US] Length = 455 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 38/238 (15%), Positives = 75/238 (31%), Gaps = 26/238 (10%) Query: 31 SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDK 87 + + D + + A + P + + G G GK+ L + Sbjct: 116 NLQLNEKYTFDTFVQGEGNKLAEGAALAVADNPGSFYNPLFIFGGVGLGKTHLMQAIGHQ 175 Query: 88 SRSTRFSNIAKSLDSILI--------------------DTRKPVLLEDIDLLDFND---T 124 R + + S T +L++DI + Sbjct: 176 MLGERPNAKVVYIQSETFVNDFINSIKNKTQDEFREKYRTADLLLVDDIQFFAKKEGIQE 235 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + FH +++ ++MT+ P L SR V+I+ PD + ++ K Sbjct: 236 EFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFAWGLQVEITPPDLETRIAILRK 295 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + ID YI ++ ++ E + K+ A I +LA + L + Sbjct: 296 KAESEGLVIDDATLDYIASQVSTNIRELEGALVKVQAHATIEKADINVNLARDALTDL 353 >gi|238855506|ref|ZP_04645811.1| chromosomal replication initiator protein DnaA [Lactobacillus jensenii 269-3] gi|282931532|ref|ZP_06337031.1| chromosomal replication initiator protein DnaA [Lactobacillus jensenii 208-1] gi|238831872|gb|EEQ24204.1| chromosomal replication initiator protein DnaA [Lactobacillus jensenii 269-3] gi|281304339|gb|EFA96442.1| chromosomal replication initiator protein DnaA [Lactobacillus jensenii 208-1] Length = 455 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 38/238 (15%), Positives = 75/238 (31%), Gaps = 26/238 (10%) Query: 31 SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDK 87 + + D + + A + P + + G G GK+ L + Sbjct: 116 NLQLNEKYTFDTFVQGEGNKLAEGAALAVADNPGSFYNPLFIFGGVGLGKTHLMQAIGHQ 175 Query: 88 SRSTRFSNIAKSLDSILI--------------------DTRKPVLLEDIDLLDFND---T 124 R + + S T +L++DI + Sbjct: 176 MLGERPNAKVVYIQSETFVNDFINSIKNKTQDEFREKYRTADLLLVDDIQFFAKKEGIQE 235 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + FH +++ ++MT+ P L SR V+I+ PD + ++ K Sbjct: 236 EFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFAWGLQVEITPPDLETRIAILRK 295 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + ID YI ++ ++ E + K+ A I +LA + L + Sbjct: 296 KAESEGLVIDDATLDYIASQVSTNIRELEGALVKVQAHATIEKADINVNLARDALTDL 353 >gi|314917480|gb|EFS81311.1| replication initiator protein DnaA [Propionibacterium acnes HL050PA1] Length = 474 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 41/234 (17%), Positives = 91/234 (38%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN--------- 82 + D ++ ++ A + P + +++ G SG GK+ L + Sbjct: 138 NPKYTFDSFVIGASNRFAHAAAVAVAEAPGKSYNPLLIYGGSGVGKTPLLHGIGRYVMSY 197 Query: 83 --------IWSDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDF---NDTQLFH 128 + +++ + + I + + + + V L++DI L + FH Sbjct: 198 YDNVKVKYVSTEELTNDFINAIGTNRTTEFRRSYRDVDVLLVDDIQFLQSKIQTQEEFFH 257 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H ++MT+ P P L SR + + I PD + ++ + A Sbjct: 258 TFNTLHNAQKQIVMTSDRPPKLLEALEPRLRSRFEWGLLTDIQPPDLETRIAILRRKVAA 317 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +I ++ + +I R++ ++ E + ++ A + SLA VLK+ Sbjct: 318 EKITVEPDVLEFIASRIQTNIRELEGALIRVTAFASLNQQPVDISLAEVVLKDL 371 >gi|312877904|ref|ZP_07737849.1| chromosomal replication initiator protein DnaA [Caldicellulosiruptor lactoaceticus 6A] gi|311795330|gb|EFR11714.1| chromosomal replication initiator protein DnaA [Caldicellulosiruptor lactoaceticus 6A] Length = 454 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 36/237 (15%), Positives = 85/237 (35%), Gaps = 30/237 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRLI----DSWPSW-PSRVVILVGPSGSGKSCLANIWSDK-- 87 + + +V + A ++ P + + G G GK+ L + Sbjct: 113 NPKYTFETFVVGNNNRLAHAAALAVAETPPGERTYNPLFIYGGVGLGKTHLMHAIGHHVL 172 Query: 88 ----------------SRSTRFSNIAKSLDSILIDTRKP--VLLEDIDLLDFND---TQL 126 + + + D + R +L++DI L + + Sbjct: 173 KLYPGTKVMYVTSEIFTNELIAAIRDEKTDEFRLKYRNVDVLLIDDIQFLGGKERTQEEF 232 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH N++++ + +++++ P L SR + + I PD + ++ K Sbjct: 233 FHTFNTLYEANKKIILSSDRPPKEINTLEDRLRSRFEWGLITDIQPPDFETRIAILSKKC 292 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA--LSRGMGITRSLAAEVLKE 241 + + + +I ++E ++ E ++K+ + ++ IT LA + LKE Sbjct: 293 QLEGTPVPQHILEFIASKIETNIRELEGALNKILAYSKLMAPDKEITLELAEKALKE 349 >gi|311696593|gb|ADP99466.1| chromosomal replication initiation protein [marine bacterium HP15] Length = 480 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 39/262 (14%), Positives = 87/262 (33%), Gaps = 34/262 (12%) Query: 13 PDKQKNDQPKNKEEQLFFSFPR----CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSR 65 P + + + Q+ G + + + + + A + P Sbjct: 120 PSVRPKSDTQRRPVQVEGDIKHQSFLNEGFTFETFVEGKSNQLARAASMQVAENPGGAYN 179 Query: 66 VVILVGPSGSGKSCLANIW----------------------SDKSRSTRFSNIAKSLDSI 103 + L G G GK+ L + +D ++ + + I + Sbjct: 180 PLFLYGGVGLGKTHLMHAIGNEIVRRNPKAKVAYLRSERFVADMVKALQLNAINEFKR-- 237 Query: 104 LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 + +L++DI + + FH N++ + +++T FP L S Sbjct: 238 YYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVIVTCDRFPKEIVDMEERLKS 297 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 R V + P+ + +++K + + + A +I Q++ ++ E + + Sbjct: 298 RFGWGLTVMVEPPELETRVAILMKKADQANVKLSSEAAFFIAQKIRSNVRELEGALRLVI 357 Query: 221 NLALSRGMGITRSLAAEVLKET 242 A G IT E LK+ Sbjct: 358 ANAHFTGSEITPPFIRESLKDL 379 >gi|312134083|ref|YP_004001421.1| chromosomal replication initiator protein dnaa [Caldicellulosiruptor owensensis OL] gi|311774134|gb|ADQ03621.1| chromosomal replication initiator protein DnaA [Caldicellulosiruptor owensensis OL] Length = 454 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 36/237 (15%), Positives = 85/237 (35%), Gaps = 30/237 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRLI----DSWPSW-PSRVVILVGPSGSGKSCLANIWSDK-- 87 + + +V + A ++ P + + G G GK+ L + Sbjct: 113 NPKYTFETFVVGNNNRLAHAAALAVAETPPGEKTYNPLFIYGGVGLGKTHLMHAIGHHVL 172 Query: 88 ----------------SRSTRFSNIAKSLDSILIDTRKP--VLLEDIDLLDFND---TQL 126 + + + D + R +L++DI L + + Sbjct: 173 KLYPGTKVMYVTSEIFTNELIAAIRDEKTDEFRLKYRNVDVLLIDDIQFLGGKERTQEEF 232 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH N++++ + +++++ P L SR + + I PD + ++ K Sbjct: 233 FHTFNTLYEANKKIILSSDRPPKEINTLEDRLRSRFEWGLITDIQPPDFETRIAILSKKC 292 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA--LSRGMGITRSLAAEVLKE 241 + + + +I ++E ++ E ++K+ + ++ IT LA + LKE Sbjct: 293 QLEGTPVPQHILEFIASKIETNIRELEGALNKILAYSKLMAPDKEITLELAEKALKE 349 >gi|300857418|ref|YP_003782401.1| chromosomal replication initiator protein [Corynebacterium pseudotuberculosis FRC41] gi|300684872|gb|ADK27794.1| chromosomal replication initiator protein [Corynebacterium pseudotuberculosis FRC41] Length = 526 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 43/266 (16%), Positives = 101/266 (37%), Gaps = 38/266 (14%) Query: 14 DKQKNDQPKNKEEQLFFS----FPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSR 65 ++ + P+ + EQ F+ + D +V + A+ + + P+ Sbjct: 158 EQIPSGTPRTR-EQPSFNPDRALALNPHYTFDSYVVSDSNKLPCSAAIAVAEK-PARAYN 215 Query: 66 VVILVGPSGSGKSCLANI----WSDKSRSTRFSNIA------KSLDSILIDTRKP----- 110 + + G SG GK+ L + + R ++ + ++S+ D ++ Sbjct: 216 PLFIWGDSGLGKTHLMHAVGNYAQYLNPRLRIKYVSSEEFTNEYINSVRDDRQEAFKRKY 275 Query: 111 -----VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 ++++DI L + + FH N+++Q + +++++ P L +R Sbjct: 276 RELDILMVDDIQFLQGKEGTQEEFFHTFNALYQANKQIVLSSDRPPKQLTTLEDRLRTRF 335 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN- 221 +A + I PD + +++K A I D++ I R S+ E ++ Sbjct: 336 QAGLIADIYPPDLETRIAILMKKAASESIVADREAIELIASRFNTSIRELEGAFIRVSAY 395 Query: 222 LALSR----GMGITRSLAAEVLKETQ 243 +L I +A + L++ Sbjct: 396 ASLMSPDKGKHRIDLRIAEKALEDMM 421 >gi|253581087|ref|ZP_04858347.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847623|gb|EES75593.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 451 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 49/273 (17%), Positives = 103/273 (37%), Gaps = 33/273 (12%) Query: 7 DYSFFVPD---KQKNDQPKNKEEQLFFSFPR-CLGISRDDLLVHSAIEQAVRLIDSWPSW 62 D +F +P+ K++ PK + + + D +V S + A + Sbjct: 79 DINFILPEDVPKKEEVSPKAQSQDARCEEAHLNPKYTFDTFVVGSNNKFAQAAALAVAES 138 Query: 63 PS---RVVILVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDTRK----- 109 P + + G +G GK+ L + I S ++ + LI+T + Sbjct: 139 PGDTYNPLFIYGGAGLGKTHLMHSIAHFIIDHDENSKVLYVTSEEFTNELIETIRNGNNS 198 Query: 110 -------------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 +L++DI + + + FH NS+H +++++ P + Sbjct: 199 AMTKFREKYRNIDVLLVDDIQFIIGKESTQEEFFHTFNSLHSAKKQIIISSDKPPKDMEI 258 Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213 SR + + I+LPD + ++ K I++++ YI ++ ++ E Sbjct: 259 LEERFRSRFEWGLIADITLPDYETRMAILHKKEEMDGYDINEEVIKYIANNIKSNIRELE 318 Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 ++K+ A +T LA + LK+ D Sbjct: 319 GAINKVMAFAKLEKKEVTLELAEQALKDIISPD 351 >gi|149925376|ref|ZP_01913640.1| chromosomal replication initiation protein [Limnobacter sp. MED105] gi|149825493|gb|EDM84701.1| chromosomal replication initiation protein [Limnobacter sp. MED105] Length = 463 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 38/238 (15%), Positives = 83/238 (34%), Gaps = 30/238 (12%) Query: 35 CLGISRD----DLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLAN----- 82 ++RD + + A + A + S P + L G G GK+ L + Sbjct: 125 RSRLNRDLCFSNFVSGRANQLARAAAEQVASNPGVSYNPLFLYGGVGLGKTHLIHSIGNR 184 Query: 83 ------------IWSDKSRSTRFSNIAKSLDSILIDTR---KPVLLEDIDLLDF---NDT 124 I +++ S K + +L++DI Sbjct: 185 LLEQNPNTQIRYIHAEQYVSDVVKAYQKKAFEEFKRSYYSLDLLLIDDIQFFGGKSRTQE 244 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + F+ + +++T+ T+P L SR + V I P+ + +++K Sbjct: 245 EFFYAFEQLIAAKKQIIITSDTYPKDIQGMDDRLISRFNSGLTVAIEPPELEMRVAILLK 304 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++I + +A ++ + M ++ E + ++ A +T L E L++ Sbjct: 305 KAEQQKIMFSEDVAFFVAKHMRSNIRELEGALRRIMAFASFHNKPVTMDLVREALRDM 362 >gi|167041954|gb|ABZ06692.1| putative bacterial DnaA protein [uncultured marine microorganism HF4000_137B17] Length = 461 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 86/239 (35%), Gaps = 26/239 (10%) Query: 32 FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKS 88 R +V + E A ++ + P V ++L G G GK+ L + ++ Sbjct: 126 LNTKYTFGR--FVVGKSNELAHAAAEAVSNRPGEVYSPLVLYGAVGLGKTHLMHAIGHRA 183 Query: 89 RSTRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLF 127 + S I + + + K + LL+DI L + F Sbjct: 184 VANGLSLIYATTEEFTNEYIKAIGEGRTEEFRDRYRSTDVLLLDDIQFLIGKEQTQEGFF 243 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++H + +++T+ + + + SRL VV I PD + ++ Sbjct: 244 HTFNALHMTNRQIVITSDRPVSALTLLEDRIQSRLAGGLVVDIQAPDIETRLAILRAKAE 303 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + + + ++ +R+ +++ E ++++ A G + L + D Sbjct: 304 TINQDVSQTVLDFLAERIHKNIRELEGSLNRVVAYADLTGSLLDVELVKRAIDGLADPD 362 >gi|145218823|ref|YP_001129532.1| chromosomal replication initiator protein DnaA [Prosthecochloris vibrioformis DSM 265] gi|145204987|gb|ABP36030.1| chromosomal replication initiator protein DnaA [Chlorobium phaeovibrioides DSM 265] Length = 487 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 42/256 (16%), Positives = 85/256 (33%), Gaps = 36/256 (14%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVIL 69 D + D + E QL + D L+ A S P +++ Sbjct: 135 DSFERDIERF-ETQL------NSKYTFDTLIRGDCNSLAFAAAKSVAQNPGQNAFNPLVI 187 Query: 70 VGPSGSGKSCLANIW-----SDKSRS---------------TRFSNIAKSLDSILIDTRK 109 G G GK+ + ++ + N S T Sbjct: 188 YGGVGLGKTHMMQAIGNTVRQEREGAKVLYVSSEKFAIDFVNAIQNGKIQEFSSFYRTID 247 Query: 110 PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 ++++DI + ++FHI N++HQ + ++++A + L SR Sbjct: 248 VLIIDDIQFFSGKEKTQEEIFHIFNTLHQSNKQIILSADRPIKNIKGIEDRLISRFNWGL 307 Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK-LVDKMDNLALS 225 I PD + + +I+ + +D+ + +I + ++ E +V + +L Sbjct: 308 SADIQPPDYETRKAIILSKLQQSGVDLDENVIEFIANNITDNVRELEGCIVKLLAARSLD 367 Query: 226 RGMGITRSLAAEVLKE 241 I S LK+ Sbjct: 368 N-RDIDLSFTKLTLKD 382 >gi|116688025|ref|YP_833648.1| chromosomal replication initiation protein [Burkholderia cenocepacia HI2424] gi|166201863|sp|A0K2M8|DNAA_BURCH RecName: Full=Chromosomal replication initiator protein DnaA gi|116646114|gb|ABK06755.1| chromosomal replication initiator protein DnaA [Burkholderia cenocepacia HI2424] Length = 525 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 87/234 (37%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWS-----D 86 ++ D+ + A + A P + L G G GK+ L + D Sbjct: 191 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 250 Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128 K+ + A+ S ++ + +D +DLL +D + F+ Sbjct: 251 KAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 310 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + +++T+ T+P L SR + V I P+ + ++++ Sbjct: 311 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 370 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + +A ++ + + ++ E + K+ + G I+ L E LK+ Sbjct: 371 EGVNLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREISIELTKEALKDL 424 >gi|78064659|ref|YP_367428.1| chromosomal replication initiation protein [Burkholderia sp. 383] gi|123729088|sp|Q39L82|DNAA_BURS3 RecName: Full=Chromosomal replication initiator protein DnaA gi|77965404|gb|ABB06784.1| chromosomal replication initiator protein, DnaA [Burkholderia sp. 383] Length = 525 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 87/234 (37%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWS-----D 86 ++ D+ + A + A P + L G G GK+ L + D Sbjct: 191 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 250 Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128 K+ + A+ S ++ + +D +DLL +D + F+ Sbjct: 251 KAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 310 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + +++T+ T+P L SR + V I P+ + ++++ Sbjct: 311 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 370 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + +A ++ + + ++ E + K+ + G I+ L E LK+ Sbjct: 371 EGVNLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREISIELTKEALKDL 424 >gi|56416662|ref|YP_153736.1| chromosomal replication initiation protein [Anaplasma marginale str. St. Maries] gi|71151791|sp|Q5PB48|DNAA_ANAMM RecName: Full=Chromosomal replication initiator protein DnaA gi|56387894|gb|AAV86481.1| chromosomal replication initiator protein [Anaplasma marginale str. St. Maries] Length = 471 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 33/242 (13%), Positives = 87/242 (35%), Gaps = 28/242 (11%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIWS-- 85 P + D+ +V E A + + + L G G GK+ L + + Sbjct: 134 PLDPRFTFDNFVVGKPNELAFAAARRVAESSAPIPGSNPLFLYGGVGLGKTHLMHAIAWY 193 Query: 86 --------------DKSRSTRFSNIAKSLDSILIDTR----KPVLLEDIDLLDFND---T 124 + ++ +S D +L + ++++D+ + D Sbjct: 194 ILNSSVKRKIAYLSAEKFMYQYVTALRSKDIMLFKEQFRSVDILMVDDVQFISGKDSTQE 253 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + FH N++ + L+++A P + SRL V I+ + ++ Sbjct: 254 EFFHTFNALIDQNKQLVISADRSPSDLDGVEDRIKSRLGWGLVADINETTFELRLGILQL 313 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 + + ++ ++ + ++ ++ E ++K+ + G +T A+ +L + + Sbjct: 314 KIEKMGVHVPNEVLEFLAKNIKSNIRELEGALNKVVAHSSLVGRSVTIESASGILSDLLR 373 Query: 245 CD 246 + Sbjct: 374 AN 375 >gi|306834799|ref|ZP_07467863.1| exopolyphosphatase [Corynebacterium accolens ATCC 49726] gi|304569327|gb|EFM44828.1| exopolyphosphatase [Corynebacterium accolens ATCC 49726] Length = 566 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 37/255 (14%), Positives = 95/255 (37%), Gaps = 36/255 (14%) Query: 17 KNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE----QAVRLIDSWPSWPSRVVILVGP 72 + + + + + + ++ S+ AV + ++ P+ + + G Sbjct: 213 REAPAHDPNRETSLN----PKHTFESFVIGSSNRFANGAAVAVAEN-PARAYNPLFIWGG 267 Query: 73 SGSGKSCLANIWSDKSRSTRFSN------------IAKSLDSILIDTRKP---------- 110 SG GK+ L + + + + ++S+ D ++ Sbjct: 268 SGLGKTHLLH--AAGNYAQVLHPGLRVKYVSSEEFTNDYINSLRDDRQESFKRRYRNLDI 325 Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 ++++DI L+ + + FH N++HQ + +++++ P L +R + + Sbjct: 326 LMVDDIQFLEGKESTQEEFFHTFNALHQANKQIILSSDRPPKQLTTLEDRLRTRFEGGLI 385 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 I PD + +++K A +D+ + I R E S+ E + ++ + Sbjct: 386 TDIQPPDLETRIAILMKKAAADGTEVDRSVLELIASRFESSIRELEGALIRVSAYSSLVN 445 Query: 228 MGITRSLAAEVLKET 242 I +A L++ Sbjct: 446 EPINVEMAEIALRDL 460 >gi|288554606|ref|YP_003426541.1| chromosomal replication initiation protein [Bacillus pseudofirmus OF4] gi|288545766|gb|ADC49649.1| chromosomal replication initiation protein [Bacillus pseudofirmus OF4] Length = 450 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 86/235 (36%), Gaps = 34/235 (14%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWS-----DKS 88 + D ++ S A + P++ + + G G GK+ L + Sbjct: 117 KYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVMDHNP 176 Query: 89 RSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHII 130 + ++ + I++ + +L++DI L + + FH Sbjct: 177 NAKVVYLSSEKFTNEFINSIRDNRAVNFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFHTF 236 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N++H+ +++++ P L SR + + I+ PD + ++ K Sbjct: 237 NALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKAEN 296 Query: 191 IFIDKKLAAYIVQRME---RSLV-FAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I ++ YI +++ R L ++V +L + LAAE LK+ Sbjct: 297 LDIPNEVMLYIANQIDTNIRELEGALIRVVA---YSSLINQ-DMNADLAAEALKD 347 >gi|170731357|ref|YP_001763304.1| chromosomal replication initiation protein [Burkholderia cenocepacia MC0-3] gi|226735786|sp|B1K0Y8|DNAA_BURCC RecName: Full=Chromosomal replication initiator protein DnaA gi|169814599|gb|ACA89182.1| chromosomal replication initiator protein DnaA [Burkholderia cenocepacia MC0-3] Length = 525 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 87/234 (37%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWS-----D 86 ++ D+ + A + A P + L G G GK+ L + D Sbjct: 191 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 250 Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128 K+ + A+ S ++ + +D +DLL +D + F+ Sbjct: 251 KAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 310 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + +++T+ T+P L SR + V I P+ + ++++ Sbjct: 311 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 370 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + +A ++ + + ++ E + K+ + G I+ L E LK+ Sbjct: 371 EGVNLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREISIELTKEALKDL 424 >gi|270158402|ref|ZP_06187059.1| chromosomal replication initiator protein DnaA [Legionella longbeachae D-4968] gi|289163354|ref|YP_003453492.1| Chromosomal replication initiator protein DnaA [Legionella longbeachae NSW150] gi|269990427|gb|EEZ96681.1| chromosomal replication initiator protein DnaA [Legionella longbeachae D-4968] gi|288856527|emb|CBJ10322.1| Chromosomal replication initiator protein DnaA [Legionella longbeachae NSW150] Length = 458 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 32/233 (13%), Positives = 83/233 (35%), Gaps = 28/233 (12%) Query: 37 GISRDDLLVHSAIEQAVRL----IDSWPSWPSRVVILVGPSGSGKSCLANIWSD------ 86 + + ++ + A + + + G G GK+ L + + Sbjct: 126 KFVFESFVEGNSNQLARAASMQVAERPGD-AYNPLFIYGGVGLGKTHLMHAIGNSILKNN 184 Query: 87 -------KSRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDF---NDTQLFHI 129 +++ K++ + I+ + +L++DI + + FH Sbjct: 185 PDAKILYLHSERFVADMVKAIQTNSINEFKRFYRSLNALLIDDIQFFAGKDRSQEEFFHT 244 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N++ + +++T+ +P L SR V + P+ + +++ Sbjct: 245 FNALLEGQQQIILTSDRYPKEIEGMEERLKSRFGWGLTVAVEPPELETRVAILISKAEQS 304 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 I + ++A +I +R+ ++ E + ++ A G IT E L++ Sbjct: 305 NIDLPYEVAFFIAKRIRSNVRELEGALRRVIANAHFTGKPITIEFVHEALRDL 357 >gi|251771680|gb|EES52255.1| chromosomal replication initiator protein DnaA [Leptospirillum ferrodiazotrophum] Length = 450 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 94/280 (33%), Gaps = 44/280 (15%) Query: 7 DYSFFVPDKQKNDQPKNKEEQLFFSFPR-CLGISRDD--------------LLVHSAIEQ 51 ++S V +++K+ +P+ + P SRD +V + Sbjct: 75 EFSISVSEEKKSKKPRQTPKP---PLPVLKESASRDPSWESHLISRHTFDTYVVGESNRF 131 Query: 52 AVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID-- 106 A + P + G G GK+ L N + + S+ L S Sbjct: 132 AHAAAFQVSENPGKSYNPFYIYGGVGLGKTHLVNAIGNAILAKIPSSRILYLTSESFLNE 191 Query: 107 ------------------TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTAR 145 T ++++DI + + + FH NS+ + +++T+ Sbjct: 192 MVSAIRFAKMIEFKERYRTIDVLIIDDIQFISTKEKTQEEFFHTFNSLFEKGKQIILTSD 251 Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 P L SR + + I +PD + ++++ I + + + ++ + Sbjct: 252 CPPNEIATLEERLRSRFASGLIADIQIPDFETKVAILIEKMKLEGIALPEDVIYFLATSI 311 Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 + ++ E + ++ G +T + +L Q Sbjct: 312 KSNIRELEGAMIRLGAYQTLMGKPVTMEVTRRLLSNLIQS 351 >gi|219871632|ref|YP_002476007.1| chromosomal replication initiation protein [Haemophilus parasuis SH0165] gi|219691836|gb|ACL33059.1| chromosomal replication initiator protein [Haemophilus parasuis SH0165] Length = 444 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 39/252 (15%), Positives = 92/252 (36%), Gaps = 27/252 (10%) Query: 18 NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPS 73 P + + ++ D+ + + + A + S P L G + Sbjct: 92 TATPPQETQATALRSGLTETLTFDNFVQGKSNQLAKAVAQQVASNPGESHCNPFSLYGGT 151 Query: 74 GSGKSCLANIWSDK-----SRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDF 121 G GK+ L + ++ + ++ ++ K +E+ +D+L Sbjct: 152 GLGKTHLLHAIGNEILKQNPNARVVYIHSERFVQDMVKAIKANTIENFKKFYRSLDVLMI 211 Query: 122 ND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 +D + FH NS+ + +++T+ FP + + SRL I Sbjct: 212 DDIQFFANKEATQEEFFHTFNSLFERSKQIIVTSDVFPKNIENIEERIRSRLSWGVNAAI 271 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 P+ + +++K +R I + + +A ++ Q++ ++ E +++ + I Sbjct: 272 EPPELETRVAILMKKAEERGIELSEDVAFFLGQKLRTNVRELEGALNRAIAWSNFTSRQI 331 Query: 231 TRSLAAEVLKET 242 T E LK+ Sbjct: 332 TIDAVREALKDL 343 >gi|107024098|ref|YP_622425.1| chromosomal replication initiation protein [Burkholderia cenocepacia AU 1054] gi|105894287|gb|ABF77452.1| chromosomal replication initiator protein DnaA [Burkholderia cenocepacia AU 1054] Length = 561 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 87/234 (37%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWS-----D 86 ++ D+ + A + A P + L G G GK+ L + D Sbjct: 227 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 286 Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128 K+ + A+ S ++ + +D +DLL +D + F+ Sbjct: 287 KAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 346 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + +++T+ T+P L SR + V I P+ + ++++ Sbjct: 347 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 406 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + +A ++ + + ++ E + K+ + G I+ L E LK+ Sbjct: 407 EGVNLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREISIELTKEALKDL 460 >gi|237747155|ref|ZP_04577635.1| chromosomal replication initiator protein dnaA [Oxalobacter formigenes HOxBLS] gi|229378506|gb|EEO28597.1| chromosomal replication initiator protein dnaA [Oxalobacter formigenes HOxBLS] Length = 460 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 37/231 (16%), Positives = 84/231 (36%), Gaps = 26/231 (11%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK------S 88 ++ D + A + A + P + L G G GK+ L + ++ S Sbjct: 129 MTFDSFVTGKANQLARAAAIQVANNPGVSYNPLYLFGGVGLGKTHLIHAIGNQVLQDIPS 188 Query: 89 RSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFHIIN 131 R+ + + + ++ + +L++DI + F+ Sbjct: 189 ARIRYIHAEQYVRDVVTAYQRKGFDDFKRYYHSLDMLLIDDIQFFSGKNRTQEEFFYAFE 248 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 ++ +++T+ T+P L SR + V I P+ + +++K I Sbjct: 249 ALIAARKQIIITSDTYPKEISGMDDRLTSRFDSGLTVAIEPPELEMRVAILIKKAGQEGI 308 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + +A ++ + + ++ E + K+ + G IT L E LK+ Sbjct: 309 QLSDDVAFFVAKHLRSNVRELEGALRKILAFSRFHGRDITIELTKEALKDL 359 >gi|206558825|ref|YP_002229585.1| chromosomal replication initiation protein [Burkholderia cenocepacia J2315] gi|226735787|sp|B4E7D1|DNAA_BURCJ RecName: Full=Chromosomal replication initiator protein DnaA gi|198034862|emb|CAR50734.1| chromosomal replication initiator protein DnaA [Burkholderia cenocepacia J2315] Length = 525 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 87/234 (37%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWS-----D 86 ++ D+ + A + A P + L G G GK+ L + D Sbjct: 191 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 250 Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128 K+ + A+ S ++ + +D +DLL +D + F+ Sbjct: 251 KAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 310 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + +++T+ T+P L SR + V I P+ + ++++ Sbjct: 311 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 370 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + +A ++ + + ++ E + K+ + G I+ L E LK+ Sbjct: 371 EGVNLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREISIELTKEALKDL 424 >gi|90415378|ref|ZP_01223312.1| chromosomal replication initiation protein [marine gamma proteobacterium HTCC2207] gi|90332701|gb|EAS47871.1| chromosomal replication initiation protein [marine gamma proteobacterium HTCC2207] Length = 523 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 42/258 (16%), Positives = 87/258 (33%), Gaps = 28/258 (10%) Query: 13 PDKQKNDQPK--NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW---PSWPSRVV 67 P Q+ P + + D + + + A+ P + Sbjct: 165 PVIQRIQAPAIITSAAEHSLKSNLNSAFTFDSFVEGKSNQLALAAAQQVAENPGGSYNPL 224 Query: 68 ILVGPSGSGKSCLANIWSDKSR-------------STRFSNIAKSLDSILID-------T 107 + G G GK+ L + + R +++ K+L ID + Sbjct: 225 FIYGGVGLGKTHLMHAVGNALRMRKPDAKIVYLHSERFVADMVKALQLKAIDEFKQFYRS 284 Query: 108 RKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164 +L++DI + + FH N++ + +++T +P L SR Sbjct: 285 VDALLIDDIQFFAGKERSQEEFFHTYNALLERGQQMILTCDRYPKEINGVEERLKSRFGW 344 Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 V + P+ + +++ I + + A +I QR+ ++ E + ++ A Sbjct: 345 GLTVAVEPPELETRVAILINKAEQAGIELSRDAAFFIAQRIRSNVRELEGALKRVMAHAQ 404 Query: 225 SRGMGITRSLAAEVLKET 242 G I L E LK+ Sbjct: 405 FSGRVIDIDLIRESLKDL 422 >gi|237814480|ref|YP_002898931.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei MSHR346] gi|237504967|gb|ACQ97285.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei MSHR346] Length = 459 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 85/234 (36%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87 ++ D+ + A + A P + L G G GK+ L + ++ Sbjct: 125 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 184 Query: 88 --SRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128 R+ + + + ++ + +L++DI + F+ Sbjct: 185 KPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 244 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + +++T+ T+P L SR + V I P+ + ++++ Sbjct: 245 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 304 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + +A ++ + + ++ E + K+ + G IT L E LK+ Sbjct: 305 EGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDL 358 >gi|94993397|ref|YP_601495.1| chromosomal replication initiation protein [Streptococcus pyogenes MGAS10750] gi|123080159|sp|Q1J960|DNAA_STRPF RecName: Full=Chromosomal replication initiator protein DnaA gi|94546905|gb|ABF36951.1| Chromosomal replication initiator protein dnaA [Streptococcus pyogenes MGAS10750] Length = 451 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 41/268 (15%), Positives = 88/268 (32%), Gaps = 41/268 (15%) Query: 15 KQKNDQPKNKEEQLFFS-FPR-----CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSR 65 +Q + K +Q + P S ++ + AV + + P Sbjct: 87 EQNQTKINQKPKQQALNSLPTVTSDLNPKYSFENFIQGDENRWAVAASIAVANTPGTTYN 146 Query: 66 VVILVGPSGSGKSCLANIWSDKS------------------RSTRFSNIAKSLDSILIDT 107 + + G G GK+ L N + ++D + Sbjct: 147 PLFIWGGPGLGKTHLLNAIGNSVLLENPNARIKYITAENFINEFVIHIRLDTMDELKEKF 206 Query: 108 RKP--VLLEDIDLLD-----FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 R +L++DI L + F+ N++H + +++T+ P L + Sbjct: 207 RNLDLLLIDDIQSLAKKTLSGTQEEFFNTFNALHNNNKQIVLTSDRTPDHLNDLEDRLVT 266 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 R K V I+ PD + ++ + + Y+ + + ++ E + + Sbjct: 267 RFKWGLTVNITPPDFETRVAILTNKIQEYNFIFPQDTIEYLAGQFDSNVRDLEGALKDI- 325 Query: 221 NLALSRGMG----ITRSLAAEVLKETQQ 244 +L IT +AAE ++ +Q Sbjct: 326 --SLVANFKQIDTITVDIAAEAIRARKQ 351 >gi|331092112|ref|ZP_08340943.1| chromosomal replication initiator protein DnaA [Lachnospiraceae bacterium 2_1_46FAA] gi|330402313|gb|EGG81884.1| chromosomal replication initiator protein DnaA [Lachnospiraceae bacterium 2_1_46FAA] Length = 456 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 46/265 (17%), Positives = 93/265 (35%), Gaps = 42/265 (15%) Query: 15 KQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVG 71 K++N + K EQ + + D +V + + A + P + L G Sbjct: 92 KEENQKIKTIIEQANLNH----KYTFDTFVVGNNNQFAHAASLAVAESPGEVYNPLFLYG 147 Query: 72 PSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 G GK+ L + I + +++ + LI+ K Sbjct: 148 GVGLGKTHLMHSIAHFILEEDPTKKVLYVTSETFTNELIEAIKSGRTGNESTMTSFREKY 207 Query: 111 -----VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 +L++D+ + + + FH N +H +++++ P + L +R Sbjct: 208 RNIDVLLIDDVQFIIGKESTQEEFFHTFNHLHVSGKQIILSSDKPPKDFETLEARLRTRF 267 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQI---FIDKKLAAYIVQRME---RSLVFAEKLV 216 + + IS PD + ++ K + I + YI ++ R L + + Sbjct: 268 EWGLIADISSPDYETRMAILQKKIELDNLDVYHIPDDVVEYIANNVKSNIRELEGSLNKL 327 Query: 217 DKMDNLALSRGMGITRSLAAEVLKE 241 + L + I LAAE LK+ Sbjct: 328 IALYKLNYNSSKEIDIPLAAEALKD 352 >gi|291333918|gb|ADD93598.1| chromosomal replication initiation protein [uncultured marine bacterium MedDCM-OCT-S04-C385] Length = 444 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 85/233 (36%), Gaps = 26/233 (11%) Query: 36 LGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK----- 87 + + + + A+ + P + + G G GK+ L + +K Sbjct: 111 ENFTFETFVEGKSNNIALAAAKQVADSPKGAYNPLFIYGGVGLGKTHLMHAVGNKLKEKD 170 Query: 88 --------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLFHI 129 S++ KSL I+ +L++DI + +LFH Sbjct: 171 PSKRIVYIHSERFVSDMVKSLQLGAINEFKQFYRGVDALLIDDIQFFAGKEQSQEELFHT 230 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N++ + +++T +P L SRL V + P+ + +++K + Sbjct: 231 FNALLEGGQQMILTCDRYPKEIEGLEERLKSRLGWGLPVIVEPPELETRVAILLKKAEEL 290 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + A +I +R+ ++ E + ++ A + +L E L++ Sbjct: 291 NLNMPQDCAFFISERIRSNVRELEGALKRVGANAKFANKEVDLNLIKESLRDL 343 >gi|172038580|ref|YP_001805081.1| chromosomal replication initiation protein [Cyanothece sp. ATCC 51142] gi|254777898|sp|B1X0X6|DNAA_CYAA5 RecName: Full=Chromosomal replication initiator protein DnaA gi|171700034|gb|ACB53015.1| chromosomal replication initiator protein [Cyanothece sp. ATCC 51142] Length = 455 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 46/257 (17%), Positives = 84/257 (32%), Gaps = 42/257 (16%) Query: 15 KQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVG 71 + K Q K QL + +V A + P R + L G Sbjct: 103 QNKRQQESPKLNQL------NPRYNFSRFVVGPTNRMAHAASLAVAESPGREFNPLFLCG 156 Query: 72 PSGSGKSCLANIWS-----------------DKSRSTRFSNIAKSLDSILID---TRKPV 111 G GK+ L + ++ + ++I + + T + Sbjct: 157 GVGLGKTHLMQAIAYYRLELYPNANVFYVSTEQFTNDLITSIRQDSMENFREHYRTADIL 216 Query: 112 LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATV 167 L++DI ++ + + FH N++H+ +++ + P L D L SR + Sbjct: 217 LVDDIQFIEGKEYTQEEFFHTFNTLHEAGKQVVIASDRPPKRIP-SLQDRLVSRFSMGLI 275 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---RSLV-FAEKLVDKMDNLA 223 I +PD + ++ K I + + + YI R L + V + Sbjct: 276 ADIQVPDLETRMAILQKKAEYENIRLPRDVIEYIATNYTSNIRELEGALIRAVTYISISG 335 Query: 224 LSRGMGITRSLAAEVLK 240 LS T A VL Sbjct: 336 LSM----TVENIAPVLN 348 >gi|312958103|ref|ZP_07772626.1| hypothetical protein PFWH6_0001 [Pseudomonas fluorescens WH6] gi|311287534|gb|EFQ66092.1| hypothetical protein PFWH6_0001 [Pseudomonas fluorescens WH6] Length = 505 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 35/235 (14%), Positives = 84/235 (35%), Gaps = 34/235 (14%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIW-------- 84 + ++ + + + A +W + + L G G GK+ L + Sbjct: 174 FTFENFVEGKSNQLARAA--AWQVADNPKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKN 231 Query: 85 --------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLF 127 +D ++ + + I + + +L++DI + + F Sbjct: 232 PNAKVVYLHSERFVADMVKALQLNAINEFKR--FYRSVDALLIDDIQFFARKERSQEEFF 289 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H ++ + +++T+ +P L SR V + P+ + +++K Sbjct: 290 HPFTALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAD 349 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ + A +I QR+ ++ E + ++ + G IT L E LK+ Sbjct: 350 QAKVDLPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDL 404 >gi|300814770|ref|ZP_07095018.1| chromosomal replication initiator protein DnaA [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511157|gb|EFK38409.1| chromosomal replication initiator protein DnaA [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 451 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 51/292 (17%), Positives = 108/292 (36%), Gaps = 59/292 (20%) Query: 1 MNLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQA----VRLI 56 +N++ ED + V + ND + + + S + +V + E A + + Sbjct: 82 LNIISEDEAKNVVLNKNNDSFDDNFQSTRLN----PKYSFESFVVGKSNEFAHAASLAVA 137 Query: 57 DSWPSWP----SRVVILVGPSGSGKSCLANIW-----------------SDKSRSTRFSN 95 +++ P S + + G G GK+ L + S++ + ++ Sbjct: 138 ENYED-PRKSYSNPLFIYGGVGLGKTHLMHAIGNFIINQDPTKKILYVTSEQFTNELINS 196 Query: 96 IAKSLDSILIDTRK---PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPV 149 I K+ + + + +L++DI + D + FH N +H+ + +++T+ P Sbjct: 197 IQKNKNEEFRNKYRKVDLLLIDDIQFIADKDRTQEEFFHTFNELHEANKQIVLTSDKPPK 256 Query: 150 SWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME-- 206 L D L SR VV I PD + ++ + + + YI + ++ Sbjct: 257 EIK-SLEDRLISRFAWGLVVDIGQPDLETRIAILRSKANVEGFDVSEDVINYIAENVKSN 315 Query: 207 -RSLV-FAEKLVD---------KMDNLAL--------SRGMGITRSLAAEVL 239 R L ++V ++N A+ + I L EV+ Sbjct: 316 IRELEGALSRVVAYSKLTSGDISIENTAIVLADIFESKKKKVINVKLIKEVI 367 >gi|227831831|ref|YP_002833538.1| chromosomal replication initiator protein [Corynebacterium aurimucosum ATCC 700975] gi|262183095|ref|ZP_06042516.1| chromosomal replication initiation protein [Corynebacterium aurimucosum ATCC 700975] gi|254777897|sp|C3PE72|DNAA_CORA7 RecName: Full=Chromosomal replication initiator protein DnaA gi|227452847|gb|ACP31600.1| chromosomal replication initiator protein [Corynebacterium aurimucosum ATCC 700975] Length = 546 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 37/255 (14%), Positives = 97/255 (38%), Gaps = 36/255 (14%) Query: 17 KNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE----QAVRLIDSWPSWPSRVVILVGP 72 + + N + + + ++ ++ S+ AV + ++ P+ + + G Sbjct: 193 REEPAHNPNREKSLN----PKHTFENFVIGSSNRFANGAAVAVAEN-PARAYNPLFIWGG 247 Query: 73 SGSGKSCLANIWSDKSRSTRFSN------------IAKSLDSILIDTRKP---------- 110 SG GK+ L + + + + ++S+ D ++ Sbjct: 248 SGLGKTHLLH--AAGNYAQVLHPGLRVKYVSSEEFTNDYINSLRDDRQESFKRRYRNLDI 305 Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 ++++DI L+ + + FH N++HQ + +++++ P L +R + + Sbjct: 306 LMVDDIQFLEGKESTQEEFFHTFNALHQANKQIILSSDRPPKQLTTLEDRLRTRFEGGLI 365 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 I PD + +++K + +D+ + I R E S+ E + ++ + Sbjct: 366 TDIQPPDLETRIAILMKKASADGTDVDRSVLELIASRFESSIRELEGALIRVSAYSSLVN 425 Query: 228 MGITRSLAAEVLKET 242 I+ +A L + Sbjct: 426 EPISLEMAEIALHDL 440 >gi|167854885|ref|ZP_02477661.1| DNA polymerase III subunit beta [Haemophilus parasuis 29755] gi|167853952|gb|EDS25190.1| DNA polymerase III subunit beta [Haemophilus parasuis 29755] Length = 444 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 39/252 (15%), Positives = 92/252 (36%), Gaps = 27/252 (10%) Query: 18 NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPS 73 P + + ++ D+ + + + A + S P L G + Sbjct: 92 TATPPQETQATALRSGLTETLTFDNFVQGKSNQLAKAVAQQVASNPGESHCNPFSLYGGT 151 Query: 74 GSGKSCLANIWSDK-----SRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDF 121 G GK+ L + ++ + ++ ++ K +E+ +D+L Sbjct: 152 GLGKTHLLHAIGNEILKQNPNARVVYIHSERFVQDMVKAIKANTIENFKKFYRSLDVLMI 211 Query: 122 ND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 +D + FH NS+ + +++T+ FP + + SRL I Sbjct: 212 DDIQFFANKEATQEEFFHTFNSLFERSKQIIVTSDVFPKNIENIEERIRSRLSWGVNAAI 271 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 P+ + +++K +R I + + +A ++ Q++ ++ E +++ + I Sbjct: 272 EPPELETRVAILMKKAEERGIELSEDVAFFLGQKLRTNVRELEGALNRAIAWSNFTSRQI 331 Query: 231 TRSLAAEVLKET 242 T E LK+ Sbjct: 332 TIDAVREALKDL 343 >gi|148259022|ref|YP_001233149.1| chromosomal replication initiation protein [Acidiphilium cryptum JF-5] gi|146400703|gb|ABQ29230.1| chromosomal replication initiator protein DnaA [Acidiphilium cryptum JF-5] Length = 482 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 36/240 (15%), Positives = 81/240 (33%), Gaps = 27/240 (11%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLANI--WSD 86 P + D +V E A + + L G G GK+ L + W Sbjct: 145 PLDPRFTFDTFVVGKPNEFAYACARRVADGHASPGFNPLFLYGGVGLGKTHLMHAIAWEL 204 Query: 87 KSRSTRFSNIAKSLDSIL------------------IDTRKPVLLEDIDLL---DFNDTQ 125 RS + S + + + + ++++D+ L D + Sbjct: 205 SQRSDEVTVAYMSAEKFMHKFVSALRRQSTIEFKNELRSVDVLMVDDLQFLIGKDGTQEE 264 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 FH N++ ++++A P L +RL V + + ++ Sbjct: 265 FFHTFNALVDSGKQIIVSADKSPSDLSGIEDRLRTRLGCGMVADVHATTYELRLAILEAK 324 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 A + + ++ ++ Q++ ++ E ++++ A +T A EVL + + Sbjct: 325 AARAGVVVPGRVMEFLAQKITANVRELEGALNRLIAHANLFERPVTLETAHEVLHDLLRA 384 >gi|332299202|ref|YP_004441123.1| Chromosomal replication initiator protein dnaA [Porphyromonas asaccharolytica DSM 20707] gi|332176265|gb|AEE11955.1| Chromosomal replication initiator protein dnaA [Porphyromonas asaccharolytica DSM 20707] Length = 475 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 43/258 (16%), Positives = 92/258 (35%), Gaps = 38/258 (14%) Query: 22 KNKEEQLF-FSFPRCLGISRDDLLVHSAIEQA----VRLIDSWPSWPSRVVILVGPSGSG 76 K + QL F +S D + A + + + GPSG G Sbjct: 127 KTEPRQLPDFDSQLKPQLSFDTYYQGESNRTASSIARSIAEKPGQGALNPCFIYGPSGVG 186 Query: 77 KSCLANIWSDKSRSTRFSNIAKSLDSILIDTR-------------------------KPV 111 K+ L + R + L + + + + Sbjct: 187 KTHLCHAI-----GLRIRELYPELKVLYVSSHMFEMQYVAATRANTTNDFINFYQQVDVL 241 Query: 112 LLEDID-LLDFNDTQL--FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168 L++DI L+ TQL F + N ++ +++T+ T PV+ L SR+ + + Sbjct: 242 LIDDIQGLIAKKKTQLTFFQVFNHLYMLGKQIVLTSDTAPVNLAGLEERLISRIAGSLTI 301 Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228 ++ PD D + + + + +++ YI + + S+ + + + A G Sbjct: 302 EVERPDYDLRREYLRHKSEESGSILPQEMIDYIARTVTSSIRGLQGVFFSLITRAAVEGC 361 Query: 229 GITRSLAAEVLKETQQCD 246 +T S +++ +T + + Sbjct: 362 DVTSSFVKKIVSQTVKQE 379 >gi|313886600|ref|ZP_07820313.1| chromosomal replication initiator protein DnaA [Porphyromonas asaccharolytica PR426713P-I] gi|312923956|gb|EFR34752.1| chromosomal replication initiator protein DnaA [Porphyromonas asaccharolytica PR426713P-I] Length = 475 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 43/258 (16%), Positives = 92/258 (35%), Gaps = 38/258 (14%) Query: 22 KNKEEQLF-FSFPRCLGISRDDLLVHSAIEQA----VRLIDSWPSWPSRVVILVGPSGSG 76 K + QL F +S D + A + + + GPSG G Sbjct: 127 KTEPRQLPDFDSQLKPQLSFDTYYQGESNRTASSIARSIAEKPGQGALNPCFIYGPSGVG 186 Query: 77 KSCLANIWSDKSRSTRFSNIAKSLDSILIDTR-------------------------KPV 111 K+ L + R + L + + + + Sbjct: 187 KTHLCHAI-----GLRIRELYPELKVLYVSSHMFEMQYVAATRANTTNDFINFYQQVDVL 241 Query: 112 LLEDID-LLDFNDTQL--FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168 L++DI L+ TQL F + N ++ +++T+ T PV+ L SR+ + + Sbjct: 242 LIDDIQGLIAKKKTQLTFFQVFNHLYMLGKQIVLTSDTAPVNLAGLEERLISRIAGSLTI 301 Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228 ++ PD D + + + + +++ YI + + S+ + + + A G Sbjct: 302 EVERPDYDLRREYLRHKSEESGSILPQEMIDYIARTVTSSIRGLQGVFFSLITRAAVEGC 361 Query: 229 GITRSLAAEVLKETQQCD 246 +T S +++ +T + + Sbjct: 362 DVTSSFVKKIVSQTVKQE 379 >gi|193211677|ref|YP_001997630.1| chromosomal replication initiation protein [Chlorobaculum parvum NCIB 8327] gi|193085154|gb|ACF10430.1| chromosomal replication initiator protein DnaA [Chlorobaculum parvum NCIB 8327] Length = 493 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 38/240 (15%), Positives = 76/240 (31%), Gaps = 29/240 (12%) Query: 30 FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLANIWS 85 F + L+ A S P +++ G G GK+ + Sbjct: 150 FESNLNPKYTFSTLIRGDCNSLAFAAAKSIAQNPGQNAFNPLVIYGGVGLGKTHMMQAIG 209 Query: 86 DKSRSTRFSN--IAKSLDSILIDTRKPV------------------LLEDIDLLDFND-- 123 + R S + S + ID + +++DI + Sbjct: 210 NSVLENRISGAVLYVSSEKFAIDFVNAIQNGNIQEFSAFYRNIDVLIIDDIQFFAGKEKT 269 Query: 124 -TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 ++FHI N++HQ + ++++A L SR I PD + + +I Sbjct: 270 QEEIFHIFNTLHQANKQIILSADRPIKEIKGIEDRLISRFNWGLSTDIQAPDYETRKAII 329 Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEK-LVDKMDNLALSRGMGITRSLAAEVLKE 241 + +D + +I + ++ E +V + +L I LK+ Sbjct: 330 QSKLKQNGVNLDPAVIEFIATNVTNNVRELEGCIVKLLAAHSLDNQ-EIDLQFTKSTLKD 388 >gi|77464920|ref|YP_354424.1| chromosomal replication initiation protein [Rhodobacter sphaeroides 2.4.1] gi|126460789|ref|YP_001041903.1| chromosomal replication initiation protein [Rhodobacter sphaeroides ATCC 17029] gi|332559819|ref|ZP_08414141.1| chromosomal replication initiation protein [Rhodobacter sphaeroides WS8N] gi|123771654|sp|Q3IY61|DNAA_RHOS4 RecName: Full=Chromosomal replication initiator protein DnaA gi|166214695|sp|A3PFL5|DNAA_RHOS1 RecName: Full=Chromosomal replication initiator protein DnaA gi|77389338|gb|ABA80523.1| chromosomal replication initiator protein DnaA [Rhodobacter sphaeroides 2.4.1] gi|126102453|gb|ABN75131.1| chromosomal replication initiator protein DnaA [Rhodobacter sphaeroides ATCC 17029] gi|332277531|gb|EGJ22846.1| chromosomal replication initiation protein [Rhodobacter sphaeroides WS8N] Length = 455 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 36/244 (14%), Positives = 81/244 (33%), Gaps = 31/244 (12%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSD--- 86 P + D +V E A + L G G GK+ L + + Sbjct: 114 PLDARFTFDSFVVGKPNELAHAAARRVAEGGPVTFNPLFLYGGVGLGKTHLMHAIAHDLQ 173 Query: 87 --KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQL 126 + + A+ + + ++++D+ + D + Sbjct: 174 KRQPGARVLYLSAEQFMYRFVQALREREILGFKELFRSVDVLMVDDVQFIAGKDSTQEEF 233 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH N++ + ++++A P + SRL+ VV + D + ++ + Sbjct: 234 FHTFNALVDQNKQIVISADRAPGEIKDLEERIKSRLQCGLVVDLHPTDYELRLGILQQKA 293 Query: 187 -----ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 R + I + ++ R+ ++ E + ++ A G IT LA + L + Sbjct: 294 DFYREQYRGLVIADGVLEFLAHRITTNVRVLEGALTRLFAFASLVGREITLDLAQDCLAD 353 Query: 242 TQQC 245 + Sbjct: 354 ILRA 357 >gi|282881772|ref|ZP_06290430.1| chromosomal replication initiator protein DnaA [Peptoniphilus lacrimalis 315-B] gi|281298382|gb|EFA90820.1| chromosomal replication initiator protein DnaA [Peptoniphilus lacrimalis 315-B] Length = 451 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 49/291 (16%), Positives = 106/291 (36%), Gaps = 57/291 (19%) Query: 1 MNLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQA----VRLI 56 +N++ ED + V + ND + + + S + +V + E A + + Sbjct: 82 LNIISEDEAKNVVLNKNNDSFDDNFQSTRLN----PKYSFESFVVGKSNEFAHAASLAVA 137 Query: 57 DSWPSWP----SRVVILVGPSGSGKSCLANIW-----------------SDKSRSTRFSN 95 +++ P S + + G G GK+ L + S++ + ++ Sbjct: 138 ENYED-PRKSYSNPLFIYGGVGLGKTHLMHAIGNFIINQDPTKKILYVTSEQFTNELINS 196 Query: 96 IAKSLDSILIDTRK---PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPV 149 I K+ + + + +L++DI + D + FH N +H+ + +++T+ P Sbjct: 197 IQKNKNEEFRNKYRKVDLLLIDDIQFIADKDRTQEEFFHTFNELHEANKQIVLTSDKPPK 256 Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME--- 206 L SR VV I PD + ++ + + + YI + ++ Sbjct: 257 EIKSLEERLISRFAWGLVVDIGQPDLETRIAILRSKANVEGFDVSEDVINYIAENVKSNI 316 Query: 207 RSLV-FAEKLVD---------KMDNLAL--------SRGMGITRSLAAEVL 239 R L ++V ++N A+ + I L EV+ Sbjct: 317 RELEGALSRVVAYSKLTSGDISIENTAIVLADIFESKKKKVINVKLIKEVI 367 >gi|154508239|ref|ZP_02043881.1| hypothetical protein ACTODO_00733 [Actinomyces odontolyticus ATCC 17982] gi|153797873|gb|EDN80293.1| hypothetical protein ACTODO_00733 [Actinomyces odontolyticus ATCC 17982] Length = 476 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 36/244 (14%), Positives = 80/244 (32%), Gaps = 32/244 (13%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS--- 88 + D ++ + A P + + G SG GK+ L + Sbjct: 132 NPKFTFDTFVIGPSNRFAHAAALAASETPGTAFNPLFIYGDSGLGKTHLLQAIGHNALSM 191 Query: 89 -------------------RSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND--- 123 + R + S + + L++DI + + Sbjct: 192 MPHLKVRYVNSEEFTNEFINAIRLNKTDNSQVEAFHRRYRELDILLIDDIQFIGDKEQTV 251 Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 FH N++H + +++T+ P + SR + +V + PD + ++ Sbjct: 252 EGFFHTFNALHSANKQIVLTSDLPPAQLKGFEDRMRSRFSSGLLVDVQPPDLETRIAILH 311 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE-T 242 K + + ++ Y+ R+ ++ E + ++ A I +LA +LK+ Sbjct: 312 KKADAEGLEVTPEVFEYVASRISSNIRELEGALVRIGAWASLYQERIDLNLAQMMLKDFV 371 Query: 243 QQCD 246 D Sbjct: 372 SNPD 375 >gi|187250425|ref|YP_001874907.1| DNA replication initiation ATPase [Elusimicrobium minutum Pei191] gi|226735810|sp|B2KAM4|DNAA_ELUMP RecName: Full=Chromosomal replication initiator protein DnaA gi|186970585|gb|ACC97570.1| ATPase involved in DNA replication initiation [Elusimicrobium minutum Pei191] Length = 452 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 40/266 (15%), Positives = 97/266 (36%), Gaps = 36/266 (13%) Query: 11 FVPDKQKNDQPKNKEE--------QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDS---- 58 + D +P+ + ++ F + + + + A R ++ Sbjct: 81 VLEDTTPYKRPEIPPQVMGANYNAKIPFPSRLNPNYTFEGFIEGPSNRFAYRAAEAVVKK 140 Query: 59 WPSWPSRVVILVGPSGSGKSCLANIWSDK-------------SRSTRFSNIAKSLDSILI 105 + +++ G GK+ L + ++ S S +SL + Sbjct: 141 LGERENNPLVIYSTPGLGKTHLLHAIGNRILKENPYAKILYMSGEEFVSEYIESLQNRNP 200 Query: 106 DTRK-------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 + + L++DI + + + F+ N++ + +++T+ P G+ Sbjct: 201 EAFRKKHRSLDCFLMDDIQFVAGKESSVQEFFYTFNALFESKKQIVLTSDRTPQQLGID- 259 Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215 P L SRL + V +I PD + ++ + + + A+I + ++ S+ E Sbjct: 260 PRLSSRLLSGIVSEIKRPDLETRIAILRQKRDTSNFDVGDDVIAFIAEGVQASIRELEGC 319 Query: 216 VDKMDNLALSRGMGITRSLAAEVLKE 241 + ++ G+ T +A EVL + Sbjct: 320 LFRLTTYCNIHGVTPTIPIAREVLSD 345 >gi|58584534|ref|YP_198107.1| chromosomal replication initiation protein [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|71151810|sp|Q5GT09|DNAA_WOLTR RecName: Full=Chromosomal replication initiator protein DnaA gi|58418850|gb|AAW70865.1| ATPase involved in DNA replication initiation, DnaA [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 460 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 40/245 (16%), Positives = 90/245 (36%), Gaps = 34/245 (13%) Query: 33 PRCLGISRDDLLVHSAIEQAVRL-------IDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 P + D+ +V E A ID P S + L G G GK+ L + + Sbjct: 123 PLDPRFTFDNFVVGKPNELAFTAAKRVAESIDPIPG--SNPLFLYGGVGLGKTHLMHAIA 180 Query: 86 --------DKSRSTRFSN--------IAKSLDSILI-----DTRKPVLLEDIDLLDFND- 123 K + S A I++ + ++++D+ + D Sbjct: 181 WHIVNSPSAKRKVVYLSAEKFMYQYITALRSKDIMLFKEQFRSVDVLMVDDVQFISGKDS 240 Query: 124 --TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 + FH N++ + L+++A P + SRL V I+ + + Sbjct: 241 TQEEFFHTFNALIDQNKQLVISADRSPSDLDGVEERIKSRLGWGLVADINETTFELRLGI 300 Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + +++ + + ++ + + ++ E ++K+ + +L G +T A+E L + Sbjct: 301 LQAKVEQMNMYVPQDVLEFLARNIRSNIRELEGALNKVAHTSLI-GRSMTVESASETLMD 359 Query: 242 TQQCD 246 + + Sbjct: 360 LLRSN 364 >gi|307543590|ref|YP_003896069.1| chromosomal replication initiation protein [Halomonas elongata DSM 2581] gi|307215614|emb|CBV40884.1| chromosomal replication initiation protein [Halomonas elongata DSM 2581] Length = 488 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 37/231 (16%), Positives = 81/231 (35%), Gaps = 26/231 (11%) Query: 38 ISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 + + + + + A + P + L G G GK+ L + + + R + Sbjct: 157 FTFETFVEGKSNQLARAASRQVSENPGGAYNPLFLYGGVGLGKTHLMHAVGNALDARREN 216 Query: 95 NIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFND---TQLFHIIN 131 L S + +L++DI + + FH N Sbjct: 217 ARVVYLHSERFVADMVKALQLNAINDFKRFYRSVDALLIDDIQFFAGKERSQEEFFHTFN 276 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 ++ + +++T+ +P L SR V I P+ + +++K ++ Sbjct: 277 ALLEGGQQMILTSDRYPKEISGVEERLKSRFGWGLTVAIEPPELETRVAILMKKADQAKV 336 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + A +I Q++ ++ E + K+ + G IT+ E LK+ Sbjct: 337 NLPHDAAFFIAQKIRSNVRELEGALKKVIADSHFMGKTITQDFIRESLKDL 387 >gi|222152202|ref|YP_002561377.1| chromosomal replication initiation protein [Streptococcus uberis 0140J] gi|254777917|sp|B9DSN7|DNAA_STRU0 RecName: Full=Chromosomal replication initiator protein DnaA gi|222113013|emb|CAR40315.1| chromosomal replication initiator protein [Streptococcus uberis 0140J] Length = 451 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 38/242 (15%), Positives = 79/242 (32%), Gaps = 35/242 (14%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91 S D+ + AV + + P + + G G GK+ L N + Sbjct: 113 NPKYSFDNFIQGDENRWAVAASLAVANTPGTTYNPLFIWGGPGLGKTHLLNAI---GNAV 169 Query: 92 RFSNIAKSLDSILIDT-----------------------RKPVLLEDIDLLD-----FND 123 N + I + +L++DI L Sbjct: 170 LLDNPKARVKYITAENFINEFVIHIRLDTMDELKEKFRNLDLLLIDDIQSLAKKTLLGTQ 229 Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 + F+ N++H + +++T+ P L +R K V I+ PD + ++ Sbjct: 230 EEFFNTFNALHNNNKQIVLTSDRTPDHLNDLEQRLVTRFKWGLTVNITPPDFETRVAILT 289 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA-LSRGMGITRSLAAEVLKET 242 + + Y+ + + ++ E + + +A IT +AAE ++ Sbjct: 290 NKIQEYNFTFPQDTIEYLAGQFDSNVRDLEGALKDISLVANFKEIDKITVDIAAEAIRAR 349 Query: 243 QQ 244 +Q Sbjct: 350 KQ 351 >gi|326402149|ref|YP_004282230.1| chromosomal replication initiator protein DnaA [Acidiphilium multivorum AIU301] gi|325049010|dbj|BAJ79348.1| chromosomal replication initiator protein DnaA [Acidiphilium multivorum AIU301] Length = 490 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 36/240 (15%), Positives = 81/240 (33%), Gaps = 27/240 (11%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLANI--WSD 86 P + D +V E A + + L G G GK+ L + W Sbjct: 153 PLDPRFTFDTFVVGKPNEFAYACARRVADGHASPGFNPLFLYGGVGLGKTHLMHAIAWEL 212 Query: 87 KSRSTRFSNIAKSLDSIL------------------IDTRKPVLLEDIDLL---DFNDTQ 125 RS + S + + + + ++++D+ L D + Sbjct: 213 SQRSDEVTVAYMSAEKFMHKFVSALRRQSTIEFKNELRSVDVLMVDDLQFLIGKDGTQEE 272 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 FH N++ ++++A P L +RL V + + ++ Sbjct: 273 FFHTFNALVDSGKQIIVSADKSPSDLSGIEDRLRTRLGCGMVADVHATTYELRLAILEAK 332 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 A + + ++ ++ Q++ ++ E ++++ A +T A EVL + + Sbjct: 333 AARAGVVVPGRVMEFLAQKITANVRELEGALNRLIAHANLFERPVTLETAHEVLHDLLRA 392 >gi|312897428|ref|ZP_07756852.1| replication initiator protein DnaA [Megasphaera micronuciformis F0359] gi|310621489|gb|EFQ05025.1| replication initiator protein DnaA [Megasphaera micronuciformis F0359] Length = 513 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 46/236 (19%), Positives = 82/236 (34%), Gaps = 28/236 (11%) Query: 37 GISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSD------- 86 + D +V ++ A I P + G SG GK+ L + Sbjct: 176 AYTFDTFVVGNSNRLAHAAAMSIAESPMTKYSPFFIYGDSGLGKTHLMHAIGHYILKHYP 235 Query: 87 --KSRSTRFSNIAKSLDSILIDTRK-----------PVLLEDIDLLDFND---TQLFHII 130 + R + A L + D +L++DI L+ + + FH Sbjct: 236 HLRLRCITSEDFANELIQSIQDKNPESFRQRYRNIDVLLVDDIQFLESKEHTQEEFFHTF 295 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N +++ ++ T+ P + L D L SR + TVV I PD + ++ Sbjct: 296 NKLYKDHKQMVFTSDRPPQNIK-KLEDRLRSRFQGGTVVNIDPPDLETRTAILRNRAKIE 354 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 + IDK+ YI + ++ E + A IT + L+E + Sbjct: 355 HLPIDKEAIDYIASNVSENIRELEGAFIRAQMQASVENSPITLEVTQRALQELVKT 410 >gi|61212638|sp|Q72H87|DNAA_THET2 RecName: Full=Chromosomal replication initiator protein DnaA Length = 436 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 93/239 (38%), Gaps = 30/239 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91 + ++ +V A + P R + + G G GK+ L + S + Sbjct: 103 NPKYTFENFVVGPNNSMAHAAAVAVAESPGRAYNPLFIYGGVGLGKTHLMHA-VGHSVAK 161 Query: 92 RFSNI------AKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLF 127 RF ++ ++ + LI+ + +L++D+ + + + F Sbjct: 162 RFPHLKIEYVSTETFTNELINAIREDRMTEFRERYRSVDLLLVDDVQFIAGKERTQEEFF 221 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++++ +++++ P L SR + + I PD + ++ Sbjct: 222 HTFNALYEAHKQIILSSDRPPKDILTLEARLRSRFEWGLITDIQPPDLETRIAILKMNAE 281 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAE-KLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 R + I + YI +++ ++ E L+ + +L G+ +TR++AA+ L + Sbjct: 282 QRGLRIPEDALEYIARQVTSNIRELEGALMRAIAFASL-NGVELTRAVAAKALSDIFAP 339 >gi|213019238|ref|ZP_03335045.1| chromosomal replication initiator protein DnaA [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212995347|gb|EEB55988.1| chromosomal replication initiator protein DnaA [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 473 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 37/236 (15%), Positives = 86/236 (36%), Gaps = 30/236 (12%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIWS-- 85 P + D+ +V + E A + + L G G GK+ L + + Sbjct: 136 PLDTRFTFDNFVVGKSNELAFTAAKRVAESIDPISGSNPLFLYGGVGLGKTHLMHAIAWD 195 Query: 86 ------DKSRSTRFSN--------IAKSLDSILI-----DTRKPVLLEDIDLLDFND--- 123 K + S A I++ + ++++D+ + D Sbjct: 196 IVNSPSAKRKVVYLSAEKFMYQYITALRSKDIMLFKEQFRSVDVLMVDDVQFISGKDSTQ 255 Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 + FH N++ + L+++A P + SRL V I+ + ++ Sbjct: 256 EEFFHTFNALIDQNKQLVISADRSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQ 315 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 +++ K + ++ + ++ ++ E ++K+ + +L G +T A+E L Sbjct: 316 AKVERMNMYVPKDVLEFLARNIKSNIRELEGALNKVAHTSLI-GRSMTVESASETL 370 >gi|190570479|ref|YP_001974837.1| chromosomal replication initiator protein DnaA [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190356751|emb|CAQ54110.1| chromosomal replication initiator protein DnaA [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 460 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 37/236 (15%), Positives = 86/236 (36%), Gaps = 30/236 (12%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIWS-- 85 P + D+ +V + E A + + L G G GK+ L + + Sbjct: 123 PLDTRFTFDNFVVGKSNELAFTAAKRVAESIDPISGSNPLFLYGGVGLGKTHLMHAIAWD 182 Query: 86 ------DKSRSTRFSN--------IAKSLDSILI-----DTRKPVLLEDIDLLDFND--- 123 K + S A I++ + ++++D+ + D Sbjct: 183 IVNSPSAKRKVVYLSAEKFMYQYITALRSKDIMLFKEQFRSVDVLMVDDVQFISGKDSTQ 242 Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 + FH N++ + L+++A P + SRL V I+ + ++ Sbjct: 243 EEFFHTFNALIDQNKQLVISADRSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQ 302 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 +++ K + ++ + ++ ++ E ++K+ + +L G +T A+E L Sbjct: 303 AKVERMNMYVPKDVLEFLARNIKSNIRELEGALNKVAHTSLI-GRSMTVESASETL 357 >gi|311742163|ref|ZP_07715973.1| DNA-directed DNA replication initiator protein [Aeromicrobium marinum DSM 15272] gi|311314656|gb|EFQ84563.1| DNA-directed DNA replication initiator protein [Aeromicrobium marinum DSM 15272] Length = 491 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 91/234 (38%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD----- 86 ++ ++ S+ A + P + +++ G SG GK+ L + Sbjct: 151 NPRYLFENFVIGSSNRFAHAAAVAAAEAPGKAYNPLVIHGESGLGKTHLLHAIGHYVLGL 210 Query: 87 -KSRSTRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDFND---TQLFH 128 S R+ N + + ++ + +L++DI ++ + + FH Sbjct: 211 YPSSRVRYVNTEEFTNDVINAIGERRTGALKRKYREIDVLLVDDIQFIEGKEATQEEFFH 270 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H + ++MT+ P + L +R + ++ P+ + ++ K + Sbjct: 271 TFNALHNENKQIVMTSDRPPKNLKTLEERLRNRFEWGLTTDVTPPELETRIAILRKKASS 330 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + +I +++ ++ E + + A +G + +LA VLK+ Sbjct: 331 DGLTVPADVLEFIASKVQSNIRELEGALIRATAFANLQGTTVDLNLAQIVLKDL 384 >gi|189345559|ref|YP_001942088.1| chromosomal replication initiation protein [Chlorobium limicola DSM 245] gi|189339706|gb|ACD89109.1| chromosomal replication initiator protein DnaA [Chlorobium limicola DSM 245] Length = 491 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 37/235 (15%), Positives = 79/235 (33%), Gaps = 29/235 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLANIWSDKSRS 90 + + L+ A S P +++ G G GK+ + + R+ Sbjct: 153 NTKYTFETLIRGDCNSLAFAASKSIAQNPGQNAFNPLVIYGGVGLGKTHMIQAIGNSVRT 212 Query: 91 TRFSN--IAKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLF 127 S + S + ID + +++DI + ++F Sbjct: 213 NCLSEKVLYVSSEKFAIDFVNAIQNGKIQEFSSFYRTIDVLIIDDIQFFAGKEKTQEEIF 272 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 HI N++HQ + ++++A L SR I PD + + +I+ Sbjct: 273 HIFNTLHQSNKQIILSADRPIKEIKGIEDRLISRFNWGLSADIQPPDYETRKAIILSKLH 332 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEK-LVDKMDNLALSRGMGITRSLAAEVLKE 241 + +D+ + +I + ++ E +V + +L I LK+ Sbjct: 333 QSGVNLDEAVIEFIATNVTENVRELEGCIVKLLAAQSLDNQ-EIDLQFTKSTLKD 386 >gi|124384274|ref|YP_001028201.1| chromosomal replication initiation protein [Burkholderia mallei NCTC 10229] gi|126449063|ref|YP_001079584.1| chromosomal replication initiation protein [Burkholderia mallei NCTC 10247] gi|254359608|ref|ZP_04975879.1| chromosomal replication initiator protein DnaA [Burkholderia mallei 2002721280] gi|166201864|sp|A3MH48|DNAA_BURM7 RecName: Full=Chromosomal replication initiator protein DnaA gi|166201865|sp|A2S8D2|DNAA_BURM9 RecName: Full=Chromosomal replication initiator protein DnaA gi|124292294|gb|ABN01563.1| chromosomal replication initiator protein DnaA [Burkholderia mallei NCTC 10229] gi|126241933|gb|ABO05026.1| chromosomal replication initiator protein DnaA [Burkholderia mallei NCTC 10247] gi|148028822|gb|EDK86754.1| chromosomal replication initiator protein DnaA [Burkholderia mallei 2002721280] Length = 533 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 85/234 (36%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87 ++ D+ + A + A P + L G G GK+ L + ++ Sbjct: 199 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 258 Query: 88 --SRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128 R+ + + + ++ + +L++DI + F+ Sbjct: 259 KPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 318 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + +++T+ T+P L SR + V I P+ + ++++ Sbjct: 319 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 378 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + +A ++ + + ++ E + K+ + G IT L E LK+ Sbjct: 379 EGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDL 432 >gi|57504597|ref|ZP_00370709.1| chromosomal replication initiator protein DnaA [Campylobacter coli RM2228] gi|57019492|gb|EAL56186.1| chromosomal replication initiator protein DnaA [Campylobacter coli RM2228] Length = 440 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 79/233 (33%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDS-WPSWPSRVVI----LVGPSGSGKSCLANIWSDKSR 89 + + +V + + A + + + G +G GK+ L + S Sbjct: 102 NPSFTFESFVVGDSNKYAYGACKAISQKDKLGKLYNPIFIYGLTGLGKTHLLQAVGNASL 161 Query: 90 STRFSNIAKSLDSILIDTRK------------------PVLLEDIDLLDFND---TQLFH 128 I + ++ + D +L++D+ L D + F Sbjct: 162 EMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEEFFF 221 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 I N I D ++MT+ P L SR + I+ P D +I K Sbjct: 222 IFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIRKKCEF 281 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 I + + YI + ++ E ++ ++ A G IT LA V+K+ Sbjct: 282 NDINLSNDIINYIATSLGDNIREIEGIIISLNAYANILGQEITLELAKSVMKD 334 >gi|89898341|ref|YP_515451.1| chromosomal replication initiation protein [Chlamydophila felis Fe/C-56] gi|89331713|dbj|BAE81306.1| chromosomal replication initiator protein [Chlamydophila felis Fe/C-56] Length = 460 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 34/238 (14%), Positives = 77/238 (32%), Gaps = 34/238 (14%) Query: 34 RCLGISRDDLLVHSAIEQAVRLI-------DSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 ++ + LV + R++ + +P + L GP GSGK+ L Sbjct: 104 VNPEMTFANFLVTPENDLPFRILQEFTKPAEDSSGFPFNPIYLFGPEGSGKTHLMQAAVS 163 Query: 87 ---KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDF---NDTQ 125 +S ++ L+ + + +EDI++ + Sbjct: 164 ALRESGGKILYVVSDLFTEHLVSAIRSGEVQRFRSFYRNVDALFIEDIEVFSGKGATQEE 223 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 FH NS+ +++++ P L SR + V I + L + + Sbjct: 224 FFHTFNSLQMEGKLIVISSAYAPADLKAMEERLISRFEWGVAVPIHPLTKEGLRSFLKRQ 283 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 I I+ ++++ + ++ + + + LA ++L E Sbjct: 284 AEQLSIRIEDTALDFLIRALSSNVKTLIHALTLL------SKRVAYKKLAQQLLYEDD 335 >gi|295691863|ref|YP_003600473.1| chromosomal replication initiator protein dnaa [Lactobacillus crispatus ST1] gi|295029969|emb|CBL49448.1| Chromosomal replication initiator protein dnaA [Lactobacillus crispatus ST1] Length = 455 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 40/251 (15%), Positives = 88/251 (35%), Gaps = 26/251 (10%) Query: 15 KQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVG 71 + + QP E++ + D+ + + A + P + + G Sbjct: 100 EAQVQQPNLPEKEFTKDLKLNEKYTFDNFVQGEGNKLAAGAALAVADSPGSFYNPLFIFG 159 Query: 72 PSGSGKSCLANI-----WSDKSRSTRFSNIAKSLDSILIDTRK---------------PV 111 G GK+ L +++ + +++ + I++ K + Sbjct: 160 GVGLGKTHLMQAVGHQMLAERPNAKVVYIQSETFVNDFINSIKNKTQDKFREKYRTCDLL 219 Query: 112 LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168 L++DI + + FH +++ ++MT+ P L SR V Sbjct: 220 LVDDIQFFAKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFTWGLQV 279 Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228 +I+ PD + ++ + + ID YI +++ ++ E + K+ A Sbjct: 280 EITPPDLETRIAILRRKAETEGLTIDDGTLNYIASQVDTNIRELEGALVKVQAYATIEKA 339 Query: 229 GITRSLAAEVL 239 I +LA E L Sbjct: 340 DIDVNLAREAL 350 >gi|114769644|ref|ZP_01447254.1| chromosomal replication initiation protein [alpha proteobacterium HTCC2255] gi|114549349|gb|EAU52231.1| chromosomal replication initiation protein [alpha proteobacterium HTCC2255] Length = 451 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 39/272 (14%), Positives = 92/272 (33%), Gaps = 39/272 (14%) Query: 11 FVPDKQKNDQPKNKEEQL-FFSFP---RCLGISRDDLLVHSAIEQAVRLIDSWPSW---P 63 P K+ + +P++K + P + D+ +V E A Sbjct: 84 IAPTKKSSIKPESKNTKTGSTDLPGASLDPRYTFDNFVVGKPNELAHAAARRVSEGGDVS 143 Query: 64 SRVVILVGPSGSGKSCLANIWS-----DKSRSTRFSNIAKSLDSILIDTRK--------- 109 + L G G GK+ L + + + A+ + + Sbjct: 144 FNPLFLHGGVGLGKTHLMHAIAWEIKKRDPNARVLYLSAEQFMYRFVQALRFKDTISFKE 203 Query: 110 ------PVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LC 159 ++++D+ + + FH N++ + ++++ PV L D + Sbjct: 204 MFRSVDVLMVDDVQFIAGKSSTQEEFFHTFNALIDQNKQVIISGDRAPVDME-QLEDRIK 262 Query: 160 SRLKAATVVKISLPDDDFLEKVIVKMFADRQ------IFIDKKLAAYIVQRMERSLVFAE 213 SRL+ VV + D + ++ + Q + + + ++ QR+ ++ E Sbjct: 263 SRLQWGLVVDVHPTDYELRLGILQSK-QESQARYNSTVEVSPGVLEFMAQRISSNVRVLE 321 Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 + ++ G +T +A E L + + Sbjct: 322 GALTRLYAFGSLVGRPVTLEMAQESLSDILRA 353 >gi|313682853|ref|YP_004060591.1| chromosomal replication initiator protein dnaa [Sulfuricurvum kujiense DSM 16994] gi|313155713|gb|ADR34391.1| chromosomal replication initiator protein DnaA [Sulfuricurvum kujiense DSM 16994] Length = 443 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 40/234 (17%), Positives = 85/234 (36%), Gaps = 24/234 (10%) Query: 33 PRCLGISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR 89 P + D+ +V + E A R + P + + G G GK+ L + + + Sbjct: 108 PLNPLYTFDNFIVGGSNEFAYRAAIMASKKPGIVYNPLFIHGGVGLGKTHLMHAVGNVLK 167 Query: 90 STRFSNIAKSLDSILIDTRK------------------PVLLEDIDLLDFN---DTQLFH 128 I S+++ L D + +L++D+ L + FH Sbjct: 168 DYGKEVIYTSVENFLNDFSRYLRIGEMEQFKNKYRKCDLLLIDDVQFLSGKVKVQEEFFH 227 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + +++T+ P L SR + V I P+ + ++I K Sbjct: 228 TFEALKNENRQIIITSDQHPKKIKGIEKRLISRFEWGLVADIQSPELETKLEIIKKKCEI 287 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ + YI +E + E ++ K++ + G+ + A V+K Sbjct: 288 NRVSFSNDIIQYIATIIENNTREIEGIITKLNAYSQLMGIEVDLEFARSVMKNQ 341 >gi|171316345|ref|ZP_02905565.1| chromosomal replication initiator protein DnaA [Burkholderia ambifaria MEX-5] gi|171098474|gb|EDT43276.1| chromosomal replication initiator protein DnaA [Burkholderia ambifaria MEX-5] Length = 525 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 87/234 (37%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWS-----D 86 ++ D+ + A + A P + L G G GK+ L + D Sbjct: 191 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 250 Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128 K+ + A+ S ++ + +D +DLL +D + F+ Sbjct: 251 KAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 310 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + +++T+ T+P L SR + V I P+ + ++++ Sbjct: 311 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 370 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + +A ++ + + ++ E + K+ + G I+ L E LK+ Sbjct: 371 EGVNLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREISIELTKEALKDL 424 >gi|170697754|ref|ZP_02888841.1| chromosomal replication initiator protein DnaA [Burkholderia ambifaria IOP40-10] gi|170137369|gb|EDT05610.1| chromosomal replication initiator protein DnaA [Burkholderia ambifaria IOP40-10] Length = 525 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 87/234 (37%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWS-----D 86 ++ D+ + A + A P + L G G GK+ L + D Sbjct: 191 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 250 Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128 K+ + A+ S ++ + +D +DLL +D + F+ Sbjct: 251 KAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 310 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + +++T+ T+P L SR + V I P+ + ++++ Sbjct: 311 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 370 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + +A ++ + + ++ E + K+ + G I+ L E LK+ Sbjct: 371 EGVNLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREISIELTKEALKDL 424 >gi|161506635|ref|YP_001576583.1| chromosomal replication initiation protein [Lactobacillus helveticus DPC 4571] gi|172048332|sp|A8YW41|DNAA_LACH4 RecName: Full=Chromosomal replication initiator protein DnaA gi|160347624|gb|ABX26298.1| Chromosomal replication initiation protein [Lactobacillus helveticus DPC 4571] Length = 455 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 40/247 (16%), Positives = 86/247 (34%), Gaps = 26/247 (10%) Query: 19 DQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGS 75 Q K +Q + + D+ + + A + P + + G G Sbjct: 104 QQEKRAHKQFTKNLKLNEKYTFDNFVQGEGNKLAAGAALAVADSPGSFYNPLFIFGGVGL 163 Query: 76 GKSCLANIW-----SDKSRSTRFSNIAKSLDSILIDTRK---------------PVLLED 115 GK+ L +++ + +++ + I++ K +L++D Sbjct: 164 GKTHLMQAIGHQMLAERPNAKVVYIQSETFVNDFINSIKNKTQDQFREKYRTCDLLLVDD 223 Query: 116 IDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 I + + FH +++ ++MT+ P L SR V+I+ Sbjct: 224 IQFFAKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFTWGLQVEITP 283 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232 PD + ++ + + ID YI +++ ++ E + K+ A I Sbjct: 284 PDLETRIAILRRKAEAEGLVIDDNTLDYIASQVDTNIRELEGALVKVQAYATIERADINV 343 Query: 233 SLAAEVL 239 +LA E L Sbjct: 344 NLAREAL 350 >gi|115350057|ref|YP_771896.1| chromosomal replication initiation protein [Burkholderia ambifaria AMMD] gi|172059068|ref|YP_001806720.1| chromosomal replication initiation protein [Burkholderia ambifaria MC40-6] gi|122324479|sp|Q0BJW1|DNAA_BURCM RecName: Full=Chromosomal replication initiator protein DnaA gi|226735785|sp|B1YPZ0|DNAA_BURA4 RecName: Full=Chromosomal replication initiator protein DnaA gi|115280045|gb|ABI85562.1| chromosomal replication initiator protein DnaA [Burkholderia ambifaria AMMD] gi|171991585|gb|ACB62504.1| chromosomal replication initiator protein DnaA [Burkholderia ambifaria MC40-6] Length = 525 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 87/234 (37%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWS-----D 86 ++ D+ + A + A P + L G G GK+ L + D Sbjct: 191 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 250 Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128 K+ + A+ S ++ + +D +DLL +D + F+ Sbjct: 251 KAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 310 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + +++T+ T+P L SR + V I P+ + ++++ Sbjct: 311 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 370 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + +A ++ + + ++ E + K+ + G I+ L E LK+ Sbjct: 371 EGVNLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREISIELTKEALKDL 424 >gi|53724901|ref|YP_101862.1| chromosomal replication initiation protein [Burkholderia mallei ATCC 23344] gi|52428324|gb|AAU48917.1| chromosomal replication initiator protein DnaA [Burkholderia mallei ATCC 23344] Length = 518 Score = 106 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 85/234 (36%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87 ++ D+ + A + A P + L G G GK+ L + ++ Sbjct: 184 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 243 Query: 88 --SRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128 R+ + + + ++ + +L++DI + F+ Sbjct: 244 KPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 303 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + +++T+ T+P L SR + V I P+ + ++++ Sbjct: 304 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 363 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + +A ++ + + ++ E + K+ + G IT L E LK+ Sbjct: 364 EGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDL 417 >gi|326793323|ref|YP_004311143.1| Chromosomal replication initiator protein dnaA [Marinomonas mediterranea MMB-1] gi|326544087|gb|ADZ89307.1| Chromosomal replication initiator protein dnaA [Marinomonas mediterranea MMB-1] Length = 514 Score = 106 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 34/236 (14%), Positives = 80/236 (33%), Gaps = 30/236 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW------- 84 + D+ + + + A + P + + G G GK+ L Sbjct: 180 NNSFTFDNFVEGKSNQLAHAAALQVAENPGGAYNPLFIYGGVGLGKTHLMQAVGTELMRH 239 Query: 85 ---------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQL 126 +D ++ + + I + +L++DI D + Sbjct: 240 NPNAKVVYLHSERFVADMVKALQLNAINDFKR--YYRSVDALLIDDIQFFAGKDRTQEEF 297 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH N++ + +++T +P L SR V + P+ + ++++ Sbjct: 298 FHTFNALLEGGQQMILTCDRYPKEIQGLEDRLKSRFGWGLTVAVEPPELETRVAILMRKA 357 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + A +I Q++ ++ E + ++ + G IT E LK+ Sbjct: 358 EESGVKLSYDSAFFIAQKIRSNVRELEGALKRVIANSHFTGRAITPDFVRESLKDL 413 >gi|146295086|ref|YP_001178857.1| chromosomal replication initiator protein DnaA [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145408662|gb|ABP65666.1| chromosomal replication initiator protein DnaA [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 454 Score = 106 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 36/237 (15%), Positives = 85/237 (35%), Gaps = 30/237 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRLI----DSWPSW-PSRVVILVGPSGSGKSCLANIWSDK-- 87 + + +V + A ++ P + + G G GK+ L + Sbjct: 113 NPKYTFETFVVGNNNRLAHAAALAVAETPPGEKTYNPLFIYGGVGLGKTHLMHAIGHHVL 172 Query: 88 ----------------SRSTRFSNIAKSLDSILIDTRKP--VLLEDIDLLDFND---TQL 126 + + + D + R +L++DI L + + Sbjct: 173 KLYPDTKVMYVTSEIFTNELIAAIRDEKTDEFRMKYRNVDVLLIDDIQFLGGKERTQEEF 232 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH N++++ + +++++ P L SR + + I PD + ++ K Sbjct: 233 FHTFNTLYEANKKIILSSDRPPKEINTLEDRLRSRFEWGLITDIQPPDFETRIAILSKKC 292 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA--LSRGMGITRSLAAEVLKE 241 + + + +I ++E ++ E ++K+ + ++ IT LA + LKE Sbjct: 293 QLEGTPVPQHILEFIASKIETNIRELEGALNKILAYSKLMAPDKEITLELAEKALKE 349 >gi|73747957|ref|YP_307196.1| chromosomal replication initiator protein DnaA [Dehalococcoides sp. CBDB1] gi|73659673|emb|CAI82280.1| chromosomal replication initiator protein DnaA [Dehalococcoides sp. CBDB1] Length = 444 Score = 106 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 41/259 (15%), Positives = 89/259 (34%), Gaps = 28/259 (10%) Query: 8 YSFFVPDKQKNDQPK-NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV 66 + + P+ NK++Q P + + +V S A + P + Sbjct: 80 FQLIQSGQVPAAVPQTNKQKQ---ESPFNPRYTFESFIVGSCNRMAHAASLAAAQNPGKS 136 Query: 67 ---VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV------------ 111 + + +G GK+ L + R + S + D + Sbjct: 137 YNPLYIYAEAGLGKTHLLQAIGHLANLNRRKALYVSGEQFTTDFISSIRNGQTEEFRSRY 196 Query: 112 ---------LLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 ++ I + + LFH N +H + ++++A + P S L SR Sbjct: 197 RDVDLLLLDDVQFIGGKEQTEECLFHTFNDLHNSNRQIVISADSPPKSLPQLAERLRSRF 256 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 + ++I PD+ +++ ++ Y+ Q ++ ++ E ++++ Sbjct: 257 EWGLTIEIEPPDEKTRLELLQLKAEQSGTELNMDTLEYLAQAVKHNIRELEGSLNRVLAY 316 Query: 223 ALSRGMGITRSLAAEVLKE 241 A IT LAA L + Sbjct: 317 ARLLRAAITPDLAARALSD 335 >gi|218244895|ref|YP_002370266.1| chromosomal replication initiation protein [Cyanothece sp. PCC 8801] gi|226735800|sp|B7JYF1|DNAA_CYAP8 RecName: Full=Chromosomal replication initiator protein DnaA gi|218165373|gb|ACK64110.1| chromosomal replication initiator protein DnaA [Cyanothece sp. PCC 8801] Length = 453 Score = 106 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 37/232 (15%), Positives = 75/232 (32%), Gaps = 26/232 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDK---- 87 + +V A + P R + L G G GK+ L + Sbjct: 115 NPRYTFSRFVVGPTNRMAHAASLAVAESPGREFNPLFLCGGVGLGKTHLMQAIAHYRLEL 174 Query: 88 -SRSTRFSNIAKSLDSILIDT---------------RKPVLLEDIDLLDFND---TQLFH 128 + F + + LI +L++DI ++ + +LFH Sbjct: 175 YPNAKVFYVSTEQFTNDLIAAIRQDSMERFREHYRRADFLLIDDIQFIEGKEYTQEELFH 234 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H+ +++ + P L SR + I +PD + ++ K Sbjct: 235 TFNTLHEAGKQVVLASDRAPKRIPTLQDRLISRFSMGLIADIQVPDLETRMAILQKKAQY 294 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + + + YI ++ E + + G+ +T A VL Sbjct: 295 ENMRLPRDVVEYIATNYTSNIRELEGALIRAIAYTSISGLSMTVQNIAPVLN 346 >gi|46199910|ref|YP_005577.1| chromosomal replication initiator protein dnaA [Thermus thermophilus HB27] gi|46197537|gb|AAS81950.1| chromosomal replication initiator protein dnaA [Thermus thermophilus HB27] Length = 446 Score = 106 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 93/239 (38%), Gaps = 30/239 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91 + ++ +V A + P R + + G G GK+ L + S + Sbjct: 113 NPKYTFENFVVGPNNSMAHAAAVAVAESPGRAYNPLFIYGGVGLGKTHLMHA-VGHSVAK 171 Query: 92 RFSNI------AKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLF 127 RF ++ ++ + LI+ + +L++D+ + + + F Sbjct: 172 RFPHLKIEYVSTETFTNELINAIREDRMTEFRERYRSVDLLLVDDVQFIAGKERTQEEFF 231 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++++ +++++ P L SR + + I PD + ++ Sbjct: 232 HTFNALYEAHKQIILSSDRPPKDILTLEARLRSRFEWGLITDIQPPDLETRIAILKMNAE 291 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAE-KLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 R + I + YI +++ ++ E L+ + +L G+ +TR++AA+ L + Sbjct: 292 QRGLRIPEDALEYIARQVTSNIRELEGALMRAIAFASL-NGVELTRAVAAKALSDIFAP 349 >gi|302329715|gb|ADL19909.1| Chromosomal replication initiation protein [Corynebacterium pseudotuberculosis 1002] Length = 603 Score = 106 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 42/266 (15%), Positives = 101/266 (37%), Gaps = 38/266 (14%) Query: 14 DKQKNDQPKNKEEQLFFS----FPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSR 65 ++ + P+ + EQ F+ + D +V + A+ + + P+ Sbjct: 235 EQIPSGTPRTR-EQPSFNPDRALALNPHYTFDSYVVSDSNKLPCSAAIAVAEK-PARAYN 292 Query: 66 VVILVGPSGSGKSCLANI----WSDKSRSTRFSNIA------KSLDSILIDTRKP----- 110 + + G SG GK+ L + + R ++ + ++S+ D ++ Sbjct: 293 PLFIWGDSGLGKTHLMHAVGNYAQYLNPRLRIKYVSSEEFTNEYINSVRDDRQEAFKRKY 352 Query: 111 -----VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 ++++DI L + + FH N+++Q + +++++ P L +R Sbjct: 353 RELDILMVDDIQFLQGKEGTQEEFFHTFNALYQANKQIVLSSDRPPKQLTTLEDRLRTRF 412 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN- 221 +A + I PD + +++K A I D++ I R S+ E ++ Sbjct: 413 QAGLIADIYPPDLETRIAILMKKAASESIVADREAIELIASRFNTSIRELEGAFIRVSAY 472 Query: 222 LALSR----GMGITRSLAAEVLKETQ 243 +L + +A + L++ Sbjct: 473 ASLMSPDKGKHRVDLRIAEKALEDMM 498 >gi|227893838|ref|ZP_04011643.1| DNA-directed DNA replication initiator protein [Lactobacillus ultunensis DSM 16047] gi|227864327|gb|EEJ71748.1| DNA-directed DNA replication initiator protein [Lactobacillus ultunensis DSM 16047] Length = 460 Score = 106 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 44/259 (16%), Positives = 87/259 (33%), Gaps = 29/259 (11%) Query: 10 FFVPDKQKNDQ-PKNKEEQLFF--SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV 66 P+ Q + + + K EQ F + D+ + + A + P Sbjct: 97 IVTPEPQHDIRIRQEKREQKEFTKDLKLNEKYTFDNFVQGEGNKLAAGAALAVADSPGSF 156 Query: 67 ---VILVGPSGSGKSCLANIWSDK-------SRSTRFSNIAKSLDSILIDTRK------- 109 + + G G GK+ L + +++ + D I K Sbjct: 157 YNPLFIFGGVGLGKTHLMQAIGHQMLVERPNAKAVYIQSETFVNDFINSIKNKTQDQFRE 216 Query: 110 ------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 +L++DI + + FH +++ ++MT+ P L S Sbjct: 217 KYRTCDLLLVDDIQFFTKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVS 276 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 R V+I+ PD + ++ + + ID YI +++ ++ E + K+ Sbjct: 277 RFTWGLQVEITPPDLETRIAILRRKAEAEGLTIDDDTLDYIASQVDTNIRELEGALVKVQ 336 Query: 221 NLALSRGMGITRSLAAEVL 239 A I +LA E L Sbjct: 337 AYATIEKADINVNLAREAL 355 >gi|229496699|ref|ZP_04390413.1| chromosomal replication initiator protein DnaA [Porphyromonas endodontalis ATCC 35406] gi|229316596|gb|EEN82515.1| chromosomal replication initiator protein DnaA [Porphyromonas endodontalis ATCC 35406] Length = 471 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 35/238 (14%), Positives = 85/238 (35%), Gaps = 27/238 (11%) Query: 36 LGISRDDLLVHSAIEQAVRLIDS----WPSWPSRVVILVGPSGSGKSCLANI--WSDKSR 89 + D + + + A+ L + GP G GK+ + N W + Sbjct: 137 PPFTFDSFIRGESNDVALSLARRICVEPGDAMMNPFFIYGPPGVGKTHMMNAMGWEILRQ 196 Query: 90 STRFSNIAKSLDSILIDTRKP------------------VLLEDIDLLDFND---TQLFH 128 + + + + +LL+DI L+ + F Sbjct: 197 HSDLRVLYVTTLQFVQQFTAASKNKKVPDFIKYYQQIDVLLLDDIQELEGKERSQQAFFE 256 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 I N ++ +++T+ + + SR+ + +I PD +++ K+ + Sbjct: 257 IFNHLYSLGKQIVLTSDRSVSDFNALSERIVSRMAGSLTAQIKRPDLCLRREILNKLASQ 316 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + + ++++ +IV+ S+ + ++ + A G I S + E+L T + + Sbjct: 317 GGVVLTEEVSDFIVKNASHSVREIDGVLSSIFLSASVTGSPIDLSFSREILSRTIRME 374 >gi|257057920|ref|YP_003135808.1| chromosomal replication initiation protein [Cyanothece sp. PCC 8802] gi|256588086|gb|ACU98972.1| chromosomal replication initiator protein DnaA [Cyanothece sp. PCC 8802] Length = 453 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 37/232 (15%), Positives = 75/232 (32%), Gaps = 26/232 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDK---- 87 + +V A + P R + L G G GK+ L + Sbjct: 115 NPRYTFSRFVVGPTNRMAHAASLAVAESPGREFNPLFLCGGVGLGKTHLMQAIAHYRLEL 174 Query: 88 -SRSTRFSNIAKSLDSILIDT---------------RKPVLLEDIDLLDFND---TQLFH 128 + F + + LI +L++DI ++ + +LFH Sbjct: 175 YPNAKVFYVSTEQFTNDLIAAIRQDSMERFREHYRRADFLLIDDIQFIEGKEYTQEELFH 234 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H+ +++ + P L SR + I +PD + ++ K Sbjct: 235 TFNTLHEAGKQVVLASDRAPKRIPTLQDRLISRFSMGLIADIQVPDLETRMAILQKKAQY 294 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + + + YI ++ E + + G+ +T A VL Sbjct: 295 ENMRLPRDVVEYIATNYTSNIRELEGALIRAIAYTSISGLSMTVQNIAPVLN 346 >gi|146276060|ref|YP_001166219.1| chromosomal replication initiation protein [Rhodobacter sphaeroides ATCC 17025] gi|145554301|gb|ABP68914.1| chromosomal replication initiator protein DnaA [Rhodobacter sphaeroides ATCC 17025] Length = 461 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 37/244 (15%), Positives = 82/244 (33%), Gaps = 31/244 (12%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSR 89 P + D +V E A + L G G GK+ L + + + + Sbjct: 120 PLDSRFTFDSFVVGKPNELAHAAARRVAEGGPVTFNPLFLYGGVGLGKTHLMHAIAHELQ 179 Query: 90 STRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFND---TQL 126 + L + L + ++++D+ + D + Sbjct: 180 KRQPGARVLYLSAEQFMYRFVQALREREILGFKELFRSVDVLMVDDVQFIAGKDSTQEEF 239 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH N++ + ++++A P + SRL+ VV + D + ++ + Sbjct: 240 FHTFNALVDQNKQIVISADRAPGEIKDLEERIKSRLQCGLVVDLHPTDYELRLGILQQKA 299 Query: 187 -----ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 R + I + ++ R+ ++ E + ++ A G IT LA + L + Sbjct: 300 DFYREQYRGLVIADGVLEFLAHRITTNVRVLEGALTRLFAFASLVGREITLDLAQDCLAD 359 Query: 242 TQQC 245 + Sbjct: 360 ILRA 363 >gi|227877540|ref|ZP_03995601.1| DNA-directed DNA replication initiator protein [Lactobacillus crispatus JV-V01] gi|256843831|ref|ZP_05549318.1| chromosomal replication initiator protein DnaA [Lactobacillus crispatus 125-2-CHN] gi|256849614|ref|ZP_05555046.1| chromosomal replication initiator protein dnaA [Lactobacillus crispatus MV-1A-US] gi|262046282|ref|ZP_06019245.1| chromosomal replication initiator protein DnaA [Lactobacillus crispatus MV-3A-US] gi|227862863|gb|EEJ70321.1| DNA-directed DNA replication initiator protein [Lactobacillus crispatus JV-V01] gi|256613736|gb|EEU18938.1| chromosomal replication initiator protein DnaA [Lactobacillus crispatus 125-2-CHN] gi|256713730|gb|EEU28719.1| chromosomal replication initiator protein dnaA [Lactobacillus crispatus MV-1A-US] gi|260573612|gb|EEX30169.1| chromosomal replication initiator protein DnaA [Lactobacillus crispatus MV-3A-US] Length = 455 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 41/259 (15%), Positives = 90/259 (34%), Gaps = 29/259 (11%) Query: 10 FFVPDKQKN---DQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV 66 P +++ QP E++ + D+ + + A + P Sbjct: 92 IVTPAPKRDAQVQQPNLPEKEFTKDLKLNEKYTFDNFVQGEGNKLAAGAALAVADSPGSF 151 Query: 67 ---VILVGPSGSGKSCLANI-----WSDKSRSTRFSNIAKSLDSILIDTRK--------- 109 + + G G GK+ L +++ + +++ + I++ K Sbjct: 152 YNPLFIFGGVGLGKTHLMQAVGHQMLAERPNAKVVYIQSETFVNDFINSIKNKTQDKFRE 211 Query: 110 ------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 +L++DI + + FH +++ ++MT+ P L S Sbjct: 212 KYRTCDLLLVDDIQFFAKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVS 271 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 R V+I+ PD + ++ + + ID YI +++ ++ E + K+ Sbjct: 272 RFTWGLQVEITPPDLETRIAILRRKAETEGLTIDDGTLNYIASQVDTNIRELEGALVKVQ 331 Query: 221 NLALSRGMGITRSLAAEVL 239 A I +LA E L Sbjct: 332 AYATIEKADIDVNLAREAL 350 >gi|118594214|ref|ZP_01551561.1| dnaA; chromosomal replication initiator protein [Methylophilales bacterium HTCC2181] gi|118439992|gb|EAV46619.1| dnaA; chromosomal replication initiator protein [Methylophilales bacterium HTCC2181] Length = 445 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 33/232 (14%), Positives = 89/232 (38%), Gaps = 26/232 (11%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDKSRSTRF 93 + ++ + A + A P + + G G GK+ L + + ++ + Sbjct: 113 SFNFENFVTGKANQLACAAARQIAEKPGTTYNPLFIYGGVGLGKTHLMHAIGNHLKAIQP 172 Query: 94 SNIAKSLDSILI--------------------DTRKPVLLEDIDLLDF---NDTQLFHII 130 + K L + + +L++DI + + F+ Sbjct: 173 NAKVKYLHAERYVHDVVKAYENKDFDSFKKNYHSLDLLLIDDIQFIAKKNRTQEEFFYAF 232 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N++ + +++T ++P L +R V I P+ + +++K + + Sbjct: 233 NTLIENKKQIIITCDSYPKEIVGVDERLRTRFSWGLTVSIDPPELEMRVAILLKKALEHK 292 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 I + +++A ++ +++ ++ E ++++ ++ G I LA E LK+ Sbjct: 293 IKLSEEVAFFVAKQIRSNVRELEGALNRIVAMSNFTGKPIDLGLAKESLKDL 344 >gi|289431956|ref|YP_003461829.1| chromosomal replication initiator protein DnaA [Dehalococcoides sp. GT] gi|288945676|gb|ADC73373.1| chromosomal replication initiator protein DnaA [Dehalococcoides sp. GT] Length = 444 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 41/259 (15%), Positives = 89/259 (34%), Gaps = 28/259 (10%) Query: 8 YSFFVPDKQKNDQPK-NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV 66 + + P+ NK++Q P + + +V S A + P + Sbjct: 80 FQLIQSGQVPAAVPQTNKQKQ---ESPFNPRYTFESFIVGSCNRMAHAASLAAAQNPGKS 136 Query: 67 ---VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV------------ 111 + + +G GK+ L + R + S + D + Sbjct: 137 YNPLYIYAEAGLGKTHLLQAIGHLANLNRRKALYVSGEQFTTDFISSIRNGQTEEFRSRY 196 Query: 112 ---------LLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 ++ I + + LFH N +H + ++++A + P S L SR Sbjct: 197 RDVDLLLLDDVQFIGGKEQTEECLFHTFNDLHNSNRQIVISADSPPKSLPQLAERLRSRF 256 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 + ++I PD+ +++ ++ Y+ Q ++ ++ E ++++ Sbjct: 257 EWGLTIEIEPPDEKTRLELLQLKAEQSGTELNMDTLEYLAQAVKHNIRELEGSLNRVLAY 316 Query: 223 ALSRGMGITRSLAAEVLKE 241 A IT LAA L + Sbjct: 317 ARLLRAAITPDLAARALSD 335 >gi|163785265|ref|ZP_02179928.1| chromosomal replication initiation protein [Hydrogenivirga sp. 128-5-R1-1] gi|159879465|gb|EDP73306.1| chromosomal replication initiation protein [Hydrogenivirga sp. 128-5-R1-1] Length = 347 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 46/278 (16%), Positives = 110/278 (39%), Gaps = 36/278 (12%) Query: 2 NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFP---------RCLGISRDDLLVHSAIEQA 52 NL +D + V +++ D +N++ Q+ P + +L++ + + A Sbjct: 63 NLTGKDLAVEVISQEEVDL-RNEKSQIEKELPQDKLIRNINLNPKYTFSNLIIGNCNKIA 121 Query: 53 VRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD-----KSRSTRFSNIAKSLDSIL 104 + + P ++ + + G G GK+ + + + R+ A + S L Sbjct: 122 YKAAIAVAENPGKIYNPLFIYGGIGLGKTHILHATAHYMLSKNPRANIIYTTADAFMSEL 181 Query: 105 ID---------------TRKPVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTART 146 I +L++D+ L + + ++I N++H +++++ T Sbjct: 182 IAYMQKGSILDFRRRYKNIDLLLIDDVQFLVGKERTQVEFYYIFNALHLIGKQVILSSDT 241 Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206 P L SR + +V++ PD D +I K ++ ++ + + +I + + Sbjct: 242 PPSKLKGIQERLLSRFSSGLIVEVKPPDIDTKLSIIRKKASEMKMNLPHDVMLFIAKTVN 301 Query: 207 RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 ++ E + K+ + IT + EVLK+ + Sbjct: 302 TNIRELEGSLMKLKAYSEIMERQITLEMTREVLKDICE 339 >gi|225873717|ref|YP_002755176.1| chromosomal replication initiator protein DnaA [Acidobacterium capsulatum ATCC 51196] gi|225794217|gb|ACO34307.1| chromosomal replication initiator protein DnaA [Acidobacterium capsulatum ATCC 51196] Length = 478 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 42/264 (15%), Positives = 96/264 (36%), Gaps = 35/264 (13%) Query: 13 PDKQKNDQPKNK-----EEQLFFSFPR----CLGISRDDLLVHSAIEQAVRLIDSWPSWP 63 P +P + +Q F + + D ++ S + A ++ P Sbjct: 113 PGNAGAQRPAQRLNGAMPQQSRFDWSTAAQLNPRYTFDAFVIGSGNQFARAAAEAVAERP 172 Query: 64 SRV---VILVGPSGSGKSCLANIWSDK------SRSTRFSNIAKSLDSILIDTR------ 108 S+ + L G G GK+ L + + S S + ++ K + ++ R Sbjct: 173 SKAYNPLFLYGGVGMGKTHLMHAIGHEVKLRNPSASICYVSVEKFTNEMISSLRYDKMTT 232 Query: 109 --------KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 +L++DI L + + FH N++H+ +++ + P Sbjct: 233 FRDKFRSVDLLLIDDIQFLSQKERTQEEFFHTFNALHENMKQIVIASDRPPKELPEIEDR 292 Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 L SR + + I PD + ++ K + + +A +I + ++ E + Sbjct: 293 LRSRFEWGLIADIQPPDLETKVAILQKKAESEHVLLPTDVALFIASNVRTNVRELEGALT 352 Query: 218 KMDNLALSRGMGITRSLAAEVLKE 241 ++ + G+ I+ + + LK+ Sbjct: 353 RLFAWSQLNGVEISLATTQQCLKQ 376 >gi|121599001|ref|YP_994142.1| chromosomal replication initiation protein [Burkholderia mallei SAVP1] gi|126451895|ref|YP_001064388.1| chromosomal replication initiation protein [Burkholderia pseudomallei 1106a] gi|134281353|ref|ZP_01768061.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei 305] gi|167001180|ref|ZP_02266979.1| chromosomal replication initiator protein DnaA [Burkholderia mallei PRL-20] gi|217423994|ref|ZP_03455494.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei 576] gi|242317321|ref|ZP_04816337.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei 1106b] gi|254184148|ref|ZP_04890739.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei 1655] gi|254194550|ref|ZP_04900981.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei S13] gi|254298586|ref|ZP_04966037.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei 406e] gi|166201866|sp|A1V7D9|DNAA_BURMS RecName: Full=Chromosomal replication initiator protein DnaA gi|166201867|sp|A3NPW7|DNAA_BURP0 RecName: Full=Chromosomal replication initiator protein DnaA gi|121227811|gb|ABM50329.1| chromosomal replication initiator protein DnaA [Burkholderia mallei SAVP1] gi|126225537|gb|ABN89077.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei 1106a] gi|134247020|gb|EBA47106.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei 305] gi|157808658|gb|EDO85828.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei 406e] gi|169651300|gb|EDS83993.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei S13] gi|184214680|gb|EDU11723.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei 1655] gi|217393057|gb|EEC33079.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei 576] gi|242140560|gb|EES26962.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei 1106b] gi|243063007|gb|EES45193.1| chromosomal replication initiator protein DnaA [Burkholderia mallei PRL-20] Length = 533 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 85/234 (36%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87 ++ D+ + A + A P + L G G GK+ L + ++ Sbjct: 199 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 258 Query: 88 --SRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128 R+ + + + ++ + +L++DI + F+ Sbjct: 259 KPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 318 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + +++T+ T+P L SR + V I P+ + ++++ Sbjct: 319 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 378 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + +A ++ + + ++ E + K+ + G IT L E LK+ Sbjct: 379 EGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDL 432 >gi|257054090|ref|YP_003131922.1| chromosomal replication initiation protein [Saccharomonospora viridis DSM 43017] gi|256583962|gb|ACU95095.1| chromosomal replication initiator protein DnaA [Saccharomonospora viridis DSM 43017] gi|260600338|gb|ACX47006.1| chromosomal replication initiator protein DnaA [Saccharomonospora viridis] Length = 597 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 38/238 (15%), Positives = 91/238 (38%), Gaps = 26/238 (10%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRS- 90 + D ++ ++ A + PSR + + G SG GK+ L + ++ Sbjct: 257 NEKYTFDTFVIGASNRFAHAAAVAVAEAPSRAYNPLFVWGESGLGKTHLLHAVGHYAQRL 316 Query: 91 -----TRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDFND---TQLFH 128 R+ + + + + R +L++DI L+ + + FH Sbjct: 317 FPGMRVRYVSTEEFTNDFINSLRDDRKVAFQRRYRDIDILLVDDIQFLEGKEGTQEEFFH 376 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H + +++++ P L +R + + I P+ + ++ K A Sbjct: 377 TFNTLHNANKQIVVSSDRPPKRLETLEERLRTRFEWGLITDIQPPELETRIAILRKKAAQ 436 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 ++ + ++ +I R+E ++ E + ++ A + LA VL++ D Sbjct: 437 DRLAVPGEVLEFIAARVEANIRELEGALIRVTAFASLNQQPVDVGLAEVVLRDLMPTD 494 >gi|188590796|ref|YP_001795396.1| chromosomal replication initiation protein [Cupriavidus taiwanensis LMG 19424] gi|226735798|sp|B2AFZ7|DNAA_CUPTR RecName: Full=Chromosomal replication initiator protein DnaA gi|170937690|emb|CAP62674.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Cupriavidus taiwanensis LMG 19424] Length = 589 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 39/257 (15%), Positives = 92/257 (35%), Gaps = 33/257 (12%) Query: 12 VPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VI 68 +P Q +D + ++ D+ + A + A + P + + Sbjct: 239 MPGHQPSDTVHERSR-------LNPILTFDNFVTGKANQLARAAAIQVANNPGKSYNPLY 291 Query: 69 LVGPSGSGKSCLAN-----------------IWSDKSRSTRFSNIAKSLDSILID---TR 108 L G G GK+ L + I +++ S + + Sbjct: 292 LYGGVGLGKTHLIHSIGNHMLMENPRARIRYIHAEQYVSDVVKAYQRKAFDEFKRYYHSL 351 Query: 109 KPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 +L++DI + F+ ++ + +++T+ T+P L SR + Sbjct: 352 DLLLIDDIQFFSGKNRTQEEFFYAFEALIANRAQVIITSDTYPKEITGIDDRLISRFDSG 411 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 V I P+ + +++K A + + +++A ++ + + ++ E + K+ + Sbjct: 412 LTVAIEPPELEMRVAILMKKAAAENVNVPEEVAFFVAKHLRSNVRELEGALRKILAFSNF 471 Query: 226 RGMGITRSLAAEVLKET 242 G IT + E LK+ Sbjct: 472 HGKDITIEVTREALKDL 488 >gi|147668653|ref|YP_001213471.1| chromosomal replication initiator protein DnaA [Dehalococcoides sp. BAV1] gi|146269601|gb|ABQ16593.1| chromosomal replication initiator protein DnaA [Dehalococcoides sp. BAV1] Length = 444 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 41/259 (15%), Positives = 89/259 (34%), Gaps = 28/259 (10%) Query: 8 YSFFVPDKQKNDQPK-NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV 66 + + P+ NK++Q P + + +V S A + P + Sbjct: 80 FQLIQSGQVPAAVPQTNKQKQ---ESPFNPRYTFESFIVGSCNRMAHAASLAAAQNPGKS 136 Query: 67 ---VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV------------ 111 + + +G GK+ L + R + S + D + Sbjct: 137 YNPLYIYAEAGLGKTHLLQAIGHLANLNRRKALYVSGEQFTTDFISSIRNGQTEEFRSRY 196 Query: 112 ---------LLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 ++ I + + LFH N +H + ++++A + P S L SR Sbjct: 197 RDVDLLLLDDVQFIGGKEQTEECLFHTFNDLHNSNRQIVISADSPPKSLPQLAERLRSRF 256 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 + ++I PD+ +++ ++ Y+ Q ++ ++ E ++++ Sbjct: 257 EWGLTIEIEPPDEKTRLELLQLKAEQSGTELNMDTLEYLAQAVKHNIRELEGSLNRVLAY 316 Query: 223 ALSRGMGITRSLAAEVLKE 241 A IT LAA L + Sbjct: 317 ARLLRAAITPDLAARALSD 335 >gi|55981942|ref|YP_145239.1| chromosomal replication initiation protein [Thermus thermophilus HB8] gi|14194700|sp|Q9X9D5|DNAA_THET8 RecName: Full=Chromosomal replication initiator protein DnaA gi|4572641|emb|CAB40110.1| initiator protein DnaA [Thermus thermophilus] gi|55773355|dbj|BAD71796.1| chromosomal replication initiator protein DnaA [Thermus thermophilus HB8] Length = 436 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 93/239 (38%), Gaps = 30/239 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91 + ++ +V A + P R + + G G GK+ L + S + Sbjct: 103 NPKYTFENFVVGPNNSMAHAAAVAVAESPGRAYNPLFIYGGVGLGKTHLMHA-VGHSVAK 161 Query: 92 RFSNI------AKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLF 127 RF ++ ++ + LI+ + +L++D+ + + + F Sbjct: 162 RFPHLRIEYVSTETFTNELINAIREDRMTEFRERYRSVDLLLVDDVQFIAGKERTQEEFF 221 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++++ +++++ P L SR + + I PD + ++ Sbjct: 222 HTFNALYEAHKQIILSSDRPPKDILTLEARLRSRFEWGLITDIQPPDLETRIAILKMNAE 281 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAE-KLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 R + I + YI +++ ++ E L+ + +L G+ +TR++AA+ L + Sbjct: 282 QRGLRIPEDALEYIARQVTSNIRELEGALMRAIAFASL-NGVELTRAVAAKALSDIFAP 339 >gi|227506187|ref|ZP_03936236.1| chromosomal replication initiation protein [Corynebacterium striatum ATCC 6940] gi|227197211|gb|EEI77259.1| chromosomal replication initiation protein [Corynebacterium striatum ATCC 6940] Length = 537 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 37/255 (14%), Positives = 96/255 (37%), Gaps = 36/255 (14%) Query: 17 KNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE----QAVRLIDSWPSWPSRVVILVGP 72 + + + + + ++ ++ S+ AV + ++ P+ + + G Sbjct: 184 REAPAHDPNREESLN----PKHTFENFVIGSSNRFANGAAVAVAEN-PARAYNPLFIWGG 238 Query: 73 SGSGKSCLANIWSDKSRSTRFSN------------IAKSLDSILIDTRKP---------- 110 SG GK+ L + + + + ++S+ D ++ Sbjct: 239 SGLGKTHLLH--AAGNYAQLLHPGLRVKYVSSEEFTNDYINSLRDDRQESFKRRYRNLDI 296 Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 ++++DI L+ + + FH N++HQ + +++++ P L +R + + Sbjct: 297 LMVDDIQFLEGKESTQEEFFHTFNALHQANKQIILSSDRPPKQLTTLEDRLRTRFEGGLI 356 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 I PD + +++K A +D+ + I R E S+ E + ++ + Sbjct: 357 TDIQPPDLETRIAILMKKAAADGTEVDRSVLELIASRFESSIRELEGALIRVSAYSSLVN 416 Query: 228 MGITRSLAAEVLKET 242 I+ +A L + Sbjct: 417 EPISLEMAEIALHDL 431 >gi|282858609|ref|ZP_06267771.1| chromosomal replication initiator protein DnaA [Prevotella bivia JCVIHMP010] gi|282588613|gb|EFB93756.1| chromosomal replication initiator protein DnaA [Prevotella bivia JCVIHMP010] Length = 467 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 37/263 (14%), Positives = 87/263 (33%), Gaps = 30/263 (11%) Query: 13 PDKQKNDQPKNKEEQLF-FSFPRCLGISRDDLLVHSAIEQAV----RLIDSWPSWPSRVV 67 P + N P + L S ++ + + + + + + + Sbjct: 108 PTVRGNQSPTVIDAVLPDIDSQLDPHKSFNNYVEGDSNKMPLTIGLAIAEHPNKNQFNPL 167 Query: 68 ILVGPSGSGKSCL---------------------ANIWSDKSRSTRFSNIAKSLDSILID 106 + GPSG GK+ L A ++ + ++ +N Sbjct: 168 FIYGPSGCGKTHLINAIGLKVKKLYPQKRVLYVSARLFQVQYTNSVRTNTTNDF-INFYQ 226 Query: 107 TRKPVLLEDID---LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 T ++++DI FHI N + + +++ + PV L +R Sbjct: 227 TIDVLIVDDIQEWMTATKTQDTFFHIFNHLFRNGKRIILASDRPPVDLEGMNDRLLTRFV 286 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 A + ++ P+ ++ + I + + +I Q S+ + +++ + + Sbjct: 287 AGLITELEKPNIQLCVDILHSKIKRDGLIIPENVIQFIAQTANGSVRDLQGVINSLLAYS 346 Query: 224 LSRGMGITRSLAAEVLKETQQCD 246 + I LA V+K + D Sbjct: 347 VVYNSSIDMRLAERVIKRAVKID 369 >gi|323524378|ref|YP_004226531.1| chromosomal replication initiator protein DnaA [Burkholderia sp. CCGE1001] gi|323381380|gb|ADX53471.1| chromosomal replication initiator protein DnaA [Burkholderia sp. CCGE1001] Length = 538 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 88/234 (37%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIW-----SD 86 ++ D+ + A + A P + L G G GK+ L + D Sbjct: 204 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLMD 263 Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128 K+ + A+ S ++ + +D +DLL +D + F+ Sbjct: 264 KAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 323 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + +++T+ T+P L SR + V I P+ + ++++ Sbjct: 324 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 383 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + +++ +A ++ + + ++ E + K+ + G IT L E LK+ Sbjct: 384 EFVSLNEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDL 437 >gi|293191011|ref|ZP_06609055.1| DnaA [Actinomyces odontolyticus F0309] gi|292820698|gb|EFF79664.1| DnaA [Actinomyces odontolyticus F0309] Length = 479 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 36/244 (14%), Positives = 80/244 (32%), Gaps = 32/244 (13%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS--- 88 + D ++ + A P + + G SG GK+ L + Sbjct: 135 NPKFTFDTFVIGPSNRFAHAAALAASETPGTAFNPLFIYGDSGLGKTHLLQAIGHNALSM 194 Query: 89 -------------------RSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND--- 123 + R + S + + L++DI + + Sbjct: 195 MPHLKVRYVNSEEFTNEFINAIRLNKTDNSQVEAFHRRYRELDILLIDDIQFIGDKEQTV 254 Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 FH N++H + +++T+ P + SR + +V + PD + ++ Sbjct: 255 EGFFHTFNALHSANKQIVLTSDLPPAQLKGFEDRMRSRFSSGLLVDVQPPDLETRIAILH 314 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE-T 242 K + + ++ Y+ R+ ++ E + ++ A I +LA +LK+ Sbjct: 315 KKADAEGLEVTPEVFEYVASRISSNIRELEGALVRIGAWASLYQERIDLNLAQMMLKDFV 374 Query: 243 QQCD 246 D Sbjct: 375 SNPD 378 >gi|294507379|ref|YP_003571437.1| Chromosomal replication initiator protein dnaA [Salinibacter ruber M8] gi|294343707|emb|CBH24485.1| Chromosomal replication initiator protein dnaA [Salinibacter ruber M8] Length = 564 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 79/234 (33%), Gaps = 27/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV----VILVGPSGSGKSCLANIWS----D 86 + D+ + A + P +++ G G GK+ LA + + Sbjct: 222 RPEYTFDEFVEGDGNRLARSAAFAVAQEPGSTNYNPLLVYGGVGLGKTHLAQAVANYALE 281 Query: 87 KSRSTRF---------SNIAKSLDSILIDT-------RKPVLLEDIDLLDFND---TQLF 127 + + R S +S+ I ++++D+ + + F Sbjct: 282 HNTAERVLYVSSDRFTSQFVQSVRENRIAAFSSYYRQADLLIVDDVQFFGEKEKTQEEFF 341 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 HI N +HQ + + A P L SR + I PD + ++ + A Sbjct: 342 HIFNDLHQNGKQIFLCADRPPAEIPGIEERLLSRFQWGLSADIQRPDLETRIAILQRKAA 401 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I + + I QR++ ++ E + ++ L + A L+E Sbjct: 402 RQDIAVSPDVLELIAQRIDSNVRQLEGALTRLTALVQLDDRTLDLDTARRFLRE 455 >gi|315605508|ref|ZP_07880545.1| DNA-directed DNA replication initiator protein [Actinomyces sp. oral taxon 180 str. F0310] gi|315312775|gb|EFU60855.1| DNA-directed DNA replication initiator protein [Actinomyces sp. oral taxon 180 str. F0310] Length = 476 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 36/244 (14%), Positives = 80/244 (32%), Gaps = 32/244 (13%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS--- 88 + D ++ + A P + + G SG GK+ L + Sbjct: 132 NPKFTFDTFVIGPSNRFAHAAALAASETPGTAFNPLFIYGDSGLGKTHLLQAIGHNALSM 191 Query: 89 -------------------RSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND--- 123 + R + S + + L++DI + + Sbjct: 192 MPHLKVRYVNSEEFTNEFINAIRLNKTDNSQVEAFHRRYRELDILLIDDIQFIGDKEQTV 251 Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 FH N++H + +++T+ P + SR + +V + PD + ++ Sbjct: 252 EGFFHTFNALHSANKQIVLTSDLPPAQLKGFEDRMRSRFSSGLLVDVQPPDLETRIAILH 311 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE-T 242 K + + ++ Y+ R+ ++ E + ++ A I +LA +LK+ Sbjct: 312 KKADAEGLEVTPEVFEYVASRISSNIRELEGALVRIGAWASLYQERIDLNLAQMMLKDFV 371 Query: 243 QQCD 246 D Sbjct: 372 SNPD 375 >gi|221640841|ref|YP_002527103.1| chromosomal replication initiation protein [Rhodobacter sphaeroides KD131] gi|221161622|gb|ACM02602.1| Chromosomal replication initiator protein dnaA [Rhodobacter sphaeroides KD131] Length = 447 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 36/244 (14%), Positives = 81/244 (33%), Gaps = 31/244 (12%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSD--- 86 P + D +V E A + L G G GK+ L + + Sbjct: 106 PLDARFTFDSFVVGKPNELAHAAARRVAEGGPVTFNPLFLYGGVGLGKTHLMHAIAHDLQ 165 Query: 87 --KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQL 126 + + A+ + + ++++D+ + D + Sbjct: 166 KRQPGARVLYLSAEQFMYRFVQALREREILGFKELFRSVDVLMVDDVQFIAGKDSTQEEF 225 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH N++ + ++++A P + SRL+ VV + D + ++ + Sbjct: 226 FHTFNALVDQNKQIVISADRAPGEIKDLEERIKSRLQCGLVVDLHPTDYELRLGILQQKA 285 Query: 187 -----ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 R + I + ++ R+ ++ E + ++ A G IT LA + L + Sbjct: 286 DFYREQYRGLVIADGVLEFLAHRITTNVRVLEGALTRLFAFASLVGREITLDLAQDCLAD 345 Query: 242 TQQC 245 + Sbjct: 346 ILRA 349 >gi|294053542|ref|YP_003547200.1| chromosomal replication initiator protein DnaA [Coraliomargarita akajimensis DSM 45221] gi|293612875|gb|ADE53030.1| chromosomal replication initiator protein DnaA [Coraliomargarita akajimensis DSM 45221] Length = 469 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 30/211 (14%), Positives = 73/211 (34%), Gaps = 26/211 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKS--- 88 + ++ +V S + A + + P R + + G +G GK+ L + + + Sbjct: 131 NPRNTFENFVVGSGNQLAHAASIAVANAPGRAYNPLFVFGETGLGKTHLMHAVAHQMLVN 190 Query: 89 --RSTRFSNIAKSLDSILIDTR---------------KPVLLEDIDLLDFND---TQLFH 128 + + + I +L++DI L + + FH Sbjct: 191 NPNARIAYVSTEKFTNEFIRAIQENKLAKFRKYYRTVDALLVDDIHFLSGKESTQEEFFH 250 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N + + + + + L SR + V + PD + ++ K Sbjct: 251 TFNDLFESGRQIFLASDRPANEIERLENRLISRFQWGLVTDMQAPDYETRVAILRKKAIA 310 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 I +D + ++ +R+ R++ E + ++ Sbjct: 311 MDITLDDSIVDFLAERVSRNVRRMEGALTRI 341 >gi|57239018|ref|YP_180154.1| chromosomal replication initiation protein [Ehrlichia ruminantium str. Welgevonden] gi|58578957|ref|YP_197169.1| chromosomal replication initiation protein [Ehrlichia ruminantium str. Welgevonden] gi|58617015|ref|YP_196214.1| chromosomal replication initiation protein [Ehrlichia ruminantium str. Gardel] gi|71151797|sp|Q5FHH8|DNAA_EHRRG RecName: Full=Chromosomal replication initiator protein DnaA gi|71151798|sp|Q5HBP0|DNAA_EHRRW RecName: Full=Chromosomal replication initiator protein DnaA gi|57161097|emb|CAH58004.1| chromosomal replication initiator protein DnaA [Ehrlichia ruminantium str. Welgevonden] gi|58416627|emb|CAI27740.1| Chromosomal replication initiator protein DNAA [Ehrlichia ruminantium str. Gardel] gi|58417583|emb|CAI26787.1| Chromosomal replication initiator protein DNAA [Ehrlichia ruminantium str. Welgevonden] Length = 464 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 38/242 (15%), Positives = 88/242 (36%), Gaps = 28/242 (11%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIWS-- 85 P + D+ +V E A S + + L G G GK+ L + + Sbjct: 127 PLDPRFTFDNFVVGKPNELAFAAARRVAESNSPISGSNPLFLYGGVGLGKTHLMHAIAWY 186 Query: 86 --------------DKSRSTRFSNIAKSLDSILIDTR----KPVLLEDIDLLDFND---T 124 + ++ +S D +L + ++++D+ + D Sbjct: 187 IIKSCSKRKIAYLSAEKFMYQYVTALRSKDIMLFKEQFRSVDILMVDDVQFISGKDSTQE 246 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + FH N++ + L+++A P + SRL V I+ + ++ Sbjct: 247 EFFHTFNALIDQNKQLVISADRSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQL 306 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 I I K+ ++ + ++ ++ E ++K+ + G IT A+++L + + Sbjct: 307 KVEKMGINIPNKVLEFLAKNIKSNIRELEGALNKVVAHSSLVGCSITLDTASDILSDLLR 366 Query: 245 CD 246 + Sbjct: 367 AN 368 >gi|21672843|ref|NP_660908.1| chromosomal replication initiator protein DnaA [Chlorobium tepidum TLS] gi|38257655|sp|Q8KGG6|DNAA_CHLTE RecName: Full=Chromosomal replication initiator protein DnaA gi|21645891|gb|AAM71250.1| chromosomal replication initiator protein DnaA [Chlorobium tepidum TLS] Length = 493 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 39/258 (15%), Positives = 86/258 (33%), Gaps = 30/258 (11%) Query: 13 PDKQKND-QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVV 67 P ++ + + + + + F + L+ A S P + Sbjct: 132 PGQKASAERERLEIARPRFESNLNPKYTFSTLVRGDCNSLAFAASKSIAQNPGQNAFNPL 191 Query: 68 ILVGPSGSGKSCLANIWSDKSRSTRFSN--IAKSLDSILIDTRKPV-------------- 111 ++ G G GK+ + + R ++ + S + ID + Sbjct: 192 VIYGGVGLGKTHMMQAIGNSVLENRITDAVLYVSSEKFAIDFVNAIQNGNIQEFSAFYRN 251 Query: 112 ----LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164 +++DI + ++FHI N++HQ + ++++A L SR Sbjct: 252 IDVLIIDDIQFFAGKEKTQEEIFHIFNTLHQSNKQIILSADRPIKEIKGIEDRLISRFNW 311 Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK-LVDKMDNLA 223 I PD + + +I + +D + +I + ++ E +V + + Sbjct: 312 GLSTDIQAPDYETRKAIIQSKLKQSGVSLDPVVIEFIATNVTSNVRELEGCIVKLLAAHS 371 Query: 224 LSRGMGITRSLAAEVLKE 241 L I A LK+ Sbjct: 372 LDNQ-EIDLQFAKSTLKD 388 >gi|227549437|ref|ZP_03979486.1| chromosomal replication initiation protein [Corynebacterium lipophiloflavum DSM 44291] gi|227078514|gb|EEI16477.1| chromosomal replication initiation protein [Corynebacterium lipophiloflavum DSM 44291] Length = 534 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 37/255 (14%), Positives = 97/255 (38%), Gaps = 36/255 (14%) Query: 17 KNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE----QAVRLIDSWPSWPSRVVILVGP 72 + N + + + + ++ ++ S+ AV + ++ P+ + + G Sbjct: 180 RETPAHNPDREASLN----PKYTFENFVIGSSNRFANGAAVAVAEN-PARAYNPLFIWGG 234 Query: 73 SGSGKSCLANIWSDKSRSTRFSN------------IAKSLDSILIDTRKP---------- 110 SG GK+ L + + + + ++S+ D ++ Sbjct: 235 SGLGKTHLLH--AAGNYAKLLQPNLRISYVSSEEFTNDYINSVRDDRQESFKRRYRNLDI 292 Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 ++++DI L+ + + FH N++HQ + +++++ P L +R + + Sbjct: 293 LMVDDIQFLEGKEGTQEEFFHTFNALHQQNKQIILSSDRPPRQLTTLEDRLRTRFEGGLI 352 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 + PD + +++K A +D + I + E S+ E + ++ + Sbjct: 353 TDVQPPDLETRIAILMKKAAADGTHVDHAVLELIASQFESSIRELEGALIRVSAYSSLIN 412 Query: 228 MGITRSLAAEVLKET 242 IT +A L++ Sbjct: 413 EPITLEVAQVALRDL 427 >gi|225867618|ref|YP_002743566.1| chromosomal replication initiator protein [Streptococcus equi subsp. zooepidemicus] gi|259645261|sp|C0MC62|DNAA_STRS7 RecName: Full=Chromosomal replication initiator protein DnaA gi|225700894|emb|CAW97552.1| chromosomal replication initiator protein [Streptococcus equi subsp. zooepidemicus] Length = 450 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 43/267 (16%), Positives = 89/267 (33%), Gaps = 40/267 (14%) Query: 15 KQKNDQPKNKEEQLFFSFPR-----CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRV 66 +Q++ + EQ F P S D+ + AV + + P Sbjct: 87 EQQHQGQQGYTEQAFQQLPAVQSDLNPKYSFDNFIQGDENRWAVAASIAVANTPGTTYNP 146 Query: 67 VILVGPSGSGKSCLANIWSDKS------------------RSTRFSNIAKSLDSILIDTR 108 + + G G GK+ L N + ++D + R Sbjct: 147 LFIWGGPGLGKTHLLNAIGNSVLLENPNARIKYITAENFINEFVVHIRLDTMDELKEKFR 206 Query: 109 KP--VLLEDIDLLD-----FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161 +L++DI L + F+ N++H + +++T+ P L +R Sbjct: 207 NLDLLLIDDIQSLAKKTLSGTQEEFFNTFNALHNNNKQIVLTSDRTPDHLNDLEDRLVTR 266 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 K V I+ PD + ++ + + Y+ + + ++ E + + Sbjct: 267 FKWGLTVNITPPDFETRVAILTNKIQEYNFVFPQDTIEYLAGQFDSNVRDLEGALKDI-- 324 Query: 222 LALSRGMG----ITRSLAAEVLKETQQ 244 +L IT +AAE ++ +Q Sbjct: 325 -SLVANFKQIDTITVDIAAEAIRARKQ 350 >gi|312792284|ref|YP_004025207.1| chromosomal replication initiator protein dnaa [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179424|gb|ADQ39594.1| chromosomal replication initiator protein DnaA [Caldicellulosiruptor kristjanssonii 177R1B] Length = 454 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 35/237 (14%), Positives = 85/237 (35%), Gaps = 30/237 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRLI----DSWPSW-PSRVVILVGPSGSGKSCLANIWSDK-- 87 + + +V + A ++ P + + G G GK+ L + Sbjct: 113 NPKYTFETFVVGNNNRLAHAAALAVAETPPGERTYNPLFIYGGVGLGKTHLMHAIGHHVL 172 Query: 88 ----------------SRSTRFSNIAKSLDSILIDTRKP--VLLEDIDLLDFND---TQL 126 + + + + + R +L++DI L + + Sbjct: 173 KLYPGTKVMYVTSEIFTNELIAAIRDEKTNEFRLKYRNVDVLLIDDIQFLGGKERTQEEF 232 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH N++++ + +++++ P L SR + + I PD + ++ K Sbjct: 233 FHTFNTLYEANKKIILSSDRPPKEINTLEDRLRSRFEWGLITDIQPPDFETRIAILSKKC 292 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA--LSRGMGITRSLAAEVLKE 241 + + + +I ++E ++ E ++K+ + ++ IT LA + LKE Sbjct: 293 QLEGTPVPQHILEFIASKIETNIRELEGALNKILAYSKLMAPDKEITLELAEKALKE 349 >gi|288802026|ref|ZP_06407467.1| DNA replication initiator protein, ATPase [Prevotella melaninogenica D18] gi|288335461|gb|EFC73895.1| DNA replication initiator protein, ATPase [Prevotella melaninogenica D18] Length = 468 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 35/281 (12%), Positives = 88/281 (31%), Gaps = 36/281 (12%) Query: 2 NLMKEDYSFFVPDKQKNDQPKNKEEQLF---------FSFPRCLGISRDDLLVHSAI--- 49 N + +D + + +P + Q S + + + Sbjct: 89 NHLSQDLEQDTVEDISSQRPTARANQSPTVLDTVPQDLDSQLDPHKSFSNYVEGDSNKLP 148 Query: 50 -EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID-- 106 + + + + + + GPSG GK+ L N +++ + + L Sbjct: 149 RSIGLSIAEHPNTTQFNPMFIYGPSGCGKTHLVNAIGLRAKQLYPQKRVLYVSARLFQVQ 208 Query: 107 ------------------TRKPVLLEDID---LLDFNDTQLFHIINSIHQYDSSLLMTAR 145 T ++++DI FHI N + + +++ + Sbjct: 209 YTDSVRQNTTNDFINFYQTIDILIVDDIQEWVTATKTQDTFFHIFNHLFRNGKRIILASD 268 Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 PV L +R + ++ P+ ++ + I + + +I + Sbjct: 269 RPPVDLKGMNDRLLTRFSCGLIAELEKPNVQLCVDILHSKIKRDGLNIPEDVVRFIAETA 328 Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 S+ + +++ + ++ I LA V+K + D Sbjct: 329 NGSVRDLQGVINSLLAYSVVYNSNIDMRLAERVIKRAVKID 369 >gi|160941462|ref|ZP_02088797.1| hypothetical protein CLOBOL_06353 [Clostridium bolteae ATCC BAA-613] gi|158435608|gb|EDP13375.1| hypothetical protein CLOBOL_06353 [Clostridium bolteae ATCC BAA-613] Length = 456 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 42/236 (17%), Positives = 84/236 (35%), Gaps = 29/236 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRLID---SWPSWPSRVVILVGPSGSGKSCLANIWSD----- 86 + D +V A P + + G G GK+ L + + Sbjct: 117 NPKYTFDTFVVGGNNNLAHAAALAVAESPGEIYNPLFIYGGVGLGKTHLMHAIAHFILKN 176 Query: 87 KSRSTRFSNIAKSLDSILIDT------------------RKPVLLEDIDLLDFND---TQ 125 ++S +++ + LID +L++DI + + + Sbjct: 177 NAKSKILYVTSETFTNELIDAIRNKNNITTTEFREKYRNNDVLLIDDIQFIIGKESTQEE 236 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 FH N++++ +++++ P L SR + V I PD + ++ K Sbjct: 237 FFHTFNTLYESKKQIIISSDKPPKEIETLEERLRSRFEWGLTVDIQSPDYETRMAILRKK 296 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ID ++ YI ++ ++ E + K+ L+ IT LA E LK+ Sbjct: 297 EEMEGYNIDNEVIKYIATNIKSNIRELEGALTKIVALSRLNKCDITLELAEEALKD 352 >gi|300934349|ref|ZP_07149605.1| chromosomal replication initiation protein [Corynebacterium resistens DSM 45100] Length = 584 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 32/207 (15%), Positives = 77/207 (37%), Gaps = 26/207 (12%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTR-- 92 + + ++ S+ A + P++ + + G SG GK+ L + ++ R Sbjct: 250 YTFETFVIGSSNNFANAACRAVAESPAKAYNPLFIWGESGLGKTHLLHAIGHYAKELRPN 309 Query: 93 ---------------FSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFHIIN 131 ++IA + V +++DI L+ + + FH N Sbjct: 310 MRVRYVSSEELTNDFINSIATDTREAFKRRYRNVDMLIVDDIQFLEGKESTQEEFFHTFN 369 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 ++HQ + +++++ P L +R + ++ PD + ++ K I Sbjct: 370 ALHQANKQIVLSSDRPPKKLTTLEDRLRTRFEGGLTTDVTSPDLETRIAILSKKAQLEGI 429 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDK 218 + + + I R + S+ E + + Sbjct: 430 QLPEDVKQLIANRYDTSIRVLEGALIR 456 >gi|330994264|ref|ZP_08318192.1| Chromosomal replication initiator protein dnaA [Gluconacetobacter sp. SXCC-1] gi|329758731|gb|EGG75247.1| Chromosomal replication initiator protein dnaA [Gluconacetobacter sp. SXCC-1] Length = 476 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 40/253 (15%), Positives = 87/253 (34%), Gaps = 26/253 (10%) Query: 19 DQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSG 74 ++P+ E + + P + D +V E A PS + L G G Sbjct: 126 EEPRPAEVRTDLAAPLDQRFTFDTFVVGKPNEFAYACARRVAEQPSSPGFNPLFLYGGVG 185 Query: 75 SGKSCLAN-IWSDKSRSTRFSNIAKSLDSILIDTRKPV------------------LLED 115 GK+ L + I ++ R R S S + + + +++D Sbjct: 186 LGKTHLMHSIGAELVREGRVSVAYMSAEKFMYRFIAAIRSQSTMEFKEQLRSVDVLMIDD 245 Query: 116 IDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 + L D + FH N++ ++++A P L +RL V I Sbjct: 246 LQFLIGKDNTQEEFFHTFNALVDAGRQIVVSADKSPSDLSGLEDRLRTRLGCGMVADIHA 305 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232 + ++ + + K+ ++ ++ ++ E ++++ A G +T Sbjct: 306 TTFELRISILEAKATASGVVVPAKVLEFLAHKITSNVRELEGALNRLIAHANLFGRPVTL 365 Query: 233 SLAAEVLKETQQC 245 +VL + + Sbjct: 366 EATQDVLHDILKA 378 >gi|254186619|ref|ZP_04893136.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei Pasteur 52237] gi|157934304|gb|EDO89974.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei Pasteur 52237] Length = 533 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 85/234 (36%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87 ++ D+ + A + A P + L G G GK+ L + ++ Sbjct: 199 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 258 Query: 88 --SRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128 R+ + + + ++ + +L++DI + F+ Sbjct: 259 KPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 318 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + +++T+ T+P L SR + V I P+ + ++++ Sbjct: 319 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 378 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + +A ++ + + ++ E + K+ + G IT L E LK+ Sbjct: 379 EGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDL 432 >gi|53717714|ref|YP_106700.1| chromosomal replication initiation protein [Burkholderia pseudomallei K96243] gi|76810636|ref|YP_331717.1| chromosomal replication initiation protein [Burkholderia pseudomallei 1710b] gi|126441420|ref|YP_001057144.1| chromosomal replication initiation protein [Burkholderia pseudomallei 668] gi|254259753|ref|ZP_04950807.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei 1710a] gi|61212530|sp|Q63YW5|DNAA_BURPS RecName: Full=Chromosomal replication initiator protein DnaA gi|123771937|sp|Q3JXI6|DNAA_BURP1 RecName: Full=Chromosomal replication initiator protein DnaA gi|166201868|sp|A3N473|DNAA_BURP6 RecName: Full=Chromosomal replication initiator protein DnaA gi|52208128|emb|CAH34058.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei K96243] gi|76580089|gb|ABA49564.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei 1710b] gi|126220913|gb|ABN84419.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei 668] gi|254218442|gb|EET07826.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei 1710a] Length = 533 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 85/234 (36%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87 ++ D+ + A + A P + L G G GK+ L + ++ Sbjct: 199 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 258 Query: 88 --SRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128 R+ + + + ++ + +L++DI + F+ Sbjct: 259 KPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 318 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + +++T+ T+P L SR + V I P+ + ++++ Sbjct: 319 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 378 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + +A ++ + + ++ E + K+ + G IT L E LK+ Sbjct: 379 EGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDL 432 >gi|90408442|ref|ZP_01216602.1| chromosomal replication initiation protein [Psychromonas sp. CNPT3] gi|90310426|gb|EAS38551.1| chromosomal replication initiation protein [Psychromonas sp. CNPT3] Length = 386 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 34/233 (14%), Positives = 80/233 (34%), Gaps = 27/233 (11%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLAN------IWSDK 87 + D+ + + A+ P + L G GK+ L + + ++ Sbjct: 53 KYTFDNFVEGKSNNFAIATTQQIAENPGDVYNPLFLYAHPGLGKTHLLHAVGNAIVAANP 112 Query: 88 SRSTRFSNIAKSLDSIL--------------IDTRKPVLLEDIDLLDF---NDTQLFHII 130 + + + ++ + +L++DI + LF Sbjct: 113 ESKVVYIRSERFVQDMINSIRNNTIEQFKEYYASLDALLIDDIHFFAGKDRSQEVLFQTF 172 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 NS+ +++T+ FP L +R + I P+ + +++ +R Sbjct: 173 NSMLDAHQQVILTSDRFPKEIEGIDERLRTRFGWGLSIPIDPPELETRVAILITKAEERG 232 Query: 191 IFIDKKLAAYIVQRME-RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + +A +I +R+ + E + + A G IT SL + L++ Sbjct: 233 LVLPDDVAFFIAKRLTITDVRVLEGAIANISAKAQFTGQDITISLVQDALRDM 285 >gi|325106587|ref|YP_004267655.1| Chromosomal replication initiator protein dnaA [Planctomyces brasiliensis DSM 5305] gi|324966855|gb|ADY57633.1| Chromosomal replication initiator protein dnaA [Planctomyces brasiliensis DSM 5305] Length = 568 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 48/260 (18%), Positives = 89/260 (34%), Gaps = 40/260 (15%) Query: 13 PDKQKNDQP--KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVV 67 P QK P + + QL DD + A+ + + P + Sbjct: 212 PGGQKAKLPPRRRRFAQL------------DDFVAEENNHVALSMARVVAQEPGENYNPL 259 Query: 68 ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID--------------------T 107 G G+GK+ L ++R + L + + Sbjct: 260 YFYGGVGTGKTHLLEGIHSETRQLYPELMVMYLTAEAFANYYTKALREKSLPSFRRRFRS 319 Query: 108 RKPVLLEDIDLLD---FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164 +L++D+D LD + H I + Y +++ A P DLCSR A Sbjct: 320 IDVLLVDDVDFLDSKKGIQEEFCHTIQELLAYRRQIVLAADRHPRMLTNIRQDLCSRFLA 379 Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 V ++ PD+ ++++ + + I + YI ++ RS V+ + Sbjct: 380 GLVTRLEAPDEQSRQEIVRQQAKKVGLPISPEAVDYISRKFTRSARELLGAVNCLQTYHH 439 Query: 225 SRGMGITRSLAAEVLKETQQ 244 G I + EVLK+ ++ Sbjct: 440 LTGRAIGVTATREVLKDLER 459 >gi|115372312|ref|ZP_01459622.1| chromosomal replication initiator protein DnaA [Stigmatella aurantiaca DW4/3-1] gi|115370777|gb|EAU69702.1| chromosomal replication initiator protein DnaA [Stigmatella aurantiaca DW4/3-1] Length = 388 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 39/236 (16%), Positives = 91/236 (38%), Gaps = 31/236 (13%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLAN-----IWSD 86 + +V + + + P + + G +G GK+ L + IW + Sbjct: 54 SPRFTFGTFVVADSNQLPAAAAAAVADKPGHHYNPLYIYGGTGLGKTHLLHAVGNLIW-E 112 Query: 87 KSRSTRFSNIAKS-----------------LDSILIDTRKPVLLEDIDLLDFNDT---QL 126 ++ + R ++ D +L++DI L + + Sbjct: 113 RNPAQRVVYLSSEQFTNEYVESVREHRMTEFRRKFRDECDVLLIDDIQFLGKREETQKEF 172 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 F+ N++++ + ++++T+ T P L SR + I P + ++ K Sbjct: 173 FYTFNTLYEQNKAIVLTSDTVPSEIPGLEDRLRSRFAMGLLTDIREPSYETRVAILQKKA 232 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN-LALSRGMGITRSLAAEVLKE 241 + + +A +I + +++++ E + K+ +LSR +T AA+VLK+ Sbjct: 233 EAEGLGLPDDVAHFIAKHIQKNVRELEGALVKLSAIHSLSRL-PVTVEFAAQVLKD 287 >gi|83814277|ref|YP_445493.1| chromosomal replication initiator protein DnaA [Salinibacter ruber DSM 13855] gi|83755671|gb|ABC43784.1| chromosomal replication initiator protein DnaA [Salinibacter ruber DSM 13855] Length = 564 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 79/234 (33%), Gaps = 27/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV----VILVGPSGSGKSCLANIWS----D 86 + D+ + A + P +++ G G GK+ LA + + Sbjct: 222 RPEYTFDEFVEGDGNRLARSAAFAVAQEPGSTNYNPLLVYGGVGLGKTHLAQAVANYALE 281 Query: 87 KSRSTRF---------SNIAKSLDSILIDT-------RKPVLLEDIDLLDFND---TQLF 127 + + R S +S+ I ++++D+ + + F Sbjct: 282 HNTAERVLYVSSDRFTSQFVQSVRENRIAAFSSYYRQADLLIVDDVQFFGEKEKTQEEFF 341 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 HI N +HQ + + A P L SR + I PD + ++ + A Sbjct: 342 HIFNDLHQNGKQIFLCADRPPAEIPGIEERLLSRFQWGLSADIQRPDLETRIAILQRKAA 401 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I + + I QR++ ++ E + ++ L + A L+E Sbjct: 402 RQDIAVSPDVLELIAQRIDSNVRQLEGALTRLTALVQLDDRTLDLDTARRFLRE 455 >gi|148653240|ref|YP_001280333.1| DNA replication initiation ATPase-like protein [Psychrobacter sp. PRwf-1] gi|148572324|gb|ABQ94383.1| regulatory inactivation of DnaA Hda protein [Psychrobacter sp. PRwf-1] Length = 270 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 31/206 (15%), Positives = 75/206 (36%), Gaps = 14/206 (6%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL + S D + + + + G + +GK+ L + + Sbjct: 4 QLSLNLEVRKDASLSDFA-GPGWSTLIDAVRQMHVGLIGQMYIFGSAATGKTHLLSAICE 62 Query: 87 KSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLFHIINSIH 134 S I SL +L +++ V ++D++ + + +FH+IN Sbjct: 63 SYMEMDKSAICLSLKELLHTDVAVLASLESFDLVAIDDLEAIKDSREWQEAIFHLINRSR 122 Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL-PDDDFLEKVIVKMFADRQIFI 193 + L+ A+T LPDL +RL + ++ D + ++ + R Sbjct: 123 EGRGQLIFAAKTPATELPFELPDLLTRLIQSPAFRVPEGHDIADRKAMLESIMRRRGWQF 182 Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKM 219 D ++ ++++ + +++ + Sbjct: 183 DSRITEHLLEEGPHRIGGMLDVLNVI 208 >gi|297582339|ref|YP_003698119.1| chromosomal replication initiator protein DnaA [Bacillus selenitireducens MLS10] gi|297140796|gb|ADH97553.1| chromosomal replication initiator protein DnaA [Bacillus selenitireducens MLS10] Length = 451 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 33/213 (15%), Positives = 77/213 (36%), Gaps = 30/213 (14%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWS-----D 86 + D ++ S A + P++ + + G G GK+ L + Sbjct: 116 NTKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVVDH 175 Query: 87 KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 + ++ + I++ + +L++DI L + + FH Sbjct: 176 NPDAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDILLIDDIQFLAGKEQTQEEFFH 235 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H+ +++++ P L SR + + I+ PD + ++ K Sbjct: 236 TFNALHEERKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 295 Query: 189 RQIFIDKKLAAYIVQRME---RSLV-FAEKLVD 217 + I K++ YI +++ R L ++V Sbjct: 296 ENLDIPKEVMNYIANQIDTNIRELEGALIRVVA 328 >gi|192359033|ref|YP_001980525.1| chromosomal replication initiation protein [Cellvibrio japonicus Ueda107] gi|190685198|gb|ACE82876.1| chromosomal replication initiator protein DnaA [Cellvibrio japonicus Ueda107] Length = 534 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 39/226 (17%), Positives = 75/226 (33%), Gaps = 26/226 (11%) Query: 43 LLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS 99 + + + A R + P + + G G GK+ L + + + Sbjct: 208 FVEGKSNQLGLAAARQVAENPGGAYNPLFIYGGVGLGKTHLMQAVGNAMVARNPNAKVVY 267 Query: 100 LDSILIDTR--------------------KPVLLEDIDLLDFND---TQLFHIINSIHQY 136 L S +L++DI + + FH NS+ + Sbjct: 268 LHSERFVADMVKALQLNAINDFKRYYRSMDALLIDDIQFFAGKERSQEEFFHTFNSLLEG 327 Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196 +++T FP L SR V + P+ + +++K I + + Sbjct: 328 GRQIILTCDRFPKEINGLEERLKSRFGWGLTVAVEPPELETRVAILIKKAEQANIDLPHE 387 Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 A +I QR+ ++ E + ++ A G I L E LK+ Sbjct: 388 AAFFIAQRIRANVRDLEGALKRVIASANFTGRSIDVELVREALKDL 433 >gi|146328959|ref|YP_001208941.1| chromosomal replication initiator protein [Dichelobacter nodosus VCS1703A] gi|146232429|gb|ABQ13407.1| chromosomal replication initiator protein [Dichelobacter nodosus VCS1703A] Length = 442 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 41/266 (15%), Positives = 87/266 (32%), Gaps = 36/266 (13%) Query: 9 SFFVPDKQKND-QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW----P 63 + F KQ ND P ++ +V + + A + Sbjct: 85 NLFTQRKQSNDFAPTFNSR-------LNPHYQFENFIVGKSNDNAYAAVHRVSKGLLSED 137 Query: 64 SRVVILVGPSGSGKSCLANIW----------------SDKSRSTRFSNIAKSLDSI---- 103 +++ G +G GKS L + +++ + + I + Sbjct: 138 FNPLLIYGGTGLGKSHLMHAAGNALCQNGKKRVMYLTAEEFTNDYINAIKNPKREMSDFI 197 Query: 104 -LIDTRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC 159 +L++D+ L + + FH NS+ +++T FP L Sbjct: 198 NFYRNADALLIDDVQFLSGKNRSQEEFFHTFNSLFDKKRQIILTCDRFPKEIEGLADRLK 257 Query: 160 SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 SR + V ++ PD + ++ + K++ YI +++ ++ E + K+ Sbjct: 258 SRFGSGLTVSVAPPDYETRIAILQSKAERLHFSLPKEVEEYIAEKVTSNIRDLEGALRKV 317 Query: 220 DNLALSRGMGITRSLAAEVLKETQQC 245 IT +A L + Q Sbjct: 318 YAYCEFNHEIITLDIARNALNDLIQA 343 >gi|29653365|ref|NP_819057.1| chromosomal replication initiation protein [Coxiella burnetii RSA 493] gi|154706441|ref|YP_001423440.1| chromosomal replication initiation protein [Coxiella burnetii Dugway 5J108-111] gi|161830473|ref|YP_001595901.1| chromosomal replication initiation protein [Coxiella burnetii RSA 331] gi|164685862|ref|ZP_01947694.2| chromosomal replication initiator protein DnaA [Coxiella burnetii 'MSU Goat Q177'] gi|165924211|ref|ZP_02220043.1| chromosomal replication initiator protein DnaA [Coxiella burnetii RSA 334] gi|212211670|ref|YP_002302606.1| chromosomal replication initiation protein [Coxiella burnetii CbuG_Q212] gi|212217689|ref|YP_002304476.1| chromosomal replication initiation protein [Coxiella burnetii CbuK_Q154] gi|38257444|sp|Q83FD8|DNAA_COXBU RecName: Full=Chromosomal replication initiator protein DnaA gi|189044636|sp|A9KEU8|DNAA_COXBN RecName: Full=Chromosomal replication initiator protein DnaA gi|189044637|sp|A9N900|DNAA_COXBR RecName: Full=Chromosomal replication initiator protein DnaA gi|226735796|sp|B6J8S3|DNAA_COXB1 RecName: Full=Chromosomal replication initiator protein DnaA gi|226735797|sp|B6J287|DNAA_COXB2 RecName: Full=Chromosomal replication initiator protein DnaA gi|29540627|gb|AAO89571.1| chromosomal replication initiator protein [Coxiella burnetii RSA 493] gi|154355727|gb|ABS77189.1| chromosomal replication initiator protein [Coxiella burnetii Dugway 5J108-111] gi|161762340|gb|ABX77982.1| chromosomal replication initiator protein DnaA [Coxiella burnetii RSA 331] gi|164601379|gb|EAX31682.2| chromosomal replication initiator protein DnaA [Coxiella burnetii 'MSU Goat Q177'] gi|165916345|gb|EDR34949.1| chromosomal replication initiator protein DnaA [Coxiella burnetii RSA 334] gi|212010080|gb|ACJ17461.1| chromosomal replication initiator protein [Coxiella burnetii CbuG_Q212] gi|212011951|gb|ACJ19331.1| chromosomal replication initiator protein [Coxiella burnetii CbuK_Q154] Length = 451 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 80/231 (34%), Gaps = 26/231 (11%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI----------- 83 + D + + + A P + + + G G GK+ L + Sbjct: 120 FTFDSFVEGKSNQLARAAATQVAENPGQAYNPLFIYGGVGLGKTHLMHAVGNAILRKDSS 179 Query: 84 ------WSDKSRSTRFSNIAKSLDSI---LIDTRKPVLLEDIDLLDF---NDTQLFHIIN 131 S++ + + + + + +L++DI + + FH N Sbjct: 180 KKVLYLHSERFVADMIKALQHNAMNEFKRFYRSLNALLIDDIQFFAGKDRSQEEFFHTFN 239 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 ++ +++T +P L SR V I P+ + +++ ++ Sbjct: 240 ALLDGQQQIILTCDRYPKEINGLEERLQSRFGWGLTVAIEPPELETRVAILMSKAEQLKV 299 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + ++A +I + ++ ++ E + ++ A G IT E LK+ Sbjct: 300 HLPHEVAFFIAKHIQSNVRELEGALKRVIANAHFTGQSITVDFTREALKDL 350 >gi|297564485|ref|YP_003683457.1| chromosomal replication initiator protein DnaA [Meiothermus silvanus DSM 9946] gi|296848934|gb|ADH61949.1| chromosomal replication initiator protein DnaA [Meiothermus silvanus DSM 9946] Length = 439 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 39/261 (14%), Positives = 94/261 (36%), Gaps = 29/261 (11%) Query: 11 FVPDKQKNDQPKNKEEQLFFSFPR---CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV- 66 VP + + Q PR + ++ +V A + P + Sbjct: 79 VVPGNPVQEDIFSAPVQAPAPDPRSRLNPKYTFENFVVGQNNRLAHAAAMAVAESPGKAY 138 Query: 67 --VILVGPSGSGKSCLANIWSDKSRST-----------------RFSNIAKSLDSILIDT 107 + + G G GK+ L + + + I + + + Sbjct: 139 NPLFIYGGVGLGKTHLMHAVGHSVAARFPSLRIEYVSTETFTNELINAIREDRMTEFRER 198 Query: 108 RKPV---LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161 + V L++DI + + + FH N++++ +++++ P L SR Sbjct: 199 YRSVDLLLVDDIQFVAGKERTQEEFFHTFNALYEAHKQIILSSDRPPKDILTLEARLRSR 258 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 + + I P+ + ++ R + I +++ YI +++ ++ E + ++ Sbjct: 259 FEWGLITDIQPPELETRIAILKMNSEYRSMRIPEEVLEYIARQVTSNIRELEGALMRVIA 318 Query: 222 LALSRGMGITRSLAAEVLKET 242 A G+ IT+++AA L + Sbjct: 319 YASLNGVEITKNVAARALSDV 339 >gi|302346167|ref|YP_003814465.1| chromosomal replication initiator protein DnaA [Prevotella melaninogenica ATCC 25845] gi|302150481|gb|ADK96742.1| chromosomal replication initiator protein DnaA [Prevotella melaninogenica ATCC 25845] Length = 468 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 36/281 (12%), Positives = 88/281 (31%), Gaps = 36/281 (12%) Query: 2 NLMKEDYSFFVPDKQKNDQPKNKEEQLF---------FSFPRCLGISRDDLLVHSAI--- 49 N + +D + + +P + Q S + + + Sbjct: 89 NHLSQDLEQDTVEDISSQRPTARANQSPTVLDTVPQDLDSQLDPHKSFSNYVEGDSNKLP 148 Query: 50 -EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID-- 106 + + + + + + GPSG GK+ L N K++ + + L Sbjct: 149 RSIGLSIAEHPNTTQFNPMFIYGPSGCGKTHLVNAIGLKAKQLYPQKRVLYVSARLFQVQ 208 Query: 107 ------------------TRKPVLLEDID---LLDFNDTQLFHIINSIHQYDSSLLMTAR 145 T ++++DI FHI N + + +++ + Sbjct: 209 YTDSVRQNTTNDFINFYQTIDILIVDDIQEWVTATKTQDTFFHIFNHLFRNGKRIILASD 268 Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 PV L +R + ++ P+ ++ + I + + +I + Sbjct: 269 RPPVDLKGMNDRLLTRFSCGLIAELEKPNVQLCVDILHSKIKRDGLNIPEDVVRFIAETA 328 Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 S+ + +++ + ++ I LA V+K + D Sbjct: 329 NGSVRDLQGVINSLLAYSVVYNSNIDMRLAERVIKRAVKID 369 >gi|297622253|ref|YP_003703687.1| chromosomal replication initiator protein DnaA [Truepera radiovictrix DSM 17093] gi|297163433|gb|ADI13144.1| chromosomal replication initiator protein DnaA [Truepera radiovictrix DSM 17093] Length = 444 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 32/237 (13%), Positives = 78/237 (32%), Gaps = 26/237 (10%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91 + +V A + P R + + G +G GK+ L + Sbjct: 111 NPKYVFSNFVVGPNNNLASAAALAVAEAPGRAYNPLFIYGDAGLGKTHLMHAVGHAVAER 170 Query: 92 R-----------------FSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128 + I + + D + V L++D+ + + + FH Sbjct: 171 LPQLYIEYVTTEAFTNDLINAIREDRMTAFRDRYRSVDVLLVDDVQFIAGKERTQEEFFH 230 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++++ +++++ P L SR + + I P+ + ++ Sbjct: 231 TFNALYESGKQIILSSDRPPKDIPTLENRLRSRFEWGLITDIQAPELETRIAILKMNAEY 290 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 R + I + YI +++ ++ E + ++ A + + R A L + Sbjct: 291 RGVKIPPDVIDYIARQVTSNIRELEGALVRVILYASMNQVELNRQTVAAALSDVYAP 347 >gi|886325|gb|AAB53141.1| chromosomal replication initiator protein [Mycobacterium leprae] Length = 521 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 35/233 (15%), Positives = 87/233 (37%), Gaps = 28/233 (12%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRF 93 + + ++ ++ A R + P+R + + G SG GK+ L + + F Sbjct: 185 RYTFETFVIGASNRFAHRAALAIAEAPARAYNPLFIWGESGLGKTHLLHA-AGNYAQRLF 243 Query: 94 SNI---AKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFHI 129 + S + D + L++DI ++ + + FH Sbjct: 244 PGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHT 303 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N++H + +++++ P L +R + + + P+ + ++ K Sbjct: 304 FNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQME 363 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ + + I +ER++ E + ++ A I ++LA VL++ Sbjct: 364 RLAVPGDVLELIASSIERNIRELEGALIRVTAFASLNKTAIDKALAEIVLRDL 416 >gi|329116547|ref|ZP_08245264.1| chromosomal replication initiator protein DnaA [Streptococcus parauberis NCFD 2020] gi|326906952|gb|EGE53866.1| chromosomal replication initiator protein DnaA [Streptococcus parauberis NCFD 2020] Length = 453 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 38/242 (15%), Positives = 78/242 (32%), Gaps = 35/242 (14%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91 D+ + AV + + P + + G G GK+ L N + Sbjct: 114 NPKYGFDNFIQGDENRWAVAASIAVANTPGSTYNPLFIWGGPGLGKTHLLNAIGNSVLQD 173 Query: 92 RFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLD-----FNDTQL 126 K + + + +L++DI L + Sbjct: 174 NPHARVKYISAENFINEFVTHIRLDKMDELKEVFRNLDLLLIDDIQSLAKKTLAVTQEEF 233 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 F+ N++H + +++T+ P L +R K V I+ PD + ++ Sbjct: 234 FNTFNALHNNNKQIVLTSDRTPDHLNDLEERLVTRFKWGLTVNITPPDFETRVAILTNKI 293 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG----ITRSLAAEVLKET 242 D + Y+ + + S+ E + + +L I+ LAAE ++ Sbjct: 294 QDYSFTFPQSTIEYLAGQFDSSVRDLEGALKDI---SLVANFKQIDVISVELAAEAIRAR 350 Query: 243 QQ 244 +Q Sbjct: 351 KQ 352 >gi|91781385|ref|YP_556591.1| chromosomal replication initiation protein [Burkholderia xenovorans LB400] gi|123359273|sp|Q147F0|DNAA_BURXL RecName: Full=Chromosomal replication initiator protein DnaA gi|91685339|gb|ABE28539.1| chromosomal replication initiator protein DnaA [Burkholderia xenovorans LB400] Length = 544 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 88/234 (37%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIW-----SD 86 ++ D+ + A + A P + L G G GK+ L + D Sbjct: 210 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLMD 269 Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128 K+ + A+ S ++ + +D +DLL +D + F+ Sbjct: 270 KAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 329 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + +++T+ T+P L SR + V I P+ + ++++ Sbjct: 330 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 389 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + +++ +A ++ + + ++ E + K+ + G IT + E LK+ Sbjct: 390 EFVSLNEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIEVTKEALKDL 443 >gi|226193147|ref|ZP_03788757.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei Pakistan 9] gi|225934747|gb|EEH30724.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei Pakistan 9] Length = 506 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 85/234 (36%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87 ++ D+ + A + A P + L G G GK+ L + ++ Sbjct: 172 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 231 Query: 88 --SRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128 R+ + + + ++ + +L++DI + F+ Sbjct: 232 KPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 291 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + +++T+ T+P L SR + V I P+ + ++++ Sbjct: 292 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 351 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + +A ++ + + ++ E + K+ + G IT L E LK+ Sbjct: 352 EGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDL 405 >gi|224477956|ref|YP_002635562.1| chromosomal replication initiation protein [Staphylococcus carnosus subsp. carnosus TM300] gi|254777913|sp|B9DPX4|DNAA_STACT RecName: Full=Chromosomal replication initiator protein DnaA gi|222422563|emb|CAL29377.1| chromosomal replication initiator protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 453 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 39/233 (16%), Positives = 86/233 (36%), Gaps = 28/233 (12%) Query: 40 RDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS-----RST 91 + ++ A + P+ + + G G GK+ L + + Sbjct: 122 FETFVIGPGNRFPHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVLENNRDAK 181 Query: 92 RFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINSI 133 ++ + I + + +L++DI + + + FH N + Sbjct: 182 VIYTSSEKFTNEFIKSIRDNETEQFREKYRNIDVLLIDDIQFIQNKEQTQEEFFHTFNDL 241 Query: 134 HQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 HQ +++++ P L D L SR + +V I+ PD + ++ K + + Sbjct: 242 HQTGKQIVISSDRPPKEIA-KLEDRLRSRFEWGLIVDITPPDYETRMAILQKKLEEEDVD 300 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 I + YI +++ ++ E + ++ + + IT L AE LK+ Q Sbjct: 301 IPLESLTYIANQIQSNIRELEGALTRVIAYSRLQNEAITTELTAEALKDIIQT 353 >gi|300726801|ref|ZP_07060231.1| chromosomal replication initiator protein DnaA [Prevotella bryantii B14] gi|299775914|gb|EFI72494.1| chromosomal replication initiator protein DnaA [Prevotella bryantii B14] Length = 469 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 40/261 (15%), Positives = 86/261 (32%), Gaps = 33/261 (12%) Query: 13 PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVI 68 P +P++ L ++ D+ L + V + + + Sbjct: 116 PSVSDAAKPQDIPSHL------NNRLTFDNYLEGESNKLTRTVGVSIAEHPYNSQFNPFF 169 Query: 69 LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID-TRKPVLLED-----------I 116 + GPSG GK+ L N K + + + + L +LE+ I Sbjct: 170 IYGPSGCGKTHLVNAIGLKIKKLYPDSRVLYISAKLFSVQYTQAVLENHTNDFIAFYQTI 229 Query: 117 DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 D L +D FHI N + + + +++ PVS + +R Sbjct: 230 DTLIIDDVQEWMGKTKTLETFFHIFNHLFRNNKRIILACDRPPVSLTGMPDRMLTRFSCG 289 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 + ++ P+ ++ + I + YI Q S+ + ++++ ++ Sbjct: 290 LIAEMEKPNVQLCIDIMKHKMRRDGLDIHDDVLTYIAQNANCSVRDLQGTINQLLAYSIV 349 Query: 226 RGMGITRSLAAEVLKETQQCD 246 I LA ++ + D Sbjct: 350 YNSKIDIKLAKRCIERAVKVD 370 >gi|294675558|ref|YP_003576173.1| chromosomal replication initiator protein DnaA [Rhodobacter capsulatus SB 1003] gi|294474378|gb|ADE83766.1| chromosomal replication initiator protein DnaA [Rhodobacter capsulatus SB 1003] Length = 457 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 36/244 (14%), Positives = 81/244 (33%), Gaps = 31/244 (12%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSD--K 87 P + D +V E A + L G G GK+ L + + + Sbjct: 116 PLDARFTFDSFVVGKPNELAHAAARRVAEGGPVTFNPLFLYGGVGLGKTHLMHAIAHELQ 175 Query: 88 SRSTRFSNIAKSLDS------------------ILIDTRKPVLLEDIDLLDFND---TQL 126 ++ + S + L + ++++D+ + D + Sbjct: 176 TQHGELRVLYLSAEQFMYRFVQALRDRQIMDFKELFRSVDVLMVDDVQFIAGKDSTQEEF 235 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV--- 183 FH N++ ++++A P + SRL+ VV + D + ++ Sbjct: 236 FHTFNALVDQGKQIVISADRAPGEIKDLEDRIKSRLQCGLVVDLHPTDYELRLGILQTKT 295 Query: 184 --KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + + + + ++ R+ ++ E + ++ A G IT LA E L + Sbjct: 296 EIHAARNPGLVVASGVLEFLAHRITTNVRVLEGALTRLFAFASLVGREITLDLAQECLAD 355 Query: 242 TQQC 245 + Sbjct: 356 ILRA 359 >gi|257461143|ref|ZP_05626241.1| chromosomal replication initiator protein DnaA [Campylobacter gracilis RM3268] gi|257441517|gb|EEV16662.1| chromosomal replication initiator protein DnaA [Campylobacter gracilis RM3268] Length = 442 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 83/232 (35%), Gaps = 24/232 (10%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLAN---IWSDKS 88 + ++ ++ + + A S P + + GPSG GK+ L + K Sbjct: 104 SENYNFENFIIGDSNKFAFECSVSVAKEPGIRFNPLFIYGPSGLGKTHLLQSIGNYCIKK 163 Query: 89 RSTRFSNIAKSL--DSILIDTRKPV-------------LLEDIDLL---DFNDTQLFHII 130 T ++ D + + L++DI L D +LF+ Sbjct: 164 GKTVICVTSEQFANDFVFNLKNNSIDKFKQKYRNCDVLLIDDIQFLIGRDKAQEELFYTF 223 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N + + +++T P L +R ++ + I+ P+ + +I K + + Sbjct: 224 NELKDKNCQIVLTNDLPPKFLKGFENRLTTRFESGIIANITPPNLETKIAIINKKSEENR 283 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + YI M ++ E ++K++ + IT L++ Sbjct: 284 VRIPHDVVEYIAANMGDNIREIEGAINKLNAYSSILRTKITLEFTKSTLQDQ 335 >gi|281414964|ref|ZP_06246706.1| chromosomal replication initiator protein DnaA [Micrococcus luteus NCTC 2665] Length = 420 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 81/232 (34%), Gaps = 26/232 (11%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS--- 90 + ++ S+ A ++ + + G SG GK+ L + +R Sbjct: 82 RYHFETFVIGSSNRFAHAAANAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYP 141 Query: 91 ---TRFSNIAKSLDSILIDTR--------------KPVLLEDIDLLDFND---TQLFHII 130 R+ N + + + R +L++DI L + + FH Sbjct: 142 GLRVRYVNSEEFTNDFINSIRHDEGASFKQVYRNVDILLIDDIQFLADKEATVEEFFHTF 201 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N+++ + +++T+ P L SR + + I PD + ++ K Sbjct: 202 NTLYNNNKQVVITSDLPPKQLSGFEDRLRSRFEWGLITDIQPPDLETRIAILRKKAEAEG 261 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + YI R+ ++ E + ++ A + LA VLK+ Sbjct: 262 LVAPPEALEYIASRISTNIRELEGALIRVTAFASLNRQTVDIELAEHVLKDL 313 >gi|268610504|ref|ZP_06144231.1| chromosomal replication initiation protein [Ruminococcus flavefaciens FD-1] Length = 457 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 41/241 (17%), Positives = 90/241 (37%), Gaps = 41/241 (17%) Query: 38 ISRDDLLVHSAIEQAVRLID---------SWPSWPSRVVILVGPSGSGKSCLANIWSDKS 88 + D + + E A+ + P + + GPSG GK+ L +++ Sbjct: 116 YTFDTFIEGRSNEFALACSKSVAKNCGEKAVPD--YNPLFIYGPSGMGKTHLITAIANEV 173 Query: 89 -----------------RSTRFSNIAKS--LDSILIDTRKP--VLLEDIDLLDFND---T 124 + + + +D R +L++DI + Sbjct: 174 RKNHPDFNIVYVTSEAFGGELINALNNTGNIDDFHAKYRNADILLIDDIQFFSGKERMQE 233 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + FH ++HQ +++T+ P L +R + + IS PD + +I + Sbjct: 234 EFFHTFYTLHQEGRQIVITSDKPPKELLTLEERLRTRFEGGLIADISAPDYETRLAIINR 293 Query: 185 MFADRQIFIDKKLAAYIVQRME---RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++ + ++A ++ R++ R L A + +++ A G IT S+A V+++ Sbjct: 294 KSELLELKMPSEVAEFMANRLKSNIRQLEGAVVRLKALNHFA---GSPITISMAQSVIRD 350 Query: 242 T 242 Sbjct: 351 V 351 >gi|260584257|ref|ZP_05852004.1| DNA replication initiator protein, ATPase [Granulicatella elegans ATCC 700633] gi|260157775|gb|EEW92844.1| DNA replication initiator protein, ATPase [Granulicatella elegans ATCC 700633] Length = 455 Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 85/233 (36%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS--- 88 + D ++ + A + P + G G GK+ L ++ Sbjct: 121 NPKYTFDSFIIGKGNQMAHAAALVVCERPGQLYNPLFFYGGVGLGKTHLMQAIGNQYKLL 180 Query: 89 --RSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 + +++ + +I + + +L++DI + + FH Sbjct: 181 NPNARVKYVTSEAFTNEMITSLRTNTQQEFRDYYRNVDLLLVDDIQFFAEKEATQEEFFH 240 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++ +++T+ P L SR + V I+ PD + ++ K Sbjct: 241 TFNALFNNQKQIVLTSDRQPTEIKALQERLVSRFVSGLPVDITPPDLETRIAILSKKAEA 300 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 I I +YI +++ ++ E + ++ +++ G IT +LAAE L+ Sbjct: 301 VGIDIPTDTLSYIAGQIQSNVRELEGALVRVQAYSVTHGEDITTNLAAEALQN 353 >gi|149375636|ref|ZP_01893405.1| chromosomal replication initiation protein [Marinobacter algicola DG893] gi|149360038|gb|EDM48493.1| chromosomal replication initiation protein [Marinobacter algicola DG893] Length = 445 Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats. Identities = 38/236 (16%), Positives = 81/236 (34%), Gaps = 30/236 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW------- 84 G + D + + + A + P + L G G GK+ L + Sbjct: 111 NEGFTFDTFVEGKSNQLARAASMQVAENPGGAYNPLFLYGGVGLGKTHLMHAIGNDIVRR 170 Query: 85 ---------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQL 126 +D ++ + + I + + +L++DI + + Sbjct: 171 NPRAKVAYLRSERFVADMVKALQLNAINEFKR--YYRSVDALLIDDIQFFARKERSQEEF 228 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH N++ + +++T FP L SR V + P+ + +++K Sbjct: 229 FHTFNALLEGGQQVIVTCDRFPKEIVDMEERLKSRFGWGLTVMVEPPELETRVAILMKKA 288 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + A +I Q++ ++ E + + A G IT E LK+ Sbjct: 289 EQVNVKLSSEAAFFIAQKIRSNVRELEGALRLVIANAHFTGSEITPPFIRESLKDL 344 >gi|113473943|ref|YP_720004.1| chromosomal replication initiation protein [Trichodesmium erythraeum IMS101] gi|122965345|sp|Q11AE3|DNAA_TRIEI RecName: Full=Chromosomal replication initiator protein DnaA gi|110164991|gb|ABG49531.1| chromosomal replication initiator protein DnaA [Trichodesmium erythraeum IMS101] Length = 456 Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats. Identities = 40/242 (16%), Positives = 79/242 (32%), Gaps = 28/242 (11%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLA 81 + L + SR +V A + P + L G G GK+ L Sbjct: 112 PKPLPANLNAKYMFSR--FVVGPNNRMAHAASLAVAESPGQEFNPLFLCGGVGLGKTHLM 169 Query: 82 NIWSD-------KSRSTRFSNIAKSLDSILI-------------DTRKPVLLEDIDLLDF 121 S+ S + D I +L++DI ++ Sbjct: 170 QAIGHYRLDIFPHSQIFYVSTEKFTNDLIAAIRKDSLQGFREHYRAADVLLVDDIQFIEG 229 Query: 122 ND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178 + + FH N++H+ +++ + P LCSR + I PD + Sbjct: 230 KEYTQEEFFHTFNTLHEAGKQVVLASDRPPNQIPSLQERLCSRFSMGLIADIQAPDLETR 289 Query: 179 EKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238 +++K + + + + YI R ++ E + ++ G+ +T A + Sbjct: 290 MAILLKKSEYENMVLPRDVIEYIATRYPSNIRELEGALTRVVTYISISGLPMTVENIAPI 349 Query: 239 LK 240 L Sbjct: 350 LN 351 >gi|293380891|ref|ZP_06626927.1| chromosomal replication initiator protein DnaA [Lactobacillus crispatus 214-1] gi|290922564|gb|EFD99530.1| chromosomal replication initiator protein DnaA [Lactobacillus crispatus 214-1] Length = 455 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 41/259 (15%), Positives = 88/259 (33%), Gaps = 29/259 (11%) Query: 10 FFVPDKQKN---DQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV 66 P ++ QP E++ + D+ + + A + P Sbjct: 92 IVTPAPKREAQVQQPNLPEKEFTKDLKLNEKYTFDNFVQGEGNKLAAGAALAVADSPGSF 151 Query: 67 ---VILVGPSGSGKSCLANI-----WSDKSRSTRFSNIAKSLDSILIDTRK--------- 109 + + G G GK+ L +++ + +++ + I++ K Sbjct: 152 YNPLFIFGGVGLGKTHLMQAVGHQMLAERPNAKVVYIQSETFVNDFINSIKNKTQDKFRE 211 Query: 110 ------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 +L++DI + + FH +++ ++MT+ P L S Sbjct: 212 KYRTCDLLLVDDIQFFAKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVS 271 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 R V+I+ PD + ++ + ID YI +++ ++ E + K+ Sbjct: 272 RFTWGLQVEITPPDLETRIAILRRKAETEGWTIDDGTLNYIASQVDTNIRELEGALVKVQ 331 Query: 221 NLALSRGMGITRSLAAEVL 239 A I +LA E L Sbjct: 332 AYATIEKADIDVNLAREAL 350 >gi|186474774|ref|YP_001856244.1| chromosomal replication initiation protein [Burkholderia phymatum STM815] gi|226735789|sp|B2JJ97|DNAA_BURP8 RecName: Full=Chromosomal replication initiator protein DnaA gi|184191233|gb|ACC69198.1| chromosomal replication initiator protein DnaA [Burkholderia phymatum STM815] Length = 518 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 86/234 (36%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87 ++ D+ + A + A P + L G G GK+ L + ++ Sbjct: 184 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLMD 243 Query: 88 --SRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128 R+ + + + ++ + +L++DI + F+ Sbjct: 244 KPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 303 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + +++T+ T+P L SR + V I P+ + ++++ Sbjct: 304 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 363 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + +++ +A ++ + + ++ E + K+ + G IT L E LK+ Sbjct: 364 EGVNLNEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDL 417 >gi|259047905|ref|ZP_05738306.1| DNA replication initiator protein, ATPase [Granulicatella adiacens ATCC 49175] gi|259035439|gb|EEW36694.1| DNA replication initiator protein, ATPase [Granulicatella adiacens ATCC 49175] Length = 456 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 36/234 (15%), Positives = 79/234 (33%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDKSR-- 89 + D ++ + A P + G G GK+ L + + Sbjct: 122 NPKYTFDTFIIGKGNQMATAAARYVAENPGTAYNPLFFYGGVGLGKTHLMQAIGNDYKKN 181 Query: 90 ---STRFSNIAKSLDSILIDTRKP---------------VLLEDIDLLDFND---TQLFH 128 + ++ + +I + +L++DI L + + FH Sbjct: 182 HPTARVKYVTSEEFMNEMIASIGSKTPQEFRNRYRNVDILLVDDIQFLAAKEATQEEFFH 241 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++ +++T+ P L SR + V I+ PD + ++ Sbjct: 242 TFNALFNNQKQIVLTSDRQPTEIKALQERLVSRFVSGLPVDITPPDLETRIAILQNKAQS 301 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 I + +Y+ ++ ++ E + ++ ++ G I+ LAAE LK Sbjct: 302 LGFNIPIDVLSYVAGHIQSNVRELEGALMRLQAYSVMVGEDISTDLAAEALKNL 355 >gi|225869488|ref|YP_002745435.1| chromosomal replication initiator protein [Streptococcus equi subsp. equi 4047] gi|254777914|sp|C0M7C0|DNAA_STRE4 RecName: Full=Chromosomal replication initiator protein DnaA gi|225698892|emb|CAW91873.1| chromosomal replication initiator protein [Streptococcus equi subsp. equi 4047] Length = 450 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 43/267 (16%), Positives = 89/267 (33%), Gaps = 40/267 (14%) Query: 15 KQKNDQPKNKEEQLFFSFPR-----CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRV 66 +Q++ + EQ F P S D+ + AV + + P Sbjct: 87 EQQHQGQQGYTEQAFQQLPAVQSDLNPKYSFDNFIQGDENRWAVAASIAVANTPGTTYNP 146 Query: 67 VILVGPSGSGKSCLANIWSDKS------------------RSTRFSNIAKSLDSILIDTR 108 + + G G GK+ L N + ++D + R Sbjct: 147 LFIWGGPGLGKTHLLNAIGNSVLLENPNARIKYITAENFINEFVVHIRLDTMDELKEKFR 206 Query: 109 KP--VLLEDIDLLD-----FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161 +L++DI L + F+ N++H + +++T+ P L +R Sbjct: 207 NLDLLLIDDIQSLAKKTLSGTQEEFFNTFNALHNNNKQIVLTSDRTPDHLNDLEDRLVTR 266 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 K V I+ PD + ++ + + Y+ + + ++ E + + Sbjct: 267 FKWGLTVNITPPDFETRVAILTNKIQEYNFIFPQDTIEYLAGQFDSNVRDLEGALKDI-- 324 Query: 222 LALSRGMG----ITRSLAAEVLKETQQ 244 +L IT +AAE ++ +Q Sbjct: 325 -SLVANFKQIDTITVDIAAEAIRARKQ 350 >gi|195977157|ref|YP_002122401.1| chromosomal replication initiation protein [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|226735849|sp|B4U5G8|DNAA_STREM RecName: Full=Chromosomal replication initiator protein DnaA gi|195973862|gb|ACG61388.1| chromosomal replication initiator protein DnaA [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 450 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 43/267 (16%), Positives = 89/267 (33%), Gaps = 40/267 (14%) Query: 15 KQKNDQPKNKEEQLFFSFPR-----CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRV 66 +Q++ + EQ F P S D+ + AV + + P Sbjct: 87 EQQHQGQQGYTEQAFQQLPAVQSDLNPKYSFDNFIQGDENRWAVAASIAVANTPGTTYNP 146 Query: 67 VILVGPSGSGKSCLANIWSDKS------------------RSTRFSNIAKSLDSILIDTR 108 + + G G GK+ L N + ++D + R Sbjct: 147 LFIWGGPGLGKTHLLNAIGNSVLLENPNARIKYITAENFINEFVVHIRLDTMDELKEKFR 206 Query: 109 KP--VLLEDIDLLD-----FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161 +L++DI L + F+ N++H + +++T+ P L +R Sbjct: 207 NLDLLLIDDIQSLAKKTLSGTQEEFFNTFNALHNNNKQIVLTSDRTPDHLNDLEDRLVTR 266 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 K V I+ PD + ++ + + Y+ + + ++ E + + Sbjct: 267 FKWGLTVNITPPDFETRVAILTNKIQEYNFIFPQDTIEYLAGQFDSNVRDLEGALKDI-- 324 Query: 222 LALSRGMG----ITRSLAAEVLKETQQ 244 +L IT +AAE ++ +Q Sbjct: 325 -SLVANFKQIDTITVDIAAEAIRARKQ 350 >gi|119509172|ref|ZP_01628323.1| chromosomal replication initiation protein [Nodularia spumigena CCY9414] gi|119466338|gb|EAW47224.1| chromosomal replication initiation protein [Nodularia spumigena CCY9414] Length = 459 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 42/273 (15%), Positives = 94/273 (34%), Gaps = 36/273 (13%) Query: 2 NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPS 61 NL + + ++ +P + + + +Q SR +V + A + Sbjct: 89 NLGESEVTWELPSQSMTAESVPQNKQPPKDLNSKYVFSR--FVVGANNRMAHAASLAVAE 146 Query: 62 WPSRV---VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLD 101 P R + L G G GK+ L +++ + + I Sbjct: 147 SPGREFNPLFLCGGVGLGKTHLMQAIGHYRSQICPDSKIFYVSTEQFTNDLITAIRNDSM 206 Query: 102 SILIDTRKP---VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 + + +L++DI ++ + + FH N++H+ +++ + P Sbjct: 207 QNFREHYRAADVLLVDDIQFIEGKEYTQEEFFHTFNTLHEAGKQVVIASDRPPHHIPQLQ 266 Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215 LCSR + + PD + ++ K I + + + YI ++ E Sbjct: 267 ERLCSRFSMGLIADVQTPDLETRMAILQKKAEYENIRLPRDVIEYIASNYTNNIRELEGA 326 Query: 216 VDKMDNLALSR----GMGITRSLAAEVLKETQQ 244 + + AL+ G+ +T VL+ + Sbjct: 327 LIR----ALAYISIWGLPMTVENITPVLERQSE 355 >gi|81251100|gb|ABB69896.1| DNA replication initiator protein [Nitrosomonas sp. IWT310] Length = 459 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 37/234 (15%), Positives = 84/234 (35%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGPSGSGKSCLANIWS------ 85 + D + A + A + P + + G G GK+ L + Sbjct: 125 NPAFTFDAFVTGKANQLARAGAIQVAERPGIAYNPLFIYGGVGLGKTHLMHAVGNYVMEL 184 Query: 86 DKSRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128 D R+ + K + ++ + +L++D+ + F+ Sbjct: 185 DAGAKIRYVHAEKYVSDVVSAYQHKSFDKFKLYYHSLDLLLVDDVQFFSGKNRTQEEFFY 244 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++ + +++T+ +P L SR V I P+ + +++K Sbjct: 245 AFNALIEAHKQVIITSDCYPKEISGLEERLVSRFGWGLTVAIEPPELEMRVAILLKKAFI 304 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +I +D+ A +I + + ++ E + ++ + G I+ LA E LK+ Sbjct: 305 EKIELDESTAFFIAKYIRSNVRELEGALKRVLAYSRFTGHPISLDLAKEALKDL 358 >gi|114330037|ref|YP_746259.1| chromosomal replication initiator protein DnaA [Nitrosomonas eutropha C91] gi|122314857|sp|Q0AK27|DNAA_NITEC RecName: Full=Chromosomal replication initiator protein DnaA gi|81251096|gb|ABB69893.1| DNA replication initiator protein [Nitrosomonas sp. CNS332] gi|114307051|gb|ABI58294.1| chromosomal replication initiator protein DnaA [Nitrosomonas eutropha C91] Length = 459 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 37/234 (15%), Positives = 84/234 (35%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGPSGSGKSCLANIWS------ 85 + D + A + A + P + + G G GK+ L + Sbjct: 125 NPAFTFDAFVTGKANQLARAGAIQVAERPGIAYNPLFIYGGVGLGKTHLMHAVGNYVMEL 184 Query: 86 DKSRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128 D R+ + K + ++ + +L++D+ + F+ Sbjct: 185 DAGAKIRYVHAEKYVSDVVSAYQHKSFDKFKLYYHSLDLLLVDDVQFFSGKNRTQEEFFY 244 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++ + +++T+ +P L SR V I P+ + +++K Sbjct: 245 AFNALIEAHKQVIITSDCYPKEISGLEERLVSRFGWGLTVAIEPPELEMRVAILLKKAFI 304 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +I +D+ A +I + + ++ E + ++ + G I+ LA E LK+ Sbjct: 305 EKIELDESTAFFIAKYIRSNVRELEGALKRVLAYSRFTGHPISLDLAKEALKDL 358 >gi|94308946|ref|YP_582156.1| chromosomal replication initiation protein [Cupriavidus metallidurans CH34] gi|123384106|sp|Q1LSI9|DNAA_RALME RecName: Full=Chromosomal replication initiator protein DnaA gi|93352798|gb|ABF06887.1| chromosomal replication initiator protein DnaA [Cupriavidus metallidurans CH34] Length = 579 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 87/234 (37%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD----- 86 ++ D+ + A + A + P + + L G G GK+ L + + Sbjct: 245 NPILTFDNFVTGKANQLARAAAIQVANNPGKSYNPLYLYGGVGLGKTHLIHAIGNFMLME 304 Query: 87 --KSRSTRFSNIAKSLDSILIDTRKP-------------VLLEDIDLLDF---NDTQLFH 128 ++R D + RK +L++DI + F+ Sbjct: 305 NPRARIRYIHAEQYVSDVVKAYQRKAFDEFKRYYHSLDLLLIDDIQFFSGKNRTQEEFFY 364 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + +++T+ T+P L SR + V I P+ + +++K A Sbjct: 365 AFEALIANRAQVIITSDTYPKEITGIDDRLISRFDSGLTVAIEPPELEMRVAILMKKAAA 424 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + +++A ++ + + ++ E + K+ + G IT + E LK+ Sbjct: 425 ENVSVPEEVAFFVAKHLRSNVRELEGALRKILAFSNFHGKDITIDVTREALKDL 478 >gi|134294129|ref|YP_001117864.1| chromosomal replication initiation protein [Burkholderia vietnamiensis G4] gi|166201869|sp|A4J9S6|DNAA_BURVG RecName: Full=Chromosomal replication initiator protein DnaA gi|134137286|gb|ABO53029.1| chromosomal replication initiator protein DnaA [Burkholderia vietnamiensis G4] Length = 525 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 88/234 (37%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWS-----D 86 ++ D+ + A + A + P + L G G GK+ L + D Sbjct: 191 NPVLTFDNFVTGKANQLARAAAIQVAHNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 250 Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128 K+ + A+ S ++ + +D +DLL +D + F+ Sbjct: 251 KAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 310 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + +++T+ T+P L SR + V I P+ + ++++ Sbjct: 311 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 370 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + +A ++ + + ++ E + K+ + G I+ L E LK+ Sbjct: 371 EGVNLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREISIELTKEALKDL 424 >gi|134096621|ref|YP_001102282.1| chromosomal replication initiation protein [Saccharopolyspora erythraea NRRL 2338] gi|291005725|ref|ZP_06563698.1| chromosomal replication initiation protein [Saccharopolyspora erythraea NRRL 2338] gi|133909244|emb|CAL99356.1| chromosomal replication initiator protein DnaA [Saccharopolyspora erythraea NRRL 2338] Length = 592 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 41/270 (15%), Positives = 98/270 (36%), Gaps = 37/270 (13%) Query: 9 SFFVPDKQKNDQPKNKEEQLFFSFP----------RCLGISRDDLLVHSAIE---QAVRL 55 + P + P+ ++ Q F+ P + D ++ ++ A Sbjct: 217 NEIWPTFGRGQAPEAQQGQ-PFTAPKHAPPTSQTRLNAKYTFDTFVIGASNRFAHAAAVA 275 Query: 56 IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS------TRFSNIAKSLDSILIDTRK 109 P+ + + G SG GK+ L + ++ R+ + + + + R Sbjct: 276 AAEAPARAYNPLFIWGESGLGKTHLLHAVGHYAQRLFPGMRVRYVSTEEFTNDFINSLRD 335 Query: 110 --------------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 +L++DI L+ + + FH N++H + +++++ P Sbjct: 336 DRQVAFQRRYRDVDVLLVDDIQFLEGKEGTQEEFFHTFNTLHNSNKQIVVSSDRPPKGLR 395 Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 L +R + + I P+ + ++ K A ++ + +I R+ER++ Sbjct: 396 TLEDRLRTRFEWGLITDIQPPELETRIAILRKKAAQDRMNAPADVLEFIAARIERNIREL 455 Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKET 242 E + ++ A + LA VL++ Sbjct: 456 EGALIRVTAFASLNRQPVDVQLAEIVLRDL 485 >gi|289705896|ref|ZP_06502275.1| chromosomal replication initiator protein DnaA [Micrococcus luteus SK58] gi|289557381|gb|EFD50693.1| chromosomal replication initiator protein DnaA [Micrococcus luteus SK58] Length = 515 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 81/232 (34%), Gaps = 26/232 (11%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS--- 90 + ++ S+ A ++ + + G SG GK+ L + +R Sbjct: 177 RYHFETFVIGSSNRFAHAAANAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYP 236 Query: 91 ---TRFSNIAKSLDSILIDTR--------------KPVLLEDIDLLDFND---TQLFHII 130 R+ N + + + R +L++DI L + + FH Sbjct: 237 GLRVRYVNSEEFTNDFINSIRHDEGASFKQVYRNVDILLIDDIQFLADKEATVEEFFHTF 296 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N+++ + +++T+ P L SR + + I PD + ++ K Sbjct: 297 NTLYNNNKQVVITSDLPPKQLSGFEDRLRSRFEWGLITDIQPPDLETRIAILRKKAEAEG 356 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + YI R+ ++ E + ++ A + LA VLK+ Sbjct: 357 LVAPPEALEYIASRISTNIRELEGALIRVTAFASLNRQTVDIELAEHVLKDL 408 >gi|326563702|gb|EGE13953.1| DnaA family protein [Moraxella catarrhalis 46P47B1] gi|326564422|gb|EGE14650.1| DnaA family protein [Moraxella catarrhalis 12P80B1] gi|326577487|gb|EGE27367.1| DnaA family protein [Moraxella catarrhalis O35E] Length = 254 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 38/227 (16%), Positives = 87/227 (38%), Gaps = 18/227 (7%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 + Q + S +D S+ + ID R + +VG SG GK+ LA+ Sbjct: 2 TQAIQDSLNLDIRPEASLEDF-QSSSYRPILDAIDKLVQGSLRELFIVGDSGFGKTHLAS 60 Query: 83 IWSDKSRS------------TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLF 127 + S + + ++ ++++D+ ++ + LF Sbjct: 61 AIYEHYTSMTSKMVISLNLTELIEQDPHATALVGLEMFDLIIVDDLQMVRHSYEWQEGLF 120 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD-DFLEKVIVKMF 186 H+IN + ++ +L A + L DL +RL A ++ + DD + +I + Sbjct: 121 HLINRLREHQKQILYLADDPARELQIGLLDLHTRLSLAPMLTLPDNDDINDRRILIEVIL 180 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233 + + +++ Y+++ R+ ++D + L+R + Sbjct: 181 KKKNWKLPEEIFDYLLEEGPRNAGDINTILDHI-RPLLTRLSRVQIP 226 >gi|254468744|ref|ZP_05082150.1| chromosomal replication initiator protein DnaA [beta proteobacterium KB13] gi|207087554|gb|EDZ64837.1| chromosomal replication initiator protein DnaA [beta proteobacterium KB13] Length = 450 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 35/231 (15%), Positives = 90/231 (38%), Gaps = 26/231 (11%) Query: 38 ISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK------- 87 ++ ++ + A + A + P + + G G GK+ L +K Sbjct: 119 LNFENFVTGRANQLATAAAKQVSERPGESYNPLFIYGGVGLGKTHLLQSIGNKVKEENKD 178 Query: 88 ------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDF---NDTQLFHIIN 131 +++ K+ + D + +L++DI + + F+ N Sbjct: 179 FKIKYLHAERYVTDVVKAYEGKTFDQFKKNYHSLDLLLIDDIQFIGKKNRTQEEFFYAFN 238 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 ++ + +++T ++P L +R V I P+ + +++K +I Sbjct: 239 TLIENKKQIIITCDSYPKEIQGVDERLRTRFSWGLTVAIEPPELEMRVAILLKKAEISKI 298 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + +A +I +++ ++ E ++++ L+ + I +LA E LK+ Sbjct: 299 TLPEDVAFFIAKQIRSNVRELEGALNRIVALSNFTNLPIDLNLAKEALKDL 349 >gi|262193327|ref|YP_003264536.1| chromosomal replication initiator protein DnaA [Haliangium ochraceum DSM 14365] gi|262076674|gb|ACY12643.1| chromosomal replication initiator protein DnaA [Haliangium ochraceum DSM 14365] Length = 498 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 37/237 (15%), Positives = 74/237 (31%), Gaps = 31/237 (13%) Query: 35 CLGISRDDLLVHSAIEQAVRLID-----SWPSWPSRVVILVGPSGSGKSCLANIWSDKSR 89 + D + + + A+ P V + G G GK+ L + Sbjct: 162 NPRYTFDSFVAGPSNQLALAASQAAASSHPPK--YNPVFICGGVGLGKTHLLHSIGHSLH 219 Query: 90 STRFSNIAKSLDSILI---------------------DTRKPVLLEDIDLLDFND---TQ 125 R L + +L++D+ L D + Sbjct: 220 GLRPDARILYLSGERFMNEYILAIRSNRMHEFRRRYREGCDLLLIDDVQFLAGKDGTQDE 279 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 FH N++H +++TA P L SR + + I P+ + ++ + Sbjct: 280 FFHTFNALHDSQRQIVLTADRKPHEISDIADRLRSRFQWGLLADIEPPELEMRMAILRQK 339 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 I + + YI + ++ E + ++ A IT + A E L+ + Sbjct: 340 AEAEHIELPDDVVLYIATAIRANVRELEGALIRLSAYASLSRKPITLAFARETLEGS 396 >gi|221201814|ref|ZP_03574851.1| chromosomal replication initiator protein DnaA [Burkholderia multivorans CGD2M] gi|221207680|ref|ZP_03580688.1| chromosomal replication initiator protein DnaA [Burkholderia multivorans CGD2] gi|221172526|gb|EEE04965.1| chromosomal replication initiator protein DnaA [Burkholderia multivorans CGD2] gi|221178234|gb|EEE10644.1| chromosomal replication initiator protein DnaA [Burkholderia multivorans CGD2M] Length = 524 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 33/234 (14%), Positives = 85/234 (36%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87 ++ D+ + A + A P + L G G GK+ L + ++ Sbjct: 190 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 249 Query: 88 --SRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128 R+ + + + ++ + +L++DI + F+ Sbjct: 250 KPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 309 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + +++T+ T+P L SR + V I P+ + ++++ Sbjct: 310 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 369 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + +A ++ + + ++ E + K+ + G I+ L E LK+ Sbjct: 370 EGVNLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREISIELTKEALKDL 423 >gi|291612473|ref|YP_003522630.1| chromosomal replication initiator protein DnaA [Sideroxydans lithotrophicus ES-1] gi|291582585|gb|ADE10243.1| chromosomal replication initiator protein DnaA [Sideroxydans lithotrophicus ES-1] Length = 447 Score = 105 bits (263), Expect = 6e-21, Method: Composition-based stats. Identities = 40/237 (16%), Positives = 84/237 (35%), Gaps = 26/237 (10%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW------- 84 + D + A + A + P + + G G GK+ L Sbjct: 113 NSALVFDTFVTGKANQLAHAAAIQVAETPGVAYNPLFIYGGVGLGKTHLLQAIGNLVSKK 172 Query: 85 ------SDKSRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLD---FNDTQLFH 128 + S + ++ + D + +L++DI + + F+ Sbjct: 173 NPQARICYIHATNYISGVVRAFQTKNFDEFKQFYNSLDLLLIDDIQFIADKPGTQQEFFY 232 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 +NS+ + +++T TFP P L SR V I P + ++++ A Sbjct: 233 TLNSLIDTNKQVVITCDTFPKEITGIEPRLTSRFTCGLTVAIEPPGLEMRVAILLQKSAT 292 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 I + +A +I + + ++ E +++++ A I+ LA E LK+ Sbjct: 293 NGSPISEDVAFFIAKHVRSNIRELEGALNRIEAYARFHKRIISIELAKEALKDLLAA 349 >gi|187922036|ref|YP_001893678.1| chromosomal replication initiation protein [Burkholderia phytofirmans PsJN] gi|226735790|sp|B2SZ75|DNAA_BURPP RecName: Full=Chromosomal replication initiator protein DnaA gi|187713230|gb|ACD14454.1| chromosomal replication initiator protein DnaA [Burkholderia phytofirmans PsJN] Length = 545 Score = 105 bits (263), Expect = 6e-21, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 88/234 (37%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIW-----SD 86 ++ D+ + A + A P + L G G GK+ L + D Sbjct: 211 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLMD 270 Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128 K+ + A+ S ++ + +D +DLL +D + F+ Sbjct: 271 KAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 330 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + +++T+ T+P L SR + V I P+ + ++++ Sbjct: 331 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 390 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + +++ +A ++ + + ++ E + K+ + G IT + E LK+ Sbjct: 391 EFVSLNEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIEVTKEALKDL 444 >gi|302669375|ref|YP_003829335.1| chromosomal replication initiator protein DnaA1 [Butyrivibrio proteoclasticus B316] gi|302393848|gb|ADL32753.1| chromosomal replication initiator protein DnaA1 [Butyrivibrio proteoclasticus B316] Length = 466 Score = 105 bits (263), Expect = 6e-21, Method: Composition-based stats. Identities = 39/241 (16%), Positives = 85/241 (35%), Gaps = 29/241 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLAN-----IWSD 86 D +V S + A + P + L G G GK+ L + + Sbjct: 126 NPKYRFDTFVVGSNNKFAHSASLAVAESPGISYNPLFLYGGPGLGKTHLMHSIGHFVMEH 185 Query: 87 KSRSTRFSNIAKSLDSILIDTRKP------------------VLLEDIDLLDFND---TQ 125 R+ ++ + +I++ + ++++D+ + + + Sbjct: 186 NRRAKVLYVTSEQFTNEVIESIRSGKAESMSKLREKYRTVDVLMVDDVQFIIGKESTQEE 245 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 FH N +HQ +++++ P SR + + I PD + ++ K Sbjct: 246 FFHTFNELHQAGKQIILSSDKPPKEMETLEERFRSRFEMGLIADIQSPDYETRMAILQKN 305 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 + ID ++ YI ++ ++ E +K+ + + IT A E LK+ Sbjct: 306 AENYGKHIDAEVINYIATNIKSNIRELEGAYNKIIAYSRLNNVDITLENAMEALKDIIYP 365 Query: 246 D 246 D Sbjct: 366 D 366 >gi|323344469|ref|ZP_08084694.1| replication initiation protein DnaA [Prevotella oralis ATCC 33269] gi|323094596|gb|EFZ37172.1| replication initiation protein DnaA [Prevotella oralis ATCC 33269] Length = 469 Score = 105 bits (263), Expect = 6e-21, Method: Composition-based stats. Identities = 33/247 (13%), Positives = 83/247 (33%), Gaps = 31/247 (12%) Query: 29 FFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCL---- 80 + + + + + + + + + + GPSG GK+ L Sbjct: 126 PLDSQLNPHQTFANYIEGDSNKLPRSIGLSIAEHPNTAQFNPMFIYGPSGCGKTHLINAI 185 Query: 81 -----------------ANIWSDK-SRSTRFSNIAKSLDSILIDTRKPVLLEDID---LL 119 A ++ + S +T +++ ++ T ++++DI Sbjct: 186 GMKIREHYPRKRVLYVSARLFQVQFSNATLRNSVNDFIN--FYQTIDVLIVDDIQEWITA 243 Query: 120 DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179 FHI N + + +++ + PV L +R + ++ P+ Sbjct: 244 VKTQNTFFHIFNHLFKNGKRIILASDRPPVDLEGMNDRLLTRFSCGLIAELEQPNVKLCI 303 Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 ++ + I K++ +I S+ + +V+ + ++ I LA V+ Sbjct: 304 DILNNKIHRDGLDIPKEVVEFIASSANGSVRDLQGVVNSLLAYSVVYNSSIDMRLAERVI 363 Query: 240 KETQQCD 246 K + D Sbjct: 364 KRAVKID 370 >gi|225677165|ref|ZP_03788163.1| chromosomal replication initiation protein [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590789|gb|EEH12018.1| chromosomal replication initiation protein [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 460 Score = 105 bits (263), Expect = 6e-21, Method: Composition-based stats. Identities = 37/236 (15%), Positives = 85/236 (36%), Gaps = 30/236 (12%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVV-----ILVGPSGSGKSCLANIWS-- 85 P + D+ +V E A ++ L G G GK+ L + + Sbjct: 123 PLDPRFTFDNFVVGKPNELAFTAAKRVAESIDPILGSNPLFLYGGVGLGKTHLMHAIAWH 182 Query: 86 ------DKSRSTRFSN--------IAKSLDSILI-----DTRKPVLLEDIDLLDFND--- 123 K + S A I++ + ++++D+ + D Sbjct: 183 IVNSPSAKRKVVYLSAEKFMYQYITALRSKDIMLFKEQFRSVDVLMVDDVQFISGKDSTQ 242 Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 + FH N++ + L+++A P + SRL V I+ + ++ Sbjct: 243 EEFFHTFNALIDQNKQLVISADRSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQ 302 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 +++ K + ++ + ++ ++ E ++K+ + +L G +T A+E L Sbjct: 303 AKVEQMNMYVPKDVLEFLARNIKSNIRELEGALNKVTHTSLI-GRSMTVESASETL 357 >gi|5702042|emb|CAB52256.1| dnaA protein [Wolbachia sp. wRi] Length = 454 Score = 105 bits (263), Expect = 6e-21, Method: Composition-based stats. Identities = 37/236 (15%), Positives = 85/236 (36%), Gaps = 30/236 (12%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVV-----ILVGPSGSGKSCLANIWS-- 85 P + D+ +V E A ++ L G G GK+ L + + Sbjct: 123 PLDPRFTFDNFVVGKPNELAFTAAKRVAESIDPILGSNPLFLYGGVGLGKTHLMHAIAWH 182 Query: 86 ------DKSRSTRFSN--------IAKSLDSILI-----DTRKPVLLEDIDLLDFND--- 123 K + S A I++ + ++++D+ + D Sbjct: 183 IVNSPSAKRKVVYLSAEKFMYQYITALRSKDIMLFKEQFRSVDVLMVDDVQFISGKDSTQ 242 Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 + FH N++ + L+++A P + SRL V I+ + ++ Sbjct: 243 EEFFHTFNALIDQNKQLVISADRSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQ 302 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 +++ K + ++ + ++ ++ E ++K+ + +L G +T A+E L Sbjct: 303 AKVEQMNMYVPKDVLEFLARNIKSNIRELEGALNKVTHTSLI-GRSMTVESASETL 357 >gi|42519921|ref|NP_965836.1| chromosomal replication initiation protein [Wolbachia endosymbiont of Drosophila melanogaster] gi|225629873|ref|YP_002726664.1| chromosomal replication initiator protein DnaA [Wolbachia sp. wRi] gi|61212648|sp|Q73IZ0|DNAA_WOLPM RecName: Full=Chromosomal replication initiator protein DnaA gi|42409658|gb|AAS13770.1| chromosomal replication initiator protein DnaA [Wolbachia endosymbiont of Drosophila melanogaster] gi|67810247|gb|AAY81988.1| chromosomal replication initiator protein [Wolbachia pipientis] gi|225591854|gb|ACN94873.1| chromosomal replication initiator protein DnaA [Wolbachia sp. wRi] Length = 460 Score = 105 bits (263), Expect = 6e-21, Method: Composition-based stats. Identities = 37/236 (15%), Positives = 85/236 (36%), Gaps = 30/236 (12%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVV-----ILVGPSGSGKSCLANIWS-- 85 P + D+ +V E A ++ L G G GK+ L + + Sbjct: 123 PLDPRFTFDNFVVGKPNELAFTAAKRVAESIDPILGSNPLFLYGGVGLGKTHLMHAIAWH 182 Query: 86 ------DKSRSTRFSN--------IAKSLDSILI-----DTRKPVLLEDIDLLDFND--- 123 K + S A I++ + ++++D+ + D Sbjct: 183 IVNSPSAKRKVVYLSAEKFMYQYITALRSKDIMLFKEQFRSVDVLMVDDVQFISGKDSTQ 242 Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 + FH N++ + L+++A P + SRL V I+ + ++ Sbjct: 243 EEFFHTFNALIDQNKQLVISADRSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQ 302 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 +++ K + ++ + ++ ++ E ++K+ + +L G +T A+E L Sbjct: 303 AKVEQMNMYVPKDVLEFLARNIKSNIRELEGALNKVTHTSLI-GRSMTVESASETL 357 >gi|58698404|ref|ZP_00373316.1| chromosomal replication initiator protein DnaA [Wolbachia endosymbiont of Drosophila ananassae] gi|58535086|gb|EAL59173.1| chromosomal replication initiator protein DnaA [Wolbachia endosymbiont of Drosophila ananassae] Length = 464 Score = 105 bits (263), Expect = 6e-21, Method: Composition-based stats. Identities = 37/236 (15%), Positives = 85/236 (36%), Gaps = 30/236 (12%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVV-----ILVGPSGSGKSCLANIWS-- 85 P + D+ +V E A ++ L G G GK+ L + + Sbjct: 127 PLDPRFTFDNFVVGKPNELAFTAAKRVAESIDPILGSNPLFLYGGVGLGKTHLMHAIAWH 186 Query: 86 ------DKSRSTRFSN--------IAKSLDSILI-----DTRKPVLLEDIDLLDFND--- 123 K + S A I++ + ++++D+ + D Sbjct: 187 IVNSPSAKRKVVYLSAEKFMYQYITALRSKDIMLFKEQFRSVDVLMVDDVQFISGKDSTQ 246 Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 + FH N++ + L+++A P + SRL V I+ + ++ Sbjct: 247 EEFFHTFNALIDQNKQLVISADRSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQ 306 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 +++ K + ++ + ++ ++ E ++K+ + +L G +T A+E L Sbjct: 307 AKVEQMNMYVPKDVLEFLARNIKSNIRELEGALNKVTHTSLI-GRSMTVESASETL 361 >gi|254463282|ref|ZP_05076698.1| chromosomal replication initiator protein DnaA [Rhodobacterales bacterium HTCC2083] gi|206679871|gb|EDZ44358.1| chromosomal replication initiator protein DnaA [Rhodobacteraceae bacterium HTCC2083] Length = 458 Score = 105 bits (263), Expect = 6e-21, Method: Composition-based stats. Identities = 38/244 (15%), Positives = 83/244 (34%), Gaps = 31/244 (12%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSR 89 P + D +V E A + L G G GK+ L + + + + Sbjct: 117 PLDKRFTFDTFVVGKPNELAHAAARRVAEGGPVTFNPLFLYGGVGLGKTHLMHAIAHELQ 176 Query: 90 STRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFND---TQL 126 S+R L + L ++++D+ + D + Sbjct: 177 SSRPDLKVLYLSAEQFMYRFVQALRERKMMDFKSLFRAVDVLMVDDVQFIGGKDSTQEEF 236 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH N++ + ++++A P + SRL+ VV + D + ++ Sbjct: 237 FHTFNALVDQNKQIIISADRAPGEIKGLEDRIKSRLQCGLVVDLHPTDYELRLGILQSKV 296 Query: 187 ADR-----QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + + ID+ + ++ R+ ++ E + ++ A G IT L + L + Sbjct: 297 EIQKAQYPGLHIDEGIIEFLAHRISTNVRVLEGALTRLFAFASLVGREITMDLTVDCLSD 356 Query: 242 TQQC 245 + Sbjct: 357 VLRA 360 >gi|325567641|ref|ZP_08144308.1| DNA-directed DNA replication initiator protein [Enterococcus casseliflavus ATCC 12755] gi|325159074|gb|EGC71220.1| DNA-directed DNA replication initiator protein [Enterococcus casseliflavus ATCC 12755] Length = 445 Score = 105 bits (263), Expect = 6e-21, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 82/234 (35%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK---- 87 + D ++ + A + P + G G GK+ L + + Sbjct: 110 NEKYTFDTFVIGKGNQMAHAAALVVAEDPGSIYNPLFFYGGVGLGKTHLMHAIGHQMLLK 169 Query: 88 --------------SRSTRFSNIAKSLDSILIDTRK--PVLLEDIDLL---DFNDTQLFH 128 + S ++ + R +L++DI L + + F+ Sbjct: 170 RPNAKIKYVSSENFTNDFITSIQKNKMEDFRNEYRNVDLLLVDDIQFLVNKEGTQEEFFN 229 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 +++ + +++T+ P L SR V I+ PD + ++ K Sbjct: 230 TFEELYRNNKQIVLTSDRLPNEIPTLPERLVSRFAWGLSVDITPPDLETRTAILRKKAEA 289 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ I +YI +++ ++ E + ++ A + IT SLAAE +K Sbjct: 290 ERLEIPDDTLSYIAGQIDSNIRELEGALVRVQAFATMQNSDITTSLAAEAIKAL 343 >gi|257875893|ref|ZP_05655546.1| chromosomal replication initiator protein [Enterococcus casseliflavus EC20] gi|257810059|gb|EEV38879.1| chromosomal replication initiator protein [Enterococcus casseliflavus EC20] Length = 445 Score = 105 bits (263), Expect = 6e-21, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 82/234 (35%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK---- 87 + D ++ + A + P + G G GK+ L + + Sbjct: 110 NEKYTFDTFVIGKGNQMAHAAALVVAEDPGSIYNPLFFYGGVGLGKTHLMHAIGHQMLLK 169 Query: 88 --------------SRSTRFSNIAKSLDSILIDTRK--PVLLEDIDLL---DFNDTQLFH 128 + S ++ + R +L++DI L + + F+ Sbjct: 170 RPNAKIKYVSSENFTNDFITSIQKNKMEDFRNEYRNVDLLLVDDIQFLVNKEGTQEEFFN 229 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 +++ + +++T+ P L SR V I+ PD + ++ K Sbjct: 230 TFEELYRNNKQIVLTSDRLPNEIPTLPERLVSRFAWGLSVDITPPDLETRTAILRKKAEA 289 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ I +YI +++ ++ E + ++ A + IT SLAAE +K Sbjct: 290 ERLEIPDDTLSYIAGQIDSNIRELEGALVRVQAFATMQNSDITTSLAAEAIKAL 343 >gi|257871389|ref|ZP_05651042.1| chromosomal replication initiator protein [Enterococcus gallinarum EG2] gi|257805553|gb|EEV34375.1| chromosomal replication initiator protein [Enterococcus gallinarum EG2] Length = 445 Score = 105 bits (263), Expect = 6e-21, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 82/234 (35%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK---- 87 + D ++ + A + P + G G GK+ L + + Sbjct: 110 NEKYTFDTFVIGKGNQMAHAAALVVAEDPGSIYNPLFFYGGVGLGKTHLMHAIGHQMLLK 169 Query: 88 --------------SRSTRFSNIAKSLDSILIDTRK--PVLLEDIDLL---DFNDTQLFH 128 + S ++ + R +L++DI L + + F+ Sbjct: 170 RPNAKIKYVSSENFTNDFITSIQKNKMEDFRNEYRNVDLLLVDDIQFLVNKEGTQEEFFN 229 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 +++ + +++T+ P L SR V I+ PD + ++ K Sbjct: 230 TFEELYRNNKQIVLTSDRLPNEIPTLPERLVSRFAWGLSVDITPPDLETRTAILRKKAEA 289 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ I +YI +++ ++ E + ++ A + IT SLAAE +K Sbjct: 290 ERLEIPDDTLSYIAGQIDSNIRELEGALVRVQAFATMQNSDITTSLAAEAIKAL 343 >gi|257866276|ref|ZP_05645929.1| chromosomal replication initiator protein [Enterococcus casseliflavus EC30] gi|257873208|ref|ZP_05652861.1| chromosomal replication initiator protein [Enterococcus casseliflavus EC10] gi|257800234|gb|EEV29262.1| chromosomal replication initiator protein [Enterococcus casseliflavus EC30] gi|257807372|gb|EEV36194.1| chromosomal replication initiator protein [Enterococcus casseliflavus EC10] Length = 445 Score = 105 bits (263), Expect = 6e-21, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 82/234 (35%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK---- 87 + D ++ + A + P + G G GK+ L + + Sbjct: 110 NEKYTFDTFVIGKGNQMAHAAALVVAEDPGSIYNPLFFYGGVGLGKTHLMHAIGHQMLLK 169 Query: 88 --------------SRSTRFSNIAKSLDSILIDTRK--PVLLEDIDLL---DFNDTQLFH 128 + S ++ + R +L++DI L + + F+ Sbjct: 170 RPNAKIKYVSSENFTNDFITSIQKNKMEDFRNEYRNVDLLLVDDIQFLVNKEGTQEEFFN 229 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 +++ + +++T+ P L SR V I+ PD + ++ K Sbjct: 230 TFEELYRNNKQIVLTSDRLPNEIPTLPERLVSRFAWGLSVDITPPDLETRTAILRKKAEA 289 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ I +YI +++ ++ E + ++ A + IT SLAAE +K Sbjct: 290 ERLEIPDDTLSYIAGQIDSNIRELEGALVRVQAFATMQNSDITTSLAAEAIKAL 343 >gi|303235975|ref|ZP_07322578.1| chromosomal replication initiator protein DnaA [Prevotella disiens FB035-09AN] gi|302483848|gb|EFL46840.1| chromosomal replication initiator protein DnaA [Prevotella disiens FB035-09AN] Length = 468 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 34/255 (13%), Positives = 82/255 (32%), Gaps = 35/255 (13%) Query: 20 QPKNKEEQLFFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGS 75 P+ + QL S + + + + + + + + + GPSG Sbjct: 122 APQEIDSQLDL------HKSFSNYIEGDSNKLPRSIGLSIAEHPNTTQFNPMFIYGPSGC 175 Query: 76 GKSCL---------------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 GK+ L A ++ + ++ +N T ++++ Sbjct: 176 GKTHLINAIGLKIKQLYPQKRVLYISARLFQVQYTNSVLNNTTNDFIG-FYQTIDVLIVD 234 Query: 115 DID---LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 DI FHI N + +++ PV L +R + ++ Sbjct: 235 DIQEWITSIKTQDTFFHIFNHLFMNGKRIVLACDRPPVELKGMNDRLLTRFSCGLIAELE 294 Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231 P+ ++ + I ++ +I Q S+ + +++ + ++ + Sbjct: 295 KPNIQLCIDILNSKIKRDGLNIPDEVVQFIAQTANGSVRDLQGIINSLLAYSVVYNSNVD 354 Query: 232 RSLAAEVLKETQQCD 246 LA V+K + D Sbjct: 355 MRLAERVIKRAVKID 369 >gi|224418815|ref|ZP_03656821.1| chromosomal replication initiation protein [Helicobacter canadensis MIT 98-5491] gi|253826661|ref|ZP_04869546.1| Chromosomal replication initiator protein dnaA [Helicobacter canadensis MIT 98-5491] gi|313142334|ref|ZP_07804527.1| chromosomal replication initiator protein dnaA [Helicobacter canadensis MIT 98-5491] gi|253510067|gb|EES88726.1| Chromosomal replication initiator protein dnaA [Helicobacter canadensis MIT 98-5491] gi|313131365|gb|EFR48982.1| chromosomal replication initiator protein dnaA [Helicobacter canadensis MIT 98-5491] Length = 430 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 37/234 (15%), Positives = 87/234 (37%), Gaps = 27/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSW---PSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91 ++ + +V ++ A + + S +++ G +G GK+ L N + + + Sbjct: 98 NPSLTFNSFIVGNSNSFAFNVAKAVAQNQSTIYNPLVIYGNTGLGKTHLLNAIGNTNANV 157 Query: 92 RFSNIAKSLDSILID------------------TRKPVLLEDIDLLDFN---DTQLFHII 130 S I + + L D +L++DI L + FH Sbjct: 158 GKSVIYTTSEQFLNDYLLHIRNNTMDRFREKYRACDYLLIDDIQFLSGKNQIQEEFFHTF 217 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N + + + +++T+ P L +R + + I P+ + +I Sbjct: 218 NELKKNNKQIVLTSDRPPKDMNGLEERLKTRFTSGLLADIQPPELETKINIINAKCELDG 277 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL--SRGMGITRSLAAEVLKET 242 I + K+ +I + ++ E ++ K++ ++ + IT ++LKE Sbjct: 278 IHLSPKIIDFIAANINDNIREIEGVLVKLN-FSINVTNIQEITIDFVRDILKEY 330 >gi|209515897|ref|ZP_03264759.1| chromosomal replication initiator protein DnaA [Burkholderia sp. H160] gi|209503745|gb|EEA03739.1| chromosomal replication initiator protein DnaA [Burkholderia sp. H160] Length = 387 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 87/234 (37%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIW-----SD 86 ++ D+ + A + A P + L G G GK+ L + D Sbjct: 53 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLMD 112 Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128 K + A+ S ++ + +D +DLL +D + F+ Sbjct: 113 KPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 172 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + +++T+ T+P L SR + V I P+ + ++++ Sbjct: 173 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 232 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + +++ +A ++ + + ++ E + K+ + G IT L E LK+ Sbjct: 233 EFVSLNEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDL 286 >gi|296157625|ref|ZP_06840460.1| chromosomal replication initiator protein DnaA [Burkholderia sp. Ch1-1] gi|295892397|gb|EFG72180.1| chromosomal replication initiator protein DnaA [Burkholderia sp. Ch1-1] Length = 537 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 88/234 (37%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIW-----SD 86 ++ D+ + A + A P + L G G GK+ L + D Sbjct: 203 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLMD 262 Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128 K+ + A+ S ++ + +D +DLL +D + F+ Sbjct: 263 KAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 322 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + +++T+ T+P L SR + V I P+ + ++++ Sbjct: 323 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 382 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + +++ +A ++ + + ++ E + K+ + G IT + E LK+ Sbjct: 383 EFVSLNEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIEVTKEALKDL 436 >gi|68171134|ref|ZP_00544543.1| chromosomal replication initiator protein, DnaA [Ehrlichia chaffeensis str. Sapulpa] gi|88658026|ref|YP_507606.1| chromosomal replication initiation protein [Ehrlichia chaffeensis str. Arkansas] gi|123722775|sp|Q2GG27|DNAA_EHRCR RecName: Full=Chromosomal replication initiator protein DnaA gi|67999459|gb|EAM86099.1| chromosomal replication initiator protein, DnaA [Ehrlichia chaffeensis str. Sapulpa] gi|88599483|gb|ABD44952.1| chromosomal replication initiator protein DnaA [Ehrlichia chaffeensis str. Arkansas] Length = 464 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 37/242 (15%), Positives = 87/242 (35%), Gaps = 28/242 (11%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIWS-- 85 P + D+ +V E A + + L G G GK+ L + + Sbjct: 127 PLDPRFTFDNFVVGKPNELAFAAARRVAESNEPISGSNPLFLYGGVGLGKTHLMHAIAWY 186 Query: 86 --------------DKSRSTRFSNIAKSLDSILIDTR----KPVLLEDIDLLDFND---T 124 + ++ +S D +L + ++++D+ + D Sbjct: 187 IIKSSSKRKIAYLSAEKFMYQYVTALRSKDIMLFKEQFRSVDILMVDDVQFISGKDSTQE 246 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + FH N++ + L+++A P + SRL V I+ + ++ Sbjct: 247 EFFHTFNALIDQNKQLVISADRSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQL 306 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 I I K+ ++ + ++ ++ E ++K+ + G IT A+++L + + Sbjct: 307 KVEKMGINIPNKVLEFLAKNIKSNIRELEGALNKVVAHSSLVGCSITLDSASDILSDLLR 366 Query: 245 CD 246 + Sbjct: 367 AN 368 >gi|295394846|ref|ZP_06805059.1| ATPase involved in DNA replication initiation [Brevibacterium mcbrellneri ATCC 49030] gi|294972179|gb|EFG48041.1| ATPase involved in DNA replication initiation [Brevibacterium mcbrellneri ATCC 49030] Length = 476 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 40/260 (15%), Positives = 89/260 (34%), Gaps = 33/260 (12%) Query: 13 PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VIL 69 P + P E + D ++ ++ A + P++ + + Sbjct: 112 PAQPTVVAPTESPEVGSSDL--NPKYTFDSFVIGASNRFAHAAAFAVAESPAKAYNPLFI 169 Query: 70 VGPSGSGKSCLANI-------------------------WSDKSRSTRFSNIAKSLDSIL 104 G SG GK+ L + + + S SN + Sbjct: 170 YGDSGLGKTHLLHAVGHYALQLYPKIRVRYVSSEEFVNDFINTVGSQVTSNTLRPAFQRR 229 Query: 105 IDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161 ++++DI L D + FH N++H + +++T+ P L SR Sbjct: 230 YREVDILMIDDIQFLQGKDATVEEFFHTFNALHAENKQVIITSDQPPKMLKGFEERLRSR 289 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 ++ + + PD + ++ A+ + + ++ +I R+ ++ E + ++ Sbjct: 290 FESGLLTDVQPPDLETRFAILRNKAANENLAVPDEVLEFIASRVSSNIRELEGALIRVTA 349 Query: 222 LALSRGMGITRSLAAEVLKE 241 + I LA VLK+ Sbjct: 350 FSNLNEQVIDVGLAQTVLKD 369 >gi|260891931|ref|YP_003238028.1| chromosomal replication initiator protein DnaA [Ammonifex degensii KC4] gi|260864072|gb|ACX51178.1| chromosomal replication initiator protein DnaA [Ammonifex degensii KC4] Length = 444 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 42/269 (15%), Positives = 97/269 (36%), Gaps = 32/269 (11%) Query: 3 LMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW 62 ++ E+ ++ + KN+ QL + ++ +V ++ A + Sbjct: 81 ILAEEEPLYINLEAKNNSAVITPPQL------NPKYTFENFVVGNSNRFAHAAALAVAEA 134 Query: 63 PSRV---VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDS 102 P+R + + G G GK+ L + ++K + + + Sbjct: 135 PARAYNPLFIYGGVGLGKTHLMHAIGHHILSRRPDLKVAYVTTEKFTNEMIDALQMNRTQ 194 Query: 103 ILIDTRKPV---LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156 + + V L++DI L + + FH N++++ +++++ P Sbjct: 195 QFREKYRNVDVLLIDDIQFLAGKERTQEEFFHTFNTLYEAARQIVISSDRPPKEIPTLEE 254 Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216 L SR + + I PD + ++ K + + + +I R++ ++ E Sbjct: 255 RLRSRFEWGLITDIQPPDFETRVAILRKKAQLENVTVPDETLLFIADRIQSNIRELEGAF 314 Query: 217 DKMDNLALSRGMGITRSLAAEVLKETQQC 245 ++ A IT AA VLK+ Sbjct: 315 IRVVAFAALTNSPITPETAATVLKDIFHA 343 >gi|217031880|ref|ZP_03437383.1| hypothetical protein HPB128_199g88 [Helicobacter pylori B128] gi|298735501|ref|YP_003728022.1| chromosomal replication initiator protein DnaA [Helicobacter pylori B8] gi|216946532|gb|EEC25134.1| hypothetical protein HPB128_199g88 [Helicobacter pylori B128] gi|298354686|emb|CBI65558.1| chromosomal replication initiator protein DnaA [Helicobacter pylori B8] Length = 457 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 84/235 (35%), Gaps = 24/235 (10%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS 90 + ++ +V S + P V+ G +G GK+ + N + + Sbjct: 110 VKDSYTFENFVVGSCNNTVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALE 169 Query: 91 TRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFN---DTQLFHI 129 + + + L D K + LL+D L + + FH Sbjct: 170 KHKKVVLVTSEDFLTDFLKHLDNKTMDSFKAKYRHCDFFLLDDAQFLQGKPKLEEEFFHT 229 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N +H +++ + P + L SR + K+ PD + ++ + Sbjct: 230 FNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKCQLN 289 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 QI + +++ YI Q + ++ E + K+ A I +LA VL++ Q+ Sbjct: 290 QITLPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNAPIDLNLAKTVLEDLQK 344 >gi|120552945|ref|YP_957296.1| chromosomal replication initiation protein [Marinobacter aquaeolei VT8] gi|166214680|sp|A1TWJ0|DNAA_MARAV RecName: Full=Chromosomal replication initiator protein DnaA gi|120322794|gb|ABM17109.1| chromosomal replication initiator protein DnaA [Marinobacter aquaeolei VT8] Length = 487 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 37/236 (15%), Positives = 80/236 (33%), Gaps = 30/236 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW------- 84 + D + + + A + P + L G G GK+ L + Sbjct: 153 NETFTFDTFVEGKSNQLARAASMQVAENPGGAYNPLFLYGGVGLGKTHLMHAIGNEIVRR 212 Query: 85 ---------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQL 126 +D ++ + + I + + +L++DI + + Sbjct: 213 NPRAKVAYLRSERFVADMVKALQLNAINEFKR--YYRSVDALLIDDIQFFARKERSQEEF 270 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH N++ + +++T FP L SR V + P+ + +++K Sbjct: 271 FHTFNALLEGGQQVIVTCDRFPKEISDMEERLKSRFGWGLTVMVEPPELETRVAILMKKA 330 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + A +I Q++ ++ E + + A G IT E LK+ Sbjct: 331 EQANVKLSSEAAFFIAQKIRSNVRELEGALRLVIANAHFTGSEITPPFIRESLKDL 386 >gi|154250459|ref|YP_001411283.1| chromosomal replication initiator protein DnaA [Parvibaculum lavamentivorans DS-1] gi|154154409|gb|ABS61626.1| chromosomal replication initiator protein DnaA [Parvibaculum lavamentivorans DS-1] Length = 519 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 36/245 (14%), Positives = 83/245 (33%), Gaps = 31/245 (12%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDKSR 89 P + D +V + E A + L G G GK+ L + + + R Sbjct: 173 PLDPRFTFDAFVVGKSNELAHAAARRVAEATDVTFNPLFLYGGVGLGKTHLMHAIAWEIR 232 Query: 90 STRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFND---TQL 126 + L + + ++++D+ + D + Sbjct: 233 KRQPERKVLYLSAEKFMYQFVRALRFKDTMAFKQQFRSVDVLMIDDVQFISGKDSTQEEF 292 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH N++ ++ ++++A P + SRL I D + ++ Sbjct: 293 FHTFNALIDHNRQVIISADRSPSDLEGIEERIRSRLGWGLAADIHPTDYELRLGILQAKA 352 Query: 187 AD---RQ--IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + R + I + ++ R+ ++ E + ++ A G IT ++ EVL++ Sbjct: 353 DEMMQRNGPVSIPPGVLEFLAHRIVSNVRELEGALKRVVAYASLVGRPITLDMSQEVLRD 412 Query: 242 TQQCD 246 + + Sbjct: 413 LLRSN 417 >gi|209558588|ref|YP_002285060.1| chromosomal replication initiation protein [Streptococcus pyogenes NZ131] gi|226735856|sp|B5XIP2|DNAA_STRPZ RecName: Full=Chromosomal replication initiator protein DnaA gi|209539789|gb|ACI60365.1| Chromosomal replication initiator protein dnaA [Streptococcus pyogenes NZ131] Length = 451 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 41/268 (15%), Positives = 88/268 (32%), Gaps = 41/268 (15%) Query: 15 KQKNDQPKNKEEQLFFS-FPR-----CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSR 65 +Q + K +Q + P S ++ + AV + + P Sbjct: 87 EQNQTKINQKPKQQALNSLPTVTSDLNSKYSFENFIQGDENRWAVAASIAVANTPGTTYN 146 Query: 66 VVILVGPSGSGKSCLANIWSDKS------------------RSTRFSNIAKSLDSILIDT 107 + + G G GK+ L N + ++D + Sbjct: 147 PLFIWGGPGLGKTHLLNAIGNSVLLENPNARIKYITAENFINEFVIHIRLDTMDELKEKF 206 Query: 108 RKP--VLLEDIDLLD-----FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 R +L++DI L + F+ N++H + +++T+ P L + Sbjct: 207 RNLDLLLIDDIQSLAKKTLSGTQEEFFNTFNALHNNNKQIVLTSDRTPDHLNDLEDRLVT 266 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 R K V I+ PD + ++ + + Y+ + + ++ E + + Sbjct: 267 RFKWGLTVNITPPDFETRVAILTNKIQEYNFIFPQDTIEYLAGQFDSNVRDLEGALKDI- 325 Query: 221 NLALSRGMG----ITRSLAAEVLKETQQ 244 +L IT +AAE ++ +Q Sbjct: 326 --SLGANFKQIDTITVDIAAEAIRARKQ 351 >gi|15674251|ref|NP_268424.1| chromosomal replication initiation protein [Streptococcus pyogenes M1 GAS] gi|19745202|ref|NP_606338.1| chromosomal replication initiation protein [Streptococcus pyogenes MGAS8232] gi|21909537|ref|NP_663805.1| chromosomal replication initiation protein [Streptococcus pyogenes MGAS315] gi|28894913|ref|NP_801263.1| chromosomal replication initiation protein [Streptococcus pyogenes SSI-1] gi|50913347|ref|YP_059319.1| chromosomal replication initiation protein [Streptococcus pyogenes MGAS10394] gi|56808865|ref|ZP_00366576.1| COG0593: ATPase involved in DNA replication initiation [Streptococcus pyogenes M49 591] gi|71902668|ref|YP_279471.1| chromosomal replication initiation protein [Streptococcus pyogenes MGAS6180] gi|71909815|ref|YP_281365.1| chromosomal replication initiation protein [Streptococcus pyogenes MGAS5005] gi|94987632|ref|YP_595733.1| chromosomal replication initiation protein [Streptococcus pyogenes MGAS9429] gi|94989510|ref|YP_597610.1| chromosomal replication initiation protein [Streptococcus pyogenes MGAS10270] gi|94991498|ref|YP_599597.1| chromosomal replication initiation protein [Streptococcus pyogenes MGAS2096] gi|139472889|ref|YP_001127604.1| chromosomal replication initiation protein [Streptococcus pyogenes str. Manfredo] gi|61212508|sp|Q5XEM7|DNAA_STRP6 RecName: Full=Chromosomal replication initiator protein DnaA gi|61222629|sp|P0A3A4|DNAA_STRP1 RecName: Full=Chromosomal replication initiator protein DnaA gi|61222631|sp|P0A3A5|DNAA_STRP3 RecName: Full=Chromosomal replication initiator protein DnaA gi|61222632|sp|P0A3A6|DNAA_STRP8 RecName: Full=Chromosomal replication initiator protein DnaA gi|122987157|sp|Q1JP60|DNAA_STRPC RecName: Full=Chromosomal replication initiator protein DnaA gi|123382367|sp|Q1JEA5|DNAA_STRPB RecName: Full=Chromosomal replication initiator protein DnaA gi|123382466|sp|Q1JJA7|DNAA_STRPD RecName: Full=Chromosomal replication initiator protein DnaA gi|123761459|sp|Q48VX2|DNAA_STRPM RecName: Full=Chromosomal replication initiator protein DnaA gi|166215363|sp|A2RBX3|DNAA_STRPG RecName: Full=Chromosomal replication initiator protein DnaA gi|8037923|gb|AAF71535.1|AF255728_1 chromosomal initiator protein DnaA [Streptococcus pyogenes] gi|13621326|gb|AAK33146.1| Chromosomal initiator protein [Streptococcus pyogenes M1 GAS] gi|19747291|gb|AAL96837.1| chromosomal replication initiator protein [Streptococcus pyogenes MGAS8232] gi|21903717|gb|AAM78608.1| chromosomal initiator protein [Streptococcus pyogenes MGAS315] gi|28810158|dbj|BAC63096.1| chromosomal initiator protein [Streptococcus pyogenes SSI-1] gi|50902421|gb|AAT86136.1| chromosomal replication initiator protein [Streptococcus pyogenes MGAS10394] gi|71801763|gb|AAX71116.1| chromosomal replication initiator protein [Streptococcus pyogenes MGAS6180] gi|71852597|gb|AAZ50620.1| chromosomal replication initiator protein [Streptococcus pyogenes MGAS5005] gi|94541140|gb|ABF31189.1| chromosomal replication initiator protein [Streptococcus pyogenes MGAS9429] gi|94543018|gb|ABF33066.1| Chromosomal replication initiator protein dnaA [Streptococcus pyogenes MGAS10270] gi|94545006|gb|ABF35053.1| Chromosomal replication initiator protein dnaA [Streptococcus pyogenes MGAS2096] gi|134271135|emb|CAM29345.1| chromosomal replication initiator protein [Streptococcus pyogenes str. Manfredo] Length = 451 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 41/268 (15%), Positives = 88/268 (32%), Gaps = 41/268 (15%) Query: 15 KQKNDQPKNKEEQLFFS-FPR-----CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSR 65 +Q + K +Q + P S ++ + AV + + P Sbjct: 87 EQNQTKINQKPKQQALNSLPTVTSDLNSKYSFENFIQGDENRWAVAASIAVANTPGTTYN 146 Query: 66 VVILVGPSGSGKSCLANIWSDKS------------------RSTRFSNIAKSLDSILIDT 107 + + G G GK+ L N + ++D + Sbjct: 147 PLFIWGGPGLGKTHLLNAIGNSVLLENPNARIKYITAENFINEFVIHIRLDTMDELKEKF 206 Query: 108 RKP--VLLEDIDLLD-----FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 R +L++DI L + F+ N++H + +++T+ P L + Sbjct: 207 RNLDLLLIDDIQSLAKKTLSGTQEEFFNTFNALHNNNKQIVLTSDRTPDHLNDLEDRLVT 266 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 R K V I+ PD + ++ + + Y+ + + ++ E + + Sbjct: 267 RFKWGLTVNITPPDFETRVAILTNKIQEYNFIFPQDTIEYLAGQFDSNVRDLEGALKDI- 325 Query: 221 NLALSRGMG----ITRSLAAEVLKETQQ 244 +L IT +AAE ++ +Q Sbjct: 326 --SLVANFKQIDTITVDIAAEAIRARKQ 351 >gi|73666899|ref|YP_302915.1| chromosomal replication initiation protein [Ehrlichia canis str. Jake] gi|72394040|gb|AAZ68317.1| chromosomal replication initiator protein DnaA [Ehrlichia canis str. Jake] Length = 452 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 37/242 (15%), Positives = 87/242 (35%), Gaps = 28/242 (11%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIWS-- 85 P + D+ +V E A + + L G G GK+ L + + Sbjct: 115 PLDPRFTFDNFVVGKPNELAFAAARRVAESNDPISGSNPLFLYGGVGLGKTHLMHAIAWY 174 Query: 86 --------------DKSRSTRFSNIAKSLDSILIDTR----KPVLLEDIDLLDFND---T 124 + ++ +S D +L + ++++D+ + D Sbjct: 175 IIKSSSKRKIAYLSAEKFMYQYVTALRSKDIMLFKEQFRSVDILMVDDVQFISGKDSTQE 234 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + FH N++ + L+++A P + SRL V I+ + ++ Sbjct: 235 EFFHTFNALIDQNKQLVISADRSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQL 294 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 I I K+ ++ + ++ ++ E ++K+ + G IT A+++L + + Sbjct: 295 KVEKMGINIPNKVLEFLAKNIKSNIRELEGALNKVVAHSSLVGCSITLDSASDILSDLLR 354 Query: 245 CD 246 + Sbjct: 355 AN 356 >gi|167752111|ref|ZP_02424238.1| hypothetical protein ALIPUT_00353 [Alistipes putredinis DSM 17216] gi|167660352|gb|EDS04482.1| hypothetical protein ALIPUT_00353 [Alistipes putredinis DSM 17216] Length = 469 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 39/259 (15%), Positives = 82/259 (31%), Gaps = 39/259 (15%) Query: 10 FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRL-----IDSWPSWPS 64 F +P +K + + + A +D P Sbjct: 119 FVIPGLKK----------IVIDPQLNPNYTFATFIEGECNRLARSAGMAVAVD-PGHTPF 167 Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTR--FSNIAKSLDSILIDTRKP------------ 110 + + G SG GK+ + + R + S++ + Sbjct: 168 NPLYIYGNSGLGKTHIVQSIGHEVRQRHPELQVLYVSMNKFQAQFQTAYKNGEIPDFIHF 227 Query: 111 ------VLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161 ++++DI L F+I N + L++T+ PV L +R Sbjct: 228 YQMIDVLIIDDIQELTGKTGTQNAFFNIFNHLQLAGKQLILTSDKPPVELKDIEQRLLTR 287 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 K +++ PD D K+I + + ++ Y+ + ++ E + + Sbjct: 288 FKWGLSTQLNTPDYDTKVKIIRIKAQKLGLQLTDEIVRYLADNISANVREIEGALSALVA 347 Query: 222 LALSRGMGITRSLAAEVLK 240 + G ++ SL E+LK Sbjct: 348 NTVYMGKKVSLSLVKEILK 366 >gi|269954811|ref|YP_003324600.1| chromosomal replication initiator protein DnaA [Xylanimonas cellulosilytica DSM 15894] gi|269303492|gb|ACZ29042.1| chromosomal replication initiator protein DnaA [Xylanimonas cellulosilytica DSM 15894] Length = 468 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 43/269 (15%), Positives = 99/269 (36%), Gaps = 33/269 (12%) Query: 5 KEDYSFFVPDKQKN-DQPKNKEEQL--FFSFPRC--LGISRDDLLVHSAIE---QAVRLI 56 +DY P+++ + D P Q + P + ++ ++ A + Sbjct: 96 TQDY--VEPEEEDDVDAPAPPLPQPVRPAAEPTRLNPRYVFETFVIGASNRFAHAAAVAV 153 Query: 57 DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS------TRFSNIAKSLDSILIDTRK- 109 P+ + + G SG GK+ L + + + R+ N + + + Sbjct: 154 AEAPAKAYNPLFIYGDSGLGKTHLLHAIGHYAHNLYPHVRVRYVNSEEFTNDFINSIGDK 213 Query: 110 -------------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 +L++DI L + + FH N++H + +++T+ P Sbjct: 214 KQGAFQRRYRDVDVLLIDDIQFLQGKEQTMEEFFHTFNALHNANKQVVITSDVPPKQLNG 273 Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213 L SR + + + PD + ++ K A ++ + + + +YI R+ ++ E Sbjct: 274 FEDRLRSRFEWGLITDVQPPDLETRIAILRKKAASDKLDVPQDVLSYIGSRISTNIRELE 333 Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKET 242 + ++ A + LA VL++ Sbjct: 334 GALIRVTAFANLNRQQVDLPLAEIVLRDL 362 >gi|242310227|ref|ZP_04809382.1| chromosomal replication initiator protein dnaA [Helicobacter pullorum MIT 98-5489] gi|239523524|gb|EEQ63390.1| chromosomal replication initiator protein dnaA [Helicobacter pullorum MIT 98-5489] Length = 430 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 41/259 (15%), Positives = 101/259 (38%), Gaps = 29/259 (11%) Query: 10 FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW---PSWPSRV 66 F P+K+K+++ K+ Q + ++ + +V ++ A + + S Sbjct: 75 VFNPNKKKDNKHNTKKIQNATNL--NPSLTFNSFIVGNSNSFAFNVAKAVAQNQSTIYNP 132 Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID------------------TR 108 +++ G +G GK+ L N + + + S I + + L D Sbjct: 133 LMIYGNTGLGKTHLLNAIGNANVNVGKSVIYTTSEQFLNDYLLHIRNNTMDRFREKYRAC 192 Query: 109 KPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 +L++DI L + FH N + + + +++T+ P + L +R + Sbjct: 193 DYLLIDDIQFLSGKNQIQEEFFHTFNELKKNNKQIVLTSDRPPKNMDGLEERLKTRFTSG 252 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL- 224 + I P+ + +I I + ++ +I + ++ E ++ K++ ++ Sbjct: 253 LLADIQPPELETKINIINAKCELDGIHLTPQVIDFIAANINDNIREIEGVLVKLN-FSIN 311 Query: 225 -SRGMGITRSLAAEVLKET 242 + +T ++LKE Sbjct: 312 VTNVQEVTIDFVRDILKEY 330 >gi|119503573|ref|ZP_01625656.1| chromosomal replication initiation protein [marine gamma proteobacterium HTCC2080] gi|119460635|gb|EAW41727.1| chromosomal replication initiation protein [marine gamma proteobacterium HTCC2080] Length = 477 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 40/254 (15%), Positives = 83/254 (32%), Gaps = 32/254 (12%) Query: 19 DQPKNKEEQLFFSFPRC--LGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPS 73 P+ Q S G + + + + A+ P + L G Sbjct: 125 APPRAPAVQTVPSHQHNLVEGYTFRSFVEGKSNQLALAAAQQVADNPGDSYNPLFLYGGV 184 Query: 74 GSGKSCLANIW----------------------SDKSRSTRFSNIAKSLDSILIDTRKPV 111 G GK+ L + +D ++ + + I + + Sbjct: 185 GLGKTHLMHAVGNSLRRKKPDARIVYLHSERFVADMVKALQLNAINDFKR--YYRSVDAL 242 Query: 112 LLEDID---LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168 L++DI D + + FH N++ + +++T +P L SR V Sbjct: 243 LIDDIQFFANKDRSQEEFFHTFNALLEGGQQMILTCDRYPKEINGLEERLKSRFGWGLTV 302 Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228 + P+ + +++K + + A +I QR+ ++ E + ++ A G Sbjct: 303 AVEPPELETRVAILMKKAEQSGVTLPHDAAFFIAQRIRSNVRELEGALKRVIASANFTGR 362 Query: 229 GITRSLAAEVLKET 242 L E LK+ Sbjct: 363 PFDIDLIKESLKDL 376 >gi|161523181|ref|YP_001578193.1| chromosomal replication initiation protein [Burkholderia multivorans ATCC 17616] gi|189348958|ref|YP_001944586.1| chromosomal replication initiation protein [Burkholderia multivorans ATCC 17616] gi|221214574|ref|ZP_03587544.1| chromosomal replication initiator protein DnaA [Burkholderia multivorans CGD1] gi|226735788|sp|A9AI97|DNAA_BURM1 RecName: Full=Chromosomal replication initiator protein DnaA gi|160340610|gb|ABX13696.1| chromosomal replication initiator protein DnaA [Burkholderia multivorans ATCC 17616] gi|189332980|dbj|BAG42050.1| chromosomal replication initiator protein [Burkholderia multivorans ATCC 17616] gi|221165464|gb|EED97940.1| chromosomal replication initiator protein DnaA [Burkholderia multivorans CGD1] Length = 524 Score = 105 bits (262), Expect = 8e-21, Method: Composition-based stats. Identities = 33/234 (14%), Positives = 85/234 (36%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87 ++ D+ + A + A P + L G G GK+ L + ++ Sbjct: 190 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 249 Query: 88 --SRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128 R+ + + + ++ + +L++DI + F+ Sbjct: 250 KPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 309 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + +++T+ T+P L SR + V I P+ + ++++ Sbjct: 310 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 369 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + +A ++ + + ++ E + K+ + G I+ L E LK+ Sbjct: 370 EGVNLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREISIELTKEALKDL 423 >gi|326561047|gb|EGE11412.1| DnaA family protein [Moraxella catarrhalis 7169] gi|326566731|gb|EGE16870.1| DnaA family protein [Moraxella catarrhalis 103P14B1] gi|326569353|gb|EGE19413.1| DnaA family protein [Moraxella catarrhalis BC8] gi|326571448|gb|EGE21463.1| DnaA family protein [Moraxella catarrhalis BC7] gi|326575269|gb|EGE25197.1| DnaA family protein [Moraxella catarrhalis CO72] gi|326576644|gb|EGE26551.1| DnaA family protein [Moraxella catarrhalis 101P30B1] Length = 254 Score = 105 bits (262), Expect = 8e-21, Method: Composition-based stats. Identities = 38/227 (16%), Positives = 87/227 (38%), Gaps = 18/227 (7%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 + Q + S +D S+ + ID R + +VG SG GK+ LA+ Sbjct: 2 TQAIQDSLNLDIRPEASLEDF-QSSSYRPILDAIDKLVQGSLRELFIVGDSGFGKTHLAS 60 Query: 83 IWSDKSRS------------TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLF 127 + S + + ++ ++++D+ ++ + LF Sbjct: 61 AIYEHYTSMTSKMVISLNLTELIEQDPHATALVGLEMFDLIIVDDLQMVRHSYEWQEGLF 120 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD-DFLEKVIVKMF 186 H+IN + ++ +L A + L DL +RL A ++ + DD + +I + Sbjct: 121 HLINRLREHQKQILYLADDPARELQIGLLDLHTRLSLAPMLTLPDNDDINDRRILIEVIL 180 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233 + + +++ Y+++ R+ ++D + L+R + Sbjct: 181 KKKNWKLPEEIFDYLLEEGPRNAGDINTVLDHI-RPLLTRLSRVQIP 226 >gi|295675102|ref|YP_003603626.1| chromosomal replication initiator protein DnaA [Burkholderia sp. CCGE1002] gi|295434945|gb|ADG14115.1| chromosomal replication initiator protein DnaA [Burkholderia sp. CCGE1002] Length = 532 Score = 105 bits (262), Expect = 8e-21, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 87/234 (37%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIW-----SD 86 ++ D+ + A + A P + L G G GK+ L + D Sbjct: 198 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLMD 257 Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFH 128 K + A+ S ++ + +D +DLL +D + F+ Sbjct: 258 KPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 317 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + +++T+ T+P L SR + V I P+ + ++++ Sbjct: 318 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 377 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + +++ +A ++ + + ++ E + K+ + G IT L E LK+ Sbjct: 378 EFVSLNEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDL 431 >gi|29840234|ref|NP_829340.1| chromosomal replication initiation protein [Chlamydophila caviae GPIC] gi|33301061|sp|Q823E6|DNAA2_CHLCV RecName: Full=Chromosomal replication initiator protein DnaA 2 gi|29834582|gb|AAP05218.1| chromosomal replication initiator protein DnaA [Chlamydophila caviae GPIC] Length = 460 Score = 105 bits (262), Expect = 8e-21, Method: Composition-based stats. Identities = 35/238 (14%), Positives = 77/238 (32%), Gaps = 34/238 (14%) Query: 34 RCLGISRDDLLVHSAIEQAVRLI-------DSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 ++ + LV + R++ + +P + L GP GSGK+ L + Sbjct: 104 VNPEMTFGNFLVTPENDLPFRILQEFTKPAEDTAGFPFNPIYLFGPEGSGKTHLMQAAVN 163 Query: 87 ---KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDF---NDTQ 125 + + L+ + + +EDI++ + Sbjct: 164 ALREFGGKILYVASDLFTEHLVSAIRSGEMQRFRSFYRNVDALFIEDIEVFSGKGATQEE 223 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 FH NS+ +++++ P L SR + V I + L ++ Sbjct: 224 FFHTFNSLQTEGKLIVISSAYAPADLKAMEERLISRFEWGVAVPIHPLTKEGLRSFLMHQ 283 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 + I+ +++ + ++ +D L L + LA ++L E Sbjct: 284 AEQLSVRIEDTALDFLIHALSSNVKTL------IDALKLLSKRVAYKKLAQQLLYEDD 335 >gi|296112801|ref|YP_003626739.1| DnaA family protein [Moraxella catarrhalis RH4] gi|295920495|gb|ADG60846.1| DnaA family protein [Moraxella catarrhalis RH4] Length = 254 Score = 105 bits (262), Expect = 8e-21, Method: Composition-based stats. Identities = 38/227 (16%), Positives = 86/227 (37%), Gaps = 18/227 (7%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 + Q + S +D S+ + ID R + +VG SG GK+ LA+ Sbjct: 2 TQAIQDSLNLDIRPEASLEDF-QSSSYRPILDAIDKLVQGSLRELFIVGDSGFGKTHLAS 60 Query: 83 IWSDKSRS------------TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLF 127 + S + + ++ ++++D+ ++ + LF Sbjct: 61 AIYEHYTSMTSKMVISLNLTELIEQDPHATALVGLEMFDLIIVDDLQMVRHSYEWQEGLF 120 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD-DFLEKVIVKMF 186 H+IN + ++ +L A + L DL +RL A ++ + DD + +I + Sbjct: 121 HLINRLREHQKQILYLADDPARELQIGLLDLHTRLSLAPMLTLPDNDDINDRRILIEVIL 180 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233 + + +++ Y++ R+ ++D + L+R + Sbjct: 181 KKKNWKLPEEIFDYLLDEGPRNAGDINTILDHI-RPLLTRLSRVQIP 226 >gi|255017120|ref|ZP_05289246.1| chromosomal replication initiation protein [Listeria monocytogenes FSL F2-515] Length = 295 Score = 104 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 36/217 (16%), Positives = 81/217 (37%), Gaps = 28/217 (12%) Query: 48 AIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW-----SDKSRSTRFSNIAKSLDS 102 ++ A P+ + + G G GK+ L + K + ++ + Sbjct: 1 SLAVAEA-----PAKAYNPLFIYGGVGLGKTHLMHAVGHYVQQHKDNAKVMYLSSEKFTN 55 Query: 103 ILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTA 144 I + + +L++DI L + + FH N+++ +++++ Sbjct: 56 EFISSIRDNKTEEFRTKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFNTLYDEQKQIIISS 115 Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 P L SR + + I+ PD + ++ K + I ++ YI + Sbjct: 116 DRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKADGLDIPNEVMLYIANQ 175 Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++ ++ E + ++ + IT LAAE LK+ Sbjct: 176 IDSNIRELEGALIRVVAYSSLVNKDITAGLAAEALKD 212 >gi|160893411|ref|ZP_02074196.1| hypothetical protein CLOL250_00960 [Clostridium sp. L2-50] gi|156864806|gb|EDO58237.1| hypothetical protein CLOL250_00960 [Clostridium sp. L2-50] Length = 454 Score = 104 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 78/235 (33%), Gaps = 28/235 (11%) Query: 36 LGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLANIWSD----- 86 + + +V + + A + P + L G +G GK+ L + Sbjct: 116 PKYTFETFVVGESNKLAHATCLAVADSPGLDKFNPLFLYGGAGLGKTHLMQSIAHYILQH 175 Query: 87 ------------KSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128 K + I K+ + + V L++DI L + + F Sbjct: 176 NKNMKVLYVPSNKFTNEIVEAIKKNKTDEFREKYRTVDVLLIDDIQYLIGKESTQQEFFD 235 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H +++++ P SR + + I PD + ++ Sbjct: 236 TFNALHDEGKQIILSSDKPPKEIKTLEERFRSRFEWGVPIDIHAPDYETRMAILKNKVEM 295 Query: 189 RQIF-IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 I + YI + ++ E ++K+ A + IT LA +LK+ Sbjct: 296 NGYKNISDNILEYIANNVTYNVRELEGALNKISVYAELGNVTITEDLAKNILKDM 350 >gi|222475026|ref|YP_002563441.1| chromosomal replication initiator protein (dnaA) [Anaplasma marginale str. Florida] gi|254994872|ref|ZP_05277062.1| chromosomal replication initiation protein [Anaplasma marginale str. Mississippi] gi|255003006|ref|ZP_05277970.1| chromosomal replication initiation protein [Anaplasma marginale str. Puerto Rico] gi|255004132|ref|ZP_05278933.1| chromosomal replication initiation protein [Anaplasma marginale str. Virginia] gi|222419162|gb|ACM49185.1| chromosomal replication initiator protein (dnaA) [Anaplasma marginale str. Florida] Length = 471 Score = 104 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 33/242 (13%), Positives = 87/242 (35%), Gaps = 28/242 (11%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIWS-- 85 P + D+ +V E A + + + L G G GK+ L + + Sbjct: 134 PLDPRFTFDNFVVGKPNELAFAAARRVAESSAPIPGSNPLFLYGGVGLGKTHLMHAIAWY 193 Query: 86 --------------DKSRSTRFSNIAKSLDSILIDTR----KPVLLEDIDLLDFND---T 124 + ++ +S D +L + ++++D+ + D Sbjct: 194 ILNSSVKRKIAYLSAEKFMYQYVTALRSKDIMLFKEQFRSVDILMVDDVQFISGKDSTQE 253 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + FH N++ + L+++A P + SRL V I+ + ++ Sbjct: 254 EFFHTFNALIDQNKQLVISADRSPSDLDGVEDRIKSRLGWGLVADINETTFELRLGILQL 313 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 + + ++ ++ + ++ ++ E ++K+ + G +T A+ +L + + Sbjct: 314 KIEKMGVHVPNEVLEFLAKNIKSNIRELEGALNKVVAHSSLVGSSVTIESASGILSDLLR 373 Query: 245 CD 246 + Sbjct: 374 AN 375 >gi|329902527|ref|ZP_08273137.1| Chromosomal replication initiator protein DnaA [Oxalobacteraceae bacterium IMCC9480] gi|327548755|gb|EGF33394.1| Chromosomal replication initiator protein DnaA [Oxalobacteraceae bacterium IMCC9480] Length = 464 Score = 104 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 83/235 (35%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDKSRS 90 ++ D + A + A P + L G G GK+ L + ++ + Sbjct: 129 VNTALTFDSFVTGKANQLARAAAIQVADNPGVSYNPLFLYGGVGLGKTHLVHAIGNQVMA 188 Query: 91 ------TRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLF 127 R+ + + + ++ + +L++DI + F Sbjct: 189 DNPSAKIRYIHAEQYVRDVVTAYQRKGFDDFKRYYHSLDVLLIDDIQFFGGKSRTQEEFF 248 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 + ++ +++T+ T+P L SR + V + P+ + +++K A Sbjct: 249 YAFEALIAAKKQIIITSDTYPKEITGMDDRLISRFDSGLTVAVEPPELEMRVAILLKKAA 308 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + +A ++ + + ++ E + K+ + G IT + + LK+ Sbjct: 309 QEGVNFSDDVAFFVAKHLRSNVRELEGALRKILAFSRFHGKDITIEVVKDALKDL 363 >gi|300362678|ref|ZP_07058854.1| DNA-directed DNA replication initiator protein [Lactobacillus gasseri JV-V03] gi|300353669|gb|EFJ69541.1| DNA-directed DNA replication initiator protein [Lactobacillus gasseri JV-V03] Length = 464 Score = 104 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 41/265 (15%), Positives = 81/265 (30%), Gaps = 35/265 (13%) Query: 13 PDKQKNDQPKNKEEQLFF---------SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP 63 P++ +P+ K Q + D + + A + P Sbjct: 98 PERLVTPKPRIKTNQEILEDRRDEFAQDLQLNSKYTFDTFVQGEGNKLAAGAALAVADNP 157 Query: 64 SRV---VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTR------------ 108 + + G G GK+ L + + + + S Sbjct: 158 GSFYNPLFIFGGVGLGKTHLMQAIGHQMLAEKLHAKVVYIQSETFVNDFINSIKNKTQAE 217 Query: 109 --------KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 +L++DI + + FH +++ ++MT+ P Sbjct: 218 FRNKYRNCDLLLVDDIQFFSKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPELSER 277 Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 L SR V+I+ PD + ++ K + ID YI +++ ++ E + Sbjct: 278 LVSRFAWGLQVEITPPDLETRIAILRKKAETDGLAIDDSTLDYIASQVDTNIRELEGALV 337 Query: 218 KMDNLALSRGMGITRSLAAEVLKET 242 K+ A I LA E L + Sbjct: 338 KVQAHATIEREDINVDLAKEALADL 362 >gi|239916572|ref|YP_002956130.1| chromosomal replication initiator protein DnaA [Micrococcus luteus NCTC 2665] gi|118706|sp|P21173|DNAA_MICLU RecName: Full=Chromosomal replication initiator protein DnaA gi|259645255|sp|C5C7X4|DNAA_MICLC RecName: Full=Chromosomal replication initiator protein DnaA gi|149848|gb|AAA25315.1| DNA biosynthesis initiation protein (dnaA) [Micrococcus luteus] gi|239837779|gb|ACS29576.1| chromosomal replication initiator protein DnaA [Micrococcus luteus NCTC 2665] Length = 515 Score = 104 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 81/232 (34%), Gaps = 26/232 (11%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS--- 90 + ++ S+ A ++ + + G SG GK+ L + +R Sbjct: 177 RYHFETFVIGSSNRFAHAAANAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYP 236 Query: 91 ---TRFSNIAKSLDSILIDTR--------------KPVLLEDIDLLDFND---TQLFHII 130 R+ N + + + R +L++DI L + + FH Sbjct: 237 GLRVRYVNSEEFTNDFINSIRHDEGASFKQVYRNVDILLIDDIQFLADKEATVEEFFHTF 296 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N+++ + +++T+ P L SR + + I PD + ++ K Sbjct: 297 NTLYNNNKQVVITSDLPPKQLSGFEDRLRSRFEWGLITDIQPPDLETRIAILRKKAEAEG 356 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + YI R+ ++ E + ++ A + LA VLK+ Sbjct: 357 LVAPPEALEYIASRISTNIRELEGALIRVTAFASLNRQTVDIELAEHVLKDL 408 >gi|332709094|ref|ZP_08429063.1| chromosomal replication initiator protein DnaA [Lyngbya majuscula 3L] gi|332352145|gb|EGJ31716.1| chromosomal replication initiator protein DnaA [Lyngbya majuscula 3L] Length = 460 Score = 104 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 43/253 (16%), Positives = 85/253 (33%), Gaps = 40/253 (15%) Query: 7 DYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGIS----RDDLLVHSAIEQAVRLIDSWPSW 62 D+S+ P + + K + PR ++ +V A + + Sbjct: 94 DFSWSFPVATNHSENTFKNQ------PRRAKLNPKHVFSRFVVGPNNRMAHAASLAVGEY 147 Query: 63 PSRV---VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDS 102 P R + L G G GK+ L +++ + S I + Sbjct: 148 PGREFNPLFLCGGVGLGKTHLMQAIGHYRLDNNPDSKIFYVSTEQFTNDLISAIREDSIQ 207 Query: 103 ILID---TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156 + T + +L++DI ++ + + FH N++H+ +++ + P Sbjct: 208 SFREHYRTAEVLLVDDIQFIEGKEYTQEEFFHTFNTLHEAGKQIVLASDRPPNQINSLEE 267 Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---RSLV-FA 212 LCSR + I PD + ++ K D I + + YI R L Sbjct: 268 RLCSRFSMGLIADIQPPDLETRMAILQKKAEDENIRLPHDVVEYIAASYTSNIRELEGAL 327 Query: 213 EKLVDKMDNLALS 225 + V + L+ Sbjct: 328 TRAVTYISIAGLA 340 >gi|307149946|ref|YP_003885330.1| chromosomal replication initiator protein DnaA [Cyanothece sp. PCC 7822] gi|306980174|gb|ADN12055.1| chromosomal replication initiator protein DnaA [Cyanothece sp. PCC 7822] Length = 454 Score = 104 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 30/210 (14%), Positives = 70/210 (33%), Gaps = 26/210 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWS------ 85 + +V A + P R + L G G GK+ L + Sbjct: 114 NPKYTFSRFVVGPNNRLAHAATLAVAESPGREFNPLFLCGGVGLGKTHLMQAIAHYRLEM 173 Query: 86 -----------DKSRSTRFSNIAKSLDSILID---TRKPVLLEDIDLLDFND---TQLFH 128 ++ + + I + + T +L++DI ++ + + FH Sbjct: 174 YPDSKVFYVSTEQFTNDLIAAIRQDSLQSFREHYRTADILLVDDIQFIEGKEYTQEEFFH 233 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H+ +++ + P L SR + I +PD + ++ K Sbjct: 234 TFNTLHEAGKQVVIASDRPPKQIPTLQDRLISRFSMGLIADIQVPDLETRMAILQKKAEY 293 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218 + + +++ YI ++ E + + Sbjct: 294 ENMRLPREVIEYIATHYTSNIRELEGALIR 323 >gi|226942152|ref|YP_002797226.1| DnaA [Laribacter hongkongensis HLHK9] gi|254777904|sp|C1D6I2|DNAA_LARHH RecName: Full=Chromosomal replication initiator protein DnaA gi|226717079|gb|ACO76217.1| DnaA [Laribacter hongkongensis HLHK9] Length = 481 Score = 104 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 33/234 (14%), Positives = 79/234 (33%), Gaps = 27/234 (11%) Query: 35 CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN-------- 82 + + L+ A+++ D+ + G G GK+ L Sbjct: 146 NPAFTFESLVTGKGNQLARAAALQIADNPGDSTYNPFFVYGGVGLGKTHLIQAIGNHVYQ 205 Query: 83 ---------IWSDKSRSTRFSNIAKSLDSILID---TRKPVLLEDIDLLDFND---TQLF 127 I +++ + + +L++DI + + F Sbjct: 206 KNPQAKIRYIHAERYVADIMRAYQHKAFDEFKRYYHSLDLLLIDDIQFFAGKNRTMEEFF 265 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 + N++ + ++MT ++P L SR V+I P+ + +++K Sbjct: 266 YAFNALLEGGKQVIMTCDSYPKQIEGMDERLISRFSWGLTVEIQPPELEMRVAILMKKAE 325 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + + +A +I Q + ++ E + ++ + I+ L E LK+ Sbjct: 326 ADNLKLGNDVAFFIAQNVRSNVRELEGALKRVVAYSRFSNQPISLDLVKEALKD 379 >gi|56798246|dbj|BAD82889.1| DnaA [Burkholderia multivorans] Length = 524 Score = 104 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 33/234 (14%), Positives = 85/234 (36%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87 ++ D+ + A + A P + L G G GK+ L + ++ Sbjct: 190 NPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLD 249 Query: 88 --SRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128 R+ + + + ++ + +L++DI + F+ Sbjct: 250 KPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 309 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + +++T+ T+P L SR + V I P+ + ++++ Sbjct: 310 AFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQS 369 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + +A ++ + + ++ E + K+ + G I+ L E LK+ Sbjct: 370 EGVNLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREISIELTKEALKDL 423 >gi|189499001|ref|YP_001958471.1| chromosomal replication initiation protein [Chlorobium phaeobacteroides BS1] gi|189494442|gb|ACE02990.1| chromosomal replication initiator protein DnaA [Chlorobium phaeobacteroides BS1] Length = 491 Score = 104 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 37/235 (15%), Positives = 80/235 (34%), Gaps = 29/235 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLANIWSDKSRS 90 + D L+ A S P +++ G G GK+ + + R Sbjct: 153 NPKYTFDTLIRGDCNSLAFAASKSVSQNPGQNAFNPLVIYGGVGLGKTHMMQAVGNHVRE 212 Query: 91 TRFSN--IAKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLF 127 + S + S + ID + +++DI + ++F Sbjct: 213 SHRSEYVLYVSSEKFAIDFVNAIQNGKIQEFSSFYRKMDVLIIDDIQFFAGKEKTQEEIF 272 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 HI N++HQ + +++++ L SR I PD + + +I Sbjct: 273 HIFNTLHQSNKQIILSSDRPIKEIRGIEERLISRFNWGLSADIQPPDYETRKAIIQSKLE 332 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEK-LVDKMDNLALSRGMGITRSLAAEVLKE 241 + +D+ + +I + +++ E +V + + +L I LK+ Sbjct: 333 QSGVTLDESVVEFIATNVTQNVREIEGCIVKLLASHSLFNQ-EIDLQFTKMTLKD 386 >gi|310817279|ref|YP_003949637.1| chromosomal replication initiator protein DnaA [Stigmatella aurantiaca DW4/3-1] gi|309390351|gb|ADO67810.1| Chromosomal replication initiator protein DnaA [Stigmatella aurantiaca DW4/3-1] Length = 450 Score = 104 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 39/236 (16%), Positives = 91/236 (38%), Gaps = 31/236 (13%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLAN-----IWSD 86 + +V + + + P + + G +G GK+ L + IW + Sbjct: 116 SPRFTFGTFVVADSNQLPAAAAAAVADKPGHHYNPLYIYGGTGLGKTHLLHAVGNLIW-E 174 Query: 87 KSRSTRFSNIAKS-----------------LDSILIDTRKPVLLEDIDLLDFNDT---QL 126 ++ + R ++ D +L++DI L + + Sbjct: 175 RNPAQRVVYLSSEQFTNEYVESVREHRMTEFRRKFRDECDVLLIDDIQFLGKREETQKEF 234 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 F+ N++++ + ++++T+ T P L SR + I P + ++ K Sbjct: 235 FYTFNTLYEQNKAIVLTSDTVPSEIPGLEDRLRSRFAMGLLTDIREPSYETRVAILQKKA 294 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN-LALSRGMGITRSLAAEVLKE 241 + + +A +I + +++++ E + K+ +LSR +T AA+VLK+ Sbjct: 295 EAEGLGLPDDVAHFIAKHIQKNVRELEGALVKLSAIHSLSRL-PVTVEFAAQVLKD 349 >gi|74316019|ref|YP_313759.1| chromosomal replication initiator protein DnaA [Thiobacillus denitrificans ATCC 25259] gi|74055514|gb|AAZ95954.1| chromosomal replication initiator protein, DnaA [Thiobacillus denitrificans ATCC 25259] Length = 457 Score = 104 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 40/234 (17%), Positives = 87/234 (37%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDKSR-- 89 G + D+ + A + A P + + G G GK+ L + R Sbjct: 123 NPGFTFDNFVSGRANQLARAAALQIAENPGVAYNPLFVYGGVGLGKTHLLQAIGNTVRQT 182 Query: 90 --STRFS--NIAKSLDSILID--------------TRKPVLLEDIDLLDFND---TQLFH 128 + R S + +D ++ + +L++DI L D + F+ Sbjct: 183 NPAARISYIHANDYVDDVVKAYLNKQFDDLKRRYMSLDLLLIDDIQFLAKKDRTQEEFFY 242 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 + NS+ + +++T TFP L SR V + P+ + +++ Sbjct: 243 VFNSLIENKKQIVITCDTFPKEISGLDDRLKSRFAWGLTVAVEPPELEMRVAILLAKARA 302 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + +D+ +A +I +++ ++ E + ++ + IT L E L++ Sbjct: 303 ESVTLDENVAFFIAKQVRSNVRELEGALKRVIAFSRFHEKPITMELVKEALRDL 356 >gi|300213940|gb|ADJ78356.1| Chromosomal replication initiator protein dnaA [Lactobacillus salivarius CECT 5713] Length = 446 Score = 104 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 43/245 (17%), Positives = 82/245 (33%), Gaps = 32/245 (13%) Query: 24 KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCL 80 KE QL + D +V + A + P + G G GK+ L Sbjct: 114 KETQL------NDRYTFDTFVVGKGNQLAHAAALAVAEEPGVFYNPLFFYGGVGLGKTHL 167 Query: 81 ANIWSDKSRSTRFSNIAKSLDSILID--------------------TRKPVLLEDIDLLD 120 + + R K + S + +L++DI Sbjct: 168 MHAIGHQMLENRPDAKVKYVTSESFANDFISSIQTKRQEEFRREYRSVDLLLVDDIQFFA 227 Query: 121 ---FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 + FH N+++ +++++ P L SR K V I+ PD + Sbjct: 228 DKVGTQEEFFHTFNALYDDKKQIVLSSDRLPNEIPKLQQRLVSRFKWGLSVDITPPDFET 287 Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237 ++ + I +YI +++ ++ E + +++ + I+ SLAAE Sbjct: 288 RIAILRNKAEAEHVSIPDDTLSYIAGQIDSNIRELEGALMRVEAFSSMTRTPISTSLAAE 347 Query: 238 VLKET 242 LK Sbjct: 348 ALKNL 352 >gi|307256022|ref|ZP_07537810.1| Chromosomal replication initiator protein dnaA [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306865444|gb|EFM97339.1| Chromosomal replication initiator protein dnaA [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 451 Score = 104 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 36/242 (14%), Positives = 89/242 (36%), Gaps = 31/242 (12%) Query: 30 FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLANIWS 85 F ++ ++ + + + A + P L G +G GK+ L + Sbjct: 111 FRTGLNESLTFENFVQGKSNQLAKAVAQQVADNPGESHCNPFSLYGGTGLGKTHLLHAVG 170 Query: 86 D-------KSRSTRFSNIAKSLDSILIDTRKPV-------------LLEDIDLLD---FN 122 + ++R + D + + +++DI + Sbjct: 171 NEILKRNPQARVVYIHSERFVQDMVKALKGNTIENFKKFYRSLDVLMIDDIQFFANKEAS 230 Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 + FH NS+ + + +++ + FP + + SRL I P+ + ++ Sbjct: 231 QEEFFHTFNSLFERNKQIILASDNFPKNIENIEERIKSRLSWGVSTAIEPPELETRVAIL 290 Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR--GMGITRSLAAEVLK 240 +K +R + + +++A +I Q++ ++ E ++++ +A IT E LK Sbjct: 291 MKKAEERGVELPEEVAFFIGQKLRTNVRELEGALNRV--IAWRNFTKRQITIDAVREALK 348 Query: 241 ET 242 + Sbjct: 349 DL 350 >gi|307253756|ref|ZP_07535610.1| Chromosomal replication initiator protein dnaA [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258213|ref|ZP_07539956.1| Chromosomal replication initiator protein dnaA [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307260451|ref|ZP_07542146.1| Chromosomal replication initiator protein dnaA [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306863240|gb|EFM95180.1| Chromosomal replication initiator protein dnaA [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867673|gb|EFM99518.1| Chromosomal replication initiator protein dnaA [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306869854|gb|EFN01636.1| Chromosomal replication initiator protein dnaA [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 451 Score = 104 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 36/242 (14%), Positives = 89/242 (36%), Gaps = 31/242 (12%) Query: 30 FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLANIWS 85 F ++ ++ + + + A + P L G +G GK+ L + Sbjct: 111 FRTGLNESLTFENFVQGKSNQLAKAVAQQVADNPGESHCNPFSLYGGTGLGKTHLLHAVG 170 Query: 86 D-------KSRSTRFSNIAKSLDSILIDTRKPV-------------LLEDIDLLD---FN 122 + ++R + D + + +++DI + Sbjct: 171 NEILKRNPQARVVYIHSERFVQDMVKALKGNTIENFKKFYRSLDVLMIDDIQFFANKEAS 230 Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 + FH NS+ + + +++ + FP + + SRL I P+ + ++ Sbjct: 231 QEEFFHTFNSLFERNKQIILASDNFPKNIENIEERIKSRLSWGVSTAIEPPELETRVAIL 290 Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR--GMGITRSLAAEVLK 240 +K +R + + +++A +I Q++ ++ E ++++ +A IT E LK Sbjct: 291 MKKAEERGVELPEEVAFFIGQKLRTNVRELEGALNRV--IAWRNFTKRQITIDAVREALK 348 Query: 241 ET 242 + Sbjct: 349 DL 350 >gi|307249123|ref|ZP_07531130.1| Chromosomal replication initiator protein dnaA [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306854411|gb|EFM86607.1| Chromosomal replication initiator protein dnaA [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 451 Score = 104 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 36/242 (14%), Positives = 89/242 (36%), Gaps = 31/242 (12%) Query: 30 FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLANIWS 85 F ++ ++ + + + A + P L G +G GK+ L + Sbjct: 111 FRTGLNESLTFENFVQGKSNQLAKAVAQQVADNPGESHCNPFSLYGGTGLGKTHLLHAVG 170 Query: 86 D-------KSRSTRFSNIAKSLDSILIDTRKPV-------------LLEDIDLLD---FN 122 + ++R + D + + +++DI + Sbjct: 171 NEILKRNPQARVVYIHSERFVQDMVKALKGNTIENFKKFYRSLDVLMIDDIQFFANKEAS 230 Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 + FH NS+ + + +++ + FP + + SRL I P+ + ++ Sbjct: 231 QEEFFHTFNSLFERNKQIILASDNFPKNIENIEERIKSRLSWGVSTAIEPPELETRVAIL 290 Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR--GMGITRSLAAEVLK 240 +K +R + + +++A +I Q++ ++ E ++++ +A IT E LK Sbjct: 291 MKKAEERGVELPEEVAFFIGQKLRTNVRELEGALNRV--IAWRNFTKRQITIDAVREALK 348 Query: 241 ET 242 + Sbjct: 349 DL 350 >gi|307244802|ref|ZP_07526901.1| Chromosomal replication initiator protein dnaA [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307251522|ref|ZP_07533429.1| Chromosomal replication initiator protein dnaA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306854247|gb|EFM86453.1| Chromosomal replication initiator protein dnaA [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306860986|gb|EFM92992.1| Chromosomal replication initiator protein dnaA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 451 Score = 104 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 36/242 (14%), Positives = 89/242 (36%), Gaps = 31/242 (12%) Query: 30 FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLANIWS 85 F ++ ++ + + + A + P L G +G GK+ L + Sbjct: 111 FRTGLNESLTFENFVQGKSNQLAKAVAQQVADNPGESHCNPFSLYGGTGLGKTHLLHAVG 170 Query: 86 D-------KSRSTRFSNIAKSLDSILIDTRKPV-------------LLEDIDLLD---FN 122 + ++R + D + + +++DI + Sbjct: 171 NEILKRNPQARVVYIHSERFVQDMVKALKGNTIENFKKFYRSLDVLMIDDIQFFANKEAS 230 Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 + FH NS+ + + +++ + FP + + SRL I P+ + ++ Sbjct: 231 QEEFFHTFNSLFERNKQIILASDNFPKNIENIEERIKSRLSWGVSTAIEPPELETRVAIL 290 Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR--GMGITRSLAAEVLK 240 +K +R + + +++A +I Q++ ++ E ++++ +A IT E LK Sbjct: 291 MKKAEERGVELPEEVAFFIGQKLRTNVRELEGALNRV--IAWRNFTKRQITIDAVREALK 348 Query: 241 ET 242 + Sbjct: 349 DL 350 >gi|303250480|ref|ZP_07336677.1| chromosomal replication initiator protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650468|gb|EFL80627.1| chromosomal replication initiator protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 447 Score = 104 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 36/242 (14%), Positives = 89/242 (36%), Gaps = 31/242 (12%) Query: 30 FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLANIWS 85 F ++ ++ + + + A + P L G +G GK+ L + Sbjct: 107 FRTGLNESLTFENFVQGKSNQLAKAVAQQVADNPGESHCNPFSLYGGTGLGKTHLLHAVG 166 Query: 86 D-------KSRSTRFSNIAKSLDSILIDTRKPV-------------LLEDIDLLD---FN 122 + ++R + D + + +++DI + Sbjct: 167 NEILKRNPQARVVYIHSERFVQDMVKALKGNTIENFKKFYRSLDVLMIDDIQFFANKEAS 226 Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 + FH NS+ + + +++ + FP + + SRL I P+ + ++ Sbjct: 227 QEEFFHTFNSLFERNKQIILASDNFPKNIENIEERIKSRLSWGVSTAIEPPELETRVAIL 286 Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR--GMGITRSLAAEVLK 240 +K +R + + +++A +I Q++ ++ E ++++ +A IT E LK Sbjct: 287 MKKAEERGVELPEEVAFFIGQKLRTNVRELEGALNRV--IAWRNFTKRQITIDAVREALK 344 Query: 241 ET 242 + Sbjct: 345 DL 346 >gi|303251822|ref|ZP_07337993.1| chromosomal replication initiator protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302649252|gb|EFL79437.1| chromosomal replication initiator protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] Length = 447 Score = 104 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 36/242 (14%), Positives = 89/242 (36%), Gaps = 31/242 (12%) Query: 30 FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLANIWS 85 F ++ ++ + + + A + P L G +G GK+ L + Sbjct: 107 FRTGLNESLTFENFVQGKSNQLAKAVAQQVADNPGESHCNPFSLYGGTGLGKTHLLHAVG 166 Query: 86 D-------KSRSTRFSNIAKSLDSILIDTRKPV-------------LLEDIDLLD---FN 122 + ++R + D + + +++DI + Sbjct: 167 NEILKRNPQARVVYIHSERFVQDMVKALKGNTIENFKKFYRSLDVLMIDDIQFFANKEAS 226 Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 + FH NS+ + + +++ + FP + + SRL I P+ + ++ Sbjct: 227 QEEFFHTFNSLFERNKQIILASDNFPKNIENIEERIKSRLSWGVSTAIEPPELETRVAIL 286 Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR--GMGITRSLAAEVLK 240 +K +R + + +++A +I Q++ ++ E ++++ +A IT E LK Sbjct: 287 MKKAEERGVELPEEVAFFIGQKLRTNVRELEGALNRV--IAWRNFTKRQITIDAVREALK 344 Query: 241 ET 242 + Sbjct: 345 DL 346 >gi|190149270|ref|YP_001967795.1| chromosomal replication initiator protein [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|189914401|gb|ACE60653.1| chromosomal replication initiator protein [Actinobacillus pleuropneumoniae serovar 7 str. AP76] Length = 494 Score = 104 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 36/242 (14%), Positives = 89/242 (36%), Gaps = 31/242 (12%) Query: 30 FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLANIWS 85 F ++ ++ + + + A + P L G +G GK+ L + Sbjct: 154 FRTGLNESLTFENFVQGKSNQLAKAVAQQVADNPGESHCNPFSLYGGTGLGKTHLLHAVG 213 Query: 86 D-------KSRSTRFSNIAKSLDSILIDTRKPV-------------LLEDIDLLD---FN 122 + ++R + D + + +++DI + Sbjct: 214 NEILKRNPQARVVYIHSERFVQDMVKALKGNTIENFKKFYRSLDVLMIDDIQFFANKEAS 273 Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 + FH NS+ + + +++ + FP + + SRL I P+ + ++ Sbjct: 274 QEEFFHTFNSLFERNKQIILASDNFPKNIENIEERIKSRLSWGVSTAIEPPELETRVAIL 333 Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR--GMGITRSLAAEVLK 240 +K +R + + +++A +I Q++ ++ E ++++ +A IT E LK Sbjct: 334 MKKAEERGVELPEEVAFFIGQKLRTNVRELEGALNRV--IAWRNFTKRQITIDAVREALK 391 Query: 241 ET 242 + Sbjct: 392 DL 393 >gi|126207489|ref|YP_001052714.1| chromosomal replication initiation protein [Actinobacillus pleuropneumoniae L20] gi|126096281|gb|ABN73109.1| chromosomal replication initiator protein [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 494 Score = 104 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 36/242 (14%), Positives = 89/242 (36%), Gaps = 31/242 (12%) Query: 30 FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLANIWS 85 F ++ ++ + + + A + P L G +G GK+ L + Sbjct: 154 FRTGLNESLTFENFVQGKSNQLAKAVAQQVADNPGESHCNPFSLYGGTGLGKTHLLHAVG 213 Query: 86 D-------KSRSTRFSNIAKSLDSILIDTRKPV-------------LLEDIDLLD---FN 122 + ++R + D + + +++DI + Sbjct: 214 NEILKRNPQARVVYIHSERFVQDMVKALKGNTIENFKKFYRSLDVLMIDDIQFFANKEAS 273 Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 + FH NS+ + + +++ + FP + + SRL I P+ + ++ Sbjct: 274 QEEFFHTFNSLFERNKQIILASDNFPKNIENIEERIKSRLSWGVSTAIEPPELETRVAIL 333 Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR--GMGITRSLAAEVLK 240 +K +R + + +++A +I Q++ ++ E ++++ +A IT E LK Sbjct: 334 MKKAEERGVELPEEVAFFIGQKLRTNVRELEGALNRV--IAWRNFTKRQITIDAVREALK 391 Query: 241 ET 242 + Sbjct: 392 DL 393 >gi|53729134|ref|ZP_00134100.2| COG0593: ATPase involved in DNA replication initiation [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307249200|ref|ZP_07531197.1| Chromosomal replication initiator protein dnaA [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307262581|ref|ZP_07544212.1| Chromosomal replication initiator protein dnaA [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|306858724|gb|EFM90783.1| Chromosomal replication initiator protein dnaA [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306872079|gb|EFN03792.1| Chromosomal replication initiator protein dnaA [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 451 Score = 104 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 36/242 (14%), Positives = 89/242 (36%), Gaps = 31/242 (12%) Query: 30 FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLANIWS 85 F ++ ++ + + + A + P L G +G GK+ L + Sbjct: 111 FRTGLNESLTFENFVQGKSNQLAKAVAQQVADNPGESHCNPFSLYGGTGLGKTHLLHAVG 170 Query: 86 D-------KSRSTRFSNIAKSLDSILIDTRKPV-------------LLEDIDLLD---FN 122 + ++R + D + + +++DI + Sbjct: 171 NEILKRNPQARVVYIHSERFVQDMVKALKGNTIENFKKFYRSLDVLMIDDIQFFANKEAS 230 Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 + FH NS+ + + +++ + FP + + SRL I P+ + ++ Sbjct: 231 QEEFFHTFNSLFERNKQIILASDNFPKNIENIEERIKSRLSWGVSTAIEPPELETRVAIL 290 Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR--GMGITRSLAAEVLK 240 +K +R + + +++A +I Q++ ++ E ++++ +A IT E LK Sbjct: 291 MKKAEERGVELPEEVAFFIGQKLRTNVRELEGALNRV--IAWRNFTKRQITIDAVREALK 348 Query: 241 ET 242 + Sbjct: 349 DL 350 >gi|291547605|emb|CBL20713.1| chromosomal replication initiator protein DnaA [Ruminococcus sp. SR1/5] Length = 455 Score = 104 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 43/241 (17%), Positives = 87/241 (36%), Gaps = 29/241 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLAN-----IWSD 86 + D +V S + A + P + + G +G GK+ L + I Sbjct: 115 NPKYTFDTFVVGSNNKFAQAAALAVAESPGDTYNPLFIYGGAGLGKTHLMHSIAHFILEH 174 Query: 87 KSRSTRFSNIAKSLDSILIDTRK------------------PVLLEDIDLLDFND---TQ 125 S ++ + LI+T + +L++DI + + + Sbjct: 175 DENSRVLYVTSEEFTNELIETIRNGNNTAMSKFREKYRNIDVLLVDDIQFIIGKESTQEE 234 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 FH NS+H +++++ P + SR + + I+LPD + ++ K Sbjct: 235 FFHTFNSLHSAKKQIIISSDKPPKDMEILEERFRSRFEWGLIADITLPDYETRMAILHKN 294 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 I + + YI ++ ++ E +K+ A +T LA + LK+ Sbjct: 295 EEMNGYNISEDVIKYIATNIKSNIRELEGAFNKVMAGAKLEKKEVTLELAEQALKDIISP 354 Query: 246 D 246 D Sbjct: 355 D 355 >gi|220905644|ref|YP_002480955.1| chromosomal replication initiation protein [Cyanothece sp. PCC 7425] gi|254777899|sp|B8HRT5|DNAA_CYAP4 RecName: Full=Chromosomal replication initiator protein DnaA gi|219862255|gb|ACL42594.1| chromosomal replication initiator protein DnaA [Cyanothece sp. PCC 7425] Length = 460 Score = 104 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 47/264 (17%), Positives = 86/264 (32%), Gaps = 37/264 (14%) Query: 7 DYSFFVPDKQKNDQPKNKEEQLFF-SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSR 65 D F P +N P ++ SR +V A + P R Sbjct: 94 DLGFAFPPLFRNPSPAPAPQRERMSDLNPKYVFSR--YVVGPNNRMAHAACLAVAESPGR 151 Query: 66 V---VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILI 105 + L G G GK+ L +++ + + I K Sbjct: 152 EFNPLFLCGGVGLGKTHLMQAIGHYRLEICPDSKIFYVSTEQFTNDLIAAIRKDSMQSFR 211 Query: 106 DTRKPV---LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC 159 + + V L++DI ++ + + FH N++H+ +++ + P LC Sbjct: 212 EHYRAVDVMLVDDIQFIEGKEYTQEEFFHTFNTLHEAGKQVVLASDRPPSQIPRLQERLC 271 Query: 160 SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---RSLV-FAEKL 215 SR + I PD + ++ K I + +++ YI R L + Sbjct: 272 SRFSMGLIADIQPPDLETRMAILQKKAEYENIRLPREVIEYIASSYTSNIRELEGALIRA 331 Query: 216 VDKMDNLALSRGMGITRSLAAEVL 239 V + G+ +T A VL Sbjct: 332 VAYIS----ISGLPMTVENIAPVL 351 >gi|81251088|gb|ABB69887.1| DNA replication initiator protein [Nitrosovibrio sp. FJI82] gi|81251092|gb|ABB69890.1| DNA replication initiator protein [Nitrosovibrio sp. RY3C] Length = 460 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 33/234 (14%), Positives = 83/234 (35%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGPSGSGKSCLANIW------S 85 + D + A + A + P + + G G GK+ L Sbjct: 126 NPAFTFDSFVTGKANQLARAGAIQVAERPGVAYNPLFIYGGVGLGKTHLIQAIGNLVLEQ 185 Query: 86 DKSRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128 + R+ + + + ++ + +L++DI + F+ Sbjct: 186 NSQAKVRYIHAEQYVSDVVRAYQHKAFDDFKQYYHSLDLLLIDDIQFFGGKSRTQEEFFY 245 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++ + +++T ++P L SR V + P+ + +++K Sbjct: 246 AFNALIEAHKQVIITCDSYPKEISGMEERLVSRFGWGLTVAVEPPELEMRVAILLKKAQL 305 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +I +D+ +A +I + + ++ E + ++ + ++ LA E LK+ Sbjct: 306 EKIELDESVAFFIAKHIRSNVRELEGALKRVLAYSRFTNHPLSLDLAKEALKDL 359 >gi|90960991|ref|YP_534907.1| chromosomal replication initiation protein [Lactobacillus salivarius UCC118] gi|227891669|ref|ZP_04009474.1| DNA-directed DNA replication initiator protein [Lactobacillus salivarius ATCC 11741] gi|301300472|ref|ZP_07206671.1| chromosomal replication initiator protein DnaA [Lactobacillus salivarius ACS-116-V-Col5a] gi|90820185|gb|ABD98824.1| Chromosomal replication initiation protein [Lactobacillus salivarius UCC118] gi|227866472|gb|EEJ73893.1| DNA-directed DNA replication initiator protein [Lactobacillus salivarius ATCC 11741] gi|300851919|gb|EFK79604.1| chromosomal replication initiator protein DnaA [Lactobacillus salivarius ACS-116-V-Col5a] Length = 454 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 43/245 (17%), Positives = 82/245 (33%), Gaps = 32/245 (13%) Query: 24 KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCL 80 KE QL + D +V + A + P + G G GK+ L Sbjct: 114 KETQL------NDRYTFDTFVVGKGNQLAHAAALAVAEEPGVFYNPLFFYGGVGLGKTHL 167 Query: 81 ANIWSDKSRSTRFSNIAKSLDSILID--------------------TRKPVLLEDIDLLD 120 + + R K + S + +L++DI Sbjct: 168 MHAIGHQMLENRPDAKVKYVTSESFANDFISSIQTKRQEEFRREYRSVDLLLVDDIQFFA 227 Query: 121 ---FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 + FH N+++ +++++ P L SR K V I+ PD + Sbjct: 228 DKVGTQEEFFHTFNALYDDKKQIVLSSDRLPNEIPKLQQRLVSRFKWGLSVDITPPDFET 287 Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237 ++ + I +YI +++ ++ E + +++ + I+ SLAAE Sbjct: 288 RIAILRNKAEAEHVSIPDDTLSYIAGQIDSNIRELEGALMRVEAFSSMTRTPISTSLAAE 347 Query: 238 VLKET 242 LK Sbjct: 348 ALKNL 352 >gi|58697378|ref|ZP_00372705.1| chromosomal replication initiator protein DnaA [Wolbachia endosymbiont of Drosophila simulans] gi|58536223|gb|EAL59777.1| chromosomal replication initiator protein DnaA [Wolbachia endosymbiont of Drosophila simulans] Length = 345 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 37/236 (15%), Positives = 85/236 (36%), Gaps = 30/236 (12%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVV-----ILVGPSGSGKSCLANIWS-- 85 P + D+ +V E A ++ L G G GK+ L + + Sbjct: 8 PLDPRFTFDNFVVGKPNELAFTAAKRVAESIDPILGSNPLFLYGGVGLGKTHLMHAIAWH 67 Query: 86 ------DKSRSTRFSN--------IAKSLDSILI-----DTRKPVLLEDIDLLDFND--- 123 K + S A I++ + ++++D+ + D Sbjct: 68 IVNSPSAKRKVVYLSAEKFMYQYITALRSKDIMLFKEQFRSVDVLMVDDVQFISGKDSTQ 127 Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 + FH N++ + L+++A P + SRL V I+ + ++ Sbjct: 128 EEFFHTFNALIDQNKQLVISADRSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQ 187 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 +++ K + ++ + ++ ++ E ++K+ + +L G +T A+E L Sbjct: 188 AKVEQMNMYVPKDVLEFLARNIKSNIRELEGALNKVTHTSLI-GRSMTVESASETL 242 >gi|283782562|ref|YP_003373316.1| chromosomal replication initiator protein DnaA [Gardnerella vaginalis 409-05] gi|298253031|ref|ZP_06976823.1| chromosomal replication initiator protein DnaA [Gardnerella vaginalis 5-1] gi|283442037|gb|ADB14503.1| chromosomal replication initiator protein DnaA [Gardnerella vaginalis 409-05] gi|297532426|gb|EFH71312.1| chromosomal replication initiator protein DnaA [Gardnerella vaginalis 5-1] Length = 539 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 41/238 (17%), Positives = 87/238 (36%), Gaps = 31/238 (13%) Query: 40 RDDLLVHSAIEQAVRLIDSWPSWPSR---VVILVGPSGSGKSCLANIWS------DKSRS 90 D + + A + + R + + G SG GK+ L N D S Sbjct: 199 FDTFVPGDSNRFARTVALAVAEGSGRDFNPLCIYGGSGLGKTHLLNAIGNYALVKDSSLK 258 Query: 91 TRFSNIAKSLDSILIDTRKP-------------------VLLEDIDLLDFNDTQL---FH 128 R+ + + + + P +L++DI L + L FH Sbjct: 259 VRYVTSEEFTNEFIEALQTPNQSQGQIADFNRRYREVDVLLIDDIQFLGGKEATLEQFFH 318 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 NS++Q + +++ + P + L SR ++ V I PD + ++ M + Sbjct: 319 TFNSLYQANKRIVIASDVAPKNLKGFEARLISRFESGLTVDIKPPDLETRIAILRMMASM 378 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + + I +R ++ E + ++ +A ++++LA + L++ D Sbjct: 379 NHCNVPSDVLDLIAERFTENIRELEGALTRVTAVASLSNQPVSKALAEQALQDFFATD 436 >gi|313671971|ref|YP_004050082.1| chromosomal replication initiator protein dnaa [Calditerrivibrio nitroreducens DSM 19672] gi|312938727|gb|ADR17919.1| chromosomal replication initiator protein DnaA [Calditerrivibrio nitroreducens DSM 19672] Length = 443 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 37/232 (15%), Positives = 88/232 (37%), Gaps = 29/232 (12%) Query: 38 ISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK------ 87 + D+ +V S+ A+ + + + + + G G GK+ L + +K Sbjct: 111 YTFDNFVVGSSNQFPHAAALAVAEGYFQ-TYNPLFIYGGVGLGKTHLMHAIGNKILEKFP 169 Query: 88 ------------SRSTRFSNIAKSLDSILIDTRK--PVLLEDIDLLDF---NDTQLFHII 130 + ++ +K++D R +L +D+ L + + F+ Sbjct: 170 KLKILYISSEAFTNEMIYALKSKTMDIFREKYRNIDLLLFDDVQFLAGKTRSTEEFFYTF 229 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 NS++ +++T+ P L SR V I P D +I+K Sbjct: 230 NSLYDMQKQIVLTSDKEPNEIPDLEERLRSRFSWGLVADIQPPSVDEKVAIILKRSEIMN 289 Query: 191 IFIDKKLAAYIVQRMERS-LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 I++ ++A ++ + ++ + + +++ + IT LA + L++ Sbjct: 290 IYVSNEVAHFLAENLKGDNIRDLIGALIRLNAFSTFHNEPITIELAKKALEK 341 >gi|237753474|ref|ZP_04583954.1| chromosomal replication initiator protein dnaA [Helicobacter winghamensis ATCC BAA-430] gi|229375741|gb|EEO25832.1| chromosomal replication initiator protein dnaA [Helicobacter winghamensis ATCC BAA-430] Length = 434 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 38/256 (14%), Positives = 95/256 (37%), Gaps = 29/256 (11%) Query: 13 PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW---PSWPSRVVIL 69 P+K+K+++ +++ + + +V ++ A + + S +++ Sbjct: 82 PNKKKDNKANIRKQNTASNL--NPSFTFTSFIVGNSNTFAFNVAKAVAQNQSTSYNPLVI 139 Query: 70 VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID------------------TRKPV 111 G +G GK+ L N + + + I + + L D + Sbjct: 140 YGNTGLGKTHLLNAIGNANIIVGKNVIYTTSEQFLNDFLLHIRNNTMDRFREKYRACDYL 199 Query: 112 LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168 L++DI L D + FH N + + +++T+ P L +R + + Sbjct: 200 LIDDIQFLSGKDQIQEEFFHTFNELKENHKQIVLTSDRPPKDMNGLEERLKTRFTSGLLA 259 Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL--SR 226 I P+ + +I I + + +I + ++ E ++ K++ ++ + Sbjct: 260 DIQPPELETKINIIRAKCELDGIHLSDSIINFIAANINDNIREIEGVLVKLN-FSMNVTN 318 Query: 227 GMGITRSLAAEVLKET 242 I+ ++LKE Sbjct: 319 IQEISLDFVKDILKEY 334 >gi|254780033|ref|YP_003058140.1| chromosomal replication initiation protein [Helicobacter pylori B38] gi|254001946|emb|CAX30203.1| Chromosomal replication initiator protein DnaA [Helicobacter pylori B38] Length = 455 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 84/235 (35%), Gaps = 24/235 (10%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS 90 + ++ +V S + P V+ G +G GK+ + N + + Sbjct: 108 VKDSYTFENFVVGSCNNTVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALE 167 Query: 91 TRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFN---DTQLFHI 129 + + + L D K + LL+D L + + FH Sbjct: 168 KHKKVVLVTSEDFLTDFLKHLDNKTMDSFKAKYRHCDFFLLDDAQFLQGKPKLEEEFFHT 227 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N +H +++ + P + L SR + K+ PD + ++ + Sbjct: 228 FNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKCQLN 287 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 QI + +++ YI Q + ++ E + K+ A I +LA VL++ Q+ Sbjct: 288 QIILPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNAPIDLNLAKTVLEDLQK 342 >gi|218437014|ref|YP_002375343.1| chromosomal replication initiation protein [Cyanothece sp. PCC 7424] gi|226735799|sp|B7K7Y7|DNAA_CYAP7 RecName: Full=Chromosomal replication initiator protein DnaA gi|218169742|gb|ACK68475.1| chromosomal replication initiator protein DnaA [Cyanothece sp. PCC 7424] Length = 453 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 31/210 (14%), Positives = 71/210 (33%), Gaps = 26/210 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWS------ 85 + +V S A + P R + L G G GK+ L + Sbjct: 113 NPKYTFSRFVVGSNNRLAHAATLAVAESPGREFNPLFLCGGVGLGKTHLMQAIAHYRLQM 172 Query: 86 -----------DKSRSTRFSNIAKSLDSILID---TRKPVLLEDIDLLDFND---TQLFH 128 ++ + + I + + T +L++DI ++ + + FH Sbjct: 173 YPDSKVFYVSTEQFTNDLITAIRQDSLQSFREHYRTADILLVDDIQFIEGKEYTQEEFFH 232 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H+ +++ + P L SR + I +PD + ++ K Sbjct: 233 TFNTLHEAGKQVVIASDRPPKQIPTLEDRLISRFSMGLIADIQVPDLETRMAILQKKAEY 292 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218 + + +++ YI ++ E + + Sbjct: 293 ENMRLPREVIEYIATHYTSNIRELEGALIR 322 >gi|50953926|ref|YP_061214.1| chromosomal replication initiator protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|61212563|sp|Q6AHN6|DNAA_LEIXX RecName: Full=Chromosomal replication initiator protein DnaA gi|50950408|gb|AAT88109.1| chromosomal replication initiator protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 473 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 38/258 (14%), Positives = 87/258 (33%), Gaps = 32/258 (12%) Query: 11 FVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVV 67 P + P+N + +L S D+ ++ + A + P+ + Sbjct: 117 VAPPAEITAPPRNGDTRL------NSKYSFDNFVIGQSNRFAHAAAVAVAEAPAKAYNPL 170 Query: 68 ILVGPSGSGKSCLANIWSDKSRSTR--------------------FSNIAKSLDSILIDT 107 + G SG GK+ L + + S +N S Sbjct: 171 FIYGDSGLGKTHLLHAIGHYAMSLYPGIRVRYVSSEEFTNDFINSIANNRGSSFQARYRN 230 Query: 108 RKPVLLEDID---LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164 +L++DI FH N++H ++ +++T+ P + SR + Sbjct: 231 IDILLIDDIQFLQRAVETQEAFFHTFNTLHDHNKQVVITSDLPPKHLTGFEDRMRSRFEW 290 Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 + + +PD + ++ K +I + + ++ ++ ++ E + ++ A Sbjct: 291 GLITDVQVPDLETRIAILRKKAQSEKIQVPDDILEFMASKISSNIRELEGTLIRVTAFAS 350 Query: 225 SRGMGITRSLAAEVLKET 242 + L VLK+ Sbjct: 351 LNRTPVDMPLVQTVLKDL 368 >gi|294786219|ref|ZP_06751473.1| DNA-directed DNA replication initiator protein [Parascardovia denticolens F0305] gi|294485052|gb|EFG32686.1| DNA-directed DNA replication initiator protein [Parascardovia denticolens F0305] Length = 531 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 40/243 (16%), Positives = 84/243 (34%), Gaps = 31/243 (12%) Query: 35 CLGISRDDLLVHSAIE----QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW------ 84 + D + ++ AV + +S + + + G SG GK+ L N Sbjct: 186 NPFATFDTFVQGTSNRFAKSAAVMVAESPGTVDYNPLFIYGESGLGKTHLLNAIGNYVLR 245 Query: 85 -----------SDKSRSTRFSNIAKSLDSILIDTR--------KPVLLEDIDLLDFND-- 123 +++ + S +A +LL+DI ++ Sbjct: 246 QDPTMIVRYVTAEEFVNDFVSALAAGARKQAALANFTKKYRNVDVLLLDDIQFFRGSETM 305 Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 Q FH N + +++ + P L +R VV ++ P+ D ++ Sbjct: 306 EQFFHTFNELVSTGKQIVIASDVAPNHLKGFNERLRTRFNNGLVVDVAPPEKDTRLAILR 365 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 ++ I + + YI ++ S+ E + ++ +A +T SLA + L + Sbjct: 366 LKASNSNIEVPADVLDYIADKITDSVRELEGALTRVTAIATLNNQPVTHSLAEQTLHDFF 425 Query: 244 QCD 246 D Sbjct: 426 NSD 428 >gi|165975458|ref|YP_001651051.1| chromosomal replication initiation protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165875559|gb|ABY68607.1| chromosomal replication initiator protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 494 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 38/242 (15%), Positives = 92/242 (38%), Gaps = 31/242 (12%) Query: 30 FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLAN--- 82 F ++ ++ + + + A + P L G +G GK+ L + Sbjct: 154 FRTGLNESLTFENFVQGKSNQLAKAVAQQVADNPGESHCNPFSLYGGTGLGKTHLLHAVG 213 Query: 83 --IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND---------- 123 I ++ ++ ++ K +E+ +D+L +D Sbjct: 214 NEILKRNPQARVVYIHSERFVQDMVKALKGNTIENFKKFYRSLDVLMIDDIQFFSNKEAS 273 Query: 124 -TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 + FH NS+ + + +++ + FP + + SRL I P+ + ++ Sbjct: 274 QEEFFHTFNSLFERNKQIILASDNFPKNIENIEERIKSRLSWGVSTAIEPPELETRVAIL 333 Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR--GMGITRSLAAEVLK 240 +K +R + + +++A +I Q++ ++ E ++++ +A IT E LK Sbjct: 334 MKKAEERGVELPEEVAFFIGQKLRTNVRELEGALNRV--IAWRNFTKRQITIDAVREALK 391 Query: 241 ET 242 + Sbjct: 392 DL 393 >gi|239624133|ref|ZP_04667164.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239520519|gb|EEQ60385.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 456 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 39/208 (18%), Positives = 77/208 (37%), Gaps = 26/208 (12%) Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSD-----KSRSTRFSNIAKSLDSILIDT------- 107 P + + G G GK+ L + + S +++ + LID Sbjct: 145 PGEIYNPLFIYGGVGLGKTHLMHAIAHFILKNNPSSKILYVTSETFTNELIDAIRNKNNI 204 Query: 108 -----------RKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 +L++DI + + + FH N++++ +++++ P Sbjct: 205 TTTEFREKYRNNDVLLIDDIQFIIGKESTQEEFFHTFNTLYESKKQIIISSDKPPKEIET 264 Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213 L SR + V I PD + ++ K ID ++ YI ++ ++ E Sbjct: 265 LEERLRSRFEWGLTVDIQSPDYETRMAILRKKEEMEGYNIDNEVIKYIATNIKSNIRELE 324 Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKE 241 + K+ L+ IT LA E LK+ Sbjct: 325 GALTKIVALSRLNKCDITLELAEEALKD 352 >gi|308235533|ref|ZP_07666270.1| chromosomal replication initiation protein [Gardnerella vaginalis ATCC 14018] gi|311114014|ref|YP_003985235.1| DNA-directed DNA replication initiator protein [Gardnerella vaginalis ATCC 14019] gi|310945508|gb|ADP38212.1| DNA-directed DNA replication initiator protein [Gardnerella vaginalis ATCC 14019] Length = 535 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 39/238 (16%), Positives = 86/238 (36%), Gaps = 31/238 (13%) Query: 40 RDDLLVHSAIEQAVRLIDSWPSWPSR---VVILVGPSGSGKSCLANIWS------DKSRS 90 D + + A + + R + + G SG GK+ L N D S Sbjct: 197 FDTFVPGDSNRFARTVALAVAEGSGRDFNPLCIYGGSGLGKTHLLNAIGNYALVKDSSLK 256 Query: 91 TRFSNIAKSLDSILIDTRKP-------------------VLLEDIDLLDFNDTQL---FH 128 R+ + + + + +L++DI L + L FH Sbjct: 257 VRYITSEEFTNEFIEALQNTSQNQGQIANFNRRYREVDVLLIDDIQFLGGKEATLEQFFH 316 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N+++Q + +++ + P + L SR ++ V I PD + ++ M + Sbjct: 317 TFNALYQANKRIVIASDVAPKNLRGFESRLISRFESGLTVDIKPPDLETRIAILRMMASM 376 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + + I +R ++ E + ++ +A ++++LA + L++ D Sbjct: 377 NGSNVPSDVLDLIAERFTENIRELEGALTRVTAVASLSNQPVSKALAEQALQDFFASD 434 >gi|33152000|ref|NP_873353.1| chromosomal replication initiator protein [Haemophilus ducreyi 35000HP] gi|61212729|sp|Q7VMW1|DNAA_HAEDU RecName: Full=Chromosomal replication initiator protein DnaA gi|33148222|gb|AAP95742.1| chromosomal replication initiator protein [Haemophilus ducreyi 35000HP] Length = 448 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 39/263 (14%), Positives = 91/263 (34%), Gaps = 33/263 (12%) Query: 13 PDKQKNDQPKNKEEQLFFSFPRCLGIS------RDDLLVHSAIEQAVRLIDSWPSWPS-- 64 P +Q +E+L D+ + + + A + P Sbjct: 85 PTEQNLSASSTNKEELTQDTVHKFKTGLNGRLTFDNFVQGKSNQLAKAVAQQVADNPGES 144 Query: 65 --RVVILVGPSGSGKSCLANIWSD-------KSRSTRFSNIAKSLDSILIDTRKPV---- 111 L G +G GK+ L + + ++R + D + + Sbjct: 145 HCNPFSLYGGTGLGKTHLLHAVGNEILKRNPQARVVYIHSERFVQDMVKALKNNTIENFK 204 Query: 112 ---------LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC 159 +++DI + + FH NS+ + + +++ + FP + + Sbjct: 205 KFYRSLDVLMIDDIQFFAKKEASQEEFFHTFNSLFERNKQIILASDHFPKNIENIEERIK 264 Query: 160 SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 SRL I P+ + +++K +R + + +++A Y+ Q++ ++ E ++++ Sbjct: 265 SRLNWGVSTAIEPPELETRVAILMKKAEERNVELPEEVAFYLGQKLRTNVRELEGAINRV 324 Query: 220 DNLALSRGMGITRSLAAEVLKET 242 IT E LK+ Sbjct: 325 SAWCNFTKRQITIDAVRETLKDL 347 >gi|328949541|ref|YP_004366876.1| Chromosomal replication initiator protein dnaA [Marinithermus hydrothermalis DSM 14884] gi|328449865|gb|AEB10766.1| Chromosomal replication initiator protein dnaA [Marinithermus hydrothermalis DSM 14884] Length = 448 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 92/235 (39%), Gaps = 28/235 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91 + ++ +V + A + P R + + G G GK+ L + + Sbjct: 115 NPKYTFENFVVGANNNMAHAAALAVAESPGRAYNPLFIYGGVGLGKTHLMHA-VGHYVAQ 173 Query: 92 RFSNI------AKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLF 127 RF ++ ++ + LI+ + +L++DI + + + F Sbjct: 174 RFPHLKIEYVSTETFTNELINAIREDKMSEFRERYRSVDLLLVDDIQFIAGKERTQEEFF 233 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++++ +++++ P L SR + + I P+ + ++ Sbjct: 234 HTFNALYEAHKQIILSSDRPPKDILTLESRLRSRFEWGLITDIQPPELETRIAILKMNAE 293 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 R I I +++ YI +++ ++ E + ++ A G+ IT+ +AA L + Sbjct: 294 YRGISIPEEVLEYIARQITSNIRELEGALMRLIAYASLNGVEITKQVAARALSDV 348 >gi|291541862|emb|CBL14972.1| chromosomal replication initiator protein DnaA [Ruminococcus bromii L2-63] Length = 452 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 37/239 (15%), Positives = 85/239 (35%), Gaps = 30/239 (12%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDKSRS---- 90 + D +V S+ + A + + PS + L G SG GK+ L ++ + Sbjct: 118 YTFDTFIVGSSNKFAHAACLAVATNPSHAYNPLFLYGNSGLGKTHLLYAIGNEIKKNDPS 177 Query: 91 -----TRFSNIAKSLDSILIDT-----------RKPVLLEDIDLLDFND---TQLFHIIN 131 + + L L +L++D+ + + + FH N Sbjct: 178 KVICYIKGDDFTVELVESLRLAKMNEFRQKYRQADILLVDDVQFIGGKESTQEEFFHTFN 237 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 +++ +++T+ P L SR + + I PD + +I + + Sbjct: 238 ALYDARKQIVLTSDRPPKEIKTLEDRLRSRFEQDLIADIQPPDLETRIAIIKRKAELDGV 297 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS----LAAEVLKETQQCD 246 I ++ Y+ +++ ++ E V K+ G T + + +++L + Sbjct: 298 EISDEVCEYVASKIKANIRQLEGTVKKIKAKYYLDGEKPTINSVQGIISDILNNDAPPE 356 >gi|83642915|ref|YP_431350.1| chromosomal replication initiation protein [Hahella chejuensis KCTC 2396] gi|123767560|sp|Q2SQZ9|DNAA_HAHCH RecName: Full=Chromosomal replication initiator protein DnaA gi|83630958|gb|ABC26925.1| chromosomal replication initiator protein DnaA [Hahella chejuensis KCTC 2396] Length = 467 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 78/234 (33%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86 + + + + + A P + L G G GK+ L I+ Sbjct: 133 NPTFTFETFVEGKSNQLARAAAMQVADNPGSAYNPLFLYGGVGLGKTHLMQAVGNAIFKK 192 Query: 87 KSRSTRFSNIAKSLDSILIDT---------------RKPVLLEDIDLLDFND---TQLFH 128 + ++ + ++ +L++DI + + FH Sbjct: 193 NPNAKILYLHSERFVADMVKALQLNAFNEFKRLYRSVDALLIDDIQFFARKERSQEEFFH 252 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++ + +++T +P L SR V + P+ + +++K Sbjct: 253 TFNALLEGGQQMILTCDRYPKEIDHMEERLKSRFGWGLTVMVEPPELETRVAILMKKAEQ 312 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + A +I Q++ ++ E + + A G IT + E LK+ Sbjct: 313 ANVHLSSESAFFIAQKIRSNVRELEGALKLVIANAHFTGQEITPAFIRECLKDL 366 >gi|170780463|ref|YP_001708795.1| chromosomal replication initiation protein [Clavibacter michiganensis subsp. sepedonicus] gi|189044633|sp|B0RH69|DNAA_CLAMS RecName: Full=Chromosomal replication initiator protein DnaA gi|169155031|emb|CAQ00127.1| chromosomal replication initiator protein DnaA [Clavibacter michiganensis subsp. sepedonicus] Length = 476 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 36/234 (15%), Positives = 80/234 (34%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91 D ++ + A + P+ + + G SG GK+ L + + S Sbjct: 134 NPKYGFDTFVIGGSNRFAHAAAVAVAEAPAKAYNPLFIYGDSGLGKTHLLHAIGHYAISL 193 Query: 92 R--------------------FSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLFH 128 +N SL +L++DI L D FH Sbjct: 194 YPGIRVRYVSSEEFTNDFINSIANNRSSLFQSRYRDNDILLIDDIQFLQGKDSTQEAFFH 253 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H ++ +++T+ P + SR + + + PD + ++ K Sbjct: 254 TFNTLHDHNKQVVITSDLPPKHLTGFEDRMRSRFEWGLITDVQAPDLETRIAILRKKAQS 313 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ + + Y+ ++ ++ E + ++ A + +L VLK+ Sbjct: 314 EKLQVPDDILEYMATKVTSNIRELEGTLIRVTAFASLNKTPVDLALVQTVLKDL 367 >gi|152981050|ref|YP_001351691.1| chromosomal replication initiation protein [Janthinobacterium sp. Marseille] gi|166214676|sp|A6STW2|DNAA_JANMA RecName: Full=Chromosomal replication initiator protein DnaA gi|151281127|gb|ABR89537.1| chromosomal replication initiator protein DnaA [Janthinobacterium sp. Marseille] Length = 460 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 34/257 (13%), Positives = 91/257 (35%), Gaps = 32/257 (12%) Query: 12 VPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVI 68 +P + P+ + ++ ++ D + A + A + P + Sbjct: 109 IPSNATDHTPRRDQSRI------NTALTFDSFVTGKANQLARAAAIQVANNPGSSYNPLF 162 Query: 69 LVGPSGSGKSCLANIWSDKSRS------TRFSNIAKSLDSILID--------------TR 108 L G G GK+ L + ++ + R+ + + + ++ + Sbjct: 163 LYGGVGLGKTHLIHAIGNQVLADNPDVKIRYIHAEQYVRDVVTAYQRKGFDDFKRYYHSL 222 Query: 109 KPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 +L++DI + F+ ++ +++T+ T+P L SR + Sbjct: 223 DLLLIDDIQFFGGKSRTQEEFFYAFEALIAAKKQIIITSDTYPKEITGMDDRLISRFDSG 282 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 V + P+ + +++K + +A ++ + + ++ E + K+ + Sbjct: 283 LTVAVEPPELEMRVAILLKKAVQEGVTFSDDVAFFVAKHLRSNVRELEGALRKILAYSRF 342 Query: 226 RGMGITRSLAAEVLKET 242 G IT + + LK+ Sbjct: 343 HGKDITIEVVKDALKDL 359 >gi|325270017|ref|ZP_08136625.1| DNA-directed DNA replication initiator protein DnaA [Prevotella multiformis DSM 16608] gi|324987602|gb|EGC19577.1| DNA-directed DNA replication initiator protein DnaA [Prevotella multiformis DSM 16608] Length = 468 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 33/253 (13%), Positives = 84/253 (33%), Gaps = 33/253 (13%) Query: 21 PKNKEEQLFFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSG 76 P++ + QL S + + + + + + + + + GPSG G Sbjct: 123 PQDIDSQL------DPHKSFGNYVEGDSNKLPRSIGLSIAEHPNTTQFNPMFIYGPSGCG 176 Query: 77 KSCLANIWSDKSRSTRFSNIAKSLDSILID--------------------TRKPVLLEDI 116 K+ L N +++ + + L T ++++DI Sbjct: 177 KTHLINAIGLRTKQLYPQKRVLYVSARLFQVQYTDSVRQNTTNDFINFYQTIDVLIVDDI 236 Query: 117 D---LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 FHI N + + +++ + PV L +R + ++ P Sbjct: 237 QEWATATKTQDTFFHIFNHLFRNGRRIILASDRPPVDLKGMNDRLLTRFSCGLIAELEKP 296 Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233 + ++ + I + + +I + S+ + +++ + ++ + Sbjct: 297 NVQLCIDILHSKIKRDGLNIPEDVVRFIAETANGSVRDLQGVINSLLAYSVVYNSNVDMR 356 Query: 234 LAAEVLKETQQCD 246 LA V+K + D Sbjct: 357 LAERVIKRAVKID 369 >gi|298245521|ref|ZP_06969327.1| chromosomal replication initiator protein DnaA [Ktedonobacter racemifer DSM 44963] gi|297553002|gb|EFH86867.1| chromosomal replication initiator protein DnaA [Ktedonobacter racemifer DSM 44963] Length = 536 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 36/232 (15%), Positives = 82/232 (35%), Gaps = 26/232 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91 + D +V + + A + P R+ + L G G GK+ L + + Sbjct: 197 NSRYTFDAFIVGKSNQLAHAASLAASENPGRIYNPLFLYGGVGLGKTHLLHAVGHEGEVK 256 Query: 92 RFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDF---NDTQLFHII 130 + + + + + + L++DI + + + FH Sbjct: 257 GLTVLYVTSEKFTNEIINAIRYQKTEEFRAKYRQIDILLVDDIQFIAGKESTEEEFFHTF 316 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 NS+H + +++T+ P + L D L SR + + + P+ + ++ Sbjct: 317 NSLHNANKQIVVTSDRPPKAIH-SLQDRLRSRFEWGLLADVQPPEYEHRLAILRSKTDLL 375 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + + Y+ + S+ E ++++ A IT LA + L+ Sbjct: 376 HFSVPSAVVEYVARPECSSVRELEGALNRVIAYATLHNAPITVQLATDALEN 427 >gi|294790224|ref|ZP_06755382.1| DNA-directed DNA replication initiator protein [Scardovia inopinata F0304] gi|294458121|gb|EFG26474.1| DNA-directed DNA replication initiator protein [Scardovia inopinata F0304] Length = 572 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 37/243 (15%), Positives = 86/243 (35%), Gaps = 31/243 (12%) Query: 35 CLGISRDDLLVHSAIE----QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW------ 84 + D + ++ AV + ++ + + + G SG GK+ L N Sbjct: 229 NPFATFDTFVQGTSNRFAKSAAVIVAEAPGTADYNPLFIYGGSGLGKTHLLNAIGNYVLQ 288 Query: 85 -----------SDKSRSTRFSNIAKSLDSILIDTR--------KPVLLEDIDLLDFND-- 123 +++ + S +A +LL+DI ++ Sbjct: 289 QDPTMTVRYVTAEEFVNDFVSALAAGARKQAALANFTKKYRNVDVLLLDDIQFFRGSETM 348 Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 Q FH N + +++ + P + L +R VV ++ P+ + ++ Sbjct: 349 EQFFHTFNELTSTGKQIVIASDVAPNNLKGFNERLRTRFNKGLVVDVAPPEKETRVAILR 408 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 ++ + + + YI ++ S+ E + ++ +A +TR+LA + L + Sbjct: 409 LKVSNSNLAVPDDVLDYIADKITDSVRELEGALTRVTAIATLNDQQVTRTLAEQTLHDFF 468 Query: 244 QCD 246 D Sbjct: 469 NSD 471 >gi|227889156|ref|ZP_04006961.1| DNA-directed DNA replication initiator protein [Lactobacillus johnsonii ATCC 33200] gi|227850385|gb|EEJ60471.1| DNA-directed DNA replication initiator protein [Lactobacillus johnsonii ATCC 33200] Length = 464 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 44/265 (16%), Positives = 88/265 (33%), Gaps = 35/265 (13%) Query: 13 PDKQKNDQPKNKEEQLFF---------SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP 63 P++ QP+ K Q + D + + A + P Sbjct: 98 PERLVTPQPRIKTNQEILENRRDEFAQDLQLNSKYTFDTFVQGEGNKLAAGAALAVADNP 157 Query: 64 SRV---VILVGPSGSGKSCLANIW-----SDKSRSTRFSNIAKSLDSILIDTRK------ 109 + + G G GK+ L ++K + +++ + I++ K Sbjct: 158 GSFYNPLFIFGGVGLGKTHLMQAIGHQMLAEKPHAKVVYIQSETFVNDFINSIKNKTQAE 217 Query: 110 ---------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 +L++DI + + FH +++ ++MT+ P Sbjct: 218 FRNKYRNCDLLLVDDIQFFSKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPELSER 277 Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 L SR V+I+ PD + ++ K + ID YI +++ ++ E + Sbjct: 278 LVSRFAWGLQVEITPPDLETRIAILRKKAETDGLAIDDSTLDYIASQVDTNIRELEGALV 337 Query: 218 KMDNLALSRGMGITRSLAAEVLKET 242 K+ A I LA E L + Sbjct: 338 KVQAHATIEREDINVDLAKEALADL 362 >gi|42518085|ref|NP_964015.1| chromosomal replication initiator protein DnaA [Lactobacillus johnsonii NCC 533] gi|61212661|sp|Q74M34|DNAA_LACJO RecName: Full=Chromosomal replication initiator protein DnaA gi|41582369|gb|AAS07981.1| chromosomal replication initiator protein DnaA [Lactobacillus johnsonii NCC 533] gi|329666392|gb|AEB92340.1| chromosomal replication initiator protein DnaA [Lactobacillus johnsonii DPC 6026] Length = 454 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 44/265 (16%), Positives = 88/265 (33%), Gaps = 35/265 (13%) Query: 13 PDKQKNDQPKNKEEQLFF---------SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP 63 P++ QP+ K Q + D + + A + P Sbjct: 88 PERLVTPQPRIKTNQEILENRRDEFAQDLQLNSKYTFDTFVQGEGNKLAAGAALAVADNP 147 Query: 64 SRV---VILVGPSGSGKSCLANIW-----SDKSRSTRFSNIAKSLDSILIDTRK------ 109 + + G G GK+ L ++K + +++ + I++ K Sbjct: 148 GSFYNPLFIFGGVGLGKTHLMQAIGHQMLAEKPHAKVVYIQSETFVNDFINSIKNKTQAE 207 Query: 110 ---------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 +L++DI + + FH +++ ++MT+ P Sbjct: 208 FRNKYRNCDLLLVDDIQFFSKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPELSER 267 Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 L SR V+I+ PD + ++ K + ID YI +++ ++ E + Sbjct: 268 LVSRFAWGLQVEITPPDLETRIAILRKKAETDGLAIDDSTLDYIASQVDTNIRELEGALV 327 Query: 218 KMDNLALSRGMGITRSLAAEVLKET 242 K+ A I LA E L + Sbjct: 328 KVQAHATIEREDINVDLAKEALADL 352 >gi|148271179|ref|YP_001220740.1| chromosomal replication initiation protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|166201875|sp|A5CLT3|DNAA_CLAM3 RecName: Full=Chromosomal replication initiator protein DnaA gi|147829109|emb|CAN00006.1| chromosomal replication initiator protein dnaA [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 477 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 36/234 (15%), Positives = 80/234 (34%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91 D ++ + A + P+ + + G SG GK+ L + + S Sbjct: 135 NPKYGFDTFVIGGSNRFAHAAAVAVAEAPAKAYNPLFIYGDSGLGKTHLLHAIGHYAISL 194 Query: 92 R--------------------FSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLFH 128 +N SL +L++DI L D FH Sbjct: 195 YPGIRVRYVSSEEFTNDFINSIANNRSSLFQSRYRDNDILLIDDIQFLQGKDSTQEAFFH 254 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H ++ +++T+ P + SR + + + PD + ++ K Sbjct: 255 TFNTLHDHNKQVVITSDLPPKHLTGFEDRMRSRFEWGLITDVQAPDLETRIAILRKKAQS 314 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ + + Y+ ++ ++ E + ++ A + +L VLK+ Sbjct: 315 EKLQVPDDILEYMATKVTSNIRELEGTLIRVTAFASLNKTPVDLALVQTVLKDL 368 >gi|83749733|ref|ZP_00946710.1| DnaA [Ralstonia solanacearum UW551] gi|207741915|ref|YP_002258307.1| chromosomal replication initiator protein dnaa [Ralstonia solanacearum IPO1609] gi|83723585|gb|EAP70786.1| DnaA [Ralstonia solanacearum UW551] gi|206593301|emb|CAQ60228.1| chromosomal replication initiator protein dnaa [Ralstonia solanacearum IPO1609] Length = 531 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 87/234 (37%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD----- 86 ++ D+L+ A + A + P + + L G G GK+ L + + Sbjct: 197 NPILTFDNLVTGKANQLARAAAVQVANNPGKSYNPLYLYGGVGLGKTHLIHAIGNFMLME 256 Query: 87 --KSRSTRFSNIAKSLDSILIDTRKP-------------VLLEDIDLLDF---NDTQLFH 128 ++R D + RK +L++DI + F+ Sbjct: 257 NPRARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKNRTQEEFFY 316 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + +++T+ T+P L SR + V I P+ + +++K Sbjct: 317 AFEALIANRAQVIITSDTYPKEITGIDDRLISRFDSGLTVAIEPPELEMRVAILMKKAQA 376 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + +++A ++ + + ++ E + K+ + G IT + E LK+ Sbjct: 377 ENVTVPEEVAFFVAKHLRSNVRELEGALRKILAYSNFHGKEITIEVTREALKDL 430 >gi|297243220|ref|ZP_06927155.1| chromosomal replication initiator protein DnaA [Gardnerella vaginalis AMD] gi|296888754|gb|EFH27491.1| chromosomal replication initiator protein DnaA [Gardnerella vaginalis AMD] Length = 537 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 41/238 (17%), Positives = 87/238 (36%), Gaps = 31/238 (13%) Query: 40 RDDLLVHSAIEQAVRLIDSWPSWPSR---VVILVGPSGSGKSCLANIWS------DKSRS 90 D + + A + + R + + G SG GK+ L N D S Sbjct: 197 FDTFVPGDSNRFARTVALAVAEGSGRDFNPLCIYGGSGLGKTHLLNAIGNYALVKDSSLK 256 Query: 91 TRFSNIAKSLDSILIDTRKP-------------------VLLEDIDLLDFNDTQL---FH 128 R+ + + + + P +L++DI L + L FH Sbjct: 257 VRYVTSEEFTNEFIEALQTPNQSQGQIADFNRRYREVDVLLIDDIQFLGGKEATLEQFFH 316 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 NS++Q + +++ + P + L SR ++ V I PD + ++ M + Sbjct: 317 TFNSLYQANKRIVIASDVAPKNLKGFEARLISRFESGLTVDIKPPDLETRIAILRMMASM 376 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + + I +R ++ E + ++ +A ++++LA + L++ D Sbjct: 377 NHCNVPSDVLDLIAERFTENIRELEGALTRVTAVASLSNQPVSKALAEQALQDFFATD 434 >gi|268318563|ref|YP_003292219.1| Chromosomal replication initiator protein dnaA [Lactobacillus johnsonii FI9785] gi|262396938|emb|CAX65952.1| Chromosomal replication initiator protein dnaA [Lactobacillus johnsonii FI9785] Length = 454 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 44/265 (16%), Positives = 88/265 (33%), Gaps = 35/265 (13%) Query: 13 PDKQKNDQPKNKEEQLFF---------SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP 63 P++ QP+ K Q + D + + A + P Sbjct: 88 PERLVTPQPRIKTNQEILENRRDEFAQDLQLTSKYTFDTFVQGEGNKLAAGAALAVADNP 147 Query: 64 SRV---VILVGPSGSGKSCLANIW-----SDKSRSTRFSNIAKSLDSILIDTRK------ 109 + + G G GK+ L ++K + +++ + I++ K Sbjct: 148 GSFYNPLFIFGGVGLGKTHLMQAIGHQMLAEKPHAKVVYIQSETFVNDFINSIKNKTQVE 207 Query: 110 ---------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 +L++DI + + FH +++ ++MT+ P Sbjct: 208 FRNKYRNCDLLLVDDIQFFSKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPELSER 267 Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 L SR V+I+ PD + ++ K + ID YI +++ ++ E + Sbjct: 268 LVSRFAWGLQVEITPPDLETRIAILRKKAETDGLAIDDSTLDYIASQVDTNIRELEGALV 327 Query: 218 KMDNLALSRGMGITRSLAAEVLKET 242 K+ A I LA E L + Sbjct: 328 KVQAHATIEREDINVDLAKEALADL 352 >gi|196230261|ref|ZP_03129124.1| chromosomal replication initiator protein DnaA [Chthoniobacter flavus Ellin428] gi|196225858|gb|EDY20365.1| chromosomal replication initiator protein DnaA [Chthoniobacter flavus Ellin428] Length = 464 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 35/221 (15%), Positives = 81/221 (36%), Gaps = 27/221 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86 + D +V + + A + P+R + + G G GK+ L + I S Sbjct: 128 NPRNNFDSFVVGTNNQFAHAACKAVSDAPARTYNPLFIYGGVGLGKTHLMHAIGHAILSK 187 Query: 87 KSRSTRFSNIAKSLDSILIDT---------------RKPVLLEDIDLLD---FNDTQLFH 128 + +++ + ID +L++DI L + FH Sbjct: 188 RKPGKVVYITSEAFTNEFIDAIQNNTLIKFRKRYRQADVLLIDDIQFLADKGRTQEEFFH 247 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++ +++++ P L SR + ++ PD + ++ K Sbjct: 248 TFNTLFDGHKQIVLSSDRPPSEIANLETRLVSRFEWGLTAELQAPDIETRVAILRKKAQS 307 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL-ALSRGM 228 +I +D ++ ++ R+ ++ E + ++ + +LS G Sbjct: 308 VEIQLDDEIIQFLAARIRTNVRRLEGALMRVASYVSLSHGR 348 >gi|225386353|ref|ZP_03756117.1| hypothetical protein CLOSTASPAR_00097 [Clostridium asparagiforme DSM 15981] gi|225047535|gb|EEG57781.1| hypothetical protein CLOSTASPAR_00097 [Clostridium asparagiforme DSM 15981] Length = 456 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 83/236 (35%), Gaps = 29/236 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRLID---SWPSWPSRVVILVGPSGSGKSCLANIWSD----- 86 + D +V S A P + + G G GK+ L + + Sbjct: 117 NPKYTFDTFVVGSNNNLAHAAALAVAESPGEIYNPLFIYGGVGLGKTHLMHAIAHFILKN 176 Query: 87 KSRSTRFSNIAKSLDSILIDT------------------RKPVLLEDIDLLDFND---TQ 125 S +++ + LID +L++DI + + + Sbjct: 177 TPTSKILYVSSETFTNELIDAIRNKNNITTTEFREKYRNNDVLLIDDIQFIIGKESTQEE 236 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 FH N++++ +++++ P L SR + V I PD + ++ K Sbjct: 237 FFHTFNTLYESKKQIIISSDKPPKEIETLEERLRSRFEWGLTVDIQSPDYETRMAILQKK 296 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ID ++ YI ++ ++ E + K+ L+ IT LA E LK+ Sbjct: 297 EELEGYNIDNEVIKYIATNIKSNIRELEGALTKIVALSRLNKCDITLELAEEALKD 352 >gi|56961783|ref|YP_173505.1| chromosomal replication initiation protein [Bacillus clausii KSM-K16] gi|61212498|sp|Q5WM31|DNAA_BACSK RecName: Full=Chromosomal replication initiator protein DnaA gi|56908017|dbj|BAD62544.1| chromosome replication initiator protein DnaA [Bacillus clausii KSM-K16] Length = 451 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 43/262 (16%), Positives = 93/262 (35%), Gaps = 36/262 (13%) Query: 12 VPDKQKNDQP-KNKEEQLFFSFP-RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66 +P++ P K+ Q S + + ++ S A + P+R Sbjct: 91 LPEQTPQTPPEKDVAGQSTLSQTMLNDKYTFNTFVIGSGNRFAHAASLAVAEAPARAYNP 150 Query: 67 VILVGPSGSGKSCLANIW-----SDKSRSTRFSNIAKSLDSILIDTRK------------ 109 + + G G GK+ L + + ++ + I+ + Sbjct: 151 LFIYGGVGLGKTHLMHAIGHYVMEHNPNAKVVYLSSEKFTNEFINAIRDNKAVHFRNKYR 210 Query: 110 ---PVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 +L++DI + + FH N++H+ +++++ P L SR + Sbjct: 211 NVDVLLIDDIQFIAGKIQTQEEFFHTFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFE 270 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---RSLV-FAEKLVDKM 219 + I+ PD + ++ K + I ++ YI +++ R L ++V Sbjct: 271 WGLITDITPPDLETRIAILRKKAKAENLDIPNEVMLYIANQIDTNIRELEGALIRVVA-- 328 Query: 220 DNLALSRGMGITRSLAAEVLKE 241 +L + LAAE LK+ Sbjct: 329 -YSSLINQ-DMNADLAAEALKD 348 >gi|207727478|ref|YP_002255872.1| chromosomal replication initiator DnaA [Ralstonia solanacearum MolK2] gi|206590715|emb|CAQ56327.1| chromosomal replication initiator protein dnaa [Ralstonia solanacearum MolK2] Length = 534 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 87/234 (37%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD----- 86 ++ D+L+ A + A + P + + L G G GK+ L + + Sbjct: 200 NPILTFDNLVTGKANQLARAAAVQVANNPGKSYNPLYLYGGVGLGKTHLIHAIGNFMLME 259 Query: 87 --KSRSTRFSNIAKSLDSILIDTRKP-------------VLLEDIDLLDF---NDTQLFH 128 ++R D + RK +L++DI + F+ Sbjct: 260 NPRARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKNRTQEEFFY 319 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + +++T+ T+P L SR + V I P+ + +++K Sbjct: 320 AFEALIANRAQVIITSDTYPKEITGIDDRLISRFDSGLTVAIEPPELEMRVAILMKKAQA 379 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + +++A ++ + + ++ E + K+ + G IT + E LK+ Sbjct: 380 ENVTVPEEVAFFVAKHLRSNVRELEGALRKILAYSNFHGKEITIEVTREALKDL 433 >gi|34495456|ref|NP_899671.1| chromosomal replication iniciator protein DnaA [Chromobacterium violaceum ATCC 12472] gi|61212703|sp|Q7P259|DNAA_CHRVO RecName: Full=Chromosomal replication initiator protein DnaA gi|34101312|gb|AAQ57681.1| chromosomal replication iniciator protein DnaA [Chromobacterium violaceum ATCC 12472] Length = 467 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 37/234 (15%), Positives = 87/234 (37%), Gaps = 27/234 (11%) Query: 35 CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA-----NIWS 85 + D L+ A+++ ++ + + G G GK+ L +++ Sbjct: 132 NPSFTFDTLVTGKGNQLARAAAMQIAENPGDQAYNPLFVYGGVGLGKTHLIQAIGNHVFQ 191 Query: 86 DKSRS-TRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLF 127 ++ R+ + + + I+ + +L++DI + F Sbjct: 192 KNPQAKIRYIHAERYVADIMRAYQHKAFDEFKRYYHSLDLLLIDDIQFFAGKNRTQEEFF 251 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 + N++ + ++MT ++P L SR V+I P+ + +++K Sbjct: 252 YAFNALIEGGKQVIMTCDSYPKQIEGMEERLISRFSWGLTVEIQPPELEMRVAILMKKAE 311 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 I ++ +A +I Q + ++ E + ++ A IT L E LK+ Sbjct: 312 ADSIKLEHNVAFFIAQNVRSNVRELEGALKRVVAYARFTSQNITLELVKEALKD 365 >gi|88854499|ref|ZP_01129166.1| chromosomal replication initiator protein [marine actinobacterium PHSC20C1] gi|88816307|gb|EAR26162.1| chromosomal replication initiator protein [marine actinobacterium PHSC20C1] Length = 471 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 39/256 (15%), Positives = 93/256 (36%), Gaps = 32/256 (12%) Query: 13 PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVIL 69 P + P+ + +L S D+ ++ + A + P+ + + Sbjct: 113 PTPIEQSPPRRSDSRL------NPKYSFDNFVIGGSNRFAHAAAVAVAEAPAKAYNPLFI 166 Query: 70 VGPSGSGKSCLANIWSDKSRSTR-----------------FSNIAKSLDSILIDTRKPV- 111 G SG GK+ L + + S ++IA + S+ + + Sbjct: 167 YGGSGLGKTHLLHAIGHYAESLYPGIRVRYVSSEEFTNDFINSIANNRASVFQSRYREID 226 Query: 112 --LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 L++DI L D FH N++H ++ +++T+ P + SR + Sbjct: 227 ILLIDDIQFLQGKDSTQEAFFHTFNTLHDHNKQVVITSDLPPKHLTGFEDRMRSRFEWGL 286 Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 + + PD + ++ K ++ + + ++ ++ ++ E + ++ A Sbjct: 287 ITDVQAPDLETRIAILRKKAQSEKMQVGNDILEFMASKVSSNIRELEGTLIRVTAFASLN 346 Query: 227 GMGITRSLAAEVLKET 242 + +L VLK+ Sbjct: 347 RTEVDMALVQTVLKDL 362 >gi|83855142|ref|ZP_00948672.1| chromosomal replication initiation protein [Sulfitobacter sp. NAS-14.1] gi|83941665|ref|ZP_00954127.1| chromosomal replication initiation protein [Sulfitobacter sp. EE-36] gi|83842985|gb|EAP82152.1| chromosomal replication initiation protein [Sulfitobacter sp. NAS-14.1] gi|83847485|gb|EAP85360.1| chromosomal replication initiation protein [Sulfitobacter sp. EE-36] Length = 452 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 37/244 (15%), Positives = 85/244 (34%), Gaps = 31/244 (12%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSD--K 87 P S D+ +V E A + L G G GK+ L + + + Sbjct: 111 PLDARFSFDNFVVGKPNELAHAAARRVAEGGPVTFNPLFLYGGVGLGKTHLMHAIAQELQ 170 Query: 88 SRSTRFSNIAKSLDS------------------ILIDTRKPVLLEDIDLLDFND---TQL 126 R + + S + + + ++++D+ + D + Sbjct: 171 VRKPELNVLYLSAEQFMYRFVQALRDRKMMDFKEIFRSVDVLMVDDVQFIAGKDSTQEEF 230 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV-KM 185 FH N++ + ++++A P + SRL+ VV + D + ++ K+ Sbjct: 231 FHTFNALVDQNKQIIISADRAPGEIKDLEDRVKSRLQCGLVVDLHPTDYELRLGILQNKV 290 Query: 186 FADR----QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 A R + ++ + ++ R+ ++ E + ++ A G I L + L + Sbjct: 291 EAQRKNYPGLEVEAGVLEFLAHRITTNVRVLEGALTRLFAFASLVGREINMDLTQDCLAD 350 Query: 242 TQQC 245 + Sbjct: 351 VLRA 354 >gi|313894736|ref|ZP_07828297.1| chromosomal replication initiator protein DnaA [Selenomonas sp. oral taxon 137 str. F0430] gi|312976645|gb|EFR42099.1| chromosomal replication initiator protein DnaA [Selenomonas sp. oral taxon 137 str. F0430] Length = 487 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 36/223 (16%), Positives = 72/223 (32%), Gaps = 27/223 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWP----SRVVILVGPSGSGKSCLANIWSDKSRS 90 + D + + + + + S P + + + G G GK+ L + K + Sbjct: 151 NPKYTFDAFVTGRSNQFSYAMAKSVAEAPGLPSNNPLFIYGGVGLGKTHLMHAVGHKILA 210 Query: 91 TR-----------------FSNIAKSLDSILIDTRKPV---LLEDIDLLDFN---DTQLF 127 S I K + + L++DI + F Sbjct: 211 DHPDKRVLYIASMDFTNEFISAIGKKNTDEFREKYYAIDVLLIDDIQFFSGQLQTQAEFF 270 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 + N + ++MT P L SR VV I P+ + ++ K Sbjct: 271 QMFNKLRDSGRQIIMTCDRQPQEVKGLEDRLISRFSGGVVVDIQPPEFETRMAILQKKAQ 330 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 +I I + YI R++ ++ E + ++ A + + I Sbjct: 331 SEEIDIPGDVMTYIASRVDSNIRELEGALTRLIKYASTMRLPI 373 >gi|269958921|ref|YP_003328710.1| chromosomal replication initiation protein [Anaplasma centrale str. Israel] gi|269848752|gb|ACZ49396.1| chromosomal replication initiation protein [Anaplasma centrale str. Israel] Length = 471 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 33/242 (13%), Positives = 87/242 (35%), Gaps = 28/242 (11%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIWS-- 85 P + D+ +V E A + + + L G G GK+ L + + Sbjct: 134 PLDPRFTFDNFVVGKPNELAFAAARRVAESSAPIPGSNPLFLYGGVGLGKTHLMHAIAWY 193 Query: 86 --------------DKSRSTRFSNIAKSLDSILIDTR----KPVLLEDIDLLDFND---T 124 + ++ +S D +L + ++++D+ + D Sbjct: 194 ILNSSVKRKIAYLSAEKFMYQYVTALRSKDIMLFKEQFRSVDILMVDDVQFISGKDSTQE 253 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + FH N++ + L+++A P + SRL V I+ + ++ Sbjct: 254 EFFHTFNALIDQNKQLVISADRSPSDLDGVEDRIKSRLGWGLVADINETTFELRLGILQL 313 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 + + ++ ++ + ++ ++ E ++K+ + G +T A+ +L + + Sbjct: 314 KTEKMGVHVPNEVLEFLAKNIKSNIRELEGALNKVVAHSSLVGSSVTIESASGILSDLLR 373 Query: 245 CD 246 + Sbjct: 374 AN 375 >gi|266620978|ref|ZP_06113913.1| ribosomal subunit interface protein [Clostridium hathewayi DSM 13479] gi|288867359|gb|EFC99657.1| ribosomal subunit interface protein [Clostridium hathewayi DSM 13479] Length = 308 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 38/201 (18%), Positives = 76/201 (37%), Gaps = 26/201 (12%) Query: 67 VILVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDT-------------- 107 + + G G GK+ L + I + + ++ + LID Sbjct: 3 LFIYGGVGLGKTHLMHSIGHFILKNNPNAKVLYVTSEKFTNELIDAIRNKNNFSPTEFRD 62 Query: 108 ----RKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 +L++DI + + + FH N++++ +++++ P L S Sbjct: 63 KYRTNDVLLIDDIQFIIGKESTQEEFFHTFNALYESKKQIIISSDKPPKEIETLEERLRS 122 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 R + V I PD + ++ K ID ++ YI ++ ++ E + K+ Sbjct: 123 RFEWGLTVDIQSPDYETRMAILRKKEEMEGYNIDNEVIKYIATNIKSNIRELEGALTKIV 182 Query: 221 NLALSRGMGITRSLAAEVLKE 241 L+ IT LA E LK+ Sbjct: 183 ALSRLDNKEITVELAEEALKD 203 >gi|228470045|ref|ZP_04054956.1| chromosomal replication initiator protein DnaA [Porphyromonas uenonis 60-3] gi|228308319|gb|EEK17168.1| chromosomal replication initiator protein DnaA [Porphyromonas uenonis 60-3] Length = 475 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 43/258 (16%), Positives = 93/258 (36%), Gaps = 38/258 (14%) Query: 22 KNKEEQLF-FSFPRCLGISRDDLLVHSAIEQA----VRLIDSWPSWPSRVVILVGPSGSG 76 K++ QL F +S + A + + + GPSG G Sbjct: 127 KSEPRQLPDFDSQLKPQLSFASYYQGESNRTASSIARSIAEKPGQGALNPCFIYGPSGVG 186 Query: 77 KSCLANIWSDKSRSTRFSNIAKSLDSILIDTR-------------------------KPV 111 K+ L + R + L + + + + Sbjct: 187 KTHLCHAI-----GLRIRELYPELKVLYVSSHMFEMQYVAATRANTTNDFINFYQQVDVL 241 Query: 112 LLEDID-LLDFNDTQL--FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168 L++DI L+ TQL F + N ++ +++T+ T PV+ L SR+ + + Sbjct: 242 LIDDIQGLIAKKKTQLTFFQVFNHLYMLGKQIVLTSDTAPVNLAGLEERLISRIAGSLTI 301 Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228 ++ PD D ++ + + + +++ YI + + S+ + + + A G Sbjct: 302 EVERPDYDLRKEYLRHKSEESGSILPREMIDYIARTVTSSIRGLQGVFFSLITRAAVEGC 361 Query: 229 GITRSLAAEVLKETQQCD 246 IT S +++ +T + + Sbjct: 362 DITSSFVKKIVSQTVKQE 379 >gi|67924996|ref|ZP_00518381.1| chromosomal replication initiator protein, DnaA [Crocosphaera watsonii WH 8501] gi|67853170|gb|EAM48544.1| chromosomal replication initiator protein, DnaA [Crocosphaera watsonii WH 8501] Length = 455 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 32/210 (15%), Positives = 67/210 (31%), Gaps = 26/210 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK---- 87 + +V A + P + L G G GK+ L + Sbjct: 117 NPNYNFSRFVVGPTNRMAHAASLAVSESPGREFNPLFLCGGVGLGKTHLMQAIAHYRLEL 176 Query: 88 -SRSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLLDFND---TQLFH 128 + F + + LI T +L++DI ++ + + FH Sbjct: 177 YPNANVFYVSTEQFTNDLIASIRQDSMEFFREHYRTADILLVDDIQFIEDKEYTQEEFFH 236 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H+ +++ + P L SR + I +PD + ++ K Sbjct: 237 TFNTLHEAGKQVVIASDRPPQRIPTLQDRLVSRFSMGLIADIQVPDWETRMAILQKKAEY 296 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218 I + + + YI ++ E + + Sbjct: 297 ENIRLPRDVIEYIATNYTSNIRELEGALIR 326 >gi|270307452|ref|YP_003329510.1| chromosomal replication initiator protein DnaA [Dehalococcoides sp. VS] gi|270153344|gb|ACZ61182.1| chromosomal replication initiator protein DnaA [Dehalococcoides sp. VS] Length = 444 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 38/259 (14%), Positives = 83/259 (32%), Gaps = 26/259 (10%) Query: 7 DYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV 66 + + P+ E+ F + + +V S A + P + Sbjct: 79 GFQLVQSAQVPAAAPQTAREKTVSPF--NPRYTFESFIVGSCNRLAHAASLAAAQNPGKS 136 Query: 67 ---VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN- 122 + + +G GK+ L + R + S + D + + Sbjct: 137 YNPLYIYADAGLGKTHLLQAIGHLANLNRRKALYVSGEQFTTDFISSIRNGQTEEFRARY 196 Query: 123 --------------------DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 + LFH N +H + ++++A + P S L SR Sbjct: 197 RDVDLLLLDDVQFIGGKEQTEECLFHTFNDLHNSNRQIVISADSPPKSLPQLAERLRSRF 256 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 + ++I PD+ +++ ++ Y+ Q ++ ++ E ++++ Sbjct: 257 EWGLTIEIEPPDEKTRFELLQLKAEQSGAELNMDTLEYLAQEVKHNIRELEGSLNRVLAY 316 Query: 223 ALSRGMGITRSLAAEVLKE 241 A IT LAA L + Sbjct: 317 ARLLRATITPDLAARALSD 335 >gi|299065055|emb|CBJ36216.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Ralstonia solanacearum CMR15] Length = 539 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 87/234 (37%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD----- 86 ++ D+L+ A + A + P + + L G G GK+ L + + Sbjct: 205 NPILTFDNLVTGKANQLARAAAVQVANNPGKSYNPLYLYGGVGLGKTHLIHAIGNFMLME 264 Query: 87 --KSRSTRFSNIAKSLDSILIDTRKP-------------VLLEDIDLLDF---NDTQLFH 128 ++R D + RK +L++DI + F+ Sbjct: 265 NPRARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKNRTQEEFFY 324 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + +++T+ T+P L SR + V I P+ + +++K Sbjct: 325 AFEALIANRAQVIITSDTYPKEITGIDDRLISRFDSGLTVAIEPPELEMRVAILMKKAQA 384 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + +++A ++ + + ++ E + K+ + G IT + E LK+ Sbjct: 385 ENVTVPEEVAFFVAKHLRSNVRELEGALRKILAYSNFHGKEITIEVTREALKDL 438 >gi|32266609|ref|NP_860641.1| chromosomal replication initiation protein [Helicobacter hepaticus ATCC 51449] gi|61212728|sp|Q7VH57|DNAA_HELHP RecName: Full=Chromosomal replication initiator protein DnaA gi|32262660|gb|AAP77707.1| chromosomal replication initiator protein DnaA [Helicobacter hepaticus ATCC 51449] Length = 456 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 38/236 (16%), Positives = 87/236 (36%), Gaps = 24/236 (10%) Query: 32 FPRCLGISRDDLLVHSAIEQAV---RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS 88 + ++ +V + E A +L+ + V+L G SG GK+ L N + Sbjct: 116 LSLNPFYTFENFVVGKSNEYAYTIAKLVLQQQASAYNPVLLYGKSGLGKTHLLNAIGNDV 175 Query: 89 RSTRFSNIAKSLDSILID------------------TRKPVLLEDIDLLDFND---TQLF 127 + + + + + L D +L++D+ + +L Sbjct: 176 KEKNKNVLYVTSEDFLNDYMDKIKRKTMDSFRDKYRKCDYLLIDDVQFFGGKEGIQEELL 235 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++H ++MT+ P L +R + + +I+ P+ + +I Sbjct: 236 HTFNTLHNSQKQIVMTSDKPPKEIKGLEERLRTRFEWGAMAEITNPELETKIAIIKSKCE 295 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 +I ++ ++ YI + ++ E ++ ++ + +A VLK Q Sbjct: 296 VNRIVLENEVIDYIASNIYGNIRQIEGILSTINAHINLSPESSSLKIAKNVLKNYQ 351 >gi|329113489|ref|ZP_08242270.1| Chromosomal replication initiator protein DnaA [Acetobacter pomorum DM001] gi|326697314|gb|EGE48974.1| Chromosomal replication initiator protein DnaA [Acetobacter pomorum DM001] Length = 477 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 39/265 (14%), Positives = 87/265 (32%), Gaps = 28/265 (10%) Query: 9 SFFVPDKQKNDQPKNKEEQLFFSF--PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV 66 + P +++ ++ + D +V E A PS V Sbjct: 115 NAATPAQEEATPAARTAPEVRSDLVTALDSRFTFDTFVVGKPNEFAYACARRVAEKPSSV 174 Query: 67 ----VILVGPSGSGKSCLANIW-SDKSRSTRFSNIAKSLDSILIDTRKPV---------- 111 + L G G GK+ L + ++ +S S S + + + Sbjct: 175 GFNPLFLYGGVGLGKTHLMHAIGAELIQSGNVSVAYMSAEKFMYRFIAAIRSQSTIEFKE 234 Query: 112 --------LLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 +++D+ L D + FH N++ ++++A P L + Sbjct: 235 QLRSVDVLMIDDLQFLIGKDNTQEEFFHTFNALVDAGRQIVVSADKSPSDLSGLEDRLRT 294 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 RL V I + ++ A + + K+ ++ ++ ++ E ++++ Sbjct: 295 RLGCGMVADIHATTFELRISILESKAAASGVVVPGKVLEFLAHKITSNVRELEGALNRLI 354 Query: 221 NLALSRGMGITRSLAAEVLKETQQC 245 A G +T EVL + + Sbjct: 355 AHANLFGRPVTLEATQEVLHDILKA 379 >gi|310286521|ref|YP_003937779.1| chromosomal replication initiator protein DnaA [Bifidobacterium bifidum S17] gi|309250457|gb|ADO52205.1| chromosomal replication initiator protein DnaA [Bifidobacterium bifidum S17] Length = 529 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 84/233 (36%), Gaps = 31/233 (13%) Query: 40 RDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWS------DKSRS 90 D + + A + + + + G SG GK+ L N D + Sbjct: 192 FDTFVPGDSNRFARTVALAVAEGTGQEFNPLCIYGGSGLGKTHLLNAIGNYALVKDPTLK 251 Query: 91 TRFSNIAKSLDSILIDTRKP-------------------VLLEDIDLLDFNDTQL---FH 128 R+ N + + + + P +L++DI L + L FH Sbjct: 252 VRYVNSEEFTNEFIEALQTPAQSQNRIAEFNRRYREVDVLLIDDIQFLGGKEATLEQFFH 311 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++HQ + +++ + P + L SR + V + PD + ++ M + Sbjct: 312 TFNALHQANKRIVIASDVAPKNLKGFEARLISRFDSGLTVDVKPPDLETRIAILRMMASM 371 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I +R ++ E + ++ +A +TR+LA + L++ Sbjct: 372 NGTSTPNDVLNLIAERFTENIRELEGALIRVSAVASLSSQPVTRALAEQTLQD 424 >gi|300702375|ref|YP_003743975.1| chromosomal replication initiator protein DnaA [Ralstonia solanacearum CFBP2957] gi|299070036|emb|CBJ41321.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Ralstonia solanacearum CFBP2957] Length = 525 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 87/234 (37%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD----- 86 ++ D+L+ A + A + P + + L G G GK+ L + + Sbjct: 191 NPILTFDNLVTGKANQLARAAAVQVANNPGKSYNPLYLYGGVGLGKTHLIHAIGNFMLME 250 Query: 87 --KSRSTRFSNIAKSLDSILIDTRKP-------------VLLEDIDLLDF---NDTQLFH 128 ++R D + RK +L++DI + F+ Sbjct: 251 NPRARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKNRTQEEFFY 310 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + +++T+ T+P L SR + V I P+ + +++K Sbjct: 311 AFEALIANRAQVIITSDTYPKEITGIDDRLISRFDSGLTVAIEPPELEMRVAILMKKAQA 370 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + +++A ++ + + ++ E + K+ + G IT + E LK+ Sbjct: 371 ENVTVPEEVAFFVAKHLRSNVRELEGALRKILAYSNFHGKEITIEVTREALKDL 424 >gi|260909520|ref|ZP_05916223.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] gi|260636368|gb|EEX54355.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] Length = 469 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 37/261 (14%), Positives = 91/261 (34%), Gaps = 31/261 (11%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQA----VRLIDSWPSWPSRVVIL 69 KQK ++ KE++L + + + + + + + + + + + + Sbjct: 113 AKQKTEEEPAKEQEL--DPQLNPHQTFSNYIEGDSNKLSRSVGLSIAEHPNTNQFNPMFI 170 Query: 70 VGPSGSGKSCL---------------------ANIWSDKSRSTRFSNIAKSLDSILIDTR 108 GPSG GK+ L A+++ + + N T Sbjct: 171 YGPSGCGKTHLVNAIGVQTKQLYPQKRVLYISAHLFQVQFVNAVLKNATNDF-IKFYQTI 229 Query: 109 KPVLLEDID---LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 ++++D+ D FHI N + + +++ + PV L +R Sbjct: 230 DMLIVDDVQTWASADKTQETFFHIFNHLFRNGKRIILASDRPPVELNDMSDRLITRFSCG 289 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 + ++ P+ ++ + I ++ +I + S+ E +++ + ++ Sbjct: 290 IIAELEKPNVQLCVDILNAKIRRDGLKIPAEVTQFIAETANGSVRDLEGVINSLMAYSVV 349 Query: 226 RGMGITRSLAAEVLKETQQCD 246 I LA V+K + D Sbjct: 350 YNSDIDMRLAERVIKRAVKID 370 >gi|258542326|ref|YP_003187759.1| chromosomal replication initiator protein DnaA [Acetobacter pasteurianus IFO 3283-01] gi|256633404|dbj|BAH99379.1| chromosomal replication initiator protein DnaA [Acetobacter pasteurianus IFO 3283-01] gi|256636463|dbj|BAI02432.1| chromosomal replication initiator protein DnaA [Acetobacter pasteurianus IFO 3283-03] gi|256639516|dbj|BAI05478.1| chromosomal replication initiator protein DnaA [Acetobacter pasteurianus IFO 3283-07] gi|256642572|dbj|BAI08527.1| chromosomal replication initiator protein DnaA [Acetobacter pasteurianus IFO 3283-22] gi|256645627|dbj|BAI11575.1| chromosomal replication initiator protein DnaA [Acetobacter pasteurianus IFO 3283-26] gi|256648680|dbj|BAI14621.1| chromosomal replication initiator protein DnaA [Acetobacter pasteurianus IFO 3283-32] gi|256651733|dbj|BAI17667.1| chromosomal replication initiator protein DnaA [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654724|dbj|BAI20651.1| chromosomal replication initiator protein DnaA [Acetobacter pasteurianus IFO 3283-12] Length = 477 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 39/261 (14%), Positives = 86/261 (32%), Gaps = 28/261 (10%) Query: 13 PDKQKNDQPKNKEEQLFFSF--PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---- 66 P +++ ++ + D +V E A PS V Sbjct: 119 PAQEEATPAARTAPEVRSDLVTALDSRFTFDTFVVGKPNEFAYACARRVAEKPSSVGFNP 178 Query: 67 VILVGPSGSGKSCLANIW-SDKSRSTRFSNIAKSLDSILIDTRKPV-------------- 111 + L G G GK+ L + ++ +S S S + + + Sbjct: 179 LFLYGGVGLGKTHLMHAIGAELIQSGNVSVAYMSAEKFMYRFIAAIRSQSTIEFKEQLRS 238 Query: 112 ----LLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164 +++D+ L D + FH N++ ++++A P L +RL Sbjct: 239 VDVLMIDDLQFLIGKDNTQEEFFHTFNALVDAGRQIVVSADKSPSDLSGLEDRLRTRLGC 298 Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 V I + ++ A + + K+ ++ ++ ++ E ++++ A Sbjct: 299 GMVADIHATTFELRISILESKAAASGVVVPGKVLEFLAHKITSNVRELEGALNRLIAHAN 358 Query: 225 SRGMGITRSLAAEVLKETQQC 245 G +T EVL + + Sbjct: 359 LFGRPVTLEATQEVLHDILKA 379 >gi|224283952|ref|ZP_03647274.1| ATPase for DNA replication initiation [Bifidobacterium bifidum NCIMB 41171] gi|313141104|ref|ZP_07803297.1| chromosomal replication initiator protein dnaA [Bifidobacterium bifidum NCIMB 41171] gi|313133614|gb|EFR51231.1| chromosomal replication initiator protein dnaA [Bifidobacterium bifidum NCIMB 41171] Length = 529 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 84/233 (36%), Gaps = 31/233 (13%) Query: 40 RDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWS------DKSRS 90 D + + A + + + + G SG GK+ L N D + Sbjct: 192 FDTFVPGDSNRFARTVALAVAEGTGQEFNPLCIYGGSGLGKTHLLNAIGNYALVKDPTLK 251 Query: 91 TRFSNIAKSLDSILIDTRKP-------------------VLLEDIDLLDFNDTQL---FH 128 R+ N + + + + P +L++DI L + L FH Sbjct: 252 VRYVNSEEFTNEFIEALQTPAQSQNRIAEFNRRYREVDVLLIDDIQFLGGKEATLEQFFH 311 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++HQ + +++ + P + L SR + V + PD + ++ M + Sbjct: 312 TFNALHQANKRIVIASDVAPKNLKGFEARLISRFDSGLTVDVKPPDLETRIAILRMMASM 371 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I +R ++ E + ++ +A +TR+LA + L++ Sbjct: 372 NGTSTPNDVLNLIAERFTENIRELEGALIRVSAVASLSSQPVTRALAEQTLQD 424 >gi|163733262|ref|ZP_02140706.1| chromosomal replication initiation protein [Roseobacter litoralis Och 149] gi|161393797|gb|EDQ18122.1| chromosomal replication initiation protein [Roseobacter litoralis Och 149] Length = 454 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 38/260 (14%), Positives = 86/260 (33%), Gaps = 32/260 (12%) Query: 17 KNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPS 73 + PK L + P + D+ +V E A + L G Sbjct: 98 RGAAPKTPRSGLSTA-PLDARFTFDNFIVGKPNELAHAAAKRVAEGGPVTFNPLFLYGGV 156 Query: 74 GSGKSCLANIWSDKSRSTR--FSNIAKSLDS------------------ILIDTRKPVLL 113 G GK+ L + + R R + + S + + + +++ Sbjct: 157 GLGKTHLMHAIAHDLRLRRPEINVLYLSAEQFMYRFVQALRDRKMMDFKEIFRSVDVLMV 216 Query: 114 EDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 +D+ + + FH N++ + ++++ P + SRL+ VV + Sbjct: 217 DDVQFIAGKGSTQEEFFHTFNALVDQNKQIIISGDRAPGEIKDMEERVKSRLQCGLVVDL 276 Query: 171 SLPDDDFLEKVIV-KMFADR----QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 D + ++ K+ R + I + ++ R+ ++ E + ++ A Sbjct: 277 HPTDYELRLGILQSKVEQQRKNYPGLDISDGVLEFLAHRISTNVRVLEGALTRLCAFASL 336 Query: 226 RGMGITRSLAAEVLKETQQC 245 G I L + L + + Sbjct: 337 VGREIDMELTQDCLSDVLRA 356 >gi|241661626|ref|YP_002979986.1| chromosomal replication initiation protein [Ralstonia pickettii 12D] gi|240863653|gb|ACS61314.1| chromosomal replication initiator protein DnaA [Ralstonia pickettii 12D] Length = 529 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 37/231 (16%), Positives = 86/231 (37%), Gaps = 26/231 (11%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD-------K 87 ++ D+ + A + A + P + + L G G GK+ L + + + Sbjct: 198 LTFDNFVTGKANQLARAAAIQVANNPGKSYNPLYLYGGVGLGKTHLIHAIGNFMLMENPR 257 Query: 88 SRSTRFSNIAKSLDSILIDTRKP-------------VLLEDIDLLDF---NDTQLFHIIN 131 +R D + RK +L++DI + F+ Sbjct: 258 ARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKNRTQEEFFYAFE 317 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 ++ + +++T+ T+P L SR + V I P+ + +++K + Sbjct: 318 ALIANRAQVIITSDTYPKEITGIDDRLISRFDSGLTVAIEPPELEMRVAILMKKAQAENV 377 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + +++A ++ + + ++ E + K+ + G IT + E LK+ Sbjct: 378 TVPEEVAFFVAKHLRSNVRELEGALRKILAYSNFHGKEITIEVTREALKDL 428 >gi|320531085|ref|ZP_08032114.1| replication initiator protein DnaA [Selenomonas artemidis F0399] gi|320136667|gb|EFW28620.1| replication initiator protein DnaA [Selenomonas artemidis F0399] Length = 487 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 36/223 (16%), Positives = 72/223 (32%), Gaps = 27/223 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWP----SRVVILVGPSGSGKSCLANIWSDKSRS 90 + D + + + + + S P + + + G G GK+ L + K + Sbjct: 151 NPKYTFDAFVTGRSNQFSYAMAKSVAEAPGLPSNNPLFIYGGVGLGKTHLMHAVGHKILA 210 Query: 91 TR-----------------FSNIAKSLDSILIDTRKPV---LLEDIDLLDFN---DTQLF 127 S I K + + L++DI + F Sbjct: 211 DHPDKRVLYIASMDFTNEFISAIGKKNTDEFREKYYAIDVLLIDDIQFFSGQLQTQAEFF 270 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 + N + ++MT P L SR VV I P+ + ++ K Sbjct: 271 QMFNKLRDSGRQIIMTCDRQPQEVKGLEDRLISRFSGGVVVDIQPPEFETRMAILQKKAQ 330 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 +I I + YI R++ ++ E + ++ A + + I Sbjct: 331 SEEIDIPGDVMTYIASRVDSNIRELEGALTRLIKYASTMRLPI 373 >gi|281411445|ref|YP_003345524.1| chromosomal replication initiator protein DnaA [Thermotoga naphthophila RKU-10] gi|281372548|gb|ADA66110.1| chromosomal replication initiator protein DnaA [Thermotoga naphthophila RKU-10] Length = 440 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 85/235 (36%), Gaps = 26/235 (11%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--VILVGPSGSGKSCLAN-------- 82 P + ++ +V A P R + + G G GK+ L Sbjct: 97 PLNPDYTFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQ 156 Query: 83 ---------IWSDKSRSTRFSNIAKSLDSILIDTRK----PVLLEDIDLL---DFNDTQL 126 I S+K + ++ + + + + +L++D+ L T+L Sbjct: 157 NEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKTGVQTEL 216 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH N +H +++ + P L SR + V K+ PD++ + + KM Sbjct: 217 FHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKNIARKML 276 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + +++ ++ + ++ +L + K+ + G I A +LK+ Sbjct: 277 EIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEIDLKEAILLLKD 331 >gi|297380624|gb|ADI35511.1| chromosomal replication initiator protein DnaA [Helicobacter pylori v225d] Length = 455 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 85/235 (36%), Gaps = 24/235 (10%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS 90 + ++ +V S + P V+ G +G GK+ + N + + Sbjct: 108 VKDSYTFENFVVGSCNNTVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALE 167 Query: 91 TRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFN---DTQLFHI 129 + + + L D K + LL+D L + + FH Sbjct: 168 KHKRVVLVTSEDFLTDFLKHLDNKTMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEFFHT 227 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N +H +++ + P + L SR + K+ PD + ++ + Sbjct: 228 FNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKCQLN 287 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 +I + +++ YI Q + ++ E + K++ A I +LA VL++ Q+ Sbjct: 288 KITLPEEVMEYIAQHISDNIRQMEGAIIKINVNANLMNAPIDLNLAKTVLEDLQK 342 >gi|322378946|ref|ZP_08053360.1| chromosomal replication initiation protein [Helicobacter suis HS1] gi|322379800|ref|ZP_08054097.1| chromosomal replication initiation protein [Helicobacter suis HS5] gi|321147768|gb|EFX42371.1| chromosomal replication initiation protein [Helicobacter suis HS5] gi|321148622|gb|EFX43108.1| chromosomal replication initiation protein [Helicobacter suis HS1] Length = 433 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 86/231 (37%), Gaps = 23/231 (9%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWP--SWPSRVVILVGPSGSGKSCLANIWSDKSRSTR 92 + D L+V S A+++ S V+ G G GK+ + N +K+ Sbjct: 99 NPAFTFDTLVVGSCNHLAIKVASQVAQNSGSYNPVLFFGGVGLGKTHILNAIGNKACDRL 158 Query: 93 FSNIAKSLDSILID------------------TRKPVLLEDIDLLDFND---TQLFHIIN 131 + + + L D TR +L++D+ + FH N Sbjct: 159 QDVLYVTAEQFLNDYVFRLGNHSMDKFQDKYRTRDYLLIDDVQFFGGKQMVQEEFFHTFN 218 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 ++H S ++MT+ P L SR + + I P + +I + I Sbjct: 219 ALHSQGSQIVMTSDKPPRDIKGLADRLLSRFEMGMIASIQPPKLETKIAIINQKCQFNHI 278 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +D + Y+ ++ E + +++ A+ G+ I SL VLK+T Sbjct: 279 RMDAPVVEYLASHTNENIRQIEGALLRLNATAMLTGVSIDLSLVEAVLKDT 329 >gi|16330393|ref|NP_441121.1| chromosomal replication initiation protein [Synechocystis sp. PCC 6803] gi|2506358|sp|P49995|DNAA_SYNY3 RecName: Full=Chromosomal replication initiator protein DnaA gi|1652883|dbj|BAA17801.1| chromosomal replication initiator protein; DnaA [Synechocystis sp. PCC 6803] Length = 447 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 78/231 (33%), Gaps = 28/231 (12%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD-----KS 88 + +V A + P R + L G G GK+ L + Sbjct: 110 KYTFSRFVVGPTNRMAHAASLAVAESPGREFNPLFLCGGVGLGKTHLMQAIAHYRLEMYP 169 Query: 89 RSTRFSNIAKSLDSILIDT---------------RKPVLLEDIDLLDFND---TQLFHII 130 + + + + LI +L++DI + + + FH Sbjct: 170 NAKVYYVSTERFTNDLITAIRQDNMEDFRSYYRSADFLLIDDIQFIKGKEYTQEEFFHTF 229 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 NS+H+ +++ + P L SR + I +PD + ++ K + Sbjct: 230 NSLHEAGKQVVVASDRAPQRIPGLQDRLISRFSMGLIADIQVPDLETRMAILQKKAEYDR 289 Query: 191 IFIDKKLAAYIVQRMERSLVFAE-KLVDKMDNLALSRGMGITRSLAAEVLK 240 I + K++ YI ++ E L+ + +LS + +T A VL Sbjct: 290 IRLPKEVIEYIASHYTSNIRELEGALIRAIAYTSLSN-VAMTVENIAPVLN 339 >gi|134093295|ref|YP_001098370.1| chromosomal replication initiation protein [Herminiimonas arsenicoxydans] gi|166214675|sp|A4G154|DNAA_HERAR RecName: Full=Chromosomal replication initiator protein DnaA gi|133737198|emb|CAL60241.1| Chromosomal replication initiator protein DnaA [Herminiimonas arsenicoxydans] Length = 460 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 34/257 (13%), Positives = 91/257 (35%), Gaps = 32/257 (12%) Query: 12 VPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVI 68 +P + P+ + ++ ++ D + A + A + P + Sbjct: 109 IPSNATDHTPRRDQSRI------NTALTFDSFVTGKANQLARAAAIQVANNPGSSYNPLF 162 Query: 69 LVGPSGSGKSCLANIWSDKSRS------TRFSNIAKSLDSILID--------------TR 108 L G G GK+ L + ++ + R+ + + + ++ + Sbjct: 163 LYGGVGLGKTHLIHAIGNQVLADNPNVKIRYIHAEQYVRDVVTAYQRKGFDDFKRYYHSL 222 Query: 109 KPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 +L++DI + F+ ++ +++T+ T+P L SR + Sbjct: 223 DLLLIDDIQFFGGKSRTQEEFFYAFEALIAAKKQIIITSDTYPKEITGMDDRLISRFDSG 282 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 V + P+ + +++K + +A ++ + + ++ E + K+ + Sbjct: 283 LTVAVEPPELEMRVAILLKKAVQEGVTFSDDVAFFVAKHLRSNVRELEGALRKILAYSRF 342 Query: 226 RGMGITRSLAAEVLKET 242 G IT + + LK+ Sbjct: 343 HGKDITIEVVKDALKDL 359 >gi|148543244|ref|YP_001270614.1| chromosomal replication initiation protein [Lactobacillus reuteri DSM 20016] gi|184152656|ref|YP_001840997.1| chromosomal replication initiation protein [Lactobacillus reuteri JCM 1112] gi|227364307|ref|ZP_03848400.1| DNA-directed DNA replication initiator protein [Lactobacillus reuteri MM2-3] gi|325683506|ref|ZP_08163022.1| DNA-directed DNA replication initiator protein DnaA [Lactobacillus reuteri MM4-1A] gi|167016901|sp|A5VHF3|DNAA_LACRD RecName: Full=Chromosomal replication initiator protein DnaA gi|226735822|sp|B2G4Y5|DNAA_LACRJ RecName: Full=Chromosomal replication initiator protein DnaA gi|148530278|gb|ABQ82277.1| chromosomal replication initiator protein DnaA [Lactobacillus reuteri DSM 20016] gi|183224000|dbj|BAG24517.1| chromosomal replication initiator protein DnaA [Lactobacillus reuteri JCM 1112] gi|227070620|gb|EEI08950.1| DNA-directed DNA replication initiator protein [Lactobacillus reuteri MM2-3] gi|324977856|gb|EGC14807.1| DNA-directed DNA replication initiator protein DnaA [Lactobacillus reuteri MM4-1A] Length = 440 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 51/262 (19%), Positives = 94/262 (35%), Gaps = 31/262 (11%) Query: 10 FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66 F +K+ D P E P + +V + A + P + Sbjct: 84 FTYTNKKTEDDPTPSFE---MDTPLNPHYNFGTFVVGEGNKMAHAAAFAVAESPGSLYNP 140 Query: 67 VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTRK 109 + + G G GK+ L S+ + + I + L + + Sbjct: 141 LFIYGGVGLGKTHLMEAIGNHMLQVNPNSRVKYVTSEDFTNDYINAIRNNTTEQLREEYR 200 Query: 110 ---PVLLEDIDLLD---FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRL 162 +L++DI L + F+ N++H ++MT+ P L D L SR Sbjct: 201 NLDLLLIDDIQFLANKEGTQLEFFNTFNALHDRKKQIVMTSDRIPNEIP-ELQDRLVSRF 259 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 + V+I+ PD + ++ + I I YI +++ ++ E + K+ Sbjct: 260 RWGLTVEITPPDLETRIAILRSKVEEDHIDIGNDTLNYIAGQIDTNIRELEGALTKVQAF 319 Query: 223 ALSRGMGITRSLAAEVLKETQQ 244 A G IT SLA++ LK + Sbjct: 320 ANLSGERITPSLASQALKGLHR 341 >gi|311063460|ref|YP_003970185.1| Chromosomal replication initiator protein DnaA [Bifidobacterium bifidum PRL2010] gi|310865779|gb|ADP35148.1| Chromosomal replication initiator protein DnaA [Bifidobacterium bifidum PRL2010] Length = 529 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 84/233 (36%), Gaps = 31/233 (13%) Query: 40 RDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWS------DKSRS 90 D + + A + + + + G SG GK+ L N D + Sbjct: 192 FDTFVPGDSNRFARTVALAVAEGTGQEFNPLCIYGGSGLGKTHLLNAIGNYALVKDPTLK 251 Query: 91 TRFSNIAKSLDSILIDTRKP-------------------VLLEDIDLLDFNDTQL---FH 128 R+ N + + + + P +L++DI L + L FH Sbjct: 252 VRYVNSEEFTNEFIEALQTPAQSQNRIAEFNRRYREVDVLLIDDIQFLGGKEATLEQFFH 311 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++HQ + +++ + P + L SR + V + PD + ++ M + Sbjct: 312 TFNALHQANKRIVIASDVAPKNLKGFEARLISRFDSGLTVDVKPPDLETRIAILRMMASM 371 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I +R ++ E + ++ +A +TR+LA + L++ Sbjct: 372 NGTSTPNDVLNLIAERFTENIRELEGALIRVSAVASLSSQPVTRALAEQTLQD 424 >gi|317050200|ref|YP_004111316.1| chromosomal replication initiator protein DnaA [Desulfurispirillum indicum S5] gi|316945284|gb|ADU64760.1| chromosomal replication initiator protein DnaA [Desulfurispirillum indicum S5] Length = 460 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 44/254 (17%), Positives = 97/254 (38%), Gaps = 28/254 (11%) Query: 16 QKNDQPKNKEEQLFFSFPR--CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILV 70 Q P ++E+L D +V S+ + A + + P + + Sbjct: 104 QTTPSPTQQKEKLHSDVRHILSPRYIFDSFVVGSSNQFAHAAAMAVANGPGVTYNPLFIY 163 Query: 71 GPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDTRK---------------P 110 G G GK+ L I+ D + ++ + +I+ K Sbjct: 164 GGVGLGKTHLMQAVGNAIYQDNRSAKIMYVQSEVFTNEMINALKNGKIEEFRQRYRYVDV 223 Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 +L++DI + D + FH N++H +++++ FP L SR + + Sbjct: 224 LLIDDIQFIAGKDRTQEEFFHTFNTLHGEKKQIVLSSDKFPREIPHLEERLRSRFEWGLI 283 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 I PD + ++ K +++ ++A +I + ++ ++ E ++++ A G Sbjct: 284 ADIQPPDLETKMAILRKKAESIDMYLPNEVALFIAKAIKHNIRELEGCLNRISAYAHLTG 343 Query: 228 MGITRSLAAEVLKE 241 + T + VLK+ Sbjct: 344 VEPTVDIIKNVLKD 357 >gi|194467403|ref|ZP_03073390.1| chromosomal replication initiator protein DnaA [Lactobacillus reuteri 100-23] gi|194454439|gb|EDX43336.1| chromosomal replication initiator protein DnaA [Lactobacillus reuteri 100-23] Length = 440 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 51/262 (19%), Positives = 94/262 (35%), Gaps = 31/262 (11%) Query: 10 FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66 F +K+ D P E P + +V + A + P + Sbjct: 84 FTYTNKKTEDDPTPSFE---MDTPLNPHYNFGTFVVGEGNKMAHAAAFAVAESPGSLYNP 140 Query: 67 VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTRK 109 + + G G GK+ L S+ + + I + L + + Sbjct: 141 LFIYGGVGLGKTHLMEAIGNHMLQVNPNSRVKYVTSEDFTNDYINAIRNNTTEQLREEYR 200 Query: 110 ---PVLLEDIDLLD---FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRL 162 +L++DI L + F+ N++H ++MT+ P L D L SR Sbjct: 201 NLDLLLIDDIQFLANKEGTQLEFFNTFNALHDRKKQIVMTSDRIPNEIP-ELQDRLVSRF 259 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 + V+I+ PD + ++ + I I YI +++ ++ E + K+ Sbjct: 260 RWGLTVEITPPDLETRIAILRSKVEEDHIDIGNDTLNYIAGQIDTNIRELEGALTKVQAF 319 Query: 223 ALSRGMGITRSLAAEVLKETQQ 244 A G IT SLA++ LK + Sbjct: 320 ANLSGERITPSLASQALKGLHR 341 >gi|292669293|ref|ZP_06602719.1| ATPase [Selenomonas noxia ATCC 43541] gi|292649134|gb|EFF67106.1| ATPase [Selenomonas noxia ATCC 43541] Length = 478 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 38/261 (14%), Positives = 82/261 (31%), Gaps = 43/261 (16%) Query: 13 PDKQKNDQPKNKEEQLFFSFP----------------RCLGISRDDLLVHSAIEQAVRLI 56 P K++ Q + Q + D + + + + Sbjct: 104 PTKEEPKQSADTPAQGSLPLTPTPSDTHAAAPDDATTLNPKYTFDAFVTGRSNQFPYAMA 163 Query: 57 DSWPSWPS----RVVILVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDT 107 + P + + G G GK+ L + I +D + + I + Sbjct: 164 KAVADAPGLPSHNPLFIYGGVGLGKTHLMHAVGHKILADHPDRRVLYIASTDFTNEFIRS 223 Query: 108 RK---------------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPV 149 + +L++DI + T+ F N + S +++T+ P Sbjct: 224 IREKNMDAFREKYYSIDVLLIDDIQFFAGQEQTQTEFFQTFNKLRDNGSQIILTSDRQPQ 283 Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209 L SR V I P+ + ++ K ++ I + + YI R++ ++ Sbjct: 284 DVKGLEDRLISRFAGGAPVDIQPPEFETRVAILQKKAQSEEVDIPEDVVTYIASRVDSNI 343 Query: 210 VFAEKLVDKMDNLALSRGMGI 230 E + ++ A + M I Sbjct: 344 RELEGALTRLIKYASTMRMPI 364 >gi|227543719|ref|ZP_03973768.1| DNA-directed DNA replication initiator protein [Lactobacillus reuteri CF48-3A] gi|300908784|ref|ZP_07126247.1| DNA-directed DNA replication initiator protein [Lactobacillus reuteri SD2112] gi|154705516|gb|ABS84184.1| chromosomal replication initiator protein DnaA [Lactobacillus reuteri] gi|227186287|gb|EEI66358.1| DNA-directed DNA replication initiator protein [Lactobacillus reuteri CF48-3A] gi|300894191|gb|EFK87549.1| DNA-directed DNA replication initiator protein [Lactobacillus reuteri SD2112] Length = 440 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 51/262 (19%), Positives = 94/262 (35%), Gaps = 31/262 (11%) Query: 10 FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66 F +K+ D P E P + +V + A + P + Sbjct: 84 FTYTNKKTEDDPTPSFE---MDTPLNPHYNFGTFVVGEGNKMAHAAAFAVAESPGSLYNP 140 Query: 67 VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTRK 109 + + G G GK+ L S+ + + I + L + + Sbjct: 141 LFIYGGVGLGKTHLMEAIGNHMLQVNPNSRVKYVTSEDFTNDYINAIRNNTTEQLREEYR 200 Query: 110 ---PVLLEDIDLLD---FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRL 162 +L++DI L + F+ N++H ++MT+ P L D L SR Sbjct: 201 NLDLLLIDDIQFLANKEGTQLEFFNTFNALHDRKKQIVMTSDRIPNEIP-ELQDRLVSRF 259 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 + V+I+ PD + ++ + I I YI +++ ++ E + K+ Sbjct: 260 RWGLTVEITPPDLETRIAILRSKVEEDHIDIGNDTLNYIAGQIDTNIRELEGALTKVQAF 319 Query: 223 ALSRGMGITRSLAAEVLKETQQ 244 A G IT SLA++ LK + Sbjct: 320 ANLSGERITPSLASQALKGLHR 341 >gi|322513485|ref|ZP_08066595.1| ribosomal subunit interface protein [Actinobacillus ureae ATCC 25976] gi|322120704|gb|EFX92588.1| ribosomal subunit interface protein [Actinobacillus ureae ATCC 25976] Length = 447 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 36/242 (14%), Positives = 89/242 (36%), Gaps = 31/242 (12%) Query: 30 FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLANIWS 85 F ++ ++ + + + A + P L G +G GK+ L + Sbjct: 107 FRTGLNESLTFENFVQGKSNQLAKAVAQQIADNPGESHCNPFSLYGGTGLGKTHLLHAVG 166 Query: 86 D-------KSRSTRFSNIAKSLDSILIDTRKPV-------------LLEDIDLLD---FN 122 + ++R + D + + +++DI + Sbjct: 167 NEILKRNPQARVVYIHSERFVQDMVKALKGNTIENFKKFYRSLDVLMIDDIQFFANKEAS 226 Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 + FH NS+ + + +++ + FP + + SRL I P+ + ++ Sbjct: 227 QEEFFHTFNSLFERNKQIILASDNFPKNIENIEERIKSRLSWGVSTAIEPPELETRVAIL 286 Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR--GMGITRSLAAEVLK 240 +K +R + + +++A +I Q++ ++ E ++++ +A IT E LK Sbjct: 287 MKKAEERGVELPEEVAFFIGQKLRTNVRELEGALNRV--IAWRNFTKRQITIDAVREALK 344 Query: 241 ET 242 + Sbjct: 345 DL 346 >gi|258650272|ref|YP_003199428.1| chromosomal replication initiation protein [Nakamurella multipartita DSM 44233] gi|258553497|gb|ACV76439.1| chromosomal replication initiator protein DnaA [Nakamurella multipartita DSM 44233] Length = 557 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 37/254 (14%), Positives = 95/254 (37%), Gaps = 30/254 (11%) Query: 17 KNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPS 73 + DQ Q + S + ++ ++ A + P+ + + G S Sbjct: 204 RRDQAPPNAAQSRLN----EKYSFETFVIGASNRFAHAAAVAVAEAPAVAYNPLFIWGDS 259 Query: 74 GSGKSCLANIWSDKSRS------TRFSNIAKSLDSILIDTRK--------------PVLL 113 G GK+ L + ++ R+ + + + + R +L+ Sbjct: 260 GLGKTHLLHGIGHYAQRLFPGMRVRYVSSEEFTNDFINSLRDDRKVAFQRRYRDVDVLLV 319 Query: 114 EDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 +DI L+ + + FH N+++ + +++++ P + +R + + I Sbjct: 320 DDIQFLEGKEGTQEEFFHTFNTLYNANKQIVISSDRPPKRLETLEDRMRTRFEWGLITDI 379 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 P+ + ++ K A ++ + +I R+ER++ E + ++ A + Sbjct: 380 QPPELETRIAILRKKAALDRMNAPDDVLEFIASRIERNIRELEGALIRVTAFASLNKQAV 439 Query: 231 TRSLAAEVLKETQQ 244 +LA VL++ + Sbjct: 440 DLALAQIVLRDLVR 453 >gi|302535573|ref|ZP_07287915.1| chromosomal replication initiator protein DnaA [Streptomyces sp. C] gi|302444468|gb|EFL16284.1| chromosomal replication initiator protein DnaA [Streptomyces sp. C] Length = 599 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 88/235 (37%), Gaps = 28/235 (11%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90 D ++ ++ A + P+ + + G SG GK+ L + +RS Sbjct: 261 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFVYGESGLGKTHLLHAIGHYARSL 320 Query: 91 -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128 R+ + + + + R +L++DI L + + FH Sbjct: 321 YPGTRVRYVSSEEFTNEFINSIRDGKGDAFRKRYREMDILLVDDIQFLASKESTQEEFFH 380 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 N++H + +++++ P V L D L +R + + + P+ + ++ K Sbjct: 381 TFNTLHNANKQIVLSSDRPPKQL-VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 439 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 Q+ ++ +I R+ R++ E + ++ A + L +VLK Sbjct: 440 QEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEDVLKNL 494 >gi|294630338|ref|ZP_06708898.1| chromosomal replication initiator protein DnaA [Streptomyces sp. e14] gi|292833671|gb|EFF92020.1| chromosomal replication initiator protein DnaA [Streptomyces sp. e14] Length = 643 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 88/235 (37%), Gaps = 28/235 (11%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90 D ++ ++ A + P+ + + G SG GK+ L + +RS Sbjct: 305 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSL 364 Query: 91 -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128 R+ + + + + R +L++DI L + + FH Sbjct: 365 YPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFH 424 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 N++H + +++++ P V L D L +R + + + P+ + ++ K Sbjct: 425 TFNTLHNANKQIVLSSDRPPKQL-VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 483 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 Q+ ++ +I R+ R++ E + ++ A + L VLK+ Sbjct: 484 QEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDL 538 >gi|116628684|ref|YP_813856.1| DNA replication ATPase initiation [Lactobacillus gasseri ATCC 33323] gi|116094266|gb|ABJ59418.1| DNA replication ATPase initiation [Lactobacillus gasseri ATCC 33323] Length = 464 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 43/265 (16%), Positives = 88/265 (33%), Gaps = 35/265 (13%) Query: 13 PDKQKNDQPKNKEEQLFF---------SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP 63 P++ +P+ K Q + D + + A + P Sbjct: 98 PERLVTPKPRIKTNQEILEDRRDEFAQDLQLNSKYTFDTFVQGEGNKLAAGAALAVADNP 157 Query: 64 SRV---VILVGPSGSGKSCLANIW-----SDKSRSTRFSNIAKSLDSILIDTRK------ 109 + + G G GK+ L ++K + +++ + I++ K Sbjct: 158 GSFYNPLFIFGGVGLGKTHLMQAIGHQMLAEKPHAKVVYIQSETFVNDFINSIKNKTQAE 217 Query: 110 ---------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 +L++DI + + FH +++ ++MT+ P Sbjct: 218 FRNKYRNCDLLLVDDIQFFSKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPELSER 277 Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 L SR V+I+ PD + ++ K + ID YI +++ ++ E + Sbjct: 278 LVSRFAWGLQVEITPPDLETRIAILRKKAETDGLAIDDSTLDYIASQVDTNIRELEGALV 337 Query: 218 KMDNLALSRGMGITRSLAAEVLKET 242 K+ A I LA E L + Sbjct: 338 KVQAHATIEREDINVDLAKEALADL 362 >gi|170287808|ref|YP_001738046.1| chromosomal replication initiator protein DnaA [Thermotoga sp. RQ2] gi|226735861|sp|B1LC08|DNAA_THESQ RecName: Full=Chromosomal replication initiator protein DnaA gi|170175311|gb|ACB08363.1| chromosomal replication initiator protein DnaA [Thermotoga sp. RQ2] Length = 440 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 85/235 (36%), Gaps = 26/235 (11%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--VILVGPSGSGKSCLAN-------- 82 P + ++ +V A P R + + G G GK+ L Sbjct: 97 PLNPDYTFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQ 156 Query: 83 ---------IWSDKSRSTRFSNIAKSLDSILIDTRK----PVLLEDIDLL---DFNDTQL 126 I S+K + ++ + + + + +L++D+ L T+L Sbjct: 157 NEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKTGVQTEL 216 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH N +H +++ + P L SR + V K+ PD++ + + KM Sbjct: 217 FHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKML 276 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + +++ ++ + ++ +L + K+ + G + A +LK+ Sbjct: 277 EIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKD 331 >gi|15643688|ref|NP_228734.1| chromosomal replication initiation protein [Thermotoga maritima MSB8] gi|1169366|sp|P46798|DNAA_THEMA RecName: Full=Chromosomal replication initiator protein DnaA gi|168177182|pdb|2Z4R|A Chain A, Crystal Structure Of Domain Iii From The Thermotoga Maritima Replication Initiation Protein Dnaa gi|168177183|pdb|2Z4R|B Chain B, Crystal Structure Of Domain Iii From The Thermotoga Maritima Replication Initiation Protein Dnaa gi|168177184|pdb|2Z4R|C Chain C, Crystal Structure Of Domain Iii From The Thermotoga Maritima Replication Initiation Protein Dnaa gi|168177185|pdb|2Z4S|A Chain A, Crystal Structure Of Domain Iii From The Thermotoga Maritima Replication Initiation Protein Dnaa gi|4981463|gb|AAD36007.1|AE001756_10 chromosomal replication initiator protein [Thermotoga maritima MSB8] gi|780792|gb|AAA65438.1| DnaA [Thermotoga maritima MSB8] Length = 440 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 85/235 (36%), Gaps = 26/235 (11%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--VILVGPSGSGKSCLAN-------- 82 P + ++ +V A P R + + G G GK+ L Sbjct: 97 PLNPDYTFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQ 156 Query: 83 ---------IWSDKSRSTRFSNIAKSLDSILIDTRK----PVLLEDIDLL---DFNDTQL 126 I S+K + ++ + + + + +L++D+ L T+L Sbjct: 157 NEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKTGVQTEL 216 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH N +H +++ + P L SR + V K+ PD++ + + KM Sbjct: 217 FHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKML 276 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + +++ ++ + ++ +L + K+ + G + A +LK+ Sbjct: 277 EIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKD 331 >gi|222150251|ref|YP_002559404.1| chromosomal replication initiation protein DnaA [Macrococcus caseolyticus JCSC5402] gi|254777906|sp|B9E8Z7|DNAA_MACCJ RecName: Full=Chromosomal replication initiator protein DnaA gi|222119373|dbj|BAH16708.1| chromosomal replication initiation protein DnaA [Macrococcus caseolyticus JCSC5402] Length = 445 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 39/256 (15%), Positives = 91/256 (35%), Gaps = 28/256 (10%) Query: 14 DKQKNDQPKNKEE--QLFFSFPRCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVI 68 + +K + ++ Q + D ++ S A + P+ + Sbjct: 87 NNEKEAPVRKTQQTSQELLPNQLNTDNTFDTFVIGSGNRFSHAASLAVAEAPAKAYNPLF 146 Query: 69 LVGPSGSGKSCLANIW-----SDKSRSTRFSNIAKSLDSILIDTRK-------------- 109 + G G GK+ L + K + ++ + I++ K Sbjct: 147 IYGGVGLGKTHLMHAIGHYVMEHKENAKVVYISSEKFMNEFINSIKDNKTEEFRSKYRNV 206 Query: 110 -PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 +L++DI L + + FH N +HQ +++++ P L +R + Sbjct: 207 DVLLIDDIQFLAGKESTQEEFFHTFNELHQNHKQIVISSDRAPKEIPTLEERLRTRFEWG 266 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 + ++ PD + ++ K + I I + YI +++ ++ E + ++ + Sbjct: 267 LITDVTPPDLETRIAILRKKSEEENIDIPNEAMLYIATQIQSNIRELEGALTRVSAYSKL 326 Query: 226 RGMGITRSLAAEVLKE 241 + L AE LK+ Sbjct: 327 VNRELNSDLVAEALKD 342 >gi|288959510|ref|YP_003449851.1| chromosomal replication initiator protein [Azospirillum sp. B510] gi|288911818|dbj|BAI73307.1| chromosomal replication initiator protein [Azospirillum sp. B510] Length = 505 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 34/238 (14%), Positives = 79/238 (33%), Gaps = 26/238 (10%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANI--WSDKSR 89 + ++ +V E A + + L G G GK+ L + W + Sbjct: 171 DPRFTFENFVVGKPNELAHAAARRVADATAVTFNPLFLYGGVGLGKTHLMHALAWQIRKN 230 Query: 90 STRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFH 128 + S + + + + +++D+ + D + FH Sbjct: 231 DPNRKVLYLSAEKFMYQFIRALRFKDTMAFKQQFRSVDVLMIDDVQFISGKDSTQEEFFH 290 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++ + ++++A P L SRL V I + ++ Sbjct: 291 TFNALVDQNRQVIISADKSPSDLEGMEERLRSRLGWGLVADIHPTTYELRLGILQAKADA 350 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 Q I K+ ++ ++ ++ E ++++ A G I+ EVL + + + Sbjct: 351 LQATIPLKVLEFLAHKITSNVRELEGALNRIVAHAELVGRSISLETTQEVLHDLLRAN 408 >gi|17548159|ref|NP_521561.1| chromosomal replication initiation protein [Ralstonia solanacearum GMI1000] gi|38257696|sp|Q8XTV4|DNAA_RALSO RecName: Full=Chromosomal replication initiator protein DnaA gi|17430466|emb|CAD16939.1| probable chromosomal replication initiator protein dnaa [Ralstonia solanacearum GMI1000] Length = 522 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 87/234 (37%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD----- 86 ++ D+L+ A + A + P + + L G G GK+ L + + Sbjct: 188 NPILTFDNLVTGKANQLARAAAVQVANNPGKSYNPLYLYGGVGLGKTHLIHAIGNFMLME 247 Query: 87 --KSRSTRFSNIAKSLDSILIDTRKP-------------VLLEDIDLLDF---NDTQLFH 128 ++R D + RK +L++DI + F+ Sbjct: 248 NPRARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKNRTQEEFFY 307 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + +++T+ T+P L SR + V I P+ + +++K Sbjct: 308 AFEALIANRAQVIITSDTYPKEITGIDDRLISRFDSGLTVAIEPPELEMRVAILMKKAQA 367 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + +++A ++ + + ++ E + K+ + G IT + E LK+ Sbjct: 368 ENVTVPEEVAFFVAKHLRSNVRELEGALRKILAYSNFHGKEITIEVTREALKDL 421 >gi|260593160|ref|ZP_05858618.1| DNA replication initiator protein, ATPase [Prevotella veroralis F0319] gi|260534868|gb|EEX17485.1| DNA replication initiator protein, ATPase [Prevotella veroralis F0319] Length = 468 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 33/254 (12%), Positives = 83/254 (32%), Gaps = 35/254 (13%) Query: 21 PKNKEEQLFFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSG 76 P++ + QL S + + + + + + + + + GPSG G Sbjct: 123 PQDLDSQL------DPHKSFTNYIEGDSNKLPRSIGLSIAEHPSTTQFNPMFIYGPSGCG 176 Query: 77 KSCL---------------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLED 115 K+ L A ++ + + N T ++++D Sbjct: 177 KTHLVNAIGLKVKQLYPEKRVLYVSARLFQVQYTDSVRQNTTNDF-INFYQTIDVLIVDD 235 Query: 116 ID---LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 I FHI N + + +++ + PV L +R + ++ Sbjct: 236 IQEWITATKTQDTFFHIFNHLFRNGKRIILASDRPPVDLKGMNDRLLTRFSCGLIAELEK 295 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232 P+ ++ + I + + +I + S+ + +++ + ++ + Sbjct: 296 PNVQLCVDILHNKIKRDGLSIPEDVIKFIAETANGSVRDLQGVINSLLAYSVVYNSNVDM 355 Query: 233 SLAAEVLKETQQCD 246 LA V+K + D Sbjct: 356 RLAERVIKRAVKID 369 >gi|253997714|ref|YP_003049777.1| chromosomal replication initiator protein DnaA [Methylovorus sp. SIP3-4] gi|253984393|gb|ACT49250.1| chromosomal replication initiator protein DnaA [Methylovorus sp. SIP3-4] Length = 469 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 37/234 (15%), Positives = 85/234 (36%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSD----- 86 + D+ + A + A P + + G G GK+ L + Sbjct: 135 NSAFNFDNFVTGRANQLARAAALQVAENPGTAYNPLFIYGGVGLGKTHLLQAIGNHLKMN 194 Query: 87 --------KSRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDF---NDTQLFH 128 S++ K+ + D + +L++DI + F+ Sbjct: 195 RPDAKIRYLHAERYVSDVVKAYELKAFDEFKRQYHSLDLLLIDDIQFFAKKSRTQEEFFY 254 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 NS+ + +++T T+P L +R V + P+ + +++K + Sbjct: 255 AFNSLIEAKKQIIITCDTYPKEIVDVDERLRTRFSWGLTVAVEPPELEMRVAILLKKAEE 314 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + +A +I +++ S+ E ++++ +A G I LA + LK+ Sbjct: 315 AKFVLHEDVAFFIAKQVRSSVRELEGALNRIVAMANFTGNPIDVHLAKDALKDL 368 >gi|17229501|ref|NP_486049.1| chromosomal replication initiation protein [Nostoc sp. PCC 7120] gi|38257719|sp|Q8YVG9|DNAA_NOSS1 RecName: Full=Chromosomal replication initiator protein DnaA gi|17131099|dbj|BAB73708.1| chromosomal replication initiator protein [Nostoc sp. PCC 7120] Length = 459 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 46/247 (18%), Positives = 84/247 (34%), Gaps = 36/247 (14%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSC 79 N+ Q SR +V + A + P R + L G G GK+ Sbjct: 110 NQNRQPNTELNAKYVFSR--FVVGANNRMAHAASLAVAESPGREFNPLFLCGGVGLGKTH 167 Query: 80 LANI-----WSDKSRSTRFSNIAKSLDSILI---------------DTRKPVLLEDIDLL 119 L W S F + + LI +L++DI + Sbjct: 168 LMQAIGHYRWEICPNSKIFYVSTEQFTNDLITAIRNDSMQSFREHYRAADVLLVDDIQFI 227 Query: 120 DFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 + + + FH N++H+ +++ + P LCSR + I PD + Sbjct: 228 EGKEYTQEEFFHTFNTLHEAGKQVVIASDRPPNQIPSLQERLCSRFSMGLIADIQAPDLE 287 Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR----GMGITR 232 ++ K +I + + + YI ++ E + + AL+ G+ +T Sbjct: 288 TRMAILQKKSEYEKIRLPRDVIEYIATNFTSNIRELEGALTR----ALAYISIWGLPMTV 343 Query: 233 SLAAEVL 239 + A VL Sbjct: 344 ANLAPVL 350 >gi|326567507|gb|EGE17622.1| DnaA family protein [Moraxella catarrhalis BC1] Length = 254 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 38/227 (16%), Positives = 87/227 (38%), Gaps = 18/227 (7%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 + Q + S +D S+ + ID R + +VG SG GK+ LA+ Sbjct: 2 TQAIQDSLNLDIRPEASLEDF-QSSSYHPILDAIDKLVQGSLRELFIVGDSGFGKTHLAS 60 Query: 83 IWSDKSRS------------TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLF 127 + S + + ++ ++++D+ ++ + LF Sbjct: 61 AIYEHYTSMTSKMVISLNLTELIEQDPHATALVGLEMFDLIIVDDLQMVRHSYEWQEGLF 120 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD-DFLEKVIVKMF 186 H+IN + ++ +L A + L DL +RL A ++ + DD + +I + Sbjct: 121 HLINRLREHQKQILYLADDPARELQIGLLDLHTRLSLAPMLTLPDNDDINDRRILIEVIL 180 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233 + + +++ Y+++ R+ ++D + L+R + Sbjct: 181 KKKNWKLPEEIFDYLLEEGPRNAGDINTVLDHI-RPLLTRLSRVQIP 226 >gi|260574423|ref|ZP_05842427.1| chromosomal replication initiator protein DnaA [Rhodobacter sp. SW2] gi|259023319|gb|EEW26611.1| chromosomal replication initiator protein DnaA [Rhodobacter sp. SW2] Length = 452 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 35/244 (14%), Positives = 80/244 (32%), Gaps = 31/244 (12%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDK-- 87 P + D +V E A + L G G GK+ L + + + Sbjct: 111 PLDSRFTFDSFVVGKPNELAHAAARRVAEGGPVSFNPLFLYGGVGLGKTHLMHAIAHELH 170 Query: 88 SRSTRFSNIAKSLDS------------------ILIDTRKPVLLEDIDLLDFND---TQL 126 R + S + L + ++++D+ + D + Sbjct: 171 VRQPHLRVLYLSAEQFMYRFVQALRERQIMDFKELFRSVDVLMVDDVQFIAGKDSTQEEF 230 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH N++ + ++++A P + SRL+ VV + D + ++ + Sbjct: 231 FHTFNALVDQNKQIVISADRAPGEIKDLEERIKSRLQCGLVVDLHPTDYELRLGILQQKA 290 Query: 187 ADR-----QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + + + ++ R+ ++ E + ++ A G IT L + L + Sbjct: 291 EFYRGQYPGLQLADGVVEFLAHRITTNVRVLEGALTRLFAFASLVGREITLDLTQDCLAD 350 Query: 242 TQQC 245 + Sbjct: 351 ILRA 354 >gi|224827186|ref|ZP_03700281.1| chromosomal replication initiator protein DnaA [Lutiella nitroferrum 2002] gi|224600579|gb|EEG06767.1| chromosomal replication initiator protein DnaA [Lutiella nitroferrum 2002] Length = 466 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 37/234 (15%), Positives = 81/234 (34%), Gaps = 27/234 (11%) Query: 35 CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN-------- 82 + D L+ A+++ ++ + + G G GK+ L Sbjct: 131 NPAFTFDTLVTGKGNQLARAAAMQIAENPGDQAYNPLFVYGGVGLGKTHLIQAIGNHVYQ 190 Query: 83 ---------IWSDKSRSTRFSNIAKSLDSILID---TRKPVLLEDIDLLDFND---TQLF 127 I +++ + + +L++DI + + F Sbjct: 191 KNPQAKIRYIHAERYVADIMRAYQHKAFDEFKRYYHSLDLLLIDDIQFFAGKNRTMEEFF 250 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 + N++ + ++MT T+P L SR V+I P+ + +++K Sbjct: 251 YAFNALLESGKQVIMTCDTYPKQIEGMDERLISRFSWGLTVEIQPPELEMRVAILMKKAE 310 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 I +D +A +I Q + ++ E + ++ A I+ L E LK+ Sbjct: 311 ADSIKLDHTVAFFIAQNVRSNVRELEGALKRVVAYARFTNQSISLELVKEALKD 364 >gi|315225750|ref|ZP_07867538.1| DNA-directed DNA replication initiator protein [Parascardovia denticolens DSM 10105] gi|315119882|gb|EFT83014.1| DNA-directed DNA replication initiator protein [Parascardovia denticolens DSM 10105] Length = 613 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 40/243 (16%), Positives = 84/243 (34%), Gaps = 31/243 (12%) Query: 35 CLGISRDDLLVHSAIE----QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW------ 84 + D + ++ AV + +S + + + G SG GK+ L N Sbjct: 268 NPFATFDTFVQGTSNRFAKSAAVMVAESPGTVDYNPLFIYGESGLGKTHLLNAIGNYVLR 327 Query: 85 -----------SDKSRSTRFSNIAKSLDSILIDTR--------KPVLLEDIDLLDFND-- 123 +++ + S +A +LL+DI ++ Sbjct: 328 QDPTMIVRYVTAEEFVNDFVSALAAGARKQAALANFTKKYRNVDVLLLDDIQFFRGSETM 387 Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 Q FH N + +++ + P L +R VV ++ P+ D ++ Sbjct: 388 EQFFHTFNELVSTGKQIVIASDVAPNHLKGFNERLRTRFNNGLVVDVAPPEKDTRLAILR 447 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 ++ I + + YI ++ S+ E + ++ +A +T SLA + L + Sbjct: 448 LKASNSNIEVPADVLDYIADKITDSVRELEGALTRVTAIATLNNQPVTHSLAEQTLHDFF 507 Query: 244 QCD 246 D Sbjct: 508 NSD 510 >gi|118578450|ref|YP_899700.1| chromosomal replication initiation protein [Pelobacter propionicus DSM 2379] gi|166214687|sp|A1AJX2|DNAA_PELPD RecName: Full=Chromosomal replication initiator protein DnaA gi|118501160|gb|ABK97642.1| chromosomal replication initiator protein DnaA [Pelobacter propionicus DSM 2379] Length = 450 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 77/198 (38%), Gaps = 23/198 (11%) Query: 67 VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPV------------- 111 + + G G GKS L N +S S S S + + + + Sbjct: 151 LFIYGGVGLGKSHLLNAIGHTIRSSSPNLSVCYCSAEKFMYEMVNALRQKRMDQFRSRFR 210 Query: 112 -----LLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 L++DI + + FH N+++ +++T+ FP L SR + Sbjct: 211 NLDVLLVDDIQFISGKVGTQEEFFHTFNALYDMQKQIVITSDKFPREISDLEERLRSRFE 270 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + I PD + ++ K +I + + + ++ R++ E ++ ++ + Sbjct: 271 WGLIADIQPPDLETKIAILKKKSEITRIQLPEDVIYFLASSDTRNIRELEGMLIRLGAYS 330 Query: 224 LSRGMGITRSLAAEVLKE 241 +G+ IT +A E LKE Sbjct: 331 SLQGIPITLDMARENLKE 348 >gi|259500777|ref|ZP_05743679.1| DNA-directed DNA replication initiator protein [Lactobacillus iners DSM 13335] gi|302190772|ref|ZP_07267026.1| chromosomal replication initiation protein [Lactobacillus iners AB-1] gi|259167471|gb|EEW51966.1| DNA-directed DNA replication initiator protein [Lactobacillus iners DSM 13335] Length = 453 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 44/261 (16%), Positives = 91/261 (34%), Gaps = 28/261 (10%) Query: 10 FFVPDKQKNDQP--KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV- 66 F V QK +P +N + + D + + A + P Sbjct: 91 FVVHKTQKKQKPVIENNHNEFAKDLQLNSKYTFDTFVQGEGNKLAAGAALAVADNPGSFY 150 Query: 67 --VILVGPSGSGKSCLANIW-----SDKSRSTRFSNIAKSLDSILIDTRK---------- 109 + + G G GK+ L ++K+ + +++ + I++ K Sbjct: 151 NPLFIFGGVGLGKTHLMQAIGHQMLTEKANAKIVYIQSETFVNDFINSIKNKTQDLFREK 210 Query: 110 -----PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161 +L++DI + + FH +++ ++MT+ P L SR Sbjct: 211 YRTCDLLLVDDIQFFAKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPNEIPDLSERLVSR 270 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 V+I+ PD + ++ K + ID Y+ +++ ++ E + K+ Sbjct: 271 FAWGLQVEITPPDLETRIAILRKKAEADGLGIDDNTLDYVASQVDTNIRELEGALVKVQA 330 Query: 222 LALSRGMGITRSLAAEVLKET 242 A I +LA E L + Sbjct: 331 HATIEREDINLNLAKEALADL 351 >gi|187927113|ref|YP_001897600.1| chromosomal replication initiation protein [Ralstonia pickettii 12J] gi|309780182|ref|ZP_07674933.1| bacterial DnaA protein helix-turn-helix domain protein [Ralstonia sp. 5_7_47FAA] gi|226735836|sp|B2UCF1|DNAA_RALPJ RecName: Full=Chromosomal replication initiator protein DnaA gi|187724003|gb|ACD25168.1| chromosomal replication initiator protein DnaA [Ralstonia pickettii 12J] gi|308920885|gb|EFP66531.1| bacterial DnaA protein helix-turn-helix domain protein [Ralstonia sp. 5_7_47FAA] Length = 529 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 37/231 (16%), Positives = 86/231 (37%), Gaps = 26/231 (11%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD-------K 87 ++ D+ + A + A + P + + L G G GK+ L + + + Sbjct: 198 LTFDNFVTGKANQLARAAAIQVANNPGKSYNPLYLYGGVGLGKTHLIHAIGNFMLMENPR 257 Query: 88 SRSTRFSNIAKSLDSILIDTRKP-------------VLLEDIDLLDF---NDTQLFHIIN 131 +R D + RK +L++DI + F+ Sbjct: 258 ARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKNRTQEEFFYAFE 317 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 ++ + +++T+ T+P L SR + V I P+ + +++K + Sbjct: 318 ALIANRAQVIITSDTYPKEITGIDDRLISRFDSGLTVAIEPPELEMRVAILMKKAQAENV 377 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + +++A ++ + + ++ E + K+ + G IT + E LK+ Sbjct: 378 TVPEEVAFFVAKHLRSNVRELEGALRKILAYSNFHGKEITIEVTREALKDL 428 >gi|329121620|ref|ZP_08250241.1| DNA-directed DNA replication initiator protein DnaA [Dialister micraerophilus DSM 19965] gi|327468775|gb|EGF14252.1| DNA-directed DNA replication initiator protein DnaA [Dialister micraerophilus DSM 19965] Length = 494 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 40/243 (16%), Positives = 90/243 (37%), Gaps = 34/243 (13%) Query: 33 PRCLGISRDDLLVHSAIEQAVR-LIDSWPSWPS--------RVVILVGPSGSGKSCLANI 83 P + + + + E A + + + + + GPSG GK+ L + Sbjct: 150 PINTEHTFETFVHGNCNEMAFQSALSVAQMAVNMEEMDKKMNPLFIYGPSGLGKTHLLHA 209 Query: 84 WSD--KSRSTRFSNIAKSLDSILIDTRKPV------------------LLEDID---LLD 120 + + + S I S ++ + + L++D+ + Sbjct: 210 ICNYIRENAPHLSYIFVSSETFTNELIASIKSNSMPKFREKYRNPDYLLIDDVQFFGSKN 269 Query: 121 FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLE 179 + ++F+ N++ +++T+ P L D + +R + +V IS PD + Sbjct: 270 SSKMEIFNTFNTLFDNKKHIILTSDRTPSDIE-ELEDRIQTRFSSGLIVPISPPDYEICS 328 Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 ++ K I I ++ YI + + ++ + +K+ A + IT A E L Sbjct: 329 IILEKRAEKEGINIPSEVINYIAEHINTNVRELDGAFNKLVTYAKVKKKEITLEFAKETL 388 Query: 240 KET 242 K+ Sbjct: 389 KDQ 391 >gi|229816997|ref|ZP_04447279.1| hypothetical protein BIFANG_02252 [Bifidobacterium angulatum DSM 20098] gi|229785742|gb|EEP21856.1| hypothetical protein BIFANG_02252 [Bifidobacterium angulatum DSM 20098] Length = 516 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 44/259 (16%), Positives = 93/259 (35%), Gaps = 37/259 (14%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILV 70 +N ++ E L + D + + A + + + + Sbjct: 160 GVDRNKVQRDPETHL------NKNATFDTFVPGDSNRFARTVALAVAEGSGKDFNPLCIY 213 Query: 71 GPSGSGKSCLANIWS------DKSRSTRFSNIAKSLDSILIDTRKP-------------- 110 G SG GK+ L N D + R+ N + L+ + + P Sbjct: 214 GGSGLGKTHLLNAIGNYALVKDPTLKVRYVNSEEFLNEFIEALQIPSQSQGRIAEFNRRY 273 Query: 111 -----VLLEDIDLLDFNDTQL---FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 +L++DI L + L FH N++HQ + +++ + P + L SR Sbjct: 274 RSVDVLLIDDIQFLGGKEATLEQFFHTFNALHQANKRIVIASDVAPKNLKGFEARLISRF 333 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 + V + PD + ++ M + I + I +R ++ E + ++ + Sbjct: 334 DSGLTVDVKPPDLETRIAILRMMASMNHSNIPNDVLDLIAERFTENIRELEGALTRVTAV 393 Query: 223 ALSRGMGITRSLAAEVLKE 241 A +TR++A + L++ Sbjct: 394 ASLSNQPVTRAMAEQTLQD 412 >gi|313199778|ref|YP_004038436.1| chromosomal replication initiator protein dnaa [Methylovorus sp. MP688] gi|312439094|gb|ADQ83200.1| chromosomal replication initiator protein DnaA [Methylovorus sp. MP688] Length = 469 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 37/234 (15%), Positives = 85/234 (36%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSD----- 86 + D+ + A + A P + + G G GK+ L + Sbjct: 135 NSAFNFDNFVTGRANQLARAAALQVAENPGTAYNPLFIYGGVGLGKTHLLQAIGNHLKMN 194 Query: 87 --------KSRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDF---NDTQLFH 128 S++ K+ + D + +L++DI + F+ Sbjct: 195 RPDAKIRYLHAERYVSDVVKAYELKAFDEFKRQYHSLDLLLIDDIQFFAKKSRTQEEFFY 254 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 NS+ + +++T T+P L +R V + P+ + +++K + Sbjct: 255 AFNSLIEAKKQIIITCDTYPKEIVDVDERLRTRFSWGLTVAVEPPELEMRVAILLKKAEE 314 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + +A +I +++ S+ E ++++ +A G I LA + LK+ Sbjct: 315 AKFVLHEDVAFFIAKQVRSSVRELEGALNRIVAMANFTGNPIDVHLAKDALKDL 368 >gi|254384774|ref|ZP_05000111.1| chromosomal replication initiator protein dnaA [Streptomyces sp. Mg1] gi|194343656|gb|EDX24622.1| chromosomal replication initiator protein dnaA [Streptomyces sp. Mg1] Length = 590 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 88/235 (37%), Gaps = 28/235 (11%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90 D ++ ++ A + P+ + + G SG GK+ L + +RS Sbjct: 285 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSL 344 Query: 91 -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128 R+ + + + + R +L++DI L + + FH Sbjct: 345 YPGTRVRYVSSEEFTNEFINSIRDGKGDAFRKRYREMDILLVDDIQFLASKESTQEEFFH 404 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 N++H + +++++ P V L D L +R + + + P+ + ++ K Sbjct: 405 TFNTLHNANKQIVLSSDRPPKQL-VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 463 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 Q+ ++ +I R+ R++ E + ++ A + L +VLK Sbjct: 464 QEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEDVLKNL 518 >gi|55820104|ref|YP_138546.1| chromosomal replication initiation protein [Streptococcus thermophilus LMG 18311] gi|55821994|ref|YP_140435.1| chromosomal replication initiation protein [Streptococcus thermophilus CNRZ1066] gi|116626973|ref|YP_819592.1| chromosomal replication initiation protein [Streptococcus thermophilus LMD-9] gi|71151807|sp|Q5M226|DNAA_STRT1 RecName: Full=Chromosomal replication initiator protein DnaA gi|71151808|sp|Q5M6L8|DNAA_STRT2 RecName: Full=Chromosomal replication initiator protein DnaA gi|122268421|sp|Q03N26|DNAA_STRTD RecName: Full=Chromosomal replication initiator protein DnaA gi|55736089|gb|AAV59731.1| chromosomal replication initiator protein dnaA [Streptococcus thermophilus LMG 18311] gi|55737979|gb|AAV61620.1| chromosomal replication initiator protein dnaA [Streptococcus thermophilus CNRZ1066] gi|116100250|gb|ABJ65396.1| ATPase involved in DNA replication initiation [Streptococcus thermophilus LMD-9] gi|312277419|gb|ADQ62076.1| Chromosomal replication initiator protein dnaA [Streptococcus thermophilus ND03] Length = 454 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 44/262 (16%), Positives = 86/262 (32%), Gaps = 35/262 (13%) Query: 13 PDKQKNDQPKNKEEQLFFSFPR-----CLGISRDDLLVHSAIEQAVRL---IDSWPSWPS 64 P ND +E+Q P + D+ + +V + P Sbjct: 90 PTLANNDFSNKREQQTP-DLPTLNSDLNSKYTFDNFIQGDENRWSVAASLAVADSPGATY 148 Query: 65 RVVILVGPSGSGKSCLANIWSDKS------------------RSTRFSNIAKSLDSILID 106 + + G G GK+ L N +K +D + + Sbjct: 149 NPLFIYGGPGLGKTHLLNAIGNKVLHDNPQARIKYITAENFINEFVLHIRLDKMDELKLK 208 Query: 107 TR--KPVLLEDIDLLD-----FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC 159 R +L++DI L + F+ N +H + +++T+ P L Sbjct: 209 YRHLDVLLIDDIQSLAKKSTQATQEEFFNTFNVLHDNNKQIVLTSDRNPDQLNEMEERLV 268 Query: 160 SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 +R K V I+ PD + ++ D + Y+ + + ++ E + + Sbjct: 269 TRFKWGLTVNITPPDFETRVAILTNKIMDYDYHFPPETIEYLAGQFDSNVRDLEGALKDI 328 Query: 220 DNLALSRG-MGITRSLAAEVLK 240 +A R IT +AAE ++ Sbjct: 329 SLVANVRQLDTITVEVAAEAIR 350 >gi|312872761|ref|ZP_07732826.1| chromosomal replication initiator protein DnaA [Lactobacillus iners LEAF 2062A-h1] gi|315654131|ref|ZP_07907047.1| DNA-directed DNA replication initiator protein [Lactobacillus iners ATCC 55195] gi|325913710|ref|ZP_08176072.1| chromosomal replication initiator protein DnaA [Lactobacillus iners UPII 60-B] gi|311091803|gb|EFQ50182.1| chromosomal replication initiator protein DnaA [Lactobacillus iners LEAF 2062A-h1] gi|315488827|gb|EFU78473.1| DNA-directed DNA replication initiator protein [Lactobacillus iners ATCC 55195] gi|325477069|gb|EGC80219.1| chromosomal replication initiator protein DnaA [Lactobacillus iners UPII 60-B] Length = 453 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 44/261 (16%), Positives = 91/261 (34%), Gaps = 28/261 (10%) Query: 10 FFVPDKQKNDQP--KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV- 66 F V QK +P +N + + D + + A + P Sbjct: 91 FVVHKTQKKQEPVIENNHNEFAKDLQLNSKYTFDTFVQGEGNKLAAGAALAVADNPGSFY 150 Query: 67 --VILVGPSGSGKSCLANIW-----SDKSRSTRFSNIAKSLDSILIDTRK---------- 109 + + G G GK+ L ++K+ + +++ + I++ K Sbjct: 151 NPLFIFGGVGLGKTHLMQAIGHQMLTEKANAKIVYIQSETFVNDFINSIKNKTQDLFREK 210 Query: 110 -----PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161 +L++DI + + FH +++ ++MT+ P L SR Sbjct: 211 YRTCDLLLVDDIQFFAKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPNEIPDLSERLVSR 270 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 V+I+ PD + ++ K + ID Y+ +++ ++ E + K+ Sbjct: 271 FAWGLQVEITPPDLETRIAILRKKAEADGLGIDDNTLDYVASQVDTNIRELEGALVKVQA 330 Query: 222 LALSRGMGITRSLAAEVLKET 242 A I +LA E L + Sbjct: 331 HATIEREDINLNLAKEALADL 351 >gi|284047389|ref|YP_003397728.1| chromosomal replication initiator protein DnaA [Acidaminococcus fermentans DSM 20731] gi|283951610|gb|ADB46413.1| chromosomal replication initiator protein DnaA [Acidaminococcus fermentans DSM 20731] Length = 462 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 43/254 (16%), Positives = 89/254 (35%), Gaps = 27/254 (10%) Query: 16 QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGP 72 Q QP K Q F + D+ + + E+A + + P+ + L Sbjct: 108 QPEPQPAAKPAQ-EFDSHLSPKYTFDNFIRGKSNEEAFNFSMGVANAPAKSYNPLFLYSD 166 Query: 73 SGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTRKPV---L 112 G GK+ L N S+ + I + + + + + L Sbjct: 167 PGLGKTHLMNAIGNYIHKKFPQMKILYTSSETFTNELIGAIQHNTNEAFRNKYRNIDVLL 226 Query: 113 LEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 ++DI L + + FH ++ Q D +++++ P L SR +++ Sbjct: 227 IDDIQFLRKKESTQEEFFHTFEALKQADKQIIISSDRPPKELDTLEERLTSRFMQGLIIE 286 Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229 I+ PD + ++ M + ++ I ++ ++ E K+ A Sbjct: 287 INHPDFETRSAILRSMAEKDHLEFPLEVIQLIATNVKTNIRELEGAYTKVHAFANLNHQP 346 Query: 230 ITRSLAAEVLKETQ 243 +T LA + LK+ Sbjct: 347 VTMELARKALKDLD 360 >gi|227487662|ref|ZP_03917978.1| chromosomal replication initiation protein [Corynebacterium glucuronolyticum ATCC 51867] gi|227092356|gb|EEI27668.1| chromosomal replication initiation protein [Corynebacterium glucuronolyticum ATCC 51867] Length = 527 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 42/257 (16%), Positives = 97/257 (37%), Gaps = 35/257 (13%) Query: 21 PKNKEEQLFF-SFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGS 75 P + +Q + + + ++ + A + +S P+ + + G SG Sbjct: 169 PSTQPKQAPAANSTLNPKHTFESFVIGKSNQFSQAAAFAVAES-PAEAYNPLYIWGGSGL 227 Query: 76 GKSCLANIWSDKSRSTRFSN------------IAKSLDSILIDTRKP----------VLL 113 GK+ L + + + + + ++S+ D ++ +++ Sbjct: 228 GKTHLLH--ATGNYALQLHPGIRVMYVSSEEFTNDYINSVRDDKQESFKHRYRNLDILMV 285 Query: 114 EDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVK 169 +DI L+ + + FH N++HQ + +++++ P + V L D L +R +A + Sbjct: 286 DDIQFLEGKEGTQEEFFHTFNALHQANKQIILSSDRPPQNL-VTLEDRLRTRFQAGLITD 344 Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229 I PD + ++ K + +D+ I S+ E + ++ A Sbjct: 345 IQPPDLETRIAILEKKAIAEHVQVDRDSLTEIATPFPGSIRSLEGALIRVTAFASLTHRQ 404 Query: 230 ITRSLAAEVLKETQQCD 246 IT L E L + + Sbjct: 405 ITPDLVREALSDLIGTE 421 >gi|309807844|ref|ZP_07701776.1| chromosomal replication initiator protein DnaA [Lactobacillus iners LactinV 01V1-a] gi|308168946|gb|EFO71032.1| chromosomal replication initiator protein DnaA [Lactobacillus iners LactinV 01V1-a] Length = 436 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 44/261 (16%), Positives = 91/261 (34%), Gaps = 28/261 (10%) Query: 10 FFVPDKQKNDQP--KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV- 66 F V QK +P +N + + D + + A + P Sbjct: 91 FVVHKTQKKQEPVIENNHNEFAKDLQLNSKYTFDTFVQGEGNKLAAGAALAVADNPGSFY 150 Query: 67 --VILVGPSGSGKSCLANIW-----SDKSRSTRFSNIAKSLDSILIDTRK---------- 109 + + G G GK+ L ++K+ + +++ + I++ K Sbjct: 151 NPLFIFGGVGLGKTHLMQAIGHQMLTEKANAKIVYIQSETFVNDFINSIKNKTQDLFREK 210 Query: 110 -----PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161 +L++DI + + FH +++ ++MT+ P L SR Sbjct: 211 YRTCDLLLVDDIQFFAKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPNEIPDLSERLVSR 270 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 V+I+ PD + ++ K + ID Y+ +++ ++ E + K+ Sbjct: 271 FAWGLQVEITPPDLETRIAILRKKAEADGLGIDDNTLDYVASQVDTNIRELEGALVKVQA 330 Query: 222 LALSRGMGITRSLAAEVLKET 242 A I +LA E L + Sbjct: 331 HATIEREDINLNLAKEALADL 351 >gi|238926597|ref|ZP_04658357.1| DNA-directed DNA replication initiator protein [Selenomonas flueggei ATCC 43531] gi|238885543|gb|EEQ49181.1| DNA-directed DNA replication initiator protein [Selenomonas flueggei ATCC 43531] Length = 473 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 38/259 (14%), Positives = 79/259 (30%), Gaps = 41/259 (15%) Query: 13 PDKQKNDQPKNKEEQ--LFFSFPRCLGISRDD------------LLVHSAIEQAVRLIDS 58 P K + Q L + P + DD + + + + + Sbjct: 101 PASLKEPAEEAAPAQGSLPLTPPETHAAAPDDTTTLNPKYTFEAFVTGRSNQFPYAMAKA 160 Query: 59 WPSWPS----RVVILVGPSGSGKSCLANIWSDKSRS------TRFSNIAKSLDSILID-- 106 P + + G G GK+ L + K + + + + Sbjct: 161 VADAPGLPSHNPLFIYGGVGLGKTHLMHAVGHKILADDPKKRVLYIASTDFTNEFIRSIR 220 Query: 107 ------------TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSW 151 + +L++DI + T+ F N + S +++T+ P Sbjct: 221 EKNMDAFREKYYSIDVLLIDDIQFFAGQEQTQTEFFQTFNKLRDNGSQIILTSDRQPQDV 280 Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211 L SR V I P+ + ++ K + I + YI R++ ++ Sbjct: 281 KGLEDRLISRFAGGAPVDIQPPEFETRVAILQKKAQSEDVDIPADVVTYIASRVDSNIRE 340 Query: 212 AEKLVDKMDNLALSRGMGI 230 E + ++ A + M I Sbjct: 341 LEGALTRLIKYASTMRMPI 359 >gi|81299909|ref|YP_400117.1| chromosomal replication initiation protein [Synechococcus elongatus PCC 7942] gi|81168790|gb|ABB57130.1| chromosomal replication initiator protein DnaA [Synechococcus elongatus PCC 7942] Length = 482 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 41/256 (16%), Positives = 82/256 (32%), Gaps = 31/256 (12%) Query: 13 PDKQKNDQPKNKEEQLFF---SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66 P + P + SR +V + A + +P R Sbjct: 123 PAVEVVKPPTTTAGRPPLRSSDLNPKYVFSR--FVVGANNRMAHAASLAIAEYPGREYNP 180 Query: 67 VILVGPSGSGKSCLANIWSD-----KSRSTRFSNIAKSLDSILIDT-------------- 107 + L G G GK+ L + F + + LI Sbjct: 181 LFLCGGVGLGKTHLMQAIGHYRLEIDPDAKIFYVSTEQFTNDLIAAIRRDSMQSFREHYR 240 Query: 108 -RKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 ++++DI ++ + + F+ NS+H+ +++ + P L SR Sbjct: 241 AADVIMVDDIQFIEGKEYTQEEFFYTFNSLHEAGKQIVLASDRPPSQIPRLQERLISRFS 300 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + I PD + ++ K + + + + YI R ++ E + + A Sbjct: 301 MGLIADIQPPDFETRVAILQKKSEFENMPLPRDVIEYIAARYTSNIRELEGALTRAVAYA 360 Query: 224 LSRGMGITRSLAAEVL 239 G+ +T + A VL Sbjct: 361 SISGLALTLANIAPVL 376 >gi|15646137|ref|NP_208319.1| chromosomal replication initiation protein [Helicobacter pylori 26695] gi|14194658|sp|O26057|DNAA_HELPY RecName: Full=Chromosomal replication initiator protein DnaA gi|2314709|gb|AAD08568.1| chromosomal replication initiator protein (dnaA) [Helicobacter pylori 26695] Length = 457 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 84/235 (35%), Gaps = 24/235 (10%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS 90 + ++ +V S + P V+ G +G GK+ + N + + Sbjct: 110 VKDSYTFENFVVGSCNNTVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALE 169 Query: 91 TRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFN---DTQLFHI 129 + + + L D K + LL+D L + + FH Sbjct: 170 KHKKVVLVTSEDFLTDFLKHLDNKTMDSFKAKYRHCDFFLLDDAQFLQGKPKLEEEFFHT 229 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N +H +++ + P + L SR + K+ PD + ++ + Sbjct: 230 FNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKCQLN 289 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 QI + +++ YI Q + ++ E + K+ A I +LA VL++ Q+ Sbjct: 290 QITLPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNASIDLNLAKTVLEDLQK 344 >gi|315639363|ref|ZP_07894525.1| DNA-directed DNA replication initiator protein [Campylobacter upsaliensis JV21] gi|315480689|gb|EFU71331.1| DNA-directed DNA replication initiator protein [Campylobacter upsaliensis JV21] Length = 439 Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 36/233 (15%), Positives = 80/233 (34%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDS-WPSWPSRVVI----LVGPSGSGKSCLANIWSDKSR 89 + D +V + + A + + + GP+G GK+ L + Sbjct: 101 NPSFTFDSFVVGGSNQYAYATCKAVSQKDKLGKLYNPIFIYGPTGLGKTHLLQAVGNACL 160 Query: 90 STRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFH 128 I + ++ + D + L++D+ L D + F Sbjct: 161 EMGKKVIYATSENFINDFNSHIINKTMDKFQEKYQNCDVLLIDDVQFLGKTDKIQEKFFF 220 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 I N I ++MT+ P L SR + I+ P + +I K Sbjct: 221 IFNEIRDQSGQIIMTSDNPPNMLKGITDRLKSRFANGIIADITPPQLETKIAIIRKKCEF 280 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++ + ++ +Y+ M ++ E ++ ++ + I+ A E++K+ Sbjct: 281 NEVNLSNEIISYLATAMGDNIREIEGMITNLNAYSRLINQEISLEFAKEMMKD 333 >gi|57506229|ref|ZP_00372148.1| chromosomal replication initiator protein DnaA [Campylobacter upsaliensis RM3195] gi|57015497|gb|EAL52292.1| chromosomal replication initiator protein DnaA [Campylobacter upsaliensis RM3195] Length = 439 Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 36/233 (15%), Positives = 80/233 (34%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDS-WPSWPSRVVI----LVGPSGSGKSCLANIWSDKSR 89 + D +V + + A + + + GP+G GK+ L + Sbjct: 101 NPSFTFDSFVVGGSNQYAYATCKAVSQKDKLGKLYNPIFIYGPTGLGKTHLLQAVGNACL 160 Query: 90 STRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFH 128 I + ++ + D + L++D+ L D + F Sbjct: 161 EMGKKVIYATSENFINDFNSHIINKTMDKFQEKYQNCDVLLIDDVQFLGKTDKIQEKFFF 220 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 I N I ++MT+ P L SR + I+ P + +I K Sbjct: 221 IFNEIRDQSGQIIMTSDNPPNMLKGITDRLKSRFANGIIADITPPQLETKIAIIRKKCEF 280 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++ + ++ +Y+ M ++ E ++ ++ + I+ A E++K+ Sbjct: 281 NEVNLSNEIISYLATAMGDNIREIEGMITNLNAYSRLINQEISLEFAKEMMKD 333 >gi|302520514|ref|ZP_07272856.1| chromosomal replication initiator protein DnaA [Streptomyces sp. SPB78] gi|302429409|gb|EFL01225.1| chromosomal replication initiator protein DnaA [Streptomyces sp. SPB78] Length = 679 Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 87/235 (37%), Gaps = 28/235 (11%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90 D ++ ++ A + P+ + + G SG GK+ L + +RS Sbjct: 341 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSL 400 Query: 91 -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128 R+ + + + + R +L++DI L + + FH Sbjct: 401 YPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFH 460 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 N++H + +++++ P V L D L +R + + P+ + ++ K Sbjct: 461 TFNTLHNANKQIVLSSDRPPRQL-VTLEDRLRNRFEWGLTTDVQPPELETRIAILRKKAV 519 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 Q+ ++ +I R+ R++ E + ++ A + L VLK+ Sbjct: 520 QEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDL 574 >gi|31791178|ref|NP_853671.1| chromosomal replication initiation protein [Mycobacterium bovis AF2122/97] gi|32700077|sp|P49991|DNAA_MYCBO RecName: Full=Chromosomal replication initiator protein DnaA gi|31616763|emb|CAD92863.1| CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA [Mycobacterium bovis AF2122/97] Length = 507 Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 36/233 (15%), Positives = 86/233 (36%), Gaps = 28/233 (12%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRF 93 + D ++ ++ A + P+R + + G SG GK+ L + + F Sbjct: 171 RYTFDTFVIGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHA-AGNYAQRLF 229 Query: 94 SNI---AKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFHI 129 + S + D + L++DI ++ + + FH Sbjct: 230 PGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHT 289 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N++H + +++++ P L +R + + + P+ + ++ K Sbjct: 290 FNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQME 349 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ I + I +ER++ E + ++ A I ++LA VL++ Sbjct: 350 RLAIPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDL 402 >gi|283454960|ref|YP_003359524.1| chromosomal replication initiator protein DnaA [Bifidobacterium dentium Bd1] gi|283101594|gb|ADB08700.1| chromosomal replication initiator protein DnaA [Bifidobacterium dentium Bd1] Length = 500 Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 80/233 (34%), Gaps = 31/233 (13%) Query: 40 RDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSD---------K 87 D + + A + + + + G SG GK+ L N + K Sbjct: 162 FDTFVPGDSNRFARTVALAVAEGSGHDFNPLCIYGGSGLGKTHLLNAIGNYALVKDPNLK 221 Query: 88 SRSTRFSNIAKSLDSILIDTR----------------KPVLLEDIDLLDFNDTQL---FH 128 R L DT +L++DI L + L FH Sbjct: 222 VRYVTSEEFTNEFIEALGDTNQNSGQIKEFNRRYREVDVLLIDDIQFLSGKEATLEQFFH 281 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++HQ + +++ + P L SR ++ V + PD + ++ M Sbjct: 282 TFNTLHQANKRIVIASDVPPKDLKGFQARLISRFESGLTVDVKPPDLETRIAILRMMATM 341 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 I + I +R ++ E ++++ +A +TR+LA L++ Sbjct: 342 NGSNIPNDVLNLIAERFTENIRELEGALNRVTAMASLSNQPVTRALAEHTLQD 394 >gi|262377659|ref|ZP_06070879.1| chromosomal replication initiator protein DnaA [Acinetobacter lwoffii SH145] gi|262307418|gb|EEY88561.1| chromosomal replication initiator protein DnaA [Acinetobacter lwoffii SH145] Length = 458 Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 49/258 (18%), Positives = 97/258 (37%), Gaps = 34/258 (13%) Query: 13 PDKQKNDQPKN-KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDS--WPSWPSRV--V 67 P K+K D KN + QL + + + + A S+ + Sbjct: 106 PKKEKEDSGKNSRRRQL------NPLFTFSLFVEGRSNQMAAETCRKVLTQLGASQHNPL 159 Query: 68 ILVGPSGSGKSCLANI-----WSDKSRSTRFSNIAKSLDSILIDTR-------------- 108 L GP+G GK+ L K + A+S + + Sbjct: 160 FLYGPTGLGKTHLMQAVGNALLQAKPNARVMYMTAESFVQDFVSSLQQGKVEEFKKNCRS 219 Query: 109 -KPVLLEDIDLLDFNDTQL---FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164 +L++DI LL + L F+ N++ +++T+ +P P L SR Sbjct: 220 LDLLLVDDIHLLAGKEASLVEFFYTFNALLDESKQIILTSDRYPKELTELDPRLVSRFSW 279 Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 V + PD + ++++K Q+ + + A +I Q++ ++ E ++K+ ++ Sbjct: 280 GLSVGVEPPDIETRIEILLKKAESNQVDLPRNCALFIAQQVVANVRELEGALNKVVAISR 339 Query: 225 SRGMGITRSLAAEVLKET 242 +G I + E LK+ Sbjct: 340 FKGTPIDLDVVRESLKDV 357 >gi|83591341|ref|YP_425093.1| chromosomal replication initiation protein [Rhodospirillum rubrum ATCC 11170] gi|83574255|gb|ABC20806.1| chromosomal replication initiator protein, DnaA [Rhodospirillum rubrum ATCC 11170] Length = 509 Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 35/239 (14%), Positives = 80/239 (33%), Gaps = 26/239 (10%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWS---- 85 P + D+ +V E A + L G G GK+ L + + Sbjct: 173 PLDPRFTFDNFVVGKPNEFAYAAAKRVADSTGVAFNPLFLYGGVGLGKTHLMHAIARGIR 232 Query: 86 --DKSRSTRFSNIAKSLDSILIDTR--------------KPVLLEDIDLLDFND---TQL 126 R + + + + + R + ++++DI + D + Sbjct: 233 EASPHRRVIYLSAEQFMHRFIRALRQQDTMSFKEQFRSVEVLMVDDIQFISGKDSTQEEF 292 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH N++ S ++++A P L SR+ V + + ++ Sbjct: 293 FHTFNALVDQGSQIVLSADKSPTDLENIGARLRSRMACGLVADLHPTTYELRLGILESKA 352 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 + + +K+ +I ++ + E + ++ A G +T A +VL + + Sbjct: 353 EHMGVSVPEKVLEFIAHKIASNGREVEGALIRLIAHAQLVGRDLTLETAQDVLHDLLRT 411 >gi|227541371|ref|ZP_03971420.1| chromosomal replication initiation protein [Corynebacterium glucuronolyticum ATCC 51866] gi|227182922|gb|EEI63894.1| chromosomal replication initiation protein [Corynebacterium glucuronolyticum ATCC 51866] Length = 527 Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 42/257 (16%), Positives = 97/257 (37%), Gaps = 35/257 (13%) Query: 21 PKNKEEQLFF-SFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGS 75 P + +Q + + + ++ + A + +S P+ + + G SG Sbjct: 169 PSTQPKQAPAANSTLNPKHTFESFVIGKSNQFSQAAAFAVAES-PAEAYNPLYIWGGSGL 227 Query: 76 GKSCLANIWSDKSRSTRFSN------------IAKSLDSILIDTRKP----------VLL 113 GK+ L + + + + + ++S+ D ++ +++ Sbjct: 228 GKTHLLH--ATGNYALQLHPGIRVMYVSSEEFTNDYINSVRDDKQESFKHRYRNLDILMV 285 Query: 114 EDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVK 169 +DI L+ + + FH N++HQ + +++++ P + V L D L +R +A + Sbjct: 286 DDIQFLEGKEGTQEEFFHTFNALHQANKQIILSSDRPPQNL-VTLEDRLRTRFQAGLITD 344 Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229 I PD + ++ K + +D+ I S+ E + ++ A Sbjct: 345 IQPPDLETRIAILEKKAIAEHVQVDRDSLTEIATPFPGSIRSLEGALIRVTAFASLTHRQ 404 Query: 230 ITRSLAAEVLKETQQCD 246 IT L E L + + Sbjct: 405 ITPDLVREALSDLIGTE 421 >gi|9845531|gb|AAB38528.2| chromosomal replication initiator protein [Mycobacterium tuberculosis] Length = 507 Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 35/233 (15%), Positives = 86/233 (36%), Gaps = 28/233 (12%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRF 93 + D ++ ++ A + P+R + + G SG GK+ L + + F Sbjct: 171 RYTFDTFVIGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHA-AGNYAQRLF 229 Query: 94 SNI---AKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFHI 129 + S + D + L++DI ++ + + FH Sbjct: 230 PGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHT 289 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N++H + +++++ P L +R + + + P+ + ++ K Sbjct: 290 FNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQME 349 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ + + I +ER++ E + ++ A I ++LA VL++ Sbjct: 350 RLAVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDL 402 >gi|306826410|ref|ZP_07459724.1| DNA-directed DNA replication initiator protein [Streptococcus pyogenes ATCC 10782] gi|304431405|gb|EFM34400.1| DNA-directed DNA replication initiator protein [Streptococcus pyogenes ATCC 10782] Length = 451 Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 41/268 (15%), Positives = 88/268 (32%), Gaps = 41/268 (15%) Query: 15 KQKNDQPKNKEEQLFFS-FPR-----CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSR 65 +Q + K +Q + P S ++ + AV + + P Sbjct: 87 EQNQTKINQKTKQQALNSLPTVTSDLNSKYSFENFIQGDENRWAVAASIAVANTPGTTYN 146 Query: 66 VVILVGPSGSGKSCLANIWSDKS------------------RSTRFSNIAKSLDSILIDT 107 + + G G GK+ L N + ++D + Sbjct: 147 PLFIWGGPGLGKTHLLNAIGNSVLLENPNARIKYITAENFINEFVIHIRLDTMDELKEKF 206 Query: 108 RKP--VLLEDIDLLD-----FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 R +L++DI L + F+ N++H + +++T+ P L + Sbjct: 207 RNLDLLLIDDIQSLAKKTLSGTQEEFFNTFNALHNNNKQIVLTSDRTPDHLNDLEDRLVT 266 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 R K V I+ PD + ++ + + Y+ + + ++ E + + Sbjct: 267 RFKWGLTVNITPPDFETRVAILTNKIQEYNFIFPQDTIEYLAGQFDSNVRDLEGALKDI- 325 Query: 221 NLALSRGMG----ITRSLAAEVLKETQQ 244 +L IT +AAE ++ +Q Sbjct: 326 --SLVANFKQIDTITVDIAAEAIRARKQ 351 >gi|15607143|ref|NP_214515.1| chromosomal replication initiation protein [Mycobacterium tuberculosis H37Rv] gi|15839373|ref|NP_334410.1| chromosomal replication initiation protein [Mycobacterium tuberculosis CDC1551] gi|148659758|ref|YP_001281281.1| chromosomal replication initiation protein [Mycobacterium tuberculosis H37Ra] gi|148821192|ref|YP_001285946.1| chromosomal replication initiation protein [Mycobacterium tuberculosis F11] gi|167969464|ref|ZP_02551741.1| chromosomal replication initiation protein [Mycobacterium tuberculosis H37Ra] gi|215405983|ref|ZP_03418164.1| chromosomal replication initiation protein [Mycobacterium tuberculosis 02_1987] gi|215413853|ref|ZP_03422518.1| chromosomal replication initiation protein [Mycobacterium tuberculosis 94_M4241A] gi|215425187|ref|ZP_03423106.1| chromosomal replication initiation protein [Mycobacterium tuberculosis T92] gi|215432906|ref|ZP_03430825.1| chromosomal replication initiation protein [Mycobacterium tuberculosis EAS054] gi|215448272|ref|ZP_03435024.1| chromosomal replication initiation protein [Mycobacterium tuberculosis T85] gi|218755717|ref|ZP_03534513.1| chromosomal replication initiation protein [Mycobacterium tuberculosis GM 1503] gi|219555772|ref|ZP_03534848.1| chromosomal replication initiation protein [Mycobacterium tuberculosis T17] gi|253796916|ref|YP_003029917.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis KZN 1435] gi|254366461|ref|ZP_04982505.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis str. Haarlem] gi|254548929|ref|ZP_05139376.1| chromosomal replication initiation protein [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260184854|ref|ZP_05762328.1| chromosomal replication initiation protein [Mycobacterium tuberculosis CPHL_A] gi|260198985|ref|ZP_05766476.1| chromosomal replication initiation protein [Mycobacterium tuberculosis T46] gi|260203138|ref|ZP_05770629.1| chromosomal replication initiation protein [Mycobacterium tuberculosis K85] gi|289441368|ref|ZP_06431112.1| chromosomal replication initiator protein DnaA [Mycobacterium tuberculosis T46] gi|289445526|ref|ZP_06435270.1| chromosomal replication initiator protein DnaA [Mycobacterium tuberculosis CPHL_A] gi|289552251|ref|ZP_06441461.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis KZN 605] gi|289567883|ref|ZP_06448110.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis T17] gi|289572577|ref|ZP_06452804.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis K85] gi|289747769|ref|ZP_06507147.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis 02_1987] gi|289748463|ref|ZP_06507841.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis T92] gi|289756060|ref|ZP_06515438.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis EAS054] gi|289760098|ref|ZP_06519476.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] gi|289764116|ref|ZP_06523494.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis GM 1503] gi|294995607|ref|ZP_06801298.1| chromosomal replication initiation protein [Mycobacterium tuberculosis 210] gi|297632469|ref|ZP_06950249.1| chromosomal replication initiation protein [Mycobacterium tuberculosis KZN 4207] gi|297729438|ref|ZP_06958556.1| chromosomal replication initiation protein [Mycobacterium tuberculosis KZN R506] gi|298527397|ref|ZP_07014806.1| dnaA [Mycobacterium tuberculosis 94_M4241A] gi|306795595|ref|ZP_07433897.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu006] gi|306801570|ref|ZP_07438238.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu008] gi|306805779|ref|ZP_07442447.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu007] gi|307086727|ref|ZP_07495840.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu012] gi|313656767|ref|ZP_07813647.1| chromosomal replication initiation protein [Mycobacterium tuberculosis KZN V2475] gi|3123213|sp|P49993|DNAA_MYCTU RecName: Full=Chromosomal replication initiator protein DnaA gi|166214683|sp|A5TY69|DNAA_MYCTA RecName: Full=Chromosomal replication initiator protein DnaA gi|1321904|emb|CAA63257.1| dnaA [Mycobacterium tuberculosis H37Rv] gi|2808711|emb|CAA16238.1| CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA [Mycobacterium tuberculosis H37Rv] gi|13879042|gb|AAK44224.1| chromosomal replication initiator protein DnaA [Mycobacterium tuberculosis CDC1551] gi|134151973|gb|EBA44018.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis str. Haarlem] gi|148503910|gb|ABQ71719.1| chromosomal replication initiation protein [Mycobacterium tuberculosis H37Ra] gi|148719719|gb|ABR04344.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis F11] gi|253318419|gb|ACT23022.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis KZN 1435] gi|289414287|gb|EFD11527.1| chromosomal replication initiator protein DnaA [Mycobacterium tuberculosis T46] gi|289418484|gb|EFD15685.1| chromosomal replication initiator protein DnaA [Mycobacterium tuberculosis CPHL_A] gi|289436883|gb|EFD19376.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis KZN 605] gi|289537008|gb|EFD41586.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis K85] gi|289541636|gb|EFD45285.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis T17] gi|289688297|gb|EFD55785.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis 02_1987] gi|289689050|gb|EFD56479.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis T92] gi|289696647|gb|EFD64076.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis EAS054] gi|289711622|gb|EFD75638.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis GM 1503] gi|289715662|gb|EFD79674.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] gi|298497191|gb|EFI32485.1| dnaA [Mycobacterium tuberculosis 94_M4241A] gi|308343891|gb|EFP32742.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu006] gi|308347675|gb|EFP36526.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu007] gi|308351593|gb|EFP40444.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu008] gi|308363877|gb|EFP52728.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu012] gi|323717340|gb|EGB26545.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis CDC1551A] gi|326905758|gb|EGE52691.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis W-148] gi|328456707|gb|AEB02130.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis KZN 4207] Length = 507 Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 35/233 (15%), Positives = 86/233 (36%), Gaps = 28/233 (12%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRF 93 + D ++ ++ A + P+R + + G SG GK+ L + + F Sbjct: 171 RYTFDTFVIGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHA-AGNYAQRLF 229 Query: 94 SNI---AKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFHI 129 + S + D + L++DI ++ + + FH Sbjct: 230 PGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHT 289 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N++H + +++++ P L +R + + + P+ + ++ K Sbjct: 290 FNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQME 349 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ + + I +ER++ E + ++ A I ++LA VL++ Sbjct: 350 RLAVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDL 402 >gi|184199647|ref|YP_001853854.1| chromosomal replication initiator protein DnaA [Kocuria rhizophila DC2201] gi|183579877|dbj|BAG28348.1| chromosomal replication initiator protein DnaA [Kocuria rhizophila DC2201] Length = 564 Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 81/234 (34%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDS---WPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90 D ++ + A + P+ + + G SG GK+ L + ++ Sbjct: 224 NPKYVFDSFVIGQSNRFAHAAAFAVAETPAKAYNPLFIYGDSGLGKTHLLHAIGHYAKRL 283 Query: 91 -----TRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDFND---TQLFH 128 R+ N + + + R +L++DI L + + FH Sbjct: 284 YPKMRVRYVNSEEFTNDFINSIRDDEGSSFKGIYRNVDLLLIDDIQFLAGKEHTQEEFFH 343 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H ++ +++T+ P + SR + + + P+ + ++ K Sbjct: 344 TFNALHNHEKQIVITSDMPPKQLTGFAERMRSRFEWGLITDVQPPELETRIAILRKKAIS 403 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + YI + ++ E + ++ A + LA VLK+ Sbjct: 404 EGMDAPDDVMEYIASHISTNIRELEGALIRVTAFASLNKQPVDLPLAELVLKDL 457 >gi|171741734|ref|ZP_02917541.1| hypothetical protein BIFDEN_00825 [Bifidobacterium dentium ATCC 27678] gi|306823996|ref|ZP_07457370.1| DNA-directed DNA replication initiator protein [Bifidobacterium dentium ATCC 27679] gi|309801964|ref|ZP_07696078.1| chromosomal replication initiator protein DnaA [Bifidobacterium dentium JCVIHMP022] gi|171277348|gb|EDT45009.1| hypothetical protein BIFDEN_00825 [Bifidobacterium dentium ATCC 27678] gi|304552994|gb|EFM40907.1| DNA-directed DNA replication initiator protein [Bifidobacterium dentium ATCC 27679] gi|308221412|gb|EFO77710.1| chromosomal replication initiator protein DnaA [Bifidobacterium dentium JCVIHMP022] Length = 500 Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 80/233 (34%), Gaps = 31/233 (13%) Query: 40 RDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSD---------K 87 D + + A + + + + G SG GK+ L N + K Sbjct: 162 FDTFVPGDSNRFARTVALAVAEGSGHDFNPLCIYGGSGLGKTHLLNAIGNYALVKDPNLK 221 Query: 88 SRSTRFSNIAKSLDSILIDTR----------------KPVLLEDIDLLDFNDTQL---FH 128 R L DT +L++DI L + L FH Sbjct: 222 VRYVTSEEFTNEFIEALGDTNQNSGQIKEFNRRYREVDVLLIDDIQFLSGKEATLEQFFH 281 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++HQ + +++ + P L SR ++ V + PD + ++ M Sbjct: 282 TFNTLHQANKRIVIASDVPPKDLKGFQARLISRFESGLTVDVKPPDLETRIAILRMMATM 341 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 I + I +R ++ E ++++ +A +TR+LA L++ Sbjct: 342 NGSNIPNDVLNLIAERFTENIRELEGALNRVTAMASLSNQPVTRALAEHTLQD 394 >gi|218960351|ref|YP_001740126.1| chromosomal replication initiation protein [Candidatus Cloacamonas acidaminovorans] gi|167729008|emb|CAO79919.1| chromosomal replication initiation protein [Candidatus Cloacamonas acidaminovorans] Length = 443 Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 35/237 (14%), Positives = 86/237 (36%), Gaps = 29/237 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDS---WPSWPSRVVILVGPSGSGKSCLAN-----IWSD 86 + D+ +V A + P + + + G SG GK+ L I + Sbjct: 105 NERYTFDEFVVGKNNNFAYSAAKAVAESPGYTYNPLFIYGESGMGKTHLMQAIGNYILKE 164 Query: 87 KSRSTRFSNIAKSLDSILIDTRKP---------------VLLEDID---LLDFNDTQLFH 128 + + +++ + +ID + +L++DI + + FH Sbjct: 165 GRNCSIYYITSEAFTNEMIDGIRSNKMPEFRAKFRKVDLLLMDDIHFLSRKEGTQEEFFH 224 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++ + +++T+ P L +R ++ + + PD + ++ K Sbjct: 225 TFNALFENKKQIVLTSDRPPKDIPDLEKRLVTRFESGLLCDLKSPDFETRVAILRKKAEP 284 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG---ITRSLAAEVLKET 242 + + + +I + S+ E + ++ + + I +LAAE+L + Sbjct: 285 ENVVLSDAIFNFIADNITSSVRALEGSLIRILAFSSYNKLNPEDIDINLAAEILSDM 341 >gi|239942670|ref|ZP_04694607.1| chromosomal replication initiation protein [Streptomyces roseosporus NRRL 15998] gi|239989129|ref|ZP_04709793.1| chromosomal replication initiation protein [Streptomyces roseosporus NRRL 11379] Length = 611 Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 87/235 (37%), Gaps = 28/235 (11%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90 D ++ ++ A + P+ + + G SG GK+ L + +RS Sbjct: 273 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSL 332 Query: 91 -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128 R+ + + + + R +L++DI L + + FH Sbjct: 333 YPGTRVRYVSSEEFTNEFINSIRDGKGDTFRKRYRDVDILLVDDIQFLASKESTQEEFFH 392 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 N++H + +++++ P V L D L +R + + P+ + ++ K Sbjct: 393 TFNTLHNANKQIVLSSDRPPKQL-VTLEDRLRNRFEWGLTTDVQPPELETRIAILRKKAV 451 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 Q+ ++ +I R+ R++ E + ++ A + L VLK+ Sbjct: 452 QEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDL 506 >gi|109946641|ref|YP_663869.1| chromosomal replication initiation protein [Helicobacter acinonychis str. Sheeba] gi|122973477|sp|Q17ZQ6|DNAA_HELAH RecName: Full=Chromosomal replication initiator protein DnaA gi|109713862|emb|CAJ98870.1| chromosomal replication initiator protein [Helicobacter acinonychis str. Sheeba] Length = 449 Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 88/235 (37%), Gaps = 30/235 (12%) Query: 37 GISRDDLLVHSAIEQAVRLI------DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS 90 + ++ +V S + D+ P P V+ G +G GK+ + N + + Sbjct: 111 SYTFENFVVGSCNNTVYEIAKKIAQSDTPPYNP---VLFYGGTGLGKTHILNAIGNHALE 167 Query: 91 TRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFN---DTQLFHI 129 + + + L D K + LL+D L + + FH Sbjct: 168 KHKKVVLVTSEDFLRDFLKHLNNRSMDSFKEKYRHCDFFLLDDAQFLQGKPQLEEEFFHT 227 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N +H + +++ + P + L SR + KI PD + ++ + Sbjct: 228 FNELHANNRQIVLISDRSPKNIAGLEDRLKSRFEWGITAKIMPPDLETKLSIVKQKCQLN 287 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 +I + +++ YI Q + ++ E + K+ A I +LA VL++ Q+ Sbjct: 288 KIILPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNAPIDLNLAKTVLEDLQK 342 >gi|312865764|ref|ZP_07725986.1| chromosomal replication initiator protein DnaA [Streptococcus downei F0415] gi|311098639|gb|EFQ56861.1| chromosomal replication initiator protein DnaA [Streptococcus downei F0415] Length = 462 Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 37/257 (14%), Positives = 86/257 (33%), Gaps = 31/257 (12%) Query: 19 DQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGS 75 + Q D+ + + A + + P + + G G Sbjct: 106 QPGSTQSSQPALPSNLNPKYQFDNFIQGDENKWAKAASIAVANSPGTTYNPLFIWGGPGL 165 Query: 76 GKSCLANIWSDK------SRSTRFSNIAKSLDSIL--------------IDTRKPVLLED 115 GK+ L N + + R+ ++ + + +L++D Sbjct: 166 GKTHLLNAIGNTVLENNPNARVRYITAENFINEFVTHIRLESMEELKDNFRSLDVLLIDD 225 Query: 116 IDLLD-----FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 I L + F+ N++H + +++T+ P L +R K V I Sbjct: 226 IQSLAKKTLEGTQEEFFNTFNALHANNKQIVLTSDRTPDHLNNLEERLVTRFKWGLTVDI 285 Query: 171 SLPDDDFLEKVIVKMFADRQI--FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228 + PD + ++ ++ + Y+ + + ++ E + ++ +A + Sbjct: 286 TPPDYETRIAILTNKILEQGFPYTFSQDTIEYLAGQFDSNVRDLEGALKDINLVATVKQA 345 Query: 229 G-ITRSLAAEVLKETQQ 244 IT LAAE ++ +Q Sbjct: 346 NVITVDLAAEAIRARKQ 362 >gi|121635884|ref|YP_976107.1| chromosomal replication initiation protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|121635911|ref|YP_976134.1| chromosomal replication initiation protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224988384|ref|YP_002643051.1| chromosomal replication initiation protein [Mycobacterium bovis BCG str. Tokyo 172] gi|254777908|sp|C1AIZ8|DNAA_MYCBT RecName: Full=Chromosomal replication initiator protein DnaA gi|121491531|emb|CAL69985.1| chromosomal replication initiation protein dnaA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|121491558|emb|CAL70015.1| Chromosomal replication initiator protein dnaA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224771497|dbj|BAH24303.1| chromosomal replication initiation protein [Mycobacterium bovis BCG str. Tokyo 172] Length = 507 Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 35/233 (15%), Positives = 86/233 (36%), Gaps = 28/233 (12%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRF 93 + D ++ ++ A + P+R + + G SG GK+ L + + F Sbjct: 171 RYTFDTFVIGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHA-AGNYAQRLF 229 Query: 94 SNI---AKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFHI 129 + S + D + L++DI ++ + + FH Sbjct: 230 PGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHT 289 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N++H + +++++ P L +R + + + P+ + ++ K Sbjct: 290 FNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQME 349 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ + + I +ER++ E + ++ A I ++LA VL++ Sbjct: 350 RLAVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDL 402 >gi|110677616|ref|YP_680623.1| chromosomal replication initiation protein [Roseobacter denitrificans OCh 114] gi|123362395|sp|Q16DK6|DNAA_ROSDO RecName: Full=Chromosomal replication initiator protein DnaA gi|109453732|gb|ABG29937.1| chromosomal replication initiator protein DnaA [Roseobacter denitrificans OCh 114] Length = 454 Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 35/244 (14%), Positives = 80/244 (32%), Gaps = 31/244 (12%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSR 89 P + D+ +V E A + L G G GK+ L + + + R Sbjct: 113 PLDARFTFDNFIVGKPNELAHAAAKRVAEGGPVTFNPLFLYGGVGLGKTHLMHAIAHELR 172 Query: 90 STRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDF---NDTQL 126 R L + + + ++++D+ + + Sbjct: 173 LRRPEMNVLYLSAEQFMYRFVQALRDRKMMDFKEIFRSVDVLMVDDVQFIAGKGSTQEEF 232 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV-KM 185 FH N++ + ++++ P + SRL+ VV + D + ++ K+ Sbjct: 233 FHTFNALVDQNKQIIISGDRAPGEIKDMEERVKSRLQCGLVVDLHPTDYELRLGILQSKV 292 Query: 186 FADR----QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 R + I + ++ R+ ++ E + ++ A G I L + L + Sbjct: 293 EQQRKNYPGLDISDGVLEFLAHRISTNVRVLEGALTRLCAFASLVGREIDMELTQDCLSD 352 Query: 242 TQQC 245 + Sbjct: 353 VLRA 356 >gi|282863320|ref|ZP_06272379.1| chromosomal replication initiator protein DnaA [Streptomyces sp. ACTE] gi|282561655|gb|EFB67198.1| chromosomal replication initiator protein DnaA [Streptomyces sp. ACTE] Length = 577 Score = 102 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 44/260 (16%), Positives = 92/260 (35%), Gaps = 38/260 (14%) Query: 13 PDKQKNDQPKNKEEQLFFSFPR---CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRV 66 P Q P E P D ++ ++ A + P+ Sbjct: 221 PGSQSAPAPGTNE-------PHARLNPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNP 273 Query: 67 VILVGPSGSGKSCLANIWSDKSRS------TRFSNIAKSLDSILIDTRKP---------- 110 + + G SG GK+ L + +RS R+ + + + + R Sbjct: 274 LFIYGESGLGKTHLLHAIGHYARSLYPGTRVRYVSSEEFTNEFINSIRDGKGDTFRKRYR 333 Query: 111 ----VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRL 162 +L++DI L + + FH N++H + +++++ P V L D L +R Sbjct: 334 DVDILLVDDIQFLASKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQL-VTLEDRLRNRF 392 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 + + P+ + ++ K Q+ ++ +I R+ R++ E + ++ Sbjct: 393 EWGLTTDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAF 452 Query: 223 ALSRGMGITRSLAAEVLKET 242 A + L VLK+ Sbjct: 453 ASLNRQPVDLGLTEIVLKDL 472 >gi|300309347|ref|YP_003773439.1| chromosomal replication initiator protein [Herbaspirillum seropedicae SmR1] gi|300072132|gb|ADJ61531.1| chromosomal replication initiator protein [Herbaspirillum seropedicae SmR1] Length = 465 Score = 102 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 86/234 (36%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87 ++ D+L+ A + A + P + L G G GK+ + + ++ Sbjct: 131 NPVLTFDNLVTGKANQLARAAATQVANNPGTSYNPLFLYGGVGLGKTHIIHAIGNQVLVD 190 Query: 88 --SRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128 R+ + + + ++ + +L++DI + F+ Sbjct: 191 NPGAKIRYIHAEQYVRDVVTAYQRKGFDDFKRYYHSLDLLLIDDIQFFGGKSRTQEEFFY 250 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ +++T+ T+P L SR + V I P+ + +++K + Sbjct: 251 AFEALIAAKKQIIITSDTYPKEISGMDDRLISRFDSGLTVAIEPPELEMRVAILMKKASA 310 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + +A ++ + + ++ E + K+ + G IT + E LK+ Sbjct: 311 EDVVLSDDVAFFVAKHLRSNVRELEGALRKILAYSRFHGKDITIDVVKEALKDL 364 >gi|160932427|ref|ZP_02079817.1| hypothetical protein CLOLEP_01262 [Clostridium leptum DSM 753] gi|156868386|gb|EDO61758.1| hypothetical protein CLOLEP_01262 [Clostridium leptum DSM 753] Length = 438 Score = 102 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 81/235 (34%), Gaps = 26/235 (11%) Query: 38 ISRDDLLVHSAIEQAVRLIDSW---PSWPSRVVILVGPSGSGKSCLANIWS--------- 85 + D +V S+ + A + P+ + + G SG GK+ L Sbjct: 105 FTFDTYIVGSSNKFAHAASLAVAANPAGAYNPLFIYGNSGLGKTHLLYAICNDLKRSHPE 164 Query: 86 --------DKSRSTRFSNIAKSLDSILIDTRK---PVLLEDIDLLDFND---TQLFHIIN 131 D + I S + +L++DI + D + FH N Sbjct: 165 MTTLYIKGDDFTNELIDAIQHGTTSTFHQKYRKTDVLLVDDIQFIAGKDSTQEEFFHTFN 224 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 S+++ +++T+ P L +R + + I PD + +I + + Sbjct: 225 SLYEAKKQIVLTSDRPPKEIQTLEDRLRTRFEWGLIADIQPPDFETRIAIIKRKAEALDL 284 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + + YI R++ ++ E V KM L G T + A + + D Sbjct: 285 ELPGDVCEYIATRLKTNIRQLEGAVKKMKANWLLNGDAPTMANAQTAISDILNND 339 >gi|317181210|dbj|BAJ58996.1| chromosomal replication initiation protein [Helicobacter pylori F32] Length = 455 Score = 102 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 84/235 (35%), Gaps = 24/235 (10%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS 90 + ++ +V S + P V+ G +G GK+ + N + + Sbjct: 108 VKDSYTFENFVVGSCNNTVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALE 167 Query: 91 TRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFN---DTQLFHI 129 + + + L D K + LL+D L + + FH Sbjct: 168 KHKKVVLVTSEDFLTDFLKHLDNKTMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEFFHT 227 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N +H +++ + P + L SR + K+ PD + ++ + Sbjct: 228 FNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKCQLN 287 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 +I + +++ YI Q + ++ E + K+ A I +LA VL++ Q+ Sbjct: 288 KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNASLMNAPIDLNLAKTVLEDLQK 342 >gi|317179709|dbj|BAJ57497.1| chromosomal replication initiation protein [Helicobacter pylori F30] Length = 455 Score = 102 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 84/235 (35%), Gaps = 24/235 (10%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS 90 + ++ +V S + P V+ G +G GK+ + N + + Sbjct: 108 VKDSYTFENFVVGSCNNTVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALE 167 Query: 91 TRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFN---DTQLFHI 129 + + + L D K + LL+D L + + FH Sbjct: 168 KHKKVVLVTSEDFLTDFLKHLDNKTMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEFFHT 227 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N +H +++ + P + L SR + K+ PD + ++ + Sbjct: 228 FNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKCQLN 287 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 +I + +++ YI Q + ++ E + K+ A I +LA VL++ Q+ Sbjct: 288 KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNASLMNAPIDLNLAKTVLEDLQK 342 >gi|217034280|ref|ZP_03439697.1| hypothetical protein HP9810_885g11 [Helicobacter pylori 98-10] gi|216943252|gb|EEC22717.1| hypothetical protein HP9810_885g11 [Helicobacter pylori 98-10] Length = 455 Score = 102 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 84/235 (35%), Gaps = 24/235 (10%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS 90 + ++ +V S + P V+ G +G GK+ + N + + Sbjct: 108 VKDSYTFENFVVGSCNNTVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALE 167 Query: 91 TRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFN---DTQLFHI 129 + + + L D K + LL+D L + + FH Sbjct: 168 KHKKVVLVTSEDFLTDFLKHLDNKTMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEFFHT 227 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N +H +++ + P + L SR + K+ PD + ++ + Sbjct: 228 FNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKCQLN 287 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 +I + +++ YI Q + ++ E + K+ A I +LA VL++ Q+ Sbjct: 288 KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNASLMNAPIDLNLAKTVLEDLQK 342 >gi|318079379|ref|ZP_07986711.1| chromosomal replication initiation protein [Streptomyces sp. SA3_actF] Length = 361 Score = 102 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 87/235 (37%), Gaps = 28/235 (11%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90 D ++ ++ A + P+ + + G SG GK+ L + +RS Sbjct: 23 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSL 82 Query: 91 -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128 R+ + + + + R +L++DI L + + FH Sbjct: 83 YPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFH 142 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 N++H + +++++ P V L D L +R + + P+ + ++ K Sbjct: 143 TFNTLHNANKQIVLSSDRPPRQL-VTLEDRLRNRFEWGLTTDVQPPELETRIAILRKKAV 201 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 Q+ ++ +I R+ R++ E + ++ A + L VLK+ Sbjct: 202 QEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDL 256 >gi|288929563|ref|ZP_06423407.1| bacterial DnaA protein helix-turn-helix domain protein [Prevotella sp. oral taxon 317 str. F0108] gi|288329068|gb|EFC67655.1| bacterial DnaA protein helix-turn-helix domain protein [Prevotella sp. oral taxon 317 str. F0108] Length = 469 Score = 102 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 35/262 (13%), Positives = 88/262 (33%), Gaps = 40/262 (15%) Query: 13 PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQA----VRLIDSWPSWPSRVVI 68 P K++ P+ Q + + + + + + + + + + + Sbjct: 121 PAKEQELDPQLNPHQ-----------TFSNYIEGESNKLSRSVGLSVAEHPNTNQFNPMF 169 Query: 69 LVGPSGSGKSCL---------------------ANIWSDKSRSTRFSNIAKSLDSILIDT 107 + GPSG GK+ L A+++ + + N T Sbjct: 170 IYGPSGCGKTHLVNAIGVQTKQLYPQKRVLYISAHLFQVQFVNAVLKNATNDF-IKFYQT 228 Query: 108 RKPVLLEDID---LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164 ++++D+ D FHI N + + +++ + PV L +R Sbjct: 229 IDMLIVDDVQTWASADKTQETFFHIFNHLFRNGKRIILASDRPPVELNEMSDRLITRFSC 288 Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 + ++ P+ ++ + I ++ +I + S+ E +++ + ++ Sbjct: 289 GIIAELEKPNVQLCVDILNAKIRRDGLKIPAEVTQFIAETANGSVRDLEGVINSLMAYSV 348 Query: 225 SRGMGITRSLAAEVLKETQQCD 246 I LA V+K + D Sbjct: 349 VYNSDIDMRLAERVIKRAVKVD 370 >gi|333025720|ref|ZP_08453784.1| putative chromosomal replication initiation protein [Streptomyces sp. Tu6071] gi|332745572|gb|EGJ76013.1| putative chromosomal replication initiation protein [Streptomyces sp. Tu6071] Length = 699 Score = 102 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 87/235 (37%), Gaps = 28/235 (11%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90 D ++ ++ A + P+ + + G SG GK+ L + +RS Sbjct: 361 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSL 420 Query: 91 -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128 R+ + + + + R +L++DI L + + FH Sbjct: 421 YPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFH 480 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 N++H + +++++ P V L D L +R + + P+ + ++ K Sbjct: 481 TFNTLHNANKQIVLSSDRPPRQL-VTLEDRLRNRFEWGLTTDVQPPELETRIAILRKKAV 539 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 Q+ ++ +I R+ R++ E + ++ A + L VLK+ Sbjct: 540 QEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDL 594 >gi|325860078|ref|ZP_08173204.1| chromosomal replication initiator protein DnaA [Prevotella denticola CRIS 18C-A] gi|325482363|gb|EGC85370.1| chromosomal replication initiator protein DnaA [Prevotella denticola CRIS 18C-A] Length = 468 Score = 102 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 34/253 (13%), Positives = 84/253 (33%), Gaps = 33/253 (13%) Query: 21 PKNKEEQLFFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSG 76 P++ + QL S ++ + + + + + + + + GPSG G Sbjct: 123 PQDIDSQL------DPHKSFNNYVEGDSNKLPRSIGLSIAEHPNTTQFNPMFIYGPSGCG 176 Query: 77 KSCLANIWSDKSRSTRFSNIAKSLDSILID--------------------TRKPVLLEDI 116 K+ L N + + + + L T ++++DI Sbjct: 177 KTHLVNAIGLRVKQLYPQKRVLYVSARLFQVQYTDSVRQNTTNDFINFYQTIDVLIVDDI 236 Query: 117 D---LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 FHI N + + +++ + PV L +R + ++ P Sbjct: 237 QEWATATKTQDTFFHIFNHLFRNGKRIILASDRPPVDLKGMNDRLLTRFSCGLIAELEKP 296 Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233 + ++ + I + + +I + S+ + +++ + ++ I Sbjct: 297 NVQLCIDILHNKIKRDGLCIPEDVVRFISETANGSVRDLQGVINSLLAYSVVYNSNIDMR 356 Query: 234 LAAEVLKETQQCD 246 LA V+K + D Sbjct: 357 LAERVIKRAVKID 369 >gi|317010101|gb|ADU80681.1| chromosomal replication initiation protein [Helicobacter pylori India7] Length = 455 Score = 102 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 84/235 (35%), Gaps = 24/235 (10%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS 90 + ++ +V S + P V+ G +G GK+ + N + + Sbjct: 108 VKDSYTFENFVVGSCNNTVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALE 167 Query: 91 TRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFN---DTQLFHI 129 + + + L D K + LL+D L + + FH Sbjct: 168 KHKKVVLVTSEDFLTDFLKHLDNKTMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEFFHT 227 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N +H +++ + P + L SR + K+ PD + ++ + Sbjct: 228 FNDLHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKCQLN 287 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 +I + +++ YI Q + ++ E + K+ A I +LA VL++ Q+ Sbjct: 288 KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNAPIDLNLAKTVLEDLQK 342 >gi|315635401|ref|ZP_07890667.1| DNA-directed DNA replication initiator protein [Arcobacter butzleri JV22] gi|315480159|gb|EFU70826.1| DNA-directed DNA replication initiator protein [Arcobacter butzleri JV22] Length = 320 Score = 102 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 75/197 (38%), Gaps = 21/197 (10%) Query: 67 VILVGPSGSGKSCLANI----WSDKSRSTRFSNIAKSLDSILIDTRK------------- 109 + + G +G GK+ L +K + + I + ++ + Sbjct: 20 LFIYGGTGLGKTHLLQAVGNHAIEKGNTVIYVTIEQFMNDFTFSIKNKNMEHFRNKYRKC 79 Query: 110 -PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 +L++DI L + + FH N +H ++MT+ P + L SR + Sbjct: 80 DVLLIDDIQFLSGKEQTQEEFFHTFNELHNAKKQIVMTSDRLPSQIAGLVDRLKSRFEWG 139 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 + +P + +I K I + +++ +I ++ S+ E ++ +++ A Sbjct: 140 LTADVQIPGLETKIAIIEKKSELNGICLSREIINFIATNLDNSIREIEGVLIRINASASL 199 Query: 226 RGMGITRSLAAEVLKET 242 IT + +LKE Sbjct: 200 LNQEITLPMVQGLLKEQ 216 >gi|284051271|ref|ZP_06381481.1| chromosomal replication initiation protein [Arthrospira platensis str. Paraca] gi|291566281|dbj|BAI88553.1| chromosomal replication initiator protein DnaA [Arthrospira platensis NIES-39] Length = 453 Score = 102 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 43/243 (17%), Positives = 75/243 (30%), Gaps = 35/243 (14%) Query: 33 PR-CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD-- 86 P +V + A + P R + L G G GK+ L Sbjct: 115 PHLNSKYMFSQFVVGAGSRLAHAASLAVAESPGREFNPLFLCGGVGLGKTHLMQAIGHYR 174 Query: 87 -----KSRSTRFSNIAKSLDSILI-------------DTRKPVLLEDIDLLDFND---TQ 125 +R S + D I +L++DI ++ + + Sbjct: 175 LEINPLARVFYVSTEKFTNDLITAIRRDSMQSFRDHYRAADVLLVDDIQFIEGKEYTQEE 234 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 FH N++H+ +++ + P LCSR V I PD + ++ K Sbjct: 235 FFHTFNTLHEAGKQIVLASDRPPTKISGLQDRLCSRFSMGLVADIQPPDLETRMAILQKK 294 Query: 186 FADRQIFIDKKLAAYIVQRME---RSLV-FAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + + + YI R L + V + +L +T A VL Sbjct: 295 AEYENMRLPPAVIEYIATNYTSNIRELEGALIRAVAYISISSL----PMTVENIAAVLTP 350 Query: 242 TQQ 244 +Q Sbjct: 351 KEQ 353 >gi|254414409|ref|ZP_05028175.1| chromosomal replication initiator protein DnaA [Microcoleus chthonoplastes PCC 7420] gi|196178639|gb|EDX73637.1| chromosomal replication initiator protein DnaA [Microcoleus chthonoplastes PCC 7420] Length = 461 Score = 102 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 44/243 (18%), Positives = 80/243 (32%), Gaps = 31/243 (12%) Query: 7 DYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV 66 S+ VP D + QL +V S A + P R Sbjct: 94 GISWSVPVAANPDTER-PSHQLPKPTELNQKYVFSRFVVGSNNRMAHAAALAVAESPGRE 152 Query: 67 ---VILVGPSGSGKSCLANI-----WSDKSRSTRFSNIAKSLDSILIDT----------- 107 + L G G GK+ L W + S F + + LI Sbjct: 153 FNPLFLCGGVGLGKTHLMQAIAHFRWENSPNSKIFYVSTEHFTNDLIAAIRKDSMQSFRE 212 Query: 108 ----RKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 + +L++DI ++ + + FH N++H+ +++ + P LCS Sbjct: 213 HYRAAEVLLIDDIQFIEGKEYTQEEFFHTFNTLHEAGKQIVLASDRPPHQISRLQERLCS 272 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---RSLV-FAEKLV 216 R + I PD + ++ K I + + + YI + + R L ++V Sbjct: 273 RFSMGLIADIQPPDLETRMAILQKKAEYENIRLPRSVVEYIATQYKSNIRELEGALIRVV 332 Query: 217 DKM 219 + Sbjct: 333 AYI 335 >gi|326778148|ref|ZP_08237413.1| Chromosomal replication initiator protein dnaA [Streptomyces cf. griseus XylebKG-1] gi|326658481|gb|EGE43327.1| Chromosomal replication initiator protein dnaA [Streptomyces cf. griseus XylebKG-1] Length = 608 Score = 102 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 87/235 (37%), Gaps = 28/235 (11%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90 D ++ ++ A + P+ + + G SG GK+ L + +RS Sbjct: 270 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSL 329 Query: 91 -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128 R+ + + + + R +L++DI L + + FH Sbjct: 330 YPGTRVRYVSSEEFTNEFINSIRDGKGDTFRKRYRDVDILLVDDIQFLASKESTQEEFFH 389 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 N++H + +++++ P V L D L +R + + P+ + ++ K Sbjct: 390 TFNTLHNANKQIVLSSDRPPKQL-VTLEDRLRNRFEWGLTTDVQPPELETRIAILRKKAV 448 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 Q+ ++ +I R+ R++ E + ++ A + L VLK+ Sbjct: 449 QEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDL 503 >gi|225020863|ref|ZP_03710055.1| hypothetical protein CORMATOL_00871 [Corynebacterium matruchotii ATCC 33806] gi|305681620|ref|ZP_07404426.1| chromosomal replication initiator protein DnaA [Corynebacterium matruchotii ATCC 14266] gi|224946345|gb|EEG27554.1| hypothetical protein CORMATOL_00871 [Corynebacterium matruchotii ATCC 33806] gi|305658780|gb|EFM48281.1| chromosomal replication initiator protein DnaA [Corynebacterium matruchotii ATCC 14266] Length = 594 Score = 102 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 38/255 (14%), Positives = 91/255 (35%), Gaps = 31/255 (12%) Query: 16 QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVG 71 + ++P + Q + D +V + A+ + + P+ + + G Sbjct: 240 RSREKPAHNPAQ---DDSLNPRYTFDTYVVSDSNKLPTSAAIAVAEK-PARAYNPLFVWG 295 Query: 72 PSGSGKSCLANIW----SDKSRSTRFSNIA------KSLDSILIDTRKP----------V 111 SG GK+ L + + R ++ ++S+ D ++ + Sbjct: 296 DSGLGKTHLMHAIGNYAQQLDPNLRIKYVSSEQFTNDYINSVRDDRQESFKRRYRNLDIL 355 Query: 112 LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168 +++DI L + + FH N++ Q +++++ P L +R ++ + Sbjct: 356 MVDDIQFLQGKEGTQEEFFHTFNALQQGGKQIVLSSDRPPKQLTTLEDRLRTRFQSGLIA 415 Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228 I PD + +++K QI + + I + S+ E ++ A Sbjct: 416 DIYPPDLETRIAILMKKAEAEQIVASRDVLELIASQFSSSIRELEGAFIRVSAWASLNNQ 475 Query: 229 GITRSLAAEVLKETQ 243 I A + L++ Sbjct: 476 QINLKTAEQALEDLM 490 >gi|327312316|ref|YP_004327753.1| chromosomal replication initiator protein DnaA [Prevotella denticola F0289] gi|326945680|gb|AEA21565.1| chromosomal replication initiator protein DnaA [Prevotella denticola F0289] Length = 468 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 34/254 (13%), Positives = 84/254 (33%), Gaps = 35/254 (13%) Query: 21 PKNKEEQLFFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSG 76 P++ + QL S ++ + + + + + + + + GPSG G Sbjct: 123 PQDIDSQL------DPHKSFNNYVEGDSNKLPRSIGLSIAEHPNTTQFNPMFIYGPSGCG 176 Query: 77 KSCL---------------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLED 115 K+ L A ++ + + N T ++++D Sbjct: 177 KTHLVNAVGLRVKQLYPQKRVLYVSARLFQVQYTDSVRQNTTNDF-INFYQTIDVLIVDD 235 Query: 116 ID---LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 I FHI N + + +++ + PV L +R + ++ Sbjct: 236 IQEWATATKTQDTFFHIFNHLFRNGKRIILASDRPPVDLKGMNDRLLTRFSCGLIAELEK 295 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232 P+ ++ + I + + +I + S+ + +++ + ++ I Sbjct: 296 PNVQLCIDILHNKIKRDGLCIPEDVVRFISETANGSVRDLQGVINSLLAYSVVYNSNIDM 355 Query: 233 SLAAEVLKETQQCD 246 LA V+K + D Sbjct: 356 RLAERVIKRAVKID 369 >gi|300689715|ref|YP_003750710.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Ralstonia solanacearum PSI07] gi|299076775|emb|CBJ49382.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Ralstonia solanacearum PSI07] Length = 525 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 87/234 (37%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD----- 86 ++ D+L+ A + A + P + + L G G GK+ L + + Sbjct: 191 NPILTFDNLVTGKANQLARAAAVQVANNPGKSYNPLYLYGGVGLGKTHLIHAIGNFMLME 250 Query: 87 --KSRSTRFSNIAKSLDSILIDTRKP-------------VLLEDIDLLDF---NDTQLFH 128 ++R D + RK +L++DI + F+ Sbjct: 251 NPRARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKNRTQEEFFY 310 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + +++T+ T+P L SR + V I P+ + +++K Sbjct: 311 AFEALIANRAQVIITSDTYPKEITGIDDRLISRFDSGLTVAIEPPELEMRVAILMKKAQA 370 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + +++A ++ + + ++ E + K+ + G IT + E LK+ Sbjct: 371 ENVTVPEEVAFFVAKHLRSNVRELEGALRKILAYSNFHGKEITIEVTREALKDL 424 >gi|210135692|ref|YP_002302131.1| chromosomal replication initiation protein [Helicobacter pylori P12] gi|226735815|sp|B6JP23|DNAA_HELP2 RecName: Full=Chromosomal replication initiator protein DnaA gi|210133660|gb|ACJ08651.1| chromosomal replication initiator protein [Helicobacter pylori P12] Length = 455 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 84/235 (35%), Gaps = 24/235 (10%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS 90 + ++ +V S + P V+ G +G GK+ + N + + Sbjct: 108 VKDSYTFENFVVGSCNNTVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALE 167 Query: 91 TRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFN---DTQLFHI 129 + + + L D K + LL+D L + + FH Sbjct: 168 KHKKVVLVTSEDFLTDFLKHLDNKTMDSFKAKYRHCDFFLLDDAQFLQGKPKLEEEFFHT 227 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N +H +++ + P + L SR + K+ P+ + ++ + Sbjct: 228 FNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPNLETKLSIVKQKCQLN 287 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 QI + +++ YI Q + ++ E + K+ A I +LA VL++ Q+ Sbjct: 288 QITLPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNAPIDLNLAKTVLEDLQK 342 >gi|298345816|ref|YP_003718503.1| DNA-directed DNA replication initiator protein [Mobiluncus curtisii ATCC 43063] gi|304390480|ref|ZP_07372433.1| DNA-directed DNA replication initiator protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315657689|ref|ZP_07910571.1| DNA-directed DNA replication initiator protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298235877|gb|ADI67009.1| DNA-directed DNA replication initiator protein [Mobiluncus curtisii ATCC 43063] gi|304326236|gb|EFL93481.1| DNA-directed DNA replication initiator protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315492161|gb|EFU81770.1| DNA-directed DNA replication initiator protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 483 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 81/235 (34%), Gaps = 26/235 (11%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW------- 84 + D ++ S+ A + + P+ + + G G GK+ L + Sbjct: 143 NPTYTFDSFVIGSSNSFTAAAAESVVASPAKAYNPLFIYGGPGLGKTHLLHAIGNYALEL 202 Query: 85 ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFNDTQL---FH 128 S++ + + IA + + V L++DI L + L FH Sbjct: 203 YPDSKVKYISSEEFTNEFINAIASQTFAEFQARYREVDFLLIDDIQFLAGKEQTLEEFFH 262 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H +++T+ P + SRL+ + I P + ++ + Sbjct: 263 TFNTLHTAQKQVVITSDVAPKELKGFEERVRSRLEWGLMADIQPPSLETRIAILRRKAQA 322 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 + + +A +I ++ + E + ++ + T A +++ Sbjct: 323 GNMQMPDDVAEFIASNVDSDIRALEGALIRVTAYWSLNHVPATIETAKLAIRDLM 377 >gi|56750458|ref|YP_171159.1| chromosomal replication initiation protein [Synechococcus elongatus PCC 6301] gi|56685417|dbj|BAD78639.1| chromosomal replication initiator protein DnaA [Synechococcus elongatus PCC 6301] Length = 482 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 41/256 (16%), Positives = 82/256 (32%), Gaps = 31/256 (12%) Query: 13 PDKQKNDQPKNKEEQLFF---SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66 P + P + SR +V + A + +P R Sbjct: 123 PAVEVVKPPTTTAGRPPLRSSDLNPKYVFSR--FVVGAYNRMAHAASLAIAEYPGREYNP 180 Query: 67 VILVGPSGSGKSCLANIWSD-----KSRSTRFSNIAKSLDSILIDT-------------- 107 + L G G GK+ L + F + + LI Sbjct: 181 LFLCGGVGLGKTHLMQAIGHYRLEIDPDAKIFYVSTEQFTNDLIAAIRRDSMQSFREHYR 240 Query: 108 -RKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 ++++DI ++ + + F+ NS+H+ +++ + P L SR Sbjct: 241 AADVIMVDDIQFIEGKEYTQEEFFYTFNSLHEAGKQIVLASDRPPSQIPRLQERLISRFS 300 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + I PD + ++ K + + + + YI R ++ E + + A Sbjct: 301 MGLIADIQPPDFETRVAILQKKSEFENMPLPRDVIEYIAARYTSNIRELEGALTRAVAYA 360 Query: 224 LSRGMGITRSLAAEVL 239 G+ +T + A VL Sbjct: 361 SISGLALTLANIAPVL 376 >gi|87198027|ref|YP_495284.1| chromosomal replication initiator protein DnaA [Novosphingobium aromaticivorans DSM 12444] gi|87133708|gb|ABD24450.1| chromosomal replication initiator protein DnaA [Novosphingobium aromaticivorans DSM 12444] Length = 498 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 40/237 (16%), Positives = 84/237 (35%), Gaps = 33/237 (13%) Query: 35 CLGISRDDLLVHSAIEQAV------RLIDSWPSWPSRVVILVGPSGSGKSCLANIW---- 84 ++ + + SA AV I++ P + L G +G GK+ L + Sbjct: 163 DPSLTFAEFVSGSANVLAVNAAQRMAAIEAPQFSP---LYLKGSTGQGKTHLLHAIGHAF 219 Query: 85 -SDKSRSTRFSNIAKSLDSILIDTRKP---------------VLLEDIDLL---DFNDTQ 125 ++K + F A+ + + +L++DI + + Sbjct: 220 AANKPGARIFYCSAERFMIEFVQAMRSNEMIEFKSRLRGFDMLLVDDIQFIIGKASTQEE 279 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 H I+++ L++ A P + L SRL V I D + K++ Sbjct: 280 FLHTIDALMSAGKRLVVAADRAPQALDGVEQRLLSRLSMGLVADIQPADIELRRKILEHR 339 Query: 186 FADRQ-IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 A + + ++ + + R++ ++K+ A G ++ LA E L + Sbjct: 340 LARFGNTQVPSDVVEFLARTINRNVRELVGGLNKLIAYAQLTGQPVSLQLAEEQLTD 396 >gi|296533903|ref|ZP_06896430.1| DNA-directed DNA replication initiator protein [Roseomonas cervicalis ATCC 49957] gi|296265778|gb|EFH11876.1| DNA-directed DNA replication initiator protein [Roseomonas cervicalis ATCC 49957] Length = 365 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 39/254 (15%), Positives = 88/254 (34%), Gaps = 26/254 (10%) Query: 18 NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPS 73 + P+ E + ++ P + D +V E A P+ + L G Sbjct: 14 SSAPRGAESRNDWAAPLDPRFTFDSFVVGKPNEFAHACARRVAEKPASPGFNPLFLYGGV 73 Query: 74 GSGKSCLAN--IWSDKSRSTR--------------FSNIAKSLDSILIDTRKPV---LLE 114 G GK+ L + W+ R + + ++ + V +++ Sbjct: 74 GLGKTHLMHSIAWAISFNGQRNVAYMSAEKFMYRFIAALRSQSTMEFKESLRSVDVLMID 133 Query: 115 DIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 D+ L D + FH N++ ++++A P L +RL V I Sbjct: 134 DLQFLIGKDNTQEEFFHTFNALVDAGKQIVVSADKSPSDLSGLEDRLRTRLGCGMVADIH 193 Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231 + ++ ++ + ++ ++ ++ ++ E ++++ A G IT Sbjct: 194 ATTYELRISILQAKAQGAEVDVPPRVLEFLAHKITSNVRELEGALNRLIAHANLFGRPIT 253 Query: 232 RSLAAEVLKETQQC 245 A EVL + + Sbjct: 254 LESAQEVLHDILRA 267 >gi|148269146|ref|YP_001243606.1| chromosomal replication initiation protein [Thermotoga petrophila RKU-1] gi|166215367|sp|A5IIK7|DNAA_THEP1 RecName: Full=Chromosomal replication initiator protein DnaA gi|147734690|gb|ABQ46030.1| chromosomal replication initiator protein DnaA [Thermotoga petrophila RKU-1] Length = 440 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 85/235 (36%), Gaps = 26/235 (11%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--VILVGPSGSGKSCLAN-------- 82 P + ++ +V A P R + + G G GK+ L Sbjct: 97 PLNPDYTFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQ 156 Query: 83 ---------IWSDKSRSTRFSNIAKSLDSILIDTRK----PVLLEDIDLL---DFNDTQL 126 I S+K + ++ + + + + +L++D+ L T+L Sbjct: 157 NEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKTGVQTEL 216 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH N +H +++ + P L SR + V K+ PD++ + + KM Sbjct: 217 FHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIAKKML 276 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + +++ ++ + ++ +L + K+ + G + A +LK+ Sbjct: 277 EIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLREAILLLKD 331 >gi|114319167|ref|YP_740850.1| chromosomal replication initiation protein [Alkalilimnicola ehrlichii MLHE-1] gi|122312809|sp|Q0ACS7|DNAA_ALHEH RecName: Full=Chromosomal replication initiator protein DnaA gi|114225561|gb|ABI55360.1| chromosomal replication initiator protein DnaA [Alkalilimnicola ehrlichii MLHE-1] Length = 451 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 34/232 (14%), Positives = 82/232 (35%), Gaps = 28/232 (12%) Query: 38 ISRDDLLVHSAIEQAVRL----IDSWPSWPSRVVILVGPSGSGKSCLANI-----WSDKS 88 + D + + + A +++ P + L G G GK+ L + + Sbjct: 120 FTFDTFVEGKSNQLARAASMQVVEN-PGTAYNPLFLYGGVGLGKTHLMHAVGNAMLRRRP 178 Query: 89 RSTRFSNIAKSLDSILIDTR---------------KPVLLEDIDLLDFND---TQLFHII 130 + ++ + ++ +L++DI + + FH Sbjct: 179 EARVLYLHSERFVADMVKALQHNAINEFKRHYRMVDALLIDDIQFFARKERSQEEFFHTF 238 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N++ + + ++MT +P L SR V I P+ + +++ Sbjct: 239 NALLEGEQQVIMTCDRYPKEVNGLEERLKSRFGWGLTVAIEPPELETRVAILMSKALQEG 298 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + ++A +I +R+ ++ E + ++ A G IT E L++ Sbjct: 299 VDLPHEVAFFIAKRIRSNIRELEGALRRVVANAQFTGQEITVEFTKEALRDL 350 >gi|86139417|ref|ZP_01057986.1| chromosomal replication initiation protein [Roseobacter sp. MED193] gi|85823920|gb|EAQ44126.1| chromosomal replication initiation protein [Roseobacter sp. MED193] Length = 472 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 38/263 (14%), Positives = 87/263 (33%), Gaps = 35/263 (13%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILV 70 DK P + + + D+ +V E A ++L Sbjct: 116 DKAAAAAPMDTLQAAPLD----PRFTFDNFVVGKPNELAHAAARRVAEGGPVTFNPLVLY 171 Query: 71 GPSGSGKSCLANI--WSDKSRSTRFSNIAKSLDSI------------------LIDTRKP 110 G G GK+ L + W ++ + + S + L + Sbjct: 172 GGVGLGKTHLMHAIAWEITVQNPSLNVLYLSAEQFMYRFVQALRERKMMDFKHLFRSVDV 231 Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 ++++D+ + D + FH N++ + ++++A P + SRL+ V Sbjct: 232 LMVDDVQFIAGKDSTQEEFFHTFNALVDQNKQIIISADRAPGEIKDLEDRVKSRLQCGLV 291 Query: 168 VKISLPDDDFLEKVIVKMFADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 V + D + ++ +Q + I + ++ R+ ++ E + ++ Sbjct: 292 VDLHPTDYELRLGILQTKVQLQQQTYPDLEIADGVLEFLAHRISTNVRVLEGALTRLFAF 351 Query: 223 ALSRGMGITRSLAAEVLKETQQC 245 A G I L + L + + Sbjct: 352 ASLVGREIDMDLTQDCLADVLRA 374 >gi|117923319|ref|YP_863936.1| chromosomal replication initiator protein DnaA [Magnetococcus sp. MC-1] gi|166214679|sp|A0L3I7|DNAA_MAGSM RecName: Full=Chromosomal replication initiator protein DnaA gi|117607075|gb|ABK42530.1| chromosomal replication initiator protein DnaA [Magnetococcus sp. MC-1] Length = 447 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 38/238 (15%), Positives = 85/238 (35%), Gaps = 30/238 (12%) Query: 35 CLGISRDDLLVHSAIEQA---VRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS--- 88 + D +V + + P+ + + G G GK+ + ++ Sbjct: 113 DPRYTFDSFVVGGCNQFVHAAAARVAEAPAAAYNPLFIHGGVGLGKTHVMQAIGNRVLEI 172 Query: 89 -------------------RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDTQL 126 S RF + ++ + +L++DI + + Sbjct: 173 DPDKRVLYISSENFMTQLINSLRFKRVFDFKEN--FRSVDVLLVDDIQFIAGKKATQEEF 230 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH N++++ ++MTA +FP L SR V + PD + ++ K Sbjct: 231 FHTFNALYEAKKQIVMTADSFPHEIEHLEERLRSRFGMGLVADMQPPDLETRVAILQKKA 290 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 + + ++A ++ ++ ++ E + ++ A G IT +L E LK+ + Sbjct: 291 GSEGLRLADEVAFFLADAVQTNVRELEGALIRVSAYASLTGKPITMALVKESLKDIVR 348 >gi|332674313|gb|AEE71130.1| DNA-directed DNA replication initiator protein [Helicobacter pylori 83] Length = 455 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 84/235 (35%), Gaps = 24/235 (10%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS 90 + ++ +V S + P V+ G +G GK+ + N + + Sbjct: 108 VKDSYTFENFVVGSCNNTVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALE 167 Query: 91 TRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFN---DTQLFHI 129 + + + L D K + LL+D L + + FH Sbjct: 168 KHKKVVLVTSEDFLTDFLKHLDNKTMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEFFHT 227 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N +H +++ + P + L SR + K+ PD + ++ + Sbjct: 228 FNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKCQLN 287 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 +I + +++ YI Q + ++ E + K+ A I +LA VL++ Q+ Sbjct: 288 KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNAPIDLNLAKTVLEDLQK 342 >gi|317178231|dbj|BAJ56020.1| chromosomal replication initiation protein [Helicobacter pylori F16] Length = 455 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 84/235 (35%), Gaps = 24/235 (10%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS 90 + ++ +V S + P V+ G +G GK+ + N + + Sbjct: 108 VKDSYTFENFVVGSCNNTVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALE 167 Query: 91 TRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFN---DTQLFHI 129 + + + L D K + LL+D L + + FH Sbjct: 168 KHKKVVLVTSEDFLTDFLKHLDNKTMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEFFHT 227 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N +H +++ + P + L SR + K+ PD + ++ + Sbjct: 228 FNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKCQLN 287 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 +I + +++ YI Q + ++ E + K+ A I +LA VL++ Q+ Sbjct: 288 KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNAPIDLNLAKTVLEDLQK 342 >gi|317013298|gb|ADU83906.1| chromosomal replication initiation protein [Helicobacter pylori Lithuania75] Length = 455 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 84/235 (35%), Gaps = 24/235 (10%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS 90 + ++ +V S + P V+ G +G GK+ + N + + Sbjct: 108 VKDSYTFENFVVGSCNNTVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALE 167 Query: 91 TRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFN---DTQLFHI 129 + + + L D K + LL+D L + + FH Sbjct: 168 KHKKVVLVTSEDFLTDFLKHLDNKTMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEFFHT 227 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N +H +++ + P + L SR + K+ PD + ++ + Sbjct: 228 FNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKCQLN 287 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 +I + +++ YI Q + ++ E + K+ A I +LA VL++ Q+ Sbjct: 288 KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNAPIDLNLAKTVLEDLQK 342 >gi|308183628|ref|YP_003927755.1| chromosomal replication initiation protein [Helicobacter pylori PeCan4] gi|308065813|gb|ADO07705.1| chromosomal replication initiation protein [Helicobacter pylori PeCan4] Length = 455 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 84/235 (35%), Gaps = 24/235 (10%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS 90 + ++ +V S + P V+ G +G GK+ + N + + Sbjct: 108 VKDSYTFENFVVGSCNNTVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALE 167 Query: 91 TRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFN---DTQLFHI 129 + + + L D K + LL+D L + + FH Sbjct: 168 KHKKVVLVTSEDFLTDFLKHLDNKTMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEFFHT 227 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N +H +++ + P + L SR + K+ PD + ++ + Sbjct: 228 FNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKCQLN 287 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 +I + +++ YI Q + ++ E + K+ A I +LA VL++ Q+ Sbjct: 288 KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNAPIDLNLAKTVLEDLQK 342 >gi|308062788|gb|ADO04676.1| chromosomal replication initiation protein [Helicobacter pylori Cuz20] Length = 455 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 84/235 (35%), Gaps = 24/235 (10%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS 90 + ++ +V S + P V+ G +G GK+ + N + + Sbjct: 108 VKDSYTFENFVVGSCNNTVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALE 167 Query: 91 TRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFN---DTQLFHI 129 + + + L D K + LL+D L + + FH Sbjct: 168 KHKKVVLVTSEDFLTDFLKHLDNKTMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEFFHT 227 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N +H +++ + P + L SR + K+ PD + ++ + Sbjct: 228 FNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKCQLN 287 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 +I + +++ YI Q + ++ E + K+ A I +LA VL++ Q+ Sbjct: 288 KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNAPIDLNLAKTVLEDLQK 342 >gi|208435392|ref|YP_002267058.1| chromosomal replication initiator protein [Helicobacter pylori G27] gi|226735816|sp|B5Z9E3|DNAA_HELPG RecName: Full=Chromosomal replication initiator protein DnaA gi|208433321|gb|ACI28192.1| chromosomal replication initiator protein [Helicobacter pylori G27] Length = 455 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 84/235 (35%), Gaps = 24/235 (10%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS 90 + ++ +V S + P V+ G +G GK+ + N + + Sbjct: 108 VKDSYTFENFVVGSCNNTVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALE 167 Query: 91 TRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFN---DTQLFHI 129 + + + L D K + LL+D L + + FH Sbjct: 168 KHKKVVLVTSEDFLTDFLKHLDNKTMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEFFHT 227 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N +H +++ + P + L SR + K+ PD + ++ + Sbjct: 228 FNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKCQLN 287 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 +I + +++ YI Q + ++ E + K+ A I +LA VL++ Q+ Sbjct: 288 KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNAPIDLNLAKTVLEDLQK 342 >gi|188528299|ref|YP_001910986.1| chromosomal replication initiation protein [Helicobacter pylori Shi470] gi|226735817|sp|B2UVS4|DNAA_HELPS RecName: Full=Chromosomal replication initiator protein DnaA gi|188144539|gb|ACD48956.1| chromosomal replication initiation protein [Helicobacter pylori Shi470] Length = 455 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 84/235 (35%), Gaps = 24/235 (10%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS 90 + ++ +V S + P V+ G +G GK+ + N + + Sbjct: 108 VKDSYTFENFVVGSCNNTVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALE 167 Query: 91 TRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFN---DTQLFHI 129 + + + L D K + LL+D L + + FH Sbjct: 168 KHKKVVLVTSEDFLTDFLKHLDNQTMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEFFHT 227 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N +H +++ + P + L SR + K+ PD + ++ + Sbjct: 228 FNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKCQLN 287 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 +I + +++ YI Q + ++ E + K+ A I +LA VL++ Q+ Sbjct: 288 KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNAPIDLNLAKTVLEDLQK 342 >gi|325478855|gb|EGC81965.1| chromosomal replication initiator protein DnaA [Anaerococcus prevotii ACS-065-V-Col13] Length = 459 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 42/248 (16%), Positives = 91/248 (36%), Gaps = 41/248 (16%) Query: 6 EDYSFFVP-DKQKNDQPKNKEEQLFFSFPRCLGIS---RDDLLVHSAIEQAVRLIDSWPS 61 E+Y+ + K + + + Q+ SFPR ++ + + + A+ + + Sbjct: 88 ENYNKVLTLGKDYDSNGQMRINQVT-SFPRPQLEDENIFENFVEGKSNQYALGVSQAVAQ 146 Query: 62 WPSRV--------VILVGPSGSGKSCLANIWS-----------------DKSRSTRFSNI 96 S + + G SG GK+ L + +K + + + Sbjct: 147 NISNKSQARLYNPLFIYGESGLGKTHLMQAIAHEILDNRDDAYVMYLSSEKFTNEMIAAL 206 Query: 97 AKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVS 150 + + + + V L++DI + + + FH N ++ +++++ P Sbjct: 207 RSTKNEKFREKYRSVDILLIDDIQFIAGKEGTQEEFFHTFNDLYNTGKQIVISSDRPPKE 266 Query: 151 WGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME--- 206 L D L SR +V I PD + ++ K +ID ++ YI + ++ Sbjct: 267 IK-RLEDRLVSRFSWGIIVDIGKPDFETRVAILQKKLDQLGAYIDNEILFYIAENIDTNI 325 Query: 207 RSLVFAEK 214 R L A Sbjct: 326 RDLEGALS 333 >gi|313112577|ref|ZP_07798238.1| replication initiator protein DnaA [Faecalibacterium cf. prausnitzii KLE1255] gi|310625099|gb|EFQ08393.1| replication initiator protein DnaA [Faecalibacterium cf. prausnitzii KLE1255] Length = 440 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 39/263 (14%), Positives = 90/263 (34%), Gaps = 38/263 (14%) Query: 11 FVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW---PSWPSRVV 67 V +Q P + + F+F ++ + + + A + PS + Sbjct: 89 VVLAQQYEANPASPQGNYEFTF--------ENFIKGPSNQFAFAAAQAVAANPSGAYNPL 140 Query: 68 ILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSIL---IDT 107 + G SG GK+ L ++ + + I Sbjct: 141 FIYGGSGLGKTHLLTAIQTEIKRTHPDFVIMYVTCEQFTNELIAAIRAGSTEDFRMKYRV 200 Query: 108 RKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164 +L++DI + + + FH NS+H +++ + L +R + Sbjct: 201 ADLLLVDDIQFIAGKESTQEEFFHTFNSLHDAHKQIVIASDRPAKEIKSLEERLRTRFEW 260 Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 + PD + ++ + + + + +A +I ++ ++ E V K++ + Sbjct: 261 GLTADVQPPDFETRVAIVKRKAELLHLDLPEDVAEFIANHLKNNIRQLEGAVKKLNAYYM 320 Query: 225 SRGMGITRSLA----AEVLKETQ 243 G+ S+A ++L ETQ Sbjct: 321 LEGIQPVISVAQNAIKDILNETQ 343 >gi|295101863|emb|CBK99408.1| chromosomal replication initiator protein DnaA [Faecalibacterium prausnitzii L2-6] Length = 440 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 39/263 (14%), Positives = 90/263 (34%), Gaps = 38/263 (14%) Query: 11 FVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW---PSWPSRVV 67 V +Q P + + F+F ++ + + + A + PS + Sbjct: 89 VVLAQQYEANPASPQGNYEFTF--------ENFIKGPSNQFAFAAAQAVAANPSGAYNPL 140 Query: 68 ILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSIL---IDT 107 + G SG GK+ L ++ + + I Sbjct: 141 FIYGGSGLGKTHLLTAIQTEIKRTHPDFVIMYVTCEQFTNELIAAIRAGSTEDFRMKYRV 200 Query: 108 RKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164 +L++DI + + + FH NS+H +++ + L +R + Sbjct: 201 ADLLLVDDIQFIAGKESTQEEFFHTFNSLHDAHKQIVIASDRPAKEIKSLEERLRTRFEW 260 Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 + PD + ++ + + + + +A +I ++ ++ E V K++ + Sbjct: 261 GLTADVQPPDFETRVAIVKRKAELLHLDLPEDVAEFIANHLKNNIRQLEGAVKKLNAYYM 320 Query: 225 SRGMGITRSLA----AEVLKETQ 243 G+ S+A ++L ETQ Sbjct: 321 LEGIQPVISVAQNAIKDILNETQ 343 >gi|257437736|ref|ZP_05613491.1| DNA replication initiator protein, ATPase [Faecalibacterium prausnitzii A2-165] gi|257200043|gb|EEU98327.1| DNA replication initiator protein, ATPase [Faecalibacterium prausnitzii A2-165] Length = 440 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 39/263 (14%), Positives = 90/263 (34%), Gaps = 38/263 (14%) Query: 11 FVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW---PSWPSRVV 67 V +Q P + + F+F ++ + + + A + PS + Sbjct: 89 VVLAQQYEANPASPQGNYEFTF--------ENFIKGPSNQFAFAAAQAVAANPSGAYNPL 140 Query: 68 ILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSIL---IDT 107 + G SG GK+ L ++ + + I Sbjct: 141 FIYGGSGLGKTHLLTAIQTEIKRTHPDFVIMYVTCEQFTNELIAAIRAGSTEDFRMKYRV 200 Query: 108 RKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164 +L++DI + + + FH NS+H +++ + L +R + Sbjct: 201 ADLLLVDDIQFIAGKESTQEEFFHTFNSLHDAHKQIVIASDRPAKEIKSLEERLRTRFEW 260 Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 + PD + ++ + + + + +A +I ++ ++ E V K++ + Sbjct: 261 GLTADVQPPDFETRVAIVKRKAELLHLDLPEDVAEFIANHLKNNIRQLEGAVKKLNAYYM 320 Query: 225 SRGMGITRSLA----AEVLKETQ 243 G+ S+A ++L ETQ Sbjct: 321 LEGIQPVISVAQNAIKDILNETQ 343 >gi|160944267|ref|ZP_02091496.1| hypothetical protein FAEPRAM212_01776 [Faecalibacterium prausnitzii M21/2] gi|158444449|gb|EDP21453.1| hypothetical protein FAEPRAM212_01776 [Faecalibacterium prausnitzii M21/2] gi|295103715|emb|CBL01259.1| chromosomal replication initiator protein DnaA [Faecalibacterium prausnitzii SL3/3] Length = 440 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 39/263 (14%), Positives = 90/263 (34%), Gaps = 38/263 (14%) Query: 11 FVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW---PSWPSRVV 67 V +Q P + + F+F ++ + + + A + PS + Sbjct: 89 VVLAQQYEANPASPQGNYEFTF--------ENFIKGPSNQFAFAAAQAVAANPSGAYNPL 140 Query: 68 ILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSIL---IDT 107 + G SG GK+ L ++ + + I Sbjct: 141 FIYGGSGLGKTHLLTAIQTEIKRTHPDFVIMYVTCEQFTNELIAAIRAGSTEDFRMKYRV 200 Query: 108 RKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164 +L++DI + + + FH NS+H +++ + L +R + Sbjct: 201 ADLLLVDDIQFIAGKESTQEEFFHTFNSLHDAHKQIVIASDRPAKEIKSLEERLRTRFEW 260 Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 + PD + ++ + + + + +A +I ++ ++ E V K++ + Sbjct: 261 GLTADVQPPDFETRVAIVKRKAELLHLDLPEDVAEFIANHLKNNIRQLEGAVKKLNAYYM 320 Query: 225 SRGMGITRSLA----AEVLKETQ 243 G+ S+A ++L ETQ Sbjct: 321 LEGIQPVISVAQNAIKDILNETQ 343 >gi|296167143|ref|ZP_06849550.1| DNA-directed DNA replication initiator protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897465|gb|EFG77064.1| DNA-directed DNA replication initiator protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 518 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 35/233 (15%), Positives = 86/233 (36%), Gaps = 28/233 (12%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRF 93 + D ++ ++ A + P+R + + G SG GK+ L + + F Sbjct: 182 RYTFDTFVIGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHA-AGNYAQRLF 240 Query: 94 SNI---AKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFHI 129 + S + D + L++DI ++ + + FH Sbjct: 241 PGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHT 300 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N++H + +++++ P L +R + + + P+ + ++ K Sbjct: 301 FNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQME 360 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ + + I +ER++ E + ++ A I ++LA VL++ Sbjct: 361 RLAVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDL 413 >gi|282890628|ref|ZP_06299151.1| hypothetical protein pah_c022o239 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499625|gb|EFB41921.1| hypothetical protein pah_c022o239 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 464 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 36/242 (14%), Positives = 86/242 (35%), Gaps = 40/242 (16%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDS------------WPS 61 + + PK L F + D ++ + A +L+ P+ Sbjct: 94 GQAETAPPKFH---LSFD-QVDPYCTFDQFVISESNLLAHKLLCKITGFDSVSKTFIPPT 149 Query: 62 ---WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNI---AKSLDSILIDTRKP----- 110 + L G G+GK+ L +D R S I A++ ++ + Sbjct: 150 SDLAAFNPIYLYGKEGTGKTHLLMATADALRKQGLSAIYTRAETFTEHVVGAIRAGEMST 209 Query: 111 ----------VLLEDID---LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 +L++D+ +LFH N++H +++++ P + P Sbjct: 210 FRQAYRNIDVLLIDDVHVFSRKGATQEELFHTFNTLHLSGKQIVLSSHCLPGDLQLIEPR 269 Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 L SR + V+ + + ++++ + ++ K++ Y+++ S K ++ Sbjct: 270 LVSRFEWGIVLPLESLNIQEKQEMLSRKARAFNYLLNPKVSQYLLETFTSSTKALVKALE 329 Query: 218 KM 219 + Sbjct: 330 AL 331 >gi|308232614|ref|ZP_07416626.2| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu001] gi|308369280|ref|ZP_07417156.2| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu002] gi|308371505|ref|ZP_07425168.2| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu003] gi|308371555|ref|ZP_07425297.2| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu004] gi|308372785|ref|ZP_07429832.2| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu005] gi|308378519|ref|ZP_07482837.2| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu009] gi|308379669|ref|ZP_07487069.2| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu010] gi|308380868|ref|ZP_07491286.2| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu011] gi|308213439|gb|EFO72838.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu001] gi|308328156|gb|EFP17007.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu002] gi|308328618|gb|EFP17469.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu003] gi|308336273|gb|EFP25124.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu004] gi|308339879|gb|EFP28730.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu005] gi|308352300|gb|EFP41151.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu009] gi|308356303|gb|EFP45154.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu010] gi|308360190|gb|EFP49041.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu011] Length = 496 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 35/233 (15%), Positives = 86/233 (36%), Gaps = 28/233 (12%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRF 93 + D ++ ++ A + P+R + + G SG GK+ L + + F Sbjct: 160 RYTFDTFVIGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHA-AGNYAQRLF 218 Query: 94 SNI---AKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFHI 129 + S + D + L++DI ++ + + FH Sbjct: 219 PGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHT 278 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N++H + +++++ P L +R + + + P+ + ++ K Sbjct: 279 FNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQME 338 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ + + I +ER++ E + ++ A I ++LA VL++ Sbjct: 339 RLAVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDL 391 >gi|331086957|ref|ZP_08336033.1| chromosomal replication initiator protein dnaA [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409618|gb|EGG89057.1| chromosomal replication initiator protein dnaA [Lachnospiraceae bacterium 9_1_43BFAA] Length = 456 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 45/249 (18%), Positives = 88/249 (35%), Gaps = 39/249 (15%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLAN-----IWSD 86 + D +V A + P + L G G GK+ L + I + Sbjct: 111 NPKYTFDTFVVGGNNNFAHAASLAVAESPGEVYNPLFLYGGVGLGKTHLMHSIAHFILEN 170 Query: 87 KSRSTRFSNIAKSLDSILIDTRK---------------------PVLLEDIDLLDFND-- 123 + +++ + LI+ K +L++DI + + Sbjct: 171 EPEKKVLYVTSETFTNELIEAIKNGKTGNESAMTAFREKYRSIDVLLIDDIQFIIGKEST 230 Query: 124 -TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 + FH N +H +++++ P L SR + V IS PD + ++ Sbjct: 231 QEEFFHTFNHLHISGKQIIISSDKPPKDIETLEARLRSRFECGLVADISSPDYETRMAIL 290 Query: 183 VKMFADRQIF---IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM--GITRSLAAE 237 K + I + YI ++ ++ E ++K+ +AL + I +LAAE Sbjct: 291 RKKEELDGLDKYNIPDAVMQYIASNVKSNIRELEGSLNKL--IALYKLKNAPIDINLAAE 348 Query: 238 VLKETQQCD 246 LK+ + Sbjct: 349 ALKDIVSPN 357 >gi|325663383|ref|ZP_08151833.1| chromosomal replication initiator protein dnaA [Lachnospiraceae bacterium 4_1_37FAA] gi|325470837|gb|EGC74067.1| chromosomal replication initiator protein dnaA [Lachnospiraceae bacterium 4_1_37FAA] Length = 452 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 45/249 (18%), Positives = 88/249 (35%), Gaps = 39/249 (15%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLAN-----IWSD 86 + D +V A + P + L G G GK+ L + I + Sbjct: 111 NPKYTFDTFVVGGNNNFAHAASLAVAESPGEVYNPLFLYGGVGLGKTHLMHSIAHFILEN 170 Query: 87 KSRSTRFSNIAKSLDSILIDTRK---------------------PVLLEDIDLLDFND-- 123 + +++ + LI+ K +L++DI + + Sbjct: 171 EPEKKVLYVTSETFTNELIEAIKNGKTGNESAMTAFREKYRSIDVLLIDDIQFIIGKEST 230 Query: 124 -TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 + FH N +H +++++ P L SR + V IS PD + ++ Sbjct: 231 QEEFFHTFNHLHISGKQIIISSDKPPKDIETLEARLRSRFECGLVADISSPDYETRMAIL 290 Query: 183 VKMFADRQIF---IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM--GITRSLAAE 237 K + I + YI ++ ++ E ++K+ +AL + I +LAAE Sbjct: 291 RKKEELDGLDKYNIPDAVMQYIASNVKSNIRELEGSLNKL--IALYKLKNAPIDINLAAE 348 Query: 238 VLKETQQCD 246 LK+ + Sbjct: 349 ALKDIVSPN 357 >gi|25026557|ref|NP_736611.1| chromosomal replication initiation protein [Corynebacterium efficiens YS-314] gi|38257617|sp|Q8FUL7|DNAA_COREF RecName: Full=Chromosomal replication initiator protein DnaA gi|23491836|dbj|BAC16811.1| putative chromosomal replication initiator protein DnaA [Corynebacterium efficiens YS-314] Length = 573 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 36/251 (14%), Positives = 94/251 (37%), Gaps = 30/251 (11%) Query: 17 KNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPS 73 + N ++ + + ++ ++ A + P++ + + G S Sbjct: 220 RETPAHNPNREVSLN----PKYTFENFVIGPFNRFANAAAVAVAESPAKAFNPLFISGGS 275 Query: 74 GSGKSCLANI----WSDKSRSTRFSNIA------KSLDSILIDTRKP----------VLL 113 G GK+ L + + R ++ ++S+ D ++ +++ Sbjct: 276 GLGKTHLLHAVGNYAQELQPGLRIKYVSSEEFTNDYINSVRDDRQESFKRRYRNLDILMV 335 Query: 114 EDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 +DI L + + FH N++HQ + +++++ P L +R + + I Sbjct: 336 DDIQFLAGKEGTQEEFFHTFNALHQAEKQIILSSDRPPRQLTTLEDRLRTRFEGGLITDI 395 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 PD + +++K +D+++ I R E S+ E + ++ + I Sbjct: 396 QPPDLETRIAILMKKAQADGTHVDREVLELIASRFESSIRELEGALIRVSAYSSLINQPI 455 Query: 231 TRSLAAEVLKE 241 + +A L++ Sbjct: 456 DKEMAIVALRD 466 >gi|210614348|ref|ZP_03290167.1| hypothetical protein CLONEX_02381 [Clostridium nexile DSM 1787] gi|210150692|gb|EEA81701.1| hypothetical protein CLONEX_02381 [Clostridium nexile DSM 1787] Length = 461 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 43/251 (17%), Positives = 85/251 (33%), Gaps = 41/251 (16%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSD----- 86 + D +V A + P + L G G GK+ L + + Sbjct: 114 NPKYTFDTFVVGGNNNFAHAASLAVSESPGEIYNPLFLYGGVGLGKTHLMHSIAHFILEK 173 Query: 87 ----------------------KSRSTRFSN-IAKSLDSILIDTRKPVLLEDIDLLDFND 123 KS T N +A + +L++D+ + + Sbjct: 174 DPTKKVLYVTSETFTNELIEALKSGKTSGGNELAMTAFREKYRNIDVLLIDDVQFIIGKE 233 Query: 124 ---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 + FH N +H +++++ P L +R + + IS PD + Sbjct: 234 STQEEFFHTFNHLHVSGKQIIISSDKPPKDIETLEARLRTRFEWGLIADISSPDYETRMA 293 Query: 181 VIVKMFADRQI---FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM--GITRSLA 235 ++ K + I ++ YI ++ ++ E ++K+ +AL + I LA Sbjct: 294 ILRKKEELDGLQKYHISNEVMQYIATNVKSNIRELEGSLNKL--IALHKLKNEEINIMLA 351 Query: 236 AEVLKETQQCD 246 AE LK+ + Sbjct: 352 AEALKDIVSPN 362 >gi|259508311|ref|ZP_05751211.1| chromosomal replication initiator protein DnaA [Corynebacterium efficiens YS-314] gi|259164129|gb|EEW48683.1| chromosomal replication initiator protein DnaA [Corynebacterium efficiens YS-314] Length = 566 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 36/251 (14%), Positives = 94/251 (37%), Gaps = 30/251 (11%) Query: 17 KNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPS 73 + N ++ + + ++ ++ A + P++ + + G S Sbjct: 213 RETPAHNPNREVSLN----PKYTFENFVIGPFNRFANAAAVAVAESPAKAFNPLFISGGS 268 Query: 74 GSGKSCLANI----WSDKSRSTRFSNIA------KSLDSILIDTRKP----------VLL 113 G GK+ L + + R ++ ++S+ D ++ +++ Sbjct: 269 GLGKTHLLHAVGNYAQELQPGLRIKYVSSEEFTNDYINSVRDDRQESFKRRYRNLDILMV 328 Query: 114 EDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 +DI L + + FH N++HQ + +++++ P L +R + + I Sbjct: 329 DDIQFLAGKEGTQEEFFHTFNALHQAEKQIILSSDRPPRQLTTLEDRLRTRFEGGLITDI 388 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 PD + +++K +D+++ I R E S+ E + ++ + I Sbjct: 389 QPPDLETRIAILMKKAQADGTHVDREVLELIASRFESSIRELEGALIRVSAYSSLINQPI 448 Query: 231 TRSLAAEVLKE 241 + +A L++ Sbjct: 449 DKEMAIVALRD 459 >gi|108563812|ref|YP_628128.1| chromosomal replication initiation protein [Helicobacter pylori HPAG1] gi|123246872|sp|Q1CRG8|DNAA_HELPH RecName: Full=Chromosomal replication initiator protein DnaA gi|107837585|gb|ABF85454.1| chromosomal replication initiator protein [Helicobacter pylori HPAG1] Length = 455 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 84/235 (35%), Gaps = 24/235 (10%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS 90 + ++ +V S + P V+ G +G GK+ + N + + Sbjct: 108 VKDSYTFENFVVGSCNNTVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALE 167 Query: 91 TRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFN---DTQLFHI 129 + + + L D K + LL+D L + + FH Sbjct: 168 KHKKVVLVTSEDFLTDFLKHLDNKTMDSFKAKYRHCDFFLLDDAQFLQGKPKLEEEFFHT 227 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N +H +++ + P + L SR + K+ PD + ++ + Sbjct: 228 FNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKCQLN 287 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 QI + +++ YI Q + ++ E + K+ A I +LA VL++ Q+ Sbjct: 288 QIILPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNASIDLNLAKTVLEDLQK 342 >gi|315654389|ref|ZP_07907297.1| DNA-directed DNA replication initiator protein [Mobiluncus curtisii ATCC 51333] gi|315491424|gb|EFU81041.1| DNA-directed DNA replication initiator protein [Mobiluncus curtisii ATCC 51333] Length = 483 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 81/235 (34%), Gaps = 26/235 (11%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW------- 84 + D ++ S+ A + + P+ + + G G GK+ L + Sbjct: 143 NPTYTFDSFVIGSSNSFTAAAAESVVASPAKAYNPLFIYGGPGLGKTHLLHAIGNYALEL 202 Query: 85 ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFNDTQL---FH 128 S++ + + IA + + V L++DI L + L FH Sbjct: 203 YPDSKVKYISSEEFTNEFINAIASQTFAEFQARYREVDFLLIDDIQFLAGKEQTLEEFFH 262 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H +++T+ P + SRL+ + I P + ++ + Sbjct: 263 TFNTLHTAQKQVVITSDVAPKELKGFEERVRSRLEWGLMADIQPPSLETRIAILRRKAQA 322 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 + + +A +I ++ + E + ++ + T A +++ Sbjct: 323 GNMQMPDDVAEFIASNVDSDIRALEGALIRVTAYWSLNHVPATIETAKLAIRDLM 377 >gi|75906226|ref|YP_320522.1| chromosomal replication initiation protein [Anabaena variabilis ATCC 29413] gi|123745335|sp|Q3MHA9|DNAA_ANAVT RecName: Full=Chromosomal replication initiator protein DnaA gi|75699951|gb|ABA19627.1| chromosomal replication initiator protein, DnaA [Anabaena variabilis ATCC 29413] Length = 460 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 46/247 (18%), Positives = 84/247 (34%), Gaps = 36/247 (14%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSC 79 N+ Q SR +V + A + P R + L G G GK+ Sbjct: 109 NQNRQPNTELNAKYVFSR--FVVGANNRMAHAASLAVAESPGREFNPLFLCGGVGLGKTH 166 Query: 80 LANI-----WSDKSRSTRFSNIAKSLDSILI---------------DTRKPVLLEDIDLL 119 L W S F + + LI +L++DI + Sbjct: 167 LMQAIGHYRWEICPDSKIFYVSTEQFTNDLITAIRNDSMQSFREHYRAADVLLVDDIQFI 226 Query: 120 DFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 + + + FH N++H+ +++ + P LCSR + I PD + Sbjct: 227 EGKEYTQEEFFHTFNTLHEAGKQVVIASDRPPNQIPSLQERLCSRFSMGLIADIQAPDLE 286 Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR----GMGITR 232 ++ K +I + + + YI ++ E + + AL+ G+ +T Sbjct: 287 TRMAILQKKSEYEKIRLPRDVIEYIATNFTSNIRELEGALTR----ALAYISIWGLPMTV 342 Query: 233 SLAAEVL 239 + A VL Sbjct: 343 ANLAPVL 349 >gi|291446132|ref|ZP_06585522.1| chromosomal replication initiator protein dnaA [Streptomyces roseosporus NRRL 15998] gi|291349079|gb|EFE75983.1| chromosomal replication initiator protein dnaA [Streptomyces roseosporus NRRL 15998] Length = 625 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 87/235 (37%), Gaps = 28/235 (11%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90 D ++ ++ A + P+ + + G SG GK+ L + +RS Sbjct: 287 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSL 346 Query: 91 -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128 R+ + + + + R +L++DI L + + FH Sbjct: 347 YPGTRVRYVSSEEFTNEFINSIRDGKGDTFRKRYRDVDILLVDDIQFLASKESTQEEFFH 406 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 N++H + +++++ P V L D L +R + + P+ + ++ K Sbjct: 407 TFNTLHNANKQIVLSSDRPPKQL-VTLEDRLRNRFEWGLTTDVQPPELETRIAILRKKAV 465 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 Q+ ++ +I R+ R++ E + ++ A + L VLK+ Sbjct: 466 QEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDL 520 >gi|256374161|ref|YP_003097821.1| chromosomal replication initiation protein [Actinosynnema mirum DSM 43827] gi|255918464|gb|ACU33975.1| chromosomal replication initiator protein DnaA [Actinosynnema mirum DSM 43827] Length = 577 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 37/252 (14%), Positives = 94/252 (37%), Gaps = 32/252 (12%) Query: 17 KNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPS 73 + P + + +L + D ++ ++ A + P+ + + G S Sbjct: 217 RPANPASSQTRL------NEKYNFDTFVIGASNRFAHAAAVAVAEAPARAYNPLFIWGES 270 Query: 74 GSGKSCLANIWSDKSRS------TRFSNIAKSLDSILIDTRK--------------PVLL 113 G GK+ L + ++ R+ + + + + R +L+ Sbjct: 271 GLGKTHLLHAVGHYAQRLFPGMRVRYVSTEEFTNDFINSLRDDRKVAFQRRYRDIDVLLV 330 Query: 114 EDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 +DI L+ + + FH N++H + +++++ P L +R + + I Sbjct: 331 DDIQFLEGKEGTQEEFFHTFNTLHNSNKQIVVSSDRPPKRLETLEDRLRTRFEWGLITDI 390 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 P+ + ++ K A ++ ++ +I R+ R++ E + ++ A + Sbjct: 391 QPPELETRIAILRKKAAQDRLAAPAEVLEFIAARVVRNIRELEGALIRVTAFASLNRQPV 450 Query: 231 TRSLAAEVLKET 242 LA VL++ Sbjct: 451 DVQLAEIVLRDL 462 >gi|308064285|gb|ADO06172.1| chromosomal replication initiation protein [Helicobacter pylori Sat464] Length = 455 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 84/235 (35%), Gaps = 24/235 (10%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS 90 + ++ +V S + P V+ G +G GK+ + N + + Sbjct: 108 VKDSYTFENFVVGSCNNTVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHAIQ 167 Query: 91 TRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFN---DTQLFHI 129 + + + L D K + LL+D L + + FH Sbjct: 168 KHKKVVLVTSEDFLTDFLKHLDNQTMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEFFHT 227 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N +H +++ + P + L SR + K+ PD + ++ + Sbjct: 228 FNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKCQLN 287 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 +I + +++ YI Q + ++ E + K+ A I +LA VL++ Q+ Sbjct: 288 KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNAPIDLNLAKTVLEDLQK 342 >gi|22298146|ref|NP_681393.1| chromosomal replication initiation protein [Thermosynechococcus elongatus BP-1] gi|38257592|sp|Q8DL93|DNAA_THEEB RecName: Full=Chromosomal replication initiator protein DnaA gi|22294325|dbj|BAC08155.1| chromosomal replication initiator protein [Thermosynechococcus elongatus BP-1] Length = 453 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 41/240 (17%), Positives = 78/240 (32%), Gaps = 34/240 (14%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW------- 84 +V A + P R + L G G GK+ L Sbjct: 114 NPKYVFSRYVVGPNNRMAHAACLAVAESPGREFNPLFLCGGVGLGKTHLMQAIGHYRLEI 173 Query: 85 ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128 +++ + + I K + + V L++DI ++ + + FH Sbjct: 174 DPNAKIFYVSTEQFTNDLIAAIRKDSMQSFREHYRAVDVMLVDDIQFIEGKEYTQEEFFH 233 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H+ +++ + P LCSR + I PD + ++ K Sbjct: 234 TFNTLHEAGKQVVLASDRPPSQIPRLQERLCSRFSMGLIADIQPPDLETRMAILQKKAEY 293 Query: 189 RQIFIDKKLAAYIVQRME---RSLV-FAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 I + +++ YI R L + V + G+ +T A VL T + Sbjct: 294 ENIRLPREVIEYIAASYTSNIRELEGALIRAVAYIS----ISGLPMTVENIAPVLSPTVR 349 >gi|309804058|ref|ZP_07698139.1| chromosomal replication initiator protein DnaA [Lactobacillus iners LactinV 11V1-d] gi|309804898|ref|ZP_07698960.1| chromosomal replication initiator protein DnaA [Lactobacillus iners LactinV 09V1-c] gi|309809771|ref|ZP_07703625.1| chromosomal replication initiator protein DnaA [Lactobacillus iners SPIN 2503V10-D] gi|312871204|ref|ZP_07731302.1| chromosomal replication initiator protein DnaA [Lactobacillus iners LEAF 3008A-a] gi|312873305|ref|ZP_07733360.1| chromosomal replication initiator protein DnaA [Lactobacillus iners LEAF 2052A-d] gi|312874899|ref|ZP_07734918.1| chromosomal replication initiator protein DnaA [Lactobacillus iners LEAF 2053A-b] gi|325912307|ref|ZP_08174704.1| chromosomal replication initiator protein DnaA [Lactobacillus iners UPII 143-D] gi|329919771|ref|ZP_08276722.1| chromosomal replication initiator protein DnaA [Lactobacillus iners SPIN 1401G] gi|308163826|gb|EFO66092.1| chromosomal replication initiator protein DnaA [Lactobacillus iners LactinV 11V1-d] gi|308165837|gb|EFO68058.1| chromosomal replication initiator protein DnaA [Lactobacillus iners LactinV 09V1-c] gi|308169950|gb|EFO71989.1| chromosomal replication initiator protein DnaA [Lactobacillus iners SPIN 2503V10-D] gi|311089644|gb|EFQ48069.1| chromosomal replication initiator protein DnaA [Lactobacillus iners LEAF 2053A-b] gi|311091185|gb|EFQ49574.1| chromosomal replication initiator protein DnaA [Lactobacillus iners LEAF 2052A-d] gi|311093218|gb|EFQ51564.1| chromosomal replication initiator protein DnaA [Lactobacillus iners LEAF 3008A-a] gi|325475966|gb|EGC79135.1| chromosomal replication initiator protein DnaA [Lactobacillus iners UPII 143-D] gi|328937118|gb|EGG33546.1| chromosomal replication initiator protein DnaA [Lactobacillus iners SPIN 1401G] Length = 453 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 38/238 (15%), Positives = 82/238 (34%), Gaps = 26/238 (10%) Query: 31 SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW--- 84 + D + + A + P + + G G GK+ L Sbjct: 114 DLQLNSKYTFDTFVQGEGNKLAAGAALAVADNPGSFYNPLFIFGGVGLGKTHLMQAIGHQ 173 Query: 85 --SDKSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---T 124 ++K+ + +++ + I++ K +L++DI + Sbjct: 174 MLTEKANAKIVYIQSETFVNDFINSIKNKTQDLFREKYRTCDLLLVDDIQFFAKKEGIQE 233 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + FH +++ ++MT+ P L SR V+I+ PD + ++ K Sbjct: 234 EFFHTFETLYNDQKQIVMTSDRLPNEIPDLSERLVSRFAWGLQVEITPPDLETRIAILRK 293 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + ID Y+ +++ ++ E + K+ A I +LA E L + Sbjct: 294 KAEADGLGIDDNTLDYVASQVDTNIRELEGALVKVQAHATIEREDINLNLAKEALADL 351 >gi|261838801|gb|ACX98567.1| chromosomal replication initiator protein [Helicobacter pylori 51] Length = 455 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 84/235 (35%), Gaps = 24/235 (10%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS 90 + ++ +V S + P V+ G +G GK+ + N + + Sbjct: 108 VKDSYTFENFVVGSCNNTVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALE 167 Query: 91 TRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFN---DTQLFHI 129 + + + L + K + LL+D L + + FH Sbjct: 168 KHKKVVLVTSEDFLTEFLKHLDNKTMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEFFHT 227 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N +H +++ + P + L SR + K+ PD + ++ + Sbjct: 228 FNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKCQLN 287 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 +I + +++ YI Q + ++ E + K+ A I +LA VL++ Q+ Sbjct: 288 KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNASLMNAPIDLNLAKTVLEDLQK 342 >gi|297621234|ref|YP_003709371.1| Chromosomal replication initiator protein dnaA [Waddlia chondrophila WSU 86-1044] gi|297376535|gb|ADI38365.1| Chromosomal replication initiator protein dnaA [Waddlia chondrophila WSU 86-1044] Length = 466 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 41/275 (14%), Positives = 90/275 (32%), Gaps = 47/275 (17%) Query: 15 KQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLI---------------DSW 59 K KN P L F + D + + A +L+ + Sbjct: 98 KVKNIPPAFT---LAFD-ELDPLFTFDHFIPSESNLLAHKLLFKTTNYDPISSQVVSNPS 153 Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV-------- 111 + L G G+GK+ L + + + ++ + + Sbjct: 154 ELASFNPIFLFGGKGTGKTHLLMATAHAINCSHKKALYVRSETFTVHVVSAIRAGEMSLF 213 Query: 112 ----------LLEDIDLLD---FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158 L++D+ L +LFH N++H ++++A P P L Sbjct: 214 RQAYRSVDVLLIDDVHLFSKKWATQEELFHTFNALHLAGKQIILSANCAPQELQHIEPRL 273 Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218 SR + V+ ++ + + KVI + + K+ ++++ + ++ Sbjct: 274 ISRFEWGIVLPLNPLPKEDMRKVIQRKAKAFDTQLHPKVEEFLLEMFSSTTNSIAAALES 333 Query: 219 MD---NLALSRGM----GITRSLAAEVLKETQQCD 246 + +L + IT LA +LK+ + + Sbjct: 334 LLMRHHLRMREQKKASAPITVQLAKHLLKDLIEKE 368 >gi|254442816|ref|ZP_05056292.1| chromosomal replication initiator protein DnaA [Verrucomicrobiae bacterium DG1235] gi|198257124|gb|EDY81432.1| chromosomal replication initiator protein DnaA [Verrucomicrobiae bacterium DG1235] Length = 461 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 30/234 (12%), Positives = 83/234 (35%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLAN-----IWSD 86 + ++ ++ S + A + P+ + L G +G GK+ L + I ++ Sbjct: 126 NPRNTFENFVIGSNSQLAHAASIAVAHAPAGAYNPLFLYGETGLGKTHLMHAVGHHILAN 185 Query: 87 KSRSTRFSNIAKSLDSILIDTR---------------KPVLLEDIDLLDFND---TQLFH 128 + + ++ + I +L++D+ L + + FH Sbjct: 186 RPEARVVYLSSEKFTNEFISAIQENTLTKFRQRYRNVDVLLIDDVQFLSGKERIQEEFFH 245 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N + + + +++ L SR + V I PD + ++ K Sbjct: 246 TFNDLFESQKQIFLSSDRPANEIAKLESRLVSRFQWGLVTDIQAPDFETRVAILRKKALQ 305 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 I ++ +I + + +++ E + K+ + + + ++ ++L + Sbjct: 306 HNYDISDEVLHFIAKHIVKNIRRLEGALIKVCSYSSLTNKPLNIAICEQLLSDV 359 >gi|182437493|ref|YP_001825212.1| chromosomal replication initiation protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|226735850|sp|B1VPF0|DNAA_STRGG RecName: Full=Chromosomal replication initiator protein DnaA gi|178466009|dbj|BAG20529.1| putative replication initiator protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 622 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 87/235 (37%), Gaps = 28/235 (11%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90 D ++ ++ A + P+ + + G SG GK+ L + +RS Sbjct: 284 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSL 343 Query: 91 -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128 R+ + + + + R +L++DI L + + FH Sbjct: 344 YPGTRVRYVSSEEFTNEFINSIRDGKGDTFRKRYRDVDILLVDDIQFLASKESTQEEFFH 403 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 N++H + +++++ P V L D L +R + + P+ + ++ K Sbjct: 404 TFNTLHNANKQIVLSSDRPPKQL-VTLEDRLRNRFEWGLTTDVQPPELETRIAILRKKAV 462 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 Q+ ++ +I R+ R++ E + ++ A + L VLK+ Sbjct: 463 QEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDL 517 >gi|260904981|ref|ZP_05913303.1| chromosomal replication initiator protein DnaA [Brevibacterium linens BL2] Length = 544 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 40/238 (16%), Positives = 84/238 (35%), Gaps = 31/238 (13%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANI---WSDKS 88 + D ++ ++ A + + + G SG GK+ L + ++ + Sbjct: 200 NPKYTFDTFVIGASNRFAHAAAFAVAEAPAKAYNPLFIYGDSGLGKTHLLHAIGYYATQL 259 Query: 89 -------------------RSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND--- 123 + S + SL + V +++DI L D Sbjct: 260 FPEIRVKYVSSEEFVNDFINTIGSSKTSNSLRPAFQRRYREVDILMIDDIQFLQGKDATV 319 Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 + FH N++H +++T+ P L SR + + + PD + ++ Sbjct: 320 EEFFHTFNALHNEVKQVVITSDQPPKMLKGFEERLRSRFEWGLLTDVQPPDMETRFAILR 379 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + A Q+ + + YI R+ ++ E + ++ A + SLA VLK+ Sbjct: 380 RKAAGEQLDVPNDVLEYIASRISSNIRELEGALIRVTAFANLNDQQVDVSLAETVLKD 437 >gi|11132615|sp|Q9ZH75|DNAA_STRCH RecName: Full=Chromosomal replication initiator protein DnaA gi|3800785|gb|AAD08807.1| DNA replication initiator protein [Streptomyces anulatus] Length = 624 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 87/235 (37%), Gaps = 28/235 (11%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90 D ++ ++ A + P+ + + G SG GK+ L + +RS Sbjct: 286 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSL 345 Query: 91 -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128 R+ + + + + R +L++DI L + + FH Sbjct: 346 YPGTRVRYVSSEEFTNEFINSIRDGKGDTFRKRYRDVDILLVDDIQFLASKESTQEEFFH 405 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 N++H + +++++ P V L D L +R + + P+ + ++ K Sbjct: 406 TFNTLHNANKQIVLSSDRPPKQL-VTLEDRLRNRFEWGLTTDVQPPELETRIAILRKKAV 464 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 Q+ ++ +I R+ R++ E + ++ A + L VLK+ Sbjct: 465 QEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDL 519 >gi|254818679|ref|ZP_05223680.1| chromosomal replication initiation protein [Mycobacterium intracellulare ATCC 13950] Length = 511 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 35/233 (15%), Positives = 86/233 (36%), Gaps = 28/233 (12%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRF 93 + D ++ ++ A + P+R + + G SG GK+ L + + F Sbjct: 175 RYTFDTFVIGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHA-AGNYAQRLF 233 Query: 94 SNI---AKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFHI 129 + S + D + L++DI ++ + + FH Sbjct: 234 PGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHT 293 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N++H + +++++ P L +R + + + P+ + ++ K Sbjct: 294 FNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQME 353 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ + + I +ER++ E + ++ A I ++LA VL++ Sbjct: 354 RLAVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDL 406 >gi|323141437|ref|ZP_08076327.1| chromosomal replication initiator protein DnaA [Phascolarctobacterium sp. YIT 12067] gi|322414093|gb|EFY04922.1| chromosomal replication initiator protein DnaA [Phascolarctobacterium sp. YIT 12067] Length = 459 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 39/260 (15%), Positives = 86/260 (33%), Gaps = 36/260 (13%) Query: 21 PKNKEEQLFFSFPR----------CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVV 67 P +E+Q F+ + ++ ++ A + + + P+ + Sbjct: 100 PAKREQQQLFNENTSVQQPDESNLNPKYVFETFVIGNSNRFAHAAAQAVANDPAHAYNPL 159 Query: 68 ILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTRK- 109 L G G GK+ L + S+K + ++I + Sbjct: 160 FLYGGVGLGKTHLMHAIGNRIKQNNPSMKVLYTSSEKFTNEIINSIQNKTTEAFRQKYRN 219 Query: 110 --PVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164 ++++DI L + + FH N++ D +++++ P L SR Sbjct: 220 IDCLIIDDIQFLKGKEQTQVEFFHTFNALKDADKQIIISSDRPPREIETLEDRLRSRFDQ 279 Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 I PD + ++ A I + ++ + + ++ E +K+ Sbjct: 280 GLTADIQTPDLETRMAILRTKAASDNIVLPTEVITLLATNIATNIREIEGAYNKIVAYTS 339 Query: 225 SRGMGITRSLAAEVLKETQQ 244 M IT A +VL + Sbjct: 340 LMHMPITVETAQKVLSDMGN 359 >gi|227873171|ref|ZP_03991462.1| DNA-directed DNA replication initiator protein [Oribacterium sinus F0268] gi|227841002|gb|EEJ51341.1| DNA-directed DNA replication initiator protein [Oribacterium sinus F0268] Length = 381 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 47/256 (18%), Positives = 92/256 (35%), Gaps = 34/256 (13%) Query: 20 QPKNKEEQLFFSFPRCLG-----ISRDDLLVHSAIEQAVRLIDSW---PSWPSRVVILVG 71 KN+EEQ + D +V S+ A + P + + G Sbjct: 23 PKKNQEEQPGLEEALKNANLNSRYTFDSFVVGSSNALAHAACVAAAEMPGEQYNPLYIYG 82 Query: 72 PSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDTRK----------------- 109 +G GK+ L I + +++ + +D+ + Sbjct: 83 GAGLGKTHLMQSVAHYILQQNKNAKIRYVTSETFINEFVDSIRNKNNISPAEFRRKYREL 142 Query: 110 -PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 +L++DI L + + FH N+++ +++ + P L SR + Sbjct: 143 DVLLIDDIQFLIGKEGTQEEFFHTFNALYDNRKQIIIASDKPPKKIDNIEERLLSRFEVG 202 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 V I LPD + ++ K ID ++ YI ++ ++ E + K+ + Sbjct: 203 LTVDIQLPDVETRMAILRKKEELEGYNIDNEVIKYIADNIKSNVRELEGALTKVVAKSRL 262 Query: 226 RGMGITRSLAAEVLKE 241 +T SLA E+LK+ Sbjct: 263 IKQPVTLSLAEELLKD 278 >gi|227508127|ref|ZP_03938176.1| DNA-directed DNA replication initiator protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227192356|gb|EEI72423.1| DNA-directed DNA replication initiator protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 469 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 37/232 (15%), Positives = 78/232 (33%), Gaps = 26/232 (11%) Query: 35 CLGISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK---- 87 + D+ ++ + A ++ P + G G GK+ L +K Sbjct: 135 NPNYTFDNFIIGKGNQMAHAAALIVSEEPGKLYNPLFFYGGVGLGKTHLMQAIGNKRLED 194 Query: 88 ---SRSTRFSNIAKSLDSILIDTRK-------------PVLLEDIDLLD---FNDTQLFH 128 + ++ A + D I ++++DI + FH Sbjct: 195 HPETNVKYVTSEAFTNDFINAIQTNRTEEFRREYRNVDLLMVDDIQFFAQKEGTQEEFFH 254 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N ++ D +++T+ P L SR V I+ PD + ++ Sbjct: 255 TFNDLYNNDKQIVLTSDRVPQEIPKLQERLVSRFAWGLPVDITPPDLETRIAILKSKAKL 314 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + I + +YI ++ ++ E + ++ + + IT L E LK Sbjct: 315 DNLTIPNETLSYIAGQINSNVRELEGALSRVQAYSKLKNEPITTDLVYEALK 366 >gi|227523339|ref|ZP_03953388.1| DNA-directed DNA replication initiator protein [Lactobacillus hilgardii ATCC 8290] gi|227089530|gb|EEI24842.1| DNA-directed DNA replication initiator protein [Lactobacillus hilgardii ATCC 8290] Length = 469 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 37/232 (15%), Positives = 78/232 (33%), Gaps = 26/232 (11%) Query: 35 CLGISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK---- 87 + D+ ++ + A ++ P + G G GK+ L +K Sbjct: 135 NPNYTFDNFIIGKGNQMAHAAALIVSEEPGKLYNPLFFYGGVGLGKTHLMQAIGNKRLED 194 Query: 88 ---SRSTRFSNIAKSLDSILIDTRK-------------PVLLEDIDLLD---FNDTQLFH 128 + ++ A + D I ++++DI + FH Sbjct: 195 HPETNVKYVTSEAFTNDFINAIQTNRTEEFRREYRNVDLLMVDDIQFFAQKEGTQEEFFH 254 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N ++ D +++T+ P L SR V I+ PD + ++ Sbjct: 255 TFNDLYNNDKQIVLTSDRVPQEIPKLQERLVSRFAWGLPVDITPPDLETRIAILKSKAKL 314 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + I + +YI ++ ++ E + ++ + + IT L E LK Sbjct: 315 DNLTIPNETLSYIAGQINSNVRELEGALSRVQAYSKLKNEPITTDLVYEALK 366 >gi|331700396|ref|YP_004397355.1| chromosomal replication initiator protein DnaA [Lactobacillus buchneri NRRL B-30929] gi|329127739|gb|AEB72292.1| Chromosomal replication initiator protein dnaA [Lactobacillus buchneri NRRL B-30929] Length = 449 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 36/232 (15%), Positives = 78/232 (33%), Gaps = 26/232 (11%) Query: 35 CLGISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK---- 87 + D+ ++ + A ++ P + G G GK+ L +K Sbjct: 115 NPNYTFDNFIIGKGNQMAHAAALIVSEEPGKLYNPLFFYGGVGLGKTHLMQAIGNKRLED 174 Query: 88 ---SRSTRFSNIAKSLDSILIDTRK-------------PVLLEDIDLLD---FNDTQLFH 128 + ++ A + D I ++++DI + FH Sbjct: 175 HPETNVKYVTSEAFTNDFINAIQTNRTEEFRREYRDVDILMVDDIQFFAQKEGTQEEFFH 234 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N ++ D +++T+ P L SR V I+ PD + ++ Sbjct: 235 TFNDLYNNDKQIVLTSDRVPQEIPKLQERLVSRFAWGLPVDITPPDLETRIAILKNKAKL 294 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + I +YI +++ ++ E + ++ + + IT L E L+ Sbjct: 295 DNLVIPNDTLSYIAGQIDSNVRELEGALSRVQAYSKLKDEPITTDLVYEALR 346 >gi|158311868|ref|YP_001504376.1| chromosomal replication initiator protein DnaA [Frankia sp. EAN1pec] gi|158107273|gb|ABW09470.1| chromosomal replication initiator protein DnaA [Frankia sp. EAN1pec] Length = 527 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 36/257 (14%), Positives = 90/257 (35%), Gaps = 28/257 (10%) Query: 13 PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP---SRVVIL 69 P + ++ + + ++ + + P + + Sbjct: 165 PGRMAPGLGRDPSPRPSEPARLNPRYLFETFVIGDSNRFPHAAAVAVAEAPAKAYNPLFI 224 Query: 70 VGPSGSGKSCLANI---------------------WSDKSRSTRFSNIAKSLDSILIDTR 108 G SG GK+ L + +++ ++ + + D Sbjct: 225 YGDSGLGKTHLLHAIGHYTVKLYPESKIKYVSMEEFTNDFIASIRDDRQLAFQRRYRD-I 283 Query: 109 KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 +L++DI L+ + + FH N +H + +++++ P L SR + Sbjct: 284 DVLLVDDIQFLENKERTQEEFFHTFNVLHDTEKQIVISSDRSPKQLSALEDRLRSRFEWG 343 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 + ++ PD + ++ K A ++ + + YI +ER++ E + ++ A Sbjct: 344 LITDVTPPDLETRIAILSKKAATERLPVPPDVLEYIATHIERNIRELEGALIRVAAFASL 403 Query: 226 RGMGITRSLAAEVLKET 242 + R+LA VL++ Sbjct: 404 NKSHVDRTLAEIVLRDL 420 >gi|288916710|ref|ZP_06411085.1| chromosomal replication initiator protein DnaA [Frankia sp. EUN1f] gi|288351965|gb|EFC86167.1| chromosomal replication initiator protein DnaA [Frankia sp. EUN1f] Length = 515 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 40/256 (15%), Positives = 89/256 (34%), Gaps = 26/256 (10%) Query: 13 PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP---SRVVIL 69 P + ++ + + ++ + + P + + Sbjct: 153 PGRVSPGLGRDPSPRPSEPARLNPRYLFETFVIGDSNRFPHAAAVAVAEAPAKAYNPLFI 212 Query: 70 VGPSGSGKSCLANIWSD-------KSRSTRFSNIAKSLDSILI-------------DTRK 109 G SG GK+ L + +SR S + D I Sbjct: 213 YGDSGLGKTHLLHAIGHYTVKLYPESRIKYVSMEEFTNDFIASIRDDRQLAFQRRYRDID 272 Query: 110 PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 +L++DI L+ + + FH N +H + +++++ P L SR + Sbjct: 273 VLLVDDIQFLENKERTQEEFFHTFNVLHDTEKQIVISSDRSPKQLAALEDRLRSRFEWGL 332 Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 + ++ PD + ++ K A ++ + + YI +ER++ E + ++ A Sbjct: 333 ITDVTPPDLETRIAILSKKAATERLPVPPDVLEYIATHIERNIRELEGALIRVAAFASLN 392 Query: 227 GMGITRSLAAEVLKET 242 + R+LA VL++ Sbjct: 393 KSHVDRTLAEIVLRDL 408 >gi|282880759|ref|ZP_06289455.1| chromosomal replication initiator protein DnaA [Prevotella timonensis CRIS 5C-B1] gi|281305293|gb|EFA97357.1| chromosomal replication initiator protein DnaA [Prevotella timonensis CRIS 5C-B1] Length = 470 Score = 102 bits (254), Expect = 7e-20, Method: Composition-based stats. Identities = 31/251 (12%), Positives = 82/251 (32%), Gaps = 31/251 (12%) Query: 24 KEEQLFFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSC 79 + +QL + + ++ + + + + + + + GPSG GK+ Sbjct: 124 QPQQLDPNL--NPHQTFNNYIEGDSNKLPRSVGLSIAEHPRKTQFNPMFVYGPSGCGKTH 181 Query: 80 L---------------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID- 117 L A ++ + + N T ++++DI Sbjct: 182 LINAIGMRTKQLYAQKRVLYVSARLFQVQYTNAVLQNSINDF-INFYQTIDLLIVDDIQE 240 Query: 118 --LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 FHI N + + +++ + PV L +R + ++ P+ Sbjct: 241 WMTATKTQDTFFHIFNHLFRNGKRIILASDRPPVDLKGMNERLLTRFSCGLIAELEKPNV 300 Query: 176 DFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235 ++ + I + + +I + S+ E +++ + ++ + LA Sbjct: 301 QLCIDILNSKIRKDGLQILEDVVQFIAETANGSVRDLEGVINSLLAYSVVYNSTVDMRLA 360 Query: 236 AEVLKETQQCD 246 V++ + D Sbjct: 361 QRVIQRAVKID 371 >gi|260429115|ref|ZP_05783092.1| chromosomal replication initiator protein DnaA [Citreicella sp. SE45] gi|260419738|gb|EEX12991.1| chromosomal replication initiator protein DnaA [Citreicella sp. SE45] Length = 556 Score = 102 bits (254), Expect = 7e-20, Method: Composition-based stats. Identities = 37/244 (15%), Positives = 83/244 (34%), Gaps = 31/244 (12%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSR 89 P + D +V E A + L G G GK+ L + + R Sbjct: 215 PLDARFTFDSFIVGKPNELAHAAAKRVAEGGQVTFNPLFLYGGVGLGKTHLMHAIAWDLR 274 Query: 90 STRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFND---TQL 126 + R L + L + ++++D+ + D + Sbjct: 275 NHRPDLNVLYLSAEQFMYRFVQALRERRMMDFKELFRSVDVLMVDDVQFIAGKDSTQEEF 334 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH N++ + ++++A P + SRL++ VV + D + ++ Sbjct: 335 FHTFNALVDQNKQIIISADRAPDEIKDLENRIRSRLQSGLVVDLHPTDYELRLGILQSKV 394 Query: 187 ADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + + + +D + ++ R+ ++ E + ++ A G IT L + L + Sbjct: 395 QNYRLQYPSLQLDDGILEFLAHRISTNVRVLEGALTRLFAFASLVGQPITMELTQDCLAD 454 Query: 242 TQQC 245 + Sbjct: 455 VLRA 458 >gi|227511152|ref|ZP_03941201.1| DNA-directed DNA replication initiator protein [Lactobacillus buchneri ATCC 11577] gi|227085634|gb|EEI20946.1| DNA-directed DNA replication initiator protein [Lactobacillus buchneri ATCC 11577] Length = 469 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 37/232 (15%), Positives = 78/232 (33%), Gaps = 26/232 (11%) Query: 35 CLGISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK---- 87 + D+ ++ + A ++ P + G G GK+ L +K Sbjct: 135 NPNYTFDNFIIGKGNQMAHAAALIVSEEPGKLYNPLFFYGGVGLGKTHLMQAIGNKRLED 194 Query: 88 ---SRSTRFSNIAKSLDSILIDTRK-------------PVLLEDIDLLD---FNDTQLFH 128 + ++ A + D I ++++DI + FH Sbjct: 195 HPETNVKYVTSEAFTNDFINAIQTNRTEEFRREYRNVDLLMVDDIQFFAQKEGTQEEFFH 254 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N ++ D +++T+ P L SR V I+ PD + ++ Sbjct: 255 TFNDLYNNDKQIVLTSDRVPQEIPKLQERLVSRFAWGLPVDITPPDLETRIAILKSKAKL 314 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + I + +YI ++ ++ E + ++ + + IT L E LK Sbjct: 315 DNLTIPNETLSYIAGQINSNVRELEGALSRVQAYSKLKSEPITTDLVYEALK 366 >gi|302552694|ref|ZP_07305036.1| chromosomal replication initiator protein DnaA [Streptomyces viridochromogenes DSM 40736] gi|302470312|gb|EFL33405.1| chromosomal replication initiator protein DnaA [Streptomyces viridochromogenes DSM 40736] Length = 663 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 88/235 (37%), Gaps = 28/235 (11%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90 D ++ ++ A + P+ + + G SG GK+ L + +RS Sbjct: 325 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSL 384 Query: 91 -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128 R+ + + + + R +L++DI L + + FH Sbjct: 385 YPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFH 444 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 N++H + +++++ P V L D L +R + + + P+ + ++ K Sbjct: 445 TFNTLHNANKQIVLSSDRPPKQL-VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 503 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 Q+ ++ +I R+ R++ E + ++ A + L VLK+ Sbjct: 504 QEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDL 558 >gi|256786613|ref|ZP_05525044.1| chromosomal replication initiation protein [Streptomyces lividans TK24] Length = 641 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 89/236 (37%), Gaps = 28/236 (11%) Query: 34 RCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS 90 R D ++ ++ A + P+ + + G SG GK+ L + +RS Sbjct: 302 RNPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARS 361 Query: 91 ------TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLF 127 R+ + + + + R +L++DI L + + F Sbjct: 362 LYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFF 421 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMF 186 H N++H + +++++ P V L D L +R + + + P+ + ++ K Sbjct: 422 HTFNTLHNANKQIVLSSDRPPKQL-VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKA 480 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 Q+ ++ +I R+ R++ E + ++ A + L VLK+ Sbjct: 481 VQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDL 536 >gi|291280548|ref|YP_003497383.1| chromosome replication initiator protein DnaA [Deferribacter desulfuricans SSM1] gi|290755250|dbj|BAI81627.1| chromosome replication initiator protein DnaA [Deferribacter desulfuricans SSM1] Length = 443 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 34/231 (14%), Positives = 80/231 (34%), Gaps = 27/231 (11%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLAN------------ 82 + D+ +V ++ A + + + G G GK+ L + Sbjct: 111 YTFDNFVVGNSNNFAHAACMAVADGYFHTYNPLFIYGGVGLGKTHLMHAVGNRLLEKFPK 170 Query: 83 -----IWSDKSRSTRFSNIAKSLDSILIDTRK---PVLLEDIDLLDFND---TQLFHIIN 131 I S+ + S + + + +L +D+ L + F+ N Sbjct: 171 LRVLYISSENFTNEMISALKSKKMDEFREKYRKVDVLLFDDVQFLAGKQRSTEEFFYTFN 230 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 S++ +++T+ P L +R + I P + +++K I Sbjct: 231 SLYDSQKQIILTSDKTPAEIPEMEERLTTRFAWGLIADIQPPSVEEKTAILMKRAELMNI 290 Query: 192 FIDKKLAAYIVQRM-ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 +++K+A +I + + ++ + ++ + G IT LA + L Sbjct: 291 DLNEKVALFIAENLKSDNVRELIGALIRLSAYSSFNGEPITIELAKKTLDR 341 >gi|145294043|ref|YP_001136864.1| chromosomal replication initiation protein [Corynebacterium glutamicum R] gi|166201881|sp|A4Q9R9|DNAA_CORGB RecName: Full=Chromosomal replication initiator protein DnaA gi|140843963|dbj|BAF52962.1| hypothetical protein [Corynebacterium glutamicum R] Length = 524 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 37/251 (14%), Positives = 93/251 (37%), Gaps = 30/251 (11%) Query: 17 KNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPS 73 + N ++ + + + ++ A + P++ + + G S Sbjct: 171 RETPAHNPNREVSLN----PKYTFESFVIGPFNRFANAAAVAVAESPAKAFNPLFISGGS 226 Query: 74 GSGKSCLANI----WSDKSRSTRFSNIA------KSLDSILIDTRKP----------VLL 113 G GK+ L + + R ++ ++S+ D ++ +++ Sbjct: 227 GLGKTHLLHAVGNYAQELQPGLRIKYVSSEEFTNDYINSVRDDRQETFKRRYRNLDILMV 286 Query: 114 EDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 +DI L + + FH N++HQ D +++++ P L +R + + I Sbjct: 287 DDIQFLAGKEGTQEEFFHTFNALHQADKQIILSSDRPPKQLTTLEDRLRTRFEGGLITDI 346 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 PD + +++K +D+++ I R E S+ E + ++ + I Sbjct: 347 QPPDLETRIAILMKKAQTDGTHVDREVLELIASRFESSIRELEGALIRVSAYSSLINQPI 406 Query: 231 TRSLAAEVLKE 241 + +A L++ Sbjct: 407 DKEMAIVALRD 417 >gi|19551251|ref|NP_599253.1| chromosomal replication initiation protein [Corynebacterium glutamicum ATCC 13032] gi|62388893|ref|YP_224295.1| chromosomal replication initiation protein [Corynebacterium glutamicum ATCC 13032] gi|38257663|sp|Q8NUD8|DNAA_CORGL RecName: Full=Chromosomal replication initiator protein DnaA gi|21322765|dbj|BAB97394.1| ATPase involved in DNA replication initiation [Corynebacterium glutamicum ATCC 13032] gi|41324226|emb|CAF18566.1| CHROMOSOMAL REPLICATION INITIATOR PROTEIN [Corynebacterium glutamicum ATCC 13032] Length = 524 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 37/251 (14%), Positives = 93/251 (37%), Gaps = 30/251 (11%) Query: 17 KNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPS 73 + N ++ + + + ++ A + P++ + + G S Sbjct: 171 RETPAHNPNREVSLN----PKYTFESFVIGPFNRFANAAAVAVAESPAKAFNPLFISGGS 226 Query: 74 GSGKSCLANI----WSDKSRSTRFSNIA------KSLDSILIDTRKP----------VLL 113 G GK+ L + + R ++ ++S+ D ++ +++ Sbjct: 227 GLGKTHLLHAVGNYAQELQPGLRIKYVSSEEFTNDYINSVRDDRQETFKRRYRNLDILMV 286 Query: 114 EDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 +DI L + + FH N++HQ D +++++ P L +R + + I Sbjct: 287 DDIQFLAGKEGTQEEFFHTFNALHQADKQIILSSDRPPKQLTTLEDRLRTRFEGGLITDI 346 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 PD + +++K +D+++ I R E S+ E + ++ + I Sbjct: 347 QPPDLETRIAILMKKAQTDGTHVDREVLELIASRFESSIRELEGALIRVSAYSSLINQPI 406 Query: 231 TRSLAAEVLKE 241 + +A L++ Sbjct: 407 DKEMAIVALRD 417 >gi|320547711|ref|ZP_08041996.1| DNA-directed DNA replication initiator protein [Streptococcus equinus ATCC 9812] gi|320447786|gb|EFW88544.1| DNA-directed DNA replication initiator protein [Streptococcus equinus ATCC 9812] Length = 451 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 36/267 (13%), Positives = 86/267 (32%), Gaps = 36/267 (13%) Query: 14 DKQKNDQPKNKEEQLF-------FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS-- 64 KQ +P ++ Q + D+ + A + P Sbjct: 85 AKQAVAKPTSQVLQAPKKSNLPQVDSDLNTKYTFDNFVQGDENRWAFSASYAVADAPGTT 144 Query: 65 -RVVILVGPSGSGKSCLANIWSDKS------------------RSTRFSNIAKSLDSILI 105 + + G G GK+ L N + +++ + Sbjct: 145 YNPLFIWGGPGLGKTHLLNAIGNAVLQNNPKARVKYITAENFINEFVIHIRLDTMEELKE 204 Query: 106 DTRKP--VLLEDIDLLD-----FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158 R +L++DI L + F+ N+++ + +++T+ P L Sbjct: 205 KFRNLDVLLIDDIQSLAKKTLSGTQEEFFNTFNALYDNNKQIVLTSDRTPDHLDNLEQRL 264 Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218 +R K + I+ PD + ++ + + Y+ + + ++ E + Sbjct: 265 VTRFKWGLTINITPPDFETRVAILTNKTQEYDFVFPQDTIEYLAGQFDSNVRDLEGALKD 324 Query: 219 MD-NLALSRGMGITRSLAAEVLKETQQ 244 + ++ + IT +AAE ++ +Q Sbjct: 325 ISLVASIKKAKTITVDIAAEAIRARKQ 351 >gi|54021965|ref|YP_116207.1| putative replication initiator protein [Nocardia farcinica IFM 10152] gi|61212513|sp|Q5Z3Z8|DNAA_NOCFA RecName: Full=Chromosomal replication initiator protein DnaA gi|54013473|dbj|BAD54843.1| putative replication initiator protein [Nocardia farcinica IFM 10152] Length = 662 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 40/262 (15%), Positives = 96/262 (36%), Gaps = 34/262 (12%) Query: 9 SFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-- 66 ++F +++ P N L + + ++ ++ A + P+R Sbjct: 305 TYFAKNQESTPAPANSSASL------NAKYTFETFVIGASNRFAHAAAVAIAEAPARAYN 358 Query: 67 -VILVGPSGSGKSCLANIWSDKSRSTRFSNI---AKSLDSILIDTRKPV----------- 111 + + G SG GK+ L + + F + S + D + Sbjct: 359 PLFVWGASGLGKTHLLHA-AGHYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRR 417 Query: 112 -------LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161 L++DI ++ + + FH N++H + +++++ P L +R Sbjct: 418 YRETDILLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQIVVSSDRPPKQLATLEERLRTR 477 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 + + + P+ + ++ K ++ + + I R+ER++ E + ++ Sbjct: 478 FEWGLITDVQPPELETRIAILRKKARMDRLDVPHDVLELIASRVERNIRELEGALIRVTA 537 Query: 222 LALSRGMGITRSLAAEVLKETQ 243 A G + SLA VL++ Sbjct: 538 FASLNGQPLDLSLAEVVLRDLM 559 >gi|81251084|gb|ABB69884.1| DNA replication initiator protein [Nitrosospira sp. NIJS18] Length = 476 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 38/255 (14%), Positives = 86/255 (33%), Gaps = 33/255 (12%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILV 70 + K + KN + + + A + A P + Sbjct: 128 NNIKEKREKNPSR-------LNPSFTFNTFVTGKANQLARAGAIQVAECPGVAYNPFFIY 180 Query: 71 GPSGSGKSCLANIWSDK-------------SRSTRFSNIAKSLDSILID-------TRKP 110 G G GK+ L + S++ ++ D + Sbjct: 181 GGVGLGKTHLIQAIGNLVLEHNPGAKVRYIHSEQYVSDVVRAYQHKAFDDFKRYYHSLDL 240 Query: 111 VLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 +L++DI + F+ N++ + +++T ++P L SR Sbjct: 241 LLIDDIQFFGGKNRTQEEFFYAFNALIEAHKQVIITCDSYPKEISGMEERLISRFGWGLT 300 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 V + P+ + +++K + I +D+ +A +I + + ++ E + ++ + G Sbjct: 301 VAVEPPELEMRVAILLKKASMEAIMLDESVAFFIAKHIRSNVRELEGALKRVVAYSRFTG 360 Query: 228 MGITRSLAAEVLKET 242 +T LA E LK+ Sbjct: 361 HALTLDLAREALKDL 375 >gi|81251080|gb|ABB69881.1| DNA replication initiator protein [Nitrosospira sp. NIJS16] Length = 476 Score = 101 bits (253), Expect = 8e-20, Method: Composition-based stats. Identities = 38/255 (14%), Positives = 86/255 (33%), Gaps = 33/255 (12%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILV 70 + K + KN + + + A + A P + Sbjct: 128 NNIKEKREKNPSR-------LNPSFTFNTFVTGKANQLARAGAIQVAECPGVAYNPFFIY 180 Query: 71 GPSGSGKSCLANIWSDK-------------SRSTRFSNIAKSLDSILID-------TRKP 110 G G GK+ L + S++ ++ D + Sbjct: 181 GGVGLGKTHLIQAIGNLVLEHNPGAKVRYIHSEQYVSDVVRAYQHKAFDDFKRYYHSLDL 240 Query: 111 VLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 +L++DI + F+ N++ + +++T ++P L SR Sbjct: 241 LLIDDIQFFGGKNRTQEEFFYAFNALIEAHKQVIITCDSYPKEISGMEERLISRFGWGLT 300 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 V + P+ + +++K + I +D+ +A +I + + ++ E + ++ + G Sbjct: 301 VAVEPPELEMRVAILLKKASMEAIMLDESVAFFIAKHIRSNVRELEGALKRVVAYSRFTG 360 Query: 228 MGITRSLAAEVLKET 242 +T LA E LK+ Sbjct: 361 HALTLDLAREALKDL 375 >gi|295837757|ref|ZP_06824690.1| DNA-directed DNA replication initiator protein [Streptomyces sp. SPB74] gi|295826662|gb|EFG64970.1| DNA-directed DNA replication initiator protein [Streptomyces sp. SPB74] Length = 632 Score = 101 bits (253), Expect = 8e-20, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 88/235 (37%), Gaps = 28/235 (11%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90 D ++ ++ A + P+ + + G SG GK+ L + +RS Sbjct: 301 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFVYGESGLGKTHLLHAIGHYARSL 360 Query: 91 -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128 R+ + + + + R +L++DI L + + FH Sbjct: 361 YPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFH 420 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 N++H + +++++ P V L D L +R + + + P+ + ++ K Sbjct: 421 TFNTLHNANKQIVLSSDRPPKQL-VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 479 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 Q+ ++ +I R+ R++ E + ++ A + L VLK+ Sbjct: 480 QEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDL 534 >gi|226952830|ref|ZP_03823294.1| DNA replication initiator protein [Acinetobacter sp. ATCC 27244] gi|294648702|ref|ZP_06726162.1| DNA-directed DNA replication initiator protein [Acinetobacter haemolyticus ATCC 19194] gi|226836451|gb|EEH68834.1| DNA replication initiator protein [Acinetobacter sp. ATCC 27244] gi|292825377|gb|EFF84120.1| DNA-directed DNA replication initiator protein [Acinetobacter haemolyticus ATCC 19194] Length = 466 Score = 101 bits (253), Expect = 8e-20, Method: Composition-based stats. Identities = 46/266 (17%), Positives = 99/266 (37%), Gaps = 35/266 (13%) Query: 4 MKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDS--WPS 61 +K++ P + N PK + QL + + + + A Sbjct: 108 IKKEADLVQPSQNANKIPKKR--QL------NPLFTFSLFVEGRSNQMAAETCRKVLTQL 159 Query: 62 WPSRV--VILVGPSGSGKSCLANI-----WSDKSRSTRFSNIAKSLDSILIDTR------ 108 S+ + L GP+G GK+ L K + ++S + + Sbjct: 160 GASQHNPLFLYGPTGLGKTHLMQAVGNALLQAKPNARVMYMTSESFVQDFVSSLQKGKVE 219 Query: 109 ---------KPVLLEDIDLLDFNDTQL---FHIINSIHQYDSSLLMTARTFPVSWGVCLP 156 +L++DI LL + L F+ N++ +++T+ +P P Sbjct: 220 EFKKNCRSLDLLLVDDIHLLAGKEASLVEFFYTFNALLDESKQIILTSDRYPKELTELDP 279 Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216 L SR V + PD + ++++K + + + + A +I Q++ ++ E + Sbjct: 280 RLVSRFSWGLSVGVEPPDIETRIEILLKKAENSGVDLPRNCALFIAQQVVANVRELEGAL 339 Query: 217 DKMDNLALSRGMGITRSLAAEVLKET 242 +K+ ++ +G I + E LK+ Sbjct: 340 NKVVAISRFKGTAIDLDVVRESLKDV 365 >gi|111219506|ref|YP_710300.1| chromosomal replication initiator protein [Frankia alni ACN14a] gi|111147038|emb|CAJ58685.1| Chromosomal replication initiator protein [Frankia alni ACN14a] Length = 534 Score = 101 bits (253), Expect = 8e-20, Method: Composition-based stats. Identities = 44/267 (16%), Positives = 92/267 (34%), Gaps = 36/267 (13%) Query: 12 VPDKQKNDQPKNKEEQL---FFSFPRCLGISR-------DDLLVHSAIEQAVRLIDSWPS 61 PD ++ P L +R + ++ + + Sbjct: 161 FPDSAESTPPMRVGAGLGRDAAPLETEPAQARLNPRYVFETFVIGDSNRFPHAAAVAVAE 220 Query: 62 WP---SRVVILVGPSGSGKSCLANIWSD-------KSRSTRFSNIAKSLDSILI------ 105 P + + G SG GK+ L + +R S+ + D I Sbjct: 221 APAKAYNPLFIYGDSGLGKTHLLHAIGHYALKLYPNTRVKYVSSEEFTNDFINSIRDDRQ 280 Query: 106 -------DTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 +L++DI L+ + + FH N +H + +++++ P Sbjct: 281 QAFQRRYRDIDVLLVDDIQFLENKERTQEEFFHTFNVLHDGEKQIVISSDRSPKQLSALE 340 Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215 L SR + + I+ PD + ++ K A ++ + + YI +ER++ E Sbjct: 341 DRLRSRFEWGLMTDITPPDLETRIAILSKKAATERLPVPPDVLEYIATHIERNIRELEGA 400 Query: 216 VDKMDNLALSRGMGITRSLAAEVLKET 242 + ++ A + R+LA VL++ Sbjct: 401 LIRVAAFASLNKSHVDRTLAEIVLRDL 427 >gi|297537198|ref|YP_003672967.1| chromosomal replication initiator protein DnaA [Methylotenera sp. 301] gi|297256545|gb|ADI28390.1| chromosomal replication initiator protein DnaA [Methylotenera sp. 301] Length = 471 Score = 101 bits (253), Expect = 8e-20, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 85/234 (36%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87 + D+ + A + A P + + G G GK+ L ++ Sbjct: 137 NSAFNFDNYVTGRANQLARAAAIQVAENPGTAYNPLFIYGGVGLGKTHLLQAIGNELKKH 196 Query: 88 ---------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDF---NDTQLFH 128 +++ K+ + D + +L++DI + F+ Sbjct: 197 NPDAKIRYLHAERYVTDVVKAYEHKAFDEFKRQYHSLDLLLIDDIQFFAKKTRTQEEFFY 256 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 NS+ + +++T T+P L +R V + P+ + +++K Sbjct: 257 AFNSLIEAKKQIVITCDTYPKEIIDVDERLRTRFSWGLTVAVEPPELEMRVAILLKKAEA 316 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + +A +I +++ S+ E ++++ +A G I LA + L++ Sbjct: 317 VNLNLPEDVAFFIAKQIRSSVRELEGALNRIIAMAKFTGHSIDVHLAKDALRDL 370 >gi|34539881|ref|NP_904360.1| chromosomal replication initiation protein [Porphyromonas gingivalis W83] gi|188993865|ref|YP_001928117.1| chromosomal replication initiation protein [Porphyromonas gingivalis ATCC 33277] gi|61212688|sp|Q7MXZ1|DNAA_PORGI RecName: Full=Chromosomal replication initiator protein DnaA gi|226735831|sp|B2RGM5|DNAA_PORG3 RecName: Full=Chromosomal replication initiator protein DnaA gi|34396192|gb|AAQ65259.1| chromosomal replication initiator protein DnaA [Porphyromonas gingivalis W83] gi|188593545|dbj|BAG32520.1| chromosomal replication initiator protein DnaA [Porphyromonas gingivalis ATCC 33277] Length = 473 Score = 101 bits (253), Expect = 8e-20, Method: Composition-based stats. Identities = 35/262 (13%), Positives = 95/262 (36%), Gaps = 33/262 (12%) Query: 12 VPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV----V 67 +P+ + + ++ + QL ++ + A + ++ + P Sbjct: 121 MPNAATHSEAQDFDTQL------NSRLNFRNFYQSECNYVARSVAEAIAASPGNTPMNPF 174 Query: 68 ILVGPSGSGKSCLANIWSDKSRSTR------------------FSNIAKSLDSILI--DT 107 + G SG GK+ L + + R + +++ + Sbjct: 175 FIYGASGVGKTHLCHALGLRVREMHPRLKVLYVSSHLFEMQFTTAARMGTINDFIAFYQQ 234 Query: 108 RKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164 ++++DI L F + N ++ +++T+ PV L +R+ Sbjct: 235 VDVLIIDDIQWLIGKKKTQLAFFQVFNHLYMLGKQIVLTSDKPPVDLNGMEERLVTRMAG 294 Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 AT VKI PD +++ + + +D+ + +I + + ++ E + + ++ Sbjct: 295 ATCVKIERPDLKLRREILQQRTLQSGVRLDESVLNFIAENVCDNVRELEGTLVSLITNSV 354 Query: 225 SRGMGITRSLAAEVLKETQQCD 246 G I + A ++++ + + Sbjct: 355 VVGKEIDLTFAKRIVRQAVRLE 376 >gi|320009750|gb|ADW04600.1| chromosomal replication initiator protein DnaA [Streptomyces flavogriseus ATCC 33331] Length = 580 Score = 101 bits (253), Expect = 8e-20, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 87/235 (37%), Gaps = 28/235 (11%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90 D ++ ++ A + P+ + + G SG GK+ L + +RS Sbjct: 242 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSL 301 Query: 91 -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128 R+ + + + + R +L++DI L + + FH Sbjct: 302 YPGTRVRYVSSEEFTNEFINSIRDGKGDTFRKRYRDVDILLVDDIQFLASKESTQEEFFH 361 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 N++H + +++++ P V L D L +R + + P+ + ++ K Sbjct: 362 TFNTLHNANKQIVLSSDRPPKQL-VTLEDRLRNRFEWGLTTDVQPPELETRIAILRKKAV 420 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 Q+ ++ +I R+ R++ E + ++ A + L VLK+ Sbjct: 421 QEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDL 475 >gi|254509739|ref|ZP_05121806.1| chromosomal replication initiator protein DnaA [Rhodobacteraceae bacterium KLH11] gi|221533450|gb|EEE36438.1| chromosomal replication initiator protein DnaA [Rhodobacteraceae bacterium KLH11] Length = 460 Score = 101 bits (253), Expect = 8e-20, Method: Composition-based stats. Identities = 40/247 (16%), Positives = 87/247 (35%), Gaps = 35/247 (14%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANI--WSDK 87 P + D +V E A ++L G G GK+ L + W K Sbjct: 119 PLDARFTFDSFVVGKPNELAHAAARRVSEGGPVTFNPLVLYGGVGLGKTHLMHAIAWELK 178 Query: 88 SRSTRFSNIAKSLDSI------------------LIDTRKPVLLEDIDLLDFND---TQL 126 ++S + + S + L + ++++D+ + D + Sbjct: 179 TKSPELNVLYLSAEQFMYRFVQALRERRMMDFKHLFRSVDVLMVDDVQFIAGKDSTQEEF 238 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH N++ + ++++A P + SRL+ VV + D + ++ Sbjct: 239 FHTFNALVDQNKQIIISADRAPGEIKDLEDRVKSRLQCGLVVDLHPTDYELRLGILQNKV 298 Query: 187 ADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA----AE 237 + I + ++ QR+ ++ E + ++ A G I L A+ Sbjct: 299 QQYSSTYPDLTISDGVLEFLAQRISTNVRVLEGALTRLFAFASLVGREIDMDLTQDCLAD 358 Query: 238 VLKETQQ 244 VL+ +++ Sbjct: 359 VLRMSER 365 >gi|226362895|ref|YP_002780675.1| chromosomal replication initiation protein [Rhodococcus opacus B4] gi|254777911|sp|C1B7S7|DNAA_RHOOB RecName: Full=Chromosomal replication initiator protein DnaA gi|226241382|dbj|BAH51730.1| chromosomal replication initiator protein DnaA [Rhodococcus opacus B4] Length = 528 Score = 101 bits (253), Expect = 8e-20, Method: Composition-based stats. Identities = 36/236 (15%), Positives = 86/236 (36%), Gaps = 28/236 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91 + D ++ S+ A + P+R + + G SG GK+ L + + Sbjct: 190 NAKYTFDTFVIGSSNRFAHAAAVAIAEAPARAYNPLFIWGASGLGKTHLLHA-AGHYAQR 248 Query: 92 RFSNI---AKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLF 127 F + S + D + L++DI ++ + + F Sbjct: 249 LFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRRYRETDVLLVDDIQFIEGKEGIQEEFF 308 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++H + +++++ P L +R + + + P+ + ++ K Sbjct: 309 HTFNTLHNANKQIVVSSDRPPKQLATLEERLRTRFEWGLITDVQPPELETRIAILSKKAR 368 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 ++ + + I R+ER++ E + ++ A + +LA VL++ Sbjct: 369 MDRLEVPDDVLELIASRIERNIRELEGALIRVTAFASLNRQPLDLTLAEVVLRDLM 424 >gi|254488435|ref|ZP_05101640.1| chromosomal replication initiator protein DnaA [Roseobacter sp. GAI101] gi|214045304|gb|EEB85942.1| chromosomal replication initiator protein DnaA [Roseobacter sp. GAI101] Length = 454 Score = 101 bits (253), Expect = 8e-20, Method: Composition-based stats. Identities = 35/244 (14%), Positives = 82/244 (33%), Gaps = 31/244 (12%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDK-- 87 P S D+ +V E A + L G G GK+ L + + + Sbjct: 113 PLDARFSFDNFVVGKPNELAHAAARRVAEGGPVTFNPLFLYGGVGLGKTHLMHAIAQELQ 172 Query: 88 -----------SRSTRFSNIAKSLDS-------ILIDTRKPVLLEDIDLLDFND---TQL 126 S ++L + + ++++D+ + D + Sbjct: 173 IRKPELNVLYLSAEQFMYRFVQALRDRKMMDFKEIFRSVDVLMVDDVQFIAGKDSTQEEF 232 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH N++ + ++++A P + SRL+ VV + D + ++ Sbjct: 233 FHTFNALVDQNKQIIISADRAPGEIKDLEDRVKSRLQCGLVVDLHPTDYELRLGILQSKV 292 Query: 187 ADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 +Q + ++ + ++ R+ ++ E + ++ A G I L + L + Sbjct: 293 ETQQKNYPGLEVEAGVLEFLAHRITTNVRVLEGALTRLFAFASLVGREINMDLTQDCLAD 352 Query: 242 TQQC 245 + Sbjct: 353 VLRA 356 >gi|163738134|ref|ZP_02145550.1| chromosomal replication initiation protein [Phaeobacter gallaeciensis BS107] gi|161388750|gb|EDQ13103.1| chromosomal replication initiation protein [Phaeobacter gallaeciensis BS107] Length = 475 Score = 101 bits (253), Expect = 8e-20, Method: Composition-based stats. Identities = 38/244 (15%), Positives = 84/244 (34%), Gaps = 31/244 (12%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANI--WSDK 87 P + D +V E A ++L G G GK+ L + W Sbjct: 134 PLDPRFTFDSFVVGKPNELAHAAARRVAEGGPVTFNPLVLYGGVGLGKTHLMHAIAWELT 193 Query: 88 SRSTRFSNIAKSLDSI------------------LIDTRKPVLLEDIDLLDFND---TQL 126 +R+ + + S + L + ++++D+ + D + Sbjct: 194 ARNPELNVLYLSAEQFMYRFVQALRERKMMDFKHLFRSVDVLMVDDVQFIAGKDSTQEEF 253 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV-KM 185 FH N++ + ++++A P + SRL+ VV + D + ++ K+ Sbjct: 254 FHTFNALVDQNKQIIISADRAPGEIKDLEDRVRSRLQCGLVVDLHPTDYELRLGILQSKV 313 Query: 186 FADRQ----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 Q + I + ++ R+ ++ E + ++ A G I L + L + Sbjct: 314 AQQMQTYPDLRIADGVLEFLAHRISTNVRVLEGALTRLFAFASLVGREIDMELTQDCLAD 373 Query: 242 TQQC 245 + Sbjct: 374 VLRA 377 >gi|255534685|ref|YP_003095056.1| Chromosomal replication initiator protein dnaA [Flavobacteriaceae bacterium 3519-10] gi|255340881|gb|ACU06994.1| Chromosomal replication initiator protein dnaA [Flavobacteriaceae bacterium 3519-10] Length = 488 Score = 101 bits (253), Expect = 9e-20, Method: Composition-based stats. Identities = 43/287 (14%), Positives = 94/287 (32%), Gaps = 56/287 (19%) Query: 1 MNLMKEDYSFFVPDKQKNDQPKNKE-----------EQLFFSFPRCLGISRDDLLVHSAI 49 MN+ + S P Q+ P +++ S D+ + + Sbjct: 110 MNM--KGKSIATPKMQETLPPSFSSNLINPFVVPGMKKINIDSNLKADFSFDNYVEGESN 167 Query: 50 ----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI---------------------- 83 A + + + L G G GK+ L + Sbjct: 168 KFASTVARSIAKRPGATAFNPLFLYGGYGVGKTHLGHAVGLEVKNSYPDKVVLYLSSEKF 227 Query: 84 ------WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDTQLFHIINSIH 134 + + T F+N + +D ++++DI L FHI + +H Sbjct: 228 IQQFVSAAKAHKQTEFANFYQMVDV--------LIIDDIQFLSGKKSTQDSFFHIFDYLH 279 Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194 Q +++T+ PV + SR K +I PD D K+IV + I + Sbjct: 280 QNGKQIILTSDKAPVDILDIQDRIVSRFKWGLSAEIKSPDFDTRRKIIVDKLSRDGIVLT 339 Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + + ++ ++ ++ +++ + + ++ L E + + Sbjct: 340 EDMLDFLASEVKTNVRELIGVINSVIAYSTVYKSELSLELLKETINK 386 >gi|296137751|ref|YP_003644994.1| chromosomal replication initiator protein DnaA [Tsukamurella paurometabola DSM 20162] gi|296025885|gb|ADG76655.1| chromosomal replication initiator protein DnaA [Tsukamurella paurometabola DSM 20162] Length = 490 Score = 101 bits (253), Expect = 9e-20, Method: Composition-based stats. Identities = 36/235 (15%), Positives = 86/235 (36%), Gaps = 28/235 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91 + + ++ ++ A + P+R + + G SG GK+ L + + Sbjct: 153 NQKYTFETFVIGASNRFAHAAAFAVAEAPARAYNPLFIWGESGLGKTHLLHA-AGHYAQR 211 Query: 92 RFSNI---AKSLDSILIDTRKP------------------VLLEDIDLLDFN---DTQLF 127 F + S + D +L++DI L+ + F Sbjct: 212 LFPGMRVKYVSTEEFTNDFINSLKDDRQVQFKQRYRDVDILLVDDIQFLEGKLGIQEEFF 271 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++H + +++++ P L +R + + + P+ + +++K Sbjct: 272 HTFNTLHNANKQIVVSSDRPPKQLATLEDRLRTRFEWGLITDVQPPELEIRMAILLKKAQ 331 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +I + + I R++R++ E + ++ A +T LA VL++ Sbjct: 332 MERIHVPHDVLELIATRIDRNIRELEGALIRVTAFASLTQTDVTYELAEMVLRDL 386 >gi|313892203|ref|ZP_07825796.1| chromosomal replication initiator protein DnaA [Dialister microaerophilus UPII 345-E] gi|313119341|gb|EFR42540.1| chromosomal replication initiator protein DnaA [Dialister microaerophilus UPII 345-E] Length = 494 Score = 101 bits (253), Expect = 9e-20, Method: Composition-based stats. Identities = 44/277 (15%), Positives = 102/277 (36%), Gaps = 36/277 (12%) Query: 1 MNLMKEDYSFFVPDKQKNDQPKNKEEQLFF--SFPRCLGISRDDLLVHSAIEQAVR-LID 57 +N+ K +P Q + +E+ + P + + + + E A + + Sbjct: 116 INIPKNSQDIVLPSIQNYSKQTKVKEKPVYKSPNPINTEHTFETFVHGNCNEMAFQSALS 175 Query: 58 SWPSWPS--------RVVILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDT 107 + + + GPSG GK+ L + + + + S I S ++ + Sbjct: 176 VAQMAVNMEEMDKKMNPLFIYGPSGLGKTHLLHAICNYIRENAPHLSYIFVSSETFTNEL 235 Query: 108 RKPV------------------LLEDID---LLDFNDTQLFHIINSIHQYDSSLLMTART 146 + L++D+ + + ++F+ N++ +++T+ Sbjct: 236 IASIKSNSMPKFREKYRNPDYLLIDDVQFFGSKNSSKMEIFNTFNTLFDNKKHIILTSDR 295 Query: 147 FPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 P L D + +R + +V IS PD + ++ K I I ++ YI + + Sbjct: 296 TPSDIE-ELEDRIQTRFSSGLIVPISPPDYEICSIILEKRAEKEGINIPSEVINYIAEHI 354 Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ + +K+ A + +T A E LK+ Sbjct: 355 NTNVRELDGAFNKLVTYAKVQKKEMTLEFAKETLKDQ 391 >gi|289422504|ref|ZP_06424347.1| chromosomal replication initiator protein DnaA [Peptostreptococcus anaerobius 653-L] gi|289157076|gb|EFD05698.1| chromosomal replication initiator protein DnaA [Peptostreptococcus anaerobius 653-L] Length = 460 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 36/236 (15%), Positives = 79/236 (33%), Gaps = 28/236 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIWSDK-- 87 + D + A+ S + + + L G G GK+ L + Sbjct: 123 NPKYTFDTFVSGPNNNIALAASLSMAGLNNNLKGKNPLYLYGGVGLGKTHLMQAIGHEII 182 Query: 88 ----SRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQL 126 S+ + + +++ + ++++D+ +L Sbjct: 183 RKDPSKKVLYVTSETFTNDLIMSLKNNTPETFRQKYRSVDVLMVDDVQFFSGKNSTQEEL 242 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH N + + ++ T+ +P L SR + V I P+ + ++ K Sbjct: 243 FHTFNVLQGQNKKIIFTSDKYPKDISGLEDRLTSRFGSGAVFDIQPPEFETRVAILQKKA 302 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 D + +D + YI + ++ ++ E ++ + A G I A E LK Sbjct: 303 QDENMSVDMDIIYYIAENVKSNIRELEGALNTVSFYASIAGRKIDLDTAREALKNQ 358 >gi|41406099|ref|NP_958935.1| chromosomal replication initiation protein [Mycobacterium avium subsp. paratuberculosis K-10] gi|13431486|sp|Q9L7L7|DNAA_MYCPA RecName: Full=Chromosomal replication initiator protein DnaA gi|6969271|gb|AAF33692.1| putative dnaA [Mycobacterium avium subsp. paratuberculosis] gi|41394447|gb|AAS02318.1| DnaA [Mycobacterium avium subsp. paratuberculosis K-10] Length = 509 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 36/233 (15%), Positives = 86/233 (36%), Gaps = 28/233 (12%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRF 93 + D ++ ++ A + P+R + + G SG GK+ L + + F Sbjct: 173 RYTFDTFVIGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHA-AGNYAQRLF 231 Query: 94 SNI---AKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFHI 129 + S + D + L++DI ++ + + FH Sbjct: 232 PGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHT 291 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N++H + +++++ P L +R + + + P+ + ++ K Sbjct: 292 FNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQME 351 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ + + I +ER++ E + ++ A I +SLA VL++ Sbjct: 352 RLAVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKSLAEIVLRDL 404 >gi|238853339|ref|ZP_04643719.1| chromosomal replication initiator protein DnaA [Lactobacillus gasseri 202-4] gi|238834027|gb|EEQ26284.1| chromosomal replication initiator protein DnaA [Lactobacillus gasseri 202-4] Length = 454 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 43/265 (16%), Positives = 88/265 (33%), Gaps = 35/265 (13%) Query: 13 PDKQKNDQPKNKEEQLFF---------SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP 63 P++ +P+ K Q + D + + A + P Sbjct: 88 PERLVTPKPRIKTNQEILEDRRDEFAQDLQLNSKYTFDTFVQGEGNKLAAGAALAVADNP 147 Query: 64 SRV---VILVGPSGSGKSCLANIW-----SDKSRSTRFSNIAKSLDSILIDTRK------ 109 + + G G GK+ L ++K + +++ + I++ K Sbjct: 148 GSFYNPLFIFGGVGLGKTHLMQAIGHQMLAEKPHAKVVYIQSETFVNDFINSIKNKTQAE 207 Query: 110 ---------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 +L++DI + + FH +++ ++MT+ P Sbjct: 208 FRNKYRNCDLLLVDDIQFFSKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPELSER 267 Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 L SR V+I+ PD + ++ K + ID YI +++ ++ E + Sbjct: 268 LVSRFAWGLQVEITPPDLETRIAILRKKAETDGLAIDGSTLDYIASQVDTNIRELEGALV 327 Query: 218 KMDNLALSRGMGITRSLAAEVLKET 242 K+ A I LA E L + Sbjct: 328 KVQAHATIEREDINVDLAKEALADL 352 >gi|254476159|ref|ZP_05089545.1| chromosomal replication initiator protein DnaA [Ruegeria sp. R11] gi|214030402|gb|EEB71237.1| chromosomal replication initiator protein DnaA [Ruegeria sp. R11] Length = 459 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 39/244 (15%), Positives = 84/244 (34%), Gaps = 31/244 (12%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANI--WSDK 87 P + D +V E A ++L G G GK+ L + W K Sbjct: 118 PLDPRFTFDSFVVGKPNELAHAAARRVAEGGPVTFNPLVLYGGVGLGKTHLMHAIAWELK 177 Query: 88 SRSTRFSNIAKSLDSI------------------LIDTRKPVLLEDIDLLDFND---TQL 126 R+ + + S + L + ++++D+ + D + Sbjct: 178 DRNPELNVLYLSAEQFMYRFVQALRERKMMDFKHLFRSVDVLMVDDVQFIAGKDSTQEEF 237 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV-KM 185 FH N++ + ++++A P + SRL+ VV + D + ++ K+ Sbjct: 238 FHTFNALVDQNKQIIISADRAPGEIKDLEDRVRSRLQCGLVVDLHPTDYELRLGILQSKV 297 Query: 186 FADRQ----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 Q + I + ++ R+ ++ E + ++ A G I L + L + Sbjct: 298 AQQMQTYPDLRIADGVLEFLAHRISTNVRVLEGALTRLFAFASLVGREIDMELTQDCLAD 357 Query: 242 TQQC 245 + Sbjct: 358 VLRA 361 >gi|254773054|ref|ZP_05214570.1| chromosomal replication initiation protein [Mycobacterium avium subsp. avium ATCC 25291] Length = 509 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 36/233 (15%), Positives = 86/233 (36%), Gaps = 28/233 (12%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRF 93 + D ++ ++ A + P+R + + G SG GK+ L + + F Sbjct: 173 RYTFDTFVIGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHA-AGNYAQRLF 231 Query: 94 SNI---AKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFHI 129 + S + D + L++DI ++ + + FH Sbjct: 232 PGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHT 291 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N++H + +++++ P L +R + + + P+ + ++ K Sbjct: 292 FNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQME 351 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ + + I +ER++ E + ++ A I +SLA VL++ Sbjct: 352 RLAVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKSLAEIVLRDL 404 >gi|145588190|ref|YP_001154787.1| chromosomal replication initiator protein DnaA [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145046596|gb|ABP33223.1| chromosomal replication initiator protein DnaA [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 475 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 41/260 (15%), Positives = 92/260 (35%), Gaps = 30/260 (11%) Query: 13 PDKQKNDQPKNKEEQLFFSFP----RCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSR 65 P Q P E+ F ++ + + A + A + P Sbjct: 115 PQSQDESSPIISVEEQSFEIEDHSKLNPNLTFETFVTGKANQLARAASIQVAHNPGTSYN 174 Query: 66 VVILVGPSGSGKSCLANIWS-----DKSRST-RFSNIAKSLDSILID------------- 106 + L G G GK+ L + +K + R+ + + + ++ Sbjct: 175 PMFLYGGVGLGKTHLIHAIGNHLLKEKPNARIRYIHAEQYVSDVVRAYQQKAFDRFKRYY 234 Query: 107 -TRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 + +L++DI + F+ ++ S +++T+ T+P L SR Sbjct: 235 HSLDLLLIDDIQFFSGKSRTQEEFFYAFEALLSNKSQVIITSDTYPKEMAGIDDRLISRF 294 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 + V I P+ + +++K A I + + +A ++ + + ++ E + K+ Sbjct: 295 DSGLTVAIEPPELEMRVAILMKKAASEGIPMTEDVAFFVAKHLRSNVRELEGALRKILAF 354 Query: 223 ALSRGMGITRSLAAEVLKET 242 G +T +A LK+ Sbjct: 355 VRFHGREVTIDVARIALKDL 374 >gi|118466558|ref|YP_879304.1| chromosomal replication initiation protein [Mycobacterium avium 104] gi|118167845|gb|ABK68742.1| chromosomal replication initiator protein DnaA [Mycobacterium avium 104] Length = 498 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 36/233 (15%), Positives = 86/233 (36%), Gaps = 28/233 (12%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRF 93 + D ++ ++ A + P+R + + G SG GK+ L + + F Sbjct: 162 RYTFDTFVIGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHA-AGNYAQRLF 220 Query: 94 SNI---AKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFHI 129 + S + D + L++DI ++ + + FH Sbjct: 221 PGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHT 280 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N++H + +++++ P L +R + + + P+ + ++ K Sbjct: 281 FNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQME 340 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ + + I +ER++ E + ++ A I +SLA VL++ Sbjct: 341 RLAVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKSLAEIVLRDL 393 >gi|163743748|ref|ZP_02151122.1| chromosomal replication initiation protein [Phaeobacter gallaeciensis 2.10] gi|161383009|gb|EDQ07404.1| chromosomal replication initiation protein [Phaeobacter gallaeciensis 2.10] Length = 475 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 38/244 (15%), Positives = 84/244 (34%), Gaps = 31/244 (12%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANI--WSDK 87 P + D +V E A ++L G G GK+ L + W Sbjct: 134 PLDPRFTFDSFVVGKPNELAHAAARRVAEGGPVTFNPLVLYGGVGLGKTHLMHAIAWELT 193 Query: 88 SRSTRFSNIAKSLDSI------------------LIDTRKPVLLEDIDLLDFND---TQL 126 +R+ + + S + L + ++++D+ + D + Sbjct: 194 ARNPELNVLYLSAEQFMYRFVQALRERKMMDFKHLFRSVDVLMVDDVQFIAGKDSTQEEF 253 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV-KM 185 FH N++ + ++++A P + SRL+ VV + D + ++ K+ Sbjct: 254 FHTFNALVDQNKQIIISADRAPGEIKDLEDRVRSRLQCGLVVDLHPTDYELRLGILQSKV 313 Query: 186 FADRQ----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 Q + I + ++ R+ ++ E + ++ A G I L + L + Sbjct: 314 AQQMQTYPDLRIADGVLEFLAHRISTNVRVLEGALTRLFAFASLVGREIDMELTQDCLAD 373 Query: 242 TQQC 245 + Sbjct: 374 VLRA 377 >gi|304437932|ref|ZP_07397878.1| DNA-directed DNA replication initiator protein [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369072|gb|EFM22751.1| DNA-directed DNA replication initiator protein [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 483 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 32/223 (14%), Positives = 71/223 (31%), Gaps = 27/223 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLANIWSDKSRS 90 + + + + + + + P + + G G GK+ L + K + Sbjct: 147 NPKYTFEAFVTGRSNQFPYAMAKAVADAPGLPSHNPLFIYGGVGLGKTHLMHAVGHKILA 206 Query: 91 ------TRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDFND---TQLF 127 + + + R+ +L++DI + T+ F Sbjct: 207 DDPKKRVLYIASTDFTNEFIRSIREKNMDAFREKYYHIDVLLIDDIQFFAGQEQTQTEFF 266 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 N + S +++T+ P L SR V I P+ + ++ K Sbjct: 267 QTFNKLRDNGSQIILTSDRQPQDVKGLEDRLISRFAGGAPVDIQPPEFETRVAILQKKAQ 326 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 + I + YI R++ ++ E + ++ A M I Sbjct: 327 SEDVDIPADVVTYIASRVDSNIRELEGALTRLIKYASMMRMPI 369 >gi|225570325|ref|ZP_03779350.1| hypothetical protein CLOHYLEM_06422 [Clostridium hylemonae DSM 15053] gi|225160857|gb|EEG73476.1| hypothetical protein CLOHYLEM_06422 [Clostridium hylemonae DSM 15053] Length = 462 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 44/249 (17%), Positives = 84/249 (33%), Gaps = 46/249 (18%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSD----- 86 + D +V A + P + L G G GK+ L + + Sbjct: 114 NPKYTFDTFVVGGNNNFAHAASLAVAESPGEVYNPLFLYGGVGLGKTHLMHSIAHFILEK 173 Query: 87 ----------------------KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND- 123 K+ T + A S +L++DI + + Sbjct: 174 SPKKKVLYVTSETFTNELIDALKNGKTAGNESAMSKFRDKYRNNDVLLIDDIQFIIGKES 233 Query: 124 --TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 + FH N +H +++++ P L +R + + IS P+ + + Sbjct: 234 TQEEFFHTFNHLHTSGKQIIISSDKPPKDIETLEARLRTRFEWGLIADISAPNYETRMAI 293 Query: 182 IVKMFADRQIF---IDKKLAAYIVQRME---RSLV-FAEKLVD--KMDNLALSRGMGITR 232 + K ++ I + + YI ++ R L KL+ K++N A I Sbjct: 294 LQKKIELDKLEKYNIPQDVIEYIATNIKTNIRELEGSLNKLIALYKLNNNATQ----IDI 349 Query: 233 SLAAEVLKE 241 +LA+E LK+ Sbjct: 350 TLASEALKD 358 >gi|119025019|ref|YP_908864.1| chromosomal replication initiation protein [Bifidobacterium adolescentis ATCC 15703] gi|154486346|ref|ZP_02027753.1| hypothetical protein BIFADO_00155 [Bifidobacterium adolescentis L2-32] gi|118764603|dbj|BAF38782.1| chromosomal replication initiator protein DnaA [Bifidobacterium adolescentis ATCC 15703] gi|154084209|gb|EDN83254.1| hypothetical protein BIFADO_00155 [Bifidobacterium adolescentis L2-32] Length = 499 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 50/292 (17%), Positives = 95/292 (32%), Gaps = 55/292 (18%) Query: 5 KEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCL------------------------GISR 40 +E Y F P K P N+ Q P + + Sbjct: 102 EETYPRFSPAKSPAKSPANETMQGQLPIPATMPPEQDHFQSGQNRPLLDPETHLNKNATF 161 Query: 41 DDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSD---------KS 88 D + + A + + + + G SG GK+ L N + K Sbjct: 162 DTFVPGDSNRFARTVALAVAEGSGHDFNPLCIYGGSGLGKTHLLNAIGNYALVKDPNLKV 221 Query: 89 RSTRFSNIAKSLDSILIDTRKP----------------VLLEDIDLLDFNDTQL---FHI 129 R L DT + +L++DI L D L FH Sbjct: 222 RYVTSEEFTNEFIEALADTNQSSGQIKEFNRRYREVDVLLIDDIQFLSGKDATLEQFFHT 281 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N++HQ + +++ + P L SR ++ V + PD + ++ + Sbjct: 282 FNTLHQANKRIVIASDVPPKDLQGFNERLISRFESGLTVDVKPPDLETRIAILRMIATMN 341 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 I + I +R ++ E ++++ +A +T++LA + L++ Sbjct: 342 GSNIPNDVFNLIAERFTENIRELEGALNRVTAMASLSNQPVTKALAEQTLQD 393 >gi|221229344|ref|YP_002502760.1| chromosomal replication initiation protein [Mycobacterium leprae Br4923] gi|219932451|emb|CAR70094.1| putative chromosomal replication initiator protein [Mycobacterium leprae Br4923] Length = 521 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 34/233 (14%), Positives = 86/233 (36%), Gaps = 28/233 (12%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRF 93 + + ++ ++ A + P+R + + G SG GK+ L + + F Sbjct: 185 RYTFETFVIGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHA-AGNYAQRLF 243 Query: 94 SNI---AKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFHI 129 + S + D + L++DI ++ + + FH Sbjct: 244 PGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHT 303 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N++H + +++++ P L +R + + + P+ + ++ K Sbjct: 304 FNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQME 363 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ + + I +ER++ E + ++ A I ++LA VL++ Sbjct: 364 RLAVPGDVLELIASSIERNIRELEGALIRVTAFASLNKTAIDKALAEIVLRDL 416 >gi|307331907|ref|ZP_07611003.1| chromosomal replication initiator protein DnaA [Streptomyces violaceusniger Tu 4113] gi|306882425|gb|EFN13515.1| chromosomal replication initiator protein DnaA [Streptomyces violaceusniger Tu 4113] Length = 388 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 89/235 (37%), Gaps = 28/235 (11%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90 D ++ ++ A + P+ + + G SG GK+ L + +RS Sbjct: 50 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSL 109 Query: 91 -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128 R+ + + + + R +L++DI L + + FH Sbjct: 110 YPGTRVRYVSSEEFTNEFINSIRDGKADAFRRRYRDMDILLVDDIQFLASKESTQEEFFH 169 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 N++H + +++++ P V L D L +R + + + P+ + ++ K Sbjct: 170 TFNTLHNANKQIVLSSDRPPKQL-VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 228 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 Q+ ++ +I R+ R++ E + ++ A + LA VLK+ Sbjct: 229 QEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLAEIVLKDL 283 >gi|289770505|ref|ZP_06529883.1| chromosomal replication initiator protein DnaA [Streptomyces lividans TK24] gi|289700704|gb|EFD68133.1| chromosomal replication initiator protein DnaA [Streptomyces lividans TK24] Length = 656 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 89/236 (37%), Gaps = 28/236 (11%) Query: 34 RCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS 90 R D ++ ++ A + P+ + + G SG GK+ L + +RS Sbjct: 317 RNPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARS 376 Query: 91 ------TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLF 127 R+ + + + + R +L++DI L + + F Sbjct: 377 LYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFF 436 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMF 186 H N++H + +++++ P V L D L +R + + + P+ + ++ K Sbjct: 437 HTFNTLHNANKQIVLSSDRPPKQL-VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKA 495 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 Q+ ++ +I R+ R++ E + ++ A + L VLK+ Sbjct: 496 VQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDL 551 >gi|219685250|ref|ZP_03540070.1| chromosomal replication initiator protein DnaA [Borrelia garinii Far04] gi|219673346|gb|EED30365.1| chromosomal replication initiator protein DnaA [Borrelia garinii Far04] Length = 485 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 37/209 (17%), Positives = 77/209 (36%), Gaps = 26/209 (12%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRVV---ILVGPSGSGKSCLANIWSDKSRST-- 91 + ++ ++ A S P + ++ G G GK+ L +K+ Sbjct: 145 RYTFENFIIGPNNRLAYNASLSISKNPGKKYNPCLIYGGVGLGKTHLLQSIGNKTEELHN 204 Query: 92 ---RFSNIAKSLDSILIDTRKP---------------VLLEDIDLLDFND---TQLFHII 130 A++ + +++ K +L++DI L + +LFH Sbjct: 205 NLKILYVTAENFLNEFVESIKTHETKKFKKKYRYLDMLLIDDIHDLQKKEGIQEELFHTF 264 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N++++ + L+ T P L SR V IS P+ + +I K + Sbjct: 265 NALYEDNKQLVFTCDRSPSELTNFTDRLKSRFTRGLNVDISKPNFELRVAIIEKKAEEDG 324 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 I + K + + Q++ ++ E V K+ Sbjct: 325 IKVPKDILNLVAQKVTTNVRDLEAAVTKL 353 >gi|219684275|ref|ZP_03539219.1| chromosomal replication initiator protein DnaA [Borrelia garinii PBr] gi|219672264|gb|EED29317.1| chromosomal replication initiator protein DnaA [Borrelia garinii PBr] Length = 485 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 37/209 (17%), Positives = 77/209 (36%), Gaps = 26/209 (12%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRVV---ILVGPSGSGKSCLANIWSDKSRST-- 91 + ++ ++ A S P + ++ G G GK+ L +K+ Sbjct: 145 RYTFENFIIGPNNRLAYNASLSISKNPGKKYNPCLIYGGVGLGKTHLLQSIGNKTEELHN 204 Query: 92 ---RFSNIAKSLDSILIDTRKP---------------VLLEDIDLLDFND---TQLFHII 130 A++ + +++ K +L++DI L + +LFH Sbjct: 205 NLKILYVTAENFLNEFVESIKTHETKKFKKKYRYLDMLLIDDIHDLQKKEGIQEELFHTF 264 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N++++ + L+ T P L SR V IS P+ + +I K + Sbjct: 265 NALYEDNKQLVFTCDRSPSELTNFTDRLKSRFTRGLNVDISKPNFELRVAIIEKKAEEDG 324 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 I + K + + Q++ ++ E V K+ Sbjct: 325 IKVPKDILNLVAQKVTTNVRDLEAAVTKL 353 >gi|51598691|ref|YP_072879.1| chromosomal replication initiator protein [Borrelia garinii PBi] gi|61212541|sp|Q661I4|DNAA_BORGA RecName: Full=Chromosomal replication initiator protein DnaA gi|51573262|gb|AAU07287.1| chromosomal replication initiator protein [Borrelia garinii PBi] Length = 484 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 37/209 (17%), Positives = 77/209 (36%), Gaps = 26/209 (12%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRVV---ILVGPSGSGKSCLANIWSDKSRST-- 91 + ++ ++ A S P + ++ G G GK+ L +K+ Sbjct: 144 RYTFENFIIGPNNRLAYNASLSISKNPGKKYNPCLIYGGVGLGKTHLLQSIGNKTEELHN 203 Query: 92 ---RFSNIAKSLDSILIDTRKP---------------VLLEDIDLLDFND---TQLFHII 130 A++ + +++ K +L++DI L + +LFH Sbjct: 204 NLKILYVTAENFLNEFVESIKTHETKKFKKKYRYLDMLLIDDIHDLQKKEGIQEELFHTF 263 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N++++ + L+ T P L SR V IS P+ + +I K + Sbjct: 264 NALYEDNKQLVFTCDRSPSELTNFTDRLKSRFTRGLNVDISKPNFELRVAIIEKKAEEDG 323 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 I + K + + Q++ ++ E V K+ Sbjct: 324 IKVPKDILNLVAQKVTTNVRDLEAAVTKL 352 >gi|226303490|ref|YP_002763448.1| chromosomal replication initiator protein DnaA [Rhodococcus erythropolis PR4] gi|229491154|ref|ZP_04384982.1| chromosomal replication initiator protein DnaA [Rhodococcus erythropolis SK121] gi|259645258|sp|C0ZLE1|DNAA_RHOE4 RecName: Full=Chromosomal replication initiator protein DnaA gi|226182605|dbj|BAH30709.1| chromosomal replication initiator protein DnaA [Rhodococcus erythropolis PR4] gi|229321892|gb|EEN87685.1| chromosomal replication initiator protein DnaA [Rhodococcus erythropolis SK121] Length = 520 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 36/236 (15%), Positives = 86/236 (36%), Gaps = 28/236 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91 + D ++ S+ A + P+R + + G SG GK+ L + + Sbjct: 182 NAKYTFDTFVIGSSNRFAHAAAVAIAEAPARAYNPLFIWGASGLGKTHLLHA-AGHYAQR 240 Query: 92 RFSNI---AKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLF 127 F + S + D + L++DI ++ + + F Sbjct: 241 LFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRRYRETDVLLVDDIQFIEGKEGIQEEFF 300 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++H + +++++ P L +R + + + P+ + ++ K Sbjct: 301 HTFNTLHNANKQIVVSSDRPPKQLATLEERLRTRFEWGLITDVQPPELETRIAILSKKAR 360 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 ++ + + I R+ER++ E + ++ A + +LA VL++ Sbjct: 361 MDRLEVPHDVLELIASRIERNIRELEGALIRVTAFASLNRQPLDLTLAEVVLRDLM 416 >gi|83815237|ref|YP_444159.1| chromosomal replication initiator protein DnaA [Salinibacter ruber DSM 13855] gi|83756631|gb|ABC44744.1| chromosomal replication initiator protein DnaA [Salinibacter ruber DSM 13855] Length = 524 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 45/266 (16%), Positives = 94/266 (35%), Gaps = 37/266 (13%) Query: 16 QKNDQPKNKEEQLFFSFP----------RCLGISRDDLLVHSAIEQAVRL---IDSWPSW 62 + D+ Q F+ P + D + + A I + P Sbjct: 157 AEGDEKSAPPVQNPFAIPGLKNAEVDNQLNDSYTFDRFIEGACNRLARSAAHSIATDPGE 216 Query: 63 PS-RVVILVGPSGSGKSCLA-----NIWSDKSRSTRFSNIAKSLDSILIDTR-------- 108 S ++ G G GK+ L ++ + + T F ++ + + + Sbjct: 217 TSFNPFLVYGGVGLGKTHLIQAIGNHVAARDASKTVFYVSSERFTTEFVQSIQENQIGEF 276 Query: 109 -------KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158 ++++D+ + + FHI N++ Q + ++++A P L Sbjct: 277 STFYRQVDVLIVDDVQFFGGKEKTQEEFFHIFNALRQAGNQIVLSADRPPREIDGLEERL 336 Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218 SR + + P D ++ + D I +D + +I Q +E ++ E + + Sbjct: 337 LSRFQWGLSADLKPPGLDTRISILRRKAEDDGIDLDDDVVEFIAQSIESNIRELEGALIR 396 Query: 219 MDNLALSRGMGITRSLAAEVLKETQQ 244 + A + IT LA EVL + Q Sbjct: 397 LLAHATLHQLDITLDLAKEVLHDLFQ 422 >gi|15826866|ref|NP_301129.1| chromosomal replication initiation protein [Mycobacterium leprae TN] gi|13092413|emb|CAC29509.1| putative chromosomal replication initiator protein [Mycobacterium leprae] Length = 521 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 34/233 (14%), Positives = 86/233 (36%), Gaps = 28/233 (12%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRF 93 + + ++ ++ A + P+R + + G SG GK+ L + + F Sbjct: 185 RYTFETFVIGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHA-AGNYAQRLF 243 Query: 94 SNI---AKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFHI 129 + S + D + L++DI ++ + + FH Sbjct: 244 PGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHT 303 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N++H + +++++ P L +R + + + P+ + ++ K Sbjct: 304 FNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQME 363 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ + + I +ER++ E + ++ A I ++LA VL++ Sbjct: 364 RLAVPGDVLELIASSIERNIRELEGALIRVTAFASLNKTAIDKALAEIVLRDL 416 >gi|84501260|ref|ZP_00999465.1| chromosomal replication initiation protein [Oceanicola batsensis HTCC2597] gi|84390551|gb|EAQ03039.1| chromosomal replication initiation protein [Oceanicola batsensis HTCC2597] Length = 470 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 37/264 (14%), Positives = 85/264 (32%), Gaps = 34/264 (12%) Query: 13 PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVIL 69 P + P + Q P + D +V E A + L Sbjct: 112 PAQPAKASPMDTMLQAA---PLDPRFTFDRFVVGKPNELAHAAARRVAEAGPVTFNPLFL 168 Query: 70 VGPSGSGKSCLANI--WSDKSRSTRFSNIAKSLDSI------------------LIDTRK 109 G G GK+ L + W ++ + + S + L T Sbjct: 169 YGGVGLGKTHLMHAIAWELQTHRPDLTVVYLSAEQFMYRFVQAIRERRTMDFKSLFRTVD 228 Query: 110 PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 ++++D+ + D + FH N++ + ++++ P + SR++ Sbjct: 229 VLMVDDVQFIAGKDSTQEEFFHTFNALVDQNKQIIISGDRAPGEMTDMEERIRSRMQCGL 288 Query: 167 VVKISLPDDDFLEKVIVKM--FADRQ---IFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 +V + D + ++ Q + + + ++ R+ ++ E + ++ Sbjct: 289 IVDLHPTDYELRLGILQSKVDAQRAQYPDLKLADGVLEFLAHRISTNVRVLEGALTRLFA 348 Query: 222 LALSRGMGITRSLAAEVLKETQQC 245 + G IT L E L + + Sbjct: 349 FSSLVGREITLDLTQECLSDILRA 372 >gi|328883703|emb|CCA56942.1| Chromosomal replication initiator protein DnaA [Streptomyces venezuelae ATCC 10712] Length = 591 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 87/235 (37%), Gaps = 28/235 (11%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90 D ++ S+ A + P+ + + G SG GK+ L + +RS Sbjct: 253 NPKYLFDTFVIGSSNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSL 312 Query: 91 -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128 R+ + + + + R +L++DI L + + FH Sbjct: 313 YPGTRVRYVSSEEFTNEFINSIRDGKGDAFRKRYRDVDILLVDDIQFLASKESTQEEFFH 372 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 N++H + +++++ P V L D L +R + + P+ + ++ K Sbjct: 373 TFNTLHNANKQIVLSSDRPPKQL-VTLEDRLRNRFEWGLTTDVQPPELETRIAILRKKAV 431 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 Q+ ++ +I R+ R++ E + ++ A + L VLK+ Sbjct: 432 QEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDL 486 >gi|32141219|ref|NP_733620.1| chromosomal replication initiation protein [Streptomyces coelicolor A3(2)] gi|118710|sp|P27902|DNAA_STRCO RecName: Full=Chromosomal replication initiator protein DnaA gi|153240|gb|AAA26734.1| DnaA [Streptomyces coelicolor A3(2)] gi|24413863|emb|CAD55464.1| chromosomal replication initiator protein [Streptomyces coelicolor A3(2)] Length = 656 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 88/235 (37%), Gaps = 28/235 (11%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90 D ++ ++ A + P+ + + G SG GK+ L + +RS Sbjct: 318 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSL 377 Query: 91 -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128 R+ + + + + R +L++DI L + + FH Sbjct: 378 YPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFH 437 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 N++H + +++++ P V L D L +R + + + P+ + ++ K Sbjct: 438 TFNTLHNANKQIVLSSDRPPKQL-VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 496 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 Q+ ++ +I R+ R++ E + ++ A + L VLK+ Sbjct: 497 QEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDL 551 >gi|225352379|ref|ZP_03743402.1| hypothetical protein BIFPSEUDO_03996 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225156886|gb|EEG70255.1| hypothetical protein BIFPSEUDO_03996 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 530 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 46/269 (17%), Positives = 93/269 (34%), Gaps = 34/269 (12%) Query: 10 FFVPDKQKNDQPKNKEEQLFFSFPRCLG-ISRDDLLVHSAIEQAVRLIDSWPSWPS---R 65 +P ++ N+ + + L + D + + A + + Sbjct: 163 VVMPPERHNNFQRGQNRPLLDPKTHLNKNATFDTFVPGDSNRFARTVALAVAEGSGHDFN 222 Query: 66 VVILVGPSGSGKSCLANIWSD---------KSRSTRFSNIAKSLDSILIDTR-------- 108 + + G SG GK+ L N + K R L DT Sbjct: 223 PLCIYGGSGLGKTHLLNAIGNYALVKDPTLKVRYVTSEEFTNEFIEALGDTNQNSGQIKE 282 Query: 109 --------KPVLLEDIDLLDFNDTQL---FHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 +L++DI L D L FH N++HQ + +++ + P Sbjct: 283 FNRRYREVDVLLIDDIQFLSGKDATLEQFFHTFNTLHQANKRIVIASDVPPKDLQGFNER 342 Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 L SR ++ V + PD + ++ + + + I +R ++ E ++ Sbjct: 343 LISRFESGLTVDVKPPDLETRIAILRMIAH--GTNVQDDVLNLIAERFTENIRELEGALN 400 Query: 218 KMDNLALSRGMGITRSLAAEVLKETQQCD 246 ++ +A G +TR+LA + L++ D Sbjct: 401 RVTAMASLSGQPVTRALAEQTLQDFFSTD 429 >gi|158336233|ref|YP_001517407.1| chromosomal replication initiation protein [Acaryochloris marina MBIC11017] gi|189044628|sp|B0CDM2|DNAA_ACAM1 RecName: Full=Chromosomal replication initiator protein DnaA gi|158306474|gb|ABW28091.1| chromosomal replication initiator protein DnaA [Acaryochloris marina MBIC11017] Length = 455 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 36/224 (16%), Positives = 72/224 (32%), Gaps = 34/224 (15%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN 82 +Q + +V A + P R + L G G GK+ L Sbjct: 114 QQASLN----PKYVFSRYVVGPNNRMAHAACLAVAESPGREFNPLFLCGGVGLGKTHLMQ 169 Query: 83 IW-----------------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFN 122 +++ + + I K + + V L++DI ++ Sbjct: 170 AIGHYRLEISPNSRIFYISTEQFTNDLIAAIRKDGMQKFREHYRAVDVMLVDDIQFIEGK 229 Query: 123 D---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179 + + FH N++H+ +++ + P LCSR + I PD + Sbjct: 230 EYTQEEFFHTFNTLHEAGKQVVLASDRPPSQIPRLQERLCSRFSMGLIADIQPPDLETRM 289 Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRME---RSLV-FAEKLVDKM 219 ++ K I + +++ YI R L + V + Sbjct: 290 AILQKKAEYENIRLPREVIEYIASSYTSNIRELEGALIRAVAYI 333 >gi|239930175|ref|ZP_04687128.1| chromosomal replication initiation protein [Streptomyces ghanaensis ATCC 14672] Length = 638 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 88/235 (37%), Gaps = 28/235 (11%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90 D ++ ++ A + P+ + + G SG GK+ L + +RS Sbjct: 300 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSL 359 Query: 91 -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128 R+ + + + + R +L++DI L + + FH Sbjct: 360 YPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFH 419 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 N++H + +++++ P V L D L +R + + + P+ + ++ K Sbjct: 420 TFNTLHNANKQIVLSSDRPPKQL-VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 478 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 Q+ ++ +I R+ R++ E + ++ A + L VLK+ Sbjct: 479 QEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDL 533 >gi|300781938|ref|YP_003762229.1| chromosomal replication initiator protein DnaA [Amycolatopsis mediterranei U32] gi|299791452|gb|ADJ41827.1| chromosomal replication initiator protein DnaA [Amycolatopsis mediterranei U32] Length = 547 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 90/234 (38%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90 + D ++ ++ A + P+ + + G SG GK+ L + ++ Sbjct: 208 NEKYTFDTFVIGASNRFAHAAAVAVAEAPARAYNPLFIWGESGLGKTHLLHAVGHYAQRL 267 Query: 91 -----TRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDFND---TQLFH 128 R+ + + + + R +L++DI L+ + + FH Sbjct: 268 FPGMRVRYVSTEEFTNDFINSLRDDRKVAFQRRYRDIDILLVDDIQFLEGKEGTQEEFFH 327 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H + +++++ P L +R + + I P+ + ++ K A Sbjct: 328 TFNTLHNANKQIVVSSDRPPKRLETLEDRLRTRFEWGLITDIQPPELETRIAILRKKAAQ 387 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ + ++ +I R+E ++ E + ++ A + +LA VL++ Sbjct: 388 DRLAVPGEVLEFIASRVEANIRELEGALIRVTAFASLNQQPVDSALAEIVLRDL 441 >gi|257456142|ref|ZP_05621339.1| chromosomal replication initiator protein DnaA [Treponema vincentii ATCC 35580] gi|257446228|gb|EEV21274.1| chromosomal replication initiator protein DnaA [Treponema vincentii ATCC 35580] Length = 464 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 34/233 (14%), Positives = 79/233 (33%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAI---EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK---- 87 + D ++ + A + P +++ G G GK+ L + Sbjct: 128 NERYTFDKFVIDADNPLPANAAIAVSKNPGTAYNPLLIYGGVGLGKTHLMQAIGNALYQN 187 Query: 88 SRSTRFSNIAKSLDSILID---------------TRKPVLLEDI---DLLDFNDTQLFHI 129 + A++ + I +LL+DI + + +LFH Sbjct: 188 TNLKILYAPAETFTNEYIAHVNKNKMHEFKNKYRNADVLLLDDIHFLEKKEGTQEELFHT 247 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N++++ + ++ T L SR + + +P + ++ K D Sbjct: 248 FNALYESNKQIVFTCDRPVEELKNLTDRLRSRFTRGLSIDLKIPSYETRCAILFKKLQDE 307 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 I ++ I + + ++ E + K++ + IT A +L++T Sbjct: 308 HFSIPDEVVHLIAKNVSSNVRDLESALTKLEAYS-ELTGPITLENAQRLLQDT 359 >gi|153811986|ref|ZP_01964654.1| hypothetical protein RUMOBE_02379 [Ruminococcus obeum ATCC 29174] gi|149831885|gb|EDM86971.1| hypothetical protein RUMOBE_02379 [Ruminococcus obeum ATCC 29174] Length = 459 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 41/241 (17%), Positives = 87/241 (36%), Gaps = 29/241 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLAN-----IWSD 86 D +V + + A + P + + G +G GK+ L + I Sbjct: 119 NPKYIFDTFIVGNNNKFAQAAALAVAESPGDTYNPLFIYGGAGLGKTHLMHSIAHYIIEH 178 Query: 87 KSRSTRFSNIAKSLDSILIDTRK------------------PVLLEDIDLLDFND---TQ 125 S ++ + LI+T + +L++DI + + + Sbjct: 179 DENSKVLYVTSEEFTNELIETIRNGNNSAMSKFREKYRNIDVLLVDDIQFIIGKESTQEE 238 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 FH NS+H +++++ P + SR + + I+LPD + ++ K Sbjct: 239 FFHTFNSLHSAKKQIIISSDKPPKDMEILEERFRSRFEWGLIADITLPDYETRMAILHKK 298 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 I +++ YI ++ ++ E +K+ + +T LA + LK+ Sbjct: 299 EELEGYNISEEVIKYIATNIKSNIRELEGAFNKVMASSKLEKKEVTLELAEQALKDIISP 358 Query: 246 D 246 D Sbjct: 359 D 359 >gi|91200553|emb|CAJ73602.1| similar to replication initiation protein DnaA [Candidatus Kuenenia stuttgartiensis] Length = 495 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 37/238 (15%), Positives = 81/238 (34%), Gaps = 29/238 (12%) Query: 31 SFPRCLGISRDDLLVHSAIEQAV----RLI-DSWPSWPSRVVILVGPSGSGKSCLA-NIW 84 + G+ +D ++ A +I + +P P + + G G GK+ L IW Sbjct: 155 ALGLNKGLLLEDFVIGPNNRLAYTAALEMIKEEYP--PFNPLFIHGNVGVGKTHLLVGIW 212 Query: 85 -----SDKSRSTRFSNIAKSLDSILIDTRK-------------PVLLEDIDLLD---FND 123 + S + + I + L++D+ L Sbjct: 213 NRVRKEQTVNAVYMSAEKWTNEFIYALQKGKMESFRQRYRNVDVFLIDDVHFLSNKQGVQ 272 Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 + H N+++ ++ + P +L SR + V +I P+ ++ Sbjct: 273 EEFLHTFNALYDSSKRIIFASDAHPKQISQLKENLASRFMSGMVARIERPEYATRLLILR 332 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + ++ ++ YI ++ + S+ E + + A I + +VLKE Sbjct: 333 TKASKYDVYFPEEALEYIAEKFDDSVREVESALVTLTAHARFNDRKIDIAFVKDVLKE 390 >gi|91201685|emb|CAJ74745.1| similar to chromosomal replication initiator protein DnaA [Candidatus Kuenenia stuttgartiensis] Length = 495 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 37/238 (15%), Positives = 81/238 (34%), Gaps = 29/238 (12%) Query: 31 SFPRCLGISRDDLLVHSAIEQAV----RLI-DSWPSWPSRVVILVGPSGSGKSCLA-NIW 84 + G+ +D ++ A +I + +P P + + G G GK+ L IW Sbjct: 155 ALGLNKGLLLEDFVIGPNNRLAYTAALEMIKEEYP--PFNPLFIHGNVGVGKTHLLVGIW 212 Query: 85 -----SDKSRSTRFSNIAKSLDSILIDTRK-------------PVLLEDIDLLD---FND 123 + S + + I + L++D+ L Sbjct: 213 NRVRKEQTVNAVYMSAEKWTNEFIYALQKGKMESFRQRYRNVDVFLIDDVHFLSNKQGVQ 272 Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 + H N+++ ++ + P +L SR + V +I P+ ++ Sbjct: 273 EEFLHTFNALYDSSKRIIFASDAHPKQISQLKENLASRFMSGMVARIERPEYATRLLILR 332 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + ++ ++ YI ++ + S+ E + + A I + +VLKE Sbjct: 333 TKASKYDVYFPEEALEYIAEKFDDSVREVESALVTLTAHARFNDRKIDIAFVKDVLKE 390 >gi|302559666|ref|ZP_07312008.1| chromosomal replication initiator protein DnaA [Streptomyces griseoflavus Tu4000] gi|302477284|gb|EFL40377.1| chromosomal replication initiator protein DnaA [Streptomyces griseoflavus Tu4000] Length = 652 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 39/236 (16%), Positives = 88/236 (37%), Gaps = 28/236 (11%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90 D ++ ++ A + P+ + + G SG GK+ L + +RS Sbjct: 314 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSL 373 Query: 91 -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128 R+ + + + + R +L++DI L + + FH Sbjct: 374 YPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFH 433 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 N++H + +++++ P V L D L +R + + + P+ + ++ K Sbjct: 434 TFNTLHNANKQIVLSSDRPPKQL-VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 492 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 Q+ ++ +I R+ R++ E + ++ A + L VLK+ Sbjct: 493 QEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDLM 548 >gi|291452646|ref|ZP_06592036.1| chromosomal replication initiator protein dnaA [Streptomyces albus J1074] gi|291355595|gb|EFE82497.1| chromosomal replication initiator protein dnaA [Streptomyces albus J1074] Length = 648 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 88/235 (37%), Gaps = 28/235 (11%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90 D ++ ++ A + P+ + + G SG GK+ L + +RS Sbjct: 310 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFVYGESGLGKTHLLHAIGHYARSL 369 Query: 91 -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128 R+ + + + + R +L++DI L + + FH Sbjct: 370 YPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFH 429 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 N++H + +++++ P V L D L +R + + + P+ + ++ K Sbjct: 430 TFNTLHNANKQIVLSSDRPPKQL-VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 488 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 Q+ ++ +I R+ R++ E + ++ A + L VLK+ Sbjct: 489 QEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDL 543 >gi|169830220|ref|YP_001716202.1| chromosomal replication initiation protein [Candidatus Desulforudis audaxviator MP104C] gi|169637064|gb|ACA58570.1| chromosomal replication initiator protein DnaA [Candidatus Desulforudis audaxviator MP104C] Length = 445 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 44/263 (16%), Positives = 93/263 (35%), Gaps = 32/263 (12%) Query: 12 VPDKQKN-DQPKNKEEQLFFSFPR-CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66 VP+ +K +P +K L + D +V ++ A + P + Sbjct: 86 VPEVKKYLSRPLDK---LSTDLSALNPKYTFDSFVVGNSNRFAHAAAFAVADTPVKAYNP 142 Query: 67 VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTRK 109 + L G G GK+ L + S++ + + I + Sbjct: 143 LFLYGGVGLGKTHLMHAIGHHILGNHSRYRIAYVTSERFTNDLINAIKDDQTPQFRSKYR 202 Query: 110 PV---LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 + L++DI L + + FH NS+++ +++++ P L SR + Sbjct: 203 SIDILLIDDIQFLAGKERTQEEFFHTFNSLYEDAKQIVISSDRPPKEIPTLEERLRSRFE 262 Query: 164 AATVVKISLPDDDFLEKVIVKMF-ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 + I PD + ++ K ++ + + YI R++ ++ E ++ Sbjct: 263 WGLITDIQPPDLETRIAILRKKLQSEENSLVPDETILYIADRIQSNIRELEGAFIRVSAY 322 Query: 223 ALSRGMGITRSLAAEVLKETQQC 245 A ++ AAE+LK Sbjct: 323 ASLNRTIVSPENAAEILKNILPP 345 >gi|30248032|ref|NP_840102.1| dnaA; chromosomal replication initiator protein [Nitrosomonas europaea ATCC 19718] gi|38257436|sp|Q82Y84|DNAA_NITEU RecName: Full=Chromosomal replication initiator protein DnaA gi|30179917|emb|CAD83912.1| dnaA; chromosomal replication initiator protein [Nitrosomonas europaea ATCC 19718] Length = 459 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 41/253 (16%), Positives = 87/253 (34%), Gaps = 32/253 (12%) Query: 16 QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGP 72 Q K QL + D + A + A + P + + G Sbjct: 112 QGVTSRKTNPSQL------NASFTFDAFVTGKANQLARAGAIQVAERPGIAYNPLFIYGG 165 Query: 73 SGSGKSCLANIWS------DKSRSTRFSNIAKSLDSILID--------------TRKPVL 112 G GK+ L D R+ + K + ++ + +L Sbjct: 166 VGLGKTHLMQAIGNYVLELDAGAKIRYVHAEKYVSDVVSAYQHKSFDKFKLYYHSLDLLL 225 Query: 113 LEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 ++D+ + F+ N++ + +++T+ +P L SR V Sbjct: 226 VDDVQFFSGKNRTQEEFFYAFNALIEAHKQVIITSDCYPKEISGLEERLVSRFGWGLTVA 285 Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229 I P+ + +++K +I +D+ A +I + + ++ E + ++ + G Sbjct: 286 IEPPELEMRVAILLKKALAEKIELDENTAFFIAKYIRSNVRELEGALKRVLAFSRFTGHS 345 Query: 230 ITRSLAAEVLKET 242 I+ LA E LK+ Sbjct: 346 ISLDLAKEALKDL 358 >gi|14195657|sp|P46388|DNAA_MYCLE RecName: Full=Chromosomal replication initiator protein DnaA Length = 502 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 34/233 (14%), Positives = 86/233 (36%), Gaps = 28/233 (12%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRF 93 + + ++ ++ A + P+R + + G SG GK+ L + + F Sbjct: 166 RYTFETFVIGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHA-AGNYAQRLF 224 Query: 94 SNI---AKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFHI 129 + S + D + L++DI ++ + + FH Sbjct: 225 PGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHT 284 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N++H + +++++ P L +R + + + P+ + ++ K Sbjct: 285 FNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQME 344 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ + + I +ER++ E + ++ A I ++LA VL++ Sbjct: 345 RLAVPGDVLELIASSIERNIRELEGALIRVTAFASLNKTAIDKALAEIVLRDL 397 >gi|261884959|ref|ZP_06008998.1| chromosomal replication initiation protein [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 311 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 35/210 (16%), Positives = 72/210 (34%), Gaps = 24/210 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN---IWSDKS 88 + + +V + + A P +V + + G +G GK+ L + + Sbjct: 102 NPSYTFESFVVGDSNQFAYISSQQAAQNPGKVYNPLFIYGSTGLGKTHLLQSIGNYCLEH 161 Query: 89 RSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHII 130 T ++ S I + +L++DI ++ + FH Sbjct: 162 GKTVICVTSEQFMSDFIRNVENRTMNKFKEKYRNCDILLIDDIQFFHKSEKTQEEFFHTF 221 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N IH ++MT+ P L SR + + I+ P+ D ++I Sbjct: 222 NEIHAKKGQIVMTSDKPPKMLKGFEERLKSRFEWGLMADITPPELDTKIRIIKAKCEFDG 281 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 I + + YI M ++ E + ++ Sbjct: 282 INLSSDIIEYIATNMGDNIREIESAIININ 311 >gi|306834600|ref|ZP_07467712.1| DNA-directed DNA replication initiator protein [Streptococcus bovis ATCC 700338] gi|304423236|gb|EFM26390.1| DNA-directed DNA replication initiator protein [Streptococcus bovis ATCC 700338] Length = 451 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 39/264 (14%), Positives = 86/264 (32%), Gaps = 36/264 (13%) Query: 12 VPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVI 68 VP QKN P + D+ + A + P + Sbjct: 97 VPTTQKNTLP-------LVDSDLNTKYTFDNFVQGDENRWAFSASYAVADAPGTTYNPLF 149 Query: 69 LVGPSGSGKSCLANIWSDKS------------------RSTRFSNIAKSLDSILIDTRKP 110 + G G GK+ L N + +++ + R Sbjct: 150 IWGGPGLGKTHLLNAIGNAVLQNNPNARVKYITAENFINEFVIHIRLDTMEELKEKFRNL 209 Query: 111 --VLLEDIDLLD-----FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 +L++DI L + F+ N+++ + +++T+ P L +R K Sbjct: 210 DVLLIDDIQSLAKKTLSGTQEEFFNTFNALYDNNKQIVLTSDRTPDHLDNLEQRLVTRFK 269 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD-NL 222 + I+ PD + ++ + + Y+ + + ++ E + + Sbjct: 270 WGLTINITPPDFETRVAILTNKTQEYNYIFPQDTIEYLAGQFDSNVRDLEGALKDISLVA 329 Query: 223 ALSRGMGITRSLAAEVLKETQQCD 246 ++ + IT +AAE ++ +Q D Sbjct: 330 SIKKIETITVDVAAEAIRARKQDD 353 >gi|289547952|ref|YP_003472940.1| chromosomal replication initiator protein DnaA [Thermocrinis albus DSM 14484] gi|289181569|gb|ADC88813.1| chromosomal replication initiator protein DnaA [Thermocrinis albus DSM 14484] Length = 394 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 32/209 (15%), Positives = 81/209 (38%), Gaps = 25/209 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91 + ++ +V + + A ++ P R + L G G GK+ L + +++++ Sbjct: 76 NPRYTFENFVVGPSNQLAYKVCLEVAENPGRSFSPLFLYGSVGLGKTHLLHAIGNRAKTK 135 Query: 92 RFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFNDT---QLFHII 130 + + S++ + K + LL+D+ L + +LF + Sbjct: 136 GYRAMYSSINDFSEEMVKALKEGKIEKFREKYINVDILLLDDVQFLAGKERTQMELFRVF 195 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 + ++ +++ + P L SR ++ +++I L DD+ VI K + Sbjct: 196 EKLQTFEKQIVLVSDRHPKDLKDVPDRLVSRFESGLLLEIGL-DDETRISVIKKKLMEYG 254 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 + + +Y+ + ++ E + M Sbjct: 255 FSPEDSVVSYVAENTGYNVREIEGFIRTM 283 >gi|84514654|ref|ZP_01002018.1| chromosomal replication initiation protein [Loktanella vestfoldensis SKA53] gi|84511705|gb|EAQ08158.1| chromosomal replication initiation protein [Loktanella vestfoldensis SKA53] Length = 447 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 35/244 (14%), Positives = 79/244 (32%), Gaps = 31/244 (12%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSD--K 87 P + D +V E A + L G G GK+ L + + + Sbjct: 106 PLDARFTFDTFVVGKPNELAHAAARRVADGGPVTFNPLFLYGGVGLGKTHLMHAIAHELQ 165 Query: 88 SRSTRFSNIAKSLDSI------------------LIDTRKPVLLEDIDLLDFND---TQL 126 RS + + S + L + ++++D+ + D + Sbjct: 166 RRSPELNVLYLSAEQFMYRFITALRERKMMDFKQLFRSVDVLMVDDVQFIAGKDSTQEEF 225 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM- 185 FH N++ ++++A P + SRL+ VV + D + ++ Sbjct: 226 FHTFNALVDGQKQIIISADRAPGEIKDLEDRIRSRLQCGLVVDLHPTDYELRLGILQSKV 285 Query: 186 ----FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + + + ++ R+ ++ E + ++ A G I L + L + Sbjct: 286 DAFSAQYPGLAVAPGVLEFLAHRISTNVRVLEGALTRLFAFASLVGREINLELTQDCLSD 345 Query: 242 TQQC 245 + Sbjct: 346 VLKA 349 >gi|228931507|ref|ZP_04094417.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228828150|gb|EEM73874.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 313 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 79/205 (38%), Gaps = 23/205 (11%) Query: 60 PSWPSRVVILVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDTRK----- 109 P+ + + G G GK+ L + + + ++ + I++ + Sbjct: 7 PAKAYNPLFIYGGVGLGKTHLMHAIGHYVIEHNPNAKVVYLSSEKFTNEFINSIRDNKAV 66 Query: 110 ----------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156 +L++DI L + + FH N++H+ +++++ P Sbjct: 67 DFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFHTFNALHEESKQIVISSDRPPKEIPTLED 126 Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216 L SR + + I+ PD + ++ K + I ++ YI +++ ++ E + Sbjct: 127 RLRSRFEWGLITDITPPDLETRIAILRKKAKAEGLDIPNEVMLYIANQIDSNIRELEGAL 186 Query: 217 DKMDNLALSRGMGITRSLAAEVLKE 241 ++ + I LAAE L++ Sbjct: 187 IRVVAYSSLINKDINADLAAEALRD 211 >gi|302380126|ref|ZP_07268599.1| chromosomal replication initiator protein DnaA [Finegoldia magna ACS-171-V-Col3] gi|302312068|gb|EFK94076.1| chromosomal replication initiator protein DnaA [Finegoldia magna ACS-171-V-Col3] Length = 487 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 34/210 (16%), Positives = 78/210 (37%), Gaps = 27/210 (12%) Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDK-----SRSTRFSNIAKSLDSILIDTRK----- 109 P+ + + G +G GK+ L + + + ++ ++S + LI + Sbjct: 176 PATAYNPLFIHGKAGLGKTHLMHAIAHEILKNNPKARVIYTTSESFTNELISSIGDKSTK 235 Query: 110 -------------PVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 +L++DI + + FH N ++ ++ +++++ P Sbjct: 236 KNSQFRQKYRNIDVLLIDDIQFIAGKQGTQEEFFHTFNELYNHNKQIILSSDRPPKEIKT 295 Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213 L SR + + I PD + ++ + + ++ YI ++ ++ E Sbjct: 296 LEERLVSRFEWGLMADIQPPDYETRVAIVNEYLDRNNTSLPPEIIDYIAMNVKSNIRELE 355 Query: 214 KLV-DKMDNLALSRGMGITRSLAAEVLKET 242 V + + L IT LA VLK+ Sbjct: 356 GAVMNVVGQKTLIGDGNITLDLAKNVLKQL 385 >gi|169823698|ref|YP_001691309.1| chromosomal replication initiation protein [Finegoldia magna ATCC 29328] gi|303234453|ref|ZP_07321091.1| chromosomal replication initiator protein DnaA [Finegoldia magna BVS033A4] gi|167830503|dbj|BAG07419.1| chromosomal replication initiation protein [Finegoldia magna ATCC 29328] gi|302494408|gb|EFL54176.1| chromosomal replication initiator protein DnaA [Finegoldia magna BVS033A4] Length = 485 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 34/210 (16%), Positives = 78/210 (37%), Gaps = 27/210 (12%) Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDK-----SRSTRFSNIAKSLDSILIDTRK----- 109 P+ + + G +G GK+ L + + + ++ ++S + LI + Sbjct: 174 PATAYNPLFIHGKAGLGKTHLMHAIAHEILKNNPKARVIYTTSESFTNELISSIGDKSTK 233 Query: 110 -------------PVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 +L++DI + + FH N ++ ++ +++++ P Sbjct: 234 KNSQFRQKYRNIDVLLIDDIQFIAGKQGTQEEFFHTFNELYNHNKQIILSSDRPPKEIKT 293 Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213 L SR + + I PD + ++ + + ++ YI ++ ++ E Sbjct: 294 LEERLVSRFEWGLMADIQPPDYETRVAIVNEYLDRNNTSLPPEIIDYIAMNVKSNIRELE 353 Query: 214 KLV-DKMDNLALSRGMGITRSLAAEVLKET 242 V + + L IT LA VLK+ Sbjct: 354 GAVMNVVGQKTLIGDGNITLDLAKNVLKQL 383 >gi|83309735|ref|YP_419999.1| chromosomal replication initiation protein [Magnetospirillum magneticum AMB-1] gi|82944576|dbj|BAE49440.1| ATPase [Magnetospirillum magneticum AMB-1] Length = 477 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 34/239 (14%), Positives = 79/239 (33%), Gaps = 26/239 (10%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSR 89 P + + +V E A + L G G GK+ L + + R Sbjct: 141 PLDNRFTFKNFVVGKPNEFAWAAARRVAEADQVSFNPLFLYGGVGLGKTHLMHAIAHHIR 200 Query: 90 ST----------------RFSNIAKSLDSILIDTR----KPVLLEDIDLLDFND---TQL 126 RF + D++ + ++++D+ + D + Sbjct: 201 ERNPERSVLYLSAEKFMYRFIRALRGQDTMSFKEQFRSVDVLMIDDVQFIAGKDATQEEF 260 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH N++ ++++A P L SR+ V I + ++ Sbjct: 261 FHTFNALVDQGRQIVISADKSPSDLEGIEERLRSRMACGLVADIHATTYELRLGILHSKA 320 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 + + +K+ ++ ++ ++ E ++++ + G IT EVL + + Sbjct: 321 EQMGVLVPQKVMEFLAHKIISNVRELEGALNRVVAHSQLVGRAITLETTQEVLHDLLRA 379 >gi|254507297|ref|ZP_05119433.1| chromosomal replication initiator protein DnaA [Vibrio parahaemolyticus 16] gi|219549757|gb|EED26746.1| chromosomal replication initiator protein DnaA [Vibrio parahaemolyticus 16] Length = 278 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 62/139 (44%), Gaps = 3/139 (2%) Query: 107 TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 + +L++DI + + FH N++ + + +++T+ +P L SR Sbjct: 39 SVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFG 98 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 V I P+ + +++K D QI + ++A +I +R+ ++ E ++++ A Sbjct: 99 WGLTVAIEPPELETRVAILMKKAEDHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANA 158 Query: 224 LSRGMGITRSLAAEVLKET 242 G IT E L++ Sbjct: 159 NFTGRPITIDFVREALRDL 177 >gi|294505817|ref|YP_003569875.1| Chromosomal replication initiator protein dnaA [Salinibacter ruber M8] gi|294342145|emb|CBH22923.1| Chromosomal replication initiator protein dnaA [Salinibacter ruber M8] Length = 524 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 45/266 (16%), Positives = 93/266 (34%), Gaps = 37/266 (13%) Query: 16 QKNDQPKNKEEQLFFSFP----------RCLGISRDDLLVHSAIEQAVRL---IDSWPSW 62 + D+ Q F+ P + D + A I + P Sbjct: 157 AEGDEKSAPPVQNPFAIPGLKNAEVDNQLNDSYTFDRFIEGECNRLARSAAHSIATDPGE 216 Query: 63 PS-RVVILVGPSGSGKSCLA-----NIWSDKSRSTRFSNIAKSLDSILIDTR-------- 108 S ++ G G GK+ L ++ + + T F ++ + + + Sbjct: 217 TSFNPFLVYGGVGLGKTHLIQAIGNHVAARDASKTVFYVSSERFTTEFVQSIQENQIGEF 276 Query: 109 -------KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158 ++++D+ + + FHI N++ Q + ++++A P L Sbjct: 277 STFYRQVDVLIVDDVQFFGGKEKTQEEFFHIFNALRQAGNQIVLSADRPPREIDGLEERL 336 Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218 SR + + P D ++ + D I +D + +I Q +E ++ E + + Sbjct: 337 LSRFQWGLSADLKPPGLDTRISILRRKAEDDGIDLDDDVVEFIAQSIESNIRELEGALIR 396 Query: 219 MDNLALSRGMGITRSLAAEVLKETQQ 244 + A + IT LA EVL + Q Sbjct: 397 LLAHATLHQLDITLDLAKEVLHDLFQ 422 >gi|290959004|ref|YP_003490186.1| chromosomal replication initiator protein [Streptomyces scabiei 87.22] gi|260648530|emb|CBG71641.1| chromosomal replication initiator protein [Streptomyces scabiei 87.22] Length = 674 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 88/235 (37%), Gaps = 28/235 (11%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90 D ++ ++ A + P+ + + G SG GK+ L + +RS Sbjct: 336 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSL 395 Query: 91 -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128 R+ + + + + R +L++DI L + + FH Sbjct: 396 YPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFH 455 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 N++H + +++++ P V L D L +R + + + P+ + ++ K Sbjct: 456 TFNTLHNANKQIVLSSDRPPKQL-VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 514 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 Q+ ++ +I R+ R++ E + ++ A + L VLK+ Sbjct: 515 QEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDL 569 >gi|291438517|ref|ZP_06577907.1| chromosomal replication initiator protein [Streptomyces ghanaensis ATCC 14672] gi|291341412|gb|EFE68368.1| chromosomal replication initiator protein [Streptomyces ghanaensis ATCC 14672] Length = 648 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 88/235 (37%), Gaps = 28/235 (11%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90 D ++ ++ A + P+ + + G SG GK+ L + +RS Sbjct: 310 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSL 369 Query: 91 -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128 R+ + + + + R +L++DI L + + FH Sbjct: 370 YPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFH 429 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 N++H + +++++ P V L D L +R + + + P+ + ++ K Sbjct: 430 TFNTLHNANKQIVLSSDRPPKQL-VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 488 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 Q+ ++ +I R+ R++ E + ++ A + L VLK+ Sbjct: 489 QEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDL 543 >gi|227498788|ref|ZP_03928928.1| chromosomal replication initiator protein [Acidaminococcus sp. D21] gi|226904240|gb|EEH90158.1| chromosomal replication initiator protein [Acidaminococcus sp. D21] Length = 458 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 47/265 (17%), Positives = 91/265 (34%), Gaps = 33/265 (12%) Query: 7 DYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV 66 + P ++ PK Q FS ++ ++ ++ A + P++V Sbjct: 96 GHGAAAPKAKEPLIPKKGPRQ-DFSSNLSPKYVFENFVIGNSNRFAHAASKAVAEAPAKV 154 Query: 67 ---VILVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDTR---------- 108 + L SG GK+ L N I D +++ + LI++ Sbjct: 155 YNPLFLYSDSGLGKTHLMNAIGNKIHQDHPEMKILYTSSETFTNELINSIQNNATEAFRN 214 Query: 109 -----KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 +L++DI L + + FH ++++ + +++++ P L S Sbjct: 215 KYRNIDVLLIDDIQFLRKKESTQEEFFHTFETLYKAEKQIIISSDRKPSELDTLEERLKS 274 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---RSLVFAEKLVD 217 R + I PD + ++ M I + + I + R L A V Sbjct: 275 RFTWGLIADIQPPDLETRIAILKNMALKDHISVPDSVTNLIASNISTNIRELEGAYTKVR 334 Query: 218 KMDNLALSRGMGITRSLAAEVLKET 242 + IT LA E LK+ Sbjct: 335 AYSQFS---NEPITEELAIEALKDL 356 >gi|89892747|ref|YP_516234.1| ATPase involved in DNA replication initiation [Desulfitobacterium hafniense Y51] gi|219666072|ref|YP_002456507.1| chromosomal replication initiator protein DnaA [Desulfitobacterium hafniense DCB-2] gi|89332195|dbj|BAE81790.1| ATPase involved in DNA replication initiation [Desulfitobacterium hafniense Y51] gi|219536332|gb|ACL18071.1| chromosomal replication initiator protein DnaA [Desulfitobacterium hafniense DCB-2] Length = 449 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 49/266 (18%), Positives = 98/266 (36%), Gaps = 28/266 (10%) Query: 3 LMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE---QAVRLIDSW 59 L+ + P +N N + + + + D ++ ++ A + Sbjct: 81 LVTSIHETTQPGDNQNKASSNSKAEPADNKTLNSKYTFDTFVIGNSNRFAHAAALAVAES 140 Query: 60 PSWPSRVVILVGPSGSGKSCLANIWS----DKSRSTRF----------SNIAKSLDSILI 105 P+ + + G G GK+ L + +S STR I D I Sbjct: 141 PALAYNPLFIYGGVGLGKTHLMHAIGNAVIQRSPSTRVLYVSSEKFTNELIESIRDQNPI 200 Query: 106 DTRKP------VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156 + R +L++DI L + + FH N++H + +++++ P Sbjct: 201 EFRNHYRNVDILLIDDIQFLAGKEGTQEEFFHTFNALHDANKQIIISSDRPPKEIPTLED 260 Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE-KL 215 L SR + + I PD + ++ K + + ++ YI ++ ++ E L Sbjct: 261 RLRSRFEWGLITDIQPPDLETRIAILRKKAKLENLQVANEVMVYIADKIHSNIRELEGAL 320 Query: 216 VDKMDNLALSRGMGITRSLAAEVLKE 241 + M +L+ IT AAE LK+ Sbjct: 321 IRVMAVGSLTS-NPITVETAAEALKD 345 >gi|254451709|ref|ZP_05065146.1| chromosomal replication initiator protein DnaA [Octadecabacter antarcticus 238] gi|198266115|gb|EDY90385.1| chromosomal replication initiator protein DnaA [Octadecabacter antarcticus 238] Length = 454 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 36/242 (14%), Positives = 81/242 (33%), Gaps = 31/242 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRST 91 + D +V E A + L G G GK+ L + + + Sbjct: 115 DQRFTFDSFVVGKPNELAHAASKRVAEGGPVTFNPLFLYGGVGLGKTHLMHAIAHELGER 174 Query: 92 R--FSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFH 128 R + + S D + + +++DI L+ + + FH Sbjct: 175 RPDLNVLYVSADQFIYRFISALRDRKMMDFKQHFRSVDVLMVDDIQFLEGKESTQEEFFH 234 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++ ++++A P + SRL+ VV + D + ++ Sbjct: 235 TYNALADQGKQMIISADRAPGEIRDLSERIKSRLQCGLVVDLHPTDYELRLGILHAKQEM 294 Query: 189 -----RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 + I + ++ R+ ++ E ++++ LA G +T +A + L + Sbjct: 295 FVNVYPGVEIATGVLEFLAHRISSNVRVLEGALNRLYALASMVGRTVTVEMAQDCLSDIL 354 Query: 244 QC 245 + Sbjct: 355 RA 356 >gi|111020655|ref|YP_703627.1| chromosomal replication initiation protein [Rhodococcus jostii RHA1] gi|123144805|sp|Q0SAG7|DNAA_RHOSR RecName: Full=Chromosomal replication initiator protein DnaA gi|110820185|gb|ABG95469.1| DNA-directed DNA replication initiator protein [Rhodococcus jostii RHA1] Length = 528 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 36/236 (15%), Positives = 86/236 (36%), Gaps = 28/236 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91 + D ++ S+ A + P+R + + G SG GK+ L + + Sbjct: 190 NAKYTFDTFVIGSSNRFAHAAAVAIAEAPARAYNPLFVWGASGLGKTHLLHA-AGHYAQR 248 Query: 92 RFSNI---AKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLF 127 F + S + D + L++DI ++ + + F Sbjct: 249 LFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRRYRETDVLLVDDIQFIEGKEGIQEEFF 308 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++H + +++++ P L +R + + + P+ + ++ K Sbjct: 309 HTFNTLHNANKQIVVSSDRPPKQLATLEERLRTRFEWGLITDVQPPELETRIAILSKKAR 368 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 ++ + + I R+ER++ E + ++ A + +LA VL++ Sbjct: 369 MDRLEVPDDVLELIASRIERNIRELEGALIRVTAFASLNRQPLDLTLAEVVLRDLM 424 >gi|153854255|ref|ZP_01995554.1| hypothetical protein DORLON_01548 [Dorea longicatena DSM 13814] gi|149753030|gb|EDM62961.1| hypothetical protein DORLON_01548 [Dorea longicatena DSM 13814] Length = 462 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 42/249 (16%), Positives = 82/249 (32%), Gaps = 37/249 (14%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSD----- 86 + D +V A + P + L G G GK+ L + + Sbjct: 115 NPKYTFDTFVVGGNNNFAHAASLAVAESPGEVYNPLFLYGGVGLGKTHLMHSIAHFILDK 174 Query: 87 ----------------------KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND- 123 K+ T + A S +L++DI + + Sbjct: 175 NPKKKVLYVTSETFTNELIEALKNGKTAGNESAMSKFRDKYRNNDVLLIDDIQFIIGKES 234 Query: 124 --TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 + FH N +H +++++ P L +R + + IS P+ + + Sbjct: 235 TQEEFFHTFNHLHTSGKQIIISSDKPPKDIETLEARLRTRFEWGLIADISSPNYETRMAI 294 Query: 182 IVKMFADRQIF---IDKKLAAYIVQRMERSLVFAEKLVDKMDN-LALSRGMGITRSLAAE 237 + K + I + YI ++ ++ E ++K+ L+ I +LAAE Sbjct: 295 LQKKIELDHLEKYNIPNDVLEYIATNVKTNIRELEGSLNKLIALYKLNNTGSIDIALAAE 354 Query: 238 VLKETQQCD 246 LK+ D Sbjct: 355 ALKDIISSD 363 >gi|119485656|ref|ZP_01619931.1| chromosomal replication initiation protein [Lyngbya sp. PCC 8106] gi|119456981|gb|EAW38108.1| chromosomal replication initiation protein [Lyngbya sp. PCC 8106] Length = 452 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 46/259 (17%), Positives = 86/259 (33%), Gaps = 37/259 (14%) Query: 13 PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VIL 69 P Q+ P + SR +V + A + P R + L Sbjct: 104 PSNQRLKPP---------NLNSKYVFSR--FVVGANSRLAHAAALAVAESPGREFNPLFL 152 Query: 70 VGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTRKP-- 110 G G GK+ L ++K + + I K D + Sbjct: 153 CGGVGLGKTHLMQAIGHYRIEINPDAKVFYVSTEKFTNDLIAAIRKDSMQSFRDHYRAAD 212 Query: 111 -VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 +L++DI ++ + + FH N++H+ +++ + P LCSR Sbjct: 213 VLLVDDIQFIEGKEYTQEEFFHTFNTLHEAGKQVVLASDRPPNQIPRLQERLCSRFSMGL 272 Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 V I PD + ++ K + + + + YI R ++ E + + Sbjct: 273 VADIQPPDLETRMAILQKKAEYENVRLSEGVVEYIASRYTSNIRELEGALIRAVAYTSIS 332 Query: 227 GMGITRSLAAEVLKETQQC 245 G+ +T A VL +Q Sbjct: 333 GLPMTVESIAPVLSPAEQP 351 >gi|103485499|ref|YP_615060.1| chromosomal replication initiation protein [Sphingopyxis alaskensis RB2256] gi|122984662|sp|Q1GN68|DNAA_SPHAL RecName: Full=Chromosomal replication initiator protein DnaA gi|98975576|gb|ABF51727.1| chromosomal replication initiator protein DnaA [Sphingopyxis alaskensis RB2256] Length = 453 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 45/250 (18%), Positives = 89/250 (35%), Gaps = 45/250 (18%) Query: 32 FPRCLGISRDDLLVHSAI------EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 +S D +V + + + +++ P + L +G GK+ L + Sbjct: 115 LGFDPRLSFDRFVVARSNILAANAARRMAMVERPQFNP---LYLCSGTGQGKTHLLQAIA 171 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---------------------- 123 + A +I++ + + +LE + + D Sbjct: 172 QDYAA------AHPTATIILMSAEKFMLEFVGAMRGGDMMAFKARLRAADLLLLDDLQFV 225 Query: 124 -------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 +L H I+ + L++TA P L SRL V I P+DD Sbjct: 226 IGKNSTQEELLHTIDDLMTAGKRLVVTADRPPAMLDGVEARLLSRLSGGLVADIEAPEDD 285 Query: 177 FLEKVIV-KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235 E++I ++ A + + + A++V+ R++ E ++K+ A G I LA Sbjct: 286 LRERIIRQRLAAMPMVEVPDDVIAWLVKHFTRNIRELEGALNKLLAYAALTGARIDLMLA 345 Query: 236 AEVLKETQQC 245 + L E + Sbjct: 346 EDRLAENVRS 355 >gi|296127870|ref|YP_003635120.1| chromosomal replication initiator protein DnaA [Cellulomonas flavigena DSM 20109] gi|296019685|gb|ADG72921.1| chromosomal replication initiator protein DnaA [Cellulomonas flavigena DSM 20109] Length = 534 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 42/255 (16%), Positives = 90/255 (35%), Gaps = 27/255 (10%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILV 70 D D P + L + ++ S+ A + P+ + + Sbjct: 175 DGSSYDAPAPR-RGLSEPARLNPKYRFETFVIGSSNRFAHAAAVAVAEAPAKAYNPLFIY 233 Query: 71 GPSGSGKSCLANIWSDKSRS------TRFSNIAKSLDSILIDTRKP-------------- 110 G SG GK+ L + +++ R+ N + + + + Sbjct: 234 GDSGLGKTHLLHAIGHYAQNLYPTVRVRYVNSEEFTNDFINSIGEGKAGAFQRRYREVDV 293 Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 +L++DI L + + FH N++H +++T+ P + SR + + Sbjct: 294 LLIDDIQFLQGKEQTMEEFFHTFNTLHNASKQVVITSDVPPKQLNGFEDRMRSRFEWGLI 353 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 + PD + ++ K A ++ + YI R+ ++ E + ++ A Sbjct: 354 TDVQPPDLETRIAILRKKAASERLQAPDDVLEYIASRISTNIRELEGALIRVTAFANLNR 413 Query: 228 MGITRSLAAEVLKET 242 + SLA VLK+ Sbjct: 414 QLVDVSLAEIVLKDL 428 >gi|81251072|gb|ABB69875.1| DNA replication initiator protein [Nitrosospira sp. NRS527] Length = 475 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 35/257 (13%), Positives = 88/257 (34%), Gaps = 33/257 (12%) Query: 12 VPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVI 68 + + KN + ++ + A + A + P Sbjct: 125 FAMDAREKREKNPSR-------LNPSFTFNNFVTGKANQLARAGAIQVAERPGTAYNPFF 177 Query: 69 LVGPSGSGKSCLANIW------SDKSRSTRFSNIAKSLDSILID--------------TR 108 + G G GK+ L + + R+ + + + ++ + Sbjct: 178 IYGGVGLGKTHLIQAIGNFVLEHNSTAKVRYIHSEQYVSDVVRAYQHKAFDDFKRYYHSL 237 Query: 109 KPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 +L++DI + F+ N++ + +++T ++P L SR Sbjct: 238 DVLLIDDIQFFGGKNRTQEEFFYAFNALIEAHRQVIITCDSYPKEISGMEERLISRFGWG 297 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 V + P+ + +++K I +D+ +A +I + + ++ E + ++ + Sbjct: 298 LTVAVEPPELEMRVAILLKKALMENIVLDENVAFFIAKHIRSNVRELEGALKRVLAYSRF 357 Query: 226 RGMGITRSLAAEVLKET 242 G ++ LA E LK+ Sbjct: 358 TGHSLSLDLAREALKDL 374 >gi|126734082|ref|ZP_01749829.1| chromosomal replication initiation protein [Roseobacter sp. CCS2] gi|126716948|gb|EBA13812.1| chromosomal replication initiation protein [Roseobacter sp. CCS2] Length = 445 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 38/244 (15%), Positives = 80/244 (32%), Gaps = 31/244 (12%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSD--K 87 P + D +V E A + L G G GK+ L + + K Sbjct: 104 PLDNRFTFDTFVVGKPNELAHAAARRVAEGGPVTFNPLFLYGGVGLGKTHLMHAIAHELK 163 Query: 88 SRSTRFSNIAKSLDSI------------------LIDTRKPVLLEDIDLLDFND---TQL 126 RS + + S + L + ++++D+ + D + Sbjct: 164 ERSPELNVLYLSAEQFMYRFITALRERKMMDFKQLFRSVDVLMVDDVQFIGGKDSTQEEF 223 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH N++ ++++A P + SRL+ VV + D + ++ Sbjct: 224 FHTFNALVDGQKQIIISADRAPGEIKDLEERIKSRLQCGLVVDLHPTDYELRLGILQSKV 283 Query: 187 ADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I + ++ R+ ++ E + ++ A G IT L + L + Sbjct: 284 DVYSAQYPELVIADGVLEFLAHRISTNVRVLEGALTRLFAFASLVGREITLELTQDCLSD 343 Query: 242 TQQC 245 + Sbjct: 344 VLKA 347 >gi|114762142|ref|ZP_01441610.1| chromosomal replication initiation protein [Pelagibaca bermudensis HTCC2601] gi|114545166|gb|EAU48169.1| chromosomal replication initiation protein [Roseovarius sp. HTCC2601] Length = 451 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 36/244 (14%), Positives = 84/244 (34%), Gaps = 31/244 (12%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANI--WSDK 87 P + D +V E A + L G G GK+ L + W + Sbjct: 110 PLDGRFTFDSFVVGKPNELAHAAAKRVAEGGQVTFNPLFLYGGVGLGKTHLMHAIAWDLR 169 Query: 88 SRSTRFSNIAKSLDS------------------ILIDTRKPVLLEDIDLLDFND---TQL 126 + + + S + L + ++++D+ + D + Sbjct: 170 NNRPDLNVLYLSAEQFMYRFVQALRERRMMDFKELFRSVDVLMVDDVQFIAGKDSTQEEF 229 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH N++ + ++++A P + SRL++ VV + D + ++ Sbjct: 230 FHTFNALVDQNKQIIISADRAPDEIKDLENRIRSRLQSGLVVDLHPTDYELRLGILQSKV 289 Query: 187 ADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + + + +D + ++ R+ ++ E + ++ A G IT L + L + Sbjct: 290 QNYREQYPALQLDDGILEFLAHRISTNVRVLEGALTRLFAFASLVGQPITMELTQDCLAD 349 Query: 242 TQQC 245 + Sbjct: 350 VLRA 353 >gi|325961451|ref|YP_004239357.1| chromosomal replication initiator protein DnaA [Arthrobacter phenanthrenivorans Sphe3] gi|323467538|gb|ADX71223.1| chromosomal replication initiator protein DnaA [Arthrobacter phenanthrenivorans Sphe3] Length = 474 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 47/259 (18%), Positives = 91/259 (35%), Gaps = 27/259 (10%) Query: 11 FVPDKQKNDQPKNKEEQLFFSFPR-CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRV 66 F PD+ +P+ F R D ++ S+ A + P+ Sbjct: 109 FSPDQLIEQKPQPMLPSTSHEFGRLNPKYVFDTFVIGSSNRFAHAAAVAVAEAPAKAYNP 168 Query: 67 VILVGPSGSGKSCLANIWSDKSRS------TRFSNIAKSLDSILIDTRK----------- 109 + + G SG GK+ L + +R R+ N + + + R Sbjct: 169 LFIYGDSGLGKTHLLHAIGHYARRLYSGIRVRYVNSEEFTNDFINSIRDDEGASFKTTYR 228 Query: 110 ---PVLLEDIDLLDFNDTQL---FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 +L++DI L D L FH NS+H + +++T+ P + SR + Sbjct: 229 NVDVLLIDDIQFLAGKDRTLEEFFHTFNSLHNNNKQVVITSDQPPKLLAGFEDRMKSRFE 288 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + I P+ + ++ K + YI ++ ++ E + ++ A Sbjct: 289 WGLLTDIQPPELETRIAILRKKALSEGLSAPDDALEYIASKISSNIRELEGALIRVTAFA 348 Query: 224 LSRGMGITRSLAAEVLKET 242 + +LA VLK+ Sbjct: 349 SLNRQPVDVALAEMVLKDL 367 >gi|256389233|ref|YP_003110797.1| chromosomal replication initiator protein DnaA [Catenulispora acidiphila DSM 44928] gi|256355459|gb|ACU68956.1| chromosomal replication initiator protein DnaA [Catenulispora acidiphila DSM 44928] Length = 570 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 36/256 (14%), Positives = 88/256 (34%), Gaps = 32/256 (12%) Query: 16 QKNDQPKN--KEEQLFFSFPRCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILV 70 ++ P + K +Q + + ++ S+ A + P+ + + Sbjct: 216 ARSSTPDDGAKAQQAKLN----EKYVFETFVIGSSNRFAHAAAVAVAEAPAKAYNPLFIY 271 Query: 71 GPSGSGKSCLANIWSDKSRST--------------------RFSNIAKSLDSILIDTRKP 110 G SG GK+ L + +R+ + A + Sbjct: 272 GDSGLGKTHLLHAIGHYARNLYPGTRVRYVSTEEFTNDFINAIRDGAGNHLRKRYRDVDI 331 Query: 111 VLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 ++++DI + + + FH N++H +++++ P L SR + + Sbjct: 332 LMVDDIQFLENKEGTQEEFFHTFNTLHNASKQIVISSDRPPKQLNTLEDRLRSRFEWGLI 391 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 I P+ + ++ K + ++ +I ++ ++ E + ++ A Sbjct: 392 TDIQPPELETRIAILRKKAQQEGLNAPPEVLEFIASKISTNIRELEGALIRVTAFASLNR 451 Query: 228 MGITRSLAAEVLKETQ 243 + SLA +VLK Sbjct: 452 APVDLSLAEDVLKNLM 467 >gi|297158791|gb|ADI08503.1| chromosomal replication initiation protein [Streptomyces bingchenggensis BCW-1] Length = 618 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 88/235 (37%), Gaps = 28/235 (11%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90 D ++ ++ A + P+ + + G SG GK+ L + +RS Sbjct: 280 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSL 339 Query: 91 -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128 R+ + + + + R +L++DI L + + FH Sbjct: 340 YPGTRVRYVSSEEFTNEFINSIRDGKADAFRKRYRDMDILLVDDIQFLASKESTQEEFFH 399 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 N++H + +++++ P V L D L +R + + + P+ + ++ K Sbjct: 400 TFNTLHNANKQIVLSSDRPPKQL-VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 458 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 Q+ ++ +I R+ R++ E + ++ A + L VLK+ Sbjct: 459 QEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDL 513 >gi|86604734|ref|YP_473497.1| chromosomal replication initiation protein [Synechococcus sp. JA-3-3Ab] gi|123724517|sp|Q2JQW9|DNAA_SYNJA RecName: Full=Chromosomal replication initiator protein DnaA gi|86553276|gb|ABC98234.1| chromosomal replication initiator protein DnaA [Synechococcus sp. JA-3-3Ab] Length = 467 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 77/237 (32%), Gaps = 26/237 (10%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW-----SD 86 S +V A + P R + L G G GK+ L Sbjct: 128 NPKYSFSRFVVGPNNRMAHAAALAVADKPGRAYNPLFLCGGVGLGKTHLMQAIGHYQLEA 187 Query: 87 KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 R+ F + + LID + +L++DI ++ + + FH Sbjct: 188 NPRAKVFYVSTERFTNDLIDAIRRDSMQSFREHYRDVDILLVDDIQFIEGKEYTQEEFFH 247 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H+ +++ A P LCSR + +I PD + ++ K Sbjct: 248 TFNTLHESGKQIVLAADRSPHLIPRLQERLCSRFSMGLIAEIQPPDIETRMAILKKKAEY 307 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 + + ++ YI ++ E + + G+ ++ +L + Sbjct: 308 EGMILPPEVIEYIATTYTSNIRELEGALIRAVAYVSISGLPMSVETIQPILNPPSEP 364 >gi|317182731|dbj|BAJ60515.1| chromosomal replication initiation protein [Helicobacter pylori F57] Length = 455 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 84/235 (35%), Gaps = 24/235 (10%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS 90 + ++ +V S + P V+ G +G GK+ + N + + Sbjct: 108 VKDSYTFENFVVGSCNNTVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALE 167 Query: 91 TRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFN---DTQLFHI 129 + + + L D K + LL+D L + + FH Sbjct: 168 KHKKVVLVTSEDFLTDFLKHLDNKTMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEFFHT 227 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N +H +++ + P + L SR + K+ PD + ++ + Sbjct: 228 FNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKCQLN 287 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 +I + +++ YI Q + ++ E + K+ A I +LA VL++ Q+ Sbjct: 288 KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNASLMNATIDLNLAKTVLEDLQK 342 >gi|315585910|gb|ADU40291.1| DNA-directed DNA replication initiator protein [Helicobacter pylori 35A] Length = 455 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 84/235 (35%), Gaps = 24/235 (10%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS 90 + ++ +V S + P V+ G +G GK+ + N + + Sbjct: 108 VKDSYTFENFVVGSCNNTVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALE 167 Query: 91 TRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFN---DTQLFHI 129 + + + L D K + LL+D L + + FH Sbjct: 168 KHKKVVLVTSEDFLTDFLKHLDNKTMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEFFHT 227 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N +H +++ + P + L SR + K+ PD + ++ + Sbjct: 228 FNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKCQLN 287 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 +I + +++ YI Q + ++ E + K+ A I +LA VL++ Q+ Sbjct: 288 KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNASLMNATIDLNLAKTVLEDLQK 342 >gi|289642466|ref|ZP_06474611.1| chromosomal replication initiator protein DnaA [Frankia symbiont of Datisca glomerata] gi|289507725|gb|EFD28679.1| chromosomal replication initiator protein DnaA [Frankia symbiont of Datisca glomerata] Length = 500 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 43/262 (16%), Positives = 95/262 (36%), Gaps = 31/262 (11%) Query: 7 DYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQA---VRLIDSWPSWP 63 D + P ++ P++ E + ++ + + P+ Sbjct: 137 DTARITPGLGRDPAPRSYE-----PTRLNPRYVFETFVIGDSNRFPHAAAVAVAEAPAKA 191 Query: 64 SRVVILVGPSGSGKSCLANIWSD-------KSRSTRFSNIAKSLDSILI----------- 105 + + G SG GK+ L + +SR S+ + D I Sbjct: 192 YNPLFIYGDSGLGKTHLLHAIGHYTLKLYPESRVKYVSSEEFTNDFINSIRDDRQQAFQR 251 Query: 106 --DTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 +L++DI L+ + + FH N +H + +++++ P L S Sbjct: 252 RYRDTDVLLVDDIQFLENKERTQEEFFHTFNVLHDTEKQIVISSDRSPKQLSALEDRLRS 311 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 R + + ++ PD + ++ K A ++ + + YI +ER++ E + ++ Sbjct: 312 RFEWGLITDVTPPDLETRIAILSKKAATERLPVPGDVLEYIATHIERNIRELEGALIRVA 371 Query: 221 NLALSRGMGITRSLAAEVLKET 242 A + R+LA VL++ Sbjct: 372 AFASLNKSHVDRTLAEIVLRDL 393 >gi|209523410|ref|ZP_03271965.1| chromosomal replication initiator protein DnaA [Arthrospira maxima CS-328] gi|209496152|gb|EDZ96452.1| chromosomal replication initiator protein DnaA [Arthrospira maxima CS-328] Length = 453 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 37/212 (17%), Positives = 70/212 (33%), Gaps = 30/212 (14%) Query: 43 LLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW--------------- 84 +V S A + P R + L G G GK+ L Sbjct: 126 FVVGSGSRLAHAASLAVAESPGREFNPLFLCGGVGLGKTHLMQAIGHYRLEINPYARVFY 185 Query: 85 --SDKSRSTRFSNIAKSLDSILIDTRKP---VLLEDIDLLDFND---TQLFHIINSIHQY 136 ++K + + I + D + +L++DI ++ + + FH N++H+ Sbjct: 186 VSTEKFTNDLIAAIRRDSMQSFRDHYRAADVLLVDDIQFIEGKEYTQEEFFHTFNTLHEA 245 Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196 +++ + P LCSR V I PD + ++ K + + Sbjct: 246 GKQIVLASDRPPSKISGLQDRLCSRFSMGLVADIQPPDLETRMAILQKKAEYENMRLPPA 305 Query: 197 LAAYIVQRME---RSLV-FAEKLVDKMDNLAL 224 + YI R L + V + +L Sbjct: 306 VIEYIATNYTSNIRELEGALIRAVAYISISSL 337 >gi|297588057|ref|ZP_06946701.1| ATPase [Finegoldia magna ATCC 53516] gi|297574746|gb|EFH93466.1| ATPase [Finegoldia magna ATCC 53516] Length = 481 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 35/210 (16%), Positives = 78/210 (37%), Gaps = 27/210 (12%) Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDK-----SRSTRFSNIAKSLDSILIDTRK----- 109 P+ + + G +G GK+ L + + + ++ ++S + LI + Sbjct: 170 PATAYNPLFIHGKAGLGKTHLMHAIAHEILKNNPKARVIYTTSESFTNELISSIGDKSTK 229 Query: 110 -------------PVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 +L++DI + + FH N ++ ++ +++++ P Sbjct: 230 KNSQFRQKYRNIDVLLIDDIQFIAGKQGTQEEFFHTFNELYNHNKQIILSSDRPPKEIKT 289 Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213 L SR + + I PD + +I + + ++ YI ++ ++ E Sbjct: 290 LEERLVSRFEWGLMADIQPPDYETRVAIINEYLDRNNTSLTPEIIDYIAMNVKSNIRELE 349 Query: 214 KLV-DKMDNLALSRGMGITRSLAAEVLKET 242 V + + L IT LA VLK+ Sbjct: 350 GAVMNVVGQKTLIGDGNITLDLAKNVLKQL 379 >gi|86738725|ref|YP_479125.1| chromosomal replication initiator protein DnaA [Frankia sp. CcI3] gi|86565587|gb|ABD09396.1| chromosomal replication initiator protein DnaA [Frankia sp. CcI3] Length = 562 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 40/253 (15%), Positives = 89/253 (35%), Gaps = 30/253 (11%) Query: 16 QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP---SRVVILVGP 72 + + + Q + + ++ + + P + + G Sbjct: 207 RDAAPHETEPAQARLN----PRYIFETFVIGDSNRFPHAAAVAVAEAPAKAYNPLFIYGD 262 Query: 73 SGSGKSCLANIWSDKS-------RSTRFSNIAKSLDSILI-------------DTRKPVL 112 SG GK+ L + + R S+ + D I +L Sbjct: 263 SGLGKTHLLHAIGHYALKLYPNMRVKYVSSEEFTNDFINSIRDDRQQAFQRRYRDIDVLL 322 Query: 113 LEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 ++DI L+ + + FH N +H + +++++ P L SR + + Sbjct: 323 VDDIQFLENKERTQEEFFHTFNVLHDGEKQIVISSDRSPKQLSALEDRLRSRFEWGLMTD 382 Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229 I+ PD + ++ K A ++ + + YI +ER++ E + ++ A Sbjct: 383 ITPPDLETRIAILSKKAATERLPVPPDVLEYIATHIERNIRELEGALIRVAAFASLNKSH 442 Query: 230 ITRSLAAEVLKET 242 + R+LA VL++ Sbjct: 443 VDRTLAEIVLRDL 455 >gi|297193296|ref|ZP_06910694.1| chromosomal replication initiator protein dnaA [Streptomyces pristinaespiralis ATCC 25486] gi|297151727|gb|EDY62296.2| chromosomal replication initiator protein dnaA [Streptomyces pristinaespiralis ATCC 25486] Length = 611 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 36/234 (15%), Positives = 84/234 (35%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90 D ++ ++ A + P+ + + G SG GK+ L + +RS Sbjct: 273 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSL 332 Query: 91 -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128 R+ + + + + R +L++DI L + + FH Sbjct: 333 YPGTRVRYVSSEEFTNEFINSIRDGKGDTFRKRYRDVDILLVDDIQFLASKESTQEEFFH 392 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H + +++++ P L +R + + P+ + ++ K Sbjct: 393 TFNTLHNANKQIVLSSDRPPKQLMTLEDRLRNRFEWGLTTDVQPPELETRIAILRKKAVQ 452 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 Q+ ++ +I R+ R++ E + ++ A + L VLK+ Sbjct: 453 EQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDL 506 >gi|323357956|ref|YP_004224352.1| ATPase [Microbacterium testaceum StLB037] gi|323274327|dbj|BAJ74472.1| ATPase [Microbacterium testaceum StLB037] Length = 471 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 85/233 (36%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91 + D+ ++ + A + P+ + + G SG GK+ L + D + S Sbjct: 134 NPKYTFDNFVIGQSNRFAHAAAVAVAEAPAKAYNPLFIYGDSGLGKTHLLHAIGDYAASM 193 Query: 92 R-----------------FSNIAKSLDSILIDTRKPV---LLEDIDLLDFN---DTQLFH 128 ++IA + S + V L++DI L FH Sbjct: 194 YAGIRVRYVSSEEFTNDFINSIANNRGSAFQARYRDVDILLIDDIQFLQGRAETQEAFFH 253 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H +D +++T+ P + SR + + + PD + ++ K Sbjct: 254 TFNTLHDHDKQVVITSDLPPKQLTGFEDRMRSRFEWGLITDVQAPDLETRIAILRKKAQS 313 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++ I + YI + ++ E + ++ A + SLA VL++ Sbjct: 314 ERLLIPDDVLEYIATVVSSNIRELEGALIRVSAFASLNRSTLDMSLAQTVLRD 366 >gi|228476806|ref|ZP_04061454.1| chromosomal replication initiator protein DnaA [Streptococcus salivarius SK126] gi|228251543|gb|EEK10680.1| chromosomal replication initiator protein DnaA [Streptococcus salivarius SK126] Length = 454 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 43/257 (16%), Positives = 84/257 (32%), Gaps = 33/257 (12%) Query: 17 KNDQPKNKEEQLF----FSFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVIL 69 ND KE+Q + D+ + +V + P + + Sbjct: 94 NNDFGNKKEQQTPALPTLDSDLNSKYTFDNFIQGDENRWSVAASLAVADSPGATYNPLFI 153 Query: 70 VGPSGSGKSCLANIWSDKS------------------RSTRFSNIAKSLDSILIDTR--K 109 G G GK+ L N +K +D + + R Sbjct: 154 YGGPGLGKTHLLNAIGNKVLHDNPQARIKYITAENFINEFVVHIRLDKMDELKLKYRHLD 213 Query: 110 PVLLEDIDLLD-----FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164 +L++DI L + F+ N +H + +++T+ P L +R K Sbjct: 214 VLLIDDIQSLAKKSTQATQEEFFNTFNVLHNNNKQIVLTSDRNPDQLNEMEERLVTRFKW 273 Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 V I+ PD + ++ D + Y+ + + ++ E + + +A Sbjct: 274 GLTVNITPPDFETRVAILTNKIMDYDYHFPPETIEYLAGQFDSNVRDLEGALKDISLVAN 333 Query: 225 SRG-MGITRSLAAEVLK 240 R IT +AAE ++ Sbjct: 334 VRQLDTITVEVAAEAIR 350 >gi|312864110|ref|ZP_07724345.1| chromosomal replication initiator protein DnaA [Streptococcus vestibularis F0396] gi|322515792|ref|ZP_08068737.1| DNA-directed DNA replication initiator protein [Streptococcus vestibularis ATCC 49124] gi|311100342|gb|EFQ58550.1| chromosomal replication initiator protein DnaA [Streptococcus vestibularis F0396] gi|322125754|gb|EFX97072.1| DNA-directed DNA replication initiator protein [Streptococcus vestibularis ATCC 49124] Length = 454 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 44/262 (16%), Positives = 87/262 (33%), Gaps = 35/262 (13%) Query: 13 PDKQKNDQPKNKEEQLFFSFPR-----CLGISRDDLLVHSAIEQAVRL---IDSWPSWPS 64 P ND +E+Q + P + D+ + +V + P Sbjct: 90 PTLSSNDFSNKREQQTP-ALPTLNSDLNSKYTFDNFIQGDENRWSVAASLAVADSPGATY 148 Query: 65 RVVILVGPSGSGKSCLANIWSDKS------------------RSTRFSNIAKSLDSILID 106 + + G G GK+ L N +K +D + + Sbjct: 149 NPLFIYGGPGLGKTHLLNAIGNKVLHDNPQARIKYITAENFINEFVLHIRLDKMDELKLK 208 Query: 107 TR--KPVLLEDIDLLD-----FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC 159 R +L++DI L + F+ N +H + +++T+ P L Sbjct: 209 YRHLDVLLIDDIQSLAKKSTQATQEEFFNTFNVLHDNNKQIVLTSDRNPDQLNEMEERLV 268 Query: 160 SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 +R K V I+ PD + ++ D + Y+ + + ++ E + + Sbjct: 269 TRFKWGLTVNITPPDFETRVAILTNKIMDYDYHFPPETIEYLAGQFDSNVRDLEGALKDI 328 Query: 220 DNLALSRG-MGITRSLAAEVLK 240 +A R IT +AAE ++ Sbjct: 329 SLVANVRQLDTITVEVAAEAIR 350 >gi|310816811|ref|YP_003964775.1| chromosomal replication initiation protein [Ketogulonicigenium vulgare Y25] gi|308755546|gb|ADO43475.1| chromosomal replication initiation protein [Ketogulonicigenium vulgare Y25] Length = 468 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 33/253 (13%), Positives = 84/253 (33%), Gaps = 37/253 (14%) Query: 24 KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDS-WPSWPSRV--VILVGPSGSGKSCL 80 QL + D +V + E A P + + G G GK+ L Sbjct: 124 PAAQL------DARYTFDRFIVGKSNELAYAAARRVAQGGPVGFNPLFMYGGVGLGKTHL 177 Query: 81 ANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKPVLLEDIDLLD 120 + + + R + L + ++ + ++++D+ + Sbjct: 178 MHAIAHELRRQQPDLNVLYLSAEQFMYRFVSALRDKKALDFKAMLRSVDVLMIDDVQFIA 237 Query: 121 FND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 + + FH N++ +++++ P + SRL+A VV + D Sbjct: 238 GKESTQEEFFHTFNALVDAQKQVIISSDRAPGEIRDINDRISSRLQAGLVVDLHPSDFTL 297 Query: 178 LEKVIVKMFADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232 V+ + +++ + ++ R+ ++ E + ++ A I+ Sbjct: 298 RLGVLESRAKTAAAAYPHVVLEEDVLPFLAHRISSNIRVLEGALTRLFAFAGLVNKSISI 357 Query: 233 SLAAEVLKETQQC 245 +L + L + + Sbjct: 358 ALTQDCLADILRA 370 >gi|317014942|gb|ADU82378.1| chromosomal replication initiation protein [Helicobacter pylori Gambia94/24] Length = 457 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 84/235 (35%), Gaps = 24/235 (10%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS 90 + ++ +V S + P V+ G +G GK+ + N + + Sbjct: 110 VKDSYTFENFVVGSCNNTVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALE 169 Query: 91 TRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFN---DTQLFHI 129 + + + L D K + LL+D L + + FH Sbjct: 170 KHKKVVLVTSEDFLTDFLKHLDNKNMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEFFHT 229 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N +H +++ + P + L SR + K+ PD + ++ + Sbjct: 230 FNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKCQLN 289 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 +I + +++ YI Q + ++ E + K+ A I +LA VL++ Q+ Sbjct: 290 KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNATIDLNLAKTVLEDLQK 344 >gi|309805918|ref|ZP_07699950.1| chromosomal replication initiator protein DnaA [Lactobacillus iners LactinV 03V1-b] gi|308167694|gb|EFO69841.1| chromosomal replication initiator protein DnaA [Lactobacillus iners LactinV 03V1-b] Length = 333 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 82/234 (35%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW-----SD 86 + D + + A + P + + G G GK+ L ++ Sbjct: 4 NSKYTFDTFVQGEGNKLAAGAALAVADNPGSFYNPLFIFGGVGLGKTHLMQAIGHQMLTE 63 Query: 87 KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 K+ + +++ + I++ K +L++DI + + FH Sbjct: 64 KANAKIVYIQSETFVNDFINSIKNKTQDLFREKYRTCDLLLVDDIQFFAKKEGIQEEFFH 123 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 +++ ++MT+ P L SR V+I+ PD + ++ K Sbjct: 124 TFETLYNDQKQIVMTSDRLPNEIPDLSERLVSRFAWGLQVEITPPDLETRIAILRKKAEA 183 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + ID Y+ +++ ++ E + K+ A I +LA E L + Sbjct: 184 DGLGIDDNTLDYVASQVDTNIRELEGALVKVQAHATIEREDINLNLAKEALADL 237 >gi|308185298|ref|YP_003929431.1| chromosomal replication initiation protein [Helicobacter pylori SJM180] gi|308061218|gb|ADO03114.1| chromosomal replication initiation protein [Helicobacter pylori SJM180] Length = 455 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 84/235 (35%), Gaps = 24/235 (10%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS 90 + ++ +V S + P V+ G +G GK+ + N + + Sbjct: 108 VKDSYTFENFVVGSCNNTVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALE 167 Query: 91 TRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFN---DTQLFHI 129 + + + L D K + LL+D L + + FH Sbjct: 168 KHKKVVLVTSEDFLTDFLKHLDNKTMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEFFHT 227 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N +H +++ + P + L SR + K+ PD + ++ + Sbjct: 228 FNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKCQLN 287 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 +I + +++ YI Q + ++ E + K+ A I +LA VL++ Q+ Sbjct: 288 KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNATIDLNLAKTVLEDLQK 342 >gi|307638185|gb|ADN80635.1| Chromosomal replication initiator protein [Helicobacter pylori 908] gi|325996781|gb|ADZ52186.1| Chromosomal replication initiator protein [Helicobacter pylori 2018] gi|325998373|gb|ADZ50581.1| Chromosomal replication initiator protein [Helicobacter pylori 2017] Length = 457 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 84/235 (35%), Gaps = 24/235 (10%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS 90 + ++ +V S + P V+ G +G GK+ + N + + Sbjct: 110 VKDSYTFENFVVGSCNNTVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALE 169 Query: 91 TRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFN---DTQLFHI 129 + + + L D K + LL+D L + + FH Sbjct: 170 KHKKVVLVTSEDFLTDFLKHLDNKNMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEFFHT 229 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N +H +++ + P + L SR + K+ PD + ++ + Sbjct: 230 FNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKCQLN 289 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 +I + +++ YI Q + ++ E + K+ A I +LA VL++ Q+ Sbjct: 290 KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNATIDLNLAKTVLEDLQK 344 >gi|81251076|gb|ABB69878.1| DNA replication initiator protein [Nitrosospira sp. TYM9] Length = 475 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 33/234 (14%), Positives = 85/234 (36%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGPSGSGKSCLANIW------S 85 + ++ + A + A + P + G G GK+ L Sbjct: 141 NPSFTFNNFVTGKANQLARAGAIQVAERPGTAYNPFFIYGGVGLGKTHLIQAIGNFVLEH 200 Query: 86 DKSRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128 + + R+++ + + ++ + +L++DI + F+ Sbjct: 201 NSTAKVRYTHSEQYVSGVVRAYQHKAFDDFKRYYHSLDVLLIDDIQFFGGKNRTQEEFFY 260 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++ + +++T ++P L SR V + P+ + +++K Sbjct: 261 AFNALIEAHRQVIITCDSYPKEISGMEERLISRFGWGLTVAVEPPELEMRVAILLKKALM 320 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 I +D+ +A +I + + ++ E + ++ + G ++ LA E LK+ Sbjct: 321 ENIVLDENVAFFIAKHIRSNVRELEGALKRVLAYSRFTGHSLSLDLAREALKDL 374 >gi|15612482|ref|NP_224135.1| chromosomal replication initiation protein [Helicobacter pylori J99] gi|14194709|sp|Q9ZJ96|DNAA_HELPJ RecName: Full=Chromosomal replication initiator protein DnaA gi|4156038|gb|AAD06996.1| CHROMOSOMAL REPLICATION INITIATOR PROTEIN [Helicobacter pylori J99] Length = 457 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 84/235 (35%), Gaps = 24/235 (10%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS 90 + ++ +V S + P V+ G +G GK+ + N + + Sbjct: 110 VKDSYTFENFVVGSCNNTVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALE 169 Query: 91 TRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFN---DTQLFHI 129 + + + L D K + LL+D L + + FH Sbjct: 170 KHKKVVLVTSEDFLTDFLKHLDNKNMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEFFHT 229 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N +H +++ + P + L SR + K+ PD + ++ + Sbjct: 230 FNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKCQLN 289 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 +I + +++ YI Q + ++ E + K+ A I +LA VL++ Q+ Sbjct: 290 KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNATIDLNLAKTVLEDLQK 344 >gi|149912812|ref|ZP_01901346.1| chromosomal replication initiator protein DnaA [Roseobacter sp. AzwK-3b] gi|149813218|gb|EDM73044.1| chromosomal replication initiator protein DnaA [Roseobacter sp. AzwK-3b] Length = 473 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 38/244 (15%), Positives = 82/244 (33%), Gaps = 31/244 (12%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANI--WSDK 87 P + D +V E A + L G G GK+ L + W K Sbjct: 132 PLDERFTFDSFVVGKPNELAHAAARRVAEGGPVTFNPLFLYGGVGLGKTHLMHAIAWELK 191 Query: 88 SRSTRFSNIAKSLDS------------------ILIDTRKPVLLEDIDLLDFND---TQL 126 RS + + S + L + ++++D+ + + + Sbjct: 192 QRSPELTVLYLSAEQFMYRFVQALRDRKMMDFKELFRSVDVLMVDDVQFIAGKESTQEEF 251 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH N++ + ++++ P + SRL+ VV + D + ++ Sbjct: 252 FHTFNALVDQNKQIVISGDRAPGEIANLEDRIKSRLQCGLVVDLHPTDYELRLGILQSKS 311 Query: 187 AD--RQ---IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 RQ + + + ++ R+ ++ E + ++ A G IT L + L + Sbjct: 312 EHYARQYPDLKLSNGVLEFLAHRISTNVRVLEGALTRLFAFASLVGHEITLELTQDCLAD 371 Query: 242 TQQC 245 + Sbjct: 372 ILRA 375 >gi|253995375|ref|YP_003047439.1| chromosomal replication initiator protein DnaA [Methylotenera mobilis JLW8] gi|253982054|gb|ACT46912.1| chromosomal replication initiator protein DnaA [Methylotenera mobilis JLW8] Length = 472 Score = 99.8 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 85/234 (36%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDK---- 87 + ++ + A + A P + + G G GK+ L ++ Sbjct: 138 NPTFNFNNYVTGRANQLARAAAIQVAENPGSAYNPLFIYGGVGLGKTHLLQAIGNELRLH 197 Query: 88 ---------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDF---NDTQLFH 128 S++ K+ + D + +L++DI + F+ Sbjct: 198 NPDAKIRYLHAERYVSDVVKAYEHKAFDEFKRQYHSLDLLLIDDIQFFAKKTRTQEEFFY 257 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 NS+ + +++T T+P L +R V + P+ + +++K Sbjct: 258 AFNSLIEAKKQIVITCDTYPKEIADVDERLRTRFSWGLTVAVEPPELEMRVAILLKKAEA 317 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + +A +I +++ S+ E ++++ ++ G I LA + L++ Sbjct: 318 VNLNLPEDVAFFIAKQIRSSVRELEGALNRIIAMSKFTGHAIDVHLAKDALRDL 371 >gi|11132617|sp|Q9ZH76|DNAA_STRRE RecName: Full=Chromosomal replication initiator protein DnaA gi|3808288|gb|AAD08806.1| DNA replication initiator protein [Streptomyces reticuli] Length = 643 Score = 99.8 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 88/235 (37%), Gaps = 28/235 (11%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90 D ++ ++ A + P+ + + G SG GK+ L + +RS Sbjct: 305 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSL 364 Query: 91 -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128 R+ + + + + R +L++DI L + + FH Sbjct: 365 YPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFH 424 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 N++H + +++++ P V L D L +R + + + P+ + ++ K Sbjct: 425 TFNTLHNANKQIVLSSDRPPKQL-VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 483 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 Q+ ++ +I R+ R++ E + ++ A + L VLK+ Sbjct: 484 QEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDL 538 >gi|186680551|ref|YP_001863747.1| chromosomal replication initiation protein [Nostoc punctiforme PCC 73102] gi|226735830|sp|B2J2B2|DNAA_NOSP7 RecName: Full=Chromosomal replication initiator protein DnaA gi|186463003|gb|ACC78804.1| chromosomal replication initiator protein DnaA [Nostoc punctiforme PCC 73102] Length = 459 Score = 99.8 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 41/239 (17%), Positives = 75/239 (31%), Gaps = 38/239 (15%) Query: 17 KNDQPKNKEEQLF------FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---V 67 ++ P + E L SR +V + A + P + + Sbjct: 98 ESTNPSSIPESLPHHNHKTTELNSKYVFSR--FVVGANNRMAHAASLAVAESPGKEFNPL 155 Query: 68 ILVGPSGSGKSCLANI-----WSDKSRSTRFSNIAKSLDSILI---------------DT 107 L G G GK+ L W F + + LI Sbjct: 156 FLCGGVGLGKTHLMQAIGHYRWKICPDCKIFYVSTEQFTNDLITAIRKDSMQSFREHYRA 215 Query: 108 RKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164 +L++DI L+ + + F+ N++H+ +++ + P LCSR Sbjct: 216 ADVLLVDDIQFLEGKEYTQEEFFYTFNTLHEAGKQVVIASDRPPNQIPSLQERLCSRFSM 275 Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---RSLV-FAEKLVDKM 219 + I PD + ++ K D I + + + YI R L + V + Sbjct: 276 GLIADIQKPDLETRMAILQKKAEDENIRLPRDVIEYIASNYTSNIRELEGALIRAVAYI 334 >gi|254281820|ref|ZP_04956788.1| chromosomal replication initiator protein DnaA [gamma proteobacterium NOR51-B] gi|219678023|gb|EED34372.1| chromosomal replication initiator protein DnaA [gamma proteobacterium NOR51-B] Length = 478 Score = 99.8 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 40/232 (17%), Positives = 81/232 (34%), Gaps = 26/232 (11%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRF 93 G + D + + + A+ P + L G G GK+ L + + R+ + Sbjct: 146 GYTFDSFVEGKSNQLALAAAQQVAENPGNSYNPLFLYGGVGLGKTHLMHAVGNALRARKP 205 Query: 94 SNIAKSLDSILIDTR--------------------KPVLLEDID---LLDFNDTQLFHII 130 L S +L++DI D + + FH Sbjct: 206 DAKIVYLHSERFVADMVKALQLNAINDFKRYYRTVDALLIDDIQFFANKDRSQEEFFHTF 265 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N++ + +++T +P L SR V + P+ + +++K A+ Sbjct: 266 NALLEGGQQMILTCDRYPKEIDGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAAEAD 325 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 I + + A +I QR+ ++ E + ++ A G L + LK+ Sbjct: 326 IDLVPEAAFFIAQRIRSNVRELEGALKRVIASANFTGRPYDIELIKDSLKDL 377 >gi|29830859|ref|NP_825493.1| chromosomal replication initiation protein [Streptomyces avermitilis MA-4680] gi|38257424|sp|Q82FD8|DNAA_STRAW RecName: Full=Chromosomal replication initiator protein DnaA gi|29607972|dbj|BAC72028.1| putative replication initiator protein [Streptomyces avermitilis MA-4680] Length = 653 Score = 99.8 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 88/235 (37%), Gaps = 28/235 (11%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90 D ++ ++ A + P+ + + G SG GK+ L + +RS Sbjct: 315 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSL 374 Query: 91 -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128 R+ + + + + R +L++DI L + + FH Sbjct: 375 YPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFH 434 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 N++H + +++++ P V L D L +R + + + P+ + ++ K Sbjct: 435 TFNTLHNANKQIVLSSDRPPKQL-VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 493 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 Q+ ++ +I R+ R++ E + ++ A + L VLK+ Sbjct: 494 QEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDL 548 >gi|213966256|ref|ZP_03394440.1| chromosomal replication initiator protein DnaA [Corynebacterium amycolatum SK46] gi|213951108|gb|EEB62506.1| chromosomal replication initiator protein DnaA [Corynebacterium amycolatum SK46] Length = 582 Score = 99.8 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 38/256 (14%), Positives = 91/256 (35%), Gaps = 29/256 (11%) Query: 16 QKNDQPKNKEEQLFFSFPR-CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVG 71 + E + F P + + ++ + A + P R + + G Sbjct: 224 RSESHGTPTEMSMPFEEPTLNPNYTFETFVIGPQNKFAAAAAVAVAESPGRTYNPLFISG 283 Query: 72 PSGSGKSCLANIWSDKSRSTRFSNIAKS-----------LDSILIDTRKP---------- 110 SG GK+ L + ++ + N+ ++S+ D ++ Sbjct: 284 GSGLGKTHLLHGIGHYAK-HLYPNLRVRYVSSEEFTNDFINSVRDDAQESFKRRYRDLDM 342 Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 ++++DI L+ + + FH N++HQ + +++++ P L +R + Sbjct: 343 LIIDDIQFLEGKEGTQEEFFHTFNALHQSNHQIVLSSDRPPRELKTLEDRLRTRFQWGLN 402 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 + PD + ++ K + + + YI + S+ E + ++ A Sbjct: 403 PDLQYPDLETRIAILSKKAQLSDLAVPHNVLQYIAENTSSSIRELEGRLLQISAHASMIH 462 Query: 228 MGITRSLAAEVLKETQ 243 +T A E+L + Sbjct: 463 EPVTLKFAQEILGADE 478 >gi|239980787|ref|ZP_04703311.1| chromosomal replication initiation protein [Streptomyces albus J1074] Length = 697 Score = 99.8 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 88/235 (37%), Gaps = 28/235 (11%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90 D ++ ++ A + P+ + + G SG GK+ L + +RS Sbjct: 359 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFVYGESGLGKTHLLHAIGHYARSL 418 Query: 91 -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128 R+ + + + + R +L++DI L + + FH Sbjct: 419 YPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFH 478 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 N++H + +++++ P V L D L +R + + + P+ + ++ K Sbjct: 479 TFNTLHNANKQIVLSSDRPPKQL-VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 537 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 Q+ ++ +I R+ R++ E + ++ A + L VLK+ Sbjct: 538 QEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDL 592 >gi|77917619|ref|YP_355434.1| chromosomal replication initiation protein [Pelobacter carbinolicus DSM 2380] gi|77543702|gb|ABA87264.1| chromosomal replication initiator protein DnaA [Pelobacter carbinolicus DSM 2380] Length = 452 Score = 99.8 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 41/252 (16%), Positives = 93/252 (36%), Gaps = 32/252 (12%) Query: 16 QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGP 72 Q+ P+ L + + ++ S+ + A + + + + G Sbjct: 105 QEKTPPRANAYNL------NSRYTFETFVLGSSNQFASAAATAVANNPATTYNPLFIYGG 158 Query: 73 SGSGKSCLANIWSDK-------------SRSTRFSNIAKSLDSILID-------TRKPVL 112 G GK+ L N + + + + SL +D + +L Sbjct: 159 VGLGKTHLVNAVGNAILKKNPEMKVCYYTSEKFMNELINSLRYAKMDEFRTKFRSMDVLL 218 Query: 113 LEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 ++D+ + + + FH N+++ +++T+ FP L SR + + Sbjct: 219 IDDVQFIAGKERTQEEFFHTFNALYDSHKQIVVTSDKFPKEIPGLEERLRSRFEWGLIAD 278 Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229 I PD + + ++ I + K++A ++ + ++ E + ++ A Sbjct: 279 IQAPDMETKQAILKMKAEQNGIDLPKEVALFLASAVSSNIRELEGYLVRIGAYASLTATP 338 Query: 230 ITRSLAAEVLKE 241 IT S+A EVLK+ Sbjct: 339 ITLSMAQEVLKD 350 >gi|227500986|ref|ZP_03931035.1| DNA-directed DNA replication initiator protein [Anaerococcus tetradius ATCC 35098] gi|227216759|gb|EEI82157.1| DNA-directed DNA replication initiator protein [Anaerococcus tetradius ATCC 35098] Length = 459 Score = 99.8 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 33/222 (14%), Positives = 76/222 (34%), Gaps = 31/222 (13%) Query: 40 RDDLLVHSAIEQAVRLIDSWPSWPSRV--------VILVGPSGSGKSCLANIWS------ 85 + + + + A+ + + S + + G SG GK+ L + Sbjct: 125 FANFVEGKSNQYALGVSQAVAENISNKSQARLYNPLFIYGESGLGKTHLMQAIAHEILDN 184 Query: 86 -----------DKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128 +K + S + + + + + V L++DI + + + FH Sbjct: 185 RDDAYVMYLSSEKFTNEMISALRSTKNEKFREKYRSVDILLIDDIQFIAGKEGTQEEFFH 244 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N ++ +++++ P L SR +V I PD + ++ K Sbjct: 245 TFNDLYNTGKQIVISSDRPPKEIKHLENRLISRFSWGIIVDIGKPDFETRVAILQKKLDQ 304 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 +I+ + YI + ++ ++ E + A S I Sbjct: 305 LGAYIENDILFYIAENIDTNIRDLEGALSTAIAYAKSDNREI 346 >gi|28492968|ref|NP_787129.1| chromosomal replication initiator protein [Tropheryma whipplei str. Twist] gi|28572176|ref|NP_788956.1| chromosomal replication initiator protein DnaA [Tropheryma whipplei TW08/27] gi|61212757|sp|Q83N52|DNAA_TROWT RecName: Full=Chromosomal replication initiator protein DnaA gi|61212759|sp|Q83NZ5|DNAA_TROW8 RecName: Full=Chromosomal replication initiator protein DnaA gi|28410307|emb|CAD66693.1| chromosomal replication initiator protein DnaA [Tropheryma whipplei TW08/27] gi|28476008|gb|AAO44098.1| chromosomal replication initiator protein [Tropheryma whipplei str. Twist] Length = 478 Score = 99.8 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 86/235 (36%), Gaps = 26/235 (11%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-------- 82 + D+ +V + E A S P + + + G SG GK+ L + Sbjct: 143 VNPRFTFDNFVVGKSNELARAASISAAERPGKSFNPLFIYGDSGVGKTHLLHSIGNYAKF 202 Query: 83 ---------IWSDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFNDTQ---LF 127 + S+ + ++I+ + + + +++DI L F Sbjct: 203 LFPSLRIKYVSSEDFTNDFINSISSGTSQKFQEKYRQIDILMVDDIQFLQKKQETQESFF 262 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H NS+H L++++ P + SR + V I PD + ++ K Sbjct: 263 HTFNSLHNSSRQLVISSDLPPKQLMGFEDRMRSRFECGLVCDIQKPDLETRIAILQKKCQ 322 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + ++ YI S+ E + ++ LA I +LA +VL++ Sbjct: 323 NEKKEVSMEILTYIASCFSSSVRELEGALLRIFALASFNKEEINMTLAQKVLEDL 377 >gi|299143462|ref|ZP_07036542.1| DNA replication initiator protein, ATPase [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517947|gb|EFI41686.1| DNA replication initiator protein, ATPase [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 447 Score = 99.8 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 43/271 (15%), Positives = 97/271 (35%), Gaps = 42/271 (15%) Query: 3 LMKEDYSFFVPDKQKNDQ-PKNKEEQLFFSFPRCLGISRDDLLVHSAIE--------QAV 53 ++ ED +P ++K+ P+ + ++ +V + E A Sbjct: 84 ILTEDEDEIIPLRKKDTLLPETR---------LNPKYIFENFVVGKSNEFAHAAALAVAE 134 Query: 54 RLIDSWPSWPSRVVILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNI 96 +D S + + G G GK+ L S++ + ++I Sbjct: 135 NYLD-PSDAHSNPLFIYGGVGLGKTHLMQAIGHFVHQQDPNKKILYVTSEQFTNELINSI 193 Query: 97 AKSLDSILIDTRK---PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVS 150 + + + + +L++DI + D + FH N +H+ + +++T+ P Sbjct: 194 QTNKNEHFRNKYRKVDLLLIDDIQFIADKDRTQEEFFHTFNELHESNKQIVLTSDKPPKD 253 Query: 151 WGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L SR VV I PD + ++ + + +I Q ++ ++ Sbjct: 254 IKSLEERLISRFAWGLVVDIGTPDLETRIAILRSKADSEGFNVPDNIINFIAQNVKSNIR 313 Query: 211 FAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 E + ++ + +T AA VL++ Sbjct: 314 ELEGALSRIMAYSKLTVGEMTEQTAAIVLRD 344 >gi|291294405|ref|YP_003505803.1| chromosomal replication initiator protein DnaA [Meiothermus ruber DSM 1279] gi|290469364|gb|ADD26783.1| chromosomal replication initiator protein DnaA [Meiothermus ruber DSM 1279] Length = 439 Score = 99.8 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 33/234 (14%), Positives = 84/234 (35%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDS---WPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91 ++ +V A + P + + G G GK+ L + Sbjct: 106 NPKYIFENFVVGQNNNLAHAAAVAVAESPGNAYNPLFIYGGVGLGKTHLMHAVGHSVAQR 165 Query: 92 -----------------RFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128 + I + S D + V L++DI + + + FH Sbjct: 166 FPDKKIEYVSTETFTNELINAIREDRMSEFRDRYRSVDLLLVDDIQFIAGKERTQEEFFH 225 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++++ +++++ P L SR + + I PD + ++ Sbjct: 226 TFNALYEARKQIILSSDRPPKDILTLEARLRSRFEWGLITDIQPPDLETRVAILKMNSEY 285 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 R + + +++ YI +++ ++ E + ++ A G+ +++++A + L + Sbjct: 286 RNMRVPEEVLEYIARQITSNIRELEGALMRVIAYASLNGVQLSKAVAIKALSDV 339 >gi|302531358|ref|ZP_07283700.1| chromosomal replication initiator protein DnaA [Streptomyces sp. AA4] gi|302440253|gb|EFL12069.1| chromosomal replication initiator protein DnaA [Streptomyces sp. AA4] Length = 585 Score = 99.8 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 89/234 (38%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90 + D ++ ++ A + P+ + + G SG GK+ L + ++ Sbjct: 246 NEKYNFDTFVIGASNRFAHAAAVAVAEAPARAYNPLFIWGESGLGKTHLLHAVGHYAQRL 305 Query: 91 -----TRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDFND---TQLFH 128 R+ + + + + R +L++DI L+ + + FH Sbjct: 306 FPGMRVRYVSTEEFTNDFINSLRDDRKVAFQRRYRDIDILLVDDIQFLEGKEGTQEEFFH 365 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H + +++++ P L +R + + I P+ + ++ K A Sbjct: 366 TFNTLHNANKQIVVSSDRPPKRLETLEDRLRTRFEWGLITDIQPPELETRIAILRKKAAQ 425 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ + ++ +I R+E ++ E + ++ A + LA VL++ Sbjct: 426 DRLAVPGEVLEFIASRVEANIRELEGALIRVTAFASLNQQPVEVGLAEIVLRDL 479 >gi|326442161|ref|ZP_08216895.1| chromosomal replication initiation protein [Streptomyces clavuligerus ATCC 27064] Length = 587 Score = 99.8 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 36/234 (15%), Positives = 84/234 (35%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90 D ++ ++ A + P+ + + G SG GK+ L + +RS Sbjct: 249 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSL 308 Query: 91 -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128 R+ + + + + R +L++DI L + + FH Sbjct: 309 YPGTRVRYVSSEEFTNEFINSIRDGKGDAFRKRYRDVDILLVDDIQFLASKESTQEEFFH 368 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H + +++++ P L +R + + P+ + ++ K Sbjct: 369 TFNTLHNANKQIVLSSDRPPKQLMTLEDRLRNRFEWGLTTDVQPPELETRIAILRKKAVQ 428 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 Q+ ++ +I R+ R++ E + ++ A + L VLK+ Sbjct: 429 EQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDL 482 >gi|293611384|ref|ZP_06693680.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292826256|gb|EFF84625.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|325123493|gb|ADY83016.1| DNA replication initiator protein, transcriptional regulator of replication and housekeeping genes [Acinetobacter calcoaceticus PHEA-2] Length = 469 Score = 99.8 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 43/260 (16%), Positives = 94/260 (36%), Gaps = 38/260 (14%) Query: 13 PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLID-------SWPSWPSR 65 P PK +++L + + + + A + P Sbjct: 117 PTTNSVVNPKTPKKKLL-----NPQFTFSLFVEGRSNQMAAETCRKVLTQLGASQHNP-- 169 Query: 66 VVILVGPSGSGKSCLANI-----WSDKSRSTRFSNIAKSLDSILIDTR------------ 108 + L GP+G GK+ L K + ++S + + Sbjct: 170 -LFLYGPTGLGKTHLMQAVGNALLQAKPNARVMYMTSESFVQDFVSSLQKGKVEEFKKNC 228 Query: 109 ---KPVLLEDIDLLDFNDTQL---FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 +L++DI LL + L F+ N++ +++T+ +P P L SR Sbjct: 229 RSLDLLLVDDIHLLAGKEASLVEFFYTFNALLDESKQIILTSDRYPKELTELDPRLVSRF 288 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 V + PD + ++++K + + + + A +I Q++ ++ E ++K+ + Sbjct: 289 SWGLSVGVEPPDIETRIEILLKKAENSGVDLPRNCALFIAQQVVANVRELEGALNKVVAI 348 Query: 223 ALSRGMGITRSLAAEVLKET 242 + +G I + E LK+ Sbjct: 349 SRFKGAPIDLDVVRESLKDV 368 >gi|308175815|ref|YP_003915221.1| chromosomal replication initiator protein DnaA [Arthrobacter arilaitensis Re117] gi|307743278|emb|CBT74250.1| chromosomal replication initiator protein DnaA [Arthrobacter arilaitensis Re117] Length = 478 Score = 99.8 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 83/234 (35%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90 D ++ S+ A + P+ + + G SG GK+ L + +R Sbjct: 138 NPKYIFDTFVIGSSNRFAHAAAVAVAEAPAKAYNPLFIYGDSGLGKTHLLHAIGHYARHL 197 Query: 91 -----TRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLD---FNDTQLFH 128 R+ N + + + R +L++DI L + FH Sbjct: 198 YKGIRVRYVNSEEFTNDFINSIRDDEGASFKQTYRNVDILLIDDIQFLANKDATQEEFFH 257 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H ++ +++T+ P + SR + + I P+ + ++ K Sbjct: 258 TFNALHNHNKQVVITSDLPPKQLQGFEDRMRSRFEWGLLTDIQPPELETRIAILRKKADA 317 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + YI R+ ++ E + ++ A + +LA VLK+ Sbjct: 318 ENLSAPGDVMEYIASRISTNIRELEGALIRVTAFASLNNQPVDLALAETVLKDL 371 >gi|298373770|ref|ZP_06983759.1| DNA replication initiator protein, ATPase [Bacteroidetes oral taxon 274 str. F0058] gi|298274822|gb|EFI16374.1| DNA replication initiator protein, ATPase [Bacteroidetes oral taxon 274 str. F0058] Length = 458 Score = 99.8 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 30/234 (12%), Positives = 83/234 (35%), Gaps = 31/234 (13%) Query: 36 LGISRDDLLVHSAIEQAVRLIDSWPSWPSRV----VILVGPSGSGKSCLANIWSDK---- 87 + D+ + + + + P + + + G SG GK+ ++N + Sbjct: 126 EHYTFDNYIEGRSNKLVRSAGINVAQNPGKTMFNPLFIFGNSGVGKTHVSNAIGLEVKRR 185 Query: 88 ------------------SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQL 126 + + R++N L+ + ++++DI + Sbjct: 186 FPNKRVLYVSANLFELQYTDAVRYNNKNNFLN--FYQSLDVLIIDDIHQFMSKPGTQSTF 243 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 F+I + IH+ +++T P L +R + +I+ PD + + ++ Sbjct: 244 FNIFDHIHRLGKQIILTCDRQPSELNGMEERLLTRFRWGLTAEITKPDIELRKNILRHKI 303 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + + + +I + + ++ E V + + I+ LA +++ Sbjct: 304 KENGLHFPEDVVCFIAENITENIRDLEGAVISLLAHSTINNEDISIELAKKIID 357 >gi|99079842|ref|YP_611996.1| chromosomal replication initiation protein [Ruegeria sp. TM1040] gi|123252667|sp|Q1GKT2|DNAA_SILST RecName: Full=Chromosomal replication initiator protein DnaA gi|99036122|gb|ABF62734.1| chromosomal replication initiator protein DnaA [Ruegeria sp. TM1040] Length = 470 Score = 99.8 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 43/263 (16%), Positives = 94/263 (35%), Gaps = 32/263 (12%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILV 70 +++ N K+ E L + P + D +V E A ++L Sbjct: 111 NQEGNTSVKSPPEDLQAA-PLDPRFTFDSFVVGKPNELAHAAARRVAEGGPVTFNPLVLY 169 Query: 71 GPSGSGKSCLANI--WSDKSRSTRFSNIAKSLDSI------------------LIDTRKP 110 G G GK+ L + W K R+ + + S + L + Sbjct: 170 GGVGLGKTHLMHAIAWELKERNPELNVLYLSAEQFMYRFVQALRERKMMDFKHLFRSVDV 229 Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 ++++D+ + D + FH N++ + ++++A P + SRL+ V Sbjct: 230 LMVDDVQFIAGKDSTQEEFFHTFNALVDQNKQIIISADRAPGEIKDLEDRVKSRLQCGLV 289 Query: 168 VKISLPDDDFLEKVIV-KMFADRQ----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 V + D + ++ K+ +R+ + I + + R+ ++ E + ++ Sbjct: 290 VDLHPTDYELRLGILQTKVQQNRKNYPDLKIADGVLELLAHRISTNVRVLEGALTRLFAF 349 Query: 223 ALSRGMGITRSLAAEVLKETQQC 245 A G I L + L + + Sbjct: 350 ASLVGREIDMDLTQDCLADVLRA 372 >gi|119714273|ref|YP_921238.1| chromosomal replication initiator protein DnaA [Nocardioides sp. JS614] gi|119534934|gb|ABL79551.1| chromosomal replication initiator protein DnaA [Nocardioides sp. JS614] Length = 528 Score = 99.5 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 36/240 (15%), Positives = 87/240 (36%), Gaps = 26/240 (10%) Query: 29 FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWS 85 + + ++ S+ + P + +++ G SG GK+ L + Sbjct: 182 SLETRLNPKYTFETFVIGSSNRFPHAAAVAVAEAPGKAYNPLLVYGDSGLGKTHLLHAIG 241 Query: 86 DKSRS------TRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDF---N 122 RS R+ + + + + R +L++DI L+ Sbjct: 242 HYVRSLYTGAKVRYVSSEEFTNEFINAIRDDRQDRFKRRYRDVDVLLIDDIQFLEGKTQT 301 Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 + FH N++H + +++T+ P L +R + + + PD + ++ Sbjct: 302 QEEFFHTFNTLHNANKQIVLTSDRAPKRLEALEDRLRNRFEWGLITDVQPPDLETRIAIL 361 Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 K A ++ + +I +++ ++ E + ++ A + +LA VLK+ Sbjct: 362 RKKAAMDRLTAPPDVLEFIASKIQTNIRELEGALIRVTAFANLNRQEVDMTLAEIVLKDL 421 >gi|297625199|ref|YP_003686962.1| Chromosomal replication initiator protein [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296920964|emb|CBL55501.1| Chromosomal replication initiator protein [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 488 Score = 99.5 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 32/236 (13%), Positives = 85/236 (36%), Gaps = 29/236 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91 + D+ ++ S+ A + P + +++ G SG GK+ L + R+ Sbjct: 147 NPRYTFDNFVIGSSNRFAHAAAVAVAEAPGKAYNPLMIYGESGLGKTHLLHALGHYVRNY 206 Query: 92 R--FSNIAKSLDSILIDTRKPVLLED-----------------------IDLLDFNDTQL 126 S + + + V E+ ++ + Sbjct: 207 YSNVRVKYVSTEEMTNEFINAVG-ENRTAEFRRKYRDDVDVLLIDDIQFLEGKTQTQEEF 265 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 F+ N++H +++T+ P + L SR + + I PD + ++ + Sbjct: 266 FYTFNALHNAQRQIVLTSDRPPKALEQLESRLRSRFEWGLITDIQPPDPETRIAILQRKA 325 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 A + + + +I +++ ++ E + ++ A ++ ++A +VL++ Sbjct: 326 AADNLSVPPGVLEFIASKIQTNIRELEGALIRVTAFASLNREEVSLAVAEQVLRDL 381 >gi|222823047|ref|YP_002574620.1| chromosomal replication initiator protein DnaA [Campylobacter lari RM2100] gi|222538268|gb|ACM63369.1| chromosomal replication initiator protein DnaA [Campylobacter lari RM2100] Length = 442 Score = 99.5 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 79/233 (33%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWP-----SRVVILVGPSGSGKSCLANIWSDKSR 89 + + +V + + A + + + GP+G GK+ L + Sbjct: 102 NPSFTFESFVVGDSNQFAYATCKAITDKSKLGKLYNPIFIYGPTGLGKTHLLQAVGNVCL 161 Query: 90 STRFSNIAKSLDSILIDTR------------------KPVLLEDIDLLDFND---TQLFH 128 + I + D+ + D +L++D+ L D + F Sbjct: 162 DNGYKVIYATSDNFINDFTMHLNNKTMSKFHEKYKNCDVLLIDDVQFLGKTDKIQEEFFF 221 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N I + ++MT+ P L SR + I+ P D +I K Sbjct: 222 TFNEIKEKFGQIIMTSDNPPNMLKGITERLKSRFANGIIADITPPQLDTKIAIIKKKCEF 281 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 I++ ++ +YI M ++ E ++ ++ A IT + +K+ Sbjct: 282 NAIYLKPEVISYIATSMGDNIREIEGMITNLNAQARLFNQEITLEIVKSFMKD 334 >gi|126738627|ref|ZP_01754332.1| chromosomal replication initiation protein [Roseobacter sp. SK209-2-6] gi|126720426|gb|EBA17132.1| chromosomal replication initiation protein [Roseobacter sp. SK209-2-6] Length = 489 Score = 99.5 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 36/244 (14%), Positives = 82/244 (33%), Gaps = 31/244 (12%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANI--WSDK 87 P + D +V E A ++L G G GK+ L + W Sbjct: 148 PLDPRFTFDSFVVGKPNELAHAAARRVAEGGPVTFNPLVLYGGVGLGKTHLMHAIAWELT 207 Query: 88 SRSTRFSNIAKSLDSI------------------LIDTRKPVLLEDIDLLDFND---TQL 126 ++ + + S + L + ++++D+ + D + Sbjct: 208 EKNPHLNVLYLSAEQFMYRFVQALRERKMMDFKHLFRSVDVLMVDDVQFIAGKDSTQEEF 267 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH N++ + ++++A P + SRL+ VV + D + ++ Sbjct: 268 FHTFNALVDQNKQIIISADRAPGEIKDLEDRVKSRLQCGLVVDLHPTDYELRLGILQTKV 327 Query: 187 ADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 +Q + I + ++ R+ ++ E + ++ A G I L + L + Sbjct: 328 QMQQATYPDLQIADGVLEFLAHRISTNVRVLEGALTRLFAFASLVGREIDMDLTQDCLAD 387 Query: 242 TQQC 245 + Sbjct: 388 VLRA 391 >gi|82701136|ref|YP_410702.1| chromosomal replication initiator protein DnaA [Nitrosospira multiformis ATCC 25196] gi|123740823|sp|Q2YD61|DNAA_NITMU RecName: Full=Chromosomal replication initiator protein DnaA gi|81251041|gb|ABB69852.1| DNA replication initiator protein [Nitrosospira multiformis] gi|82409201|gb|ABB73310.1| chromosomal replication initiator protein DnaA [Nitrosospira multiformis ATCC 25196] Length = 476 Score = 99.5 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 38/255 (14%), Positives = 90/255 (35%), Gaps = 28/255 (10%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVILV 70 D + K K+E+ + + + A + A + P + Sbjct: 123 DTKDTKDAKEKQEKNPTRL--NPSFTFNTFVTGKANQLARAGAIQVAERPGVAYNPFFIY 180 Query: 71 GPSGSGKSCLANIW------SDKSRSTRFSNIAKSLDSILID--------------TRKP 110 G G GK+ L + + R+ + + + ++ + Sbjct: 181 GGVGLGKTHLIQAIGNFVVEQNPAAKVRYIHSEQYVSDVVRAYQHKAFDEFKRYYHSLDL 240 Query: 111 VLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 +L++DI + F+ N++ + +++T ++P L SR Sbjct: 241 LLIDDIQFFGGKNRTQEEFFYAFNALIEAHKQVIITCDSYPKEIAGMEERLISRFGWGLT 300 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 V + P+ + +++K I +D+ +A +I + + ++ E + ++ + G Sbjct: 301 VAVEPPELEMRVAILLKKALMEDIILDESVAFFIAKHIRSNVRELEGALKRVVAYSRFTG 360 Query: 228 MGITRSLAAEVLKET 242 +T LA E LK+ Sbjct: 361 HALTLDLAREALKDL 375 >gi|332296670|ref|YP_004438592.1| Chromosomal replication initiator protein dnaA [Treponema brennaborense DSM 12168] gi|332179773|gb|AEE15461.1| Chromosomal replication initiator protein dnaA [Treponema brennaborense DSM 12168] Length = 513 Score = 99.5 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 79/233 (33%), Gaps = 25/233 (10%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDK---- 87 + D+ + + P R +++ G G GK+ L ++ Sbjct: 174 NPNYTFDNFVTGDDNSFVYNAALAVSKNPGRTYNPLLIYGGVGLGKTHLMEAIGNEVYKS 233 Query: 88 SRSTRFSNIAKSLDSILIDT---------------RKPVLLEDID---LLDFNDTQLFHI 129 S A++ + I + +L++DI D +LFH Sbjct: 234 SGGNIVYITAENFTNEFIQSINTKTQSKFKSKYRNADILLIDDIHFFQDKDGTQEELFHT 293 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N++++ L+ T L SR + V I +P + ++ + Sbjct: 294 FNALYENFKQLVFTCDRPVSELKNMTDRLRSRFERGLSVDIHMPKYEIRRAILERKLQSM 353 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + ++ I Q ++ ++ E + KM G +T +A + L++T Sbjct: 354 GKKVPGEVIDLIAQNVQTNVRDLEASLTKMVAYIELTGKDLTIDVARKELRDT 406 >gi|288904224|ref|YP_003429445.1| Chromosomal replication initiator protein DnaA [Streptococcus gallolyticus UCN34] gi|306832484|ref|ZP_07465636.1| DNA-directed DNA replication initiator protein [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325977201|ref|YP_004286917.1| Chromosomal replication initiator protein dnaA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288730949|emb|CBI12493.1| Chromosomal replication initiator protein DnaA [Streptococcus gallolyticus UCN34] gi|304425384|gb|EFM28504.1| DNA-directed DNA replication initiator protein [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325177129|emb|CBZ47173.1| Chromosomal replication initiator protein dnaA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 451 Score = 99.5 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 38/262 (14%), Positives = 85/262 (32%), Gaps = 36/262 (13%) Query: 12 VPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVI 68 VP QKN P + D+ + A + P + Sbjct: 97 VPTTQKNTLP-------LVDSDLNTKYTFDNFVQGDENRWAFSASYAVADAPGTTYNPLF 149 Query: 69 LVGPSGSGKSCLANIWSDKS------------------RSTRFSNIAKSLDSILIDTRKP 110 + G G GK+ L N + +++ + R Sbjct: 150 IWGGPGLGKTHLLNAIGNAVLQNNPNARVKYITAENFINEFVIHIRLDTMEELKEKFRNL 209 Query: 111 --VLLEDIDLLD-----FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 +L++DI L + F+ N+++ + +++T+ P L +R K Sbjct: 210 DVLLIDDIQSLAKKTLSGTQEEFFNTFNALYDNNKQIVLTSDRTPDHLDNLEQRLVTRFK 269 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD-NL 222 + I+ PD + ++ + + Y+ + + ++ E + + Sbjct: 270 WGLTINITPPDFETRVAILTNKTQEYNYIFPQDTIEYLAGQFDSNVRDLEGALKDISLVA 329 Query: 223 ALSRGMGITRSLAAEVLKETQQ 244 ++ + IT +AAE ++ +Q Sbjct: 330 SIKKIETITVDVAAEAIRARKQ 351 >gi|108761581|ref|YP_628287.1| chromosomal replication initiator protein DnaA [Myxococcus xanthus DK 1622] gi|108465461|gb|ABF90646.1| chromosomal replication initiator protein DnaA [Myxococcus xanthus DK 1622] Length = 450 Score = 99.5 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 36/235 (15%), Positives = 90/235 (38%), Gaps = 29/235 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLAN-----IWSD 86 + D +V + + + P + + G +G GK+ L IW Sbjct: 116 NARFTFDTFVVADSNQLPAAAAQAVADKPGHHYNPLYIYGGTGLGKTHLLQAVGNLIWER 175 Query: 87 KSRSTRFSNIAKSLDSILIDTRK----------------PVLLEDIDLLDFNDT---QLF 127 ++ + +++ + +LL+DI L + + F Sbjct: 176 DPSQRVVFLSSEQFTNEYVESVREHRMGDFRRKFREECDVLLLDDIQFLGKREETQKEFF 235 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 + N++++ + ++++T+ T P L SR + I P + ++ K Sbjct: 236 YTFNTLYEMNKAIVLTSDTVPAEIPGLEDRLRSRFAMGLMTDIREPTYETRVAILQKKAV 295 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN-LALSRGMGITRSLAAEVLKE 241 + + +A +I + +++++ E + K+ +L+R +T A++VL++ Sbjct: 296 AEGLDLPDSVAHFIAKHIQKNVRELEGALVKLSAVHSLTRQ-PVTEDFASQVLRD 349 >gi|111115264|ref|YP_709882.1| chromosomal replication initiator protein [Borrelia afzelii PKo] gi|216263632|ref|ZP_03435627.1| chromosomal replication initiator protein DnaA [Borrelia afzelii ACA-1] gi|123046987|sp|Q0SN72|DNAA_BORAP RecName: Full=Chromosomal replication initiator protein DnaA gi|110890538|gb|ABH01706.1| chromosomal replication initiator protein [Borrelia afzelii PKo] gi|215980476|gb|EEC21297.1| chromosomal replication initiator protein DnaA [Borrelia afzelii ACA-1] Length = 485 Score = 99.5 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 37/209 (17%), Positives = 77/209 (36%), Gaps = 26/209 (12%) Query: 37 GISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST-- 91 + ++ ++ + A I P ++ G G GK+ L +K+ Sbjct: 145 RYTFENFIIGPNNKLAYNASLSISKNPGTKYNPCLIYGGVGLGKTHLLQSIGNKTEELHN 204 Query: 92 ---RFSNIAKSLDSILIDTRKP---------------VLLEDIDLLDFND---TQLFHII 130 A++ + +++ K +L++DI L + +LFH Sbjct: 205 NLKILYVTAENFLNEFVESIKTHETKKFKKKYRYLDMLLIDDIHDLQKKEGIQEELFHTF 264 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N++++ + L+ T P L SR V IS P+ + +I K + Sbjct: 265 NALYEDNKQLVFTCDRPPSELTNFTDRLKSRFTRGLNVDISKPNFELRVAIIEKKAEEDG 324 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 I + K + + Q++ ++ E V K+ Sbjct: 325 IKVPKNILNLVAQKVTTNVRDLEAAVTKL 353 >gi|294813740|ref|ZP_06772383.1| Chromosomal replication initiator protein dnaA [Streptomyces clavuligerus ATCC 27064] gi|294326339|gb|EFG07982.1| Chromosomal replication initiator protein dnaA [Streptomyces clavuligerus ATCC 27064] Length = 597 Score = 99.5 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 36/234 (15%), Positives = 84/234 (35%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90 D ++ ++ A + P+ + + G SG GK+ L + +RS Sbjct: 259 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSL 318 Query: 91 -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128 R+ + + + + R +L++DI L + + FH Sbjct: 319 YPGTRVRYVSSEEFTNEFINSIRDGKGDAFRKRYRDVDILLVDDIQFLASKESTQEEFFH 378 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H + +++++ P L +R + + P+ + ++ K Sbjct: 379 TFNTLHNANKQIVLSSDRPPKQLMTLEDRLRNRFEWGLTTDVQPPELETRIAILRKKAVQ 438 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 Q+ ++ +I R+ R++ E + ++ A + L VLK+ Sbjct: 439 EQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDL 492 >gi|167951344|ref|ZP_02538418.1| chromosomal replication initiator protein DnaA [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 424 Score = 99.5 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 83/235 (35%), Gaps = 26/235 (11%) Query: 37 GISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK------ 87 + + + + + A I S P + + G G GK+ L + + Sbjct: 92 SFTFESFVEGKSNQLARAASMQIASNPGKAYNPLFIYGGVGLGKTHLMHAVGNAILSENP 151 Query: 88 -------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLFHII 130 +++ ++L ID + +L++DI + + FH Sbjct: 152 NAKVLYLHSERFVADMVRALQHNKIDEFKKRYRSVNALLIDDIQFFAGKERSQEEFFHTF 211 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N++ + +++++ FP L SR V I PD + ++ Sbjct: 212 NALFESQQQIILSSDRFPKEVKGLEERLKSRFGWGLTVAIEPPDLETRVAILKSKALQLN 271 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 + + ++A +I +++ ++ E + ++ + G I+ + L++ Sbjct: 272 VELGDEVAFFIGKKIRSNIRELEGALRRVVANSTFTGKEISIEFSKNALRDMLAA 326 >gi|300865784|ref|ZP_07110539.1| Chromosomal replication initiator protein dnaA [Oscillatoria sp. PCC 6506] gi|300336225|emb|CBN55694.1| Chromosomal replication initiator protein dnaA [Oscillatoria sp. PCC 6506] Length = 452 Score = 99.5 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 76/231 (32%), Gaps = 30/231 (12%) Query: 19 DQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGS 75 D P++ Q +V S A + P R + L G G Sbjct: 98 DIPESHSHQQPKPANLNPKYIFARFVVGSNNRMAHAASLAVAESPGREFNPLFLCGGVGL 157 Query: 76 GKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTRKP---VLLED 115 GK+ L ++K + + I K D + +L++D Sbjct: 158 GKTHLMQAIGHYRLEIDPDAKIFYVSTEKFTNDLIAAIRKDSMQSFRDNYRAADVLLVDD 217 Query: 116 IDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 I ++ + + FH N++H+ +++ + P LCSR + I L Sbjct: 218 IQFIEGKEYTQEEFFHTFNTLHEAGKQIVLASDRPPNQIPRLQERLCSRFSMGLIADIQL 277 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---RSLV-FAEKLVDKM 219 PD + ++ K + + + + YI + R L + V + Sbjct: 278 PDLETRMAILQKKAEYENMRLPRDVIEYIASSYKSNIRELEGALIRAVAYL 328 >gi|329938638|ref|ZP_08288034.1| chromosomal replication initiator protein [Streptomyces griseoaurantiacus M045] gi|329302129|gb|EGG46021.1| chromosomal replication initiator protein [Streptomyces griseoaurantiacus M045] Length = 721 Score = 99.5 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 88/235 (37%), Gaps = 28/235 (11%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90 D ++ ++ A + P+ + + G SG GK+ L + +RS Sbjct: 382 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSL 441 Query: 91 -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128 R+ + + + + R +L++DI L + + FH Sbjct: 442 YPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFH 501 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 N++H + +++++ P V L D L +R + + + P+ + ++ K Sbjct: 502 TFNTLHNANKQIVLSSDRPPKQL-VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 560 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 Q+ ++ +I R+ R++ E + ++ A + L VLK+ Sbjct: 561 QEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDL 615 >gi|295108627|emb|CBL22580.1| chromosomal replication initiator protein DnaA [Ruminococcus obeum A2-162] Length = 459 Score = 99.5 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 86/236 (36%), Gaps = 29/236 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLAN-----IWSD 86 D +V + + A + P + + G +G GK+ L + I Sbjct: 119 NPKYIFDTFIVGNNNKFAQAAALAVAESPGDTYNPLFIYGGAGLGKTHLMHSIAHYIIEH 178 Query: 87 KSRSTRFSNIAKSLDSILIDTRK------------------PVLLEDIDLLDFND---TQ 125 S ++ + LI+T + +L++DI + + + Sbjct: 179 DENSKVLYVTSEEFTNELIETIRNGNNSAMSKFREKYRNIDVLLVDDIQFIIGKESTQEE 238 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 FH NS+H +++++ P + SR + + I+LPD + ++ K Sbjct: 239 FFHTFNSLHSAKKQIIISSDKPPKDMEILEERFRSRFEWGLIADITLPDYETRMAILHKK 298 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 I +++ YI ++ ++ E +K+ + +T LA + LK+ Sbjct: 299 EEMEGYNISEEVIKYIATNIKSNIRELEGAFNKVMASSKLEKKEVTLELAEQALKD 354 >gi|300778760|ref|ZP_07088618.1| DNA-directed DNA replication initiator protein [Chryseobacterium gleum ATCC 35910] gi|300504270|gb|EFK35410.1| DNA-directed DNA replication initiator protein [Chryseobacterium gleum ATCC 35910] Length = 484 Score = 99.1 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 37/259 (14%), Positives = 78/259 (30%), Gaps = 37/259 (14%) Query: 10 FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSR 65 F VP +K + S D + + A + + Sbjct: 134 FVVPGIRKVN----------IDSNLKPDYSFDSYVEGESNKFAATVARSIAKRPGATAFN 183 Query: 66 VVILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTR 108 + L G G GK+ L S+K S + + Sbjct: 184 PLFLYGGYGVGKTHLGQAVGLEVKNQFPDKVVLYLSSEKFIQQFISAAKAHKQTEFANFY 243 Query: 109 KPV---LLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 + V +++DI L FHI + +HQ +++T+ P + SR Sbjct: 244 QMVDVLIIDDIQFLSGKSATQDSFFHIFDHLHQNGKQIILTSDKAPADIMDIQDRIVSRF 303 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 K +I PD ++I + I + + ++ + ++ +++ + Sbjct: 304 KWGLSAEIKSPDLSTRRQIIEDKLSRDGIVLPGDMLDFLAAEAKTNVRELIGVINSVIAY 363 Query: 223 ALSRGMGITRSLAAEVLKE 241 + ++ L E + Sbjct: 364 STVYKRDLSLELLKETINR 382 >gi|257065521|ref|YP_003151777.1| chromosomal replication initiator protein DnaA [Anaerococcus prevotii DSM 20548] gi|256797401|gb|ACV28056.1| chromosomal replication initiator protein DnaA [Anaerococcus prevotii DSM 20548] Length = 459 Score = 99.1 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 33/209 (15%), Positives = 72/209 (34%), Gaps = 34/209 (16%) Query: 40 RDDLLVHSAIEQAVRLIDSWPSWPSRV--------VILVGPSGSGKSCLANIWS------ 85 + + + + A+ + + S + + G SG GK+ L + Sbjct: 125 FANFVEGKSNQYALGVSQAVAENISNKSQARLYNPLFIYGESGLGKTHLMQAIAHEILDN 184 Query: 86 -----------DKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128 +K + S + + + + + V L++DI + + + FH Sbjct: 185 RDDAYVMYLSSEKFTNEMISALRSTKNEKFREKYRSVDILLIDDIQFIAGKEGTQEEFFH 244 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N ++ +++++ P L SR +V I PD + ++ K Sbjct: 245 TFNDLYNTGKQIVISSDRPPKEIKHLENRLISRFSWGIIVDIGKPDFETRVAILQKKLDQ 304 Query: 189 RQIFIDKKLAAYIVQRME---RSLVFAEK 214 +ID + YI + ++ R L A Sbjct: 305 LGAYIDNNILFYIAENIDTNIRDLEGALS 333 >gi|261840200|gb|ACX99965.1| chromosomal replication initiator protein DnaA [Helicobacter pylori 52] Length = 455 Score = 99.1 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 84/235 (35%), Gaps = 24/235 (10%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRS 90 + ++ +V S + P V+ G +G GK+ + N + + Sbjct: 108 VKDSYTFENFVVGSCNNTVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALE 167 Query: 91 TRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFN---DTQLFHI 129 + + + L D K + LL+D L + + FH Sbjct: 168 KHKKVVLVTSEDFLTDFLKHLDNKTMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEFFHT 227 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N +H +++ + P + L SR + K+ PD + ++ + Sbjct: 228 FNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKCQLN 287 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 +I + +++ YI Q + ++ E + K+ A I +LA +L++ Q+ Sbjct: 288 KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNATIDLNLAKTILEDLQK 342 >gi|254463654|ref|ZP_05077065.1| chromosomal replication initiator protein DnaA [Rhodobacterales bacterium Y4I] gi|206684562|gb|EDZ45044.1| chromosomal replication initiator protein DnaA [Rhodobacterales bacterium Y4I] Length = 470 Score = 99.1 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 38/244 (15%), Positives = 85/244 (34%), Gaps = 31/244 (12%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANI--WSDK 87 P + D +V E A ++L G G GK+ L + W K Sbjct: 129 PLDPRFTFDSFVVGKPNELAHAAARRVGEGGPVTFNPLVLYGGVGLGKTHLMHAIAWELK 188 Query: 88 SRSTRFSNIAKSLDSI------------------LIDTRKPVLLEDIDLLDFND---TQL 126 ++ + + S + L + ++++D+ + D + Sbjct: 189 EKNPHLNVLYLSAEQFMYRFVQALRERKMMDFKHLFRSVDVLMVDDVQFIAGKDSTQEEF 248 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV-KM 185 FH N++ + ++++A P + SRL+ VV + D + ++ K+ Sbjct: 249 FHTFNALVDQNKQIIISADRAPGEIKDLEDRVKSRLQCGLVVDLHPTDYELRLGILQTKV 308 Query: 186 FADRQ----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 R+ + I + ++ R+ ++ E + ++ A G I L + L + Sbjct: 309 QQQRETYPDLRIADGVLEFLAHRISTNVRVLEGALTRLFAFASLVGREIDMDLTQDCLAD 368 Query: 242 TQQC 245 + Sbjct: 369 VLRA 372 >gi|116668569|ref|YP_829502.1| chromosomal replication initiator protein DnaA [Arthrobacter sp. FB24] gi|116608678|gb|ABK01402.1| chromosomal replication initiator protein DnaA [Arthrobacter sp. FB24] Length = 474 Score = 99.1 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 40/234 (17%), Positives = 82/234 (35%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90 D ++ S+ A + P+ + + G SG GK+ L + +R Sbjct: 134 NPKYVFDTFVIGSSNRFAHAAAVAVAEAPAKAYNPLFIYGDSGLGKTHLLHAIGHYARRL 193 Query: 91 -----TRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDFNDTQL---FH 128 R+ N + + + R +L++DI L D L FH Sbjct: 194 YSGIRVRYVNSEEFTNDFINSIRDDEGTSFKTTYRNVDVLLIDDIQFLAGKDRTLEEFFH 253 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H + +++T+ P + SR + + I P+ + ++ K Sbjct: 254 TFNALHNNNKQVVITSDQPPKLLAGFEDRMKSRFEWGLLTDIQPPELETRIAILRKKALS 313 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + YI ++ ++ E + ++ A + +LA VLK+ Sbjct: 314 EGLSAPDDALEYIASKISSNIRELEGALIRVTAFASLNRQPVDVALAEMVLKDL 367 >gi|260579561|ref|ZP_05847432.1| replication initiator protein [Corynebacterium jeikeium ATCC 43734] gi|258602332|gb|EEW15638.1| replication initiator protein [Corynebacterium jeikeium ATCC 43734] Length = 583 Score = 99.1 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 38/264 (14%), Positives = 92/264 (34%), Gaps = 34/264 (12%) Query: 17 KNDQPKNKEEQLFFSFP--------RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-- 66 ++ P Q SF + ++ +V S+ A + P++ Sbjct: 218 RHTSPHTPSPQPSSSFNDGLDGESLLNKNYTFENFVVGSSNNFAAAACRAVAEAPAKAYN 277 Query: 67 -VILVGPSGSGKSCLANIWSDKSRSTR-----------------FSNIAKSLDSILIDTR 108 + + G SG GK+ L + ++ + ++IA Sbjct: 278 PLFIWGESGLGKTHLLHAIGHYAKELQPNMRVKYVSSEELTNDFINSIANDTRESFKRRY 337 Query: 109 K---PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 + ++++DI L + + FH N++HQ + +++++ P L +R Sbjct: 338 RNLDMLIVDDIQFLQNKESTQEEFFHTFNALHQANKQIVLSSDRPPRQLTTLEDRLRTRF 397 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 + + + PD + ++ K + + + + I R E+S+ + + ++ Sbjct: 398 EGGLITDVQTPDLETRIAILTKKAESDNVQLPEDVKVLIASRYEKSIRELDGALIRVTAY 457 Query: 223 ALSRGMGITRSLAAEVLKETQQCD 246 +T A L++ D Sbjct: 458 CALSHEPLTVETAEIALRDISPAD 481 >gi|56695074|ref|YP_165421.1| chromosomal replication initiation protein [Ruegeria pomeroyi DSS-3] gi|71151804|sp|Q5LWV4|DNAA_SILPO RecName: Full=Chromosomal replication initiator protein DnaA gi|56676811|gb|AAV93477.1| chromosomal replication initiator protein DnaA [Ruegeria pomeroyi DSS-3] Length = 468 Score = 99.1 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 36/244 (14%), Positives = 81/244 (33%), Gaps = 31/244 (12%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANI--WSDK 87 P + D +V E A ++L G G GK+ L + W K Sbjct: 127 PLDPRFTFDSFVVGKPNELAHAAARRVSEGGPVTFNPLVLYGGVGLGKTHLMHAIAWELK 186 Query: 88 SRSTRFSNIAKSLDSI------------------LIDTRKPVLLEDIDLLDFND---TQL 126 + + + S + L + ++++D+ + D + Sbjct: 187 VKRPELNVLYLSAEQFMYRFVQALRERRMMDFKHLFRSVDVLMVDDVQFIAGKDSTQEEF 246 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH N++ + ++++A P + SRL+ VV + D + ++ Sbjct: 247 FHTFNALVDQNKQIIISADRAPGEIKDLEDRVKSRLQCGLVVDLHPTDYELRLGILQTKV 306 Query: 187 ADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + + I + ++ R+ ++ E + ++ A G I L + L + Sbjct: 307 QMYRTTYPDLVIADGVLEFLAHRISTNVRVLEGALTRLFAFASLVGREIDMELTQDCLAD 366 Query: 242 TQQC 245 + Sbjct: 367 VLRA 370 >gi|220910784|ref|YP_002486093.1| chromosomal replication initiator protein DnaA [Arthrobacter chlorophenolicus A6] gi|219857662|gb|ACL38004.1| chromosomal replication initiator protein DnaA [Arthrobacter chlorophenolicus A6] Length = 473 Score = 99.1 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 41/234 (17%), Positives = 82/234 (35%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90 D ++ S+ A + P+ + + G SG GK+ L + +R Sbjct: 133 NPKYVFDTFVIGSSNRFAHAAAVAVAEAPAKAYNPLFIYGDSGLGKTHLLHAIGHYARRL 192 Query: 91 -----TRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDFNDTQL---FH 128 R+ N + + + R +L++DI L D L FH Sbjct: 193 YSGIRVRYVNSEEFTNDFINSIRDDEGASFKTTYRNVDVLLIDDIQFLAGKDRTLEEFFH 252 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 NS+H + +++T+ P + SR + + I P+ + ++ K Sbjct: 253 TFNSLHNNNKQVVITSDQPPKLLAGFEDRMKSRFEWGLLTDIQPPELETRIAILRKKALS 312 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + YI ++ ++ E + ++ A + +LA VLK+ Sbjct: 313 EGLSAPDDALEYIASKISSNIRELEGALIRVTAFASLNRQPVDVALAEMVLKDL 366 >gi|166032891|ref|ZP_02235720.1| hypothetical protein DORFOR_02612 [Dorea formicigenerans ATCC 27755] gi|166027248|gb|EDR46005.1| hypothetical protein DORFOR_02612 [Dorea formicigenerans ATCC 27755] Length = 462 Score = 99.1 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 42/252 (16%), Positives = 83/252 (32%), Gaps = 42/252 (16%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSD----- 86 + D +V A + P + L G G GK+ L + + Sbjct: 114 NPKYTFDTFVVGGNNNFAHAASLAVAESPGEVYNPLFLYGGVGLGKTHLMHSIAHFILDK 173 Query: 87 ----------------------KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND- 123 ++ T + A +L++DI + + Sbjct: 174 NPKKKVLYVTSETFTNELIDALRNGKTAGNESAMLNFRDKYRNIDVLLIDDIQFIIGKES 233 Query: 124 --TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 + FH N +H +++++ P L +R + + IS PD + + Sbjct: 234 TQEEFFHTFNHLHTLGKQIIISSDKPPKDIETLESRLRTRFEWGLIADISSPDYETRMAI 293 Query: 182 IVKMFADRQIF---IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR----GMGITRSL 234 + K + I + YI ++ ++ E ++K+ +AL + I +L Sbjct: 294 LQKKIELDHLEKYNIKNDVLDYIAANVKSNIRELEGSLNKL--IALYKLNNNNNPIDIAL 351 Query: 235 AAEVLKETQQCD 246 AAE LK+ D Sbjct: 352 AAEALKDIISSD 363 >gi|227529862|ref|ZP_03959911.1| DNA-directed DNA replication initiator protein [Lactobacillus vaginalis ATCC 49540] gi|227350231|gb|EEJ40522.1| DNA-directed DNA replication initiator protein [Lactobacillus vaginalis ATCC 49540] Length = 439 Score = 99.1 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 46/258 (17%), Positives = 91/258 (35%), Gaps = 29/258 (11%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDS---WPSWPSRVVILV 70 D +ND+P P + +V + A + P + + Sbjct: 85 DPYQNDRPAESNN-FEMDTPLNPHYNFKTFVVGEGNKMAHAAAFAVAESPGGLYNPLFIY 143 Query: 71 GPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTRK---P 110 G G GK+ L S++ + +I + + + Sbjct: 144 GGVGLGKTHLMEAIGNHMLQLNPAAKVKYVTSEEFTNDFIHSIQSNSTEKFREEYRNLDL 203 Query: 111 VLLEDIDLLD---FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAAT 166 +L++DI L + F+ N++H ++MT+ P L D L SR + Sbjct: 204 LLIDDIQFLANKEGTQLEFFNTFNALHDNKKQIVMTSDRIPNEIP-ELQDRLVSRFRWGL 262 Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 V+I+ PD + ++ + I I YI +++ ++ E + K+ + Sbjct: 263 TVEITPPDLETRIAILRSKVEEDHINIGNDTLNYIAGQIDTNIRELEGALTKVQAFSNLS 322 Query: 227 GMGITRSLAAEVLKETQQ 244 IT LA++ L+ Q+ Sbjct: 323 QEPITPHLASQALRGLQR 340 >gi|254437134|ref|ZP_05050628.1| chromosomal replication initiator protein DnaA [Octadecabacter antarcticus 307] gi|198252580|gb|EDY76894.1| chromosomal replication initiator protein DnaA [Octadecabacter antarcticus 307] Length = 446 Score = 99.1 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 36/242 (14%), Positives = 81/242 (33%), Gaps = 31/242 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRST 91 + D +V E A + L G G GK+ L + + + Sbjct: 107 NQRFNFDSFVVGKPNELAHAAAKRVAEGGPVTFNPLFLYGGVGLGKTHLMHAIAHELGLR 166 Query: 92 R--FSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFH 128 R + + S D + + +++DI L+ + + FH Sbjct: 167 RPDLNVLYVSADQFIYRFISALRDRKMMDFKQHFRSVDVLMVDDIQFLEGKESTQEEFFH 226 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++ ++++A P + SRL+ VV + D + ++ Sbjct: 227 TYNALADQGKQMIISADRAPGEIRDLSERIKSRLQCGLVVDLHPTDYELRLGILHSKQEM 286 Query: 189 -----RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 + I + ++ R+ ++ E ++++ LA G +T +A + L + Sbjct: 287 FVNVYPGVEIATGVLEFLAHRISSNVRVLEGALNRLYALASLVGRVVTVEMAQDCLSDIL 346 Query: 244 QC 245 + Sbjct: 347 RA 348 >gi|317496618|ref|ZP_07954965.1| chromosomal replication initiator protein DnaA [Gemella moribillum M424] gi|316913283|gb|EFV34782.1| chromosomal replication initiator protein DnaA [Gemella moribillum M424] Length = 343 Score = 99.1 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 36/241 (14%), Positives = 81/241 (33%), Gaps = 38/241 (15%) Query: 38 ISRDDLLVHSAIEQAVRLIDSW-----PSWPSRVVILVGPSGSGKSCLANIWSDKSRS-- 90 + ++ +V + +W P + + G G GK+ L + ++ + Sbjct: 5 YTFENFVVGEGNAFTHNI--AWNVAVEPGGIYNPLFIYGGVGLGKTHLLHAIGNEMENNF 62 Query: 91 ------------------TRFSNIAKSLDSILIDTRK------PVLLEDIDLLDF---ND 123 + D R+ +L++DI L Sbjct: 63 PDFKIECISSEKFLNEFLASIKPMKNKNVGADEDFRRKYRDVDALLIDDIQFLSGKTETQ 122 Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVI 182 FH N + +++ + P L D L +R I+ PD + ++ Sbjct: 123 NAFFHTFNELQMNQKQIVLISDRSPSQLN-ELEDRLVTRFSQGITADITPPDFETRMAIL 181 Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 I + ++ YI + ++ E ++ ++ A S+ + ++A E+LK+T Sbjct: 182 KYKCEQFDIQLSEETLTYISNNISSNIRELEGVLKRIKFTATSKNQPPSLAIAEEILKDT 241 Query: 243 Q 243 + Sbjct: 242 R 242 >gi|171778195|ref|ZP_02919424.1| hypothetical protein STRINF_00263 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171283019|gb|EDT48443.1| hypothetical protein STRINF_00263 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 452 Score = 99.1 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 32/239 (13%), Positives = 79/239 (33%), Gaps = 29/239 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDKS--- 88 + D+ + A + P + + G G GK+ L N + Sbjct: 114 NTKYTFDNFVQGDENRWAFSASYAVADAPGTTYNPLFIWGGPGLGKTHLLNAIGNAVLQN 173 Query: 89 ---------------RSTRFSNIAKSLDSILIDTRKP--VLLEDIDLLD-----FNDTQL 126 +++ + R +L++DI L + Sbjct: 174 NPKARVKYITAENFINEFVIHIRLDTMEELKEKFRNLDVLLIDDIQSLAKKTLSGTQEEF 233 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 F+ N+++ + +++T+ P L +R K + I+ PD + ++ Sbjct: 234 FNTFNALYDNNKQIVLTSDRTPDHLDNLEQRLVTRFKWGLTINITPPDFETRVAILTNKT 293 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD-NLALSRGMGITRSLAAEVLKETQQ 244 + + Y+ + + ++ E + + ++ + IT +AAE ++ +Q Sbjct: 294 QEYDFVFPQDTIEYLAGQFDSNVRDLEGALKDISLVASIKKVQTITVDIAAEAIRARKQ 352 >gi|121607005|ref|YP_994812.1| chromosomal replication initiation protein [Verminephrobacter eiseniae EF01-2] gi|121551645|gb|ABM55794.1| chromosomal replication initiator protein DnaA [Verminephrobacter eiseniae EF01-2] Length = 483 Score = 99.1 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 38/256 (14%), Positives = 92/256 (35%), Gaps = 27/256 (10%) Query: 13 PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VIL 69 P + +++ Q ++ + L+ SA A P + + + Sbjct: 128 PGAESASAGRDEAPQ-ALRHRLNAALTFETLVEGSANRMARSAGMHVAGMPGHLYNPLFV 186 Query: 70 VGPSGSGKSCLANI-----WSDKSRSTRFSNIAKSLDSILIDTR---------------K 109 G G GK+ L + + + ++ A+ S ++ + Sbjct: 187 YGGVGLGKTHLVHAVGNRLLASRPQAKVLYVHAEQFVSDVVRSYQRRTFDEFKERYHSLD 246 Query: 110 PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 +L++D+ D + F+ ++ S L+MT+ T+P L SR + Sbjct: 247 LLLIDDVQFFANKDRTQEEFFNAFEALLTKKSHLVMTSDTYPKGLSNIHERLVSRFDSGL 306 Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 V I P+ + +++ + +++A ++ + + ++ E + K+ + Sbjct: 307 TVAIEPPELEMRVAILINKAQAESTEMPEEVAFFVAKNVRSNVRELEGALRKILAYSRFN 366 Query: 227 GMGITRSLAAEVLKET 242 I+ LA E L++ Sbjct: 367 QKEISIQLAREALRDL 382 >gi|68535063|ref|YP_249768.1| chromosomal replication initiator protein [Corynebacterium jeikeium K411] gi|123775787|sp|Q4JYF7|DNAA_CORJK RecName: Full=Chromosomal replication initiator protein DnaA gi|68262662|emb|CAI36150.1| chromosomal replication initiator protein [Corynebacterium jeikeium K411] Length = 583 Score = 99.1 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 38/264 (14%), Positives = 92/264 (34%), Gaps = 34/264 (12%) Query: 17 KNDQPKNKEEQLFFSFP--------RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-- 66 ++ P Q SF + ++ +V S+ A + P++ Sbjct: 218 RHTSPHTPSPQPSSSFNDGLDGESLLNKNYTFENFVVGSSNNFAAAACRAVAEAPAKAYN 277 Query: 67 -VILVGPSGSGKSCLANIWSDKSRSTR-----------------FSNIAKSLDSILIDTR 108 + + G SG GK+ L + ++ + ++IA Sbjct: 278 PLFIWGESGLGKTHLLHAIGHYAKELQPNMRVKYVSSEELTNDFINSIANDTRESFKRRY 337 Query: 109 K---PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 + ++++DI L + + FH N++HQ + +++++ P L +R Sbjct: 338 RNLDMLIVDDIQFLQNKESTQEEFFHTFNALHQANKQIVLSSDRPPRQLTTLEDRLRTRF 397 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 + + + PD + ++ K + + + + I R E+S+ + + ++ Sbjct: 398 EGGLITDVQTPDLETRIAILTKKAESDNVQLPEDVKVLIASRYEKSIRELDGALIRVTAY 457 Query: 223 ALSRGMGITRSLAAEVLKETQQCD 246 +T A L++ D Sbjct: 458 CALSHEPLTVETAEIALRDISPAD 481 >gi|300112746|ref|YP_003759321.1| chromosomal replication initiator protein DnaA [Nitrosococcus watsonii C-113] gi|299538683|gb|ADJ27000.1| chromosomal replication initiator protein DnaA [Nitrosococcus watsonii C-113] Length = 449 Score = 99.1 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 32/231 (13%), Positives = 78/231 (33%), Gaps = 26/231 (11%) Query: 38 ISRDDLLVHSAI---EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI----------- 83 + D + + A + P + + G G GK+ L + Sbjct: 118 YTFDSFVEGKSNQLPRAASHQVAENPGSAYNPLFIYGGVGLGKTHLMHAVGNYIRSLNPS 177 Query: 84 ------WSDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFHIIN 131 S++ + + + + + V L++DI + + F+ N Sbjct: 178 ARVVYLHSEQFVAEMIKALQLNAINEFKTRYRSVDILLIDDIQFFAGKERSQEEFFYTFN 237 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 ++ + +++T FP L SR V + P+ + +++ + I Sbjct: 238 TLLEVQHQIILTCDRFPKEVNGLEERLTSRFGWGLTVAVEPPELETRVAILMNKASIENI 297 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + +A ++ + + ++ E + ++ + IT L E LK+ Sbjct: 298 ILSDDVAFFLGRLIYSNVRELEGALRRVIAYSRFTHRPITMELTREALKDL 348 >gi|270284630|ref|ZP_05966430.2| putative ATP synthase F1, delta subunit [Bifidobacterium gallicum DSM 20093] gi|270276567|gb|EFA22421.1| putative ATP synthase F1, delta subunit [Bifidobacterium gallicum DSM 20093] Length = 560 Score = 99.1 bits (246), Expect = 6e-19, Method: Composition-based stats. Identities = 40/234 (17%), Positives = 85/234 (36%), Gaps = 31/234 (13%) Query: 40 RDDLLVHSAIEQAVRLIDSWPSWPSR---VVILVGPSGSGKSCLANIW------------ 84 D+ + + + A + + R + + G SG GK+ L N Sbjct: 224 FDNFVPGDSNQFARTVALAVAEGSGRDYNPLCIYGGSGLGKTHLLNAIGNYALVKDPSLK 283 Query: 85 ------SDKSRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQLFH 128 + + S + D+ + + +L++DI L Q FH Sbjct: 284 VRYVTTEEFTNEFIESIRPEGSDAKPMSEFNHRYRSVDVLLIDDIQFLSGKSQTMEQFFH 343 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++ Q + +++ + P L SR ++ VV + P+ + ++ M Sbjct: 344 TFNTLQQNNKRIVIASDVAPKKLRDFEDRLISRFESGLVVDVKPPELETRIAILRMMAET 403 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ + + + I + ++ E + ++ A ITR LA +VLK+ Sbjct: 404 NKVDVPRDVMDLIAEHCTENIRQLEGALTRVTAQATLNNQPITRILAEQVLKDY 457 >gi|322433660|ref|YP_004215872.1| chromosomal replication initiator protein DnaA [Acidobacterium sp. MP5ACTX9] gi|321161387|gb|ADW67092.1| chromosomal replication initiator protein DnaA [Acidobacterium sp. MP5ACTX9] Length = 492 Score = 99.1 bits (246), Expect = 6e-19, Method: Composition-based stats. Identities = 41/259 (15%), Positives = 89/259 (34%), Gaps = 31/259 (11%) Query: 14 DKQKNDQPKNKE-EQLFFSFPR----CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-- 66 + N P EQ F + D ++ S + A + PS+ Sbjct: 133 GARGNAAPAAPSTEQARFDWNAASQLNPRYQFDAFVIGSGNQFAAAAAQAVAERPSKAYN 192 Query: 67 -VILVGPSGSGKSCLANIWSDK------SRSTRFSNIAKSLDSILIDTR----------- 108 + L G G GK+ L + + S + + K + ++ R Sbjct: 193 PLFLYGGVGMGKTHLMHAIGHEVKRRMPHTSISYVSGEKFTNEMINSVRYDKMTTFRDKF 252 Query: 109 ---KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 +L++DI L + + FH N++H+ +++ + P L SR Sbjct: 253 RNVDVLLIDDIQFLAGKERTQEEFFHTFNALHETMKQIVIASDRPPKELADFEDRLRSRF 312 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 + + I PD + ++ + + +A +I + ++ E + ++ Sbjct: 313 EWGLIADIQPPDLETKVAILQRKAEAESTTLPTDVALFIASNVRTNVRELEGALIRVIAW 372 Query: 223 ALSRGMGITRSLAAEVLKE 241 G+ + +A + LK+ Sbjct: 373 CSHHGVECSLPVAQQCLKQ 391 >gi|297171395|gb|ADI22398.1| ATPase involved in DNA replication initiation [uncultured Planctomycetales bacterium HF0500_02G17] Length = 444 Score = 98.7 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 39/221 (17%), Positives = 84/221 (38%), Gaps = 28/221 (12%) Query: 35 CLGISRDDLLVHSAIE----QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS-- 88 +D LV + A+R+ + + L GPSG GK+ L + ++ Sbjct: 72 APRARLEDFLVGESNRLAHRAALRIAEGIDDAAFSPLFLHGPSGVGKTHLLEGIARRTQE 131 Query: 89 ---RSTRFSNIAKSLDSILIDTR---------------KPVLLEDIDLLDF---NDTQLF 127 + A++ + I+ + ++D+ L T+L Sbjct: 132 RNPGARVRYVTAEAFTNEFINAIQNRGMDSFRKTWRGVTLLCIDDVHFLRGKQSTQTELL 191 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H ++++ + +++ + P L SR VV+I PDD +++V + A Sbjct: 192 HTLDAVGLRQARIVLASDEPPRKIAELSDQLVSRFMGGAVVRIDEPDDALCRQLLVALAA 251 Query: 188 DRQIFIDKKLAAYIVQR-MERSLVFAEKLVDKMDNLALSRG 227 R + + + +VQR +E++ ++ + +A R Sbjct: 252 RRGLVFTEDGISMLVQRALEQNRRNVREIEGLLTQVAAVRR 292 >gi|259417770|ref|ZP_05741689.1| chromosomal replication initiator protein DnaA [Silicibacter sp. TrichCH4B] gi|259346676|gb|EEW58490.1| chromosomal replication initiator protein DnaA [Silicibacter sp. TrichCH4B] Length = 470 Score = 98.7 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 39/244 (15%), Positives = 85/244 (34%), Gaps = 31/244 (12%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANI--WSDK 87 P + D +V E A ++L G G GK+ L + W K Sbjct: 129 PLDPRFTFDSFVVGKPNELAHAAARRVGEGGPVTFNPLVLYGGVGLGKTHLMHAIAWELK 188 Query: 88 SRSTRFSNIAKSLDSI------------------LIDTRKPVLLEDIDLLDFND---TQL 126 R+ + + S + L + ++++D+ + D + Sbjct: 189 ERNPELNVLYLSAEQFMYRFVQALRERKMMDFKHLFRSVDVLMVDDVQFIAGKDSTQEEF 248 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV-KM 185 FH N++ + ++++A P + SRL+ VV + D + ++ K+ Sbjct: 249 FHTFNALVDQNKQIIISADRAPGEIKDLEDRVKSRLQCGLVVDLHPTDYELRLGILQTKV 308 Query: 186 FADRQ----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 +R+ + I + + R+ ++ E + ++ A G I L + L + Sbjct: 309 QQNRKNYPDLKIADGVLELLAHRISTNVRVLEGALTRLFAFASLVGREIDMDLTQDCLAD 368 Query: 242 TQQC 245 + Sbjct: 369 VLRA 372 >gi|238915977|ref|YP_002929494.1| chromosomal replication initiator protein DnaA [Eubacterium eligens ATCC 27750] gi|238871337|gb|ACR71047.1| chromosomal replication initiator protein DnaA [Eubacterium eligens ATCC 27750] Length = 451 Score = 98.7 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 40/241 (16%), Positives = 85/241 (35%), Gaps = 34/241 (14%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91 + D +V + A + P ++ + + G +G GK+ L + Sbjct: 115 NPNYTFDTFVVGTNNNLAHAASLAVAETPGQIYNPLFIYGGAGLGKTHLMQAIAH---FI 171 Query: 92 RFSNIAKSLDSILIDTRKPVLLE---------------DIDLLDFND-----------TQ 125 S+ +K + + +T L+E +ID+L +D + Sbjct: 172 IASDPSKKVLYVTSETFTNELIESVKTNKNTEFRNKYRNIDVLLIDDIQFIIGKLSTQEE 231 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVK 184 F+ N ++ +++++ P LPD L +R ++ V I +P + +I K Sbjct: 232 FFNTFNDLYLLGKQIVISSDRPPKEME-TLPDRLRTRFESGLPVDIQIPTYETKMAIINK 290 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 I ++ Y+ + S+ E + K+ + +T A LK+ Sbjct: 291 KSEALGIDFPYEVKDYVATNITSSIRELEGALTKLSAYSKLSHTPLTAEFAENTLKDLIS 350 Query: 245 C 245 Sbjct: 351 P 351 >gi|89052492|ref|YP_507943.1| chromosomal replication initiation protein [Jannaschia sp. CCS1] gi|123287123|sp|Q28WI0|DNAA_JANSC RecName: Full=Chromosomal replication initiator protein DnaA gi|88862041|gb|ABD52918.1| chromosomal replication initiator protein DnaA [Jannaschia sp. CCS1] Length = 475 Score = 98.7 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 33/242 (13%), Positives = 74/242 (30%), Gaps = 31/242 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWP---SWPSRVVILVGPSGSGKSCLANIWS-----D 86 + + +V E A + L G G GK+ L + + Sbjct: 136 NPNFTFANFVVGKPNELAHAAARRVAETLDVTFNPLFLYGGVGLGKTHLMHAIAWDLQDR 195 Query: 87 KSRSTRFSNIAKSLDSILIDTRKP---------------VLLEDIDLLDF---NDTQLFH 128 + A+ + + ++++D+ + + FH Sbjct: 196 HPDAKILFLSAEQFMHRFVRALREQDTFNFKETFRSVDILMVDDVQFIAGKTSTQQEFFH 255 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++ + ++++ PV + SRL+ VV I D + V+ Sbjct: 256 TFNALVEMGKQIVISGDRAPVDMEELDNRIASRLQCGLVVDIHPTDYELRLGVLQHKAEL 315 Query: 189 RQIFIDK-----KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 + Y+ Q++ ++ E + ++ A +T LA E L + Sbjct: 316 LGAKYPHITFATGVLEYLAQKISSNVRVLEGALTRLFAFADLVRREVTVDLAKECLTDVL 375 Query: 244 QC 245 + Sbjct: 376 RA 377 >gi|163745035|ref|ZP_02152395.1| chromosomal replication initiation protein [Oceanibulbus indolifex HEL-45] gi|161381853|gb|EDQ06262.1| chromosomal replication initiation protein [Oceanibulbus indolifex HEL-45] Length = 453 Score = 98.7 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 36/250 (14%), Positives = 82/250 (32%), Gaps = 32/250 (12%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANI 83 QL + P S D+ +V E A + L G G GK+ L + Sbjct: 107 QLSTA-PLDPRFSFDNFVVGKPNELAHAAARRVAEGGPVTFNPLFLYGGVGLGKTHLMHA 165 Query: 84 WSDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFND 123 + + R L + + + ++++D+ + D Sbjct: 166 IARELHERRPDMNVLYLSAEQFMYRFVQALRDRKMMDFKEIFRSVDVLMVDDVQFIAGKD 225 Query: 124 ---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 + FH N++ ++++A P + SRL+ +V + D + Sbjct: 226 STQEEFFHTFNALVDQHKQIIISADRAPGEIKDLEDRVKSRLQCGLIVDLHPTDYELRLG 285 Query: 181 VIVKMFA-DRQ----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235 ++ R+ + + + ++ R+ ++ E + ++ A G I L Sbjct: 286 ILQSKVEVQRKTYPDLEVADGVLEFLAHRITSNVRVLEGALTRLFAFASLVGREIDMGLT 345 Query: 236 AEVLKETQQC 245 + L + + Sbjct: 346 QDCLADVLRA 355 >gi|269793359|ref|YP_003312814.1| chromosomal replication initiator protein DnaA [Sanguibacter keddieii DSM 10542] gi|269095544|gb|ACZ19980.1| chromosomal replication initiator protein DnaA [Sanguibacter keddieii DSM 10542] Length = 490 Score = 98.7 bits (245), Expect = 7e-19, Method: Composition-based stats. Identities = 37/234 (15%), Positives = 83/234 (35%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD----K 87 + ++ S+ A + P+ + + G SG GK+ L + Sbjct: 151 NPKYLFETFVIGSSNRFAHAAAVAVAEAPAKAYNPLFIYGDSGLGKTHLLHAIGHYAYNL 210 Query: 88 SRSTRFSNIAKS------LDSILIDTRKP----------VLLEDIDLLDFND---TQLFH 128 R + ++SI + +L++DI L + + FH Sbjct: 211 YPGVRVKYVNSEEFTNDFINSIRDEKAGAFQRRYREVDFLLIDDIQFLQGKEQTMEEFFH 270 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H + +++T+ P L SR + + + PD + ++ K + Sbjct: 271 TFNTLHNANKQVVITSDLPPKQLNGFEDRLRSRFEWGLITDVQPPDLETRIAILRKKASG 330 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ + YI ++ ++ E + ++ A + +LA VLK+ Sbjct: 331 ERLAAPDDVLEYIASKISSNIRELEGALIRVTAFANLNRQQVDLALAEIVLKDL 384 >gi|114326825|ref|YP_743982.1| chromosomal replication initiation protein [Granulibacter bethesdensis CGDNIH1] gi|114314999|gb|ABI61059.1| chromosomal replication initiator protein dnaA [Granulibacter bethesdensis CGDNIH1] Length = 525 Score = 98.7 bits (245), Expect = 7e-19, Method: Composition-based stats. Identities = 34/237 (14%), Positives = 78/237 (32%), Gaps = 28/237 (11%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLANIWS---DKSR 89 S + +V E A P+ + L G G GK+ L + + ++ Sbjct: 191 RFSFETFVVGKPNEFAYACARRVAESPASPGFNPLFLYGGVGLGKTHLMHAIAWELNRPG 250 Query: 90 STRFSNIAKSLDSILIDTRKPV------------------LLEDIDLL---DFNDTQLFH 128 S S + + + +++D+ L D + FH Sbjct: 251 RPPVSVAYMSAEKFMYRFIAAIRSQSTMEFKEELRSVDVLMVDDLQFLIGKDNTQEEFFH 310 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++ ++++A P L +RL V + + ++ Sbjct: 311 TFNALVDAGKQIVVSADKSPSDLSGLEDRLRTRLGCGMVADLHATTFELRISILEAKVQK 370 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 + + K+ ++ ++ ++ E ++++ A G +T A EVL + + Sbjct: 371 AGVEVSPKVLEFLAHKITSNVRELEGALNRLIAHANLFGRALTLETAQEVLHDILKA 427 >gi|56477034|ref|YP_158623.1| chromosomal replication initiation protein [Aromatoleum aromaticum EbN1] gi|71151792|sp|Q5P4P0|DNAA_AROAE RecName: Full=Chromosomal replication initiator protein DnaA gi|56313077|emb|CAI07722.1| Chromosomal replication iniciator protein DnaA [Aromatoleum aromaticum EbN1] Length = 481 Score = 98.7 bits (245), Expect = 7e-19, Method: Composition-based stats. Identities = 40/234 (17%), Positives = 88/234 (37%), Gaps = 26/234 (11%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLAN-----IWSDKSR 89 + D L+ A + A P + + G G GK+ L + ++ R Sbjct: 150 FTFDTLVTGRANDLARAAAMQVAQNPGTSYNPLFVYGGVGLGKTHLVHAIGNAVYRHNPR 209 Query: 90 ST-RFSNIAKSLDSILID--------------TRKPVLLEDI---DLLDFNDTQLFHIIN 131 + R+ ++ ++ + +L++DI + + + FH N Sbjct: 210 AVIRYVHVEDYYADVVRAYQQKSFDAFKRYYRSLDLLLIDDIQFFNNKNRTQEEFFHAFN 269 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 ++ + +++T T+P L SR V+I P+ + ++ K ++ Sbjct: 270 ALTEARKQIVITCDTYPKDIQGLEDRLISRFDWGLTVQIEPPELEMRVAILQKKAEALRV 329 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 + +A I + + ++ E ++K+ A G GIT +A + LK+ Sbjct: 330 DLHDDVAFLIAKNLRSNVRELEGALNKVVAFARFHGRGITLEVAKDALKDLLNA 383 >gi|159026644|emb|CAO86578.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 444 Score = 98.7 bits (245), Expect = 7e-19, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 77/233 (33%), Gaps = 28/233 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD----- 86 + +V A + P R + L G G GK+ L Sbjct: 107 NPKYNFSRFVVGPTNRMAHAAALAVAELPGREFNPLFLCGGVGLGKTHLMQAIGHYRLEL 166 Query: 87 --KSRSTRFSNIAKSLDSILIDTRKP-------------VLLEDIDLLDFND---TQLFH 128 +SR S + D I + +L++D+ ++ + + FH Sbjct: 167 YPQSRVFYVSTEQFTNDLITAIRQDSMESFRNHYRHADILLVDDLQFIEGKEYTQEEFFH 226 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 N++H+ +++ + P L D L SR V I PD + ++ K Sbjct: 227 TFNTLHEAGKQVVLASDRLPKQIP-SLQDRLISRFSMGLVADIQAPDIETRMAILQKKAE 285 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + +++ YI ++ E + + G+ +T A VL Sbjct: 286 YENLRLPREVIEYIALNYTSNIRELEGALIRATTYISISGLPMTVENIAPVLN 338 >gi|110807608|ref|YP_691128.1| chromosomal replication initiation protein [Shigella flexneri 5 str. 8401] gi|110617156|gb|ABF05823.1| chromosomal replication initiation protein [Shigella flexneri 5 str. 8401] Length = 443 Score = 98.7 bits (245), Expect = 7e-19, Method: Composition-based stats. Identities = 40/240 (16%), Positives = 84/240 (35%), Gaps = 37/240 (15%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + + D+ + + + A P + L G +G GK+ L + I + Sbjct: 109 VNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 168 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFNDTQLFHIINSIHQYDS 138 K + ++ ++ + +E+ +D L +D Q F I N + + Sbjct: 169 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFAIKNDLRKS-- 226 Query: 139 SLLMTARTFPVSWGVCLPD----------------LCSRLKAATVVKISLPDDDFLEKVI 182 + F W V L SR V I P+ + ++ Sbjct: 227 ----FSTPFTPCWKVSTDHSHLGSLFERDNGVEDRLKSRFGWGLTVAIEPPELETRVAIL 282 Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +K + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 283 MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 342 >gi|325677520|ref|ZP_08157184.1| replication initiation protein DnaA [Rhodococcus equi ATCC 33707] gi|325551767|gb|EGD21465.1| replication initiation protein DnaA [Rhodococcus equi ATCC 33707] Length = 524 Score = 98.7 bits (245), Expect = 7e-19, Method: Composition-based stats. Identities = 35/236 (14%), Positives = 85/236 (36%), Gaps = 28/236 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91 + D ++ ++ A + P+R + + G SG GK+ L + + Sbjct: 186 NAKYTFDTFVIGASNRFAHAAAVAIAEAPARAYNPLFIWGASGLGKTHLLHA-AGHYAQR 244 Query: 92 RFSNI---AKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLF 127 F + S + D + L++DI ++ + + F Sbjct: 245 LFPGLRVKYVSTEEFTNDFINSLRDDRKVAFKRRYRETDILLVDDIQFIEGKEGIQEEFF 304 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++H + +++++ P L +R + + + P+ + ++ K Sbjct: 305 HTFNTLHNANKQIVVSSDRPPKQLATLEERLRTRFEWGLITDVQPPELETRIAILSKKAR 364 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 ++ + + I R+ER++ E + ++ A + LA VL++ Sbjct: 365 MDRLDVPHDVLELIASRIERNIRELEGALIRVTAFASLNRQALDLKLAEVVLRDLM 420 >gi|167759577|ref|ZP_02431704.1| hypothetical protein CLOSCI_01934 [Clostridium scindens ATCC 35704] gi|167662804|gb|EDS06934.1| hypothetical protein CLOSCI_01934 [Clostridium scindens ATCC 35704] Length = 461 Score = 98.7 bits (245), Expect = 7e-19, Method: Composition-based stats. Identities = 42/246 (17%), Positives = 85/246 (34%), Gaps = 41/246 (16%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSD----- 86 + D +V A + P + + G G GK+ L + + Sbjct: 114 NPKYTFDTFVVGGNNNFAHAASLAVAESPGEVYNPLFIYGGVGLGKTHLMHSIAHFILDK 173 Query: 87 ----------------------KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND- 123 K+ T + A S +L++DI + + Sbjct: 174 NAKKKVLYVTSETFTNELIEALKNGRTAGNESAMSKFRDKYRNNDVLLIDDIQFIIGKES 233 Query: 124 --TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 + FH N +H +++++ P L +R + + IS PD + + Sbjct: 234 TQEEFFHTFNHLHTSGKQIIISSDKPPKDIETLEARLRTRFEWGLIADISAPDYETRMAI 293 Query: 182 IVKMFADRQIF---IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG---ITRSLA 235 + K + I + + YI + ++ ++ E ++K+ +AL + I SLA Sbjct: 294 LQKKIELDHLEKYNIPRDVLQYIAENIKTNIRELEGSLNKL--IALYKLNNNDVIDISLA 351 Query: 236 AEVLKE 241 +E LK+ Sbjct: 352 SEALKD 357 >gi|332668533|ref|YP_004451540.1| chromosomal replication initiator protein DnaA [Cellulomonas fimi ATCC 484] gi|332337570|gb|AEE44153.1| chromosomal replication initiator protein DnaA [Cellulomonas fimi ATCC 484] Length = 500 Score = 98.7 bits (245), Expect = 7e-19, Method: Composition-based stats. Identities = 41/256 (16%), Positives = 91/256 (35%), Gaps = 27/256 (10%) Query: 14 DKQKNDQPKNKEE-QLFFSFPRCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVIL 69 D +D+P Q + ++ S+ A + P+ + + Sbjct: 139 DPAVDDRPLPPGRKQAAEPARLNPKYQFETFVIGSSNRFAHAAAVAVAEAPAKAYNPLFI 198 Query: 70 VGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTRKPV- 111 G SG GK+ L + S++ + ++I++ + V Sbjct: 199 YGDSGLGKTHLLHAIGHYAYNLYPGVRVRYVNSEEFTNDFINSISEGKAGAFQRRYREVD 258 Query: 112 --LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 L++DI L + + FH N++H + +++T+ P + SR + Sbjct: 259 VLLIDDIQFLQGKEQTMEEFFHTFNTLHNANKQVVITSDLPPKQLNGFEDRMRSRFEWGL 318 Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 + + PD + ++ K ++ + YI ++ ++ E + ++ A Sbjct: 319 ITDVQPPDLETRIAILRKKAGSERLQAPPDVLEYIASKISTNIRELEGALIRVTAFANLN 378 Query: 227 GMGITRSLAAEVLKET 242 + SLA VLK+ Sbjct: 379 RQQVDLSLAEIVLKDL 394 >gi|213027208|ref|ZP_03341655.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 168 Score = 98.7 bits (245), Expect = 7e-19, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 53/133 (39%), Gaps = 13/133 (9%) Query: 64 SRVVILVGPSGSGKSCLANIWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLE 114 S + L G+G+S L + + + + + K + ++ V ++ Sbjct: 35 SGYIYLWAREGAGRSHLLHAACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCID 94 Query: 115 DIDLLDFNDT---QLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 +I+ + ++ +F + N I + LL+T P + LPDL SRL + K+ Sbjct: 95 NIECVAGDELWEMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKL 154 Query: 171 SLPDDDFLEKVIV 183 D+ + + Sbjct: 155 QPLSDEDKLQALQ 167 >gi|83950590|ref|ZP_00959323.1| chromosomal replication initiation protein [Roseovarius nubinhibens ISM] gi|83838489|gb|EAP77785.1| chromosomal replication initiation protein [Roseovarius nubinhibens ISM] Length = 468 Score = 98.7 bits (245), Expect = 7e-19, Method: Composition-based stats. Identities = 35/244 (14%), Positives = 82/244 (33%), Gaps = 31/244 (12%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANI--WSDK 87 P D +V E A + L G G GK+ L + W + Sbjct: 127 PLDPRFKFDTFVVGKPNELAHAAAKRVAEGGPVTFNPLFLYGGVGLGKTHLMHAIAWELQ 186 Query: 88 SRSTRFSNIAKSLDS------------------ILIDTRKPVLLEDIDLLDFND---TQL 126 + + + S + + + ++++D+ + D + Sbjct: 187 EQQPGLNVVYLSAEQFMYRFVQALRERKMMDFKEMFRSVDVLMVDDVQFIAGKDSTQEEF 246 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV-KM 185 FH N++ ++++A P + SRL+ VV + + + ++ K+ Sbjct: 247 FHTFNALVDQRKQIIISADCAPGEIENLEERIRSRLQCGLVVDLHPTNYELRLGILQSKV 306 Query: 186 FADRQ----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 R + + + ++ R+ +++ E + ++ A G IT L + L + Sbjct: 307 EYYRGQYPDLMLADGVLEFLAHRITKNVRVLEGALTRLFAFASLVGQEITLELTQDCLAD 366 Query: 242 TQQC 245 + Sbjct: 367 VLRA 370 >gi|88608587|ref|YP_506152.1| chromosomal replication initiator protein DnaA [Neorickettsia sennetsu str. Miyayama] gi|88600756|gb|ABD46224.1| chromosomal replication initiator protein DnaA [Neorickettsia sennetsu str. Miyayama] Length = 474 Score = 98.7 bits (245), Expect = 7e-19, Method: Composition-based stats. Identities = 40/270 (14%), Positives = 98/270 (36%), Gaps = 35/270 (12%) Query: 11 FVPDKQKNDQPKNKEEQLFFSFPRCLGISR--DDLLVHSAIEQAV-------RLIDSWPS 61 FV K +++ + + + SR D +V + E A ++ S Sbjct: 110 FVKSKISSEKGRFDRGSFSENLSSSIDRSRTFDSFVVGKSNELAFTASKRVAEAVELPIS 169 Query: 62 WPSRVVILVGPSGSGKSCLAN--IWSDKSRSTRFSNIAKSLDSI---------------- 103 + + L G G GK+ L + +W K+ I S + Sbjct: 170 GSNP-LFLYGGVGLGKTHLMHAIVWHIKANYADRRVIYLSAEKFMHKYITALKNKDMMSF 228 Query: 104 --LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158 + + ++++D+ + + + FH N++ + + L+++A P + Sbjct: 229 KQIFRSVDVLMVDDVQFISGKESTQEEFFHTFNALIEQNKQLVISADRSPSDLQGVEERI 288 Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFAD--RQIFIDKKLAAYIVQRMERSLVFAEKLV 216 SRL V I+ + ++ + + KK+ ++ + + ++ E + Sbjct: 289 QSRLSWGLVADINQTTFELRVGILESKLEQMKSDVVVPKKVVEFMARNIVSNVRELEGAL 348 Query: 217 DKMDNLALSRGMGITRSLAAEVLKETQQCD 246 +K+ + G +T A ++L + + + Sbjct: 349 NKVIAHSEITGSVVTVDSAKDLLADILRTN 378 >gi|217968466|ref|YP_002353700.1| chromosomal replication initiation protein [Thauera sp. MZ1T] gi|217505793|gb|ACK52804.1| chromosomal replication initiator protein DnaA [Thauera sp. MZ1T] Length = 500 Score = 98.7 bits (245), Expect = 7e-19, Method: Composition-based stats. Identities = 40/263 (15%), Positives = 93/263 (35%), Gaps = 33/263 (12%) Query: 16 QKNDQPKNKEEQLF--FSFPRC-----LGISRDDLLVHSAIEQAVRLIDSWPSWPS---R 65 ++ P++ + + D L+ A + A P Sbjct: 140 RRAAAPRSHSSEPSSGLDLAYEKTRLNPDFTFDTLVTGRANDLARAAAMQVAQNPGTSYN 199 Query: 66 VVILVGPSGSGKSCLAN-----IWSDKSRST-RFSNIAKSLDSILID------------- 106 + + G G GK+ L + ++ R+ R+ ++ ++ Sbjct: 200 PLFVYGGVGLGKTHLVHAIGNAVFRHNPRAVIRYVHVEDYYADVVRAYQQKSFDAFKRYY 259 Query: 107 -TRKPVLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 + ++++DI + + + FH N++ + +++T T+P L SR Sbjct: 260 RSLDMLIIDDIQFFNNKNRTQEEFFHAFNALTEARKQIVITCDTYPKDIQGLEDRLISRF 319 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 V+I P+ + ++ K ++ +D +A I + + ++ E ++K+ Sbjct: 320 DWGLTVQIEPPELEMRVAILKKKAEALRVLVDDDVAFLIAKNLRSNVRELEGALNKVVAY 379 Query: 223 ALSRGMGITRSLAAEVLKETQQC 245 A G I +A E LK+ Sbjct: 380 ARFHGRQIGLEVAKEALKDLLHA 402 >gi|317401672|gb|EFV82297.1| chromosomal replication initiator protein dnaA [Achromobacter xylosoxidans C54] Length = 372 Score = 98.3 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 83/232 (35%), Gaps = 27/232 (11%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIW-----SDKSR 89 ++ ++ + A + A P + L G G GK+ L + + + Sbjct: 40 LTFENFVTGKANQLARAAALQVAENPGTSYNPLFLYGGVGLGKTHLIHAIGNAMVAAGTG 99 Query: 90 STRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFNDTQLFHIINSIHQY------ 136 A S ++ + +D +DLL +D Q F N + Sbjct: 100 VRVRYVHADQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKNRTQEEFFYAFE 159 Query: 137 -----DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 +++T+ T+P L SR + V I P+ + ++++ + Sbjct: 160 AMVAQRKQIIITSDTYPKELSGIDSRLISRFDSGLTVAIEPPELEMRVAILLRKAESEGV 219 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI-TRSLAAEVLKET 242 + +++A +I + + ++ E + K+ A G + T + E LK+ Sbjct: 220 PMPEEVAFFIAKHLRSNVRELEGALRKVLAYARFHGRDVLTVDVCKEALKDL 271 >gi|119896293|ref|YP_931506.1| chromosomal replication initiation protein [Azoarcus sp. BH72] gi|166201859|sp|A1K1B4|DNAA_AZOSB RecName: Full=Chromosomal replication initiator protein DnaA gi|119668706|emb|CAL92619.1| chromosomal replication initiator protein [Azoarcus sp. BH72] Length = 480 Score = 98.3 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 86/234 (36%), Gaps = 26/234 (11%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDKS------ 88 + D L+ A + A P + + G G GK+ L + + Sbjct: 149 FTFDTLVTGRANDLARAAAMQVAQNPGTSYNPLFVYGGVGLGKTHLVHAIGNAVYRHNPR 208 Query: 89 RSTRFSNIAKSLDSILID--------------TRKPVLLEDI---DLLDFNDTQLFHIIN 131 R+ ++ ++ + ++++DI + + + FH N Sbjct: 209 MVIRYVHVEDYYADVVRAYQQKSFDAFKRYYRSLDMLIIDDIQFFNNKNRTQEEFFHAFN 268 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 ++ + +++T T+P L SR V+I P+ + ++ K ++ Sbjct: 269 ALTEAKKQIVITCDTYPKDIQGLEDRLISRFDWGLTVQIEPPELEMRVAILQKKAEALRV 328 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 +D +A I + + ++ E ++K+ A G GI+ +A E LK+ Sbjct: 329 SVDDDVAFLIAKNLRSNVRELEGALNKVVAYARFHGRGISLEVAKEALKDLLHA 382 >gi|89069837|ref|ZP_01157172.1| chromosomal replication initiation protein [Oceanicola granulosus HTCC2516] gi|89044638|gb|EAR50754.1| chromosomal replication initiation protein [Oceanicola granulosus HTCC2516] Length = 452 Score = 98.3 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 33/242 (13%), Positives = 76/242 (31%), Gaps = 31/242 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRST 91 + D +V A + L G +G GK+ L + + R Sbjct: 113 EERYTFDTFVVGKPNALAHAAARRVAEGGPVAYNPLFLYGGNGLGKTHLMHAIAHDMRQN 172 Query: 92 R--FSNIAKSLDSI------------------LIDTRKPVLLEDIDLLDFND---TQLFH 128 R + S D + ++++D+ + D + FH Sbjct: 173 RPELDVLYLSADQFMYRFVTALRERKMMDFKHFFRSVDVLMVDDVQFIAGKDSTQEEFFH 232 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++ ++++A P + SRL + VV + D + ++ Sbjct: 233 TFNALADAGKQIVISADCAPGEIRDLENRISSRLASGLVVDLHPTDYELRLGILQSKVEQ 292 Query: 189 RQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 + + + + ++ R+ ++ E + ++ A G I L + L + Sbjct: 293 YRSQHPELVVADGVLEFLAHRISNNVRVLEGSLTRLFAFASLVGKEINLELTQDCLADIL 352 Query: 244 QC 245 + Sbjct: 353 RA 354 >gi|299768251|ref|YP_003730277.1| chromosomal replication initiation protein [Acinetobacter sp. DR1] gi|298698339|gb|ADI88904.1| chromosomal replication initiation protein [Acinetobacter sp. DR1] Length = 468 Score = 98.3 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 46/268 (17%), Positives = 97/268 (36%), Gaps = 38/268 (14%) Query: 5 KEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLID------- 57 KE S P PK +++L + + + + A Sbjct: 108 KEPESVSSPHANSVVNPKTSKKKLL-----NPQFTFSLFVEGRSNQMAAETCRKVLTQLG 162 Query: 58 SWPSWPSRVVILVGPSGSGKSCLANI-----WSDKSRSTRFSNIAKSLDSILIDTR---- 108 + P + L GP+G GK+ L K + ++S + + Sbjct: 163 ASQHNP---LFLYGPTGLGKTHLMQAVGNALLQAKPNARVMYMTSESFVQDFVSSLQKGK 219 Query: 109 -----------KPVLLEDIDLLDFNDTQL---FHIINSIHQYDSSLLMTARTFPVSWGVC 154 +L++DI LL + L F+ N++ +++T+ +P Sbjct: 220 VEEFKKNCRSLDLLLVDDIHLLAGKEASLVEFFYTFNALLDESKQIILTSDRYPKELTEL 279 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 P L SR V + PD + ++++K + + + + A +I Q++ ++ E Sbjct: 280 DPRLVSRFSWGLSVGVEPPDIETRIEILLKKAENSGVDLPRNCALFIAQQVVANVRELEG 339 Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKET 242 ++K+ ++ +G I + E LK+ Sbjct: 340 ALNKVVAISRFKGAPIDLDVVRESLKDV 367 >gi|144900240|emb|CAM77104.1| chromosomal replication initiator protein DnaA [Magnetospirillum gryphiswaldense MSR-1] Length = 458 Score = 98.3 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 34/238 (14%), Positives = 83/238 (34%), Gaps = 28/238 (11%) Query: 35 CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS 90 + + +V AVR+ ++ + L G G GK+ L + + R Sbjct: 124 DPRFTFKNFVVGKPNEFAHAAAVRVAEATAV-SFNPLFLYGGVGLGKTHLMHAIAHHIRE 182 Query: 91 ----------------TRFSNIAKSLDSILIDTR----KPVLLEDIDLLDFND---TQLF 127 RF +S D++ + ++++D+ + D + F Sbjct: 183 HNPARRVLYLSAEKFMYRFIRALRSQDTMSFKEQFRSVDVLMVDDVQFIAGKDATQEEFF 242 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ ++++A P L SRL + V + + ++ Sbjct: 243 HTFNALVDQGRQIVISADKSPSDLEGMEDRLRSRLNSGLVADLHATTYELRLGILQSKAE 302 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 + +K+ ++ ++ ++ E ++++ + G IT +VL + + Sbjct: 303 QMGAVVPQKVMEFLAHKITSNVRELEGALNRVIAHSQLVGRSITLESTQDVLHDLLKA 360 >gi|254435499|ref|ZP_05049006.1| chromosomal replication initiator protein DnaA [Nitrosococcus oceani AFC27] gi|207088610|gb|EDZ65882.1| chromosomal replication initiator protein DnaA [Nitrosococcus oceani AFC27] Length = 452 Score = 98.3 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 32/231 (13%), Positives = 78/231 (33%), Gaps = 26/231 (11%) Query: 38 ISRDDLLVHSAI---EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI----------- 83 + D + + A + P + + G G GK+ L + Sbjct: 121 YTFDSFVEGKSNQLPRAASHQVAENPGSAYNPLFIYGGVGLGKTHLMHAVGNYIRSRNPS 180 Query: 84 ------WSDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFHIIN 131 S++ + + + + + V L++DI + + F+ N Sbjct: 181 ARVVYLHSEQFVAEMIKALQLNAINEFKTRYRSVDILLIDDIQFFAGKERSQEEFFYTFN 240 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 ++ + +++T FP L SR V + P+ + +++ + I Sbjct: 241 TLLEVQHQIILTCDRFPKEVNGLEERLTSRFGWGLTVAVEPPELETRVAILMNKASIENI 300 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + +A ++ + + ++ E + ++ + IT L E LK+ Sbjct: 301 ILSDDVAFFLGRLIYSNIRELEGALRRVIAYSRFTHRPITMELTREALKDL 351 >gi|81251045|gb|ABB69855.1| DNA replication initiator protein [Nitrosospira sp. 9SS1] Length = 476 Score = 98.3 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 83/234 (35%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGPSGSGKSCLANIW------S 85 + + + A + A + P + G G GK+ L Sbjct: 142 NPSFTFNTFVTGKANQLARAGAIQVAERPGVAYNPFFIYGGVGLGKTHLIQAIGNFVVEH 201 Query: 86 DKSRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128 + + R+ + + + ++ + +L++DI + F+ Sbjct: 202 NPAAKVRYIHSEQYVSDVVRAYQHKAFDEFKRYYHSLDLLLIDDIQFFGGKNRTQEEFFY 261 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++ + +++T ++P L SR V + P+ + +++K Sbjct: 262 AFNALIEAHKQVIITCDSYPKEIAGMEERLISRFGWGLTVAVEPPELEMRVAILLKKALM 321 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 I +D+ +A +I + + ++ E + ++ + G +T LA E LK+ Sbjct: 322 EDIILDESVAFFIAKHIRSNVRELEGALKRVVAYSRFTGHALTLDLAREALKDL 375 >gi|117927212|ref|YP_871763.1| chromosomal replication initiator protein DnaA [Acidothermus cellulolyticus 11B] gi|117647675|gb|ABK51777.1| chromosomal replication initiator protein DnaA [Acidothermus cellulolyticus 11B] Length = 480 Score = 98.3 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 87/235 (37%), Gaps = 28/235 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWS--DKSR 89 + + ++ ++ A + P++ + + G SG GK+ L + S Sbjct: 142 NPKYTFETFVIGASNRFAHAAAFAAAESPAKAYNPLFIYGDSGLGKTHLLHAIGHYALSL 201 Query: 90 STRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFH 128 S + D + L++DI L+ + + FH Sbjct: 202 FGNIRVRYVSSEEFTNDFINSIRDGKAEGFRRRYRDVDVLLVDDIQFLENKEQTQEEFFH 261 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 N++H + +++++ P V L D L +R + + + P+ + ++ K A Sbjct: 262 TFNTLHNANKQIVISSDRAPKQL-VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAA 320 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I ++ YI ++ ++ E + ++ A + +LA VLK+ Sbjct: 321 QEGLDIPNEVLEYIASKISSNIRELEGALIRISAFANLNRQRVDLALAEVVLKDL 375 >gi|312137515|ref|YP_004004851.1| chromosome replication initiator protein dnaa [Rhodococcus equi 103S] gi|311886854|emb|CBH46162.1| chromosome replication initiator protein DnaA [Rhodococcus equi 103S] Length = 524 Score = 98.3 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 35/236 (14%), Positives = 85/236 (36%), Gaps = 28/236 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91 + D ++ ++ A + P+R + + G SG GK+ L + + Sbjct: 186 NAKYTFDTFVIGASNRFAHAAAVAIAEAPARAYNPLFIWGASGLGKTHLLHA-AGHYAQR 244 Query: 92 RFSNI---AKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLF 127 F + S + D + L++DI ++ + + F Sbjct: 245 LFPGLRVKYVSTEEFTNDFINSLRDDRKVAFKRRYRETDILLVDDIQFIEGKEGIQEEFF 304 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++H + +++++ P L +R + + + P+ + ++ K Sbjct: 305 HTFNTLHNANKQIVVSSDRPPKQLATLEERLRTRFEWGLITDVQPPELETRIAILSKKAR 364 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 ++ + + I R+ER++ E + ++ A + LA VL++ Sbjct: 365 MDRLDVPHDVLELIASRIERNIRELEGALIRVTAFASLNRQALDLKLAEVVLRDLM 420 >gi|149202937|ref|ZP_01879908.1| chromosomal replication initiation protein [Roseovarius sp. TM1035] gi|149143483|gb|EDM31519.1| chromosomal replication initiation protein [Roseovarius sp. TM1035] Length = 448 Score = 98.3 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 35/244 (14%), Positives = 81/244 (33%), Gaps = 31/244 (12%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDS-WPSWP--SRVVILVGPSGSGKSCLANIWSDKSR 89 P + D +V E A P + L G G GK+ L + + + + Sbjct: 107 PLDERFTFDSFVVGKPNELAHAAARRVAECGPVTFNPLFLYGGVGLGKTHLMHAIAWELK 166 Query: 90 STRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFND---TQL 126 TR L + + + ++++D+ + D + Sbjct: 167 ITRPDLNVVYLSAEQFMYRFVQALRDRKMMDFKSVFRSVDVLMVDDVQFIAGKDSTQEEF 226 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH N++ + ++++A P + SRL+ VV + D + ++ Sbjct: 227 FHTFNALVDQNKQIVISADRAPGEIANLEERIKSRLQCGLVVDLHPTDYELRLGILQSKV 286 Query: 187 ADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + + + + ++ R+ ++ E + ++ A IT L + L + Sbjct: 287 DRYRAQYPDLALSDGVLEFLAHRISTNVRVLEGAMTRLFAFASLVRKPITLELTQDCLAD 346 Query: 242 TQQC 245 + Sbjct: 347 VLRA 350 >gi|171462833|ref|YP_001796946.1| chromosomal replication initiator protein DnaA [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192371|gb|ACB43332.1| chromosomal replication initiator protein DnaA [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 474 Score = 98.3 bits (244), Expect = 9e-19, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 84/234 (35%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWS-----D 86 ++ + + A + A + P + L G G GK+ L + + Sbjct: 140 NPNLTFETFVTGKANQLARAASIQVAHNPGTSYNPMFLYGGVGLGKTHLIHAIGNHLLKE 199 Query: 87 KSRST-RFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128 K + R+ + + + ++ + +L++DI + F+ Sbjct: 200 KPNARIRYIHAEQYVSDVVRAYQQKAFDRFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFY 259 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ S +++T T+P L SR + V I P+ + +++K Sbjct: 260 AFEALLSNKSQVIITGDTYPKEMAGIDDRLISRFDSGLTVAIEPPELEMRVAILMKKAIG 319 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 I + + +A ++ + + ++ E + K+ G +T +A LK+ Sbjct: 320 EGIPMSEDVAFFVAKHLRSNVRELEGALRKILAFVRFHGREVTIEVARTALKDL 373 >gi|170076637|ref|YP_001733275.1| chromosomal replication initiation protein [Synechococcus sp. PCC 7002] gi|226735857|sp|B1XKQ0|DNAA_SYNP2 RecName: Full=Chromosomal replication initiator protein DnaA gi|169884306|gb|ACA98019.1| chromosomal replication initiator protein DnaA [Synechococcus sp. PCC 7002] Length = 449 Score = 98.3 bits (244), Expect = 9e-19, Method: Composition-based stats. Identities = 47/272 (17%), Positives = 95/272 (34%), Gaps = 38/272 (13%) Query: 2 NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPS 61 N + SF+ ++ +P K +L + +V A + Sbjct: 85 NTLAATQSFYSSRSGQSTRPGKKTPEL------NSKYTFSRFVVGPTNRMAHAAALAVAE 138 Query: 62 WPSR---VVILVGPSGSGKSCLANIWSD-----KSRSTRFSNIAKSLDSILI-------- 105 P R ++L G G GK+ L + + F + + LI Sbjct: 139 SPGRDFNPLVLCGGVGLGKTHLMQAIGHYRLDTQPDAKIFYVSTEQFTNDLIVAIRKDSL 198 Query: 106 -------DTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 T +L++DI ++ + + F+ N++H+ +++ + P Sbjct: 199 QTFREHYRTADILLVDDIQFIEGKEYTQEEFFYTFNTLHEAGKQIVLASDRPPHQIPGLQ 258 Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---RSLVFA 212 L SR + I PD + ++ K + + + + YI R L A Sbjct: 259 QRLSSRFSMGLIADIQPPDLETRMAILQKKAEAENLNLSRSVIEYIATHYTANIRELEGA 318 Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 L+ + ++A+S G+ +T A +L T + Sbjct: 319 --LLRAVTHIAIS-GLPMTVENLAPILNPTVE 347 >gi|312149106|gb|ADQ29177.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi N40] Length = 486 Score = 98.3 bits (244), Expect = 9e-19, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 78/209 (37%), Gaps = 26/209 (12%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRVV---ILVGPSGSGKSCLANIWSDKSRST-- 91 + ++ ++ + A S P + ++ G G GK+ L +K+ Sbjct: 146 RYTFENFIIGPNNKLAYNASLSISKNPGKKYNPCLIYGGVGLGKTHLLQSIGNKTEELHH 205 Query: 92 ---RFSNIAKSLDSILIDTRKP---------------VLLEDIDLLDFND---TQLFHII 130 A++ + +++ K +L++DI L + +LFH Sbjct: 206 NLKILYVTAENFLNEFVESIKTHETKKFKKKYRYLDMLLIDDIHDLQKKEGIQEELFHTF 265 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N++++ + L+ T P L SR V IS P+ + ++ K + Sbjct: 266 NALYEDNKQLVFTCDRSPSELTNFTDRLKSRFTRGLNVDISKPNFELRAAIVEKKAEEDG 325 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 I + K + + Q++ ++ E V K+ Sbjct: 326 INVPKNILNLVAQKVTTNVRDLEAAVTKL 354 >gi|312148000|gb|ADQ30659.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi JD1] Length = 486 Score = 98.3 bits (244), Expect = 9e-19, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 78/209 (37%), Gaps = 26/209 (12%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRVV---ILVGPSGSGKSCLANIWSDKSRST-- 91 + ++ ++ + A S P + ++ G G GK+ L +K+ Sbjct: 146 RYTFENFIIGPNNKLAYNASLSISKNPGKKYNPCLIYGGVGLGKTHLLQSIGNKTEELHH 205 Query: 92 ---RFSNIAKSLDSILIDTRKP---------------VLLEDIDLLDFND---TQLFHII 130 A++ + +++ K +L++DI L + +LFH Sbjct: 206 NLKILYVTAENFLNEFVESIKTHETKKFKKKYRYLDMLLIDDIHDLQKKEGIQEELFHTF 265 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N++++ + L+ T P L SR V IS P+ + ++ K + Sbjct: 266 NALYEDNKQLVFTCDRSPSELTNFTDRLKSRFTRGLNVDISKPNFELRAAIVEKKAEEDG 325 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 I + K + + Q++ ++ E V K+ Sbjct: 326 INVPKNILNLVAQKVTTNVRDLEAAVTKL 354 >gi|223888775|ref|ZP_03623366.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi 64b] gi|223885591|gb|EEF56690.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi 64b] Length = 486 Score = 98.3 bits (244), Expect = 9e-19, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 78/209 (37%), Gaps = 26/209 (12%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRVV---ILVGPSGSGKSCLANIWSDKSRST-- 91 + ++ ++ + A S P + ++ G G GK+ L +K+ Sbjct: 146 RYTFENFIIGPNNKLAYNASLSISKNPGKKYNPCLIYGGVGLGKTHLLQSIGNKTEELHH 205 Query: 92 ---RFSNIAKSLDSILIDTRKP---------------VLLEDIDLLDFND---TQLFHII 130 A++ + +++ K +L++DI L + +LFH Sbjct: 206 NLKILYVTAENFLNEFVESIKTHETKKFKKKYRYLDMLLIDDIHDLQKKEGIQEELFHTF 265 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N++++ + L+ T P L SR V IS P+ + ++ K + Sbjct: 266 NALYEDNKQLVFTCDRSPSELTNFTDRLKSRFTRGLNVDISKPNFELRAAIVEKKAEEDG 325 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 I + K + + Q++ ++ E V K+ Sbjct: 326 INVPKNILNLVAQKVTTNVRDLEAAVTKL 354 >gi|218249778|ref|YP_002374948.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi ZS7] gi|226321746|ref|ZP_03797272.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi Bol26] gi|226735780|sp|B7J203|DNAA_BORBZ RecName: Full=Chromosomal replication initiator protein DnaA gi|218164966|gb|ACK75027.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi ZS7] gi|226232935|gb|EEH31688.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi Bol26] Length = 487 Score = 98.3 bits (244), Expect = 9e-19, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 78/209 (37%), Gaps = 26/209 (12%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRVV---ILVGPSGSGKSCLANIWSDKSRST-- 91 + ++ ++ + A S P + ++ G G GK+ L +K+ Sbjct: 147 RYTFENFIIGPNNKLAYNASLSISKNPGKKYNPCLIYGGVGLGKTHLLQSIGNKTEELHH 206 Query: 92 ---RFSNIAKSLDSILIDTRKP---------------VLLEDIDLLDFND---TQLFHII 130 A++ + +++ K +L++DI L + +LFH Sbjct: 207 NLKILYVTAENFLNEFVESIKTHETKKFKKKYRYLDMLLIDDIHDLQKKEGIQEELFHTF 266 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N++++ + L+ T P L SR V IS P+ + ++ K + Sbjct: 267 NALYEDNKQLVFTCDRSPSELTNFTDRLKSRFTRGLNVDISKPNFELRAAIVEKKAEEDG 326 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 I + K + + Q++ ++ E V K+ Sbjct: 327 INVPKNILNLVAQKVTTNVRDLEAAVTKL 355 >gi|15594782|ref|NP_212571.1| chromosomal replication initiator protein (dnaA) [Borrelia burgdorferi B31] gi|216264677|ref|ZP_03436669.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi 156a] gi|224532482|ref|ZP_03673107.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi WI91-23] gi|226321067|ref|ZP_03796609.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi 29805] gi|461940|sp|P33768|DNAA_BORBU RecName: Full=Chromosomal replication initiator protein DnaA gi|454039|gb|AAA58941.1| DnaA protein [Borrelia burgdorferi] gi|2688358|gb|AAB91515.1| chromosomal replication initiator protein (dnaA) [Borrelia burgdorferi B31] gi|215981150|gb|EEC21957.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi 156a] gi|224512554|gb|EEF82930.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi WI91-23] gi|226233477|gb|EEH32216.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi 29805] Length = 486 Score = 98.3 bits (244), Expect = 9e-19, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 78/209 (37%), Gaps = 26/209 (12%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRVV---ILVGPSGSGKSCLANIWSDKSRST-- 91 + ++ ++ + A S P + ++ G G GK+ L +K+ Sbjct: 146 RYTFENFIIGPNNKLAYNASLSISKNPGKKYNPCLIYGGVGLGKTHLLQSIGNKTEELHH 205 Query: 92 ---RFSNIAKSLDSILIDTRKP---------------VLLEDIDLLDFND---TQLFHII 130 A++ + +++ K +L++DI L + +LFH Sbjct: 206 NLKILYVTAENFLNEFVESIKTHETKKFKKKYRYLDMLLIDDIHDLQKKEGIQEELFHTF 265 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N++++ + L+ T P L SR V IS P+ + ++ K + Sbjct: 266 NALYEDNKQLVFTCDRSPSELTNFTDRLKSRFTRGLNVDISKPNFELRAAIVEKKAEEDG 325 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 I + K + + Q++ ++ E V K+ Sbjct: 326 INVPKNILNLVAQKVTTNVRDLEAAVTKL 354 >gi|77163562|ref|YP_342087.1| chromosomal replication initiator protein, DnaA [Nitrosococcus oceani ATCC 19707] gi|123757965|sp|Q3JF39|DNAA_NITOC RecName: Full=Chromosomal replication initiator protein DnaA gi|76881876|gb|ABA56557.1| chromosomal replication initiator protein, DnaA [Nitrosococcus oceani ATCC 19707] Length = 449 Score = 98.3 bits (244), Expect = 9e-19, Method: Composition-based stats. Identities = 32/231 (13%), Positives = 78/231 (33%), Gaps = 26/231 (11%) Query: 38 ISRDDLLVHSAI---EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI----------- 83 + D + + A + P + + G G GK+ L + Sbjct: 118 YTFDSFVEGKSNQLPRAASHQVAENPGSAYNPLFIYGGVGLGKTHLMHAVGNYIRSRNPS 177 Query: 84 ------WSDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFHIIN 131 S++ + + + + + V L++DI + + F+ N Sbjct: 178 ARVVYLHSEQFVAEMIKALQLNAINEFKTRYRSVDILLIDDIQFFAGKERSQEEFFYTFN 237 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 ++ + +++T FP L SR V + P+ + +++ + I Sbjct: 238 TLLEVQHQIILTCDRFPKEVNGLEERLTSRFGWGLTVAVEPPELETRVAILMNKASIENI 297 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + +A ++ + + ++ E + ++ + IT L E LK+ Sbjct: 298 ILSDDVAFFLGRLIYSNIRELEGALRRVIAYSRFTHRPITMELTREALKDL 348 >gi|149919113|ref|ZP_01907597.1| chromosomal replication initiator protein dnaA [Plesiocystis pacifica SIR-1] gi|149820043|gb|EDM79464.1| chromosomal replication initiator protein dnaA [Plesiocystis pacifica SIR-1] Length = 453 Score = 98.3 bits (244), Expect = 9e-19, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 82/235 (34%), Gaps = 27/235 (11%) Query: 36 LGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLAN---------- 82 D + ++ E A + P + + G G GK+ L + Sbjct: 120 PRYRFDSFIKGASNELAASAAMAASDAPGTRFNPLFIYGGVGLGKTHLLHGIGHELHRKD 179 Query: 83 -----------IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLFH 128 + ++ + +N + +L++DI + D + FH Sbjct: 180 PSLRIVYLSAEHFMNEFVTAVRNNQFDEFRARYRKDCDCLLIDDIQFIAGRDRTMDEFFH 239 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 + N++++ +++T+ P L SRL V + PD + ++ Sbjct: 240 VFNALYEAGKQIVVTSDRVPADMPGMEARLTSRLNWGLVADVQPPDLETRIAIVQAKAER 299 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 + + ++ I + + ++ E + ++ A RG+ I ++ VL + + Sbjct: 300 DGMELPAEVCLTIAELVRSNVRELEGALLRVTAFAQLRGVAIDKAFVESVLGKRR 354 >gi|24114988|ref|NP_709498.1| replication initiation protein DnaA [Shigella flexneri 2a str. 301] gi|24054240|gb|AAN45205.1| replication initiation protein DnaA [Shigella flexneri 2a str. 301] Length = 408 Score = 98.3 bits (244), Expect = 9e-19, Method: Composition-based stats. Identities = 40/240 (16%), Positives = 84/240 (35%), Gaps = 37/240 (15%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWS 85 + + D+ + + + A P + L G +G GK+ L + I + Sbjct: 109 VNVKHTFDNFVEGKSNQLARAAACQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMA 168 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFNDTQLFHIINSIHQYDS 138 K + ++ ++ + +E+ +D L +D Q F I N + + Sbjct: 169 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFAIKNDLRKS-- 226 Query: 139 SLLMTARTFPVSWGVCLPD----------------LCSRLKAATVVKISLPDDDFLEKVI 182 + F W V L SR V I P+ + ++ Sbjct: 227 ----FSTPFTPCWKVSTDHSHLGSLFERDNGVEDRLKSRFGWGLTVAIEPPELETRVAIL 282 Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +K + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 283 MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 342 >gi|327490338|gb|EGF22125.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus sanguinis SK1058] Length = 450 Score = 98.3 bits (244), Expect = 9e-19, Method: Composition-based stats. Identities = 40/274 (14%), Positives = 93/274 (33%), Gaps = 34/274 (12%) Query: 3 LMKEDYSFFVPDKQKNDQPKNKEEQLFF---SFPRCLGISRDDLLVHSAI----EQAVRL 55 + +E+ + P K P+ QL + D+ + A+ + Sbjct: 79 IFEEETNIDTP-KSAVTSPQISTVQLSLPPIDTGLKSKYTFDNFVQGDGNIWAKAAALAV 137 Query: 56 IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI------------ 103 ++ + + + G G GK+ L N ++ K + + Sbjct: 138 SENLAT-TYNPLFIYGGPGLGKTHLLNAIGNQILENIPDARVKYIPAETFINDFLEHLRL 196 Query: 104 --------LIDTRKPVLLEDIDLLDF----NDTQLFHIINSIHQYDSSLLMTARTFPVSW 151 + + +L++DI L + F+ N++H + +++T+ P Sbjct: 197 GEMDSFKKIYRSLDLLLIDDIQSLGGKKVSTQEEFFNTFNALHGENKQIVLTSDRSPDHL 256 Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211 L +R K I+ PD + ++ + Y+ + + ++ Sbjct: 257 DNLEERLVTRFKWGLTQNITPPDFETRIAILRNKIENLDYIFPNDTLEYLAGQFDSNVRD 316 Query: 212 AEKLVDKMDNLALSRG-MGITRSLAAEVLKETQQ 244 E ++ + +A R IT +AAE ++ +Q Sbjct: 317 LEGALNDISLIARVRHLKEITIDIAAEAIRARKQ 350 >gi|327467738|gb|EGF13232.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus sanguinis SK330] Length = 450 Score = 98.3 bits (244), Expect = 9e-19, Method: Composition-based stats. Identities = 40/274 (14%), Positives = 93/274 (33%), Gaps = 34/274 (12%) Query: 3 LMKEDYSFFVPDKQKNDQPKNKEEQLFF---SFPRCLGISRDDLLVHSAI----EQAVRL 55 + +E+ + P K P+ QL + D+ + A+ + Sbjct: 79 IFEEETNIDTP-KSAVTSPQISTVQLSLPPIDTGLKSKYTFDNFVQGDGNIWAKAAALAV 137 Query: 56 IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI------------ 103 ++ + + + G G GK+ L N ++ K + + Sbjct: 138 SENLAT-TYNPLFIYGGPGLGKTHLLNAIGNQILENIPDARVKYIPAETFINDFLEHLRL 196 Query: 104 --------LIDTRKPVLLEDIDLLDF----NDTQLFHIINSIHQYDSSLLMTARTFPVSW 151 + + +L++DI L + F+ N++H + +++T+ P Sbjct: 197 GEMDSFKKIYRSLDLLLIDDIQSLGGKKVSTQEEFFNTFNALHGENKQIVLTSDRSPDHL 256 Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211 L +R K I+ PD + ++ + Y+ + + ++ Sbjct: 257 DNLEERLVTRFKWGLTQNITPPDFETRIAILRNKIENLDYIFPNDTLEYLAGQFDSNVRD 316 Query: 212 AEKLVDKMDNLALSRG-MGITRSLAAEVLKETQQ 244 E ++ + +A R IT +AAE ++ +Q Sbjct: 317 LEGALNDISLIARVRHLKEITIDIAAEAIRARKQ 350 >gi|283457090|ref|YP_003361653.1| DNA replication initiation ATPase [Rothia mucilaginosa DY-18] gi|283133068|dbj|BAI63833.1| ATPase involved in DNA replication initiation [Rothia mucilaginosa DY-18] Length = 564 Score = 98.3 bits (244), Expect = 9e-19, Method: Composition-based stats. Identities = 35/236 (14%), Positives = 82/236 (34%), Gaps = 28/236 (11%) Query: 35 CLGISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR-- 89 + D ++ + A + P + + G SG GK+ L + ++ Sbjct: 221 NPNYTFDTFVIGQSNRFAHASAFAVAEQPGIVYNPLFIYGGSGLGKTHLLHAIGHYTKYL 280 Query: 90 ----STRFSNIAKSLDSILIDTR--------------KPVLLEDIDLLDFND---TQLFH 128 R+ N + + + R +L++DI L + + FH Sbjct: 281 YPNLRVRYVNSEEFTNDFINSIRDDEGSSFKQIYRNVDVLLIDDIQFLAGKEATMEEFFH 340 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N+++ + +++T+ P + SR + V + P+ + ++ K + Sbjct: 341 TFNALYNHQKQIVITSDLPPKQLTGFAERMRSRFGSGLNVDVQPPELETRIAILRKKAQN 400 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG--MGITRSLAAEVLKET 242 + + + YI + ++ E + + A + IT + A LK+ Sbjct: 401 EILPVRDDVMEYIASHVTANIRELEGALIRASAAASMKKPPEPITLAEAETYLKDL 456 >gi|85705685|ref|ZP_01036782.1| chromosomal replication initiation protein [Roseovarius sp. 217] gi|85669675|gb|EAQ24539.1| chromosomal replication initiation protein [Roseovarius sp. 217] Length = 450 Score = 98.3 bits (244), Expect = 9e-19, Method: Composition-based stats. Identities = 37/245 (15%), Positives = 82/245 (33%), Gaps = 33/245 (13%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDS-WPSWP--SRVVILVGPSGSGKSCLANI--WSDK 87 P + D +V E A P + L G G GK+ L + W K Sbjct: 109 PLDERFTFDSFVVGKPNELAHAAARRVAECGPVTFNPLFLYGGVGLGKTHLMHAIAWELK 168 Query: 88 SRSTRFSNIAKSLDSI------------------LIDTRKPVLLEDIDLLDFND---TQL 126 + + + S + + + ++++D+ + D + Sbjct: 169 TTRPDLNVVYLSAEQFMYRFVQALRDRKMMDFKSVFRSVDVLMVDDVQFIAGKDSTQEEF 228 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH N++ + ++++A P + SRL+ VV + D + ++ Sbjct: 229 FHTFNALVDQNKQIVISADRAPGEIANLEERIKSRLQCGLVVDLHPTDYELRLGILQSK- 287 Query: 187 ADRQ------IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 DR + + + ++ R+ ++ E + ++ A IT L + L Sbjct: 288 VDRFRAQYPDLTLHDGVLEFLAHRITTNVRVLEGAMTRLFAFASLVRKPITLELTQDCLA 347 Query: 241 ETQQC 245 + + Sbjct: 348 DVLRA 352 >gi|229818503|ref|YP_002880029.1| chromosomal replication initiator protein DnaA [Beutenbergia cavernae DSM 12333] gi|229564416|gb|ACQ78267.1| chromosomal replication initiator protein DnaA [Beutenbergia cavernae DSM 12333] Length = 489 Score = 98.3 bits (244), Expect = 9e-19, Method: Composition-based stats. Identities = 37/234 (15%), Positives = 85/234 (36%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSR-- 89 + D ++ S+ A + + + G SG GK+ L + ++ Sbjct: 150 NATYTFDTFVIGSSNRFAHAAATAVAEAPAKAYNPLFIYGDSGLGKTHLLHAIGHYAQRL 209 Query: 90 ----STRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDFND---TQLFH 128 + R+ N + + + + + +L++DI L + + FH Sbjct: 210 YPGIAVRYVNSEEFTNDFINSIRDDKAEAFQRRYRSVEVLLVDDIQFLQGKEQTMEEFFH 269 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H + +++T+ P + SR + + I PD + ++ K Sbjct: 270 TFNTLHNANKQVVITSDVAPKYLEGFADRMRSRFEWGLITDIQPPDLETRIAILRKKAGS 329 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ + YI R+ ++ E + ++ A + +LA VLK+ Sbjct: 330 ERLSAPDDVLEYIASRISTNIRELEGALIRVTAFANLNEQQVDLALAEMVLKDL 383 >gi|269217836|ref|ZP_06161690.1| bacterial DnaA protein helix-turn-helix protein [Actinomyces sp. oral taxon 848 str. F0332] gi|269212771|gb|EEZ79111.1| bacterial DnaA protein helix-turn-helix protein [Actinomyces sp. oral taxon 848 str. F0332] Length = 591 Score = 97.9 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 36/234 (15%), Positives = 79/234 (33%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGPSGSGKSCLANIWSD----- 86 + D+ ++ A + P + L SG GK+ L + + Sbjct: 249 NPRYTFDNFVIGDNNRFATATSLAVAESPGTTYNPLFLYSDSGMGKTHLMHAIGNYALNL 308 Query: 87 ----KSRSTRFSNIAKSLDSILIDTRKP-----------VLLEDIDLLDFND---TQLFH 128 K R + + + D + +L++DI + D + FH Sbjct: 309 FPSIKVRYVSAEEFTNAFINSVRDGHQAEFKNQFRTVDILLIDDIQFIGGRDSTVEEFFH 368 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++ + +++T+ P + SR + I P+ + ++ K Sbjct: 369 TFNALTNSNKQIVITSDVSPNLLNGFEERMLSRFNSGVTANIDRPNLETRIAILEKKAHS 428 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + +++ YI M ++ E + ++ A I+ LA +LK+ Sbjct: 429 DGFTVPREVNEYIATHMLTNVREMEGALRRVTAFADLSKQTISLGLAEMILKDL 482 >gi|224534658|ref|ZP_03675230.1| chromosomal replication initiator protein DnaA [Borrelia spielmanii A14S] gi|224513906|gb|EEF84228.1| chromosomal replication initiator protein DnaA [Borrelia spielmanii A14S] Length = 484 Score = 97.9 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 37/209 (17%), Positives = 78/209 (37%), Gaps = 26/209 (12%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRVV---ILVGPSGSGKSCLANIWSDKSRST-- 91 + ++ ++ + A S P + ++ G G GK+ L +K+ Sbjct: 144 RYTFENFIIGPNNKLAYNASLSISKNPGKKYNPCLIYGGVGLGKTHLLQSIGNKTEELHN 203 Query: 92 ---RFSNIAKSLDSILIDTRKP---------------VLLEDIDLLDFND---TQLFHII 130 A++ + +++ K +L++DI L + +LFH Sbjct: 204 NLKILYVTAENFLNEFVESIKTHETKKFKKKYRYLDMLLIDDIHDLQKKEGIQEELFHTF 263 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N++++ + L+ T P L SR V IS P+ + +I K + Sbjct: 264 NALYEDNKQLVFTCDRSPSELTNFTDRLKSRFTRGLNVDISKPNFELRVAIIEKKAEEDG 323 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 I + K + + Q++ ++ E V K+ Sbjct: 324 IKVPKNILNLVAQKVTTNVRDLEAAVTKL 352 >gi|310825634|ref|YP_003957991.1| chromosomal replication initiator protein [Eubacterium limosum KIST612] gi|308737368|gb|ADO35028.1| chromosomal replication initiator protein [Eubacterium limosum KIST612] Length = 449 Score = 97.9 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 36/233 (15%), Positives = 79/233 (33%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIW------- 84 + + ++ A + PS + + G G GK+ L Sbjct: 113 NPKYTFEKFVIGENNRFAHAACVAVSEAPSERYNPLFIYGGVGLGKTHLMQAIGNYILSY 172 Query: 85 ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128 +K + I + + + V L++DI L D + FH Sbjct: 173 APTKKVVYVSCEKFTNEFIDAIQNQNNIDFRNKYRNVDILLIDDIQFLAGKDGTQEEFFH 232 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H+ + +++++ P L SR + + IS P+ + ++ K Sbjct: 233 TFNALHEENKQIVISSDRPPKEIPKLEERLRSRFEMGLITDISAPNFETRIAILRKKAES 292 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I + ++I + ++ E + + + G I A + LK+ Sbjct: 293 YKEEIPNDVLSFIADSIHSNIRELEGALTTVVAYSKLHGEPICLETAKDALKD 345 >gi|167629172|ref|YP_001679671.1| chromosomal replication initiator protein dnaa [Heliobacterium modesticaldum Ice1] gi|226735814|sp|B0TAK8|DNAA_HELMI RecName: Full=Chromosomal replication initiator protein DnaA gi|167591912|gb|ABZ83660.1| chromosomal replication initiator protein dnaa [Heliobacterium modesticaldum Ice1] Length = 443 Score = 97.9 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 42/264 (15%), Positives = 93/264 (35%), Gaps = 35/264 (13%) Query: 10 FFVP--DKQKNDQPKNK----EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW- 62 FF P D ++++ + E + D +V ++ A + Sbjct: 79 FFTPSADSRRSEPSRRPVATEESSPPL---LNPKYTFDTFVVGNSNRFAHAAALAVAEAP 135 Query: 63 --PSRVVILVGPSGSGKSCLANIWSD-------KSRSTRFSNIAKSLDSILI-------- 105 + + G G GK+ L +SR S+ + + I Sbjct: 136 AKAYNPLFVYGGVGLGKTHLMQAIGHFVIEQHPQSRVVYVSSEKFTNELINAIRDDKTVE 195 Query: 106 -----DTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 +L++DI L + + FH N++H+ +++++ P Sbjct: 196 FRNRYRNIDVLLIDDIQFLAGKERTQEEFFHTFNALHESSKQIIISSDRPPKEIPTLEDR 255 Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 L SR + + I+ PD + ++ K + + ++ +I ++ ++ E ++ Sbjct: 256 LRSRFEWGLITDINPPDLETRIAILRKKAILENLDVPNEVMVFIANIIQSNIRELEGALN 315 Query: 218 KMDNLALSRGMGITRSLAAEVLKE 241 ++ A G +T +A E LK Sbjct: 316 RVIAYANLSGKSLTSEVAEEALKN 339 >gi|227514119|ref|ZP_03944168.1| DNA-directed DNA replication initiator protein [Lactobacillus fermentum ATCC 14931] gi|260662538|ref|ZP_05863433.1| chromosomal replication initiator protein DnaA [Lactobacillus fermentum 28-3-CHN] gi|227087490|gb|EEI22802.1| DNA-directed DNA replication initiator protein [Lactobacillus fermentum ATCC 14931] gi|260553229|gb|EEX26172.1| chromosomal replication initiator protein DnaA [Lactobacillus fermentum 28-3-CHN] Length = 438 Score = 97.9 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 39/271 (14%), Positives = 87/271 (32%), Gaps = 38/271 (14%) Query: 4 MKEDYSFFV-PDKQKNDQPKNKEEQLFF--SFPRCLGISRDDLLVHSAIEQAVRLIDSWP 60 ++ DY P P+ Q F P + + + A + Sbjct: 73 IRPDYVLATDPTPLAQTPPRP---QSTFKEETPLNPEYTFQTFIEGRSNMMAYASAFAAS 129 Query: 61 SWPS---RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID----------- 106 P +++ G G GK+ L + + +F N + + + + Sbjct: 130 ESPGDQYNPLLIYGGVGLGKTHLMQAIA---NNMKFHNPSVRIKYVTSENFMNDFVNSIK 186 Query: 107 ------------TRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSW 151 +L++DI T+ F+ N ++ +++T+ P Sbjct: 187 SGTQEEFRREYRDLDALLVDDIQFFASKGETQTEFFNTFNVLYDNKKQIVLTSDKDPREI 246 Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211 L SR V+I+ P + ++ + + + + ++ QR+ ++ Sbjct: 247 PNLTARLVSRFMWGVPVEITSPALETRIAILKSKAEEEHLDVPNDVLNFVAQRINTNVRE 306 Query: 212 AEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 E + ++ + IT LA E L+ Sbjct: 307 LEGALMRIRVFSELHQQPITLKLATEALQGM 337 >gi|166365030|ref|YP_001657303.1| chromosomal replication initiation protein [Microcystis aeruginosa NIES-843] gi|189044599|sp|B0JGA6|DNAA_MICAN RecName: Full=Chromosomal replication initiator protein DnaA gi|166087403|dbj|BAG02111.1| chromosomal replication initiator protein [Microcystis aeruginosa NIES-843] Length = 444 Score = 97.9 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 77/233 (33%), Gaps = 28/233 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD----- 86 + +V A + P R + L G G GK+ L Sbjct: 107 NPKYNFSRFVVGPTNRMAHAAALAVAELPGREFNPLFLCGGVGLGKTHLMQAIGHYRLEL 166 Query: 87 --KSRSTRFSNIAKSLDSILIDTRKP-------------VLLEDIDLLDFND---TQLFH 128 +SR S + D I + +L++D+ ++ + + FH Sbjct: 167 YPQSRVFYVSTEQFTNDLITAIRQDSMESFRNHYRHADILLVDDLQFIEGKEYTQEEFFH 226 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 N++H+ +++ + P L D L SR V I PD + ++ K Sbjct: 227 TFNTLHEAGKQVVLASDRLPKQIP-SLQDRLISRFSMGLVADIQAPDIETRMAILQKKAE 285 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + +++ YI ++ E + + G+ +T A VL Sbjct: 286 YENLRLPREVIEYIAVNYTSNIRELEGALIRATTYISISGLPMTVENIAPVLN 338 >gi|330835984|ref|YP_004410625.1| chromosomal replication initiator protein DnaA [Spirochaeta coccoides DSM 17374] gi|329747887|gb|AEC01243.1| chromosomal replication initiator protein DnaA [Spirochaeta coccoides DSM 17374] Length = 470 Score = 97.9 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 36/232 (15%), Positives = 75/232 (32%), Gaps = 26/232 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLAN--------- 82 ++ + A I P ++ G G GK+ L Sbjct: 130 NPLYRFENFIAGENSAFAYSAAMAISKNPGVTYNPCLVYGGVGLGKTHLLQSIGNYILEN 189 Query: 83 --------IWSDKSRSTRFSNIAKSLDSILIDTR---KPVLLEDIDLLDFND---TQLFH 128 + ++ + +I + +L++DI L D +LFH Sbjct: 190 NPELKVVYVTAEMFTNEFIQSIGDKKTQAFKNKYRKVGVLLIDDIHFLQGKDSTQEELFH 249 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N ++ L+ T L SR + V + P+ + ++ + A+ Sbjct: 250 TFNDLYDTHKQLVFTCDRPISELKDLTSRLRSRFERGLNVDLLPPNYETRMAILKRKSAE 309 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + I + +I + + ++ E + K+ + IT +A E LK Sbjct: 310 KNMSIPDDVLDFISRNVNTNVRDLEASLTKLIAYSTLLNKEITLDIAKEQLK 361 >gi|260887485|ref|ZP_05898748.1| ATPase [Selenomonas sputigena ATCC 35185] gi|330837867|ref|YP_004412447.1| chromosomal replication initiator protein DnaA [Selenomonas sputigena ATCC 35185] gi|260862772|gb|EEX77272.1| ATPase [Selenomonas sputigena ATCC 35185] gi|329745631|gb|AEB98987.1| chromosomal replication initiator protein DnaA [Selenomonas sputigena ATCC 35185] Length = 488 Score = 97.9 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 39/233 (16%), Positives = 81/233 (34%), Gaps = 26/233 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDK---- 87 + D + ++ A + P RV + G G GK+ L + K Sbjct: 152 NSHYTFDTFVTGNSNRFAHAAALAVAESPGRVYNPFFMYGGVGLGKTHLMHAIGHKILEK 211 Query: 88 ---------SRSTRFSNIAKSLDSILIDT-------RKPVLLEDIDLLDFND---TQLFH 128 S + + S+ ++ +L++DI L + + FH Sbjct: 212 FPQMRVLYISSEKFTNELINSIRDGNPESFRQKYRNIDVLLVDDIQFLSKKEHTQEEFFH 271 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H + +++++ P L SR + + I PD + ++ K A Sbjct: 272 TFNTLHDANKHIILSSDRHPREIQTLEDRLRSRFEWGLITDIQAPDLETRIAILRKKAAL 331 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + + + I R++ ++ E + ++ A +T SL E L Sbjct: 332 EHLDVPNDVMFSIANRIDNNIRELEGALTRVVAYASLTKQPVTTSLVNEALAN 384 >gi|261414415|ref|YP_003248098.1| chromosomal replication initiator protein DnaA [Fibrobacter succinogenes subsp. succinogenes S85] gi|261370871|gb|ACX73616.1| chromosomal replication initiator protein DnaA [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326676|gb|ADL25877.1| chromosomal replication initiator protein DnaA [Fibrobacter succinogenes subsp. succinogenes S85] Length = 441 Score = 97.9 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 33/215 (15%), Positives = 69/215 (32%), Gaps = 28/215 (13%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV----VILVGPSGSGKSCLANI----- 83 P ++ + + A + P + + G SG GK+ L Sbjct: 102 PLSGSFRFENFVPGDKAQLAFNAALAVARNPDGTQYNPLFIYGSSGLGKTHLLQSIGNYI 161 Query: 84 ----------------WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDT 124 +S + + + +L++DI Sbjct: 162 LEEDPTKRVIYLTSEDFSQQYMKCLQEKRITEMSDFYRNEVDILLIDDIQNWTGKYETQN 221 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + F I N++HQ +++T+ L SR V I PD + E ++ K Sbjct: 222 EFFLIFNALHQAGKQIVLTSDAPAAEVKNLSDRLVSRFSWGLTVDIQPPDVETREAILHK 281 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 +R + I ++ Y+ + + ++ E + K+ Sbjct: 282 KAEERHLEISDEVIRYLAENIASNVRCLESAIIKL 316 >gi|262281562|ref|ZP_06059341.1| chromosomal replication initiator protein DnaA [Acinetobacter calcoaceticus RUH2202] gi|262257021|gb|EEY75760.1| chromosomal replication initiator protein DnaA [Acinetobacter calcoaceticus RUH2202] Length = 468 Score = 97.9 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 46/268 (17%), Positives = 97/268 (36%), Gaps = 38/268 (14%) Query: 5 KEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLID------- 57 KE S P PK +++L + + + + A Sbjct: 108 KEPESVSSPHTNTVVNPKTAKKKLL-----NPQFTFSLFVEGRSNQMAAETCRKVLTQLG 162 Query: 58 SWPSWPSRVVILVGPSGSGKSCLANI-----WSDKSRSTRFSNIAKSLDSILIDTR---- 108 + P + L GP+G GK+ L K + ++S + + Sbjct: 163 ASQHNP---LFLYGPTGLGKTHLMQAVGNALLQAKPNARVMYMTSESFVQDFVSSLQKGK 219 Query: 109 -----------KPVLLEDIDLLDFNDTQL---FHIINSIHQYDSSLLMTARTFPVSWGVC 154 +L++DI LL + L F+ N++ +++T+ +P Sbjct: 220 VEEFKKNCRSLDLLLVDDIHLLAGKEASLVEFFYTFNALLDESKQIILTSDRYPKELTEL 279 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 P L SR V + PD + ++++K + + + + A +I Q++ ++ E Sbjct: 280 DPRLVSRFSWGLSVGVEPPDIETRIEILLKKAENSGVDLPRNCALFIAQQVVANVRELEG 339 Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKET 242 ++K+ ++ +G I + E LK+ Sbjct: 340 ALNKVVAISRFKGAPIDLDVVRESLKDV 367 >gi|255326481|ref|ZP_05367563.1| chromosomal replication initiator protein DnaA [Rothia mucilaginosa ATCC 25296] gi|255296521|gb|EET75856.1| chromosomal replication initiator protein DnaA [Rothia mucilaginosa ATCC 25296] Length = 565 Score = 97.9 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 35/236 (14%), Positives = 82/236 (34%), Gaps = 28/236 (11%) Query: 35 CLGISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR-- 89 + D ++ + A + P + + G SG GK+ L + ++ Sbjct: 222 NPNYTFDTFVIGQSNRFAHASAFAVAEQPGIVYNPLFIYGGSGLGKTHLLHAIGHYTKYL 281 Query: 90 ----STRFSNIAKSLDSILIDTR--------------KPVLLEDIDLLDFND---TQLFH 128 R+ N + + + R +L++DI L + + FH Sbjct: 282 YPNLRVRYVNSEEFTNDFINSIRDDEGSSFKQIYRNVDVLLIDDIQFLAGKEATMEEFFH 341 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N+++ + +++T+ P + SR + V + P+ + ++ K + Sbjct: 342 TFNALYNHQKQIVITSDLPPKQLTGFAERMRSRFGSGLNVDVQPPELETRIAILRKKAQN 401 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG--MGITRSLAAEVLKET 242 + + + YI + ++ E + + A + IT + A LK+ Sbjct: 402 EILPVRDDVMEYIASHVTANIRELEGALIRASAAASMKKPPEPITLAEAETYLKDL 457 >gi|256823906|ref|YP_003147866.1| chromosomal replication initiator protein DnaA [Kytococcus sedentarius DSM 20547] gi|256687299|gb|ACV05101.1| chromosomal replication initiator protein DnaA [Kytococcus sedentarius DSM 20547] Length = 506 Score = 97.9 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 86/233 (36%), Gaps = 26/233 (11%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRS--- 90 + D ++ S+ A + P+R + + G SG GK+ L + +R+ Sbjct: 167 KYTFDTFVLGSSNRFAHAAATAVAEAPARAYNPLFIYGGSGLGKTHLLHAIGHYARTLDS 226 Query: 91 --------------TRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFHII 130 + ++ + + V L++DI L + + FH Sbjct: 227 SVRVKYVNSEEFTNQFINAVSAGQANAFQRQYRDVDVLLIDDIQFLQGKEQTMEEFFHTF 286 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N++H + +++T+ P + SR + + + PD + ++ + A + Sbjct: 287 NTLHNSEKQIVITSDQPPKKLSGFAERMRSRFEWGLLTDVQPPDLETRIAILRRKAAADK 346 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 + I + I ++ ++ E + ++ A G + LA VLK+ Sbjct: 347 LDIPDDVLHLIASKISSNIRELEGALTRVTAFASLSGSPLDEYLARTVLKDVM 399 >gi|163838770|ref|YP_001623175.1| chromosomal replication initiator protein [Renibacterium salmoninarum ATCC 33209] gi|162952246|gb|ABY21761.1| chromosomal replication initiator protein [Renibacterium salmoninarum ATCC 33209] Length = 467 Score = 97.9 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 40/258 (15%), Positives = 90/258 (34%), Gaps = 28/258 (10%) Query: 13 PDK-QKNDQPKNKEEQLFFSFPR-CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVV 67 PD+ + +P+ F R D ++ + A + P+ + Sbjct: 103 PDEPSEESRPQPGPPSTSNEFGRLNPKYLFDTFVIGQSNRFAHAAAVAVAEAPAKAYNPL 162 Query: 68 ILVGPSGSGKSCLANIWSDKSRS------TRFSNIAKSLDSILIDTR------------- 108 + G SG GK+ L + +R R+ N + + + R Sbjct: 163 FIYGDSGLGKTHLLHAIGHYARRLYNGIRVRYVNSEEFTNEFINSIRYDEGTSFKTTYRN 222 Query: 109 -KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164 +L++DI L + + FH N++H ++ +++T+ P + SR + Sbjct: 223 VDILLIDDIQFLSGKEATQEEFFHTFNALHNHNKQVVITSDLPPKQLSGFEERMRSRFEW 282 Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 + + P+ + ++ K + + YI ++ ++ E + ++ A Sbjct: 283 GLLTDVQPPELETRIAILRKKAIGEGLHAPDDVLEYIASKISTNIRELEGALIRVTAFAS 342 Query: 225 SRGMGITRSLAAEVLKET 242 + L VLK+ Sbjct: 343 LNRQSVDVGLTETVLKDL 360 >gi|184154477|ref|YP_001842817.1| chromosomal replication initiation protein DnaA [Lactobacillus fermentum IFO 3956] gi|226735821|sp|B2GEU8|DNAA_LACF3 RecName: Full=Chromosomal replication initiator protein DnaA gi|183225821|dbj|BAG26337.1| chromosomal replication initiation protein DnaA [Lactobacillus fermentum IFO 3956] gi|299782686|gb|ADJ40684.1| Chromosomal replication initiator protein dnaA [Lactobacillus fermentum CECT 5716] Length = 438 Score = 97.9 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 39/271 (14%), Positives = 87/271 (32%), Gaps = 38/271 (14%) Query: 4 MKEDYSFFV-PDKQKNDQPKNKEEQLFF--SFPRCLGISRDDLLVHSAIEQAVRLIDSWP 60 ++ DY P P+ Q F P + + + A + Sbjct: 73 IRPDYVLATDPTPLAQTPPRP---QSTFKEETPLNPEYTFQTFIEGRSNMMAYASAFAAS 129 Query: 61 SWPS---RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID----------- 106 P +++ G G GK+ L + + +F N + + + + Sbjct: 130 ESPGDQYNPLLIYGGVGLGKTHLMQAIA---NNMKFHNPSVRIKYVTSENFMNDFVNSIK 186 Query: 107 ------------TRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSW 151 +L++DI T+ F+ N ++ +++T+ P Sbjct: 187 SGTQEEFRREYRDLDALLVDDIQFFASKGETQTEFFNTFNVLYDNKKQIVLTSDKDPREI 246 Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211 L SR V+I+ P + ++ + + + + ++ QR+ ++ Sbjct: 247 PNLTERLVSRFMWGVPVEITSPALETRIAILKSKAEEEHLDVPNDVLNFVAQRINTNVRE 306 Query: 212 AEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 E + ++ + IT LA E L+ Sbjct: 307 LEGALMRIRVFSELHQQPITLKLATEALQGM 337 >gi|332363606|gb|EGJ41387.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus sanguinis SK1059] Length = 450 Score = 97.9 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 37/258 (14%), Positives = 86/258 (33%), Gaps = 33/258 (12%) Query: 19 DQPKNKEEQLFF---SFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVG 71 P+ QL + D+ + A+ + ++ + + + G Sbjct: 94 TSPQISTVQLSLPPIDTGLKSKYTFDNFVQGDGNIWAKAAALAVSENLAT-TYNPLFIYG 152 Query: 72 PSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI--------------------LIDTRKPV 111 G GK+ L N ++ K + + + + + Sbjct: 153 GPGLGKTHLLNAIGNQILENIPDARVKYIPAETFINDFLEHLRLGEMDSFKKIYRSLDLL 212 Query: 112 LLEDIDLLDF----NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 L++DI L + F+ N++H + +++T+ P L +R K Sbjct: 213 LIDDIQSLGGKKVSTQEEFFNTFNALHGENKQIVLTSDRSPDHLDNLEERLVTRFKWGLT 272 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 I+ PD + ++ + Y+ + + ++ E ++ + +A R Sbjct: 273 QNITPPDFETRIAILRNKIENLDYIFPNDTLEYLAGQFDSNVRDLEGALNDISLIARVRH 332 Query: 228 -MGITRSLAAEVLKETQQ 244 IT +AAE ++ +Q Sbjct: 333 LKEITIDIAAEAIRARKQ 350 >gi|254796642|ref|YP_003081478.1| chromosomal replication initiator protein DnaA [Neorickettsia risticii str. Illinois] gi|254589879|gb|ACT69241.1| chromosomal replication initiator protein DnaA [Neorickettsia risticii str. Illinois] Length = 598 Score = 97.5 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 36/241 (14%), Positives = 85/241 (35%), Gaps = 31/241 (12%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWP------SRVVILVGPSGSGKSCLAN--IWSDKS 88 + D +V + E A S + L G G GK+ L + +W K+ Sbjct: 262 SRTFDSFVVGKSNELAFTASKRVAEAAELPIPGSNPLFLYGGVGLGKTHLMHAIVWHIKA 321 Query: 89 RSTRFSNIAKSLDSI------------------LIDTRKPVLLEDIDLLDFND---TQLF 127 I S + + + ++++D+ + + + F Sbjct: 322 NYADRRVIYLSAEKFMHKYITALKNKDMMSFKQIFRSVDVLMVDDVQFISGKESTQEEFF 381 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++ + + L+++A P + SRL V I+ + ++ Sbjct: 382 HTFNALIEQNKQLVISADRSPSDLQGVEERIQSRLSWGLVADINQTTFELRVGILESKLE 441 Query: 188 D--RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 I + KK+ ++ + + ++ E ++K+ + G +T A ++L + + Sbjct: 442 QMKSDIVVPKKVVEFMARNIVSNVRELEGALNKVIAHSEITGSVVTVDSAKDLLADILRT 501 Query: 246 D 246 + Sbjct: 502 N 502 >gi|86607504|ref|YP_476266.1| chromosomal replication initiation protein [Synechococcus sp. JA-2-3B'a(2-13)] gi|123765419|sp|Q2JHS1|DNAA_SYNJB RecName: Full=Chromosomal replication initiator protein DnaA gi|86556046|gb|ABD01003.1| chromosomal replication initiator protein DnaA [Synechococcus sp. JA-2-3B'a(2-13)] Length = 467 Score = 97.5 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 36/237 (15%), Positives = 76/237 (32%), Gaps = 26/237 (10%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW-----SD 86 S +V A + P R + L G G GK+ L Sbjct: 128 NPKYSFSRFVVGPNNRMAHAAALAVADKPGRAYNPLFLCGGVGLGKTHLMQAIGHYQLEA 187 Query: 87 KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 ++ F + + LID + +L++D+ ++ + + FH Sbjct: 188 NPQAKVFYVSTERFTNDLIDAIRRDSMQSFREHYRDVDILLVDDVQFIEGKEYTQEEFFH 247 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H+ +++ A P LCSR + +I PD + ++ K Sbjct: 248 TFNTLHESGKQIVLAADRSPHLIPRLQERLCSRFSMGLIAEIQSPDIETRMAILKKKAEY 307 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 + + + YI ++ E + + G+ ++ +L + Sbjct: 308 EGMNLPADVIEYIATTYTSNIRELEGALIRAVAYVSISGLPMSVETIQPILNPPSEP 364 >gi|330444487|ref|YP_004377473.1| chromosomal replication initiator protein DnaA [Chlamydophila pecorum E58] gi|328807597|gb|AEB41770.1| chromosomal replication initiator protein DnaA [Chlamydophila pecorum E58] Length = 461 Score = 97.5 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 39/245 (15%), Positives = 82/245 (33%), Gaps = 36/245 (14%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWP------SWPSRVVILVGPSGSGKSC 79 Q P +S LV S + R++ + S+P + L GP G+GK+ Sbjct: 99 MQYGEVLPE---MSFSSFLVSSENDLPFRILQEFARIEEGKSFPFNPIYLFGPEGAGKTH 155 Query: 80 LANIWSDKSRSTRFSNIAKSLD------------------SILIDTRKPVLLEDIDLLDF 121 L R + + S D + +E+I++ Sbjct: 156 LMQAAIHMLRESCDKVLYVSSDLFTEHLVSAIRSGEMQRFRAFYRNVDALFIENIEVFSG 215 Query: 122 ---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178 + FH NS+H +++++ P L SR + VV I + L Sbjct: 216 KNATQEEFFHTFNSLHTEGKLIVISSCYAPADLKAMEERLISRFEWGVVVPIQPLRTEGL 275 Query: 179 EKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238 ++++ + I I + +++ + ++ + + + L+ ++ Sbjct: 276 RNLLMRQAEIQGIRIQEFALDFLISSLSANVKNLLHAIGLL------SKRVAYKKLSQQL 329 Query: 239 LKETQ 243 L E Sbjct: 330 LYEDD 334 >gi|225552151|ref|ZP_03773091.1| chromosomal replication initiator protein DnaA [Borrelia sp. SV1] gi|225371149|gb|EEH00579.1| chromosomal replication initiator protein DnaA [Borrelia sp. SV1] Length = 485 Score = 97.5 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 78/209 (37%), Gaps = 26/209 (12%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRVV---ILVGPSGSGKSCLANIWSDKSRST-- 91 + ++ ++ + A S P + ++ G G GK+ L +K+ Sbjct: 145 RYTFENFIIGPNNKLAYNASLSISKNPGKKYNPCLIYGGVGLGKTHLLQSIGNKTEELHH 204 Query: 92 ---RFSNIAKSLDSILIDTRKP---------------VLLEDIDLLDFND---TQLFHII 130 A++ + +++ K +L++DI L + +LFH Sbjct: 205 NLKILYVTAENFLNEFVESIKTHETKKFKKKYRYLDMLLIDDIHDLQKKEGIQEELFHTF 264 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N++++ + L+ T P L SR V IS P+ + ++ K + Sbjct: 265 NALYEDNKQLVFTCDRSPSELTNFTDRLKSRFTRGLNVDISKPNFELRAAIVEKKAEEDG 324 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 I + K + + Q++ ++ E V K+ Sbjct: 325 INVPKNILNLVAQKVTTNIRDLEAAVTKL 353 >gi|162448270|ref|YP_001610637.1| chromosomal replication initiator protein DnaA [Sorangium cellulosum 'So ce 56'] gi|161158852|emb|CAN90157.1| chromosomal replication initiator protein DnaA [Sorangium cellulosum 'So ce 56'] Length = 471 Score = 97.5 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 36/238 (15%), Positives = 82/238 (34%), Gaps = 27/238 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKS--- 88 + +V + + A + R + + G +G GK+ L + + + Sbjct: 135 NPKHTFASFVVGPSNQLAHAAAIAAAGGGGRRYNPLFICGGTGLGKTHLMHAIAHRVFEG 194 Query: 89 --RSTRFSNIAKSLDSILIDTRKP----------------VLLEDIDLLDFND---TQLF 127 + A+ + I + +L++DI L + + F Sbjct: 195 RPDARIIYVSAEKFTNDFITAIQHHRMDEFRTRYRSSCDVLLVDDIQFLAGREQTQEEFF 254 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++H D +++T+ +P + L SR V I +P+ + ++ A Sbjct: 255 HTFNALHTLDRQIVVTSDKYPQNLERMEERLVSRFSWGLVADIQVPELETRVAIVRNKAA 314 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 I + +A Y+ Q + ++ E + ++ + G + A + T Sbjct: 315 LEGIALTDDVALYLAQMVRSNVRELEGTLIRLAAKSSLTGRPVDLPFARAEITATSPP 372 >gi|289450862|ref|YP_003474445.1| chromosomal replication initiator protein DnaA [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185409|gb|ADC91834.1| chromosomal replication initiator protein DnaA [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 438 Score = 97.5 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 40/244 (16%), Positives = 81/244 (33%), Gaps = 26/244 (10%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP--SRVVILVGPSGSGKSCLANIW 84 Q + D+ +V S+ A S + L G SG GK+ L + Sbjct: 95 QTSIEGNINPAFTFDNFIVGSSNAHAHAACVSVAQNSRVFNPLFLYGGSGLGKTHLLHAI 154 Query: 85 -----SDKSRSTRFSNIAKSLDSILIDTRKP---------------VLLEDIDLLDFNDT 124 + + + I T + +L++DI ++ + Sbjct: 155 GNYVKQHQPEKHIIYVPCEQFVNEFIRTIRENSYDSFRQKYRNCDMLLIDDIQFIESKEQ 214 Query: 125 ---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 + F N++ + S+++MT P S L +R + +V I++P+ + + Sbjct: 215 MQIEFFSTFNALTENGSNIIMTCDKPPHSLSSLEERLRTRFASGVIVDINIPNFETRVAI 274 Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + K I + + YI S+ E + + + G + S+A L Sbjct: 275 LQKRAEFLNIQVSYDILEYIAHNFVSSIRELEGAFTTVISYSYISG-KLDLSVAKAALNN 333 Query: 242 TQQC 245 Sbjct: 334 LISP 337 >gi|224541288|ref|ZP_03681827.1| hypothetical protein CATMIT_00448 [Catenibacterium mitsuokai DSM 15897] gi|224525792|gb|EEF94897.1| hypothetical protein CATMIT_00448 [Catenibacterium mitsuokai DSM 15897] Length = 459 Score = 97.5 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 35/209 (16%), Positives = 74/209 (35%), Gaps = 27/209 (12%) Query: 38 ISRDDLLVHSAIEQA--VRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS-----RS 90 ++ D+ +V + A L + + L SG GK+ L N + Sbjct: 121 LTFDNFVVGNCNRIAQNAALAVALKPGTYNPLFLHSNSGLGKTHLLNAIGNYVKKKFPGK 180 Query: 91 TRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINS 132 A++ + ++ +L++DI + + F+I N+ Sbjct: 181 RILYTNAEAFVNDYVEAIGNNTIATFNRRYRSVDVLLIDDIQFIANKEGSMEMFFNIFNT 240 Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI- 191 + +++T+ PV L SR + V I P+ + + ++ K R I Sbjct: 241 LQHSGKQIVITSDKPPVELKGMENRLVSRFRQGLTVTIDNPEFETAKAILKKKIESRMID 300 Query: 192 -FIDKKLAAYIVQRMERSLVFAEKLVDKM 219 ID+++ +I + + E V + Sbjct: 301 YPIDEEVLDFIASHFNKDVRDLEGAVTTL 329 >gi|311897307|dbj|BAJ29715.1| putative chromosomal replication initiator protein DnaA [Kitasatospora setae KM-6054] Length = 629 Score = 97.5 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 89/235 (37%), Gaps = 28/235 (11%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90 D ++ ++ A + P+ + + G SG GK+ L + SRS Sbjct: 291 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFVYGESGLGKTHLLHAIGHYSRSL 350 Query: 91 -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128 R+ + + + + R +L++DI L + + FH Sbjct: 351 FPGTRVRYVSSEEFTNEFINSIRDGKADAFRKRYRDIDILLVDDIQFLASKESTQEEFFH 410 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 N++H + +++++ P + L D L +R + + ++ P+ + ++ K Sbjct: 411 TFNTLHNANKQIVLSSDRPPKQL-ITLEDRLRNRFEWGLITDVTPPELETRIAILRKKAI 469 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 Q+ + +I R+ R++ E + ++ A + LA VLK+ Sbjct: 470 QEQLNAPADVLEFIASRITRNIRELEGALIRVTAFANLNRAPVDLELAGIVLKDL 524 >gi|304321315|ref|YP_003854958.1| hypothetical protein PB2503_08804 [Parvularcula bermudensis HTCC2503] gi|303300217|gb|ADM09816.1| hypothetical protein PB2503_08804 [Parvularcula bermudensis HTCC2503] Length = 230 Score = 97.5 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 83/232 (35%), Gaps = 21/232 (9%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSR---------VVILVGPSGSGK 77 Q FP + +A + A+ +++W R + +L G G GK Sbjct: 3 QPSLPFPEAPIVPP--FHEGAATKAALASLNAWYERALRSGAEGGGLTLAVLWGGYGVGK 60 Query: 78 SCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYD 137 S LA + + +T + S V+++D D LF +N+ Sbjct: 61 SRLAAEFGRRVGATFLAGPTLS-GLPPRSALPLVVIDDADQASLG--ALFAYVNAALSRP 117 Query: 138 SSLLMTARTFPVSWG-----VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 L+ R+ P WG + DL SRL TV+++ P+ + +V+ D + Sbjct: 118 QPTLVIGRSRPGRWGGGEDETGVQDLRSRLMGGTVIELDPPEQTAIIQVLAIALRDAGLT 177 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 + L R+ R V + LA RSL + LK + Sbjct: 178 VPPALIEETGGRLCRRFVAPLTIAATARRLAGPGKTP--RSLLEQALKSNPE 227 >gi|241889156|ref|ZP_04776460.1| chromosomal replication initiator protein DnaA [Gemella haemolysans ATCC 10379] gi|241864405|gb|EER68783.1| chromosomal replication initiator protein DnaA [Gemella haemolysans ATCC 10379] Length = 494 Score = 97.5 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 43/276 (15%), Positives = 85/276 (30%), Gaps = 46/276 (16%) Query: 3 LMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW--- 59 EDY VP+K KN + ++ +V + +W Sbjct: 127 FPLEDYKHPVPNKNITASKKNP--------TLNKNYTFENFVVGEGNAFTHNI--AWNVA 176 Query: 60 --PSWPSRVVILVGPSGSGKSCLANIWSDKSRS--------------------TRFSNIA 97 P + + G G GK+ L + ++ + + Sbjct: 177 VSPGGIYNPLFIYGGVGLGKTHLLHAIGNEMEANFPDFKIECISSEKFLNEFLASIKPMK 236 Query: 98 KSLDSILIDTR--------KPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTART 146 + D +L++DI L FH N + +++ + Sbjct: 237 DKNNYTNADEDFRRKYRDVDALLIDDIQFLSGKTETQNAFFHTFNELQMNQKQIVLISDR 296 Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206 P L +R I+ PD + +I I +D++ YI + Sbjct: 297 SPSQLNDLEDRLVTRFSQGITADITPPDFETRMAIIKFKCEQFDIKLDEETLTYISSNVS 356 Query: 207 RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ E ++ ++ A S+ + S+A E+LK Sbjct: 357 SNIRELEGVLKRIKFTATSKHEQPSLSIAEEILKSA 392 >gi|313635505|gb|EFS01740.1| chromosomal replication initiator protein DnaA [Listeria seeligeri FSL N1-067] Length = 296 Score = 97.5 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 27/186 (14%), Positives = 62/186 (33%), Gaps = 26/186 (13%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW-----SD 86 D ++ S A + P++ + + G G GK+ L + Sbjct: 111 NPRYVFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAVGHYVQQH 170 Query: 87 KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 K + ++ + I + + +L++DI L + + FH Sbjct: 171 KDNAKVMYLSSEKFTNEFISSIRDNKTEEFRTKYRNVDVLLIDDIQFLAGKEGTQEEFFH 230 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N+++ +++++ P L SR + + I+ PD + ++ K Sbjct: 231 TFNTLYDEQKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKA 290 Query: 189 RQIFID 194 + I Sbjct: 291 DGLDIP 296 >gi|315925611|ref|ZP_07921821.1| DNA-directed DNA replication initiator protein [Pseudoramibacter alactolyticus ATCC 23263] gi|315621152|gb|EFV01123.1| DNA-directed DNA replication initiator protein [Pseudoramibacter alactolyticus ATCC 23263] Length = 468 Score = 97.1 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 76/234 (32%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIW------- 84 + + ++ A + PS + + G G GK+ L Sbjct: 133 NAKYTFERFVIGENNRFAHAACVAVSEAPSERYNPLFIYGGVGLGKTHLMQAIGNYILTY 192 Query: 85 ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128 + + I + + + V L++DI L + + FH Sbjct: 193 TPDKKVIYVSCETFTNEFIDAIQNKNNLSFRNRYRNVDILLIDDIQFLSGKEGTQEEFFH 252 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H + +++++ P L SR + + IS P+ + ++ K Sbjct: 253 TFNALHDENKQIVISSDRPPREIPKLAERLRSRFEMGLITDISTPNFETRMAILRKKAES 312 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 I + ++I + ++ E + + + G I+ A E L + Sbjct: 313 NAEDIPDDVMSFIADNIHSNIRELEGALTTVVAYSKLHGETISLDFAREALADL 366 >gi|212715149|ref|ZP_03323277.1| hypothetical protein BIFCAT_00035 [Bifidobacterium catenulatum DSM 16992] gi|212661830|gb|EEB22405.1| hypothetical protein BIFCAT_00035 [Bifidobacterium catenulatum DSM 16992] Length = 491 Score = 97.1 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 43/238 (18%), Positives = 83/238 (34%), Gaps = 33/238 (13%) Query: 40 RDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSD---------K 87 D + + A + + + + G SG GK+ L N + K Sbjct: 155 FDTFVPGDSNRFARTVALAVAEGSGHDFNPLCIYGGSGLGKTHLLNAIGNYALVKDPSLK 214 Query: 88 SRSTRFSNIAKSLDSILIDTR----------------KPVLLEDIDLLDFNDTQL---FH 128 R L DT +L++DI L D L FH Sbjct: 215 VRYVTSEEFTNEFIEALGDTNQNSGQIKEFNRRYREVDVLLIDDIQFLSGKDATLEQFFH 274 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++HQ + +++ + P L SR ++ V + PD + ++ + + Sbjct: 275 TFNTLHQANKRIVIASDVPPKDLQGFNERLISRFESGLTVDVKPPDLETRIAILRMIAHE 334 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + + I +R ++ E ++++ +A G +TR+LA L++ D Sbjct: 335 S--NVQDDVLNLIAERFTENIRELEGALNRVTAMASLSGQPVTRALAEHTLQDFFATD 390 >gi|166154461|ref|YP_001654579.1| chromosomal replication initiation protein [Chlamydia trachomatis 434/Bu] gi|166155336|ref|YP_001653591.1| chromosomal replication initiation protein [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335720|ref|ZP_07223964.1| chromosomal replication initiation protein [Chlamydia trachomatis L2tet1] gi|165930449|emb|CAP03942.1| Chromosomal replication initiation protein [Chlamydia trachomatis 434/Bu] gi|165931324|emb|CAP06896.1| Chromosomal replication initiation protein [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 456 Score = 97.1 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 32/213 (15%), Positives = 72/213 (33%), Gaps = 28/213 (13%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWP-------SWPSRVVILVGPSGSGKSCLANIWSDK 87 +S + LV + VR++ + +P + L GP SGK+ L Sbjct: 104 DPNMSFANFLVTPENDLPVRILQEFAKVSEQGKGFPFNPIYLFGPESSGKTHLMQAAVGG 163 Query: 88 SRSTRFSNIAKSLD------------------SILIDTRKPVLLEDIDLLDF---NDTQL 126 R + + + + + +EDI++L + Sbjct: 164 LREAGVKTLYVTSELFTEHLVSAIRSGEMQRFRAFYRNVEALFIEDIEVLSGKGATQEEF 223 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH NS+H +++++ P L SR + + +S + L+ + + Sbjct: 224 FHTFNSLHTEGKLIVISSTFAPGDLKAMEERLISRFEWGISIPVSPLTREGLKSFLERRI 283 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 I I++ +++Q + + + + Sbjct: 284 EKLNIRIEETALDFLIQALSSHVKSLLHALTTL 316 >gi|241765812|ref|ZP_04763752.1| chromosomal replication initiator protein DnaA [Acidovorax delafieldii 2AN] gi|241364294|gb|EER59449.1| chromosomal replication initiator protein DnaA [Acidovorax delafieldii 2AN] Length = 471 Score = 97.1 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 35/240 (14%), Positives = 84/240 (35%), Gaps = 26/240 (10%) Query: 29 FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN--- 82 F ++ + L+ +A A P + + + G G GK+ L + Sbjct: 131 AFRTRLNPALTFETLVEGTANRMARSAAMHVAGMPGHLYNPLFIYGGVGLGKTHLVHAVG 190 Query: 83 --------------IWSDKSRSTRFSNIAKSLDSILIDTR---KPVLLEDIDLLDFND-- 123 I +++ S + + +L++D+ D Sbjct: 191 NRLLQDKPDAKVLYIHAEQFVSDVVKAYQRRTFDEFKERYHSLDLLLIDDVQFFANKDRT 250 Query: 124 -TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 + F+ ++ S ++MT+ T+P L SR + V I P+ + ++ Sbjct: 251 QEEFFNAFEALLAKKSHIVMTSDTYPKGLANIHERLVSRFDSGLTVAIEPPELEMRVAIL 310 Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + +++A ++ + + ++ E + K+ + I+ LA E L++ Sbjct: 311 INKARVEGTEMPEEVAFFVAKNVRSNVRELEGALRKILAYSRFNQKEISIQLAREALRDL 370 >gi|120608715|ref|YP_968393.1| chromosomal replication initiation protein [Acidovorax citrulli AAC00-1] gi|120587179|gb|ABM30619.1| chromosomal replication initiator protein DnaA [Acidovorax citrulli AAC00-1] Length = 475 Score = 97.1 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 37/250 (14%), Positives = 88/250 (35%), Gaps = 26/250 (10%) Query: 19 DQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGS 75 P ++ F ++ + L+ +A A P + + + G G Sbjct: 125 SAPSDEPAAAPFRSRLNPALTFETLVEGTANRMARSAAMHVAGSPGHLYNPLFIYGGVGL 184 Query: 76 GKSCLANI-----WSDKSRSTRFSNIAKSLDSILIDTR---------------KPVLLED 115 GK+ L + DK + A+ S ++ +L++D Sbjct: 185 GKTHLVHAVGNRLLQDKPDAKVLYIHAEQFVSDVVKAYQRRTFDEFKAHYHSLDLLLIDD 244 Query: 116 IDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 + D + F+ ++ S ++MT+ T+P L SR + V I Sbjct: 245 VQFFANKDRTQEEFFNAFEALLAKKSHIVMTSDTYPKGLANIHERLVSRFDSGLTVTIEP 304 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232 P+ + +++ + +++A ++ + + ++ E + K+ + ++ Sbjct: 305 PELEMRVAILINKARAESAEMPEEVAFFVAKNVRSNVRELEGALRKILAYSRFNQKEVSI 364 Query: 233 SLAAEVLKET 242 LA E L++ Sbjct: 365 QLAREALRDL 374 >gi|81251068|gb|ABB69872.1| DNA replication initiator protein [Nitrosospira sp. GS832] Length = 475 Score = 97.1 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 37/258 (14%), Positives = 92/258 (35%), Gaps = 28/258 (10%) Query: 11 FVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVR---LIDSWPSWPSRVV 67 VP ++ + K E+ + + + A + A + P Sbjct: 119 VVPVQKFAMDAREKREKNPSRL--NPSFTLNSFVTGKANQLARAGAIQVAERPGTAYNPF 176 Query: 68 ILVGPSGSGKSCLANIW------SDKSRSTRFSNIAKSLDSILID--------------T 107 + G G GK+ L + + R+ + + + ++ + Sbjct: 177 FIYGGVGLGKTHLIQAIGNFVLEHNSTAKVRYIHSEQYVSDVVRAYQHKAFDDFKRYYHS 236 Query: 108 RKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164 +L++DI + F+ N++ + +++T ++P L SR Sbjct: 237 LDVLLIDDIQFFGGKNRTQEEFFYAFNALIEAHRQVIITCDSYPKEISGMEERLISRFGW 296 Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 +V + P+ + +++K I +D+ +A +I + + ++ E + ++ + Sbjct: 297 GLIVAVEPPELEMRVAILLKKALMENIVLDENVAFFIAKHIRSNVRELEGALKRVLAYSR 356 Query: 225 SRGMGITRSLAAEVLKET 242 G ++ LA E LK+ Sbjct: 357 FTGHSLSLDLAREALKDL 374 >gi|284041472|ref|YP_003391812.1| chromosomal replication initiator protein DnaA [Conexibacter woesei DSM 14684] gi|283945693|gb|ADB48437.1| chromosomal replication initiator protein DnaA [Conexibacter woesei DSM 14684] Length = 453 Score = 97.1 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 39/237 (16%), Positives = 80/237 (33%), Gaps = 27/237 (11%) Query: 31 SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDK 87 + D ++ A + P + + + GP G GK+ L + ++ Sbjct: 106 DESFNPKYTFDQFVIGDGNRLAHAAALAVAELPGQAYNPLFIYGPPGLGKTHLLHAIANY 165 Query: 88 SRS------TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLL---DFNDT 124 RS R++ I + + R +L++D+ L + Sbjct: 166 VRSYGDGMTVRYTTIEAFTNRFITALRSSSVEEFKRRYRDTDILLIDDVQFLQSKAKTEE 225 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + FH N++++ S L++T P L R ++ V I PD ++ K Sbjct: 226 EFFHTFNALYETGSQLVVTCDRMPRDMNALAERLRERFESGLVTDIRAPDLATRMTILRK 285 Query: 185 MFADRQIFI-DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + I R+ ++ + + ++ G I R+L VL Sbjct: 286 RVQHDGVQLASPDAIEPIADRITTNIRALQGALIRVVAFHSLTGRPIDRALVTHVLD 342 >gi|284028000|ref|YP_003377931.1| chromosomal replication initiator protein DnaA [Kribbella flavida DSM 17836] gi|283807293|gb|ADB29132.1| chromosomal replication initiator protein DnaA [Kribbella flavida DSM 17836] Length = 604 Score = 97.1 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 37/234 (15%), Positives = 83/234 (35%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVV---ILVGPSGSGKSCLANIWSDKSRST 91 + + ++ S+ A + P + ++ G SG GK+ L + RS Sbjct: 264 NPKYTFETFVIGSSNRFAHAAAVAVAEAPGKAYNPQLIYGDSGLGKTHLLHAIGHYVRSL 323 Query: 92 --------------------RFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDTQLFH 128 + S +L++DI L+ + FH Sbjct: 324 YTGARVRYVSSEEFTNDFINAIRDDKASQFQRRYRDVDVLLIDDIQFLEGKIQTQEEFFH 383 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H + +++++ P L +R + + I PD + ++ K A Sbjct: 384 TFNTLHNANKQIVISSDRAPKRLEALEDRLRNRFEWGLITDIQPPDLETRIAILRKKAAT 443 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ ++ +I +++ ++ E + ++ A + SLA VLK+ Sbjct: 444 ERLTAPPEVLEFIASKVQTNIRELEGALIRVTAFASLNRQPVDLSLAEIVLKDL 497 >gi|27904525|ref|NP_777651.1| chromosomal replication initiator protein DnaA [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|29839271|sp|P59567|DNAA_BUCBP RecName: Full=Chromosomal replication initiator protein DnaA gi|27903922|gb|AAO26756.1| chromosomal replication initiator protein DnaA [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 457 Score = 97.1 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 92/235 (39%), Gaps = 27/235 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLANIWSD---- 86 + + + + A + I P + L G SG GK+ L + ++ Sbjct: 122 NTNYTFQNFTKGQSNQLAFKTIYKIAHNPGKNYFNPLFLYGKSGLGKTHLLHAVANTILK 181 Query: 87 ----------------KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDTQLF 127 ++ T N + +L++DI + + +LF Sbjct: 182 YKNTIKIIYINSENFIQNMITSLKNNTIEEFKKYYRSVNTLLIDDIQFFAYKKHSQEELF 241 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H IN++ + +++T+ FP L SR + ++I PD + K+++K Sbjct: 242 HTINALLNRNQQIIITSDQFPQKIHGIETRLKSRFECGLTIRIDPPDLNTRTKILIKKSH 301 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 I + K+A +I + ++ ++ E ++K+ + S+ IT + A + L+E Sbjct: 302 IYDINLSYKVAFFIAKNLKSNIRELEGALNKILANSDSKKKIITINFAYKTLQEL 356 >gi|329769245|ref|ZP_08260663.1| chromosomal replication initiator protein DnaA [Gemella sanguinis M325] gi|328839336|gb|EGF88917.1| chromosomal replication initiator protein DnaA [Gemella sanguinis M325] Length = 491 Score = 97.1 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 34/240 (14%), Positives = 84/240 (35%), Gaps = 32/240 (13%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRS---- 90 + D+ +V + A + + P + + + G +G GK+ L + ++ Sbjct: 153 YTFDNFVVGAGNIYAHNVAYNVADSPGGIYNPLFIYGGAGLGKTHLLHAIGNEMEKNFPE 212 Query: 91 ----------------TRFSNIAKSLDSILIDTRK------PVLLEDIDLLDF---NDTQ 125 + D+ D R+ +L++DI L Sbjct: 213 FKIECISSEKFLNEFLASIKPMKNKNDNADEDFRRKYRDIDALLIDDIQFLSGKTETQNA 272 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 FH N + +++ + P L +R + I+ PD + ++ Sbjct: 273 FFHTFNELQMNQKQIVLISDKSPSQLNDLEDRLVTRFEQGVTTDITPPDFETRMAILKYK 332 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 I +D++ YI + ++ E ++ + +++ + + +A E+LK+ ++ Sbjct: 333 CTQFDIELDEETLIYISNNVSSNIRELEGVLKSIKSMSATMNKKPSLHIAEEILKDVRKA 392 >gi|332365094|gb|EGJ42859.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus sanguinis SK355] Length = 450 Score = 97.1 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 82/245 (33%), Gaps = 30/245 (12%) Query: 29 FFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 + D+ + A+ + ++ + + + G G GK+ L N Sbjct: 107 PIDTGLKSKYTFDNFVQGDGNIWAKAAALAVSENLAT-TYNPLFIYGGPGLGKTHLLNAI 165 Query: 85 SDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDF--- 121 ++ K + + + + +L++DI L Sbjct: 166 GNQILENIPDARVKYIPAETFINDFLEHLRLGEMDSFKKIYRSLDLLLIDDIQSLGGKKV 225 Query: 122 -NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 + F+ N++H + +++T+ P L +R K I+ PD + Sbjct: 226 STQEEFFNTFNALHGENKQIVLTSDRSPDHLDNLEERLVTRFKWGLTQNITPPDFETRIA 285 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVL 239 ++ D Y+ + + ++ E ++ + +A R IT +AAE + Sbjct: 286 ILRNKIEDLDYIFPNDTLEYLAGQFDSNVRDLEGALNDISLIARVRHLKEITIDIAAEAI 345 Query: 240 KETQQ 244 + +Q Sbjct: 346 RARKQ 350 >gi|332364164|gb|EGJ41941.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus sanguinis SK49] Length = 450 Score = 97.1 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 82/245 (33%), Gaps = 30/245 (12%) Query: 29 FFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 + D+ + A+ + ++ + + + G G GK+ L N Sbjct: 107 PIDTGLKSKYTFDNFVQGDGNIWAKAAALAVSENLAT-TYNPLFIYGGPGLGKTHLLNAI 165 Query: 85 SDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDF--- 121 ++ K + + + + +L++DI L Sbjct: 166 GNQILENIPDARVKYIPAETFINDFLEHLRLGEMDSFKKIYRSLDLLLIDDIQSLGGKKV 225 Query: 122 -NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 + F+ N++H + +++T+ P L +R K I+ PD + Sbjct: 226 STQEEFFNTFNALHGENKQIVLTSDRSPDHLDNLEERLVTRFKWGLTQNITPPDFETRIA 285 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVL 239 ++ D Y+ + + ++ E ++ + +A R IT +AAE + Sbjct: 286 ILRNKIEDLDYIFPNDTLEYLAGQFDSNVRDLEGALNDISLIARVRHLKEITIDIAAEAI 345 Query: 240 KETQQ 244 + +Q Sbjct: 346 RARKQ 350 >gi|332359496|gb|EGJ37315.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus sanguinis SK1056] Length = 450 Score = 97.1 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 82/245 (33%), Gaps = 30/245 (12%) Query: 29 FFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 + D+ + A+ + ++ + + + G G GK+ L N Sbjct: 107 PIDTGLKSKYTFDNFVQGDGNIWAKAAALAVSENLAT-TYNPLFIYGGPGLGKTHLLNAI 165 Query: 85 SDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDF--- 121 ++ K + + + + +L++DI L Sbjct: 166 GNQILENIPDARVKYIPAETFINDFLEHLRLGEMDSFKKIYRSLDLLLIDDIQSLGGKKV 225 Query: 122 -NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 + F+ N++H + +++T+ P L +R K I+ PD + Sbjct: 226 STQEEFFNTFNALHGENKQIVLTSDRSPDHLDNLEERLVTRFKWGLTQNITPPDFETRIA 285 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVL 239 ++ D Y+ + + ++ E ++ + +A R IT +AAE + Sbjct: 286 ILRNKIEDLDYIFPNDTLEYLAGQFDSNVRDLEGALNDISLIARVRHLKEITIDIAAEAI 345 Query: 240 KETQQ 244 + +Q Sbjct: 346 RARKQ 350 >gi|325695760|gb|EGD37659.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus sanguinis SK150] Length = 450 Score = 97.1 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 82/245 (33%), Gaps = 30/245 (12%) Query: 29 FFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 + D+ + A+ + ++ + + + G G GK+ L N Sbjct: 107 PIDTGLKSKYTFDNFVQGDGNIWAKAAALAVSENLAT-TYNPLFIYGGPGLGKTHLLNAI 165 Query: 85 SDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDF--- 121 ++ K + + + + +L++DI L Sbjct: 166 GNQILENIPDARVKYIPAETFINDFLEHLRLGEMDSFKKIYRSLDLLLIDDIQSLGGKKV 225 Query: 122 -NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 + F+ N++H + +++T+ P L +R K I+ PD + Sbjct: 226 STQEEFFNTFNALHGENKQIVLTSDRSPDHLDNLEERLVTRFKWGLTQNITPPDFETRIA 285 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVL 239 ++ D Y+ + + ++ E ++ + +A R IT +AAE + Sbjct: 286 ILRNKIEDLDYIFPNDTLEYLAGQFDSNVRDLEGALNDISLIARVRHLKEITIDIAAEAI 345 Query: 240 KETQQ 244 + +Q Sbjct: 346 RARKQ 350 >gi|324991866|gb|EGC23789.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus sanguinis SK405] gi|324996244|gb|EGC28154.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus sanguinis SK678] gi|325698032|gb|EGD39913.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus sanguinis SK160] gi|327458490|gb|EGF04840.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus sanguinis SK1] gi|327471608|gb|EGF17051.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus sanguinis SK408] Length = 450 Score = 97.1 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 82/245 (33%), Gaps = 30/245 (12%) Query: 29 FFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 + D+ + A+ + ++ + + + G G GK+ L N Sbjct: 107 PIDTGLKSKYTFDNFVQGDGNIWAKAAALAVSENLAT-TYNPLFIYGGPGLGKTHLLNAI 165 Query: 85 SDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDF--- 121 ++ K + + + + +L++DI L Sbjct: 166 GNQILENIPDARVKYIPAETFINDFLEHLRLGEMDSFKKIYRSLDLLLIDDIQSLGGKKV 225 Query: 122 -NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 + F+ N++H + +++T+ P L +R K I+ PD + Sbjct: 226 STQEEFFNTFNALHGENKQIVLTSDRSPDHLDNLEERLVTRFKWGLTQNITPPDFETRIA 285 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVL 239 ++ D Y+ + + ++ E ++ + +A R IT +AAE + Sbjct: 286 ILRNKIEDLDYIFPNDTLEYLAGQFDSNVRDLEGALNDISLIARVRHLKEITIDIAAEAI 345 Query: 240 KETQQ 244 + +Q Sbjct: 346 RARKQ 350 >gi|324989578|gb|EGC21524.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus sanguinis SK353] Length = 450 Score = 97.1 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 82/245 (33%), Gaps = 30/245 (12%) Query: 29 FFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 + D+ + A+ + ++ + + + G G GK+ L N Sbjct: 107 PIDTGLKSKYTFDNFVQGDGNIWAKAAALAVSENLAT-TYNPLFIYGGPGLGKTHLLNAI 165 Query: 85 SDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDF--- 121 ++ K + + + + +L++DI L Sbjct: 166 GNQILENIPDARVKYIPAETFINDFLEHLRLGEMDSFKKIYRSLDLLLIDDIQSLGGKKV 225 Query: 122 -NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 + F+ N++H + +++T+ P L +R K I+ PD + Sbjct: 226 STQEEFFNTFNALHGENKQIVLTSDRSPDHLDNLEERLVTRFKWGLTQNITPPDFETRIA 285 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVL 239 ++ D Y+ + + ++ E ++ + +A R IT +AAE + Sbjct: 286 ILRNKIEDLDYIFPNDTLEYLAGQFDSNVRDLEGALNDISLIARVRHLKEITIDIAAEAI 345 Query: 240 KETQQ 244 + +Q Sbjct: 346 RARKQ 350 >gi|323350829|ref|ZP_08086488.1| DNA-directed DNA replication initiator protein [Streptococcus sanguinis VMC66] gi|322123003|gb|EFX94706.1| DNA-directed DNA replication initiator protein [Streptococcus sanguinis VMC66] gi|325686477|gb|EGD28506.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus sanguinis SK72] gi|327463834|gb|EGF10150.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus sanguinis SK1057] Length = 450 Score = 97.1 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 82/245 (33%), Gaps = 30/245 (12%) Query: 29 FFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 + D+ + A+ + ++ + + + G G GK+ L N Sbjct: 107 PIDTGLKSKYTFDNFVQGDGNIWAKAAALAVSENLAT-TYNPLFIYGGPGLGKTHLLNAI 165 Query: 85 SDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDF--- 121 ++ K + + + + +L++DI L Sbjct: 166 GNQILENIPDARVKYIPAETFINDFLEHLRLGEMDSFKKIYRSLDLLLIDDIQSLGGKKV 225 Query: 122 -NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 + F+ N++H + +++T+ P L +R K I+ PD + Sbjct: 226 STQEEFFNTFNALHGENKQIVLTSDRSPDHLDNLEERLVTRFKWGLTQNITPPDFETRIA 285 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVL 239 ++ D Y+ + + ++ E ++ + +A R IT +AAE + Sbjct: 286 ILRNKIEDLDYIFPNDTLEYLAGQFDSNVRDLEGALNDISLIARVRHLKEITIDIAAEAI 345 Query: 240 KETQQ 244 + +Q Sbjct: 346 RARKQ 350 >gi|296267999|ref|YP_003650631.1| chromosomal replication initiator protein DnaA [Thermobispora bispora DSM 43833] gi|296090786|gb|ADG86738.1| chromosomal replication initiator protein DnaA [Thermobispora bispora DSM 43833] Length = 527 Score = 97.1 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 35/235 (14%), Positives = 82/235 (34%), Gaps = 28/235 (11%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91 + + ++ ++ A + P+ + + G SG GK+ L + ++S Sbjct: 187 NAKYTFETFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGDSGLGKTHLLHAIGHYAQSL 246 Query: 92 R--------------------FSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLFH 128 + +L++DI L+ + + FH Sbjct: 247 YDGARVRYVSSEEFTNEFINSIRDHKADEFRARYRAVDILLVDDIQFLEGKEQTQEEFFH 306 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 N++H +++++ P V L D L +R + + + P+ + ++ K Sbjct: 307 TFNTLHNASKQIVISSDRAPKQL-VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 365 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + ++ YI R+ ++ E + ++ A + LA VLK+ Sbjct: 366 QEGLAAPPEVLEYIASRISTNIRELEGALIRVTAFASLNRQPVDIELAEMVLKDL 420 >gi|126640116|ref|YP_001083100.1| chromosomal replication initiation protein [Acinetobacter baumannii ATCC 17978] Length = 398 Score = 97.1 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 87/235 (37%), Gaps = 27/235 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDS--WPSWPSRV--VILVGPSGSGKSCLANI-----WS 85 + + + + A S+ + L GP+G GK+ L Sbjct: 63 NPQFTFSLFVEGRSNQMAAETCRKVLTQLGASQHNPLFLYGPTGLGKTHLMQAVGNALLQ 122 Query: 86 DKSRSTRFSNIAKSLDSILIDTR---------------KPVLLEDIDLLDFNDTQL---F 127 K + ++S + + +L++DI LL + L F Sbjct: 123 AKPNARVMYMTSESFVQDFVSSLQKGKVEEFKKNCRSLDLLLVDDIHLLAGKEASLVEFF 182 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 + N++ +++T+ +P P L SR V + PD + ++++K Sbjct: 183 YTFNALLDESKQIILTSDRYPKELTELDPRLVSRFSWGLSVGVEPPDIETRIEILLKKAE 242 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + + A +I Q++ ++ E ++K+ ++ +G I + E LK+ Sbjct: 243 NSGVDLPRNCALFIAQQVVANVRELEGALNKVVAISRFKGAPIDLDVVRESLKDV 297 >gi|125716888|ref|YP_001034021.1| chromosomal replication initiation protein [Streptococcus sanguinis SK36] gi|125496805|gb|ABN43471.1| Chromosomal replication initiator protein dnaA, putative [Streptococcus sanguinis SK36] Length = 450 Score = 97.1 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 82/245 (33%), Gaps = 30/245 (12%) Query: 29 FFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 + D+ + A+ + ++ + + + G G GK+ L N Sbjct: 107 PIDTGLKSKYTFDNFVQGDGNIWAKAAALAVSENLAT-TYNPLFIYGGPGLGKTHLLNAI 165 Query: 85 SDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDF--- 121 ++ K + + + + +L++DI L Sbjct: 166 GNQILENIPDARVKYIPAETFINDFLEHLRLGEMDSFKKIYRSLDLLLIDDIQSLGGKKV 225 Query: 122 -NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 + F+ N++H + +++T+ P L +R K I+ PD + Sbjct: 226 STQEEFFNTFNALHGENKQIVLTSDRSPDHLDNLEERLVTRFKWGLTQNITPPDFETRIA 285 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVL 239 ++ D Y+ + + ++ E ++ + +A R IT +AAE + Sbjct: 286 ILRNKIEDLDYIFPNDTLEYLAGQFDSNVRDLEGALNDISLIARVRHLKEITIDIAAEAI 345 Query: 240 KETQQ 244 + +Q Sbjct: 346 RARKQ 350 >gi|326314824|ref|YP_004232496.1| chromosomal replication initiator protein DnaA [Acidovorax avenae subsp. avenae ATCC 19860] gi|323371660|gb|ADX43929.1| chromosomal replication initiator protein DnaA [Acidovorax avenae subsp. avenae ATCC 19860] Length = 473 Score = 97.1 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 37/250 (14%), Positives = 88/250 (35%), Gaps = 26/250 (10%) Query: 19 DQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGS 75 P ++ F ++ + L+ +A A P + + + G G Sbjct: 123 STPADEPAAAPFRSRLNPALTFETLVEGTANRMARSAAMHVAGSPGHLYNPLFIYGGVGL 182 Query: 76 GKSCLANI-----WSDKSRSTRFSNIAKSLDSILIDTR---------------KPVLLED 115 GK+ L + DK + A+ S ++ +L++D Sbjct: 183 GKTHLVHAVGNRLLQDKPDAKVLYIHAEQFVSDVVKAYQRRTFDEFKAHYHSLDLLLIDD 242 Query: 116 IDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 + D + F+ ++ S ++MT+ T+P L SR + V I Sbjct: 243 VQFFANKDRTQEEFFNAFEALLAKKSHIVMTSDTYPKGLANIHERLVSRFDSGLTVTIEP 302 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232 P+ + +++ + +++A ++ + + ++ E + K+ + ++ Sbjct: 303 PELEMRVAILINKARAESAEMPEEVAFFVAKNVRSNVRELEGALRKILAYSRFNQKEVSI 362 Query: 233 SLAAEVLKET 242 LA E L++ Sbjct: 363 QLAREALRDL 372 >gi|296132602|ref|YP_003639849.1| chromosomal replication initiator protein DnaA [Thermincola sp. JR] gi|296031180|gb|ADG81948.1| chromosomal replication initiator protein DnaA [Thermincola potens JR] Length = 339 Score = 97.1 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 42/270 (15%), Positives = 95/270 (35%), Gaps = 37/270 (13%) Query: 4 MKEDYSFFVPD-----KQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDS 58 +K + SF P+ + +L + D +V + A + Sbjct: 74 LKVELSFIFPETGEQMSESEINSSAPPTRL------NPRYTFDTFVVGNNNRLAHAAALA 127 Query: 59 WPSWPSRV---VILVGPSGSGKSCLANIWSDKS-----RSTRFSNIAKSLDSILIDTRK- 109 P++V + + G G GK+ L + + + A++ LI+ + Sbjct: 128 VAKSPAKVYNPLFICGGVGLGKTHLIQAIGNFALENNPGARVAYISAEAFTMELINAIRD 187 Query: 110 --------------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 ++++DI L + + F+ N++++ + +++ + P Sbjct: 188 DRTAEFRSKYRNMDILIIDDIHYLAGKERTQEEFFYTFNALYEANKQIIVAGKQAPKQLP 247 Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 +CSR + + I PD + +++ K + + + YI + + Sbjct: 248 ALDESICSRFEGGLIADIQPPDLETRTEILRKRAEAENVHVPGDVITYIADQFHSNTREL 307 Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKET 242 E + ++ A + IT LA E LK Sbjct: 308 EGALTRIILFASVKQSQITLDLADEALKGM 337 >gi|260553772|ref|ZP_05826042.1| chromosomal replication initiator protein DnaA [Acinetobacter sp. RUH2624] gi|260405076|gb|EEW98576.1| chromosomal replication initiator protein DnaA [Acinetobacter sp. RUH2624] Length = 465 Score = 97.1 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 39/238 (16%), Positives = 87/238 (36%), Gaps = 33/238 (13%) Query: 35 CLGISRDDLLVHSAIEQAVRLID-------SWPSWPSRVVILVGPSGSGKSCLANI---- 83 + + + + A + P + L GP+G GK+ L Sbjct: 130 NPQFTFSLFVEGRSNQMAAETCRKVLTQLGASQHNP---LFLYGPTGLGKTHLMQAVGNA 186 Query: 84 -WSDKSRSTRFSNIAKSLDSILIDTR---------------KPVLLEDIDLLDFNDTQL- 126 K + ++S + + +L++DI LL + L Sbjct: 187 LLQAKPNARVMYMTSESFVQDFVSSLQKGKVEEFKKNCRSLDLLLVDDIHLLAGKEASLV 246 Query: 127 --FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 F+ N++ +++T+ +P P L SR V + PD + ++++K Sbjct: 247 EFFYTFNALLDESKQIILTSDRYPKELTELDPRLVSRFSWGLSVGVEPPDIETRIEILLK 306 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + + A +I Q++ ++ E ++K+ ++ +G I + E LK+ Sbjct: 307 KAENSGVDLPRNCALFIAQQVVANVRELEGALNKVVAISRFKGAPIDLDVVRESLKDV 364 >gi|255348609|ref|ZP_05380616.1| chromosomal replication initiation protein [Chlamydia trachomatis 70] gi|255503149|ref|ZP_05381539.1| chromosomal replication initiation protein [Chlamydia trachomatis 70s] gi|255506827|ref|ZP_05382466.1| chromosomal replication initiation protein [Chlamydia trachomatis D(s)2923] gi|289525289|emb|CBJ14765.1| Chromosomal replication initiation protein [Chlamydia trachomatis Sweden2] gi|296434838|gb|ADH17016.1| chromosomal replication initiation protein [Chlamydia trachomatis E/150] gi|296438558|gb|ADH20711.1| chromosomal replication initiation protein [Chlamydia trachomatis E/11023] Length = 456 Score = 96.8 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 32/213 (15%), Positives = 72/213 (33%), Gaps = 28/213 (13%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWP-------SWPSRVVILVGPSGSGKSCLANIWSDK 87 +S + LV + VR++ + +P + L GP SGK+ L Sbjct: 104 DPNMSFANFLVTPENDLPVRILQEFAKVSEQGKGFPFNPIYLFGPESSGKTHLMQAAVGG 163 Query: 88 SRSTRFSNIAKSLD------------------SILIDTRKPVLLEDIDLLDF---NDTQL 126 R + + + + + +EDI++L + Sbjct: 164 LREAGVKTLYVTSELFTEHLVSAIRSGEMQRFRAFYRNVEALFIEDIEVLSGKGATQEEF 223 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH NS+H +++++ P L SR + + +S + L+ + + Sbjct: 224 FHTFNSLHTEGKLIVISSTFAPGDLKAMEERLISRFEWGISIPVSPLTREGLKSFLERRT 283 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 I I++ +++Q + + + + Sbjct: 284 EKLNIRIEETALDFLIQALSSHVKSLLHALTTL 316 >gi|1079499|gb|AAC43711.1| DnaA protein [Mycobacterium smegmatis] gi|1585267|prf||2124373B dnaA gene Length = 495 Score = 96.8 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 35/219 (15%), Positives = 80/219 (36%), Gaps = 23/219 (10%) Query: 47 SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS---------TRFSNIA 97 ++ A PS + + GSGK+ L + + ++ Sbjct: 142 ASNRFAHARRSRSPSAARPTPVFICRVGSGKTHLLHAHGNYAQRLFPGMRVKYASTEEFT 201 Query: 98 KSLDSILIDTRKP-----------VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMT 143 + L D RK +L++DI ++ + + FH N++H + ++++ Sbjct: 202 NDFINSLRDDRKASFKRSYRDIDILLVDDIQFIEGKEGIQEEFFHTFNTLHNSNKQIVIS 261 Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203 + P +R + + + P+ + ++ K ++ + + I Sbjct: 262 SDRPPKQLATLEDRFRTRFEWGLITDVQPPELETRIAILRKKAQMDRLDVPDDVLELIAS 321 Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +ER++ E + ++ A I RSLA VL++ Sbjct: 322 SIERNIRELEGALIRVTAFASLNKTRIDRSLAEVVLRDL 360 >gi|221218113|ref|ZP_03589579.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi 72a] gi|224533619|ref|ZP_03674208.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi CA-11.2a] gi|225548587|ref|ZP_03769634.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi 94a] gi|225549615|ref|ZP_03770581.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi 118a] gi|221192061|gb|EEE18282.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi 72a] gi|224513292|gb|EEF83654.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi CA-11.2a] gi|225369892|gb|EEG99339.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi 118a] gi|225370617|gb|EEH00053.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi 94a] Length = 486 Score = 96.8 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 37/209 (17%), Positives = 79/209 (37%), Gaps = 26/209 (12%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRVV---ILVGPSGSGKSCLANIWSDKSRST-- 91 + ++ ++ S + A S P + ++ G G GK+ L +K+ Sbjct: 146 RYTFENFIIGSNNKLAYNASLSISKNPGKKYNPCLIYGGVGLGKTHLLQSIGNKTEELHH 205 Query: 92 ---RFSNIAKSLDSILIDTRKP---------------VLLEDIDLLDFND---TQLFHII 130 A++ + +++ K +L++DI L + +LFH Sbjct: 206 NLKILYVTAENFLNEFVESIKTHETKKFKKKYRYLDMLLIDDIHDLQKKEGIQEELFHTF 265 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N++++ + L+ T P L SR V IS P+ + ++ K + Sbjct: 266 NALYEDNKQLVFTCDRSPSELTNFTDRLKSRFTRGLNVDISKPNFELRAAIVEKKAEEDG 325 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 I + K + + Q++ ++ E V K+ Sbjct: 326 INVPKNILNLVAQKVTTNVRDLEAAVTKL 354 >gi|154483923|ref|ZP_02026371.1| hypothetical protein EUBVEN_01629 [Eubacterium ventriosum ATCC 27560] gi|149735414|gb|EDM51300.1| hypothetical protein EUBVEN_01629 [Eubacterium ventriosum ATCC 27560] Length = 462 Score = 96.8 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 41/250 (16%), Positives = 84/250 (33%), Gaps = 33/250 (13%) Query: 29 FFSFPRCLGISRDDLLVHSAIEQA----VRLIDSWPSWPSRVVILVGPSGSGKSCLAN-- 82 + D +V S A + + +S + + G G GK+ L Sbjct: 115 ILDANLNKKYTFDSFVVGSNNNIAQVTSLAVAESPGD-VYNPLFIYGGVGLGKTHLIQSI 173 Query: 83 ---IWSDKSRSTRFSNIAKSLDSILID--------------------TRKPVLLEDIDLL 119 + + + ++S + +ID + +L++DI + Sbjct: 174 GNFVLKNNPSAKVLYTTSESFTNEVIDLLRKKKTNQEEIIEFRKKYRSVDVLLIDDIQFI 233 Query: 120 DFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 D ++F+I N + +++T+ P L SR + V I PD + Sbjct: 234 SGRDRTQEEIFNIFNDLFMKHKQIVLTSDKKPKDMEGIAERLISRFEQGLTVDIQNPDYE 293 Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236 ++ K ID+ + YI ++ E + ++ + IT A+ Sbjct: 294 TRMAILKKKAETSGYNIDEGVLQYIANHFVSNVRELEGSLTRVITFSKISHSPITVDFAS 353 Query: 237 EVLKETQQCD 246 VL+E + Sbjct: 354 GVLQELVAPN 363 >gi|264676137|ref|YP_003276043.1| chromosomal replication initiator protein DnaA [Comamonas testosteroni CNB-2] gi|299530928|ref|ZP_07044342.1| chromosomal replication initiation protein [Comamonas testosteroni S44] gi|262206649|gb|ACY30747.1| chromosomal replication initiator protein DnaA [Comamonas testosteroni CNB-2] gi|298721149|gb|EFI62092.1| chromosomal replication initiation protein [Comamonas testosteroni S44] Length = 468 Score = 96.8 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 34/240 (14%), Positives = 84/240 (35%), Gaps = 26/240 (10%) Query: 29 FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN--- 82 F ++ + L+ +A A P + + + G G GK+ L + Sbjct: 128 VFRTRLNPALTFETLVEGTANRMARSAAMHVAGSPGHLYNPLFIYGGVGLGKTHLVHAVG 187 Query: 83 --------------IWSDKSRSTRFSNIAKSLDSILIDTR---KPVLLEDIDLLDFND-- 123 I +++ S + + +L++D+ D Sbjct: 188 NQLLKDKPDAKILYIHAEQFVSDVVKAYQRRTFDEFKERYHSLDLLLIDDVQFFANKDRT 247 Query: 124 -TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 + F+ ++ S ++MT+ T+P L SR + V I P+ + ++ Sbjct: 248 QEEFFNAFEALLAKKSHIVMTSDTYPKGLANIHERLVSRFDSGLTVAIEPPELEMRVAIL 307 Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + +++A ++ + + ++ E + K+ + ++ LA E L++ Sbjct: 308 INKARAENADMPEEVAFFVAKNVRSNVRELEGALRKILAYSRFNQKEVSIQLAREALRDL 367 >gi|24378533|ref|NP_720488.1| chromosomal replication initiation protein [Streptococcus mutans UA159] gi|290579527|ref|YP_003483919.1| chromosomal replication initiator protein [Streptococcus mutans NN2025] gi|38257598|sp|Q8DWN9|DNAA_STRMU RecName: Full=Chromosomal replication initiator protein DnaA gi|24376381|gb|AAN57794.1|AE014853_1 chromosomal replication initiator protein, DnaA [Streptococcus mutans UA159] gi|254996426|dbj|BAH87027.1| chromosomal replication initiator protein [Streptococcus mutans NN2025] Length = 452 Score = 96.8 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 41/267 (15%), Positives = 90/267 (33%), Gaps = 40/267 (14%) Query: 13 PDKQKNDQPKNKEEQLFF---SFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRV 66 P +N + E L F S D+ ++ A + P Sbjct: 90 PQISQNKTAELATETLPFVQNDL--NPKYSFDNFVIGDENRWAFTASVSVADLPGTTYNP 147 Query: 67 VILVGPSGSGKSCLANIWSDKSRS------TRFSNIAKSLDSILIDTR------------ 108 + + G G GK+ L N + + ++ + ++ ++ R Sbjct: 148 LFIYGGPGLGKTHLLNAIGNSVLASNPKARIKYISAENFINEFVVHIRLQNMDELKKKFR 207 Query: 109 --KPVLLEDIDLLD-----FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161 +L++DI L + F+ N++H + +++T+ P L +R Sbjct: 208 NLDLLLIDDIQSLAKKSLAATQEEFFNTFNALHDNNKQIVLTSDRTPDDLNDLEQRLVTR 267 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 K V I+ PD + ++ + + Y+ + + ++ E + + Sbjct: 268 FKWGLTVNITPPDFETRVAILNNKIQEYNYSFLSETIEYLAGQFDSNVRDLEGALKDI-- 325 Query: 222 LALSRGMG----ITRSLAAEVLKETQQ 244 +L IT +AAE ++ +Q Sbjct: 326 -SLVANFKKLDVITVEVAAEAIRARKQ 351 >gi|237784638|ref|YP_002905343.1| chromosomal replication initiator protein [Corynebacterium kroppenstedtii DSM 44385] gi|237757550|gb|ACR16800.1| chromosomal replication initiator protein [Corynebacterium kroppenstedtii DSM 44385] Length = 605 Score = 96.8 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 38/261 (14%), Positives = 95/261 (36%), Gaps = 28/261 (10%) Query: 14 DKQKNDQPKNKEEQLFFSFPR--CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VI 68 N +P+ ++EQ S + D+L+ + P++ + Sbjct: 245 GYINNARPQRRQEQKPDSERSWLNENYTFDNLVAGEGNRVVRAAAIAVAENPAQAYNPLF 304 Query: 69 LVGPSGSGKSCLANIWSDKSRS------TRFSNIAKSLDSILIDTRK------------- 109 + G SG GK+ + + ++ R+ +I + + + R Sbjct: 305 IWGGSGLGKTHILHAIGHRALELRPNLRVRYVSIEEYTNEWINSIRNNRGEDFKRKYRSF 364 Query: 110 -PVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 +L++DI L + FH N++H +++ + P P L +R + Sbjct: 365 DILLVDDIQFLAGKPETQIEFFHNFNALHGAQKQIVLCSDRSPKELTELEPRLRTRFQWG 424 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 I PD + ++ + ++ ++I ++ S+ E ++K+ ++ Sbjct: 425 FTQDIQKPDLETRIAILRLKAERENAQVPSEVLSFIAEQKAESVRELEGALNKVLIVSSI 484 Query: 226 RGMGITRSLAAEVLKETQQCD 246 + +T +A + L++ + Sbjct: 485 QHTPVTLEMARDQLQDLVAPE 505 >gi|260431698|ref|ZP_05785669.1| chromosomal replication initiator protein DnaA [Silicibacter lacuscaerulensis ITI-1157] gi|260415526|gb|EEX08785.1| chromosomal replication initiator protein DnaA [Silicibacter lacuscaerulensis ITI-1157] Length = 467 Score = 96.8 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 36/244 (14%), Positives = 81/244 (33%), Gaps = 31/244 (12%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANI--WSDK 87 P + D +V E A ++L G G GK+ L + W K Sbjct: 126 PLDARFTFDTFVVGKPNELAHAAARRVSEGGPVTFNPLVLYGGVGLGKTHLMHAIAWELK 185 Query: 88 SRSTRFSNIAKSLDSI------------------LIDTRKPVLLEDIDLLDFND---TQL 126 ++ + + S + L + ++++D+ + D + Sbjct: 186 TKRPELNVLYLSAEQFMYRFVQALRERRMMDFKHLFRSVDVLMVDDVQFIAGKDSTQEEF 245 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH N++ + ++++A P + SRL+ VV + D + ++ Sbjct: 246 FHTFNALVDQNKQIIISADRAPGEIKDLEERVKSRLQCGLVVDLHPTDYELRLGILQTKV 305 Query: 187 ADR-----QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I + ++ R+ ++ E + ++ A G I L + L + Sbjct: 306 QQYTKTYPDLKIADGVLEFLAHRISTNVRVLEGALTRLFAFASLVGREIDMDLTQDCLAD 365 Query: 242 TQQC 245 + Sbjct: 366 VLRA 369 >gi|33603963|ref|NP_891523.1| chromosomal replication initiation protein [Bordetella bronchiseptica RB50] gi|61212740|sp|Q7WDJ9|DNAA_BORBR RecName: Full=Chromosomal replication initiator protein DnaA gi|33568939|emb|CAE35353.1| chromosomal replication initiator protein [Bordetella bronchiseptica RB50] Length = 480 Score = 96.8 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 83/232 (35%), Gaps = 27/232 (11%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIW-----SDKSR 89 ++ ++ + A + A P + L G G GK+ L + + + Sbjct: 148 LTFENFVTGKANQLARAAALQVAENPGTSYNPLFLYGGVGLGKTHLIHAIGNAMVAAGTG 207 Query: 90 STRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFNDTQLFHIINSIHQY------ 136 A S ++ + +D +DLL +D Q F N + Sbjct: 208 VRVRYVHADQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKNRTQEEFFYAFE 267 Query: 137 -----DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 +++T+ T+P L SR + V I P+ + ++++ + Sbjct: 268 AMVAQRKQIIITSDTYPKELSGIDSRLISRFDSGLTVAIEPPELEMRVAILLRKAESEGV 327 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI-TRSLAAEVLKET 242 + +++A +I + + ++ E + K+ A G + T + E LK+ Sbjct: 328 PMPEEVAFFIAKHLRSNVRELEGALRKVLAYARFHGRDVLTVDVCKEALKDL 379 >gi|326386028|ref|ZP_08207652.1| chromosomal replication initiator protein DnaA [Novosphingobium nitrogenifigens DSM 19370] gi|326209253|gb|EGD60046.1| chromosomal replication initiator protein DnaA [Novosphingobium nitrogenifigens DSM 19370] Length = 506 Score = 96.8 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 36/242 (14%), Positives = 82/242 (33%), Gaps = 33/242 (13%) Query: 35 CLGISRDDLLVHSAIEQAV------RLIDSWPSWPSRVVILVGPSGSGKSCLANIW---- 84 ++ + + S AV +++ P + L +G GK+ L + Sbjct: 171 DPSLTFAEFVTGSGNVLAVNAAQRMAALETPQFSP---LYLKASTGQGKTHLLHAIGHAY 227 Query: 85 -SDKSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLL---DFNDTQ 125 + K + F A+ + + +L++DI + + Sbjct: 228 AAAKPGARIFYCSAERFMIEFVQAMRQHEMIEFKARLRSFDLLLVDDIQFIIGKASTQEE 287 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 H I+++ L++ A P + L SRL V I D + K++ Sbjct: 288 FLHTIDALLSAGKRLVVAADRAPQALDGVEQRLLSRLSMGLVADIQPADIELRRKILQHR 347 Query: 186 FAD-RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 + + + ++ + + R++ ++K+ A G ++ LA E L + Sbjct: 348 LSRFAATAVPDDVIEFLARTINRNVRELVGGLNKLIAYAQLTGQPVSLQLAEEQLTDILN 407 Query: 245 CD 246 + Sbjct: 408 AN 409 >gi|221069747|ref|ZP_03545852.1| chromosomal replication initiator protein DnaA [Comamonas testosteroni KF-1] gi|220714770|gb|EED70138.1| chromosomal replication initiator protein DnaA [Comamonas testosteroni KF-1] Length = 468 Score = 96.8 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 34/240 (14%), Positives = 84/240 (35%), Gaps = 26/240 (10%) Query: 29 FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN--- 82 F ++ + L+ +A A P + + + G G GK+ L + Sbjct: 128 VFRTRLNPALTFETLVEGTANRMARSAAMHVAGSPGHLYNPLFIYGGVGLGKTHLVHAVG 187 Query: 83 --------------IWSDKSRSTRFSNIAKSLDSILIDTR---KPVLLEDIDLLDFND-- 123 I +++ S + + +L++D+ D Sbjct: 188 NQLLKDKPDAKILYIHAEQFVSDVVKAYQRRTFDEFKERYHSLDLLLIDDVQFFANKDRT 247 Query: 124 -TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 + F+ ++ S ++MT+ T+P L SR + V I P+ + ++ Sbjct: 248 QEEFFNAFEALLAKKSHIVMTSDTYPKGLANIHERLVSRFDSGLTVAIEPPELEMRVAIL 307 Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + +++A ++ + + ++ E + K+ + ++ LA E L++ Sbjct: 308 INKARAENADMPEEVAFFVAKNVRSNVRELEGALRKILAYSRFNQKEVSIQLAREALRDL 367 >gi|294673982|ref|YP_003574598.1| chromosomal replication initiator protein DnaA [Prevotella ruminicola 23] gi|294471753|gb|ADE81142.1| chromosomal replication initiator protein DnaA [Prevotella ruminicola 23] Length = 473 Score = 96.8 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 39/255 (15%), Positives = 88/255 (34%), Gaps = 31/255 (12%) Query: 19 DQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQA----VRLIDSWPSWPSRVVILVGPSG 74 D P+ ++QL G + + ++ + + + + + GPSG Sbjct: 124 DAPR--QQQLNPQLDTKKGFH--NYIEGNSNKLPRTVGLSIAEHPGKTTFNPFFIYGPSG 179 Query: 75 SGKSCLANI----WSDKSRSTRFSNIAKSLDSI----------------LIDTRKPVLLE 114 GK+ L N + + R ++ L + + ++++ Sbjct: 180 CGKTHLINAIGLKCCELYPNKRVLYVSARLFQVQFTDSVRQNTTNDFINFYQSIDVLIVD 239 Query: 115 DIDLLDFNDTQL---FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 DI + L FHI + + + +++ + PV L +R + ++ Sbjct: 240 DIQEWVNSPKTLDTFFHIFDHLFRIGKQIILASDRPPVDLTGVKDRLLTRFACGLIAELE 299 Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231 P+ ++ + I + YI Q S+ E +V+ + ++ I Sbjct: 300 KPNVQLCVDILNAKCKRDGLKIPADVIEYIAQTANGSVRDLEGVVNSLMAYSIVYNSNID 359 Query: 232 RSLAAEVLKETQQCD 246 LA V+K + + D Sbjct: 360 MKLAERVIKRSVKVD 374 >gi|33591700|ref|NP_879344.1| chromosomal replication initiation protein [Bordetella pertussis Tohama I] gi|33598884|ref|NP_886527.1| chromosomal replication initiation protein [Bordetella parapertussis 12822] gi|61212733|sp|Q7VSE0|DNAA_BORPE RecName: Full=Chromosomal replication initiator protein DnaA gi|61212736|sp|Q7W2K5|DNAA_BORPA RecName: Full=Chromosomal replication initiator protein DnaA gi|33571343|emb|CAE44820.1| chromosomal replication initiator protein [Bordetella pertussis Tohama I] gi|33575014|emb|CAE39680.1| chromosomal replication initiator protein [Bordetella parapertussis] gi|332381119|gb|AEE65966.1| chromosomal replication initiation protein [Bordetella pertussis CS] Length = 469 Score = 96.8 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 83/232 (35%), Gaps = 27/232 (11%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIW-----SDKSR 89 ++ ++ + A + A P + L G G GK+ L + + + Sbjct: 137 LTFENFVTGKANQLARAAALQVAENPGTSYNPLFLYGGVGLGKTHLIHAIGNAMVAAGTG 196 Query: 90 STRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFNDTQLFHIINSIHQY------ 136 A S ++ + +D +DLL +D Q F N + Sbjct: 197 VRVRYVHADQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKNRTQEEFFYAFE 256 Query: 137 -----DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 +++T+ T+P L SR + V I P+ + ++++ + Sbjct: 257 AMVAQRKQIIITSDTYPKELSGIDSRLISRFDSGLTVAIEPPELEMRVAILLRKAESEGV 316 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI-TRSLAAEVLKET 242 + +++A +I + + ++ E + K+ A G + T + E LK+ Sbjct: 317 PMPEEVAFFIAKHLRSNVRELEGALRKVLAYARFHGRDVLTVDVCKEALKDL 368 >gi|169632030|ref|YP_001705766.1| chromosomal replication initiation protein [Acinetobacter baumannii SDF] gi|226735532|sp|B0VMK0|DNAA_ACIBS RecName: Full=Chromosomal replication initiator protein DnaA gi|169150822|emb|CAO99422.1| DNA replication initiator protein, transcriptional regulator of replication and housekeeping genes [Acinetobacter baumannii] Length = 465 Score = 96.8 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 87/235 (37%), Gaps = 27/235 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDS--WPSWPSRV--VILVGPSGSGKSCLANI-----WS 85 + + + + A S+ + L GP+G GK+ L Sbjct: 130 NPQFTFSLFVEGRSNQMAAETCRKVLTQLGASQHNPLFLYGPTGLGKTHLMQAVGNALLQ 189 Query: 86 DKSRSTRFSNIAKSLDSILIDTR---------------KPVLLEDIDLLDFNDTQL---F 127 K + ++S + + +L++DI LL + L F Sbjct: 190 AKPNARVMYMTSESFVQDFVSSLQKGKVEEFKKNCRSLDLLLVDDIHLLAGKEASLVEFF 249 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 + N++ +++T+ +P P L SR V + PD + ++++K Sbjct: 250 YTFNALLDESKQIILTSDRYPKELTELDPRLVSRFSWGLSVGVEPPDIETRIEILLKKAE 309 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + + A +I Q++ ++ E ++K+ ++ +G I + E LK+ Sbjct: 310 NSGVDLPRNCALFIAQQVVANVRELEGALNKVVAISRFKGAPIDLDVVRESLKDV 364 >gi|312866847|ref|ZP_07727060.1| chromosomal replication initiator protein DnaA [Streptococcus parasanguinis F0405] gi|311097630|gb|EFQ55861.1| chromosomal replication initiator protein DnaA [Streptococcus parasanguinis F0405] Length = 452 Score = 96.4 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 35/268 (13%), Positives = 90/268 (33%), Gaps = 36/268 (13%) Query: 12 VPDKQKNDQPKNKEEQLF------FSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPS 61 +P ++ + L + D+ + A+ + ++ + Sbjct: 86 IPSNHSSENRRLSSGSLTTEPLPKIDTGLKSKYTFDNFVQGDGNIWAKAAALAVSENLAT 145 Query: 62 WPSRVVILVGPSGSGKSCLANIWSDK-----SRSTRFSNIAKSLDSILID---------- 106 + + G G GK+ L N ++ + A++ + ++ Sbjct: 146 -TYNPLFIYGGPGLGKTHLLNAIGNQILENIPNARVKYVPAETFINEFLEHLRLGEMKTF 204 Query: 107 -----TRKPVLLEDIDLLDF----NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 + +L++DI L + F+ N++H + +++T+ P Sbjct: 205 KNTYRSLDLLLIDDIQSLGGKKVTTQEEFFNTFNALHSDNKQIVLTSDRSPDHLDSLEER 264 Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 L +R K I+ PD + ++ D Y+ + + ++ E ++ Sbjct: 265 LVTRFKWGLTQNITPPDFETRIAILRNKIEDLDYIFPNDTLEYLAGQFDSNVRDLEGALN 324 Query: 218 KMDNLALSRG-MGITRSLAAEVLKETQQ 244 + +A + IT +AAE ++ + Sbjct: 325 DISLMAKVKKLKEITIDVAAEAIRARKN 352 >gi|222109226|ref|YP_002551490.1| chromosomal replication initiation protein [Acidovorax ebreus TPSY] gi|221728670|gb|ACM31490.1| chromosomal replication initiator protein DnaA [Acidovorax ebreus TPSY] Length = 473 Score = 96.4 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 37/240 (15%), Positives = 88/240 (36%), Gaps = 26/240 (10%) Query: 29 FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI-- 83 F ++ + L+ +A A P + + + G G GK+ L + Sbjct: 133 AFRTRLNPALTFETLVEGTANRMARSAAMHVAGSPGHLYNPLFIYGGVGLGKTHLVHAVG 192 Query: 84 ---WSDKSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND---------- 123 D+ + A+ S ++ + + +D +DLL +D Sbjct: 193 NKLLQDRPDAKVLYIHAEQFVSDVVKSYQRRTFDDFKERYHSLDLLLIDDVQFFANKDRT 252 Query: 124 -TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 + F+ ++ S ++MT+ T+P L SR + V I P+ + ++ Sbjct: 253 QEEFFNAFEALLAKKSHIVMTSDTYPKGLANIHERLVSRFDSGLTVAIEPPELEMRVAIL 312 Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + +++A ++ + + ++ E + K+ + ++ LA E L++ Sbjct: 313 INKARAEGSEMPEEVAFFVAKNVRSNVRELEGALRKILAYSRFNQKEVSIQLAREALRDL 372 >gi|317123178|ref|YP_004097290.1| chromosomal replication initiator protein DnaA [Intrasporangium calvum DSM 43043] gi|315587266|gb|ADU46563.1| chromosomal replication initiator protein DnaA [Intrasporangium calvum DSM 43043] Length = 579 Score = 96.4 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 33/249 (13%), Positives = 81/249 (32%), Gaps = 27/249 (10%) Query: 20 QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSG 76 Q + + Q + D ++ ++ + + + G SG G Sbjct: 227 QQRPEPAQAS-DTRLNPKYTFDTFVIGASNRFGHAAAIAVAEAPAKAYNPLFVYGESGLG 285 Query: 77 KSCLANIWSDKSRS--------------------TRFSNIAKSLDSILIDTRKPVLLEDI 116 K+ L + +R+ + S + +L++DI Sbjct: 286 KTHLLHAIGHYARTMFPNVRVRYVNSEEFTNDFINSIRDDKASAFQSRYRSVDVLLIDDI 345 Query: 117 DLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 L + FH N++H + +++T+ P + +R ++ + + P Sbjct: 346 QFLQGKLQTQEEFFHTFNTLHNANKQIVITSDLPPKELSGFEDRMRTRFESGLLTDVQPP 405 Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233 D + ++ K ++ + + YI ++ E + ++ + + Sbjct: 406 DLETRIAILRKKAIQERMSVPDDVLEYIASNFSTNIRELEGALIRVTAFSNLNRQAVDLP 465 Query: 234 LAAEVLKET 242 LA VLK+ Sbjct: 466 LAEVVLKDV 474 >gi|226735872|sp|A3M0Q4|DNAA_ACIBT RecName: Full=Chromosomal replication initiator protein DnaA gi|193075921|gb|ABO10498.2| DNA replication initiator protein [Acinetobacter baumannii ATCC 17978] Length = 465 Score = 96.4 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 87/235 (37%), Gaps = 27/235 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDS--WPSWPSRV--VILVGPSGSGKSCLANI-----WS 85 + + + + A S+ + L GP+G GK+ L Sbjct: 130 NPQFTFSLFVEGRSNQMAAETCRKVLTQLGASQHNPLFLYGPTGLGKTHLMQAVGNALLQ 189 Query: 86 DKSRSTRFSNIAKSLDSILIDTR---------------KPVLLEDIDLLDFNDTQL---F 127 K + ++S + + +L++DI LL + L F Sbjct: 190 AKPNARVMYMTSESFVQDFVSSLQKGKVEEFKKNCRSLDLLLVDDIHLLAGKEASLVEFF 249 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 + N++ +++T+ +P P L SR V + PD + ++++K Sbjct: 250 YTFNALLDESKQIILTSDRYPKELTELDPRLVSRFSWGLSVGVEPPDIETRIEILLKKAE 309 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + + A +I Q++ ++ E ++K+ ++ +G I + E LK+ Sbjct: 310 NSGVDLPRNCALFIAQQVVANVRELEGALNKVVAISRFKGAPIDLDVVRESLKDV 364 >gi|169794207|ref|YP_001712000.1| chromosomal replication initiation protein [Acinetobacter baumannii AYE] gi|184156325|ref|YP_001844664.1| chromosomal replication initiation protein [Acinetobacter baumannii ACICU] gi|213155390|ref|YP_002317435.1| chromosomal replication initiator protein DnaA [Acinetobacter baumannii AB0057] gi|215481762|ref|YP_002323944.1| chromosomal replication initiator protein DnaA [Acinetobacter baumannii AB307-0294] gi|239503909|ref|ZP_04663219.1| chromosomal replication initiator protein DnaA [Acinetobacter baumannii AB900] gi|260558093|ref|ZP_05830304.1| chromosomal replication initiator protein DnaA [Acinetobacter baumannii ATCC 19606] gi|301345945|ref|ZP_07226686.1| chromosomal replication initiation protein [Acinetobacter baumannii AB056] gi|301512869|ref|ZP_07238106.1| chromosomal replication initiation protein [Acinetobacter baumannii AB058] gi|301594680|ref|ZP_07239688.1| chromosomal replication initiation protein [Acinetobacter baumannii AB059] gi|332854713|ref|ZP_08435500.1| replication initiator protein DnaA [Acinetobacter baumannii 6013150] gi|332865593|ref|ZP_08436433.1| replication initiator protein DnaA [Acinetobacter baumannii 6013113] gi|332873307|ref|ZP_08441262.1| replication initiator protein DnaA [Acinetobacter baumannii 6014059] gi|226735529|sp|B7GUX5|DNAA_ACIB3 RecName: Full=Chromosomal replication initiator protein DnaA gi|226735530|sp|B7IBH7|DNAA_ACIB5 RecName: Full=Chromosomal replication initiator protein DnaA gi|226735531|sp|B2HZA7|DNAA_ACIBC RecName: Full=Chromosomal replication initiator protein DnaA gi|226735771|sp|B0VAF3|DNAA_ACIBY RecName: Full=Chromosomal replication initiator protein DnaA gi|169147134|emb|CAM84993.1| DNA replication initiator protein, transcriptional regulator of replication and housekeeping genes [Acinetobacter baumannii AYE] gi|183207919|gb|ACC55317.1| ATPase [Acinetobacter baumannii ACICU] gi|213054550|gb|ACJ39452.1| chromosomal replication initiator protein DnaA [Acinetobacter baumannii AB0057] gi|213987186|gb|ACJ57485.1| chromosomal replication initiator protein DnaA [Acinetobacter baumannii AB307-0294] gi|260408447|gb|EEX01754.1| chromosomal replication initiator protein DnaA [Acinetobacter baumannii ATCC 19606] gi|322506194|gb|ADX01648.1| dnaA, Chromosomal replication initiator protein [Acinetobacter baumannii 1656-2] gi|323516070|gb|ADX90451.1| chromosomal replication initiation protein [Acinetobacter baumannii TCDC-AB0715] gi|332727870|gb|EGJ59272.1| replication initiator protein DnaA [Acinetobacter baumannii 6013150] gi|332735245|gb|EGJ66322.1| replication initiator protein DnaA [Acinetobacter baumannii 6013113] gi|332738513|gb|EGJ69385.1| replication initiator protein DnaA [Acinetobacter baumannii 6014059] Length = 465 Score = 96.4 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 87/235 (37%), Gaps = 27/235 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDS--WPSWPSRV--VILVGPSGSGKSCLANI-----WS 85 + + + + A S+ + L GP+G GK+ L Sbjct: 130 NPQFTFSLFVEGRSNQMAAETCRKVLTQLGASQHNPLFLYGPTGLGKTHLMQAVGNALLQ 189 Query: 86 DKSRSTRFSNIAKSLDSILIDTR---------------KPVLLEDIDLLDFNDTQL---F 127 K + ++S + + +L++DI LL + L F Sbjct: 190 AKPNARVMYMTSESFVQDFVSSLQKGKVEEFKKNCRSLDLLLVDDIHLLAGKEASLVEFF 249 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 + N++ +++T+ +P P L SR V + PD + ++++K Sbjct: 250 YTFNALLDESKQIILTSDRYPKELTELDPRLVSRFSWGLSVGVEPPDIETRIEILLKKAE 309 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + + A +I Q++ ++ E ++K+ ++ +G I + E LK+ Sbjct: 310 NSGVDLPRNCALFIAQQVVANVRELEGALNKVVAISRFKGAPIDLDVVRESLKDV 364 >gi|311103225|ref|YP_003976078.1| chromosomal replication initiation protein [Achromobacter xylosoxidans A8] gi|310757914|gb|ADP13363.1| chromosomal replication initiation protein [Achromobacter xylosoxidans A8] Length = 487 Score = 96.4 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 83/232 (35%), Gaps = 27/232 (11%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIW-----SDKSR 89 ++ ++ + A + A P + L G G GK+ L + + + Sbjct: 155 LTFENFVTGKANQLARAAALQVAENPGTSYNPLFLYGGVGLGKTHLIHAIGNAMVAAGTG 214 Query: 90 STRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFNDTQLFHIINSIHQY------ 136 A S ++ + +D +DLL +D Q F N + Sbjct: 215 VRVRYVHADQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKNRTQEEFFYAFE 274 Query: 137 -----DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 +++T+ T+P L SR + V I P+ + ++++ + Sbjct: 275 AMVAQRKQIIITSDTYPKELSGIDSRLISRFDSGLTVAIEPPELEMRVAILLRKAESEGV 334 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI-TRSLAAEVLKET 242 + +++A +I + + ++ E + K+ A G + T + E LK+ Sbjct: 335 PMPEEVAFFIAKHLRSNVRELEGALRKVLAYARFHGRDVLTVDVCKEALKDL 386 >gi|222100623|ref|YP_002535191.1| Chromosomal replication initiator protein dnaA [Thermotoga neapolitana DSM 4359] gi|221573013|gb|ACM23825.1| Chromosomal replication initiator protein dnaA [Thermotoga neapolitana DSM 4359] Length = 450 Score = 96.4 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 38/240 (15%), Positives = 88/240 (36%), Gaps = 26/240 (10%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--VILVGPSGSGKSCLAN-------- 82 P + ++ +V A P + + + G G GK+ L Sbjct: 107 PLNPAYTFENFVVGPGNSFAYHASLEVAKNPGKYNPLFIYGGVGLGKTHLLQSIGNYIVQ 166 Query: 83 ---------IWSDKSRSTRFSNIAKSLDSILIDTRK----PVLLEDIDLL---DFNDTQL 126 I S+K + ++ + + + + +L++DI L T+L Sbjct: 167 REPDLRVMYITSEKFLNDLVDSMKEGKLAEFREKYRKKVDVLLIDDIQFLIGKTGVQTEL 226 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH N +H +++ + P L SR + V K+ PD + + + KM Sbjct: 227 FHTFNELHDSGKQIVICSDREPHMLKEFQDRLISRFQMGLVAKLEPPDRETRKSIARKML 286 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + + +++ ++ + ++ +L + + K+ + G + A +LK+ + + Sbjct: 287 EVEEGELPEEVLDFVAENVDDNLRRLKGAIIKLLVYKETTGREVDLKEAIALLKDFIKPE 346 >gi|121596425|ref|YP_988321.1| chromosomal replication initiation protein [Acidovorax sp. JS42] gi|120608505|gb|ABM44245.1| chromosomal replication initiator protein DnaA [Acidovorax sp. JS42] Length = 473 Score = 96.4 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 37/240 (15%), Positives = 88/240 (36%), Gaps = 26/240 (10%) Query: 29 FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI-- 83 F ++ + L+ +A A P + + + G G GK+ L + Sbjct: 133 AFRTRLNPALTFETLVEGTANRMARSAAMHVAGSPGHLYNPLFIYGGVGLGKTHLVHAVG 192 Query: 84 ---WSDKSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND---------- 123 D+ + A+ S ++ + + +D +DLL +D Sbjct: 193 NKLLQDRPDAKVLYIHAEQFVSDVVKSYQRRTFDDFKERYHSLDLLLIDDVQFFANKDRT 252 Query: 124 -TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 + F+ ++ S ++MT+ T+P L SR + V I P+ + ++ Sbjct: 253 QEEFFNAFEALLAKKSHIVMTSDTYPKGLANIHERLVSRFDSGLTVAIEPPELEMRVAIL 312 Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + +++A ++ + + ++ E + K+ + ++ LA E L++ Sbjct: 313 INKARAEGSEMPEEVAFFVAKNVRSNVRELEGALRKILAYSRFNQKEVSIQLAREALRDL 372 >gi|227496605|ref|ZP_03926883.1| chromosomal replication initiator protein DnaA [Actinomyces urogenitalis DSM 15434] gi|226833885|gb|EEH66268.1| chromosomal replication initiator protein DnaA [Actinomyces urogenitalis DSM 15434] Length = 525 Score = 96.4 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 82/234 (35%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91 + + + A + PSR + + G SG GK+ L + +R Sbjct: 183 NPRYTFATYVQGKSNRLARTAAAAVAEAPSRAYNPLFIYGGSGLGKTHLLHAIGHYARKL 242 Query: 92 R-----------------FSNIAKSLDSILIDTRKPV---LLEDIDLLDFNDTQL---FH 128 +++A D + V L++D+ + + L FH Sbjct: 243 YPGITVKYVNSEEFVSDFIASVADGQMRNFKDRYRNVDILLVDDVQFFEGKEQTLEEFFH 302 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++ + +++T+ + L SR + V + PD + + ++ Sbjct: 303 TFNALRIAEKQIVLTSDQPALELKGFNNRLISRFQEGLVADVQPPDLETRQAILTLKARA 362 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 I + + + YI R+ ++ E + ++ A I R+LA LK+ Sbjct: 363 DGISVTEDVLEYIASRVTTNIRELEGALVRVTAFASLNKQPIDRTLAEVALKDV 416 >gi|189218018|ref|YP_001938660.1| Chromosomal replication initiator protein dnaA, ATPase [Methylacidiphilum infernorum V4] gi|254777907|sp|B3DWG6|DNAA_METI4 RecName: Full=Chromosomal replication initiator protein DnaA gi|189184876|gb|ACD82061.1| Chromosomal replication initiator protein dnaA, ATPase [Methylacidiphilum infernorum V4] Length = 454 Score = 96.4 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 43/256 (16%), Positives = 93/256 (36%), Gaps = 27/256 (10%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILV 70 K+ P+ + +F S S ++ +V E A + P++ + L Sbjct: 95 GKKIKSLPREDKSSIFESKGLNTKFSFENFVVGPNSEFAAAAAKAVAESPAKAYNPLFLY 154 Query: 71 GPSGSGKSCLANI----------W-------SDKSRSTRFSNIAKSLDSILIDTRK---P 110 G G GK+ L W S++ + I K + Sbjct: 155 GKVGLGKTHLMQAIGNHIVEKNKWILVQYVTSEQFTNEFIEAIQKGSIGQFRKKYRQIDV 214 Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 +L++DI L + + FH N + ++++ P S L SR + Sbjct: 215 LLIDDIQFLAGKERSQEEFFHTFNCLFDGSKQIVLSGDEAPSSLQNLEKRLISRFEWGLT 274 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNLALSR 226 +I P + ++ + + ID+K+ +I +R++ ++ E ++++ ++ + Sbjct: 275 AEILPPGIEVRLAILKHKLKNYSLSIDEKILEFIAERIKTNVRQLEGALNRLCAYASIHK 334 Query: 227 GMGITRSLAAEVLKET 242 IT +LK+ Sbjct: 335 EGKITLEETQSLLKDL 350 >gi|33866070|ref|NP_897629.1| chromosomal replication initiation protein [Synechococcus sp. WH 8102] gi|61212711|sp|Q7U605|DNAA_SYNPX RecName: Full=Chromosomal replication initiator protein DnaA gi|33639045|emb|CAE08051.1| chromosomal replication initiator protein DnaA [Synechococcus sp. WH 8102] Length = 465 Score = 96.4 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 40/255 (15%), Positives = 83/255 (32%), Gaps = 28/255 (10%) Query: 16 QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGP 72 + P ++ R +V A + P R + + G Sbjct: 110 ARESAPSRSPRRVLPGLNPRYVFGR--FVVGPNSRMAHAAALAVAEAPGREFNPLFICGG 167 Query: 73 SGSGKSCLANIWSD-----KSRSTRFSNIAKSLDSILID---------------TRKPVL 112 G GK+ L + ++ + LID +L Sbjct: 168 VGLGKTHLMQAIGHYRLEIDPSARVSYVSTETFTNDLIDSIRKDGMKAFRDRYRAADLLL 227 Query: 113 LEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 ++DI ++ + + FH N++H+ +++ + P L SR + + Sbjct: 228 VDDIQFIEGKEYTQEEFFHTFNALHEAGKQVVIASDRPPSQISRLQQRLISRFQMGLIAD 287 Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229 I PD + ++ K ++ + + L Y+ R ++ E + + A G+ Sbjct: 288 IQAPDLETRMAILQKKAEQERMALPRDLIHYLAGRFTSNIRELEGALTRAVAFASITGLP 347 Query: 230 ITRSLAAEVLKETQQ 244 +T A +L T Q Sbjct: 348 MTVESVAPMLDPTGQ 362 >gi|262371173|ref|ZP_06064494.1| chromosomal replication initiator protein dnaA [Acinetobacter johnsonii SH046] gi|262313903|gb|EEY94949.1| chromosomal replication initiator protein dnaA [Acinetobacter johnsonii SH046] Length = 459 Score = 96.4 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 44/256 (17%), Positives = 96/256 (37%), Gaps = 33/256 (12%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDS--WPSWPSRV--VIL 69 +K++ + +++ QL S + + + A S+ + L Sbjct: 109 EKEEGNSKNSRKRQL------NPLFSFSLFVEGRSNQMAAETCRKVLTQLGASQHNPLFL 162 Query: 70 VGPSGSGKSCLANI-----WSDKSRSTRFSNIAKSLDSILIDTR---------------K 109 GP+G GK+ L K + A+S + + Sbjct: 163 YGPTGLGKTHLMQAVGNALLQAKPNARVMYMTAESFVQDFVSSLQQGKVEEFKKNCRSLD 222 Query: 110 PVLLEDIDLLDFNDTQL---FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 +L++DI LL + L F+ N++ +++T+ +P P L SR Sbjct: 223 LLLVDDIHLLAGKEASLVEFFYTFNALLDESKQIILTSDRYPKELTELDPRLVSRFSWGL 282 Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 V + PD + ++++K + + + A +I Q++ ++ E ++K+ ++ + Sbjct: 283 SVGVEPPDIETRIEILLKKAESNDVELPRNCALFIAQQVVANVRELEGALNKVVAISRFK 342 Query: 227 GMGITRSLAAEVLKET 242 G I + E LK+ Sbjct: 343 GTAIDLDVVRESLKDV 358 >gi|160895451|ref|YP_001561033.1| chromosomal replication initiation protein [Delftia acidovorans SPH-1] gi|160361035|gb|ABX32648.1| chromosomal replication initiator protein DnaA [Delftia acidovorans SPH-1] Length = 468 Score = 96.4 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 36/240 (15%), Positives = 86/240 (35%), Gaps = 26/240 (10%) Query: 29 FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI-- 83 F ++ + L+ +A A P + + + G G GK+ L + Sbjct: 128 VFRTRLNAALTFETLVEGTANRMARSAAMHVAGSPGHLYNPLFIYGGVGLGKTHLVHAVG 187 Query: 84 ---WSDKSRSTRFSNIAKSLDSILIDTR---------------KPVLLEDIDLLDFND-- 123 +DK + A+ S ++ +L++D+ D Sbjct: 188 NKLLADKPDAKVLYIHAEQFVSDVVKAYQRRTFDEFKERYHSLDLLLIDDVQFFANKDRT 247 Query: 124 -TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 + F+ ++ S ++MT+ T+P L SR + V I P+ + ++ Sbjct: 248 QEEFFNAFEALLAKKSHIVMTSDTYPKGLANIHERLVSRFDSGLTVAIEPPELEMRVAIL 307 Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + +++A ++ + + ++ E + K+ + ++ LA E L++ Sbjct: 308 INKARAENAEMPEEVAFFVAKNVRSNVRELEGALRKILAYSRFNQKEVSIQLAREALRDL 367 >gi|81251057|gb|ABB69864.1| DNA replication initiator protein [Nitrosospira sp. TCH711] Length = 476 Score = 96.4 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 83/234 (35%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGPSGSGKSCLANIW------S 85 + + + A + A + P + G G GK+ L Sbjct: 142 NPSFTFNTFVTGKANQLARAGAIQVAERPGVAYNPFFIYGGVGLGKTHLIQAIGNFVVEH 201 Query: 86 DKSRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128 + S R+ + + + ++ + +L++DI + F+ Sbjct: 202 NPSAKVRYIHSEQYVSDVVRAYQHKAFDEFKRYYHSLDLLLIDDIQFFGGKNRTQEEFFY 261 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++ + +++T ++P L SR V + P+ + +++K Sbjct: 262 AFNALIEAHKQVIITCDSYPKEIAGMEERLISRFGWGLTVAVEPPELEMRVAILLKKALM 321 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 I +D+ +A +I + + ++ E + ++ + G ++ LA E LK+ Sbjct: 322 EDIILDESVAFFIAKHIRSNVRELEGALKRVVAYSRFTGHALSLELAREALKDL 375 >gi|81251061|gb|ABB69867.1| DNA replication initiator protein [Nitrosospira sp. TCH716] Length = 476 Score = 96.4 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 83/234 (35%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGPSGSGKSCLANIW------S 85 + + + A + A + P + G G GK+ L Sbjct: 142 NPSFTFNTFVTGKANQLARAGAIQVAERPGVAYNPFFIYGGVGLGKTHLIQAIGNFVVEH 201 Query: 86 DKSRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128 + S R+ + + + ++ + +L++DI + F+ Sbjct: 202 NPSAKVRYIHSEQYVSDVVRAYQHKAFDEFKRYYHSLDLLLIDDIQFFGGKNRTQEEFFY 261 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++ + +++T ++P L SR V + P+ + +++K Sbjct: 262 AFNALIEAHKQVIITCDSYPKEIAGMEERLISRFGWGLTVAVEPPELEMRVAILLKKALM 321 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 I +D+ +A +I + + ++ E + ++ + G ++ LA E LK+ Sbjct: 322 EDIILDESVAFFIAKHIRSNVRELEGALKRVVAYSRFTGHALSLELAREALKDL 375 >gi|269303183|gb|ACZ33283.1| putative chromosomal replication initiator protein DnaA [Chlamydophila pneumoniae LPCoLN] Length = 460 Score = 96.4 bits (239), Expect = 4e-18, Method: Composition-based stats. Identities = 29/214 (13%), Positives = 72/214 (33%), Gaps = 28/214 (13%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPS-------RVVILVGPSGSGKSCLAN---- 82 ++ + LV + R++ + P + L GP GSGK+ L Sbjct: 104 VNPEMTFSNFLVTPENDLPFRVLQEFTKSPDENGGVTFNPIYLFGPEGSGKTHLMQSAIS 163 Query: 83 IWSDKSRSTRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDF---NDTQ 125 + + + + + ++ R + +EDI++ + Sbjct: 164 VLRESGGKILYVSSDLFTEHLVSAIRSGEMQKFRSFYRNIDALFIEDIEVFSGKSATQEE 223 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 FH NS+H +++++ P L SR + + I + L +++ Sbjct: 224 FFHTFNSLHSEGKLIVVSSSYAPADLVAVEDRLISRFEWGVAIPIHPLVQEGLRSFLMRQ 283 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 I I + +++ + ++ ++ + Sbjct: 284 VERLSIRIQETALDFLIYALSSNVKTLLHALNLL 317 >gi|271961610|ref|YP_003335806.1| DNA replication initiation ATPase-like protein [Streptosporangium roseum DSM 43021] gi|270504785|gb|ACZ83063.1| ATPase involved in DNA replication initiation- like protein [Streptosporangium roseum DSM 43021] Length = 582 Score = 96.4 bits (239), Expect = 4e-18, Method: Composition-based stats. Identities = 37/235 (15%), Positives = 85/235 (36%), Gaps = 28/235 (11%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW----SDK 87 + + ++ S+ A + P+ + + G SG GK+ L + Sbjct: 242 NPKYTFETFVIGSSNRFAHAAAVAVAEAPAKAYNPLFIYGDSGLGKTHLLHAIGHYAQSL 301 Query: 88 SRSTRF---------SNIAKSLDSILIDTRKP-------VLLEDIDLLDFND---TQLFH 128 R ++ S+ D + +L++DI L+ + + FH Sbjct: 302 YDGARVRYVSSEEFTNDFINSIRDHKADGFRSRYRAVDILLVDDIQFLEGKEQTQEEFFH 361 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 N++H + +++++ P V L D L +R + + + P+ + ++ K Sbjct: 362 TFNTLHNANKQIVISSDRAPKQL-VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAI 420 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + ++ YI R+ ++ E + ++ A + L VLK+ Sbjct: 421 QEGLAAPPEVLEYIASRISTNIRELEGALIRVTAFASLNRQSVDLQLTEVVLKDL 475 >gi|292490171|ref|YP_003525610.1| chromosomal replication initiator protein DnaA [Nitrosococcus halophilus Nc4] gi|291578766|gb|ADE13223.1| chromosomal replication initiator protein DnaA [Nitrosococcus halophilus Nc4] Length = 450 Score = 96.4 bits (239), Expect = 4e-18, Method: Composition-based stats. Identities = 29/232 (12%), Positives = 81/232 (34%), Gaps = 28/232 (12%) Query: 38 ISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI---------- 83 + ++ + + + ++ ++ P + + G G GK+ L + Sbjct: 119 YTFNNFVEGKSNQLPRAASYQVAEN-PGSAYNPLFIYGGVGLGKTHLMHAVGNYIRTRSP 177 Query: 84 -------WSDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFHII 130 S++ + + + + + V L++DI + + F+ Sbjct: 178 DARVAYLHSEQFVAEMIKALQLNAINEFKARYRSVDVLLIDDIQFFAGKERSQEEFFYTF 237 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N++ + +++T FP L SR V + P+ + +++ Sbjct: 238 NTLLEVQHQIILTCDRFPKEVNGLEERLKSRFGWGLTVAVEPPELETRVAILMNKANIES 297 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + +A ++ + + ++ E + ++ + IT L E LK+ Sbjct: 298 VALSDDVAFFLGRLIYSNVRELEGALRRVIAYSRFTRRPITMELTREALKDL 349 >gi|23335939|ref|ZP_00121170.1| COG0593: ATPase involved in DNA replication initiation [Bifidobacterium longum DJO10A] Length = 506 Score = 96.4 bits (239), Expect = 4e-18, Method: Composition-based stats. Identities = 35/222 (15%), Positives = 76/222 (34%), Gaps = 32/222 (14%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWS------DKS 88 + D + + A + + + + G SG GK+ L N D Sbjct: 161 FTFDSFVPGDSNRFARTVALAVAEGSGQDFNPLCIYGGSGLGKTHLLNAIGNYALVKDPG 220 Query: 89 RSTRFSNIAKSLDSILIDTRKP-------------------VLLEDIDLLDFNDTQL--- 126 R+ + + + + P +L++DI L + L Sbjct: 221 LKVRYVTSEEFTNEFIDALQNPNQSQGQIAEFNRRYRQVDVLLIDDIQFLGGKEATLDQF 280 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH N++HQ + +++ + P + L SR ++ V + PD + ++ + Sbjct: 281 FHTFNALHQANKRIVIASDVAPKNLKGFEARLISRFESGLTVDVKPPDLETRIAILRMIA 340 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN-LALSRG 227 + I + I +R ++ E + ++ +LS Sbjct: 341 SMNGSKIPSDVLDLIAERFTENIRELEGALTRVTAVASLSNQ 382 >gi|78184461|ref|YP_376896.1| chromosomal replication initiation protein [Synechococcus sp. CC9902] gi|123729943|sp|Q3AYH5|DNAA_SYNS9 RecName: Full=Chromosomal replication initiator protein DnaA gi|78168755|gb|ABB25852.1| chromosomal replication initiator protein DnaA [Synechococcus sp. CC9902] Length = 462 Score = 96.0 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 43/262 (16%), Positives = 86/262 (32%), Gaps = 32/262 (12%) Query: 12 VPDKQKNDQPKNKEEQ---LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-- 66 V + ++ P Q L + R +V A + P R Sbjct: 101 VSEPRRESAPARPSGQRRYLP-ALNPRYVFGR--FVVGQNSRMAHAAALAVAEAPGREFN 157 Query: 67 -VILVGPSGSGKSCLANIWSD-----KSRSTRFSNIAKSLDSILIDT------------- 107 + + G G GK+ L + ++ + LI Sbjct: 158 PLFICGGVGLGKTHLMQAIGHYRLEIDPGARVAYVSTETFTNDLIQAIRKDGMQAFRDRY 217 Query: 108 --RKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 +L++DI ++ + + FH N++H+ +++ + P L SR Sbjct: 218 RAADLILVDDIQFIEGKEYTQEEFFHTFNALHEAGRQVVIASDRPPSQIPRLQQRLISRF 277 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 + + I PD + ++ K ++ + + L YI R ++ E + + Sbjct: 278 QMGLIADIQSPDLETRMAILQKKAEQERMALPRDLIQYIAGRFTSNIRELEGALTRAVAF 337 Query: 223 ALSRGMGITRSLAAEVLKETQQ 244 A G+ +T A +L T Q Sbjct: 338 ASITGLPMTVESVAPMLDPTGQ 359 >gi|288817322|ref|YP_003431669.1| chromosomal replication initiation protein [Hydrogenobacter thermophilus TK-6] gi|288786721|dbj|BAI68468.1| chromosomal replication initiation protein [Hydrogenobacter thermophilus TK-6] gi|308750929|gb|ADO44412.1| chromosomal replication initiator protein DnaA [Hydrogenobacter thermophilus TK-6] Length = 399 Score = 96.0 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 88/227 (38%), Gaps = 27/227 (11%) Query: 17 KNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPS 73 ++ + K E + S D+ +V A E ++ +P + + G Sbjct: 64 RSAGEREKNEAYPSNLI--EKYSFDNFVVGKANELVYKVCIEVAEYPGSSFNPLFIYGKV 121 Query: 74 GSGKSCLANIWSDKSR----STRFSNIAKSLDSILI--------------DTRKPVLLED 115 G GK+ L + +++R +S I D ++ + +LL+D Sbjct: 122 GLGKTHLLHAIGNRARDGGYKVIYSPITDFSDEMIAYLKKGQIEAFRNKYSSVDVLLLDD 181 Query: 116 IDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 + L + +LF + SI+ D +++ + P L SR ++ V++I L Sbjct: 182 VQFLSGKERTQIELFRVFESIYSKDKQMVLVSDRHPKDLKDISDRLISRFESGLVIEIGL 241 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 DD+ +I + + +D+K+ +I + ++ E + + Sbjct: 242 -DDETKLSIIKQKLILYGMPLDQKVIDHIFENTGYNVREIEGAIKTL 287 >gi|257455164|ref|ZP_05620402.1| chromosomal replication initiator protein DnaA [Enhydrobacter aerosaccus SK60] gi|257447497|gb|EEV22502.1| chromosomal replication initiator protein DnaA [Enhydrobacter aerosaccus SK60] Length = 446 Score = 96.0 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 36/243 (14%), Positives = 90/243 (37%), Gaps = 26/243 (10%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW----PSRVVILVGPSGSGKSCL 80 E+Q F + + D + + + A + + + + + G +G GK+ L Sbjct: 104 EQQRSFQY-IDPHFTFDQFVTAKSNQIAYSICRETANNLGQSKNNPLFIYGATGLGKTHL 162 Query: 81 ANIWSDK-----------SRSTRFSNIAKSLDSILIDT-------RKPVLLEDIDLLDFN 122 + + + + + SL + ID ++++DI ++ Sbjct: 163 MQAIAHEILKQGKSFYYFTSDKFVNQLVHSLRTQKIDEFKDKIKKADLLIIDDIHVIAGK 222 Query: 123 D---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179 Q ++N + +++ + P + L SRL V + P+ + Sbjct: 223 QKSSEQFLLLLNDFMSKNKQVILASDKHPSALTDFDERLKSRLAWGVAVALEPPELETRI 282 Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 +++ K +++ + K+ A +I Q + ++ E ++K+ ++ I L L Sbjct: 283 QILQKKSKAQEVILPKECAIFIAQHIIANVRELEGALNKVLAISRLLNQPIHLELVQMAL 342 Query: 240 KET 242 K+ Sbjct: 343 KDL 345 >gi|81251053|gb|ABB69861.1| DNA replication initiator protein [Nitrosospira sp. KAN8] Length = 476 Score = 96.0 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 33/234 (14%), Positives = 83/234 (35%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGPSGSGKSCLANIW------S 85 + + + A + A + P + G G GK+ L Sbjct: 142 NPSFTFNTFVTGKANQLARAGAIQVAERPGVAYNPFFIYGGVGLGKTHLIQAIGNFVVEH 201 Query: 86 DKSRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128 + + R+ + + + ++ + +L++DI + F+ Sbjct: 202 NPAAKVRYIHSEQYVSDVVGAYQHKAFDEFKRYYHSLDLLLIDDIQFFGGKNRTQEEFFY 261 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++ + +++T ++P L SR V + P+ + +++K Sbjct: 262 AFNALIEAHKQVIITCDSYPKEIAGMEERLISRFGWGLTVAVEPPELEMRVAILLKKALM 321 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 I +D+ +A +I + + ++ E + ++ + G ++ LA E LK+ Sbjct: 322 EDIILDESVAFFIAKHIRSNVRELEGALKRVVAYSRFTGHALSLDLAREALKDL 375 >gi|224437107|ref|ZP_03658088.1| chromosomal replication initiation protein [Helicobacter cinaedi CCUG 18818] gi|313143577|ref|ZP_07805770.1| chromosomal replication initiator protein dnaA [Helicobacter cinaedi CCUG 18818] gi|313128608|gb|EFR46225.1| chromosomal replication initiator protein dnaA [Helicobacter cinaedi CCUG 18818] Length = 443 Score = 96.0 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 39/238 (16%), Positives = 91/238 (38%), Gaps = 26/238 (10%) Query: 32 FPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS 88 + ++ +V + E A + + + V+ G SG GK+ L + + Sbjct: 103 LSLNPFYTFENFVVGKSNEHAHTIAKVVARQQALAYNPVLFYGKSGLGKTHLLHAIGNVV 162 Query: 89 RSTRFSNIAKSLDSILIDTRK------------------PVLLEDIDLLDFND---TQLF 127 + + + + + +L D +L++D+ L + +L Sbjct: 163 KEQNKNVLYTTAEELLNDFISKIRRGTMDSFREKYRKCDYLLIDDVQFLGNREGVQEELL 222 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 + N+++ ++MT+ P L SR + + +I+ P+ + +I Sbjct: 223 NTFNALYSTQKQIVMTSDKPPKEIKGLEDRLRSRFEGGVMAEITNPELETKISIIELKCQ 282 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD-NLALSRGMGITRSLAAEVLKETQQ 244 +I DK++ YI + ++ E ++ ++ +++LS +A VLK Q Sbjct: 283 INRINFDKEVIDYIASNIYGNIRQIEGILSTINTHMSLSPEANA-LKVAKNVLKNYQN 339 >gi|332654819|ref|ZP_08420561.1| ATPase involved in DNA replication initiation [Ruminococcaceae bacterium D16] gi|332516162|gb|EGJ45770.1| ATPase involved in DNA replication initiation [Ruminococcaceae bacterium D16] Length = 427 Score = 96.0 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 40/244 (16%), Positives = 90/244 (36%), Gaps = 29/244 (11%) Query: 3 LMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW 62 L + V + + DQ + ++ F FP + + +V S+ + A + Sbjct: 58 LFSAEMDVVVLTEGELDQYQQPAQKNDF-FPGTEEYTFERFVVGSSNKFAHAAARAVADN 116 Query: 63 PSRV---VILVGPSGSGKSCLANIWS-----------------DKSRSTRFSNIAKSLDS 102 P + + + G SG GK+ L + D + I + ++ Sbjct: 117 PGQSYNPLFIYGESGLGKTHLLYAIAHTIHKNHPEYKVVYIKGDTFTNELIQAIREGRNA 176 Query: 103 ILID---TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156 + L++D+ + D ++FH N++++ ++ T+ P + L Sbjct: 177 EFREKYRGADVFLMDDVQFIAGRDSTQEEMFHTFNTLYELKKQIVFTSDRPPKEM-LRLE 235 Query: 157 D-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215 D L +R + + I PD + +I + + + L I + + ++ E Sbjct: 236 DRLKTRFEWGLLADIQPPDYETRMAIIKNKAVRMGVELPEFLLQLIAENITANVRQIEGT 295 Query: 216 VDKM 219 V+K+ Sbjct: 296 VNKI 299 >gi|81251049|gb|ABB69858.1| DNA replication initiator protein [Nitrosospira sp. HBN8222A] Length = 476 Score = 96.0 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 83/234 (35%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGPSGSGKSCLANIW------S 85 + + + A + A + P + G G GK+ L Sbjct: 142 NPSFTFNTFVTGKANQLARAGAIQVAERPGVAYNPFFIYGGVGLGKTHLIQAIGNFVVEH 201 Query: 86 DKSRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFH 128 + S R+ + + + ++ + +L++DI + F+ Sbjct: 202 NPSAKVRYIHSEQYVSDVVRAYQHKAFDEFKRYYHSLDLLLIDDIQFFGGKNRTQEEFFY 261 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++ + +++T ++P L SR V + P+ + +++K Sbjct: 262 AFNALIEAHKQVIITCDSYPKEIAGMEERLISRFGWGLTVAVEPPELEMRVAILLKKALM 321 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 I +D+ +A +I + + ++ E + ++ + G ++ LA E LK+ Sbjct: 322 EDIILDESVAFFIAKHIRSNVRELEGALKRVVAYSRFTGHALSLELAREALKDL 375 >gi|119964126|ref|YP_945834.1| chromosomal replication initiator protein DnaA [Arthrobacter aurescens TC1] gi|119950985|gb|ABM09896.1| chromosomal replication initiator protein DnaA [Arthrobacter aurescens TC1] Length = 472 Score = 96.0 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 82/234 (35%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90 D ++ S+ A + P+ + + G SG GK+ L + +R Sbjct: 132 NPKYIFDTFVIGSSNRFAHAAAVAVAEAPAKAYNPLFIYGDSGLGKTHLLHAIGHYARRL 191 Query: 91 -----TRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDFND---TQLFH 128 R+ N + + + R +L++DI L D + FH Sbjct: 192 YSGIRVRYVNSEEFTNDFINSIRDDEGTSFKTTYRNVDVLLIDDIQFLAGKDRTQEEFFH 251 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H + +++T+ P + SR + + I P+ + ++ K Sbjct: 252 TFNALHNANKQVVITSDQPPKMLAGFEDRMTSRFEWGLLTDIQPPELETRIAILRKKGLS 311 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + YI ++ ++ E + ++ A + +LA VLK+ Sbjct: 312 EGLSAPDDALEYIASKISSNIRELEGALIRVTAFASLNRQPVDVALAEMVLKDL 365 >gi|189184480|ref|YP_001938265.1| chromosomal replication initiation protein [Orientia tsutsugamushi str. Ikeda] gi|189181251|dbj|BAG41031.1| chromosomal replication initiator protein DnaA [Orientia tsutsugamushi str. Ikeda] Length = 470 Score = 96.0 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 35/240 (14%), Positives = 83/240 (34%), Gaps = 28/240 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWP-----SRVVILVGPSGSGKSCLANI--WSDK 87 + D+ +V E A + P S + L G G GK+ L + W + Sbjct: 134 DPRFTFDNFVVGRPNELAYAAATTVAESPTAVAKSNPLFLYGGVGLGKTHLMHAIAWHIQ 193 Query: 88 SRSTRFSNIAKSLDSIL------------------IDTRKPVLLEDIDLLDFND---TQL 126 + S++ I S + + + ++++DI + D + Sbjct: 194 NSSSKRKVIYMSAEKFMYQFVQSLRNKDVMSFKEQFRSVDVLMIDDIQFICGKDSTQEEF 253 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH N++ ++++ P + SRL V + + ++ Sbjct: 254 FHTFNALIDNKRQMVISCDRSPSDLDNIEERIKSRLGWGLVADVHSTTYELRLGILQSKV 313 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + K+ ++ ++ ++ E ++K+ + G IT E+L++ + + Sbjct: 314 EQLATAVPLKVLEFLAAKITSNVRELEGALNKVIAHSTLVGYEITIENTQEILRDLLRSN 373 >gi|148283998|ref|YP_001248088.1| chromosomal replication initiation protein [Orientia tsutsugamushi str. Boryong] gi|146739437|emb|CAM79067.1| chromosomal replication initiator protein [Orientia tsutsugamushi str. Boryong] Length = 469 Score = 96.0 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 35/240 (14%), Positives = 83/240 (34%), Gaps = 28/240 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWP-----SRVVILVGPSGSGKSCLANI--WSDK 87 + D+ +V E A + P S + L G G GK+ L + W + Sbjct: 133 DPRFTFDNFVVGRPNELAYAAATTVAESPTAVAKSNPLFLYGGVGLGKTHLMHAIAWHIQ 192 Query: 88 SRSTRFSNIAKSLDSIL------------------IDTRKPVLLEDIDLLDFND---TQL 126 + S++ I S + + + ++++DI + D + Sbjct: 193 NSSSKRKVIYMSAEKFMYQFVQSLRNKDVMSFKEQFRSVDVLMIDDIQFICGKDSTQEEF 252 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH N++ ++++ P + SRL V + + ++ Sbjct: 253 FHTFNALIDNKRQMVISCDRSPSDLDNIEERIKSRLGWGLVADVHSTTYELRLGILQSKV 312 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + K+ ++ ++ ++ E ++K+ + G IT E+L++ + + Sbjct: 313 EQLATAVPLKVLEFLAAKITSNVRELEGALNKVIAHSTLVGYEITIENTQEILRDLLRSN 372 >gi|293602695|ref|ZP_06685136.1| DNA-directed DNA replication initiator protein [Achromobacter piechaudii ATCC 43553] gi|292818886|gb|EFF77926.1| DNA-directed DNA replication initiator protein [Achromobacter piechaudii ATCC 43553] Length = 485 Score = 96.0 bits (238), Expect = 5e-18, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 83/232 (35%), Gaps = 27/232 (11%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIW-----SDKSR 89 ++ ++ + A + A P + L G G GK+ L + + + Sbjct: 153 LTFENFVTGKANQLARAAALQVAENPGTSYNPLFLYGGVGLGKTHLIHAIGNAMVAAGTG 212 Query: 90 STRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFNDTQLFHIINSIHQY------ 136 A S ++ + +D +DLL +D Q F N + Sbjct: 213 VRVRYVHADQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKNRTQEEFFYAFE 272 Query: 137 -----DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 +++T+ T+P L SR + V I P+ + ++++ + Sbjct: 273 AMVAQRKQIIITSDTYPKELSGIDSRLISRFDSGLTVAIEPPELEMRVAILLRKAESEGV 332 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI-TRSLAAEVLKET 242 + +++A +I + + ++ E + K+ A G + T + E LK+ Sbjct: 333 PMPEEVAFFIAKHLRSNVRELEGALRKVLAYARFHGRDVLTVDVCKEALKDL 384 >gi|326802615|ref|YP_004320433.1| chromosomal replication initiator protein DnaA [Aerococcus urinae ACS-120-V-Col10a] gi|326650687|gb|AEA00870.1| chromosomal replication initiator protein DnaA [Aerococcus urinae ACS-120-V-Col10a] Length = 450 Score = 96.0 bits (238), Expect = 5e-18, Method: Composition-based stats. Identities = 35/239 (14%), Positives = 83/239 (34%), Gaps = 28/239 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSR---VVILVGPSGSGKSCLANIWSDKS--- 88 + ++ +V + A + P R + G G GK+ L + Sbjct: 115 NPKYTFENFVVGEGNKMAHAAALAVAEGPGRDYNPLFFYGGVGLGKTHLMQAIGHEVLRT 174 Query: 89 --RSTRFSNIAKSLDSILIDTRKP---------------VLLEDIDLLD---FNDTQLFH 128 + +++ + I+ + +L++DI + + FH Sbjct: 175 HPDAIVKYVTSETFTNDFIEAIRTNTMPDFHQAYRHVDMLLVDDIQFIGNKQSTQEEFFH 234 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 N+++ + +++T+ L D L SR K I+ PD + ++ Sbjct: 235 TFNALYNNNKHIVLTSDRDASQIP-ELEDRLVSRFKQGLSTDITPPDLETRIAILRNKAK 293 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 I I + +YI +++ ++ E + + A+ ++ +AA L + + Sbjct: 294 VNGIDIPDETLSYIAGQIDTNIRELEGALTSVQAYAVMNQEELSPDVAARALSNYRDAN 352 >gi|148241930|ref|YP_001227087.1| chromosomal replication initiation protein [Synechococcus sp. RCC307] gi|147850240|emb|CAK27734.1| Chromosomal replication initiator protein dnaA [Synechococcus sp. RCC307] Length = 461 Score = 95.6 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 41/231 (17%), Positives = 76/231 (32%), Gaps = 26/231 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD----- 86 + +V A + P R + L G G GK+ L Sbjct: 124 NPRYTFQRFVVGPNSRMAHAAALAVAESPGREFNPLFLCGGVGLGKTHLMQAIGHYRLEI 183 Query: 87 --KSRSTRFSNIAKSLDSILI-------------DTRKPVLLEDIDLLDFND---TQLFH 128 SR S + D IL ++++DI ++ + + FH Sbjct: 184 DPDSRVFYVSTETFTNDLILAIRKDGMQAFRDRYRAADLIMVDDIQFIEGKEYTQEEFFH 243 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H+ +++ + P L SR + I PD + ++ K Sbjct: 244 TFNALHEAGRQIVIASDRPPSQIQRLQERLISRFSMGLIADIQAPDLETRMAILHKKAEQ 303 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 Q+ + + L YI R ++ E + + A G+ +T A +L Sbjct: 304 EQMRLPRDLIQYIAGRFTSNIRELEGALTRAVAFASITGLPMTVDAVAPLL 354 >gi|331001504|ref|ZP_08325122.1| replication initiator protein DnaA [Parasutterella excrementihominis YIT 11859] gi|329568233|gb|EGG50050.1| replication initiator protein DnaA [Parasutterella excrementihominis YIT 11859] Length = 457 Score = 95.6 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 84/235 (35%), Gaps = 31/235 (13%) Query: 37 GISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK------ 87 G++ D ++ +A A L+ +P + + G G GK+ L + K Sbjct: 120 GLTFDTFVIGNANRVARSSAMLVAEFPGERCNPLFIYGGVGLGKTHLMHAVGRKILEDNP 179 Query: 88 -------------------SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD---FNDTQ 125 S R+S+ +L++D+ L + Sbjct: 180 NTNLLCISANRFINEVVSLSAGGRYSDEKIQKFDNKYRNLDALLIDDVQFLCKRGGTQQR 239 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 LF+I ++ + +++T T+ L SR A V I + + ++++ Sbjct: 240 LFNIFEALLPKNKQIILTCDTYARQLSDFDERLISRFGAGLSVSIEPAEFELRAAILLQK 299 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + + ++A I R+ ++ E ++ + A IT LA E L+ Sbjct: 300 AKQQGVKLPLEVAYLIATRLNTNIRELEGALNSVIMRAEVFKKPITEELAKEALQ 354 >gi|303256370|ref|ZP_07342384.1| DNA replication initiator protein [Burkholderiales bacterium 1_1_47] gi|302859861|gb|EFL82938.1| DNA replication initiator protein [Burkholderiales bacterium 1_1_47] Length = 457 Score = 95.6 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 84/235 (35%), Gaps = 31/235 (13%) Query: 37 GISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK------ 87 G++ D ++ +A A L+ +P + + G G GK+ L + K Sbjct: 120 GLTFDTFVIGNANRVARSSAMLVAEFPGERCNPLFIYGGVGLGKTHLMHAVGRKILEDNP 179 Query: 88 -------------------SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD---FNDTQ 125 S R+S+ +L++D+ L + Sbjct: 180 NTNLLCISANRFINEVVSLSAGGRYSDEKIQKFDNKYRNLDALLIDDVQFLCKRGGTQQR 239 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 LF+I ++ + +++T T+ L SR A V I + + ++++ Sbjct: 240 LFNIFEALLPKNKQIILTCDTYARQLSDFDERLISRFGAGLSVSIEPAEFELRAAILLQK 299 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + + ++A I R+ ++ E ++ + A IT LA E L+ Sbjct: 300 AKQQGVKLPLEVAYLIATRLNTNIRELEGALNSVIMRAEVFKKPITEELAKEALQ 354 >gi|331693900|ref|YP_004330139.1| Chromosomal replication initiator protein dnaA [Pseudonocardia dioxanivorans CB1190] gi|326948589|gb|AEA22286.1| Chromosomal replication initiator protein dnaA [Pseudonocardia dioxanivorans CB1190] Length = 555 Score = 95.6 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 30/234 (12%), Positives = 80/234 (34%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWP---SRVVILVGPSGSGKSCLANIWSDKSRST 91 + D ++ ++ + + P + + G SG GK+ L + ++ Sbjct: 216 NEKYTFDTFVIGASNRFSHAAAVAVAEAPARAYNPLFIWGESGLGKTHLLHAVGHYAQRL 275 Query: 92 --RFSNIAKSLDSILIDTRKPVLLED---------------------IDLLDFNDTQLFH 128 S + D + + ++ + + FH Sbjct: 276 FPGMRVRYVSTEEFTNDFINSLRDDRKVAFQRRYRDVDVLLVDDVQFLEGKEGTQEEFFH 335 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H + +++++ P + +R + + I P+ + ++ K A Sbjct: 336 TFNTLHNSNKQIVVSSDRPPKRLETLEDRMRTRFEWGLITDIQPPELETRIAILRKKAAQ 395 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ + + +I R+ER++ E + ++ A + LA VL++ Sbjct: 396 DRLAVPGDVLEFIAARIERNIRELEGALIRVTAFASLNRQPVDTQLAEIVLRDL 449 >gi|124265194|ref|YP_001019198.1| chromosomal replication initiation protein [Methylibium petroleiphilum PM1] gi|167016902|sp|A2SBM4|DNAA_METPP RecName: Full=Chromosomal replication initiator protein DnaA gi|124257969|gb|ABM92963.1| chromosomal replication initiator protein [Methylibium petroleiphilum PM1] Length = 467 Score = 95.6 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 83/234 (35%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANI-----WSD 86 ++ D L+ A + A P + + G G GK+ L + D Sbjct: 133 NTALTFDTLVPGRANQMARTAALHVAGAPGVMYNPLFIYGGVGLGKTHLIHAVGNALLRD 192 Query: 87 KSRSTRFSNIAKSLDSILIDTR---------------KPVLLEDIDLLDFND---TQLFH 128 K + A+ + ++ +L++D+ + + F+ Sbjct: 193 KPDARILYLHAEQFITDVVKNYQRKTFDELKAKYHSLDLLLIDDVQFFAGKERTQEEFFN 252 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + ++MT+ T+P L SR A V I P+ + +++K Sbjct: 253 AFEALLAKRAHIIMTSDTYPKGLADIDERLTSRFDAGLTVAIEPPELEMRVAILMKKSDV 312 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + +A ++ + + ++ E + K+ A I +LA E LK+ Sbjct: 313 EGTPMPEDVAFFVAKNVRANVRELEGALRKVLAYARFSQKDINIALAREALKDL 366 >gi|50083298|ref|YP_044808.1| chromosomal replication initiation protein [Acinetobacter sp. ADP1] gi|61212579|sp|Q6FG21|DNAA_ACIAD RecName: Full=Chromosomal replication initiator protein DnaA gi|49529274|emb|CAG66986.1| DNA replication initiator protein, transcriptional regulator of replication and housekeeping genes [Acinetobacter sp. ADP1] Length = 465 Score = 95.6 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 87/235 (37%), Gaps = 27/235 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDS--WPSWPSRV--VILVGPSGSGKSCLANI-----WS 85 + + + + A S+ + L GP+G GK+ L Sbjct: 130 NPLFTFSLFVEGRSNQMAAETCRKVLTQLGASQHNPLFLYGPTGLGKTHLMQAVGNALLQ 189 Query: 86 DKSRSTRFSNIAKSLDSILIDTR---------------KPVLLEDIDLLDFNDTQL---F 127 K + A+S + + +L++DI LL + L F Sbjct: 190 AKPNARVMYMTAESFVQDFVSSLQKGKVEEFKKNCRSLDLLLVDDIHLLAGKEASLVEFF 249 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 + N++ +++T+ +P P L SR V + PD + ++++K Sbjct: 250 YTFNALLDESKQIILTSDRYPKELTELDPRLVSRFSWGLSVGVEPPDIETRIEILLKKAE 309 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + + A +I Q++ ++ E ++K+ +A +G I + E LK+ Sbjct: 310 NSGVDLPRNCALFIAQQVVANVRELEGALNKVVAIARFKGSQIDLDVVRESLKDV 364 >gi|322390524|ref|ZP_08064042.1| DNA-directed DNA replication initiator protein [Streptococcus parasanguinis ATCC 903] gi|321142798|gb|EFX38258.1| DNA-directed DNA replication initiator protein [Streptococcus parasanguinis ATCC 903] Length = 452 Score = 95.6 bits (237), Expect = 6e-18, Method: Composition-based stats. Identities = 33/244 (13%), Positives = 84/244 (34%), Gaps = 30/244 (12%) Query: 30 FSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 + D+ + A+ + ++ + + + G G GK+ L N Sbjct: 110 IDTGLKSKYTFDNFVQGDGNIWAKAAALAVSENLAT-TYNPLFIYGGPGLGKTHLLNAIG 168 Query: 86 DK-----SRSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLLDF---- 121 ++ + A++ + ++ + +L++DI L Sbjct: 169 NQILENIPNARVKYVPAETFINEFLEHLRLGEMKTFKNTYRSLDLLLIDDIQSLGGKKVT 228 Query: 122 NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 + F+ N++H + +++T+ P L +R K I+ PD + + Sbjct: 229 TQEEFFNTFNALHSDNKQIVLTSDRSPDHLDSLEERLVTRFKWGLTQNITPPDFETRIAI 288 Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVLK 240 + D Y+ + + ++ E ++ + +A + IT +AAE ++ Sbjct: 289 LRNKIEDLDYIFPNDTLEYLAGQFDSNVRDLEGALNDISLMAKVKKLKEITIDVAAEAIR 348 Query: 241 ETQQ 244 + Sbjct: 349 ARKN 352 >gi|255320702|ref|ZP_05361879.1| chromosomal replication initiator protein DnaA [Acinetobacter radioresistens SK82] gi|262380667|ref|ZP_06073820.1| chromosomal replication initiator protein DnaA [Acinetobacter radioresistens SH164] gi|255302318|gb|EET81558.1| chromosomal replication initiator protein DnaA [Acinetobacter radioresistens SK82] gi|262297615|gb|EEY85531.1| chromosomal replication initiator protein DnaA [Acinetobacter radioresistens SH164] Length = 460 Score = 95.6 bits (237), Expect = 6e-18, Method: Composition-based stats. Identities = 45/257 (17%), Positives = 97/257 (37%), Gaps = 31/257 (12%) Query: 13 PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDS--WPSWPSRV--VI 68 P K+K +P + ++ + + + + + A S+ + Sbjct: 107 PKKEKEAEPAKQNKKRLLN----PLFTFALFVEGRSNQMAAETCRKVLTQLGASQHNPLF 162 Query: 69 LVGPSGSGKSCLANI-----WSDKSRSTRFSNIAKSLDSILIDTR--------------- 108 L GP+G GK+ L K + A+S + + Sbjct: 163 LYGPTGLGKTHLMQAVGNALLQAKPNARVMYMTAESFVQDFVSSLQRGKVEEFKKNCRSL 222 Query: 109 KPVLLEDIDLLDFNDTQL---FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 +L++DI LL + L F+ N++ +++T+ +P P L SR Sbjct: 223 DLLLVDDIHLLAGKEASLVEFFYTFNALLDESKQIILTSDRYPKELTELDPRLVSRFSWG 282 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 V + PD + ++++K +I + + A +I Q++ ++ E ++K+ ++ Sbjct: 283 LSVGVEPPDIETRIEILLKKAESNEIDLPRNCALFIAQQVVANVRELEGALNKVVAISRF 342 Query: 226 RGMGITRSLAAEVLKET 242 +G I + E LK+ Sbjct: 343 KGTAIDLDVVRESLKDV 359 >gi|152963973|ref|YP_001359757.1| chromosomal replication initiator protein DnaA [Kineococcus radiotolerans SRS30216] gi|189044597|sp|A6W3V4|DNAA_KINRD RecName: Full=Chromosomal replication initiator protein DnaA gi|151358490|gb|ABS01493.1| chromosomal replication initiator protein DnaA [Kineococcus radiotolerans SRS30216] Length = 518 Score = 95.6 bits (237), Expect = 6e-18, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 82/234 (35%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR-- 89 + ++ ++ A + P+ + + G SG GK+ L + ++ Sbjct: 179 NPKYIFETFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYAQNL 238 Query: 90 ----STRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLD---FNDTQLFH 128 R+ N + + + R +L++DI L + FH Sbjct: 239 YPGVQVRYVNSEEFTNDFINSIRDDKAQAFQRRHRDVDVLLIDDIQFLSNKVQTQEEFFH 298 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H +++T+ P + SR + + + PD + ++ K Sbjct: 299 TFNTLHNASKQVVITSDLPPKQLSGFEERMRSRFEWGLITDVQPPDLETRIAILRKKAIG 358 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ + + YI ++ ++ E + ++ A + LA VL++ Sbjct: 359 ERLEVPDDVNEYIASKISSNIRELEGALIRVTAFASLNRQPVDMQLAEIVLRDL 412 >gi|330822654|ref|YP_004385957.1| chromosomal replication initiator protein dnaA [Alicycliphilus denitrificans K601] gi|329308026|gb|AEB82441.1| Chromosomal replication initiator protein dnaA [Alicycliphilus denitrificans K601] Length = 473 Score = 95.6 bits (237), Expect = 6e-18, Method: Composition-based stats. Identities = 37/239 (15%), Positives = 89/239 (37%), Gaps = 26/239 (10%) Query: 30 FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI--- 83 F ++ + L+ +A A P + + + G G GK+ L + Sbjct: 134 FRTRLNPALTFETLVEGTANRMARSAAMHVAGSPGHLYNPLFIYGGVGLGKTHLVHAVGN 193 Query: 84 --WSDKSRSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND----------- 123 +D+ + A+ S ++ + + +D +DLL +D Sbjct: 194 KLLADRPDAKVLYIHAEQFVSDVVKSYQRRTFDDFKERYHSLDLLLIDDVQFFANKDRTQ 253 Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 + F+ ++ S ++MT+ T+P L SR + V I P+ + +++ Sbjct: 254 EEFFNAFEALLAKKSHIVMTSDTYPKGLANIHERLVSRFDSGLTVAIEPPELEMRVAILI 313 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + +++A ++ + + ++ E + K+ + ++ LA E L++ Sbjct: 314 NKARAEHAEMPEEVAFFVAKNVRSNVRELEGALRKILAYSRFNQKEVSIQLAREALRDL 372 >gi|262374719|ref|ZP_06067991.1| chromosomal replication initiator protein DnaA [Acinetobacter junii SH205] gi|262310375|gb|EEY91467.1| chromosomal replication initiator protein DnaA [Acinetobacter junii SH205] Length = 464 Score = 95.6 bits (237), Expect = 6e-18, Method: Composition-based stats. Identities = 42/249 (16%), Positives = 91/249 (36%), Gaps = 39/249 (15%) Query: 24 KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLID-------SWPSWPSRVVILVGPSGSG 76 K+ QL + + + + A + P + L GP+G G Sbjct: 124 KKRQL------NPLFTFSLFVEGRSNQMAAETCRKVLTQLGASQHNP---LFLYGPTGLG 174 Query: 77 KSCLANI-----WSDKSRSTRFSNIAKSLDSILIDTR---------------KPVLLEDI 116 K+ L K + ++S + + +L++DI Sbjct: 175 KTHLMQAVGNALLQAKPNARVMYMTSESFVQDFVSSLQKGKVEEFKKNCRSLDLLLVDDI 234 Query: 117 DLLDFNDTQL---FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 LL + L F+ N++ +++T+ +P P L SR V + P Sbjct: 235 HLLAGKEASLVEFFYTFNALLDESKQIILTSDRYPKELTELDPRLVSRFSWGLSVGVEPP 294 Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233 D + ++++K + + + + A +I Q++ ++ E ++K+ ++ +G I Sbjct: 295 DIETRIEILLKKAENSGVDLPRNCALFIAQQVVANVRELEGALNKVVAISRFKGTSIDLD 354 Query: 234 LAAEVLKET 242 + E LK+ Sbjct: 355 VVRESLKDV 363 >gi|195952381|ref|YP_002120671.1| chromosomal replication initiator protein DnaA [Hydrogenobaculum sp. Y04AAS1] gi|195931993|gb|ACG56693.1| chromosomal replication initiator protein DnaA [Hydrogenobaculum sp. Y04AAS1] Length = 444 Score = 95.6 bits (237), Expect = 6e-18, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 87/229 (37%), Gaps = 25/229 (10%) Query: 12 VPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVI 68 P+ + P + + + F + D+ +V E A R + + + + Sbjct: 90 YPNAETKLNPSDVKNKTAFKEGISSKYTFDNFIVGKQNEVAYRASLEVATDENSIYNPLF 149 Query: 69 LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID------------------TRKP 110 + G GSGK+ L +++ S S I S++ + Sbjct: 150 IYGKVGSGKTHLLQAIGNRAYSLGKSVIYTSMNDFTEEMVYYLKAGNIISFREKYKGVDI 209 Query: 111 VLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 +L++DI L + +LF+I N + QY+ ++ + P L SR + + Sbjct: 210 LLIDDIQFLSGKERTQMELFNIFNYLFQYNKHIVFASDKHPRDIKDISERLVSRFEGGLL 269 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216 V+ S+ DD +I + + +D++L +YI + E LV Sbjct: 270 VETSI-DDQIKLSIIKQKIQIYGLNVDERLISYIKDNTTNNAREIEGLV 317 >gi|167643974|ref|YP_001681637.1| chromosomal replication initiation protein [Caulobacter sp. K31] gi|189044631|sp|B0T135|DNAA_CAUSK RecName: Full=Chromosomal replication initiator protein DnaA gi|167346404|gb|ABZ69139.1| chromosomal replication initiator protein DnaA [Caulobacter sp. K31] Length = 487 Score = 95.6 bits (237), Expect = 6e-18, Method: Composition-based stats. Identities = 39/261 (14%), Positives = 84/261 (32%), Gaps = 37/261 (14%) Query: 12 VPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VI 68 VP + K Q + D + A E A + SW V+ Sbjct: 129 VPALAPTNGSKPSPVQ-----GLQERFTFDTFVPGPANEFAHAVARRVASWADGHFNPVL 183 Query: 69 LVGPSGSGKSCLANI--WSDKSRSTRFSNIAKSLDSIL------------------IDTR 108 GP G GK+ L N W ++ + + + L + Sbjct: 184 FHGPYGFGKTHLLNALAWEAMRQAPTKRVVYLTAERFLSTFVRAVMDRQTAAFKEELRGA 243 Query: 109 KPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 ++++D+ + + +LFH + ++ + ++ ++ P + L S L A Sbjct: 244 DLLIIDDVHFIAGKQSSQEELFHTLTALVEDGRRVVFSSDRAPAAMTEMDARLRSHLSAG 303 Query: 166 TVVKISLPDDDFLEKVIVKMFAD--RQ----IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 V + D ++ + RQ + ++ ++ R S+ E ++ + Sbjct: 304 LVCGLEPADRALRIGILERKLQALSRQHGFEPTLRAEVLNFLADRFTDSVRELEGALNTL 363 Query: 220 DNLALSRGMGITRSLAAEVLK 240 A +T +L+ Sbjct: 364 SARAGEGVSRLTLEEVQAILR 384 >gi|218134376|ref|ZP_03463180.1| hypothetical protein BACPEC_02270 [Bacteroides pectinophilus ATCC 43243] gi|217989761|gb|EEC55772.1| hypothetical protein BACPEC_02270 [Bacteroides pectinophilus ATCC 43243] Length = 342 Score = 95.6 bits (237), Expect = 6e-18, Method: Composition-based stats. Identities = 28/205 (13%), Positives = 72/205 (35%), Gaps = 25/205 (12%) Query: 67 VILVGPSGSGKSCLANIWSD-----KSRSTRFSNIAKSLDSILIDT-------------- 107 + + G +G GK+ L + +++ + LI++ Sbjct: 39 LFIYGGAGLGKTHLMQAIAHFIMQNNPDLKVLYVTSETFTNELIESLKNQKMTNQEFRNK 98 Query: 108 ---RKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161 +L++DI + + + FH N+++ + +++++ P L +R Sbjct: 99 YRNIDVLLIDDIQFIIGKESTQEEFFHTFNALYDANKQIVISSDKPPKEMETLTERLRTR 158 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 + I +P + ++ K I + Y+ ++ S+ E + K+ Sbjct: 159 FEMGLTADIQIPTYETKMAILNKKSEAEGYNIPDDVKDYVATHIKSSIRELEGALTKLVA 218 Query: 222 LALSRGMGITRSLAAEVLKETQQCD 246 + +T A + LK+ + Sbjct: 219 FSTLSHQPLTVEFAEDTLKDLISPE 243 >gi|224531666|ref|ZP_03672298.1| chromosomal replication initiator protein DnaA [Borrelia valaisiana VS116] gi|224511131|gb|EEF81537.1| chromosomal replication initiator protein DnaA [Borrelia valaisiana VS116] Length = 486 Score = 95.6 bits (237), Expect = 6e-18, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 78/209 (37%), Gaps = 26/209 (12%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRVV---ILVGPSGSGKSCLANIWSDKSRST-- 91 + ++ ++ + A S P + ++ G G GK+ L +K+ Sbjct: 146 RYTFENFIIGPNNKLAYNASLSISKNPGKKYNPCLIYGGVGLGKTHLLQSIGNKTEELHN 205 Query: 92 ---RFSNIAKSLDSILIDTRKP---------------VLLEDIDLLDFND---TQLFHII 130 A++ + +++ K +L++DI L + +LFH Sbjct: 206 NLKILYVTAENFLNEFVESIKTHETKKFKKKYRYLDMLLIDDIHDLQKKEGIQEELFHTF 265 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N++++ + L+ T P L +R V IS P+ + +I K + Sbjct: 266 NALYEDNKQLVFTCDRPPSELTNFTDRLKNRFTRGLNVDISKPNFELRVAIIEKKAEEDG 325 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 I + K + + Q++ ++ E V K+ Sbjct: 326 IKVPKNILNLVAQKVTTNVRDLEAAVTKL 354 >gi|94495384|ref|ZP_01301964.1| chromosomal replication initiator protein DnaA [Sphingomonas sp. SKA58] gi|94424772|gb|EAT09793.1| chromosomal replication initiator protein DnaA [Sphingomonas sp. SKA58] Length = 466 Score = 95.2 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 31/239 (12%), Positives = 74/239 (30%), Gaps = 27/239 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91 DD +V A + + + G +G GK+ L + + + Sbjct: 131 QPRHRLDDFVVGDTNRLAWSAAQAMAGEAQPRFTPLFIHGGTGQGKTHLLHGIAAAFSAH 190 Query: 92 RFSNIAKSLDS--------------------ILIDTRKPVLLEDIDLLDF---NDTQLFH 128 + + + + +L++DI + + H Sbjct: 191 SPKAPVLYMSAERFMMEFVNAMRANETMAFKARLRAARLLLIDDIQFIAGKGSTQEEFLH 250 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 IN + + +++TA P + SRL V I D D ++ A Sbjct: 251 TINDLIDSGARIVVTADRAPQMLESIDARILSRLAGGLVADIRPADLDLRLAILESKRAL 310 Query: 189 RQ-IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + + + ++ + + ++ E +K+ G + A ++L + + + Sbjct: 311 AGDMIVPDMVIDFLARSIRSNVRELEGAFNKLVAYGQLTGRAVDLDFAQQMLADAVRAN 369 >gi|329118144|ref|ZP_08246856.1| DNA-directed DNA replication initiator protein DnaA [Neisseria bacilliformis ATCC BAA-1200] gi|327465804|gb|EGF12077.1| DNA-directed DNA replication initiator protein DnaA [Neisseria bacilliformis ATCC BAA-1200] Length = 508 Score = 95.2 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 34/230 (14%), Positives = 76/230 (33%), Gaps = 26/230 (11%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRFS 94 + + L+ A S P + L G +G GK+ L ++ R Sbjct: 177 YTFETLVEGKGNRMAAAAARSIAENPGKSYNPFFLYGSTGLGKTHLVQAVGNELLKNRPD 236 Query: 95 NIAKSLDS--------------------ILIDTRKPVLLEDIDLLDFND---TQLFHIIN 131 + + S ++++DI + D + F++ N Sbjct: 237 AKVRYMHSDEYIRSFMKAVRHNGYDVFKQQYKQYDLLIIDDIQFIKGKDRTMEEFFYLYN 296 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 H L++T P L SR +++ P+ + ++ K + Sbjct: 297 HFHNEKKQLILTCDVLPAQIEGMDDRLKSRFSWGLTLELEPPEFEMRVAILQKKAEASGV 356 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + + A +I + + ++ E +++ + + I LA E L++ Sbjct: 357 TLCEDAAFFIAKYIRSNVRELEGAFKRVEASSRFQQKPIDIDLATEALQD 406 >gi|84684521|ref|ZP_01012422.1| chromosomal replication initiation protein [Maritimibacter alkaliphilus HTCC2654] gi|84667500|gb|EAQ13969.1| chromosomal replication initiation protein [Rhodobacterales bacterium HTCC2654] Length = 455 Score = 95.2 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 38/249 (15%), Positives = 82/249 (32%), Gaps = 34/249 (13%) Query: 31 SFPRCL---GISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIW 84 P + D +V E A + L G G GK+ L + Sbjct: 109 DLPGAPLDKRFTFDSFVVGKPNELAHAAARRVAEGGPVTFNPLFLYGGVGLGKTHLMHAI 168 Query: 85 SDK--SRSTRFSNIAKSLDSILIDTRKP------------------VLLEDIDLLDFND- 123 + + R + + S + + + ++++D+ + D Sbjct: 169 AHEMTERQPQLRVLYLSAEQFMYRFVQALRDKQMMDFKHMFRSVDVLMVDDVQFIAGKDS 228 Query: 124 --TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 + FH N++ + ++++A P + SRL+ VV + D + V Sbjct: 229 TQEEFFHTFNALIDQNKQIIISADRAPGEIKDLEERIKSRLQCGLVVDLHPTDYELRLGV 288 Query: 182 IVKMFADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236 + A + + I + ++ R+ ++ E + ++ A G IT A Sbjct: 289 LQSKVAAYRETYPDLSIADGVLEFLAHRITTNVRVLEGALMRLFAFASLVGGEITLDRAQ 348 Query: 237 EVLKETQQC 245 E L + + Sbjct: 349 ECLTDVLRA 357 >gi|325678552|ref|ZP_08158163.1| chromosomal replication initiator protein DnaA [Ruminococcus albus 8] gi|324109771|gb|EGC03976.1| chromosomal replication initiator protein DnaA [Ruminococcus albus 8] Length = 465 Score = 95.2 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 36/247 (14%), Positives = 89/247 (36%), Gaps = 40/247 (16%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDS---------------WPSWPSRVVILVGPSGSGKS 78 ++ ++ + S+ + A + P+ +I+ G SG GK+ Sbjct: 117 AKDSLTFENFVKGSSNDLAYAFCKAVAEKYDKDKHSTGDIDPNKVFNPLIIYGDSGLGKT 176 Query: 79 CLANIWSDK-------------SRSTRFSNIAKSLD-------SILIDTRKPVLLEDIDL 118 L + + + + ++L+ +L++DI + Sbjct: 177 HLMKAIEHEVNKNHPEMKIIYTTGEAFINELVRALELKETVDFHEKYRNADILLVDDIQI 236 Query: 119 LDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPD 174 + + + FH N ++ +++T+ P + L D + +RL + PD Sbjct: 237 IAGKERMQDEFFHTFNDLYNAGKQIVLTSDVLPSNI-TKLQDRIATRLSLGVQADVQPPD 295 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234 + +I + + + + I ++++ ++ E V K+ L + + S+ Sbjct: 296 FETRMAIINRKAELLGLKLSDNVVRLIAEKLKTNIRQLEGTVKKIKALTVYTNESPSVSM 355 Query: 235 AAEVLKE 241 A V+KE Sbjct: 356 AQRVIKE 362 >gi|328945174|gb|EGG39329.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus sanguinis SK1087] Length = 450 Score = 95.2 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 34/245 (13%), Positives = 82/245 (33%), Gaps = 30/245 (12%) Query: 29 FFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 + D+ + A+ + ++ + + + G G GK+ L N Sbjct: 107 PIDTGLKSKYTFDNFVQGDGNIWAKAAALAVSENLAT-TYNPLFIYGGPGLGKTHLLNAI 165 Query: 85 SDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDF--- 121 ++ K + + + + +L++DI L Sbjct: 166 GNQILENIPDARVKYIPAETFINDFLEHLRLGEMDSFKKIYRSLDLLLIDDIQSLGGKKV 225 Query: 122 -NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 + F+ N++H + +++T+ P L +R K I+ PD + Sbjct: 226 STQEEFFNTFNALHGENKQIVLTSDRSPDHLDNLEERLVTRFKWGLTQNITPPDFETRIA 285 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVL 239 ++ + Y+ + + ++ E ++ + +A R IT +AAE + Sbjct: 286 ILRNKIENLDYIFPNDTLEYLAGQFDSNVRDLEGALNDISLIARVRHLKEITIDIAAEAI 345 Query: 240 KETQQ 244 + +Q Sbjct: 346 RARKQ 350 >gi|325689354|gb|EGD31360.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus sanguinis SK115] Length = 450 Score = 95.2 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 34/245 (13%), Positives = 82/245 (33%), Gaps = 30/245 (12%) Query: 29 FFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 + D+ + A+ + ++ + + + G G GK+ L N Sbjct: 107 PIDTGLKSKYTFDNFVQGDGNIWAKAAALAVSENLAT-TYNPLFIYGGPGLGKTHLLNAI 165 Query: 85 SDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDF--- 121 ++ K + + + + +L++DI L Sbjct: 166 GNQILENIPDARVKYIPAETFINDFLEHLRLGEMDSFKKIYRSLDLLLIDDIQSLGGKKV 225 Query: 122 -NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 + F+ N++H + +++T+ P L +R K I+ PD + Sbjct: 226 STQEEFFNTFNALHGENKQIVLTSDRSPDHLDNLEERLVTRFKWGLTQNITPPDFETRIA 285 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVL 239 ++ + Y+ + + ++ E ++ + +A R IT +AAE + Sbjct: 286 ILRNKIENLDYIFPNDTLEYLAGQFDSNVRDLEGALNDISLIARVRHLKEITIDIAAEAI 345 Query: 240 KETQQ 244 + +Q Sbjct: 346 RARKQ 350 >gi|260434926|ref|ZP_05788896.1| chromosomal replication initiator protein DnaA [Synechococcus sp. WH 8109] gi|260412800|gb|EEX06096.1| chromosomal replication initiator protein DnaA [Synechococcus sp. WH 8109] Length = 465 Score = 95.2 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 41/239 (17%), Positives = 79/239 (33%), Gaps = 28/239 (11%) Query: 32 FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD-- 86 R +V A + P R + + G G GK+ L Sbjct: 126 LNPRYVFGR--FVVGPNSRMAHAAALAVAEAPGREFNPLFICGGVGLGKTHLMQAIGHYR 183 Query: 87 -----KSRSTRFSNIAKSLDSILI-------------DTRKPVLLEDIDLLDFND---TQ 125 ++R S + D I +L++DI ++ + + Sbjct: 184 LEIDPRARVAYVSTETFTNDLIQAIRKDGMQAFRDRYRAADLILVDDIQFIEGKEYTQEE 243 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 FH N++H+ +++ + P L SR + + I PD + ++ K Sbjct: 244 FFHTFNALHEAGRQVVIASDRPPSQIPRLQQRLISRFQMGLIADIQSPDLETRMAILQKK 303 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 ++ + + L YI R ++ E + + A G+ +T A +L T Q Sbjct: 304 AEQERMSLPRDLIQYIAGRFTSNIRELEGALTRAVAFASITGLPMTVESVAPMLDPTGQ 362 >gi|78212507|ref|YP_381286.1| chromosomal replication initiation protein [Synechococcus sp. CC9605] gi|78196966|gb|ABB34731.1| chromosomal replication initiator protein DnaA [Synechococcus sp. CC9605] Length = 450 Score = 95.2 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 40/254 (15%), Positives = 84/254 (33%), Gaps = 29/254 (11%) Query: 18 NDQPKNKEEQLFFS-FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPS 73 + +N ++ + R +V A + P R + + G Sbjct: 96 SAPARNGFQRRYLPGLNPRYVFGR--FVVGPNSRMAHAAALAVAEAPGREFNPLFICGGV 153 Query: 74 GSGKSCLANIWSD-----KSRSTRFSNIAKSLDSILIDT---------------RKPVLL 113 G GK+ L + ++ + LI +L+ Sbjct: 154 GLGKTHLMQAIGHYRLEIDPGARVAYVSTETFTNDLIQAIRKDGMQAFRDRYRAADLILV 213 Query: 114 EDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 +DI ++ + + FH N++H+ +++ + P L SR + + I Sbjct: 214 DDIQFIEGKEYTQEEFFHTFNALHEAGRQVVIASDRPPSQIPRLQQRLISRFQMGLIADI 273 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 PD + ++ K ++ + + L YI R ++ E + + A G+ + Sbjct: 274 QSPDLETRMAILQKKAEQERMSLPRDLIQYIAGRFTSNIRELEGALTRAVAFASITGLPM 333 Query: 231 TRSLAAEVLKETQQ 244 T A +L T Q Sbjct: 334 TVESVAPMLDPTGQ 347 >gi|297570614|ref|YP_003696388.1| chromosomal replication initiator protein DnaA [Arcanobacterium haemolyticum DSM 20595] gi|296930961|gb|ADH91769.1| chromosomal replication initiator protein DnaA [Arcanobacterium haemolyticum DSM 20595] Length = 544 Score = 95.2 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 35/236 (14%), Positives = 81/236 (34%), Gaps = 28/236 (11%) Query: 35 CLGISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGPSGSGKSCLANIW------- 84 + + ++ + A + P + L SG GK+ L + Sbjct: 196 NPRYTFETFVIGESNRFAHATALAVSEQPGSTYNPLFLYSESGMGKTHLLHAIGNSVQEM 255 Query: 85 ----------SDKSRSTRFSNIAKSLDSILID---TRKPVLLEDIDLLDFND-----TQL 126 +++ + + +A D T +L++DI L D + Sbjct: 256 FPNRKVLYVSAEEFTNAFINALANGQMHNFKDQFRTVDVLLIDDIQFLSGRDRSRTLEEF 315 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH N++ + +++T+ P + SR + I LP+ + ++ + Sbjct: 316 FHTFNALINANKQIVITSDVAPNLLVDFEDRMISRFNSGITAAIDLPNLETRIAILNRKA 375 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + + +I +M ++ E + ++ A I+ LA LK+ Sbjct: 376 VAEGLDVPRDVVEFIASKMTTNVREMEGALRRVRAFADLTKQSISLELAESQLKDM 431 >gi|269124278|ref|YP_003297648.1| chromosomal replication initiator protein DnaA [Thermomonospora curvata DSM 43183] gi|268309236|gb|ACY95610.1| chromosomal replication initiator protein DnaA [Thermomonospora curvata DSM 43183] Length = 721 Score = 95.2 bits (236), Expect = 8e-18, Method: Composition-based stats. Identities = 35/235 (14%), Positives = 85/235 (36%), Gaps = 28/235 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWS--DKSR 89 + + ++ S+ A + P++ + + G SG GK+ L + +S Sbjct: 381 NPKYTFETFVIGSSNRFAHAAAVAVAEQPAKAYNPLFIYGDSGLGKTHLLHAIGHYAQSL 440 Query: 90 STRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFH 128 + S + D + L++DI L+ + + FH Sbjct: 441 FSGVRVRYVSSEEFTNDFINAIRDGKADHFRRRYRDIDILLVDDIQFLEGKEQTQEEFFH 500 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 N++H +++++ P V L D L +R + + P+ + ++ K Sbjct: 501 TFNTLHNASKQIVISSDRPPKDL-VTLEDRLRNRFEWGLTTDVQPPELETRIAILQKKAR 559 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + + +I ++ ++ E + ++ A + +A VLK+ Sbjct: 560 QEGLAVPQDVVEFIASQIATNIRELEGALIRVTAYASLNRQSVDMRVAETVLKDL 614 >gi|15835844|ref|NP_300368.1| chromosomal replication initiation protein [Chlamydophila pneumoniae J138] gi|8978683|dbj|BAA98519.1| replication initiation factor [Chlamydophila pneumoniae J138] Length = 460 Score = 95.2 bits (236), Expect = 8e-18, Method: Composition-based stats. Identities = 30/214 (14%), Positives = 73/214 (34%), Gaps = 28/214 (13%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPS-------RVVILVGPSGSGKSCLAN---- 82 ++ + LV + R++ + P + L GP GSGK+ L Sbjct: 104 VNPEMTFSNFLVTPENDLPFRVLQEFTKSPDENGGVTFNPIYLFGPEGSGKTHLMQSAIS 163 Query: 83 IWSDKSRSTRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDF---NDTQ 125 + + + + + ++ R + +EDI++ + Sbjct: 164 VLRESGGKILYVSSDLFTEHLVSAIRSGEMQKFRSFYRNIDALFIEDIEVFSGKSATQEE 223 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 FH NS+H +++++ PV L SR + + I + L +++ Sbjct: 224 FFHTFNSLHSEGKLIVVSSSYAPVDLVAVEDRLISRFEWGVAIPIHPLVQEGLRSFLMRQ 283 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 I I + +++ + ++ ++ + Sbjct: 284 VERLSIRIQETALDFLIYALSSNVKTLLHALNLL 317 >gi|15618229|ref|NP_224514.1| chromosomal replication initiation protein [Chlamydophila pneumoniae CWL029] gi|16752730|ref|NP_444997.1| chromosomal replication initiation protein [Chlamydophila pneumoniae AR39] gi|33241653|ref|NP_876594.1| chromosomal replication initiation protein [Chlamydophila pneumoniae TW-183] gi|14194708|sp|Q9Z8M9|DNAA1_CHLPN RecName: Full=Chromosomal replication initiator protein DnaA 1 gi|4376586|gb|AAD18458.1| Replication Initiation Factor [Chlamydophila pneumoniae CWL029] gi|7189371|gb|AAF38287.1| chromosomal replication initiator protein DnaA [Chlamydophila pneumoniae AR39] gi|33236162|gb|AAP98251.1| replication initiation protein [Chlamydophila pneumoniae TW-183] Length = 460 Score = 95.2 bits (236), Expect = 8e-18, Method: Composition-based stats. Identities = 30/214 (14%), Positives = 73/214 (34%), Gaps = 28/214 (13%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSWPS-------RVVILVGPSGSGKSCLAN---- 82 ++ + LV + R++ + P + L GP GSGK+ L Sbjct: 104 VNPEMTFSNFLVTPENDLPFRVLQEFTKSPDENGGVTFNPIYLFGPEGSGKTHLMQSAIS 163 Query: 83 IWSDKSRSTRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDF---NDTQ 125 + + + + + ++ R + +EDI++ + Sbjct: 164 VLRESGGKILYVSSDLFTEHLVSAIRSGEMQKFRSFYRNIDALFIEDIEVFSGKSATQEE 223 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 FH NS+H +++++ PV L SR + + I + L +++ Sbjct: 224 FFHTFNSLHSEGKLIVVSSSYAPVDLVAVEDRLISRFEWGVAIPIHPLVQEGLRSFLMRQ 283 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 I I + +++ + ++ ++ + Sbjct: 284 VERLSIRIQETALDFLIYALSSNVKTLLHALNLL 317 >gi|296875521|ref|ZP_06899593.1| DNA-directed DNA replication initiator protein [Streptococcus parasanguinis ATCC 15912] gi|296433445|gb|EFH19220.1| DNA-directed DNA replication initiator protein [Streptococcus parasanguinis ATCC 15912] Length = 452 Score = 95.2 bits (236), Expect = 8e-18, Method: Composition-based stats. Identities = 33/244 (13%), Positives = 84/244 (34%), Gaps = 30/244 (12%) Query: 30 FSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 + D+ + A+ + ++ + + + G G GK+ L N Sbjct: 110 IDTGLKSKYTFDNFVQGDGNIWAKAAALAVSENLAT-TYNPLFIYGGPGLGKTHLLNAIG 168 Query: 86 DK-----SRSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLLDF---- 121 ++ + A++ + ++ + +L++DI L Sbjct: 169 NQILENIPNARVKYVPAETFINEFLEHLRLGEMKTFKNTYRSLDLLLIDDIQSLGGKKVT 228 Query: 122 NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 + F+ N++H + +++T+ P L +R K I+ PD + + Sbjct: 229 TQEEFFNTFNALHSDNKQIVLTSDRSPDHLDSLEERLVTRFKWGLTQNITPPDFETRIAI 288 Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVLK 240 + D Y+ + + ++ E ++ + +A + IT +AAE ++ Sbjct: 289 LRNKIEDLDYIFPNDTLEYLAGQFDSNVRDLEGALNDISLMAKVKKLKEITIDVAAEAIR 348 Query: 241 ETQQ 244 + Sbjct: 349 ARKN 352 >gi|301165372|emb|CBW24943.1| Chromosomal replication initiator protein dnaA [Bacteriovorax marinus SJ] Length = 437 Score = 95.2 bits (236), Expect = 8e-18, Method: Composition-based stats. Identities = 33/234 (14%), Positives = 78/234 (33%), Gaps = 29/234 (12%) Query: 35 CLGISRDDLLVHSAIEQAVR---LIDSWPS--WPSRVVILVGPSGSGKSCL--------- 80 + D+ +V + A I P + + SG GK+ L Sbjct: 102 DPTKTFDNFIVGPSNNLAHATAVAISRTPGDQGKYPSLYIHSNSGLGKTHLLYAVANGIK 161 Query: 81 ------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF---NDTQ 125 A + + + S + ++++DI L + Sbjct: 162 ENFPQYVVYLTTARDFMKEYIESVKSKTVDAFQEKFTKKIDVLMIDDIHELKGKKGTQDE 221 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 LFH+ N ++ L+ T+ P + +RL+ V+ I PD + ++ + Sbjct: 222 LFHVFNGLYTNGKQLIFTSDKSPEEIDGIEERIKTRLQWGLVIDIQKPDFETRIAILKRK 281 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + +++ + I ++ ++ E + K+ A + + + ++L Sbjct: 282 AYELDLYLQDDILTLIANSIKTNIRELEGSLVKLCAYADVMNVEVDTEMVKDIL 335 >gi|317054732|ref|YP_004103199.1| chromosomal replication initiator protein DnaA [Ruminococcus albus 7] gi|315447001|gb|ADU20565.1| chromosomal replication initiator protein DnaA [Ruminococcus albus 7] Length = 459 Score = 94.8 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 40/241 (16%), Positives = 84/241 (34%), Gaps = 38/241 (15%) Query: 38 ISRDDLLVHSAIEQAVRLIDS-------------WPSWPSRVVILVGPSGSGKSCLANIW 84 + D+ + S+ A + P +I+ G SG GK+ L Sbjct: 117 YTFDNFIRGSSNSLAYAFCKAVAEKYDAKNSDNVDPDKVFNPLIIYGDSGLGKTHLMKAI 176 Query: 85 SDK-------------SRSTRFSNIAKSLD-------SILIDTRKPVLLEDIDLLDFNDT 124 K + + + K+L+ +L++DI ++ + Sbjct: 177 EYKVSKDHPDLKIIYTTGEAFINELVKALEFKDTVNFHEKYRNADLLLVDDIQIIAGKER 236 Query: 125 ---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS-RLKAATVVKISLPDDDFLEK 180 + FH N ++ ++ T+ P L D S RL + + PD + Sbjct: 237 MQDEFFHTFNELYNARKQIVFTSDVLPSKMS-KLQDRISTRLSLGVLADVQAPDFETRMA 295 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 +I + + + + I ++++ ++ E V K+ L + + S+A V+K Sbjct: 296 IINRKAELLGLKLSDNVVRLIAEKLKTNIRQLEGTVKKIKALTMYTNESPSISMAQRVIK 355 Query: 241 E 241 E Sbjct: 356 E 356 >gi|307717718|ref|YP_003873250.1| chromosomal replication initiator protein DnaA [Spirochaeta thermophila DSM 6192] gi|306531443|gb|ADN00977.1| chromosomal replication initiator protein DnaA [Spirochaeta thermophila DSM 6192] Length = 452 Score = 94.8 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 31/198 (15%), Positives = 68/198 (34%), Gaps = 23/198 (11%) Query: 68 ILVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDTR-------------- 108 ++ G G GK+ L ++ + A+ + I + Sbjct: 150 LIYGGVGLGKTHLLQSIGNSVYGEFHNLKVVYVTAEEFTNEFIASIQNKETHKFKTKYRN 209 Query: 109 -KPVLLEDID---LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164 +L++DI +LFH N+++ + ++ T L SR + Sbjct: 210 VDVLLIDDIHFFMNKTETQEELFHTFNALYDANKQMVFTCDRPVSELKNISHRLRSRFER 269 Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 V + P + ++ K + + I ++ +I + + ++ E + K+ A Sbjct: 270 GLNVDLQPPSFETRYAILKKKIEQKTVHIPDEVITFIAEHVTTNVRDLEAALTKLIAYAE 329 Query: 225 SRGMGITRSLAAEVLKET 242 IT +A LK+ Sbjct: 330 LVHRDITIDIAKSQLKDM 347 >gi|297558986|ref|YP_003677960.1| chromosomal replication initiator protein DnaA [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843434|gb|ADH65454.1| chromosomal replication initiator protein DnaA [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 652 Score = 94.8 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 35/256 (13%), Positives = 89/256 (34%), Gaps = 33/256 (12%) Query: 13 PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVIL 69 P + + P + D ++ S+ A P+ + + Sbjct: 298 PGRSQEVPPGEHAR-------LNPKYTFDTFVIGSSNRFAHAASVAAAEAPAKAYNPLFI 350 Query: 70 VGPSGSGKSCLANIWSD------KSRSTRFSNIAKSLDSILIDTRKP------------- 110 G SG GK+ L + + R+ + + + + R Sbjct: 351 HGGSGLGKTHLLHAIGHYTHRLYEGSRVRYVSSEEFTNEFINSIRDGKADGFRRRYRDID 410 Query: 111 -VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 +L++DI L+ + + FH N++H D +++++ P + SR + Sbjct: 411 VLLVDDIQFLENKEQTQEEFFHTFNTLHNSDKQIVISSDRPPKQLTTLEDRMRSRFEWGL 470 Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 + + P+ + ++ K A + ++ +I ++ ++ E + ++ A Sbjct: 471 LTDVQPPELETRIAILRKKAAQEGLAAPPEVLEFIASKISTNIRELEGALIRVTAFASLN 530 Query: 227 GMGITRSLAAEVLKET 242 + L ++VL++ Sbjct: 531 RQSVDLDLTSQVLRDL 546 >gi|95929986|ref|ZP_01312726.1| chromosomal replication initiator protein DnaA [Desulfuromonas acetoxidans DSM 684] gi|95133955|gb|EAT15614.1| chromosomal replication initiator protein DnaA [Desulfuromonas acetoxidans DSM 684] Length = 444 Score = 94.8 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 30/198 (15%), Positives = 75/198 (37%), Gaps = 23/198 (11%) Query: 67 VILVGPSGSGKSCLANIWSDK------------------SRSTRFSNIAKSLDSIL--ID 106 + + G G GK+ L N ++ + S +D Sbjct: 144 LFIYGGVGLGKTHLINAIGNEIIKNNKKIKVSYYSSEKFTNELINSIRYGKMDEFRNKFR 203 Query: 107 TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 + +L++D+ + + + FH NS+++ +++T+ FP L SR + Sbjct: 204 SIDVLLIDDVQFIAGKERTQEEFFHTFNSLYESHKQIVVTSDKFPKEIPGLEERLRSRFE 263 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + I PD + + ++ I + +++A ++ + ++ E + ++ + Sbjct: 264 WGLIADIQPPDIETKQAILEAKAEQNNIILPQEVALFLSNSVISNIRELEGYLVRIGAYS 323 Query: 224 LSRGMGITRSLAAEVLKE 241 I+ +A +LK+ Sbjct: 324 SLTSTPISIEMAKNILKD 341 >gi|319945982|ref|ZP_08020231.1| DNA-directed DNA replication initiator protein [Streptococcus australis ATCC 700641] gi|319747790|gb|EFW00035.1| DNA-directed DNA replication initiator protein [Streptococcus australis ATCC 700641] Length = 456 Score = 94.8 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 33/237 (13%), Positives = 83/237 (35%), Gaps = 30/237 (12%) Query: 37 GISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK----- 87 + D+ + A+ + ++ + + + G G GK+ L N ++ Sbjct: 121 KYTFDNFVSGDGNQWALAAALAVSENLAT-TYNPLFIYGGPGLGKTHLLNAIGNQIMENY 179 Query: 88 -SRSTRFSNIAKSLDSILIDTR--------------KPVLLEDIDLLDF----NDTQLFH 128 + ++ ++ L R +L++DI L + F+ Sbjct: 180 PNARVKYIPAESFINEFLERLRLNDMDTFKKTYRNLDLLLIDDIQSLGGKKVTTQEEFFN 239 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N+++ + +++T+ P L +R K I+ PD + ++ D Sbjct: 240 TFNALYGDNKQIVLTSDRSPDHLDSLEERLVTRFKWGLTQNITPPDFETRIAILRNKIED 299 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVLKETQQ 244 Y+ + + ++ E ++ + +A + IT +AAE ++ + Sbjct: 300 LDFTFPDDTLEYLAGQFDSNVRDLEGALNDISLVARVKKIKDITIDVAAEAIRARKN 356 >gi|332286195|ref|YP_004418106.1| chromosomal replication initiation protein [Pusillimonas sp. T7-7] gi|330430148|gb|AEC21482.1| chromosomal replication initiation protein [Pusillimonas sp. T7-7] Length = 466 Score = 94.8 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 33/232 (14%), Positives = 84/232 (36%), Gaps = 27/232 (11%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDKSRS---- 90 ++ D+ + A + A P + L G G GK+ L + + + Sbjct: 134 LTFDNFVTGKANQLARAAALQVAENPGVSYNPLFLYGGVGLGKTHLIHAIGNTLLANGNG 193 Query: 91 --TRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFHIIN 131 R+ + + + ++ + +L++DI + F+ Sbjct: 194 TRVRYVHADQYVSDVVKAYQRKAFDEFKRYYHSLDLLLIDDIQFFAGKNRTQEEFFYAFE 253 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 ++ +++T+ T+P L SR + V I P+ + +++ + Sbjct: 254 AMVAQRKQIIITSDTYPKELSNIDSRLISRFDSGLTVAIEPPELEMRVAILLHKAQTEGV 313 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI-TRSLAAEVLKET 242 + +++A +I + + ++ E + K+ A G + T + + LK+ Sbjct: 314 TMPEEVAFFIAKHLRSNVRELEGALRKVSAYARFHGREVLTVDVCKDALKDL 365 >gi|187479881|ref|YP_787906.1| chromosomal replication initiation protein [Bordetella avium 197N] gi|123765885|sp|Q2KTI9|DNAA_BORA1 RecName: Full=Chromosomal replication initiator protein DnaA gi|115424468|emb|CAJ51022.1| chromosomal replication initiator protein [Bordetella avium 197N] Length = 483 Score = 94.8 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 37/232 (15%), Positives = 82/232 (35%), Gaps = 27/232 (11%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIW-----SDKSR 89 ++ ++ + A + A P + L G G GK+ L + + + Sbjct: 151 LTFENFVTGKANQLARAAALQVAENPGTSYNPLFLYGGVGLGKTHLIHAIGNAMVAAGTG 210 Query: 90 STRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFNDTQLFHIINSIHQY------ 136 A S ++ + +D +DLL +D Q F N + Sbjct: 211 VRVRYVHADQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKNRTQEEFFYAFE 270 Query: 137 -----DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 +++T+ T+P L SR + V I P+ + ++++ + Sbjct: 271 AMVAQRKQIIITSDTYPKELSGIDSRLISRFDSGLTVAIEPPELEMRVAILLRKAESEGV 330 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM-GITRSLAAEVLKET 242 + +++A +I + + ++ E + K+ A G + + E LK+ Sbjct: 331 PMPEEVAFFIAKHLRSNVRELEGALRKVLAYARFHGREALNVDVCKEALKDL 382 >gi|15835139|ref|NP_296898.1| chromosomal replication initiation protein [Chlamydia muridarum Nigg] gi|270285311|ref|ZP_06194705.1| chromosomal replication initiation protein [Chlamydia muridarum Nigg] gi|270289328|ref|ZP_06195630.1| chromosomal replication initiation protein [Chlamydia muridarum Weiss] gi|301336708|ref|ZP_07224910.1| chromosomal replication initiation protein [Chlamydia muridarum MopnTet14] gi|14194690|sp|Q9PKE4|DNAA1_CHLMU RecName: Full=Chromosomal replication initiator protein DnaA 1 gi|7190562|gb|AAF39363.1| chromosomal replication initiator protein DnaA [Chlamydia muridarum Nigg] Length = 456 Score = 94.8 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 34/213 (15%), Positives = 71/213 (33%), Gaps = 28/213 (13%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWP-------SWPSRVVILVGPSGSGKSCLANIWSDK 87 +S + LV + VR++ + +P + L GP SGK+ L Sbjct: 104 DPQMSFANFLVTPENDLPVRILQEFAKVSEQGKGFPFNPIYLFGPESSGKTHLMQAAVGI 163 Query: 88 SRSTRFSNIAKSLD------------------SILIDTRKPVLLEDIDLLDF---NDTQL 126 R + S + + +EDI++L + Sbjct: 164 LREAGVKTLYVSSQLFTEHLVSAIRSGEMQRFRAFYRNVEALFIEDIEVLSGKGATQEEF 223 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH NS+H +++++ P L SR + V +S + L+ + + Sbjct: 224 FHTFNSLHTEGKLIVISSIFAPGDLKAMEERLISRFEWGIAVPVSPLTREGLKSFLERRI 283 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 I I++ +++Q + + + + Sbjct: 284 EQLNIRIEETALDFLIQALSSHIKSLLHALTTL 316 >gi|315187335|gb|EFU21091.1| chromosomal replication initiator protein DnaA [Spirochaeta thermophila DSM 6578] Length = 452 Score = 94.8 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 68/198 (34%), Gaps = 23/198 (11%) Query: 68 ILVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDTR-------------- 108 ++ G G GK+ L ++ + A+ + I + Sbjct: 150 LIYGGVGLGKTHLLQSIGNSVYGEFQNLKVVYVTAEEFTNEFIASIQNKETHKFKTKYRN 209 Query: 109 -KPVLLEDID---LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164 +L++DI +LFH N+++ + ++ T L SR + Sbjct: 210 VDVLLIDDIHFFMNKTETQEELFHTFNALYDANKQMVFTCDRPVSELKNISHRLRSRFER 269 Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 V + P + ++ K + I I ++ +I + + ++ E + K+ A Sbjct: 270 GLNVDLQPPSFETRYAILKKKIEQKPIHIPDEVITFIAEHVTTNVRDLEAALTKLIAYAE 329 Query: 225 SRGMGITRSLAAEVLKET 242 IT +A LK+ Sbjct: 330 LVHRDITIDIAKSQLKDM 347 >gi|15604971|ref|NP_219755.1| chromosomal replication initiation protein [Chlamydia trachomatis D/UW-3/CX] gi|76788972|ref|YP_328058.1| chromosomal replication initiation protein [Chlamydia trachomatis A/HAR-13] gi|237802673|ref|YP_002887867.1| chromosomal replication initiation protein [Chlamydia trachomatis B/Jali20/OT] gi|237804595|ref|YP_002888749.1| chromosomal replication initiation protein [Chlamydia trachomatis B/TZ1A828/OT] gi|255311051|ref|ZP_05353621.1| chromosomal replication initiation protein [Chlamydia trachomatis 6276] gi|255317352|ref|ZP_05358598.1| chromosomal replication initiation protein [Chlamydia trachomatis 6276s] gi|14194662|sp|O84252|DNAA1_CHLTR RecName: Full=Chromosomal replication initiator protein DnaA 1 gi|3328661|gb|AAC67843.1| Replication Initiation Factor [Chlamydia trachomatis D/UW-3/CX] gi|76167502|gb|AAX50510.1| DnaA [Chlamydia trachomatis A/HAR-13] gi|231272895|emb|CAX09806.1| Chromosomal replication initiation protein [Chlamydia trachomatis B/TZ1A828/OT] gi|231273907|emb|CAX10699.1| Chromosomal replication initiation protein [Chlamydia trachomatis B/Jali20/OT] gi|296435766|gb|ADH17940.1| chromosomal replication initiation protein [Chlamydia trachomatis G/9768] gi|296436690|gb|ADH18860.1| chromosomal replication initiation protein [Chlamydia trachomatis G/11222] gi|296437626|gb|ADH19787.1| chromosomal replication initiation protein [Chlamydia trachomatis G/11074] gi|297140125|gb|ADH96883.1| chromosomal replication initiation protein [Chlamydia trachomatis G/9301] gi|297748380|gb|ADI50926.1| DnaA [Chlamydia trachomatis D-EC] gi|297749260|gb|ADI51938.1| DnaA [Chlamydia trachomatis D-LC] Length = 456 Score = 94.8 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 32/213 (15%), Positives = 72/213 (33%), Gaps = 28/213 (13%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWP-------SWPSRVVILVGPSGSGKSCLANIWSDK 87 +S + LV + VR++ + +P + L GP SGK+ L Sbjct: 104 DPNMSFANFLVTPENDLPVRILQEFAKVSEQGKGFPFNPIYLFGPESSGKTHLMQAAVGG 163 Query: 88 SRSTRFSNIAKSLD------------------SILIDTRKPVLLEDIDLLDF---NDTQL 126 R + + + + + +EDI++L + Sbjct: 164 LREAGVKTLYVTSELFTEHLVSAIRSGEMQRFRAFYRNVEALFIEDIEVLSGKGATQEEF 223 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH NS+H +++++ P L SR + + +S + L+ + + Sbjct: 224 FHTFNSLHTEGKLIVISSTFAPGDLKAMEERLISRFEWGISIPVSPLIREGLKSFLERRT 283 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 I I++ +++Q + + + + Sbjct: 284 EKLNIRIEETALDFLIQALSSHVKSLLHALTTL 316 >gi|159903109|ref|YP_001550453.1| chromosomal replication initiation protein [Prochlorococcus marinus str. MIT 9211] gi|226735832|sp|A9BEI9|DNAA_PROM4 RecName: Full=Chromosomal replication initiator protein DnaA gi|159888285|gb|ABX08499.1| chromosomal replication initiator protein DnaA [Prochlorococcus marinus str. MIT 9211] Length = 454 Score = 94.4 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 35/228 (15%), Positives = 78/228 (34%), Gaps = 26/228 (11%) Query: 43 LLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWS------DKSRSTRF 93 +V A S P++ + + G G GK+ L D + Sbjct: 124 FVVGPNSRIAHAAAMSVAEAPAKEFNPLFICGGVGLGKTHLMQAIGHYRLEIDPGAKVSY 183 Query: 94 SNIAKSLDSILID--------------TRKPVLLEDIDLLDFND---TQLFHIINSIHQY 136 + + +++ +L++DI L+ + + FH N++H+ Sbjct: 184 VSTETFTNDLIVAIRQDGMQSFRDKYRAADLILVDDIQFLEGKEYTQEEFFHTFNALHES 243 Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196 + +++ + P L SR + + PD + ++ K ++ + + Sbjct: 244 GTQIVLASDRPPNQIPRLQERLISRFSMGLIADVQAPDLETRMAILQKKAEQDRVRLPRD 303 Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 L +I R ++ E + + A G+ +T A +L Q Sbjct: 304 LIQFIAGRFTLNIRELEGALTRAVAFASITGLPMTVESIAPMLDPNGQ 351 >gi|227485757|ref|ZP_03916073.1| DNA-directed DNA replication initiator protein [Anaerococcus lactolyticus ATCC 51172] gi|227236312|gb|EEI86327.1| DNA-directed DNA replication initiator protein [Anaerococcus lactolyticus ATCC 51172] Length = 459 Score = 94.4 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 79/236 (33%), Gaps = 41/236 (17%) Query: 14 DKQKNDQPKNKEE-QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSR------- 65 + + D+ K+ + QL ++ + + + A+ + + SR Sbjct: 104 GQMRIDKVKSFPKPQL------EEANVFENFVQGKSNQYALGISQAVADTISRGDVSKVY 157 Query: 66 -VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI------------------- 105 + + G SG GK+ L + + R L S Sbjct: 158 NPLFIYGSSGLGKTHLIQAIAHQILEARDDAYVMYLSSEKFTNEMIAALRTNKNQEFREK 217 Query: 106 -DTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161 + +L++DI + + + FH N ++ +++T+ P L SR Sbjct: 218 YRSADILLIDDIQFIANKEATQEEFFHTFNDLYNAGKQIVITSDKPPREIKHLEDRLVSR 277 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---RSLVFAEK 214 + IS PD + ++ K D ID + +YI ++ R L A Sbjct: 278 FNYGIIADISRPDYETRVAILQKKLEDLGAIIDNSILSYIALEIDTNIRDLEGALS 333 >gi|119953225|ref|YP_945434.1| chromosomal replication initiator protein DnaA [Borrelia turicatae 91E135] gi|254777889|sp|A1QZM2|DNAA_BORT9 RecName: Full=Chromosomal replication initiator protein DnaA gi|119861996|gb|AAX17764.1| chromosomal replication initiator protein DnaA [Borrelia turicatae 91E135] Length = 484 Score = 94.4 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 35/209 (16%), Positives = 78/209 (37%), Gaps = 26/209 (12%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRVV---ILVGPSGSGKSCLANIWSDKSRSTR- 92 + ++ ++ + A S P + ++ G G GK+ L +K+ Sbjct: 145 KYTFENFIIGPNNKLAYNASLSIAKNPGKKYNPCLIYGGVGLGKTHLLQSIGNKTEELHK 204 Query: 93 -FSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFHII 130 F + + ++ L + + + L++DI L + +LFH Sbjct: 205 EFKILYVTAENFLNEFVESIKTNETKRFKKKYRHLDMLLIDDIHDLQKKEGIQEELFHTF 264 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N++++ + ++ T P L SR V IS P+ + +I K + Sbjct: 265 NALYEDNKQMVFTCDRQPSELINFTDRLKSRFTRGLNVDISKPNFELRVAIIEKKAEEDG 324 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 I + K + + +++ ++ E V K+ Sbjct: 325 IKVPKNILNLVAKKVTTNIRDLEAAVTKL 353 >gi|254503456|ref|ZP_05115607.1| chromosomal replication initiator protein DnaA [Labrenzia alexandrii DFL-11] gi|222439527|gb|EEE46206.1| chromosomal replication initiator protein DnaA [Labrenzia alexandrii DFL-11] Length = 492 Score = 94.4 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 38/239 (15%), Positives = 79/239 (33%), Gaps = 28/239 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRST 91 + + + + A+ S + L G GK+ L + K R++ Sbjct: 155 DPKYTFETFVEGDSNNLALAAARQVASGGAVTFNPLYLHASVGLGKTHLMQAVASKVRNS 214 Query: 92 RFSNIAKSLDS------ILIDTRKPVLLED----IDLLDFNDTQLFH----------IIN 131 + + + + ++ + +D IDLL +D Q H +N Sbjct: 215 GRKVLYLTAEHFMYKFVAALKSQSALAFKDNLRTIDLLLIDDMQFLHGKQVQQEFCHTLN 274 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR-- 189 ++ +++ A P + SRL VV I PD ++V Sbjct: 275 ALIDGARQVIVAADRPPSDLDTLDDRVRSRLSGGLVVGIQEPDFVLRRSILVSRVEAAHK 334 Query: 190 ---QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 Q + + YI + + S E ++++ IT+ +A L++ + Sbjct: 335 SYPQFDVPDSVLDYIARHVASSGRDLEGALNRLIAHNQLTNQPITQEMAEMTLRDLVRS 393 >gi|329768086|ref|ZP_08259595.1| chromosomal replication initiator protein DnaA [Gemella haemolysans M341] gi|328838241|gb|EGF87853.1| chromosomal replication initiator protein DnaA [Gemella haemolysans M341] Length = 494 Score = 94.4 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 35/241 (14%), Positives = 76/241 (31%), Gaps = 38/241 (15%) Query: 38 ISRDDLLVHSAIEQAVRLIDSW-----PSWPSRVVILVGPSGSGKSCLANIWSDKSRS-- 90 + ++ +V + +W P + + G G GK+ L + ++ + Sbjct: 154 YTFENFVVGEGNAFTHNI--AWNVAVSPGGIYNPLFIYGGVGLGKTHLLHAIGNEMEANF 211 Query: 91 ------------------TRFSNIAKSLDSILIDTR--------KPVLLEDIDLLDF--- 121 + + D +L++DI L Sbjct: 212 PDFKIECISSEKFLNEFLASIKPMKDKNNYTNADEDFRRKYRDVDALLIDDIQFLSGKTE 271 Query: 122 NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 FH N + +++ + P L +R I+ PD + + Sbjct: 272 TQNAFFHTFNELQMNQKQIVLISDRSPSQLNDLEDRLVTRFSQGITADITPPDFETRMAI 331 Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 I I +D++ YI + ++ E ++ ++ A S+ + S+A E+LK Sbjct: 332 IKFKCEQFDIKLDEETLTYISSNVSSNIRELEGVLKRIKFTATSKHEQPSLSIAEEILKS 391 Query: 242 T 242 Sbjct: 392 A 392 >gi|298369733|ref|ZP_06981050.1| DNA replication initiator protein [Neisseria sp. oral taxon 014 str. F0314] gi|298282290|gb|EFI23778.1| DNA replication initiator protein [Neisseria sp. oral taxon 014 str. F0314] Length = 504 Score = 94.4 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 34/230 (14%), Positives = 74/230 (32%), Gaps = 26/230 (11%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRFS 94 + + L+ A S P + L G +G GK+ L ++ R Sbjct: 173 YTFETLVEGKGNRIAAAAAQSIAENPGQSYNPFFLYGSTGLGKTHLVQAIGNELLKNRPD 232 Query: 95 NIAKSLDS--------------------ILIDTRKPVLLEDIDLLDFND---TQLFHIIN 131 + + S ++++DI + D + F++ N Sbjct: 233 AKVRYMHSDDYIRSFMSAVRTNSYDVFKQQYKQYDLLIIDDIQFIKGKDRTMEEFFYLYN 292 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 H L++T P L SR +++ P+ + ++ K I Sbjct: 293 HFHNEKKQLILTCDVLPAKIEDMDDRLKSRFSWGLTLELEPPELEMRVAILQKKAESSGI 352 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + + A +I + ++ E +++ + I LA + L++ Sbjct: 353 SLTDEAAFFIANLIRSNVRELEGAFNRVSASSRFMNKPIDIDLARDALQD 402 >gi|312869247|ref|ZP_07729419.1| chromosomal replication initiator protein DnaA [Lactobacillus oris PB013-T2-3] gi|311095268|gb|EFQ53540.1| chromosomal replication initiator protein DnaA [Lactobacillus oris PB013-T2-3] Length = 435 Score = 94.4 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 45/262 (17%), Positives = 95/262 (36%), Gaps = 28/262 (10%) Query: 10 FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS--RVV 67 + + +QK+ +P+ + P + + +V + A + P + Sbjct: 78 YVLTGEQKSPKPQPSAVPTS-NIPLNPYYNFETFVVGDGNKIAHAAALNAAERPGYMNPL 136 Query: 68 ILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTRK- 109 + G G GK+ L S++ + ++I K + + Sbjct: 137 FIYGGVGLGKTHLMEAIGNYMLKINKNARVKYVTSEEFTNDFINSIQKRTTEQFREEYRN 196 Query: 110 --PVLLEDIDLLD---FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLK 163 +L++DI L + F+ N+++ +++T+ P L D L SR Sbjct: 197 LDLLLIDDIQFLADKEGTQIEFFNTFNTLYDQQKQIVLTSDRMPREIP-ELQDRLVSRFM 255 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 V+I+ PD + ++ + I I YI +++ ++ E + K+ A Sbjct: 256 WGMPVEITPPDLETRIAILRSKVEEDHIDIGNDTLNYIAGQIDTNVRELEGALTKVQVYA 315 Query: 224 LSRGMGITRSLAAEVLKETQQC 245 IT LA+ LK+ + Sbjct: 316 DLSNEIITPHLASRALKDFRHS 337 >gi|322373978|ref|ZP_08048512.1| replication initiation protein DnaA [Streptococcus sp. C150] gi|321276944|gb|EFX54015.1| replication initiation protein DnaA [Streptococcus sp. C150] Length = 454 Score = 94.4 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 42/268 (15%), Positives = 86/268 (32%), Gaps = 37/268 (13%) Query: 2 NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRL---IDS 58 N+ D+S + P + + D+ + +V + Sbjct: 91 NVTTNDFS----SNKDLQSPALP----TLNSDLNSKYTFDNFIQGDENRWSVAASLAVAD 142 Query: 59 WPSWPSRVVILVGPSGSGKSCLANIWSDKS------------------RSTRFSNIAKSL 100 P + + G G GK+ L N +K + Sbjct: 143 SPGATYNPLFIYGGPGLGKTHLLNAIGNKVLHDNPQARIKYITAENFINEFVVHIRLDKM 202 Query: 101 DSILIDTR--KPVLLEDIDLLD-----FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 D + + R +L++DI L + F+ N +H + +++T+ P Sbjct: 203 DELKLKYRHLDVLLIDDIQSLAKKSTQATQEEFFNTFNVLHNNNKQIVLTSDRNPDQLNE 262 Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213 L +R K V I+ PD + ++ D + Y+ + + ++ E Sbjct: 263 MEERLVTRFKWGLTVNITPPDFETRVAILTNKIMDYDYHFPSETIEYLAGQFDSNVRDLE 322 Query: 214 KLVDKMDNLALSRG-MGITRSLAAEVLK 240 + + +A R IT +AAE ++ Sbjct: 323 GALKDISLVANVRQLDTITVEVAAEAIR 350 >gi|289177770|gb|ADC85016.1| DnaA [Bifidobacterium animalis subsp. lactis BB-12] Length = 587 Score = 94.4 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 36/236 (15%), Positives = 84/236 (35%), Gaps = 34/236 (14%) Query: 40 RDDLLVHSAIEQAVRLIDSWPSWPSR---VVILVGPSGSGKSCLANI---WSDKSRSTRF 93 D + + A + + R + + G SG GK+ L + ++ +++ R Sbjct: 247 FDTFIQGDSNRFARTVALAVAEGSGRDYNPLCIYGGSGLGKTHLLHAIGNYAVQNQKPRP 306 Query: 94 SNIAKSLDSILIDTRKPV-------------------------LLEDIDLLDFND---TQ 125 + + + D + + L++DI L Q Sbjct: 307 RVLYVTSEEFTNDFIESIRTSGQDNEDPAMEKFYRKYREVDVLLIDDIQFLGGKRGILEQ 366 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 FH NS++Q + +++ + P + L SR + V + P+ + ++ + Sbjct: 367 FFHTFNSLYQANKRIVIASDVPPHNLEDFEDRLISRFEQGITVDVKPPNLETRIAILRML 426 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 I + + I +R ++ E + ++ +A +TR+L L++ Sbjct: 427 AEQNHIRVPNDVLNLIAERFANNVRELEGALKRVIAMASLNHQPVTRALTERTLQD 482 >gi|51244130|ref|YP_064014.1| chromosomal replication initiator protein DnaA [Desulfotalea psychrophila LSv54] gi|50875167|emb|CAG35007.1| related to chromosomal replication initiator protein DnaA [Desulfotalea psychrophila LSv54] Length = 487 Score = 94.4 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 40/238 (16%), Positives = 88/238 (36%), Gaps = 27/238 (11%) Query: 36 LGISRDDLLVHSAI---EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN---------- 82 + D+ +V + E A R I + + + +G GKS L + Sbjct: 154 PRYTFDEFMVGQSNILAESACRAISADADTVGPCLYINSGTGLGKSHLTHAVAHHLLSNS 213 Query: 83 -------IWSDKSRSTRFSNIAKSLDSIL----IDTRKPVLLEDIDLLDF---NDTQLFH 128 + + + + I + + + +L+EDI L +L Sbjct: 214 PMTRMHYVTAQQFSAEMVHGIKNNSMDMFKKKYQEDCDILLVEDIHTLKGKKKTQEELNE 273 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 +++++ + +L+TA P + SR+ A + I PD +++ + A Sbjct: 274 VLDTLVKSGKRVLLTANAAPRELAGIDGEFRSRMSAGLITSIQAPDIKTRSRIVERKAAG 333 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 +++ D+ + +Y+ Q + + E + + A G I +L EV+ C+ Sbjct: 334 QRLSFDEDMTSYLAQNVRGDVRQIESAITAIGARARLMGGYIDMNLIREVVGSVVGCN 391 >gi|87122918|ref|ZP_01078783.1| chromosomal replication initiator protein DnaA [Marinomonas sp. MED121] gi|86161791|gb|EAQ63091.1| chromosomal replication initiator protein DnaA [Marinomonas sp. MED121] Length = 376 Score = 94.4 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 31/202 (15%), Positives = 68/202 (33%), Gaps = 31/202 (15%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW------- 84 + D+ + + + A + P + + G G GK+ L Sbjct: 178 NNSFTFDNFVEGKSNQLAHAAALQVAENPGGAYNPLFIYGGVGLGKTHLMQAVGTELMRH 237 Query: 85 ---------------SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQL 126 +D ++ + + I + +L++DI D + Sbjct: 238 NPNAKVVYLHSERFVADMVKALQLNAINDFKR--YYRSVDALLIDDIQFFAGKDRTQEEF 295 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH N++ + +++T +P L SR V I P+ + ++++ Sbjct: 296 FHTFNALLEGGQQMILTCDRYPKEIKGLEDRLKSRFGWGLTVAIEPPELETRVAILMRKA 355 Query: 187 ADRQIFIDKKLAAYIVQRMERS 208 + I + A +I Q++ RS Sbjct: 356 DESNIKLSYDSAFFIAQKI-RS 376 >gi|294338441|emb|CAZ86767.1| Chromosomal replication initiator protein dnaA [Thiomonas sp. 3As] Length = 484 Score = 94.4 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 37/234 (15%), Positives = 86/234 (36%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI-----WSD 86 +S + L+ A + A P R + + G G GK+ L + + Sbjct: 150 NPMLSFETLVTGKANQLARAAAIQVAENPGRSYNPLFIYGGVGLGKTHLMHAVGNALLAQ 209 Query: 87 KSRSTRFSNIAKSLDSILIDTR---------------KPVLLEDIDLLDFND---TQLFH 128 + + A+ S ++ +L++D+ D + F+ Sbjct: 210 QPGARIRYLQAEQFVSEVVRAYQRKAFEEFKRYYHSLDLLLIDDVQFFAGKDKTQEEFFY 269 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ S +++T+ T+P L SR + V I P+ + ++++ Sbjct: 270 AFEALITKRSQIILTSDTYPKELREMDQRLVSRFDSGLTVAIEPPELEMRVAILLRKADA 329 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + +++A ++ + + ++ E + K+ A G ++ LA E LK+ Sbjct: 330 ELAHLPEEVAFFVAKNVRSNVRELEGALRKILAYARFSGQDVSIGLAKEALKDL 383 >gi|296134505|ref|YP_003641747.1| chromosomal replication initiator protein DnaA [Thiomonas intermedia K12] gi|295794627|gb|ADG29417.1| chromosomal replication initiator protein DnaA [Thiomonas intermedia K12] Length = 484 Score = 94.4 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 37/234 (15%), Positives = 86/234 (36%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI-----WSD 86 +S + L+ A + A P R + + G G GK+ L + + Sbjct: 150 NPMLSFETLVTGKANQLARAAAIQVAENPGRSYNPLFIYGGVGLGKTHLMHAVGNALLAQ 209 Query: 87 KSRSTRFSNIAKSLDSILIDTR---------------KPVLLEDIDLLDFND---TQLFH 128 + + A+ S ++ +L++D+ D + F+ Sbjct: 210 QPGARIRYLQAEQFVSEVVRAYQRKAFEEFKRYYHSLDLLLIDDVQFFAGKDKTQEEFFY 269 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ S +++T+ T+P L SR + V I P+ + ++++ Sbjct: 270 AFEALITKRSQIILTSDTYPKELREMDQRLVSRFDSGLTVAIEPPELEMRVAILLRKADA 329 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + +++A ++ + + ++ E + K+ A G ++ LA E LK+ Sbjct: 330 ELAHLPEEVAFFVAKNVRSNVRELEGALRKILAYARFSGQDVSIGLAKEALKDL 383 >gi|259502130|ref|ZP_05745032.1| DNA-directed DNA replication initiator protein [Lactobacillus antri DSM 16041] gi|259169943|gb|EEW54438.1| DNA-directed DNA replication initiator protein [Lactobacillus antri DSM 16041] Length = 435 Score = 94.4 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 45/262 (17%), Positives = 95/262 (36%), Gaps = 28/262 (10%) Query: 10 FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS--RVV 67 + + +QK+ +P+ + P + + +V + A + P + Sbjct: 78 YVLTGEQKSPKPQATATPTS-NIPLNPYYNFETFVVGDGNKIANAAALNAAERPGYMNPL 136 Query: 68 ILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTRK- 109 + G G GK+ L S++ + ++I K + + Sbjct: 137 FIYGGVGLGKTHLMEAIGNYMLKINQNARVKYVTSEEFTNDFINSIQKRTTEQFREEYRN 196 Query: 110 --PVLLEDIDLLD---FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLK 163 +L++DI L + F+ N+++ +++T+ P L D L SR Sbjct: 197 LDLLLIDDIQFLADKEGTQIEFFNTFNTLYDQQKQIVLTSDRMPREIP-ELQDRLVSRFM 255 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 V+I+ PD + ++ + I I YI +++ ++ E + K+ A Sbjct: 256 WGMPVEITPPDLETRIAILRSKVEEDHIDIGNDTLNYIAGQIDTNVRELEGALTKVQVYA 315 Query: 224 LSRGMGITRSLAAEVLKETQQC 245 IT LA+ LK+ + Sbjct: 316 DLNNEIITPHLASRALKDFRHS 337 >gi|116493575|ref|YP_805309.1| chromosomal replication initiation protein [Lactobacillus casei ATCC 334] gi|122264962|sp|Q03D55|DNAA_LACC3 RecName: Full=Chromosomal replication initiator protein DnaA gi|116103725|gb|ABJ68867.1| DNA replication ATPase initiation [Lactobacillus casei ATCC 334] Length = 449 Score = 94.4 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 80/239 (33%), Gaps = 28/239 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDKSRST 91 + D ++ + A + P + + G G GK+ L + Sbjct: 112 NPKYTFDHFVIGKGNQMAHAAALAVAEAPGTTYNPLFIYGGVGLGKTHLMQAIGNLVLGN 171 Query: 92 RFSNIAKSLDSILIDTR--------------------KPVLLEDI----DLLDFNDTQLF 127 + K + S +L++DI D + F Sbjct: 172 NPAANIKYVTSENFANDFINSIQTKQQEQFRQEYRNVDLLLVDDIQFFGDKEATQEE-FF 230 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++++ +++T+ P L SR V ++ PD + ++ Sbjct: 231 HTFNTLYENMKQIVLTSDRLPNEIPKLQERLVSRFNKGLSVDVTPPDLETRIAILRNKAD 290 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + I +YI ++E ++ E + ++ + + IT SLAA+ LK + D Sbjct: 291 AEDLSIPDDTLSYIAGQIESNVRDLEGALVRVQAFSTMKNEDITTSLAADALKALKLDD 349 >gi|255020209|ref|ZP_05292278.1| Chromosomal replication initiator protein DnaA [Acidithiobacillus caldus ATCC 51756] gi|254970351|gb|EET27844.1| Chromosomal replication initiator protein DnaA [Acidithiobacillus caldus ATCC 51756] Length = 450 Score = 94.1 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 34/238 (14%), Positives = 78/238 (32%), Gaps = 34/238 (14%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN-----IWSD 86 + + + + A+ P + + + G G GK+ L I Sbjct: 116 NPAFNFQSYVEGKSNQLALAAARQVAQHPGKSYNPLYIYGGVGLGKTHLMQAVGNDILQR 175 Query: 87 KSRS--TRFSNIAKSLDSILIDTRK-------------PVLLEDIDLLDFND---TQLFH 128 + + S+ +D + +L++DI D + FH Sbjct: 176 QPEAKVLYISSEGFIMDMVRSLQHNTINDFKQRYRKLDALLIDDIQFFAGKDRTQEEFFH 235 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++ +++T +P L SR V I D + +++ D Sbjct: 236 TFNALFDGGRQIIITCDRYPKEVEGLEERLQSRFGWGLTVAIQPHDLETRMAIVLCKAED 295 Query: 189 RQIFIDKKLAAYIVQRME---RSLV-FAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 I + +++A +I +++ R L +++ ++ + A E L++ Sbjct: 296 HGIQLPEEVAFFIAEKIRSHVRELEGALRRVIAHVNF----THKPYSVESAKEALRDL 349 >gi|319785621|ref|YP_004145096.1| chromosomal replication initiator protein DnaA [Pseudoxanthomonas suwonensis 11-1] gi|317464133|gb|ADV25865.1| chromosomal replication initiator protein DnaA [Pseudoxanthomonas suwonensis 11-1] Length = 445 Score = 94.1 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 43/244 (17%), Positives = 85/244 (34%), Gaps = 27/244 (11%) Query: 29 FFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 F+ D+ + + A + ++L G +G GK+ L Sbjct: 104 PFNGNLDPHYVFDNFVEGRSNQLGRAAAWQAAQKPGDRAHNPLLLYGGTGLGKTHLMFAA 163 Query: 85 SDKSR-------------STRFSNIAKSLDSILIDT-------RKPVLLEDIDLLDFND- 123 ++ R +S ++L D +L++DI D Sbjct: 164 GNEMRRLNPGARVLYLRSEQFYSAFFRALQEKTADQFKRQFQQIDALLIDDIQFFAGKDR 223 Query: 124 --TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 + FH NS+ ++MT +P P L SRL V I PD + + Sbjct: 224 TQEEFFHTFNSLFDSRQQIIMTCDRYPREVDGLEPRLKSRLAWGLSVAIDPPDFETRAAI 283 Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++ +R + ++A + ++M ++ E ++ + A G I+ A E L++ Sbjct: 284 VLAKARERGTVVPDEVAFLLAKKMRSNVRDLEGALNTLAARANFTGRAISVEFAQETLRD 343 Query: 242 TQQC 245 + Sbjct: 344 LLRA 347 >gi|304392441|ref|ZP_07374382.1| chromosomal replication initiator protein DnaA [Ahrensia sp. R2A130] gi|303295545|gb|EFL89904.1| chromosomal replication initiator protein DnaA [Ahrensia sp. R2A130] Length = 596 Score = 94.1 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 34/219 (15%), Positives = 73/219 (33%), Gaps = 32/219 (14%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS-----RVVILVGPSGSGKSCLANI--WS 85 P + + ++ A S + L G GK+ L W Sbjct: 251 PLDPSFTFATFVEGASNRVACAAARSVAEADGTAARFNPLFLHANVGLGKTHLLQAIAWG 310 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPV----------LLEDIDLLDFNDTQLF-------- 127 +R++ + + + + + L DIDLL +D Q Sbjct: 311 ASARNSGIKILYLTAEYFMWRFASAIRDQSALSFKESLRDIDLLLIDDMQFLQGKSIQQE 370 Query: 128 --HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 H++N++ +++ A P + SRL+ +++ PD + + ++ Sbjct: 371 FCHLLNALIDSAKQVVVAADRPPAQLESLDARVRSRLQGGVALEVGSPDIEMRKAMLELR 430 Query: 186 F--ADR---QIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 + A R + I + Y+ R+ S E +++ Sbjct: 431 YREARREDPNLAIPSDILDYVATRVASSGRDLEGAFNQL 469 >gi|157165209|ref|YP_001465925.1| chromosomal replication initiation protein [Campylobacter concisus 13826] gi|166201870|sp|A7ZAW7|DNAA_CAMC1 RecName: Full=Chromosomal replication initiator protein DnaA gi|112801714|gb|EAT99058.1| chromosomal replication initiator protein DnaA [Campylobacter concisus 13826] Length = 436 Score = 94.1 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 40/232 (17%), Positives = 84/232 (36%), Gaps = 24/232 (10%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDKSRST 91 G + ++ + + + A + P + + G +G GK+ L + Sbjct: 102 NPGYTFENFVCGDSNQFAFLNAKAVADKPGVLYNPLFIYGTTGLGKTHLLQSVGNYCLDQ 161 Query: 92 RFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFHII 130 I + D +ID + L++D+ L D + F+ Sbjct: 162 GKVVICVTSDQFMIDFTTHLNSHSMTKFREKYRNCDVLLIDDVQFLGKTDKIQEEFFNTF 221 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N + ++MT+ L SR + + + I+ P+ D +I+K + Sbjct: 222 NELIAKKGQIVMTSDRPAKILKGFDERLKSRFEQSIMADITPPELDTKIAIIIKKCEFDK 281 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 I+++K++ YI M ++ E + ++ A + IT A LK+ Sbjct: 282 IYLNKEVIDYIATNMGDNIREIEGAIINLNAYASLMRVEITLEFAKNTLKDL 333 >gi|116070875|ref|ZP_01468144.1| chromosomal replication initiation protein [Synechococcus sp. BL107] gi|116066280|gb|EAU72037.1| chromosomal replication initiation protein [Synechococcus sp. BL107] Length = 474 Score = 94.1 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 42/260 (16%), Positives = 84/260 (32%), Gaps = 32/260 (12%) Query: 14 DKQKNDQPKNKEEQ---LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---V 67 ++ + P Q L R +V A + P R + Sbjct: 115 EQPREAAPARPSGQRRYLP-GLNPRYVFGR--FVVGQNSRMAHAAALAVAEAPGREFNPL 171 Query: 68 ILVGPSGSGKSCLANIWSD-----KSRSTRFSNIAKSLDSILIDT--------------- 107 + G G GK+ L + ++ + LI Sbjct: 172 FICGGVGLGKTHLMQAIGHYRLEIDPGARVAYVSTETFTNDLIQAIRKDGMQAFRDRYRA 231 Query: 108 RKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164 +L++DI ++ + + FH N++H+ +++ + P L SR + Sbjct: 232 ADLILVDDIQFIEGKEYTQEEFFHTFNALHEAGRQVVIASDRPPSQIPRLQQRLISRFQM 291 Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 + I PD + ++ K ++ + + L YI R ++ E + + A Sbjct: 292 GLIADIQSPDLETRMAILQKKAEQERMALPRDLIQYIAGRFTSNIRELEGALTRAVAFAS 351 Query: 225 SRGMGITRSLAAEVLKETQQ 244 G+ +T A +L T Q Sbjct: 352 ITGLPMTVESVAPMLDPTGQ 371 >gi|255659821|ref|ZP_05405230.1| ATPase [Mitsuokella multacida DSM 20544] gi|260847896|gb|EEX67903.1| ATPase [Mitsuokella multacida DSM 20544] Length = 490 Score = 94.1 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 36/235 (15%), Positives = 83/235 (35%), Gaps = 28/235 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW------- 84 + + + S+ A + P +V + G G GK+ L + Sbjct: 154 NPKYTFETFVTGSSNRFAHAAAMAVAESPGKVYNPFFMYGGVGLGKTHLMHAIGNRVLQN 213 Query: 85 ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDF---NDTQLFH 128 S++ + I + + + + +++DI L + F+ Sbjct: 214 HPEMRVLYVSSEQFTNEIIRAIQEGKAELFRQKYRTIDVLMVDDIQFLSGKQSTQEEFFN 273 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 N++H D +++++ P L D L SR + + I PD + ++ Sbjct: 274 TFNALHVADKQIILSSDRPPREVQ-KLEDRLRSRFEGGLITDIQAPDLETRIAILKNKAL 332 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + +I R++ ++ E + ++ A +T + AE LK+ Sbjct: 333 LDHVDVPNDVLMFIANRIDSNIRELEGALTRVVAYASLINKPVTTDVVAEALKDV 387 >gi|183602668|ref|ZP_02964032.1| chromosomal replication initiator protein DnaA [Bifidobacterium animalis subsp. lactis HN019] gi|219682500|ref|YP_002468883.1| chromosomal replication initiator protein DnaA [Bifidobacterium animalis subsp. lactis AD011] gi|241190067|ref|YP_002967461.1| ATPase for DNA replication initiation [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195473|ref|YP_002969028.1| ATPase for DNA replication initiation [Bifidobacterium animalis subsp. lactis DSM 10140] gi|254777887|sp|B8DV06|DNAA_BIFA0 RecName: Full=Chromosomal replication initiator protein DnaA gi|183218086|gb|EDT88733.1| chromosomal replication initiator protein DnaA [Bifidobacterium animalis subsp. lactis HN019] gi|219620150|gb|ACL28307.1| chromosomal replication initiator protein DnaA [Bifidobacterium animalis subsp. lactis AD011] gi|240248459|gb|ACS45399.1| ATPase for DNA replication initiation [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250027|gb|ACS46966.1| ATPase for DNA replication initiation [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793054|gb|ADG32589.1| ATPase for DNA replication initiation [Bifidobacterium animalis subsp. lactis V9] Length = 583 Score = 94.1 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 36/236 (15%), Positives = 84/236 (35%), Gaps = 34/236 (14%) Query: 40 RDDLLVHSAIEQAVRLIDSWPSWPSR---VVILVGPSGSGKSCLANI---WSDKSRSTRF 93 D + + A + + R + + G SG GK+ L + ++ +++ R Sbjct: 243 FDTFIQGDSNRFARTVALAVAEGSGRDYNPLCIYGGSGLGKTHLLHAIGNYAVQNQKPRP 302 Query: 94 SNIAKSLDSILIDTRKPV-------------------------LLEDIDLLDFND---TQ 125 + + + D + + L++DI L Q Sbjct: 303 RVLYVTSEEFTNDFIESIRTSGQDNEDPAMEKFYRKYREVDVLLIDDIQFLGGKRGILEQ 362 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 FH NS++Q + +++ + P + L SR + V + P+ + ++ + Sbjct: 363 FFHTFNSLYQANKRIVIASDVPPHNLEDFEDRLISRFEQGITVDVKPPNLETRIAILRML 422 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 I + + I +R ++ E + ++ +A +TR+L L++ Sbjct: 423 AEQNHIRVPNDVLNLIAERFANNVRELEGALKRVIAMASLNHQPVTRALTERTLQD 478 >gi|319746185|gb|EFV98455.1| DNA-directed DNA replication initiator protein [Streptococcus agalactiae ATCC 13813] Length = 469 Score = 94.1 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 34/239 (14%), Positives = 77/239 (32%), Gaps = 29/239 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDKS--- 88 + + + AV + P + + G G GK+ L N ++ Sbjct: 131 KEKYTFANFVQGDENRWAVSASIAVADSPGTTYNPLFIWGGPGLGKTHLLNAIGNQVLRD 190 Query: 89 --RSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLLD-----FNDTQL 126 + A++ + + +L++DI L + Sbjct: 191 NPNARVLYITAENFINEFVSHIRLDSMEELKEKFRNLDLLLIDDIQSLAKKTLGGTQEEF 250 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 F+ N++H D +++T+ P L +R V I+ PD + ++ Sbjct: 251 FNTFNALHTNDKQIVLTSDRNPNQLNDLEERLVTRFSWGLPVNITPPDFETRVAILTNKI 310 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA-LSRGMGITRSLAAEVLKETQQ 244 + + Y+ + ++ E + + +A IT +AAE ++ + Sbjct: 311 QEYPYDFPQDTIEYLAGEFDSNVRELEGALKNISLVADFKHAKTITVDIAAEAIRARKN 369 >gi|293374955|ref|ZP_06621251.1| chromosomal replication initiator protein DnaA [Turicibacter sanguinis PC909] gi|325844340|ref|ZP_08168116.1| chromosomal replication initiator protein DnaA [Turicibacter sp. HGF1] gi|292646432|gb|EFF64446.1| chromosomal replication initiator protein DnaA [Turicibacter sanguinis PC909] gi|325489207|gb|EGC91589.1| chromosomal replication initiator protein DnaA [Turicibacter sp. HGF1] Length = 448 Score = 94.1 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 44/282 (15%), Positives = 92/282 (32%), Gaps = 44/282 (15%) Query: 1 MNLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFP------RCLGISRDDLLVHSAIEQAVR 54 + + DY D+Q D K + P + D + + A Sbjct: 77 VKFITNDY--VKNDQQAFDLTKPDP-----NLPKYYRGNLNTTYTFDRFVAGKSNRLAYM 129 Query: 55 LIDSWPSWPSRV---VILVGPSGSGKSCLANI---------------------WSDKSRS 90 + P V + + G G GK+ L + D R Sbjct: 130 IALQVAERPGEVANPLYIFGGVGLGKTHLMQAIGNFILDDNPSSRILYCTSEKFIDDYRH 189 Query: 91 TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTF 147 N ++ +L++DI L + T+ F+ N ++ + +++T+ Sbjct: 190 ATLDNNFEAFKEKY-RNIDVLLIDDIQFLSKKEQTQTEFFNTFNELYNNNKQIVITSDRP 248 Query: 148 PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI---DKKLAAYIVQR 204 + L SR + I +PD +++ K A I + +++ +I + Sbjct: 249 ASDLKDIMDRLTSRFEWGLQADIQIPDTQTRIEIMKKKLAGENINLDEFPEEVLEFIASK 308 Query: 205 MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 ++ E + ++ A T LA E L++ + + Sbjct: 309 FNSNVRTLEGALKRLIFYATINNSDFTIELANEALRDLFKAE 350 >gi|22536186|ref|NP_687037.1| chromosomal replication initiation protein [Streptococcus agalactiae 2603V/R] gi|25010076|ref|NP_734471.1| chromosomal replication initiation protein [Streptococcus agalactiae NEM316] gi|76787564|ref|YP_328728.1| chromosomal replication initiation protein [Streptococcus agalactiae A909] gi|76797986|ref|ZP_00780245.1| chromosomal replication initiator protein DnaA [Streptococcus agalactiae 18RS21] gi|77405627|ref|ZP_00782716.1| chromosomal replication initiator protein DnaA [Streptococcus agalactiae H36B] gi|77407687|ref|ZP_00784442.1| chromosomal replication initiator protein DnaA [Streptococcus agalactiae COH1] gi|77411769|ref|ZP_00788105.1| chromosomal replication initiator protein DnaA [Streptococcus agalactiae CJB111] gi|77413657|ref|ZP_00789842.1| chromosomal replication initiator protein DnaA [Streptococcus agalactiae 515] gi|61212814|sp|Q8E2I7|DNAA_STRA5 RecName: Full=Chromosomal replication initiator protein DnaA gi|61212815|sp|Q8E7Z4|DNAA_STRA3 RecName: Full=Chromosomal replication initiator protein DnaA gi|123744534|sp|Q3K425|DNAA_STRA1 RecName: Full=Chromosomal replication initiator protein DnaA gi|22533003|gb|AAM98909.1|AE014191_1 chromosomal replication initiator protein DnaA [Streptococcus agalactiae 2603V/R] gi|23094427|emb|CAD45646.1| replication initiation protein DnaA [Streptococcus agalactiae NEM316] gi|76562621|gb|ABA45205.1| chromosomal replication initiator protein DnaA [Streptococcus agalactiae A909] gi|76586666|gb|EAO63165.1| chromosomal replication initiator protein DnaA [Streptococcus agalactiae 18RS21] gi|77160312|gb|EAO71438.1| chromosomal replication initiator protein DnaA [Streptococcus agalactiae 515] gi|77162160|gb|EAO73135.1| chromosomal replication initiator protein DnaA [Streptococcus agalactiae CJB111] gi|77173686|gb|EAO76800.1| chromosomal replication initiator protein DnaA [Streptococcus agalactiae COH1] gi|77175771|gb|EAO78551.1| chromosomal replication initiator protein DnaA [Streptococcus agalactiae H36B] Length = 453 Score = 94.1 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 34/239 (14%), Positives = 77/239 (32%), Gaps = 29/239 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDKS--- 88 + + + AV + P + + G G GK+ L N ++ Sbjct: 115 KEKYTFANFVQGDENRWAVSASIAVADSPGTTYNPLFIWGGPGLGKTHLLNAIGNQVLRD 174 Query: 89 --RSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLLD-----FNDTQL 126 + A++ + + +L++DI L + Sbjct: 175 NPNARVLYITAENFINEFVSHIRLDSMEELKEKFRNLDLLLIDDIQSLAKKTLGGTQEEF 234 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 F+ N++H D +++T+ P L +R V I+ PD + ++ Sbjct: 235 FNTFNALHTNDKQIVLTSDRNPNQLNDLEERLVTRFSWGLPVNITPPDFETRVAILTNKI 294 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA-LSRGMGITRSLAAEVLKETQQ 244 + + Y+ + ++ E + + +A IT +AAE ++ + Sbjct: 295 QEYPYDFPQDTIEYLAGEFDSNVRELEGALKNISLVADFKHAKTITVDIAAEAIRARKN 353 >gi|42525520|ref|NP_970618.1| chromosomal replication initiation protein [Treponema denticola ATCC 35405] gi|14194665|sp|O87546|DNAA_TREDE RecName: Full=Chromosomal replication initiator protein DnaA gi|3676692|gb|AAC62071.1| chromosomal replication initiator protein [Treponema denticola] gi|41815531|gb|AAS10499.1| chromosomal replication initiator protein DnaA [Treponema denticola ATCC 35405] Length = 469 Score = 94.1 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 36/274 (13%), Positives = 79/274 (28%), Gaps = 49/274 (17%) Query: 15 KQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVG 71 K+K+ + + Q + +D +V A + + P ++ G Sbjct: 114 KKKSVKTEGGRGQHP-DL--RPEYNFEDFVVGPNNNFGVNAAIAVSTNPGSAYNPFLIYG 170 Query: 72 PSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSIL--------------IDTRKPVL 112 G GK+ L IW + + + +L Sbjct: 171 GVGLGKTHLMQAIGNKIWDTTKLKVIYVTAENFTNEFVECVQKKMMPAFKSKYRKADVLL 230 Query: 113 LEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 ++DI +LFH N +++ + ++ T P L SR + V Sbjct: 231 IDDIHFFQGKVETQEELFHTFNELYEKNKQIVFTCDRPPAELKNLSQRLKSRFERGLNVD 290 Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM---------- 219 + P + +++K I + + + + ++ E + K+ Sbjct: 291 LQTPAYEIRYAILLKKMEKHSTKIPNEFIDMVAKNVSSNVRDLEAALTKLIAYTELTKKT 350 Query: 220 -----------DNLALSRGMGITRSLAAEVLKET 242 D +R +T L + + Sbjct: 351 MDEATAKNLLRDIFGSTRQRNVTIDLIQRTVADY 384 >gi|325475359|gb|EGC78544.1| chromosomal replication initiator protein dnaA [Treponema denticola F0402] Length = 469 Score = 94.1 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 34/252 (13%), Positives = 78/252 (30%), Gaps = 28/252 (11%) Query: 15 KQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVG 71 K+K+ + + Q + +D +V A + + P ++ G Sbjct: 114 KKKSVKTEGGRGQHP-DL--RPEYNFEDFVVGPNNNFGVNAAIAVSTNPGSAYNPFLIYG 170 Query: 72 PSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSIL--------------IDTRKPVL 112 G GK+ L IW + + + +L Sbjct: 171 GVGLGKTHLMQAIGNKIWDTTKLKVIYVTAENFTNEFVECVQKKMMPAFKSKYRKADVLL 230 Query: 113 LEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 ++DI +LFH N +++ + ++ T P L SR + V Sbjct: 231 IDDIHFFQGKVETQEELFHTFNELYEKNKQIVFTCDRPPAELKNLSQRLKSRFERGLNVD 290 Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229 + P + +++K I + + + + ++ E + K+ Sbjct: 291 LQTPAYEIRYAILLKKMEKHSTKIPNEFIDMVAKNVSSNVRDLEAALTKLIAYTELTKKT 350 Query: 230 ITRSLAAEVLKE 241 + + A +L++ Sbjct: 351 MDEATAKNLLRD 362 >gi|319760739|ref|YP_004124676.1| chromosomal replication initiator protein dnaa [Alicycliphilus denitrificans BC] gi|317115300|gb|ADU97788.1| chromosomal replication initiator protein DnaA [Alicycliphilus denitrificans BC] Length = 473 Score = 94.1 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 37/232 (15%), Positives = 88/232 (37%), Gaps = 26/232 (11%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI-----WSDKS 88 ++ D L+ +A A P + + + G G GK+ L + +D+ Sbjct: 141 ALTFDTLVEGTANRMARSAAMHVAGSPGHLYNPLFIYGGVGLGKTHLVHAVGNKLLADRP 200 Query: 89 RSTRFSNIAKSLDSILIDTRKPVLLED-------IDLLDFND-----------TQLFHII 130 + A+ S ++ + + +D +DLL +D + F+ Sbjct: 201 DAKVLYIHAEQFVSDVVKSYQRRTFDDFKERYHSLDLLLIDDVQFFANKDRTQEEFFNAF 260 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 ++ S ++MT+ T+P L SR + V I P+ + +++ Sbjct: 261 EALLAKKSHIVMTSDTYPKGLANIHERLVSRFDSGLTVAIEPPELEMRVAILINKARAEH 320 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + +++A ++ + + ++ E + K+ + ++ LA E L++ Sbjct: 321 AEMPEEVAFFVAKNVRSNVRELEGALRKILAYSRFNQKEVSIQLAREALRDL 372 >gi|295398135|ref|ZP_06808184.1| DNA-directed DNA replication initiator protein [Aerococcus viridans ATCC 11563] gi|294973654|gb|EFG49432.1| DNA-directed DNA replication initiator protein [Aerococcus viridans ATCC 11563] Length = 444 Score = 94.1 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 36/235 (15%), Positives = 81/235 (34%), Gaps = 28/235 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSR---VVILVGPSGSGKSCLANIWSDKS--- 88 + D+ +V + A + P R + G G GK+ L + Sbjct: 109 NPKYTFDNFVVGEGNKMAHAAALAVAEGPGRDYNPLFFFGGVGLGKTHLMQAIGHEVLRT 168 Query: 89 --RSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLD---FNDTQLFH 128 + +++ + I+ + +L++DI + + FH Sbjct: 169 NPNAKIKYVSSETFTNDFINAIRKNTTDAFHQEYRTVDMLLVDDIQFIGNKQSTQEEFFH 228 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 N ++ + +++T+ L D L SR K I+ PD + ++ Sbjct: 229 TFNVLYNNNKHIVLTSDRDASQIP-ELEDRLVSRFKQGLSTDITPPDLETRIAILRNKAN 287 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I +YI +++ ++ E + + A+ +T + AA+ L+ Sbjct: 288 VNGLQIPDDTLSYIAGQIDSNIRELEGALTSVQAFAVMNQEDLTPNTAAKALRNY 342 >gi|300021540|ref|YP_003754151.1| chromosomal replication initiator protein DnaA [Hyphomicrobium denitrificans ATCC 51888] gi|299523361|gb|ADJ21830.1| chromosomal replication initiator protein DnaA [Hyphomicrobium denitrificans ATCC 51888] Length = 506 Score = 94.1 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 38/248 (15%), Positives = 83/248 (33%), Gaps = 39/248 (15%) Query: 33 PRCLGISRDDLLVHSAIEQAVR---------LIDSWPSWPSRVVILVGPSGSGKSCLANI 83 P + D +V ++ A L D+ P + + G GKS L Sbjct: 162 PLDPRYTFDSFVVGASNRMAHAGATQVAETVLTDAPGYNP---LYIHSAVGLGKSHLLQA 218 Query: 84 WS-----DKSRSTRFSNIAKSLDSILIDTRKP---------------VLLEDIDLLDFN- 122 + + A+ ++ + +L++D++ L Sbjct: 219 IAWEVKRRAPSAQVLYLTAERFRYQFVEALRSSDPLAFKERFRNIHMLLIDDLEFLQGER 278 Query: 123 -DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 + + HIIN++ +++ + P + SRL+ V ++ D + KV Sbjct: 279 TEQEFDHIINALLDGGKQVVVASARAPNQIERLNERMRSRLQRGLVTELIPLDHELRLKV 338 Query: 182 I-----VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236 + K AD + + + + R+ + E + ++ IT +A Sbjct: 339 LEKRLGEKRAADPSFTLSRDVVDLLAMRLTENGRELEGAITRLYATWQYMRTPITLDIAE 398 Query: 237 EVLKETQQ 244 V+++ Q Sbjct: 399 TVIRDLVQ 406 >gi|61212565|sp|Q6ARL8|DNAA_DESPS RecName: Full=Chromosomal replication initiator protein DnaA Length = 479 Score = 94.1 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 40/238 (16%), Positives = 88/238 (36%), Gaps = 27/238 (11%) Query: 36 LGISRDDLLVHSAI---EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN---------- 82 + D+ +V + E A R I + + + +G GKS L + Sbjct: 146 PRYTFDEFMVGQSNILAESACRAISADADTVGPCLYINSGTGLGKSHLTHAVAHHLLSNS 205 Query: 83 -------IWSDKSRSTRFSNIAKSLDSIL----IDTRKPVLLEDIDLLDF---NDTQLFH 128 + + + + I + + + +L+EDI L +L Sbjct: 206 PMTRMHYVTAQQFSAEMVHGIKNNSMDMFKKKYQEDCDILLVEDIHTLKGKKKTQEELNE 265 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 +++++ + +L+TA P + SR+ A + I PD +++ + A Sbjct: 266 VLDTLVKSGKRVLLTANAAPRELAGIDGEFRSRMSAGLITSIQAPDIKTRSRIVERKAAG 325 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 +++ D+ + +Y+ Q + + E + + A G I +L EV+ C+ Sbjct: 326 QRLSFDEDMTSYLAQNVRGDVRQIESAITAIGARARLMGGYIDMNLIREVVGSVVGCN 383 >gi|118602061|ref|YP_903276.1| chromosomal replication initiator protein DnaA [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567000|gb|ABL01805.1| chromosomal replication initiator protein DnaA [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 430 Score = 94.1 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 39/216 (18%), Positives = 84/216 (38%), Gaps = 29/216 (13%) Query: 33 PRCLGISRDDLLVHSAIEQAV----RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS 88 P + D+L++ +A + A ++ ++ + P I+ G SG GK+ L S Sbjct: 87 PLFEDYTFDNLILGNANQMAYGATKQIAENIKTSPYNPFIIYGGSGLGKTHLMQAAGHLS 146 Query: 89 RSTR-------------FSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQ 125 + NI SL I+ + +L++DI L+ + + Sbjct: 147 KEKNQNIKVIYVPLMDFVRNITSSLRHNTIENIKTFYQSADLLLVDDIHLIAGKEKSQEE 206 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 FHI N + ++ T P + L +R + ++ P+ + +++K Sbjct: 207 FFHIFNFLFNGKKQIIFTCDQSPKNIKSLENRLKTRFSQGLNLHLTPPELEMRAAILLKK 266 Query: 186 FADRQIFI--DKKLAAYIVQRMERSLVFAEKLVDKM 219 +++I I + A +I + ++ E + K+ Sbjct: 267 SQNKRININLTEDTALFIATHIASNVRDLEGALLKL 302 >gi|332186224|ref|ZP_08387969.1| chromosomal replication initiator protein DnaA [Sphingomonas sp. S17] gi|332013592|gb|EGI55652.1| chromosomal replication initiator protein DnaA [Sphingomonas sp. S17] Length = 519 Score = 93.7 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 45/243 (18%), Positives = 87/243 (35%), Gaps = 31/243 (12%) Query: 33 PRCLGISRDDLLVHSAIEQAV--RLIDSWPSWP-SRVVILVGPSGSGKSCLANIWSDKS- 88 P ++ D +V S+ A L + P P + L G +G GK+ L + + Sbjct: 182 PLDPRLTFDRFVVDSSNRVAFNAALSLAEPGLPRFSPLFLHGGTGQGKTHLMHAIAHAFL 241 Query: 89 ----RSTRFSNIAKSLDSILIDTRKP---------------VLLEDIDLLDFND---TQL 126 + A+ + + +L++D+ + D + Sbjct: 242 ESHPEAVVLCMSAERFMFDFVAAMRARDTHSFKTRLRSADLLLIDDLQFIAGKDSTQEEF 301 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH +N + L+++A P S P + RL A V I PD ++ + Sbjct: 302 FHTVNELVSAGKRLVISADRSPQSLDGMEPRIIGRLGAGLVADIKAPDLTLRRTILNRKV 361 Query: 187 AD-RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA----EVLKE 241 +D I + + + R+ ++ E ++++ A G I A EVL+ Sbjct: 362 SDLPDIVVPNDVLDLLASRIRGNIRELEGALNRVVAYAQLTGEKIDLEFAVATLGEVLRG 421 Query: 242 TQQ 244 Q+ Sbjct: 422 AQR 424 >gi|262281645|ref|ZP_06059414.1| chromosomal replication initiator protein DnaA [Streptococcus sp. 2_1_36FAA] gi|262262099|gb|EEY80796.1| chromosomal replication initiator protein DnaA [Streptococcus sp. 2_1_36FAA] Length = 450 Score = 93.7 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 38/280 (13%), Positives = 95/280 (33%), Gaps = 40/280 (14%) Query: 4 MKEDYSFFVPDKQKNDQPKNKEEQL---------FFSFPRCLGISRDDLLVHSAIEQAVR 54 + Y F D+ K + +Q + + ++ + + A Sbjct: 74 ITALYVFETEDRVKEEPVYLTSQQPDLTEKKKSPPLATGLKAKYTFENFVQGDGNQWAKA 133 Query: 55 LIDSWPS---WPSRVVILVGPSGSGKSCLANIWSDKS-----RSTRFSNIAKSLDSILID 106 + + + G G GK+ L N ++ + A++ + ++ Sbjct: 134 AALAVADNLGGIYNPLFIYGGPGLGKTHLLNAIGNEVLENTPDARIKYVPAETFINDFLE 193 Query: 107 ---------------TRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFP 148 + +L++DI L + F+ N++H + +++T+ P Sbjct: 194 HLRLGEMDSFKKIYRSLDLLLIDDIQALSKKVSTQEEFFNTFNALHGENKQIVLTSDRSP 253 Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME-- 206 L +R K I+ P+ + ++ + + + Y+ + + Sbjct: 254 DYLENLEERLVTRFKWGLTSDITPPNFETRIAILRNKIEEFDLIFPNETIEYLAGQFDSN 313 Query: 207 -RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 R L A K ++ + ++ + IT +AAE ++ +Q Sbjct: 314 VRDLEGALKDINLL--ASMKQIKEITIDIAAEAIRSRKQA 351 >gi|148239038|ref|YP_001224425.1| chromosomal replication initiation protein [Synechococcus sp. WH 7803] gi|166215365|sp|A5GJL3|DNAA_SYNPW RecName: Full=Chromosomal replication initiator protein DnaA gi|147847577|emb|CAK23128.1| Chromosomal replication initiator protein dnaA [Synechococcus sp. WH 7803] Length = 464 Score = 93.7 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 78/228 (34%), Gaps = 26/228 (11%) Query: 43 LLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD-------KSRSTR 92 +V A + P R + + G G GK+ L ++R Sbjct: 134 FVVGPNSRMAHAAALAVAEAPGREFNPLFICGGVGLGKTHLMQAIGHYRLEIDPEARVFY 193 Query: 93 FSNIAKSLDSILI-------------DTRKPVLLEDIDLLDFND---TQLFHIINSIHQY 136 S + D I+ +L++DI ++ + + FH N++H+ Sbjct: 194 VSTETFTNDLIVAIRRDGMQAFRDRYRAADLILVDDIQFIEGKEYTQEEFFHTFNALHEA 253 Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196 +++ + P L SR + I PD + ++ K ++ + + Sbjct: 254 GRQIVIASDRPPSQIPRLQERLISRFSMGLIADIQAPDLETRMAILQKKAEQERVALPRD 313 Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 L YI R ++ E + + A GM +T A +L + Q Sbjct: 314 LIQYISGRFTSNIRELEGALTRAVAFASITGMPMTVESVAPMLDPSGQ 361 >gi|158422638|ref|YP_001523930.1| chromosomal replication initiation protein [Azorhizobium caulinodans ORS 571] gi|158329527|dbj|BAF87012.1| chromosomal replication initiator protein [Azorhizobium caulinodans ORS 571] Length = 444 Score = 93.7 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 34/244 (13%), Positives = 85/244 (34%), Gaps = 31/244 (12%) Query: 33 PRCLGISRDDLLVHSAI----EQAVRLIDSWPSWP--SRVVILVGPSGSGKSCLANI--W 84 P ++ + +V + A ++ ++ P + + G GK+ L W Sbjct: 102 PLDARLTFETFVVGKSNTLAHAAARQVAEAVPGAAPLFNPLYMHAAVGLGKTHLLQAVAW 161 Query: 85 SDKSRSTRFSNIAKSLD----SILIDTRKPVLLED----IDLLDFNDTQLF--------- 127 + +R R + + + + +D ID L +D Q Sbjct: 162 AGAARGRRVVYLTAERFMYGFVAALKSHAAIAFKDALRSIDTLVIDDLQFLTGKNMQQEF 221 Query: 128 -HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 H +N++ +++ A P + SRL VV+++ ++D +++ Sbjct: 222 CHTLNALMDAGRQVVVAADRPPSELDALDDRVRSRLAGGLVVELAPLEEDLRAQILKTRS 281 Query: 187 -----ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 R + + ++ + + S + ++K+ + G +T +A +K+ Sbjct: 282 VSLSEQHRGFAVPSAVLEFLARHVGTSGRDLDGALNKLLAVNKLTGEPVTLEMAETAVKD 341 Query: 242 TQQC 245 + Sbjct: 342 LVRP 345 >gi|315497052|ref|YP_004085856.1| chromosomal replication initiator protein dnaa [Asticcacaulis excentricus CB 48] gi|315415064|gb|ADU11705.1| chromosomal replication initiator protein DnaA [Asticcacaulis excentricus CB 48] Length = 473 Score = 93.7 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 36/238 (15%), Positives = 84/238 (35%), Gaps = 32/238 (13%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91 ++ + + E A + + +W V GP G GK+ L N + ++++ Sbjct: 132 QERLTFETFVPGRGNEFAYTMSRQVATWADGHFNPVFFHGPYGYGKTHLLNAIAWEAKAR 191 Query: 92 RFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDF---NDTQLFH 128 R L + + + +L++D+ + + +LFH Sbjct: 192 RQDAKVVYLTAEKFTSTFVKSLQDRSTAAFKDELRSADLLLIDDVHFIGGKTSSQEELFH 251 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK---- 184 + ++ + + ++ TA P L S L + V + + D +I + Sbjct: 252 TLTALLENNKRVVFTADRPPSHLNEIEARLRSHLSSGLVCALDVADQSLRMGIIERKLDQ 311 Query: 185 MFADRQIF--IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + + ++ R+ S+ E V+ + A +R +T A +L+ Sbjct: 312 LAKRLGVAQKPQHDVLQFLADRVPGSIRELEGAVNTLAASAGARLGSLTLDEAMALLQ 369 >gi|124516518|gb|EAY58026.1| Chromosomal replication initiator protein (DnaA) [Leptospirillum rubarum] gi|206603405|gb|EDZ39885.1| Chromosomal replication initiator protein (DnaA) ORIGIN [Leptospirillum sp. Group II '5-way CG'] Length = 465 Score = 93.7 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 85/235 (36%), Gaps = 26/235 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91 ++ +V + A + + PS+ L G G GK+ L + + + Sbjct: 129 NPRYFFENYVVGVCNQFAHAAAFAIANNPSKAYNPFYLFGSVGLGKTHLVSAIGNCMIAL 188 Query: 92 R--FSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFH 128 + + +S L + + +++D+ L + +LF+ Sbjct: 189 YPSLKVLYITTESFLNEMVSAIKFNKMNEFRERYRKIDVLIMDDVQFLSGKERTQEELFY 248 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++++ +++++ P L SR + I +PD + +++ A Sbjct: 249 TFNALYENGKQIILSSDCMPNDIPTLEGRLKSRFGWGLIADIQIPDFETKVEILKGKMAQ 308 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 ++ + + ++ ++ ++ E + ++ G IT +A +L + Sbjct: 309 EKVDLPMDVVYFLANSIKSNIRELEGAMIRLGAYGNLMGKPITIEVARNLLSDLM 363 >gi|329942717|ref|ZP_08291496.1| chromosomal replication initiator protein DnaA [Chlamydophila psittaci Cal10] gi|332287313|ref|YP_004422214.1| chromosomal replication initiator protein [Chlamydophila psittaci 6BC] gi|313847897|emb|CBY16892.1| chromosomal replication initiator protein [Chlamydophila psittaci RD1] gi|325506504|gb|ADZ18142.1| chromosomal replication initiator protein [Chlamydophila psittaci 6BC] gi|328814977|gb|EGF84966.1| chromosomal replication initiator protein DnaA [Chlamydophila psittaci Cal10] gi|328914557|gb|AEB55390.1| chromosomal replication initiator protein DnaA [Chlamydophila psittaci 6BC] Length = 450 Score = 93.7 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 42/260 (16%), Positives = 93/260 (35%), Gaps = 35/260 (13%) Query: 13 PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQ---AVRLIDSWPSWPSRVVIL 69 P +Q+ + EE F D+ + + + A I P + + Sbjct: 95 PREQQETPTETFEESKDFELKLNTAYRFDNFIEGPSNQFVKSAAVGIAGRPGRSYNPLFI 154 Query: 70 VGPSGSGKSCLANIWSDKSRSTR-------------FSNIAKSLDSILID-------TRK 109 G G GK+ L + R +++ + L ID + Sbjct: 155 HGGVGLGKTHLLHAVGHYVREHHKNLRVHCITTEAFINDLVQHLRLKSIDKMKNFYRSLD 214 Query: 110 PVLLEDI----DLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 +L++DI + +F + +IN + +++T+ P + + +R+ Sbjct: 215 LLLVDDIQFLQNRQNFEEEFCNTFETLINL----NKQIVITSDKPPGQLKLS-ERIIARM 269 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 + V + +PD + ++ + + I ++A YI + ++ E ++K+ Sbjct: 270 EWGLVAHVGIPDLETRVAILQHKAEQKGLHIPNEIAFYIADHIYGNVRQLEGAINKLTAY 329 Query: 223 ALSRGMGITRSLAAEVLKET 242 G +T S+ + LKE Sbjct: 330 CRLFGKTLTESIVRDTLKEL 349 >gi|260890880|ref|ZP_05902143.1| DNA replication initiator protein, ATPase [Leptotrichia hofstadii F0254] gi|260859433|gb|EEX73933.1| DNA replication initiator protein, ATPase [Leptotrichia hofstadii F0254] Length = 451 Score = 93.7 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 42/242 (17%), Positives = 80/242 (33%), Gaps = 31/242 (12%) Query: 29 FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWS 85 F D+ +V + A + + P+ V + + G SG GK+ L Sbjct: 103 VFHTGLNPKHRLDNFVVGENSKLAYNACLAVVNNPTPVYNPLFIYGSSGLGKTHLMQAVG 162 Query: 86 DK------SRSTRFSNIAKSLDSIL--------------IDTRKPVLLEDID-------- 117 + S+ +S + + +LL+DI Sbjct: 163 NAILENNPSKRVYYSTSEEFSNEFFKVLNSGRIQHFRDTFRALDVLLLDDIQFFEKVFGR 222 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 + + FH N + + ++M + P L SR + V+I P + Sbjct: 223 GEGTVEEEFFHTFNKLQELGKQIIMISDKSPKEIKNLSKRLESRFLSGLTVEIQSPGYET 282 Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237 ++ M + I ID + YI ++ ++ E + ++ A IT L E Sbjct: 283 RMMILKNMAKTQGIEIDDSILEYISDSLDTNVRELEGTLTNLNARAKLLNEQITMQLVQE 342 Query: 238 VL 239 +L Sbjct: 343 ML 344 >gi|206603335|gb|EDZ39815.1| Chromosomal replication initiator protein (DnaA) ORIGIN [Leptospirillum sp. Group II '5-way CG'] Length = 465 Score = 93.7 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 85/235 (36%), Gaps = 26/235 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91 ++ +V + A + + PS+ L G G GK+ L + + + Sbjct: 129 NPRYFFENYVVGVCNQFAHAAAFAIANNPSKAYNPFYLFGSVGLGKTHLVSAIGNCMVAL 188 Query: 92 R--FSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFH 128 + + +S L + + +++D+ L + +LF+ Sbjct: 189 YPSLKVLYITTESFLNEMVSAIKFNKMNEFRERYRKIDVLIMDDVQFLSGKERTQEELFY 248 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++++ +++++ P L SR + I +PD + +++ A Sbjct: 249 TFNALYENGKQIILSSDCMPNDIPTLEGRLKSRFGWGLIADIQIPDFETKVEILKGKMAQ 308 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 ++ + + ++ ++ ++ E + ++ G IT +A +L + Sbjct: 309 EKVDLPMDVVYFLANSIKSNIRELEGAMIRLGAYGNLMGKPITIEVARNLLSDLM 363 >gi|227533506|ref|ZP_03963555.1| DNA-directed DNA replication initiator protein [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239630805|ref|ZP_04673836.1| DNA replication ATPase initiation [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301065126|ref|YP_003787149.1| DNA replication ATPase initiation [Lactobacillus casei str. Zhang] gi|227188835|gb|EEI68902.1| DNA-directed DNA replication initiator protein [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239527088|gb|EEQ66089.1| DNA replication ATPase initiation [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300437533|gb|ADK17299.1| DNA replication ATPase initiation [Lactobacillus casei str. Zhang] Length = 449 Score = 93.7 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 80/239 (33%), Gaps = 28/239 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDKSRST 91 + D ++ + A + P + + G G GK+ L + Sbjct: 112 NPKYTFDRFVIGKGNQMAHAAALAVAEAPGTTYNPLFIYGGVGLGKTHLMQAIGNLVLGN 171 Query: 92 RFSNIAKSLDSILIDTR--------------------KPVLLEDI----DLLDFNDTQLF 127 + K + S +L++DI D + F Sbjct: 172 NPAANIKYVTSENFANDFINSIQTKQQEQFRQEYRNVDLLLVDDIQFFGDKEATQEE-FF 230 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++++ +++T+ P L SR V ++ PD + ++ Sbjct: 231 HTFNTLYENMKQIVLTSDRLPNEIPKLQERLVSRFNKGLSVDVTPPDLETRIAILRNKAD 290 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + I +YI ++E ++ E + ++ + + IT SLAA+ LK + D Sbjct: 291 AEDLSIPDDTLSYIAGQIESNVRDLEGALVRVQAFSTMKNEDITTSLAADALKALKLDD 349 >gi|89898446|ref|YP_515556.1| chromosomal replication initiation protein [Chlamydophila felis Fe/C-56] gi|89331818|dbj|BAE81411.1| chromosomal replication initiator protein [Chlamydophila felis Fe/C-56] Length = 450 Score = 93.7 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 41/262 (15%), Positives = 92/262 (35%), Gaps = 35/262 (13%) Query: 11 FVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQ---AVRLIDSWPSWPSRVV 67 P +QK + E F D+ + + + A I P + Sbjct: 93 VAPREQKESPAETFEGSKDFELKLNTAYRFDNFIEGPSNQFVKSAAVGIAGRPGRSYNPL 152 Query: 68 ILVGPSGSGKSCLANIWSD-------------KSRSTRFSNIAKSLDSILID-------T 107 + G G GK+ L + + +++ + L ID + Sbjct: 153 FIHGGVGLGKTHLLHAVGHYVKEHHKNLRVHCITTEAFINDLVQHLRLKSIDKMKNFYRS 212 Query: 108 RKPVLLEDI----DLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 +L++DI + +F + +IN + +++T+ P + + + Sbjct: 213 LDLLLVDDIQFLQNRQNFEEEFCNTFETLINL----NKQIVITSDKPPGQLKLS-ERIIA 267 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 R++ V + +PD + ++ + + I ++A YI + ++ E ++K+ Sbjct: 268 RMEWGLVAHVGIPDLETRVAILQHKAEQKGLHIPNEIAFYIADHIYGNVRQLEGAINKLT 327 Query: 221 NLALSRGMGITRSLAAEVLKET 242 G +T S+ + LKE Sbjct: 328 AYCRLFGKTLTESIVRDTLKEL 349 >gi|317969547|ref|ZP_07970937.1| chromosomal replication initiation protein [Synechococcus sp. CB0205] Length = 468 Score = 93.7 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 40/251 (15%), Positives = 82/251 (32%), Gaps = 28/251 (11%) Query: 16 QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGP 72 Q+ +L +R +V A + P R + + G Sbjct: 112 QQRTATGEAPRKLAPGLNPRYVFNR--FVVGPNSRMAHAAALAVAEAPGREFNPLFICGG 169 Query: 73 SGSGKSCLANIWSD-------KSRSTRFSNIAKSLDSILI-------------DTRKPVL 112 G GK+ L ++R S + D I +L Sbjct: 170 VGLGKTHLMQAIGHYRLEIDPEARVAYVSTETFTNDLIQAIRKDGMQKFRDRYRAADLIL 229 Query: 113 LEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 ++DI ++ + + FH N++H+ +++ + P L SR + Sbjct: 230 VDDIQFIEGKEYTQEEFFHTFNALHEAGRQIVIASDRPPSQIPRLQERLISRFSMGLIAD 289 Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229 I PD + ++ K ++ + + L Y+ R ++ E + + A G+ Sbjct: 290 IQTPDLETRMAILHKKAEHERVSLPRDLIQYLAGRFTSNIRELEGALTRAVAFASITGLP 349 Query: 230 ITRSLAAEVLK 240 +T A +L+ Sbjct: 350 MTVESVAPMLE 360 >gi|322386432|ref|ZP_08060061.1| DNA-directed DNA replication initiator protein [Streptococcus cristatus ATCC 51100] gi|321269518|gb|EFX52449.1| DNA-directed DNA replication initiator protein [Streptococcus cristatus ATCC 51100] Length = 451 Score = 93.3 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 35/273 (12%), Positives = 88/273 (32%), Gaps = 32/273 (11%) Query: 3 LMKEDYSFFVPDKQKNDQPK--NKEEQLFFSFPRCLGISRDDLLVHSAI----EQAVRLI 56 + + + + K + + D+ + A+ + Sbjct: 80 FEEAGHDLVSKYQLEEQAEKTPFRPSLPPIDTGLKAKYTFDNFVQGDGNIWAKAAALAVS 139 Query: 57 DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI------------- 103 ++ + + + G G GK+ L N ++ K + + Sbjct: 140 ENLAT-TYNPLFIYGGPGLGKTHLLNAIGNQILENIPDARVKYIPAETFINDFLEHLRLG 198 Query: 104 -------LIDTRKPVLLEDIDLLDF----NDTQLFHIINSIHQYDSSLLMTARTFPVSWG 152 + + +L++DI L + F+ N++H + +++T+ P Sbjct: 199 DMDNFKKIYRSLDLLLIDDIQSLGGKKVSTQEEFFNTFNALHGDNKQIVLTSDRSPDHLD 258 Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 L +R K I+ PD + ++ + Y+ + + ++ Sbjct: 259 NLEERLVTRFKWGLTQNITPPDFETRIAILRNKIENLDYIFPNDTLEYLAGQFDSNVRDL 318 Query: 213 EKLVDKMDNLALSRG-MGITRSLAAEVLKETQQ 244 E ++ + +A R IT +AAE ++ +Q Sbjct: 319 EGALNDITLIARVRNLKEITIDIAAEAIRARKQ 351 >gi|88807751|ref|ZP_01123263.1| chromosomal replication initiation protein [Synechococcus sp. WH 7805] gi|88788965|gb|EAR20120.1| chromosomal replication initiation protein [Synechococcus sp. WH 7805] Length = 464 Score = 93.3 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 43/258 (16%), Positives = 86/258 (33%), Gaps = 29/258 (11%) Query: 13 PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VIL 69 P + + +L +R +V A + P R + + Sbjct: 107 PTVEALPKASKAPRRLP-GLNMRYVFNR--FVVGPNSRMAHAAALAVAEAPGREFNPLFI 163 Query: 70 VGPSGSGKSCLANIWSD-------KSRSTRFSNIAKSLDSILI-------------DTRK 109 G G GK+ L ++R S + + D IL Sbjct: 164 CGGVGLGKTHLMQAIGHYRLEIDPEARVFYVSTESFTNDLILAIRRDGMQAFRDRYRAAD 223 Query: 110 PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 +L++DI ++ + + FH N++H+ +++ + P L SR Sbjct: 224 LILVDDIQFIEGKEYTQEEFFHTFNALHEAGRQIVIASDRPPSQIPRLQERLISRFSMGL 283 Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 + I PD + ++ K ++ + + L YI R ++ E + + A Sbjct: 284 IADIQAPDLETRMAILQKKAEQERVALPRDLIQYISGRFTSNIRELEGALTRAVAFASIT 343 Query: 227 GMGITRSLAAEVLKETQQ 244 G+ +T A +L + Q Sbjct: 344 GLPMTVESVAPMLDPSGQ 361 >gi|183219428|ref|YP_001837424.1| chromosomal replication initiator protein DnaA [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189909574|ref|YP_001961129.1| chromosomal replication initiator protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|226735824|sp|B0S907|DNAA_LEPBA RecName: Full=Chromosomal replication initiator protein DnaA gi|226735825|sp|B0SK31|DNAA_LEPBP RecName: Full=Chromosomal replication initiator protein DnaA gi|167774250|gb|ABZ92551.1| Chromosomal replication initiator protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167777850|gb|ABZ96148.1| Chromosomal replication initiator protein DnaA [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 441 Score = 93.3 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 30/214 (14%), Positives = 70/214 (32%), Gaps = 30/214 (14%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--VILVGPSGSGKSCLANIWSDKSR--- 89 + + + A S P + + L GP G GK+ L + ++ + Sbjct: 102 NPEYIFSNYITSDSNRIAFTAAKSVVEQPGKYNPLYLFGPVGVGKTHLLHSIGNEIKKKD 161 Query: 90 ---STRFSNIAKSLDSILI-----------------DTRKPVLLEDIDLLDFN----DTQ 125 + R+ N L+ + + +L +DI L+ + Sbjct: 162 PWKTVRYVNSTSFLNEFIFTVRQNNRESLESFKIRYQSYNVLLFDDIQFLNGGAEKTQEE 221 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 F + N ++ +++ + + L SR I D + + ++ Sbjct: 222 FFALFNFLYDRKRQIVIASDRPSYELPLHDR-LKSRFVHGLQADIKSHDLELRKSLLKSN 280 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 F++ I L ++ +R+E +V+ + Sbjct: 281 FSEFNIPASDNLLHWLAERLEGDSRALIGIVNDL 314 >gi|313900935|ref|ZP_07834425.1| chromosomal replication initiator protein DnaA [Clostridium sp. HGF2] gi|312954355|gb|EFR36033.1| chromosomal replication initiator protein DnaA [Clostridium sp. HGF2] Length = 452 Score = 93.3 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 89/232 (38%), Gaps = 28/232 (12%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW-----SDKSR 89 + D +V +A S +P + + + G SG GK+ L + ++K+ Sbjct: 116 YTFDSFVVGKNNREAHAAALSVCYYPGKFNNPLFIFGNSGLGKTHLLHAIGNYVKANKAD 175 Query: 90 STRFSNIAKSLDSILIDTRKPVLLEDI-------DLLDFNDTQ----------LFHIINS 132 ++ ++LI+ K +ED+ D L +D Q F++ N Sbjct: 176 EKVLYIYSEDFVTLLIEAMKNKTVEDVKEMICSVDYLLIDDIQRLKQSTSQEIFFNMYNK 235 Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ-- 190 + + +++T+ P L SR + V + P+ + + ++ K R Sbjct: 236 LISDNKQIVITSDIHPTELKGIENRLISRFSSGLSVSVGSPEFETAKAILQKKMEGRSDE 295 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNLALSRGMGITRSLAAEVLKE 241 I ID ++ Y+ R + E ++++ L I + A E+ KE Sbjct: 296 IMIDDEVLDYLATRFASDVRKLEGTLNELFFKAILYNPERIDITFAKEIFKE 347 >gi|160872042|ref|ZP_02062174.1| chromosomal replication initiator protein DnaA [Rickettsiella grylli] gi|159120841|gb|EDP46179.1| chromosomal replication initiator protein DnaA [Rickettsiella grylli] Length = 464 Score = 93.3 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 32/189 (16%), Positives = 76/189 (40%), Gaps = 23/189 (12%) Query: 77 KSCLANIWSDK-------------SRSTRFSNIAKSLDSILID-------TRKPVLLEDI 116 K+ L + + +++ K+L + I+ + +L++DI Sbjct: 175 KTHLMHAIGNAILLKNPHAKVLYLHSERFVADMIKALQTNTINDFKTYYRSLDALLIDDI 234 Query: 117 DLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 + + FH N++ + +++T +P L SRL + I P Sbjct: 235 QFFAGKDRSQEEFFHTFNTLLESQQQIVLTCDRYPKEMSGVEERLKSRLGWGLTIAIEPP 294 Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233 D + +++ +I + +++A +I +R+ ++ E ++ ++ A G+ IT Sbjct: 295 DLETRVAILISKAEQTKISLPQEVAFFIAKRIHSNVRELEGVLKRVVAYAQFTGLQITLE 354 Query: 234 LAAEVLKET 242 L E +K+ Sbjct: 355 LVREAIKDV 363 >gi|332524901|ref|ZP_08401087.1| chromosomal replication initiation protein [Rubrivivax benzoatilyticus JA2] gi|332108196|gb|EGJ09420.1| chromosomal replication initiation protein [Rubrivivax benzoatilyticus JA2] Length = 349 Score = 93.3 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 37/234 (15%), Positives = 82/234 (35%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI-------- 83 ++ D L+ A + A P ++ + + G G GK+ L + Sbjct: 15 NPSLTFDTLVPGRANQMARTAALHVAGAPGQMYNPLFIYGGVGLGKTHLVHAVGNALLKD 74 Query: 84 ---------WSDKSRSTRFSNIAKSLDSILIDTR---KPVLLEDIDLLDFNDTQ---LFH 128 +++ S N + L +L++D+ D F+ Sbjct: 75 RPDARVLYLHAEQFISDVVKNYQRKTFDELKAKYHSLDLLLIDDVQFFAGKDRTQEVFFN 134 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + ++MT+ T+P L SR A V I P+ + +++K Sbjct: 135 TFEALLAKRAHIIMTSDTYPKGLVDIDERLTSRFDAGLTVAIEPPELEMRVAILIKKALA 194 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + +A +I + + ++ E + K+ + I +L + LK+ Sbjct: 195 EGAEMPEDVAFFIAKNVRANVRELEGALRKVLAYSRFSQKDINIALTRDALKDL 248 >gi|213865134|ref|ZP_03387253.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 282 Score = 93.3 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 61/139 (43%), Gaps = 3/139 (2%) Query: 107 TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 + +L++DI + + FH N++ + + +++T+ +P L SR Sbjct: 43 SVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFG 102 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 V I P+ + +++K + I + ++A +I +R+ ++ E ++++ A Sbjct: 103 WGLTVAIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANA 162 Query: 224 LSRGMGITRSLAAEVLKET 242 G IT E L++ Sbjct: 163 NFTGRAITIDFVREALRDL 181 >gi|169351632|ref|ZP_02868570.1| hypothetical protein CLOSPI_02413 [Clostridium spiroforme DSM 1552] gi|169291854|gb|EDS73987.1| hypothetical protein CLOSPI_02413 [Clostridium spiroforme DSM 1552] Length = 448 Score = 93.3 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 30/212 (14%), Positives = 74/212 (34%), Gaps = 29/212 (13%) Query: 37 GISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST-- 91 ++ ++ +V + A L+ + P + + G GK+ L N + ++ Sbjct: 109 SLTFENFVVGGSNRMAQNAALLVSTNPGSNFNPLFIYSNPGLGKTHLLNAIGNYAKEINP 168 Query: 92 ----RFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDFNDTQ---LFHII 130 R+ +D ++ + +L++DI L + FHI Sbjct: 169 NLNIRYITSKDFVDEVIGAMKGKDGDEIYEKYKQLDILLIDDIQFLFNKEKSSEIFFHIF 228 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM---FA 187 N + + +++T+ P L SR + I P+ + ++ K Sbjct: 229 NELINNNKQIVITSDKMPEDLQGIESRLISRFNSGLSFGIDPPEFETARAILEKKIENLD 288 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 + + I + + ++ R + E + ++ Sbjct: 289 NPSLIIQEDVIDFMASHYCRDIRSLEGALKRL 320 >gi|295687460|ref|YP_003591153.1| chromosomal replication initiator protein DnaA [Caulobacter segnis ATCC 21756] gi|295429363|gb|ADG08535.1| chromosomal replication initiator protein DnaA [Caulobacter segnis ATCC 21756] Length = 491 Score = 93.3 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 34/238 (14%), Positives = 77/238 (32%), Gaps = 32/238 (13%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANI--WSDKSR 89 + + + A E A + I +W V+ GP G GK+ L N W Sbjct: 151 QERFTFETFVPGPANEFAHAVARRIANWADGHFNPVLFHGPYGFGKTHLLNALAWEAMRN 210 Query: 90 STRFSNIAKSLDSIL------------------IDTRKPVLLEDIDLLDF---NDTQLFH 128 + + + + L + ++++D+ + +LFH Sbjct: 211 APEKRVVYLTAERFLSTFVRAVMDRQTAAFKEELRAADLLIIDDVHFIAGKQSTQEELFH 270 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK---- 184 + ++ + ++ +A P + L S L A V + D ++ + Sbjct: 271 TLTALVEEGRRVVFSADRPPSAMTEMDAHLRSHLSAGLVCGLEPADRSLRLGILERKIQT 330 Query: 185 MFADRQI--FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + A + + ++ R S+ E ++ + A +T +L+ Sbjct: 331 LSAAHGFEPTMRPDVLQFLADRFTDSVRELEGALNTLSARAGEGLSRMTLEEVQAILR 388 >gi|171056693|ref|YP_001789042.1| chromosomal replication initiation protein [Leptothrix cholodnii SP-6] gi|226735826|sp|B1Y547|DNAA_LEPCP RecName: Full=Chromosomal replication initiator protein DnaA gi|170774138|gb|ACB32277.1| chromosomal replication initiator protein DnaA [Leptothrix cholodnii SP-6] Length = 510 Score = 93.3 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 83/234 (35%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANI-------- 83 ++ D L+ A + A P + + G G GK+ L + Sbjct: 176 NPALTFDTLVPGRANQMARTAALHVVGAPGHMYNPLFIYGGVGLGKTHLIHAVGNALIRD 235 Query: 84 ---------WSDKSRSTRFSNIAKSLDSILIDTR---KPVLLEDIDLLDFND---TQLFH 128 +++ S N + L +L++D+ D + F+ Sbjct: 236 NPDARVLYLHAEQFISDVVRNYQRKTFDELKAKYHSLDLLLIDDVQFFAGKDRTQEEFFN 295 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ + ++MT+ T+P L SR A V I P+ + +++K Sbjct: 296 AFEALLAKRAHIIMTSDTYPKGLVDIDERLTSRFDAGLTVAIEPPELEMRVAILMKKSDA 355 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + +A ++ + + ++ E + K+ + I+ +LA E LK+ Sbjct: 356 EGSRMPEDVAFFVAKNVRANVRELEGALRKVLAYSRFSHKEISINLAREALKDL 409 >gi|121606999|ref|YP_984328.1| chromosomal replication initiation protein [Polaromonas naphthalenivorans CJ2] gi|120595968|gb|ABM39407.1| chromosomal replication initiator protein DnaA [Polaromonas naphthalenivorans CJ2] Length = 465 Score = 93.3 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 88/234 (37%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRS- 90 ++ D L+ +A S ++ + + G G GK+ L + +K + Sbjct: 131 NSALTFDTLIEGTANRMGRAAALHVASSLGQLYNPLFIYGGVGLGKTHLMHAIGNKLMAD 190 Query: 91 -----TRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDFND---TQLFH 128 + + + + ++ + +L++D+ L D + F+ Sbjct: 191 NPAAKVLYIHAEQFVSDVVKAYQRKTFDDFKERYHSLDLLLIDDVQFLANKDRTQEEFFN 250 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ S ++MT+ T+P L SR + V I P+ + ++++ Sbjct: 251 AFEALLTKKSHIVMTSDTYPKGLADIHERLVSRFDSGLTVAIEPPELEMRVAILIRKADA 310 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + +++A ++ + + ++ E + K+ + I+ LA E L++ Sbjct: 311 DGAVLPEEVAFFVAKNVRSNVRELEGALRKIQAYSRFSHKEISIQLAREALRDL 364 >gi|85709428|ref|ZP_01040493.1| chromosomal replication initiator protein [Erythrobacter sp. NAP1] gi|85688138|gb|EAQ28142.1| chromosomal replication initiator protein [Erythrobacter sp. NAP1] Length = 486 Score = 92.9 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 36/234 (15%), Positives = 79/234 (33%), Gaps = 27/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW-----SD 86 ++ + A A + + L +G GK+ L + Sbjct: 151 DPSLTFQAFVTGEANVLACNAAQRMAATEQPQFSPLYLKAATGQGKTHLLHAIGHAFLQA 210 Query: 87 KSRSTRFSNIAKSLDSILIDTRKP---------------VLLEDIDLL---DFNDTQLFH 128 R+ F A+ + K +L++DI + +L + Sbjct: 211 HPRARIFYCSAERFMVEFVQALKANQMIEFKARLRSFDLLLVDDIQFIIGKASAQEELLY 270 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 I+++ L+ A P + P L SRL V I D + +K++ + Sbjct: 271 TIDALLAEGKRLVFAADRAPQALDGVEPRLLSRLSMGLVADIQAADIELRKKILESKLSR 330 Query: 189 -RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + + + + ++ + + R++ ++K+ A G ++ LA E L + Sbjct: 331 FAPLSVPEDVIDFLARTITRNVRELVGGLNKLIAYAQLTGQEVSLQLAEEQLTD 384 >gi|157149691|ref|YP_001449323.1| chromosomal replication initiation protein [Streptococcus gordonii str. Challis substr. CH1] gi|157074485|gb|ABV09168.1| chromosomal replication initiator protein DnaA [Streptococcus gordonii str. Challis substr. CH1] Length = 450 Score = 92.9 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 33/246 (13%), Positives = 86/246 (34%), Gaps = 31/246 (12%) Query: 29 FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPS---WPSRVVILVGPSGSGKSCLANIWS 85 + + ++ + + A + + + G G GK+ L N Sbjct: 108 PLATGLKSKYTFENFVQGDGNQWAKAAALAVADNLGGIYNPLFIYGGPGLGKTHLLNAIG 167 Query: 86 DKS-----RSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLLDF---N 122 ++ + A++ + ++ + +L++DI L Sbjct: 168 NEVLENTPDARIKYVPAETFINDFLEHLRLGEMDSFKKIYRSLDLLLIDDIQALSKKVST 227 Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 + F+ N++H + +++T+ P L +R K I+ P+ + ++ Sbjct: 228 QEEFFNTFNALHGENKQIVLTSDRSPDYLENLEERLVTRFKWGLTSDITPPNFETRIAIL 287 Query: 183 VKMFADRQIFIDKKLAAYIVQRME---RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + + + Y+ + + R L A K ++ + ++ + IT +AAE + Sbjct: 288 RNKIEEFDLIFPNETIEYLAGQFDSNVRDLEGALKDINLL--ASMKQIKEITIDIAAEAI 345 Query: 240 KETQQC 245 + +Q Sbjct: 346 RSRKQA 351 >gi|42521651|ref|NP_967031.1| chromosomal replication initiator protein dnaA [Bdellovibrio bacteriovorus HD100] gi|61212608|sp|Q6MRS1|DNAA_BDEBA RecName: Full=Chromosomal replication initiator protein DnaA gi|39574181|emb|CAE77685.1| chromosomal replication initiator protein dnaA [Bdellovibrio bacteriovorus HD100] Length = 471 Score = 92.9 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 37/254 (14%), Positives = 88/254 (34%), Gaps = 34/254 (13%) Query: 15 KQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILV 70 + QP++ + L ++ +V E A + P + + Sbjct: 119 NIQPTQPRSSSDTL------NSELTFSTFVVGKNSEFAHAACYNVARNPGADDYNPLYIY 172 Query: 71 GPSGSGKSCLANI----WSDKSRSTRFSNIAKS-----------------LDSILIDTRK 109 GP G GK+ L + ++ + R + I+ + Sbjct: 173 GPVGMGKTHLLHAAGNHIREQYQHLRITYISAERFMNECISAIRRHEMDKFRQKYRENSD 232 Query: 110 PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 +L++D+ + + + FH +NS +++ + P +RL+ Sbjct: 233 ILLVDDVQFIARGEAVQEEFFHTVNSFIDSRKQVILASDRMPKDIHGLEDRSRTRLERGL 292 Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 + I++PD + ++ + + + + YI + +RS+ E + K+ + + Sbjct: 293 IADITMPDLETRIAILRYKAEKYNVRLPEDVVNYIARISKRSIRELEGNLKKVKMFSELQ 352 Query: 227 GMGITRSLAAEVLK 240 G+ I L +L Sbjct: 353 GLPIDHELVKRILA 366 >gi|163854305|ref|YP_001628603.1| chromosomal replication initiation protein [Bordetella petrii DSM 12804] gi|226735783|sp|A9HVA1|DNAA_BORPD RecName: Full=Chromosomal replication initiator protein DnaA gi|163258033|emb|CAP40332.1| chromosomal replication initiator protein [Bordetella petrii] Length = 478 Score = 92.9 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 33/232 (14%), Positives = 85/232 (36%), Gaps = 27/232 (11%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDKSRS---- 90 ++ D+ + A + A P + L G G GK+ L + + + Sbjct: 146 LTFDNFVTGKANQLARAAALQVAENPGISYNPLFLYGGVGLGKTHLIHAIGNAMVAAGTG 205 Query: 91 --TRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDF---NDTQLFHIIN 131 R+ + + + ++ + +L++DI + F+ Sbjct: 206 VRVRYVHADQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFYAFE 265 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 ++ +++T+ T+P L SR + V I P+ + ++++ + Sbjct: 266 AMVAQRKQIIITSDTYPKELAGIDSRLISRFDSGLTVAIEPPELEMRVAILLRKAESEGV 325 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI-TRSLAAEVLKET 242 + +++A +I + + ++ E + K+ A G + + + E LK+ Sbjct: 326 PMPEEVAFFIAKHLRSNVRELEGALRKVLAYARFHGRDVLSVDVCKEALKDL 377 >gi|157362871|ref|YP_001469638.1| chromosomal replication initiation protein [Thermotoga lettingae TMO] gi|167016906|sp|A8F346|DNAA_THELT RecName: Full=Chromosomal replication initiator protein DnaA gi|157313475|gb|ABV32574.1| chromosomal replication initiator protein DnaA [Thermotoga lettingae TMO] Length = 444 Score = 92.9 bits (230), Expect = 4e-17, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 80/229 (34%), Gaps = 27/229 (11%) Query: 17 KNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--VILVGPSG 74 D+P K+ L + P ++ ++ +V A P + + L G G Sbjct: 86 NEDEPLVKKRPLILT-PLNPILTFENFVVGPNNMFAYSTCLEVAKNPGKYNPLFLHGGVG 144 Query: 75 SGKSCLANI-----WSDKSRSTRFSNIAKSLDSILIDTRK----------------PVLL 113 GK+ L + + ++ + L+D+ K +LL Sbjct: 145 LGKTHLLQAIGHYLFKHEPDMRVIYLTSERFLNELVDSIKKNRVQEFRDKFRNKIDVLLL 204 Query: 114 EDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 +D+ L T+LFH N ++ +++ + P L SR + V KI Sbjct: 205 DDVQFLIGKTGIQTELFHTFNELYNEGKQIVVCSDRDPQQLEKFQDRLVSRFQMGVVTKI 264 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 PD++ K+ KM + + + I + +L + K+ Sbjct: 265 EKPDEETCFKIAQKMAQLENAELQEDILKLISKNFSDNLRRLRGALVKL 313 >gi|62184989|ref|YP_219774.1| chromosomal replication initiation protein [Chlamydophila abortus S26/3] gi|62148056|emb|CAH63809.1| chromosomal replication initiator protein [Chlamydophila abortus S26/3] Length = 450 Score = 92.9 bits (230), Expect = 4e-17, Method: Composition-based stats. Identities = 41/262 (15%), Positives = 93/262 (35%), Gaps = 35/262 (13%) Query: 11 FVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQ---AVRLIDSWPSWPSRVV 67 P +Q+ + EE F D+ + + + A I P + Sbjct: 93 VAPREQQETPIETFEESKDFELKLNTAYRFDNFIEGPSNQFVKSAAVGIAGRPGRSYNPL 152 Query: 68 ILVGPSGSGKSCLANIWSDKSRSTR-------------FSNIAKSLDSILID-------T 107 + G G GK+ L + R +++ + L ID + Sbjct: 153 FIHGGVGLGKTHLLHAVGHYVREHHKNLRVHCITTEAFINDLVQHLRLKSIDKMKNFYRS 212 Query: 108 RKPVLLEDI----DLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 +L++DI + +F + +IN + +++T+ P + + + Sbjct: 213 LDLLLVDDIQFLQNRQNFEEEFCNTFETLINL----NKQIVITSDKPPGQLKLS-ERIIA 267 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 R++ V + +PD + ++ + + I ++A YI + ++ E ++K+ Sbjct: 268 RMEWGLVAHVGIPDLETRVAILQHKAEQKGLHIPNEIAFYIADHIYGNVRQLEGAINKLT 327 Query: 221 NLALSRGMGITRSLAAEVLKET 242 G +T ++ + LKE Sbjct: 328 AYCRLFGKTLTETIVRDTLKEL 349 >gi|261378191|ref|ZP_05982764.1| DNA replication initiator protein [Neisseria cinerea ATCC 14685] gi|269145660|gb|EEZ72078.1| DNA replication initiator protein [Neisseria cinerea ATCC 14685] Length = 515 Score = 92.9 bits (230), Expect = 4e-17, Method: Composition-based stats. Identities = 39/255 (15%), Positives = 82/255 (32%), Gaps = 27/255 (10%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILV 70 K + D ++ EE + + D L+ A + P + L Sbjct: 159 AKARTDAQRDAEEARYEQTNLSPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSYNPFFLY 218 Query: 71 GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKP 110 G +G GK+ L ++ R + + S Sbjct: 219 GSTGLGKTHLVQAVGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDL 278 Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 ++++DI + D + F++ N H L++T P L SR Sbjct: 279 LIIDDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLT 338 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 +++ P+ + ++ K I I+ + A +I + ++ E +++ + Sbjct: 339 LELEPPELEMRIAILQKKAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVSASSRFMN 398 Query: 228 MG-ITRSLAAEVLKE 241 I LA L++ Sbjct: 399 RPVIDIDLARTALQD 413 >gi|187918302|ref|YP_001883865.1| chromosomal replication initiator protein DnaA [Borrelia hermsii DAH] gi|226735782|sp|B2S0D9|DNAA_BORHD RecName: Full=Chromosomal replication initiator protein DnaA gi|119861150|gb|AAX16945.1| chromosomal replication initiator protein DnaA [Borrelia hermsii DAH] Length = 484 Score = 92.9 bits (230), Expect = 4e-17, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 77/209 (36%), Gaps = 26/209 (12%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRVV---ILVGPSGSGKSCLANIWSDKSRSTR- 92 + ++ + + A S P + ++ G G GK+ L +K+ Sbjct: 145 KYTFENFITGPNNKLAYNASLSIAKNPGKKYNPCLIYGGVGLGKTHLLQSIGNKTEELHK 204 Query: 93 -FSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFHII 130 F + + ++ L + + + LL+DI L + +LFH Sbjct: 205 EFKILYVTAENFLNEFVESIKTNETKRFKKKYRYLDMLLLDDIHDLQKKEGIQEELFHTF 264 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N++++ + ++ T P L SR V IS P+ + +I K + Sbjct: 265 NALYEDNKQMVFTCDRQPSELINFTDRLKSRFTRGLNVDISKPNFELRVAIIEKKAEEDG 324 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 I + K + + +++ ++ E V K+ Sbjct: 325 IKVPKSILNLVAKKVTTNIRDLEAAVTKL 353 >gi|296112231|ref|YP_003626169.1| chromosomal replication initiator protein DnaA [Moraxella catarrhalis RH4] gi|295919925|gb|ADG60276.1| chromosomal replication initiator protein DnaA [Moraxella catarrhalis RH4] gi|326561743|gb|EGE12078.1| chromosomal replication initiator protein DnaA [Moraxella catarrhalis 7169] gi|326569036|gb|EGE19105.1| chromosomal replication initiator protein DnaA [Moraxella catarrhalis BC1] Length = 467 Score = 92.9 bits (230), Expect = 4e-17, Method: Composition-based stats. Identities = 33/245 (13%), Positives = 82/245 (33%), Gaps = 32/245 (13%) Query: 32 FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV----VILVGPSGSGKSCLANIWSDK 87 P G + D + + A + S+ + + G SG GK+ L + + + Sbjct: 125 LPIDPGFTFDVFIKGKSNASAYNACNELSRKESKHNYGPIFIYGSSGLGKTHLMHAMAHR 184 Query: 88 SRSTRFSNIAKSLDSIL------------------IDTRKPVLLEDIDLLDFNDT----- 124 + + D I ++++D+ ++ + Sbjct: 185 YQKYGKQFFYFTKDHFYKITLEAFRTNDIVQMEKEICQADLLIIDDVHMVSGSKAPKVTE 244 Query: 125 ---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 +LF S +++ + P SRL + + I PD + ++ Sbjct: 245 ILMKLFDAF-SAGNTQKQVVLASDRPPSQMTSFGERYISRLSSCLQLSIEPPDMEMRIQI 303 Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNLALSRGMGITRSLAAEVLK 240 + K + + ++ A Y+ Q + + E + ++ + + R ++ L + +K Sbjct: 304 LEKKAQMLNLLLPRECALYMAQNLPPDVRGLEGALKRVQLSATILRNEPVSLPLVKDAIK 363 Query: 241 ETQQC 245 + Q Sbjct: 364 DQVQA 368 >gi|113953832|ref|YP_731136.1| chromosomal replication initiation protein [Synechococcus sp. CC9311] gi|123327711|sp|Q0I8T6|DNAA_SYNS3 RecName: Full=Chromosomal replication initiator protein DnaA gi|113881183|gb|ABI46141.1| chromosomal replication initiator protein DnaA [Synechococcus sp. CC9311] Length = 468 Score = 92.9 bits (230), Expect = 4e-17, Method: Composition-based stats. Identities = 41/251 (16%), Positives = 81/251 (32%), Gaps = 29/251 (11%) Query: 20 QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSG 76 P +L +R +V A + P R + + G G G Sbjct: 118 PPSTAPRRLP-GLNMRYVFNR--FVVGPNSRMAHAAALAVAEAPGREFNPLFICGGVGLG 174 Query: 77 KSCLANIWSD-------KSRSTRFSNIAKSLDSILI-------------DTRKPVLLEDI 116 K+ L ++R S + D I +L++DI Sbjct: 175 KTHLMQAIGHYRLEIDPEARVFYVSTETFTNDLITAIRKDGMQAFRDRYRAADLILVDDI 234 Query: 117 DLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 ++ + + FH N++H +++ + P L SR + I P Sbjct: 235 QFIEGKEYTQEEFFHTFNALHDAGRQIVIASDRPPSQIPRLQERLISRFSMGLIADIQAP 294 Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233 D + ++ K ++ + + L YI R ++ E + + + G+ +T Sbjct: 295 DLETRMAILQKKAEQERVALPRDLIQYISGRFTSNIRELEGALTRAVAFSSITGIPMTVE 354 Query: 234 LAAEVLKETQQ 244 A +L + Q Sbjct: 355 SVAPMLDPSGQ 365 >gi|116075382|ref|ZP_01472642.1| chromosomal replication initiation protein [Synechococcus sp. RS9916] gi|116067579|gb|EAU73333.1| chromosomal replication initiation protein [Synechococcus sp. RS9916] Length = 469 Score = 92.9 bits (230), Expect = 4e-17, Method: Composition-based stats. Identities = 42/258 (16%), Positives = 85/258 (32%), Gaps = 33/258 (12%) Query: 13 PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VIL 69 P + P+ R +R +V A + P R + + Sbjct: 116 PSPGQTRAPRRLP-----GLNRRYVFNR--FVVGPNSRMAHAAALAVAESPGREFNPLFI 168 Query: 70 VGPSGSGKSCLANIWSD-------KSRSTRFSNIAKSLDSILI-------------DTRK 109 G G GK+ L +R + S + D I+ Sbjct: 169 CGGVGLGKTHLMQAIGHYRLEIDPDARVSYVSTETFTNDLIVAIRKDGMQAFRDRYRATD 228 Query: 110 PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 +L++DI ++ + + FH N++H+ +++ + P L SR Sbjct: 229 LILVDDIQFIEGKEYTQEEFFHTFNALHEAGRQIVIASDRPPSQIPRLQERLISRFSMGL 288 Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 + I PD + ++ K ++ + + L Y+ R ++ E + + A Sbjct: 289 IADIQAPDLETRMAILQKKAEQEKVSLPRDLIQYLSGRFTSNIRELEGALTRAVAFASIT 348 Query: 227 GMGITRSLAAEVLKETQQ 244 G+ +T A +L + Q Sbjct: 349 GLPMTVESVAPMLDPSGQ 366 >gi|33863457|ref|NP_895017.1| chromosomal replication initiation protein [Prochlorococcus marinus str. MIT 9313] gi|61212718|sp|Q7V6H4|DNAA_PROMM RecName: Full=Chromosomal replication initiator protein DnaA gi|33640906|emb|CAE21362.1| chromosomal replication initiator protein DnaA [Prochlorococcus marinus str. MIT 9313] Length = 465 Score = 92.5 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 40/251 (15%), Positives = 82/251 (32%), Gaps = 28/251 (11%) Query: 20 QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSG 76 P + ++ +R +V A + P R + + G G G Sbjct: 114 APSSGPRRILPGLNLRYVFNR--FVVGPNSRMAHAAALAVAEAPGREFNPLFICGGVGLG 171 Query: 77 KSCLANIWSD-------KSRSTRFSNIAKSLDSILI-------------DTRKPVLLEDI 116 K+ L +++ S + D I +L++DI Sbjct: 172 KTHLMQAIGHYRLEINPEAKVAYVSTETFTNDLIQAIRKDGMQAFRDRYRATDLILVDDI 231 Query: 117 DLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 ++ + + FH N++H+ +++ + P L SR + I P Sbjct: 232 QFIEGKEYTQEEFFHTFNALHEAGRQIVIASDRPPSQIPKLQERLISRFSMGLIADIQSP 291 Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233 D + ++ K ++ + + L YI R ++ E + + A G+ +T Sbjct: 292 DLETRMAILQKKAEQERMMLPRDLIQYIAGRFTSNIRELEGALTRAVAFASITGLPMTVE 351 Query: 234 LAAEVLKETQQ 244 A +L Q Sbjct: 352 SVAPMLDPNGQ 362 >gi|317153893|ref|YP_004121941.1| chromosomal replication initiator protein DnaA [Desulfovibrio aespoeensis Aspo-2] gi|316944144|gb|ADU63195.1| chromosomal replication initiator protein DnaA [Desulfovibrio aespoeensis Aspo-2] Length = 451 Score = 92.5 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 40/239 (16%), Positives = 86/239 (35%), Gaps = 32/239 (13%) Query: 34 RCLGISRDDLLVHSAIEQAVR----LIDSWPSWPSRVVILVGPSGSGKSCLANI------ 83 S DD +V + E A L DS ++ S + L G GK+ L + Sbjct: 116 HNWRFSFDDFVVGPSNELACAASKSLCDS--AFSSDHLFLSSGPGLGKTHLLHSVGNQLC 173 Query: 84 -----------------WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND--- 123 ++ + S + + +LLED+ + Sbjct: 174 RAANRKNLKVACLSSEDFATRMVLAIKSRQVDVFKAQFRENLDVLLLEDVHFFQGKEKMQ 233 Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 +L + ++ + +L+T+ P + L SR + + I+ PD + ++++ Sbjct: 234 EELLCTLTALRERGCKVLLTSSFMPKEFSGVDNRLVSRFCSGFLAHINRPDLETRRRIVL 293 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + Q+ + +++ + +R+ + E + + A +T +LA EVL Sbjct: 294 EKARKLQVSVPVEVSELLAERITTDIRQLESCLSNLVLKARLLNRAVTLNLAWEVLDNY 352 >gi|203287879|ref|YP_002222894.1| chromosomal replication initiator protein [Borrelia recurrentis A1] gi|226735784|sp|B5RRN9|DNAA_BORRA RecName: Full=Chromosomal replication initiator protein DnaA gi|201085099|gb|ACH94673.1| chromosomal replication initiator protein [Borrelia recurrentis A1] Length = 484 Score = 92.5 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 79/209 (37%), Gaps = 26/209 (12%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRVV---ILVGPSGSGKSCLANIWSDKSRSTR- 92 + ++ ++ + + A S P + ++ G G GK+ L +K+ Sbjct: 145 KYTFENFIIGTNNKLAYNASLSIAKNPGKKYNPCLIYGGVGLGKTHLLQSIGNKTEELHK 204 Query: 93 -FSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFHII 130 F + + ++ L + + + LL+DI L + +LFH Sbjct: 205 EFKILYVTAENFLNEFVESIKTNETKRFKKKYRHLDMLLLDDIHDLQKKEGIQEELFHTF 264 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N++++ + ++ T P L SR V IS P+ + +I K + Sbjct: 265 NALYEDNKQMVFTCDRQPSELVNFTDRLKSRFTRGLNVDISKPNFELRVAIIEKKAEEDG 324 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 I + K + + +++ ++ E V K+ Sbjct: 325 IKVPKNILNLVAKKVTTNIRDLEAAVTKL 353 >gi|203284345|ref|YP_002222085.1| chromosomal replication initiator protein [Borrelia duttonii Ly] gi|226735781|sp|B5RLZ3|DNAA_BORDL RecName: Full=Chromosomal replication initiator protein DnaA gi|201083788|gb|ACH93379.1| chromosomal replication initiator protein [Borrelia duttonii Ly] Length = 484 Score = 92.5 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 79/209 (37%), Gaps = 26/209 (12%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRVV---ILVGPSGSGKSCLANIWSDKSRSTR- 92 + ++ ++ + + A S P + ++ G G GK+ L +K+ Sbjct: 145 KYTFENFIIGTNNKLAYNASLSIAKNPGKKYNPCLIYGGVGLGKTHLLQSIGNKTEELHK 204 Query: 93 -FSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQLFHII 130 F + + ++ L + + + LL+DI L + +LFH Sbjct: 205 EFKILYVTAENFLNEFVESIKTNETKRFKKKYRHLDMLLLDDIHDLQKKEGIQEELFHTF 264 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N++++ + ++ T P L SR V IS P+ + +I K + Sbjct: 265 NALYEDNKQMVFTCDRQPSELVNFTDRLKSRFTRGLNVDISKPNFELRVAIIEKKAEEDG 324 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 I + K + + +++ ++ E V K+ Sbjct: 325 IKVPKNILNLVAKKVTTNIRDLEAAVTKL 353 >gi|197106892|ref|YP_002132269.1| chromosomal replication initiator protein DnaA [Phenylobacterium zucineum HLK1] gi|196480312|gb|ACG79840.1| chromosomal replication initiator protein DnaA [Phenylobacterium zucineum HLK1] Length = 484 Score = 92.5 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 36/217 (16%), Positives = 73/217 (33%), Gaps = 32/217 (14%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI--W----- 84 S D + A E A + +W V+ GP G GK+ L N W Sbjct: 144 QERFSFDTFVSGPANEFAFAVARRVATWADGHFNPVLFHGPYGFGKTHLLNALAWEAMRT 203 Query: 85 ----------SDKSRSTRFSNIAKSLDSILIDT---RKPVLLEDIDLLDF---NDTQLFH 128 +++ +T + D +L++D+ + +LFH Sbjct: 204 APDKRVVYLTAERFTTTFVKALQDRQTQAFKDDLRNADLLLIDDVHFVAGKTQTQEELFH 263 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK---- 184 + ++ + +++TA P P L S L+A V I D ++ + Sbjct: 264 TLIALVEDGRRVVLTADRSPTELSEMEPRLRSHLQAGLVCGIEPADRSLRLGILERKLLT 323 Query: 185 MFADRQIFID--KKLAAYIVQRMERSLVFAEKLVDKM 219 + + ++ ++ R S+ E ++ + Sbjct: 324 LATQGRFHPSARPEVLQFLADRFTDSVRELEGALNTL 360 >gi|322377905|ref|ZP_08052393.1| replication initiation protein DnaA [Streptococcus sp. M334] gi|321281081|gb|EFX58093.1| replication initiation protein DnaA [Streptococcus sp. M334] Length = 453 Score = 92.5 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 35/242 (14%), Positives = 80/242 (33%), Gaps = 28/242 (11%) Query: 31 SFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87 + D+ + AV + + + + G G GK+ L N ++ Sbjct: 112 DTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTYNPLFIYGGPGLGKTHLLNAIGNE 171 Query: 88 -----SRSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLLDF----ND 123 + A+S + +D + +L++DI L Sbjct: 172 ILKNIPNARVKYIPAESFINDFLDHLRLGEMEKFKKTYRSLDLLLIDDIQSLSGKKVATQ 231 Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 + F+ N++H +++T+ P L +R I+ PD + ++ Sbjct: 232 EEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQTITPPDFETRIAILQ 291 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVLKET 242 Y+ + + ++ E ++ + +A + IT +AAE ++ Sbjct: 292 SKTEHLGYNFQSDTLEYLAGQFDSNVRDLEGAINDITLIARVKKIKDITIDIAAEAIRAR 351 Query: 243 QQ 244 +Q Sbjct: 352 KQ 353 >gi|307705907|ref|ZP_07642745.1| chromosomal replication initiator protein DnaA [Streptococcus mitis SK597] gi|307620568|gb|EFN99666.1| chromosomal replication initiator protein DnaA [Streptococcus mitis SK597] Length = 453 Score = 92.5 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 35/242 (14%), Positives = 80/242 (33%), Gaps = 28/242 (11%) Query: 31 SFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87 + D+ + AV + + + + G G GK+ L N ++ Sbjct: 112 DTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTYNPLFIYGGPGLGKTHLLNAIGNE 171 Query: 88 -----SRSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLLDF----ND 123 + A+S + +D + +L++DI L Sbjct: 172 ILKNIPNARVKYIPAESFINDFLDHLRLGEMEKFKKTYRSLDLLLIDDIQSLSGKKVATQ 231 Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 + F+ N++H +++T+ P L +R I+ PD + ++ Sbjct: 232 EEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQTITPPDFETRIAILQ 291 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVLKET 242 Y+ + + ++ E ++ + +A + IT +AAE ++ Sbjct: 292 SKTEHLGYNFQSDTLEYLAGQFDSNVRDLEGAINDITLIARVKKIKDITIDIAAEAIRAR 351 Query: 243 QQ 244 +Q Sbjct: 352 KQ 353 >gi|301793326|emb|CBW35685.1| chromosomal replication initiator protein [Streptococcus pneumoniae INV104] Length = 453 Score = 92.5 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 35/242 (14%), Positives = 80/242 (33%), Gaps = 28/242 (11%) Query: 31 SFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87 + D+ + AV + + + + G G GK+ L N ++ Sbjct: 112 DTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTYNPLFIYGGPGLGKTHLLNAIGNE 171 Query: 88 -----SRSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLLDF----ND 123 + A+S + +D + +L++DI L Sbjct: 172 ILKNIPNARVKYIPAESFINDFLDHLRLGEMEKFKKTYRSLDLLLIDDIQSLSGKKVATQ 231 Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 + F+ N++H +++T+ P L +R I+ PD + ++ Sbjct: 232 EEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQTITPPDFETRIAILQ 291 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVLKET 242 Y+ + + ++ E ++ + +A + IT +AAE ++ Sbjct: 292 SKTEHLGYNFQSDTLEYLAGQFDSNVRDLEGAINDITLIARVKKIKDITIDIAAEAIRAR 351 Query: 243 QQ 244 +Q Sbjct: 352 KQ 353 >gi|298501757|ref|YP_003723697.1| chromosomal replication initiation protein [Streptococcus pneumoniae TCH8431/19A] gi|298237352|gb|ADI68483.1| chromosomal replication initiation protein [Streptococcus pneumoniae TCH8431/19A] Length = 432 Score = 92.5 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 35/242 (14%), Positives = 80/242 (33%), Gaps = 28/242 (11%) Query: 31 SFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87 + D+ + AV + + + + G G GK+ L N ++ Sbjct: 91 DTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTYNPLFIYGGPGLGKTHLLNAIGNE 150 Query: 88 -----SRSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLLDF----ND 123 + A+S + +D + +L++DI L Sbjct: 151 ILKNIPNARVKYIPAESFINDFLDHLRLGEMEKFKKTYRSLDLLLIDDIQSLSGKKVATQ 210 Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 + F+ N++H +++T+ P L +R I+ PD + ++ Sbjct: 211 EEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQTITPPDFETRIAILQ 270 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVLKET 242 Y+ + + ++ E ++ + +A + IT +AAE ++ Sbjct: 271 SKTEHLGYNFQSDTLEYLAGQFDSNVRDLEGAINDITLIARVKKIKDITIDIAAEAIRAR 330 Query: 243 QQ 244 +Q Sbjct: 331 KQ 332 >gi|225860013|ref|YP_002741522.1| chromosomal replication initiation protein [Streptococcus pneumoniae Taiwan19F-14] gi|254777920|sp|C1CU44|DNAA_STRZT RecName: Full=Chromosomal replication initiator protein DnaA gi|225727811|gb|ACO23662.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae Taiwan19F-14] gi|327388986|gb|EGE87334.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae GA04375] Length = 453 Score = 92.5 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 35/242 (14%), Positives = 80/242 (33%), Gaps = 28/242 (11%) Query: 31 SFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87 + D+ + AV + + + + G G GK+ L N ++ Sbjct: 112 DTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTYNPLFIYGGPGLGKTHLLNAIGNE 171 Query: 88 -----SRSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLLDF----ND 123 + A+S + +D + +L++DI L Sbjct: 172 ILKNIPNARVKYIPAESFINDFLDHLRLGEMEKFKKTYRSLDLLLIDDIQSLSGKKVATQ 231 Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 + F+ N++H +++T+ P L +R I+ PD + ++ Sbjct: 232 EEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQTITPPDFETRIAILQ 291 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVLKET 242 Y+ + + ++ E ++ + +A + IT +AAE ++ Sbjct: 292 SKTEHLGYNFQSDTLEYLAGQFDSNVRDLEGAINDITLIARVKKIKDITIDIAAEAIRAR 351 Query: 243 QQ 244 +Q Sbjct: 352 KQ 353 >gi|225855736|ref|YP_002737247.1| chromosomal replication initiation protein [Streptococcus pneumoniae P1031] gi|254777919|sp|C1CN66|DNAA_STRZP RecName: Full=Chromosomal replication initiator protein DnaA gi|225725753|gb|ACO21605.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae P1031] Length = 453 Score = 92.5 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 35/242 (14%), Positives = 80/242 (33%), Gaps = 28/242 (11%) Query: 31 SFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87 + D+ + AV + + + + G G GK+ L N ++ Sbjct: 112 DTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTYNPLFIYGGPGLGKTHLLNAIGNE 171 Query: 88 -----SRSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLLDF----ND 123 + A+S + +D + +L++DI L Sbjct: 172 ILKNIPNARVKYIPAESFINDFLDHLRLGEMEKFKKTYRSLDLLLIDDIQSLSGKKVATQ 231 Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 + F+ N++H +++T+ P L +R I+ PD + ++ Sbjct: 232 EEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQTITPPDFETRIAILQ 291 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVLKET 242 Y+ + + ++ E ++ + +A + IT +AAE ++ Sbjct: 292 SKTEHLGYNFQSDTLEYLAGQFDSNVRDLEGAINDITLIARVKKIKDITIDIAAEAIRAR 351 Query: 243 QQ 244 +Q Sbjct: 352 KQ 353 >gi|2109445|gb|AAC45336.1| initiator protein [Streptococcus pneumoniae] Length = 453 Score = 92.5 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 35/242 (14%), Positives = 80/242 (33%), Gaps = 28/242 (11%) Query: 31 SFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87 + D+ + AV + + + + G G GK+ L N ++ Sbjct: 112 DTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTYNPLFIYGGPGLGKTHLLNAIGNE 171 Query: 88 -----SRSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLLDF----ND 123 + A+S + +D + +L++DI L Sbjct: 172 ILKNIPNARVKYIPAESFINDFLDHLRLGEMEKFKKTYRSLDLLLIDDIQSLSGKKVATQ 231 Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 + F+ N++H +++T+ P L +R I+ PD + ++ Sbjct: 232 EEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQTITPPDFETRIAILQ 291 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVLKET 242 Y+ + + ++ E ++ + +A + IT +AAE ++ Sbjct: 292 SKTEHLGYNFQSDTLEYLAGQFDSNVRDLEGAINDITLIARVKKIKDITIDIAAEAIRAR 351 Query: 243 QQ 244 +Q Sbjct: 352 KQ 353 >gi|15902045|ref|NP_357595.1| chromosomal replication initiation protein [Streptococcus pneumoniae R6] gi|116516053|ref|YP_815417.1| chromosomal replication initiation protein [Streptococcus pneumoniae D39] gi|148984545|ref|ZP_01817833.1| chromosomal replication initiation protein [Streptococcus pneumoniae SP3-BS71] gi|148988886|ref|ZP_01820301.1| chromosomal replication initiation protein [Streptococcus pneumoniae SP6-BS73] gi|148997957|ref|ZP_01825470.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae SP11-BS70] gi|149013383|ref|ZP_01834092.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae SP19-BS75] gi|149020159|ref|ZP_01835133.1| chromosomal replication initiation protein [Streptococcus pneumoniae SP23-BS72] gi|168484307|ref|ZP_02709259.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae CDC1873-00] gi|168491771|ref|ZP_02715914.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae CDC0288-04] gi|168493999|ref|ZP_02718142.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae CDC3059-06] gi|169832473|ref|YP_001693435.1| chromosomal replication initiation protein [Streptococcus pneumoniae Hungary19A-6] gi|182682971|ref|YP_001834718.1| chromosomal replication initiation protein [Streptococcus pneumoniae CGSP14] gi|221230949|ref|YP_002510101.1| chromosomal replication initiator protein [Streptococcus pneumoniae ATCC 700669] gi|225853612|ref|YP_002735124.1| chromosomal replication initiation protein [Streptococcus pneumoniae JJA] gi|237651054|ref|ZP_04525306.1| chromosomal replication initiation protein [Streptococcus pneumoniae CCRI 1974] gi|237821167|ref|ZP_04597012.1| chromosomal replication initiation protein [Streptococcus pneumoniae CCRI 1974M2] gi|298229492|ref|ZP_06963173.1| chromosomal replication initiation protein [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255938|ref|ZP_06979524.1| chromosomal replication initiation protein [Streptococcus pneumoniae str. Canada MDR_19A] gi|303254902|ref|ZP_07340987.1| chromosomal replication initiation protein [Streptococcus pneumoniae BS455] gi|303259727|ref|ZP_07345703.1| chromosomal replication initiation protein [Streptococcus pneumoniae SP-BS293] gi|303262194|ref|ZP_07348139.1| chromosomal replication initiation protein [Streptococcus pneumoniae SP14-BS292] gi|303265390|ref|ZP_07351297.1| chromosomal replication initiation protein [Streptococcus pneumoniae BS397] gi|303266062|ref|ZP_07351956.1| chromosomal replication initiation protein [Streptococcus pneumoniae BS457] gi|303268470|ref|ZP_07354264.1| chromosomal replication initiation protein [Streptococcus pneumoniae BS458] gi|307066637|ref|YP_003875603.1| DNA replication initiation ATPase [Streptococcus pneumoniae AP200] gi|38257595|sp|Q8DRQ4|DNAA_STRR6 RecName: Full=Chromosomal replication initiator protein DnaA gi|122279578|sp|Q04N63|DNAA_STRP2 RecName: Full=Chromosomal replication initiator protein DnaA gi|226735854|sp|B1I6X3|DNAA_STRPI RecName: Full=Chromosomal replication initiator protein DnaA gi|226735855|sp|B2IQY9|DNAA_STRPS RecName: Full=Chromosomal replication initiator protein DnaA gi|254777916|sp|B8ZJH9|DNAA_STRPJ RecName: Full=Chromosomal replication initiator protein DnaA gi|254777918|sp|C1CH81|DNAA_STRZJ RecName: Full=Chromosomal replication initiator protein DnaA gi|15457529|gb|AAK98805.1| DNA biosynthesis, initiation, binding protein [Streptococcus pneumoniae R6] gi|116076629|gb|ABJ54349.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae D39] gi|147755967|gb|EDK63010.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae SP11-BS70] gi|147762906|gb|EDK69854.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae SP19-BS75] gi|147923322|gb|EDK74436.1| chromosomal replication initiation protein [Streptococcus pneumoniae SP3-BS71] gi|147925697|gb|EDK76773.1| chromosomal replication initiation protein [Streptococcus pneumoniae SP6-BS73] gi|147930837|gb|EDK81818.1| chromosomal replication initiation protein [Streptococcus pneumoniae SP23-BS72] gi|168994975|gb|ACA35587.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae Hungary19A-6] gi|172042405|gb|EDT50451.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae CDC1873-00] gi|182628305|gb|ACB89253.1| chromosomal replication initiation protein [Streptococcus pneumoniae CGSP14] gi|183573942|gb|EDT94470.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae CDC0288-04] gi|183576010|gb|EDT96538.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae CDC3059-06] gi|220673409|emb|CAR67867.1| chromosomal replication initiator protein [Streptococcus pneumoniae ATCC 700669] gi|225723669|gb|ACO19522.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae JJA] gi|301799150|emb|CBW31662.1| chromosomal replication initiator protein [Streptococcus pneumoniae OXC141] gi|301800974|emb|CBW33635.1| chromosomal replication initiator protein [Streptococcus pneumoniae INV200] gi|302598173|gb|EFL65234.1| chromosomal replication initiation protein [Streptococcus pneumoniae BS455] gi|302636834|gb|EFL67324.1| chromosomal replication initiation protein [Streptococcus pneumoniae SP14-BS292] gi|302639279|gb|EFL69738.1| chromosomal replication initiation protein [Streptococcus pneumoniae SP-BS293] gi|302641971|gb|EFL72324.1| chromosomal replication initiation protein [Streptococcus pneumoniae BS458] gi|302644366|gb|EFL74619.1| chromosomal replication initiation protein [Streptococcus pneumoniae BS457] gi|302645067|gb|EFL75307.1| chromosomal replication initiation protein [Streptococcus pneumoniae BS397] gi|306408174|gb|ADM83601.1| ATPase involved in DNA replication initiation [Streptococcus pneumoniae AP200] gi|332077808|gb|EGI88267.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae GA41301] gi|332198865|gb|EGJ12947.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae GA47368] Length = 453 Score = 92.5 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 35/242 (14%), Positives = 80/242 (33%), Gaps = 28/242 (11%) Query: 31 SFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87 + D+ + AV + + + + G G GK+ L N ++ Sbjct: 112 DTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTYNPLFIYGGPGLGKTHLLNAIGNE 171 Query: 88 -----SRSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLLDF----ND 123 + A+S + +D + +L++DI L Sbjct: 172 ILKNIPNARVKYIPAESFINDFLDHLRLGEMEKFKKTYRSLDLLLIDDIQSLSGKKVATQ 231 Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 + F+ N++H +++T+ P L +R I+ PD + ++ Sbjct: 232 EEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQTITPPDFETRIAILQ 291 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVLKET 242 Y+ + + ++ E ++ + +A + IT +AAE ++ Sbjct: 292 SKTEHLGYNFQSDTLEYLAGQFDSNVRDLEGAINDITLIARVKKIKDITIDIAAEAIRAR 351 Query: 243 QQ 244 +Q Sbjct: 352 KQ 353 >gi|15899950|ref|NP_344554.1| chromosomal replication initiation protein [Streptococcus pneumoniae TIGR4] gi|148993607|ref|ZP_01823078.1| chromosomal replication initiation protein [Streptococcus pneumoniae SP9-BS68] gi|149007716|ref|ZP_01831325.1| chromosomal replication initiation protein [Streptococcus pneumoniae SP18-BS74] gi|168487221|ref|ZP_02711729.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae CDC1087-00] gi|168489313|ref|ZP_02713512.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae SP195] gi|168576111|ref|ZP_02722016.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae MLV-016] gi|194398133|ref|YP_002036722.1| chromosomal replication initiation protein [Streptococcus pneumoniae G54] gi|225857810|ref|YP_002739320.1| chromosomal replication initiation protein [Streptococcus pneumoniae 70585] gi|307126152|ref|YP_003878183.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae 670-6B] gi|18266737|sp|O08397|DNAA_STRPN RecName: Full=Chromosomal replication initiator protein DnaA gi|226735853|sp|B5E568|DNAA_STRP4 RecName: Full=Chromosomal replication initiator protein DnaA gi|254777915|sp|C1C982|DNAA_STRP7 RecName: Full=Chromosomal replication initiator protein DnaA gi|14971465|gb|AAK74194.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae TIGR4] gi|147760711|gb|EDK67683.1| chromosomal replication initiation protein [Streptococcus pneumoniae SP18-BS74] gi|147927828|gb|EDK78850.1| chromosomal replication initiation protein [Streptococcus pneumoniae SP9-BS68] gi|183569905|gb|EDT90433.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae CDC1087-00] gi|183572228|gb|EDT92756.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae SP195] gi|183578101|gb|EDT98629.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae MLV-016] gi|194357800|gb|ACF56248.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae G54] gi|225721516|gb|ACO17370.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae 70585] gi|306483214|gb|ADM90083.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae 670-6B] gi|332071323|gb|EGI81818.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae GA17545] gi|332071685|gb|EGI82178.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae GA17570] gi|332199068|gb|EGJ13149.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae GA47901] Length = 453 Score = 92.5 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 35/242 (14%), Positives = 80/242 (33%), Gaps = 28/242 (11%) Query: 31 SFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87 + D+ + AV + + + + G G GK+ L N ++ Sbjct: 112 DTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTYNPLFIYGGPGLGKTHLLNAIGNE 171 Query: 88 -----SRSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLLDF----ND 123 + A+S + +D + +L++DI L Sbjct: 172 ILKNIPNARVKYIPAESFINDFLDHLRLGEMEKFKKTYRSLDLLLIDDIQSLSGKKVATQ 231 Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 + F+ N++H +++T+ P L +R I+ PD + ++ Sbjct: 232 EEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQTITPPDFETRIAILQ 291 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVLKET 242 Y+ + + ++ E ++ + +A + IT +AAE ++ Sbjct: 292 SKTEHLGYNFQSDTLEYLAGQFDSNVRDLEGAINDITLIARVKKIKDITIDIAAEAIRAR 351 Query: 243 QQ 244 +Q Sbjct: 352 KQ 353 >gi|111658629|ref|ZP_01409279.1| hypothetical protein SpneT_02000219 [Streptococcus pneumoniae TIGR4] Length = 432 Score = 92.5 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 35/242 (14%), Positives = 80/242 (33%), Gaps = 28/242 (11%) Query: 31 SFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87 + D+ + AV + + + + G G GK+ L N ++ Sbjct: 91 DTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTYNPLFIYGGPGLGKTHLLNAIGNE 150 Query: 88 -----SRSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLLDF----ND 123 + A+S + +D + +L++DI L Sbjct: 151 ILKNIPNARVKYIPAESFINDFLDHLRLGEMEKFKKTYRSLDLLLIDDIQSLSGKKVATQ 210 Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 + F+ N++H +++T+ P L +R I+ PD + ++ Sbjct: 211 EEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQTITPPDFETRIAILQ 270 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVLKET 242 Y+ + + ++ E ++ + +A + IT +AAE ++ Sbjct: 271 SKTEHLGYNFQSDTLEYLAGQFDSNVRDLEGAINDITLIARVKKIKDITIDIAAEAIRAR 330 Query: 243 QQ 244 +Q Sbjct: 331 KQ 332 >gi|229551104|ref|ZP_04439829.1| DNA-directed DNA replication initiator protein [Lactobacillus rhamnosus LMS2-1] gi|229315565|gb|EEN81538.1| DNA-directed DNA replication initiator protein [Lactobacillus rhamnosus LMS2-1] Length = 468 Score = 92.5 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 80/239 (33%), Gaps = 28/239 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDKSRST 91 + D ++ + A + P + + G G GK+ L + Sbjct: 131 NPKYTFDRFVIGKGNQMAHAAALAVAEAPGTTYNPLFIYGGVGLGKTHLMQAIGNLVLEN 190 Query: 92 RFSNIAKSLDSILIDTR--------------------KPVLLEDI----DLLDFNDTQLF 127 + K + S +L++DI D + F Sbjct: 191 NPAANIKYVTSENFANDFINSIQTKQQEQFRQEYRNVDLLLVDDIQFFGDKEATQEE-FF 249 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++++ +++T+ P L SR V ++ PD + ++ Sbjct: 250 HTFNTLYENMKQIVLTSDRLPNEIPKLQERLVSRFNKGLSVDVTPPDLETRIAILRNKAN 309 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + I +YI ++E ++ E + ++ + + IT SLAA+ LK + D Sbjct: 310 AEDLSIPDDTLSYIAGQIESNVRDLEGALVRVQAFSTMKNEDITTSLAADALKALKLDD 368 >gi|257124815|ref|YP_003162929.1| chromosomal replication initiator protein DnaA [Leptotrichia buccalis C-1013-b] gi|257048754|gb|ACV37938.1| chromosomal replication initiator protein DnaA [Leptotrichia buccalis C-1013-b] Length = 451 Score = 92.5 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 79/236 (33%), Gaps = 31/236 (13%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDK---- 87 D+ +V + A + + P+ V + + G SG GK+ L ++ Sbjct: 109 NPKHRFDNFIVGENSKLAYNACLAVVNNPTPVYNPLFIYGSSGLGKTHLMQAVGNEILEN 168 Query: 88 --SRSTRFSNIAKSLDSIL--------------IDTRKPVLLEDID--------LLDFND 123 ++ +S + + +LL+DI + Sbjct: 169 NPNKRVYYSTSEEFANEFFKVLNGGRIQHFRDTFRALDVLLLDDIQFFEKVFGRGEGTVE 228 Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 + FH N + + ++M + P L SR + V+I P + ++ Sbjct: 229 EEFFHTFNKLQELGKQIIMISDKSPKEIKNLSKRLESRFLSGLTVEIQSPGFETRMMILK 288 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 M + I ID + YI + ++ E + ++ A IT L E+L Sbjct: 289 NMAKTQDIEIDDSILEYISDSLNTNVRELEGTLTNLNARAKLLNEKITLQLVQEML 344 >gi|199598234|ref|ZP_03211655.1| DNA replication ATPase initiation [Lactobacillus rhamnosus HN001] gi|258506996|ref|YP_003169747.1| chromosomal replication initiation protein [Lactobacillus rhamnosus GG] gi|258538192|ref|YP_003172691.1| chromosomal replication initiation protein [Lactobacillus rhamnosus Lc 705] gi|199590837|gb|EDY98922.1| DNA replication ATPase initiation [Lactobacillus rhamnosus HN001] gi|257146923|emb|CAR85896.1| Chromosomal replication initiator protein dnaA [Lactobacillus rhamnosus GG] gi|257149868|emb|CAR88840.1| Chromosomal replication initiator protein dnaA [Lactobacillus rhamnosus Lc 705] gi|259648366|dbj|BAI40528.1| chromosomal replication initiator protein DnaA [Lactobacillus rhamnosus GG] Length = 449 Score = 92.5 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 80/239 (33%), Gaps = 28/239 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDKSRST 91 + D ++ + A + P + + G G GK+ L + Sbjct: 112 NPKYTFDRFVIGKGNQMAHAAALAVAEAPGTTYNPLFIYGGVGLGKTHLMQAIGNLVLEN 171 Query: 92 RFSNIAKSLDSILIDTR--------------------KPVLLEDI----DLLDFNDTQLF 127 + K + S +L++DI D + F Sbjct: 172 NPAANIKYVTSENFANDFINSIQTKQQEQFRQEYRNVDLLLVDDIQFFGDKEATQEE-FF 230 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++++ +++T+ P L SR V ++ PD + ++ Sbjct: 231 HTFNTLYENMKQIVLTSDRLPNEIPKLQERLVSRFNKGLSVDVTPPDLETRIAILRNKAN 290 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + I +YI ++E ++ E + ++ + + IT SLAA+ LK + D Sbjct: 291 AEDLSIPDDTLSYIAGQIESNVRDLEGALVRVQAFSTMKNEDITTSLAADALKALKLDD 349 >gi|194097590|ref|YP_002000626.1| chromosomal replication initiation protein [Neisseria gonorrhoeae NCCP11945] gi|193932880|gb|ACF28704.1| putative chromosomal replication protein (DnaA) [Neisseria gonorrhoeae NCCP11945] gi|317165576|gb|ADV09117.1| chromosomal replication initiation protein [Neisseria gonorrhoeae TCDC-NG08107] Length = 502 Score = 92.5 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 39/255 (15%), Positives = 82/255 (32%), Gaps = 27/255 (10%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILV 70 K + D ++ EE + + D L+ A + P + L Sbjct: 146 AKARTDAQRDAEEARYEQTNLSPDYTFDTLVEGKGNRLAAAAAQAIAENPGQSYNPFFLY 205 Query: 71 GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKP 110 G +G GK+ L ++ R + + S Sbjct: 206 GSTGLGKTHLVQAVGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDL 265 Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 ++++DI + D + F++ N H L++T P L SR Sbjct: 266 LIIDDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLT 325 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 +++ P+ + ++ K I I+ + A +I + ++ E +++ + Sbjct: 326 LELEPPELEMRIAILQKKAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMN 385 Query: 228 MG-ITRSLAAEVLKE 241 I LA L++ Sbjct: 386 RPVIDIDLARTALQD 400 >gi|313893529|ref|ZP_07827099.1| chromosomal replication initiator protein DnaA [Veillonella sp. oral taxon 158 str. F0412] gi|313441972|gb|EFR60394.1| chromosomal replication initiator protein DnaA [Veillonella sp. oral taxon 158 str. F0412] Length = 525 Score = 92.1 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 44/280 (15%), Positives = 91/280 (32%), Gaps = 43/280 (15%) Query: 7 DYSFFVPDKQ-KNDQPKNKEEQLFFSFPR---CLGISRDDLLVHSAIEQ---AVRLIDSW 59 D P K + P + + + D+ + +A A + + + Sbjct: 150 DEPMVAPSKTVETTTPTLQSDNVPVDLSLSNLNPAYRFDNYVTGNANRIPFGAAQNVAEF 209 Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE----- 114 P + + GPSG GK+ L + + + + + SI + + +E Sbjct: 210 PGGDYNPLFIYGPSGLGKTHLMHAI---GNAIKEHHPHMKVMSITSENFMNIFVETLQRN 266 Query: 115 ----------DIDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 +ID+L +D T+LF+ N + + +++T+ T P Sbjct: 267 QGKLFRNTFRNIDVLMIDDIQFLESRESTKTELFNTFNELLNNNKQIVLTSDTMPNDMEQ 326 Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD-----RQIFIDKKLAAYIVQRMERS 208 L SR +A + + PD + + + R I ID Y+ + + Sbjct: 327 FEDRLRSRFQAGYIATMENPDLETRIAIFRSLLEREYKKNRVIRIDNDSINYVALQFSEN 386 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSL--AAEVLKETQQCD 246 + + K+ A + L + L + Sbjct: 387 VRVLQGAFTKLIGTASIDQRLESIDLEYTKQALAGLVHTE 426 >gi|190572092|ref|YP_001969937.1| chromosomal replication initiation protein [Stenotrophomonas maltophilia K279a] gi|254522083|ref|ZP_05134138.1| chromosomal replication initiator protein DnaA [Stenotrophomonas sp. SKA14] gi|226735852|sp|B2FUW1|DNAA_STRMK RecName: Full=Chromosomal replication initiator protein DnaA gi|190010014|emb|CAN85568.1| putative chromosomal replication initiator protein DnaA [Stenotrophomonas maltophilia K279a] gi|219719674|gb|EED38199.1| chromosomal replication initiator protein DnaA [Stenotrophomonas sp. SKA14] Length = 443 Score = 92.1 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 45/250 (18%), Positives = 88/250 (35%), Gaps = 27/250 (10%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKS 78 + E Q+ F+ + + + + A + ++L G +G GK+ Sbjct: 96 SSEPQVPFAGNLDNHYTFANFVEGRSNQLGLAAAFQAAQKPGDRAHNPLLLYGGTGLGKT 155 Query: 79 CLANIWSDKSRSTR-------------FSNIAKSLDSILIDT-------RKPVLLEDIDL 118 L + R FS + ++L +D +L++DI Sbjct: 156 HLMFAAGNAMRQANPGAKVLYLRSEQFFSAMIRALQEKTMDQFKRQFQQVDALLIDDIQF 215 Query: 119 LDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 D + FH N++ +++T +P L SRL V I PD Sbjct: 216 FAGKDRTQEEFFHTFNALFDGKQQIILTCDRYPREVEGLEARLKSRLAWGLSVAIEPPDF 275 Query: 176 DFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235 + +++ +R I +A I ++M ++ E ++ + A G IT A Sbjct: 276 ETRAAIVLAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLTARANFTGRAITTEFA 335 Query: 236 AEVLKETQQC 245 E L++ + Sbjct: 336 QETLRDLLRA 345 >gi|29840131|ref|NP_829237.1| chromosomal replication initiation protein [Chlamydophila caviae GPIC] gi|33301062|sp|Q823P0|DNAA1_CHLCV RecName: Full=Chromosomal replication initiator protein DnaA 1 gi|29834479|gb|AAP05115.1| chromosomal replication initiator protein DnaA [Chlamydophila caviae GPIC] Length = 450 Score = 92.1 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 40/262 (15%), Positives = 92/262 (35%), Gaps = 35/262 (13%) Query: 11 FVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQ---AVRLIDSWPSWPSRVV 67 P + + + EE F D+ + + + A I P + Sbjct: 93 IAPREPQESPAETFEESKDFELKLNAAYRFDNFIEGPSNQFVKSAAVGIAGRPGRSYNPL 152 Query: 68 ILVGPSGSGKSCLANIWSDKSRSTR-------------FSNIAKSLDSILID-------T 107 + G G GK+ L + R +++ + L ID + Sbjct: 153 FIHGGVGLGKTHLLHAVGHYVREHHKNLRVHCITTEAFINDLVQHLRLKSIDKMKNFYRS 212 Query: 108 RKPVLLEDI----DLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 +L++DI + +F + +IN + +++T+ P + + + Sbjct: 213 LDLLLVDDIQFLQNRQNFEEEFCNTFETLINL----NKQIVITSDKPPGQLKLS-ERIIA 267 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 R++ V + +PD + ++ + + I ++A YI + ++ E ++K+ Sbjct: 268 RMEWGLVAHVGIPDLETRVAILQHKAEQKGLHIPNEIAFYIADHIYGNVRQLEGAINKLT 327 Query: 221 NLALSRGMGITRSLAAEVLKET 242 G +T S+ + L+E Sbjct: 328 AYCRLFGKTLTESIVRDTLREL 349 >gi|87302489|ref|ZP_01085306.1| chromosomal replication initiation protein [Synechococcus sp. WH 5701] gi|87282833|gb|EAQ74790.1| chromosomal replication initiation protein [Synechococcus sp. WH 5701] Length = 484 Score = 92.1 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 76/232 (32%), Gaps = 26/232 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD----- 86 + +V A + P R + L G G GK+ L Sbjct: 146 NPRYVFNRFVVGPNSRMAHAAALAVAEAPGREFNPLFLCGGVGLGKTHLMQAIGHYRLEI 205 Query: 87 --KSRSTRFSNIAKSLDSILI-------------DTRKPVLLEDIDLLDFND---TQLFH 128 ++R S + D I +L++DI ++ + + FH Sbjct: 206 DPEARVFYVSTETFTNDLIQAIRKDGMQKFRDRYRAADLILVDDIQFIEGKEYTQEEFFH 265 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H+ +++ + P L SR + I PD + ++ K Sbjct: 266 TFNALHEAGRQIVIASDRPPSQIPRLQERLISRFSMGLIADIQAPDLETRMAILHKKAEQ 325 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 ++ + + L Y+ R ++ E + + A G+ +T A +L Sbjct: 326 ERMALPRDLIQYLAGRFTSNIRELEGALTRAVAFASITGLPMTVESVAPMLD 377 >gi|160901492|ref|YP_001567073.1| chromosomal replication initiator protein DnaA [Petrotoga mobilis SJ95] gi|160359136|gb|ABX30750.1| chromosomal replication initiator protein DnaA [Petrotoga mobilis SJ95] Length = 454 Score = 92.1 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 33/251 (13%), Positives = 80/251 (31%), Gaps = 33/251 (13%) Query: 22 KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAV----RLIDSWPSWPSRVVILVGPSGSGK 77 KN+ +L + D + ++ A + + + + G G GK Sbjct: 92 KNRPLKLS---EFNPEFTFDSFVTGNSNRIAYYSALEVCKNPGK--YNPLFIYGDVGLGK 146 Query: 78 SCLANI---------------------WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 + L + + ++ ++ ++ +L++D+ Sbjct: 147 THLLHAIGNFLMENAPDLKVKYVTAEDFMNQMMDGIRASDMENFRERFRRNVDFLLIDDV 206 Query: 117 DLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 L ++LFH NS+ +++ + P P L SR + + I P Sbjct: 207 QFLIGKNTVQSELFHTFNSLFNSRKQIVICSDRTPDELATFHPRLISRFEMGLITDIQAP 266 Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233 D + KM + + +A Y+ + ++ +L + + + G Sbjct: 267 DKATKYLIAKKMAQMISLQLTDDVAYYLAEHVDTNLRKLRGAIMNLLLQSQISGAPANIE 326 Query: 234 LAAEVLKETQQ 244 A ++ + Sbjct: 327 SAKTIVNSMMR 337 >gi|240079896|ref|ZP_04724439.1| chromosomal replication initiation protein [Neisseria gonorrhoeae FA19] Length = 478 Score = 92.1 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 39/255 (15%), Positives = 82/255 (32%), Gaps = 27/255 (10%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILV 70 K + D ++ EE + + D L+ A + P + L Sbjct: 122 AKARTDAQRDAEEARYEQTNLSPDYTFDTLVEGKGNRLAAAAAQAIAENPGQSYNPFFLY 181 Query: 71 GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKP 110 G +G GK+ L ++ R + + S Sbjct: 182 GSTGLGKTHLVQAVGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDL 241 Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 ++++DI + D + F++ N H L++T P L SR Sbjct: 242 LIIDDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLT 301 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 +++ P+ + ++ K I I+ + A +I + ++ E +++ + Sbjct: 302 LELEPPELEMRIAILQKKAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMN 361 Query: 228 MG-ITRSLAAEVLKE 241 I LA L++ Sbjct: 362 RPVIDIDLARTALQD 376 >gi|191636825|ref|YP_001985991.1| chromosomal replication initiation protein [Lactobacillus casei BL23] gi|226735820|sp|B3W6N4|DNAA_LACCB RecName: Full=Chromosomal replication initiator protein DnaA gi|190711127|emb|CAQ65133.1| Chromosomal replication initiator protein dnaA [Lactobacillus casei BL23] gi|327380862|gb|AEA52338.1| DNA-directed DNA replication initiator protein [Lactobacillus casei LC2W] gi|327384028|gb|AEA55502.1| DNA-directed DNA replication initiator protein [Lactobacillus casei BD-II] Length = 449 Score = 92.1 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 38/239 (15%), Positives = 84/239 (35%), Gaps = 28/239 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDKS--- 88 + D ++ + A + P + + G G GK+ L + Sbjct: 112 NPKYTFDRFVIGKGNQMAHAAALAVAEAPGTTYNPLFIYGGVGLGKTHLMQAIGNLVLDN 171 Query: 89 --RSTRFSNIAKSLDSILIDTR---------------KPVLLEDI----DLLDFNDTQLF 127 + +++ + I++ +L++DI D + F Sbjct: 172 NPAANIKYVTSENFANDFINSIQTKQQEQFRQEYRNVDLLLVDDIQFFGDKEATQEE-FF 230 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++++ +++T+ P L SR V ++ PD + ++ Sbjct: 231 HTFNTLYENMKQIVLTSDRLPNEIPKLQERLVSRFNKGLSVDVTPPDLETRIAILRNKAD 290 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + I +YI ++E ++ E + ++ + + IT SLAA+ LK + D Sbjct: 291 AEDLSIPDDTLSYIAGQIESNVRDLEGALVRVQAFSTMKNEDITTSLAADALKALKLDD 349 >gi|294792397|ref|ZP_06757544.1| ATPase involved in DNA replication initiation [Veillonella sp. 6_1_27] gi|294456296|gb|EFG24659.1| ATPase involved in DNA replication initiation [Veillonella sp. 6_1_27] Length = 474 Score = 92.1 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 37/241 (15%), Positives = 83/241 (34%), Gaps = 34/241 (14%) Query: 13 PDKQKNDQPKNKEEQLFFSFPR---CLGISRDDLLVHSAIEQ---AVRLIDSWPSWPSRV 66 P K P + + + D+ + +A A + + +P Sbjct: 106 PKKSTETMPTLQSDNVPVDLSLSNLNPAYRFDNYVTGNANRIPFGAAQNVAEFPGGDYNP 165 Query: 67 VILVGPSGSGKSCLANIW--SDKSRSTRFSNIAKSLDSIL------------------ID 106 + + GPSG GK+ L + + K ++ + ++ + Sbjct: 166 LFIYGPSGLGKTHLMHAIGNAIKENHPHMKVMSITSENFMNIFVETLQRNQGKLFRNTFR 225 Query: 107 TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 ++++DI L+ + T+LF+ N + + +++T+ T P L SR + Sbjct: 226 NIDVLMIDDIQFLESRESTKTELFNTFNELLNNNKQIVLTSDTMPNDMEQFEDRLRSRFQ 285 Query: 164 AATVVKISLPDDDFLEKVIVKMFAD-----RQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218 A + + PD + + + R I ID Y+ + ++ + K Sbjct: 286 AGYIATMENPDLETRIAIFRSLLEREYKKNRIIRIDNDSINYVALQFSENVRVLQGAFTK 345 Query: 219 M 219 + Sbjct: 346 L 346 >gi|254430118|ref|ZP_05043821.1| chromosomal replication initiator protein DnaA [Cyanobium sp. PCC 7001] gi|197624571|gb|EDY37130.1| chromosomal replication initiator protein DnaA [Cyanobium sp. PCC 7001] Length = 492 Score = 92.1 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 39/242 (16%), Positives = 80/242 (33%), Gaps = 26/242 (10%) Query: 29 FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWS 85 F+ + +V A + P R + + G G GK+ L Sbjct: 148 AFAPGLNPRYVFNRFVVGPNSRMAHAAALAVAEAPGREFNPLFICGGVGLGKTHLMQAIG 207 Query: 86 D-------KSRSTRFSNIAKSLDSILI-------------DTRKPVLLEDIDLLDFND-- 123 ++R S + D I +L++DI ++ + Sbjct: 208 HYRLEINPEARVFYVSTETFTNDLIQAIRKDGMQAFRDRYRAADLILVDDIQFIEGKEYT 267 Query: 124 -TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 + FH N++H+ +++ + P L SR + I PD + ++ Sbjct: 268 QEEFFHTFNALHEAGRQIVIASDRPPSQIPRLQERLISRFSMGLIADIQAPDLETRMAIL 327 Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 K Q+ + ++L +I R ++ E + + A G+ +T A +L Sbjct: 328 HKKAEQEQMALPRELIQFIAGRFTSNIRELEGALTRAVAFASITGLPMTVESVAPMLDPA 387 Query: 243 QQ 244 + Sbjct: 388 GR 389 >gi|325139557|gb|EGC62097.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis CU385] Length = 522 Score = 92.1 bits (228), Expect = 7e-17, Method: Composition-based stats. Identities = 39/255 (15%), Positives = 82/255 (32%), Gaps = 27/255 (10%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILV 70 K + D ++ EE + + D L+ A + P + L Sbjct: 166 AKARTDAQRDAEEARYEQTNLSPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSYNPFFLY 225 Query: 71 GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKP 110 G +G GK+ L ++ R + + S Sbjct: 226 GSTGLGKTHLVQAVGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDL 285 Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 ++++DI + D + F++ N H L++T P L SR Sbjct: 286 LIIDDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLT 345 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 +++ P+ + ++ K I I+ + A +I + ++ E +++ + Sbjct: 346 LELEPPELEMRIAILQKKAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVSASSRFMN 405 Query: 228 MG-ITRSLAAEVLKE 241 I LA L++ Sbjct: 406 RPVIDIDLARTALQD 420 >gi|322388480|ref|ZP_08062083.1| DNA-directed DNA replication initiator protein [Streptococcus infantis ATCC 700779] gi|321140793|gb|EFX36295.1| DNA-directed DNA replication initiator protein [Streptococcus infantis ATCC 700779] Length = 453 Score = 92.1 bits (228), Expect = 7e-17, Method: Composition-based stats. Identities = 36/242 (14%), Positives = 81/242 (33%), Gaps = 34/242 (14%) Query: 35 CLGISRDDLLVHSAI---EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK---- 87 + D+ + + A + P + + G G GK+ L N ++ Sbjct: 116 RDIYTFDNFIQGDGNIWAKSAALAVSEDPGLTYNPLFIYGGPGLGKTHLLNALGNEILKK 175 Query: 88 -SRSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLLDFN----DTQLF 127 + A+S + +D + +L++DI L N + F Sbjct: 176 NPNARVKYIPAESFINEFLDHLRLNDMDNFKKTYRSLDLLLIDDIQSLSGNKVQTQDEFF 235 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 + N +H + +++T+ P L +R I+ PD + ++ Sbjct: 236 NTFNKLHSNNKQIVLTSDRRPEQLENLPERLVTRFSWGLTTDITPPDFETRIAILNSKTE 295 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG----ITRSLAAEVLKETQ 243 D Y+ + + ++ E + + +L + IT +A+E ++ + Sbjct: 296 DLDYHFQPDTIEYLAGQFDSNVRELEGALKDI---SLMAKVKQINTITVDIASEAIRARK 352 Query: 244 QC 245 Q Sbjct: 353 QS 354 >gi|240112104|ref|ZP_04726594.1| chromosomal replication initiation protein [Neisseria gonorrhoeae MS11] gi|240122690|ref|ZP_04735646.1| chromosomal replication initiation protein [Neisseria gonorrhoeae PID332] Length = 479 Score = 92.1 bits (228), Expect = 7e-17, Method: Composition-based stats. Identities = 39/255 (15%), Positives = 82/255 (32%), Gaps = 27/255 (10%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILV 70 K + D ++ EE + + D L+ A + P + L Sbjct: 123 AKARTDAQRDAEEARYEQTNLSPDYTFDTLVEGKGNRLAAAAAQAIAENPGQSYNPFFLY 182 Query: 71 GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKP 110 G +G GK+ L ++ R + + S Sbjct: 183 GSTGLGKTHLVQAVGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDL 242 Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 ++++DI + D + F++ N H L++T P L SR Sbjct: 243 LIIDDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLT 302 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 +++ P+ + ++ K I I+ + A +I + ++ E +++ + Sbjct: 303 LELEPPELEMRIAILQKKAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMN 362 Query: 228 MG-ITRSLAAEVLKE 241 I LA L++ Sbjct: 363 RPVIDIDLARTALQD 377 >gi|268596039|ref|ZP_06130206.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae FA19] gi|268549827|gb|EEZ44846.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae FA19] Length = 518 Score = 91.7 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 39/255 (15%), Positives = 82/255 (32%), Gaps = 27/255 (10%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILV 70 K + D ++ EE + + D L+ A + P + L Sbjct: 162 AKARTDAQRDAEEARYEQTNLSPDYTFDTLVEGKGNRLAAAAAQAIAENPGQSYNPFFLY 221 Query: 71 GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKP 110 G +G GK+ L ++ R + + S Sbjct: 222 GSTGLGKTHLVQAVGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDL 281 Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 ++++DI + D + F++ N H L++T P L SR Sbjct: 282 LIIDDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLT 341 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 +++ P+ + ++ K I I+ + A +I + ++ E +++ + Sbjct: 342 LELEPPELEMRIAILQKKAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMN 401 Query: 228 MG-ITRSLAAEVLKE 241 I LA L++ Sbjct: 402 RPVIDIDLARTALQD 416 >gi|239998133|ref|ZP_04718057.1| chromosomal replication initiation protein [Neisseria gonorrhoeae 35/02] gi|240013314|ref|ZP_04720227.1| chromosomal replication initiation protein [Neisseria gonorrhoeae DGI18] gi|240015759|ref|ZP_04722299.1| chromosomal replication initiation protein [Neisseria gonorrhoeae FA6140] gi|240114850|ref|ZP_04728912.1| chromosomal replication initiation protein [Neisseria gonorrhoeae PID18] gi|240117052|ref|ZP_04731114.1| chromosomal replication initiation protein [Neisseria gonorrhoeae PID1] gi|240124878|ref|ZP_04737764.1| chromosomal replication initiation protein [Neisseria gonorrhoeae SK-92-679] gi|240127391|ref|ZP_04740052.1| chromosomal replication initiation protein [Neisseria gonorrhoeae SK-93-1035] Length = 478 Score = 91.7 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 39/255 (15%), Positives = 82/255 (32%), Gaps = 27/255 (10%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILV 70 K + D ++ EE + + D L+ A + P + L Sbjct: 122 AKARTDAQRDAEEARYEQTNLSPDYTFDTLVEGKGNRLAAAAAQAIAENPGQSYNPFFLY 181 Query: 71 GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKP 110 G +G GK+ L ++ R + + S Sbjct: 182 GSTGLGKTHLVQAVGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDL 241 Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 ++++DI + D + F++ N H L++T P L SR Sbjct: 242 LIIDDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLT 301 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 +++ P+ + ++ K I I+ + A +I + ++ E +++ + Sbjct: 302 LELEPPELEMRIAILQKKAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMN 361 Query: 228 MG-ITRSLAAEVLKE 241 I LA L++ Sbjct: 362 RPVIDIDLARTALQD 376 >gi|194363779|ref|YP_002026389.1| chromosomal replication initiation protein [Stenotrophomonas maltophilia R551-3] gi|226735851|sp|B4SU11|DNAA_STRM5 RecName: Full=Chromosomal replication initiator protein DnaA gi|194346583|gb|ACF49706.1| chromosomal replication initiator protein DnaA [Stenotrophomonas maltophilia R551-3] Length = 443 Score = 91.7 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 45/250 (18%), Positives = 88/250 (35%), Gaps = 27/250 (10%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKS 78 + E Q+ F+ + + + + A + ++L G +G GK+ Sbjct: 96 SSEPQVPFAGNLDNHYTFANFVEGRSNQLGLAAAFQAAQKPGDRAHNPLLLYGGTGLGKT 155 Query: 79 CLANIWSDKSRSTR-------------FSNIAKSLDSILIDT-------RKPVLLEDIDL 118 L + R FS + ++L +D +L++DI Sbjct: 156 HLMFAAGNAMRQANPGAKVLYLRSEQFFSAMIRALQEKTMDQFKRQFQQVDALLIDDIQF 215 Query: 119 LDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 D + FH N++ +++T +P L SRL V I PD Sbjct: 216 FAGKDRTQEEFFHTFNALFDGKQQIILTCDRYPREVEGLEARLKSRLAWGLSVAIEPPDF 275 Query: 176 DFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235 + +++ +R I +A I ++M ++ E ++ + A G IT A Sbjct: 276 ETRAAIVLAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLTARANFTGRAITTEFA 335 Query: 236 AEVLKETQQC 245 E L++ + Sbjct: 336 QETLRDLLRA 345 >gi|295321475|pdb|2KJQ|A Chain A, Solution Structure Of Protein Nmb1076 From Neisseria Meningi Northeast Structural Genomics Consortium Target Mr101b Length = 149 Score = 91.7 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 41/115 (35%), Gaps = 7/115 (6%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKS-----RSTRFSNIAKSLDSILIDTRKPVLLEDIDL 118 + + + G G+GKS L W ++ + + L + + + ++ ++ Sbjct: 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLTDAAFEA-EYLAVDQVEK 94 Query: 119 LDFNDTQL-FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 L + L F I N L+ + V DL +R+ V ++ Sbjct: 95 LGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTRMAYCLVYEVKP 149 >gi|171913561|ref|ZP_02929031.1| chromosomal replication initiation protein [Verrucomicrobium spinosum DSM 4136] Length = 526 Score = 91.7 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 38/242 (15%), Positives = 84/242 (34%), Gaps = 32/242 (13%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW------- 84 S + +V + + + P R + L G G GK+ L Sbjct: 189 NTRFSFNAFVVGPNCTYSCAVAKAVAEKPGRTYNPLFLHGAVGLGKTHLMQAIGREILHN 248 Query: 85 ----------SDKSRSTRFSNIAKSLDSILIDTRK---PVLLEDIDLLDF---NDTQLFH 128 S+ + + S S + +L++DI + FH Sbjct: 249 KPKKVVRYVTSEAFTNEYIEALRHSKVSAFRQKYRKVDVLLIDDIQFFAGKGSTQEEFFH 308 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N + +++T+ P L SR + +I PD + ++ + D Sbjct: 309 TFNDLFNSFKQIVLTSDRAPSEIKNLEARLVSRFEWGMATQIESPDLETRTAILRQKMVD 368 Query: 189 RQIFIDKKLAAYIVQRME---RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE-TQQ 244 + +D + +++ + + R L A V +++L G +T+++ +L++ ++ Sbjct: 369 WCVQVDDWVLSFLAENIRTNVRRLEGALMRVAA--HISLGNGGPLTQTIVETLLRDILEE 426 Query: 245 CD 246 D Sbjct: 427 PD 428 >gi|282851872|ref|ZP_06261234.1| chromosomal replication initiator protein DnaA [Lactobacillus gasseri 224-1] gi|282556979|gb|EFB62579.1| chromosomal replication initiator protein DnaA [Lactobacillus gasseri 224-1] Length = 332 Score = 91.7 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 38/239 (15%), Positives = 78/239 (32%), Gaps = 38/239 (15%) Query: 13 PDKQKNDQPKNKEEQLFF---------SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP 63 P++ +P+ K Q + D + + A + P Sbjct: 88 PERLVTPKPRIKTNQEILEDRRDEFAQDLQLNSKYTFDTFVQGEGNKLAAGAALAVADNP 147 Query: 64 SRV---VILVGPSGSGKSCLANIW-----SDKSRSTRFSNIAKSLDSILIDTRK------ 109 + + G G GK+ L ++K + +++ + I++ K Sbjct: 148 GSFYNPLFIFGGVGLGKTHLMQAIGHQMLAEKPHAKVVYIQSETFVNDFINSIKNKTQAE 207 Query: 110 ---------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 +L++DI + + FH +++ ++MT+ P Sbjct: 208 FRNKYRNCDLLLVDDIQFFSKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPELSER 267 Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---RSLVFAE 213 L SR V+I+ PD + ++ K + ID YI +++ R L A Sbjct: 268 LVSRFAWGLQVEITPPDLETRIAILRKKAETDGLAIDDSTLDYIASQVDTNIRELEGAL 326 >gi|254526330|ref|ZP_05138382.1| chromosomal replication initiator protein DnaA [Prochlorococcus marinus str. MIT 9202] gi|221537754|gb|EEE40207.1| chromosomal replication initiator protein DnaA [Prochlorococcus marinus str. MIT 9202] Length = 464 Score = 91.7 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 71/197 (36%), Gaps = 23/197 (11%) Query: 67 VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTRK 109 + + G G GK+ L ++ + S I + + + D + Sbjct: 161 LFICGGVGLGKTHLMQAIGHYRVEIDPEAKVKYVSTETFTNDVISGIRRDGMTAIRDKYR 220 Query: 110 ---PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 +L++DI L+ + + FH N++H+ S +++ + P L SR Sbjct: 221 NVDLILIDDIQFLEGKEYTQEEFFHTFNALHESGSQIVIASDRPPNQLSGIQERLISRFS 280 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 I PD + ++ K ++ + + L +I R ++ E + A Sbjct: 281 MGMTADIQPPDLETRTAILQKKAEQERMSLPRDLIQFIAGRFTSNIRELEGAFTRAVAFA 340 Query: 224 LSRGMGITRSLAAEVLK 240 G+ +T A +L Sbjct: 341 SITGLPMTVQSIAPMLD 357 >gi|157412981|ref|YP_001483847.1| chromosomal replication initiation protein [Prochlorococcus marinus str. MIT 9215] gi|167016903|sp|A8G3T0|DNAA_PROM2 RecName: Full=Chromosomal replication initiator protein DnaA gi|157387556|gb|ABV50261.1| chromosomal replication initiator protein DnaA [Prochlorococcus marinus str. MIT 9215] Length = 464 Score = 91.7 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 71/197 (36%), Gaps = 23/197 (11%) Query: 67 VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTRK 109 + + G G GK+ L ++ + S I + + + D + Sbjct: 161 LFICGGVGLGKTHLMQAIGHYRVEIDPEAKVKYVSTETFTNDVISGIRRDGMTAIRDKYR 220 Query: 110 ---PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 +L++DI L+ + + FH N++H+ S +++ + P L SR Sbjct: 221 KVDLILIDDIQFLEGKEYTQEEFFHTFNALHESGSQIVIASDRPPNQLSGIQERLISRFS 280 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 I PD + ++ K ++ + + L +I R ++ E + A Sbjct: 281 MGMTADIQPPDLETRTAILQKKAEQERMSLPRDLIQFIAGRFTSNIRELEGAFTRAVAFA 340 Query: 224 LSRGMGITRSLAAEVLK 240 G+ +T A +L Sbjct: 341 SITGLPMTVQSIAPMLD 357 >gi|123968156|ref|YP_001009014.1| chromosomal replication initiation protein [Prochlorococcus marinus str. AS9601] gi|166214692|sp|A2BQ46|DNAA_PROMS RecName: Full=Chromosomal replication initiator protein DnaA gi|123198266|gb|ABM69907.1| chromosomal replication initiator protein DnaA [Prochlorococcus marinus str. AS9601] Length = 464 Score = 91.7 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 71/197 (36%), Gaps = 23/197 (11%) Query: 67 VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTRK 109 + + G G GK+ L ++ + S I + + + D + Sbjct: 161 LFICGGVGLGKTHLMQAIGHYRVEIDPEAKVKYVSTETFTNDVISGIRRDGMTAIRDKYR 220 Query: 110 ---PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 +L++DI L+ + + FH N++H+ S +++ + P L SR Sbjct: 221 NVDLILIDDIQFLEGKEYTQEEFFHTFNALHESGSQIVIASDRPPNQLSGIQERLISRFS 280 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 I PD + ++ K ++ + + L +I R ++ E + A Sbjct: 281 MGMTADIQPPDLETRTAILQKKAEQERMSLPRDLIQFIAGRFTSNIRELEGAFTRAVAFA 340 Query: 224 LSRGMGITRSLAAEVLK 240 G+ +T A +L Sbjct: 341 SITGLPMTVQSIAPMLD 357 >gi|319949431|ref|ZP_08023492.1| chromosomal replication initiation protein [Dietzia cinnamea P4] gi|319436893|gb|EFV91952.1| chromosomal replication initiation protein [Dietzia cinnamea P4] Length = 501 Score = 91.7 bits (227), Expect = 8e-17, Method: Composition-based stats. Identities = 34/207 (16%), Positives = 75/207 (36%), Gaps = 23/207 (11%) Query: 63 PSRVVILVGPSGSGKSCLANIWSD------KSRSTRFSNIAKSLDSILIDTRKP------ 110 + + G SG GK+ L + + ++ + + + + R Sbjct: 192 AYNPLFIWGESGLGKTHLLHAIGHYSLRMYSEQKVKYVSTEEFTNDFINSVRDGRQNMFK 251 Query: 111 --------VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC 159 +L++DI L + + FH N+IH +++++ P L Sbjct: 252 KRYREADILLVDDIQFLIGKEQVQEEFFHTFNTIHNAQKQIVISSDRPPKQLQPLEDRLR 311 Query: 160 SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 +R + + I P+ + ++ K + + + I R++R++ E + ++ Sbjct: 312 TRFEWGLITDIQPPELETRIAILDKKAKSENYVVPRDVLELIATRVQRNIRELEGALIRV 371 Query: 220 DNLALSRGMGITRSLAAEVLKETQQCD 246 A G I LA VL++ D Sbjct: 372 VAFASLNGHEIDVPLAEIVLRDVVSDD 398 >gi|59800474|ref|YP_207186.1| putative chromosomal replication protein (DnaA) [Neisseria gonorrhoeae FA 1090] gi|254492913|ref|ZP_05106084.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae 1291] gi|260441335|ref|ZP_05795151.1| chromosomal replication initiation protein [Neisseria gonorrhoeae DGI2] gi|268593985|ref|ZP_06128152.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae 35/02] gi|268598163|ref|ZP_06132330.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae MS11] gi|268600507|ref|ZP_06134674.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae PID18] gi|268602740|ref|ZP_06136907.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae PID1] gi|268681289|ref|ZP_06148151.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae PID332] gi|268683460|ref|ZP_06150322.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae SK-92-679] gi|268685766|ref|ZP_06152628.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae SK-93-1035] gi|291044693|ref|ZP_06570402.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae DGI2] gi|293397795|ref|ZP_06642001.1| chromosomal replication initiator protein DnaA [Neisseria gonorrhoeae F62] gi|71151801|sp|Q5FAJ2|DNAA_NEIG1 RecName: Full=Chromosomal replication initiator protein DnaA gi|59717369|gb|AAW88774.1| putative chromosomal replication protein (DnaA) [Neisseria gonorrhoeae FA 1090] gi|226511953|gb|EEH61298.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae 1291] gi|268547374|gb|EEZ42792.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae 35/02] gi|268582294|gb|EEZ46970.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae MS11] gi|268584638|gb|EEZ49314.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae PID18] gi|268586871|gb|EEZ51547.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae PID1] gi|268621573|gb|EEZ53973.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae PID332] gi|268623744|gb|EEZ56144.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae SK-92-679] gi|268626050|gb|EEZ58450.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae SK-93-1035] gi|291011587|gb|EFE03583.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae DGI2] gi|291611741|gb|EFF40810.1| chromosomal replication initiator protein DnaA [Neisseria gonorrhoeae F62] Length = 518 Score = 91.7 bits (227), Expect = 8e-17, Method: Composition-based stats. Identities = 39/255 (15%), Positives = 82/255 (32%), Gaps = 27/255 (10%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILV 70 K + D ++ EE + + D L+ A + P + L Sbjct: 162 AKARTDAQRDAEEARYEQTNLSPDYTFDTLVEGKGNRLAAAAAQAIAENPGQSYNPFFLY 221 Query: 71 GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKP 110 G +G GK+ L ++ R + + S Sbjct: 222 GSTGLGKTHLVQAVGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDL 281 Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 ++++DI + D + F++ N H L++T P L SR Sbjct: 282 LIIDDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLT 341 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 +++ P+ + ++ K I I+ + A +I + ++ E +++ + Sbjct: 342 LELEPPELEMRIAILQKKAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMN 401 Query: 228 MG-ITRSLAAEVLKE 241 I LA L++ Sbjct: 402 RPVIDIDLARTALQD 416 >gi|304388449|ref|ZP_07370555.1| DNA-directed DNA replication initiator protein [Neisseria meningitidis ATCC 13091] gi|304337566|gb|EFM03729.1| DNA-directed DNA replication initiator protein [Neisseria meningitidis ATCC 13091] Length = 518 Score = 91.7 bits (227), Expect = 8e-17, Method: Composition-based stats. Identities = 39/255 (15%), Positives = 82/255 (32%), Gaps = 27/255 (10%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILV 70 K + D ++ EE + + D L+ A + P + L Sbjct: 162 AKARTDAQRDAEEARYEQTNLSPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSYNPFFLY 221 Query: 71 GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKP 110 G +G GK+ L ++ R + + S Sbjct: 222 GSTGLGKTHLVQAVGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDL 281 Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 ++++DI + D + F++ N H L++T P L SR Sbjct: 282 LIIDDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLT 341 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 +++ P+ + ++ K I I+ + A +I + ++ E +++ + Sbjct: 342 LELEPPELEMRIAILQKKAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMN 401 Query: 228 MG-ITRSLAAEVLKE 241 I LA L++ Sbjct: 402 RPVIDIDLARTALQD 416 >gi|167755165|ref|ZP_02427292.1| hypothetical protein CLORAM_00670 [Clostridium ramosum DSM 1402] gi|167705215|gb|EDS19794.1| hypothetical protein CLORAM_00670 [Clostridium ramosum DSM 1402] Length = 448 Score = 91.7 bits (227), Expect = 8e-17, Method: Composition-based stats. Identities = 31/211 (14%), Positives = 71/211 (33%), Gaps = 29/211 (13%) Query: 38 ISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST--- 91 ++ D+ +V S+ A L+ + P + + G GK+ L N + ++ Sbjct: 110 LTFDNFVVGSSNRMAQNAALLVSTNPGSNFNPLFIYSNPGLGKTHLLNAIGNYAKEVNPA 169 Query: 92 --------------RFSNIAKSLDSILIDTRK---PVLLEDIDLLDFNDTQ---LFHIIN 131 + + D K +L++DI L + FHI N Sbjct: 170 LRIRYITSKDFVDEVIGAMKGRDGDEIYDKYKNLDILLIDDIQFLFNKEKSSEIFFHIFN 229 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM---FAD 188 + + +++T+ P L SR + I P+ + ++ K + Sbjct: 230 ELINNNKQIVITSDKMPEELQGIESRLISRFNSGLSFGIDPPEFETARAILEKKIENLDN 289 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 + I + ++ + + E + ++ Sbjct: 290 PSLIIQDDVVDFMANHYCKDIRSLEGALKRL 320 >gi|124022539|ref|YP_001016846.1| chromosomal replication initiation protein [Prochlorococcus marinus str. MIT 9303] gi|166214690|sp|A2C7X1|DNAA_PROM3 RecName: Full=Chromosomal replication initiator protein DnaA gi|123962825|gb|ABM77581.1| chromosomal replication initiator protein DnaA [Prochlorococcus marinus str. MIT 9303] Length = 463 Score = 91.7 bits (227), Expect = 8e-17, Method: Composition-based stats. Identities = 40/250 (16%), Positives = 82/250 (32%), Gaps = 28/250 (11%) Query: 21 PKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGK 77 P + ++ +R +V A + P R + + G G GK Sbjct: 113 PSSGPRRILPGLNLRYVFNR--FVVGPNSRMAHAAALAVAEAPGREFNPLFICGGVGLGK 170 Query: 78 SCLANIWSD-------KSRSTRFSNIAKSLDSILI-------------DTRKPVLLEDID 117 + L +++ S + D I +L++DI Sbjct: 171 THLMQAIGHYRLEINPEAKVAYVSTETFTNDLIQAIRKDGMQAFRDRYRATDLILVDDIQ 230 Query: 118 LLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 ++ + + FH N++H+ +++ + P L SR + I PD Sbjct: 231 FIEGKEYTQEEFFHTFNALHEAGRQIVIASDRPPSQIPKLQERLISRFSMGLIADIQSPD 290 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234 + ++ K ++ + + L YI R ++ E + + A G+ +T Sbjct: 291 LETRMAILQKKAEQERMMLPRDLIQYIAGRFTSNIRELEGALTRAVAFASITGLPMTVES 350 Query: 235 AAEVLKETQQ 244 A +L Q Sbjct: 351 VAPMLDPNGQ 360 >gi|254670914|emb|CBA07496.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis alpha153] Length = 518 Score = 91.7 bits (227), Expect = 8e-17, Method: Composition-based stats. Identities = 39/255 (15%), Positives = 82/255 (32%), Gaps = 27/255 (10%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILV 70 K + D ++ EE + + D L+ A + P + L Sbjct: 162 AKARTDAQRDAEEARYEQTNLSPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSYNPFFLY 221 Query: 71 GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKP 110 G +G GK+ L ++ R + + S Sbjct: 222 GSTGLGKTHLVQAVGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDL 281 Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 ++++DI + D + F++ N H L++T P L SR Sbjct: 282 LIIDDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLT 341 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 +++ P+ + ++ K I I+ + A +I + ++ E +++ + Sbjct: 342 LELEPPELEMRIAILQKKAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMN 401 Query: 228 MG-ITRSLAAEVLKE 241 I LA L++ Sbjct: 402 RPVIDIDLARTALQD 416 >gi|318040987|ref|ZP_07972943.1| chromosomal replication initiation protein [Synechococcus sp. CB0101] Length = 478 Score = 91.7 bits (227), Expect = 8e-17, Method: Composition-based stats. Identities = 40/259 (15%), Positives = 83/259 (32%), Gaps = 32/259 (12%) Query: 12 VPDKQKNDQPKNK----EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV- 66 +P + + +L +R +V A + P R Sbjct: 114 LPGGAASASQRLPTGETPRKLAPGLNPRYVFNR--FVVGPNSRMAHAAALAVAEAPGREF 171 Query: 67 --VILVGPSGSGKSCLANIWSD-------KSRSTRFSNIAKSLDSILI------------ 105 + + G G GK+ L ++R S + D I Sbjct: 172 NPLFICGGVGLGKTHLMQAIGHYRLEIDPEARVAYVSTETFTNDLIQAIRKDGMQKFRDR 231 Query: 106 -DTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161 +L++DI ++ + + FH N++H+ +++ + P L SR Sbjct: 232 YRAADLILVDDIQFIEGKEYTQEEFFHTFNALHEAGRQIVIASDRPPSQIPRLQERLISR 291 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 + I PD + ++ K ++ + + L Y+ R ++ E + + Sbjct: 292 FSMGLIADIQAPDLETRMAILHKKAEHERVNLPRDLIQYLAGRFTSNIRELEGALTRAVA 351 Query: 222 LALSRGMGITRSLAAEVLK 240 A G+ +T A +L Sbjct: 352 FASITGLPMTVESVAPMLD 370 >gi|126695929|ref|YP_001090815.1| chromosomal replication initiation protein [Prochlorococcus marinus str. MIT 9301] gi|166214688|sp|A3PBT9|DNAA_PROM0 RecName: Full=Chromosomal replication initiator protein DnaA gi|126542972|gb|ABO17214.1| chromosomal replication initiator protein DnaA [Prochlorococcus marinus str. MIT 9301] Length = 464 Score = 91.7 bits (227), Expect = 8e-17, Method: Composition-based stats. Identities = 42/255 (16%), Positives = 84/255 (32%), Gaps = 29/255 (11%) Query: 12 VPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VI 68 P+ + KN+ + R +V A + P R + Sbjct: 106 FPNNSQEISSKNRSKN-PNGLNLRYVFKR--FVVGPNSRLAHAAALAVAESPGREFNPLF 162 Query: 69 LVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTRK-- 109 + G G GK+ L ++ + S I + + + D + Sbjct: 163 ICGGVGLGKTHLMQAIGHYRVEIDPEAKVKYVSTETFTNDVISGIRRDGMTAIRDKYRNV 222 Query: 110 -PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 +L++DI L+ + + FH N++H+ S +++ + P L SR Sbjct: 223 DLILIDDIQFLEGKEYTQEEFFHTFNALHESGSQIVIASDRPPNQLSGIQERLISRFSMG 282 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 I PD + ++ K + + + L +I R ++ E + A Sbjct: 283 MTADIQPPDLETRTAILQKKAEQESMSLPRDLIQFIAGRFTSNIRELEGAFTRAVAFASI 342 Query: 226 RGMGITRSLAAEVLK 240 G+ +T A +L Sbjct: 343 TGLPMTVQSIAPMLD 357 >gi|326560701|gb|EGE11069.1| chromosomal replication initiator protein DnaA [Moraxella catarrhalis 46P47B1] gi|326562316|gb|EGE12642.1| chromosomal replication initiator protein DnaA [Moraxella catarrhalis 103P14B1] gi|326563092|gb|EGE13365.1| chromosomal replication initiator protein DnaA [Moraxella catarrhalis 12P80B1] gi|326571725|gb|EGE21738.1| chromosomal replication initiator protein DnaA [Moraxella catarrhalis BC8] gi|326571820|gb|EGE21826.1| chromosomal replication initiator protein DnaA [Moraxella catarrhalis BC7] gi|326574361|gb|EGE24304.1| chromosomal replication initiator protein DnaA [Moraxella catarrhalis CO72] gi|326575520|gb|EGE25445.1| chromosomal replication initiator protein DnaA [Moraxella catarrhalis 101P30B1] gi|326578061|gb|EGE27921.1| chromosomal replication initiator protein DnaA [Moraxella catarrhalis O35E] Length = 467 Score = 91.7 bits (227), Expect = 9e-17, Method: Composition-based stats. Identities = 33/245 (13%), Positives = 82/245 (33%), Gaps = 32/245 (13%) Query: 32 FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV----VILVGPSGSGKSCLANIWSDK 87 P G + D + + A + S+ + + G SG GK+ L + + + Sbjct: 125 LPIDPGFTFDVFIKGKSNASAYNACNELSRKESKHNYGPIFIYGSSGLGKTHLMHAMAHR 184 Query: 88 SRSTRFSNIAKSLDSIL------------------IDTRKPVLLEDIDLLDFNDT----- 124 + + D I ++++D+ ++ + Sbjct: 185 YQKYGKQFFYFTKDHFYKITLEAFRTNDIVQMEKEICQADLLIIDDVHMVSGSKAPKVTE 244 Query: 125 ---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 +LF S +++ + P SRL + + I PD + ++ Sbjct: 245 ILMKLFDTF-SAGNTQKQVVLASDRPPSQMTSFGERYISRLSSCLQLSIEPPDMEMRIQI 303 Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNLALSRGMGITRSLAAEVLK 240 + K + + ++ A Y+ Q + + E + ++ + + R ++ L + +K Sbjct: 304 LEKKAQMLNLLLPRECALYMAQNLPPDVRGLEGALKRVQLSATILRNEPVSLPLVKDAIK 363 Query: 241 ETQQC 245 + Q Sbjct: 364 DQVQA 368 >gi|239616412|ref|YP_002939734.1| chromosomal replication initiator protein DnaA [Kosmotoga olearia TBF 19.5.1] gi|259645253|sp|C5CH91|DNAA_KOSOT RecName: Full=Chromosomal replication initiator protein DnaA gi|239505243|gb|ACR78730.1| chromosomal replication initiator protein DnaA [Kosmotoga olearia TBF 19.5.1] Length = 447 Score = 91.7 bits (227), Expect = 9e-17, Method: Composition-based stats. Identities = 34/233 (14%), Positives = 78/233 (33%), Gaps = 28/233 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK---- 87 + ++ +V + I P + + G G GK+ L + K Sbjct: 105 NANYTFENFVVGPENRVLYEVSLEISRNPGRYNPFFV-YGMVGLGKTHLLQAIAHKIMEL 163 Query: 88 ---------SRSTRFSNIAKSL--------DSILIDTRKPVLLEDIDLL---DFNDTQLF 127 + +++ S+ +L++DI L + +LF Sbjct: 164 HPEMRVLYITSEQFMNDMIDSIKYGSVRDFREHYRKKADVLLIDDIQFLIGKNGVQKELF 223 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N ++ +++ + P L SR + V++I P+ D K+ K Sbjct: 224 HTFNELYDAGKQIVICSDRNPEELNGFHDRLVSRFQMGMVMEICPPEKDTRFKIAKKFAE 283 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + +A + ++ +L ++ K+ + I +L ++L Sbjct: 284 RESVSLPDDVAQLLADSVDGNLRILRGVIIKLIVQSSINKERIGAALTNQILA 336 >gi|72381841|ref|YP_291196.1| chromosomal replication initiation protein [Prochlorococcus marinus str. NATL2A] gi|72001691|gb|AAZ57493.1| chromosomal replication initiator protein DnaA [Prochlorococcus marinus str. NATL2A] Length = 466 Score = 91.7 bits (227), Expect = 9e-17, Method: Composition-based stats. Identities = 38/228 (16%), Positives = 76/228 (33%), Gaps = 26/228 (11%) Query: 43 LLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD-----KSRSTRFS 94 +V A + P R + + G G GK+ L + Sbjct: 136 FVVGPNSRMAHAAAMAVAEAPGREFNPLFICGGVGLGKTHLMQSIGHYRLEIDPGAKVAY 195 Query: 95 NIAKSLDSILIDT---------------RKPVLLEDIDLLDFND---TQLFHIINSIHQY 136 ++ + LI +L++DI ++ + + FH N++H+ Sbjct: 196 VSTETFTNDLIVAIRKDGMQAFRNRYREADLILVDDIQFIEGKEYTQEEFFHTFNALHEA 255 Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196 +++T+ P L SR + I PD + ++ K ++ + + Sbjct: 256 GRQIVLTSDRPPSQIPRLQERLISRFSMGLIADIQAPDLETRMAILQKKAEHERMRLPRD 315 Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 L +I R ++ E + A G+ +T A +L T Q Sbjct: 316 LIQFIAGRFTSNIRELEGAFTRAVAFASITGLPMTVESVAPMLDPTGQ 363 >gi|170746452|ref|YP_001752712.1| chromosomal replication initiation protein [Methylobacterium radiotolerans JCM 2831] gi|170652974|gb|ACB22029.1| chromosomal replication initiator protein DnaA [Methylobacterium radiotolerans JCM 2831] Length = 498 Score = 91.7 bits (227), Expect = 9e-17, Method: Composition-based stats. Identities = 34/240 (14%), Positives = 82/240 (34%), Gaps = 30/240 (12%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPS-----WPSRVVILVGPSGSGKSCLANIWSDK 87 P ++ ++ + A + + + L G GK+ L + Sbjct: 157 PLDARLTFASFVIGRSNALAHAAAERVANHLGEGALYNPLYLHAGVGLGKTHLLHGIGHA 216 Query: 88 SRSTRFSNIAKSLDSIL------------------IDTRKPVLLEDIDLLDFN--DTQLF 127 +R I + D + + ++L+D+ + + Sbjct: 217 AREAGRRVIYLTADRFMYGFVNALKTQSALAYKERLRGIDLLILDDVQFIQGKSIQAEFG 276 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI-VKMF 186 H IN++ +++ + P + SRL VV+I+ D+ ++ ++ Sbjct: 277 HTINALIDAGRQVVVASDRPPTELEALDERVRSRLGGGLVVEITALDEALRVSILSARLA 336 Query: 187 ADR----QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 A R + ++AAY+ + + + E V+++ A G +T A +++ Sbjct: 337 AVRASHPGFDVSPQVAAYVARAITANGRDLEGAVNRLLAHATLTGTAVTMETAESAIRDL 396 >gi|325969850|ref|YP_004246041.1| Chromosomal replication initiator protein dnaA [Spirochaeta sp. Buddy] gi|324025088|gb|ADY11847.1| Chromosomal replication initiator protein dnaA [Spirochaeta sp. Buddy] Length = 473 Score = 91.7 bits (227), Expect = 9e-17, Method: Composition-based stats. Identities = 37/231 (16%), Positives = 78/231 (33%), Gaps = 26/231 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLAN-----IWSD 86 + ++ A I P ++ G G GK+ L N I ++ Sbjct: 133 NPSYDFGNFVIGDNSAFAYNASLAIAKNPGSSYNPCLIYGGVGLGKTHLLNSIGNFIINN 192 Query: 87 KSRSTRFSNIAKSLDSILIDTRKP---------------VLLEDIDLLDFND---TQLFH 128 A+ + I++ +L++DI L D +LFH Sbjct: 193 TPELKVMYVTAEMFTNEFIESIGSQKTQHFKNKFRKVDVLLIDDIHFLQGKDSTQEELFH 252 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++++ ++ T L SR + V + P+ + ++ K + Sbjct: 253 TFNNLYESKKQMVFTCDRPISELKNITDRLSSRFERGLNVDLQPPNYETRMAILKKKLIE 312 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 R + +++ YI + ++ E + K+ + I+ A E+L Sbjct: 313 RGSSMSEEILNYIATNVCTNVRDLESSLTKLIAYSELLSQEISFDKAKELL 363 >gi|294794203|ref|ZP_06759339.1| ATPase involved in DNA replication initiation [Veillonella sp. 3_1_44] gi|294454533|gb|EFG22906.1| ATPase involved in DNA replication initiation [Veillonella sp. 3_1_44] Length = 474 Score = 91.7 bits (227), Expect = 9e-17, Method: Composition-based stats. Identities = 37/241 (15%), Positives = 83/241 (34%), Gaps = 34/241 (14%) Query: 13 PDKQKNDQPKNKEEQLFFSFPR---CLGISRDDLLVHSAIEQ---AVRLIDSWPSWPSRV 66 P K P + + + D+ + +A A + + +P Sbjct: 106 PKKPTETMPTLQSDNVPVDLSLSNLNPAYRFDNYVTGNANRIPFGAAQNVAEFPGGDYNP 165 Query: 67 VILVGPSGSGKSCLANIW--SDKSRSTRFSNIAKSLDSIL------------------ID 106 + + GPSG GK+ L + + K ++ + ++ + Sbjct: 166 LFIYGPSGLGKTHLMHAIGNAIKENHPHMKVMSITSENFMNIFVETLQRNQGKLFRNTFR 225 Query: 107 TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 ++++DI L+ + T+LF+ N + + +++T+ T P L SR + Sbjct: 226 NIDVLMIDDIQFLESRESTKTELFNTFNELLNNNKQIVLTSDTMPNDMEQFEDRLRSRFQ 285 Query: 164 AATVVKISLPDDDFLEKVIVKMFAD-----RQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218 A + + PD + + + R I ID Y+ + ++ + K Sbjct: 286 AGYIATMENPDLETRIAIFRSLLEREYKKNRIIRIDNDSINYVALQFSENVRVLQGAFTK 345 Query: 219 M 219 + Sbjct: 346 L 346 >gi|238018223|ref|ZP_04598649.1| hypothetical protein VEIDISOL_00047 [Veillonella dispar ATCC 17748] gi|237864694|gb|EEP65984.1| hypothetical protein VEIDISOL_00047 [Veillonella dispar ATCC 17748] Length = 525 Score = 91.4 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 41/277 (14%), Positives = 91/277 (32%), Gaps = 37/277 (13%) Query: 7 DYSFFVPDKQ-KNDQPKNKEEQLFFSFPR---CLGISRDDLLVHSAIEQ---AVRLIDSW 59 D P K + P + + + D+ + +A A + + + Sbjct: 150 DEPMVAPSKTVETTTPTLQSDNVPVDLSLSNLNPAYRFDNYVTGNANRIPFGAAQNVAEY 209 Query: 60 PSWPSRVVILVGPSGSGKSCLANIW--SDKSRSTRFSNIAKSLDSIL------------- 104 P + + GPSG GK+ L + + K ++ + ++ + Sbjct: 210 PGGDYNPLFIYGPSGLGKTHLMHAIGNAIKENHPHMKVMSITSENFMNIFVETLQRNQGK 269 Query: 105 -----IDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156 ++++DI L+ + T+LF+ N + + +++T+ T P Sbjct: 270 LFRNTFRNIDVLMIDDIQFLESRESTKTELFNTFNELLNNNKQIVLTSDTMPNDMEQFED 329 Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFAD-----RQIFIDKKLAAYIVQRMERSLVF 211 L SR +A + + PD + + + R I ID Y+ + ++ Sbjct: 330 RLRSRFQAGYIATMENPDLETRIAIFRSLLEREYKKNRVIRIDNDSINYVALQFSENVRV 389 Query: 212 AEKLVDKMDNLALSRGMGITRSL--AAEVLKETQQCD 246 + K+ A + L + L + Sbjct: 390 LQGAFTKLIGTASIDQRLESIDLEYTKQALAGLVHTE 426 >gi|303228570|ref|ZP_07315397.1| chromosomal replication initiator protein DnaA [Veillonella atypica ACS-134-V-Col7a] gi|303230659|ref|ZP_07317409.1| chromosomal replication initiator protein DnaA [Veillonella atypica ACS-049-V-Sch6] gi|302514714|gb|EFL56706.1| chromosomal replication initiator protein DnaA [Veillonella atypica ACS-049-V-Sch6] gi|302516749|gb|EFL58664.1| chromosomal replication initiator protein DnaA [Veillonella atypica ACS-134-V-Col7a] Length = 539 Score = 91.4 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 44/255 (17%), Positives = 91/255 (35%), Gaps = 46/255 (18%) Query: 19 DQPKNKEEQ-----------LFFSFPR---CLGISRDDLLVHSAIEQ---AVRLIDSWPS 61 D+P EQ + G D+ + +A A + + P Sbjct: 166 DEPMFPVEQPQMVQTLQSTDIPIDLSSSQLNSGYRFDNYITGNANRIPFGAAQNVSEHPG 225 Query: 62 WPSRVVILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSIL 104 + + GPSG GK+ L + S+K + +I K + Sbjct: 226 GDYNPLFIYGPSGLGKTHLMHAIGNAIVERYPNLKVMCTTSEKFMNLFIESIRKRQGELF 285 Query: 105 IDT---RKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158 +T +L++DI L+ + T+ F+ N + + +++T+ T P L Sbjct: 286 RNTFRNIDVLLIDDIQFLENKEGTKTEFFNTFNELLDNNKQIVLTSDTMPNDMDQFEERL 345 Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFA-----DRQIFIDKKLAAYIVQRMERSLVFAE 213 SR +A V + PD + ++ + +R + ID Y+ + + ++ + Sbjct: 346 RSRFQAGYVATMENPDLETRIAILKALVEKENNKNRNLVIDNDAINYVALQFDENIRVLQ 405 Query: 214 KLVDKM-DNLALSRG 227 +K+ +L + Sbjct: 406 GAFNKLIGTASLEQR 420 >gi|218283256|ref|ZP_03489317.1| hypothetical protein EUBIFOR_01906 [Eubacterium biforme DSM 3989] gi|218216011|gb|EEC89549.1| hypothetical protein EUBIFOR_01906 [Eubacterium biforme DSM 3989] Length = 452 Score = 91.4 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 39/240 (16%), Positives = 84/240 (35%), Gaps = 35/240 (14%) Query: 35 CLGISRDDLLVHSAIEQAVRLI----DSWPSWPSRVVILVGPSGSGKSCLANI-----WS 85 + ++ + ++ +A S ++L G SG GK+ L + Sbjct: 108 NPSYTFENFVEGNSNAEAYAACLACCTQTTSHLFNPLMLYGNSGLGKTHLLHAMGNYLAK 167 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKP--------------------VLLEDIDLL---DFN 122 + + L S+LI+ K L++DI L + Sbjct: 168 EHPECKVIYMYSGDLVSLLIEAMKTKNVHGNTVERVKEQLLDCDYFLIDDIQNLQQHSSS 227 Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 F + N + Q ++ +++T+ P L SR + + IS P+ + + ++ Sbjct: 228 QEIFFTVYNQLIQKNTQIIITSDMHPSEISGLQSRLISRFVSGLTISISKPEFETSKAIL 287 Query: 183 VKMFADR--QIFIDKKLAAYIVQRMERSLVFAEKLVDKMD-NLALSRGMGITRSLAAEVL 239 K R + + + + Y+ + + E ++++ N L I A +VL Sbjct: 288 KKKIEGREEGVNMSEDVIDYLAGKYSNDVRNLEGTLNRLIFNATLFNPDVIDMDFARKVL 347 >gi|161869312|ref|YP_001598479.1| chromosomal replication initiation protein [Neisseria meningitidis 053442] gi|161594865|gb|ABX72525.1| chromosomal replication initiator protein [Neisseria meningitidis 053442] Length = 468 Score = 91.4 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 39/255 (15%), Positives = 82/255 (32%), Gaps = 27/255 (10%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILV 70 K + D ++ EE + + D L+ A + P + L Sbjct: 112 AKARTDAQRDAEEARYEQTNLSPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSYNPFFLY 171 Query: 71 GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKP 110 G +G GK+ L ++ R + + S Sbjct: 172 GSTGLGKTHLVQAIGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDL 231 Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 ++++DI + D + F++ N H L++T P L SR Sbjct: 232 LIIDDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLT 291 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 +++ P+ + ++ K I I+ + A +I + ++ E +++ + Sbjct: 292 LELEPPELEMRIAILQKKAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMN 351 Query: 228 MG-ITRSLAAEVLKE 241 I LA L++ Sbjct: 352 RPVIDIDLARTALQD 366 >gi|78778950|ref|YP_397062.1| chromosomal replication initiation protein [Prochlorococcus marinus str. MIT 9312] gi|123755112|sp|Q31BW9|DNAA_PROM9 RecName: Full=Chromosomal replication initiator protein DnaA gi|78712449|gb|ABB49626.1| chromosomal replication initiator protein DnaA [Prochlorococcus marinus str. MIT 9312] Length = 464 Score = 91.4 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 71/197 (36%), Gaps = 23/197 (11%) Query: 67 VILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTRK 109 + + G G GK+ L ++ + S I + + + D + Sbjct: 161 LFICGGVGLGKTHLMQAIGHYRVEIDPEAKVKYVSTETFTNDVISGIRRDGMTAIRDKYR 220 Query: 110 ---PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 +L++DI L+ + + FH N++H+ S +++ + P L SR Sbjct: 221 NVDLILIDDIQFLEGKEYTQEEFFHTFNALHESGSQIVIASDRPPNQLSGIQERLISRFS 280 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 I PD + ++ K ++ + + L +I R ++ E + A Sbjct: 281 MGMTADIQPPDLETRTAILQKKAEQERMNLPRDLIQFIAGRFTSNIRELEGAFTRAVAFA 340 Query: 224 LSRGMGITRSLAAEVLK 240 G+ +T A +L Sbjct: 341 SITGLPMTVQSIAPMLD 357 >gi|320332619|ref|YP_004169330.1| Chromosomal replication initiator protein dnaA [Deinococcus maricopensis DSM 21211] gi|319753908|gb|ADV65665.1| Chromosomal replication initiator protein dnaA [Deinococcus maricopensis DSM 21211] Length = 455 Score = 91.4 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 36/258 (13%), Positives = 94/258 (36%), Gaps = 35/258 (13%) Query: 20 QPKNKEEQLFFSFPR---------CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---V 67 P+ + P + ++ +V A + P R + Sbjct: 90 PPRTRALPGPAPLPVGSGENRKSLNPKYTFENFVVGPNNNLAHAAALAVAESPGRAYNPL 149 Query: 68 ILVGPSGSGKSCLANI----WSDKSRSTRFSNIA-KSLDSILIDTRK------------- 109 + G G GK+ L + +++ R ++ +S + LI+ + Sbjct: 150 FIYGDVGLGKTHLMHAVGHYIAERYPDKRIEYLSTESFTNELINAIRDDKMTQFRNKYRS 209 Query: 110 --PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164 +L++DI L + + FH N++++ +++++ P L SR + Sbjct: 210 VDLLLVDDIQFLAGKERTQEEFFHTFNALYENHKQIILSSDRPPKDIQTLEGRLRSRFEW 269 Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 + I P+ + ++ R I I + + + +++ ++ E + ++ + Sbjct: 270 GLITDIQSPEFETRVAILKMNAEHRHIDIPQDVLEQVARQVTSNIRELEGALMRVVAFSS 329 Query: 225 SRGMGITRSLAAEVLKET 242 + +R++AA+ L + Sbjct: 330 LNNVPFSRAVAAKALSDV 347 >gi|262363789|gb|ACY60510.1| chromosomal replication initiator protein [Yersinia pestis D106004] Length = 231 Score = 91.4 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 61/139 (43%), Gaps = 3/139 (2%) Query: 107 TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 + +L++DI + + FH N++ + + +++T+ +P L SR Sbjct: 15 SVDALLIDDIPFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFG 74 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 V I P+ + +++K + I + ++A +I +R+ ++ E ++++ A Sbjct: 75 WGLTVAIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANA 134 Query: 224 LSRGMGITRSLAAEVLKET 242 G IT E L++ Sbjct: 135 NFTGRAITIDFVREALRDL 153 >gi|154148526|ref|YP_001405623.1| chromosomal replication initiator protein DnaA [Campylobacter hominis ATCC BAA-381] gi|153804535|gb|ABS51542.1| chromosomal replication initiator protein DnaA [Campylobacter hominis ATCC BAA-381] Length = 437 Score = 91.4 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 72/235 (30%), Gaps = 34/235 (14%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLAN---IWSDKSRS 90 S ++ +V + A + P + + G SG GK+ L + K Sbjct: 104 SFSFENFIVGDSNRFAYTCAKAVAENPGERYNPLFIYGNSGLGKTHLLQSIGNYCIKDGK 163 Query: 91 TRFSNIAKSLDSILIDTRKPVLLEDIDL--------------------LDFNDTQLFHII 130 ++ + L + + ++ LFH Sbjct: 164 FVICVTSEQFANELKFHIETNSTDKFKEKYRTCDLLLIDDIQLLSTRKAAIDE--LFHTF 221 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N + + +++T P L SR ++ V I+ PD + ++ K Sbjct: 222 NELKNKNCQIVITNDKPPQLLKDFESRLVSRFESGLVANINPPDLNTKIGILTKKAGLNG 281 Query: 191 IFIDKKLAAYIVQRME---RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + ++K + YI + R + + +L I+ LK++ Sbjct: 282 LTLNKDVIEYIAANLGDNVREMEGILTQIRA--YQSLIN-TEISLDFVKANLKDS 333 >gi|240120386|ref|ZP_04733348.1| chromosomal replication initiation protein [Neisseria gonorrhoeae PID24-1] Length = 468 Score = 91.4 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 39/255 (15%), Positives = 82/255 (32%), Gaps = 27/255 (10%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILV 70 K + D ++ EE + + D L+ A + P + L Sbjct: 112 AKARTDAQRDAEEARYEQTNLSPDYTFDTLVEGKGNRLAAAAAQAIAENPGQSYNPFFLY 171 Query: 71 GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKP 110 G +G GK+ L ++ R + + S Sbjct: 172 GSTGLGKTHLVQAVGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDL 231 Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 ++++DI + D + F++ N H L++T P L SR Sbjct: 232 LIIDDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLT 291 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 +++ P+ + ++ K I I+ + A +I + ++ E +++ + Sbjct: 292 LELEPPELEMRIAILQKKAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMN 351 Query: 228 MG-ITRSLAAEVLKE 241 I LA L++ Sbjct: 352 RPVIDIDLARTALQD 366 >gi|148244170|ref|YP_001218864.1| chromosomal replication initiator protein DnaA [Candidatus Vesicomyosocius okutanii HA] gi|146325997|dbj|BAF61140.1| chromosomal replication initiator protein DnaA [Candidatus Vesicomyosocius okutanii HA] Length = 430 Score = 91.4 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 39/217 (17%), Positives = 86/217 (39%), Gaps = 31/217 (14%) Query: 33 PRCLGISRDDLLVHSAIEQAV----RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS 88 P + ++L++ +A + A ++ ++ + P I+ G SG GK+ L + Sbjct: 87 PLFEDYTFNNLVLGNANQMAYGATKQIAENIKTSPYNPFIIYGKSGLGKTHLMQAAGHLA 146 Query: 89 RSTR-------------FSNIAKSLDSILID-------TRKPVLLEDIDLLDFND---TQ 125 + NI SL I+ + +L++DI L+ + + Sbjct: 147 KEKNPNIKIIYVPLMDFVRNITSSLRHNTIENIKNFYQSTDLLLVDDIHLIAGKEKSQEE 206 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVK 184 FHI N + ++ T P + L D L +R + ++ P+ + +++K Sbjct: 207 FFHIFNFLFSGKKQIIFTCDQPPKNIK-SLEDRLKTRFSQGLNLHLTPPELEMRAAILLK 265 Query: 185 MFADRQIFI--DKKLAAYIVQRMERSLVFAEKLVDKM 219 +++I I + A +I + ++ E + K+ Sbjct: 266 KSQNKRININLTEDTALFIASHIASNIRDLEGALLKL 302 >gi|71064582|ref|YP_263309.1| chromosomal replication initiator protein DnaA [Psychrobacter arcticus 273-4] gi|71037567|gb|AAZ17875.1| probable bacterial chromosomal replication initiator protein [Psychrobacter arcticus 273-4] Length = 481 Score = 91.4 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 34/232 (14%), Positives = 77/232 (33%), Gaps = 25/232 (10%) Query: 35 CLGISRDDLLVHSAIEQAVRLI----DSWPSWPSRVVILVGPSGSGKSCLANIWSDKS-- 88 + + + + A + + + GPSG GK+ L + + + Sbjct: 147 NPDFTFETFVTGKSNNLAYKACYELGKRQSKNRHNPLFIYGPSGLGKTHLMHSVAHRYLK 206 Query: 89 --------------RSTRFSNIAKSLDSIL--IDTRKPVLLEDIDLLDF---NDTQLFHI 129 +S ++ I ++++DI +L + + + Sbjct: 207 NNQTFYYFTSEKFINQLVYSLRNNKIEDFKKKIKKVDLLIVDDIHVLAGKTKSSNEFLTL 266 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 D L++ + P SR V + P+ D +++ K A Sbjct: 267 FADFTSGDKQLILASDRHPSQMTEFDERFRSRFSWGLTVAVDPPEIDTRVQILQKKAASY 326 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + + K+ A +I Q + ++ E ++++ A G IT + LK+ Sbjct: 327 GMSLPKECALFIAQNVVSNVRRLEGALNQVFANANLTGAPITLEMVQYALKD 378 >gi|254804280|ref|YP_003082501.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis alpha14] gi|254667822|emb|CBA03812.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis alpha14] gi|261393234|emb|CAX50857.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis 8013] gi|325204854|gb|ADZ00308.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis M01-240355] Length = 518 Score = 91.4 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 39/255 (15%), Positives = 82/255 (32%), Gaps = 27/255 (10%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILV 70 K + D ++ EE + + D L+ A + P + L Sbjct: 162 AKARTDAQRDAEEARYEQTNLSPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSYNPFFLY 221 Query: 71 GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKP 110 G +G GK+ L ++ R + + S Sbjct: 222 GSTGLGKTHLVQAVGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDL 281 Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 ++++DI + D + F++ N H L++T P L SR Sbjct: 282 LIIDDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLT 341 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 +++ P+ + ++ K I I+ + A +I + ++ E +++ + Sbjct: 342 LELEPPELEMRIAILQKKAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMN 401 Query: 228 MG-ITRSLAAEVLKE 241 I LA L++ Sbjct: 402 RPVIDIDLARTALQD 416 >gi|254671988|emb|CBA04453.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis alpha275] Length = 518 Score = 91.0 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 39/255 (15%), Positives = 82/255 (32%), Gaps = 27/255 (10%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILV 70 K + D ++ EE + + D L+ A + P + L Sbjct: 162 AKARTDAQRDAEEARYEQTNLSPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSYNPFFLY 221 Query: 71 GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKP 110 G +G GK+ L ++ R + + S Sbjct: 222 GSTGLGKTHLVQAVGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDL 281 Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 ++++DI + D + F++ N H L++T P L SR Sbjct: 282 LIIDDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLT 341 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 +++ P+ + ++ K I I+ + A +I + ++ E +++ + Sbjct: 342 LELEPPELEMRIAILQKKAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMN 401 Query: 228 MG-ITRSLAAEVLKE 241 I LA L++ Sbjct: 402 RPVIDIDLARTALQD 416 >gi|124025331|ref|YP_001014447.1| chromosomal replication initiation protein [Prochlorococcus marinus str. NATL1A] gi|166214689|sp|A2C122|DNAA_PROM1 RecName: Full=Chromosomal replication initiator protein DnaA gi|123960399|gb|ABM75182.1| chromosomal replication initiator protein DnaA [Prochlorococcus marinus str. NATL1A] Length = 464 Score = 91.0 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 38/228 (16%), Positives = 76/228 (33%), Gaps = 26/228 (11%) Query: 43 LLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD-----KSRSTRFS 94 +V A + P R + + G G GK+ L + Sbjct: 134 FVVGPNSRMAHAAAMAVAEAPGREFNPLFICGGVGLGKTHLMQSIGHYRLEIDPGAKVAY 193 Query: 95 NIAKSLDSILIDT---------------RKPVLLEDIDLLDFND---TQLFHIINSIHQY 136 ++ + LI +L++DI ++ + + FH N++H+ Sbjct: 194 VSTETFTNDLIVAIRKDGMQAFRNRYREADLILVDDIQFIEGKEYTQEEFFHTFNALHEA 253 Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196 +++T+ P L SR + I PD + ++ K ++ + + Sbjct: 254 GRQIVLTSDRPPSQIPRLQERLISRFSMGLIADIQAPDLETRMAILQKKAEHERMRLPRD 313 Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 L +I R ++ E + A G+ +T A +L T Q Sbjct: 314 LIQFIAGRFTSNIRELEGAFTRAVAFASITGLPMTVESVAPMLDPTGQ 361 >gi|313640132|gb|EFS04749.1| chromosomal replication initiator protein DnaA [Listeria seeligeri FSL S4-171] Length = 287 Score = 91.0 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 26/177 (14%), Positives = 60/177 (33%), Gaps = 26/177 (14%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW-----SD 86 D ++ S A + P++ + + G G GK+ L + Sbjct: 111 NPRYVFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAVGHYVQQH 170 Query: 87 KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 K + ++ + I + + +L++DI L + + FH Sbjct: 171 KDNAKVMYLSSEKFTNEFISSIRDNKTEEFRTKYRNVDVLLIDDIQFLAGKEGTQEEFFH 230 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 N+++ +++++ P L SR + + I+ PD + ++ K Sbjct: 231 TFNTLYDEQKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKK 287 >gi|296314155|ref|ZP_06864096.1| DNA replication initiator protein [Neisseria polysaccharea ATCC 43768] gi|296839190|gb|EFH23128.1| DNA replication initiator protein [Neisseria polysaccharea ATCC 43768] Length = 518 Score = 91.0 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 39/255 (15%), Positives = 82/255 (32%), Gaps = 27/255 (10%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILV 70 K + D ++ EE + + D L+ A + P + L Sbjct: 162 AKARTDAQRDAEEARYEQTNLSPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSYNPFFLY 221 Query: 71 GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKP 110 G +G GK+ L ++ R + + S Sbjct: 222 GSTGLGKTHLVQAVGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDL 281 Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 ++++DI + D + F++ N H L++T P L SR Sbjct: 282 LIIDDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLT 341 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 +++ P+ + ++ K I I+ + A +I + ++ E +++ + Sbjct: 342 LELEPPELEMRIAILQKKAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMN 401 Query: 228 MG-ITRSLAAEVLKE 241 I LA L++ Sbjct: 402 RPVIDIDLARTALQD 416 >gi|218767523|ref|YP_002342035.1| chromosomal replication initiation protein [Neisseria meningitidis Z2491] gi|14194677|sp|Q9JW45|DNAA_NEIMA RecName: Full=Chromosomal replication initiator protein DnaA gi|121051531|emb|CAM07828.1| putative chromosomal replication initiator protein [Neisseria meningitidis Z2491] gi|308389997|gb|ADO32317.1| putative chromosomal replication initiator protein [Neisseria meningitidis alpha710] gi|319409787|emb|CBY90095.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis WUE 2594] Length = 518 Score = 91.0 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 39/255 (15%), Positives = 82/255 (32%), Gaps = 27/255 (10%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILV 70 K + D ++ EE + + D L+ A + P + L Sbjct: 162 AKARTDAQRDAEEARYEQTNLSPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSYNPFFLY 221 Query: 71 GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKP 110 G +G GK+ L ++ R + + S Sbjct: 222 GSTGLGKTHLVQAVGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDL 281 Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 ++++DI + D + F++ N H L++T P L SR Sbjct: 282 LIIDDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLT 341 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 +++ P+ + ++ K I I+ + A +I + ++ E +++ + Sbjct: 342 LELEPPELEMRIAILQKKAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMN 401 Query: 228 MG-ITRSLAAEVLKE 241 I LA L++ Sbjct: 402 RPVIDIDLARTALQD 416 >gi|325127478|gb|EGC50407.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis N1568] Length = 518 Score = 91.0 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 39/255 (15%), Positives = 82/255 (32%), Gaps = 27/255 (10%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILV 70 K + D ++ EE + + D L+ A + P + L Sbjct: 162 AKARTDAQRDAEEARYEQTNLSPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSYNPFFLY 221 Query: 71 GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKP 110 G +G GK+ L ++ R + + S Sbjct: 222 GSTGLGKTHLVQAVGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDL 281 Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 ++++DI + D + F++ N H L++T P L SR Sbjct: 282 LIIDDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLT 341 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 +++ P+ + ++ K I I+ + A +I + ++ E +++ + Sbjct: 342 LELEPPELEMRIAILQKKAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMN 401 Query: 228 MG-ITRSLAAEVLKE 241 I LA L++ Sbjct: 402 RPVIDIDLARTALQD 416 >gi|121634189|ref|YP_974434.1| putative chromosomal replication initiator protein [Neisseria meningitidis FAM18] gi|166214686|sp|A1KS02|DNAA_NEIMF RecName: Full=Chromosomal replication initiator protein DnaA gi|120865895|emb|CAM09631.1| putative chromosomal replication initiator protein [Neisseria meningitidis FAM18] gi|325131541|gb|EGC54248.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis M6190] gi|325135494|gb|EGC58112.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis M0579] gi|325139204|gb|EGC61750.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis ES14902] gi|325197601|gb|ADY93057.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis G2136] gi|325201462|gb|ADY96916.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis M01-240149] gi|325207443|gb|ADZ02895.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis NZ-05/33] Length = 518 Score = 91.0 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 39/255 (15%), Positives = 82/255 (32%), Gaps = 27/255 (10%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILV 70 K + D ++ EE + + D L+ A + P + L Sbjct: 162 AKARTDAQRDAEEARYEQTNLSPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSYNPFFLY 221 Query: 71 GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKP 110 G +G GK+ L ++ R + + S Sbjct: 222 GSTGLGKTHLVQAVGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDL 281 Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 ++++DI + D + F++ N H L++T P L SR Sbjct: 282 LIIDDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLT 341 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 +++ P+ + ++ K I I+ + A +I + ++ E +++ + Sbjct: 342 LELEPPELEMRIAILQKKAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMN 401 Query: 228 MG-ITRSLAAEVLKE 241 I LA L++ Sbjct: 402 RPVIDIDLARTALQD 416 >gi|325200955|gb|ADY96410.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis H44/76] Length = 502 Score = 91.0 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 38/252 (15%), Positives = 80/252 (31%), Gaps = 31/252 (12%) Query: 17 KNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPS 73 + D + + EQ + D L+ A + P + L G + Sbjct: 153 QRDAEEARYEQTNL----SPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSYNPFFLYGST 208 Query: 74 GSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKPVLL 113 G GK+ L ++ R + + S +++ Sbjct: 209 GLGKTHLVQAVGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLII 268 Query: 114 EDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 +DI + D + F++ N H L++T P L SR +++ Sbjct: 269 DDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLEL 328 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG- 229 P+ + ++ K I I+ + A +I + ++ E +++ + Sbjct: 329 EPPELEMRIAILQKKAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMNRPV 388 Query: 230 ITRSLAAEVLKE 241 I LA L++ Sbjct: 389 IDIDLARTALQD 400 >gi|254472133|ref|ZP_05085533.1| chromosomal replication initiator protein DnaA [Pseudovibrio sp. JE062] gi|211958416|gb|EEA93616.1| chromosomal replication initiator protein DnaA [Pseudovibrio sp. JE062] Length = 489 Score = 91.0 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 36/239 (15%), Positives = 74/239 (30%), Gaps = 28/239 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRST 91 D + + A+ + L G GK+ L ++++R Sbjct: 152 DPKYVFDSFVEGESNVLALAAAKQVAGGGVVTFNPLYLHASVGLGKTHLMQAIANQARMA 211 Query: 92 RFSNIAKSLDSILIDTRKPV----------LLEDIDLLDFNDTQLFH----------IIN 131 + + + + + L IDLL +D Q H +N Sbjct: 212 GRRVLYLTAEHFMYRFVAALQAQSAMSFKETLRSIDLLLIDDMQFLHGKQVQQEFCHTLN 271 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ- 190 ++ +++ A P + SRL VV IS PD +I +Q Sbjct: 272 ALIDGARQVVVAADRAPAELESLDDRVRSRLAGGLVVNISEPDFQLRRAIIEDRMRAQQR 331 Query: 191 ----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 + + Y+ + + S E ++++ +T +A L++ + Sbjct: 332 SYPNFTVPDAVLDYVARNVTSSGRDLEGALNRLVAHNQLTNSPVTLEMAEITLRDLIRA 390 >gi|87123971|ref|ZP_01079821.1| chromosomal replication initiator protein DnaA [Synechococcus sp. RS9917] gi|86168540|gb|EAQ69797.1| chromosomal replication initiator protein DnaA [Synechococcus sp. RS9917] Length = 466 Score = 91.0 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 38/230 (16%), Positives = 76/230 (33%), Gaps = 30/230 (13%) Query: 43 LLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWS-------------- 85 +V A + P R + + G G GK+ L Sbjct: 136 FVVGPNSRMAHAAALAVAESPGREFNPLFICGGVGLGKTHLMQAIGHYRLEIDPDARVSY 195 Query: 86 --------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLFHIINSIH 134 D ++ R + D +L++DI ++ + + FH N++H Sbjct: 196 VSTETFTNDLIQAIRKDGMQAFRDR--YRATDLILVDDIQFIEGKEYTQEEFFHTFNALH 253 Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194 + +++ + P L SR + I PD + ++ K ++ + Sbjct: 254 EAGRQIVIASDRPPSQIPRLQERLISRFSMGLIADIQAPDLETRMAILQKKAEQERVTLP 313 Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 + L YI R ++ E + + A G+ +T A +L + Q Sbjct: 314 RDLIQYISGRFTSNIRELEGALTRAVAFASITGLPMTVESVAPMLDPSGQ 363 >gi|325143614|gb|EGC65933.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis M01-240013] Length = 518 Score = 91.0 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 39/255 (15%), Positives = 82/255 (32%), Gaps = 27/255 (10%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILV 70 K + D ++ EE + + D L+ A + P + L Sbjct: 162 AKARTDAQRDAEEARYEQTNLSPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSYNPFFLY 221 Query: 71 GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKP 110 G +G GK+ L ++ R + + S Sbjct: 222 GSTGLGKTHLVQAVGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDL 281 Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 ++++DI + D + F++ N H L++T P L SR Sbjct: 282 LIIDDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLT 341 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 +++ P+ + ++ K I I+ + A +I + ++ E +++ + Sbjct: 342 LELEPPELEMRIAILQKKAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMN 401 Query: 228 MG-ITRSLAAEVLKE 241 I LA L++ Sbjct: 402 RPVIDIDLARTALQD 416 >gi|228968641|ref|ZP_04129624.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar sotto str. T04001] gi|228791070|gb|EEM38688.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar sotto str. T04001] Length = 291 Score = 91.0 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 31/211 (14%), Positives = 72/211 (34%), Gaps = 35/211 (16%) Query: 10 FFVPDKQKNDQ------PKNKEEQLFFSFP---RCLGISRDDLLVHSAIEQAVRLIDSWP 60 F +P Q + +N + P + D ++ S A + Sbjct: 78 FIIPQSQAEEDIDLPPVKRNPAQDDSAHLPQSMLNPKYTFDTFVIGSGNRFAHAASLAVA 137 Query: 61 SWPSRV---VILVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDTRK--- 109 P++ + + G G GK+ L + + + ++ + I++ + Sbjct: 138 EAPAKAYNPLFIYGGVGLGKTHLMHAIGHYVIEHNPNAKVVYLSSEKFTNEFINSIRDNK 197 Query: 110 ------------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 +L++DI L + + FH N++H+ +++++ P Sbjct: 198 AVDFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFHTFNALHEESKQIVISSDRPPKEIPTL 257 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 L SR + + I+ PD + ++ K Sbjct: 258 EDRLRSRFEWGLITDITPPDLETRIAILRKK 288 >gi|323697422|ref|ZP_08109334.1| chromosomal replication initiator protein DnaA [Desulfovibrio sp. ND132] gi|323457354|gb|EGB13219.1| chromosomal replication initiator protein DnaA [Desulfovibrio desulfuricans ND132] Length = 453 Score = 91.0 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 42/262 (16%), Positives = 88/262 (33%), Gaps = 34/262 (12%) Query: 15 KQKNDQPKNKEEQLFFSFPRCL------GISRDDLLVHSAIEQAVRLIDS--WPSWPSRV 66 KQ P + L S DD +V + E A S ++ S Sbjct: 93 KQAVAAPAPRHMGLPLGQTLKPVTVSNWRFSFDDFVVGPSNELACAASKSIGSSAFNSDH 152 Query: 67 VILVGPSGSGKSCLANI-----------------------WSDKSRSTRFSNIAKSLDSI 103 + L G GK+ L ++ + S + Sbjct: 153 LFLSSGPGLGKTHLLQSVGNELCRTANRKHLKVACLSSEEFATRWVLAFKSGQVDQFKAQ 212 Query: 104 LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 +LLED+ + +L + ++ + +++T+ P + L S Sbjct: 213 FRQGIDVLLLEDVHFFQGKEKMQEELLCTLTALRERGCKVVLTSSFMPKEFSKVDDRLVS 272 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 R + + I+ PD + ++I+ Q+ + +++ + +R+ + E ++ + Sbjct: 273 RFCSGFLAHINRPDMETRRRIILDKARRMQVAVPGEVSELLAERITTDIRQLESCLNNLI 332 Query: 221 NLALSRGMGITRSLAAEVLKET 242 A +T +LA EVL+ Sbjct: 333 LKARLLNRDVTMNLAWEVLENY 354 >gi|255994571|ref|ZP_05427706.1| ATPase involved in DNA replication initiation [Eubacterium saphenum ATCC 49989] gi|255993284|gb|EEU03373.1| ATPase involved in DNA replication initiation [Eubacterium saphenum ATCC 49989] Length = 455 Score = 91.0 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 36/236 (15%), Positives = 78/236 (33%), Gaps = 29/236 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW------- 84 + D+ +V A + I + L G G GK+ L + Sbjct: 119 NPKYTFDNFVVGDNNRHAHAVALSIANSEISEYNPFFLYGGPGLGKTHLMHAIGMTIMKN 178 Query: 85 ----------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND---TQLFH 128 ++ + ++I KS + + V L++DI + + + FH Sbjct: 179 FPYKKVLYVPAETFTTDLINSIRKSSQEEFKNKYRMVDVLLIDDIQFMQGKESTQEEFFH 238 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 NS+ + +++++ P L SR I + + ++ K Sbjct: 239 TFNSLTRLGKQIVISSDRSPNHLNKLDERLRSRFMQNVTTDIKPANFETRVAILQKKCEI 298 Query: 189 RQIFIDK---KLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 +D ++ I ++ ++ E + K+ + + IT A + L E Sbjct: 299 ENFEVDANLNEVINLIAHNIDNNIRALEGALTKLISFSRLLNEKITIDYAKKNLPE 354 >gi|255021121|ref|ZP_05293174.1| Chromosomal replication initiator protein DnaA [Acidithiobacillus caldus ATCC 51756] gi|254969535|gb|EET27044.1| Chromosomal replication initiator protein DnaA [Acidithiobacillus caldus ATCC 51756] Length = 234 Score = 91.0 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 29/190 (15%), Positives = 66/190 (34%), Gaps = 11/190 (5%) Query: 67 VILVGPSGSGKSCLANIWSDKSR--------STRFSNIAKSLDSILIDTRKPVLLEDIDL 118 + GP+ GK+ L + + + + + L+++ Sbjct: 45 AFVHGPAAVGKTHLLQWLALARGSWNPYLDCAEASAASLCGAAEECWCSAALLCLDNVAA 104 Query: 119 LDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 + ++ L+ I N + ++ AR P LPD SR A V + +PD+ Sbjct: 105 WAGDRQAESWLYRIYNGRRERRRPTVLAARQAPAEIAWALPDWASRASALVPVALGVPDE 164 Query: 176 DFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235 + ++ ++ A + + L ++++ R L L+D+ R + + Sbjct: 165 AGIRAILQQVGARQGMAWPDALLDHLLRHHTRDLGALLVLLDEFAAWLWQRHGRPSPARL 224 Query: 236 AEVLKETQQC 245 + L Sbjct: 225 RQFLASRGMP 234 >gi|72160407|ref|YP_288064.1| chromosomal replication initiation protein [Thermobifida fusca YX] gi|123774818|sp|Q47U23|DNAA_THEFY RecName: Full=Chromosomal replication initiator protein DnaA gi|71914139|gb|AAZ54041.1| bacterial chromosomal replication initiator protein, DnaA [Thermobifida fusca YX] Length = 615 Score = 91.0 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 36/252 (14%), Positives = 93/252 (36%), Gaps = 34/252 (13%) Query: 18 NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSG 74 + +QL + D ++ S+ A + P+ + + G SG Sbjct: 261 TNPTSGGPDQL------NPKYTFDTFVIGSSNRFAHAAAVAVAEAPAKAYNPLFVYGGSG 314 Query: 75 SGKSCLANIWSDKS-----RSTRFSNIAKSLDSILIDTRK---------------PVLLE 114 GK+ L + + + ++ + I++ + +L++ Sbjct: 315 LGKTHLLHAIGHYTQRLYEGARVRYVSSEEFTNEFINSIRDGKADGFRRRYRDIDVLLVD 374 Query: 115 DIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKI 170 DI L+ + + FH N++H + +++++ P V L D L +R + + + Sbjct: 375 DIQFLENKEQTQEEFFHTFNTLHNSNKQIVISSDRPPKQL-VTLEDRLRNRFEWGLITDV 433 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 P+ + ++ K A + ++ +I ++ ++ E + ++ A + Sbjct: 434 QPPELETRIAILRKKAAQEGLNAPPEVLEFIASKISTNIRELEGALIRVTAFASLNRQSV 493 Query: 231 TRSLAAEVLKET 242 L + VL++ Sbjct: 494 DLHLTSIVLRDL 505 >gi|116617175|ref|YP_817546.1| chromosomal replication initiator protein DnaA [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|227432906|ref|ZP_03914850.1| DNA-directed DNA replication initiator protein [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|116096022|gb|ABJ61173.1| DNA replication ATPase initiation [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|227351339|gb|EEJ41621.1| DNA-directed DNA replication initiator protein [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 448 Score = 91.0 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 36/240 (15%), Positives = 82/240 (34%), Gaps = 36/240 (15%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVV---ILVGPSGSGKSCLANIWSDKSR-- 89 + + ++ S E A + + P +V ++ G G GK+ L + Sbjct: 110 NPDFTFEKFVIGSGNENAYAVARAVADEPGQVYNPYLIYGGVGLGKTHLMQAIGNAYAVS 169 Query: 90 ---STRFSNIAKSLDSILIDTRKP-----------------VLLEDIDLLDFND---TQL 126 + A+ + ++ + +L++DI + + Sbjct: 170 TPSAHIKYATAEDFLNDFTESLRAGDGATAAFKQEYRSVDLLLVDDIQFWSGKEKVQEEF 229 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 F+ N + + ++MT+ P L SR +A ++ I PD ++ + Sbjct: 230 FNTFNVLTKNGKQIVMTSDKLPTEIVDLQTRLTSRFEAGIMMDIQKPDLPTRVAILQNLS 289 Query: 187 ADRQIFIDKKLAAYIVQRME---RSLVFAEKLVDKMDNLALS-RGMGITRSLAAEVLKET 242 + I + I ++++ RSL A + +L T+ A ++L + Sbjct: 290 ESDGLDIPNDVLELIAEKIDSNVRSLEGAFHKFE----ASLRYMNKPATKETAQQILGDL 345 >gi|403535|gb|AAA18927.1| DnaA [Caulobacter crescentus CB15] Length = 490 Score = 90.6 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 33/238 (13%), Positives = 76/238 (31%), Gaps = 32/238 (13%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANI--WSDKSR 89 + + + A E A + I +W V+ GP G GK+ L N W Sbjct: 150 QERFTFETFVPGPANEFAHAVARRIANWADGHFNPVLFHGPYGFGKTHLLNALAWEAMRN 209 Query: 90 STRFSNIAKSLDSIL------------------IDTRKPVLLEDIDLLDF---NDTQLFH 128 + + + + L + ++++D+ + +LFH Sbjct: 210 APEKRVVYLTAERFLSTFVRAVMDRQTAAFKEELRAADLLIIDDVHFIAGKQSTQEELFH 269 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 + ++ ++ +A P + L S L A V + D + ++ + Sbjct: 270 TLTALVGEGGRVVFSADRPPSAMTEMDAHLRSHLSAGLVCGLEPADRNLRLGILERKIQT 329 Query: 189 RQIFID------KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + ++ ++ R S+ E ++ + A +T +L+ Sbjct: 330 LGAALGFEPSIRPEVMQFLADRFTDSVRELEGALNTLSARAGEGLSRMTLDEVQAILR 387 >gi|309379985|emb|CBX21396.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 105 Score = 90.6 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 50/104 (48%), Gaps = 1/104 (0%) Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199 +L+ + P V DL +R+ V ++ D + M A RQ+ +D ++ Sbjct: 1 MLLGSEYTPQQL-VIREDLRTRMAYCLVYEVKPLTDQEKIDALASMAAARQVTVDSEIFE 59 Query: 200 YIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 Y+++ R + ++D +DN A++ G IT L ++LK+ + Sbjct: 60 YLLKHWRRDMDSLMMMLDTLDNYAVTMGKRITLPLLRQLLKQQE 103 >gi|269118643|ref|YP_003306820.1| chromosomal replication initiator protein DnaA [Sebaldella termitidis ATCC 33386] gi|268612521|gb|ACZ06889.1| chromosomal replication initiator protein DnaA [Sebaldella termitidis ATCC 33386] Length = 452 Score = 90.6 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 36/244 (14%), Positives = 83/244 (34%), Gaps = 38/244 (15%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANI-------- 83 ++ +V E A + P +++ G SG GK+ L + Sbjct: 110 NQRYRFENFVVGKGNELANAACIAISQNPGIVYNPLLIYGGSGLGKTHLMHAVGNAILDK 169 Query: 84 -----------------WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID--------L 118 + + R+ +F+N+ D T +L++DI Sbjct: 170 DPNKKVLYCTSENFNNEFINSLRAGQFANVQNFRDK--FRTLDVLLIDDIQFFEKVFGQG 227 Query: 119 LDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178 + + FH N++ + ++M++ P + SR + V + PD + Sbjct: 228 TGSVEEEFFHTFNTLQELGKQIIMSSDRLPREIRNLSKRIESRFDSGLSVDVQKPDYETR 287 Query: 179 EKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238 ++ + + + I ++ +I + ++ E + ++ + IT L E Sbjct: 288 LAILKNIADSKSVIISDEVLEFISSSISSNIRELEGALTRVIARSTLLRKAITLQLVQED 347 Query: 239 LKET 242 L + Sbjct: 348 LADL 351 >gi|221135255|ref|ZP_03561558.1| Chromosomal replication initiator protein dnaA [Glaciecola sp. HTCC2999] Length = 267 Score = 90.6 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 23/139 (16%), Positives = 62/139 (44%), Gaps = 3/139 (2%) Query: 107 TRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 + +L++DI + + FH N++ + + +++T+ +P L SR Sbjct: 28 SVDALLIDDIQFFAGKDRSQEEFFHTFNALLEGNQQIILTSDKYPKEIQGVEDRLKSRFG 87 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + I P+ + ++++ + +I + ++A +I +R+ ++ E ++++ A Sbjct: 88 WGLTIAIEPPELETRVAILMRKAEENKIKLPNEVAFFIAKRLRTNVRELEGALNRVIANA 147 Query: 224 LSRGMGITRSLAAEVLKET 242 G I+ E L++ Sbjct: 148 NFTGREISIDFVREALRDL 166 >gi|558140|gb|AAA85913.1| putative [Synechocystis sp.] Length = 446 Score = 90.6 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 38/219 (17%), Positives = 76/219 (34%), Gaps = 30/219 (13%) Query: 46 HSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD-----KSRSTRFSNIAKSL 100 +++ A P + L G G GK+ L + + + + Sbjct: 126 AASLAVAES-----PGREFNPLFLCGGVGLGKTHLMQAIAHYRLEMYPNAKVYYVSTERF 180 Query: 101 DSILIDT---------------RKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLM 142 + LI +L++DI + + + FH NS+H+ +++ Sbjct: 181 TNDLITAIRQDNMEDFRSYYRSADFLLIDDIQFIKGKEYTQEEFFHTFNSLHEAGKQVVV 240 Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 + P L SR + I +PD + ++ K +I + K++ YI Sbjct: 241 ASDRAPQRIPGLQDRLISRFSMGLIADIQVPDLETRMAILQKKAEYDRIRLPKEVMEYIA 300 Query: 203 QRMERSLVFAE-KLVDKMDNLALSRGMGITRSLAAEVLK 240 ++ E L+ + +LS + +T A VL Sbjct: 301 SHYTSNIRELEGALIRAIAYTSLSN-VAMTVENIAPVLN 338 >gi|16124264|ref|NP_418828.1| chromosomal replication initiator protein DnaA [Caulobacter crescentus CB15] gi|221232947|ref|YP_002515383.1| chromosomal replication initiation protein [Caulobacter crescentus NA1000] gi|239977204|sp|B8GWW5|DNAA_CAUCN RecName: Full=Chromosomal replication initiator protein DnaA gi|239977205|sp|P0CAU4|DNAA_CAUCR RecName: Full=Chromosomal replication initiator protein DnaA gi|13421094|gb|AAK21996.1| chromosomal replication initiator protein DnaA [Caulobacter crescentus CB15] gi|220962119|gb|ACL93475.1| chromosomal replication initiator protein DnaA [Caulobacter crescentus NA1000] Length = 490 Score = 90.6 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 34/238 (14%), Positives = 76/238 (31%), Gaps = 32/238 (13%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANI--WSDKSR 89 + + + A E A + I +W V+ GP G GK+ L N W Sbjct: 150 QERFTFETFVPGPANEFAHAVARRIANWADGHFNPVLFHGPYGFGKTHLLNALAWEAMRN 209 Query: 90 STRFSNIAKSLDSIL------------------IDTRKPVLLEDIDLLDF---NDTQLFH 128 + + + + L + ++++D+ + +LFH Sbjct: 210 APEKRVVYLTAERFLSTFVRAVMDRQTAAFKEELRAADLLIIDDVHFIAGKQSTQEELFH 269 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 + ++ ++ +A P + L S L A V + D + ++ + Sbjct: 270 TLTALVGEGGRVVFSADRPPSAMTEMDAHLRSHLSAGLVCGLEPADRNLRLGILERKIQT 329 Query: 189 RQIF------IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 I ++ ++ R S+ E ++ + A +T +L+ Sbjct: 330 LGAAHGFEPSIRPEVMQFLADRFTDSVRELEGALNTLSARAGEGLSRMTLDEVQAILR 387 >gi|315222844|ref|ZP_07864729.1| replication initiator protein DnaA [Streptococcus anginosus F0211] gi|315188080|gb|EFU21810.1| replication initiator protein DnaA [Streptococcus anginosus F0211] Length = 447 Score = 90.6 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 34/248 (13%), Positives = 79/248 (31%), Gaps = 36/248 (14%) Query: 29 FFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 + D+ + A+ + ++ + + + G G GK+ L N Sbjct: 104 PIETGLKAKYTFDNFVQGDGNVWALSAALAVSENLAT-TYNPLFIYGGPGLGKTHLLNAI 162 Query: 85 SDKSRSTRFSNIAKSLDSILI--------------------DTRKPVLLEDIDLLDF--- 121 ++ K + + + +L++DI L Sbjct: 163 GNQILENIPDARVKYIPAETFINDFLEHLRLGEMESFKRTYRSLDLLLIDDIQSLGGKKV 222 Query: 122 -NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 + F+ N++H + +++T+ P L +R K I+ PD + Sbjct: 223 STQEEFFNTFNALHGDNKQIVLTSDRSPDHLDNLEERLVTRFKWGLTQNITPPDFETRIA 282 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG----MGITRSLAA 236 ++ D Y+ + + ++ E ++ + +L IT AA Sbjct: 283 ILRNKIEDLDYIFPNDTLEYLAGQFDSNVRDLEGALNDI---SLMARVKNLKEITIDAAA 339 Query: 237 EVLKETQQ 244 E ++ +Q Sbjct: 340 EAIRARKQ 347 >gi|89898823|ref|YP_521294.1| chromosomal replication initiation protein [Rhodoferax ferrireducens T118] gi|89343560|gb|ABD67763.1| chromosomal replication initiator protein DnaA [Rhodoferax ferrireducens T118] Length = 470 Score = 90.6 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 76/199 (38%), Gaps = 23/199 (11%) Query: 67 VILVGPSGSGKSCLANI-----WSDKSRSTRFSNIAKSLDSILIDTR------------- 108 + + G G GK+ L + +D+ + A+ S ++ Sbjct: 171 LFIYGGVGLGKTHLMHAVGNRLLADQPNAKVLYIHAEQFVSDVVKAYQRKTFDEFKERYH 230 Query: 109 --KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 +L++D+ + + F+ ++ S ++MT+ T+P L SR Sbjct: 231 SLDLLLIDDVQFFANKERTQEEFFNAFEALLAKKSHIVMTSDTYPKGLTDIHERLVSRFD 290 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + V I P+ + +++ I + +++A ++ + + ++ E + K+ + Sbjct: 291 SGLTVAIEPPELEMRVAILINKARVEGIVMPEEVAFFVAKNVRSNVRELEGALRKILAYS 350 Query: 224 LSRGMGITRSLAAEVLKET 242 I+ LA E L++ Sbjct: 351 RFNQKDISILLAREALRDL 369 >gi|241759452|ref|ZP_04757556.1| chromosomal replication initiator protein DnaA [Neisseria flavescens SK114] gi|241320234|gb|EER56567.1| chromosomal replication initiator protein DnaA [Neisseria flavescens SK114] Length = 522 Score = 90.6 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 37/253 (14%), Positives = 80/253 (31%), Gaps = 31/253 (12%) Query: 16 QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGP 72 ++D + + EQ + + L+ A + P L G Sbjct: 172 AQHDAEEARYEQTNL----SRDYTFETLVEGKGNRLAAAAAQAIAENPGQGYNPFFLYGS 227 Query: 73 SGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKPVL 112 +G GK+ L ++ R + + S ++ Sbjct: 228 TGLGKTHLVQAIGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLI 287 Query: 113 LEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 ++DI + D + F++ N H L++T P L SR ++ Sbjct: 288 IDDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLE 347 Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229 + P+ + ++ K I I+ + A +I + ++ E +++ + Sbjct: 348 LEPPELEMRVAILQKKAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVSASSRFMNRP 407 Query: 230 -ITRSLAAEVLKE 241 I LA L++ Sbjct: 408 AIDMDLARTALQD 420 >gi|15677734|ref|NP_274897.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis MC58] gi|14194678|sp|Q9JXS7|DNAA_NEIMB RecName: Full=Chromosomal replication initiator protein DnaA gi|7227160|gb|AAF42233.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis MC58] gi|316985519|gb|EFV64466.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis H44/76] gi|325133542|gb|EGC56205.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis M13399] gi|325206810|gb|ADZ02263.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis M04-240196] Length = 518 Score = 90.6 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 38/252 (15%), Positives = 80/252 (31%), Gaps = 31/252 (12%) Query: 17 KNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPS 73 + D + + EQ + D L+ A + P + L G + Sbjct: 169 QRDAEEARYEQTNL----SPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSYNPFFLYGST 224 Query: 74 GSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKPVLL 113 G GK+ L ++ R + + S +++ Sbjct: 225 GLGKTHLVQAVGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLII 284 Query: 114 EDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 +DI + D + F++ N H L++T P L SR +++ Sbjct: 285 DDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLEL 344 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG- 229 P+ + ++ K I I+ + A +I + ++ E +++ + Sbjct: 345 EPPELEMRIAILQKKAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMNRPV 404 Query: 230 ITRSLAAEVLKE 241 I LA L++ Sbjct: 405 IDIDLARTALQD 416 >gi|170016359|ref|YP_001727278.1| chromosomal replication initiator protein DnaA [Leuconostoc citreum KM20] gi|169803216|gb|ACA81834.1| Chromosomal replication initiator protein DnaA [Leuconostoc citreum KM20] Length = 448 Score = 90.2 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 40/240 (16%), Positives = 82/240 (34%), Gaps = 36/240 (15%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVV---ILVGPSGSGKSCLANIWSDKSRST 91 + D +V + E A + + P RV ++ G G GK+ L + T Sbjct: 110 NENFTFDKFVVGTGNENAYAIARAVAEDPGRVYNPYLIYGGVGLGKTHLMQAIGNAYSKT 169 Query: 92 R-------------FSNIAKSLDSILIDTRK---------PVLLEDIDLLDFND---TQL 126 ++ +SL + T +L++DI + + Sbjct: 170 TPSARIKYATAEDFLNDFTESLRAGEGATAAFKKEYRTVDLLLIDDIQFWSGKEKVQEEF 229 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK----AATVVKISLPDDDFLEKVI 182 F+ N + + ++MT+ P DL SRL A + I PD ++ Sbjct: 230 FNTFNVLTKTGKQIIMTSDKLPTEIV----DLQSRLTSRFEAGISMDIQKPDLPTRVAIL 285 Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + I + I +++ ++ E + + + R T+ A ++L + Sbjct: 286 KNLAETDGLTIPNDVLELIADKIDSNIRTLEGTFHRFEAMLRFRNKPATKETAQQILGDL 345 >gi|312112796|ref|YP_004010392.1| chromosomal replication initiator protein DnaA [Rhodomicrobium vannielii ATCC 17100] gi|311217925|gb|ADP69293.1| chromosomal replication initiator protein DnaA [Rhodomicrobium vannielii ATCC 17100] Length = 497 Score = 90.2 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 33/220 (15%), Positives = 81/220 (36%), Gaps = 33/220 (15%) Query: 33 PRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRV--VILVGPSGSGKSCLANIWSD 86 P + +V S A ++ +S P P + + + G GK+ L + + Sbjct: 150 PLDPRYTFQSFVVGSPNRLAHAAAFQVAESTPEQPLKYNPLYIHARVGMGKTHLLHAIAW 209 Query: 87 KSRST----------------RFSNIAKSLDSIL----IDTRKPVLLEDIDLLDFN--DT 124 + ++ F+ ++ D+ + T ++++D++ L Sbjct: 210 EMKARNPNAKVLYLTAERFMYSFAEALQTRDAPAFKEKLRTIDLLIIDDMEFLQGRTFQQ 269 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + H +NS+ +++ A P+ + SRL V ++S D D K++ + Sbjct: 270 EFCHTLNSLIDGGKQVVVAADCAPLLLESFDARMRSRLSGGLVAEMSALDFDLRLKILQR 329 Query: 185 MFAD-----RQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 A+ R + + Y+ ++ + E + ++ Sbjct: 330 RAAEKISLSRGFEVPGDVLEYLATQLTENGRELEGAITRL 369 >gi|254558654|ref|YP_003065749.1| DNA replication initiator protein, transcriptional regulator of replication and housekeeping genes [Methylobacterium extorquens DM4] gi|254265932|emb|CAX21681.1| DNA replication initiator protein, transcriptional regulator of replication and housekeeping genes [Methylobacterium extorquens DM4] Length = 501 Score = 90.2 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 35/240 (14%), Positives = 80/240 (33%), Gaps = 30/240 (12%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWP-----SWPSRVVILVGPSGSGKSCLANIWSDK 87 P +S + +V + A + + + G GK+ L + Sbjct: 160 PLDARLSFANFVVGRSNALAHAAAERIARSDSDGALYNPLYVHAGVGLGKTHLLHAAGHA 219 Query: 88 SRSTRFSNIAKSLDSIL------------------IDTRKPVLLEDIDLLDFN--DTQLF 127 +R I + D + + ++L+D+ + T+ Sbjct: 220 AREAGRRVIYLTADRFMYGFVNALKTQNALAFKERLRAIDLLILDDVQFIQGKSIQTEFG 279 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF- 186 H +N++ +++ + P + SRL VV+I D+ ++ Sbjct: 280 HTLNALIDSGRQVVVASDRPPTELEALDERVRSRLAGGLVVEIGGLDEGLRASILSARLD 339 Query: 187 ADRQ----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 A RQ + ++AY+ + + + E V+++ A G +T A +++ Sbjct: 340 AVRQSHPNFEVSPAVSAYVARAITANGRDLEGAVNRLLAHATLTGAPVTVETAETAIRDL 399 >gi|240136784|ref|YP_002961251.1| DNA replication initiator protein, transcriptional regulator of replication and housekeeping genes [Methylobacterium extorquens AM1] gi|240006748|gb|ACS37974.1| DNA replication initiator protein, transcriptional regulator of replication and housekeeping genes [Methylobacterium extorquens AM1] Length = 501 Score = 90.2 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 35/240 (14%), Positives = 80/240 (33%), Gaps = 30/240 (12%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWP-----SWPSRVVILVGPSGSGKSCLANIWSDK 87 P +S + +V + A + + + G GK+ L + Sbjct: 160 PLDARLSFANFVVGRSNALAHAAAERIARSDSDGALYNPLYVHAGVGLGKTHLLHAAGHA 219 Query: 88 SRSTRFSNIAKSLDSIL------------------IDTRKPVLLEDIDLLDFN--DTQLF 127 +R I + D + + ++L+D+ + T+ Sbjct: 220 AREAGRRVIYLTADRFMYGFVNALKTQNALAFKERLRAIDLLILDDVQFIQGKSIQTEFG 279 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF- 186 H +N++ +++ + P + SRL VV+I D+ ++ Sbjct: 280 HTLNALIDSGRQVVVASDRPPTELEALDERVRSRLAGGLVVEIGGLDEGLRASILSARLD 339 Query: 187 ADRQ----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 A RQ + ++AY+ + + + E V+++ A G +T A +++ Sbjct: 340 AVRQSHPNFEVSPAVSAYVARAITANGRDLEGAVNRLLAHATLTGAPVTVETAETAIRDL 399 >gi|254424343|ref|ZP_05038061.1| chromosomal replication initiator protein DnaA [Synechococcus sp. PCC 7335] gi|196191832|gb|EDX86796.1| chromosomal replication initiator protein DnaA [Synechococcus sp. PCC 7335] Length = 460 Score = 90.2 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 81/228 (35%), Gaps = 32/228 (14%) Query: 5 KEDYSFFVPDKQKNDQPK--NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW 62 E + +P + + K +K Q + SR +V + A + Sbjct: 94 SEAANDSLPAASADTRGKASSKTNQSSSALNPKAIFSR--FVVGANNRMAHAAALAVAES 151 Query: 63 PSRV---VILVGPSGSGKSCLANIW------SDKSRSTRFSNIAKSLDSILIDTRK---- 109 P R + L G G GK+ L S++ + + + ++ R+ Sbjct: 152 PGREFNPLFLCGGVGLGKTHLMQAIGHYRIESNQQAKVAYVSTETFTNDLIASIRRDTMQ 211 Query: 110 ----------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156 +L++DI ++ + + FH N++H+ +++ + P L Sbjct: 212 RFREQYREVDVILVDDIQFIEGKEYTQEEFFHTFNTLHEAGKQIVLASDRPPNQIP-RLQ 270 Query: 157 D-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203 D LCSR + I PD + ++ K Q+ I + + YI Sbjct: 271 DRLCSRFSMGLIADIQSPDFETRMAILQKKAEYEQVSIARDVTEYIAS 318 >gi|309811383|ref|ZP_07705170.1| chromosomal replication initiator protein DnaA [Dermacoccus sp. Ellin185] gi|308434690|gb|EFP58535.1| chromosomal replication initiator protein DnaA [Dermacoccus sp. Ellin185] Length = 501 Score = 90.2 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 34/243 (13%), Positives = 78/243 (32%), Gaps = 35/243 (14%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD----- 86 + D ++ + A + P + + + G SG GK+ L + Sbjct: 163 NPKYTFDTFVIGESNRFAHAAAIAIAEEPGQAYNPLFIHGDSGLGKTHLLHAIGHYVHDY 222 Query: 87 -----------------------KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123 R+ F + +L+ L + Sbjct: 223 HPKLRVRYVSSEEFTNDFVNSIRDDRAATFQRRYRDDVDVLLIDDIQFL----QGKEQTQ 278 Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 + FH N++H +++T+ P + SR K+ + P+ + ++ Sbjct: 279 EEFFHTFNALHSTGKQIVLTSDQPPEKLTTFADRMRSRFKSGLTTDVHPPELETRIAILR 338 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 K ++ I + I ++ ++ E + ++ A + + R+ AA VLK+ Sbjct: 339 KKANAERMDIGDDVLELIASKISTNIRELEGALIRVAAYASLQKEPVDRAKAAFVLKDVV 398 Query: 244 QCD 246 + Sbjct: 399 PSE 401 >gi|163849458|ref|YP_001637501.1| chromosomal replication initiation protein [Methylobacterium extorquens PA1] gi|218528084|ref|YP_002418900.1| chromosomal replication initiation protein [Methylobacterium chloromethanicum CM4] gi|163661063|gb|ABY28430.1| chromosomal replication initiator protein DnaA [Methylobacterium extorquens PA1] gi|218520387|gb|ACK80972.1| chromosomal replication initiator protein DnaA [Methylobacterium chloromethanicum CM4] Length = 501 Score = 90.2 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 35/240 (14%), Positives = 80/240 (33%), Gaps = 30/240 (12%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWP-----SWPSRVVILVGPSGSGKSCLANIWSDK 87 P +S + +V + A + + + G GK+ L + Sbjct: 160 PLDARLSFANFVVGRSNALAHAAAERIARSDSDGALYNPLYVHAGVGLGKTHLLHAAGHA 219 Query: 88 SRSTRFSNIAKSLDSIL------------------IDTRKPVLLEDIDLLDFN--DTQLF 127 +R I + D + + ++L+D+ + T+ Sbjct: 220 AREAGRRVIYLTADRFMYGFVNALKTQNALAFKERLRAIDLLILDDVQFIQGKSIQTEFG 279 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF- 186 H +N++ +++ + P + SRL VV+I D+ ++ Sbjct: 280 HTLNALIDSGRQVVVASDRPPTELEALDERVRSRLAGGLVVEIGGLDEGLRASILSARLD 339 Query: 187 ADRQ----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 A RQ + ++AY+ + + + E V+++ A G +T A +++ Sbjct: 340 AVRQSHPNFEVSPAVSAYVARAITANGRDLEGAVNRLLAHATLTGAPVTVETAETAIRDL 399 >gi|256848506|ref|ZP_05553948.1| chromosomal replication initiator protein DnaA [Lactobacillus coleohominis 101-4-CHN] gi|256714773|gb|EEU29752.1| chromosomal replication initiator protein DnaA [Lactobacillus coleohominis 101-4-CHN] Length = 439 Score = 90.2 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 82/235 (34%), Gaps = 27/235 (11%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSW---PSWPSRVVILVGPSGSGKSCLANIWS---- 85 P + D+ + + A + P +++ G G GK+ L + Sbjct: 102 PLNPEYTFDNFVEGRTNQFAYASAFAASEQPGGLYNPLLIYGDVGLGKTHLMQAIANNML 161 Query: 86 -------------DKSRSTRFSNIAKSLDSILIDTRK---PVLLEDID---LLDFNDTQL 126 + + ++I + +L++D+ + + Sbjct: 162 VHNPDAKIKYVTSENFMNDYINSIKTGTQEQFRQEYRDLDALLVDDVQFFSEKNGTQLEF 221 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 F+ NS+H + +++TA P L SR V+I+ PD + ++ + Sbjct: 222 FNTFNSLHDNNKQIVLTADQNPKEIPNLTDRLVSRFVWGLTVEITAPDLETRIAILNRKA 281 Query: 187 ADRQIF-IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + I ++ +I ++ ++ E + ++ A I ++A E L+ Sbjct: 282 EEENLQGIPNEVFNFIASKINTNVRELEGALMRVRVFADLHKTSINEAVAREALQ 336 >gi|309774990|ref|ZP_07670006.1| DNA replication initiator protein, ATPase [Erysipelotrichaceae bacterium 3_1_53] gi|308917244|gb|EFP62968.1| DNA replication initiator protein, ATPase [Erysipelotrichaceae bacterium 3_1_53] Length = 452 Score = 90.2 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 88/232 (37%), Gaps = 28/232 (12%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW-----SDKSR 89 + D +V +A S +P + + + G SG GK+ L + +++ Sbjct: 116 YTFDSFVVGKNNREAHAAALSVCYYPGKFNNPLFIFGNSGLGKTHLLHAIGNYVKANRPE 175 Query: 90 STRFSNIAKSLDSILIDTRKPVLLEDI-------DLLDFNDTQ----------LFHIINS 132 ++ ++LI+ K +ED+ D L +D Q F++ N Sbjct: 176 EKVLYIYSEDFVTLLIEAMKNKTVEDVKEMICSVDYLLIDDIQRLKQSTSQEIFFNMYNK 235 Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ-- 190 + + +++T+ P L SR + V + P+ + + ++ K R Sbjct: 236 LISDNKQIVITSDIHPTELKGIENRLISRFSSGLSVSVGSPEFETAKAILQKKMEGRSDE 295 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNLALSRGMGITRSLAAEVLKE 241 I ID ++ ++ R + E ++++ L I + A E+ KE Sbjct: 296 IMIDDEVLDFLATRFASDVRKLEGTLNELFFKAILYNPERIDITFAKEIFKE 347 >gi|325846368|ref|ZP_08169337.1| chromosomal replication initiator protein DnaA [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481552|gb|EGC84592.1| chromosomal replication initiator protein DnaA [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 458 Score = 90.2 bits (223), Expect = 3e-16, Method: Composition-based stats. Identities = 34/209 (16%), Positives = 70/209 (33%), Gaps = 34/209 (16%) Query: 40 RDDLLVHSAIEQAVRLIDSWPSW--------PSRVVILVGPSGSGKSCLANIWS------ 85 ++ + + + A+ S + + G SG GK+ L + Sbjct: 124 FENFVQGKSNQLALAASQSVAENMANYKVSRVYNPLFIYGSSGLGKTHLMQAIAHEILKK 183 Query: 86 -----------DKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLD---FNDTQLFH 128 +K + S + + + + V L++DI + + FH Sbjct: 184 RDDCYVMYLSSEKFTNEMISAVRNNTNEEFRKKYRSVDMLLIDDIQFIANKTGTQEEFFH 243 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ +++++ P L SR +V IS PD + ++ K + Sbjct: 244 TFEDLYNQGKQIVISSDRPPKEIKHLEERLVSRFGWGIIVDISKPDFETRVAILQKKQDE 303 Query: 189 RQIFIDKKLAAYIVQRME---RSLVFAEK 214 +D K+ YI + +E R L A Sbjct: 304 LGAVVDYKILEYIAENIETNIRDLEGALA 332 >gi|212697388|ref|ZP_03305516.1| hypothetical protein ANHYDRO_01958 [Anaerococcus hydrogenalis DSM 7454] gi|212675580|gb|EEB35187.1| hypothetical protein ANHYDRO_01958 [Anaerococcus hydrogenalis DSM 7454] Length = 459 Score = 90.2 bits (223), Expect = 3e-16, Method: Composition-based stats. Identities = 34/209 (16%), Positives = 70/209 (33%), Gaps = 34/209 (16%) Query: 40 RDDLLVHSAIEQAVRLIDSWPSW--------PSRVVILVGPSGSGKSCLANIWS------ 85 ++ + + + A+ S + + G SG GK+ L + Sbjct: 125 FENFVQGKSNQLALAASQSVAENMANYKVSRVYNPLFIYGSSGLGKTHLMQAIAHEILKK 184 Query: 86 -----------DKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLD---FNDTQLFH 128 +K + S + + + + V L++DI + + FH Sbjct: 185 RDDCYVMYLSSEKFTNEMISAVRNNTNEEFRKKYRSVDMLLIDDIQFIANKTGTQEEFFH 244 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ +++++ P L SR +V IS PD + ++ K + Sbjct: 245 TFEDLYNQGKQIVISSDRPPKEIKHLEERLVSRFGWGIIVDISKPDFETRVAILQKKQDE 304 Query: 189 RQIFIDKKLAAYIVQRME---RSLVFAEK 214 +D K+ YI + +E R L A Sbjct: 305 LGAVVDYKILEYIAENIETNIRDLEGALA 333 >gi|284799976|ref|ZP_05985356.2| DNA replication initiator protein [Neisseria subflava NJ9703] gi|284796247|gb|EFC51594.1| DNA replication initiator protein [Neisseria subflava NJ9703] Length = 506 Score = 89.8 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 37/253 (14%), Positives = 80/253 (31%), Gaps = 31/253 (12%) Query: 16 QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGP 72 ++D + + EQ + + L+ A + P L G Sbjct: 156 AQHDAEEARYEQTNL----SRDYTFETLVEGKGNRLAAAAAQAIAENPGQGYNPFFLYGS 211 Query: 73 SGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKPVL 112 +G GK+ L ++ R + + S ++ Sbjct: 212 TGLGKTHLVQAIGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLI 271 Query: 113 LEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 ++DI + D + F++ N H L++T P L SR ++ Sbjct: 272 IDDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLE 331 Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229 + P+ + ++ K I I+ + A +I + ++ E +++ + Sbjct: 332 LEPPELEMRVAILQKKAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVSASSRFMNRP 391 Query: 230 -ITRSLAAEVLKE 241 I LA L++ Sbjct: 392 VIDMDLARTALQD 404 >gi|93004834|ref|YP_579271.1| chromosomal replication initiator protein DnaA [Psychrobacter cryohalolentis K5] gi|92392512|gb|ABE73787.1| chromosomal replication initiator protein DnaA [Psychrobacter cryohalolentis K5] Length = 481 Score = 89.8 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 33/232 (14%), Positives = 77/232 (33%), Gaps = 25/232 (10%) Query: 35 CLGISRDDLLVHSAIEQAVRLI----DSWPSWPSRVVILVGPSGSGKSCLANIWSDKS-- 88 + + + + A + + + GPSG GK+ L + + + Sbjct: 147 NPDFTFETFVTGKSNNLAYKACYELGKRQSKNRHNPLFIYGPSGLGKTHLMHSVAHRYLK 206 Query: 89 --------------RSTRFSNIAKSLDSIL--IDTRKPVLLEDIDLLDF---NDTQLFHI 129 +S ++ I ++++DI +L + + + Sbjct: 207 NNQNFYYFTSEKFINQLVYSLRNNKIEDFKKKIKKVDLLIVDDIHVLAGKTKSSNEFLTL 266 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 D L++ + P SR V + P+ D +++ + A Sbjct: 267 FADFTSGDKQLILASDRHPSQMTEFDERFRSRFSWGLTVAVDPPEIDTRVQILQRKAASY 326 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + + K+ A +I Q + ++ E ++++ A G IT + LK+ Sbjct: 327 GMSLPKECALFIAQNVVSNVRRLEGALNQVFANANLTGAPITLEMVQYALKD 378 >gi|225077253|ref|ZP_03720452.1| hypothetical protein NEIFLAOT_02308 [Neisseria flavescens NRL30031/H210] gi|224951397|gb|EEG32606.1| hypothetical protein NEIFLAOT_02308 [Neisseria flavescens NRL30031/H210] Length = 504 Score = 89.8 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 37/253 (14%), Positives = 80/253 (31%), Gaps = 31/253 (12%) Query: 16 QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGP 72 ++D + + EQ + + L+ A + P L G Sbjct: 154 AQHDAEEARYEQTNL----SRDYTFETLVEGKGNRLAAAAAQAIAENPGQGYNPFFLYGS 209 Query: 73 SGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKPVL 112 +G GK+ L ++ R + + S ++ Sbjct: 210 TGLGKTHLVQAIGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLI 269 Query: 113 LEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 ++DI + D + F++ N H L++T P L SR ++ Sbjct: 270 IDDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLE 329 Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229 + P+ + ++ K I I+ + A +I + ++ E +++ + Sbjct: 330 LEPPELEMRVAILQKKAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVSASSRFMNRP 389 Query: 230 -ITRSLAAEVLKE 241 I LA L++ Sbjct: 390 VIDMDLARTALQD 402 >gi|319639360|ref|ZP_07994111.1| chromosomal replication initiator protein dnaA [Neisseria mucosa C102] gi|317399544|gb|EFV80214.1| chromosomal replication initiator protein dnaA [Neisseria mucosa C102] Length = 506 Score = 89.8 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 37/252 (14%), Positives = 80/252 (31%), Gaps = 31/252 (12%) Query: 17 KNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPS 73 ++D + + EQ + + L+ A + P L G + Sbjct: 157 QHDAEEARYEQTNL----SRDYTFETLVEGKGNRLAAAAAQAIAENPGQGYNPFFLYGST 212 Query: 74 GSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKPVLL 113 G GK+ L ++ R + + S +++ Sbjct: 213 GLGKTHLVQAIGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLII 272 Query: 114 EDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 +DI + D + F++ N H L++T P L SR +++ Sbjct: 273 DDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLEL 332 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG- 229 P+ + ++ K I I+ + A +I + ++ E +++ + Sbjct: 333 EPPELEMRVAILQKKAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVSASSRFMNRPV 392 Query: 230 ITRSLAAEVLKE 241 I LA L++ Sbjct: 393 IDMDLARTALQD 404 >gi|170738368|ref|YP_001767023.1| chromosomal replication initiation protein [Methylobacterium sp. 4-46] gi|168192642|gb|ACA14589.1| chromosomal replication initiator protein DnaA [Methylobacterium sp. 4-46] Length = 494 Score = 89.8 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 32/240 (13%), Positives = 75/240 (31%), Gaps = 30/240 (12%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWP----SWP-SRVVILVGPSGSGKSCLANIWSDK 87 P ++ +V + A + S P + G GK+ L + Sbjct: 153 PLDARLTFQTFVVGRSNALAHAAAERVAGHEGSGPIYNPLYFHAGVGLGKTHLLHAIGHA 212 Query: 88 SRSTRFSNIAKSLDSIL------------------IDTRKPVLLEDIDLLDFN--DTQLF 127 ++ I + D + + ++L+D+ + + Sbjct: 213 AKEAGRRVIYLTADRFMYGFVNALKTQNALAFKERLRAIDVLILDDVQFIQGRSIQAEFG 272 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF- 186 H +N++ ++ A P + SRL VV+I D+ ++ Sbjct: 273 HTLNALIDAGRQVVAAADRPPTELESLDERVRSRLAGGLVVEIGTLDEALRATILQSRLE 332 Query: 187 ----ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + +A Y+ + + + E V+++ A G +T A +++ Sbjct: 333 AVRVSHPGFEVSPAVAEYVAKAITANGRDLEGAVNRLLAHATLTGAPVTLETAETAIRDL 392 >gi|94263748|ref|ZP_01287555.1| chromosomal replication initiator protein, DnaA [delta proteobacterium MLMS-1] gi|93455848|gb|EAT06011.1| chromosomal replication initiator protein, DnaA [delta proteobacterium MLMS-1] Length = 447 Score = 89.8 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 45/264 (17%), Positives = 89/264 (33%), Gaps = 44/264 (16%) Query: 23 NKEEQLFFS-FPRC--------LGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILV 70 EQL PR + D+ +V + A ++ + V + Sbjct: 88 KGAEQLRLPRMPRNHNRIRTLHPRYTFDEFMVGDSNALAYSACEAIATGTTQAEPCVFIN 147 Query: 71 GPSGSGKSCLANIWS-----------------DKSRSTRFSNI----AKSLDSILIDTRK 109 +G GKS L + + + + +I + Sbjct: 148 AGTGLGKSHLTHAVAHHLYNNAPGTRLCCLTSQQLTAELVHHIRNNSMEQFKEKFQRRCD 207 Query: 110 PVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL----CSRL 162 +L+ED+ L +L ++S+ +L T P +PDL SRL Sbjct: 208 VLLVEDVQTLSGRSKTQVELAEAVDSLLDSGRRVLFTGSRSPRE----IPDLDEGVRSRL 263 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 + V I+ PD +I + ++ +D+++ AYI +++ + E + + Sbjct: 264 ASGLVTTINPPDIKTRRLIIRRKAVFHKLALDEEMVAYIAEKVRGDIRKVESAMVGLKAK 323 Query: 223 ALSRGMGITRSLAAEVLKETQQCD 246 A R + T + EV+ + Sbjct: 324 ANLRRVAPTMEMVREVVATVAGEE 347 >gi|255066616|ref|ZP_05318471.1| DNA replication initiator protein [Neisseria sicca ATCC 29256] gi|255049200|gb|EET44664.1| DNA replication initiator protein [Neisseria sicca ATCC 29256] Length = 516 Score = 89.8 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 37/254 (14%), Positives = 80/254 (31%), Gaps = 31/254 (12%) Query: 15 KQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVG 71 + + D + + EQ + D L+ A + P L G Sbjct: 165 EAQRDAEEARYEQTNL----SRDYTFDTLVEGKGNRLAAAAAQAIAENPGQGYNPFFLYG 220 Query: 72 PSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKPV 111 +G GK+ L ++ R + + S + Sbjct: 221 STGLGKTHLVQAIGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLL 280 Query: 112 LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168 +++DI + D + F++ N H L++T P L SR + Sbjct: 281 IIDDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTL 340 Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228 ++ P+ + ++ K I I+ + A ++ + ++ E +++ + Sbjct: 341 ELEPPELEMRVAILQKKAEAAGISIEDEAALFVANLIRSNVRELEGAFNRVSASSRFMNR 400 Query: 229 G-ITRSLAAEVLKE 241 I LA L++ Sbjct: 401 PVIDMDLARTALQD 414 >gi|112491279|pdb|2HCB|A Chain A, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus gi|112491280|pdb|2HCB|B Chain B, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus gi|112491281|pdb|2HCB|C Chain C, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus gi|112491282|pdb|2HCB|D Chain D, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus Length = 323 Score = 89.8 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 30/194 (15%), Positives = 74/194 (38%), Gaps = 25/194 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91 + ++ +V A ++ + + + G G+GK+ L ++++ Sbjct: 4 NPKYTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR 63 Query: 92 RFSNIAKSLDSILID------------------TRKPVLLEDIDLLDFNDT---QLFHII 130 + I S D + +LL+D+ L + + FHI Sbjct: 64 GYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGKERTQIEFFHIF 123 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N+++ + +++ + P L SR + +V+I L D+ K+I + + Sbjct: 124 NTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFN 182 Query: 191 IFIDKKLAAYIVQR 204 + + K++ Y+++ Sbjct: 183 LELRKEVIDYLLEN 196 >gi|24158831|pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication Initiation Factor Length = 324 Score = 89.8 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 30/194 (15%), Positives = 74/194 (38%), Gaps = 25/194 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91 + ++ +V A ++ + + + G G+GK+ L ++++ Sbjct: 5 NPKYTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 Query: 92 RFSNIAKSLDSILID------------------TRKPVLLEDIDLLDFNDT---QLFHII 130 + I S D + +LL+D+ L + + FHI Sbjct: 65 GYRVIYSSADDFAQAXVEHLKKGTINEFRNXYKSVDLLLLDDVQFLSGKERTQIEFFHIF 124 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N+++ + +++ + P L SR + +V+I L D+ K+I + + Sbjct: 125 NTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFN 183 Query: 191 IFIDKKLAAYIVQR 204 + + K++ Y+++ Sbjct: 184 LELRKEVIDYLLEN 197 >gi|15605842|ref|NP_213219.1| chromosome replication initiator protein DnaA [Aquifex aeolicus VF5] gi|14194659|sp|O66659|DNAA_AQUAE RecName: Full=Chromosomal replication initiator protein DnaA gi|2983000|gb|AAC06612.1| chromosome replication initiator protein DnaA [Aquifex aeolicus VF5] Length = 399 Score = 89.8 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 30/194 (15%), Positives = 74/194 (38%), Gaps = 25/194 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91 + ++ +V A ++ + + + G G+GK+ L ++++ Sbjct: 80 NPKYTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR 139 Query: 92 RFSNIAKSLDSILID------------------TRKPVLLEDIDLLDFNDT---QLFHII 130 + I S D + +LL+D+ L + + FHI Sbjct: 140 GYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGKERTQIEFFHIF 199 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N+++ + +++ + P L SR + +V+I L D+ K+I + + Sbjct: 200 NTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFN 258 Query: 191 IFIDKKLAAYIVQR 204 + + K++ Y+++ Sbjct: 259 LELRKEVIDYLLEN 272 >gi|91785914|ref|YP_546866.1| chromosomal replication initiation protein [Polaromonas sp. JS666] gi|91695139|gb|ABE41968.1| chromosomal replication initiator protein DnaA [Polaromonas sp. JS666] Length = 464 Score = 89.4 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 87/234 (37%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIEQ---AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90 ++ D L+ +A A + S + + G G GK+ L + +K + Sbjct: 130 NSALTFDTLIEGTANRMGRAAALHVSSSLGQLYNPLFIYGGVGLGKTHLMHAIGNKLLAD 189 Query: 91 -----TRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDFND---TQLFH 128 + + + + ++ + +L++D+ D + F+ Sbjct: 190 NPAAKVLYIHAEQFVSDVVKAYQRKTFDEFKERYHSLDLLLIDDVQFFANKDRTQEEFFN 249 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++ S ++MT+ T+P L SR + V I P+ + ++++ Sbjct: 250 AFEALLTKKSHIVMTSDTYPKGLTDIHERLVSRFDSGLTVAIEPPELEMRVAILIRKAEA 309 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + +++A ++ + + ++ E + K+ + I+ LA E L++ Sbjct: 310 EGTVMPEEVAFFVAKNVRSNVRELEGALRKILAYSRFNLKEISIQLAREALRDL 363 >gi|326692341|ref|ZP_08229346.1| chromosomal replication initiation protein [Leuconostoc argentinum KCTC 3773] Length = 448 Score = 89.4 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 45/262 (17%), Positives = 88/262 (33%), Gaps = 41/262 (15%) Query: 18 NDQPKNKEEQ---LFF--SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVV---IL 69 PK+ Q L F + D +V + E A + + P RV ++ Sbjct: 88 ESLPKSTPIQTENLTFTRESDLNENFTFDKFVVGAGNENAYAIARAVAEDPGRVYNPYLI 147 Query: 70 VGPSGSGKSCLANIWSDKSRSTR-------------FSNIAKSLDSILIDTRK------- 109 G G GK+ L + T ++ +SL + T Sbjct: 148 YGGVGLGKTHLMQAIGNAYSKTTPSARIKYATAEDFLNDFTESLRAGEGATAAFKKEYRT 207 Query: 110 --PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK- 163 +L++DI + + F+ N + + ++MT+ P DL SRL Sbjct: 208 VDLLLIDDIQFWSGKEKVQEEFFNTFNVLTKTGKQIIMTSDKLPTEIV----DLQSRLTS 263 Query: 164 ---AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 A + I PD ++ + + I + I +++ ++ E + + Sbjct: 264 RFEAGISMDIQKPDLPTRVAILKNLAETDNLTIPNDVLELIADKIDSNIRTLEGTFHRFE 323 Query: 221 NLALSRGMGITRSLAAEVLKET 242 + R T+ A ++L + Sbjct: 324 AMLRFRNKPATKETAQQILGDL 345 >gi|254456286|ref|ZP_05069715.1| chromosomal replication initiator protein DnaA [Candidatus Pelagibacter sp. HTCC7211] gi|207083288|gb|EDZ60714.1| chromosomal replication initiator protein DnaA [Candidatus Pelagibacter sp. HTCC7211] Length = 469 Score = 89.4 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 34/210 (16%), Positives = 75/210 (35%), Gaps = 31/210 (14%) Query: 40 RDDLLVHSAIEQAVRLIDSWPSWPS--RVVILVGPSGSGKSCLAN--------------I 83 D+ ++ ++ + A S + + G G GK+ L N I Sbjct: 131 FDNFIIGTSNKLAYEASLKVSENTSHYNPLYIYGGVGMGKTHLLNSIGLELKDNNKVMFI 190 Query: 84 WSDKSRSTRFSNIAKSLDSILID---TRKPVLLEDIDLLDFND---TQLFHIINSIHQYD 137 +++ +I + + +L++DI + + + FH N++ Sbjct: 191 SAERFMYQFVKSIKANDMVKFKEYFRNTDILLIDDIQFISGKEAMQEEFFHTFNALLDKG 250 Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM------FADRQI 191 S ++++A P + SR VV I PD + +K++ K Q+ Sbjct: 251 SQIIVSADRAPNKLSRIQDRIKSRFSGGLVVDIQKPDLELRKKIVEKKTEELNSLYADQL 310 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 + K + +I + + +LV ++ Sbjct: 311 QVSKDIQDFISREIT---ASIRELVGAINR 337 >gi|323137249|ref|ZP_08072328.1| chromosomal replication initiator protein DnaA [Methylocystis sp. ATCC 49242] gi|322397607|gb|EFY00130.1| chromosomal replication initiator protein DnaA [Methylocystis sp. ATCC 49242] Length = 500 Score = 89.4 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 35/244 (14%), Positives = 76/244 (31%), Gaps = 31/244 (12%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDS-----WPSWP-SRVVILVGPSGSGKSCLANIWSD 86 P +S LV + + A P + G GK+ L + Sbjct: 156 PLDRRLSFSTFLVGPSNQLAYAAACRVAEARPGDAPIFNPLYAHAAVGLGKTHLLQALAH 215 Query: 87 KSRSTRFSNIAKSLDSIL------------------IDTRKPVLLEDIDLLDFN--DTQL 126 S R I + + + + ++++D+ L + Sbjct: 216 ASNDNRRRAIYLTAERFMSGFVSSLNAQTSIAFKERLRAIDMLIIDDVQFLQGKSIQQEF 275 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 H +N++ +++ A P + SR K V I D+ K++ Sbjct: 276 CHTLNALIDAGRQVVVAADRPPSELETLDERVLSRFKGGLCVDIGPLDESLRMKMLNARI 335 Query: 187 ADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 A Q + ++ AY+ + + + E V+++ G +T A +++ Sbjct: 336 AAAQESQPGFHVPPEVVAYVARTIVTNGRDLEGAVNRLLAHVTLNGAPLTIETAETAIRD 395 Query: 242 TQQC 245 + Sbjct: 396 LVRS 399 >gi|261363925|ref|ZP_05976808.1| DNA replication initiator protein [Neisseria mucosa ATCC 25996] gi|288567937|gb|EFC89497.1| DNA replication initiator protein [Neisseria mucosa ATCC 25996] Length = 516 Score = 89.4 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 37/254 (14%), Positives = 80/254 (31%), Gaps = 31/254 (12%) Query: 15 KQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVG 71 + + D + + EQ + D L+ A + P L G Sbjct: 165 EAQRDAEEARYEQTNL----SRDYTFDTLVEGKGNRLAAAAAQAIAENPGQGYNPFFLYG 220 Query: 72 PSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKPV 111 +G GK+ L ++ R + + S + Sbjct: 221 STGLGKTHLVQAIGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLL 280 Query: 112 LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168 +++DI + D + F++ N H L++T P L SR + Sbjct: 281 IIDDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTL 340 Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228 ++ P+ + ++ K I I+ + A ++ + ++ E +++ + Sbjct: 341 ELEPPELEMRVAILQKKAEAAGISIEDEAALFVANLIRSNVRELEGAFNRVSASSRFMNR 400 Query: 229 G-ITRSLAAEVLKE 241 I LA L++ Sbjct: 401 PVIDMDLARTALQD 414 >gi|297567993|ref|YP_003689337.1| chromosomal replication initiator protein DnaA [Desulfurivibrio alkaliphilus AHT2] gi|296923908|gb|ADH84718.1| chromosomal replication initiator protein DnaA [Desulfurivibrio alkaliphilus AHT2] Length = 451 Score = 89.4 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 40/242 (16%), Positives = 85/242 (35%), Gaps = 35/242 (14%) Query: 36 LGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWS------- 85 + D+ +V + A ++ + + V + +G GKS LA+ + Sbjct: 115 PRYTFDEFMVGESNALAFTACEAIAAGGAEAEPCVFINAGTGLGKSHLAHAVAHHLYNHS 174 Query: 86 ----------DKSRSTRF----SNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFH 128 + + SN +L+ED+ L +L Sbjct: 175 PSTRLCCLTTQQLTAELVRHIRSNTMDQFKEKFQRQCDVLLVEDVQTLSGRGKTQVELAE 234 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDL----CSRLKAATVVKISLPDDDFLEKVIVK 184 ++ + + +L T P +PDL SRL + V I+ PD +I + Sbjct: 235 AVDCLLENGRRVLFTGAVGPRE----IPDLDDGVRSRLASGLVTSINPPDMQTRRLIIQR 290 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 A ++ +D+++ ++ +++ + E + + A R T ++ EV+ Sbjct: 291 KAAYHKLALDEEMVEFLAEKVRGDVRRLESAIVGLKAKANLRKSQPTMAMVKEVVATVVG 350 Query: 245 CD 246 D Sbjct: 351 GD 352 >gi|256545950|ref|ZP_05473305.1| ATPase involved in DNA replication initiation [Anaerococcus vaginalis ATCC 51170] gi|256398372|gb|EEU11994.1| ATPase involved in DNA replication initiation [Anaerococcus vaginalis ATCC 51170] Length = 464 Score = 89.4 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 34/207 (16%), Positives = 69/207 (33%), Gaps = 34/207 (16%) Query: 42 DLLVHSAIEQAVRLIDSWPSW--------PSRVVILVGPSGSGKSCLANIWS-------- 85 + + + + A+ S + + G SG GK+ L + Sbjct: 132 NFVQGKSNQLALAASQSVAENMANYKVSRVYNPLFIYGASGLGKTHLMQAIAHEILEKRD 191 Query: 86 ---------DKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLD---FNDTQLFHII 130 +K + S + + + + V L++DI + + FH Sbjct: 192 DCYVMYLSSEKFTNEMISAVRNNTNEEFRKKYRSVDMLLIDDIQFIANKTGTQEEFFHTF 251 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 ++ +++++ P L SR +V IS PD + ++ K + Sbjct: 252 EDLYNQGKQIVISSDRPPKEIKHLEDRLVSRFGWGIIVDISKPDFETRVAILQKKQDELG 311 Query: 191 IFIDKKLAAYIVQRME---RSLVFAEK 214 +D K+ YI + +E R L A Sbjct: 312 AVVDYKILEYIAENIETNIRDLEGALA 338 >gi|24753761|gb|AAN64009.1|AF434658_6 chromosomal replication initiation protein A [Leptospira interrogans] Length = 443 Score = 89.4 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 26/217 (11%), Positives = 67/217 (30%), Gaps = 30/217 (13%) Query: 31 SFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANI---- 83 F + + +V A P+ + + + G G GK+ L + Sbjct: 103 DFQFNPDYTFETFIVGDCNRLAYTAAKECVRKPAEINP-LYIFGSVGVGKTHLLHAIGSE 161 Query: 84 -----------------WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---- 122 + ++ R S I + ++++DI LL N Sbjct: 162 LTKKDPWKTVCYVDISSFMNEFRFALQSRELIESFKIKYQSYNCLIVDDIQLLSTNAEKT 221 Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 + F + N + + +++ + + L SR I PD + + ++ Sbjct: 222 QDEFFALFNFLFERKRQIVIASDRPSSELAIH-ERLKSRFVTGVQADIQYPDREIRKGIV 280 Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 + + + + ++ ++E ++ + Sbjct: 281 THHSKIMDLGLSEDILDFLADQIEEDTRLLLGALNDI 317 >gi|24212701|ref|NP_710182.1| chromosomal replication initiation protein A [Leptospira interrogans serovar Lai str. 56601] gi|45655915|ref|YP_000001.1| chromosomal replication initiator protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|61212641|sp|Q72WD6|DNAA_LEPIC RecName: Full=Chromosomal replication initiator protein DnaA gi|61212842|sp|Q8FA34|DNAA_LEPIN RecName: Full=Chromosomal replication initiator protein DnaA gi|24193332|gb|AAN47200.1| chromosomal replication initiation protein A [Leptospira interrogans serovar Lai str. 56601] gi|45599148|gb|AAS68638.1| chromosomal replication initiator protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 443 Score = 89.4 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 26/217 (11%), Positives = 67/217 (30%), Gaps = 30/217 (13%) Query: 31 SFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANI---- 83 F + + +V A P+ + + + G G GK+ L + Sbjct: 103 DFQFNPDYTFETFIVGDCNRLAYTAAKECVRKPAEINP-LYIFGSVGVGKTHLLHAIGSE 161 Query: 84 -----------------WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---- 122 + ++ R S I + ++++DI LL N Sbjct: 162 LTKKDPWKTVCYVDISSFMNEFRFALQSRELIESFKIKYQSYNCLIVDDIQLLSTNAEKT 221 Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 + F + N + + +++ + + L SR I PD + + ++ Sbjct: 222 QDEFFALFNFLFERKRQIVIASDRPSSELAIH-ERLKSRFVTGVQADIQYPDREIRKGIV 280 Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 + + + + ++ ++E ++ + Sbjct: 281 THHSKIMDLGLSEDILDFLADQIEEDTRLLLGALNDI 317 >gi|296283101|ref|ZP_06861099.1| chromosomal replication initiation protein [Citromicrobium bathyomarinum JL354] Length = 484 Score = 89.4 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 33/234 (14%), Positives = 75/234 (32%), Gaps = 27/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKS--- 88 ++ + A A + + + +G GK+ L + + Sbjct: 149 DASLTFAAFVTGDANVLARNAAQRMAANEKPQFSPLYIKAATGQGKTHLLHAIGHQFLSQ 208 Query: 89 --RSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLL---DFNDTQLFH 128 R+ F A+ + K +L++D+ + +L + Sbjct: 209 HPRARIFYCSAERFMVEFVQALKQNRMIEFKTRLRGFDLLLVDDLQFIIGKASAQEELLY 268 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 I+ + L+ A P + P L SRL V I D + ++ Sbjct: 269 TIDHLLSEGKRLVFAADRAPQALDSVEPRLLSRLSMGLVADIQPADLELRRSILESKLTR 328 Query: 189 -RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + + + ++ + + R++ ++K+ A G ++ LA E L + Sbjct: 329 FAPLSVPDDVVDFLARTITRNVRELVGGLNKLIAYAQLTGQPVSLQLAEEQLTD 382 >gi|282848766|ref|ZP_06258161.1| chromosomal replication initiator protein DnaA [Veillonella parvula ATCC 17745] gi|282581552|gb|EFB86940.1| chromosomal replication initiator protein DnaA [Veillonella parvula ATCC 17745] Length = 524 Score = 89.4 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 36/239 (15%), Positives = 82/239 (34%), Gaps = 34/239 (14%) Query: 15 KQKNDQPKNKEEQLFFSFPR---CLGISRDDLLVHSAIEQ---AVRLIDSWPSWPSRVVI 68 K P + + + D+ + +A A + + +P + Sbjct: 158 KPSETTPTLQSDNVPVDLSLSNLNPAYRFDNYVTGNANRIPFGAAQNVAEFPGGDYNPLF 217 Query: 69 LVGPSGSGKSCLANIW--SDKSRSTRFSNIAKSLDSIL------------------IDTR 108 + GPSG GK+ L + + K ++ + ++ + Sbjct: 218 IYGPSGLGKTHLMHAIGNAIKENHPHMKVMSITSENFMNIFVETLQRNQGKLFRNTFRNI 277 Query: 109 KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 ++++DI L+ + T+LF+ N + + +++T+ T P L SR +A Sbjct: 278 DVLMIDDIQFLESRESTKTELFNTFNELLNNNKQIVLTSDTMPNDMEQFEDRLRSRFQAG 337 Query: 166 TVVKISLPDDDFLEKVIVKMFAD-----RQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 + + PD + + + R I ID Y+ + ++ + K+ Sbjct: 338 YIATMENPDLETRIAIFRSLLEREYKKNRIIRIDNDSINYVALQFSENVRVLQGAFTKL 396 >gi|330902925|gb|EGH33868.1| chromosomal replication initiation protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 180 Score = 89.1 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 65/177 (36%), Gaps = 27/177 (15%) Query: 67 VILVGPSGSGKSCLANIW----------------------SDKSRSTRFSNIAKSLDSIL 104 + L G G GK+ L + +D ++ + + I + Sbjct: 5 LFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKR--F 62 Query: 105 IDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161 + +L++DI + + FH N++ + +++T+ +P L SR Sbjct: 63 YRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKSR 122 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218 V + P+ + +++K ++ + A +I QR+ ++ E + + Sbjct: 123 FGWGLTVAVEPPELETRVAILMKKADQAKVDLPHDAAFFIAQRIRSNVRELEGALKR 179 >gi|269797070|ref|YP_003310970.1| chromosomal replication initiator protein DnaA [Veillonella parvula DSM 2008] gi|269093699|gb|ACZ23690.1| chromosomal replication initiator protein DnaA [Veillonella parvula DSM 2008] Length = 524 Score = 89.1 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 40/250 (16%), Positives = 86/250 (34%), Gaps = 42/250 (16%) Query: 12 VPDKQKNDQPKNKEE-----Q---LFFSFPR---CLGISRDDLLVHSAIEQ---AVRLID 57 +PD+ PK E Q + D+ + +A A + + Sbjct: 147 IPDEPMIATPKKPTETMSTLQSDNVPVDLSLSNLNPAYRFDNYVTGNANRIPFGAAQNVA 206 Query: 58 SWPSWPSRVVILVGPSGSGKSCLANIW--SDKSRSTRFSNIAKSLDSIL----------- 104 +P + + GPSG GK+ L + + K ++ + ++ + Sbjct: 207 EFPGGDYNPLFIYGPSGLGKTHLMHAIGNAIKENHPHMKVMSITSENFMNIFVETLQRNQ 266 Query: 105 -------IDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 ++++DI L+ + T+LF+ N + + +++T+ T P Sbjct: 267 GKLFRNTFRNIDVLMIDDIQFLESRESTKTELFNTFNELLNNNKQIVLTSDTMPNDMEQF 326 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD-----RQIFIDKKLAAYIVQRMERSL 209 L SR +A + + PD + + + R I ID Y+ + ++ Sbjct: 327 EDRLRSRFQAGYIATMENPDLETRIAIFRSLLEREYKKNRIIRIDNDSINYVALQFSENV 386 Query: 210 VFAEKLVDKM 219 + K+ Sbjct: 387 RVLQGAFTKL 396 >gi|332531209|ref|ZP_08407122.1| chromosomal replication initiation protein [Hylemonella gracilis ATCC 19624] gi|332039316|gb|EGI75729.1| chromosomal replication initiation protein [Hylemonella gracilis ATCC 19624] Length = 477 Score = 89.1 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 29/199 (14%), Positives = 76/199 (38%), Gaps = 23/199 (11%) Query: 67 VILVGPSGSGKSCLANI-----WSDKSRSTRFSNIAKSLDSILIDTR------------- 108 + + G +G GK+ L + ++K + A+ + ++ Sbjct: 178 LFIYGSTGLGKTHLIHAVGNRLLAEKPGAKVLYTHAEWFVTDVVKAYQRKTFDEFKDKYH 237 Query: 109 --KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 +L++D+ D + F+ ++ S ++MT+ T+P L SR Sbjct: 238 SLDLLLIDDVQFFAGKDRTQEEFFNAFEALLAKKSHIVMTSDTYPKGLLDINQRLVSRFD 297 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + V I P+ + +++ + +++A ++ + + ++ E + K+ + Sbjct: 298 SGLTVAIEPPELEMRVAILINKAQSEGASMPEEVAFFVAKNVRSNVRELEGALRKILAYS 357 Query: 224 LSRGMGITRSLAAEVLKET 242 ++ LA E L++ Sbjct: 358 RFNQKEVSIQLAREALRDL 376 >gi|329847538|ref|ZP_08262566.1| chromosomal replication initiator protein DnaA [Asticcacaulis biprosthecum C19] gi|328842601|gb|EGF92170.1| chromosomal replication initiator protein DnaA [Asticcacaulis biprosthecum C19] Length = 433 Score = 89.1 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 84/236 (35%), Gaps = 32/236 (13%) Query: 37 GISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANI--WSDKS--- 88 ++ D + E A + + SW V GP G GK+ L N W ++ Sbjct: 93 RLTFDTFVPGRGNEFAYTMSRQVASWADGHFNPVFFHGPYGYGKTHLLNAIGWEAQAKRP 152 Query: 89 RSTRFSNIAKSLDSILIDT---------------RKPVLLEDIDLLDF---NDTQLFHII 130 + A+ S + +L++D+ + + +LFH + Sbjct: 153 DARIVYLTAEKFTSTFVKALMDKSTSAFKDEVRGADLLLVDDVHFIGGKTSSQEELFHTL 212 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK---MFA 187 S+ + + ++ TA P L S L + V + + D ++ + + Sbjct: 213 TSLIENNRRVVFTADRPPTQLNEIEARLRSHLSSGLVCALDVADQSLRMGIVERKLGQLS 272 Query: 188 DR-QIF--IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 R + ++ ++ R+ S+ E V+ + A +R +T A +L+ Sbjct: 273 QRLGVAQCPRAEVMQFLADRVPGSIRELEGAVNTLVASAGARLGSLTLEEAMALLQ 328 >gi|297748405|gb|ADI50951.1| DnaA [Chlamydia trachomatis D-EC] gi|297749285|gb|ADI51963.1| DnaA [Chlamydia trachomatis D-LC] Length = 486 Score = 89.1 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 43/279 (15%), Positives = 97/279 (34%), Gaps = 50/279 (17%) Query: 4 MKEDYSFFVPDKQKND---QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQ---AVRLID 57 +K P K +NK+ QL + D+ + + + A I Sbjct: 116 IKRSSPLVTPSIAKPATEVSEENKDFQLKLN----GAYRFDNFIEGPSNQFVKSAALGIA 171 Query: 58 SWPSWPSRVVILVGPSGSGKSCLAN--------------IWSDKSRSTRFSNIAKSLDSI 103 + P + + G G GK+ L + I + + +++ L Sbjct: 172 ARPGRSYNPLFIHGGVGLGKTHLLHAVGHYVREHHKNLRIHCITTEAF-INDLVHHLRVK 230 Query: 104 LID-------TRKPVLLEDI----DLLDFNDT------QLFHIINSIHQYDSSLLMTART 146 ID + +L++DI + +F + L H+ +++T+ Sbjct: 231 SIDKMKNFYRSLDLLLVDDIQFLQNRQNFEEEFCNTFETLIHL-------SKQIVVTSDK 283 Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206 P + + +R++ V + +PD + ++ + + I ++A YI + Sbjct: 284 PPGQLKLS-ERIIARMEWGLVAHVGVPDLETRVAILQHKAEQKGLNIPNEIAFYIADHVY 342 Query: 207 RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 ++ E ++K+ L +T + + LKE + Sbjct: 343 GNVRQLEGAINKLTAYCLLFNKPLTETTVRDTLKELFRA 381 >gi|237802698|ref|YP_002887892.1| chromosomal replication initiation protein [Chlamydia trachomatis B/Jali20/OT] gi|231273932|emb|CAX10724.1| Chromosomal replication initiation protein [Chlamydia trachomatis B/Jali20/OT] Length = 455 Score = 89.1 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 43/279 (15%), Positives = 97/279 (34%), Gaps = 50/279 (17%) Query: 4 MKEDYSFFVPDKQKND---QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQ---AVRLID 57 +K P K +NK+ QL + D+ + + + A I Sbjct: 85 IKRSSPLVTPSIAKPATEVSEENKDFQLKLN----GAYRFDNFIEGPSNQFVKSAALGIA 140 Query: 58 SWPSWPSRVVILVGPSGSGKSCLAN--------------IWSDKSRSTRFSNIAKSLDSI 103 + P + + G G GK+ L + I + + +++ L Sbjct: 141 ARPGRSYNPLFIHGGVGLGKTHLLHAVGHYVREHHKNLRIHCITTEAF-INDLVHHLRVK 199 Query: 104 LID-------TRKPVLLEDI----DLLDFNDT------QLFHIINSIHQYDSSLLMTART 146 ID + +L++DI + +F + L H+ +++T+ Sbjct: 200 SIDKMKNFYRSLDLLLVDDIQFLQNRQNFEEEFCNTFETLIHL-------SKQIVVTSDK 252 Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206 P + + +R++ V + +PD + ++ + + I ++A YI + Sbjct: 253 PPGQLKLS-ERIIARMEWGLVAHVGVPDLETRVAILQHKAEQKGLNIPNEIAFYIADHVY 311 Query: 207 RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 ++ E ++K+ L +T + + LKE + Sbjct: 312 GNVRQLEGAINKLTAYCLLFNKPLTETTVRDTLKELFRA 350 >gi|15604996|ref|NP_219780.1| chromosomal replication initiation protein [Chlamydia trachomatis D/UW-3/CX] gi|76788997|ref|YP_328083.1| chromosomal replication initiation protein [Chlamydia trachomatis A/HAR-13] gi|237804620|ref|YP_002888774.1| chromosomal replication initiation protein [Chlamydia trachomatis B/TZ1A828/OT] gi|255311076|ref|ZP_05353646.1| chromosomal replication initiation protein [Chlamydia trachomatis 6276] gi|255317377|ref|ZP_05358623.1| chromosomal replication initiation protein [Chlamydia trachomatis 6276s] gi|255348635|ref|ZP_05380642.1| chromosomal replication initiation protein [Chlamydia trachomatis 70] gi|255503175|ref|ZP_05381565.1| chromosomal replication initiation protein [Chlamydia trachomatis 70s] gi|255506853|ref|ZP_05382492.1| chromosomal replication initiation protein [Chlamydia trachomatis D(s)2923] gi|14194663|sp|O84277|DNAA2_CHLTR RecName: Full=Chromosomal replication initiator protein DnaA 2 gi|3328688|gb|AAC67868.1| Replication Initiation Factor [Chlamydia trachomatis D/UW-3/CX] gi|76167527|gb|AAX50535.1| DnaA [Chlamydia trachomatis A/HAR-13] gi|231272920|emb|CAX09831.1| Chromosomal replication initiation protein [Chlamydia trachomatis B/TZ1A828/OT] gi|289525314|emb|CBJ14790.1| Chromosomal replication initiation protein [Chlamydia trachomatis Sweden2] gi|296434864|gb|ADH17042.1| chromosomal replication initiation protein [Chlamydia trachomatis E/150] gi|296435791|gb|ADH17965.1| chromosomal replication initiation protein [Chlamydia trachomatis G/9768] gi|296436716|gb|ADH18886.1| chromosomal replication initiation protein [Chlamydia trachomatis G/11222] gi|296437651|gb|ADH19812.1| chromosomal replication initiation protein [Chlamydia trachomatis G/11074] gi|296438584|gb|ADH20737.1| chromosomal replication initiation protein [Chlamydia trachomatis E/11023] gi|297140150|gb|ADH96908.1| chromosomal replication initiation protein [Chlamydia trachomatis G/9301] Length = 455 Score = 89.1 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 43/279 (15%), Positives = 97/279 (34%), Gaps = 50/279 (17%) Query: 4 MKEDYSFFVPDKQKND---QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQ---AVRLID 57 +K P K +NK+ QL + D+ + + + A I Sbjct: 85 IKRSSPLVTPSIAKPATEVSEENKDFQLKLN----GAYRFDNFIEGPSNQFVKSAALGIA 140 Query: 58 SWPSWPSRVVILVGPSGSGKSCLAN--------------IWSDKSRSTRFSNIAKSLDSI 103 + P + + G G GK+ L + I + + +++ L Sbjct: 141 ARPGRSYNPLFIHGGVGLGKTHLLHAVGHYVREHHKNLRIHCITTEAF-INDLVHHLRVK 199 Query: 104 LID-------TRKPVLLEDI----DLLDFNDT------QLFHIINSIHQYDSSLLMTART 146 ID + +L++DI + +F + L H+ +++T+ Sbjct: 200 SIDKMKNFYRSLDLLLVDDIQFLQNRQNFEEEFCNTFETLIHL-------SKQIVVTSDK 252 Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206 P + + +R++ V + +PD + ++ + + I ++A YI + Sbjct: 253 PPGQLKLS-ERIIARMEWGLVAHVGVPDLETRVAILQHKAEQKGLNIPNEIAFYIADHVY 311 Query: 207 RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 ++ E ++K+ L +T + + LKE + Sbjct: 312 GNVRQLEGAINKLTAYCLLFNKPLTETTVRDTLKELFRA 350 >gi|307710359|ref|ZP_07646800.1| chromosomal replication initiator protein DnaA [Streptococcus mitis SK564] gi|307618951|gb|EFN98086.1| chromosomal replication initiator protein DnaA [Streptococcus mitis SK564] Length = 453 Score = 89.1 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 35/242 (14%), Positives = 80/242 (33%), Gaps = 28/242 (11%) Query: 31 SFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87 + D+ + AV + + + + G G GK+ L N ++ Sbjct: 112 DTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTYNPLFIYGGPGLGKTHLLNAIGNE 171 Query: 88 -----SRSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLLDF----ND 123 + A+S + +D + +L++DI L Sbjct: 172 ILKNIPNARVKYIPAESFINDFLDHLRLGEMEKFKKTYRSLDLLLIDDIQSLSGKKVATQ 231 Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 + F+ N++H +++T+ P L +R I+ PD + ++ Sbjct: 232 EEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQTITPPDFETRIAILQ 291 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA-LSRGMGITRSLAAEVLKET 242 Y+ + + ++ E ++ + +A + IT +AAE ++ Sbjct: 292 SKTEHLGYNFQSDTLEYLAGQFDSNVRDLEGSINDITLIARVKNIKDITIDIAAEAIRAR 351 Query: 243 QQ 244 +Q Sbjct: 352 KQ 353 >gi|116514954|ref|YP_802583.1| DnaA [Buchnera aphidicola str. Cc (Cinara cedri)] gi|122285650|sp|Q058F9|DNAA_BUCCC RecName: Full=Chromosomal replication initiator protein DnaA gi|116256808|gb|ABJ90490.1| chromosomal replication initiator protein [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 437 Score = 89.1 bits (220), Expect = 6e-16, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 93/236 (39%), Gaps = 28/236 (11%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAV----RLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 Q++ + + + + A + + ++ + + L G +G GK+ L + Sbjct: 96 QIYLHSEINKKYQFHNFIQGQSNQLAYYSSYKFTKNLKNFYNP-LFLYGNTGLGKTHLLH 154 Query: 83 IWSDK-------------SRSTRFSNIAKSLDSILID-------TRKPVLLEDIDLLD-- 120 +K N+ SL + ID + +LL+DI Sbjct: 155 AIGNKFLIKNKKKKVIYIHSENFIQNMVNSLKNNSIDKFKNYYRSIDVLLLDDIQFFSNK 214 Query: 121 -FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179 + +LF+ N++ +++TA +P L SR K + I+ P+ Sbjct: 215 KKSQEELFNTFNTLFNKQQKIVLTADCYPEYISGITEQLKSRFKWGLTISINPPELKTRI 274 Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235 K+++ + +I + ++A YI +++ ++ E ++ K+ L++ IT +L Sbjct: 275 KILLHKAYENKILLSYEVAKYIAKKIFSNVRELEGILKKIQILSILNKEKITINLV 330 >gi|116326856|ref|YP_796576.1| chromosomal replication initiator protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116329803|ref|YP_799521.1| chromosomal replication initiator protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122282421|sp|Q04WF7|DNAA_LEPBJ RecName: Full=Chromosomal replication initiator protein DnaA gi|122285293|sp|Q056V2|DNAA_LEPBL RecName: Full=Chromosomal replication initiator protein DnaA gi|116119600|gb|ABJ77643.1| Chromosomal replication initiator protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116123492|gb|ABJ74763.1| Chromosomal replication initiator protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 437 Score = 89.1 bits (220), Expect = 6e-16, Method: Composition-based stats. Identities = 27/217 (12%), Positives = 67/217 (30%), Gaps = 30/217 (13%) Query: 31 SFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANI---- 83 F + + +V A P+ + + L G G GK+ L + Sbjct: 97 DFQFNPDYTFETFIVGDCNRLAYTAAKECVRKPAEINP-LYLFGSVGVGKTHLLHAIGSE 155 Query: 84 -----------------WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---- 122 + ++ R S I + +L++DI LL N Sbjct: 156 LIKKDPWKTVCYIDISSFMNEFRFALQSRELIESFKIKYQSYNCLLVDDIQLLSTNAEKT 215 Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 + F + N + + +++ + + L SR I P+ + + ++ Sbjct: 216 QDEFFALFNFLFERKRQIVIASDRPSSELTIH-ERLKSRFVTGVQADIQYPNKEIRKGIV 274 Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 + + + + ++ ++E ++ + Sbjct: 275 TSHSKIMDLGLSEDVLEFLADQIEEDTRLLLGALNDI 311 >gi|91205663|ref|YP_538018.1| chromosomal replication initiation protein [Rickettsia bellii RML369-C] gi|123084564|sp|Q1RI85|DNAA_RICBR RecName: Full=Chromosomal replication initiator protein DnaA gi|91069207|gb|ABE04929.1| Chromosomal replication initiator protein DnaA [Rickettsia bellii RML369-C] Length = 463 Score = 89.1 bits (220), Expect = 6e-16, Method: Composition-based stats. Identities = 33/242 (13%), Positives = 84/242 (34%), Gaps = 32/242 (13%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS-----RVVILVGPSGSGKSCLANI--WSDK 87 + + D+ +V + E A + + S + L G G GK+ L + W K Sbjct: 127 DIRFTFDNFVVGAPNELAYAVARAVAESSSAVSESNPLFLYGGVGLGKTHLMHAIGWYIK 186 Query: 88 SRSTRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQL 126 + I S + + K + +++DI + D + Sbjct: 187 QNNPSRKVIYMSAEKFMYQFVKALRNKEVMSFKEKFRSVDVLMIDDIQFICGKDSTQEEF 246 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH N++ + ++++ P + SRL V + + ++ Sbjct: 247 FHTFNTLIDNNRQMVISCDRSPSDLDDIEDRIKSRLGWGLVADVHSTTYELRLGILESKI 306 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR----SLAAEVLKET 242 + + K + ++ ++ ++ E ++K+ + IT ++ ++L+ Sbjct: 307 EQMNVKVPKDVIDFLASKIVSNVRELEGALNKVIAHSNFTAKEITLENTQNILRDLLRSN 366 Query: 243 QQ 244 ++ Sbjct: 367 ER 368 >gi|207108901|ref|ZP_03243063.1| chromosomal replication initiation protein [Helicobacter pylori HPKX_438_CA4C1] Length = 254 Score = 89.1 bits (220), Expect = 6e-16, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 76/199 (38%), Gaps = 21/199 (10%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV--------------- 111 ++ G +G GK+ + N + + + + + L D K + Sbjct: 1 MLFYGGTGLGKTHILNAIGNHALEKHKKVVLVTSEDFLTDFLKHLDNKTMDSFKAKYRHC 60 Query: 112 ---LLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 LL+D L + + FH N +H +++ + P + L SR + Sbjct: 61 DFFLLDDAQFLQGKPKLEEEFFHTFNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWG 120 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 K+ PD + ++ + QI + +++ YI Q + ++ E + K+ A Sbjct: 121 ITAKVMPPDLETKLSIVKQKCQLNQIILPEEVMEYIAQHISDNIRQMEGAIIKISVNANL 180 Query: 226 RGMGITRSLAAEVLKETQQ 244 I +LA VL++ Q+ Sbjct: 181 MNATIDLNLAKTVLEDLQK 199 >gi|293400058|ref|ZP_06644204.1| DNA replication initiator protein, ATPase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306458|gb|EFE47701.1| DNA replication initiator protein, ATPase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 451 Score = 88.7 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 86/232 (37%), Gaps = 28/232 (12%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN------------ 82 + D +V +A S +P + + + G SG GK+ L + Sbjct: 116 YTFDSFVVGKNNREAYAAAMSACHYPGKFNNPLFIFGNSGLGKTHLLHAIGNFVKENKPD 175 Query: 83 -----IWSDKSRSTRFSNIAKSLDSILID---TRKPVLLEDIDLL--DFNDTQLFHIINS 132 I+S+ + ++ + + + +L++DI L + F++ N Sbjct: 176 EKVLYIYSEDFVTLLIESMKNKTVEEVKEMICSVDYLLIDDIQRLKQSTSQEIFFNLYNK 235 Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ-- 190 + + +++T+ P L SR + V + P+ + + ++ K R+ Sbjct: 236 LVSDNKQIVITSDIHPTELKGIENRLISRFSSGLSVSVGSPEFETAKAILQKKMEGRKEE 295 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNLALSRGMGITRSLAAEVLKE 241 I I+ ++ Y+ R + E ++++ L I + E+ KE Sbjct: 296 IMIEDEVLDYLATRFSSDVRKLEGSLNELFFKAILYNPEKIDLAFTQEIFKE 347 >gi|284047387|ref|YP_003397726.1| chromosomal replication initiator protein DnaA [Acidaminococcus fermentans DSM 20731] gi|283951608|gb|ADB46411.1| chromosomal replication initiator protein DnaA [Acidaminococcus fermentans DSM 20731] Length = 386 Score = 88.7 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 38/264 (14%), Positives = 87/264 (32%), Gaps = 34/264 (12%) Query: 17 KNDQPKNKEE--------QLFFSFPRCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSR 65 + P E Q F + D+ +V ++ A + + P++ Sbjct: 22 EKTAPAAPPEKKSPASLPQKPFVTNLSPRYTFDNFVVGNSNRFAKAAAMAVANNPAFAYN 81 Query: 66 VVILVGPSGSGKSCLANIWSDKSR-----------------STRFSNIAKSLDSILIDTR 108 L SG GK+ L N ++ R + ++ + + Sbjct: 82 PFFLFSDSGLGKTHLMNAIGNQIRKNHPDMKILYISSETFTNELIESVEHNRLEAFREKY 141 Query: 109 KPV---LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 + + L++DI L + + FH N++ + + +++++ P + SR Sbjct: 142 RSIDVLLIDDIQFLRNRESTQEEFFHTFNTLEKANKQIIISSDRPPAELDTLEERMISRF 201 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 + I PD + ++ + ++ + I + ++ E +++ Sbjct: 202 NSGLTADIQHPDLETRMAILQNLAHTDKVPFPNDVILLIASSITSNIRELEGAYNRVCAY 261 Query: 223 ALSRGMGITRSLAAEVLKETQQCD 246 + IT L LKE D Sbjct: 262 STVSKEPITLELCRSALKELNLLD 285 >gi|330718062|ref|ZP_08312662.1| chromosomal replication initiator protein DnaA [Leuconostoc fallax KCTC 3537] Length = 448 Score = 88.7 bits (219), Expect = 7e-16, Method: Composition-based stats. Identities = 42/272 (15%), Positives = 92/272 (33%), Gaps = 36/272 (13%) Query: 2 NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPS 61 + +K + P K + P N + + + +V S EQA + + Sbjct: 79 SFIKPEIKIAQPQAIKQEIPDNPAFRRESDL--NEHFTFESWVVGSGNEQATAIARAVAE 136 Query: 62 WPS---RVVILVGPSGSGKSCLANIWSDKS-----RSTRFSNIAKSLDSILIDTRKP--- 110 P ++ G G GK+ L ++ ++ + + D+ + Sbjct: 137 EPGTNWNPYLIFGGVGLGKTHLMQAIGNEYAKTHPQARIKYATTEDFTNDFTDSLRAGEG 196 Query: 111 --------------VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 +L++DI L D + F+ N++ + ++MT+ P + Sbjct: 197 ATATFKRDYRTVDLLLIDDIQFLSGKDKIQEEFFNTFNALTKTGRQIVMTSDQLPKNIPD 256 Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---RSLV 210 L +R +A + I PD ++ + I + + I ++++ RSL Sbjct: 257 LQQRLTTRFEAGISMDILKPDLPTRVAILQNKAETDGLNIPRDVLELIAEKVDNNVRSLE 316 Query: 211 FAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 A + T+ A ++L + Sbjct: 317 GAFHKFEATLRF---MNKPATKETAQQILGDL 345 >gi|284988630|ref|YP_003407184.1| chromosomal replication initiator protein DnaA [Geodermatophilus obscurus DSM 43160] gi|284061875|gb|ADB72813.1| chromosomal replication initiator protein DnaA [Geodermatophilus obscurus DSM 43160] Length = 584 Score = 88.7 bits (219), Expect = 7e-16, Method: Composition-based stats. Identities = 32/234 (13%), Positives = 82/234 (35%), Gaps = 26/234 (11%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90 D ++ ++ A + P+ + + G SG GK+ L + + Sbjct: 245 NPKYVFDSFVIGNSNRFAHAAAVAVAEAPARAYNPLFIYGDSGLGKTHLLHAIGHYAARM 304 Query: 91 -----TRFSNIAKSLDSILIDTRKP--------------VLLEDI---DLLDFNDTQLFH 128 R+ + + + + +L++DI + + + FH Sbjct: 305 FPNVRVRYVSTEEFTNEFINLVHSGRAEDFRRRYRDIDFLLIDDIQFLERAERTQEEFFH 364 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++H +++T+ P L +R + + + PD + ++ K Sbjct: 365 TFNTLHNASKQIVITSDRAPKKLTTLEDRLRTRFEWGLITDVQAPDLETRIAILRKKAYG 424 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ + + +I +++ ++ E + ++ A + LA VLK+ Sbjct: 425 ERLQVPDPVLEFIASKVQTNIRELEGALIRVTAFASLNKQQVDLPLAELVLKDL 478 >gi|123965864|ref|YP_001010945.1| chromosomal replication initiation protein [Prochlorococcus marinus str. MIT 9515] gi|166214691|sp|A2BVM7|DNAA_PROM5 RecName: Full=Chromosomal replication initiator protein DnaA gi|123200230|gb|ABM71838.1| chromosomal replication initiator protein DnaA [Prochlorococcus marinus str. MIT 9515] Length = 463 Score = 88.7 bits (219), Expect = 7e-16, Method: Composition-based stats. Identities = 35/224 (15%), Positives = 75/224 (33%), Gaps = 26/224 (11%) Query: 43 LLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD-----KSRSTRFS 94 +V A + P R + + G G GK+ L + Sbjct: 133 FVVGPNSRMAHAAALAVAESPGREFNPLFICGGVGLGKTHLMQAIGHYRVEIDPEAKVLY 192 Query: 95 NIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINSIHQY 136 ++ S LI + + +L++DI L+ + + F+ N++++ Sbjct: 193 VSTETFSSDLIQSIRKDGMHVFKNKYRSVDLLLIDDIQFLEGKEYTQEEFFNTFNALYEA 252 Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196 +++ + P L SR + I PD + ++ K ++ + + Sbjct: 253 GKQIVIASDRPPSQIPKLQERLISRFSMGLIADIQPPDIETRMAILQKKAEQERMNLPRD 312 Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 L +I R ++ E + A G+ +T A +L Sbjct: 313 LVQFIAGRFSSNIRELEGAFTRAVAFASITGLPMTVQSIAPMLD 356 >gi|110003908|emb|CAK98248.1| putative chromosomal replication initiator protein dnaa [Spiroplasma citri] Length = 450 Score = 88.7 bits (219), Expect = 7e-16, Method: Composition-based stats. Identities = 39/240 (16%), Positives = 81/240 (33%), Gaps = 40/240 (16%) Query: 31 SFPRCLGISRDDLLVHSAI------EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 + + ++ + + AV L D W + + G SG GK+ L + Sbjct: 103 NLAYYENYTFENFVRGDSNHEAMQAALAVAL-DLGKKW--NPLFIYGDSGLGKTHLLHAI 159 Query: 85 SDKSR--------------------STRFSNIAKSLDSIL---IDTRKPVLLEDIDLLDF 121 +K + N + D +L++DI LL Sbjct: 160 ENKVNEIYKTNNRVKYLKADEFGKIAMDILNQGHEIIEAFKTSYDIYDCLLIDDIQLLAK 219 Query: 122 N---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD-DDF 177 + FHI NS + + +++T+ +P G + SR + + PD + Sbjct: 220 RNKTNELFFHIFNSYIEKNKQIVITSDKYPDDLGGFEARIISRFSYGLSIGLDSPDFETA 279 Query: 178 LEKVIVKMFADRQIFI-DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG---ITRS 233 L+ + K+ + + ++ +I + E + ++ LA+ IT + Sbjct: 280 LKILEQKLKHQNNLGLFSEESLEFIALNFNSDVRKLEGAIKRLLFLAVMNKKPNEIITLA 339 >gi|461941|sp|P34028|DNAA_SPICI RecName: Full=Chromosomal replication initiator protein DnaA gi|49346|emb|CAA79521.1| DnaA protein [Spiroplasma citri] gi|745456|prf||2016285A DnaA protein Length = 450 Score = 88.7 bits (219), Expect = 7e-16, Method: Composition-based stats. Identities = 39/240 (16%), Positives = 81/240 (33%), Gaps = 40/240 (16%) Query: 31 SFPRCLGISRDDLLVHSAI------EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 + + ++ + + AV L D W + + G SG GK+ L + Sbjct: 103 NLAYYENYTFENFVRGDSNHEAMQAALAVAL-DLGKKW--NPLFIYGDSGLGKTHLLHAI 159 Query: 85 SDKSR--------------------STRFSNIAKSLDSIL---IDTRKPVLLEDIDLLDF 121 +K + N + D +L++DI LL Sbjct: 160 ENKVNEIYKTNNRVKYLKADEFGKIAMDILNQGHEIIEAFKTSYDIYDCLLIDDIQLLAK 219 Query: 122 N---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD-DDF 177 + FHI NS + + +++T+ +P G + SR + + PD + Sbjct: 220 RNKTNELFFHIFNSYIEKNKQIVITSDKYPDDLGGFEARIISRFSYGLSIGLDSPDFETA 279 Query: 178 LEKVIVKMFADRQIFI-DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG---ITRS 233 L+ + K+ + + ++ +I + E + ++ LA+ IT + Sbjct: 280 LKILEQKLKHQNNLGLFSEESLEFIALNFNSDVRKLEGAIKRLLFLAVMNKKPNEIITLA 339 >gi|87307796|ref|ZP_01089939.1| chromosomal replication initiator protein dnaA [Blastopirellula marina DSM 3645] gi|87289410|gb|EAQ81301.1| chromosomal replication initiator protein dnaA [Blastopirellula marina DSM 3645] Length = 460 Score = 88.7 bits (219), Expect = 8e-16, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 90/233 (38%), Gaps = 27/233 (11%) Query: 39 SRDDLLVHSAI---EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN-IWSDKSRSTRFS 94 S + L+V A +I + P + + + GP GSGK+ L I+ + RS +F Sbjct: 121 SLEQLIVGECNKFASTAASMIMNRPGEINP-LFICGPQGSGKTHLLEGIYGEARRSKKFE 179 Query: 95 NI----AKSLDSILIDT---------------RKPVLLEDIDLLDF---NDTQLFHIINS 132 + A+ + +D ++++D+ T+L H ++S Sbjct: 180 RVVYLSAEQFTTYFLDALNGSGVANFRRKYRDADLLIIDDVQFFAGKRATRTELLHTLDS 239 Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 I + +++ A P P+L +R V ++ D D K+ K+ A R + Sbjct: 240 ITRRGGQIVLAADKRPTELSALGPELIARFSGGLVCEVHEIDRDTRRKMAEKLCASRDMN 299 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 + L ++ + ++++ A+S + ++A L + + Sbjct: 300 ASRGLLDWLADHLPGDARLMSGAMNRLWATAMSLDRPVDVAMAENALADMVRA 352 >gi|46446716|ref|YP_008081.1| chromosomal replication initiation protein [Candidatus Protochlamydia amoebophila UWE25] gi|61212966|sp|Q6MC93|DNAA1_PARUW RecName: Full=Chromosomal replication initiator protein DnaA 1 gi|46400357|emb|CAF23806.1| putative chromosomal replication initiator protein, dnaA [Candidatus Protochlamydia amoebophila UWE25] Length = 451 Score = 88.3 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 33/208 (15%), Positives = 76/208 (36%), Gaps = 29/208 (13%) Query: 67 VILVGPSGSGKSCL----ANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110 + L G GSGK+ L A+ + + D ++ R Sbjct: 149 IYLYGSGGSGKTHLLMSLAHALKAQGLKVIYVRAETFTDHVVTAIRAGEMSVFRQAYRNI 208 Query: 111 --VLLEDID---LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 +L++D+ + FH N++H +++ + P + P L SR + Sbjct: 209 DVLLVDDVHVFSRKGATQEEFFHTFNTLHLEGKQIILASECSPQDLQLIEPRLVSRFEWG 268 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNLAL 224 V+ + + +++ + K+A Y+++ + + K ++ + L L Sbjct: 269 IVLPLKPLRPGEMRNLLIAKAKALHFELPLKIADYLIETFKSNAKALIKGLEALVLRLHL 328 Query: 225 SRGMGI-------TRSLAAEVLKETQQC 245 I T++L ++++E Q+ Sbjct: 329 DAKHSITALSVTATKALLIDLIEEEQKT 356 >gi|289677080|ref|ZP_06497970.1| DNA replication initiation factor [Pseudomonas syringae pv. syringae FF5] Length = 140 Score = 88.3 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 48/140 (34%), Gaps = 17/140 (12%) Query: 24 KEEQLFFSFPRCLGISRDDLLVHSAIEQAV----RLIDSWPSWPSRVVILVGPSGSGKSC 79 K QL S + + A A+ RL ++ W ++ L G G G++ Sbjct: 2 KPIQLPLSVRLRDDATFVNYYPG-ANAAALGYVERLCEADAGWTESLIYLWGKDGVGRTH 60 Query: 80 LANIWSDKSRSTRFSNIAKSLDSIL---------IDTRKPVLLEDIDLLDFN---DTQLF 127 L + + L ++ ++ + V L+D+ + + LF Sbjct: 61 LLQAACLRFEQLGEPAVYLPLAEVIDEGIELFDHLEQYELVCLDDLQAIVGKPDWEEALF 120 Query: 128 HIINSIHQYDSSLLMTARTF 147 H+ N + LL+ A Sbjct: 121 HLFNRLRDSGRRLLIAASQS 140 >gi|33861122|ref|NP_892683.1| chromosomal replication initiation protein [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|61222626|sp|P0A3A2|DNAA_PROMP RecName: Full=Chromosomal replication initiator protein DnaA gi|61222628|sp|P0A3A3|DNAA_PROS9 RecName: Full=Chromosomal replication initiator protein DnaA gi|5616249|gb|AAD45692.1|AF158628_2 DnaA [Prochlorococcus marinus subsp. pastoris str. PCC 9511] gi|33639854|emb|CAE19024.1| chromosomal replication initiator protein DnaA [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 463 Score = 88.3 bits (218), Expect = 9e-16, Method: Composition-based stats. Identities = 35/224 (15%), Positives = 75/224 (33%), Gaps = 26/224 (11%) Query: 43 LLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD-----KSRSTRFS 94 +V A + P R + + G G GK+ L + Sbjct: 133 FVVGPNSRMAHAAALAVAESPGREFNPLFICGGVGLGKTHLMQAVGHYRVEIDPDAKVLY 192 Query: 95 NIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINSIHQY 136 ++ S LI + + +L++DI L+ + + F+ N++++ Sbjct: 193 VSTETFSSDLIQSIRKDGMHAFKNKYRSVDLLLIDDIQFLEGKEYTQEEFFNTFNALYEA 252 Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196 +++ + P L SR + I PD + ++ K ++ + + Sbjct: 253 GKQIVIASDRPPSQIPKLQERLISRFSMGLIADIQPPDIETRMAILQKKAEQERMNLPRD 312 Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 L +I R ++ E + A G+ +T A +L Sbjct: 313 LIQFIAGRFSSNIRELEGAFTRAVAFASITGLPMTVQSIAPMLD 356 >gi|37521042|ref|NP_924419.1| chromosomal replication initiation protein [Gloeobacter violaceus PCC 7421] gi|61212697|sp|Q7NKK4|DNAA_GLOVI RecName: Full=Chromosomal replication initiator protein DnaA gi|35212038|dbj|BAC89414.1| chromosomal replication initiator protein [Gloeobacter violaceus PCC 7421] Length = 442 Score = 88.3 bits (218), Expect = 9e-16, Method: Composition-based stats. Identities = 27/195 (13%), Positives = 64/195 (32%), Gaps = 26/195 (13%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSD----- 86 + +V + A + P + L G G GK+ L Sbjct: 106 NSKYTFSRFVVGANNRMAHVAALAVAEMPGCNYNPLFLCGGVGLGKTHLMQAIGHYRLDI 165 Query: 87 KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 +R+ + + LI+ + ++++DI ++ + + FH Sbjct: 166 DTRTKIAYVSTERFANELIEAIRRDAMQTFREHYRRVDLLMIDDIQFIEGKEYTQEEFFH 225 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++++ +++ + P L SR + I PD + ++ K Sbjct: 226 TFNALYESGKQIVIASDRPPQLIPRLQERLSSRFSMGLITDIQQPDIETRMAILQKKAEY 285 Query: 189 RQIFIDKKLAAYIVQ 203 +F+ + + +I Sbjct: 286 ENMFVPQDVIHHIAS 300 >gi|194476496|ref|YP_002048675.1| chromosomal replication initiation protein [Paulinella chromatophora] gi|171191503|gb|ACB42465.1| chromosomal replication initiation protein [Paulinella chromatophora] Length = 472 Score = 88.3 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 43/252 (17%), Positives = 90/252 (35%), Gaps = 31/252 (12%) Query: 16 QKNDQPKNKEEQLFFSFPR-CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVG 71 ++ P +E+L+ S P + +V A + P R + + G Sbjct: 115 RRISFPSENKERLYPSLPTLNKRYLFNRFVVGPNSRMAHAAALAVAESPGRCFNPLFICG 174 Query: 72 PSGSGKSCL--------------ANIW---SDKSRSTRFSNIAKSLDSILID---TRKPV 111 G GK+ L A I+ +++ + I K I + + Sbjct: 175 GVGLGKTHLMQAIGNYRLKIDPEARIFFISTEQFTNDLIQAIKKDGMQIFRECYRKADML 234 Query: 112 LLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168 L++DI ++ + FH N++++ D +++T+ P L SR + Sbjct: 235 LVDDIQFIEGKQYTQKEFFHTFNALYEADCQIVITSDRPPNQIPRLQERLVSRFSMGLIA 294 Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228 I PD + ++ K ++ + K L Y+ R ++ E + + A++ Sbjct: 295 DIQPPDLETRIAILNKKAEQEKMILSKDLVQYMAGRFSANIRELEGALTR----AIALAS 350 Query: 229 GITRSLAAEVLK 240 + + A L Sbjct: 351 ITSLPMTATSLA 362 >gi|331265439|ref|YP_004325069.1| chromosomal replication initiator protein [Streptococcus oralis Uo5] gi|326682111|emb|CBY99727.1| chromosomal replication initiator protein [Streptococcus oralis Uo5] Length = 453 Score = 87.9 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 33/238 (13%), Positives = 76/238 (31%), Gaps = 28/238 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91 + D+ + AV + + + + G G GK+ L N ++ Sbjct: 116 KEKYTFDNFIQGDGNVWAVSAALAVSEDLALTYNPLFIYGGPGLGKTHLLNAIGNEILKN 175 Query: 92 RFSNIAKSLDSILI--------------------DTRKPVLLEDIDLLDF----NDTQLF 127 K + + + +L++DI L + F Sbjct: 176 IPDARVKYIPAESFINDFLEHLRLGEMEKFKKTYRSLDLLLIDDIQSLSGKKVATQEEFF 235 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 + N++H +++T+ P L +R I+ PD + ++ Sbjct: 236 NTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQNITPPDFETRIAILQSKTE 295 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVLKETQQ 244 Y+ + + ++ E ++ + +A + IT +AAE ++ +Q Sbjct: 296 HLDYHFQSDTLEYLAGQFDSNVRELEGAINDITLIARVKKIKDITIDIAAEAIRARKQ 353 >gi|315612159|ref|ZP_07887074.1| DNA-directed DNA replication initiator protein [Streptococcus sanguinis ATCC 49296] gi|315315720|gb|EFU63757.1| DNA-directed DNA replication initiator protein [Streptococcus sanguinis ATCC 49296] Length = 453 Score = 87.9 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 33/238 (13%), Positives = 76/238 (31%), Gaps = 28/238 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91 + D+ + AV + + + + G G GK+ L N ++ Sbjct: 116 KEKYTFDNFIQGDGNVWAVSAALAVSEDLALTYNPLFIYGGPGLGKTHLLNAIGNEILKN 175 Query: 92 RFSNIAKSLDSILI--------------------DTRKPVLLEDIDLLDF----NDTQLF 127 K + + + +L++DI L + F Sbjct: 176 IPDARVKYIPAESFINDFLEHLRLGEMEKFKKTYRSLDLLLIDDIQSLSGKKVATQEEFF 235 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 + N++H +++T+ P L +R I+ PD + ++ Sbjct: 236 NTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQNITPPDFETRIAILQSKTE 295 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVLKETQQ 244 Y+ + + ++ E ++ + +A + IT +AAE ++ +Q Sbjct: 296 HLDYHFQSDTLEYLAGQFDSNVRELEGAINDITLIARVKKIKDITIDIAAEAIRARKQ 353 >gi|306826187|ref|ZP_07459522.1| DNA-directed DNA replication initiator protein [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431663|gb|EFM34644.1| DNA-directed DNA replication initiator protein [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 453 Score = 87.9 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 33/238 (13%), Positives = 76/238 (31%), Gaps = 28/238 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91 + D+ + AV + + + + G G GK+ L N ++ Sbjct: 116 KEKYTFDNFIQGDGNVWAVSAALAVSEDLALTYNPLFIYGGPGLGKTHLLNAIGNEILKN 175 Query: 92 RFSNIAKSLDSILI--------------------DTRKPVLLEDIDLLDF----NDTQLF 127 K + + + +L++DI L + F Sbjct: 176 IPDARVKYIPAESFINDFLEHLRLGEMEKFKKTYRSLDLLLIDDIQSLSGKKVATQEEFF 235 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 + N++H +++T+ P L +R I+ PD + ++ Sbjct: 236 NTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQNITPPDFETRIAILQSKTE 295 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVLKETQQ 244 Y+ + + ++ E ++ + +A + IT +AAE ++ +Q Sbjct: 296 HLDYHFQSDTLEYLAGQFDSNVRELEGAINDITLIARVKKIKDITIDIAAEAIRARKQ 353 >gi|306828596|ref|ZP_07461790.1| DNA-directed DNA replication initiator protein [Streptococcus mitis ATCC 6249] gi|304429204|gb|EFM32290.1| DNA-directed DNA replication initiator protein [Streptococcus mitis ATCC 6249] Length = 453 Score = 87.9 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 33/238 (13%), Positives = 76/238 (31%), Gaps = 28/238 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91 + D+ + AV + + + + G G GK+ L N ++ Sbjct: 116 KEKYTFDNFIQGDGNVWAVSAALAVSEDLALTYNPLFIYGGPGLGKTHLLNAIGNEILKN 175 Query: 92 RFSNIAKSLDSILI--------------------DTRKPVLLEDIDLLDF----NDTQLF 127 K + + + +L++DI L + F Sbjct: 176 IPDARVKYIPAESFINDFLEHLRLGEMEKFKKTYRSLDLLLIDDIQSLSGKKVATQEEFF 235 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 + N++H +++T+ P L +R I+ PD + ++ Sbjct: 236 NTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQNITPPDFETRIAILQSKTE 295 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVLKETQQ 244 Y+ + + ++ E ++ + +A + IT +AAE ++ +Q Sbjct: 296 HLDYHFQSDTLEYLAGQFDSNVRELEGAINDITLIARVKKIKDITIDIAAEAIRARKQ 353 >gi|293364516|ref|ZP_06611241.1| DNA-directed DNA replication initiator protein [Streptococcus oralis ATCC 35037] gi|307702806|ref|ZP_07639756.1| chromosomal replication initiator protein DnaA [Streptococcus oralis ATCC 35037] gi|291317024|gb|EFE57452.1| DNA-directed DNA replication initiator protein [Streptococcus oralis ATCC 35037] gi|307623662|gb|EFO02649.1| chromosomal replication initiator protein DnaA [Streptococcus oralis ATCC 35037] Length = 453 Score = 87.9 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 33/238 (13%), Positives = 76/238 (31%), Gaps = 28/238 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91 + D+ + AV + + + + G G GK+ L N ++ Sbjct: 116 KEKYTFDNFIQGDGNVWAVSAALAVSEDLALTYNPLFIYGGPGLGKTHLLNAIGNEILKN 175 Query: 92 RFSNIAKSLDSILI--------------------DTRKPVLLEDIDLLDF----NDTQLF 127 K + + + +L++DI L + F Sbjct: 176 IPDARVKYIPAESFINDFLEHLRLGEMEKFKKTYRSLDLLLIDDIQSLSGKKVATQEEFF 235 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 + N++H +++T+ P L +R I+ PD + ++ Sbjct: 236 NTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQNITPPDFETRIAILQSKTE 295 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVLKETQQ 244 Y+ + + ++ E ++ + +A + IT +AAE ++ +Q Sbjct: 296 HLDYHFQSDTLEYLAGQFDSNVRELEGAINDITLIARVKKIKDITIDIAAEAIRARKQ 353 >gi|298290591|ref|YP_003692530.1| chromosomal replication initiator protein DnaA [Starkeya novella DSM 506] gi|296927102|gb|ADH87911.1| chromosomal replication initiator protein DnaA [Starkeya novella DSM 506] Length = 503 Score = 87.9 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 30/244 (12%), Positives = 76/244 (31%), Gaps = 31/244 (12%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV------VILVGPSGSGKSCLANIWSD 86 P ++ + + A P+ + L G GK+ L + Sbjct: 160 PLDPRLTFASYRLGESNRLAHAAAQKVAGAPAGSGPVFNPLYLHAAVGLGKTHLLQAIAA 219 Query: 87 KSRSTRFSNIAKSLDS------ILIDTRKPVL----LEDIDLLDFNDTQLF--------- 127 + + + + ++ + L ID L +D Q Sbjct: 220 AGAENGRRVVYLTAERFMYGFVAALKSQSALAFKEQLRGIDTLVIDDLQFLQGKSVQQEF 279 Query: 128 -HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 H +N++ +++ A P + SRL VV+I+ D++ +++ Sbjct: 280 CHTLNALMDSGRQVVIAADRPPAELDALEERVRSRLAGGLVVEIAPLDEELKLEILAART 339 Query: 187 A-----DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 A + + +I + ++ + ++++ IT +A +++ Sbjct: 340 ASLGQQHPGFNVPGDVLGFIARHCGQNGRDLDGALNRLLAHNQLTSRAITLEMAETAVRD 399 Query: 242 TQQC 245 + Sbjct: 400 LVRS 403 >gi|166154486|ref|YP_001654604.1| chromosomal replication initiation protein [Chlamydia trachomatis 434/Bu] gi|166155361|ref|YP_001653616.1| chromosomal replication initiation protein [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335746|ref|ZP_07223990.1| chromosomal replication initiation protein [Chlamydia trachomatis L2tet1] gi|165930474|emb|CAP03967.1| Chromosomal replication initiation protein [Chlamydia trachomatis 434/Bu] gi|165931349|emb|CAP06921.1| Chromosomal replication initiation protein [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 455 Score = 87.9 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 43/279 (15%), Positives = 97/279 (34%), Gaps = 50/279 (17%) Query: 4 MKEDYSFFVPDKQKND---QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQ---AVRLID 57 +K P K +NK+ QL + D+ + + + A I Sbjct: 85 IKRSSPLVTPSIAKPATEVSEENKDFQLKLN----GAYRFDNFIEGPSNQFVKSAALGIA 140 Query: 58 SWPSWPSRVVILVGPSGSGKSCLAN--------------IWSDKSRSTRFSNIAKSLDSI 103 + P + + G G GK+ L + I + + +++ L Sbjct: 141 ARPGRSYNPLFIHGGVGLGKTHLLHAVGHYVREHHKNLRIHCITTEAF-INDLVHHLRVK 199 Query: 104 LID-------TRKPVLLEDI----DLLDFNDT------QLFHIINSIHQYDSSLLMTART 146 ID + +L++DI + +F + L H+ +++T+ Sbjct: 200 SIDKMKNFYRSLDLLLVDDIQFLQNRQNFEEEFCNTFETLIHL-------SKQIVVTSDK 252 Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206 P + + +R++ V + +PD + ++ + + I ++A YI + Sbjct: 253 PPGQLKLS-ERIIARMEWGLVAHVGVPDLETRVAILQHKAEQKGLNIPNEMAFYIADHVY 311 Query: 207 RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 ++ E ++K+ L +T + + LKE + Sbjct: 312 GNVRQLEGAINKLTAYCLLFNKPLTETTVRDTLKELFRA 350 >gi|47097243|ref|ZP_00234805.1| chromosomal replication initiator protein DnaA [Listeria monocytogenes str. 1/2a F6854] gi|47014398|gb|EAL05369.1| chromosomal replication initiator protein DnaA [Listeria monocytogenes str. 1/2a F6854] Length = 284 Score = 87.9 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 25/174 (14%), Positives = 59/174 (33%), Gaps = 26/174 (14%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW-----SD 86 D ++ S A + P++ + + G G GK+ L + Sbjct: 111 NPRYVFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAVGHYVQQH 170 Query: 87 KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 K + ++ + I + + +L++DI L + + FH Sbjct: 171 KDNAKVMYLSSEKFTNEFISSIRDNKTEEFRTKYRNVDVLLIDDIQFLAGKEGTQEEFFH 230 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 N+++ +++++ P L SR + + I+ PD + ++ Sbjct: 231 TFNTLYDEQKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAIL 284 >gi|260221776|emb|CBA30678.1| Chromosomal replication initiator protein dnaA [Curvibacter putative symbiont of Hydra magnipapillata] Length = 486 Score = 87.9 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 73/199 (36%), Gaps = 23/199 (11%) Query: 67 VILVGPSGSGKSCLAN-----------------IWSDKSRSTRFSNIAKSLDSILIDTR- 108 + + G G GK+ L + I +++ S + + Sbjct: 187 LFIYGGVGLGKTHLMHAVGNRLLVDKPGSKVLYIHAEQFVSDVVKAYQRKTFDEFKERYH 246 Query: 109 --KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 +L++D+ D + F+ ++ S ++MT+ T+P L SR Sbjct: 247 SLDLLLIDDVQFFANKDRTQEEFFNAFEALLAKKSHIVMTSDTYPKGLADIHERLVSRFD 306 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + V I P+ + +++ + +++A ++ + + ++ E + K+ + Sbjct: 307 SGLTVAIEPPELEMRVAILINKAHAEGSEMPEEVAFFVAKNVRSNVRELEGALRKILAYS 366 Query: 224 LSRGMGITRSLAAEVLKET 242 I+ LA E L++ Sbjct: 367 RFNQKEISIQLAREALRDL 385 >gi|94266099|ref|ZP_01289816.1| chromosomal replication initiator protein, DnaA [delta proteobacterium MLMS-1] gi|93453344|gb|EAT03778.1| chromosomal replication initiator protein, DnaA [delta proteobacterium MLMS-1] Length = 447 Score = 87.9 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 40/242 (16%), Positives = 84/242 (34%), Gaps = 35/242 (14%) Query: 36 LGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWS------- 85 + D+ +V + A ++ + V + +G GKS L + + Sbjct: 110 PRYTFDEFMVGDSNALAHSACEAIATGTTQAEPCVFINAGTGLGKSHLTHAVAHHLYNNA 169 Query: 86 ----------DKSRSTRFSNI----AKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFH 128 + + +I + +L+ED+ L +L Sbjct: 170 PGTRLCCLTSQQLTAELVHHIRNNSMEQFKEKFQRRCDVLLVEDVQTLSGRSKTQVELAE 229 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDL----CSRLKAATVVKISLPDDDFLEKVIVK 184 ++S+ +L T P +PDL SRL + V I+ PD +I + Sbjct: 230 AVDSLLDSGRRVLFTGSRSPRE----IPDLDEGVRSRLASGLVTTINPPDIKTRRLIIRR 285 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 ++ +D+++ AYI +++ + E + + A R + T + EV+ Sbjct: 286 KAVFHKLALDEEMVAYIAEKVRGDIRKVESAIVGLKAKANLRRIAPTTEMVREVVATVAG 345 Query: 245 CD 246 + Sbjct: 346 EE 347 >gi|262277742|ref|ZP_06055535.1| chromosomal replication initiator protein DnaA [alpha proteobacterium HIMB114] gi|262224845|gb|EEY75304.1| chromosomal replication initiator protein DnaA [alpha proteobacterium HIMB114] Length = 462 Score = 87.9 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 33/237 (13%), Positives = 82/237 (34%), Gaps = 29/237 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPS--WPSRVVILVGPSGSGKSCLANIWSDKSRSTR 92 ++ + + + + A + + G G GK+ + N ++ + Sbjct: 124 DPRLNFESFVTGESNQLAFSAAKRVTESLGHYNPLYIYGGVGLGKTHILNAIGNQLKQMD 183 Query: 93 FSNIAKSLDS------------------ILIDTRKPVLLEDIDLLDFND---TQLFHIIN 131 I S + + ++L+DI + + + F+ N Sbjct: 184 KKVIYLSAERFMYQFVKSIKNKDTHKFKEIFRNADVLILDDIQFISGKEVTQEEFFYTFN 243 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD--- 188 S+ + S ++++ P + SRL VV + PD +++ K Sbjct: 244 SLLENQSQVVISCDRSPNELDRIQDRIKSRLSGGLVVDVQPPDIGLRLEILKKRCLAEKN 303 Query: 189 ---RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +I I+ ++ ++I + S+ +++++ A + T A +LK+ Sbjct: 304 HFGNEILINDEILSFISNEFKSSVRDMLGVLNRVIASARIQNKTPTLQDAKLILKDL 360 >gi|296110744|ref|YP_003621125.1| chromosomal replication initiation protein DnaA [Leuconostoc kimchii IMSNU 11154] gi|295832275|gb|ADG40156.1| chromosomal replication initiation protein DnaA [Leuconostoc kimchii IMSNU 11154] Length = 448 Score = 87.9 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 47/271 (17%), Positives = 93/271 (34%), Gaps = 42/271 (15%) Query: 10 FFVPDKQKNDQ-PKNKEEQ---LFF--SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP 63 F P+ + D PK+ Q L F + D +V + E A + + P Sbjct: 79 FIKPELRVADALPKSTAIQTETLTFTRESDLNEAFTFDKFVVGTGNENAYAIARAVAEDP 138 Query: 64 SRVV---ILVGPSGSGKSCLANIWSDKSRSTR-------------FSNIAKSLDSILIDT 107 +V ++ G G GK+ L + T ++ +SL + T Sbjct: 139 GKVYNPYLIYGGVGLGKTHLMQAIGNAYSKTTPSARIKYATAEDFLNDFTESLRAGEGAT 198 Query: 108 RK---------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 +L++DI + + F+ N + + ++MT+ P Sbjct: 199 AAFKKEYRTVDLLLIDDIQFWSGKEKVQEEFFNTFNVLTKTGKQIIMTSDKLPTEIV--- 255 Query: 156 PDLCSRLK----AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211 DL SRL A + I PD ++ + + I + I +++ ++ Sbjct: 256 -DLQSRLTSRFEAGISMDIQKPDLPTRVAILKNLAETDNLDIPNDVLELIADKIDSNIRT 314 Query: 212 AEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 E + + + R T+ A ++L + Sbjct: 315 LEGTFHRFEAMLRYRNKPATKETAQKILGDL 345 >gi|307707899|ref|ZP_07644374.1| chromosomal replication initiator protein DnaA [Streptococcus mitis NCTC 12261] gi|307615964|gb|EFN95162.1| chromosomal replication initiator protein DnaA [Streptococcus mitis NCTC 12261] Length = 453 Score = 87.5 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 33/242 (13%), Positives = 76/242 (31%), Gaps = 28/242 (11%) Query: 31 SFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87 + D+ + AV + + + + G G GK+ L N ++ Sbjct: 112 DTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTYNPLFIYGGPGLGKTHLLNAIGNE 171 Query: 88 SRSTRFSNIAKSLDSILI--------------------DTRKPVLLEDIDLLDF----ND 123 K + + + +L++DI L Sbjct: 172 ILKNIPDARVKYIPAESFINDFLEHLRLGEMDKFKKTYRSLDLLLIDDIQSLSGKKVATQ 231 Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 + F+ N +H +++T+ P L +R I+ PD + ++ Sbjct: 232 EEFFNTFNVLHNNQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQNITPPDFETRIAILQ 291 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVLKET 242 + Y+ + + ++ E ++ + +A + IT +AAE ++ Sbjct: 292 SKTENLDYHFQSDTLEYLAGQFDSNVRELEGAINDITLIARVKKIKDITIDIAAEAIRAR 351 Query: 243 QQ 244 +Q Sbjct: 352 KQ 353 >gi|118587493|ref|ZP_01544918.1| initiation of chromosome replication [Oenococcus oeni ATCC BAA-1163] gi|118432143|gb|EAV38884.1| initiation of chromosome replication [Oenococcus oeni ATCC BAA-1163] Length = 466 Score = 87.5 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 44/239 (18%), Positives = 83/239 (34%), Gaps = 33/239 (13%) Query: 31 SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDK 87 + + D ++ A E A + P R +++ G SG GK+ L ++ Sbjct: 127 DYQLNQNFTFDTWVIGDANELATSAAMAVSEQPGRQYNPLLIYGSSGLGKTHLMEAIGNR 186 Query: 88 SRSTRFSNIAKSLDS--------------------ILIDTRKPVLLEDIDLLDFND---T 124 + + I + + + + +L++DI +L D Sbjct: 187 LKELQPDAIVRYITTDDFMNDWVNAISKKTTTDFTSTYENVDLLLVDDIQMLQGKDRFQE 246 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + F+I N I + ++MT+ P L SR I PD ++ Sbjct: 247 EFFNIFNKITKSQKQIVMTSDVLPKDIPGLNARLVSRFMQGVAYDIQKPDFPTRLAILKN 306 Query: 185 MFADRQIFIDKKLAAYIVQRME---RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + I ID + I ++++ R L A + M G I S A ++L+ Sbjct: 307 KSEEVGISIDNQTLTLIAEQIDTNVRELEGAFNTLTLMARA----GRPINVSNAQKILE 361 >gi|116490127|ref|YP_809648.1| chromosomal replication initiator protein DnaA [Oenococcus oeni PSU-1] gi|290889521|ref|ZP_06552611.1| hypothetical protein AWRIB429_0001 [Oenococcus oeni AWRIB429] gi|122277682|sp|Q04HR6|DNAA_OENOB RecName: Full=Chromosomal replication initiator protein DnaA gi|116090852|gb|ABJ56006.1| DNA replication ATPase initiation [Oenococcus oeni PSU-1] gi|290480719|gb|EFD89353.1| hypothetical protein AWRIB429_0001 [Oenococcus oeni AWRIB429] Length = 450 Score = 87.5 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 44/239 (18%), Positives = 83/239 (34%), Gaps = 33/239 (13%) Query: 31 SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDK 87 + + D ++ A E A + P R +++ G SG GK+ L ++ Sbjct: 111 DYQLNQNFTFDTWVIGDANELATSAAMAVSEQPGRQYNPLLIYGSSGLGKTHLMEAIGNR 170 Query: 88 SRSTRFSNIAKSLDS--------------------ILIDTRKPVLLEDIDLLDFND---T 124 + + I + + + + +L++DI +L D Sbjct: 171 LKELQPDAIVRYITTDDFMNDWVNAISKKTTADFTSTYENVDLLLVDDIQMLQGKDRFQE 230 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + F+I N I + ++MT+ P L SR I PD ++ Sbjct: 231 EFFNIFNKITKSQKQIVMTSDVLPKDIPGLNARLVSRFMQGVAYDIQKPDFPTRLAILKN 290 Query: 185 MFADRQIFIDKKLAAYIVQRME---RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + I ID + I ++++ R L A + M G I S A ++L+ Sbjct: 291 KSEEVGISIDNQTLTLIAEQIDTNVRELEGAFNTLTLMARA----GRPINVSNAQKILE 345 >gi|289811521|ref|ZP_06542150.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 226 Score = 87.5 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 53/120 (44%) Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 + FH N++ + + +++T+ +P L SR V I P+ + ++ Sbjct: 6 QEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAIL 65 Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +K + I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 66 MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 125 >gi|289166910|ref|YP_003445177.1| DNA biosynthesis, initiation, binding protein [Streptococcus mitis B6] gi|288906475|emb|CBJ21305.1| DNA biosynthesis, initiation, binding protein [Streptococcus mitis B6] Length = 453 Score = 87.5 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 33/242 (13%), Positives = 75/242 (30%), Gaps = 28/242 (11%) Query: 31 SFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87 + D+ + AV + + + + G G GK+ L N ++ Sbjct: 112 DTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTYNPLFIYGGPGLGKTHLLNAIGNE 171 Query: 88 SRSTRFSNIAKSLDSILI--------------------DTRKPVLLEDIDLLDF----ND 123 K + + + +L++DI L Sbjct: 172 ILKNIPDARVKYIPAESFINDFLEHLRLGEMDKFKKTYRSLDLLLIDDIQSLSGKKVATQ 231 Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 + F+ N +H +++T+ P L +R I+ PD + ++ Sbjct: 232 EEFFNTFNVLHNNQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQNITPPDFETRIAILQ 291 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVLKET 242 Y+ + + ++ E ++ + +A + IT +AAE ++ Sbjct: 292 SKTEHLDYHFQSDTLEYLAGQFDSNVRELEGAINDITLIARVKKIKDITIDIAAEAIRAR 351 Query: 243 QQ 244 +Q Sbjct: 352 KQ 353 >gi|307711216|ref|ZP_07647638.1| chromosomal replication initiator protein DnaA [Streptococcus mitis SK321] gi|307617178|gb|EFN96356.1| chromosomal replication initiator protein DnaA [Streptococcus mitis SK321] Length = 453 Score = 87.5 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 33/242 (13%), Positives = 75/242 (30%), Gaps = 28/242 (11%) Query: 31 SFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87 + D+ + AV + + + + G G GK+ L N ++ Sbjct: 112 DTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTYNPLFIYGGPGLGKTHLLNAIGNE 171 Query: 88 SRSTRFSNIAKSLDSILI--------------------DTRKPVLLEDIDLLDF----ND 123 K + + + +L++DI L Sbjct: 172 ILKNIPDARVKYIPAESFINDFLEHLRLGEMEKFKKTYRSLDLLLIDDIQSLSGKKVATQ 231 Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 + F+ N +H +++T+ P L +R I+ PD + ++ Sbjct: 232 EEFFNTFNVLHSNQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQNITPPDFETRIAILQ 291 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVLKET 242 Y+ + + ++ E ++ + +A + IT +AAE ++ Sbjct: 292 SKTEHLDYHFQSDTLEYLAGQFDSNVRELEGAINDITLIARVKKIKDITIDIAAEAIRAR 351 Query: 243 QQ 244 +Q Sbjct: 352 KQ 353 >gi|296120275|ref|YP_003628053.1| chromosomal replication initiator protein DnaA [Planctomyces limnophilus DSM 3776] gi|296012615|gb|ADG65854.1| chromosomal replication initiator protein DnaA [Planctomyces limnophilus DSM 3776] Length = 850 Score = 87.5 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 41/231 (17%), Positives = 92/231 (39%), Gaps = 30/231 (12%) Query: 42 DLLVHSAIEQAVRL----IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR-------- 89 DL+V + E A+ D P+ P + L G G GK+ L S + R Sbjct: 513 DLVVGTGNELALAAARKVCDEVPA-PFNPLYLFGNVGIGKTHLLEGISRQLRRQHPGLNV 571 Query: 90 ----STRFSN-IAKSLDSILIDTRK-------PVLLEDIDLLDFND---TQLFHIINSIH 134 + +F+N ++L + + + +L++D+D LD + H + Sbjct: 572 LMMTAEQFANCFTQALRDKTLPSFRQKFRNVDALLIDDVDFLDNTRVIREEFLHTFTELA 631 Query: 135 QYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193 + ++++TA P L D L +R + + ++ PD E+++ A I Sbjct: 632 ERGRAIVLTADRHPKLLS-KLGDELVTRFMSGLICRVEAPDQATRERIVQMKAARMGTDI 690 Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 ++ ++ Q+ ++ E ++ + + + A ++L + ++ Sbjct: 691 SEEALMWVAQKFRNNVRELEGALNCLHTWYTMSERRVGLATARQILADLER 741 >gi|328951747|ref|YP_004369081.1| Chromosomal replication initiator protein dnaA [Desulfobacca acetoxidans DSM 11109] gi|328452071|gb|AEB07900.1| Chromosomal replication initiator protein dnaA [Desulfobacca acetoxidans DSM 11109] Length = 461 Score = 87.5 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 35/236 (14%), Positives = 81/236 (34%), Gaps = 27/236 (11%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWP---SRVVILVGPSGSGKSCLANI---------- 83 + + +V ++ A + + R + L G GKS L+ Sbjct: 112 AFTFEQFVVGASNRFAFQASRALAGNDAFYGRTLFLTAQPGLGKSHLSQAVGNYIQTNYR 171 Query: 84 -----------WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLFHI 129 ++++ + +LLE + L + +L + Sbjct: 172 HHQVFYLTAEDFANEMVAALRQGAMAQFKDKFRRQCDTLLLEGVHFLSGKEKIQAELCYT 231 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 ++ + + L+ T+ P+ +L SR + I PD ++ + DR Sbjct: 232 LDCLADLNKKLVFTSPYLPMEIPHLKQELLSRFTGGVITPIDPPDFSTRVSILTRKAQDR 291 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 Q+ + +++ ++ + + + +D + A + I LA EVL++ Q Sbjct: 292 QVQVPREVKEHLATYLTQDVRQMVSALDNLLLKAATLKTDINLDLANEVLRDFQAA 347 >gi|332198657|gb|EGJ12740.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae GA41317] Length = 380 Score = 87.5 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 30/229 (13%), Positives = 72/229 (31%), Gaps = 27/229 (11%) Query: 31 SFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87 + D+ + AV + + + + G G GK+ L N ++ Sbjct: 112 DTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTYNPLFIYGGPGLGKTHLLNAIGNE 171 Query: 88 -----SRSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLLDF----ND 123 + A+S + +D + +L++DI L Sbjct: 172 ILKNIPNARVKYIPAESFINDFLDHLRLGEMEKFKKTYRSLDLLLIDDIQSLSGKKVATQ 231 Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 + F+ N++H +++T+ P L +R I+ PD + ++ Sbjct: 232 EEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQTITPPDFETRIAILQ 291 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232 Y+ + + ++ E ++ + +A + I+ Sbjct: 292 SKTEHLGYNFQSDTLEYLAGQFDSNVRDLEGAINDITLIARVKKSRISL 340 >gi|218510164|ref|ZP_03508042.1| hypothetical protein RetlB5_23469 [Rhizobium etli Brasil 5] Length = 69 Score = 87.1 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 41/66 (62%), Positives = 51/66 (77%) Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 +IVK+FADRQ++ID KL YIV RMERSL A+ +V+++D LALSRG ITRSLAAEVL Sbjct: 1 MIVKLFADRQLYIDDKLVLYIVNRMERSLNAAQTIVERLDRLALSRGTKITRSLAAEVLN 60 Query: 241 ETQQCD 246 E + Sbjct: 61 ELGNSE 66 >gi|300172303|ref|YP_003771468.1| chromosomal replication initiator protein DnaA [Leuconostoc gasicomitatum LMG 18811] gi|299886681|emb|CBL90649.1| chromosomal replication initiator protein DnaA [Leuconostoc gasicomitatum LMG 18811] Length = 448 Score = 87.1 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 37/240 (15%), Positives = 81/240 (33%), Gaps = 36/240 (15%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVV---ILVGPSGSGKSCLANIWSDKSR-- 89 + D +V + E A + + P RV ++ G G GK+ L + Sbjct: 110 NENFTFDKFVVGTGNENAYAIARAVAEDPGRVYNPYLIYGGVGLGKTHLMQAIGNAYSKT 169 Query: 90 ---STRFSNIAKSLDSILIDTRKP-----------------VLLEDIDLLDFND---TQL 126 + A+ + ++ + +L++DI + + Sbjct: 170 TPSARIKYATAEDFLNDFTESLRAGEGATAVFKKEYRTVDLLLIDDIQFWSGKEKVQEEF 229 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK----AATVVKISLPDDDFLEKVI 182 F+ N + + ++MT+ P DL SRL A + I PD ++ Sbjct: 230 FNTFNVLTKTGKQIIMTSDKLPTEIV----DLQSRLTSRFEAGISMDIQKPDLPTRVAIL 285 Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + I + I +++ ++ E + + + R T+ A ++L + Sbjct: 286 KNLAETDNLEIPNDVLELIADKIDSNIRTLEGTFHRFEAMLRYRNKPATKETAQKILGDL 345 >gi|296448171|ref|ZP_06890069.1| chromosomal replication initiator protein DnaA [Methylosinus trichosporium OB3b] gi|296254302|gb|EFH01431.1| chromosomal replication initiator protein DnaA [Methylosinus trichosporium OB3b] Length = 497 Score = 87.1 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 35/243 (14%), Positives = 77/243 (31%), Gaps = 31/243 (12%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS------RVVILVGPSGSGKSCLANIWSD 86 P +S LV + + A + + G GK+ L + Sbjct: 155 PLDRRLSFSTFLVGPSNQLAYAAACRVADARAGDHPLFNPLYTHAAVGLGKTHLLQAVAR 214 Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVL----------LEDIDLLDFNDTQLF--------- 127 + R I + + + + L +ID+L +D Q Sbjct: 215 AANDNRRRVIYLTAEKFMSGFVSALTAQTSMAFKEKLRNIDVLIIDDVQFLQGKSIQQEF 274 Query: 128 -HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 H +N++ +++ A P + SR K V I D++ K++ Sbjct: 275 CHTLNALIDDGKQVVVAADRPPSDLETLDERVLSRFKGGLCVDIGPLDEELRVKILEARI 334 Query: 187 ADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 A Q + + +Y+ + + + E V+++ + G + A +++ Sbjct: 335 AAAQEAQPSFHVPPAVVSYVAKTIVTNGRDLEGAVNRLLAHSTLNGAPLCVETAENAIRD 394 Query: 242 TQQ 244 + Sbjct: 395 LVR 397 >gi|328477669|gb|EGF47698.1| chromosomal replication initiation protein [Lactobacillus rhamnosus MTCC 5462] Length = 299 Score = 87.1 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 36/204 (17%), Positives = 72/204 (35%), Gaps = 25/204 (12%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTR------------------ 108 + + G G GK+ L + + K + S Sbjct: 19 LFIYGGVGLGKTHLMQAIGNLVLENNPAANIKYVTSENFANDFINSIQTKQQEQFRQEYR 78 Query: 109 --KPVLLEDI----DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 +L++DI D + FH N++++ +++T+ P L SR Sbjct: 79 NVDLLLVDDIQFFGDKEATQEE-FFHTFNTLYENMKQIVLTSDRLPNEIPKLQERLVSRF 137 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 V ++ PD + ++ + I +YI ++E ++ E + ++ Sbjct: 138 NKGLSVDVTPPDLETRIAILRNKANAEDLSIPDDTLSYIAGQIESNVRDLEGALVRVQAF 197 Query: 223 ALSRGMGITRSLAAEVLKETQQCD 246 + + IT SLAA+ LK + D Sbjct: 198 STMKNEDITTSLAADALKALKLDD 221 >gi|94984110|ref|YP_603474.1| chromosomal replication initiator protein DnaA [Deinococcus geothermalis DSM 11300] gi|94554391|gb|ABF44305.1| chromosomal replication initiator protein DnaA [Deinococcus geothermalis DSM 11300] Length = 470 Score = 87.1 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 35/260 (13%), Positives = 92/260 (35%), Gaps = 32/260 (12%) Query: 12 VPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VI 68 +P + + P + L + ++ +V A + P + + Sbjct: 112 LPGQPPSQVPSESRQVL------NPKYTFENFVVGPNNNLAHAAALAVAESPGKAYNPLF 165 Query: 69 LVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDTRKPV 111 + G G GK+ L + ++ + + I + + + V Sbjct: 166 IYGDVGLGKTHLMHAVGHYIMERFPDKRIEYVSTESFTNELINAIRDDKTTQFRNRYRSV 225 Query: 112 ---LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 L++DI L + + FH N++++ +++++ P L SR + Sbjct: 226 DLLLVDDIQFLAGKERTQEEFFHTFNALYENHKQIILSSDRPPKDIQTLEGRLRSRFEWG 285 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 + I P+ + ++ +I I +++ I +++ ++ E + ++ A Sbjct: 286 LITDIQTPEFETRVAILKMNAEHNRIDIPQEVLELIARQVTSNIRELEGALMRVVAFASL 345 Query: 226 RGMGITRSLAAEVLKETQQC 245 + +R++AA+ L Sbjct: 346 NNVPFSRAVAAKALSNVFAP 365 >gi|160946604|ref|ZP_02093807.1| hypothetical protein PEPMIC_00562 [Parvimonas micra ATCC 33270] gi|158446988|gb|EDP23983.1| hypothetical protein PEPMIC_00562 [Parvimonas micra ATCC 33270] Length = 471 Score = 87.1 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 31/208 (14%), Positives = 72/208 (34%), Gaps = 26/208 (12%) Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDK-SRSTRFSNIAKSLDSILIDTRKPV------- 111 P+ + + G SG GK+ L + ++ + S + ID + Sbjct: 162 PAGTYNPLFIYGNSGLGKTHLMKAIGHEIHKNFDCKVLYLSSEKFTIDLIDSIRDKNQNS 221 Query: 112 --------------LLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 L++DI + + FH N ++ + +++++ P Sbjct: 222 ESEFRKKYRNVDVLLIDDIQFIAGKTATQEEFFHTFNELYSRNKQIIISSDRPPKEIKNL 281 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE- 213 L SR V I PD + ++ I + ++ +I ++ ++ E Sbjct: 282 EDRLKSRFNMGLTVDIQPPDFETRMAILQDKVKYEPIALSNEVLEFIAMNIKTNIRELEG 341 Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKE 241 L++ + + L + +T +L + Sbjct: 342 ALINVLAHYKLKQDAPMTVDYVKRILAQ 369 >gi|315271245|gb|ACO44797.2| putative chromosomal replication initiator protein [Deinococcus deserti VCD115] Length = 456 Score = 87.1 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 31/237 (13%), Positives = 90/237 (37%), Gaps = 26/237 (10%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI----WSDK 87 + ++ +V A + P + + + G G GK+ L + +++ Sbjct: 115 NPKYTFENFVVGPNNNLAHAAALAVAESPGKAYNPLFIYGDVGLGKTHLMHAVGHYIAER 174 Query: 88 SRSTRFSNIA-KSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 R ++ ++ + LI+ + +L++DI L + + FH Sbjct: 175 FPEKRIEYVSTETFTNELINAIREDKTTQFRNRYRSVDLLLVDDIQFLAGKERTQEEFFH 234 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++++ +++++ P L SR + + I P+ + ++ Sbjct: 235 TFNALYENHKQIILSSDRPPKDIQTLEGRLRSRFEWGLITDIQSPEFETRVAILKMNAEH 294 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 +I I +++ I +++ ++ E + ++ + + +R++A++ L Sbjct: 295 NRIDIPQEVLELIARQVTTNIRELEGALMRVVAFSSLNNVPFSRAVASKALSNVFAP 351 >gi|78485392|ref|YP_391317.1| chromosomal replication initiator protein DnaA [Thiomicrospira crunogena XCL-2] gi|78363678|gb|ABB41643.1| regulatory inactivation of DnaA Hda protein [Thiomicrospira crunogena XCL-2] Length = 237 Score = 87.1 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 31/237 (13%), Positives = 74/237 (31%), Gaps = 27/237 (11%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWP-----SWPSRVVILVGPSGSGKSCLA 81 QL + D + E V ++ + S G SGSGK+ + Sbjct: 4 QLPLKIGLREEVCFDTFIAEE--EGVVLALNRFQQTLLKSNNGDAFYFQGESGSGKTHIL 61 Query: 82 NIWSD-----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFN---DTQLFH 128 KS S SL I ++ V L+D++ + + L Sbjct: 62 QAACRFMTEKKSSSVYLPLGDDSLPLIPDVLNGLEQTLLVCLDDVENIIGQPEWEHALAS 121 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL----PDDDFLEKVIVK 184 ++ + ++++ SW + +L + + + + PD + + Sbjct: 122 LLMRSKELGHKVVLSGTNPAGSWSIATTELTHAMMSVLPITLKPLTNKPDIVL---AMQR 178 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + + Y++++ L ++ ++ +T ++L + Sbjct: 179 HALKLGFELPLDVGNYLIKQFSTDLQELLSVLRILEQATFVEKRRMTLPFVKQILTK 235 >gi|226354811|ref|YP_002784551.1| chromosomal replication initiation protein [Deinococcus deserti VCD115] gi|259645247|sp|C1CXJ1|DNAA_DEIDV RecName: Full=Chromosomal replication initiator protein DnaA Length = 459 Score = 87.1 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 31/237 (13%), Positives = 90/237 (37%), Gaps = 26/237 (10%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI----WSDK 87 + ++ +V A + P + + + G G GK+ L + +++ Sbjct: 118 NPKYTFENFVVGPNNNLAHAAALAVAESPGKAYNPLFIYGDVGLGKTHLMHAVGHYIAER 177 Query: 88 SRSTRFSNIA-KSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 R ++ ++ + LI+ + +L++DI L + + FH Sbjct: 178 FPEKRIEYVSTETFTNELINAIREDKTTQFRNRYRSVDLLLVDDIQFLAGKERTQEEFFH 237 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++++ +++++ P L SR + + I P+ + ++ Sbjct: 238 TFNALYENHKQIILSSDRPPKDIQTLEGRLRSRFEWGLITDIQSPEFETRVAILKMNAEH 297 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 +I I +++ I +++ ++ E + ++ + + +R++A++ L Sbjct: 298 NRIDIPQEVLELIARQVTTNIRELEGALMRVVAFSSLNNVPFSRAVASKALSNVFAP 354 >gi|182680573|ref|YP_001828733.1| chromosomal replication initiation protein [Xylella fastidiosa M23] gi|182630683|gb|ACB91459.1| chromosomal replication initiator protein DnaA [Xylella fastidiosa M23] Length = 443 Score = 87.1 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 43/246 (17%), Positives = 85/246 (34%), Gaps = 31/246 (12%) Query: 29 FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGP------SGSGKSCLAN 82 F+ + D+ + + + A P P +G GK+ L Sbjct: 102 PFNGNLDTHYNFDNFVEGRSNQLARAAAWQAAQKPGDRT--HNPLLLYGGTGLGKTHLMF 159 Query: 83 IWSDKSRSTR-------------FSNIAKSLDSILID-------TRKPVLLEDIDLLDFN 122 + R FS + ++L +D +L++DI Sbjct: 160 AAGNVMRQVNPTYKVMYLRSEQFFSAMIRALQDKSMDQFKRQFHQIDALLIDDIQFFAGK 219 Query: 123 D---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179 D + FH N++ +++T +P P L SRL V I PD + Sbjct: 220 DRTQEEFFHTFNALFDGKQQIILTCDRYPREVNGLEPRLKSRLAWGLSVAIDPPDFETRA 279 Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 +++ +R I ++A I ++M ++ E ++ + A G +T + E L Sbjct: 280 AIVLAKARERGATIPDEVAFLIAKKMHSNVRDLEGALNTLVARANFTGRAVTIEFSQETL 339 Query: 240 KETQQC 245 ++ + Sbjct: 340 RDLLRA 345 >gi|188579288|ref|YP_001922733.1| chromosomal replication initiation protein [Methylobacterium populi BJ001] gi|179342786|gb|ACB78198.1| chromosomal replication initiator protein DnaA [Methylobacterium populi BJ001] Length = 501 Score = 87.1 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 34/240 (14%), Positives = 79/240 (32%), Gaps = 30/240 (12%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWP-----SWPSRVVILVGPSGSGKSCLANIWSDK 87 P ++ +V + A + + + G GK+ L + Sbjct: 160 PLDARLTFASFVVGRSNALAHAAAERIARSDGDGALYNPLYVHAGVGLGKTHLLHAAGHA 219 Query: 88 SRSTRFSNIAKSLDSIL------------------IDTRKPVLLEDIDLLDFN--DTQLF 127 +R I + D + + ++L+D+ + T+ Sbjct: 220 AREAGRRVIYLTADRFMYGFVNALKTQSALAFKERLRAIDLLILDDVQFIQGKSIQTEFG 279 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF- 186 H +N++ +++ + P + SRL VV+I D+ ++ Sbjct: 280 HTLNALIDSGRQVVVASDRPPTELEALDERVRSRLAGGLVVEIGGLDEGLRASILSARLD 339 Query: 187 ADRQ----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 A RQ + ++AY+ + + + E V+++ A G +T A +++ Sbjct: 340 AVRQSHPNFEVSPAVSAYVARAITANGRDLEGAVNRLLAHATLTGAPVTVETAETAIRDL 399 >gi|15835165|ref|NP_296924.1| chromosomal replication initiation protein [Chlamydia muridarum Nigg] gi|270285337|ref|ZP_06194731.1| chromosomal replication initiation protein [Chlamydia muridarum Nigg] gi|270289353|ref|ZP_06195655.1| chromosomal replication initiation protein [Chlamydia muridarum Weiss] gi|301336734|ref|ZP_07224936.1| chromosomal replication initiation protein [Chlamydia muridarum MopnTet14] gi|14194689|sp|Q9PKB9|DNAA2_CHLMU RecName: Full=Chromosomal replication initiator protein DnaA 2 gi|7190587|gb|AAF39386.1| chromosomal replication initiator protein DnaA [Chlamydia muridarum Nigg] Length = 455 Score = 87.1 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 40/256 (15%), Positives = 92/256 (35%), Gaps = 47/256 (18%) Query: 21 PKNKEEQLFFSFPRCLGISRDDLLVHSAIEQ---AVRLIDSWPSWPSRVVILVGPSGSGK 77 +NK+ QL + D+ + + + A I + P + + G G GK Sbjct: 105 EENKDFQLKLN----GAYRFDNFIEGPSNQFVKSAALGIAARPGRSYNPLFIHGGVGLGK 160 Query: 78 SCLAN--------------IWSDKSRSTRFSNIAKSLDSILID-------TRKPVLLEDI 116 + L + I + + +++ L ID + +L++DI Sbjct: 161 THLLHAVGHYVREHHKNLRIHCITTEAF-INDLVHHLRVKSIDKMKNFYRSLDLLLVDDI 219 Query: 117 ----DLLDFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 + +F + L H+ +++T+ P + + +R++ Sbjct: 220 QFLQNRQNFEEEFCNTFETLIHL-------SKQIVVTSDKPPGQLKLS-ERIIARMEWGL 271 Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 V + +PD + ++ + + I ++A YI + ++ E ++K+ L Sbjct: 272 VAHVGVPDLETRVAILQHKAEQKGLNIPNEIAFYIADHVYGNVRQLEGAINKLTAYCLLF 331 Query: 227 GMGITRSLAAEVLKET 242 +T + + LKE Sbjct: 332 NKPLTETTVRDTLKEL 347 >gi|85713964|ref|ZP_01044953.1| chromosomal replication initiator protein, DnaA [Nitrobacter sp. Nb-311A] gi|85699090|gb|EAQ36958.1| chromosomal replication initiator protein, DnaA [Nitrobacter sp. Nb-311A] Length = 509 Score = 87.1 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 25/245 (10%), Positives = 77/245 (31%), Gaps = 32/245 (13%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWP------SRVVILVGPSGSGKSCLANI--W 84 P ++ + + A + + G GK+ L W Sbjct: 166 PLDPRLTFQSFVTGRSNALAHAAARQVAEGRRGDSVMFNPLYIHAGVGLGKTHLLQAVTW 225 Query: 85 SDKSRSTR-------------FSNIAKSLDSIL----IDTRKPVLLEDIDLLDF--NDTQ 125 + + + R F K+ ++ + ++++D+ L + Sbjct: 226 AGNAGTERRVLYLTAEKFMYGFVAALKTQTALAFKEALRGIDVLVIDDLQFLQGKSTQAE 285 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK- 184 H +N++ +++ A P + SRL VV++ ++ ++ Sbjct: 286 FCHTLNALIDAGRQVVIAADRPPSDLESLDDRVRSRLAGGLVVEMGSLGEELRLGILRSR 345 Query: 185 ----MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + +++ Y+ + + + E ++++ + +T +A ++ Sbjct: 346 VEAARAHHASFDVPEQVLDYLAKTITHNGRDLEGAINRLLAHSKLNAQPVTLEMAEREVR 405 Query: 241 ETQQC 245 + + Sbjct: 406 DLVRP 410 >gi|323342257|ref|ZP_08082489.1| replication initiation protein DnaA [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463369|gb|EFY08563.1| replication initiation protein DnaA [Erysipelothrix rhusiopathiae ATCC 19414] Length = 471 Score = 87.1 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 30/214 (14%), Positives = 71/214 (33%), Gaps = 29/214 (13%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSD----- 86 + D+ +V + +++ P + + + G SG GK+ L N + Sbjct: 132 APNQTFDNFVVGPSNKESHSAALGCAYRPGQFYTPLFIYGNSGLGKTHLLNAIGNYIKKL 191 Query: 87 ---------------KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ---LFH 128 + + N + +L++DI L + FH Sbjct: 192 NPDARVLYTSSSDFVRQVANSIQNRTIEDFKEQMYNLDVLLIDDIQFLAGKEKSHEIFFH 251 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 I N + +++T+ P L SR + V + P+ + ++ Sbjct: 252 IFNELIYNKKQIVITSDRLPTEIKGLEDRLISRFSSGLSVGVDSPEFETSLAILELKIKH 311 Query: 189 RQIFI---DKKLAAYIVQRMERSLVFAEKLVDKM 219 + + D+ + +YI + + E ++++ Sbjct: 312 KSVDPGLFDEDVLSYIASNFSKDVRMLEGALNRL 345 >gi|28197946|ref|NP_778260.1| chromosomal replication initiation protein [Xylella fastidiosa Temecula1] gi|32129493|sp|Q87FC6|DNAA_XYLFT RecName: Full=Chromosomal replication initiator protein DnaA gi|28056006|gb|AAO27909.1| chromosomal replication initiator [Xylella fastidiosa Temecula1] gi|307579027|gb|ADN62996.1| chromosomal replication initiation protein [Xylella fastidiosa subsp. fastidiosa GB514] Length = 439 Score = 87.1 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 43/246 (17%), Positives = 85/246 (34%), Gaps = 31/246 (12%) Query: 29 FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGP------SGSGKSCLAN 82 F+ + D+ + + + A P P +G GK+ L Sbjct: 98 PFNGNLDTHYNFDNFVEGRSNQLARAAAWQAAQKPGDRT--HNPLLLYGGTGLGKTHLMF 155 Query: 83 IWSDKSRSTR-------------FSNIAKSLDSILID-------TRKPVLLEDIDLLDFN 122 + R FS + ++L +D +L++DI Sbjct: 156 AAGNVMRQVNPTYKVMYLRSEQFFSAMIRALQDKSMDQFKRQFHQIDALLIDDIQFFAGK 215 Query: 123 D---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179 D + FH N++ +++T +P P L SRL V I PD + Sbjct: 216 DRTQEEFFHTFNALFDGKQQIILTCDRYPREVNGLEPRLKSRLAWGLSVAIDPPDFETRA 275 Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 +++ +R I ++A I ++M ++ E ++ + A G +T + E L Sbjct: 276 AIVLAKARERGATIPDEVAFLIAKKMHSNVRDLEGALNTLVARANFTGRAVTIEFSQETL 335 Query: 240 KETQQC 245 ++ + Sbjct: 336 RDLLRA 341 >gi|33240018|ref|NP_874960.1| chromosomal replication initiation protein [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|37154736|sp|Q51896|DNAA_PROMA RecName: Full=Chromosomal replication initiator protein DnaA gi|33237544|gb|AAP99612.1| ATPase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 461 Score = 86.7 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 37/243 (15%), Positives = 79/243 (32%), Gaps = 29/243 (11%) Query: 28 LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW 84 L +R +V A + P R + + G G GK+ L Sbjct: 119 LPL-LNLRYVFNR--FVVGPNSRMAHAAAMAVAESPGREFNPLFICGGVGLGKTHLMQAI 175 Query: 85 S------DKSRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDFND- 123 D + + + +++ +L++DI ++ + Sbjct: 176 GHYRLEIDPGAKVSYVSTETFTNDLILAIRQDRMQAFRDRYRAADLILVDDIQFIEGKEY 235 Query: 124 --TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 + FH N++H S +++ + P L SR + + PD + + Sbjct: 236 TQEEFFHTFNALHDAGSQIVLASDRPPSQIPRLQERLMSRFSMGLIADVQAPDLETRMAI 295 Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + K ++ + + L +I R ++ E + + A G+ +T A +L Sbjct: 296 LQKKAEQERVGLPRDLIQFIAGRFTSNIRELEGALTRAIAFASITGLPMTVDSIAPMLDP 355 Query: 242 TQQ 244 Q Sbjct: 356 NGQ 358 >gi|71901968|ref|ZP_00684019.1| chromosomal replication initiator protein, DnaA [Xylella fastidiosa Ann-1] gi|71728273|gb|EAO30453.1| chromosomal replication initiator protein, DnaA [Xylella fastidiosa Ann-1] Length = 443 Score = 86.7 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 43/246 (17%), Positives = 85/246 (34%), Gaps = 31/246 (12%) Query: 29 FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGP------SGSGKSCLAN 82 F+ + D+ + + + A P P +G GK+ L Sbjct: 102 PFNGNLDTHYNFDNFVEGRSNQLARAAAWQAAQKPGDRT--HNPLLLYGGTGLGKTHLMF 159 Query: 83 IWSDKSRSTR-------------FSNIAKSLDSILID-------TRKPVLLEDIDLLDFN 122 + R FS + ++L +D +L++DI Sbjct: 160 AAGNVMRQVNPTYKVMYLRSEQFFSAMIRALQDKSMDQFKRQFHQIDALLIDDIQFFAGK 219 Query: 123 D---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179 D + FH N++ +++T +P P L SRL V I PD + Sbjct: 220 DRTQEEFFHTFNALFDGKQQIILTCDRYPREVNGLEPRLKSRLAWGLSVAIDPPDFETRA 279 Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 +++ +R I ++A I ++M ++ E ++ + A G +T + E L Sbjct: 280 AIVLAKARERGATIPDEVAFLIAKKMHSNVRDLEGALNTLVARANFTGRAVTIEFSQETL 339 Query: 240 KETQQC 245 ++ + Sbjct: 340 RDLLRA 345 >gi|319790695|ref|YP_004152335.1| chromosomal replication initiator protein dnaa [Variovorax paradoxus EPS] gi|315593158|gb|ADU34224.1| chromosomal replication initiator protein DnaA [Variovorax paradoxus EPS] Length = 459 Score = 86.7 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 74/199 (37%), Gaps = 23/199 (11%) Query: 67 VILVGPSGSGKSCLAN-----------------IWSDKSRSTRFSNIAKSLDSILIDTR- 108 + + G G GK+ L + I +++ S + + Sbjct: 160 LFIYGGVGLGKTHLMHAVGNRLLADRPDSKVLYIHAEQFVSDVVKAYQRKTFDEFKERYH 219 Query: 109 --KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 +L++D+ D + F+ ++ S ++MT+ T+P L SR Sbjct: 220 SLDLLLIDDVQFFANKDRTQEEFFNAFEALLAKKSHIVMTSDTYPKGLADIHERLVSRFD 279 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + V I P+ + +++ + +++A ++ + + ++ E + K+ + Sbjct: 280 SGLTVAIEPPELEMRVAILINKARAESAEMPEEVAFFVAKNVRSNVRELEGALRKILAYS 339 Query: 224 LSRGMGITRSLAAEVLKET 242 I+ +LA E L++ Sbjct: 340 RFNQKEISIALAREALRDL 358 >gi|283852476|ref|ZP_06369744.1| Chromosomal replication initiator DnaA domain protein [Desulfovibrio sp. FW1012B] gi|283572084|gb|EFC20076.1| Chromosomal replication initiator DnaA domain protein [Desulfovibrio sp. FW1012B] Length = 446 Score = 86.7 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 35/218 (16%), Positives = 73/218 (33%), Gaps = 25/218 (11%) Query: 31 SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLAN----- 82 FP + + L + + L ++ GPSGSGK+ L Sbjct: 108 DFPFGHRFTFETFLANEKNRFPLALAREVARGREVRYNPFLVCGPSGSGKTHLLRAMANA 167 Query: 83 IWSDKSRSTRFSNIAKSLDSIL------------IDTRKPVLLE---DIDLLDFNDTQLF 127 + ++ ++ F L + + + ++ DI + +L Sbjct: 168 VARSQAGASVFFGSVDDLQNRYATSQSRHEIRSEVAAHDWLFIDELTDIQRAPDLEQELI 227 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 + N+ H ++ ++R S P SRL+ +V + PD D + Sbjct: 228 FLFNAFHDAGKQMVFSSRERTASCDFFDPTFKSRLEWGLMVHVKPPDLDVRIASVEAANR 287 Query: 188 DRQIFIDKKLAAYIVQRME--RSLVFAEKLVDKMDNLA 223 D+++ + ++ + R E R L ++ A Sbjct: 288 DKRLGLSREQVLTLASRFEGFRQLEGVLLRIEAFRRHA 325 >gi|149186374|ref|ZP_01864687.1| chromosomal replication initiator protein [Erythrobacter sp. SD-21] gi|148829963|gb|EDL48401.1| chromosomal replication initiator protein [Erythrobacter sp. SD-21] Length = 489 Score = 86.7 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 81/234 (34%), Gaps = 27/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW-----SD 86 ++ + A A + + L +G GK+ L + Sbjct: 154 DASLTFAAFVTGEANILAFNAAQRMAATEKPQFSPLYLKAATGQGKTHLLHAIGHTFLQT 213 Query: 87 KSRSTRFSNIAKSLDSILIDTRKP---------------VLLEDIDLL---DFNDTQLFH 128 +RS F A+ + K +L++DI + +L + Sbjct: 214 HNRSRIFYCSAERFMVEFVQALKANRMIEFKARLRSFDLLLVDDIQFIIGKASAQEELLY 273 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV-KMFA 187 I+++ L+ A P + P L SRL V I D + +K++ K+ Sbjct: 274 TIDALLAEGKRLVFAADRAPQALDGVEPRLLSRLSMGLVADIQPADIELRKKILHSKLTK 333 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + + + + ++ + + R++ ++K+ A G ++ LA E L + Sbjct: 334 FAPLAVPEDVLDFLARTITRNVRELVGGLNKLIAYAQLTGQEVSLQLAEEQLTD 387 >gi|239813020|ref|YP_002941930.1| chromosomal replication initiation protein [Variovorax paradoxus S110] gi|239799597|gb|ACS16664.1| chromosomal replication initiator protein DnaA [Variovorax paradoxus S110] Length = 459 Score = 86.7 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 74/199 (37%), Gaps = 23/199 (11%) Query: 67 VILVGPSGSGKSCLAN-----------------IWSDKSRSTRFSNIAKSLDSILIDTR- 108 + + G G GK+ L + I +++ S + + Sbjct: 160 LFIYGGVGLGKTHLMHAVGNRLLADRPDSKVLYIHAEQFVSDVVKAYQRKTFDEFKERYH 219 Query: 109 --KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 +L++D+ D + F+ ++ S ++MT+ T+P L SR Sbjct: 220 SLDLLLIDDVQFFANKDRTQEEFFNAFEALLAKKSHIVMTSDTYPKGLADIHERLVSRFD 279 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + V I P+ + +++ + +++A ++ + + ++ E + K+ + Sbjct: 280 SGLTVAIEPPELEMRVAILINKARAESAEMPEEVAFFVAKNVRSNVRELEGALRKILAYS 339 Query: 224 LSRGMGITRSLAAEVLKET 242 I+ +LA E L++ Sbjct: 340 RFNQKEISIALAREALRDL 358 >gi|71275534|ref|ZP_00651820.1| chromosomal replication initiator protein, DnaA [Xylella fastidiosa Dixon] gi|71900181|ref|ZP_00682321.1| chromosomal replication initiator protein, DnaA [Xylella fastidiosa Ann-1] gi|170729252|ref|YP_001774685.1| chromosomal replication initiation protein [Xylella fastidiosa M12] gi|71163834|gb|EAO13550.1| chromosomal replication initiator protein, DnaA [Xylella fastidiosa Dixon] gi|71730070|gb|EAO32161.1| chromosomal replication initiator protein, DnaA [Xylella fastidiosa Ann-1] gi|167964045|gb|ACA11055.1| chromosomal replication initiator [Xylella fastidiosa M12] Length = 443 Score = 86.7 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 43/246 (17%), Positives = 85/246 (34%), Gaps = 31/246 (12%) Query: 29 FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGP------SGSGKSCLAN 82 F+ + D+ + + + A P P +G GK+ L Sbjct: 102 PFNGNLDTHYNFDNFVEGRSNQLARAAAWQAAQKPGDRT--HNPLLLYGGTGLGKTHLMF 159 Query: 83 IWSDKSRSTR-------------FSNIAKSLDSILID-------TRKPVLLEDIDLLDFN 122 + R FS + ++L +D +L++DI Sbjct: 160 AAGNVMRQVNPTYKVMYLRSEQFFSAMIRALQDKSMDQFKRQFHQIDALLIDDIQFFAGK 219 Query: 123 D---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179 D + FH N++ +++T +P P L SRL V I PD + Sbjct: 220 DRTQEEFFHTFNALFDGKQQIILTCDRYPREVNGLEPRLKSRLAWGLSVAIDPPDFETRA 279 Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 +++ +R I ++A I ++M ++ E ++ + A G +T + E L Sbjct: 280 AIVLAKARERGATIPDEVAFLIAKKMHSNVRDLEGALNTLVARANFTGRAVTIEFSQETL 339 Query: 240 KETQQC 245 ++ + Sbjct: 340 RDLLRA 345 >gi|270291828|ref|ZP_06198043.1| replication initiation protein DnaA [Streptococcus sp. M143] gi|270279356|gb|EFA25198.1| replication initiation protein DnaA [Streptococcus sp. M143] Length = 453 Score = 86.7 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 32/239 (13%), Positives = 78/239 (32%), Gaps = 30/239 (12%) Query: 35 CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--- 87 + D+ + A+ + + + + G G GK+ L N ++ Sbjct: 116 KEKYTFDNFIQGDGNIWAKSAALAVSEDLAL-TYNPLFIYGGPGLGKTHLLNAIGNEILK 174 Query: 88 ---SRSTRFSNIAKSLDSIL--------------IDTRKPVLLEDIDLLDF----NDTQL 126 ++ ++ L + +L++DI L + Sbjct: 175 NIPEARVKYIPAESFINDFLEHLRLGEMEKFKKTYRSLDLLLIDDIQSLSGKKVATQEEF 234 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 F+ N++H +++T+ P L +R I+ PD + ++ Sbjct: 235 FNTFNALHSNQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQNITPPDFETRIAILQSKT 294 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVLKETQQ 244 Y+ + + ++ E ++ + +A + IT +AAE ++ +Q Sbjct: 295 EHLDYNFQSDTLEYLAGQFDSNVRELEGAINDITLIARVKKIKDITIDIAAEAIRARKQ 353 >gi|313669121|ref|YP_004049405.1| chromosomal replication initiator protein [Neisseria lactamica ST-640] gi|313006583|emb|CBN88048.1| putative chromosomal replication initiator protein [Neisseria lactamica 020-06] Length = 523 Score = 86.7 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 35/231 (15%), Positives = 74/231 (32%), Gaps = 27/231 (11%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRFS 94 + D L+ A + P + L G +G GK+ L ++ R Sbjct: 191 YTFDTLVEGKGNRLAAAAAQAIAESPGQSYNPFFLYGSTGLGKTHLVQAVGNELLKNRPD 250 Query: 95 NIAKSLDS--------------------ILIDTRKPVLLEDIDLLDFND---TQLFHIIN 131 + + S ++++DI + D + F++ N Sbjct: 251 AKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKDRTMEEFFYLYN 310 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 H L++T P L SR +++ P+ + ++ K I Sbjct: 311 HFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRVAILQKKAEAAGI 370 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG-ITRSLAAEVLKE 241 I+ + A +I + ++ E +++ + I LA L++ Sbjct: 371 SIEDEAALFIANLIRSNVRELEGAFNRVSASSRFMNRPVIDMDLARTALQD 421 >gi|332638152|ref|ZP_08417015.1| chromosomal replication initiation protein [Weissella cibaria KACC 11862] Length = 470 Score = 86.7 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 32/239 (13%), Positives = 74/239 (30%), Gaps = 34/239 (14%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87 + + +A + + P +++ G G GK+ L +K Sbjct: 134 NPEFRFETFVSSDENREAYAVAQAVADNPGTQWNPLLIYGGVGLGKTHLMQAIGNKVLEN 193 Query: 88 ---------SRSTRFSNIAKSLDSILIDTRK---------PVLLEDIDLLDFND---TQL 126 + ++ ++L +T +L++D+ L + + Sbjct: 194 NPNAKVKFITTEDFINDFTEALRRGQKETEAFKREYRSTDLLLVDDVQFLAGKEKIQEEF 253 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 F+ N+I + + +++T+ P L +R I+ PD ++ Sbjct: 254 FNTFNAITRENHQIVLTSDKLPKEIPGLEMRLVTRFGQGYSANITKPDLPTRVAILRNKS 313 Query: 187 ADRQIFIDKKLAAYIVQRME---RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + I + I ++ R L V A +T A ++L+ Sbjct: 314 DQENLNIPNDVIDEIAAAVDTNVRDLEGVFNQVAGKLRFASQ---PVTVDTARDILETM 369 >gi|1353854|gb|AAC15822.1| DnaA [Prochlorococcus marinus] Length = 461 Score = 86.7 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 37/243 (15%), Positives = 79/243 (32%), Gaps = 29/243 (11%) Query: 28 LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW 84 L +R +V A + P R + + G G GK+ L Sbjct: 119 LPL-LNLRYVFNR--FVVGPNSRMAHAAAMAVAESPGREFNPLFICGGVGLGKTHLMQAI 175 Query: 85 S------DKSRSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDFND- 123 D + + + +++ +L++DI ++ + Sbjct: 176 GHYRLEIDPGAKVSYVSTETFTNDLILAIRQDRMQAFRDRYRAADLILVDDIQFIEGKEY 235 Query: 124 --TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 + FH N++H S +++ + P L SR + + PD + + Sbjct: 236 TQEEFFHTFNALHDAGSQIVLASDRPPSQIPRLQERLMSRFSMGLIADVQAPDLETRMAI 295 Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + K ++ + + L +I R ++ E + + A G+ +T A +L Sbjct: 296 LQKKAEHERVGLPRDLIQFIAGRFTSNIRELEGALTRAIAFASITGLPMTVDSIAPMLDP 355 Query: 242 TQQ 244 Q Sbjct: 356 NGQ 358 >gi|319940207|ref|ZP_08014560.1| chromosomal replication initiator protein dnaA [Streptococcus anginosus 1_2_62CV] gi|319810678|gb|EFW07008.1| chromosomal replication initiator protein dnaA [Streptococcus anginosus 1_2_62CV] Length = 447 Score = 86.7 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 33/242 (13%), Positives = 78/242 (32%), Gaps = 36/242 (14%) Query: 35 CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS 90 + D+ + A+ + ++ + + + G G GK+ L N ++ Sbjct: 110 KAKYTFDNFVQGDGNVWALSAALAVSENLAT-TYNPLFIYGGPGLGKTHLLNAIGNQILE 168 Query: 91 TRFSNIAKSLDSILI--------------------DTRKPVLLEDIDLLDF----NDTQL 126 K + + + +L++DI L + Sbjct: 169 NIPDARVKYIPAETFINDFLEHLRLGEMESFKRTYRSLDLLLIDDIQSLGGKKVSTQEEF 228 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 F+ N++H + +++T+ P L +R K I+ PD + ++ Sbjct: 229 FNTFNALHGDNKQIVLTSDRSPDHLDNLEERLVTRFKWGLTQNITPPDFETRIAILRNKI 288 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG----MGITRSLAAEVLKET 242 Y+ + + ++ E ++ + +L IT AAE ++ Sbjct: 289 EGLDYIFPNDTLEYLAGQFDSNVRDLEGALNDI---SLMARVKNLKEITIDAAAEAIRAR 345 Query: 243 QQ 244 +Q Sbjct: 346 KQ 347 >gi|15836606|ref|NP_297294.1| chromosomal replication initiation protein [Xylella fastidiosa 9a5c] gi|14194685|sp|Q9PHE3|DNAA_XYLFA RecName: Full=Chromosomal replication initiator protein DnaA gi|9104761|gb|AAF82814.1|AE003855_1 chromosomal replication initiator [Xylella fastidiosa 9a5c] Length = 439 Score = 86.7 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 43/246 (17%), Positives = 85/246 (34%), Gaps = 31/246 (12%) Query: 29 FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGP------SGSGKSCLAN 82 F+ + D+ + + + A P P +G GK+ L Sbjct: 98 PFNGNLDTHYNFDNFVEGRSNQLARAAAWQAAQKPGDRT--HNPLLLYGGTGLGKTHLMF 155 Query: 83 IWSDKSRSTR-------------FSNIAKSLDSILID-------TRKPVLLEDIDLLDFN 122 + R FS + ++L +D +L++DI Sbjct: 156 AAGNVMRQVNPTYKVMYLRSEQFFSAMIRALQDKSMDQFKRQFHQIDALLIDDIQFFAGK 215 Query: 123 D---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179 D + FH N++ +++T +P P L SRL V I PD + Sbjct: 216 DRTQEEFFHTFNALFDGKQQIILTCDRYPREVNGLEPRLKSRLAWGLSVAIDPPDFETRA 275 Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 +++ +R I ++A I ++M ++ E ++ + A G +T + E L Sbjct: 276 AIVLAKARERGATIPDEVAFLIAKKMHSNVRDLEGALNTLVARANFTGRAVTIEFSQETL 335 Query: 240 KETQQC 245 ++ + Sbjct: 336 RDLLRA 341 >gi|307298971|ref|ZP_07578773.1| chromosomal replication initiator protein DnaA [Thermotogales bacterium mesG1.Ag.4.2] gi|306915396|gb|EFN45781.1| chromosomal replication initiator protein DnaA [Thermotogales bacterium mesG1.Ag.4.2] Length = 447 Score = 86.4 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 34/233 (14%), Positives = 74/233 (31%), Gaps = 28/233 (12%) Query: 35 CLGISRDDLLVHSAIEQAVR-LIDSWPSWPSRV--VILVGPSGSGKSCLANIWSDKSRST 91 + + +V S + +D + P + + G G GK+ L + ++ S Sbjct: 105 NPEYTFSNFVVGSENKALYEVALDVTQN-PGKYNPFFVYGGVGLGKTHLLQAIAQETMSN 163 Query: 92 ---------------------RFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLF 127 N + +L++DI L + F Sbjct: 164 FPDKKVLYITSEQFMNDMIQSIKENNIQKFRDHYRKKSDILLIDDIQFLIGKKGVQNEFF 223 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N +H L++ + P L SR + ++ I P + ++ Sbjct: 224 HSFNELHDSGKQLIICSDRNPEELETFHSRLKSRFQMGMLMSIQEPRPSTRFHIAKQLAQ 283 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + +A + ++ +L + K+ + I SLA ++L+ Sbjct: 284 RESVSLPDDVAKVLADNIDGNLRRLRGAIIKLIVHSSVFRSQIDLSLATQILQ 336 >gi|309379508|emb|CBX21874.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 551 Score = 86.4 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 35/231 (15%), Positives = 74/231 (32%), Gaps = 27/231 (11%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRFS 94 + D L+ A + P + L G +G GK+ L ++ R Sbjct: 219 YTFDTLVEGKGNRLAAAAAQAIAESPGQSYNPFFLYGSTGLGKTHLVQAVGNELLKNRPD 278 Query: 95 NIAKSLDS--------------------ILIDTRKPVLLEDIDLLDFND---TQLFHIIN 131 + + S ++++DI + D + F++ N Sbjct: 279 AKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKDRTMEEFFYLYN 338 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 H L++T P L SR +++ P+ + ++ K I Sbjct: 339 HFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRVAILQKKAEAAGI 398 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG-ITRSLAAEVLKE 241 I+ + A +I + ++ E +++ + I LA L++ Sbjct: 399 SIEDEAALFIANLIRSNVRELEGAFNRVSASSRFMNRPVIDMDLARTALQD 449 >gi|85374940|ref|YP_459002.1| chromosomal replication initiation protein [Erythrobacter litoralis HTCC2594] gi|84788023|gb|ABC64205.1| chromosomal replication initiator protein [Erythrobacter litoralis HTCC2594] Length = 488 Score = 86.4 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 77/234 (32%), Gaps = 27/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKS--- 88 ++ + A + + + +G GK+ L + + Sbjct: 153 DASLTFAAFITGETNILACNAAQRMAATEQPQFSPLYIKAGTGQGKTHLLHAIGHQYLAS 212 Query: 89 --RSTRFSNIAKSLDSILIDTRKP---------------VLLEDIDLL---DFNDTQLFH 128 R+ F A+ + K +L++DI + +L + Sbjct: 213 HPRARIFYCSAERFMVEFVQALKANQMIEFKARLRSFDLLLVDDIQFIIGKASAQEELLY 272 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 I+ + L+ A P + P L SRL V I D + +K++ Sbjct: 273 TIDHLLAEGKRLVFAADRAPQALDGVEPRLLSRLSMGLVADIQAADIELRKKILESKLTR 332 Query: 189 -RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + + + + ++ + + R++ ++K+ A G ++ LA E L + Sbjct: 333 FAPLDVPEDVIEFLARTITRNVRELVGGLNKLIAYAQLTGQVVSLQLAEEQLTD 386 >gi|145641119|ref|ZP_01796700.1| hypothetical protein CGSHiR3021_08616 [Haemophilus influenzae R3021] gi|145274280|gb|EDK14145.1| hypothetical protein CGSHiR3021_08616 [Haemophilus influenzae 22.4-21] Length = 113 Score = 86.4 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 13/108 (12%) Query: 71 GPSGSGKSCLANIWSDKS----RSTRFSNIAKS-----LDSILIDTRKPVLLEDIDLLDF 121 G GSGK+ L +S++ R+ + ++KS ++ ++ V L+D+ + Sbjct: 2 GNKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQYFSTAVLENLEQQELVCLDDLQSVIG 61 Query: 122 NDT---QLFHIINSIHQYDSSLLM-TARTFPVSWGVCLPDLCSRLKAA 165 ND +F + N I +LL+ +A P + V LPDL SRL Sbjct: 62 NDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWG 109 >gi|269214503|ref|ZP_05986706.2| replication initiation protein DnaA [Neisseria lactamica ATCC 23970] gi|269209657|gb|EEZ76112.1| replication initiation protein DnaA [Neisseria lactamica ATCC 23970] Length = 559 Score = 86.4 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 35/231 (15%), Positives = 74/231 (32%), Gaps = 27/231 (11%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRFS 94 + D L+ A + P + L G +G GK+ L ++ R Sbjct: 227 YTFDTLVEGKGNRLAAAAAQAIAESPGQSYNPFFLYGSTGLGKTHLVQAVGNELLKNRPD 286 Query: 95 NIAKSLDS--------------------ILIDTRKPVLLEDIDLLDFND---TQLFHIIN 131 + + S ++++DI + D + F++ N Sbjct: 287 AKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKDRTMEEFFYLYN 346 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 H L++T P L SR +++ P+ + ++ K I Sbjct: 347 HFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRVAILQKKAEAAGI 406 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG-ITRSLAAEVLKE 241 I+ + A +I + ++ E +++ + I LA L++ Sbjct: 407 SIEDEAALFIANLIRSNVRELEGAFNRVSASSRFMNRPVIDMDLARTALQD 457 >gi|160914813|ref|ZP_02077027.1| hypothetical protein EUBDOL_00820 [Eubacterium dolichum DSM 3991] gi|158433353|gb|EDP11642.1| hypothetical protein EUBDOL_00820 [Eubacterium dolichum DSM 3991] Length = 459 Score = 86.4 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 86/235 (36%), Gaps = 28/235 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN--------- 82 + D +V +A S +P + + + G SG GK+ L + Sbjct: 121 NPEYTFDSFVVGKNNREAHAASLSACYYPGKFNNPLFIFGNSGLGKTHLLHAIGNYIKEN 180 Query: 83 --------IWSDKSRSTRFSNIAKSLDSILID---TRKPVLLEDIDLL--DFNDTQLFHI 129 I+S+ + + + + + +L++DI L + F++ Sbjct: 181 RPEDKVLYIYSEDFVTLLIEAMKNKNVEEVKEKICSADYLLIDDIQRLKQSTSQELFFNM 240 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N + + + +++T+ P L SR + V + P+ + + ++ K R Sbjct: 241 YNKLIRDNKQIVITSDIHPTELKGIENRLISRFSSGLSVSVGSPEFETAKAILQKKIEGR 300 Query: 190 Q--IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA-LSRGMGITRSLAAEVLKE 241 I I+ ++ Y+ R + E ++++ + L I A E+ KE Sbjct: 301 NEEILIEDEVLDYLATRFASDVRKLEGALNELFFKSILYNPDTIDLKFAKEIFKE 355 >gi|323699689|ref|ZP_08111601.1| Chromosomal replication initiator DnaA domain [Desulfovibrio sp. ND132] gi|323459621|gb|EGB15486.1| Chromosomal replication initiator DnaA domain [Desulfovibrio desulfuricans ND132] Length = 432 Score = 86.4 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 41/247 (16%), Positives = 85/247 (34%), Gaps = 33/247 (13%) Query: 3 LMKEDYSFFVPDKQKNDQPKNKEEQLF-----FSFPRCLGISRDDLLVHSAIEQAVRLID 57 + Y D + D+P+ Q+ FP + D L++ + Sbjct: 64 FLGNGYVVSYKDSETQDRPRG--VQVSDVVKRIDFPFGQEFTFDTFLINKKNYFPIASAK 121 Query: 58 SWPSWPSRVV---ILVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSIL----- 104 + I+ GP GSGK+ L I ST F + L+S+ Sbjct: 122 EVAKQSGSLFNPFIICGPGGSGKTHLLKSVGNEIAKKHDYSTIFMGSLEELNSLYSIRFK 181 Query: 105 ---------IDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWG 152 + + ++D + + +L +I N + +++ R S+ Sbjct: 182 GDPFKARNHLFDYNFLFIDDFHKIKEHPHFQQELVNIFNHFYDNKKQMVLACREKVTSYD 241 Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 +L SRL +V + PD + I + +++ + K+ + QR + Sbjct: 242 FLDDNLQSRLGWGLIVTLKEPDLEIRVGYIQRQARAKRLSLTKEQVLTLAQRFT-DFRYL 300 Query: 213 EKLVDKM 219 + ++ K+ Sbjct: 301 QGILLKL 307 >gi|326405598|gb|ADZ62669.1| chromosomal replication initiator protein [Lactococcus lactis subsp. lactis CV56] Length = 455 Score = 86.4 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 26/245 (10%), Positives = 87/245 (35%), Gaps = 29/245 (11%) Query: 29 FFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 + ++ + A+ + D + + G +G GK+ L + Sbjct: 113 PLVSGLNEKYNFENFVQGPGNRWTLAAAIAVADKPGD-TYNPLFIYGGAGLGKTHLMHAI 171 Query: 85 SDK-----SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL------------------DF 121 ++ + +++ + ++ + +E+ + + Sbjct: 172 GNQILTDNPTARIKYVSSENFVNDYVNATRKNQMENFENTYRNLDLLLLDDVQFFSDKEG 231 Query: 122 NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 + F+ N+++ S +++T+ P L SR I+ PD + + Sbjct: 232 TKNEFFNTFNALYDKGSQIVLTSDRIPQELNNLEDRLVSRFSWGLTTDITAPDYETRMAI 291 Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG-ITRSLAAEVLK 240 ++ ++ + +YI +++ ++ E +++++ +A + G+ + A++ L+ Sbjct: 292 LLIKSESSRLEFPSETLSYIAGQIDSNVRELEGALNRVEFVARANGIAVVDIETASQALR 351 Query: 241 ETQQC 245 + Sbjct: 352 SLKNA 356 >gi|163867415|ref|YP_001608612.1| chromosomal replication initiation protein [Bartonella tribocorum CIP 105476] gi|161017059|emb|CAK00617.1| chromosomal replication initiator protein DnaA [Bartonella tribocorum CIP 105476] Length = 523 Score = 86.4 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 33/207 (15%), Positives = 64/207 (30%), Gaps = 32/207 (15%) Query: 29 FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVV-----ILVGPSGSGKSCLANI 83 F P + + + ++ A+ S + + G GK+ L Sbjct: 174 VFGSPLDSRYTFESFVEGASNRVALAAARSIAEGHKSALRFNPLFIHASVGLGKTHLLQA 233 Query: 84 WSDKSRSTRFSNIAKSLDSILIDTRKPVLLED------------IDLLDFNDTQLF---- 127 + + S L + R + D IDLL +D Q Sbjct: 234 IAASALKRLTSARVIYLTAEYFMWRFATAIRDNDALSFKEQLRDIDLLIIDDMQFLQGKS 293 Query: 128 ------HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 H++N + +++ A P + SRL+ ++I PD + ++ Sbjct: 294 IQHEFCHLLNMLLDSAKQVVVAADRPPAELESLDLRVRSRLQGGVSLEIEAPDYEMRLQM 353 Query: 182 IVKMFADRQ-----IFIDKKLAAYIVQ 203 + + Q I I + YI + Sbjct: 354 LRQRLKVAQQDDGMISISDDVLEYIAK 380 >gi|15671983|ref|NP_266157.1| chromosomal replication initiation protein [Lactococcus lactis subsp. lactis Il1403] gi|281490499|ref|YP_003352479.1| chromosomal replication initiator protein DnaA [Lactococcus lactis subsp. lactis KF147] gi|14194668|sp|Q9CJJ2|DNAA_LACLA RecName: Full=Chromosomal replication initiator protein DnaA gi|12722836|gb|AAK04099.1|AE006239_1 replication initiation protein DnaA [Lactococcus lactis subsp. lactis Il1403] gi|281374317|gb|ADA63850.1| Chromosomal replication initiator protein DnaA [Lactococcus lactis subsp. lactis KF147] Length = 455 Score = 86.4 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 26/245 (10%), Positives = 87/245 (35%), Gaps = 29/245 (11%) Query: 29 FFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 + ++ + A+ + D + + G +G GK+ L + Sbjct: 113 PLVSGLNEKYNFENFVQGPGNRWTLAAAIAVADKPGD-TYNPLFIYGGAGLGKTHLMHAI 171 Query: 85 SDK-----SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL------------------DF 121 ++ + +++ + ++ + +E+ + + Sbjct: 172 GNQILTDNPTARIKYVSSENFVNDYVNATRKNQMENFENTYRNLDLLLLDDVQFFSDKEG 231 Query: 122 NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 + F+ N+++ S +++T+ P L SR I+ PD + + Sbjct: 232 TKNEFFNTFNALYDKGSQIVLTSDRIPQELNNLEDRLVSRFSWGLTTDITAPDYETRMAI 291 Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG-ITRSLAAEVLK 240 ++ ++ + +YI +++ ++ E +++++ +A + G+ + A++ L+ Sbjct: 292 LLIKSESSRLEFPSETLSYIAGQIDSNVRELEGALNRVEFVARANGIAVVDIETASQALR 351 Query: 241 ETQQC 245 + Sbjct: 352 SLKNA 356 >gi|198282149|ref|YP_002218470.1| chromosomal replication initiator protein DnaA [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665582|ref|YP_002427662.1| chromosomal replication initiator protein DnaA [Acidithiobacillus ferrooxidans ATCC 23270] gi|198246670|gb|ACH82263.1| chromosomal replication initiator protein DnaA [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517795|gb|ACK78381.1| chromosomal replication initiator protein DnaA [Acidithiobacillus ferrooxidans ATCC 23270] Length = 452 Score = 86.4 bits (213), Expect = 4e-15, Method: Composition-based stats. Identities = 36/238 (15%), Positives = 79/238 (33%), Gaps = 34/238 (14%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW--SDKSR 89 G S + + + AV P + + + G G GK+ L + R Sbjct: 118 NPGFSFQSYVEGKSNQLAVAAARQVAQNPGKSYNPLYIYGGVGLGKTHLMQAVGNAILQR 177 Query: 90 STRFSNIAKSLDSILID------------------TRKPVLLEDIDLLDFND---TQLFH 128 + + S + ++D +L++DI D + FH Sbjct: 178 NADAKVLYVSSEGFIMDMVRSLQHNTINDFKQRYRKLDALLIDDIQFFAGKDRTQEEFFH 237 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++ +++T +P L SR V I D + +++ + Sbjct: 238 TFNALFDGGRQIIITCDRYPKEVDRLEERLQSRFGWGLTVAIQPHDLETRMAIVLCKAEE 297 Query: 189 RQIFIDKKLAAYIVQRME---RSLV-FAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + +++A +I +++ R L ++V ++ A E L++ Sbjct: 298 SGVDLPEEVAFFIAEKIRSHVRELEGALRRVVAHVNF----THKPYNLDTAREALRDL 351 >gi|298529136|ref|ZP_07016539.1| chromosomal replication initiator protein DnaA [Desulfonatronospira thiodismutans ASO3-1] gi|298510572|gb|EFI34475.1| chromosomal replication initiator protein DnaA [Desulfonatronospira thiodismutans ASO3-1] Length = 449 Score = 86.4 bits (213), Expect = 4e-15, Method: Composition-based stats. Identities = 42/237 (17%), Positives = 85/237 (35%), Gaps = 28/237 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSW--PSWPSRVVILVGPSGSGKSCL------------ 80 S D +V + E A S+ S + L +G GK+ L Sbjct: 114 RFRYSFQDFVVGPSNELAFVASRSFCREQVSSDQLFLCSSTGLGKTHLVQSMGNNLAGSS 173 Query: 81 -------ANIWSDKSRSTRFSNIA----KSLDSILIDTRKPVLLEDIDLLDFNDT---QL 126 A + +++ I + + D ++LEDI + + Sbjct: 174 NKEALRVAYLTAEEFACQLIQAIKSKQVERFKARYRDQIDILMLEDIHFFQGKEKIQGEF 233 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 INS+ +++++ P +L SRL + I PD ++++ + Sbjct: 234 LSTINSLQGQGKKVVLSSSFLPKELNDLDSNLVSRLCRGFMAVIDKPDLGTRQEILRQKA 293 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 + QI + ++++ + +R++ + E + + A IT +A EVLK Sbjct: 294 SSLQISLPQEVSHLLAERIQTDIRQLESCLSNLVFKARMLKERITLEMALEVLKNYD 350 >gi|322375216|ref|ZP_08049730.1| replication initiation protein DnaA [Streptococcus sp. C300] gi|321280716|gb|EFX57755.1| replication initiation protein DnaA [Streptococcus sp. C300] Length = 453 Score = 86.0 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 33/238 (13%), Positives = 76/238 (31%), Gaps = 28/238 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91 + D+ + AV + + + + G G GK+ L N ++ Sbjct: 116 KEKYTFDNFIQGDGNVWAVSAALAVSEDLALTYNPLFIYGGPGLGKTHLLNAIGNEILKN 175 Query: 92 RFSNIAKSLDSILI--------------------DTRKPVLLEDIDLLDF----NDTQLF 127 K + + + +L++DI L + F Sbjct: 176 IPDARVKYIPAESFINDFLEHLRLGEMEKFKKTYRSLDLLLIDDIQSLSGKKVATQEEFF 235 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 + N++H +++T+ P L +R I+ PD + ++ Sbjct: 236 NTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQNITPPDFETRIAILQSKTE 295 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA-LSRGMGITRSLAAEVLKETQQ 244 Y+ + + ++ E ++ + +A + IT +AAE ++ +Q Sbjct: 296 HLDYHFQSDTLEYLAGQFDSNVRELEGAINDITLIARVKNIKDITIDIAAEAIRARKQ 353 >gi|291276244|ref|YP_003516016.1| chromosomal replication initiator protein [Helicobacter mustelae 12198] gi|290963438|emb|CBG39267.1| chromosomal replication initiator protein [Helicobacter mustelae 12198] Length = 429 Score = 86.0 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 40/234 (17%), Positives = 84/234 (35%), Gaps = 24/234 (10%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91 + + + + + A + I V+ G +G GK+ L N +K Sbjct: 99 NASYTFETFIQGDSNKFAYEIAKKICEKQGKAYNPVLFYGGTGLGKTHLLNAIGNKVIEK 158 Query: 92 RFSNIAKSLDSILIDTRK------------------PVLLEDIDLLDFN---DTQLFHII 130 S I + + L D + +L++DI + FH Sbjct: 159 NKSVIYITSEQFLNDYSERLKSNTMEKFREKYRNCDYLLIDDIQFFAGKIQIQEEFFHTF 218 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N +H + +++TA L SR + I P + ++I + Sbjct: 219 NELHLKNKQIVITADKSLKQILGLEERLKSRCEWGITADIQPPGIETKIEIIKQKCIIHH 278 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 + I++ + + + ++ E ++ K++ L L G IT S+A +K+ ++ Sbjct: 279 VEINQDIIECLAYNIGGNIRQIEGIILKLNALPLLIGQPITLSMAQNAIKDIRK 332 >gi|328541625|ref|YP_004301734.1| Chromosomal replication initiator protein dnaA [polymorphum gilvum SL003B-26A1] gi|326411377|gb|ADZ68440.1| Chromosomal replication initiator protein dnaA [Polymorphum gilvum SL003B-26A1] Length = 491 Score = 86.0 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 35/239 (14%), Positives = 78/239 (32%), Gaps = 28/239 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRST 91 + + + + A+ S + L G GK+ L + K+R++ Sbjct: 154 DPKYTFETFVEGESNGLALAAAKQVASGGAVTFNPLYLHAAVGLGKTHLMQAVATKARAS 213 Query: 92 RFSNIAKSLDS------ILIDTRKPVL----LEDIDLLDFNDTQLFH----------IIN 131 + + + + + + L IDLL +D Q H +N Sbjct: 214 GRKVLYLTAEHFMYRFVAALKAQSALAFKETLRTIDLLLIDDMQFLHGKQVQQEFCHTLN 273 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD--- 188 ++ +++ A P + SRL VV I+ PD ++ A Sbjct: 274 ALIDGARQVIVAADRAPSELDTLDDRVRSRLSGGLVVGIAEPDFALRRNILGARVATLKK 333 Query: 189 --RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 + + Y+ + + S E ++++ +T+ +A L++ + Sbjct: 334 SYPNFTVPDGVLDYVARHVVSSGRDLEGALNRLVAHNQLTNQPVTQDMAELTLRDLIRT 392 >gi|262039497|ref|ZP_06012799.1| chromosomal replication initiator protein DnaA [Leptotrichia goodfellowii F0264] gi|261746478|gb|EEY34015.1| chromosomal replication initiator protein DnaA [Leptotrichia goodfellowii F0264] Length = 453 Score = 86.0 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 36/237 (15%), Positives = 78/237 (32%), Gaps = 33/237 (13%) Query: 41 DDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI-------------- 83 D+ +V A + + V + + G SG GK+ L Sbjct: 120 DNFIVGDNSRMAYNACLAVLENEAPVYNPLFIYGGSGLGKTHLMQAVGNAILERNPEKRV 179 Query: 84 -------WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID-------LLDFN-DTQLFH 128 +S++ + K+ +LL+DI + + + FH Sbjct: 180 LYTTTEEFSNEFIAAIKEGRIKNFRDTF-RNLDVLLLDDIQFFERIFGRGMGDTEEEFFH 238 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N + + ++M + +P L SR + +I P + + ++ + Sbjct: 239 TFNKLQESGKQIIMISDRYPQDIKNLSKRLESRFISGLSTEILEPGYETRKAILENIVEI 298 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 + I ID + YI + + ++ E ++ ++ A IT + L + Sbjct: 299 KNIEIDDNILEYIAESVSSNVRELEGILTLINARAKLLNEKITLQQVQDELSTRMRS 355 >gi|192288434|ref|YP_001989039.1| chromosomal replication initiation protein [Rhodopseudomonas palustris TIE-1] gi|226735837|sp|B3QJZ9|DNAA_RHOPT RecName: Full=Chromosomal replication initiator protein DnaA gi|192282183|gb|ACE98563.1| chromosomal replication initiator protein DnaA [Rhodopseudomonas palustris TIE-1] Length = 472 Score = 86.0 bits (212), Expect = 5e-15, Method: Composition-based stats. Identities = 30/245 (12%), Positives = 80/245 (32%), Gaps = 32/245 (13%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWP------SRVVILVGPSGSGKSCLANI--W 84 P ++ +V + A + + G GK+ L W Sbjct: 129 PLDPRLTFASFVVGRSNTLAHAAAKQVAEGRRGDPVMFNPLYIHSGVGLGKTHLLQAVTW 188 Query: 85 SDKSRSTR-------------FSNIAKSLDSIL----IDTRKPVLLEDIDLLDF--NDTQ 125 + + + R F K+ S+ + ++++D+ L + Sbjct: 189 AGNAGTERKVLYLTAEKFMYGFVAALKTQTSLAFKEALRGIDVLVIDDLQFLQGKTTQAE 248 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 H +N++ +++ A P + SRL VV+++ +D ++ Sbjct: 249 FCHTLNALIDAGRQVVVAADRPPADLESLDERVRSRLAGGLVVEMAPLGEDLRLGILRSR 308 Query: 186 -FADR----QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 A R + + + Y+ + + + E ++++ + +T +A ++ Sbjct: 309 VVAARTHHASFDVPQPVLEYLARTITHNGRDLEGAINRLLAHSKLNNQPVTLEMAEHEVR 368 Query: 241 ETQQC 245 + + Sbjct: 369 DLIRP 373 >gi|16752614|ref|NP_444878.1| chromosomal replication initiation protein [Chlamydophila pneumoniae AR39] gi|7189257|gb|AAF38184.1| chromosomal replication initiator protein DnaA [Chlamydophila pneumoniae AR39] Length = 467 Score = 86.0 bits (212), Expect = 5e-15, Method: Composition-based stats. Identities = 40/243 (16%), Positives = 88/243 (36%), Gaps = 35/243 (14%) Query: 30 FSFPRCLGISRDDLLVHSAIEQ---AVRLIDSWPSWPSRVVILVGPSGSGKSCLAN---- 82 F L D+ + + + A I P + + G G GK+ L + Sbjct: 129 FELKLNLSYRFDNFIEGPSNQFVKSAAVGIAGKPGRSYNPLFIHGGVGLGKTHLLHAVGH 188 Query: 83 ----------IWSDKSRSTR----FSNIAKSLDSI--LIDTRKPVLLEDI----DLLDFN 122 I + + + +KS+D + + +L++DI + +F Sbjct: 189 YVREHHKNLRIHCITTEAFINDLVYHLKSKSVDKMKNFYRSLDLLLVDDIQFLQNRQNFE 248 Query: 123 DT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179 + +IN Q +++T+ P + + +R++ V + +PD + Sbjct: 249 EEFCNTFETLINLSKQ----IVITSDKPPSQLKLS-ERIIARMEWGLVAHVGIPDLETRV 303 Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 ++ + + I ++A YI + ++ E ++K+ G +T + E L Sbjct: 304 AILQHKAEQKGLLIPNEMAFYIADHIYGNVRQLEGAINKLTAYCRLFGKSLTETTVRETL 363 Query: 240 KET 242 KE Sbjct: 364 KEL 366 >gi|15618339|ref|NP_224624.1| chromosomal replication initiation protein [Chlamydophila pneumoniae CWL029] gi|15835957|ref|NP_300481.1| chromosomal replication initiation protein [Chlamydophila pneumoniae J138] gi|33241773|ref|NP_876714.1| chromosomal replication initiation protein [Chlamydophila pneumoniae TW-183] gi|14194706|sp|Q9Z8B9|DNAA2_CHLPN RecName: Full=Chromosomal replication initiator protein DnaA 2 gi|4376705|gb|AAD18568.1| Replication Initiation Factor [Chlamydophila pneumoniae CWL029] gi|8978796|dbj|BAA98632.1| replication initiation factor [Chlamydophila pneumoniae J138] gi|33236282|gb|AAP98371.1| replication initiation protein dnaA [Chlamydophila pneumoniae TW-183] gi|269303303|gb|ACZ33403.1| chromosomal replication initiator protein DnaA [Chlamydophila pneumoniae LPCoLN] Length = 450 Score = 86.0 bits (212), Expect = 5e-15, Method: Composition-based stats. Identities = 40/243 (16%), Positives = 88/243 (36%), Gaps = 35/243 (14%) Query: 30 FSFPRCLGISRDDLLVHSAIEQ---AVRLIDSWPSWPSRVVILVGPSGSGKSCLAN---- 82 F L D+ + + + A I P + + G G GK+ L + Sbjct: 112 FELKLNLSYRFDNFIEGPSNQFVKSAAVGIAGKPGRSYNPLFIHGGVGLGKTHLLHAVGH 171 Query: 83 ----------IWSDKSRSTR----FSNIAKSLDSI--LIDTRKPVLLEDI----DLLDFN 122 I + + + +KS+D + + +L++DI + +F Sbjct: 172 YVREHHKNLRIHCITTEAFINDLVYHLKSKSVDKMKNFYRSLDLLLVDDIQFLQNRQNFE 231 Query: 123 DT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179 + +IN Q +++T+ P + + +R++ V + +PD + Sbjct: 232 EEFCNTFETLINLSKQ----IVITSDKPPSQLKLS-ERIIARMEWGLVAHVGIPDLETRV 286 Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 ++ + + I ++A YI + ++ E ++K+ G +T + E L Sbjct: 287 AILQHKAEQKGLLIPNEMAFYIADHIYGNVRQLEGAINKLTAYCRLFGKSLTETTVRETL 346 Query: 240 KET 242 KE Sbjct: 347 KEL 349 >gi|149173671|ref|ZP_01852300.1| chromosomal replication initiation protein [Planctomyces maris DSM 8797] gi|148847201|gb|EDL61535.1| chromosomal replication initiation protein [Planctomyces maris DSM 8797] Length = 505 Score = 86.0 bits (212), Expect = 5e-15, Method: Composition-based stats. Identities = 32/228 (14%), Positives = 76/228 (33%), Gaps = 26/228 (11%) Query: 43 LLVHSAIEQAVRLIDSW---PSWPSRVVILVGPSGSGKSCLANIWSDKSR---------- 89 + + + A P + + G G GK+ L + K R Sbjct: 169 FITGKSNQLAYMATQQASEQPGALYNPLFIHGGVGLGKTHLLEGFYRKIRQQYPSLQVVF 228 Query: 90 --STRFSNIAKSLDSILIDTR--------KPVLLEDIDLLDFN---DTQLFHIINSIHQY 136 + F N ++++DID + +L H I + + Sbjct: 229 LTAESFGNYFSKALQERSLPGFRQRFRNVDVLIIDDIDFFESKHNFQEELLHTIKHLESH 288 Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196 L+ ++ P +L +R + V ++ P+ + ++ + + I Sbjct: 289 GRQLIFSSDRHPRLLTKMSEELTTRFLSGLVCRVESPETELRLQIARQRALQLKTPITDG 348 Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 Y+ +R ++ E ++ + + IT ++A +VL + ++ Sbjct: 349 ALEYVARRFSHNVRELEGAMNCLQTWHVMTKQKITTTMARQVLADLER 396 >gi|118590460|ref|ZP_01547862.1| chromosomal replication initiation protein [Stappia aggregata IAM 12614] gi|118436923|gb|EAV43562.1| chromosomal replication initiation protein [Stappia aggregata IAM 12614] Length = 491 Score = 86.0 bits (212), Expect = 5e-15, Method: Composition-based stats. Identities = 38/260 (14%), Positives = 86/260 (33%), Gaps = 32/260 (12%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILV 70 + +D ++ + + + + + A+ + + L Sbjct: 137 GETSSDNARDVLQGAALD----PKYTFETFVEGESNNLALAAARQVAAGGAVTFNPLYLH 192 Query: 71 GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS------ILIDTRKPVL----LEDIDLLD 120 G GK+ L + K+R++ + + + + ++ + L IDLL Sbjct: 193 ASVGLGKTHLMQAVAAKARASGRKVLYLTAEHFMYKFVAALKSQSALAFKENLRTIDLLL 252 Query: 121 FNDTQLFH----------IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 +D Q H +N++ +++ A P + SRL VV I Sbjct: 253 IDDMQFLHGKQVQQEFCHTLNALIDGARQVIVAADRAPSELDTLDDRVRSRLSGGLVVGI 312 Query: 171 SLPDDDFLEKVIVKM--FADR---QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 PD ++ A R Q + + Y+ + + S E ++++ Sbjct: 313 QEPDFALRRNILATRVDTARRNYPQFDVPDSVLDYVARHVASSGRDLEGALNRLIAHNQL 372 Query: 226 RGMGITRSLAAEVLKETQQC 245 IT+ +A L++ + Sbjct: 373 TNQPITQEMAEMTLRDLVRS 392 >gi|167041926|gb|ABZ06664.1| putative bacterial DnaA protein [uncultured marine microorganism HF4000_137B17] Length = 418 Score = 85.6 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 31/211 (14%), Positives = 72/211 (34%), Gaps = 31/211 (14%) Query: 39 SRDDLLVHSAIEQAVRLIDSW--PSWPSRVVILVGPSGSGKSCLANIW------------ 84 S D+ +V + E A S + + G GK+ L N Sbjct: 87 SFDNFMVGESNELAYTAARKVCNQSSHYNPLFIYSVVGMGKTHLLNAIGLDIENSKQIMF 146 Query: 85 --SDKSRSTRFSNIAKSLDSILID---TRKPVLLEDIDLLDFND---TQLFHIINSIHQY 136 +++ +I + D +++DI + + + FH N++ + Sbjct: 147 ISAERFMYHFIRSIKSNDMVKFKDFFRKANVFIIDDIQFVAGKEAMQEEFFHTFNALMER 206 Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD------RQ 190 S +++ + P + + SRL V+ I PD + K++ F D Sbjct: 207 GSQIVVASDRSPSNLDRVQGRIKSRLSGGLVIDIQPPDLNLRIKILRSKFEDIKKNFNEN 266 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 ++ ++ ++ + ++V ++ Sbjct: 267 YNLNDEVFKFLATEIT---SSIREMVGALNR 294 >gi|39933081|ref|NP_945357.1| chromosomal replication initiation protein [Rhodopseudomonas palustris CGA009] gi|61212615|sp|Q6NDV3|DNAA_RHOPA RecName: Full=Chromosomal replication initiator protein DnaA gi|39652706|emb|CAE25445.1| chromosomal replication initiator protein DnaA [Rhodopseudomonas palustris CGA009] Length = 472 Score = 85.6 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 30/245 (12%), Positives = 80/245 (32%), Gaps = 32/245 (13%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWP------SRVVILVGPSGSGKSCLANI--W 84 P ++ +V + A + + G GK+ L W Sbjct: 129 PLDPRLTFASFVVGRSNTLAHAAAKQVAEGRRGDPVMFNPLYIHSGVGLGKTHLLQAVTW 188 Query: 85 SDKSRSTR-------------FSNIAKSLDSIL----IDTRKPVLLEDIDLLDF--NDTQ 125 + + + R F K+ S+ + ++++D+ L + Sbjct: 189 AGNAGTERKVLYLTAEKFMYGFVAALKTQTSLAFKEALRGIDVLVIDDLQFLQGKTTQAE 248 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 H +N++ +++ A P + SRL VV+++ +D ++ Sbjct: 249 FCHTLNALIDAGRQVVVAADRPPADLESLDERVRSRLAGGLVVEMAPLGEDLRLGILRSR 308 Query: 186 -FADR----QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 A R + + + Y+ + + + E ++++ + +T +A ++ Sbjct: 309 VVAARTHHASFDVPQPVLEYLARTITHNGRDLEGAINRLLAHSKLNNQPVTLEMAEHEVR 368 Query: 241 ETQQC 245 + + Sbjct: 369 DLIRP 373 >gi|289677081|ref|ZP_06497971.1| DNA replication initiation factor [Pseudomonas syringae pv. syringae FF5] Length = 83 Score = 85.6 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 36/81 (44%) Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218 SRL A V ++ D+ + + + R + + + +I+ R RS+ +L+++ Sbjct: 1 KSRLTMALVFQMRGLSDEDKLRALQLRASRRGLHLTDDVGHFILTRGTRSMSALFELLER 60 Query: 219 MDNLALSRGMGITRSLAAEVL 239 +D +L +T E L Sbjct: 61 LDQASLQEKRKLTIPFLKETL 81 >gi|325282256|ref|YP_004254797.1| Chromosomal replication initiator protein dnaA [Deinococcus proteolyticus MRP] gi|324314065|gb|ADY25180.1| Chromosomal replication initiator protein dnaA [Deinococcus proteolyticus MRP] Length = 494 Score = 85.6 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 33/237 (13%), Positives = 91/237 (38%), Gaps = 26/237 (10%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI----WSDK 87 + ++ +V A + P + + + G G GK+ L + ++K Sbjct: 153 NPKYTFENFVVGPNNNLAHAAALAVAESPGKAYNPLFIYGDVGLGKTHLMHAVGHYLAEK 212 Query: 88 SRSTRFSNIA-KSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 R + ++ +S + LI++ + +L++DI L + + FH Sbjct: 213 YPEKRIAYVSTESFTNELINSIRDDKTTQFRDRYRSVDLLLVDDIQFLARKERTQEEFFH 272 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++++ +++++ P L SR + + I P+ + ++ Sbjct: 273 TFNALYENHKQIILSSDRPPKDIQTLEGRLRSRFEWGLITDIQSPEFETRVAILKMNAEQ 332 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 I I +++ I +++ ++ E + ++ + + +R++A++ L Sbjct: 333 ANINIPQEVLELIARQVTTNIRELEGALMRVVAFSSLNNVPFSRAVASKALSNVFAP 389 >gi|316931397|ref|YP_004106379.1| chromosomal replication initiator protein DnaA [Rhodopseudomonas palustris DX-1] gi|315599111|gb|ADU41646.1| chromosomal replication initiator protein DnaA [Rhodopseudomonas palustris DX-1] Length = 469 Score = 85.2 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 31/245 (12%), Positives = 80/245 (32%), Gaps = 32/245 (13%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWP------SRVVILVGPSGSGKSCLANI--W 84 P ++ +V + A + + G GK+ L W Sbjct: 126 PLDPRLTFASFVVGRSNTLAHAAAKQVAEGRRGDPVMFNPLYIHSGVGLGKTHLLQAVTW 185 Query: 85 SDKSRSTR-------------FSNIAKSLDSIL----IDTRKPVLLEDIDLLDF--NDTQ 125 + + S R F K+ S+ + ++++D+ L + Sbjct: 186 AGNAGSERKVLYLTAEKFMYGFVAALKTQTSLAFKEALRGIDVLVIDDLQFLQGKTTQAE 245 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 H +N++ +++ A P + SRL VV+++ +D ++ Sbjct: 246 FCHTLNALIDAGRQVVVAADRPPSDLESLDERVRSRLAGGLVVEMAPLGEDLRLGILRSR 305 Query: 186 -FADR----QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 A R + + + Y+ + + + E ++++ + +T +A ++ Sbjct: 306 VVAARAHHVSFDVPQPVLEYLARTITHNGRDLEGAINRLLAHSKLNNQPVTLEMAEHEVR 365 Query: 241 ETQQC 245 + + Sbjct: 366 DLIRP 370 >gi|148251627|ref|YP_001236212.1| chromosomal replication initiation protein [Bradyrhizobium sp. BTAi1] gi|166201861|sp|A5E812|DNAA_BRASB RecName: Full=Chromosomal replication initiator protein DnaA gi|146403800|gb|ABQ32306.1| Chromosomal replication initiator protein [Bradyrhizobium sp. BTAi1] Length = 475 Score = 85.2 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 29/245 (11%), Positives = 77/245 (31%), Gaps = 32/245 (13%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWP------SRVVILVGPSGSGKSCLANI--W 84 P ++ +V A A + + G GK+ L W Sbjct: 132 PLDPRLTFASFVVGRANTLAHAAARQVADGRRGDPVMFNPLYIHAGVGLGKTHLLQAVTW 191 Query: 85 SDKSRSTR-------------FSNIAKSLDSIL----IDTRKPVLLEDIDLLDF--NDTQ 125 + + R F KS ++ + ++++D+ L + Sbjct: 192 AGNAGGERKVLYLTAEKFMYGFVAALKSQTALAFKEALRGIDVLVIDDLQFLQGKSTQAE 251 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK- 184 H +N++ +++ A P + SRL VV+++ +D ++ Sbjct: 252 FCHTLNALIDAGRQVVIAADRPPSDLESLDDRVRSRLAGGLVVEMATLGEDLRLGILKSR 311 Query: 185 ----MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + + Y+ + + + E ++++ + +T +A ++ Sbjct: 312 VAAARAHHASFDVPEPVLDYLARSITHNGRDLEGAINRLLAHSKLNNQPVTLDMAEREVR 371 Query: 241 ETQQC 245 + + Sbjct: 372 DLVRP 376 >gi|122912897|gb|ABM68012.1| DnaA [Epulopiscium sp. 'N.t. morphotype B'] Length = 232 Score = 85.2 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 29/190 (15%), Positives = 73/190 (38%), Gaps = 23/190 (12%) Query: 76 GKSCLANIWS-----------------DKSRSTRFSNIAKSLDSILIDTRKPV---LLED 115 GK+ L + +K + ++I ++ + + + L++D Sbjct: 2 GKTHLMQSIAHFTLKHHPNLKVLYTSTEKFTNELINSIRDDQNNAFRNKYRNIDILLIDD 61 Query: 116 IDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 I + + + FH N++++ + +++++ P L SR + + + Sbjct: 62 IQFIAGKERTQEEFFHTFNTLYEANKQIIISSDRTPKEIEFLESRLRSRFEWGLIADLQP 121 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232 PD + ++ K I ID + +I + + ++ E ++++ + I Sbjct: 122 PDLETRIAILKKKAEMENITIDSNVLQFIAETIISNIRELEGALNRIIAFSSLSNETINL 181 Query: 233 SLAAEVLKET 242 L E LK+T Sbjct: 182 ELTEEALKDT 191 >gi|53804309|ref|YP_114074.1| DnaA domain-containing protein [Methylococcus capsulatus str. Bath] gi|53758070|gb|AAU92361.1| DnaA domain protein [Methylococcus capsulatus str. Bath] Length = 334 Score = 85.2 bits (210), Expect = 8e-15, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 84/228 (36%), Gaps = 29/228 (12%) Query: 35 CLGISRDDLLVHSAIEQA-VRLIDSWPS-WPSRV-VILVGPSGSGKSCLANIWSD----- 86 + + + +A + + P+ V +++ G +G GK+ L + Sbjct: 7 NPSFRFSNFIEARSNNKAGTAALRVARNLGPASVPMVIWGAAGLGKTHLLQAIGNERLRL 66 Query: 87 --------KSRSTRFSNIAKSLDSILI-------DTRKPVLLEDIDLLDF---NDTQLFH 128 +S +++A +L + ++ +L +D+ L +L Sbjct: 67 NPAARIVYQSGDGFEADLAAALQQGAVAGFRSRYESADLLLFDDVQRLAGKVRAQAELVW 126 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 + +++ + S+++ P DL +RL V I PD + V+++ Sbjct: 127 LFDALLESLRSIVLAGDRSPYDMTGVAGDLKTRLNLGLSVSIEPPDLETRAAVLMQKART 186 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236 I + ++A ++ +R+ L E+ + LA IT AA Sbjct: 187 WGIDLPPEVAFFLGRRIRTDLAELER---ALLRLAACARQPITLETAA 231 >gi|146337176|ref|YP_001202224.1| chromosomal replication initiation protein [Bradyrhizobium sp. ORS278] gi|166201862|sp|A4YJ98|DNAA_BRASO RecName: Full=Chromosomal replication initiator protein DnaA gi|146189982|emb|CAL73974.1| Chromosomal replication initiator protein dnaA [Bradyrhizobium sp. ORS278] Length = 476 Score = 85.2 bits (210), Expect = 8e-15, Method: Composition-based stats. Identities = 29/245 (11%), Positives = 77/245 (31%), Gaps = 32/245 (13%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWP------SRVVILVGPSGSGKSCLANI--W 84 P ++ +V A A + + G GK+ L W Sbjct: 133 PLDPRLTFASFVVGRANTLAHAAARQVADGRRGDPVMFNPLYIHAGVGLGKTHLLQAVTW 192 Query: 85 SDKSRSTR-------------FSNIAKSLDSIL----IDTRKPVLLEDIDLLDF--NDTQ 125 + + R F KS ++ + ++++D+ L + Sbjct: 193 AGNAGGERKVLYLTAEKFMYGFVAALKSQTALAFKEALRGIDVLVIDDLQFLQGKSTQAE 252 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK- 184 H +N++ +++ A P + SRL VV+++ +D ++ Sbjct: 253 FCHTLNALIDAGRQVVIAADRPPSDLESLDDRVRSRLAGGLVVEMATLGEDLRLGILKSR 312 Query: 185 ----MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + + Y+ + + + E ++++ + +T +A ++ Sbjct: 313 VAAARAHHASFDVPEAVLDYLARSITHNGRDLEGAINRLLAHSKLNNQPVTLDMAEREVR 372 Query: 241 ETQQC 245 + + Sbjct: 373 DLVRP 377 >gi|322392425|ref|ZP_08065885.1| DNA-directed DNA replication initiator protein [Streptococcus peroris ATCC 700780] gi|321144417|gb|EFX39818.1| DNA-directed DNA replication initiator protein [Streptococcus peroris ATCC 700780] Length = 452 Score = 84.8 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 34/236 (14%), Positives = 79/236 (33%), Gaps = 30/236 (12%) Query: 38 ISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK------ 87 + D+ + A+ + + + + G G GK+ L N ++ Sbjct: 118 YTFDNFVQGDGNIWAKSAALAVSEDLAL-TYNPLFIYGGPGLGKTHLLNAIGNEILKNIP 176 Query: 88 SRSTRFSNIAKSLDSILIDTR--------------KPVLLEDIDLLDF----NDTQLFHI 129 S ++ ++ L R +L++DI L + F+ Sbjct: 177 SARVKYIPAESFINDFLDHLRLGEMEKFKKTYRNLDLLLIDDIQSLSGKKVATQEEFFNT 236 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N +H +++T+ P L +R I+ PD + ++ + Sbjct: 237 FNDLHNKQKQIVLTSDRSPKQLEGMEERLVTRFSWGLTQAITPPDFETRVAILQSKTENL 296 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITRSLAAEVLKETQQ 244 Y+ + + ++ E ++ + +A + IT +AAE ++ +Q Sbjct: 297 DYNFQSDTLEYLAGQFDSNVRELEGAINDITLIARVKKITDITIDIAAEAIRARKQ 352 >gi|330721534|gb|EGG99570.1| Chromosomal replication initiator protein DnaA [gamma proteobacterium IMCC2047] Length = 91 Score = 84.8 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 47/90 (52%) Query: 151 WGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 V LPDL +RL + V ++ D+ +++ ++ + + + A YI+ R ERS+ Sbjct: 1 MAVQLPDLLTRLASCAVFQVKTLSDEGKVRLLCDRADEKGVELPVESAQYILNRSERSIG 60 Query: 211 FAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 +++D++D +LS G +T E ++ Sbjct: 61 RLLEILDRLDQSSLSAGRKLTIPFIKETMR 90 >gi|91974483|ref|YP_567142.1| chromosomal replication initiation protein [Rhodopseudomonas palustris BisB5] gi|123722287|sp|Q13F98|DNAA_RHOPS RecName: Full=Chromosomal replication initiator protein DnaA gi|91680939|gb|ABE37241.1| chromosomal replication initiator protein DnaA [Rhodopseudomonas palustris BisB5] Length = 472 Score = 84.8 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 30/245 (12%), Positives = 80/245 (32%), Gaps = 32/245 (13%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWP------SRVVILVGPSGSGKSCLANI--W 84 P ++ +V + A + + G GK+ L W Sbjct: 129 PLDPRLTFASFVVGRSNTLAHAAAKQVAEGRRGDPVMFNPLYIHSGVGLGKTHLLQAVTW 188 Query: 85 SDKSRSTR-------------FSNIAKSLDSIL----IDTRKPVLLEDIDLLDF--NDTQ 125 + S + R F K+ S+ + ++++D+ L + Sbjct: 189 AGNSGTERKVLYLTAEKFMYGFVASLKTQTSLAFKEALRGIDVLVIDDLQFLQGKTTQAE 248 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 H +N++ +++ A P + SRL VV+++ ++ ++ Sbjct: 249 FCHTLNALIDAGRQVVVAADRPPADLESLDERVRSRLAGGLVVEMAPLGEELRLGILKSR 308 Query: 186 -FADR----QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 A R + + + Y+ + + + E ++++ + +T +A ++ Sbjct: 309 VVAARTHHASFDVPQSVLEYLARAITHNGRDLEGAINRLLAHSKLNAQPVTLEMAEHEVR 368 Query: 241 ETQQC 245 + + Sbjct: 369 DLIRP 373 >gi|27375941|ref|NP_767470.1| chromosomal replication initiation protein [Bradyrhizobium japonicum USDA 110] gi|38257550|sp|Q89W63|DNAA_BRAJA RecName: Full=Chromosomal replication initiator protein DnaA gi|27349079|dbj|BAC46095.1| chromosomal replication initiator protein [Bradyrhizobium japonicum USDA 110] Length = 470 Score = 84.8 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 25/245 (10%), Positives = 78/245 (31%), Gaps = 32/245 (13%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWP------SRVVILVGPSGSGKSCLANI--W 84 P ++ ++ + A + + G GK+ L W Sbjct: 127 PLDPRLTFASFVIGRSNTLAHAAARQVAEGRRGDPVMFNPLYIHAGVGLGKTHLLQAVTW 186 Query: 85 SDKSRSTR--------------FSNIAKSLDSILIDTRKPV---LLEDIDLLDF--NDTQ 125 + S + R + + + + + +++D+ L + Sbjct: 187 AGNSGNERKVLYLTAEKFMYGFVAALKTQTALAFKEALRGIDVLVIDDLQFLQGKSTQAE 246 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 H +N++ +++ A P + SRL VV++ ++ ++ Sbjct: 247 FCHTLNALIDAGRQVVIAADRPPSDLESLDDRVRSRLAGGLVVEMGSLGEELRHGILKSR 306 Query: 186 FADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 A + + +++ Y+ + + + E ++++ + +T +A ++ Sbjct: 307 VAAARAHHATFDVPEEVLHYLARTITHNGRDLEGAINRLLAHSKLNNQPVTLEMAEREVR 366 Query: 241 ETQQC 245 + + Sbjct: 367 DLVRP 371 >gi|121587284|ref|ZP_01677057.1| chromosomal replication initiator protein DnaA [Vibrio cholerae 2740-80] gi|121548530|gb|EAX58586.1| chromosomal replication initiator protein DnaA [Vibrio cholerae 2740-80] Length = 213 Score = 84.4 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 51/112 (45%) Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N++ + + +++T+ +P L SR V I P+ + +++K D Q Sbjct: 1 NALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKAEDHQ 60 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 I + ++A +I +R+ ++ E ++++ A G IT E L++ Sbjct: 61 IHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDL 112 >gi|75674200|ref|YP_316621.1| chromosomal replication initiation protein [Nitrobacter winogradskyi Nb-255] gi|123773117|sp|Q3SMV0|DNAA_NITWN RecName: Full=Chromosomal replication initiator protein DnaA gi|74419070|gb|ABA03269.1| chromosomal replication initiator protein, DnaA [Nitrobacter winogradskyi Nb-255] Length = 475 Score = 84.4 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 25/245 (10%), Positives = 78/245 (31%), Gaps = 32/245 (13%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWP------SRVVILVGPSGSGKSCLANI--W 84 P ++ + + A + + G GK+ L W Sbjct: 132 PLDPRLTFQSFVTGRSNTLAHAAARQVAEGRRGDSVMFNPLYIHAGVGLGKTHLLQAVTW 191 Query: 85 SDKSRSTR-------------FSNIAKSLDSIL----IDTRKPVLLEDIDLLDF--NDTQ 125 + + + R F K+ ++ + ++++D+ L + Sbjct: 192 AGNAGTERRVLYLTAEKFMYGFVAALKTQTALAFKEALRGIDVLVIDDLQFLQGKSTQAE 251 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 H +N++ +++ A P + SRL VV++ ++ ++ Sbjct: 252 FCHTLNALIDAGRQVVIAADRPPSDLESLDDRVRSRLAGGLVVEMGSLGEELRLGILRSR 311 Query: 186 FADRQIF-----IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 ++ + + + Y+ + + + E ++++ + +T +A ++ Sbjct: 312 VEAARVHHASFDVPEPVLDYLAKAITHNGRDLEGAINRLLAHSKLNAQPVTLEMAEREVR 371 Query: 241 ETQQC 245 + + Sbjct: 372 DLVRP 376 >gi|330444376|ref|YP_004377362.1| chromosomal replication initiator protein DnaA [Chlamydophila pecorum E58] gi|328807486|gb|AEB41659.1| chromosomal replication initiator protein DnaA [Chlamydophila pecorum E58] Length = 450 Score = 84.4 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 45/257 (17%), Positives = 94/257 (36%), Gaps = 39/257 (15%) Query: 16 QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQ---AVRLIDSWPSWPSRVVILVGP 72 ++ + KE QL + D+ + S+ + A I P + + G Sbjct: 102 AESPAEETKEFQLKLN----SSYRFDNFIEGSSNQFVKSAAVGIAGKPGRSYNPLFIHGG 157 Query: 73 SGSGKSCLANIWSDKSRSTR-------------FSNIAKSLDSILID-------TRKPVL 112 G GK+ L + R +++ L S ID + +L Sbjct: 158 VGLGKTHLLHAIGHYVREHHKNLKIHCITTEAFINDLVYHLKSKSIDKMKNFYRSLDLLL 217 Query: 113 LEDI----DLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 ++DI + +F + +IN Q +++T+ P + + +R++ Sbjct: 218 VDDIQFLQNRQNFEEEFCNTFETLINFSKQ----IVITSDKPPGQLKLS-ERIIARMEWG 272 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 V + +PD + ++ + + I ++A YI + ++ E ++K+ Sbjct: 273 LVAHVGIPDLETRVAILQHKAEQKGLVIPNEVAFYIADHIYGNVRQLEGAINKLTAYCRL 332 Query: 226 RGMGITRSLAAEVLKET 242 G GIT + + LKE Sbjct: 333 FGKGITENTVHDTLKEL 349 >gi|237751287|ref|ZP_04581767.1| chromosomal replication initiator protein dnaA [Helicobacter bilis ATCC 43879] gi|229372653|gb|EEO23044.1| chromosomal replication initiator protein dnaA [Helicobacter bilis ATCC 43879] Length = 440 Score = 84.4 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 82/232 (35%), Gaps = 29/232 (12%) Query: 39 SRDDLLVHSAIEQAVR----LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS-----R 89 S + +V + A + + W +++ G +G GK+ L + Sbjct: 108 SFNSFIVGECNKFAFETAKEIAKNQGKW--NPLLIYGNTGLGKTHLLYAICNAVYERTPN 165 Query: 90 STRFSNIAKSLDSIL---------------IDTRKPVLLEDIDLLDFND---TQLFHIIN 131 + A+S+ + + +L++D+ L D + F+ N Sbjct: 166 AKIVYITAESMFNEYRHRIQNNTMQHFRERFRSCDYLLIDDVQFLSNTDKFQEEFFNTFN 225 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 I Q ++MT+ P L SR + KI P+ D +I + A I Sbjct: 226 VIVQEGGQIVMTSDKAPKLIDKLEKRLKSRFAGGMMTKIESPELDMKINIIKQKCALNNI 285 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 ++ + +I ++ ++ E + + + IT + +LK+ + Sbjct: 286 TLEPNIINFIATQLHDNIREIEGTIIDIYANMSIMNIPITLEIVKNILKDRE 337 >gi|217076354|ref|YP_002334070.1| chromosomal replication initiator protein DnaA [Thermosipho africanus TCF52B] gi|226735858|sp|B7IF65|DNAA_THEAB RecName: Full=Chromosomal replication initiator protein DnaA gi|217036207|gb|ACJ74729.1| chromosomal replication initiator protein DnaA [Thermosipho africanus TCF52B] Length = 438 Score = 84.4 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 33/199 (16%), Positives = 69/199 (34%), Gaps = 34/199 (17%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS--RVVILVGPSGSGKSCLANI------- 83 P + ++ +V + A + P + L G GK+ LA Sbjct: 99 PLNPKYTFENFVVGNFNRFAYNVFLEASKKPGYYNPIFLYSGVGLGKTHLAQALGNFLLE 158 Query: 84 --------------WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID---LLDFNDTQL 126 + ++ + + ++++DI + +L Sbjct: 159 NDPDLKVAYLTSEDFMNEMFYAIKNGTTEEFREKYRKKADILIIDDIQFLIGIKSAQVEL 218 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL----KAATVVKISLPDDDFLEKVI 182 FH N+IH+ +++ + P L D SR+ + +VKI P + L K+ Sbjct: 219 FHTFNAIHEAGKQIIICSDRTPQE----LKDFHSRMISRFQMGLLVKIENPTKEDLFKIG 274 Query: 183 VKMFADRQIFIDKKLAAYI 201 K+ + + I+ ++ YI Sbjct: 275 KKISKLKGVEINDEIIDYI 293 >gi|307294072|ref|ZP_07573916.1| chromosomal replication initiator protein DnaA [Sphingobium chlorophenolicum L-1] gi|306880223|gb|EFN11440.1| chromosomal replication initiator protein DnaA [Sphingobium chlorophenolicum L-1] Length = 470 Score = 84.4 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 32/239 (13%), Positives = 70/239 (29%), Gaps = 27/239 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91 D + A + + + G +G GK+ L + + S Sbjct: 135 QPRHGFDGFVTGETNHLAFSAAQAMAGEGQPRFSPLFIHGGTGQGKTHLLHAIARLFSSH 194 Query: 92 RFSNIAKSLDS--------------------ILIDTRKPVLLEDIDLLDF---NDTQLFH 128 S + + + + +L++DI + + H Sbjct: 195 SPSAPVLYMSAERFMMEFVNAMRANETMMFKARLRAARLLLIDDIQFIAGKGSTQEEFLH 254 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 IN + + + +TA P P + SRL V I D ++ A Sbjct: 255 TINDLIDSGARIAITADRAPQMLDAIDPRILSRLAGGLVADIRPAGLDLRLAILEAKRAI 314 Query: 189 RQ-IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + + ++ + + ++ E +K+ G I A +L + + + Sbjct: 315 AGDPPVPDAVVDFLARSIRSNVRELEGAFNKLIAYGQLTGRSIDLEFAQAMLADAVRAN 373 >gi|15805044|ref|NP_293728.1| chromosomal replication initiation protein [Deinococcus radiodurans R1] gi|6457661|gb|AAF09596.1|AE001864_2 chromosomal replication initiator protein [Deinococcus radiodurans R1] Length = 454 Score = 84.0 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 33/237 (13%), Positives = 89/237 (37%), Gaps = 26/237 (10%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI----WSDK 87 + ++ +V A + P + + + G G GK+ L + +++ Sbjct: 112 NPKYTFENFVVGPNNNLAHAAALAVAESPGKAYNPLFIYGDVGLGKTHLMHAVGHYLAER 171 Query: 88 SRSTRFSNIA-KSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 R ++ ++ + LI+ + +L++DI L + + FH Sbjct: 172 FPEKRIEYVSTETFTNELINAIRDDKTTQFRNRYRSVDLLLVDDIQFLAGKERTQEEFFH 231 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++++ + +++++ P L SR + + I P+ + ++ Sbjct: 232 TFNALYESNKQIILSSDRPPKDIQTLEGRLRSRFEWGLITDIQSPEYETRVAILKMNAEQ 291 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 I I +++ I +++ ++ E + ++ A + +R+ AA+ L Sbjct: 292 GHITIPQEVLELIARQVTSNIRELEGALMRVVAFASLNNVPFSRAAAAKALSNVFAP 348 >gi|984962|gb|AAA85543.1| dnaA [Mycobacterium tuberculosis] Length = 260 Score = 84.0 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 27/191 (14%), Positives = 70/191 (36%), Gaps = 25/191 (13%) Query: 76 GKSCLANIWSDKSRSTRFSNI---AKSLDSILIDTRKP------------------VLLE 114 GK+ L + + F + S + D +L++ Sbjct: 1 GKTHLLHA-AGNYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVD 59 Query: 115 DIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 DI ++ + + FH N++H + +++++ P L +R + + + Sbjct: 60 DIQFIEGKEGIQEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQ 119 Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231 P+ + ++ K ++ + + I + +E ++ E + ++ A I Sbjct: 120 PPELETRIAILRKKAQMERLXVPDDVLELIARXIEXNIXVLEGALIRVTPFASLNKTPID 179 Query: 232 RSLAAEVLKET 242 ++LA VL++ Sbjct: 180 KALAEIVLRDL 190 >gi|83308727|emb|CAJ01637.1| putative chromosomal replication initiator protein dnaA [Methylocapsa acidiphila] Length = 508 Score = 84.0 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 37/247 (14%), Positives = 79/247 (31%), Gaps = 34/247 (13%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDS----WPSWP--SRVVILVGPSGSGKSCLANIWSD 86 P ++ + LV + + A P P + L G GK+ L + Sbjct: 166 PLDRRLNFSNFLVGKSNQLAHAAAQRVASTEPGEPLTYNPLYLHASVGLGKTHLLQAVAH 225 Query: 87 KSRSTRFSNIAKSLDSIL------------------IDTRKPVLLEDIDLLDFN--DTQL 126 + I + + + + ++++DI L + Sbjct: 226 AASDVTRRVIYLTAEKFMYGFVSALKAQTAIAFKERLRGIDVLVIDDIQFLQGKSIQQEF 285 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 H +N++ +++ A P + SRL V++ D+ K++ Sbjct: 286 CHTLNALIDARRQIVIAADRPPGDLESLDERVRSRLAGGLCVEMGGLDEALRVKILETRI 345 Query: 187 ADRQIF-----IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI---TRSLAAEV 238 A Q + + AY+ ++ + + V+++ A G + T LA Sbjct: 346 AAAQAVHSNFDVPPAVIAYVASVIQTNGRDLDGAVNRLLAHASLSGAPLGVETAELAIRD 405 Query: 239 LKETQQC 245 L T + Sbjct: 406 LVRTHEP 412 >gi|330831850|ref|YP_004400675.1| chromosomal replication initiator protein [Streptococcus suis ST3] gi|329306073|gb|AEB80489.1| chromosomal replication initiator protein [Streptococcus suis ST3] Length = 457 Score = 84.0 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 34/242 (14%), Positives = 87/242 (35%), Gaps = 33/242 (13%) Query: 35 CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW-----S 85 + + + A+ + D+ + + G G GK+ + N + Sbjct: 121 KSQYTFANFVQGDNNHWAKAAALAVSDNLGE-LYNPLFIFGGPGLGKTHILNAIGNKFLA 179 Query: 86 DKSRSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLL---DFNDTQLF 127 D ++ +++ + ++ +L++DI L + F Sbjct: 180 DNPQARIKYVSSETFINEFLEHLRLNDMESFKKTYRNLDLLLIDDIQSLRNKATTQEEFF 239 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++H+ + +++T+ P L +R K +I+ PD + ++ Sbjct: 240 HTFNALHEKNKQIVLTSDRNPDHLDNLEERLVTRFKWGLTSEITPPDFETRIAILRNKCE 299 Query: 188 DRQIFIDKKLAAYIVQRME---RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 + + +Y+ + + R L A K + + + + I+ +AAE ++ +Q Sbjct: 300 NLPYNFTNETLSYLAGQFDSNVRDLEGALKDIHLI--ATMRQLSEISVEVAAEAIRSRKQ 357 Query: 245 CD 246 + Sbjct: 358 TN 359 >gi|253754648|ref|YP_003027788.1| chromosomal replication initiator protein [Streptococcus suis BM407] gi|251817112|emb|CAZ54833.1| chromosomal replication initiator protein [Streptococcus suis BM407] Length = 444 Score = 84.0 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 34/242 (14%), Positives = 87/242 (35%), Gaps = 33/242 (13%) Query: 35 CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW-----S 85 + + + A+ + D+ + + G G GK+ + N + Sbjct: 108 KSQYTFANFVQGDNNHWAKAAALAVSDNLGE-LYNPLFIFGGPGLGKTHILNAIGNKVLA 166 Query: 86 DKSRSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLL---DFNDTQLF 127 D ++ +++ + ++ +L++DI L + F Sbjct: 167 DNPQARIKYVSSETFINEFLEHLRLNDMESFKKTYRNLDLLLIDDIQSLRNKATTQEEFF 226 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++H+ + +++T+ P L +R K +I+ PD + ++ Sbjct: 227 HTFNALHEKNKQIVLTSDRNPDHLDNLEERLVTRFKWGLTSEITPPDFETRIAILRNKCE 286 Query: 188 DRQIFIDKKLAAYIVQRME---RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 + + +Y+ + + R L A K + + + + I+ +AAE ++ +Q Sbjct: 287 NLPYNFTNETLSYLAGQFDSNVRDLEGALKDIHLI--ATMRQLSEISVEVAAEAIRSRKQ 344 Query: 245 CD 246 + Sbjct: 345 TN 346 >gi|146319849|ref|YP_001197375.1| chromosomal replication initiation protein [Streptococcus suis 05ZYH33] gi|146322039|ref|YP_001199561.1| chromosomal replication initiation protein [Streptococcus suis 98HAH33] gi|253750924|ref|YP_003024065.1| chromosomal replication initiator protein [Streptococcus suis SC84] gi|253752823|ref|YP_003025963.1| chromosomal replication initiator protein [Streptococcus suis P1/7] gi|145690655|gb|ABP91161.1| ATPase involved in DNA replication initiation [Streptococcus suis 05ZYH33] gi|145692845|gb|ABP93350.1| ATPase involved in DNA replication initiation [Streptococcus suis 98HAH33] gi|251815213|emb|CAZ50777.1| chromosomal replication initiator protein [Streptococcus suis SC84] gi|251819068|emb|CAR44080.1| chromosomal replication initiator protein [Streptococcus suis P1/7] gi|292557465|gb|ADE30466.1| chromosomal replication initiator protein, DnaA [Streptococcus suis GZ1] gi|319757173|gb|ADV69115.1| chromosomal replication initiator protein [Streptococcus suis JS14] Length = 457 Score = 84.0 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 34/242 (14%), Positives = 87/242 (35%), Gaps = 33/242 (13%) Query: 35 CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW-----S 85 + + + A+ + D+ + + G G GK+ + N + Sbjct: 121 KSQYTFANFVQGDNNHWAKAAALAVSDNLGE-LYNPLFIFGGPGLGKTHILNAIGNKVLA 179 Query: 86 DKSRSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLL---DFNDTQLF 127 D ++ +++ + ++ +L++DI L + F Sbjct: 180 DNPQARIKYVSSETFINEFLEHLRLNDMESFKKTYRNLDLLLIDDIQSLRNKATTQEEFF 239 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++H+ + +++T+ P L +R K +I+ PD + ++ Sbjct: 240 HTFNALHEKNKQIVLTSDRNPDHLDNLEERLVTRFKWGLTSEITPPDFETRIAILRNKCE 299 Query: 188 DRQIFIDKKLAAYIVQRME---RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 + + +Y+ + + R L A K + + + + I+ +AAE ++ +Q Sbjct: 300 NLPYNFTNETLSYLAGQFDSNVRDLEGALKDIHLI--ATMRQLSEISVEVAAEAIRSRKQ 357 Query: 245 CD 246 + Sbjct: 358 TN 359 >gi|14194696|sp|Q9RYE7|DNAA_DEIRA RecName: Full=Chromosomal replication initiator protein DnaA Length = 466 Score = 84.0 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 33/237 (13%), Positives = 89/237 (37%), Gaps = 26/237 (10%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI----WSDK 87 + ++ +V A + P + + + G G GK+ L + +++ Sbjct: 124 NPKYTFENFVVGPNNNLAHAAALAVAESPGKAYNPLFIYGDVGLGKTHLMHAVGHYLAER 183 Query: 88 SRSTRFSNIA-KSLDSILIDTRK---------------PVLLEDIDLLDFND---TQLFH 128 R ++ ++ + LI+ + +L++DI L + + FH Sbjct: 184 FPEKRIEYVSTETFTNELINAIRDDKTTQFRNRYRSVDLLLVDDIQFLAGKERTQEEFFH 243 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N++++ + +++++ P L SR + + I P+ + ++ Sbjct: 244 TFNALYESNKQIILSSDRPPKDIQTLEGRLRSRFEWGLITDIQSPEYETRVAILKMNAEQ 303 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 I I +++ I +++ ++ E + ++ A + +R+ AA+ L Sbjct: 304 GHITIPQEVLELIARQVTSNIRELEGALMRVVAFASLNNVPFSRAAAAKALSNVFAP 360 >gi|223933958|ref|ZP_03625917.1| chromosomal replication initiator protein DnaA [Streptococcus suis 89/1591] gi|302023110|ref|ZP_07248321.1| chromosomal replication initiation protein [Streptococcus suis 05HAS68] gi|223897377|gb|EEF63779.1| chromosomal replication initiator protein DnaA [Streptococcus suis 89/1591] Length = 457 Score = 84.0 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 34/242 (14%), Positives = 87/242 (35%), Gaps = 33/242 (13%) Query: 35 CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW-----S 85 + + + A+ + D+ + + G G GK+ + N + Sbjct: 121 KSQYTFANFVQGDNNHWAKAAALAVSDNLGE-LYNPLFIFGGPGLGKTHILNAIGNKVLA 179 Query: 86 DKSRSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLL---DFNDTQLF 127 D ++ +++ + ++ +L++DI L + F Sbjct: 180 DNPQARIKYVSSETFINEFLEHLRLNDMESFKKTYRNLDLLLIDDIQSLRNKATTQEEFF 239 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H N++H+ + +++T+ P L +R K +I+ PD + ++ Sbjct: 240 HTFNALHEKNKQIVLTSDRNPDHLDNLEERLVTRFKWGLTSEITPPDFETRIAILRNKCE 299 Query: 188 DRQIFIDKKLAAYIVQRME---RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 + + +Y+ + + R L A K + + + + I+ +AAE ++ +Q Sbjct: 300 NLPYNFTNETLSYLAGQFDSNVRDLEGALKDIHLI--ATMRQLSEISVEVAAEAIRSRKQ 357 Query: 245 CD 246 + Sbjct: 358 TN 359 >gi|92115634|ref|YP_575363.1| chromosomal replication initiation protein [Nitrobacter hamburgensis X14] gi|122990363|sp|Q1QS94|DNAA_NITHX RecName: Full=Chromosomal replication initiator protein DnaA gi|91798528|gb|ABE60903.1| chromosomal replication initiator protein DnaA [Nitrobacter hamburgensis X14] Length = 475 Score = 84.0 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 24/246 (9%), Positives = 73/246 (29%), Gaps = 34/246 (13%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWP------SRVVILVGPSGSGKSCLANI--W 84 P ++ + + A + + G GK+ L W Sbjct: 132 PLDPRLTFASFVTGRSNTLAHAAARQVAEGRRGDSIMFNPLYIHAGVGLGKTHLLQAVTW 191 Query: 85 SDKSR------------------STRFSNIAKSLDSILIDTRKPVLLEDIDLLDF--NDT 124 + + + S A + + ++++D+ L Sbjct: 192 AGNAGTERKVLYLTAEKFMYGFVAALKSQTALAFKEA-LRGIDVLVIDDLQFLQGKSTQA 250 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + H +N++ +++ A P + SRL VV++ ++ ++ Sbjct: 251 EFCHTLNALIDAGRQVVVAADRPPSDLESLDDRVRSRLAGGLVVEMGSLGEELRLGILKS 310 Query: 185 -----MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + + + Y+ + + + E ++++ + +T +A + Sbjct: 311 RIEVARAHHASFSVPEPVLDYLAKAITHNGRDLEGAINRLLAHSKLNAQPVTLEMAEREV 370 Query: 240 KETQQC 245 ++ + Sbjct: 371 RDLIRP 376 >gi|86747128|ref|YP_483624.1| chromosomal replication initiation protein [Rhodopseudomonas palustris HaA2] gi|123004838|sp|Q2J497|DNAA_RHOP2 RecName: Full=Chromosomal replication initiator protein DnaA gi|86570156|gb|ABD04713.1| chromosomal replication initiator protein DnaA [Rhodopseudomonas palustris HaA2] Length = 472 Score = 84.0 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 28/245 (11%), Positives = 76/245 (31%), Gaps = 32/245 (13%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWP------SRVVILVGPSGSGKSCLANI--W 84 P ++ +V + A + + G GK+ L W Sbjct: 129 PLDPRLTFASFVVGRSNTLAHAAAKQVAEGRRGDPVMFNPLYIHSGVGLGKTHLLQAVTW 188 Query: 85 SDKSRSTR-------------FSNIAKSLDSIL----IDTRKPVLLEDIDLLDF--NDTQ 125 + + R F K+ S+ + ++++D+ L + Sbjct: 189 AGNTGIERKVLYLTAEKFMYGFVAALKTQTSLAFKEALRGIDVLVIDDLQFLQGKTTQAE 248 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK- 184 H +N++ +++ A P + SRL VV+++ +D ++ Sbjct: 249 FCHTLNALIDAGRQVVVAADRPPSDLESLDERVRSRLAGGLVVEMAPLGEDLRLGILKSR 308 Query: 185 ----MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + Y+ + + + E ++++ + +T +A ++ Sbjct: 309 VVAARAHHASFDVPAPVLEYLARAITHNGRDLEGAINRLLAHSKLNAQPVTLEMAEHEVR 368 Query: 241 ETQQC 245 + + Sbjct: 369 DLIRP 373 >gi|115522031|ref|YP_778942.1| chromosomal replication initiation protein [Rhodopseudomonas palustris BisA53] gi|122298220|sp|Q07VS2|DNAA_RHOP5 RecName: Full=Chromosomal replication initiator protein DnaA gi|115515978|gb|ABJ03962.1| chromosomal replication initiator protein DnaA [Rhodopseudomonas palustris BisA53] Length = 474 Score = 84.0 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 26/246 (10%), Positives = 73/246 (29%), Gaps = 34/246 (13%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWP------SRVVILVGPSGSGKSCLANI--W 84 P ++ +V + A + + G GK+ L W Sbjct: 131 PLDPRLTFSSFVVGRSNTLAHAAAKQVAEGRRGDPVMFNPLYIHSGVGLGKTHLLQAVTW 190 Query: 85 SDKSR------------------STRFSNIAKSLDSILIDTRKPVLLEDIDLLDF--NDT 124 + S + S A + + ++++D+ L Sbjct: 191 AGNSGLERKVLYLTAEKFMYGFVAALKSQTALAFKEA-LRGIDVLVIDDLQFLQGKTTQA 249 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + H +N++ +++ A P + SRL VV+++ ++ ++ Sbjct: 250 EFCHTLNALIDAGRQVVIAADRPPSDLESLDERVRSRLAGGLVVEMASLGEELRLGILKS 309 Query: 185 -----MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + + Y+ + + E ++++ + +T +A + Sbjct: 310 RVTAARAHHASFEVPLPVLEYLAHSITHNGRDLEGAINRLLAHSKLNAQPVTLEMAEREV 369 Query: 240 KETQQC 245 ++ + Sbjct: 370 RDLIRP 375 >gi|294010810|ref|YP_003544270.1| chromosomal replication initiator protein DnaA [Sphingobium japonicum UT26S] gi|292674140|dbj|BAI95658.1| chromosomal replication initiator protein DnaA [Sphingobium japonicum UT26S] Length = 469 Score = 84.0 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 32/259 (12%), Positives = 75/259 (28%), Gaps = 27/259 (10%) Query: 15 KQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVG 71 + + + L + D + A + + + G Sbjct: 114 QAEETVADDGAADLPPASNFQPRHGFDGFVTGETNHLAYSAAQAMAGEAQPRFSPLFIHG 173 Query: 72 PSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKPV 111 +G GK+ L + + S S + + + + + Sbjct: 174 GTGQGKTHLLHAIARLFSSHSPSAPVLYMSAERFMMEFVNAMRANETMMFKARLRAARLL 233 Query: 112 LLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168 L++DI + + H IN + + +++TA P + SRL V Sbjct: 234 LIDDIQFIAGKGSTQEEFLHTINDLIDSGARIVVTADRAPQMLDAIDARILSRLAGGLVA 293 Query: 169 KISLPDDDFLEKVIVKMFADRQ-IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 I D ++ A + + ++ + + ++ E +K+ G Sbjct: 294 DIRPAGLDLRLAILEAKRAIAGDPPVPDAVVDFLARSIRSNVRELEGAFNKLIAYGQLTG 353 Query: 228 MGITRSLAAEVLKETQQCD 246 I A +L + + + Sbjct: 354 RSIDLEFAQAMLADAVRAN 372 >gi|242280649|ref|YP_002992778.1| chromosomal replication initiator DnaA [Desulfovibrio salexigens DSM 2638] gi|242123543|gb|ACS81239.1| Chromosomal replication initiator DnaA [Desulfovibrio salexigens DSM 2638] Length = 453 Score = 84.0 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 45/273 (16%), Positives = 86/273 (31%), Gaps = 46/273 (16%) Query: 17 KNDQPKN---KEEQLFFSFPR-----------CLGISRDDLLVHSAIEQAVR----LIDS 58 K D+P+ + Q P S DD ++ + A L D+ Sbjct: 87 KVDRPRPAAARPVQASMGLPMMSSAVVNTRIPRWRFSFDDFVIGESNRLACAASRSLCDN 146 Query: 59 WPSWPSRVVILVGPSGSGKSCLANIW----SDKSRSTRFSNIAKSLDS------------ 102 S P + + G GK+ L + S S + + Sbjct: 147 --SLPGDQLFMSSAPGLGKTHLLHSIGKNLCASSNKKNISIACLTAEEFANRMVLALKAG 204 Query: 103 -------ILIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 D +LLEDI ++ + S+ S ++MT+ P Sbjct: 205 EISRFKSEFRDNVDCLLLEDIHFFQGKQKMQDEILETLKSLQLRGSKVVMTSSFLPRELD 264 Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 P L SR + + IS PD + ++++ + ++ + R+ + Sbjct: 265 KVDPQLVSRFSSGLLALISTPDFETRKRIVESKAIRLGTQVPDSISELLADRITTDVRQL 324 Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 E + + A +++ LA +VL+ Sbjct: 325 ESCLQNLVLKARLLNRDVSQELAWQVLENYSIA 357 >gi|187734518|ref|YP_001876630.1| chromosomal replication initiator protein DnaA [Akkermansia muciniphila ATCC BAA-835] gi|187424570|gb|ACD03849.1| chromosomal replication initiator protein DnaA [Akkermansia muciniphila ATCC BAA-835] Length = 468 Score = 84.0 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 29/208 (13%), Positives = 76/208 (36%), Gaps = 29/208 (13%) Query: 38 ISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW------SDKS 88 + D +V+ A + + + L G SG GK+ L D S Sbjct: 133 YTFDSFVVYEDSRFAYQAGLSVAQSERALFNPLFLYGKSGVGKTHLLQAIGHEVLHQDSS 192 Query: 89 RSTRFSNIAKSLDSILIDTR-----------------KPVLLEDIDLLDFND---TQLFH 128 + + + + + +R +L++D+ + + + H Sbjct: 193 TNVVYVTGEQFANEFIDASRTQNGQSFTKLRRKYRKADVLLVDDVQFISGKEKTVEEFLH 252 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 + + ++++ A P L +RL++ V+++LPDD+ +++ Sbjct: 253 TFDELFHAHKTIVICADAAACDISNLDPRLAARLESGLTVELNLPDDNARLEILRSKRDR 312 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLV 216 + + ++ ++ R+++S+ E + Sbjct: 313 AGMNVSDEILEFLASRIQKSVRRLEGAL 340 >gi|154248706|ref|YP_001409531.1| chromosomal replication initiator protein DnaA [Fervidobacterium nodosum Rt17-B1] gi|154152642|gb|ABS59874.1| chromosomal replication initiator protein DnaA [Fervidobacterium nodosum Rt17-B1] Length = 444 Score = 83.7 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 32/243 (13%), Positives = 80/243 (32%), Gaps = 31/243 (12%) Query: 8 YSFFVPDKQK-----NDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPS- 61 Y QK ND ++ P + + +V + A ++ Sbjct: 73 YEIVYAQVQKDEVANNDNGALVRKRPVLITPVSSRYTFSNFVVEEFNQLAYTILLESAKK 132 Query: 62 -WPSRVVILVGPSGSGKSCLANIW---------------------SDKSRSTRFSNIAKS 99 + + +G GK+ L + ++ + + + Sbjct: 133 LGTFNPIFIYSKAGMGKTHLVQAFGNYLLENDPDIRFAYLTSEAFMNELIAKLKAGTVEE 192 Query: 100 LDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156 ++++DI L +LFH N++++ +++ + P Sbjct: 193 FREKYRKKVDVLVIDDIQFLAGKKGVQIELFHTFNTLYEAGKQIIVCSDRSPKELKDFQD 252 Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216 + SR + VV+I P + + ++ K+ D + I + Y+ + + S+ + + Sbjct: 253 RVISRFQMGVVVEIKNPSVEAMYRIAKKIVEDEKADISDDILNYVAKHFKGSIRILKGAI 312 Query: 217 DKM 219 K+ Sbjct: 313 IKL 315 >gi|116510844|ref|YP_808060.1| chromosomal replication initiation protein [Lactococcus lactis subsp. cremoris SK11] gi|125622883|ref|YP_001031366.1| chromosomal replication initiation protein [Lactococcus lactis subsp. cremoris MG1363] gi|123320723|sp|Q033I4|DNAA_LACLS RecName: Full=Chromosomal replication initiator protein DnaA gi|166214677|sp|A2RH74|DNAA_LACLM RecName: Full=Chromosomal replication initiator protein DnaA gi|116106498|gb|ABJ71638.1| ATPase for DNA replication initiation [Lactococcus lactis subsp. cremoris SK11] gi|124491691|emb|CAL96609.1| replication initiation protein DnaA [Lactococcus lactis subsp. cremoris MG1363] gi|300069621|gb|ADJ59021.1| chromosomal replication initiation protein [Lactococcus lactis subsp. cremoris NZ9000] Length = 454 Score = 83.7 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 32/280 (11%), Positives = 96/280 (34%), Gaps = 42/280 (15%) Query: 7 DYSFFVPDKQKNDQPKNKEEQLFFSFPRCLG-------------ISRDDLLVHSAI---- 49 DY + D+ + + + Q P + + ++ + Sbjct: 77 DYELYANDELTDIELRRLNNQSPVDEPLSVAKPTSPLVSGLNEKYNFENFVQGPGNRWTL 136 Query: 50 EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK-----SRSTRFSNIAKSLDSIL 104 A+ + D + + G +G GK+ L + ++ + +++ + Sbjct: 137 AAAIAVADKPGD-TYNPLFIYGGAGLGKTHLMHAIGNQILTDNPTARIKYVSSENFVNDY 195 Query: 105 IDTRKPVLLEDIDLL------------------DFNDTQLFHIINSIHQYDSSLLMTART 146 ++ + +E + + + F+ N+++ S +++T+ Sbjct: 196 VNATRKNQMESFENTYRNLDLLLLDDVQFFSDKEGTKNEFFNTFNALYDKGSQIVLTSDR 255 Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206 P L SR I+ PD + +++ + + +YI +++ Sbjct: 256 IPQELNNLEDRLVSRFSWGLTTDITAPDYETRMAILLIKSESSHLEFPSETLSYIAGQID 315 Query: 207 RSLVFAEKLVDKMDNLALSRGMGI-TRSLAAEVLKETQQC 245 ++ E +++++ +A + G+ I A++ L+ + Sbjct: 316 SNVRELEGALNRVEFVARANGISIVDIETASQALRSLKNA 355 >gi|226226817|ref|YP_002760923.1| bacterial DnaA family protein [Gemmatimonas aurantiaca T-27] gi|226090008|dbj|BAH38453.1| bacterial DnaA family protein [Gemmatimonas aurantiaca T-27] Length = 592 Score = 83.7 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 63/161 (39%), Gaps = 26/161 (16%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW------SDKS 88 +R+ L + + + A+R +D+ P R ++L GPSGSGKS + +D Sbjct: 389 FTRESLQISTGNQLALRAVDAVLEEPGRRYNPLLLHGPSGSGKSHTVHAIGNAMKQADGR 448 Query: 89 RSTRFSNIAKSLDSILID--------------TRKPVLLEDIDLLDFNDT---QLFHIIN 131 R+ + ++ + +L+DI L + +LFH+ N Sbjct: 449 RAVACLSAGTFVEEFVAAMQEGGVERWRARYRAADVFILDDIQELVGKERTQDELFHLFN 508 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 + S +++T+ P L SR + VV + Sbjct: 509 HLVNRGSQVVLTSDRIPRDLNGFADRLRSRFEGGLVVALPA 549 Score = 80.2 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 33/217 (15%), Positives = 76/217 (35%), Gaps = 29/217 (13%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTR- 92 + D +V + A + P + + + G SG GK+ L +++++ + Sbjct: 8 KLRFDTFVVGGSNRLAASAARAVADAPGQAYNPLFVYGESGRGKTHLVAAIANRAQENQP 67 Query: 93 --------FSNIAKSLDSILIDT-----------RKPVLLEDIDLLDFN---DTQLFHII 130 +A+ L + ++L+D+ L ++L ++ Sbjct: 68 DLRVLFSSGEEVAEHLHQSIASGQPQRFLEHYQQADLLILDDVQFLTGQRETQSELLRLL 127 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N + + L+ T+ P L SRL VV + PD + ++ + +R+ Sbjct: 128 NVLMRAGQQLVFTSDRQPADIPDVDQRLLSRLSGGLVVDVGSPDFEMRLAILRNVAVERR 187 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 + V R+ +L ++ L+ + Sbjct: 188 TDFASGVLD-EVARLP--FANVRELKGALNKLSAYQQ 221 >gi|301058134|ref|ZP_07199186.1| chromosomal replication initiator protein DnaA [delta proteobacterium NaphS2] gi|300447766|gb|EFK11479.1| chromosomal replication initiator protein DnaA [delta proteobacterium NaphS2] Length = 449 Score = 83.7 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 48/274 (17%), Positives = 98/274 (35%), Gaps = 42/274 (15%) Query: 7 DYSFFVPDKQKNDQPK---NKEEQLFFS----------FPRCLGISRDDLLVHSAIEQAV 53 D V +++ P +QL F + D +V + E A Sbjct: 72 DVQLKVQRRKRTPSPAAFAPHPDQLILPGMPEKKRKKNFLLNSQFTFDRFIVGQSNEFAF 131 Query: 54 RLIDSWPSWPS----RVVILVGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSIL 104 + +++L +G GK+ L+ I + RS F A+ + + Sbjct: 132 SASKNIALGDGCDYHSLLMLS-NTGLGKTHLSQAIGHSILAKNPRSRVFYMTAEDFTNEM 190 Query: 105 IDTRK----------------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTAR 145 I + + +LLE++ L + +L + ++++ Q ++ T+ Sbjct: 191 IASLRNRRIEAFKNRYRQSCDVLLLEEVHFLGGKEKIQAELGYTLDALAQDRKKIIFTSS 250 Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 P +L SRL + V I PD K++ + + + K + ++ R+ Sbjct: 251 LPPKDIPQMSKELSSRLTSGLVTTIGGPDYHTRIKILEEKAKGFNVVLSKDVVHFLANRL 310 Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 +R + E + + A G I LA +V+ Sbjct: 311 KRDVRQMESALKCLKARAELVGAKINMDLAKDVV 344 >gi|283777803|ref|YP_003368558.1| chromosomal replication initiator DnaA [Pirellula staleyi DSM 6068] gi|283436256|gb|ADB14698.1| Chromosomal replication initiator DnaA [Pirellula staleyi DSM 6068] Length = 570 Score = 83.7 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 34/241 (14%), Positives = 77/241 (31%), Gaps = 25/241 (10%) Query: 30 FSFPRCLGISRDDLLVHSAIEQAVRLIDS--WPSWPSRVVILVGPSGSGKSCLAN-IWSD 86 + R D + A+ S ++ GP G GK+ L IWS Sbjct: 222 LRWTRRPFARLDSFVEGDGNRIALSAAKSVLPRLGKMSPLVFSGPPGCGKTHLLEGIWSH 281 Query: 87 KSRSTRFSNI----AKSLDSILIDT---------------RKPVLLEDIDLLDFND---T 124 + + A+ + ++ + +L++DI T Sbjct: 282 ARHHSSLKRVVYLTAEQFTTHFVEALRGSGLPSFRKKYRDVELLLIDDIQFFAGKQSTLT 341 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 +L + I ++ + L++ A + D+ +RL V I D ++ + Sbjct: 342 ELLYTIETLLREGRQLVLAADRPLSQLRMLGADVVNRLGGGLVCTIDPADFGTRRGILER 401 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 + +R + + + ++ +E ++++ A +T A L + Sbjct: 402 LAIERSVVVPSDVLDWLAASLEGDARLLSGAMNRLAATAEMSQKALTLESAEAALSDLLG 461 Query: 245 C 245 Sbjct: 462 A 462 >gi|240849789|ref|YP_002971177.1| chromosomal replication initiator protein DnaA [Bartonella grahamii as4aup] gi|240266912|gb|ACS50500.1| chromosomal replication initiator protein DnaA [Bartonella grahamii as4aup] Length = 523 Score = 83.7 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 32/207 (15%), Positives = 64/207 (30%), Gaps = 32/207 (15%) Query: 29 FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVV-----ILVGPSGSGKSCLANI 83 F P + + + ++ A+ S + + G GK+ L Sbjct: 174 VFGSPLDSRYTFESFVEGASNRVALAAARSIAEGHKSALRFNPLFIHASVGLGKTHLLQA 233 Query: 84 WSDKSRSTRFSNIAKSLDSILIDTRKPVLLED------------IDLLDFNDTQLF---- 127 + + S L + R + D IDLL +D Q Sbjct: 234 IAASALKRLTSARVIYLTAEYFMWRFATAIRDNDALSFKEQLRDIDLLIIDDMQFLQGKS 293 Query: 128 ------HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 H++N + +++ A P + SRL+ ++I PD + ++ Sbjct: 294 IQHEFCHLLNMLLDSAKQVVVAADRPPAELESLDLRVRSRLQGGVALEIEAPDYEMRLQM 353 Query: 182 IVKMFADRQ-----IFIDKKLAAYIVQ 203 + + Q + I + YI + Sbjct: 354 LRQRLKVAQQDDGMVSISDDILEYIAK 380 >gi|330813297|ref|YP_004357536.1| chromosomal replication initiator protein DnaA [Candidatus Pelagibacter sp. IMCC9063] gi|327486392|gb|AEA80797.1| chromosomal replication initiator protein DnaA [Candidatus Pelagibacter sp. IMCC9063] Length = 465 Score = 83.3 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 82/235 (34%), Gaps = 29/235 (12%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPS--WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 ++ + +V + + + + G G GK+ + N ++ + T Sbjct: 128 RLTFSNYVVGESNQLVFSAAKRVSESLGHYNPLFIYGSVGLGKTHILNAIGNELKKTDKK 187 Query: 95 NIAKSLDSI------------------LIDTRKPVLLEDIDLLDFND---TQLFHIINSI 133 I S + + ++L+DI + + + F+ NS+ Sbjct: 188 IIYLSAERFMYQFVKSIKNKDTQKFKDVFRNADVLILDDIQFISGKEVTQEEFFYTFNSL 247 Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD----- 188 + S ++++ P + SRL VV I PD +++ Sbjct: 248 VENQSQVIVSCDRSPNDLDRIQDRIKSRLSGGLVVDIQPPDIALRLQILKNRCKTEETYF 307 Query: 189 -RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +++ I ++ ++I + S+ +++++ + + T A +LK+ Sbjct: 308 GKEVLISDEILSFIANEFKSSIRDMLGVLNRIIASSRIQNKVPTLQDARLILKDL 362 >gi|90421529|ref|YP_529899.1| chromosomal replication initiation protein [Rhodopseudomonas palustris BisB18] gi|123395361|sp|Q21DF6|DNAA_RHOPB RecName: Full=Chromosomal replication initiator protein DnaA gi|90103543|gb|ABD85580.1| chromosomal replication initiator protein DnaA [Rhodopseudomonas palustris BisB18] Length = 473 Score = 83.3 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 26/246 (10%), Positives = 74/246 (30%), Gaps = 34/246 (13%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWP------SRVVILVGPSGSGKSCLANI--W 84 P ++ ++ + A + + G GK+ L W Sbjct: 130 PLDPRLTFGSFVIGRSNTLAHAAARQVAEGRRGDPVMFNPLYIHSGVGLGKTHLLQAVTW 189 Query: 85 SDKSR------------------STRFSNIAKSLDSILIDTRKPVLLEDIDLLDF--NDT 124 + S + S A + + ++++D+ L Sbjct: 190 AGNSGTERKVLYLTAEKFMYGFVAALKSQTALAFKEA-LRGIDVLVIDDLQFLQGKTTQA 248 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + H +N++ +++ A P + SRL VV+++ +D ++ Sbjct: 249 EFCHTLNALIDAGRQVVIAADRPPSDLESLDERVRSRLAGGLVVEMASLGEDLRLGILKS 308 Query: 185 -----MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + + Y+ + + + E ++++ + +T +A + Sbjct: 309 RVTAARAHHASFDVPLPVLEYLARTITHNGRDLEGAINRLLAHSKLNAQPVTLEMAEREI 368 Query: 240 KETQQC 245 ++ + Sbjct: 369 RDLVRP 374 >gi|94986446|ref|YP_594379.1| DNA replication initiation ATPase [Lawsonia intracellularis PHE/MN1-00] gi|226735823|sp|Q1MSG8|DNAA_LAWIP RecName: Full=Chromosomal replication initiator protein DnaA gi|94730695|emb|CAJ54057.1| ATPase involved in DNA replication initiation [Lawsonia intracellularis PHE/MN1-00] Length = 478 Score = 82.9 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 46/264 (17%), Positives = 89/264 (33%), Gaps = 45/264 (17%) Query: 23 NKEEQLFFS-------FPRCL-GISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILV 70 ++ EQL F S D +V A +I S + L Sbjct: 119 SQTEQLPLPVSLVKAPFSSRSWRYSFDSFVVGPCNNLAHAAAQNMIKDTAS--VDTLFLS 176 Query: 71 GPSGSGKSCLANIWSDK---------------SRSTRFSNIAKSLDSILIDT-------R 108 G GK+ L + S +SL + +D+ Sbjct: 177 SGPGLGKTHLTQAVGQALCNISNRANPKVEYLTAEEFCSCFVQSLRTKNVDSFKGRFRDT 236 Query: 109 KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 LLEDI L + +L I S+ S +++T+ P L SR + Sbjct: 237 DLFLLEDIHFLQGKEKMQDELLATIRSLQGRGSRVVLTSSFAPKELKNVDNRLVSRFCSG 296 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 + I P+ + +++++ + + + +A ++ ++ + +L + NL L Sbjct: 297 FLAGIEKPNAETRRRILIEKAKVHAVVLSEAVADFLAMKL---VGDIRQLESSISNLVLK 353 Query: 226 RG---MGITRSLAAEVLKETQQCD 246 I+ +A +V+ + Q D Sbjct: 354 AKLLDCMISMDMAKDVIAQYTQDD 377 >gi|148651819|ref|YP_001278912.1| chromosomal replication initiator protein DnaA [Psychrobacter sp. PRwf-1] gi|148570903|gb|ABQ92962.1| chromosomal replication initiator protein DnaA [Psychrobacter sp. PRwf-1] Length = 470 Score = 82.9 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 29/234 (12%), Positives = 78/234 (33%), Gaps = 27/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLI-----DSWPSWPSRVVILVGPSGSGKSCLANIWSDKS- 88 + + + + A + + + + L GPSG GK+ L + + + Sbjct: 136 NPYFTFETFVSGKSNMLAYKACQELGKKQSQNRHNP-LFLYGPSGLGKTHLMHSVAHRYL 194 Query: 89 ---------------RSTRFSNIAKSLDSIL--IDTRKPVLLEDIDLLDF---NDTQLFH 128 ++ + ++ I ++++D+ +L + + Sbjct: 195 KIGKTFYYFSSEKFINQLVYALRNQKIEEFKRKIKRVDLLIIDDVHVLAGKNKSSNEFLS 254 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 + +++ + P SR + V I P+ + +++ K Sbjct: 255 LFADFMVEGKQVILASDRHPSQMTEFDERFRSRFSSGLAVAIEPPEMETRMQILQKKAHL 314 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + K+ A +I Q + ++ E ++++ A G I + LK+ Sbjct: 315 SGVDLPKECALFIAQNVVSNVRRLEGALNQVVATANLTGNPIDLDMVQYALKDV 368 >gi|317486879|ref|ZP_07945690.1| chromosomal replication initiator protein DnaA [Bilophila wadsworthia 3_1_6] gi|316921869|gb|EFV43144.1| chromosomal replication initiator protein DnaA [Bilophila wadsworthia 3_1_6] Length = 477 Score = 82.9 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 39/259 (15%), Positives = 78/259 (30%), Gaps = 35/259 (13%) Query: 23 NKEEQLFFSF--------PRCLGISRDDLLVHSAIEQAVRLIDSWP--SWPSRVVILVGP 72 + EQL P + D +V + A + + L Sbjct: 123 SAAEQLSLPITMPVNQSVPHNWRYAFDSFVVGPTNDMAYAAARNMARSGAAVDTLFLSSG 182 Query: 73 SGSGKSCLANIW-------------------SDKSRSTRFSNIAKSLDSIL---IDTRKP 110 G GK+ L +++ S + Sbjct: 183 PGLGKTHLTQAVGQALCEASNRSNPKVEYLTAEEFSSCFVQALQSRTVDRFKGRFRDVDL 242 Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 +LLED+ L + ++ I S+ + S +++T+ P L SR + + Sbjct: 243 LLLEDVHFLQGKEKMQDEVLSTIKSLQEKGSRVVLTSSFAPCELRNVDNSLVSRFCSGFL 302 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 I PD +++ + + + + +R+ + E V + A G Sbjct: 303 AGIEKPDASTRRRILQEKARQNNALLSDTVVDVLTERLTGDIRQLESCVHNLLLKAKLLG 362 Query: 228 MGITRSLAAEVLKETQQCD 246 I+ +A E+L + D Sbjct: 363 CTISVEMAQEILAQYSLDD 381 >gi|116747453|ref|YP_844140.1| chromosomal replication initiator protein DnaA [Syntrophobacter fumaroxidans MPOB] gi|166215364|sp|A0LE53|DNAA_SYNFM RecName: Full=Chromosomal replication initiator protein DnaA gi|116696517|gb|ABK15705.1| chromosomal replication initiator protein DnaA [Syntrophobacter fumaroxidans MPOB] Length = 450 Score = 82.9 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 37/231 (16%), Positives = 80/231 (34%), Gaps = 27/231 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWP---SRVVILVGPSGSGKSCLANI-------- 83 + D +V + A + ++ V L+ +G GKS L + Sbjct: 110 NPRFTFDHFVVGGCNQFAYAAAMGMANNQQLYNQSVYLLSDTGLGKSHLTHAVGNYLRNR 169 Query: 84 -------------WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QLF 127 ++++ + + ++ + +LLE I+ L + +L Sbjct: 170 KPELRVQYVTTEQFANEMIFSLKNGNMEAFKNKFRTGCDVLLLEKIEFLSGKEKIQKELV 229 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 + ++ + ++L T +P +L SRL + I PD ++I + Sbjct: 230 YTLDELMDRGKTVLCTGNAYPKDIPKLNSELQSRLGGGLLAPIDKPDFKTRIEIIKRKSH 289 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238 I + ++ Y+ R+ + E + + + IT LA EV Sbjct: 290 TENIRVPMEVVEYLADRITGDVRQLESCLVGLMAKSNILRTPITLDLAREV 340 >gi|46205665|ref|ZP_00048226.2| COG0593: ATPase involved in DNA replication initiation [Magnetospirillum magnetotacticum MS-1] Length = 322 Score = 82.9 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 33/240 (13%), Positives = 79/240 (32%), Gaps = 30/240 (12%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSW-----PSWPSRVVILVGPSGSGKSCLANIWSDK 87 P ++ V + A + + + G GK+ L + Sbjct: 22 PLDARLTVASFFVVRSNALAHAAAERVARSDGEGALYNPLYVHAGVGLGKTHLLHAAGHA 81 Query: 88 SRSTRFSNIAKSLDSIL------------------IDTRKPVLLEDIDLLDFN--DTQLF 127 +R I + D + + ++L+D+ + T+ Sbjct: 82 AREAGRRVIYLTADRFMYGFVNALKTQNALAFKERLRAIDLLILDDVQFIQGKSIQTEFG 141 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI-VKMF 186 H +N++ +++ + P + SRL VV+I D+ ++ ++ Sbjct: 142 HTLNALIDSGRQVVVASDRPPTELEALDERVRSRLAGGLVVEIGGLDEGLRASILSARLE 201 Query: 187 ADR----QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 A R + ++AY+ + + + E V+++ A G +T A +++ Sbjct: 202 AVRHSHPNFEVSPAVSAYVARAITANGRDLEGAVNRLLAHATLTGAPVTVETAETAIRDL 261 >gi|91762459|ref|ZP_01264424.1| Chromosomal replication initiator protein [Candidatus Pelagibacter ubique HTCC1002] gi|91718261|gb|EAS84911.1| Chromosomal replication initiator protein [Candidatus Pelagibacter ubique HTCC1002] Length = 470 Score = 82.9 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 34/215 (15%), Positives = 75/215 (34%), Gaps = 41/215 (19%) Query: 40 RDDLLVHSAIEQAVRL-------IDSWPSWPSRVVILVGPSGSGKSCLAN---------- 82 D+ + ++ + A I + + G G GK+ L N Sbjct: 133 FDNFITGTSNKLAYEASMKVSENISH-----YNPLYIYGGVGMGKTHLLNSIGLSLKEKN 187 Query: 83 ----IWSDKSRSTRFSNIAKSLDSILID---TRKPVLLEDIDLLDFND---TQLFHIINS 132 I +++ +I + + +L++DI ++ + + FH N+ Sbjct: 188 KVMFISAERFMYQFVKSIKSNDMVKFKEYFRNTDILLIDDIQFMNGKEAMQEEFFHTFNA 247 Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM------F 186 + S ++++A P + SR VV I PD + K++ + F Sbjct: 248 LLDKGSQVIISADRAPNKLSRIQDRIKSRFAGGLVVDIQKPDYELRNKIVRQKTEELNIF 307 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 Q+ I +++ +I + +LV ++ Sbjct: 308 YSNQVNISEEIQKFISTEIT---TSIRELVGAINR 339 >gi|256827819|ref|YP_003156547.1| chromosomal replication initiator protein DnaA [Desulfomicrobium baculatum DSM 4028] gi|256576995|gb|ACU88131.1| chromosomal replication initiator protein DnaA [Desulfomicrobium baculatum DSM 4028] Length = 449 Score = 82.5 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 45/255 (17%), Positives = 77/255 (30%), Gaps = 40/255 (15%) Query: 26 EQLFFSFPR--------CLGISRDDLLVHSAIEQAV----RLIDSWPSWPSRVVILVGPS 73 Q+ DD +V A S + L Sbjct: 98 RQMGLPMAHALPTQTVQNWRHQFDDFIVGPCNNLAYVASRSFCQDVQG--SDQLFLCSAP 155 Query: 74 GSGKSCLANIW----SDKSRSTRFSNIAKSLDSI---LIDTRKPVLLE--------DIDL 118 G GK+ LA + ++ S + L+ K +E ++DL Sbjct: 156 GLGKTHLAQAIGSEIARQTNRQHLRVCYLSGEEFASQLVMAIKAKAVEQFKARFRSNVDL 215 Query: 119 LDFNDTQLFH--------IIN---SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 L D F ++N S+ ++MT+ P +L SR + Sbjct: 216 LLLEDVHFFQGKEKMQDELLNTLKSLQNQGRRVVMTSTFLPRELSDIDSNLLSRFAQGFM 275 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 I PD +I Q+ + +A + R++ + E + + A Sbjct: 276 AVIDKPDFQTRMGIIQAKAQASQVSMPGSVAELLAGRIKTDVRQLESCLKNIILKAKLLN 335 Query: 228 MGITRSLAAEVLKET 242 M IT LA E+L+ Sbjct: 336 MDITMDLAWEILQNY 350 >gi|307942712|ref|ZP_07658057.1| chromosomal replication initiator protein DnaA [Roseibium sp. TrichSKD4] gi|307773508|gb|EFO32724.1| chromosomal replication initiator protein DnaA [Roseibium sp. TrichSKD4] Length = 494 Score = 82.5 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 37/239 (15%), Positives = 81/239 (33%), Gaps = 28/239 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSRST 91 + D + + + A+ + + L G GK+ L + K+R++ Sbjct: 157 DPKYTFDTFVEGESNQLALAAARQVAAGGAVTFNPLFLHASVGLGKTHLMQAVAAKARAS 216 Query: 92 RFSNIAKSLDSI------LIDTRKPVLLED----IDLLDFNDTQLFH----------IIN 131 + + + + + + +D IDLL +D Q H +N Sbjct: 217 GRKVLYLTAEHFMYRFVSALKAQSALAFKDTLRTIDLLLIDDMQFLHGKQVQQEFCHTLN 276 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM--FADR 189 ++ +++ A P + SRL VV I PD ++ A + Sbjct: 277 ALIDGARQVIVAADRAPSELDSLDDRVRSRLSGGLVVGIHEPDFVLRRNILDSRVILARK 336 Query: 190 ---QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 + ++ YI + + S E ++++ IT+ +A L++ + Sbjct: 337 TYPNFEVPDQVLDYIARHVASSGRDLEGALNRLIAHNQLTNQPITQEMAELTLRDLVRS 395 >gi|154243959|ref|YP_001414917.1| chromosomal replication initiation protein [Xanthobacter autotrophicus Py2] gi|226735865|sp|A7IB67|DNAA_XANP2 RecName: Full=Chromosomal replication initiator protein DnaA gi|154158044|gb|ABS65260.1| chromosomal replication initiator protein DnaA [Xanthobacter autotrophicus Py2] Length = 506 Score = 82.5 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 33/245 (13%), Positives = 80/245 (32%), Gaps = 33/245 (13%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDS-WPSWPSRV-----VILVGPSGSGKSCLANIWSD 86 P ++ + +V + A S P + L G GK+ L + Sbjct: 163 PLDARLTFETFVVGKSNSLAFAAAKQVAESAPGSAPVFNPLYLHAAVGLGKTHLLQAIA- 221 Query: 87 KSRSTRFSNIAKSLDS-------ILIDTRKPVLLED----IDLLDFNDTQLF-------- 127 ++ + + T + +D ID L +D Q Sbjct: 222 RAGAVGGRRTTYLTAERFMYGFVAALKTHSAIAFKDALRTIDTLVIDDLQFLKGNNLQQE 281 Query: 128 --HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 H +N++ +++ A P + SRL VV+++ ++D +++ Sbjct: 282 FCHTLNALLDGGRQVVVAADCLPGELEHLDERVRSRLAGGLVVELAALEEDLRLEILKAR 341 Query: 186 F-----ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + + ++ + + +S + ++K+ G +T +A +K Sbjct: 342 YQTLTEQHPGFAVPAPVLEFLARSVGQSGRDLDGALNKLLAFNQLTGEPVTLEMAENAVK 401 Query: 241 ETQQC 245 + + Sbjct: 402 DLIRP 406 >gi|157825988|ref|YP_001493708.1| chromosomal replication initiation protein [Rickettsia akari str. Hartford] gi|166214696|sp|A8GP75|DNAA_RICAH RecName: Full=Chromosomal replication initiator protein DnaA gi|157799946|gb|ABV75200.1| chromosomal replication initiation protein [Rickettsia akari str. Hartford] Length = 463 Score = 82.1 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 33/250 (13%), Positives = 83/250 (33%), Gaps = 48/250 (19%) Query: 35 CLGISRDDLLVHSAIEQ-------------AVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 + + D+ +V + E AV S + L G G GK+ L Sbjct: 127 DVRFTFDNFVVGAPNELAYAAARAVAESSGAVS--------ESNPLFLYGGVGLGKTHLM 178 Query: 82 NI--W---------------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDF 121 + W ++K + + + + V +++DI + Sbjct: 179 HAIGWYIKQNNPSRKVIYMSAEKFMYQFVKALRNKEVILFKEKFRSVDVLMIDDIQFICG 238 Query: 122 ND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178 D + FH N++ + ++++ P + SRL V + + Sbjct: 239 KDSTQEEFFHTFNTLIDNNRQMVISCDRSPSDLDNIEDRIKSRLGWGLVADVHSTTYELR 298 Query: 179 EKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR----SL 234 ++ + I K + ++ ++ ++ E ++K+ + IT ++ Sbjct: 299 LGILESKIEQMNVKIPKDVIDFLASKIVSNVRELEGALNKVIAHSNFTLKEITLENTQNI 358 Query: 235 AAEVLKETQQ 244 ++L+ ++ Sbjct: 359 LRDLLRSNER 368 >gi|319405028|emb|CBI78638.1| chromosomal replication initiator protein DnaA [Bartonella sp. AR 15-3] Length = 521 Score = 82.1 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 33/207 (15%), Positives = 68/207 (32%), Gaps = 32/207 (15%) Query: 29 FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP-----SRVVILVGPSGSGKSCLANI 83 F P + ++ + ++ A+ S + + G GK+ L Sbjct: 172 VFGSPLDSRYTFENFVEGASNRVALAAARSIAEGHKSSLRFNPLFIYASVGLGKTHLLQA 231 Query: 84 WSDKSRSTRFSNIAKSLDSILIDTRKPVLLED------------IDLLDFNDTQLF---- 127 + + S L + R + + D IDLL +D Q Sbjct: 232 IAAGALKRLTSARVIYLTAEYFMWRFAMAIRDNDALSFKEQLRDIDLLIIDDMQFLQGKS 291 Query: 128 ------HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 H++N + +++ A P + SRL+ ++I PD + ++ Sbjct: 292 IQREFCHLLNMLLDSAKQVIVAADRPPAELESLDLRVRSRLQGGVALEIETPDYEMRLEM 351 Query: 182 IVKMFADRQ-----IFIDKKLAAYIVQ 203 + + Q + I ++ AYI + Sbjct: 352 LRQRLKIAQQDDNMVMISDEILAYIAK 378 >gi|239947628|ref|ZP_04699381.1| chromosomal replication initiator protein DnaA [Rickettsia endosymbiont of Ixodes scapularis] gi|239921904|gb|EER21928.1| chromosomal replication initiator protein DnaA [Rickettsia endosymbiont of Ixodes scapularis] Length = 463 Score = 82.1 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 35/250 (14%), Positives = 83/250 (33%), Gaps = 48/250 (19%) Query: 35 CLGISRDDLLVHSAIEQ-------------AVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 + + D+ +V + E AV S + L G G GK+ L Sbjct: 127 DVRFTFDNFVVGAPNELAYAAARAVAESSGAVS--------ESNPLFLYGGVGLGKTHLM 178 Query: 82 NI--WSDKSRSTRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDF 121 + W K + I S + + K + +++DI + Sbjct: 179 HAIGWYIKQNNPSRKVIYMSAEKFMYQFVKALRNKEVISFKEKFRSVDVLMIDDIQFICG 238 Query: 122 ND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178 D + FH N++ + ++++ P + SRL V + + Sbjct: 239 KDSTQEEFFHTFNTLIDNNRQMVISCDRSPSDLDNIEDRIKSRLGWGLVADVHSTTYELR 298 Query: 179 EKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR----SL 234 ++ + I K + ++ ++ ++ E ++K+ + IT ++ Sbjct: 299 LGILESKIEQMNVKIPKDVIDFLASKIVSNVRELEGALNKVIAHSNFTLKEITLENTQNI 358 Query: 235 AAEVLKETQQ 244 ++L+ ++ Sbjct: 359 LRDLLRSNER 368 >gi|168698781|ref|ZP_02731058.1| initiation of chromosome replication [Gemmata obscuriglobus UQM 2246] Length = 504 Score = 82.1 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 33/230 (14%), Positives = 80/230 (34%), Gaps = 27/230 (11%) Query: 39 SRDDLLVHSAIEQAVR----LIDSWPSWPSRVVILVGPSGSGKSCLAN-IWS---DKSRS 90 S D + A ++ + +++ GP G+GK+ L +++ +S Sbjct: 166 SLADFVSGPCNRVAHASALSAVEEPGQGANP-LVIHGPVGTGKTHLLEGVYAGLKRQSDQ 224 Query: 91 TRFSNIAKSLDSILIDTRKP---------------VLLEDIDLLD---FNDTQLFHIINS 132 A+ + + + +LL+D+ L + H ++ Sbjct: 225 RPCYVTAEEFTTKFVQASRLGKMSQFRRQFRECSVLLLDDLHFLATKKATQEEFLHTFDA 284 Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 + +++T P +P+L RL V + PD + +++ K Sbjct: 285 LIADGRQVVVTTDCHPRLADELMPELLDRLLGGAVWGLQPPDPETRLEILRKKSCGANPP 344 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 I + + + + ++ E ++ + + A G + + A E L + Sbjct: 345 IPENVLKTLANTLRGNVRELEGAINSVRHYAKVTGRPVDLATAREALGDL 394 >gi|157964743|ref|YP_001499567.1| chromosomal replication initiation protein [Rickettsia massiliae MTU5] gi|167016904|sp|A8F284|DNAA_RICM5 RecName: Full=Chromosomal replication initiator protein DnaA gi|157844519|gb|ABV85020.1| Chromosomal replication initiator protein DnaA [Rickettsia massiliae MTU5] Length = 463 Score = 82.1 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 35/250 (14%), Positives = 83/250 (33%), Gaps = 48/250 (19%) Query: 35 CLGISRDDLLVHSAIEQ-------------AVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 + + D+ +V + E AV S + L G G GK+ L Sbjct: 127 DVRFTFDNFVVGAPNELAYAAARAVAESSGAVS--------ESNPLFLYGGVGLGKTHLM 178 Query: 82 NI--WSDKSRSTRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDF 121 + W K + I S + + K + +++DI + Sbjct: 179 HAIGWYIKQNNPSRKVIYMSAEKFMYQFVKALRNKEVISFKEKFRSVDVLMIDDIQFICG 238 Query: 122 ND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178 D + FH N++ + ++++ P + SRL V + + Sbjct: 239 KDSTQEEFFHTFNTLIDNNRQMVISCDRSPSDLDNIEDRIKSRLGWGLVADVHSTTYELR 298 Query: 179 EKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR----SL 234 ++ + I K + ++ ++ ++ E ++K+ + IT ++ Sbjct: 299 LGILESKIEQMNVKIPKDVIDFLASKIVSNVRELEGALNKVIAHSNFTLKEITLENTQNI 358 Query: 235 AAEVLKETQQ 244 ++L+ ++ Sbjct: 359 LRDLLRSNER 368 >gi|67458756|ref|YP_246380.1| chromosomal replication initiation protein [Rickettsia felis URRWXCal2] gi|75536787|sp|Q4UMJ3|DNAA_RICFE RecName: Full=Chromosomal replication initiator protein DnaA gi|67004289|gb|AAY61215.1| Chromosomal replication initiator protein DnaA [Rickettsia felis URRWXCal2] Length = 463 Score = 82.1 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 35/250 (14%), Positives = 83/250 (33%), Gaps = 48/250 (19%) Query: 35 CLGISRDDLLVHSAIEQ-------------AVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 + + D+ +V + E AV S + L G G GK+ L Sbjct: 127 DVRFTFDNFVVGAPNELAYAAARAVAESSGAVS--------ESNPLFLYGGVGLGKTHLM 178 Query: 82 NI--WSDKSRSTRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDF 121 + W K + I S + + K + +++DI + Sbjct: 179 HAIGWYIKQNNPSRKVIYMSAEKFMYQFVKALRNKEVISFKEKFRSVDVLMIDDIQFICG 238 Query: 122 ND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178 D + FH N++ + ++++ P + SRL V + + Sbjct: 239 KDSTQEEFFHTFNTLIDNNRQMVISCDRSPSDLDNIEDRIKSRLGWGLVADVHSTTYELR 298 Query: 179 EKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR----SL 234 ++ + I K + ++ ++ ++ E ++K+ + IT ++ Sbjct: 299 LGILESKIEQMNVKIPKDVIDFLASKIVSNVRELEGALNKVIAHSNFTLKEITLENTQNI 358 Query: 235 AAEVLKETQQ 244 ++L+ ++ Sbjct: 359 LRDLLRSNER 368 >gi|238650715|ref|YP_002916568.1| chromosomal replication initiation protein [Rickettsia peacockii str. Rustic] gi|259645260|sp|C4K1R9|DNAA_RICPU RecName: Full=Chromosomal replication initiator protein DnaA gi|238624813|gb|ACR47519.1| chromosomal replication initiation protein [Rickettsia peacockii str. Rustic] Length = 463 Score = 82.1 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 35/250 (14%), Positives = 84/250 (33%), Gaps = 48/250 (19%) Query: 35 CLGISRDDLLVHSAIEQ-------------AVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 + D+ +V + E AV S + L G G GK+ L Sbjct: 127 DARFTFDNFVVGAPNELAYAAARAVAESSGAVS--------ESNPLFLYGGVGLGKTHLM 178 Query: 82 NI--W----SDKSRSTRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDF 121 + W + SR + + K + + R ++++DI + Sbjct: 179 HAIGWYIKQHNPSRKVIYMSAEKFMYQFVKALRNKEVISFKEKFRSVDVLMIDDIQFICG 238 Query: 122 ND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178 D + FH N++ + ++++ P + SRL V + + Sbjct: 239 KDSTQEEFFHTFNTLIDNNRQMVISCDRSPSDLDNIEDRIKSRLGWGLVADVHSTTYELR 298 Query: 179 EKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR----SL 234 ++ + I K + ++ ++ ++ E ++K+ + IT ++ Sbjct: 299 LGILESKIEQMNVKIPKDVIDFLASKIVSNVRELEGALNKVIAHSNFTLKEITLENTQNI 358 Query: 235 AAEVLKETQQ 244 ++L+ ++ Sbjct: 359 LRDLLRSNER 368 >gi|332701174|ref|ZP_08421262.1| Chromosomal replication initiator protein dnaA [Desulfovibrio africanus str. Walvis Bay] gi|332551323|gb|EGJ48367.1| Chromosomal replication initiator protein dnaA [Desulfovibrio africanus str. Walvis Bay] Length = 454 Score = 82.1 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 79/229 (34%), Gaps = 28/229 (12%) Query: 39 SRDDLLVHSAIEQAVRLIDSW--PSWPSRVVILVGPSGSGKSCL----ANIWSDKSRSTR 92 S DD +V + + A + + + +G GK+ L + D++RS Sbjct: 124 SFDDFVVGPSNDLAYAAAQGVVRNDFSPGPLFISSSAGLGKTHLIQAIGHAAQDRTRSKS 183 Query: 93 FSNIAKSLDSILI-------------------DTRKPVLLEDIDLLDFN---DTQLFHII 130 + + + + +LLEDI L +L I Sbjct: 184 LTLRYLTAEEFATKMLMALNAKDMSRFKTQFREGIDILLLEDIHFLQGKAMFQDELLSTI 243 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 ++ + S ++ T+ P L SR + + I +PD D +++ Q Sbjct: 244 KALQERGSRVVFTSSFLPKELSNVDTHLVSRFCSGFLTVIDMPDFDMRRRIVQHKSRQLQ 303 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + + +A + + + + E + + A I+ +A +VL Sbjct: 304 VNVPDDVAELLAESITCDIRQLESCLQNLVLKARLLNERISLDMARDVL 352 >gi|120602039|ref|YP_966439.1| chromosomal replication initiator protein DnaA [Desulfovibrio vulgaris DP4] gi|120562268|gb|ABM28012.1| DnaA family protein [Desulfovibrio vulgaris DP4] Length = 504 Score = 82.1 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 38/272 (13%), Positives = 84/272 (30%), Gaps = 51/272 (18%) Query: 18 NDQPKNKEEQLFFSFPRCL--------GISRDDLLVHSAIEQAVR----------LIDSW 59 + + + +EQL S DD +V E A + D Sbjct: 137 SAETQQAQEQLGLPLDWAPVPQSRTNWRFSFDDFIVGPNNELACAAARGMCRDGLMTD-- 194 Query: 60 PSWPSRVVILVGPSGSGKSCLANIW-------------------SDKSRSTRFSNIAKSL 100 + L G GK+ L + +++ S + + Sbjct: 195 ------TLFLSSGPGLGKTHLLHAVGRSLCESSNRSNPNVAYLTAEEFASRLIAALKARD 248 Query: 101 DSILIDTRKPV---LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + V LLED+ L + ++ + ++ S ++ ++ Sbjct: 249 VERFKARYRDVDVLLLEDVHFLQGKEKMQDEVLATVKALQSRGSRIVFSSSFAARDLKNV 308 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 L SR + + I PD D +++ + Q+ + + + +R+ + E Sbjct: 309 DNQLVSRFCSGFLAGIERPDFDTRRRILREKARIYQVMLPDNVTDLLAERISTDVRQIES 368 Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + + A I+ +A E++ Q + Sbjct: 369 CLHNLILKAKLLNRQISLEMAFEIIGNYAQAE 400 >gi|50364816|ref|YP_053241.1| chromosomal replication initiator protein [Mesoplasma florum L1] gi|61212578|sp|Q6F2A9|DNAA_MESFL RecName: Full=Chromosomal replication initiator protein DnaA gi|50363372|gb|AAT75357.1| chromosomal replication initiator protein [Mesoplasma florum L1] Length = 443 Score = 82.1 bits (202), Expect = 7e-14, Method: Composition-based stats. Identities = 31/214 (14%), Positives = 76/214 (35%), Gaps = 29/214 (13%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDKSRST 91 ++ ++ +V S+ +QA + + P + + G SG GK+ L +++ Sbjct: 103 ENALTFENFIVGSSNKQANLAAKNVVANPGMSFNPLFIYGDSGLGKTHLLQAIKNQAELN 162 Query: 92 RFSNIAKSLDSIL---------------------IDTRKPVLLEDIDLLDFNDTQ---LF 127 + + + I++ + +L+D+ L D F Sbjct: 163 GKKVLYLTSEEFTKRIVNALNKGDLSEIEELKTEINSNEFFILDDVQFLSKKDKTNEFFF 222 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 +IIN+ + L+ ++ P + +R + I+ D + +I Sbjct: 223 NIINNFTENGKQLVFSSDKTPELLNGFDKRMITRFNSGLSTPINALDIPTAKLIIEAEIK 282 Query: 188 DRQI--FIDKKLAAYIVQRMERSLVFAEKLVDKM 219 + + I + Y+ Q + + LV+++ Sbjct: 283 KQGLKQKIKEDAVVYLAQNFSDDVRKIKGLVNRL 316 >gi|311234387|gb|ADP87241.1| chromosomal replication initiator protein DnaA [Desulfovibrio vulgaris RCH1] Length = 504 Score = 81.7 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 38/272 (13%), Positives = 84/272 (30%), Gaps = 51/272 (18%) Query: 18 NDQPKNKEEQLFFSFPRCL--------GISRDDLLVHSAIEQAVR----------LIDSW 59 + + + +EQL S DD +V E A + D Sbjct: 137 SAETQQAQEQLGLPLDWAPVPQSRTNWRFSFDDFIVGPNNELACAAARGMCRDGLMTD-- 194 Query: 60 PSWPSRVVILVGPSGSGKSCLANIW-------------------SDKSRSTRFSNIAKSL 100 + L G GK+ L + +++ S + + Sbjct: 195 ------TLFLSSGPGLGKTHLLHAVGRSLCESSNRSNPNVAYLTAEEFASRLIAALKARD 248 Query: 101 DSILIDTRKPV---LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + V LLED+ L + ++ + ++ S ++ ++ Sbjct: 249 VERFKARYRDVDVLLLEDVHFLQGKEKMQDEVLATVKALQSRGSRIVFSSSFAARDLKNV 308 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 L SR + + I PD D +++ + Q+ + + + +R+ + E Sbjct: 309 DNQLVSRFCSGFLAGIERPDFDTRRRILREKARIYQVMLPDNVTDLLAERISTDVRQIES 368 Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + + A I+ +A E++ Q + Sbjct: 369 CLHNLILKAKLLNRQISLEMAFEIIGNYAQAE 400 >gi|51473779|ref|YP_067536.1| chromosomal replication initiation protein [Rickettsia typhi str. Wilmington] gi|61212556|sp|Q68WD8|DNAA_RICTY RecName: Full=Chromosomal replication initiator protein DnaA gi|51460091|gb|AAU04054.1| chromosomal replication initiator protein DnaA [Rickettsia typhi str. Wilmington] Length = 463 Score = 81.7 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 33/248 (13%), Positives = 83/248 (33%), Gaps = 36/248 (14%) Query: 29 FFSFPRCLGISRDDLLVHSAIEQAVRLI-----DSWPSWPSRVVILVGPSGSGKSCLANI 83 + D+ +V + E A S + S + L G G GK+ L + Sbjct: 125 TLDL----RFTFDNFVVGAPNELAYAAARAVAESSGAVFESNPLFLYGGVGLGKTHLMHA 180 Query: 84 --W---------------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDIDLLDFND 123 W ++K + + + + V +++DI + D Sbjct: 181 IGWYIKQNNPSRKVIYMSAEKFMYQFVKALRNKEVILFKEKFRSVDVLMIDDIQFICGKD 240 Query: 124 ---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 + FH N++ + ++++ P + SRL V + + Sbjct: 241 STQEEFFHTFNTLIDNNRQMVISCDRSPSDLDNIEDRIKSRLGWGLVADVHSTTYELRLG 300 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR----SLAA 236 ++ + I K + ++ ++ ++ E ++K+ + IT ++ Sbjct: 301 ILESKIEQMNVKIPKDVINFLASKIVSNVRELEGALNKVIAHSNFTLKAITLENTQNILR 360 Query: 237 EVLKETQQ 244 ++L+ ++ Sbjct: 361 DLLRSNER 368 >gi|71083115|ref|YP_265834.1| chromosomal replication initiator protein [Candidatus Pelagibacter ubique HTCC1062] gi|71062228|gb|AAZ21231.1| Chromosomal replication initiator protein [Candidatus Pelagibacter ubique HTCC1062] Length = 444 Score = 81.7 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 34/215 (15%), Positives = 75/215 (34%), Gaps = 41/215 (19%) Query: 40 RDDLLVHSAIEQAVRL-------IDSWPSWPSRVVILVGPSGSGKSCLAN---------- 82 D+ + ++ + A I + + G G GK+ L N Sbjct: 107 FDNFITGTSNKLAYEASMKVSENISH-----YNPLYIYGGVGMGKTHLLNSIGLSLKEKN 161 Query: 83 ----IWSDKSRSTRFSNIAKSLDSILID---TRKPVLLEDIDLLDFND---TQLFHIINS 132 I +++ +I + + +L++DI ++ + + FH N+ Sbjct: 162 KVMFISAERFMYQFVKSIKSNDMVKFKEYFRNTDILLIDDIQFMNGKEAMQEEFFHTFNA 221 Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM------F 186 + S ++++A P + SR VV I PD + K++ + F Sbjct: 222 LLDKGSQVIISADRAPNKLSRIQDRIKSRFAGGLVVDIQKPDYELRSKIVKQKTEELNIF 281 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 Q+ I +++ +I + +LV ++ Sbjct: 282 YSNQVNISEEIQKFISTEIT---TSIRELVGAINR 313 >gi|229586943|ref|YP_002845444.1| chromosomal replication initiation protein [Rickettsia africae ESF-5] gi|259645259|sp|C3PP41|DNAA_RICAE RecName: Full=Chromosomal replication initiator protein DnaA gi|228021993|gb|ACP53701.1| Chromosomal replication initiator protein DnaA [Rickettsia africae ESF-5] Length = 463 Score = 81.7 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 35/250 (14%), Positives = 85/250 (34%), Gaps = 48/250 (19%) Query: 35 CLGISRDDLLVHSAIEQ-------------AVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 + + D+ +V + E AV S + L G G GK+ L Sbjct: 127 DVRFTFDNFVVGAPNELAYAAARAVAESSGAVS--------ESNPLFLYGGVGLGKTHLM 178 Query: 82 NI--W----SDKSRSTRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDF 121 + W + SR + + K + + R ++++DI + Sbjct: 179 HAIGWYIKQHNPSRKVIYMSAEKFMYQFVKALRNKEVISFKEKFRSVDVLMIDDIQFICG 238 Query: 122 ND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178 D + FH N++ + ++++ P + SRL V + + Sbjct: 239 KDSTQEEFFHTFNTLIDNNRQMVISCDRSPSDLDNIEDRIKSRLGWGLVADVHSTTYELR 298 Query: 179 EKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR----SL 234 ++ + I K + ++ ++ ++ E ++K+ + IT ++ Sbjct: 299 LGILESKIEQMNVKIPKDVIDFLASKIVSNVRELEGALNKVIAHSNFTLKEITLENTQNI 358 Query: 235 AAEVLKETQQ 244 ++L+ ++ Sbjct: 359 LRDLLRSNER 368 >gi|15892839|ref|NP_360553.1| chromosomal replication initiation protein [Rickettsia conorii str. Malish 7] gi|157828772|ref|YP_001495014.1| chromosomal replication initiation protein [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933500|ref|YP_001650289.1| chromosomal replication initiation protein [Rickettsia rickettsii str. Iowa] gi|20137861|sp|Q92H56|DNAA_RICCN RecName: Full=Chromosomal replication initiator protein DnaA gi|166214699|sp|A8GSY1|DNAA_RICRS RecName: Full=Chromosomal replication initiator protein DnaA gi|189044601|sp|B0BYF7|DNAA_RICRO RecName: Full=Chromosomal replication initiator protein DnaA gi|15620024|gb|AAL03454.1| chromosomal replication initiator protein DnaA [Rickettsia conorii str. Malish 7] gi|157801253|gb|ABV76506.1| chromosomal replication initiation protein [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908587|gb|ABY72883.1| chromosomal replication initiator protein [Rickettsia rickettsii str. Iowa] Length = 463 Score = 81.7 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 35/250 (14%), Positives = 85/250 (34%), Gaps = 48/250 (19%) Query: 35 CLGISRDDLLVHSAIEQ-------------AVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 + + D+ +V + E AV S + L G G GK+ L Sbjct: 127 DVRFTFDNFVVGAPNELAYAAARAVAESSGAVS--------ESNPLFLYGGVGLGKTHLM 178 Query: 82 NI--W----SDKSRSTRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDF 121 + W + SR + + K + + R ++++DI + Sbjct: 179 HAIGWYIKQHNPSRKVIYMSAEKFMYQFVKALRNKEVISFKEKFRSVDVLMIDDIQFICG 238 Query: 122 ND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178 D + FH N++ + ++++ P + SRL V + + Sbjct: 239 KDSTQEEFFHTFNTLIDNNRQMVISCDRSPSDLDNIEDRIKSRLGWGLVADVHSTTYELR 298 Query: 179 EKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR----SL 234 ++ + I K + ++ ++ ++ E ++K+ + IT ++ Sbjct: 299 LGILESKIEQMNVKIPKDVIDFLASKIVSNVRELEGALNKVIAHSNFTLKEITLENTQNI 358 Query: 235 AAEVLKETQQ 244 ++L+ ++ Sbjct: 359 LRDLLRSNER 368 >gi|46580657|ref|YP_011465.1| chromosomal replication initiator protein DnaA [Desulfovibrio vulgaris str. Hildenborough] gi|71151796|sp|Q729U6|DNAA_DESVH RecName: Full=Chromosomal replication initiator protein DnaA gi|46450076|gb|AAS96725.1| chromosomal replication initiator protein DnaA [Desulfovibrio vulgaris str. Hildenborough] Length = 491 Score = 81.7 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 38/272 (13%), Positives = 84/272 (30%), Gaps = 51/272 (18%) Query: 18 NDQPKNKEEQLFFSFPRCL--------GISRDDLLVHSAIEQAVR----------LIDSW 59 + + + +EQL S DD +V E A + D Sbjct: 124 SAETQQAQEQLGLPLDWAPVPQSRTNWRFSFDDFIVGPNNELACAAARGMCRDGLMTD-- 181 Query: 60 PSWPSRVVILVGPSGSGKSCLANIW-------------------SDKSRSTRFSNIAKSL 100 + L G GK+ L + +++ S + + Sbjct: 182 ------TLFLSSGPGLGKTHLLHAVGRSLCESSNRSNPNVAYLTAEEFASRLIAALKARD 235 Query: 101 DSILIDTRKPV---LLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + V LLED+ L + ++ + ++ S ++ ++ Sbjct: 236 VERFKARYRDVDVLLLEDVHFLQGKEKMQDEVLATVKALQSRGSRIVFSSSFAARDLKNV 295 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 L SR + + I PD D +++ + Q+ + + + +R+ + E Sbjct: 296 DNQLVSRFCSGFLAGIERPDFDTRRRILREKARIYQVMLPDNVTDLLAERISTDVRQIES 355 Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + + A I+ +A E++ Q + Sbjct: 356 CLHNLILKAKLLNRQISLEMAFEIIGNYAQAE 387 >gi|34581452|ref|ZP_00142932.1| chromosomal replication initiator protein DnaA [Rickettsia sibirica 246] gi|28262837|gb|EAA26341.1| chromosomal replication initiator protein DnaA [Rickettsia sibirica 246] Length = 463 Score = 81.7 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 35/250 (14%), Positives = 85/250 (34%), Gaps = 48/250 (19%) Query: 35 CLGISRDDLLVHSAIEQ-------------AVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 + + D+ +V + E AV S + L G G GK+ L Sbjct: 127 DIRFTFDNFVVGAPNELAYAAARAVAESSGAVS--------ESNPLFLYGGVGLGKTHLM 178 Query: 82 NI--W----SDKSRSTRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDF 121 + W + SR + + K + + R ++++DI + Sbjct: 179 HAIGWYIKQHNPSRKVIYMSAEKFMYQFVKALRNKEVISFKEKFRSVDVLMIDDIQFICG 238 Query: 122 ND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178 D + FH N++ + ++++ P + SRL V + + Sbjct: 239 KDSTQEEFFHTFNTLIDNNRQMVISCDRSPSDLDNIEDRIKSRLGWGLVADVHSTTYELR 298 Query: 179 EKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR----SL 234 ++ + I K + ++ ++ ++ E ++K+ + IT ++ Sbjct: 299 LGILESKIEQMNVKIPKDVIDFLASKIVSNVRELEGALNKVIAHSNFTLKEITLENTQNI 358 Query: 235 AAEVLKETQQ 244 ++L+ ++ Sbjct: 359 LRDLLRSNER 368 >gi|257067224|ref|YP_003153479.1| chromosomal replication initiator protein DnaA [Brachybacterium faecium DSM 4810] gi|256558042|gb|ACU83889.1| chromosomal replication initiator protein DnaA [Brachybacterium faecium DSM 4810] Length = 565 Score = 81.7 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 38/241 (15%), Positives = 81/241 (33%), Gaps = 36/241 (14%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91 + D ++ S+ A + P+ + + G SG GK+ L + ++S Sbjct: 219 NSKYTFDTFVIGSSNRFAQAAASAVAETPAKAYNPLFIYGGSGLGKTHLLHAVGHYAQSL 278 Query: 92 RFSNIAKSLDSILIDTRKPVLLEDIDLLDFND--------------------------TQ 125 + + ++S ++ + Sbjct: 279 YPDVVVRYVNSEEFTNEFINSVQSGQFGKAQEFQRRYRDIDILLIDDIQFLQRAPETMEA 338 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 FH N+++ D +++T+ P G + SR + + + PD + ++ K Sbjct: 339 FFHTFNTLYNSDKQIVITSDLPPKELGGFEDRMRSRFEMGLMTDVQPPDLETRIAILRKK 398 Query: 186 -FADRQIFIDKKLAAYIVQRME---RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + + ++ YI + R L A V + +LSR + +LA VLK+ Sbjct: 399 VAQENTGEVPHEVLEYIASHIATNIRELEGALIRVQAL--HSLSRQ-PMDVTLAESVLKD 455 Query: 242 T 242 Sbjct: 456 L 456 >gi|220920055|ref|YP_002495356.1| chromosomal replication initiation protein [Methylobacterium nodulans ORS 2060] gi|219944661|gb|ACL55053.1| chromosomal replication initiator protein DnaA [Methylobacterium nodulans ORS 2060] Length = 499 Score = 81.7 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 31/240 (12%), Positives = 74/240 (30%), Gaps = 30/240 (12%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLID----SWPSWP-SRVVILVGPSGSGKSCLANIWSDK 87 P ++ +V + A + P + G GK+ L + Sbjct: 158 PLDPRLTFQSFVVGRSNALAHAAAERVAAHDGGGPVYNPLYFHAGVGLGKTHLLHAIGHA 217 Query: 88 SRSTRFSNIAKSLDSIL------------------IDTRKPVLLEDIDLLDFN--DTQLF 127 ++ I + D + + ++L+D+ + + Sbjct: 218 AKEVGRRVIYLTADRFMYGFVNALKTQNALAFKERLRAIDVLILDDVQFIQGRSIQAEFG 277 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 H +N++ ++ A P + SRL VV+I D+ ++ Sbjct: 278 HTLNALIDAGRQVVAAADRPPTELESLDERVRSRLAGGLVVEIGTLDEALRATILQSRLE 337 Query: 188 DRQIF-----IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + +A Y+ + + + E V+++ A G +T A +++ Sbjct: 338 AVRATHPAFEVSPAVAEYVAKAITANGRDLEGAVNRLLAHATLTGAPVTLETAETAIRDL 397 >gi|258646404|ref|ZP_05733873.1| ATPase [Dialister invisus DSM 15470] gi|260403806|gb|EEW97353.1| ATPase [Dialister invisus DSM 15470] Length = 541 Score = 81.7 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 38/253 (15%), Positives = 91/253 (35%), Gaps = 44/253 (17%) Query: 38 ISRDDLLVHSAIEQAVRL-------IDSWPSWPS-------------RVVILVGPSGSGK 77 + D+ + + E A + + + P + + GPSG GK Sbjct: 190 YTFDNFVHGNCNEIAFQSAHAIALSCEEYTDSPDTNYSKKKPEASNYNPLFIYGPSGLGK 249 Query: 78 SCLANIWS-----DKSRSTRFSNIAKSLDSILIDTRKP---------------VLLEDID 117 + L S + + +++ + LI++ + +L++DI Sbjct: 250 THLLLAISNYVKTHRPDLSVLFVTSENFTNELIESIRSGKMQEFREKYRTVDYLLIDDIQ 309 Query: 118 LLDFNDT----QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 + ++F+ N+I D+ ++ T+ P L +R + + IS P Sbjct: 310 FFNGTKESSRMEIFNTFNAIADNDNYIITTSDRTPSDLKDFHERLITRFSSGMIAHISPP 369 Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233 D + ++ K I + +++ ++I + S+ E ++ + + +T Sbjct: 370 DFEICSIILQKKAERSHIDMSEEVISFIAGNVNSSVRELEGAFKQVVGYCQIKNVPLTLE 429 Query: 234 LAAEVLKETQQCD 246 A + L + + D Sbjct: 430 NARDALADIIKVD 442 >gi|190890027|ref|YP_001976569.1| chromosomal replication initiator protein [Rhizobium etli CIAT 652] gi|190695306|gb|ACE89391.1| chromosomal replication initiator protein [Rhizobium etli CIAT 652] Length = 516 Score = 81.7 bits (201), Expect = 9e-14, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 78/207 (37%), Gaps = 28/207 (13%) Query: 33 PRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRV--VILVGPSGSGKSCLANIWSDK 87 P + D + S+ A+ I S R + + G GK+ L ++ Sbjct: 174 PLDSRFTFDTFVEGSSNRVALAAAKTIAEAGSGAVRFNPLFVHSTVGLGKTHLLQAIANA 233 Query: 88 S----RSTRFSNIAKS----LDSILIDTRKPVLLED----IDLLDFNDTQLF-------- 127 + R+ R + + I + L+D IDLL +D Q Sbjct: 234 AVQNPRALRVVYLTAEYFMWRFATAIRDNDALTLKDSLRNIDLLIIDDMQFLQGKMIQHE 293 Query: 128 --HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD-DDFLEKVIVK 184 H++N + +++ A P P + SRL+ +++ PD + LE + + Sbjct: 294 FCHLLNMLLDSAKQVVVAADRAPWELESLDPRVRSRLQGGVAIELDAPDYEMRLEILKRR 353 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVF 211 + A RQ ++ A ++Q + R++ Sbjct: 354 LAAARQEDPSLEIPADLLQHVARNITA 380 >gi|257464820|ref|ZP_05629191.1| chromosomal replication initiation protein [Actinobacillus minor 202] gi|257450480|gb|EEV24523.1| chromosomal replication initiation protein [Actinobacillus minor 202] Length = 446 Score = 81.7 bits (201), Expect = 9e-14, Method: Composition-based stats. Identities = 35/240 (14%), Positives = 85/240 (35%), Gaps = 35/240 (14%) Query: 35 CLGISRDDLLVHSAIEQAVRL----IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--- 87 D+ + + + A + + L +G GK+ L + + Sbjct: 109 DPTQRFDNFVQGRSNQLAKAVAQQVVSDLGESHCNPFSLYASTGLGKTHLLHAIGNALQK 168 Query: 88 ----------SRSTRFSNIAKSLDSILIDTRKP---------VLLEDIDLLDFN---DTQ 125 + +I K++++ + K ++++DI L + Sbjct: 169 KDPSLRVLYIHSERFYRDILKAINTNSNEADKLKKFYRSLDVLMIDDIQFLADKPKVQEE 228 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 H+ N++ + +++T+ FP + + SRL I P+ + ++ K Sbjct: 229 FLHLFNALFEQKKQIVLTSNVFPKNIERIDDAIKSRLSWGISSTIEPPELETRVAILRKK 288 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL-ALSR--GMGITRSLAAEVLKET 242 +R I ++ A Y++ + R+ +L ++ + A + IT E L++ Sbjct: 289 AEERGADISEE-ATYLMGQKLRTH--VRELEGALNRVIAWQKLTHRPITVDAVRETLRDM 345 >gi|241895507|ref|ZP_04782803.1| DNA-directed DNA replication initiator protein [Weissella paramesenteroides ATCC 33313] gi|241871253|gb|EER75004.1| DNA-directed DNA replication initiator protein [Weissella paramesenteroides ATCC 33313] Length = 467 Score = 81.3 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 32/258 (12%), Positives = 77/258 (29%), Gaps = 54/258 (20%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK---- 87 + + +A + + P +++ G G GK+ L +K Sbjct: 131 NPEFRFETFVSSDENREAYAVAQAVADKPGTQWNPLLIYGGVGLGKTHLMQAIGNKVLER 190 Query: 88 ---------SRSTRFSNIAKSLDSILIDTRK---------PVLLEDIDLLDFND---TQL 126 + ++ ++L +T ++++D+ L + + Sbjct: 191 TPNANVKFITTEDFINDFTEALRRGQKETEAFKREYRSTDLLMVDDVQFLAGKEKIQEEF 250 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 F+ N+I + + +++T+ P L +R I+ PD ++ Sbjct: 251 FNTFNAITRENHQIVLTSDKLPKEIPGLEMRLVTRFGQGYSANITKPDLPTRVAILRNKS 310 Query: 187 ADRQIFIDKKLAAYIVQRME---RSL--------------------VFAEKLVDKMDNLA 223 + I + I ++ R L A +++ M+ Sbjct: 311 DLENLSIPNDVIDEIAAAVDTNVRDLEGVFNQVVGKMRFSNVPVTVETARTILETMN--- 367 Query: 224 LSRGMGITRSLAAEVLKE 241 R IT + E + Sbjct: 368 FKRQRAITIPIIQEAVAN 385 >gi|114568555|ref|YP_755235.1| chromosomal replication initiator protein DnaA [Maricaulis maris MCS10] gi|114339017|gb|ABI64297.1| chromosomal replication initiator protein DnaA [Maricaulis maris MCS10] Length = 482 Score = 81.3 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 38/246 (15%), Positives = 78/246 (31%), Gaps = 39/246 (15%) Query: 33 PRCLGISRDDLLVHSAIEQAVR----LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS 88 P S D V A E A ++ + P V G G GK+ L + + + Sbjct: 141 PGDARFSFDSFRVGPANEVAAAAARTMVGASTP-PFNPVFFYGDYGVGKTHLLHAVASAA 199 Query: 89 RSTRFSNIAKSLDSILIDTR--------------------KPVLLEDIDLLDF---NDTQ 125 R+ A L + + +L++D+ + + + Sbjct: 200 RNGSRPRKALYLTAEEFLSGFVTAMKARDTISFKETVRGVDVLLIDDVHFIAGKPKTEDE 259 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 H I ++ + +++ + P + L S L + PD D +++ Sbjct: 260 FLHTIAALVAENKQVVLASHKPPAELQMQDERLRSLLTGGLSCPLGKPDLDLRRQILDCK 319 Query: 186 FADRQIF-----IDKKLAAYIVQRM---ERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237 A + + + ++ R+ R + V AL G +T + + Sbjct: 320 IAQATCHYPTFDVSEAVRDFLAARITSSPREMEGVLNNVIC--RTALI-GQPVTMEVVST 376 Query: 238 VLKETQ 243 L+E Sbjct: 377 ALRELS 382 >gi|223983629|ref|ZP_03633807.1| hypothetical protein HOLDEFILI_01088 [Holdemania filiformis DSM 12042] gi|223964396|gb|EEF68730.1| hypothetical protein HOLDEFILI_01088 [Holdemania filiformis DSM 12042] Length = 458 Score = 81.3 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 36/217 (16%), Positives = 74/217 (34%), Gaps = 31/217 (14%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIW---------- 84 + D+ +V + ++ + P + + + G SG GK+ L N Sbjct: 120 YTFDNFVVGGSNRESHSAALACAYNPGQFFNPLFIYGNSGLGKTHLLNAIGNYVSEHAPD 179 Query: 85 --------SDKSRSTRFSNIAKSLDSILIDTRKP--VLLEDIDLLDFND---TQLFHIIN 131 D + S + + +L++DI L + F+I N Sbjct: 180 KKVYYTTSEDFVNAVVNSIKNGQIQEFKEEMNDLDVLLVDDIQFLAGKEKSHETFFYIFN 239 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD----FLEKVIVKMFA 187 + + +T+ P L SR + V + P+ + L+ + K Sbjct: 240 ELVNNKKQICLTSDRHPTEIKGLEERLISRFSSGLSVGVDSPEFETSVAILKVKLEKQSV 299 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 D I ID + AYI + + E ++++ ++ Sbjct: 300 DPSI-IDDDVLAYIASNFSQDVRKLEGALNRLLFYSI 335 >gi|150019914|ref|YP_001305268.1| chromosomal replication initiator protein DnaA [Thermosipho melanesiensis BI429] gi|166215366|sp|A6LIY2|DNAA_THEM4 RecName: Full=Chromosomal replication initiator protein DnaA gi|149792435|gb|ABR29883.1| chromosomal replication initiator protein DnaA [Thermosipho melanesiensis BI429] Length = 437 Score = 81.3 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 71/199 (35%), Gaps = 34/199 (17%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS--RVVILVGPSGSGKSCLANI------- 83 P + ++L+V + A + P + L G GK+ LA Sbjct: 98 PLNPKYTFENLVVGEFNKFAYNVFLEASKNPGFYNPIFLYSGVGLGKTHLAQALGNYLLE 157 Query: 84 --------------WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID---LLDFNDTQL 126 + ++ S + ++++DI + T+L Sbjct: 158 TDPDMKVAYLTSEEFMNEMFSAIKNGNIDEFREKYRKKADILIIDDIQFLIGIKSAQTEL 217 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL----KAATVVKISLPDDDFLEKVI 182 FH N+IH+ +++ + P L D SR+ + +VKI P + L K+ Sbjct: 218 FHTFNTIHEAGKQIIICSDRTPQE----LKDFHSRMISRFQMGLLVKIEKPSSEDLFKIG 273 Query: 183 VKMFADRQIFIDKKLAAYI 201 K+ + + ID ++ YI Sbjct: 274 KKISEMKNVEIDDEIIKYI 292 >gi|38257685|sp|Q8UIH1|DNAA_AGRT5 RecName: Full=Chromosomal replication initiator protein DnaA Length = 487 Score = 81.3 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 35/207 (16%), Positives = 73/207 (35%), Gaps = 28/207 (13%) Query: 33 PRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRV--VILVGPSGSGKSCLANIWSDK 87 P + D + S+ A+ I + R + + G GK+ L ++ Sbjct: 142 PLDTRFTFDTFVEGSSNRVALAAAKTIAEAGAGAVRFNPLFIHAGVGLGKTHLLQAIANA 201 Query: 88 SRSTRFSNIAKSLDSILIDTRKPVLLED------------IDLLDFNDTQLF-------- 127 + + + L + R + D IDLL +D Q Sbjct: 202 AIDSPRNPRVVYLTAEYFMWRFATAIRDNDALTLKDTLRNIDLLVIDDMQFLQGKMIQHE 261 Query: 128 --HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 H++N + +++ A P P + SRL+ ++I PD D +++ + Sbjct: 262 FCHLLNMLLDSAKQVVVAADRAPWELESLDPRVRSRLQGGMAIEIEGPDYDMRYEMLNRR 321 Query: 186 F-ADRQIFIDKKLAAYIVQRMERSLVF 211 + RQ +++ I+ + +S+ Sbjct: 322 MGSARQDDPSFEISDEILTHVAKSVTA 348 >gi|294668100|ref|ZP_06733207.1| ribosomal subunit interface protein [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309808|gb|EFE51051.1| ribosomal subunit interface protein [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 172 Score = 81.3 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 45/117 (38%), Gaps = 6/117 (5%) Query: 108 RKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164 ++++DI + D + F++ N H L++T P L SR Sbjct: 19 YDLLIIDDIQFIKGKDRTMEEFFYLYNHFHTEKKQLILTCDVLPAKIEDMDDRLKSRFSW 78 Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---RSLVFAEKLVDK 218 +++ P+ + ++ K + + + A +I + + R L A K V+ Sbjct: 79 GLTLELEPPEFEMRVAILQKKAESAGVTLREDAAFFIAKHIRSNVRELEGAFKRVEA 135 >gi|239907716|ref|YP_002954457.1| chromosomal replication initiator protein DnaA [Desulfovibrio magneticus RS-1] gi|239797582|dbj|BAH76571.1| chromosomal replication initiator protein DnaA [Desulfovibrio magneticus RS-1] Length = 465 Score = 81.3 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 41/263 (15%), Positives = 91/263 (34%), Gaps = 40/263 (15%) Query: 16 QKNDQPKNKEEQLFFS--------FPRCLGISRDDLLVHSAIEQAVR----LIDSWPSWP 63 Q+ P+ L S D+ +V + E A + D S Sbjct: 104 QRPAGPRPVAAPLTLPVAPSAPPALADRFRFSYDEFVVGPSNEMAYAASKGICDL--SLS 161 Query: 64 SRVVILVGPSGSGKSCLANI---------------WSDKSRSTRFSNIAKSLDSILIDTR 108 + + + G GK+ L + S + + ++ + ++ Sbjct: 162 AEQLFISSAPGLGKTHLIQAMGRRILGGQPGRQPRVAYLSAEEFANRLVMAIKTKQVEQF 221 Query: 109 KPVLLEDIDLLDFNDTQLF--------HIIN---SIHQYDSSLLMTARTFPVSWGVCLPD 157 K E++D+L D F ++N +++ L+ T+ P Sbjct: 222 KAAFRENVDVLLLEDVHFFRDKPRIQDELLNTLKALNARGCRLVFTSSFLPKELSGLDSQ 281 Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 L SR+ + + I PD D +++ + A Q+ + ++++ + ++ + E + Sbjct: 282 LLSRINSGFLAVIDKPDLDMRRRILARKAAVHQVLLPEEVSTLLADKLPSDVRQLESCLQ 341 Query: 218 KMDNLALSRGMGITRSLAAEVLK 240 + A I+ LA +VL+ Sbjct: 342 NLVLKAKLLNCRISVDLAWDVLR 364 >gi|325291758|ref|YP_004277622.1| chromosomal replication initiation protein [Agrobacterium sp. H13-3] gi|325059611|gb|ADY63302.1| chromosomal replication initiation protein [Agrobacterium sp. H13-3] Length = 487 Score = 81.0 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 35/207 (16%), Positives = 73/207 (35%), Gaps = 28/207 (13%) Query: 33 PRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRV--VILVGPSGSGKSCLANIWSDK 87 P + D + S+ A+ I + R + + G GK+ L ++ Sbjct: 142 PLDTRFTFDTFVEGSSNRVALAAAKTIAEAGAGAVRFNPLFIHAGVGLGKTHLLQAIANA 201 Query: 88 SRSTRFSNIAKSLDSILIDTRKPVLLED------------IDLLDFNDTQLF-------- 127 + + + L + R + D IDLL +D Q Sbjct: 202 AIDSPRNPRVVYLTAEYFMWRFATAIRDNDALTLKDTLRNIDLLVIDDMQFLQGKMIQHE 261 Query: 128 --HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 H++N + +++ A P P + SRL+ ++I PD D +++ + Sbjct: 262 FCHLLNMLLDSAKQVVVAADRAPWELESLDPRVRSRLQGGMAIEIEGPDYDMRYEMLNRR 321 Query: 186 F-ADRQIFIDKKLAAYIVQRMERSLVF 211 + RQ +++ I+ + +S+ Sbjct: 322 MGSARQDDPSFEISDEILTHVAKSVTA 348 >gi|240950075|ref|ZP_04754377.1| chromosomal replication initiation protein [Actinobacillus minor NM305] gi|240295450|gb|EER46205.1| chromosomal replication initiation protein [Actinobacillus minor NM305] Length = 446 Score = 81.0 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 35/240 (14%), Positives = 85/240 (35%), Gaps = 35/240 (14%) Query: 35 CLGISRDDLLVHSAIEQAVRL----IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--- 87 D+ + + + A + + L +G GK+ L + + Sbjct: 109 DPTQRFDNFVQGRSNQLAKAVAQQVVSDLGESHCNPFSLYASTGLGKTHLLHAIGNALQK 168 Query: 88 ----------SRSTRFSNIAKSLDSILIDTRKP---------VLLEDIDLLDFN---DTQ 125 + +I K++++ + K ++++DI L + Sbjct: 169 KDPSLRVLYIHSERFYRDILKAINTNSNEADKLKKFYRSLDVLMIDDIQFLADKPKVQEE 228 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 H+ N++ + +++T+ FP + + SRL I P+ + ++ K Sbjct: 229 FLHLFNALFEQKKQIVLTSNVFPKNIERIDDAIKSRLSWGISSTIEPPELETRVAILRKK 288 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL-ALSR--GMGITRSLAAEVLKET 242 +R I ++ A Y++ + R+ +L ++ + A + IT E L++ Sbjct: 289 AEERGADISEE-ATYLMGQKLRTH--VRELEGALNRVIAWQKLTHRPITVDAVRETLRDM 345 >gi|282891915|ref|ZP_06300394.1| hypothetical protein pah_c200o074 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498175|gb|EFB40515.1| hypothetical protein pah_c200o074 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 448 Score = 81.0 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 34/238 (14%), Positives = 82/238 (34%), Gaps = 30/238 (12%) Query: 35 CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD---- 86 + + A+ + P ++ + G G GK+ + + Sbjct: 114 NENYRFETFIEGPTNMFVKSAAIGVATR-PGQSYNLLFIHGGVGLGKTHILHSIGHYVKD 172 Query: 87 ---------KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLF---------- 127 + +++ SL + +D K D+D+L +D Q Sbjct: 173 HHKKLRVQCITTEAFINDLVDSLRNKSVDKMKRFYRSDVDVLLVDDIQFLQNRLNFEEEF 232 Query: 128 -HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 H ++ +++T+ P + L +R++ V + +PD + ++ Sbjct: 233 CHTFETLINQKKQIVITSDKPPSQLKLS-ERLIARMEWGLVAHVGMPDLETRVAILQHKA 291 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 + + I +A +I + + ++ E V+++ + IT L + L+E Q Sbjct: 292 QQKGLEIPNNVAFFIAEHIYNNVRQLEGAVNRLCAHCKLLDLNITEELVEKTLREMMQ 349 >gi|319936678|ref|ZP_08011091.1| chromosomal replication initiator protein dnaA [Coprobacillus sp. 29_1] gi|319808235|gb|EFW04800.1| chromosomal replication initiator protein dnaA [Coprobacillus sp. 29_1] Length = 444 Score = 81.0 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 36/236 (15%), Positives = 80/236 (33%), Gaps = 31/236 (13%) Query: 38 ISRDDLLVHSAIEQAVRLIDSW---PSWPSRVVILVGPSGSGKSCLANIWSD-------- 86 + ++ +V ++ A + P + + SG GK+ L N + Sbjct: 105 LKFENFVVGNSNRIAQNASLAVAMKPGISYSPLFIHSNSGLGKTHLLNAIGNYAKSKDPF 164 Query: 87 -----KSRSTRFSNIAKSLDSILIDTRKP-------VLLEDIDLLDFNDTQ---LFHIIN 131 + + +SL + ID +L++DI + ++ F+I N Sbjct: 165 TKVLFTTSENFVNEYIQSLSNHTIDEFNYKYRHIDILLIDDIQFMATKESSSEIFFNIFN 224 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 S+ +++T+ P L SR + V I P+ + + ++ K + Sbjct: 225 SLISNKKQIVITSDKPPRDLRGMESRLVSRFASGLTVSIDTPEFETSKAILRKKIEIENV 284 Query: 192 FID--KKLAAYIVQRMERSLVFAEKLVDKMDNLAL--SRGMG-ITRSLAAEVLKET 242 +++ +I + E + ++ L I + A E +T Sbjct: 285 DYPITEEVLDFIASHFNTDVRELEGSLKRLLFYKLICEEKRDCIDLNFALEAFSDT 340 >gi|15604451|ref|NP_220969.1| chromosomal replication initiation protein [Rickettsia prowazekii str. Madrid E] gi|2494138|sp|Q59758|DNAA_RICPR RecName: Full=Chromosomal replication initiator protein DnaA gi|1305533|gb|AAA99160.1| DnaA protein [Rickettsia prowazekii] gi|3861145|emb|CAA15045.1| CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA (dnaA) [Rickettsia prowazekii] gi|292572223|gb|ADE30138.1| Chromosomal replication initiator protein DnaA [Rickettsia prowazekii Rp22] Length = 463 Score = 81.0 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 36/242 (14%), Positives = 84/242 (34%), Gaps = 32/242 (13%) Query: 35 CLGISRDDLLVHSAIEQAVRLI-----DSWPSWPSRVVILVGPSGSGKSCLANI--WSDK 87 + + D+ +V E A S + S + L G G GK+ L + W K Sbjct: 127 DVRFTFDNFVVGVPNELAYAAARAVAESSGAVFESNPLFLYGGVGLGKTHLMHAIGWYIK 186 Query: 88 SRSTRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQL 126 + R I S + + K + +++DI + D + Sbjct: 187 QNNPRRKVIYMSAEKFMYQFVKALRNKEVILFKEKFRSVDVLMIDDIQFICGKDSTQEEF 246 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH N++ + ++++ P + SRL V + + ++ Sbjct: 247 FHTFNTLIDNNRQMVISCDRSPSDLDNIEDRIKSRLGWGLVADVHSTTYELRLGILESKI 306 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR----SLAAEVLKET 242 + I K + ++ ++ ++ E ++K+ + IT ++ ++L+ Sbjct: 307 EQMNVKIPKDVINFLASKIVSNVRELEGALNKVIAHSNFTLKAITLENTQNILRDLLRSN 366 Query: 243 QQ 244 ++ Sbjct: 367 ER 368 >gi|332976004|gb|EGK12875.1| DNA-directed DNA replication initiator protein DnaA [Psychrobacter sp. 1501(2011)] Length = 469 Score = 81.0 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 81/234 (34%), Gaps = 27/234 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLI-----DSWPSWPSRVVILVGPSGSGKSCLANIWSDK-- 87 + + + + A + + + + L G SG GK+ L + + K Sbjct: 135 NPYFTFETFVSGKSNMLAYKACQELGKKQSQNRHNP-LFLYGASGLGKTHLMHSVAHKYL 193 Query: 88 ---------SRSTRFSNIAKSLDSILIDT-------RKPVLLEDIDLLDF---NDTQLFH 128 S + + +L + I+ ++++D+ +L + ++ Sbjct: 194 KIGKTFYYFSSEKFINQLVYALRNQKIEQFKRKIKRVDLLIIDDVHVLAGKNKSSSEFLS 253 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 + +++ + P SR + V I P+ + +++ K + Sbjct: 254 LFADFMVEGKQVILASDRHPSQMTEFDERFRSRFSSGLAVSIEPPEMETRMQILQKKASL 313 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + K+ A +I Q + ++ E ++++ A G I + LK+ Sbjct: 314 SGVELPKECALFIAQNVVSNVRRLEGALNQVVANANLTGNPIDLDMVQYALKDV 367 >gi|159184258|ref|NP_353356.2| chromosomal replication initiation protein [Agrobacterium tumefaciens str. C58] gi|159139585|gb|AAK86141.2| chromosomal replication initiator protein DnaA [Agrobacterium tumefaciens str. C58] Length = 520 Score = 81.0 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 35/207 (16%), Positives = 73/207 (35%), Gaps = 28/207 (13%) Query: 33 PRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRV--VILVGPSGSGKSCLANIWSDK 87 P + D + S+ A+ I + R + + G GK+ L ++ Sbjct: 175 PLDTRFTFDTFVEGSSNRVALAAAKTIAEAGAGAVRFNPLFIHAGVGLGKTHLLQAIANA 234 Query: 88 SRSTRFSNIAKSLDSILIDTRKPVLLED------------IDLLDFNDTQLF-------- 127 + + + L + R + D IDLL +D Q Sbjct: 235 AIDSPRNPRVVYLTAEYFMWRFATAIRDNDALTLKDTLRNIDLLVIDDMQFLQGKMIQHE 294 Query: 128 --HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 H++N + +++ A P P + SRL+ ++I PD D +++ + Sbjct: 295 FCHLLNMLLDSAKQVVVAADRAPWELESLDPRVRSRLQGGMAIEIEGPDYDMRYEMLNRR 354 Query: 186 F-ADRQIFIDKKLAAYIVQRMERSLVF 211 + RQ +++ I+ + +S+ Sbjct: 355 MGSARQDDPSFEISDEILTHVAKSVTA 381 >gi|254503894|ref|ZP_05116045.1| chromosomal replication initiator protein DnaA [Labrenzia alexandrii DFL-11] gi|222439965|gb|EEE46644.1| chromosomal replication initiator protein DnaA [Labrenzia alexandrii DFL-11] Length = 479 Score = 80.6 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 38/238 (15%), Positives = 80/238 (33%), Gaps = 28/238 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWP---SWPSRVVILVGPSGSGKSCLANIWS--DKSR 89 ++ D ++ A + ++ + +G GK+ L + + Sbjct: 142 NPKLTFDTFAEGTSNSLACAAVRQMAAGHDGSLGLLYIHSSTGIGKTHLLQAAATEARKG 201 Query: 90 STRFSNIAKS-----LDSILIDTRKPVL---LEDIDLLDFNDTQLFH----------IIN 131 R + ++ L L PVL ++ IDLL +D Q H + Sbjct: 202 GRRVAYLSAEFFMYHLVPALRTPAYPVLRQAMKSIDLLLIDDLQFLHGKQGHEEFGKTLE 261 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM-FADR- 189 + + ++M A P + R++ VV I D ++ K F+ R Sbjct: 262 MLMESPMKIIMAADRAPDEMSTLGSTVRQRIQTGEVVTIQATDYALRHDILKKRIFSARR 321 Query: 190 ---QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 + ++ YI + + S E ++++ +T LA + L + + Sbjct: 322 THPGFTVPDEVIDYIARYVISSARDLEGALNRLFAHNQLTKQPVTMQLAEKTLHDLVR 379 >gi|239904640|ref|YP_002951378.1| chromosomal replication initiator protein DnaA [Desulfovibrio magneticus RS-1] gi|239794503|dbj|BAH73492.1| chromosomal replication initiator protein DnaA [Desulfovibrio magneticus RS-1] Length = 446 Score = 80.6 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 71/200 (35%), Gaps = 24/200 (12%) Query: 31 SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWS-- 85 FP + + L + + L ++ GPSG+GK+ L + Sbjct: 107 DFPYGHRFTFETFLANEKNAFPLALAREVSRGGEVRYNPFLVCGPSGAGKTHLLRAMANA 166 Query: 86 ---DKSRSTRFSNIAKSLDSILIDTRKP-------------VLLE---DIDLLDFNDTQL 126 + S + + ++ D R+P + ++ D+ + +L Sbjct: 167 VAKSQPTSRIYFGSVADIQALYADARRPRPEIRAELSSHDWLFIDELTDVARAPDLEPEL 226 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 + N H ++ ++R S P SRL+ +V + PD + + ++ Sbjct: 227 IGMFNDFHDAGRQMVFSSRERAASCDFLDPTFRSRLEWGLMVHLKAPDLSIRARFVEQVS 286 Query: 187 ADRQIFIDKKLAAYIVQRME 206 D+++ + ++ + R E Sbjct: 287 KDKRLGLSREQVLTLAGRFE 306 >gi|302543965|ref|ZP_07296307.1| DnaA protein [Streptomyces hygroscopicus ATCC 53653] gi|302461583|gb|EFL24676.1| DnaA protein [Streptomyces himastatinicus ATCC 53653] Length = 531 Score = 80.6 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 36/213 (16%), Positives = 77/213 (36%), Gaps = 30/213 (14%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90 D ++ ++ A + P+ + + G SG GK+ L + +RS Sbjct: 314 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSL 373 Query: 91 -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128 R+ + + + + R +L++DI L + + FH Sbjct: 374 YPGTRVRYVSSEEFTNEFINSIRDGKADAFRKRYRDMDILLVDDIQFLASKESTQEEFFH 433 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 N++H + +++++ P V L D L +R + + + P+ + ++ K Sbjct: 434 TFNTLHNANKQIVLSSDRPPKQL-VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 492 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 Q+ A V R+ S +L + D Sbjct: 493 QEQLNAPPGGAR--VHRLPESTRNIRELEGRAD 523 >gi|302381117|ref|YP_003816940.1| chromosomal replication initiator protein DnaA [Brevundimonas subvibrioides ATCC 15264] gi|302191745|gb|ADK99316.1| chromosomal replication initiator protein DnaA [Brevundimonas subvibrioides ATCC 15264] Length = 478 Score = 80.6 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 34/221 (15%), Positives = 72/221 (32%), Gaps = 32/221 (14%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRST 91 ++ D + A+ + SW + GP G GK+ L N + +++ Sbjct: 137 QERLTFDSFVEGQGNAFALAIARQTASWADGHFNPIFFCGPYGYGKTHLLNAIAWEAQRL 196 Query: 92 RFSNIAKSLDSIL--------------------IDTRKPVLLEDIDLLDF---NDTQLFH 128 R L + + + +LL+D+ + +L Sbjct: 197 RPDAKVVYLTAERFLSTFVKAMQDRSTAAFKESLRSADMLLLDDVQFVGGKASTQEELLS 256 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM--- 185 + ++ + ++++A P++ P L S L A + D V Sbjct: 257 TLTALIEDGKRIVLSADRPPMALTEVEPRLRSHLAAGLTCPVEPADRSLKIAVAQNRIAA 316 Query: 186 FADRQIFIDK---KLAAYIVQRMERSLVFAEKLVDKMDNLA 223 FA + + ++ +V R S+ E V+ + A Sbjct: 317 FARLGVVNGEAQREVLEQLVDRTPGSVRELEGAVNTLAAAA 357 >gi|242281238|ref|YP_002993367.1| chromosomal replication initiator DnaA domain protein [Desulfovibrio salexigens DSM 2638] gi|242124132|gb|ACS81828.1| Chromosomal replication initiator DnaA domain protein [Desulfovibrio salexigens DSM 2638] Length = 434 Score = 80.6 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 34/216 (15%), Positives = 78/216 (36%), Gaps = 28/216 (12%) Query: 30 FSFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 FP + ++ L+ + + + ++ G SGSGKS L ++ Sbjct: 93 IDFPFGHNFTFENFLIGKKNYFPLASAKEVARVENISFNPFVICGKSGSGKSHLLKAIAN 152 Query: 87 KSR--------------------STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND--- 123 + S RF + D + L+D+ + + Sbjct: 153 EVCKKVDREKVFLGNVDDVQNIYSVRFGGDIMRARNYFFDF-EYFFLDDLRQIKKYEHLQ 211 Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 +L I N+ +++ ++ + S+ +L SRL+ +V + PD + K + Sbjct: 212 QELISIFNNFYEHGKQMVFSCTDKLASYDFLNKNLKSRLEWGLIVTLKRPDLEIRAKYVQ 271 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 K +++ + K + QR + + + ++ K+ Sbjct: 272 KQCKLKKLPLSKDQILTLSQRFQ-DFRYLQGIIIKL 306 >gi|301321197|gb|ADK69840.1| chromosomal replication initiator protein DnaA [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 399 Score = 80.2 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 32/234 (13%), Positives = 78/234 (33%), Gaps = 32/234 (13%) Query: 40 RDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSD--KSRSTRFS 94 ++ ++ ++ EQA + + P + + G SG GK+ L + +S + Sbjct: 63 FENFVIGASNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLK 122 Query: 95 NIAKSLDSILIDT--------------------RKPVLLEDIDLLDFNDTQ---LFHIIN 131 S D ++++D+ L + + F I N Sbjct: 123 VSYMSGDEFARKAVDILQKTHKEIEQFKNKICQNDVLIIDDVQFLSYKEKTNEIFFTIFN 182 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 + + D L ++ P L +R + I D+ +I K ++ I Sbjct: 183 NFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNI 242 Query: 192 F--IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS--RGMGITRSLAAEVLKE 241 + + +I + + V +++ + IT + +++ ++ Sbjct: 243 KSEVTSEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRD 296 >gi|61212611|sp|Q6MUM7|DNAA_MYCMS RecName: Full=Chromosomal replication initiator protein DnaA Length = 450 Score = 80.2 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 32/234 (13%), Positives = 78/234 (33%), Gaps = 32/234 (13%) Query: 40 RDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSD--KSRSTRFS 94 ++ ++ ++ EQA + + P + + G SG GK+ L + +S + Sbjct: 114 FENFVIGASNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLK 173 Query: 95 NIAKSLDSILIDT--------------------RKPVLLEDIDLLDFNDTQ---LFHIIN 131 S D ++++D+ L + + F I N Sbjct: 174 VSYMSGDEFARKAVDILQKTHKEIEQFKNKICQNDVLIIDDVQFLSYKEKTNEIFFTIFN 233 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 + + D L ++ P L +R + I D+ +I K ++ I Sbjct: 234 NFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNI 293 Query: 192 F--IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS--RGMGITRSLAAEVLKE 241 + + +I + + V +++ + IT + +++ ++ Sbjct: 294 KSEVTSEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRD 347 >gi|42560561|ref|NP_975012.1| chromosomal replication initiation protein [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492057|emb|CAE76654.1| Chromosomal replication initiator protein DnaA [Mycoplasma mycoides subsp. mycoides SC str. PG1] Length = 479 Score = 80.2 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 32/234 (13%), Positives = 78/234 (33%), Gaps = 32/234 (13%) Query: 40 RDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSD--KSRSTRFS 94 ++ ++ ++ EQA + + P + + G SG GK+ L + +S + Sbjct: 143 FENFVIGASNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLK 202 Query: 95 NIAKSLDSILIDT--------------------RKPVLLEDIDLLDFNDTQ---LFHIIN 131 S D ++++D+ L + + F I N Sbjct: 203 VSYMSGDEFARKAVDILQKTHKEIEQFKNKICQNDVLIIDDVQFLSYKEKTNEIFFTIFN 262 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 + + D L ++ P L +R + I D+ +I K ++ I Sbjct: 263 NFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNI 322 Query: 192 F--IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS--RGMGITRSLAAEVLKE 241 + + +I + + V +++ + IT + +++ ++ Sbjct: 323 KSEVTSEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRD 376 >gi|118589254|ref|ZP_01546660.1| chromosomal replication initiation protein [Stappia aggregata IAM 12614] gi|118437954|gb|EAV44589.1| chromosomal replication initiation protein [Stappia aggregata IAM 12614] Length = 491 Score = 80.2 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 39/238 (16%), Positives = 79/238 (33%), Gaps = 28/238 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVV---ILVGPSGSGKSCLANIWSDKSRST 91 ++ D ++ A + + + + +G GK+ L + ++R T Sbjct: 154 NPKLTFDTFAEGASNSLACAAVRQMAAGHQGTLDMLYIHSATGIGKTHLLQAAASEARKT 213 Query: 92 RFSNIAKSLD----SILIDTRKPV------LLEDIDLLDFNDTQLFH----------IIN 131 S + ++ R P + IDLL +D Q H + Sbjct: 214 GRQVAYLSAEFFMYHLVPALRTPAFPILRQAMRSIDLLLVDDLQFLHGKQAAEEFSKTLE 273 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM--FADR 189 + + S ++M A L R++ VV I D ++ K A R Sbjct: 274 LLMESPSQIIMAADRPAEDLDTLGDALRFRIQKGEVVGIQATDYALRHDILKKRINAARR 333 Query: 190 ---QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 + + +A YI + + S E ++++ +T LA + L + + Sbjct: 334 THPGFSVPEDVADYIARYVIASARDLEGALNRLFAHNQLTKQPVTMDLAEKTLHDLVR 391 >gi|83319700|ref|YP_424001.1| chromosomal replication initiation protein [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|118707|sp|P24116|DNAA_MYCCT RecName: Full=Chromosomal replication initiator protein DnaA gi|216795|dbj|BAA14415.1| DnaA protein [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283586|gb|ABC01518.1| chromosomal replication initiator protein DnaA [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 450 Score = 80.2 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 33/234 (14%), Positives = 78/234 (33%), Gaps = 32/234 (13%) Query: 40 RDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSD--KSRSTRFS 94 ++ ++ S+ EQA + + P + + G SG GK+ L + +S + Sbjct: 114 FENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLK 173 Query: 95 NIAKSLDSILIDT--------------------RKPVLLEDIDLLDFNDTQ---LFHIIN 131 S D ++++D+ L + + F I N Sbjct: 174 VSYMSGDEFARKAVDILQKTHKEIEQFKNEVCQNDVLIIDDVQFLSYKEKTNEIFFTIFN 233 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 + + D L ++ P L +R + I D+ +I K ++ I Sbjct: 234 NFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNI 293 Query: 192 F--IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS--RGMGITRSLAAEVLKE 241 + + +I + + V +++ + IT + +++ ++ Sbjct: 294 KTEVTNEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKVITIEIISDLFRD 347 >gi|269216526|ref|ZP_06160380.1| DNA replication initiator protein, ATPase [Slackia exigua ATCC 700122] gi|269130055|gb|EEZ61137.1| DNA replication initiator protein, ATPase [Slackia exigua ATCC 700122] Length = 516 Score = 79.8 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 37/246 (15%), Positives = 82/246 (33%), Gaps = 42/246 (17%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPS-----RVVILVGPSGSGKSCLANIWSDKSRST 91 ++ ++ ++ + A + + P + + G SG GK+ L + +T Sbjct: 168 SLTFENYVIGDSNRLAYSMALAVAEQPGVKPMLNPLFIYGNSGLGKTHLLRAIQNYINAT 227 Query: 92 R--FSNIAKSLDSILIDTRKPVLLED---------------IDLLDFNDTQ--------- 125 + L D V D D+L +D Q Sbjct: 228 YPTMDAVYVDSSEFLNDYTAAVASHDKDKKSYQDFQNRYWNADVLIIDDVQFFQGKSATV 287 Query: 126 --LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 +F ++N + ++++A P + V + SR I P+ + +I Sbjct: 288 DIVFQLLNKLIDRGKQVVLSADRAPKTIDVD-ERMQSRFNQGGTFDIQPPEVETKLGIIK 346 Query: 184 KMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG-ITRSLA 235 A+ + I K + YI + ++ + V ++ + + +G + A Sbjct: 347 SFIAEHRRASGEDTASIPKDVQMYIAENSSSNVRELKSAVTRVLSEIIYKGRKDFSVEDA 406 Query: 236 AEVLKE 241 E+L + Sbjct: 407 QELLAD 412 >gi|299133399|ref|ZP_07026594.1| chromosomal replication initiator protein DnaA [Afipia sp. 1NLS2] gi|298593536|gb|EFI53736.1| chromosomal replication initiator protein DnaA [Afipia sp. 1NLS2] Length = 477 Score = 79.8 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 24/245 (9%), Positives = 76/245 (31%), Gaps = 33/245 (13%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWP------SRVVILVGPSGSGKSCLANI--W 84 P ++ + + A+ + + G GK+ L W Sbjct: 135 PLDPRLTFATFVGGRSNTLALAAARQVAEGRRGDNVMFNPLYIHAGVGLGKTHLLQAVTW 194 Query: 85 SDKSR-----------------STRFSNIAKSLDSILIDTRKPVLLEDIDLLDF--NDTQ 125 + S + + A + + ++++D+ L + Sbjct: 195 AGNSADRKVLYLTAEKFMYGFVAALKTQTALAFKEA-LRGIDVLVIDDLQFLQGKSTQAE 253 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 H +N++ +++ A P + SRL VV++ ++ +++ Sbjct: 254 FCHTLNALIDAGRQVVIAADRPPSDLESLDDRVRSRLAGGLVVEMGALGEELRLEILKSR 313 Query: 186 FADRQIF-----IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + + + Y+ + + + E ++++ + +T +A ++ Sbjct: 314 VSAARAHHASFDVPLPVLDYLAKAITHNGRDLEGAINRLLAHSKLNSTPVTLEMAEREVR 373 Query: 241 ETQQC 245 + + Sbjct: 374 DLIRP 378 >gi|225164453|ref|ZP_03726710.1| chromosomal replication initiator protein DnaA [Opitutaceae bacterium TAV2] gi|224800923|gb|EEG19262.1| chromosomal replication initiator protein DnaA [Opitutaceae bacterium TAV2] Length = 354 Score = 79.8 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 28/199 (14%), Positives = 69/199 (34%), Gaps = 23/199 (11%) Query: 67 VILVGPSGSGKSCLANIWSD-------KSRSTRFSNIAKSLDSILIDTRKPVL------- 112 + + G +G GK+ L + ++R S + + I ++ Sbjct: 54 LFIYGETGLGKTHLMHAIGHTILLNRPEARVAYLSTEKFTNEFIQALQENSLVKFRQRYR 113 Query: 113 ------LEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 L+D+ L + + FH N + + +++++ L SR + Sbjct: 114 SVDVLLLDDVQFLAGKERIQEEFFHTFNELFESQKQIVLSSDRRASEIQKLEARLVSRFE 173 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 I PD + ++ A + + + +I Q + +++ E + K+ + Sbjct: 174 WGLPADIQAPDYETRLAILRTKAATLKFDLPHDVGVFIAQNIAKNIRRLEGALLKVASYG 233 Query: 224 LSRGMGITRSLAAEVLKET 242 G + + +LK+ Sbjct: 234 SLTGRAVDIATVENLLKDV 252 >gi|303327619|ref|ZP_07358060.1| ATPase involved in DNA replication initiation [Desulfovibrio sp. 3_1_syn3] gi|302862559|gb|EFL85492.1| ATPase involved in DNA replication initiation [Desulfovibrio sp. 3_1_syn3] Length = 482 Score = 79.8 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 39/258 (15%), Positives = 77/258 (29%), Gaps = 36/258 (13%) Query: 24 KEEQLFFSFP-RCLGISRD--------DLLVHSAIEQAVRLIDSW--PSWPSRVVILVGP 72 Q P R+ D +V + AV R + + Sbjct: 123 PRRQASLPMPAVAPAFRREAAWRYRFEDFVVGPSNSVAVAAAQDVCRSGGDVRTLFVNSA 182 Query: 73 SGSGKSCLANIW-----SDKSRSTRFSNIAKSLDSILIDTRKP---------------VL 112 SG GK+ LA + S + A+ S + + +L Sbjct: 183 SGLGKTHLAQAVGQSLSRNSSGARVAYLTAEEFASRFVAALRSHDVEAFKGRLRELDVLL 242 Query: 113 LEDIDLLDFNDT----QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168 LED+ + L + N ++ T+ P L S + + Sbjct: 243 LEDVHFFQGKEKMQDMALAVVKNL-QARGGRVIFTSSFSPRELQRVDSQLVSHFCSGILT 301 Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228 + PD++ ++ + Q+ + + + R+ + E ++ + A Sbjct: 302 NMGRPDEEMRRHILTRKARSFQVLLPDSVCDLLASRLRGDVRQMESCLNSLIFKARLLNC 361 Query: 229 GITRSLAAEVLKETQQCD 246 G+ LA EVL + + Sbjct: 362 GLNLDLALEVLNQYAGVE 379 >gi|332702338|ref|ZP_08422426.1| Chromosomal replication initiator, DnaA domain protein [Desulfovibrio africanus str. Walvis Bay] gi|332552487|gb|EGJ49531.1| Chromosomal replication initiator, DnaA domain protein [Desulfovibrio africanus str. Walvis Bay] Length = 436 Score = 79.4 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 36/221 (16%), Positives = 82/221 (37%), Gaps = 27/221 (12%) Query: 24 KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWP---SWPSRVVILVGPSGSGKSCL 80 K Q +FP + D+ LV+ + ++ G +GSGK+ L Sbjct: 90 KPAQ-SVNFPFGHQFTLDNFLVNRKNSFPIASAREVATKGGSTYSPFVICGEAGSGKTHL 148 Query: 81 ANIWSDK-----SRSTRFSNIAKSLDSIL--------------IDTRKPVLLEDIDLLDF 121 +++ FS + ++ + + + ++D+ + Sbjct: 149 LRAVANEISKSCGIERIFSGSVEDMNQLYASRFRNDPHKARNHLGAFDYLFVDDLQQIRN 208 Query: 122 N---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178 + +L I N++H ++ + S+ P L SRL+ +V + PD D Sbjct: 209 HPDLQQELILIFNALHDRRKQMVFSCTGRLSSYDFLDPKLKSRLEWGLIVHLEAPDLDIR 268 Query: 179 EKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 + I + R++ ++++ + QR F + ++ K+ Sbjct: 269 VRYIQQQLKLRKLQLNQEQILTLSQRFT-DFRFLQGILLKL 308 >gi|182677005|ref|YP_001831151.1| chromosomal replication initiation protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182632888|gb|ACB93662.1| chromosomal replication initiator protein DnaA [Beijerinckia indica subsp. indica ATCC 9039] Length = 510 Score = 79.4 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 33/245 (13%), Positives = 84/245 (34%), Gaps = 33/245 (13%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDS----WPSWP--SRVVILVGPSGSGKSCLANIWSD 86 P +S + LV + + A P+ P S + L G GK+ L + Sbjct: 168 PLDRRLSFANFLVGRSNQLAFAAAKGIAAADPNDPLLSNPLYLHASVGLGKTHLLQAIAH 227 Query: 87 KSR-------------------STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DTQ 125 + + + A + + T ++++D+ L + Sbjct: 228 DAMIMKRRVIYLTAEKFMYGFVAALKAQTAIAFKEK-LRTIDILVIDDVQFLQGKSIQQE 286 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 H +N++ +++ A P + SRL V++ D+ K++ Sbjct: 287 FCHTLNALIDAGRQIVIAADRPPADLESLDERVRSRLAGGLCVEMGALDEALRIKILETR 346 Query: 186 FADRQIF-----IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 ++ + + + AY+ ++ + + V+++ A + +T +A ++ Sbjct: 347 IGAAKLVHPYFDVPQPVIAYVASVIQTNGRDLDGAVNRLLAHASLTSVPLTIEIAETAIR 406 Query: 241 ETQQC 245 + + Sbjct: 407 DLVRT 411 >gi|148927271|ref|ZP_01810841.1| Chromosomal replication initiator, DnaA C-terminal domain [candidate division TM7 genomosp. GTL1] gi|147887330|gb|EDK72784.1| Chromosomal replication initiator, DnaA C-terminal domain [candidate division TM7 genomosp. GTL1] Length = 249 Score = 79.4 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 48/109 (44%), Gaps = 2/109 (1%) Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 + FH N +HQ + +++++ P S L SR + + I +PD + +I Sbjct: 29 QEEFFHTFNVLHQANKQIIISSDKPPRSIPTLTERLRSRFEWGMAIDIQIPDFETRSAII 88 Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231 + I + ++ Y+ ++ ++ E ++++ LA G+T Sbjct: 89 ETKASQAGIELPRETVEYMASNIKTNIRELEGALNQL--LAFCEMRGVT 135 >gi|291520346|emb|CBK75567.1| ATPase involved in DNA replication initiation [Butyrivibrio fibrisolvens 16/4] Length = 238 Score = 79.0 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 24/190 (12%), Positives = 63/190 (33%), Gaps = 32/190 (16%) Query: 35 CLGISRDDLLVHSAIE----QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS----- 85 + D+ +V A+ + +S + + + + G G GK+ L Sbjct: 32 NPKFTFDNFVVGRNNRFAQTAALAVAESPGEFYNP-LYIYGGPGLGKTHLMQAIGNYIEN 90 Query: 86 DKSRSTRFSNIAKSLDSILID-------------------TRKPVLLEDIDLLDFND--- 123 + ++ + +I+ T ++++DI + + Sbjct: 91 QNPNTHILYVTSEEFTNEVIENLRTNNNASAMQRFRDKYRTVDVLMVDDIQFIIGKESTQ 150 Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 + FH N++H +++++ P SR + I PD + ++ Sbjct: 151 EEFFHTFNALHAMGKQIVISSDKPPKDMETLDDRFKSRFDMGLMADIGYPDYETRMAILN 210 Query: 184 KMFADRQIFI 193 K ++ + + Sbjct: 211 KKIEEKTLIL 220 >gi|182411827|ref|YP_001816893.1| chromosomal replication initiator protein DnaA [Opitutus terrae PB90-1] gi|177839041|gb|ACB73293.1| chromosomal replication initiator protein DnaA [Opitutus terrae PB90-1] Length = 467 Score = 79.0 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 34/240 (14%), Positives = 79/240 (32%), Gaps = 30/240 (12%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWP---SRVVILVGPSGSGKSCLANIWSDK---- 87 + + +V S + A + P + + G +G GK+ L + Sbjct: 132 NPRNTFETFVVGSNNQMAHAAALAVAQAPAQAYNPLFIYGDTGLGKTHLMHAIGHAILRN 191 Query: 88 ---SRSTRFSNIAKSLDSILIDTRKPV-------------LLEDIDLLDFND---TQLFH 128 +R S + + I + L++D+ L + + FH Sbjct: 192 NPDARVAYLSTEKFTNEFIQALQENSLTKFRQRYRHVDVLLIDDVQFLAGKERIQEEFFH 251 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 N + + +++++ L SR + I PD + ++ A Sbjct: 252 TFNDLFESGKQVVLSSDRRASEIQKLESRLVSRFEWGLPADIQAPDFETRLAILRSKAAC 311 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS----LAAEVLKETQQ 244 + + + +I Q + +++ E + K+ + + + + L +VL E Q Sbjct: 312 MKFDLPAPILNFIAQNISKNIRRLEGALIKVASYSALTSKPLDLATTEMLLQDVLMEQAQ 371 >gi|218660627|ref|ZP_03516557.1| chromosomal replication initiation protein [Rhizobium etli IE4771] Length = 321 Score = 79.0 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 78/207 (37%), Gaps = 28/207 (13%) Query: 33 PRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRV--VILVGPSGSGKSCLANIWSDK 87 P + D + S+ A+ I S R + + G GK+ L ++ Sbjct: 25 PLDSRFTFDTFVEGSSNRVALAAAKTIAEAGSGAVRFNPLFVHSTVGLGKTHLLQAIANA 84 Query: 88 S----RSTRFSNIAKS----LDSILIDTRKPVLLED----IDLLDFNDTQLF-------- 127 + R+ R + + I + L+D IDLL +D Q Sbjct: 85 AVQNPRALRVVYLTAEYFMWRFATAIRDNDALTLKDSLRNIDLLIIDDMQFLQGKMIQHE 144 Query: 128 --HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD-DDFLEKVIVK 184 H++N + +++ A P P + SRL+ +++ PD + LE + + Sbjct: 145 FCHLLNMLLDSAKQVVVAADRAPWELESLDPRVRSRLQGGVAIELDAPDYEMRLEILKRR 204 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVF 211 + A RQ ++ A ++Q + R++ Sbjct: 205 LAAARQEDPSLEIPADLLQHVARNITA 231 >gi|209883691|ref|YP_002287548.1| chromosomal replication initiator protein DnaA [Oligotropha carboxidovorans OM5] gi|209871887|gb|ACI91683.1| chromosomal replication initiator protein DnaA [Oligotropha carboxidovorans OM5] Length = 477 Score = 79.0 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 23/245 (9%), Positives = 75/245 (30%), Gaps = 33/245 (13%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWP------SRVVILVGPSGSGKSCLANI--W 84 P ++ + + A+ + + G GK+ L W Sbjct: 135 PLDPRLTFATFVGGRSNTLALAAARQVAEGRRGDNVMFNPLYIHAGVGLGKTHLLQAVTW 194 Query: 85 SDKSR-----------------STRFSNIAKSLDSILIDTRKPVLLEDIDLLDF--NDTQ 125 + + + + A + + ++++D+ L + Sbjct: 195 AGNTSERKVLYLTAEKFMYGFVAALKTQTALAFKEA-LRGIDVLVIDDLQFLQGKSTQAE 253 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK- 184 H +N++ +++ A P + SRL VV++ ++ +++ Sbjct: 254 FCHTLNALIDAGRQVVIAADRPPSDLESLDDRVRSRLAGGLVVEMGALGEELRLEILKSR 313 Query: 185 ----MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + + Y+ + + + E ++++ + +T +A ++ Sbjct: 314 VTAARAHHASFEVPEPVLEYLAKAITHNGRDLEGAINRLLAHSKLNATSVTLEMAEREVR 373 Query: 241 ETQQC 245 + + Sbjct: 374 DLIRP 378 >gi|162446889|ref|YP_001620021.1| chromosomal replication initiator protein [Acholeplasma laidlawii PG-8A] gi|189044629|sp|A9NE65|DNAA_ACHLI RecName: Full=Chromosomal replication initiator protein DnaA gi|161984996|gb|ABX80645.1| chromosomal replication initiator protein [Acholeplasma laidlawii PG-8A] Length = 452 Score = 79.0 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 86/232 (37%), Gaps = 30/232 (12%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPSRVV---ILVGPSGSGKSCLANIWSD-------K 87 + D +V + A R+ P V + G G GK+ L + + Sbjct: 108 YTFDSFVVGKSNMFAFRMAMKVADQPGAVANPFYIFGDVGLGKTHLMQAIGNYILDNDVE 167 Query: 88 SRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLD---FNDTQLFHI 129 R D + + +R +L++DI ++ + F + Sbjct: 168 KRILYVKADNFIEDFVSLLSRNKNKTEEFNAKYKDIDVILVDDIQIMANASKTQMEFFKL 227 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA-- 187 + ++ + +++T+ +P L +R +A V I +P+ + ++ + A Sbjct: 228 FDYLYLNNKQIVITSDKPASQLTNIMPRLTTRFEAGLSVDIQIPELEHRISILKRKTATL 287 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 D + + + + +I + ++ E + ++ + A + + IT ++ E L Sbjct: 288 DANLEVSEDILTFIASQFAANIREMEGALIRLISYAQTFNLEITMNVVEEAL 339 >gi|282852314|ref|ZP_06261656.1| putative chromosomal replication initiator protein DnaA [Lactobacillus gasseri 224-1] gi|282556056|gb|EFB61676.1| putative chromosomal replication initiator protein DnaA [Lactobacillus gasseri 224-1] Length = 220 Score = 79.0 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 46/118 (38%) Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + FH +++ ++MT+ P L SR V+I+ PD + ++ K Sbjct: 1 EFFHTFETLYNDQKQIVMTSDRLPTEIPELSERLVSRFAWGLQVEITPPDLETRIAILRK 60 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + ID YI +++ ++ E + K+ A I LA E L + Sbjct: 61 KAETDGLAIDDSTLDYIASQVDTNIRELEGALVKVQAHATIEREDINVDLAKEALADL 118 >gi|78357363|ref|YP_388812.1| DnaA family protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|123754872|sp|Q30YX9|DNAA_DESDG RecName: Full=Chromosomal replication initiator protein DnaA gi|78219768|gb|ABB39117.1| DnaA family protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 461 Score = 79.0 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 35/264 (13%), Positives = 86/264 (32%), Gaps = 36/264 (13%) Query: 12 VPDKQKNDQPK-NKEEQLFFSFPRCLGI--------SRDDLLVHSAIEQAVRLIDS--WP 60 VP +++ + + EQ+ S D+ +V + + A Sbjct: 89 VPAQKRPAAARTSGAEQMGLPLHYASRSADSIKWMHSFDEFVVGPSNQMAFAASQDICQQ 148 Query: 61 SWPSRVVILVGPSGSGKSCLANIW-------------------SDKSRSTRFSNIAKSLD 101 S+ S + L G GK+ L + +++ + + Sbjct: 149 SFRSDTLFLSSDPGLGKTHLLHAVGQQLCNISNRTLPRVEYLTAEEFATRLICALKAKEV 208 Query: 102 SILIDTRKPV---LLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 + V LLED+ L ++ + ++ + +L ++ P Sbjct: 209 DRFKARYRDVDVLLLEDVHFLQGKQRMQDEVLSTVKALQSRGAKVLFSSSFAPKDLNDLD 268 Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215 L SR + + I P + ++++ + + + +++A + + + E Sbjct: 269 SQLTSRFCSGLLAVIEKPTFETRKQILREKARLHHVQLPEQVADLLADNIRADVRQIESC 328 Query: 216 VDKMDNLALSRGMGITRSLAAEVL 239 + + A IT +A E++ Sbjct: 329 LRNLLLKARLLNQQITMDMAWEII 352 >gi|320352769|ref|YP_004194108.1| chromosomal replication initiator protein DnaA [Desulfobulbus propionicus DSM 2032] gi|320121271|gb|ADW16817.1| chromosomal replication initiator protein DnaA [Desulfobulbus propionicus DSM 2032] Length = 439 Score = 79.0 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 32/231 (13%), Positives = 76/231 (32%), Gaps = 27/231 (11%) Query: 36 LGISRDDLLVHSAIEQAVRLIDSWPSWP---SRVVILVGPSGSGKSCLANIWSDKS---- 88 + + +V + A + + + + +G GKS L + Sbjct: 107 PAFTFEQFMVGESNLLARSACQALATGDATFGNCLFMNSTTGLGKSHLTQAVVHQVLRSA 166 Query: 89 --------RSTRFSN---------IAKSLDSILIDTRKPVLLEDIDLLDF---NDTQLFH 128 + +FS + I+ +L+ED+ L +L Sbjct: 167 PSTRLHYLTAQQFSAEMVKGIRTNAMEQFSKKYINDCDMLLVEDVHTLTGKTKTQEELNT 226 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 I++ + + +++T+ P D SR+ + V I PD + ++I Sbjct: 227 ILDYLIKSGRRVILTSALPPTKLAGIDDDFRSRMTSGLVTGIESPDYETRARIIRHKLQM 286 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + D+ L ++ + ++ + E + + + G + EV+ Sbjct: 287 HGLGADEDLVGFMAESLQGDVRRMESAIIGIKAKSCLLGAPPDLGMVREVV 337 >gi|78355048|ref|YP_386497.1| chromosomal replication initiator protein DnaA [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217453|gb|ABB36802.1| chromosomal replication initiator protein DnaA [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 436 Score = 79.0 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 37/252 (14%), Positives = 80/252 (31%), Gaps = 42/252 (16%) Query: 20 QPKNKEEQLFFSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGS 75 P ++L F R + + + + A L +L GP+GS Sbjct: 87 PPAAVSKKLSAPFGRE--YTFETFISNKRNFFPVASARELARQEEEIRYNPFVLCGPAGS 144 Query: 76 GKSCLANIWSDKSRSTRFS--------NIAKSLDSILIDTRKPVLLEDIDLLDF------ 121 GK+ L +++ T + + +L S + + + + Sbjct: 145 GKTHLLRAIANELSKTVYKKHIFISTIDDLGTLFSNNGSGDPAQVRQQLSACHYLLLDDL 204 Query: 122 ----------NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 ++ + + NS + ++ T L SRL+ +V + Sbjct: 205 HRLREQPQLQDELTV--LFNSFYDRQKQMVFTCPGKLSELDFLETGLRSRLEWGLIVTMK 262 Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231 PD + L I + ++ + K+ + QR R + +++++ Sbjct: 263 PPDLEILVTFIQRQCKLHKLQLAKEHVFTLAQRF-RDFRHLQGVLNRLTAY--------- 312 Query: 232 RSLAAEVLKETQ 243 R L L +T Sbjct: 313 RDLVNRTLADTD 324 >gi|313664891|ref|YP_004046762.1| chromosomal replication initiator protein DnaA [Mycoplasma leachii PG50] gi|312949390|gb|ADR23986.1| chromosomal replication initiator protein DnaA [Mycoplasma leachii PG50] Length = 450 Score = 79.0 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 79/234 (33%), Gaps = 32/234 (13%) Query: 40 RDDLLVHSAIEQA---VRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD--KSRSTRFS 94 ++ ++ S+ EQA V+ + P + + G SG GK+ L + +S + Sbjct: 114 FENFVIGSSNEQAFIAVQTVSKSPGVSYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLK 173 Query: 95 NIAKSLDSILIDT--------------------RKPVLLEDIDLLDFNDTQ---LFHIIN 131 S D ++++D+ L + + F I N Sbjct: 174 VSYMSGDEFARKAVDILQKTHKEIEQFKNEVCQNDVLIIDDVQFLSYKEKTNEIFFTIFN 233 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 + + D L ++ P L +R + I D+ +I K ++ I Sbjct: 234 NFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLGIAIQKLDNKTAIAIIKKEIKNQNI 293 Query: 192 F--IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS--RGMGITRSLAAEVLKE 241 + + +I + + V +++ + IT + +++ ++ Sbjct: 294 KSEVTSEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKTITIEIISDLFRD 347 >gi|257789780|ref|YP_003180386.1| chromosomal replication initiator protein DnaA [Eggerthella lenta DSM 2243] gi|317489243|ref|ZP_07947760.1| chromosomal replication initiator protein DnaA [Eggerthella sp. 1_3_56FAA] gi|325832244|ref|ZP_08165243.1| chromosomal replication initiator protein DnaA [Eggerthella sp. HGA1] gi|257473677|gb|ACV53997.1| chromosomal replication initiator protein DnaA [Eggerthella lenta DSM 2243] gi|316911644|gb|EFV33236.1| chromosomal replication initiator protein DnaA [Eggerthella sp. 1_3_56FAA] gi|325486080|gb|EGC88534.1| chromosomal replication initiator protein DnaA [Eggerthella sp. HGA1] Length = 520 Score = 79.0 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 37/235 (15%), Positives = 75/235 (31%), Gaps = 44/235 (18%) Query: 26 EQLFFSFPRCLG--ISRDDLLVHSAIEQAVRLIDSWPSWPSRV----VILVGPSGSGKSC 79 ++ P ++ ++ ++ + A + + P + + + G SG GK+ Sbjct: 161 REIALDGPDSPASTLTFENFVIGDSNRMAYSMAVAVAEMPGKAHLNPLFIYGKSGLGKTH 220 Query: 80 LANIWSDKSRST--RFSNIAKSLDSILIDTRKP-----------------------VLLE 114 L + T + S I +L D + +L++ Sbjct: 221 LMRAIQNYINETMPQLSTIYVDSAELLSDYMEASAAHDKQKSSYKNFKTRYEEADVLLID 280 Query: 115 DIDLLDFNDTQL---FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 D+ L L F I N + ++++A P + + SR + I Sbjct: 281 DVQYLQGKKQTLDIVFQIFNKLTSQGRQVVLSADRAPKNIDID-ERYRSRFNSGGTFDIQ 339 Query: 172 LPDDDFLEKVIVKMFAD--------RQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218 P+ + IVK F D I + YI + ++ + V K Sbjct: 340 PPEIETKLG-IVKSFVDEYRESEGSHDFNIPDDIQMYIAESSSSNIRELKSAVTK 393 >gi|14194681|sp|Q9KHU8|DNAA_ACHLA RecName: Full=Chromosomal replication initiator protein DnaA gi|8515411|gb|AAF75986.1|AF248639_2 DNA replication initiator protein [Acholeplasma laidlawii PG-8A] Length = 445 Score = 79.0 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 86/232 (37%), Gaps = 30/232 (12%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPSRVV---ILVGPSGSGKSCLANIWSD-------K 87 + D +V + A R+ P V + G G GK+ L + + Sbjct: 108 YTFDSFVVGKSNMFAFRMAMKVADHPGAVANPFYIFGDVGLGKTHLMQAIGNYILDNDVE 167 Query: 88 SRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLD---FNDTQLFHI 129 R D + + +R +L++DI ++ + F + Sbjct: 168 KRILYVKADNFIEDFVSLLSRNKNKTEEFNAKYKDIDVILVDDIQIMANASKTQMEFFKL 227 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA-- 187 + ++ + +++T+ +P L +R +A V I +P+ + ++ + A Sbjct: 228 FDYLYLNNKQIVITSDKPASQLTNIMPRLTTRFEAGLSVDIQIPELEHRISILKRKTATL 287 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 D + + + + +I + ++ E + ++ + A + + IT ++ E L Sbjct: 288 DANLEVSEDILTFIASQFAANIREMEGALIRLISYAQTFNLEITMNVVEEAL 339 >gi|33867691|gb|AAQ55180.1| DnaA [Mycoplasma mycoides subsp. capri LC] gi|259045721|gb|ACV91303.1| DnaA [Cloning vector pMycoPuro] Length = 450 Score = 78.7 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 30/211 (14%), Positives = 69/211 (32%), Gaps = 30/211 (14%) Query: 40 RDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSD--KSRSTRFS 94 ++ ++ ++ EQA + + P + + G SG GK+ L + +S + Sbjct: 114 FENFVIGASNEQAFIAVQTASKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLK 173 Query: 95 NIAKSLDSILIDT--------------------RKPVLLEDIDLLDFNDTQ---LFHIIN 131 S D ++++D+ L + + F I N Sbjct: 174 VSYMSGDEFARKAVDILQKTHKEIEQFKNEVCQNDVLIIDDVQFLSYKEKTNEIFFTIFN 233 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 + + D L ++ P L +R + I D+ +I K ++ I Sbjct: 234 NFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNI 293 Query: 192 F--IDKKLAAYIVQRMERSLVFAEKLVDKMD 220 + + +I + + V +++ Sbjct: 294 KSEVTSEAINFISNYYSDDVRKIKGSVSRLN 324 >gi|301060278|ref|ZP_07201144.1| putative chromosomal replication initiator protein DnaA [delta proteobacterium NaphS2] gi|300445621|gb|EFK09520.1| putative chromosomal replication initiator protein DnaA [delta proteobacterium NaphS2] Length = 317 Score = 78.7 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 35/199 (17%), Positives = 72/199 (36%), Gaps = 31/199 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKS--RSTRFSNIAKSLDSILIDTRKPV------------- 111 + + SGK+ L +++ ++ I S ++I+ K + Sbjct: 19 LYIYSKWSSGKTHLLQAIGNEAMKGASHKKAIYLSAENIISRFDKIIAEKSTSFWGKEKP 78 Query: 112 ----LLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164 LL+D D + N +L + + L++ A P LP L SRL+ Sbjct: 79 PRFLLLDDFDTVASNKSSQKELLSLCTQFLESKRQLVVAASVPPNQIRNLLPQLRSRLEW 138 Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD---- 220 + +I PD K++ + + I ++ + + LV ++D Sbjct: 139 GLITEIKTPDQKTKMKLVHQKTKQKGIQFQADATFFLAS----TTNDLKNLVHQIDKIKI 194 Query: 221 NLALSRGMGITRSLAAEVL 239 + +L G + S+ +L Sbjct: 195 HASL-YGNNMDISIVQSIL 212 >gi|157803546|ref|YP_001492095.1| chromosomal replication initiation protein [Rickettsia canadensis str. McKiel] gi|166214698|sp|A8EY77|DNAA_RICCK RecName: Full=Chromosomal replication initiator protein DnaA gi|157784809|gb|ABV73310.1| hypothetical protein A1E_01825 [Rickettsia canadensis str. McKiel] Length = 463 Score = 78.7 bits (193), Expect = 8e-13, Method: Composition-based stats. Identities = 35/244 (14%), Positives = 83/244 (34%), Gaps = 36/244 (14%) Query: 35 CLGISRDDLLVHSAIEQAV-------RLIDSWPSWPSRVVILVGPSGSGKSCLANI--WS 85 + + D+ +V E A D+ S + L G G GK+ L + W Sbjct: 127 DVRFTFDNFVVGVPNELAYAAARAVAESTDAVSE--SNPLFLYGGVGLGKTHLMHAIGWY 184 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKP------------------VLLEDIDLLDFND---T 124 K + I S + + K ++++DI + D Sbjct: 185 IKQNNPNRKVIYMSAEKFMYQFVKALRNKEVISFKEKFRSVDVLMIDDIQFICGKDSTQE 244 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + FH N++ + ++++ P + SRL V + + ++ Sbjct: 245 EFFHTFNTLIDNNRQIVISCDRSPSDLDNIEDRIKSRLGWGLVADVHSTTYELRLGILES 304 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR----SLAAEVLK 240 + I K + ++ ++ ++ E ++K+ + IT ++ ++L+ Sbjct: 305 KIEQMNVKIPKNVIDFLASKIVSNVRELEGALNKVIAHSNFTLKEITLENTQNILRDLLR 364 Query: 241 ETQQ 244 ++ Sbjct: 365 SNER 368 >gi|303246808|ref|ZP_07333085.1| Chromosomal replication initiator DnaA domain protein [Desulfovibrio fructosovorans JJ] gi|302491825|gb|EFL51705.1| Chromosomal replication initiator DnaA domain protein [Desulfovibrio fructosovorans JJ] Length = 445 Score = 78.3 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 84/233 (36%), Gaps = 27/233 (11%) Query: 31 SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDK 87 FP + + L + + L +L GPSG+GK+ L ++ Sbjct: 107 DFPYGHRFTFETFLANEKNHFPLALAREVAGGREARYNPFLLCGPSGAGKTHLLRAMANA 166 Query: 88 ------SRSTRFSNIAKSLDSILIDTRKP------------VLLE---DIDLLDFNDTQL 126 S + F +I + T P + ++ D+ + +L Sbjct: 167 VSRSRPSAAVFFGSIDDIGNRYADPTANPHEIRAAIVASDFLFIDELADVKRDPILEQEL 226 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 + N+ H ++ + R S P L SRL+ +V + LPD D + + Sbjct: 227 VLLFNAFHDAGKQMVFSCRERVASCDFG-PTLKSRLEWGLMVHLKLPDLDVRVRCVEHAN 285 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS-LAAEV 238 D+++ + ++ + R E E ++ +++ G +T + LA + Sbjct: 286 RDKRLGLSREQTLTLASRFE-GFRQLEGVLLRIEAFRRHTGQELTDAELARHI 337 >gi|331703021|ref|YP_004399708.1| chromosomal replication initiator protein DnaA [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328801576|emb|CBW53729.1| Chromosomal replication initiator protein DnaA [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 450 Score = 78.3 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 30/211 (14%), Positives = 69/211 (32%), Gaps = 30/211 (14%) Query: 40 RDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSD--KSRSTRFS 94 ++ ++ ++ EQA + + P + + G SG GK+ L + +S + Sbjct: 114 FENFVIGASNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLK 173 Query: 95 NIAKSLDSILIDT--------------------RKPVLLEDIDLLDFNDTQ---LFHIIN 131 S D ++++D+ L + + F I N Sbjct: 174 VSYMSGDEFARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLSYKEKTNEIFFTIFN 233 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 + + D L ++ P L +R + I D+ +I K ++ I Sbjct: 234 NFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNI 293 Query: 192 F--IDKKLAAYIVQRMERSLVFAEKLVDKMD 220 + + +I + + V +++ Sbjct: 294 KSEVTSEAINFISNYYSDDVRKIKGSVSRLN 324 >gi|256383664|gb|ACU78234.1| chromosomal replication initiator protein DnaA [Mycoplasma mycoides subsp. capri str. GM12] gi|296455846|gb|ADH22081.1| chromosomal replication initiator protein DnaA [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 450 Score = 78.3 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 30/211 (14%), Positives = 69/211 (32%), Gaps = 30/211 (14%) Query: 40 RDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSD--KSRSTRFS 94 ++ ++ ++ EQA + + P + + G SG GK+ L + +S + Sbjct: 114 FENFVIGASNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLK 173 Query: 95 NIAKSLDSILIDT--------------------RKPVLLEDIDLLDFNDTQ---LFHIIN 131 S D ++++D+ L + + F I N Sbjct: 174 VSYMSGDEFARKAVDILQKTHKEIEQFKNEVCQNDVLIIDDVQFLSYKEKTNEIFFTIFN 233 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 + + D L ++ P L +R + I D+ +I K ++ I Sbjct: 234 NFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNI 293 Query: 192 F--IDKKLAAYIVQRMERSLVFAEKLVDKMD 220 + + +I + + V +++ Sbjct: 294 KSEVTSEAINFISNYYSDDVRKIKGSVSRLN 324 >gi|298290019|ref|YP_003691958.1| chromosomal replication initiator protein DnaA [Starkeya novella DSM 506] gi|296926530|gb|ADH87339.1| chromosomal replication initiator protein DnaA [Starkeya novella DSM 506] Length = 412 Score = 78.3 bits (192), Expect = 9e-13, Method: Composition-based stats. Identities = 37/204 (18%), Positives = 71/204 (34%), Gaps = 25/204 (12%) Query: 67 VILVGPSGSGKSCLANI---WSDKSRSTRFSNIAKSLDSILIDTRKPVLLED-------I 116 + + G +G GK+ L +++S A+ + K ED I Sbjct: 107 LFVHGGTGLGKTHLLQALAQAAEESGRRVAYLTAERFMFGFVAAMKTGTTEDFRARFGEI 166 Query: 117 DLLDFNDTQLFH----------IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 DLL +D Q H +N++ +++ A P L SRL A Sbjct: 167 DLLLLDDVQGLHGKSVQQAFSSALNALMDAHRQVVIAADRHPGDLDAFDERLRSRLGAGL 226 Query: 167 VVKISLPDDDFLEKVIVKMFADR-----QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 V+++ DD+ +I + +A ++ + V+++ Sbjct: 227 VIELRSLDDEVRAAIIAAQAERAAVLSPGFALPVDVARFLASDGRMNARDLAGAVNRLLA 286 Query: 222 LALSRGMGITRSLAAEVLKETQQC 245 G+ IT +A VL++ + Sbjct: 287 PHQFGGVEITMDMAQAVLRDVIRT 310 >gi|157826881|ref|YP_001495945.1| chromosomal replication initiation protein [Rickettsia bellii OSU 85-389] gi|166214697|sp|A8GVN1|DNAA_RICB8 RecName: Full=Chromosomal replication initiator protein DnaA gi|157802185|gb|ABV78908.1| chromosomal replication initiation protein [Rickettsia bellii OSU 85-389] Length = 463 Score = 78.3 bits (192), Expect = 9e-13, Method: Composition-based stats. Identities = 33/242 (13%), Positives = 82/242 (33%), Gaps = 32/242 (13%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS-----RVVILVGPSGSGKSCLANI--WSDK 87 + + D+ +V + E A + S + L G G GK+ L + W K Sbjct: 127 DIRFTFDNFVVGAPNELAYAAARAVAESSSAVSESNPLFLYGGVGLGKTHLMHAIGWYIK 186 Query: 88 SRSTRFSNIAKSLDSILIDTRKPV------------------LLEDIDLLDFND---TQL 126 + I S + + K + +++DI + D + Sbjct: 187 QNNPSRKVIYMSAEKFMYQFVKALRNKEVMSFKEKFRSVDVLMIDDIQFICGKDSTQEEF 246 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 FH N++ + ++++ P + SRL V + + ++ Sbjct: 247 FHTFNTLIDNNRQMVISCDRSPSDLDDIEDRIKSRLGWGLVADVHSTTYELRLGILESKI 306 Query: 187 ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR----SLAAEVLKET 242 + + K ++ ++ ++ E ++K+ + IT ++ ++L+ Sbjct: 307 EQMNVKVPKDAIDFLASKIVSNVRELEGALNKVIAHSNFTAKEITLENTQNILRDLLRSN 366 Query: 243 QQ 244 ++ Sbjct: 367 ER 368 >gi|258404913|ref|YP_003197655.1| chromosomal replication initiator protein DnaA [Desulfohalobium retbaense DSM 5692] gi|257797140|gb|ACV68077.1| chromosomal replication initiator protein DnaA [Desulfohalobium retbaense DSM 5692] Length = 460 Score = 78.3 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 44/269 (16%), Positives = 85/269 (31%), Gaps = 45/269 (16%) Query: 13 PDKQKNDQPKNKEEQ------LFFSFPRCL-----GISRDDLLVHSAIEQAVRLIDSW-- 59 P+ + +Q L + S DD ++ + A + Sbjct: 92 PNTTHHTATPAASQQRSEHLALPIDYSHVPQPQQWRHSFDDFIIGQCNQLAHAACTNLCR 151 Query: 60 PSWPSRVVILVGPSGSGKSCLANI-----------------------WSDKSRSTRFSNI 96 + P+ V L G GK+ L + ++++ + Sbjct: 152 KTLPAESVFLSSGPGLGKTHLLHAVGHYYAQNQKNSQVRVGYVTAEEFANQMIMALKNRT 211 Query: 97 AKSLDSILIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 + +LLED+ + +L I + Q+ ++ ++ P Sbjct: 212 IGTFKDRYRKNLDVLLLEDVHFFQGKEKIQEELLSTIKFLEQHGRKVVFSSSFLPKELNK 271 Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213 L S + + I PD D K+I QI I ++ + + + Sbjct: 272 VDNQLTSLFCSGFIAPIDAPDADMRLKIIQAKAQRFQIHIPTEVQEMVAENI---HSDIR 328 Query: 214 KLVDKMDNLALSRG---MGITRSLAAEVL 239 +L + N+AL GI ++LA EVL Sbjct: 329 QLESCIKNMALKARLLNQGINQALAEEVL 357 >gi|158520018|ref|YP_001527888.1| chromosomal replication initiator protein DnaA [Desulfococcus oleovorans Hxd3] gi|158508844|gb|ABW65811.1| chromosomal replication initiator protein DnaA [Desulfococcus oleovorans Hxd3] Length = 460 Score = 77.9 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 37/252 (14%), Positives = 79/252 (31%), Gaps = 36/252 (14%) Query: 27 QLFFS-FPRCLGISR--------DDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSG 74 QL R D+ +V + + A + + R + L G Sbjct: 107 QLTLPSVQVKPATGRVLKADYTFDNFVVGNHNDFAYTAVLSLGARQQSGGRSLFLSSRPG 166 Query: 75 SGKSCLANIWSDKS-----RSTRFSNIAKSLDSILIDTRKP----------------VLL 113 GKS LA ++ + + + ++ +L+ Sbjct: 167 MGKSHLAQALGHQTIKAQPGCRVYYTTVEDFSNEMVYAYTTKSSGAFKKKYRTGFDMLLI 226 Query: 114 EDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 +DI L D +L +++ + + D +L P L SRL + + Sbjct: 227 DDIHALAGKDRTQEELAMVVDYMLEADRKVLFAGCCLPGEIPKMNDQLKSRLSCGLITTM 286 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 PD +++ K + + + Y+ + + E + + + G+ + Sbjct: 287 ETPDFTTRVRILEKKARFYGYAVPRDILEYLADVLTEDVRQLESGLANLATKSCLLGVPM 346 Query: 231 TRSLAAEVLKET 242 R LA ++K Sbjct: 347 DRELAESIIKNM 358 >gi|254417773|ref|ZP_05031497.1| chromosomal replication initiator protein DnaA [Brevundimonas sp. BAL3] gi|196183950|gb|EDX78926.1| chromosomal replication initiator protein DnaA [Brevundimonas sp. BAL3] Length = 479 Score = 77.5 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 35/219 (15%), Positives = 71/219 (32%), Gaps = 32/219 (14%) Query: 37 GISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRF 93 ++ D + A+ + + SW V GP G GK+ L N + +++ R Sbjct: 140 RLTFDSFVEGQGNAFALAIAKQVASWADGHFNPVFFCGPYGYGKTHLLNAIAWEAQRLRP 199 Query: 94 SNIAKSLDSIL--------------------IDTRKPVLLEDIDLLDF---NDTQLFHII 130 L + + + +LL+D+ + +L + Sbjct: 200 EAKVVYLTAERFLSTFVKAMQDRSTAAFKESLRSADMLLLDDVQFVGGKTSTQEELLSTL 259 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR- 189 ++ + ++ +A P++ P L S L A + D + V Sbjct: 260 TALIEDGKRIVFSADRAPMALTEVEPRLRSHLAAGLTCPVEAGDRELKIAVAQNRLKALS 319 Query: 190 -----QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 Q ++ A +V R S+ E V+ + A Sbjct: 320 ALGVVQGEAAPEVLAQLVDRTPGSMRELEGAVNTLAAAA 358 >gi|86356015|ref|YP_467907.1| chromosomal replication initiation protein [Rhizobium etli CFN 42] gi|86280117|gb|ABC89180.1| chromosomal replication initiator protein [Rhizobium etli CFN 42] Length = 516 Score = 77.5 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 40/219 (18%), Positives = 79/219 (36%), Gaps = 32/219 (14%) Query: 33 PRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRV--VILVGPSGSGKSCLANIWSDK 87 P + D + S+ A+ I S R + + G GK+ L ++ Sbjct: 174 PLDSRFTFDTFVEGSSNRVALAAAKTIAEVGSGAVRFNPLFVHSTVGLGKTHLLQAIANA 233 Query: 88 S----RSTRFSNIAKS----LDSILIDTRKPVLLED----IDLLDFNDTQLF-------- 127 + R+ R + + I + L+D IDLL +D Q Sbjct: 234 AVQNPRALRVVYLTAEYFMWRFATAIRDNDALTLKDSLRNIDLLIIDDMQFLQGKMIQHE 293 Query: 128 --HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD-DDFLEKVIVK 184 H++N + +++ A P P + SRL+ +++ PD + LE + + Sbjct: 294 FCHLLNMLLDSAKQVVVAADRAPWELESLDPRVRSRLQGGVAIELDAPDYEMRLEILKRR 353 Query: 185 MFADR----QIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 + A R + I L ++ + + S E +++ Sbjct: 354 LAAARLEDPSLEIPADLLQHVARNITASGRELEGAFNQL 392 >gi|114704371|ref|ZP_01437279.1| chromosomal replication initiation protein [Fulvimarina pelagi HTCC2506] gi|114539156|gb|EAU42276.1| chromosomal replication initiation protein [Fulvimarina pelagi HTCC2506] Length = 504 Score = 77.5 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 31/248 (12%), Positives = 77/248 (31%), Gaps = 39/248 (15%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDS-----WPSWPSRVVILVGPSGSGKSCLANIWSDK 87 P D + +A A+ + S+ + + G GK+ L ++ Sbjct: 162 PLDPRYVFDTFVEGTANRVAMAAGRAIAENGPQSFRFNPLFIHAGVGLGKTHLLQAIANA 221 Query: 88 SR--------------------STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DTQ 125 + ++ + + ++++D+ L + Sbjct: 222 AAGRDDAPRVVYLTAEYFMWRFASAIRDNKALDLKETLRGTDVLIIDDVQFLQGKSIQQE 281 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 H++N++ ++ A P + SRL ++++ PD ++I Sbjct: 282 FCHLLNALIDSAKHVICAADRPAKELESLDPRVRSRLSNGITLELATPDYAMRREIIEMR 341 Query: 186 -----FADRQIFIDKKLAAYIVQRME---RSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237 D + ++ I +R++ R L A + +L G + E Sbjct: 342 IRALAAEDPTFVLSEETIDAIARRVDGTGRDLEGAFNQIAF--RHSL--GQPLNPEAIVE 397 Query: 238 VLKETQQC 245 +L + + Sbjct: 398 ILAQFSRT 405 >gi|163782527|ref|ZP_02177524.1| chromosome replication initiator protein DnaA [Hydrogenivirga sp. 128-5-R1-1] gi|159882100|gb|EDP75607.1| chromosome replication initiator protein DnaA [Hydrogenivirga sp. 128-5-R1-1] Length = 407 Score = 77.5 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 33/211 (15%), Positives = 75/211 (35%), Gaps = 29/211 (13%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI---WSDKS 88 + S ++ +V A + + P + + + G G GK+ L + + Sbjct: 89 NVKYSFNNFVVGEGNRLAYEVALEVANSPGSLYNPLFIYGGVGLGKTHLLQAIGNFCVEK 148 Query: 89 RSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDF---NDTQLFHII 130 A +++ K +LL+DI L + F+I Sbjct: 149 GYHVVYKSANDFSEEMVEAIKTGSVKEFRNRYRSIDLLLLDDIQFLSGKTRTQVEFFNIF 208 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF--LEKVIVKMFAD 188 N + + +++ + P L SR + VV+I L D+ LE + K+ Sbjct: 209 NHMFLKEKQIVLASDRHPKELKDVSDRLVSRFEGGLVVEICL--DELTKLEIIKRKLCEL 266 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 + I + ++ ++++ ++ E + + Sbjct: 267 K-IEVQDRIVESLMEQTSNNVRDIEGTIRGL 296 >gi|256384495|gb|ACU79064.1| chromosomal replication initiator protein DnaA [Mycoplasma mycoides subsp. capri str. GM12] gi|256384749|gb|ACU79318.1| chromosomal replication initiator protein DnaA [unidentified plasmid] Length = 450 Score = 77.5 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 30/211 (14%), Positives = 69/211 (32%), Gaps = 30/211 (14%) Query: 40 RDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSD--KSRSTRFS 94 ++ ++ ++ EQA + + P + + G SG GK+ L + +S + Sbjct: 114 FENFVIGASNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLK 173 Query: 95 NIAKSLDSILIDT--------------------RKPVLLEDIDLLDFNDTQ---LFHIIN 131 S D ++++D+ L + + F I N Sbjct: 174 VSYMSGDEFARKAVDILQKTHKEIEQFKNEVCQNDVLIIDDVQFLSYKEKTNEIFFTIFN 233 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 + + D L ++ P L +R + I D+ +I K ++ I Sbjct: 234 NSIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNI 293 Query: 192 F--IDKKLAAYIVQRMERSLVFAEKLVDKMD 220 + + +I + + V +++ Sbjct: 294 KSEVTSEAINFISNYYSDDVRKIKGSVSRLN 324 >gi|39938487|ref|NP_950253.1| chromosomal replication initiator protein [Onion yellows phytoplasma OY-M] gi|61212623|sp|Q6YRL3|DNAA_ONYPE RecName: Full=Chromosomal replication initiator protein DnaA gi|39721596|dbj|BAD04086.1| chromosomal replication initiator protein [Onion yellows phytoplasma OY-M] Length = 507 Score = 77.5 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 37/238 (15%), Positives = 84/238 (35%), Gaps = 31/238 (13%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIW------ 84 S D+ +V + A ++ + + + G +G GK+ L Sbjct: 164 TNPKYSFDNFVVGKSNNFAFKIAKKIAEEKKVTTNPLYIFGKAGIGKTHLIQAIGNHILK 223 Query: 85 -SDKSRSTRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFN---DTQL 126 + S+ + ++ RK +L++DI ++ + Sbjct: 224 KTHSSKKVLYVKADGFIEEFTNQLRKAKMEDFNEKYRDIDLLLVDDIQIMAGATRTQMEF 283 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 F + + ++ +++T+ + L SR +A +V I PD + ++ K Sbjct: 284 FKLFDYLYLNQKQIVITSDKQASELKNIMSRLTSRFEAGLMVDIQSPDFNHRLNILKKKI 343 Query: 187 AD----RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + I K + I ++ E + ++ N A + G I ++A E L+ Sbjct: 344 LEFEPQNPLKIKKDVLDLIASSFVNNVREMEGALLRLLNYAQTFGYDIDINIANEALE 401 >gi|319778796|ref|YP_004129709.1| Chromosomal replication initiator protein DnaA [Taylorella equigenitalis MCE9] gi|317108820|gb|ADU91566.1| Chromosomal replication initiator protein DnaA [Taylorella equigenitalis MCE9] Length = 520 Score = 77.1 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 40/249 (16%), Positives = 91/249 (36%), Gaps = 40/249 (16%) Query: 35 CLGISRDDLLVHSAIEQAV----RLIDSWPSWPSRVVILVGPSGSGKSCLANIWS----- 85 ++ +L+V + E A ++ + + + G +G GK+ + + Sbjct: 180 NQRLTFQNLVVGDSNELAYVTAQNVVRNIGKHGYNPLFIYGKTGLGKTHIMHAIGNELFT 239 Query: 86 -DKSRSTRFSNIAKSLDSILIDTRKPVLLE---------DIDLLDFNDTQLFH------- 128 K R+ + + I + +E + DLL +D QLF Sbjct: 240 KHKMRNVLYIHAETYYTEITRRMIEGRWVEYRAQDNKYINSDLLLMDDVQLFARKERTQQ 299 Query: 129 ----IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + ++ D ++++ TFP + L SR + +++I PD + ++ Sbjct: 300 EFFVLYEALVNNDKQVVISCDTFPDNLDAIEDRLKSRFQNGLIIEIEPPDVELRVSILKS 359 Query: 185 MFAD-RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA-------A 236 D + ++A YI ++ ++ E + K+ +A S+ I + Sbjct: 360 KAKDFPDMEFTDEVALYIASNIKSNVRELEGALQKV--MAYSQFKQIDKPTVDTCKAALR 417 Query: 237 EVLKETQQC 245 +VL++ Sbjct: 418 DVLRQRNGS 426 >gi|320101556|ref|YP_004177147.1| chromosomal replication initiator protein DnaA [Isosphaera pallida ATCC 43644] gi|319748838|gb|ADV60598.1| chromosomal replication initiator protein DnaA [Isosphaera pallida ATCC 43644] Length = 487 Score = 77.1 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 30/206 (14%), Positives = 68/206 (33%), Gaps = 29/206 (14%) Query: 40 RDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSR-----ST 91 D+ +V + A R ++L G G GK+ L ++ + Sbjct: 144 FDEFVVGPCNQLAHAAALDAARGLGRSCGPLVLHGAVGLGKTHLLESLHHLAKRLHPSAR 203 Query: 92 RFSNIAKSLDSILIDT---------------RKPVLLEDIDLLDF---NDTQLFHIINSI 133 A++ + ++ ++++D L + H N++ Sbjct: 204 ILHLTAEAFTNRFLEAIRGQNLGGFRARHRQADLLIVDDAHFLAAKRATQDEFLHTYNAV 263 Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193 +++ P +L +R V +++PD + +I A R + + Sbjct: 264 SSQGGLVVVAVDRHPRRLERMSDELRTRFLGGVVAPLTVPDQETRRALIRSKAAARGVAL 323 Query: 194 DKKLAAYIV--QRME-RSLVFAEKLV 216 +++ A + R R L A +V Sbjct: 324 PEEIVALLADPPRASVRELEGALNVV 349 >gi|254363202|ref|ZP_04979251.1| chromosomal replication initiator protein DnaA [Mannheimia haemolytica PHL213] gi|153095096|gb|EDN75647.1| chromosomal replication initiator protein DnaA [Mannheimia haemolytica PHL213] Length = 445 Score = 77.1 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 35/240 (14%), Positives = 81/240 (33%), Gaps = 35/240 (14%) Query: 35 CLGISRDDLLVHSAIEQA----VRLIDSWPSWPSRVVILVGPSGSGKSCLAN-------- 82 + D+ + + + A +++D+ + +G GK+ L + Sbjct: 108 NPNQTFDNFVQGRSNQLAKLVAQQVVDNLGESHCNPLSFYAGTGLGKTHLLHAIGNELVK 167 Query: 83 ---------IWSDKSRSTRFSNIAKSLDSI-----LIDTRKPVLLEDIDLLDFN---DTQ 125 I ++ I S + + ++++DI L + Sbjct: 168 RTPGTRVLYIHLERFYRDIIKAINSSNNDAEKIKKFYRSLDVLMIDDIQFLANKPKVQEE 227 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 H++N++ + +++T+ P + + SRL I P+ + ++ + Sbjct: 228 FLHLLNALFEQRKQIILTSDVLPKNIDKIDTAIKSRLSGGISATIEPPELETRVAILRQK 287 Query: 186 FADRQIFIDKKLAAYIVQRME---RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +R + + A + Q++ R L A V L L IT E L++ Sbjct: 288 ALERGADLQEDAAYLMGQKLRTNVRELEGALNRVIAWQKLTL---RPITVDAVRETLQDL 344 >gi|90420502|ref|ZP_01228409.1| chromosomal replication initiator DnaA [Aurantimonas manganoxydans SI85-9A1] gi|90335230|gb|EAS48983.1| chromosomal replication initiator DnaA [Aurantimonas manganoxydans SI85-9A1] Length = 505 Score = 77.1 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 43/245 (17%), Positives = 80/245 (32%), Gaps = 43/245 (17%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDS-WPSWPSRV----VILVGPSGSGKSCLANIWSDK 87 P D L+ S+ A+ + + P V + + G GK+ L ++ Sbjct: 163 PLDPRYVFDTLVEGSSNRVALAAGRAIAENGPQSVRFNPLFIHAAVGLGKTHLLQAIANA 222 Query: 88 SRSTRFSNIAKSLDSILIDTRKPVLLED------------IDLLDFNDTQLF-------- 127 + L + R + D ID+L +DTQ Sbjct: 223 AIRREDKPRVVYLTAEYFMWRFATAIRDNRALDLKETLRGIDILIIDDTQFLQGKSIQQE 282 Query: 128 --HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 H++N++ ++ A + P + SRL ++++ PD + +I Sbjct: 283 FCHLLNALIDSAKQVICAADRPAMELESLDPRVRSRLSNGITLELAAPDYEMRRSIIRTR 342 Query: 186 FA-----DRQIFIDKKLAAYIVQRM---ERSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237 A D + + I QR+ R L A + +L + L+AE Sbjct: 343 AAAMRAEDPSFDMPDGVIDTIAQRVAGSGRDLEGAFNQIAF--RHSLGQ------PLSAE 394 Query: 238 VLKET 242 L + Sbjct: 395 HLDDL 399 >gi|118566876|gb|ABL01757.1| unknown [Salmonella enterica subsp. enterica serovar Typhi] Length = 134 Score = 77.1 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 48/105 (45%), Gaps = 4/105 (3%) Query: 107 TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 + +L++DI + + FH N++ + + +++T+ +P L SR Sbjct: 30 SVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFG 89 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 V I P+ + +++K + I + ++A +I +R+ RS Sbjct: 90 WGLTVAIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRL-RS 133 >gi|261493280|ref|ZP_05989807.1| chromosomal replication initiator protein DnaA [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496476|ref|ZP_05992856.1| chromosomal replication initiator protein DnaA [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307679|gb|EEY09002.1| chromosomal replication initiator protein DnaA [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311130|gb|EEY12306.1| chromosomal replication initiator protein DnaA [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 449 Score = 77.1 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 36/240 (15%), Positives = 81/240 (33%), Gaps = 35/240 (14%) Query: 35 CLGISRDDLLVHSAIEQA----VRLIDSWPSWPSRVVILVGPSGSGKSCLAN-------- 82 + D+ + + + A +++D+ + +G GK+ L + Sbjct: 112 NPNQTFDNFVQGRSNQLAKLVAQQVVDNLGESHCNPLSFYAGTGLGKTHLLHAIGNELVK 171 Query: 83 ---------IWSDKSRSTRFSNIAKSLDSI-----LIDTRKPVLLEDIDLLDFN---DTQ 125 I ++ I S + + ++++DI L + Sbjct: 172 RTPGTRVLYIHLERFYRDIIKAINSSNNDAEKIKKFYRSLDVLMIDDIQFLANKPKVQEE 231 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 H++NS+ + +++T+ P + + SRL I P+ + ++ + Sbjct: 232 FLHLLNSLFEQRKQIILTSDVLPKNIDKIDTAIKSRLSGGISATIEPPELETRVAILRQK 291 Query: 186 FADRQIFIDKKLAAYIVQRME---RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +R + + A + Q++ R L A V L L IT E L++ Sbjct: 292 ALERGADLQEDAAYLMGQKLRTNVRELEGALNRVIAWQKLTL---RPITVDAVRETLQDL 348 >gi|319406516|emb|CBI80158.1| chromosomal replication initiator protein DnaA [Bartonella sp. 1-1C] Length = 520 Score = 77.1 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 33/207 (15%), Positives = 65/207 (31%), Gaps = 32/207 (15%) Query: 29 FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP-----SRVVILVGPSGSGKSCLANI 83 F P + ++ + ++ A+ S + + G GK+ L Sbjct: 171 VFGSPLDSRYTFENFIEGASNRVALAAARSIAEGHKSSLRFNPLFIYASVGLGKTHLLQA 230 Query: 84 WSDKSRSTRFSNIAKSLDSILIDTRKPVLLED------------IDLLDFNDTQLF---- 127 + + L + R V + D IDLL +D Q Sbjct: 231 IAAAALKRLTPARVIYLTAEYFMWRFAVAIRDNDALSFKEQLRDIDLLIIDDMQFLQGKS 290 Query: 128 ------HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 H++N + +++ A P + SRL+ ++I PD + + Sbjct: 291 IQREFCHLLNMLLDSAKQVIVAADRPPAELESLDLRVRSRLQGGVTLEIETPDYEMRLAM 350 Query: 182 IVKMFADRQ-----IFIDKKLAAYIVQ 203 + + Q I I ++ YI + Sbjct: 351 LRQRLKVAQQDDNMITISDEILEYIAK 377 >gi|85057281|ref|YP_456197.1| chromosomal replication initiation protein [Aster yellows witches'-broom phytoplasma AYWB] gi|123766371|sp|Q2NKC5|DNAA_AYWBP RecName: Full=Chromosomal replication initiator protein DnaA gi|84789386|gb|ABC65118.1| chromosomal replication initiation protein [Aster yellows witches'-broom phytoplasma AYWB] Length = 504 Score = 77.1 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 39/238 (16%), Positives = 85/238 (35%), Gaps = 31/238 (13%) Query: 34 RCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIW------ 84 S D+ +V + A ++ I + + + G SG GK+ L Sbjct: 161 TNPKYSFDNFVVGKSNNFAFKISKKIAEEKKVTTNPLYIFGKSGIGKTHLIQAIGNHILK 220 Query: 85 -SDKSRSTRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFN---DTQL 126 + S+ + ++ RK +L++DI ++ + Sbjct: 221 NTHSSKKVLYVKADGFIEEFTNQLRKAKMEDFNEKYRDIDLLLVDDIQIMAGATRTQMEF 280 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 F + + ++ +++T+ + L SR +A +V I PD + ++ K Sbjct: 281 FKLFDYLYLNQKQIVITSDKQASELKNIMSRLTSRFEAGLMVDIQSPDFNHRLNILKKKI 340 Query: 187 AD----RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + I K + I ++ E + ++ N A + G I ++A E L+ Sbjct: 341 LEFEPQNTLKIKKDVLDLIASSFVNNVREMEGALLRLLNYAQTFGYDIDINIANEALE 398 >gi|244439|gb|AAB21305.1| DnaA protein [Mycoplasma capricolum, Peptide, 450 aa] Length = 450 Score = 76.7 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 32/234 (13%), Positives = 78/234 (33%), Gaps = 32/234 (13%) Query: 40 RDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSD--KSRSTRFS 94 ++ ++ S+ EQA + + P + + G SG GK+ L + +S + Sbjct: 114 FENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLK 173 Query: 95 NIAKSLDSILIDT--------------------RKPVLLEDIDLLDFNDTQ---LFHIIN 131 S D ++++D+ L + + F I N Sbjct: 174 VSYMSGDEFARKAVDILQKTHKEIEQFKNEVCQNDVLIIDDVQFLSYKEKTNEIFFTIFN 233 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 + + D L ++ P + +R + I D+ +I K ++ I Sbjct: 234 NFIENDKQLFFSSDKSPELLNGFDNRIITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNI 293 Query: 192 F--IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS--RGMGITRSLAAEVLKE 241 + + +I + + V +++ + IT + +++ ++ Sbjct: 294 KTEVTNEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKVITIEIISDLFRD 347 >gi|256830860|ref|YP_003159588.1| Sigma 54 interacting domain-containing protein [Desulfomicrobium baculatum DSM 4028] gi|256580036|gb|ACU91172.1| Sigma 54 interacting domain protein [Desulfomicrobium baculatum DSM 4028] Length = 426 Score = 76.3 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 33/220 (15%), Positives = 69/220 (31%), Gaps = 26/220 (11%) Query: 15 KQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVG 71 + + + Q + P D+ LV++ + + P +L G Sbjct: 76 RSRIVRESRPAGQ---ALPFGSEFIFDNFLVNNKNYFPLASAQEVAQSREAPYNPFVLCG 132 Query: 72 PSGSGKSCLANIWS---DKSRSTR-FSNIAKSLDSILIDTRKP---------VLLEDIDL 118 SGSGKS L + + + + + L + + ++D+ Sbjct: 133 ESGSGKSFLLRAIANARSEHGADGSYVGGIEDLHELYSSRSDARKFLTSMQLLAVDDLQE 192 Query: 119 LD---FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 + + +L + + H ++ + P L SRL+ V + PD Sbjct: 193 IARYRYLQGELLALFDHFHLQRKQMVFACTGKVGGYTFLAPKLKSRLEWGLSVMLKAPDL 252 Query: 176 DFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215 D + +R++ + K + QR L Sbjct: 253 DIRTQYAQSRCRERRLDLSKDRILLLAQR----FADLRNL 288 >gi|222147316|ref|YP_002548273.1| chromosomal replication initiation protein [Agrobacterium vitis S4] gi|221734306|gb|ACM35269.1| chromosomal replication initiator protein DnaA [Agrobacterium vitis S4] Length = 524 Score = 76.0 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 35/230 (15%), Positives = 77/230 (33%), Gaps = 32/230 (13%) Query: 22 KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRV--VILVGPSGSG 76 + + F P + D + ++ AV I + R + + G G Sbjct: 171 RAPVQGPLFGSPLDSRYTFDGFVEGASNRVAVAAAKTIAEAGAGAVRFNPLFIHSSVGLG 230 Query: 77 KSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLED------------IDLLDFNDT 124 K+ L ++ + + + L + R + D IDLL +D Sbjct: 231 KTHLLQAIANAAIHSPRAPRVVYLTAEYFMWRFATAIRDNDALTLKDSLRNIDLLIIDDM 290 Query: 125 QLF----------HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 Q H++N + +++ A P + SRL+ +++ PD Sbjct: 291 QFLQGKTIQHEFCHLLNMLLDSAKQVVVAADRAPWELESLDQRVRSRLQGGVAIEMEAPD 350 Query: 175 -----DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 D ++ + D + I ++ A++ + + S E +++ Sbjct: 351 YDMRLDMLKTRLALAKKEDPSLEIPAEIIAHVARNVASSGRDLEGAFNQL 400 >gi|330903390|gb|EGH33962.1| chromosomal replication initiation protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 163 Score = 76.0 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 48/115 (41%), Gaps = 3/115 (2%) Query: 107 TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 + +L++DI + + FH N++ + +++T+ +P L SR Sbjct: 42 SVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFG 101 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218 V + P+ + +++K ++ + A +I QR+ ++ E + + Sbjct: 102 WGLTVAVEPPELETRVAILMKKADQAKVDLPHDAAFFIAQRIRSNVRELEGALKR 156 >gi|256826461|ref|YP_003150420.1| chromosomal replication initiator protein DnaA [Cryptobacterium curtum DSM 15641] gi|256582604|gb|ACU93738.1| chromosomal replication initiator protein DnaA [Cryptobacterium curtum DSM 15641] Length = 506 Score = 76.0 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 41/245 (16%), Positives = 80/245 (32%), Gaps = 44/245 (17%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLANIWSDKSRSTR 92 G S + ++ ++ + A + + P + + G SG GK+ L + Sbjct: 163 GYSFESFVIGTSNKMAYSMAVAVAETPGQPQFNPLFIYGKSGLGKTHLLRSIQNYVHHAY 222 Query: 93 FSNIAKSLDSILI-----------------------DTRKPVLLEDIDLLDFNDTQL--- 126 + +D++ + +T +L++D+ L L Sbjct: 223 PTAKTVYVDTMALVNDYTDAAISRSNKSFSQFKQKYETADVLLIDDVQGLQNKKETLNMV 282 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC--SRLKAATVVKISLPDDDFLEKVIVK 184 F I+NS+ ++ +A P + + D SR I P+ + +I Sbjct: 283 FQILNSMIDRGKQVVFSADRAPKNIDI---DERYMSRFNMGGTCDIQPPELETKLGIIKN 339 Query: 185 MFA--DRQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR--GMGITRSLAA 236 R I + YI Q ++ + V K+ L IT AA Sbjct: 340 YLEECRRGANDDFSIPADVQEYIAQNSSSNIRELKSAVTKV-VFELRNNGKSEITIDEAA 398 Query: 237 EVLKE 241 +L + Sbjct: 399 RLLTD 403 >gi|328946931|ref|YP_004364268.1| Chromosomal replication initiator protein dnaA [Treponema succinifaciens DSM 2489] gi|328447255|gb|AEB12971.1| Chromosomal replication initiator protein dnaA [Treponema succinifaciens DSM 2489] Length = 485 Score = 76.0 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 37/246 (15%), Positives = 82/246 (33%), Gaps = 38/246 (15%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI 83 QL + + + E A + P R +++ G G GK+ L Sbjct: 140 QLSED------YTFEKFVKGENSEFAYSASLAAAKEPGRRFNPLLIYGGVGLGKTHLMQS 193 Query: 84 W-----------------SDKSRSTRFSNIAKSLDSILIDTRK-------PVLLEDI--- 116 S + SL + K +LL+DI Sbjct: 194 IGNYIYNNPPEGKENIKICYISAENFLNEFTFSLRDGTSEKFKNKYRKLDVLLLDDIHFL 253 Query: 117 -DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 D + + LF+ +++ + ++ T L SR T + + P Sbjct: 254 EDKIQTQEE-LFYTFEELYRTHAQIVFTCDRPISELNGIEDRLKSRFSMGTTIDLQPPSY 312 Query: 176 DFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235 + + +++K ++ + + + +I + ++ ++ +DKM A +T +A Sbjct: 313 EIRKAILLKKLEIKKKSVPEDVIDFIAKNIQSNVRELGACLDKMIGYAELLQKNLTIDIA 372 Query: 236 AEVLKE 241 ++L + Sbjct: 373 KKLLSD 378 >gi|283853686|ref|ZP_06370917.1| Chromosomal replication initiator DnaA [Desulfovibrio sp. FW1012B] gi|283570927|gb|EFC18956.1| Chromosomal replication initiator DnaA [Desulfovibrio sp. FW1012B] Length = 453 Score = 75.6 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 42/242 (17%), Positives = 85/242 (35%), Gaps = 42/242 (17%) Query: 35 CLGISRDDLLVHSAIEQAV----RLIDSWPSWPSRVVILVGPSGSGKSCLANI------- 83 S D+ +V + E A + D S + + + G GK+ L Sbjct: 117 RFRFSYDEFVVGPSNELAYVASQGICDM--SLSADQLFISSAPGLGKTHLIQAMGKRLSH 174 Query: 84 ------------------WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI----DLLDF 121 ++++ + + + + +LLEDI D Sbjct: 175 TGGEDGRNLRVAYLSAEEFANRLVIALKTRQVEKFKAAFRENVDVLLLEDIHFFRDKPRI 234 Query: 122 NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 D L +I +++ L+ T+ P L SR+ + + I PD +++ Sbjct: 235 QDELLNTLI-ALNSRGCRLVFTSSFLPRDLAGLDAQLLSRISSGFLTVIDKPDLATRKRI 293 Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG---MGITRSLAAEV 238 + + A Q+ + +++ + R+ +L + NLAL I+ LA +V Sbjct: 294 LERKAAVHQVLLPDEVSTLLADRL---HADVRQLESCLQNLALKARLLNCRISVDLAWDV 350 Query: 239 LK 240 L+ Sbjct: 351 LR 352 >gi|163757767|ref|ZP_02164856.1| chromosomal replication initiation protein [Hoeflea phototrophica DFL-43] gi|162285269|gb|EDQ35551.1| chromosomal replication initiation protein [Hoeflea phototrophica DFL-43] Length = 485 Score = 75.6 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 40/219 (18%), Positives = 77/219 (35%), Gaps = 32/219 (14%) Query: 33 PRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRV--VILVGPSGSGKSCLANIWSDK 87 P + D + S+ A+ I + R + + G GK+ L + Sbjct: 143 PLDPQCTFDSYVEGSSNRVALAAARTIAEAGTGAVRFNPLFIHSNVGLGKTHLLQAIAAA 202 Query: 88 SRSTRFSNIAKSLDSILIDTRKPVLLED------------IDLLDFNDTQLF-------- 127 + S + L + R + D IDLL +D Q Sbjct: 203 ASSHSRNPRVVYLTAEYFMWRFATAIRDNDALSFKESLRNIDLLVIDDMQFLQGKSIQHE 262 Query: 128 --HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 H++N + +++ A P P + SRL+ ++I PD + +++ K Sbjct: 263 FCHLLNMLLDSARQVVVAADRAPWELESLDPRVRSRLQGGVAIEIEAPDYEMRLEILRKR 322 Query: 186 FADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 A Q + ID+ + A++ Q + S E +++ Sbjct: 323 LAIAQMEDATLDIDETILAHVAQNITSSGRELEGAFNQL 361 >gi|212703551|ref|ZP_03311679.1| hypothetical protein DESPIG_01596 [Desulfovibrio piger ATCC 29098] gi|212673051|gb|EEB33534.1| hypothetical protein DESPIG_01596 [Desulfovibrio piger ATCC 29098] Length = 510 Score = 75.6 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 40/265 (15%), Positives = 80/265 (30%), Gaps = 36/265 (13%) Query: 17 KNDQPKNKEEQLFFSFPR---------CLGISRDDLLVHSAIEQAVRL---IDSWPSWPS 64 + QP + Q P S DD +V AV I Sbjct: 125 RPSQPLWQPSQCSLPLPAPTLRPRTRQRWRFSFDDFVVGPCNAMAVAAAKDICHDGGCVE 184 Query: 65 RVVILVGPSGSGKSCLA----NIWSDKSRSTRFSNI-AKSLDSILIDTRKPVLLEDIDLL 119 + + SG GK+ + ++ R + + A+ L S + + +E Sbjct: 185 -TLFVSSASGLGKTHIMQSVGRAVQEQGGQARLAYLSAEGLASRYVAALRSNDVESFRAR 243 Query: 120 DFN------------------DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161 + + +I S+ + T+ P L S Sbjct: 244 LRDLDVLLLEDVHFLQGKEKMQDMVLTVIKSLQDRGGRAIFTSSFSPRELEKLDSQLVSH 303 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 + V + PD + ++ + Q+ + ++ + R++ + E + + Sbjct: 304 FCSGIVSPLERPDTEMCRHILERKAKSFQVLLPDEVCDLLAGRLQGDVRQLESCLKSLVF 363 Query: 222 LALSRGMGITRSLAAEVLKETQQCD 246 A G+ LA EVL++ D Sbjct: 364 KARMLNCGLNPELALEVLQQYATVD 388 >gi|218679350|ref|ZP_03527247.1| chromosomal replication initiation protein [Rhizobium etli CIAT 894] Length = 270 Score = 75.6 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 40/219 (18%), Positives = 78/219 (35%), Gaps = 32/219 (14%) Query: 33 PRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRV--VILVGPSGSGKSCLANIWSDK 87 P + D + S+ A+ I S R + + G GK+ L ++ Sbjct: 9 PLDSRFTFDTFVEGSSNRVALAAAKTIAEAGSGAVRFNPLFIHSAVGLGKTHLLQAIANA 68 Query: 88 S----RSTRFSNIAKS----LDSILIDTRKPVLLED----IDLLDFNDTQLF-------- 127 + R+ R + + I + L+D IDLL +D Q Sbjct: 69 AVQNPRALRVVYLTAEYFMWRFATAIRDNDALTLKDSLRNIDLLIIDDMQFLQGKMIQHE 128 Query: 128 --HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD-DDFLEKVIVK 184 H++N + +++ A P P + SRL+ ++ PD + LE + + Sbjct: 129 FCHLLNMLLDSAKQVVVAADRAPWELESLDPRVRSRLQGGVAIEFDAPDYEMRLEILKRR 188 Query: 185 MFADR----QIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 + A R + I L ++ + + S E +++ Sbjct: 189 LAAARLEDPSLEIPADLLQHVARNITASGRELEGAFNQL 227 >gi|218777862|ref|YP_002429180.1| chromosomal replication initiator protein DnaA [Desulfatibacillum alkenivorans AK-01] gi|226735801|sp|B8FFL8|DNAA_DESAA RecName: Full=Chromosomal replication initiator protein DnaA gi|218759246|gb|ACL01712.1| chromosomal replication initiator protein DnaA [Desulfatibacillum alkenivorans AK-01] Length = 454 Score = 75.6 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 45/258 (17%), Positives = 88/258 (34%), Gaps = 40/258 (15%) Query: 21 PKNKEEQLFF----SFPRCLG-------ISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66 P+ +QL PR + D +V + A S S S++ Sbjct: 93 PEEAPQQLCLPAFADIPRPSSGRLLNRDFTFDSFVVGDCNDFAYSAALSVASKRSKLHAP 152 Query: 67 VILVGPSGSGKSCLANIW-----SDKSRSTRFSNIAKSLDSILIDTRKP----------- 110 + L+ +G GKS L+ + F A+ + +I Sbjct: 153 LYLLAQTGLGKSHLSQAVGRQVMQESPEERVFYITAEDFTNEMIGALNTGTISSFKEKYR 212 Query: 111 -----VLLEDIDLLDF----NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161 ++LED+ L D F + +S+ + + L+ T+ P + SR Sbjct: 213 RNCDTLILEDVHFLSGKNRTQDELAFTL-DSLMETNKRLVFTSAYLPSEIPKMHDSMRSR 271 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 L A + + PD +++ + +I + +A ++ + + E + + Sbjct: 272 LNAGVISSLEAPDFRMRMRILQRKANSAKIALPMDVAEFMASELTGDIRHLESGIKGLAA 331 Query: 222 LALSRGMGITRSLAAEVL 239 G GI +A EV+ Sbjct: 332 RNSIMGRGIDLKMAREVV 349 >gi|319403601|emb|CBI77186.1| chromosomal replication initiator protein DnaA [Bartonella rochalimae ATCC BAA-1498] Length = 524 Score = 75.2 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 33/207 (15%), Positives = 65/207 (31%), Gaps = 32/207 (15%) Query: 29 FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP-----SRVVILVGPSGSGKSCLANI 83 F P + ++ + ++ A+ S + + G GK+ L Sbjct: 175 VFGSPLDSRYTFENFIEGTSNRVALAAARSIAEGHKSSLRFNPLFIYASVGLGKTHLLQA 234 Query: 84 WSDKSRSTRFSNIAKSLDSILIDTRKPVLLED------------IDLLDFNDTQLF---- 127 + + L + R V + D IDLL +D Q Sbjct: 235 IAAAALKRLTPARVIYLTAEYFMWRFAVAIRDNDALSFKEQLRDIDLLIIDDMQFLQGKS 294 Query: 128 ------HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 H++N + +++ A P + SRL+ ++I PD + + Sbjct: 295 IQREFCHLLNMLLDSAKQVIVAADRPPAELESLDLRVRSRLQGGVALEIETPDYEMRLAM 354 Query: 182 IVKMFADRQ-----IFIDKKLAAYIVQ 203 + + Q I I ++ YI + Sbjct: 355 LRQRLKVAQQDDNMITISDEILEYIAK 381 >gi|323143414|ref|ZP_08078099.1| putative chromosomal replication initiator protein DnaA [Succinatimonas hippei YIT 12066] gi|322416819|gb|EFY07468.1| putative chromosomal replication initiator protein DnaA [Succinatimonas hippei YIT 12066] Length = 494 Score = 75.2 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 30/221 (13%), Positives = 68/221 (30%), Gaps = 35/221 (15%) Query: 35 CLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--- 87 + ++ + AV + + + + G SG GK+ L +++ Sbjct: 151 NPNKTFENYVTDPENKLLYATAVAVAANPGTSNYNPFYIYGASGLGKTHLLFAIANRIRE 210 Query: 88 ---------------------SRSTRFSNIAKSLDSILID---TRKPVLLEDIDLLDFND 123 S + N D + +++DI D Sbjct: 211 THPEVSLIYTRAEEFIRHYVESMARIKKNPYDDERMHFQDLYTSYDVFIVDDIQNFIKAD 270 Query: 124 ---TQLFHII-NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179 F II + I Q + L++ + P + P L SR + ++ P + Sbjct: 271 KTRDTFFDIIADFIDQPNRQLILASDVPPGNLKNFNPRLTSRFGSGVCCEVVPPSPETRA 330 Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 + +K + + + YI + ++ E + ++ Sbjct: 331 AITLKKCKELNADLPDDIIQYIALHIRSNVREIEGAIKTLN 371 >gi|295106381|emb|CBL03924.1| chromosomal replication initiator protein DnaA [Gordonibacter pamelaeae 7-10-1-b] Length = 534 Score = 75.2 bits (184), Expect = 8e-12, Method: Composition-based stats. Identities = 40/245 (16%), Positives = 79/245 (32%), Gaps = 52/245 (21%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV----VIL 69 D+ + D P L F ++ ++ + A + + P + + + Sbjct: 175 DEDETDGPDRPTSTLTF----------ENFVIGDSNRMAYSMAVAVAEMPGKAHLNPLFI 224 Query: 70 VGPSGSGKSCLANIWSD------KSRSTRFSNIAKSLDSILIDTRKP------------- 110 G SG GK+ L + + ST + + A+ L + + Sbjct: 225 YGKSGLGKTHLLRAIQNYVHETMPNLSTIYVDSAELLSDYMEASAAHDKEKSSYKNFKTR 284 Query: 111 ------VLLEDIDLLDFNDTQL---FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161 +L++D+ L L F I N + ++++A P + + SR Sbjct: 285 YEEADVLLIDDVQYLQGKKQTLDIVFQIFNKLTGQGRQVVLSADRAPKNIDID-ERYKSR 343 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFAD--------RQIFIDKKLAAYIVQRMERSLVFAE 213 + I P+ + IVK F D I + YI + ++ + Sbjct: 344 FNSGGTFDIQPPEIETKLG-IVKSFVDEYRATEGKASFAIPDDIQMYIAESSSSNIRELK 402 Query: 214 KLVDK 218 V K Sbjct: 403 SAVTK 407 >gi|254694807|ref|ZP_05156635.1| chromosomal replication initiation protein [Brucella abortus bv. 3 str. Tulya] Length = 540 Score = 75.2 bits (184), Expect = 8e-12, Method: Composition-based stats. Identities = 30/205 (14%), Positives = 68/205 (33%), Gaps = 28/205 (13%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIWSDK 87 P + D + ++ A+ + S + + G GK+ L + Sbjct: 195 PLDPRYTFDTFVDGASNRVALAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 254 Query: 88 SRSTRFSNIAKSLDSILIDTRKPVLLED------------IDLLDFNDTQLF-------- 127 + + L + R + D IDLL +D Q Sbjct: 255 AFQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRDIDLLVIDDMQFLQGKSIQHE 314 Query: 128 --HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 H++N++ +++ A P + SRL+ ++++ PD + +++ + Sbjct: 315 FCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRRR 374 Query: 186 FADRQIF-IDKKLAAYIVQRMERSL 209 A Q + I+ + R++ Sbjct: 375 LASAQCEDASLDIGEEILAHVARTV 399 >gi|927586|gb|AAA85542.1| dnaA [Mycobacterium bovis] Length = 259 Score = 74.8 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 26/191 (13%), Positives = 68/191 (35%), Gaps = 25/191 (13%) Query: 76 GKSCLANIWSDKSRSTRFSNI---AKSLDSILIDTRKP------------------VLLE 114 GK+ L + + F + S + D +L++ Sbjct: 1 GKTHLLHA-AGNYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVD 59 Query: 115 DIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 DI ++ + + F N++H + +++++ P L + + + + Sbjct: 60 DIQFIEGKEGIQEEFFRTFNTLHNANKQIVISSDRPPKQLATLEDRLRTDFEWGLITDVQ 119 Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231 P+ + ++ K ++ + + I +ER++ E + ++ A I Sbjct: 120 PPELETRIAILRKKAQXERLAVPDGVLELIASSIERNIRVLEXALIRVTPFASLNKTPID 179 Query: 232 RSLAAEVLKET 242 ++LA VL++ Sbjct: 180 KALAEIVLRDL 190 >gi|281356509|ref|ZP_06243001.1| chromosomal replication initiator protein DnaA [Victivallis vadensis ATCC BAA-548] gi|281317201|gb|EFB01223.1| chromosomal replication initiator protein DnaA [Victivallis vadensis ATCC BAA-548] Length = 460 Score = 74.4 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 35/260 (13%), Positives = 84/260 (32%), Gaps = 39/260 (15%) Query: 17 KNDQPKNKEEQLFFSFPRCLGI-----SRDDLLVHSAIEQAVRLIDSWPSWPS--RVVIL 69 + +P + Q PR + ++ +V A + P + L Sbjct: 103 RPSEPAAEPVQ-----PRRPRSCMDEHTFENFVVGGENRHAFAAAKTAAEEPGLYNPLYL 157 Query: 70 VGPSGSGKSCLANIWSDKSRSTRFSNI--AKSLDSILIDTRKPV-----LLE-------- 114 G SG GK+ L + + R + + D +L D + L E Sbjct: 158 YGASGVGKTHLLQAVTVEVRRRNPKAVVRYATCDELLNDFYNLLQQHRSLSEFRSSVRDV 217 Query: 115 ---------DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 + + F++ N+++ +++T+ P L SR ++ Sbjct: 218 DVLLVDDVHSLAKKTQMQEEFFNLFNTLYSQRKQIILTSDRQPCEISDLDKRLESRFESG 277 Query: 166 TVVKISLPDDDFLEKVIVKMFAD--RQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNL 222 ++ +P+ + ++ D + + + ++ + ++ ++ Sbjct: 278 MTAEVGVPEFEARLAILRMWRNDVLNKAPLGDEFLEFLAANISSNVRRLHGAFIRLASYA 337 Query: 223 ALSRGMGITRSLAAEVLKET 242 +LS +T A E+L Sbjct: 338 SLSGNDKLTIEQAEELLHSQ 357 >gi|218887171|ref|YP_002436492.1| chromosomal replication initiator protein DnaA [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758125|gb|ACL09024.1| chromosomal replication initiator protein DnaA [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 444 Score = 74.0 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 41/240 (17%), Positives = 78/240 (32%), Gaps = 42/240 (17%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLL--------VHSAIEQAVRLIDSWPSWPSR 65 + QL +P + D L V SA E A D Sbjct: 80 GSPQAAPAPKTARQL--DYPFGARFTFDTFLSNRKNQFPVASAKEVARDGRD-PHDRVYN 136 Query: 66 VVILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILID--- 106 ++ G +G+GK+ L +++ TRF ++ + + Sbjct: 137 PFVVCGGNGNGKTHLLRAIANELSRSRDENAIFCGPVDELGTRFEGLSATGAGAAQERQQ 196 Query: 107 ------TRKPVLLEDI----DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156 + ++++D+ D D F + H + ++ P Sbjct: 197 ARSRLCAHEVLVVDDLQRLRDQPFLQDELTF-AFDHFHDHGKQMVFACSGKLADLDFLSP 255 Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216 L SRL+ +V++ PD D K I + R I + K+ + + QR R + ++ Sbjct: 256 KLRSRLEWGLIVELREPDLDVRLKFIQQQSRSRNIQLSKEHSLTLAQRF-REFRHLQGIL 314 >gi|325108799|ref|YP_004269867.1| replication initiation factor DnaA protein [Planctomyces brasiliensis DSM 5305] gi|324969067|gb|ADY59845.1| Chromosomal replication initiator DnaA domain protein [Planctomyces brasiliensis DSM 5305] Length = 341 Score = 74.0 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 39/233 (16%), Positives = 84/233 (36%), Gaps = 34/233 (14%) Query: 42 DLLVHSAIEQAVRLIDS----WPSWPSRVVILVGPSGSGKSCL----ANIWSDKSRSTR- 92 D + E AV ++ P+ ++ L GPSG+GKS L + + R Sbjct: 8 DFIPLPENEFAVAAVERLFAETPAIDPPLLFLFGPSGAGKSHLVMQALEAFHHRYEGVRQ 67 Query: 93 -----FSNIAKSLDSILIDTRKPVLLEDI--------------DLLDFNDTQLFHIINSI 133 + +++S + LE++ D + +L +I+ I Sbjct: 68 RTLSAYEFATLNMESAAGEEETAAQLEELADLDVFVCEGVQHFDRQTWLQKKLILLIDDI 127 Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193 + +++T++ ++ P L SR + +++P + +++I A + I Sbjct: 128 LRSGGRVILTSQLPVGAYEQTHPKLVSRFHSGVTASMAMPGVESRKRLIQYFAAIHDLEI 187 Query: 194 DKKLAAYIVQRM---ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 + ++M R + A ++ + L I E+L Q Sbjct: 188 HPTAVEQLARKMPVSPREMHGAIVQLEAVQRL---EEREIDNGTVEELLAFQQ 237 >gi|258406588|ref|YP_003199330.1| Chromosomal replication initiator DnaA domain-containing protein [Desulfohalobium retbaense DSM 5692] gi|257798815|gb|ACV69752.1| Chromosomal replication initiator DnaA domain protein [Desulfohalobium retbaense DSM 5692] Length = 451 Score = 74.0 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 82/233 (35%), Gaps = 35/233 (15%) Query: 9 SFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-- 66 S P +K+ P N + F ++ L + + P + Sbjct: 102 SLVAP--RKHTPPTNGSDSYTF----------ENFLTNKKNYFPYASAREAIAAPGKKYN 149 Query: 67 -VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRK 109 ++L G SG+GK+ L + R T + + + Sbjct: 150 PLVLSGGSGTGKTHLLKAMAQAFRDRFPEQKILYFTVDDLHTFYKEAGGDMARSSLIASH 209 Query: 110 PVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 +L++D+ L ++ T+L I N+ ++ L R G P L SRL+ Sbjct: 210 LLLIDDLQSLQLYNYLQTELLLIFNAQYEQSGQLAFACRGKLPECGFLEPTLLSRLEWGL 269 Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 +V + PD + + + +++ + ++ + Q + + + ++ K+ Sbjct: 270 MVHLKTPDLELRVQYLHTANQKKRLGLSRRHILLLGQHF-KDFRYLQGVITKL 321 >gi|241202756|ref|YP_002973852.1| chromosomal replication initiation protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856646|gb|ACS54313.1| chromosomal replication initiator protein DnaA [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 516 Score = 74.0 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 35/207 (16%), Positives = 75/207 (36%), Gaps = 28/207 (13%) Query: 33 PRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRV--VILVGPSGSGKSCLANIWSDK 87 P + D + S+ A+ I R + + G GK+ L ++ Sbjct: 174 PLDSRFTFDTFVEGSSNRVALAAAKTIAEAGQGAVRFNPLFIHSTVGLGKTHLLQAVANA 233 Query: 88 S----RSTRFSNIAKS----LDSILIDTRKPVLLED----IDLLDFNDTQLF-------- 127 + R+ R + + I + L+D IDLL +D Q Sbjct: 234 AVQNPRALRVVYLTAEYFMWRFATAIRDNDALTLKDSLRNIDLLIIDDMQFLQGKMIQHE 293 Query: 128 --HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 H++N + +++ A P P + SRL+ ++ PD + +++ + Sbjct: 294 FCHLLNMLLDSAKQVVVAADRAPWELESLDPRVRSRLQGGVAIEFDAPDYEMRLEILKRR 353 Query: 186 FADRQIF-IDKKLAAYIVQRMERSLVF 211 A ++ ++ A ++Q + R++ Sbjct: 354 LAVARLEDPSLEIPAELLQHVARNVTA 380 >gi|261215132|ref|ZP_05929413.1| chromosomal replication initiator protein dnaA [Brucella abortus bv. 3 str. Tulya] gi|260916739|gb|EEX83600.1| chromosomal replication initiator protein dnaA [Brucella abortus bv. 3 str. Tulya] Length = 494 Score = 74.0 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 30/205 (14%), Positives = 68/205 (33%), Gaps = 28/205 (13%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIWSDK 87 P + D + ++ A+ + S + + G GK+ L + Sbjct: 149 PLDPRYTFDTFVDGASNRVALAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 208 Query: 88 SRSTRFSNIAKSLDSILIDTRKPVLLED------------IDLLDFNDTQLF-------- 127 + + L + R + D IDLL +D Q Sbjct: 209 AFQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRDIDLLVIDDMQFLQGKSIQHE 268 Query: 128 --HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 H++N++ +++ A P + SRL+ ++++ PD + +++ + Sbjct: 269 FCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRRR 328 Query: 186 FADRQIF-IDKKLAAYIVQRMERSL 209 A Q + I+ + R++ Sbjct: 329 LASAQCEDASLDIGEEILAHVARTV 353 >gi|329891034|ref|ZP_08269377.1| chromosomal replication initiator protein dnaA [Brevundimonas diminuta ATCC 11568] gi|328846335|gb|EGF95899.1| chromosomal replication initiator protein dnaA [Brevundimonas diminuta ATCC 11568] Length = 318 Score = 73.6 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 36/210 (17%), Positives = 73/210 (34%), Gaps = 29/210 (13%) Query: 59 WPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL-------------- 104 W V GP G GK+ L N + +++ R L + Sbjct: 4 WADGHFNPVFFCGPYGYGKTHLLNAIAWEAQRLRPDAKVVYLTAERFLSTFVRAMQDRST 63 Query: 105 ------IDTRKPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 + + +LL+D+ + +L + + ++ + ++++A P++ Sbjct: 64 AAFKESLRSADMLLLDDVQFVGGKTSTQEELLNTLTALIEDGKRIVLSADRAPMALTDVE 123 Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMF-ADRQIFI-----DKKLAAYIVQRMERSL 209 P L S L A + D D V A Q+ + + +++ R S+ Sbjct: 124 PRLRSHLAAGLTCPVEAADRDLKVAVAQSRLNALAQLGVVTGEARADVLEHLIDRTPGSM 183 Query: 210 VFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 E V+ + +A SR +T +L Sbjct: 184 RELEGAVNTLAAVAGSRLSALTVDEVQSLL 213 >gi|116250144|ref|YP_765982.1| chromosomal replication initiation protein [Rhizobium leguminosarum bv. viciae 3841] gi|123384972|sp|Q1MMD6|DNAA_RHIL3 RecName: Full=Chromosomal replication initiator protein DnaA gi|115254792|emb|CAK05866.1| putative chromosomal replication initiator protein [Rhizobium leguminosarum bv. viciae 3841] Length = 482 Score = 73.6 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 34/207 (16%), Positives = 71/207 (34%), Gaps = 28/207 (13%) Query: 33 PRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRV--VILVGPSGSGKSCLANIWSDK 87 P + D + S+ A+ I R + + G GK+ L ++ Sbjct: 140 PLDSRFTFDTFVEGSSNRVALAAAKTIAEAGQGAVRFNPLFIHSTVGLGKTHLLQAVANA 199 Query: 88 SRSTRFSNIAKSLDSILIDTRKPVLLED------------IDLLDFNDTQLF-------- 127 + S L + R + D IDLL +D Q Sbjct: 200 AVQNPRSLRVVYLTAEYFMWRFATAIRDNDALTLKDSLRNIDLLIIDDMQFLQGKMIQHE 259 Query: 128 --HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 H++N + +++ A P P + SRL+ ++ PD + +++ + Sbjct: 260 FCHLLNMLLDSAKQVVVAADRAPWELESLDPRVRSRLQGGVAIEFDAPDYEMRLEILKRR 319 Query: 186 FADRQIF-IDKKLAAYIVQRMERSLVF 211 A ++ ++ A ++Q + R++ Sbjct: 320 LAVARLEDPSLEIPAELLQHVARNVTA 346 >gi|319779750|ref|YP_004139226.1| chromosomal replication initiator protein DnaA [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317165638|gb|ADV09176.1| chromosomal replication initiator protein DnaA [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 515 Score = 73.3 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 37/214 (17%), Positives = 67/214 (31%), Gaps = 46/214 (21%) Query: 33 PRCLGISRDDLLVHSAIEQ--------------AVRLIDSWPSWPSRVVILVGPSGSGKS 78 P + + + AVR + L G GK+ Sbjct: 171 PLDPRYTFGSFIEGPSNRVAFAAAKAVAESQSSAVRF---------NPLFLHATVGLGKT 221 Query: 79 CLANIWSD-------KSRSTRFSNIAK--SLDSILIDTRKPVLLE---DIDLLDFNDTQL 126 L + KSR + + + D L E DIDLL +D Q Sbjct: 222 HLLQAIAAESLKQNPKSRVVYLTAEYFMWRFATAIRDNNALTLKEQLRDIDLLIIDDMQF 281 Query: 127 F----------HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 H+IN + +++ A P P + SRL +++S PD Sbjct: 282 LQGKSIQHEFCHLINMLLDSAKQVVVAADRPPSELESLEPRVRSRLNGGVALEMSAPDFA 341 Query: 177 FLEKVI-VKMFADRQIFIDKKLAAYIVQRMERSL 209 ++ +++ R ++ I+ + R++ Sbjct: 342 MRLGMLKLRLATARSDDASLDISEEILNHVARTV 375 >gi|110632363|ref|YP_672571.1| chromosomal replication initiation protein [Mesorhizobium sp. BNC1] gi|110283347|gb|ABG61406.1| chromosomal replication initiator protein DnaA [Chelativorans sp. BNC1] Length = 479 Score = 73.3 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 34/219 (15%), Positives = 72/219 (32%), Gaps = 32/219 (14%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCLANIWSDK 87 P + + + ++ A + + + + G GK+ L + Sbjct: 135 PLDSRFTFESFIEGASNRVAYAAARTVAELAAGAIRFNPLFIHASVGLGKTHLLQAVAAA 194 Query: 88 SRSTRFSNIAKSLDSI--------LIDTRKPVLLE----DIDLLDFNDTQLF-------- 127 S R + L + I + L+ DIDLL +D Q Sbjct: 195 SLKRRPQSRVVYLTAEYFMWRFATAIRDNNALTLKEQLRDIDLLIIDDMQFLQGKSIQNE 254 Query: 128 --HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 H++N + +++ A P + SRL +++ PD D ++ + Sbjct: 255 FCHLLNMLLDSARQVVVAADRPVSELESLEPRVKSRLNGGVSLEMLTPDYDLRLAMLKQR 314 Query: 186 FA-----DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 A D + I ++ ++ Q + S E +++ Sbjct: 315 LACARVEDPSLDIPLEVLEHVAQVVTGSGRELEGAFNQL 353 >gi|317155007|ref|YP_004123055.1| Chromosomal replication initiator DnaA domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316945258|gb|ADU64309.1| Chromosomal replication initiator DnaA domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 460 Score = 73.3 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 31/216 (14%), Positives = 73/216 (33%), Gaps = 28/216 (12%) Query: 30 FSFPRCLGISRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 FP + D L++ A + S + ++ GP GSGK+ L + Sbjct: 122 IDFPFGQEFTFDTFLINKKNYFPIASAREVAKQSASLFNPFIV-CGPGGSGKTHLIRAVA 180 Query: 86 DK-----SRSTRFSNIAKSLDSIL--------------IDTRKPVLLEDIDLLDFN---D 123 ++ S F L+S + + ++D + + Sbjct: 181 NEISKKHDHSKIFIGSMDELNSFYTIRFKGDPFRARNHLFEYNFLFIDDFQKIREHPHFQ 240 Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 ++ ++ N + +++ R S+ L SRL +V + D + I Sbjct: 241 QEVVNLFNHFYDNKKQMIICCRDKLASYDFLDESLQSRLGWGLIVTLKEADLEIRVGYIQ 300 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 + +++ + K+ + Q + + ++ K+ Sbjct: 301 RQCRLKRLLLSKEQVLTLAQHFT-DFRYLQGVLLKL 335 >gi|297620521|ref|YP_003708658.1| Chromosomal replication initiator protein dnaA [Waddlia chondrophila WSU 86-1044] gi|297375822|gb|ADI37652.1| Chromosomal replication initiator protein dnaA [Waddlia chondrophila WSU 86-1044] Length = 450 Score = 72.5 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 29/236 (12%), Positives = 82/236 (34%), Gaps = 32/236 (13%) Query: 38 ISRDDLLVHSAIEQ---AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD-------- 86 + + A + A + + P + + G G GK+ + + Sbjct: 119 YRFELFIEGPANQFVKSAAMGVAARPGQSYNPLFIHGGVGLGKTHILHSIGHYIHERNKK 178 Query: 87 -----KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIH------- 134 + +++ SL + +D K +D+L +D Q + N ++ Sbjct: 179 LRVQCITTEAFINDLVDSLRNKSVDQLKRFYRSQVDVLLVDDIQF--LQNRLNFEEEFCN 236 Query: 135 ------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 + +++T+ P + + +R++ V + +P+ + ++ Sbjct: 237 TFETLINQNKQIVITSDKPPSQLNLS-ERMVARMEWGLVAHLGVPELETRVAILQHKAQQ 295 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 + + + +A +I + + ++ E ++++ + IT L L+E Sbjct: 296 KGLDLPNNVAFFIAEHIYNNVRQLEGAINRLSAHCKLLNLNITEELVETTLREMLH 351 >gi|16904917|gb|AAL30942.1| DNA polymerase initiator protein [Streptococcus pneumoniae] gi|16904919|gb|AAL30943.1| DNA polymerase initiator protein [Streptococcus pneumoniae] gi|16904921|gb|AAL30944.1| DNA polymerase initiator protein [Streptococcus pneumoniae] gi|16904923|gb|AAL30945.1| DNA polymerase initiator protein [Streptococcus pneumoniae] gi|16904925|gb|AAL30946.1| DNA polymerase initiator protein [Streptococcus pneumoniae] gi|16904927|gb|AAL30947.1| DNA polymerase initiator protein [Streptococcus pneumoniae] gi|16904929|gb|AAL30948.1| DNA polymerase initiator protein [Streptococcus pneumoniae] gi|16904931|gb|AAL30949.1| DNA polymerase initiator protein [Streptococcus pneumoniae] gi|16904935|gb|AAL30951.1| DNA polymerase initiator protein [Streptococcus pneumoniae] gi|16904937|gb|AAL30952.1| DNA polymerase initiator protein [Streptococcus pneumoniae] Length = 163 Score = 72.5 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 24/158 (15%), Positives = 50/158 (31%), Gaps = 24/158 (15%) Query: 69 LVGPSGSGKSCLANIWSDK-----SRSTRFSNIAKSLDSILID---------------TR 108 + G G GK+ L N ++ + A+S + +D + Sbjct: 1 IYGGPGLGKTHLLNAIGNEILKNIPNARVKYIPAESFINDFLDHLRLGEMEKFKKTYRSL 60 Query: 109 KPVLLEDIDLLDF----NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164 +L++DI L + F+ N++H +++T+ P L +R Sbjct: 61 DLLLIDDIQSLSGKKVATQEEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSW 120 Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 I+ PD + ++ Y+ Sbjct: 121 GLTQTITPPDFETRIAILQSKTEHLGYNFQSDTLEYLA 158 >gi|303249148|ref|ZP_07335388.1| Chromosomal replication initiator DnaA [Desulfovibrio fructosovorans JJ] gi|302489473|gb|EFL49420.1| Chromosomal replication initiator DnaA [Desulfovibrio fructosovorans JJ] Length = 454 Score = 72.5 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 42/241 (17%), Positives = 83/241 (34%), Gaps = 40/241 (16%) Query: 35 CLGISRDDLLVHSAIEQAV----RLIDSWPSWPSRVVILVGPSGSGKSCLANI------W 84 S D+ +V E A + D S + + + G GK+ L + Sbjct: 118 RFRFSYDEFVVGPCNELAYVASRGICDLTLS--AEQLFISSAPGLGKTHLIQAMGRQLSF 175 Query: 85 SDKSRSTRFSNIAKSLDSIL-----------IDTRKPVLLEDIDLLDFNDTQLF------ 127 + S + ++ K E++D+L D F Sbjct: 176 CGDQEHKKLRVAYLSAEEFANRLVMALKTKQVERFKAAFRENVDVLLLEDIHFFRDKPRI 235 Query: 128 --HIIN---SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 ++N ++ L+ T+ P L SR+ + + I PD + ++++ Sbjct: 236 QDELLNTLKALQSRGCRLVFTSSFLPKDLTGLDAQLLSRINSGFLTVIDKPDRETRKRIL 295 Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG---MGITRSLAAEVL 239 A Q+ + +++ + R+ +L + NLAL GI+ LA +VL Sbjct: 296 ECKAAVHQVLLPDEVSMLLADRL---CADVRQLESCLQNLALKARLLNCGISVDLAWDVL 352 Query: 240 K 240 + Sbjct: 353 R 353 >gi|300870226|ref|YP_003785097.1| chromosomal replication initiation protein [Brachyspira pilosicoli 95/1000] gi|300687925|gb|ADK30596.1| chromosomal replication initiation protein [Brachyspira pilosicoli 95/1000] Length = 452 Score = 72.5 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 33/220 (15%), Positives = 70/220 (31%), Gaps = 28/220 (12%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRFS 94 D+ + S + P R + + G G GK+ L + + Sbjct: 119 FKFDNFIEGSNNKFVFAAAKLVAEKPGREYNPLYIYGSVGIGKTHLLQAIGNYYLENNPN 178 Query: 95 NIAKSLDSILID--------------------TRKPVLLEDIDLLDFNDT---QLFHIIN 131 +D + LL+D+ LL+ +LF I Sbjct: 179 AKVNYIDGSGFRDEYIYGLQTKKSDNFKKKYKSLDMFLLDDLQLLESAQETSKELFEIFQ 238 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 ++ ++ + P L +R + + ++ I P + +I + D Sbjct: 239 ALDNACKQMVFVSDKPPKELRNIEARLKNRFEKSLILSIEPPQYETRLAIIERKLIDLNT 298 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231 ID+++ Y+ + + + E + L++ M IT Sbjct: 299 TIDEEVVKYMAENITTDVRKIEGAIRA--YLSVRDLMKIT 336 >gi|222084650|ref|YP_002543179.1| chromosomal replication initiator protein DnaA [Agrobacterium radiobacter K84] gi|221722098|gb|ACM25254.1| chromosomal replication initiator protein DnaA [Agrobacterium radiobacter K84] Length = 516 Score = 72.1 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 32/207 (15%), Positives = 74/207 (35%), Gaps = 28/207 (13%) Query: 33 PRCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRV--VILVGPSGSGKSCLANIWSDK 87 P + D + S+ A + I S R + + G GK+ L ++ Sbjct: 174 PLDSRFTFDTYVEGSSNRVSLAAAKTIAEAGSGAVRFNPLFVHSTVGLGKTHLLQAIANA 233 Query: 88 S--RSTRFSNIAKSLD------SILIDTRKPVLLED----IDLLDFNDTQLF-------- 127 + + + + + I + L+D IDLL +D Q Sbjct: 234 AVQNPRNLRVVYLTAEYFMWRFATAIRDNDALTLKDSLRNIDLLIIDDMQFLQGKMIQHE 293 Query: 128 --HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 H++N + +++ A P P + SRL+ +++ PD + +++ + Sbjct: 294 FCHLLNMLLDSAKQVVVAADRAPWELESLDPRVRSRLQGGVAIEVEAPDYEMRLEILKRR 353 Query: 186 FADRQIF-IDKKLAAYIVQRMERSLVF 211 ++ ++ A ++ + R++ Sbjct: 354 LEAARLEDPSLEIPAELLSHVARNVTA 380 >gi|197294170|ref|YP_001798711.1| Chromosomal replication initiator protein [Candidatus Phytoplasma australiense] gi|171853497|emb|CAM11336.1| Chromosomal replication initiator protein [Candidatus Phytoplasma australiense] Length = 455 Score = 72.1 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 37/236 (15%), Positives = 87/236 (36%), Gaps = 31/236 (13%) Query: 35 CLGISRDDLLVHSAIEQAV----RLIDSWPSWPSRVVILVGPSGSGKSCLA-----NIWS 85 S D+ +V + A ++I+ + + G +G GK+ L ++ Sbjct: 115 NPKYSLDNFVVGKGNKFAFTIAQKIIEEDKISVNPF-YIFGQTGIGKTHLIQGIGNHLIQ 173 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFN---DTQLFH 128 K++ + ++ RK +L++DI ++ + F Sbjct: 174 KKNKKVLYVKADGFIEEFTNQLRKAKMEDFNEKYRDIDVLLVDDIQIMAGATRTQMEFFK 233 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 + + ++ +++T+ + L SR + +V + PD D ++ K + Sbjct: 234 LFDYLYLNQKQIIITSDKQASELKNIMNRLTSRFEGGLMVDVQNPDFDHRIHILKKKILE 293 Query: 189 RQ----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 Q + + K++ I ++ E + ++ N A + G I +A E L+ Sbjct: 294 FQNNNPLKVQKEVVEMICSVFVNNIREMEGALLRLLNYAKTFGQEINLKVAGEALE 349 >gi|304319871|ref|YP_003853514.1| chromosomal replication initiator protein DnaA [Parvularcula bermudensis HTCC2503] gi|303298774|gb|ADM08373.1| chromosomal replication initiator protein DnaA [Parvularcula bermudensis HTCC2503] Length = 503 Score = 72.1 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 54/246 (21%), Positives = 97/246 (39%), Gaps = 36/246 (14%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWP-SRVVILVGPSGSGKSCLANIWSDKSRSTRF 93 + + + V+ AV I+ S V + G G GKS L + +++ Sbjct: 164 NVSQTFESFSVNDTNRMAVLAIEQIIEGAGSPVTYIYGGVGRGKSHLLSAAANQFLRRYP 223 Query: 94 SN--IAKSLDSILIDTRKPVL----------LEDIDLLDFND-----------TQLFHII 130 I + DS++ D ++ L D DLL F+D +L +I Sbjct: 224 GRRLIFLTYDSLVADVSDAIVSRSLKELRAHLRDTDLLIFDDVHMLRGRKRTQEELACLI 283 Query: 131 NSIHQYDSSLLMTARTFPVSWG--VCLPDLCSRLKAATVVKISLPDDDFLEKVIVK---M 185 + Q +L+T P L L RL V ++ PD D K+ + + Sbjct: 284 ERLEQMGKPILVTGAVSPKELAETGILCRLTDRLGGGARVPLNRPDYDLRLKIAQRCSDV 343 Query: 186 FADR-QIFIDKKLAAYIVQRME---RSLVFAEKLVD---KMDNLALSRGMGITRSLAAEV 238 F R + + ++ YI ++ E R L+ A + + ++D LS+ T++ A+V Sbjct: 344 FTLRTGLQMPRRHIEYIARKSEGCVRELLGAMRFYELSVQLDPTVLSKDDQETQAHLAQV 403 Query: 239 LKETQQ 244 LK ++ Sbjct: 404 LKSRRR 409 >gi|319898309|ref|YP_004158402.1| chromosomal replication initiator protein DnaA [Bartonella clarridgeiae 73] gi|319402273|emb|CBI75812.1| chromosomal replication initiator protein DnaA [Bartonella clarridgeiae 73] Length = 520 Score = 72.1 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 36/207 (17%), Positives = 69/207 (33%), Gaps = 32/207 (15%) Query: 29 FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP-----SRVVILVGPSGSGKSCLANI 83 F P + + + S+ A+ S + + G GK+ L Sbjct: 171 VFGSPLDSRYTFESFVEGSSNRVALAAARSIAEGHKSSLRFNPLFIYASVGLGKTHLLQA 230 Query: 84 WSDKS--RSTRFSNIAKSLDSILIDTRKPVL----------LEDIDLLDFNDTQLF---- 127 + + RST I + + + + L DIDLL +D Q Sbjct: 231 IAAAALKRSTPVRVIYLTAEYFMWRFATAIRDNDALSFKEQLRDIDLLIIDDMQFLQGKS 290 Query: 128 ------HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 H++N + +++ A P + SRL+ ++I PD + ++ Sbjct: 291 IQREFCHLLNMLLDSAKQVIVAADRPPAELESLDLRVRSRLQGGVALEIEAPDYEMRLEI 350 Query: 182 IVKMFADRQ-----IFIDKKLAAYIVQ 203 + + Q I I ++ YI + Sbjct: 351 LRQRLKAAQQDDNMITISDEILEYIAK 377 >gi|26553453|ref|NP_757387.1| chromosomal replication initiation protein [Mycoplasma penetrans HF-2] gi|26453459|dbj|BAC43791.1| chromosomal replication initiator protein [Mycoplasma penetrans HF-2] Length = 452 Score = 72.1 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 41/258 (15%), Positives = 98/258 (37%), Gaps = 50/258 (19%) Query: 4 MKEDYSFFVPDKQKNDQPKN------KEEQLFFSFPRCLGISRDDLLVHSAIEQAVR--- 54 M + + F K++ D K K + L + + ++ + + A + Sbjct: 74 MNSNLNVFFITKEEKDINKELPTIEEKPKTLEINPTLDSRFTFENYTIGMFNKNAFKAAS 133 Query: 55 -LIDSWPSWPSRVVILVGPSGSGKSCLANIW---------------------------SD 86 ++ +W + +++ G +G GK+ L + + Sbjct: 134 LFLEENNNW--KTLLIYGSTGLGKTHLLHAVGNKFVQLFPQKNLMYIQTEDFLEKIYKAI 191 Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMT 143 T+ S D++ + +L++DI L+ + F+I N ++ + ++MT Sbjct: 192 SEGGTKVEEFKNSFDNVDL-----LLIDDIQFLNNKEKLNEIFFNIFNRLNSKNKYIVMT 246 Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF--IDKKLAAYI 201 + P S + + SR + +KI+ PD + ++K+I++ +I +I Sbjct: 247 SDKLPTSLKIDDR-MISRFNSGLSIKINKPDTESIKKIIIENIKKSRIKNPFSNLAIEFI 305 Query: 202 VQRMERSLVFAEKLVDKM 219 R + E +++K+ Sbjct: 306 ALRFNSDIRTLEGVLNKI 323 >gi|110832862|ref|YP_691721.1| chromosomal replication initiator protein DnaA [Alcanivorax borkumensis SK2] gi|123345870|sp|Q0VT30|DNAA_ALCBS RecName: Full=Chromosomal replication initiator protein DnaA gi|110645973|emb|CAL15449.1| chromosomal replication initiator protein DnaA [Alcanivorax borkumensis SK2] Length = 474 Score = 72.1 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 34/244 (13%), Positives = 76/244 (31%), Gaps = 45/244 (18%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSG-------------KSCLA 81 G + + + A P+ G K+ L Sbjct: 139 NTGFTFSTFVEGKSNRMAAAAAQQVAENPASH---------GYNPLLLYGGVGLGKTHLM 189 Query: 82 NI-----------------WSDKSRSTRFSNI-AKSLDSI--LIDTRKPVLLEDIDLLDF 121 + S++ + S + K+++ + +L++DI Sbjct: 190 HAVGNELLRRNPNAKVVYLHSERFVADMISALRNKTINEFKRFYRSVDALLIDDIQFFAG 249 Query: 122 ND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178 + + FH N++ + +++T FP L SR + P+ + Sbjct: 250 KEQSQEEFFHTFNALLENGQQIILTCDKFPKEVDGLEERLKSRFGWGLSQPMEPPELETR 309 Query: 179 EKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238 ++ K + ++ + A +I QR+ ++ E + ++ G I L E Sbjct: 310 VAILKKKAEEAKVDLPNDAAFFIAQRIRSNVRELEGALRRVIAHVRFTGAQIDIGLIKEA 369 Query: 239 LKET 242 LK+ Sbjct: 370 LKDL 373 >gi|225011346|ref|ZP_03701799.1| Chromosomal replication initiator DnaA [Flavobacteria bacterium MS024-3C] gi|225004508|gb|EEG42477.1| Chromosomal replication initiator DnaA [Flavobacteria bacterium MS024-3C] Length = 210 Score = 72.1 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 15/109 (13%), Positives = 44/109 (40%) Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 +HQ +++T+ PV L SR K ++ PD + ++ + Sbjct: 1 MHQNGKQVILTSDKAPVDMQDIEQRLLSRFKWGLSAELQTPDFETRVSILKNKLYKDGVE 60 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + + + Y+ + ++ ++ E + + + + LA +++++ Sbjct: 61 MSEDIIDYVAKNIKTNVRELEGAIISLIAQSSFNKKEVNIDLAQQIVEK 109 >gi|121602078|ref|YP_989528.1| chromosomal replication initiation protein [Bartonella bacilliformis KC583] gi|120614255|gb|ABM44856.1| chromosomal replication initiator protein DnaA [Bartonella bacilliformis KC583] Length = 524 Score = 72.1 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 34/207 (16%), Positives = 64/207 (30%), Gaps = 32/207 (15%) Query: 29 FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVV-----ILVGPSGSGKSCLANI 83 F P + D + ++ A+ S + + G GK+ L Sbjct: 175 VFGSPLDSRYTFDSFVEGASNRVALAAARSVAEGHKSALRFNPLFIHASVGLGKTHLLQA 234 Query: 84 WSDKSRSTRFSNIAKSLDSILIDTRKPVLLED------------IDLLDFNDTQLF---- 127 + + S L + R + D IDLL +D Q Sbjct: 235 IAAAALKRLTSTRVIYLTAEYFMWRFATAIRDNDALSFKEQLRDIDLLIIDDMQFLQGRS 294 Query: 128 ------HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 H++N + +++ A P + SRL+ ++I PD + ++ Sbjct: 295 IQYEFCHLLNMLLDSAKQVVVAADRPPAELESLDLRVRSRLQGGVALEIEAPDYEMRLEM 354 Query: 182 IVKMFADRQ-----IFIDKKLAAYIVQ 203 + + Q I I + YI + Sbjct: 355 LRQRLKIAQQDDNTIAISDDILEYIAK 381 >gi|13474648|ref|NP_106217.1| chromosomal replication initiation protein [Mesorhizobium loti MAFF303099] gi|14025403|dbj|BAB52003.1| chromosomal replication initiator protein; DnaA [Mesorhizobium loti MAFF303099] Length = 514 Score = 72.1 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 39/228 (17%), Positives = 70/228 (30%), Gaps = 50/228 (21%) Query: 33 PRCLGISRDDLLVHSAIEQ--------------AVRLIDSWPSWPSRVVILVGPSGSGKS 78 P + + + AVR + L G GK+ Sbjct: 170 PLDPRYTFGSFIEGPSNRVAFAAAKAVAESQSSAVRF---------NPLFLHATVGLGKT 220 Query: 79 CLANIWSD-------KSRSTRFSNIAK--SLDSILIDTRKPVLLE---DIDLLDFNDTQL 126 L + KSR + + + D L E DIDLL +D Q Sbjct: 221 HLLQAIAAESLKQNPKSRVVYLTAEYFMWRFATAIRDNNALTLKEQLRDIDLLIIDDMQF 280 Query: 127 F----------HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 H+IN + +++ A P P + SRL +++S PD Sbjct: 281 LQGKSIQHEFCHLINMLLDSAKQVVVAADRPPSELESLEPRVRSRLNGGVALEMSAPDFA 340 Query: 177 FLEKVIVKMFA-----DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 ++ A D + I ++ ++ + + S E +++ Sbjct: 341 MRLGMLKLRLATARIDDASLDISDEILNHVARTVTGSGRELEGAFNQL 388 >gi|257783816|ref|YP_003179033.1| chromosomal replication initiator protein DnaA [Atopobium parvulum DSM 20469] gi|257472323|gb|ACV50442.1| chromosomal replication initiator protein DnaA [Atopobium parvulum DSM 20469] Length = 509 Score = 71.7 bits (175), Expect = 7e-11, Method: Composition-based stats. Identities = 39/247 (15%), Positives = 84/247 (34%), Gaps = 49/247 (19%) Query: 15 KQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVG 71 K++ P +E ++ D +V E A + + + + + + G Sbjct: 139 KRRKSNPLYEET------SFNSNLTFDRFVVGDENELAHQHALNVANDAKGKANPLFIYG 192 Query: 72 PSGSGKSCLANIWSDKSRSTRFSNIAKSLD----------SILIDTRKPVLLE------D 115 SG GK+ L + S + D ++ + E + Sbjct: 193 ASGLGKTHLLRAVQNYINSEDIERVCVYKDADAFVDDYVNAVRKNASGNAATELNNNYQN 252 Query: 116 IDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPVSWGVC----LPDLCS 160 ID+L +D Q F+I NS+ +++ A P G+ + S Sbjct: 253 IDVLIIDDVQKLAGKAGTINFFFNIFNSLIDRGKQIILAADRTPAQLGMGSDGFDDRITS 312 Query: 161 RLKAATVVKISLPDDDFLEKVIV----KMFADRQIFI-----DKKLAAYIVQRMERSLVF 211 R+ V+ I P + +I + F +R + ++++ Y+ + +S+ Sbjct: 313 RMSGGIVIGIESPSYEMKLNLIHVFCDRAFKERNSSLSVDDMPEEISRYMADKAGQSIRT 372 Query: 212 AEKLVDK 218 E ++ Sbjct: 373 LEGFCNR 379 >gi|38257742|sp|Q98BG9|DNAA_RHILO RecName: Full=Chromosomal replication initiator protein DnaA Length = 490 Score = 71.7 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 39/228 (17%), Positives = 70/228 (30%), Gaps = 50/228 (21%) Query: 33 PRCLGISRDDLLVHSAIEQ--------------AVRLIDSWPSWPSRVVILVGPSGSGKS 78 P + + + AVR + L G GK+ Sbjct: 146 PLDPRYTFGSFIEGPSNRVAFAAAKAVAESQSSAVRF---------NPLFLHATVGLGKT 196 Query: 79 CLANIWSD-------KSRSTRFSNIAK--SLDSILIDTRKPVLLE---DIDLLDFNDTQL 126 L + KSR + + + D L E DIDLL +D Q Sbjct: 197 HLLQAIAAESLKQNPKSRVVYLTAEYFMWRFATAIRDNNALTLKEQLRDIDLLIIDDMQF 256 Query: 127 F----------HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 H+IN + +++ A P P + SRL +++S PD Sbjct: 257 LQGKSIQHEFCHLINMLLDSAKQVVVAADRPPSELESLEPRVRSRLNGGVALEMSAPDFA 316 Query: 177 FLEKVIVKMFA-----DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 ++ A D + I ++ ++ + + S E +++ Sbjct: 317 MRLGMLKLRLATARIDDASLDISDEILNHVARTVTGSGRELEGAFNQL 364 >gi|16904933|gb|AAL30950.1| DNA polymerase initiator protein [Streptococcus pneumoniae] Length = 163 Score = 71.7 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 24/158 (15%), Positives = 50/158 (31%), Gaps = 24/158 (15%) Query: 69 LVGPSGSGKSCLANIWSDK-----SRSTRFSNIAKSLDSILID---------------TR 108 + G G GK+ L N ++ + A+S + +D + Sbjct: 1 IYGGPGLGKTHLLNAIGNEILKNIPNARVKYIPAESFINDFLDHLRLGEMEKFKKTYRSL 60 Query: 109 KPVLLEDIDLLDF----NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164 +L++DI L + F+ N++H +++T+ P L +R Sbjct: 61 DLLLIDDIQSLSGKKVATQEEFFNTFNALHDKRKQIVLTSDRSPKHLEGLEERLVTRFSW 120 Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 I+ PD + ++ Y+ Sbjct: 121 GLTQTITPPDFETRIAILQSKTEHLGYNFQSDTLEYLA 158 >gi|260461961|ref|ZP_05810206.1| chromosomal replication initiator protein DnaA [Mesorhizobium opportunistum WSM2075] gi|259032208|gb|EEW33474.1| chromosomal replication initiator protein DnaA [Mesorhizobium opportunistum WSM2075] Length = 490 Score = 71.7 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 39/228 (17%), Positives = 71/228 (31%), Gaps = 50/228 (21%) Query: 33 PRCLGISRDDLLVHSAIEQ--------------AVRLIDSWPSWPSRVVILVGPSGSGKS 78 P + + + AVR + L G GK+ Sbjct: 146 PLDPRYTFGSFIEGPSNRVAFAAAKAVAESQSSAVRF---------NPLFLHATVGLGKT 196 Query: 79 CLANIWSD-------KSRSTRFSNIAK--SLDSILIDTRKPVLLE---DIDLLDFNDTQL 126 L + KSR + + + D L E DIDLL +D Q Sbjct: 197 HLLQAIAAESLKQNPKSRVVYLTAEYFMWRFATAIRDNNALTLKEQLRDIDLLIIDDMQF 256 Query: 127 F----------HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 H+IN + +++ A P P + SRL +++S PD Sbjct: 257 LQGKSIQHEFCHLINMLLDSAKQVVVAADRPPSELESLEPRVRSRLNGGVALEMSAPDFA 316 Query: 177 FLEKVIVKMFA-----DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 ++ A D + I +++ ++ + + S E +++ Sbjct: 317 MRLGMLKLRLATARVDDASLDISEEILNHVARTVTGSGRELEGAFNQL 364 >gi|220904107|ref|YP_002479419.1| Chromosomal replication initiator DnaA [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868406|gb|ACL48741.1| Chromosomal replication initiator DnaA [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 482 Score = 71.3 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 41/256 (16%), Positives = 78/256 (30%), Gaps = 33/256 (12%) Query: 20 QPKNKEEQLFFSFPR--------CLGISRDDLLVHSAIEQAVRLID--SWPSWPSRVVIL 69 P Q P S D +V AV S R + + Sbjct: 119 APARAPRQASLPLPSVAVYRDTQNWRYSFADFVVGPTNNMAVAAAQDVSRSCGCVRTLFV 178 Query: 70 VGPSGSGKSCLAN-----IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE-------DID 117 SG GK+ LA I + + + A+ S + + +E ++D Sbjct: 179 NSSSGLGKTHLAQAVGRAISEEGTNARVGYLTAEEFASRFVTALRAQDIEGFKARFRELD 238 Query: 118 LLDFNDTQLFH-----------IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 +L D F ++ S+ + T+ P L S + Sbjct: 239 VLLMEDVHFFQGKEKMQDMALAVVKSLQAKGGRAIFTSSFSPRELQKVDSQLVSHFCSGI 298 Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 + + P D ++ + Q+ + + + + R+ + E ++ + A Sbjct: 299 LTDMGRPTKDMRCDILGRKARTFQVLLPESVCDLLASRLTGDVRQMESCLNSLIFKARLL 358 Query: 227 GMGITRSLAAEVLKET 242 G+ LA EVL + Sbjct: 359 NCGLNVDLAMEVLSQY 374 >gi|145641118|ref|ZP_01796699.1| DNA replication initiation factor [Haemophilus influenzae R3021] gi|145274279|gb|EDK14144.1| DNA replication initiation factor [Haemophilus influenzae 22.4-21] Length = 78 Score = 71.3 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 32/74 (43%) Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 + +++ D+ KV+ R + + A +++ R+ R + + +D +D +L Sbjct: 4 IYQLNSLTDEQKIKVLQLAAYQRGFQLSDETANFLITRLARDMHTLFEALDLLDKASLQA 63 Query: 227 GMGITRSLAAEVLK 240 +T E+L Sbjct: 64 QRNLTIPFVKEILN 77 >gi|416271|dbj|BAA03630.1| DnaA protein [Spiroplasma citri] Length = 265 Score = 71.3 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 33/192 (17%), Positives = 67/192 (34%), Gaps = 31/192 (16%) Query: 73 SGSGKSCLANIWSDKSR--------------------STRFSNIAKSLDSIL---IDTRK 109 SG GK+ L + +K + N + D Sbjct: 2 SGLGKTHLLHAIENKVNEIYKTNNRVKYLKADEFGKIAMDILNQGHEIIEAFKTSYDIYD 61 Query: 110 PVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 +L++DI LL + FHI NS + + +++T+ +P G + SR Sbjct: 62 CLLIDDIQLLAKRNKTNELFFHIFNSYIEKNKQIVITSDKYPDDLGGFEARIISRFSYGL 121 Query: 167 VVKISLPD-DDFLEKVIVKMFADRQIFI-DKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 + + PD + L+ + K+ + + ++ +I + E + ++ LA+ Sbjct: 122 SIGLDSPDFETALKILEQKLKHQNNLGLFSEESLEFIALNFNSDVRKLEGAIKRLLFLAV 181 Query: 225 SRGMG---ITRS 233 IT + Sbjct: 182 MNKKPNEIITLA 193 >gi|319407986|emb|CBI81640.1| chromosomal replication initiator protein DnaA [Bartonella schoenbuchensis R1] Length = 524 Score = 70.6 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 35/219 (15%), Positives = 71/219 (32%), Gaps = 32/219 (14%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVV-----ILVGPSGSGKSCLANIWSDK 87 P + ++ + ++ A+ S + + G GK+ L + Sbjct: 179 PLDSRYTFENFVEGASNRVALAAARSIAEGHKSALRFNPLFIHASVGLGKTHLLQAIAAA 238 Query: 88 SRSTRFSNIAKSLDSILIDTRKPVLLED------------IDLLDFNDTQLF-------- 127 + L + R + D IDLL +D Q Sbjct: 239 ALKRLTPARVIYLTAEYFMWRFATAIRDNNALSFKEQLRDIDLLIIDDMQFLQGKSIQHE 298 Query: 128 --HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD-DDFLEKVIVK 184 H++N + +++ A P + SRL+ ++I PD + L+ + + Sbjct: 299 FCHLLNMLLDSAKQVIVAADRPPAELESLDLRVRSRLQGGVALEIEAPDYEMRLKMLQQR 358 Query: 185 MFADRQ----IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 + RQ I I + YI + + S E +++ Sbjct: 359 LKVARQDDSAIEISNDILEYIAKTILGSGRDIEGAFNQL 397 >gi|49474936|ref|YP_032977.1| chromosomal replication initiation protein [Bartonella henselae str. Houston-1] gi|49237741|emb|CAF26933.1| Chromosomal replication initiator protein D [Bartonella henselae str. Houston-1] Length = 523 Score = 70.6 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 34/219 (15%), Positives = 69/219 (31%), Gaps = 32/219 (14%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVV-----ILVGPSGSGKSCLANIWSDK 87 P + + + S+ A+ S + + G GK+ L + Sbjct: 178 PLDSRYTFESFVEGSSNRVALAAARSIAEGHKSALRFNPLFIHASVGLGKTHLLQAIAAA 237 Query: 88 SRSTRFSNIAKSLDSILIDTRKPVLLED------------IDLLDFNDTQLF-------- 127 + L + R + D IDLL +D Q Sbjct: 238 ALKRLKPARVIYLTAEYFMWRFATAIRDNDALSFKEQLRDIDLLIIDDMQFLQGKSIQNE 297 Query: 128 --HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 H++N + +++ A P + SRL+ ++I PD + +++ + Sbjct: 298 FCHLLNMLLDSAKQVVVAADRPPSELESLDLRVRSRLQGGVALEIEAPDYEMRLEMLRQR 357 Query: 186 FADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 Q I I ++ YI + + S E +++ Sbjct: 358 LKVAQQDDNMIVISDEVLQYIAKTILGSGRDIEGAFNQL 396 >gi|61212585|sp|Q6G526|DNAA_BARHE RecName: Full=Chromosomal replication initiator protein DnaA Length = 494 Score = 70.6 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 34/219 (15%), Positives = 69/219 (31%), Gaps = 32/219 (14%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVV-----ILVGPSGSGKSCLANIWSDK 87 P + + + S+ A+ S + + G GK+ L + Sbjct: 149 PLDSRYTFESFVEGSSNRVALAAARSIAEGHKSALRFNPLFIHASVGLGKTHLLQAIAAA 208 Query: 88 SRSTRFSNIAKSLDSILIDTRKPVLLED------------IDLLDFNDTQLF-------- 127 + L + R + D IDLL +D Q Sbjct: 209 ALKRLKPARVIYLTAEYFMWRFATAIRDNDALSFKEQLRDIDLLIIDDMQFLQGKSIQNE 268 Query: 128 --HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 H++N + +++ A P + SRL+ ++I PD + +++ + Sbjct: 269 FCHLLNMLLDSAKQVVVAADRPPSELESLDLRVRSRLQGGVALEIEAPDYEMRLEMLRQR 328 Query: 186 FADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 Q I I ++ YI + + S E +++ Sbjct: 329 LKVAQQDDNMIVISDEVLQYIAKTILGSGRDIEGAFNQL 367 >gi|33321975|gb|AAQ06706.1|AF496049_1 chromosomal replication initiator protein [Lactobacillus delbrueckii subsp. lactis] Length = 148 Score = 70.2 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 42/109 (38%) Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193 + ++MT+ P L SR V+I+ PD + ++ K + I Sbjct: 1 YNDQKQIVMTSDRLPTEIPDLSERLVSRFAWGLQVEITPPDLETRIAILRKKAESEGLEI 60 Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 D+ Y+ +++ ++ E + K+ A + I LA L + Sbjct: 61 DESTLDYVASQVDTNIRELEGALVKVQAQATIQKQDINIGLARSALADL 109 >gi|254429576|ref|ZP_05043283.1| chromosomal replication initiator protein DnaA [Alcanivorax sp. DG881] gi|196195745|gb|EDX90704.1| chromosomal replication initiator protein DnaA [Alcanivorax sp. DG881] Length = 474 Score = 70.2 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 34/244 (13%), Positives = 76/244 (31%), Gaps = 45/244 (18%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSG-------------KSCLA 81 G + + + A P+ G K+ L Sbjct: 139 NTGFTFSTFVEGKSNRMAAAAAQQVAENPASH---------GYNPLLLYGGVGLGKTHLM 189 Query: 82 NI-----------------WSDKSRSTRFSNI-AKSLDSI--LIDTRKPVLLEDIDLLDF 121 + S++ + S + K+++ + +L++DI Sbjct: 190 HAVGNELLRRNPNAKVVYLHSERFVADMISALRNKTINEFKRFYRSVDALLIDDIQFFAC 249 Query: 122 ND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178 + + FH N++ + +++T FP L SR + P+ + Sbjct: 250 KEQSQEEFFHTFNALLENGQQIILTCDKFPKEVDGLEERLKSRFGWGLSQPMEPPELETR 309 Query: 179 EKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238 ++ K + ++ + A +I QR+ ++ E + ++ G I L E Sbjct: 310 VAILKKKAEEAKVDLPNDAAFFIAQRIRSNVRELEGALRRVIAHVRFTGAQIDIGLIKEA 369 Query: 239 LKET 242 LK+ Sbjct: 370 LKDL 373 >gi|87251938|dbj|BAE79507.1| DnaA [Sphingobium japonicum] Length = 263 Score = 70.2 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 28/197 (14%), Positives = 62/197 (31%), Gaps = 24/197 (12%) Query: 74 GSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILIDTRKPVLL 113 G GK+ L + + S S + + + + +L+ Sbjct: 1 GLGKTHLLHAIARLFSSHSPSAPVLYMSAERFMMEFVNAMRANETMMFKARLRAARLLLI 60 Query: 114 EDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 +DI + + H IN + + +++TA P + SRL V I Sbjct: 61 DDIQFIAGKGSTQEEFLHTINDLIDSGARIVVTADRAPQMLDAIDARILSRLAGGLVADI 120 Query: 171 SLPDDDFLEKVIVKMFADRQ-IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229 D ++ A + + ++ + + ++ E +K+ G Sbjct: 121 RPAGLDLRLAILEAKRAIAGDPPVPDAVVDFLARSIRSNVRELEGAFNKLIAYGQLTGRS 180 Query: 230 ITRSLAAEVLKETQQCD 246 I A +L + + + Sbjct: 181 IDLEFAQAMLADAVRAN 197 >gi|332968623|gb|EGK07677.1| DNA-directed DNA replication initiator protein DnaA [Kingella kingae ATCC 23330] Length = 599 Score = 70.2 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 79/235 (33%), Gaps = 28/235 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVI----LVGPSGSGKSCLANIWSDK--- 87 + D L+ + A ++ S P + + G +G GK+ L ++ Sbjct: 263 SPDYTFDTLVEGKGNQLAAQVAKSIAEKPGDSMYNPFFVYGATGLGKTHLVQAIGNQLIR 322 Query: 88 ----------SRSTRFSNIAKSLDSILIDT-------RKPVLLEDIDLLDFNDTQLFHII 130 ++ + DT ++++DI + D + Sbjct: 323 LNPKARVRYMHSDEYIKTFMATVRNKTWDTFKQQYLHYNLLIIDDIQFIAGKDRTMEEFF 382 Query: 131 NSIH---QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 D +++T P S L SR +++ P+ + ++ + Sbjct: 383 FLFEHFHNRDQQIILTCDQLPSSLENMDKRLVSRFSWGMTIRLEPPELEMRINILERKAQ 442 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDK-MDNLALSRGMGITRSLAAEVLKE 241 I +++ A +I Q ++ S+ E +++ + + I LA + L++ Sbjct: 443 AMNISLEENAALFIAQNVKASVRDLEGALNRVIARCRFEKRNVIDIDLATDTLRD 497 >gi|887655|emb|CAA82286.1| dnaA [Wolbachia sp.] Length = 186 Score = 69.8 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 50/115 (43%), Gaps = 1/115 (0%) Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + FH N++ + L+++A P + SRL V I+ + ++ Sbjct: 1 EFFHTFNALIDQNKQLVISADRSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQA 60 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 +++ K + ++ + ++ ++ E ++K+ + +L G +T A+E L Sbjct: 61 KVEQMNMYVPKDVLEFLARNIKSNIRELEGALNKVTHTSLI-GRSMTVESASETL 114 >gi|257062755|ref|YP_003142427.1| chromosomal replication initiator protein DnaA [Slackia heliotrinireducens DSM 20476] gi|256790408|gb|ACV21078.1| chromosomal replication initiator protein DnaA [Slackia heliotrinireducens DSM 20476] Length = 501 Score = 69.8 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 36/252 (14%), Positives = 80/252 (31%), Gaps = 51/252 (20%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLANIWSDKSRS 90 ++ + + ++ A L + P + + G SG GK+ L + Sbjct: 152 ASSLTFESFVTGNSNMLAYSLAVAVAEAPGQPNTNPLFIYGKSGLGKTHLLRAIQN---- 207 Query: 91 TRFSNIAKSLDSILIDTRKPVL----------------------LEDIDLLDFNDTQ--- 125 ++D + ID+ + + D D+L +D Q Sbjct: 208 -YVMETNPTMDVVYIDSSEFLAEYTSAVTAHERDRKSFQNFQNRFLDADMLLIDDVQFFQ 266 Query: 126 --------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 +F + N + ++++A P + SR V + P+ + Sbjct: 267 GKSATLDIVFQLFNHLVDAGKQVVLSADRAPKMIDID-ERYKSRFNQGATVNVDPPELEV 325 Query: 178 LEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVDK-MDNLALSRGMG 229 +I + + + I + YI + ++ + V K + + S Sbjct: 326 KLGIIKNFINEYEATSESGPLNIPDDIQIYIAEISSSNVRELKSAVTKVIFQIRYSDSGE 385 Query: 230 ITRSLAAEVLKE 241 IT S +L++ Sbjct: 386 ITLSEVKTLLED 397 >gi|221195289|ref|ZP_03568345.1| chromosomal replication initiator protein DnaA [Atopobium rimae ATCC 49626] gi|221185192|gb|EEE17583.1| chromosomal replication initiator protein DnaA [Atopobium rimae ATCC 49626] Length = 531 Score = 69.8 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 43/247 (17%), Positives = 83/247 (33%), Gaps = 50/247 (20%) Query: 35 CLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSD----- 86 ++ D +V E A + + + + G SG GK+ L + Sbjct: 171 TSKLTFDRFVVGEENEFAFEQALRVANDEKGKGNPLFIYGSSGLGKTHLLRSIQNYIIEN 230 Query: 87 -------KSRSTRFSNIAKSLDSILIDTRKPVLLE---DIDLLDFNDTQ----------- 125 +T F + D +L E DID+L +D Q Sbjct: 231 DPSRLCVYKNATSFIDDYTRAMRNKADGAPQILTEAYQDIDVLIIDDVQKLAGKAGTLSF 290 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVC----LPDLCSRLKAATVVKISLPDDDFLEKV 181 F NS+ +++ A P G+ + +R+ + V+ I P + ++ Sbjct: 291 FFDTFNSLKTDGKQIVLAADRTPSDLGLGAEGFDERITTRVSSGIVIGIEQPSYE-MKVN 349 Query: 182 IVKMFADR-------------QIFIDKKLAAYIVQRMERSLVFAEKLVDKM---DNLALS 225 ++ F +R Q + ++ Y+ +R +S+ E ++ A Sbjct: 350 LINTFCERIHNEAVTEGLTYLQGTLSEETIQYMAERSGQSIRVIEGFCNRCVGEQTRAEE 409 Query: 226 RGMGITR 232 +G ITR Sbjct: 410 KGKSITR 416 >gi|218885110|ref|YP_002434431.1| chromosomal replication initiator protein DnaA [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|226735802|sp|B8DN19|DNAA_DESVM RecName: Full=Chromosomal replication initiator protein DnaA gi|218756064|gb|ACL06963.1| chromosomal replication initiator protein DnaA [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 498 Score = 69.8 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 36/252 (14%), Positives = 77/252 (30%), Gaps = 34/252 (13%) Query: 28 LFFSFPRCLG-----ISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSC 79 L P S D +V E A I + + GP G GK+ Sbjct: 146 LPLDMPAPNRALNWRFSFDSFVVGPNNELAFAASRGICRETLSADTLFLSSGP-GLGKTH 204 Query: 80 LANIW-------------------SDKSRSTRFSNIAKSLDSILIDTRKPV---LLEDID 117 L +++ + + + + V LLED+ Sbjct: 205 LMQAVGRALCEASNRAAPRVEYLTAEEFATRLIAALKAREVDRFKARYRDVDVLLLEDVH 264 Query: 118 LLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 L + ++ + ++ S +++++ L SR + + I P Sbjct: 265 FLQGKERMQDEVLATVKALKSRGSRVVLSSSFAARDLKNLDTQLVSRFCSGFLAHIDKPG 324 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234 + +++ + Q+ + + + R+ + E + + A I+ + Sbjct: 325 FETRRRILCEKARLHQVMLPDNVTDLLADRIRTDVRQIESCLHNLVLKAKLLNRQISMEM 384 Query: 235 AAEVLKETQQCD 246 A EVL Q + Sbjct: 385 AWEVLGHYAQQE 396 >gi|114799907|ref|YP_759293.1| chromosomal replication initiator protein DnaA [Hyphomonas neptunium ATCC 15444] gi|114740081|gb|ABI78206.1| chromosomal replication initiator protein DnaA [Hyphomonas neptunium ATCC 15444] Length = 457 Score = 69.8 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 71/177 (40%), Gaps = 26/177 (14%) Query: 36 LGISRDDLLVHSAIEQAVRLIDSWPSW-PSRVV--ILVGPSGSGKSCLANI----WSDKS 88 ++ D L+ + E AV L + P+ ++ GP G+GK+ L + + Sbjct: 113 PAMTFDTLVTGPSNEIAVTLAKRIAAGLPAGTATTLIYGPPGTGKTHLMQALRLEAARRD 172 Query: 89 RSTRFSNI-AKSLDSILIDTRKP---------------VLLEDIDLLD---FNDTQLFHI 129 + R + A+ S +D K +L++D+ + +T+L+ Sbjct: 173 TARRIVYLTAEEFMSAYLDGVKARDTSDLKKRLRAASILLIDDLHRIAGKPGTETELYQN 232 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 I + +++ + P + S +K AT V++ LPD ++++++ Sbjct: 233 IREVTSNGGQVVLVGDSAPGDASGFGQRMRSEIKGATAVEVELPDAGMRREILIRLA 289 >gi|61212967|sp|Q6MEG8|DNAA2_PARUW RecName: Full=Chromosomal replication initiator protein DnaA 2 Length = 448 Score = 69.8 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 36/266 (13%), Positives = 90/266 (33%), Gaps = 37/266 (13%) Query: 11 FVPDKQKNDQPKNKEEQLF-FSFPRCLGISRDDLLVHSAIEQ---AVRLIDSWPSWPSRV 66 +P + KEEQ ++ + + A + P Sbjct: 89 IIPPNHFSISSSQKEEQSPNSDVKLNNNYRFENFIEGPTNQFVKSAAMGVALRPGQSYNP 148 Query: 67 VILVGPSGSGKSCLANIWSD-------------KSRSTRFSNIAKSLDSILID------- 106 + + G G GK+ + + + +++ SL + +D Sbjct: 149 LFIHGGVGLGKTHILHSIGHYIKENHKKLRVQCITTEAFINDLVDSLRNKSVDRMKKFYR 208 Query: 107 -TRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR- 161 +L++DI L + +L + ++ + +++T+ P L R Sbjct: 209 SEIDVLLVDDIQFLQNRLNFEEELSYTFEALKNKGAQIVITSDKPPSLLK-----LSERT 263 Query: 162 ---LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218 ++ V + +P+ + ++ + + I K+A +I + + ++ E +++ Sbjct: 264 IGKMEGGLVAHMGIPELETRVAILQYKAEQKGLHIPHKVAFFIAEHIHNNVRQLEGAINR 323 Query: 219 MDNLALSRGMGITRSLAAEVLKETQQ 244 + + IT L + L+E Q Sbjct: 324 LSAHCRLLDLNITEELVSRTLREMLQ 349 >gi|46445941|ref|YP_007306.1| chromosomal replication initiation protein [Candidatus Protochlamydia amoebophila UWE25] gi|46399582|emb|CAF23031.1| putative replication initiation protein dnaA [Candidatus Protochlamydia amoebophila UWE25] Length = 461 Score = 69.8 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 36/266 (13%), Positives = 90/266 (33%), Gaps = 37/266 (13%) Query: 11 FVPDKQKNDQPKNKEEQLF-FSFPRCLGISRDDLLVHSAIEQ---AVRLIDSWPSWPSRV 66 +P + KEEQ ++ + + A + P Sbjct: 102 IIPPNHFSISSSQKEEQSPNSDVKLNNNYRFENFIEGPTNQFVKSAAMGVALRPGQSYNP 161 Query: 67 VILVGPSGSGKSCLANIWSD-------------KSRSTRFSNIAKSLDSILID------- 106 + + G G GK+ + + + +++ SL + +D Sbjct: 162 LFIHGGVGLGKTHILHSIGHYIKENHKKLRVQCITTEAFINDLVDSLRNKSVDRMKKFYR 221 Query: 107 -TRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR- 161 +L++DI L + +L + ++ + +++T+ P L R Sbjct: 222 SEIDVLLVDDIQFLQNRLNFEEELSYTFEALKNKGAQIVITSDKPPSLLK-----LSERT 276 Query: 162 ---LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218 ++ V + +P+ + ++ + + I K+A +I + + ++ E +++ Sbjct: 277 IGKMEGGLVAHMGIPELETRVAILQYKAEQKGLHIPHKVAFFIAEHIHNNVRQLEGAINR 336 Query: 219 MDNLALSRGMGITRSLAAEVLKETQQ 244 + + IT L + L+E Q Sbjct: 337 LSAHCRLLDLNITEELVSRTLREMLQ 362 >gi|302341445|ref|YP_003805974.1| chromosomal replication initiator protein DnaA [Desulfarculus baarsii DSM 2075] gi|301638058|gb|ADK83380.1| chromosomal replication initiator protein DnaA [Desulfarculus baarsii DSM 2075] Length = 442 Score = 69.0 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 38/247 (15%), Positives = 77/247 (31%), Gaps = 33/247 (13%) Query: 25 EEQLFFS---FPRCLGISR---DDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGS 75 QL SR ++ + E A + + S + LV +G Sbjct: 92 ARQLTLPSLGLDHPQLNSRYRFENYIAGGGNEYACAAAKAMANGQSFFGGALYLVSGTGL 151 Query: 76 GKSCLANI---------------------WSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 GKS L ++++ S + + +LLE Sbjct: 152 GKSHLTQAIGHHVLDGERPCRVSYLTAEDFANQMISALRAKRMEQFKDRFRRGCDVLLLE 211 Query: 115 DIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 ++ L D +L + ++++ ++ T P L SRL + V I Sbjct: 212 EVPFLAGKDKTQEELVYTLDALANAGKRIIFTGNQPPAQIKNLGRRLRSRLDGSVTVPIE 271 Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231 PD +++ + + + + + + ++ M + G + Sbjct: 272 PPDHQTRVRILRSEAQRLGVVSPVEPLELLAEAISGDVRRLISALNGMAARSALTGRPMD 331 Query: 232 RSLAAEV 238 +LAAEV Sbjct: 332 LALAAEV 338 >gi|297565027|ref|YP_003683999.1| AAA ATPase [Meiothermus silvanus DSM 9946] gi|296849476|gb|ADH62491.1| AAA ATPase [Meiothermus silvanus DSM 9946] Length = 254 Score = 69.0 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 68/178 (38%), Gaps = 23/178 (12%) Query: 16 QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGS 75 +++ P+ E L FPR + VH A+ + + ++ L GP G Sbjct: 77 RRHTAPRLLERDL-EGFPRYRAYLEKPVEVHGGNRTAIGAVQGYQ---GGLLYLWGPPGV 132 Query: 76 GKSCLA-NIWSDKSRSTRFSNIAKSLD-----------SILIDTRKPVLLEDID---LLD 120 GK+ LA + ++ RF LD ++ + + ++++D+ Sbjct: 133 GKTHLALRLAYRLAQEGRFVRFKSELDFLAEERLAAVGEAVLPSYERLVIDDVGKSRPTP 192 Query: 121 FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL----CSRLKAATVVKISLPD 174 F +L+ + L++TA P ++ L DL SR+ V + PD Sbjct: 193 FTLERLYALFEGGSTGRYDLILTANLPPEAYARRLGDLGEAVLSRIMGGLVASVEGPD 250 >gi|209547613|ref|YP_002279530.1| chromosomal replication initiation protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533369|gb|ACI53304.1| chromosomal replication initiator protein DnaA [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 516 Score = 69.0 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 39/207 (18%), Positives = 75/207 (36%), Gaps = 28/207 (13%) Query: 33 PRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRV--VILVGPSGSGKSCLANIWSDK 87 P + D + S+ A+ I S R + + G GK+ L ++ Sbjct: 174 PLDSRFTFDTFVEGSSNRVALAAAKTIAEAGSGAVRFNPLFIHSTVGLGKTHLLQAIANA 233 Query: 88 S----RSTRFSNIAKS----LDSILIDTRKPVLLED----IDLLDFNDTQLF-------- 127 + R+ R + + I + L+D IDLL +D Q Sbjct: 234 AVQNPRALRVVYLTAEYFMWRFATAIRDNDALTLKDSLRNIDLLIIDDMQFLQGKMIQHE 293 Query: 128 --HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD-DDFLEKVIVK 184 H++N + +++ A P P + SRL+ ++ PD + LE + + Sbjct: 294 FCHLLNMLLDSAKQVVVAADRAPWELESLDPRVRSRLQGGVAIEFDAPDYEMRLEILRRR 353 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVF 211 + A R + A ++Q + R++ Sbjct: 354 LAAARLEDPSLDIPAELLQHVARNVTA 380 >gi|49473788|ref|YP_031830.1| chromosomal replication initiation protein [Bartonella quintana str. Toulouse] gi|49239291|emb|CAF25617.1| Chromosomal replication initiator protein D [Bartonella quintana str. Toulouse] Length = 523 Score = 69.0 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 33/207 (15%), Positives = 65/207 (31%), Gaps = 32/207 (15%) Query: 29 FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVV-----ILVGPSGSGKSCLANI 83 F P + + + S+ A+ S + + G GK+ L Sbjct: 174 VFGSPLDSRYTFESFVEGSSNRVALAAARSIAEGHKSALRFNPLFIHASVGLGKTHLLQA 233 Query: 84 WSDKSRSTRFSNIAKSLDSILIDTRKPVLLED------------IDLLDFNDTQLF---- 127 + + L + R + D IDLL +D Q Sbjct: 234 VAAAALKRLMPARVIYLTAEYFMWRFATAIRDNAALSFKEQLRDIDLLIIDDMQFLQGKS 293 Query: 128 ------HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 H++N + +++ A P + SRL+ ++I +PD + K+ Sbjct: 294 IQNEFCHLLNMLLDSAKQVVVAADRPPAELESLDLRVRSRLQGGVALEIEVPDYEMRLKM 353 Query: 182 IVKMFA-----DRQIFIDKKLAAYIVQ 203 + + D + I ++ YI + Sbjct: 354 LRQRLKVVQQDDNMVVISDEVLQYIAK 380 >gi|119505644|ref|ZP_01627715.1| DNA replication initiation factor [marine gamma proteobacterium HTCC2080] gi|119458587|gb|EAW39691.1| DNA replication initiation factor [marine gamma proteobacterium HTCC2080] Length = 139 Score = 69.0 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 53/136 (38%), Gaps = 10/136 (7%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 +QL P ++ ++ + Q + +D+ + + L GP+G+GKS L S Sbjct: 3 DQLPLKIPLDNDLNLNNFQPRRDLLQLLTGVDALLGGADQSLFLWGPTGTGKSHLLQGIS 62 Query: 86 DKSRSTRF----SNIAKSLDSILID---TRKPVLLEDIDLLDFND---TQLFHIINSIHQ 135 + + + + ++D T + VL++DI L+ + LFH N + Sbjct: 63 RTIGARALYLPMTELLQYSPEAVLDGVVTSEAVLVDDIQLIVGREDWQEALFHSFNRLKA 122 Query: 136 YDSSLLMTARTFPVSW 151 + + P Sbjct: 123 AGIPQVYSGLAPPAQM 138 >gi|320527128|ref|ZP_08028315.1| replication initiator protein DnaA [Solobacterium moorei F0204] gi|320132456|gb|EFW24999.1| replication initiator protein DnaA [Solobacterium moorei F0204] Length = 457 Score = 69.0 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 34/223 (15%), Positives = 77/223 (34%), Gaps = 29/223 (13%) Query: 32 FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWS--- 85 P + D+ +V ++ + P + + + G SG GK+ L + Sbjct: 113 LPIQKDRNFDNFVVGDCNRESHAAALACAMSPGKFFNPLFIYGNSGLGKTHLLMSIANYV 172 Query: 86 ---DKSRSTRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDFND---TQ 125 + ++ ++ K +++++ R +L++DI L + Sbjct: 173 LKENPTKKVYYTESLKFVETVVNAIRNNKIDEFKQYMYSVDLLLVDDIQFLAGKEKSHEV 232 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD-DDFLEKVIVK 184 F I N + + + + P L SR + V I P+ + L + +K Sbjct: 233 FFTIYNELVNNRKQICIASDRLPKEIKGLEDRLISRFSSGLSVGIDSPESETSLAILQMK 292 Query: 185 -MFADRQIF-IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 + I +D+ YI ++ E +++ A+ Sbjct: 293 IKTSSYSIEDVDQDGLNYIASNFSGNVRDLEGAWNRVLFYAIQ 335 >gi|238021640|ref|ZP_04602066.1| hypothetical protein GCWU000324_01542 [Kingella oralis ATCC 51147] gi|237866254|gb|EEP67296.1| hypothetical protein GCWU000324_01542 [Kingella oralis ATCC 51147] Length = 519 Score = 69.0 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 80/235 (34%), Gaps = 28/235 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVI----LVGPSGSGKSCLANIWSDK--- 87 + + L+ + A + S P + + G +G GK+ L ++ Sbjct: 183 SPDYTFETLVEGKGNQLAANVAKSIAEKPGDSMYNPFFVYGSTGLGKTHLVQAIGNELLR 242 Query: 88 ----------SRSTRFSNIAKSLDSILIDT-------RKPVLLEDIDLLDFNDTQLFHII 130 ++ + DT ++++DI + D + Sbjct: 243 LNPKAKVRYMHSDEYLKTFMATVRNKTWDTFKQQYLHYNLLIIDDIQFISGKDRTMEEFF 302 Query: 131 NSIH---QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 D +++T P S L SR +++ P+ + ++ + Sbjct: 303 FLFEHFHSRDQQIILTCDQLPSSLEDMDKRLVSRFSWGMTIRLEPPELEMRVDILERKAQ 362 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDK-MDNLALSRGMGITRSLAAEVLKE 241 I +++ A +I Q +++++ E +++ + S+ I LA + L++ Sbjct: 363 AAGIMLEEDAATFIAQNVKQNVRELEGALNRVIARCRFSKASTIDIDLATDALQD 417 >gi|168702517|ref|ZP_02734794.1| chromosomal replication initiator protein DnaA [Gemmata obscuriglobus UQM 2246] Length = 347 Score = 69.0 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 81/227 (35%), Gaps = 26/227 (11%) Query: 43 LLVHSAIEQAVRLIDS------WPSWPS-RVVILVGPSGSGKSCLANIWSDKSRSTRFSN 95 LV AVR + S P V+L GP G+GKS L+ + +T Sbjct: 27 FLVLPENRVAVRALRSVCRSVLTRRRPGANPVVLHGPPGTGKSRLSASLVQQLANTSDGV 86 Query: 96 IAKSLDSILIDTRKPVLLED-----IDLLDFNDTQLFHIINSIHQYDSSLL--------- 141 A+ + + + L+D DLL D Q H+ + + LL Sbjct: 87 SAQVVSAGDVSRAPDEGLDDDVFVSCDLLALEDVQ--HLSTRAAEDATELLDRRTARRRA 144 Query: 142 --MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199 +TA P L SRL + VV++ ++ + RQ+ + Sbjct: 145 TVVTASAGPAQLAHLPQRLTSRLSSGLVVRLEPLSAPSRLAILAEAARQRQVRLTPDALE 204 Query: 200 YIVQRME-RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 ++ + + L+ + +A + +TR+ + L ++ Q Sbjct: 205 WLASQTTGGGVRTTLGLLQNLAQVAAAFPGALTRADVQQALADSGQP 251 >gi|283768635|ref|ZP_06341547.1| chromosomal replication initiator protein DnaA [Bulleidia extructa W1219] gi|283105027|gb|EFC06399.1| chromosomal replication initiator protein DnaA [Bulleidia extructa W1219] Length = 453 Score = 68.6 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 29/214 (13%), Positives = 66/214 (30%), Gaps = 30/214 (14%) Query: 40 RDDLLVHSAI----EQAVRL-IDSWPSWPSRVVILVGPSGSGKSCLANIWSD-------- 86 ++ ++ A + ++ W + + G SG GK+ L ++ Sbjct: 120 FENFVIGDCNRESQAAAYAVSLNPGQLW--NPLFIYGNSGLGKTHLLMAIANYIKKHQPE 177 Query: 87 ---------KSRSTRFSNIAKSLDSILID---TRKPVLLEDIDLLDFNDTQ---LFHIIN 131 K T + + +L++DI + + F I Sbjct: 178 KKVYYTESTKFVETVVHALQTGTIDAFKRYMYSLDVLLIDDIQFIAGKEKSHEIFFTIYE 237 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 + + +T+ P L SR V I P+ + ++ + Sbjct: 238 EMVNNRKQVCITSDREPKDIKDLEDRLASRFLNGLTVGIDSPEFETARAILNQKIKVNDN 297 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 ID++ YI ++ E ++++ A+ Sbjct: 298 SIDEEGMNYIASNFAGNVRELEGALNRVLFYAIQ 331 >gi|61212583|sp|Q6G0V6|DNAA_BARQU RecName: Full=Chromosomal replication initiator protein DnaA Length = 494 Score = 68.6 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 33/207 (15%), Positives = 65/207 (31%), Gaps = 32/207 (15%) Query: 29 FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVV-----ILVGPSGSGKSCLANI 83 F P + + + S+ A+ S + + G GK+ L Sbjct: 145 VFGSPLDSRYTFESFVEGSSNRVALAAARSIAEGHKSALRFNPLFIHASVGLGKTHLLQA 204 Query: 84 WSDKSRSTRFSNIAKSLDSILIDTRKPVLLED------------IDLLDFNDTQLF---- 127 + + L + R + D IDLL +D Q Sbjct: 205 VAAAALKRLMPARVIYLTAEYFMWRFATAIRDNAALSFKEQLRDIDLLIIDDMQFLQGKS 264 Query: 128 ------HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 H++N + +++ A P + SRL+ ++I +PD + K+ Sbjct: 265 IQNEFCHLLNMLLDSAKQVVVAADRPPAELESLDLRVRSRLQGGVALEIEVPDYEMRLKM 324 Query: 182 IVKMFA-----DRQIFIDKKLAAYIVQ 203 + + D + I ++ YI + Sbjct: 325 LRQRLKVVQQDDNMVVISDEVLQYIAK 351 >gi|254295380|ref|YP_003061403.1| chromosomal replication initiator protein DnaA [Hirschia baltica ATCC 49814] gi|254043911|gb|ACT60706.1| chromosomal replication initiator protein DnaA [Hirschia baltica ATCC 49814] Length = 500 Score = 67.9 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 39/260 (15%), Positives = 88/260 (33%), Gaps = 31/260 (11%) Query: 12 VPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVI 68 V +N + +K+E + F+ L + D L+V + + A + S P VV+ Sbjct: 131 VKASAENTKVADKKESVDFTQGVDLTQTFDTLVVGDSNQLAANIARKVASGIVGPVSVVL 190 Query: 69 LVGPSGSGKSCLANI----WSDKSRS----------------TRFSNIAKSLDSILIDTR 108 G G GK+ L + ++++ S I Sbjct: 191 FYGAHGVGKTHLLRAIEHDCAVQTKAKSAVYMSAEDFMLSFVEGVRQKDTSAQRNRIRNA 250 Query: 109 KPVLLEDIDLLDFNDTQL---FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 VLL+D+ L+ L F + ++ ++++A P + ++ Sbjct: 251 DIVLLDDLQLITSRAATLKEFFQHLRAVTSNGGKVVLSADAAPTRLECLDDRMRDDIQGG 310 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 VV++ P+ + ++I A + ++ + +R+ S V + Sbjct: 311 VVVEVHRPEIEMRAEIIRSKIAIIKEDFPEFSLEDAWIDMMAERLTASGRALYGAVRNVF 370 Query: 221 NLALSRGMGITRSLAAEVLK 240 + +T + ++ Sbjct: 371 AGTVLANKPVTEAAVENAIR 390 >gi|294788716|ref|ZP_06753957.1| DNA replication initiator protein, transcriptional regulator of replication and housekeeping genes [Simonsiella muelleri ATCC 29453] gi|294483198|gb|EFG30884.1| DNA replication initiator protein, transcriptional regulator of replication and housekeeping genes [Simonsiella muelleri ATCC 29453] Length = 546 Score = 67.5 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 36/257 (14%), Positives = 83/257 (32%), Gaps = 28/257 (10%) Query: 13 PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVI---- 68 P + + K EQ + D L+ A + S P + Sbjct: 188 PSAIEIAKAKEDAEQRHSQTNLSPEYTFDTLVEGKGNHLAAAVAKSIAEKPGDSMYNPFF 247 Query: 69 LVGPSGSGKSCLANIWSDK-------------SRSTRFSNIAKSLDSILIDT-------R 108 + G +G GK+ L ++ ++ + DT Sbjct: 248 VYGSTGLGKTHLVQAIGNELLKLNTKARVRYMHSDEYLKTFMATVRNKTWDTFKQQYLHY 307 Query: 109 KPVLLEDIDLLDFNDTQLFHIINSIH---QYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 ++++DI + D + + +++T P S L SR Sbjct: 308 NLLIIDDIQFIQGKDRTMEEFFFLFEHFHSRNQQIILTCDQLPSSLENMEKRLISRFSWG 367 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK-MDNLAL 224 +K+ P+ + ++ + I + + A +I Q +++++ E +++ + Sbjct: 368 MTIKLEPPELEMRVDILERKAEAVGITLLEDAALFIAQNVKQNVRELEGALNRVLARCRF 427 Query: 225 SRGMGITRSLAAEVLKE 241 + I LA + L++ Sbjct: 428 EKRTTIDIDLATDALQD 444 >gi|86169617|gb|ABC87048.1| chromosomal replication initiation protein [Weissella kandleri] Length = 220 Score = 67.1 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 65/166 (39%), Gaps = 16/166 (9%) Query: 84 WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSL 140 W+D R R + K+ ++ + +L++DI LL + + F+ N+I + + Sbjct: 13 WTDALRFNRTNEFKKAYRNVDL-----LLVDDIQLLADKENVQEEFFNTFNAITRDGHQI 67 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 ++T+ P L SR ++ PD + ++ + QI I + + Sbjct: 68 VLTSDKLPKDIKGIEDRLVSRFAMGYSANLTQPDPETKIAILKNKAEESQIEISYDVLSE 127 Query: 201 IVQRME---RSLVFAE-KLVDKMDNLALSRGMGITRSLAAEVLKET 242 I + R L K+V K+ +T E+LK+ Sbjct: 128 IANAVNTNVRDLEGVFKKVVAKIK----ISNSEVTVDAIREILKDL 169 >gi|304314451|ref|YP_003849598.1| replication factor C, large subunit [Methanothermobacter marburgensis str. Marburg] gi|302587910|gb|ADL58285.1| replication factor C, large subunit [Methanothermobacter marburgensis str. Marburg] Length = 470 Score = 67.1 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 33/212 (15%), Positives = 74/212 (34%), Gaps = 39/212 (18%) Query: 43 LLVHSAIEQAVRLIDSW-PSW----PSRVVILVGPSGSGKSCLANIWSDK-SRSTRFSNI 96 + ++A+ I W W P ++LVGP G+GK+ +A+I + S + + Sbjct: 12 FEEVAGNQKAIAEIKKWISGWKAGEPQPPLLLVGPPGTGKTTMAHIIGREFSDTLELNAS 71 Query: 97 AKSLDSILIDTRK--------------PVLLEDIDLLDFND-TQLFHIINSI-HQYDSSL 140 K ++ T ++L+++D + N+ IN I + + Sbjct: 72 DKRSQDAIMRTAGEASATRSLFNHDLKLIILDEVDGIHGNEDRGGVQAINRILRESRHPI 131 Query: 141 LMTARTFPVSWGVCLPDLCSRLKA----ATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196 ++TA RL++ V+ I + + ++ I Sbjct: 132 VLTANDPYSK----------RLQSIKPKCKVINIRKVHTSSIAAALKRICRAEGIDCPDD 181 Query: 197 LAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228 + + + RS ++ ++ +A Sbjct: 182 VLKELAK---RSHGDLRSAINDLEAVASGEER 210 >gi|254780627|ref|YP_003065040.1| chromosomal replication initiation protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040304|gb|ACT57100.1| chromosomal replication initiation protein [Candidatus Liberibacter asiaticus str. psy62] Length = 502 Score = 66.7 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 36/226 (15%), Positives = 73/226 (32%), Gaps = 35/226 (15%) Query: 29 FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS--------RVVILVGPSGSGKSCL 80 F P + S+ A+ S S + + G GK+ L Sbjct: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 Query: 81 ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLED------------IDLLDFNDTQLF- 127 ++ S + + L + R + D IDLL +D Q Sbjct: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 Query: 128 ---------HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178 H++NS+ ++ A P P + SRL+ V + L D + Sbjct: 273 GKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 Query: 179 EKVIVKMFADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 ++ A Q + I++++ ++ + + S + +++ Sbjct: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 >gi|164456444|dbj|BAF97725.1| replication initiation protein [Corynebacterium macginleyi] gi|164456462|dbj|BAF97734.1| replication initiation protein [Corynebacterium macginleyi] gi|164456468|dbj|BAF97737.1| replication initiation protein [Corynebacterium macginleyi] gi|164456472|dbj|BAF97739.1| replication initiation protein [Corynebacterium macginleyi] Length = 159 Score = 66.7 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 46/113 (40%) Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N++HQ + +++++ P L +R + + I PD + +++K A Sbjct: 2 FNALHQANKQIILSSDRPPKQLTTLEDRLRTRFEGGLITDIQPPDLETRIAILMKKAAAD 61 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +D+ + I R E S+ E + ++ + I +A L++ Sbjct: 62 GTEVDRSVLELIASRFESSIRELEGALIRVSAYSSLVNEPINVEMAEIALRDL 114 >gi|164456442|dbj|BAF97724.1| replication initiation protein [Corynebacterium macginleyi] gi|164456446|dbj|BAF97726.1| replication initiation protein [Corynebacterium macginleyi] gi|164456450|dbj|BAF97728.1| replication initiation protein [Corynebacterium macginleyi] gi|164456452|dbj|BAF97729.1| replication initiation protein [Corynebacterium macginleyi] gi|164456460|dbj|BAF97733.1| replication initiation protein [Corynebacterium macginleyi] gi|164456464|dbj|BAF97735.1| replication initiation protein [Corynebacterium macginleyi] Length = 159 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 46/113 (40%) Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N++HQ + +++++ P L +R + + I PD + +++K A Sbjct: 2 FNALHQANKQIILSSDRPPKQLTTLEDRLRTRFEGGLITDIQPPDLETRIAILMKKAAAD 61 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +D+ + I R E S+ E + ++ + I +A L++ Sbjct: 62 GTEVDRSVLELIASRFESSIRELEGALIRVSAYSSLVNEPINVEMAEIALRDL 114 >gi|269926921|ref|YP_003323544.1| IstB domain protein ATP-binding protein [Thermobaculum terrenum ATCC BAA-798] gi|269790581|gb|ACZ42722.1| IstB domain protein ATP-binding protein [Thermobaculum terrenum ATCC BAA-798] Length = 280 Score = 66.3 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 57/165 (34%), Gaps = 33/165 (20%) Query: 40 RDDL--LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW--------SDKSR 89 D+ VH + A + P ++L GP GSGK+ LA S Sbjct: 97 FDNFDPSVHPSAATAFEATKQYAENPHGWIMLCGPCGSGKTHLAAAIVNYSISVRQSNSL 156 Query: 90 STRFSNIAKSLDS--------------ILIDTRKPVLLEDI---DLLDFNDTQLFHIINS 132 ++ L ++I ++L+D+ + + +L+ +IN Sbjct: 157 FMIVPDLLDYLRETFNPKSDITYDERFLMIREVPLLVLDDLGTENATSWAREKLYQLINH 216 Query: 133 IHQYDSSLLMTARTFPVSWGVCLPDLCSRL---KAATVVKISLPD 174 + + ++T P + + SRL + + + PD Sbjct: 217 RYNSEMPTVITTNQPPEAIDDRI---RSRLSDTRLVMHIVLDAPD 258 >gi|86169611|gb|ABC87045.1| chromosomal replication initiation protein [Weissella confusa] Length = 233 Score = 66.3 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 27/161 (16%), Positives = 54/161 (33%), Gaps = 9/161 (5%) Query: 88 SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTA 144 + + R A + +L++DI L D + FH N+I + + +++T+ Sbjct: 26 TDALRRGANATEAFKQEYRSADLLLVDDIQFLADKDKIQEEFFHTFNAITRENHQIVLTS 85 Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 P L +R I+ PD ++ + I + I Sbjct: 86 DKLPKEIPGLEMRLVTRFAQGYSANITKPDLPTRVAILRNKAEQENLNIPNDVIDEIAAA 145 Query: 205 ME---RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 ++ R L V A + +T A ++L+ Sbjct: 146 VDTNVRDLEGVFNQVAGKLRFATA---PVTVETARDILETM 183 >gi|164456454|dbj|BAF97730.1| replication initiation protein [Corynebacterium accolens] Length = 159 Score = 65.9 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 46/113 (40%) Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N++HQ + +++++ P L +R + + I PD + +++K A Sbjct: 2 FNALHQANKQIILSSDRPPKQLTTLEDRLRTRFEGGLITDIQPPDLETRIAILMKKAAAD 61 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +D+ + I R E S+ E + ++ + I +A L++ Sbjct: 62 GTEVDRSVLELIASRFESSIRELEGALIRVSAYSSLVNEPINVEMAEIALRDL 114 >gi|320535593|ref|ZP_08035690.1| replication initiator protein DnaA [Treponema phagedenis F0421] gi|320147556|gb|EFW39075.1| replication initiator protein DnaA [Treponema phagedenis F0421] Length = 466 Score = 65.9 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 31/194 (15%), Positives = 67/194 (34%), Gaps = 30/194 (15%) Query: 77 KSCLANIWSDK----SRSTRFSNIAKSLDSILIDTRKP---------------VLLEDID 117 K+ L ++ + A+S + I +L++DI Sbjct: 167 KTHLMQAIGNEIYRTTDLNIIYVTAESFSNEFISALGSKKTQEFKNKYRKADVLLIDDIH 226 Query: 118 ---LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 D +LFH N++++ ++ T L SR V +++P Sbjct: 227 FFQNKDGLQEELFHTFNALYESGRQIVFTCDRPIKELKNFSERLKSRCTRGLNVDLTMPS 286 Query: 175 DDFLEKVIVKMFA-------DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 + +++K D+ I I ++ I Q + ++ E + K+ G Sbjct: 287 FETRCAILIKKLEIYNKSNPDKNIKISDEIIHLIAQNVFSNVRDLEGCLTKIIAFTEISG 346 Query: 228 MGITRSLAAEVLKE 241 +T + ++LK+ Sbjct: 347 -EVTIDIIPDLLKD 359 >gi|315121828|ref|YP_004062317.1| chromosomal replication initiation protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495230|gb|ADR51829.1| chromosomal replication initiation protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 507 Score = 65.6 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 34/222 (15%), Positives = 73/222 (32%), Gaps = 35/222 (15%) Query: 33 PRCLGISRDDLLVHSAIEQAV------RLIDSWPSWPSRV--VILVGPSGSGKSCLANIW 84 P + + A+ +DS R+ + + G GK+ L Sbjct: 162 PLDSRFVFSTFIDGPSNRVALTAAQNIAEVDSHGCTTVRLNPLFIHASVGLGKTHLLQSI 221 Query: 85 SDKSRSTRFSNIAKSLDSILIDTRKPVLLED------------IDLLDFNDTQLF----- 127 ++ + + + L + R + D IDLL +D Q Sbjct: 222 ANAAIKRQPNLRVVYLTAEYFMWRFASAIRDNHALNLKDSLRNIDLLLIDDMQFLQGKLI 281 Query: 128 -----HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 H++NS+ ++ A P P + SRL+ V + D D ++ Sbjct: 282 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVAVPLGSHDYDMRLSIL 341 Query: 183 VKMFADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 A Q + I++++ ++ + + S + +++ Sbjct: 342 KNRLAISQKENPTLNINEEVLTHVARTITTSGRELDGAFNQL 383 >gi|164456438|dbj|BAF97722.1| replication initiation protein [Corynebacterium macginleyi] gi|164456440|dbj|BAF97723.1| replication initiation protein [Corynebacterium macginleyi] gi|164456448|dbj|BAF97727.1| replication initiation protein [Corynebacterium macginleyi] gi|164456456|dbj|BAF97731.1| replication initiation protein [Corynebacterium macginleyi] gi|164456458|dbj|BAF97732.1| replication initiation protein [Corynebacterium macginleyi] gi|164456466|dbj|BAF97736.1| replication initiation protein [Corynebacterium macginleyi] gi|164456470|dbj|BAF97738.1| replication initiation protein [Corynebacterium macginleyi] Length = 159 Score = 65.6 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 46/113 (40%) Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 N++HQ + +++++ P L +R + + I PD + +++K A Sbjct: 2 FNALHQANKQIILSSDRPPKQLTTLEDRLRTRFEGGLITDIQPPDLETRIAILMKKAAAD 61 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +++ + I R E S+ E + ++ + I +A L++ Sbjct: 62 GTEVERSVLELIASRFESSIRELEGALIRVSAYSSLVNEPINVEMAEIALRDL 114 >gi|217976201|ref|YP_002360348.1| chromosomal replication initiation protein [Methylocella silvestris BL2] gi|217501577|gb|ACK48986.1| chromosomal replication initiator protein DnaA [Methylocella silvestris BL2] Length = 506 Score = 65.6 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 26/208 (12%), Positives = 70/208 (33%), Gaps = 25/208 (12%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------ 104 P + L G GK+ L + +++ I + + + Sbjct: 200 PYNPLYLHASVGLGKTHLLQAVAHMAQTMSRRVIYLTAERFMYGFVSALKAQTAIAFKEK 259 Query: 105 IDTRKPVLLEDIDLLDFN--DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 + ++++DI L + H +N++ +++ A P + SRL Sbjct: 260 LRGIDILVIDDIQFLQGKSIQQEFCHTLNALIDAHRQIVIAADRPPSELESLDERVRSRL 319 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVD 217 V+I D+ +++ A + + + A++ ++ + + V+ Sbjct: 320 AGGLCVEIGGLDEQLRVRILEGRIAAAKHAHPNFEVPSAVTAFVAHAIQTNGRDLDGAVN 379 Query: 218 KMDNLALSRGMGITRSLAAEVLKETQQC 245 ++ A G + A +++ + Sbjct: 380 RLLAHASLNGAPLEVETAELAIRDLVRA 407 >gi|13508425|ref|NP_110375.1| chromosomal replication initiation protein [Mycoplasma pneumoniae M129] gi|2494136|sp|Q59549|DNAA_MYCPN RecName: Full=Chromosomal replication initiator protein DnaA gi|1209520|gb|AAC43648.1| DnaA protein [Mycoplasma pneumoniae] gi|1673817|gb|AAB95804.1| chromosomal replication initiator protein DnaA [Mycoplasma pneumoniae M129] Length = 439 Score = 65.6 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 53/164 (32%), Gaps = 30/164 (18%) Query: 38 ISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWS--------- 85 + + +V + I + + G +G GK+ L Sbjct: 105 FTFKNFVVGDGNRRVYEAGVRISETQDADFSPLFIYGETGLGKTHLLQAIGNDKFFHFPN 164 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKP-------VLLEDIDLLDFNDTQ-----------LF 127 K + S+ A+ + + K E +DLL +DTQ LF Sbjct: 165 AKVKYVVSSDFAQEVVNAFYQKEKDQGIEKLKAAYESLDLLLIDDTQIFGKKEKTLEILF 224 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 I N++ ++ + P P + SR K+ ++KI Sbjct: 225 SIFNNLVSKGKQIVFVSDKTPDELANIDPRMVSRFKSGLLLKIE 268 >gi|331265608|ref|YP_004325238.1| chromosomal replication initiation protein [Streptococcus oralis Uo5] gi|326682280|emb|CBY99897.1| chromosomal replication initiation protein [Streptococcus oralis Uo5] Length = 167 Score = 65.2 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 22/161 (13%), Positives = 53/161 (32%), Gaps = 21/161 (13%) Query: 35 CLGISRDDLLVHSAIEQA----VRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS-- 88 ++ + A + ++ + + + G SGSGK+ L +K Sbjct: 8 DNKYQFENFIEKDGNALAKKEALEVVKNLGL-KYNPLYIYGQSGSGKTHLLQAIGNKVLE 66 Query: 89 ----------RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND----TQLFHIINSIH 134 + + + + ++++DI +L D + F++ NS H Sbjct: 67 NNPEKRVKYISAKDLLENELEIQKVRSEKFDLLIVDDIQILGEKDDMIQEKFFNLFNSQH 126 Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 + ++ + + P L R K ++ +D Sbjct: 127 DMNKQMVFSGDSEPDQLENLNFHLIVRFKWGMTACLTSLED 167 >gi|301633565|gb|ADK87119.1| chromosomal replication initiator protein DnaA [Mycoplasma pneumoniae FH] Length = 439 Score = 65.2 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 53/164 (32%), Gaps = 30/164 (18%) Query: 38 ISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWS--------- 85 + + +V + I + + G +G GK+ L Sbjct: 105 FTFKNFVVGDGNRRVYEAGVRISETQDADFSPLFIYGETGLGKTHLLQAIGNDKFFHFPN 164 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKP-------VLLEDIDLLDFNDTQ-----------LF 127 K + S+ A+ + + K E +DLL +DTQ LF Sbjct: 165 AKVKYVVSSDFAQEVVNAFYQKDKDQGIEKLKAAYESLDLLLIDDTQIFGKKEKTLEILF 224 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 I N++ ++ + P P + SR K+ ++KI Sbjct: 225 SIFNNLVSKGKQIVFVSDKTPDELANIDPRMVSRFKSGLLLKIE 268 >gi|544176|sp|P35907|DNAA_WOLSP RecName: Full=Chromosomal replication initiator protein DnaA gi|887654|emb|CAA82285.1| dnaA [Wolbachia sp.] Length = 186 Score = 64.8 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 49/115 (42%), Gaps = 1/115 (0%) Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + F N++ + L+++A P + SRL V I+ + ++ Sbjct: 1 EFFKTFNALIDQNKQLVISADRSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQA 60 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 +++ K + ++ + ++ ++ E ++K+ + +L G +T A+E L Sbjct: 61 KVEQMNMYVPKDVLEFLARNIKSNIRELEGALNKVTHTSLI-GRSMTVESASETL 114 >gi|150395230|ref|YP_001325697.1| chromosomal replication initiation protein [Sinorhizobium medicae WSM419] gi|150026745|gb|ABR58862.1| chromosomal replication initiator protein DnaA [Sinorhizobium medicae WSM419] Length = 481 Score = 64.8 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 36/233 (15%), Positives = 78/233 (33%), Gaps = 32/233 (13%) Query: 19 DQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRV--VILVGPS 73 P + F P D + S+ A+ I + R + + Sbjct: 125 AAPARPHQTPLFGSPLDQRYGFDSFVEGSSNRVALAAARTIAEAGAGAVRFNPLFIHSSV 184 Query: 74 GSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLED------------IDLLDF 121 G GK+ L + + + + L + R + D IDLL Sbjct: 185 GLGKTHLLQAIALAALQSARAPRVVYLTAEYFMWRFATAIRDNDALSLKESLRNIDLLII 244 Query: 122 NDTQLF----------HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +D Q H++N + +++ A P + SRL+ +++ Sbjct: 245 DDMQFLQGKSIQHEFCHLLNMLLDSAKQVVVAADRAPWELESLDSRVRSRLQGGVAIEME 304 Query: 172 LPDDDFLEKVIVKMF-ADRQ----IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 PD + +++ + A RQ + I ++ +++ + + S E +++ Sbjct: 305 GPDYEMRLEMLKRRLEAARQDDATLEIPLEILSHVARNVTASGRELEGAFNQL 357 >gi|331013866|gb|EGH93922.1| DNA replication initiation factor [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 80 Score = 64.4 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%) Query: 105 IDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158 ++ + V L+D+ + + LFH+ N + LL+ A P V LPDL Sbjct: 24 LEQYELVCLDDLQAIVGKPEWEEALFHLFNRLRDSGRRLLIAASKSPRELPVKLPDL 80 >gi|297521892|ref|ZP_06940278.1| DNA replication initiation factor [Escherichia coli OP50] Length = 151 Score = 64.4 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 19/135 (14%), Positives = 43/135 (31%), Gaps = 13/135 (9%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 N QL + L + S + L G+G+S L + Sbjct: 17 NTPAQLSLPLYLPDDETFASFWPGDNSSLLAALQNVLRQEHSGYIYLWAREGAGRSHLLH 76 Query: 83 IWSD----KSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFNDT---QLFHII 130 + + + + K + ++ V +++I+ + ++ +F + Sbjct: 77 AACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCIDNIECIAGDELWEMAIFDLY 136 Query: 131 NSIHQYDS-SLLMTA 144 N I + LL+T Sbjct: 137 NRILESGKTRLLITG 151 >gi|227820588|ref|YP_002824558.1| chromosomal replication initiation protein [Sinorhizobium fredii NGR234] gi|227339587|gb|ACP23805.1| chromosomal replication initiator protein DnaA [Sinorhizobium fredii NGR234] Length = 480 Score = 64.0 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 38/217 (17%), Positives = 72/217 (33%), Gaps = 29/217 (13%) Query: 24 KEEQLF-FSFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRV--VILVGPSGSGK 77 K Q F P + + + S+ A+ I + R + + G GK Sbjct: 128 KPVQAPLFGSPLDQRYNFESFVEGSSNRVALAAARTIAEAGAGAVRFNPLFIHSSVGLGK 187 Query: 78 SCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLED------------IDLLDFNDTQ 125 + L + + + + L + R + D IDLL +D Q Sbjct: 188 THLLQAIALAALQSARAPRVVYLTAEYFMWRFATAIRDNDALSLKESLRNIDLLVIDDMQ 247 Query: 126 LF----------HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD- 174 H++N + +++ A P + SRL+ +++ PD Sbjct: 248 FLQGKSIQHEFCHLLNMLLDSAKQVVVAADRAPWELESLDSRVRSRLQGGVAIEMEGPDY 307 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211 D LE + ++ RQ + I+ + RS+ Sbjct: 308 DMRLEMLKRRLDTARQDDTSLDIPQEILSHVARSVTA 344 >gi|225619164|ref|YP_002720390.1| chromosomal replication initiation protein [Brachyspira hyodysenteriae WA1] gi|225213983|gb|ACN82717.1| chromosomal replication initiation protein [Brachyspira hyodysenteriae WA1] Length = 461 Score = 64.0 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 32/220 (14%), Positives = 69/220 (31%), Gaps = 28/220 (12%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKS------ 88 D+ + + S P + + + G G GK+ L + Sbjct: 128 FRFDNFIQGNNNRYVFEAAKYVSSNPGKEYNPLYIYGSVGIGKTHLLQAIGNSYMQNNPN 187 Query: 89 -----------RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ------LFHIIN 131 R S + I K + + +D L ++ LF I Sbjct: 188 AKVLYIDGSGFRDEYVSGLQSKKPEIFKRRYKSLDMLLLDDLQLLESAQETSKELFEIFQ 247 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 ++ ++ + P L +R + + ++ I P + +I + D Sbjct: 248 ALDNASKQMVFVSDKPPKELRNIEARLKNRFEKSLILSIEPPQYETRLAIIERKLFDLHT 307 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231 ID+++ Y+ + + + E + L++ M IT Sbjct: 308 SIDEEVMKYMAENITTDVRKIEGAIRA--YLSIRDLMKIT 345 >gi|86169603|gb|ABC87041.1| chromosomal replication initiation protein [Fructobacillus ficulneus] Length = 262 Score = 64.0 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 52/138 (37%), Gaps = 9/138 (6%) Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 +L++DI + + F+ N++ + ++MT+ +P L L SR +A Sbjct: 56 LLIDDIQFWSGKEKVQEEFFNTFNALTKDGKQIVMTSDRYPTDIPDLLTRLTSRFEAGIT 115 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---RSLVFAEKLVDKMDNLAL 224 I PD ++ + + I ++ I ++++ RSL A + Sbjct: 116 QDIQKPDLPTRVAILRNLQERNDLNIPNEVLELIGEKIDTNVRSLEGAFHKFEAKVRY-- 173 Query: 225 SRGMGITRSLAAEVLKET 242 T A +L E Sbjct: 174 -MNKPATIETAQSILSEL 190 >gi|197118824|ref|YP_002139251.1| recombination factor protein RarA [Geobacter bemidjiensis Bem] gi|197088184|gb|ACH39455.1| stalled replication fork rescue ATPase [Geobacter bemidjiensis Bem] Length = 434 Score = 64.0 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 45/194 (23%), Positives = 78/194 (40%), Gaps = 26/194 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRF--SNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I GP GSGK+ LA I ++ +RS S I + I ++ ED T Sbjct: 52 LIFWGPPGSGKTTLARIIANATRSHFIFFSAIMSGIKEIREVVKEA---EDTLKYQGKRT 108 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + + ++ A T S+ V P L SR V+ + Sbjct: 109 ILFVDEIHRFNKSQQDAFLPHVERGTFTIIGATTENPSFEVIAP-LLSR---CKVLVLQP 164 Query: 173 PDDDFLEKVIVKMFADRQIFIDK----KLAAYIVQRMERSLVFAEKLVDKMDNLA-LSRG 227 D+ L K++ ADR+ + + A + E++ A ++ ++ + L+ Sbjct: 165 LSDEDLLKILENALADRERGLGELELSATAEALAFMAEQAAGDARVALNTLETASRLAHQ 224 Query: 228 MGITRSLAAEVLKE 241 IT A E +++ Sbjct: 225 GEITLESAREAVQK 238 >gi|294851411|ref|ZP_06792084.1| chromosomal replication initiator protein DnaA [Brucella sp. NVSL 07-0026] gi|294820000|gb|EFG36999.1| chromosomal replication initiator protein DnaA [Brucella sp. NVSL 07-0026] Length = 566 Score = 63.6 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 29/206 (14%), Positives = 70/206 (33%), Gaps = 30/206 (14%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCL------- 80 P + D + ++ A+ + S + + G GK+ L Sbjct: 221 PLDPRYTFDTFVDGASNRVALAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 280 Query: 81 --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124 A + + + N A S L D ++++D+ L Sbjct: 281 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 339 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + H++N++ +++ A P + SRL+ ++++ PD + +++ + Sbjct: 340 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRR 399 Query: 185 MFADRQIF-IDKKLAAYIVQRMERSL 209 A Q + I+ + R++ Sbjct: 400 RLASAQCEDASLDIGEEILAHVARTV 425 >gi|209554480|ref|YP_002284414.1| chromosomal replication initiator protein DnaA [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|209541981|gb|ACI60210.1| chromosomal replication initiator protein DnaA [Ureaplasma urealyticum serovar 10 str. ATCC 33699] Length = 457 Score = 63.6 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 40/206 (19%), Positives = 80/206 (38%), Gaps = 33/206 (16%) Query: 30 FSFPRCL-GISRDDLLVHSAIEQAVRLIDSW--PSWPSRVVI----LVGPSGSGKSCLAN 82 F+F + + ++L++ +AV+ I+S ++ + + L G G GK+ + Sbjct: 105 FNFSDEIMRYNFNNLVISDFNRKAVKAIESLLSTNYENSSMCNPLFLFGKVGIGKTHIVA 164 Query: 83 I----WSDKSRSTRF-------------SNIAKSLDSI-----LIDTRKPVLLEDIDLLD 120 +++ + + + S AK + I + ++ EDI + Sbjct: 165 AAGNQFANSNPNLKIYYYEGQDFFRKFCSASAKGTSHVEEFKKEIASANLLIFEDIQNIQ 224 Query: 121 FNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 D+ F+I N I +++T+ P + SRL + KIS PD + Sbjct: 225 SRDSAAELFFNIFNDIKLNGGKIILTSDRTPNELNGFHDRIISRLASGLQCKISQPDKNE 284 Query: 178 LEKVIVKMFA-DRQIFIDKKLAAYIV 202 K+I F ++ I + YI Sbjct: 285 AIKIINNWFEFKKKYQITDEAKEYIA 310 >gi|225550892|ref|ZP_03771841.1| chromosomal replication initiator protein DnaA [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225380046|gb|EEH02408.1| chromosomal replication initiator protein DnaA [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 457 Score = 63.6 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 40/206 (19%), Positives = 80/206 (38%), Gaps = 33/206 (16%) Query: 30 FSFPRCL-GISRDDLLVHSAIEQAVRLIDSW--PSWPSRVVI----LVGPSGSGKSCLAN 82 F+F + + ++L++ +AV+ I+S ++ + + L G G GK+ + Sbjct: 105 FNFSDEIMRYNFNNLVISDFNRKAVKAIESLLSTNYENSSMCNPLFLFGKVGIGKTHIVA 164 Query: 83 I----WSDKSRSTRF-------------SNIAKSLDSI-----LIDTRKPVLLEDIDLLD 120 +++ + + + S AK + I + ++ EDI + Sbjct: 165 AAGNQFANSNPNLKIYYYEGQDFFRKFCSASAKGTSHVEEFKKEIASANLLIFEDIQNIQ 224 Query: 121 FNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 D+ F+I N I +++T+ P + SRL + KIS PD + Sbjct: 225 SRDSAAELFFNIFNDIKLNGGKIILTSDRTPNELNGFHDRIISRLASGLQCKISQPDKNE 284 Query: 178 LEKVIVKMFA-DRQIFIDKKLAAYIV 202 K+I F ++ I + YI Sbjct: 285 AIKIINNWFEFKKKYQITDEAKEYIA 310 >gi|171920679|ref|ZP_02931905.1| chromosomal replication initiator protein DnaA [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|185178837|ref|ZP_02554521.2| chromosomal replication initiator protein DnaA [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024340|ref|ZP_02570604.2| chromosomal replication initiator protein DnaA [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518434|ref|ZP_02556546.2| chromosomal replication initiator protein DnaA [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524209|ref|ZP_03004269.1| chromosomal replication initiator protein DnaA [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867373|ref|ZP_03079377.1| chromosomal replication initiator protein DnaA [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273421|ref|ZP_03205957.1| chromosomal replication initiator protein DnaA [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225551454|ref|ZP_03772400.1| chromosomal replication initiator protein DnaA [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|171903415|gb|EDT49704.1| chromosomal replication initiator protein DnaA [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184209472|gb|EDU06515.1| chromosomal replication initiator protein DnaA [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188018604|gb|EDU56644.1| chromosomal replication initiator protein DnaA [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188998012|gb|EDU67109.1| chromosomal replication initiator protein DnaA [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195660031|gb|EDX53411.1| chromosomal replication initiator protein DnaA [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660849|gb|EDX54102.1| chromosomal replication initiator protein DnaA [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198249941|gb|EDY74721.1| chromosomal replication initiator protein DnaA [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225379269|gb|EEH01634.1| chromosomal replication initiator protein DnaA [Ureaplasma urealyticum serovar 8 str. ATCC 27618] Length = 457 Score = 63.6 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 40/206 (19%), Positives = 80/206 (38%), Gaps = 33/206 (16%) Query: 30 FSFPRCL-GISRDDLLVHSAIEQAVRLIDSW--PSWPSRVVI----LVGPSGSGKSCLAN 82 F+F + + ++L++ +AV+ I+S ++ + + L G G GK+ + Sbjct: 105 FNFSDEIMRYNFNNLVISDFNRKAVKAIESLLSTNYENSSMCNPLFLFGKVGIGKTHIVA 164 Query: 83 I----WSDKSRSTRF-------------SNIAKSLDSI-----LIDTRKPVLLEDIDLLD 120 +++ + + + S AK + I + ++ EDI + Sbjct: 165 AAGNQFANSNPNLKIYYYEGQDFFRKFCSASAKGTSHVEEFKKEIASANLLIFEDIQNIQ 224 Query: 121 FNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 D+ F+I N I +++T+ P + SRL + KIS PD + Sbjct: 225 SRDSAAELFFNIFNDIKLNGGKIILTSDRTPNELNGFHDRIISRLASGLQCKISQPDKNE 284 Query: 178 LEKVIVKMFA-DRQIFIDKKLAAYIV 202 K+I F ++ I + YI Sbjct: 285 AIKIINNWFEFKKKYQITDEAKEYIA 310 >gi|313902377|ref|ZP_07835780.1| Recombination protein MgsA [Thermaerobacter subterraneus DSM 13965] gi|313467308|gb|EFR62819.1| Recombination protein MgsA [Thermaerobacter subterraneus DSM 13965] Length = 513 Score = 63.6 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 46/254 (18%), Positives = 91/254 (35%), Gaps = 43/254 (16%) Query: 18 NDQPKNKEEQLFFSFPRCLGISRDDL-----LVHSAIEQAVRLIDSWPSWPSRVVILVGP 72 + +Q + + ++ LV R I++ +IL GP Sbjct: 21 RAAEERARQQAPLAERMRPR-TLEEFVGQQHLVGPG-RLLRRAIEADR---LGSIILWGP 75 Query: 73 SGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLF 127 GSGK+ LA I + +R+ + L ++ + R+ LE + F D Sbjct: 76 PGSGKTTLARIIARTTRAHFEPLNAVTAGVGDLRRVVEEARERWALEGRSTVLFVDEV-- 133 Query: 128 HIINSIHQYD-------SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 H N Q + + T + C+P L SR A + ++ DD + + Sbjct: 134 HRWNRAQQDALLPHLESGLVALIGATTENPYFACVPPLVSR---ARIFRLEPLSDDDMRQ 190 Query: 181 VIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG------ 227 ++++ AD R + +D ++V+ A ++ ++ L+ Sbjct: 191 LLLRALADPERGLGRYRAEVDPAALEHLVRVAG---GDARTALNALELAVLTTPPGADGV 247 Query: 228 MGITRSLAAEVLKE 241 IT + A E ++ Sbjct: 248 RRITLAAAEESIQR 261 >gi|237814482|ref|ZP_04593480.1| chromosomal replication initiator protein DnaA [Brucella abortus str. 2308 A] gi|237789319|gb|EEP63529.1| chromosomal replication initiator protein DnaA [Brucella abortus str. 2308 A] Length = 566 Score = 63.6 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 29/206 (14%), Positives = 70/206 (33%), Gaps = 30/206 (14%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCL------- 80 P + D + ++ A+ + S + + G GK+ L Sbjct: 221 PLDPRYTFDTFVDGASNRVALAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 280 Query: 81 --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124 A + + + N A S L D ++++D+ L Sbjct: 281 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 339 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + H++N++ +++ A P + SRL+ ++++ PD + +++ + Sbjct: 340 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRR 399 Query: 185 MFADRQIF-IDKKLAAYIVQRMERSL 209 A Q + I+ + R++ Sbjct: 400 RLASAQCEDASLDIGEEILAHVARTV 425 >gi|306839965|ref|ZP_07472759.1| chromosomal replication initiator protein DnaA [Brucella sp. NF 2653] gi|306404929|gb|EFM61214.1| chromosomal replication initiator protein DnaA [Brucella sp. NF 2653] Length = 546 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 29/206 (14%), Positives = 70/206 (33%), Gaps = 30/206 (14%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCL------- 80 P + D + ++ A+ + S + + G GK+ L Sbjct: 201 PLDPRYTFDTFVDGASNRVALAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 260 Query: 81 --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124 A + + + N A S L D ++++D+ L Sbjct: 261 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 319 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + H++N++ +++ A P + SRL+ ++++ PD + +++ + Sbjct: 320 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRR 379 Query: 185 MFADRQIF-IDKKLAAYIVQRMERSL 209 A Q + I+ + R++ Sbjct: 380 RLASAQCEDASLDIGEEILAHVARTV 405 >gi|254731347|ref|ZP_05189925.1| chromosomal replication initiation protein [Brucella abortus bv. 4 str. 292] Length = 540 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 29/206 (14%), Positives = 70/206 (33%), Gaps = 30/206 (14%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCL------- 80 P + D + ++ A+ + S + + G GK+ L Sbjct: 195 PLDPRYTFDTFVDGASNRVALAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 254 Query: 81 --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124 A + + + N A S L D ++++D+ L Sbjct: 255 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 313 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + H++N++ +++ A P + SRL+ ++++ PD + +++ + Sbjct: 314 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRR 373 Query: 185 MFADRQIF-IDKKLAAYIVQRMERSL 209 A Q + I+ + R++ Sbjct: 374 RLASAQCEDASLDIGEEILAHVARTV 399 >gi|306842704|ref|ZP_07475347.1| chromosomal replication initiator protein DnaA [Brucella sp. BO2] gi|306287150|gb|EFM58652.1| chromosomal replication initiator protein DnaA [Brucella sp. BO2] Length = 540 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 29/206 (14%), Positives = 70/206 (33%), Gaps = 30/206 (14%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCL------- 80 P + D + ++ A+ + S + + G GK+ L Sbjct: 195 PLDPRYTFDTFVDGASNRVALAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 254 Query: 81 --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124 A + + + N A S L D ++++D+ L Sbjct: 255 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 313 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + H++N++ +++ A P + SRL+ ++++ PD + +++ + Sbjct: 314 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRR 373 Query: 185 MFADRQIF-IDKKLAAYIVQRMERSL 209 A Q + I+ + R++ Sbjct: 374 RLASAQCEDASLDIGEEILAHVARTV 399 >gi|306843603|ref|ZP_07476204.1| chromosomal replication initiator protein DnaA [Brucella sp. BO1] gi|306276294|gb|EFM57994.1| chromosomal replication initiator protein DnaA [Brucella sp. BO1] Length = 546 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 29/206 (14%), Positives = 70/206 (33%), Gaps = 30/206 (14%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCL------- 80 P + D + ++ A+ + S + + G GK+ L Sbjct: 201 PLDPRYTFDTFVDGASNRVALAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 260 Query: 81 --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124 A + + + N A S L D ++++D+ L Sbjct: 261 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 319 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + H++N++ +++ A P + SRL+ ++++ PD + +++ + Sbjct: 320 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRR 379 Query: 185 MFADRQIF-IDKKLAAYIVQRMERSL 209 A Q + I+ + R++ Sbjct: 380 RLASAQCEDASLDIGEEILAHVARTV 405 >gi|254718225|ref|ZP_05180036.1| chromosomal replication initiation protein [Brucella sp. 83/13] Length = 540 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 29/206 (14%), Positives = 70/206 (33%), Gaps = 30/206 (14%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCL------- 80 P + D + ++ A+ + S + + G GK+ L Sbjct: 195 PLDPRYTFDTFVDGASNRVALAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 254 Query: 81 --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124 A + + + N A S L D ++++D+ L Sbjct: 255 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 313 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + H++N++ +++ A P + SRL+ ++++ PD + +++ + Sbjct: 314 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRR 373 Query: 185 MFADRQIF-IDKKLAAYIVQRMERSL 209 A Q + I+ + R++ Sbjct: 374 RLASAQCEDASLDIGEEILAHVARTV 399 >gi|153007348|ref|YP_001368563.1| chromosomal replication initiation protein [Ochrobactrum anthropi ATCC 49188] gi|151559236|gb|ABS12734.1| chromosomal replication initiator protein DnaA [Ochrobactrum anthropi ATCC 49188] Length = 520 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 76/220 (34%), Gaps = 34/220 (15%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCL------- 80 P + D + ++ A+ + S + + G GK+ L Sbjct: 175 PLDPRYTFDSFVDGASNRVALAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 234 Query: 81 --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124 A + + + N A S L D ++++D+ L Sbjct: 235 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 293 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD-----DDFLE 179 + H++N++ +++ A P + SRL+ ++++ PD + Sbjct: 294 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYDMRVEMLRR 353 Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 ++ V D + I +++ +++ + + S E +++ Sbjct: 354 RLAVAQAEDSSLNIGEEILSHVARTVTGSGRELEGAFNQL 393 >gi|189023269|ref|YP_001934037.1| chromosomal replication initiation protein [Brucella abortus S19] gi|225851547|ref|YP_002731780.1| chromosomal replication initiation protein [Brucella melitensis ATCC 23457] gi|297247409|ref|ZP_06931127.1| chromosomal replication initiator protein DnaA [Brucella abortus bv. 5 str. B3196] gi|189018841|gb|ACD71563.1| chromosomal replication initiation protein [Brucella abortus S19] gi|225639912|gb|ACN99825.1| chromosomal replication initiator protein DnaA [Brucella melitensis ATCC 23457] gi|297174578|gb|EFH33925.1| chromosomal replication initiator protein DnaA [Brucella abortus bv. 5 str. B3196] Length = 546 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 29/206 (14%), Positives = 70/206 (33%), Gaps = 30/206 (14%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCL------- 80 P + D + ++ A+ + S + + G GK+ L Sbjct: 201 PLDPRYTFDTFVDGASNRVALAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 260 Query: 81 --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124 A + + + N A S L D ++++D+ L Sbjct: 261 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 319 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + H++N++ +++ A P + SRL+ ++++ PD + +++ + Sbjct: 320 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRR 379 Query: 185 MFADRQIF-IDKKLAAYIVQRMERSL 209 A Q + I+ + R++ Sbjct: 380 RLASAQCEDASLDIGEEILAHVARTV 405 >gi|325267547|ref|ZP_08134199.1| DNA-directed DNA replication initiator protein DnaA [Kingella denitrificans ATCC 33394] gi|324980897|gb|EGC16557.1| DNA-directed DNA replication initiator protein DnaA [Kingella denitrificans ATCC 33394] Length = 559 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 32/232 (13%), Positives = 75/232 (32%), Gaps = 28/232 (12%) Query: 38 ISRDDLLVHSAIEQ----AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRF 93 + D L+V + A+ + ++ + G +G GK+ L ++ + Sbjct: 226 YTFDTLVVGKGNQLPVQVAMSIAENPGDNMYNPFFVYGSTGLGKTHLVQAVGNRLLALNP 285 Query: 94 SNIAKSLDSILIDT--------------------RKPVLLEDIDLLDFNDTQLFHIINSI 133 + + + S ++++DI + D + Sbjct: 286 AAKVRYMHSNEYLKTFMTTVKNKSWDAFKQQYLHYDLLIIDDIQFIQGKDRTMEEFFFLF 345 Query: 134 H---QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 + +++T P L SR V+I P+ + ++ Sbjct: 346 EHFHSRNQQIILTCDQLPSGLEHMEKRLISRFSWGMTVRIEPPELEMRIDILEHKAKKMD 405 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDK-MDNLALSRGMGITRSLAAEVLKE 241 I D+ A +I Q ++ S+ E +++ + + I LA L++ Sbjct: 406 IQFDEGAALFIAQNVKASVRELEGALNRVIARCRFEKRNVIDIDLATSALQD 457 >gi|32471553|ref|NP_864546.1| chromosomal replication initiator protein dnaA [Rhodopirellula baltica SH 1] gi|32443394|emb|CAD72227.1| chromosomal replication initiator protein dnaA [Rhodopirellula baltica SH 1] Length = 591 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 32/203 (15%), Positives = 69/203 (33%), Gaps = 33/203 (16%) Query: 19 DQPKNKEEQLFFSFP-RCLGISR--DDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGP 72 P++ + +L P R D + E A + + PS + + L GP Sbjct: 229 STPRSSKSKLP-PLPESQPTGGRTLDSFITGPCNEFAFSAAMMAVATPSVATP-LFLHGP 286 Query: 73 SGSGKSCLANIWSDK------SRSTRFSNIAKSLDSILIDTRK--------------PVL 112 +G+GKS L +++ R + + ++ +L Sbjct: 287 TGTGKSHLLAALANEFRTRRRMRRVVLLTAEQFTNDFVVSVGSTGLPAFRRRYRDVDALL 346 Query: 113 LEDIDLLDFN----DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168 ++D+ L L+ + L+ +A P ++ R+ + V Sbjct: 347 IDDVHFLAAKTATLREALYTVETLA-SAGKPLVFSANLPPSDIRGLTGEVAGRMASGLVC 405 Query: 169 KISLPDDDFLEKVIVKMFADRQI 191 ++ D + K++ +M A R + Sbjct: 406 PLAALDQETRFKLLQRMVATRCV 428 >gi|161617992|ref|YP_001591879.1| chromosomal replication initiation protein [Brucella canis ATCC 23365] gi|161334803|gb|ABX61108.1| chromosomal replication initiator protein DnaA [Brucella canis ATCC 23365] Length = 546 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 29/206 (14%), Positives = 70/206 (33%), Gaps = 30/206 (14%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCL------- 80 P + D + ++ A+ + S + + G GK+ L Sbjct: 201 PLDPRYTFDTFVDGASNRVALAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 260 Query: 81 --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124 A + + + N A S L D ++++D+ L Sbjct: 261 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 319 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + H++N++ +++ A P + SRL+ ++++ PD + +++ + Sbjct: 320 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRR 379 Query: 185 MFADRQIF-IDKKLAAYIVQRMERSL 209 A Q + I+ + R++ Sbjct: 380 RLASAQCEDASLDIGEEILAHVARTV 405 >gi|254690318|ref|ZP_05153572.1| chromosomal replication initiation protein [Brucella abortus bv. 6 str. 870] gi|254696435|ref|ZP_05158263.1| chromosomal replication initiation protein [Brucella abortus bv. 2 str. 86/8/59] gi|254700819|ref|ZP_05162647.1| chromosomal replication initiation protein [Brucella suis bv. 5 str. 513] gi|254707298|ref|ZP_05169126.1| chromosomal replication initiation protein [Brucella pinnipedialis M163/99/10] gi|254709163|ref|ZP_05170974.1| chromosomal replication initiation protein [Brucella pinnipedialis B2/94] gi|256030687|ref|ZP_05444301.1| chromosomal replication initiation protein [Brucella pinnipedialis M292/94/1] gi|256045791|ref|ZP_05448669.1| chromosomal replication initiation protein [Brucella melitensis bv. 1 str. Rev.1] gi|256060146|ref|ZP_05450328.1| chromosomal replication initiation protein [Brucella neotomae 5K33] gi|256112510|ref|ZP_05453431.1| chromosomal replication initiation protein [Brucella melitensis bv. 3 str. Ether] gi|256258572|ref|ZP_05464108.1| chromosomal replication initiation protein [Brucella abortus bv. 9 str. C68] Length = 540 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 29/206 (14%), Positives = 70/206 (33%), Gaps = 30/206 (14%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCL------- 80 P + D + ++ A+ + S + + G GK+ L Sbjct: 195 PLDPRYTFDTFVDGASNRVALAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 254 Query: 81 --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124 A + + + N A S L D ++++D+ L Sbjct: 255 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 313 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + H++N++ +++ A P + SRL+ ++++ PD + +++ + Sbjct: 314 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRR 373 Query: 185 MFADRQIF-IDKKLAAYIVQRMERSL 209 A Q + I+ + R++ Sbjct: 374 RLASAQCEDASLDIGEEILAHVARTV 399 >gi|15964121|ref|NP_384474.1| chromosomal replication initiation protein [Sinorhizobium meliloti 1021] gi|307301266|ref|ZP_07581028.1| chromosomal replication initiator protein DnaA [Sinorhizobium meliloti BL225C] gi|307317937|ref|ZP_07597374.1| chromosomal replication initiator protein DnaA [Sinorhizobium meliloti AK83] gi|15073297|emb|CAC41805.1| Chromosomal replication initiator [Sinorhizobium meliloti 1021] gi|306896339|gb|EFN27088.1| chromosomal replication initiator protein DnaA [Sinorhizobium meliloti AK83] gi|306903722|gb|EFN34309.1| chromosomal replication initiator protein DnaA [Sinorhizobium meliloti BL225C] Length = 507 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 33/207 (15%), Positives = 69/207 (33%), Gaps = 28/207 (13%) Query: 33 PRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRV--VILVGPSGSGKSCLANIWSDK 87 P D + S+ A+ I + R + + G GK+ L + Sbjct: 165 PLDQRYGFDSFVEGSSNRVALAAARTIAEAGAGAVRFNPLFIHSSVGLGKTHLLQAIALA 224 Query: 88 SRSTRFSNIAKSLDSILIDTRKPVLLED------------IDLLDFNDTQLF-------- 127 + + + L + R + D IDLL +D Q Sbjct: 225 ALQSARAPRVVYLTAEYFMWRFATAIRDNDALSLKESLRNIDLLIIDDMQFLQGKSIQHE 284 Query: 128 --HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 H++N + +++ A P + SRL+ +++ PD + +++ + Sbjct: 285 FCHLLNMLLDSAKQVVVAADRAPWELESLDSRVRSRLQGGVAIEMEGPDYEMRLEMLKRR 344 Query: 186 F-ADRQIFIDKKLAAYIVQRMERSLVF 211 A RQ ++ I+ + R++ Sbjct: 345 LEAARQDDASLEIPLEILSHVARNVTA 371 >gi|327537593|gb|EGF24307.1| chromosomal replication initiator protein dnaA [Rhodopirellula baltica WH47] Length = 578 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 32/203 (15%), Positives = 69/203 (33%), Gaps = 33/203 (16%) Query: 19 DQPKNKEEQLFFSFP-RCLGISR--DDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGP 72 P++ + +L P R D + E A + + PS + + L GP Sbjct: 216 STPRSSKSKLP-PLPESQPTGGRTLDSFITGPCNEFAFSAAMMAVATPSVATP-LFLHGP 273 Query: 73 SGSGKSCLANIWSDK------SRSTRFSNIAKSLDSILIDTRK--------------PVL 112 +G+GKS L +++ R + + ++ +L Sbjct: 274 TGTGKSHLLAALANEFRTRRRMRRVVLLTAEQFTNDFVVSVGSTGLPAFRRRYRDVDALL 333 Query: 113 LEDIDLLDFN----DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168 ++D+ L L+ + L+ +A P ++ R+ + V Sbjct: 334 IDDVHFLAAKTATLREALYTVETLA-SAGKPLVFSANLPPSDIRGLTGEVAGRMASGLVC 392 Query: 169 KISLPDDDFLEKVIVKMFADRQI 191 ++ D + K++ +M A R + Sbjct: 393 PLAALDQETRFKLLQRMVATRCV 415 >gi|239830847|ref|ZP_04679176.1| chromosomal replication initiator protein DnaA [Ochrobactrum intermedium LMG 3301] gi|239823114|gb|EEQ94682.1| chromosomal replication initiator protein DnaA [Ochrobactrum intermedium LMG 3301] Length = 534 Score = 62.9 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 78/220 (35%), Gaps = 34/220 (15%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCL------- 80 P + D + ++ A+ + S + + G GK+ L Sbjct: 189 PLDPRYTFDSFVDGASNRVALAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 248 Query: 81 --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124 A + + + N A S L D ++++D+ L Sbjct: 249 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 307 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + H++N++ +++ A P + SRL+ ++++ PD + +++ + Sbjct: 308 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRVEMLRR 367 Query: 185 MFADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 A Q + I +++ +++ + + S E +++ Sbjct: 368 RLAAAQAEDPSLTIGEEILSHVARTVTGSGRELEGAFNQL 407 >gi|163842278|ref|YP_001626682.1| chromosomal replication initiation protein [Brucella suis ATCC 23445] gi|163673001|gb|ABY37112.1| chromosomal replication initiator protein DnaA [Brucella suis ATCC 23445] Length = 546 Score = 62.9 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 29/206 (14%), Positives = 70/206 (33%), Gaps = 30/206 (14%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCL------- 80 P + D + ++ A+ + S + + G GK+ L Sbjct: 201 PLDPRYTFDTFVDGASNRVALAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 260 Query: 81 --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124 A + + + N A S L D ++++D+ L Sbjct: 261 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 319 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + H++N++ +++ A P + SRL+ ++++ PD + +++ + Sbjct: 320 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRR 379 Query: 185 MFADRQIF-IDKKLAAYIVQRMERSL 209 A Q + I+ + R++ Sbjct: 380 RLASAQCEDASLDIGEEILAHVARTV 405 >gi|254705186|ref|ZP_05167014.1| chromosomal replication initiation protein [Brucella suis bv. 3 str. 686] Length = 540 Score = 62.9 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 29/206 (14%), Positives = 70/206 (33%), Gaps = 30/206 (14%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCL------- 80 P + D + ++ A+ + S + + G GK+ L Sbjct: 195 PLDPRYTFDTFVDGASNRVALAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 254 Query: 81 --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124 A + + + N A S L D ++++D+ L Sbjct: 255 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 313 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + H++N++ +++ A P + SRL+ ++++ PD + +++ + Sbjct: 314 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRR 373 Query: 185 MFADRQIF-IDKKLAAYIVQRMERSL 209 A Q + I+ + R++ Sbjct: 374 RLASAQCEDASLDIGEEILAHVARTV 399 >gi|86169599|gb|ABC87039.1| chromosomal replication initiation protein [Leuconostoc fallax KCTC 3537] Length = 219 Score = 62.9 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 55/142 (38%), Gaps = 9/142 (6%) Query: 107 TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 T +L++DI L D + F+ N++ + ++MT+ P + L +R + Sbjct: 31 TVDLLLIDDIQFLSGKDKIQEEFFNTFNALTKTGRQIVMTSDQLPKNIPDLQQRLTTRFE 90 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---RSLVFAEKLVDKMD 220 A + I PD ++ + I + + I ++++ RSL A + Sbjct: 91 AGISMDILQPDLPTRVAILQNKAETDGLNIPRDVLELIAEKVDNNVRSLEGAFHKFEATL 150 Query: 221 NLALSRGMGITRSLAAEVLKET 242 T+ A ++L + Sbjct: 151 RF---MNKPATKETAQQILGDL 169 >gi|4378841|gb|AAD19709.1| DnaA [Zymomonas mobilis subsp. mobilis ZM4] Length = 285 Score = 62.9 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 58/163 (35%), Gaps = 33/163 (20%) Query: 12 VPDKQKNDQPKNKEE---QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSR 65 VP K+ P+ K E Q F + D+ +V A + A R ++ Sbjct: 127 VPATPKSTSPEKKAEGEDQNQFE----ERYNFDNFVVGKANDLAYRAACTFAEGGKLDFN 182 Query: 66 VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------------ILI 105 + L G +G GK+ L + + ++ A + + + Sbjct: 183 PLFLYGGTGLGKTHLMHAVGIEYLKRHPNSTALYMSAEKFMYDFVASMRAKDTHSFKARL 242 Query: 106 DTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTAR 145 + ++++D+ + D + FH +N + L+++A Sbjct: 243 RSADLLMIDDVQFIAGKDSTQEEFFHTMNEVITAGRRLVISAD 285 >gi|17988226|ref|NP_540860.1| chromosomal replication initiation protein [Brucella melitensis bv. 1 str. 16M] gi|260546286|ref|ZP_05822026.1| chromosomal replication initiation protein [Brucella abortus NCTC 8038] gi|265999709|ref|ZP_05467476.2| chromosomal replication initiation protein [Brucella melitensis bv. 2 str. 63/9] gi|17983991|gb|AAL53124.1| chromosomal replication initiator protein dnaa [Brucella melitensis bv. 1 str. 16M] gi|260096393|gb|EEW80269.1| chromosomal replication initiation protein [Brucella abortus NCTC 8038] gi|263095429|gb|EEZ19030.1| chromosomal replication initiation protein [Brucella melitensis bv. 2 str. 63/9] gi|326408012|gb|ADZ65077.1| chromosomal replication initiation protein [Brucella melitensis M28] gi|326537730|gb|ADZ85945.1| chromosomal replication initiator protein DnaA [Brucella melitensis M5-90] Length = 527 Score = 62.9 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 29/206 (14%), Positives = 70/206 (33%), Gaps = 30/206 (14%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCL------- 80 P + D + ++ A+ + S + + G GK+ L Sbjct: 182 PLDPRYTFDTFVDGASNRVALAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 241 Query: 81 --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124 A + + + N A S L D ++++D+ L Sbjct: 242 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 300 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + H++N++ +++ A P + SRL+ ++++ PD + +++ + Sbjct: 301 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRR 360 Query: 185 MFADRQIF-IDKKLAAYIVQRMERSL 209 A Q + I+ + R++ Sbjct: 361 RLASAQCEDASLDIGEEILAHVARTV 386 >gi|260563084|ref|ZP_05833570.1| chromosomal replication initiation protein [Brucella melitensis bv. 1 str. 16M] gi|260153100|gb|EEW88192.1| chromosomal replication initiation protein [Brucella melitensis bv. 1 str. 16M] Length = 529 Score = 62.9 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 29/206 (14%), Positives = 70/206 (33%), Gaps = 30/206 (14%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCL------- 80 P + D + ++ A+ + S + + G GK+ L Sbjct: 184 PLDPRYTFDTFVDGASNRVALAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 243 Query: 81 --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124 A + + + N A S L D ++++D+ L Sbjct: 244 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 302 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + H++N++ +++ A P + SRL+ ++++ PD + +++ + Sbjct: 303 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRR 362 Query: 185 MFADRQIF-IDKKLAAYIVQRMERSL 209 A Q + I+ + R++ Sbjct: 363 RLASAQCEDASLDIGEEILAHVARTV 388 >gi|15678268|ref|NP_275383.1| replication factor C large subunit [Methanothermobacter thermautotrophicus str. Delta H] gi|42559321|sp|O26342|RFCL_METTH RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit; AltName: Full=mthRFC large subunit gi|2621289|gb|AAB84746.1| replication factor C, large subunit [Methanothermobacter thermautotrophicus str. Delta H] Length = 479 Score = 62.9 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 72/196 (36%), Gaps = 37/196 (18%) Query: 54 RLIDSWPSW-PSRVVILVGPSGSGKSCLANIWSDK-SRSTRFSNIAKSLDSILIDTRK-- 109 I +W + P + ++LVGP G+GK+ LA+I + S + + + L+ + Sbjct: 27 EWIKAWKAGKPQKPLLLVGPPGTGKTTLAHIIGKEFSDTLELNASDRRSQDALMRSAGEA 86 Query: 110 ------------PVLLEDIDLLDFND-TQLFHIINS-IHQYDSSLLMTARTFPVSWGVCL 155 ++L+++D + N+ IN I + +++TA Sbjct: 87 SATRSLFNHDLKLIILDEVDGIHGNEDRGGVQAINRIIKESRHPMVLTANDPYSK----- 141 Query: 156 PDLCSRLKA----ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211 RL++ V+ + + + ++ I + + + RS Sbjct: 142 -----RLQSIKPRCRVLNLRKVHTSSIAAALRRICRAEGIECPDDVLRELAK---RSRGD 193 Query: 212 AEKLVDKMDNLALSRG 227 ++ D A++ G Sbjct: 194 LRSAIN--DLEAMAEG 207 >gi|2909713|gb|AAC12963.1| DnaA [Lactococcus lactis subsp. cremoris MG1363] Length = 272 Score = 62.9 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 53/123 (43%), Gaps = 1/123 (0%) Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 + F+ N+++ S +++T+ P L SR I+ PD + +++ Sbjct: 51 NEFFNTFNALYDKGSQIVLTSDRIPQELNNLEDRLVSRFSWGLTTDITAPDYETRMAILL 110 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI-TRSLAAEVLKET 242 + + +YI +++ ++ E +++++ +A + G+ I A++ L+ Sbjct: 111 IKSESSHLEFPSETLSYIAGQIDSNVRELEGALNRVEFVARANGISIVDIETASQALRSL 170 Query: 243 QQC 245 + Sbjct: 171 KNA 173 >gi|317122073|ref|YP_004102076.1| recombination protein MgsA [Thermaerobacter marianensis DSM 12885] gi|315592053|gb|ADU51349.1| Recombination protein MgsA [Thermaerobacter marianensis DSM 12885] Length = 500 Score = 62.9 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 38/202 (18%), Positives = 81/202 (40%), Gaps = 33/202 (16%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLL 119 +IL GP GSGK+ LA I + +R+ + L ++ + ++ LE + Sbjct: 68 GSIILWGPPGSGKTTLARIIARTTRAHFEPLNAVTAGVADLRRVVEEAKERRALEGRSTV 127 Query: 120 DFNDTQLFHIINSIHQYD-------SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 F D H N Q + + T + C+P L SR A + ++ Sbjct: 128 LFVDEV--HRWNRAQQDALLPHLESGLVALIGATTENPYFACVPPLVSR---ARIFRLEP 182 Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 D+ + +++++ AD R + ++ + ++V+ A ++ ++ L+ Sbjct: 183 LSDEDVRRLLLRALADPERGLGNYRVEVEPEALDHLVRVAG---GDARSALNALELAVLT 239 Query: 226 RG------MGITRSLAAEVLKE 241 IT ++A E +++ Sbjct: 240 TPPGEDGVRRITLAVAEESIQK 261 >gi|438884|gb|AAA26258.1| dnaA [Sinorhizobium meliloti] gi|755069|gb|AAA91097.1| dnaA [Sinorhizobium meliloti] Length = 507 Score = 62.9 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 33/207 (15%), Positives = 69/207 (33%), Gaps = 28/207 (13%) Query: 33 PRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRV--VILVGPSGSGKSCLANIWSDK 87 P D + S+ A+ I + R + + G GK+ L + Sbjct: 165 PLDQRYGFDSFVEGSSNRVALAAARTIAEAGAGAVRFNPLFIHSSVGLGKTHLLQAIALA 224 Query: 88 SRSTRFSNIAKSLDSILIDTRKPVLLED------------IDLLDFNDTQLF-------- 127 + + + L + R + D IDLL +D Q Sbjct: 225 ALQSARAPRVVYLTAEYFMWRFATAIRDNDALSLKESLRNIDLLIIDDMQFLQGKSIQHE 284 Query: 128 --HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 H++N + +++ A P + SRL+ +++ PD + +++ + Sbjct: 285 FCHLLNMLLDSAKQVVVAADRAPWELESLDSRVRSRLQGGVAIEMEGPDYEMRLEMLKRR 344 Query: 186 F-ADRQIFIDKKLAAYIVQRMERSLVF 211 A RQ ++ I+ + R++ Sbjct: 345 LEAARQDDASLEIPLEILSHVARNVTA 371 >gi|260567348|ref|ZP_05837818.1| chromosomal replication initiation protein [Brucella suis bv. 4 str. 40] gi|260156866|gb|EEW91946.1| chromosomal replication initiation protein [Brucella suis bv. 4 str. 40] Length = 527 Score = 62.9 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 29/206 (14%), Positives = 70/206 (33%), Gaps = 30/206 (14%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCL------- 80 P + D + ++ A+ + S + + G GK+ L Sbjct: 182 PLDPRYTFDTFVDGASNRVALAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 241 Query: 81 --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124 A + + + N A S L D ++++D+ L Sbjct: 242 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 300 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + H++N++ +++ A P + SRL+ ++++ PD + +++ + Sbjct: 301 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRR 360 Query: 185 MFADRQIF-IDKKLAAYIVQRMERSL 209 A Q + I+ + R++ Sbjct: 361 RLASAQCEDASLDIGEEILAHVARTV 386 >gi|14195656|sp|P35890|DNAA_RHIME RecName: Full=Chromosomal replication initiator protein DnaA Length = 480 Score = 62.5 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 33/207 (15%), Positives = 69/207 (33%), Gaps = 28/207 (13%) Query: 33 PRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRV--VILVGPSGSGKSCLANIWSDK 87 P D + S+ A+ I + R + + G GK+ L + Sbjct: 138 PLDQRYGFDSFVEGSSNRVALAAARTIAEAGAGAVRFNPLFIHSSVGLGKTHLLQAIALA 197 Query: 88 SRSTRFSNIAKSLDSILIDTRKPVLLED------------IDLLDFNDTQLF-------- 127 + + + L + R + D IDLL +D Q Sbjct: 198 ALQSARAPRVVYLTAEYFMWRFATAIRDNDALSLKESLRNIDLLIIDDMQFLQGKSIQHE 257 Query: 128 --HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 H++N + +++ A P + SRL+ +++ PD + +++ + Sbjct: 258 FCHLLNMLLDSAKQVVVAADRAPWELESLDSRVRSRLQGGVAIEMEGPDYEMRLEMLKRR 317 Query: 186 F-ADRQIFIDKKLAAYIVQRMERSLVF 211 A RQ ++ I+ + R++ Sbjct: 318 LEAARQDDASLEIPLEILSHVARNVTA 344 >gi|86169589|gb|ABC87034.1| chromosomal replication initiation protein [Leuconostoc mesenteroides subsp. cremoris] Length = 246 Score = 62.5 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 25/143 (17%), Positives = 55/143 (38%), Gaps = 11/143 (7%) Query: 107 TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 + +L++DI + + F+ N + + ++MT+ P L SR + Sbjct: 48 SVDLLLVDDIQFWSGKEKVQEEFFNTFNVLTKNGKQIVMTSDKLPTEIVDLQTRLTSRFE 107 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---RSLVFAEKLVDKMD 220 A ++ I PD ++ + + I + I ++++ RSL A + Sbjct: 108 AGIMMDIQKPDLPTRVAILQNLSESDGLDIPNDVLELIAEKIDSNVRSLEGAFHKFE--- 164 Query: 221 NLALS-RGMGITRSLAAEVLKET 242 +L T+ A ++L + Sbjct: 165 -ASLRYMNKPATKETAQQILGDL 186 >gi|224368958|ref|YP_002603122.1| DnaA [Desulfobacterium autotrophicum HRM2] gi|223691675|gb|ACN14958.1| DnaA [Desulfobacterium autotrophicum HRM2] Length = 469 Score = 62.5 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 42/261 (16%), Positives = 85/261 (32%), Gaps = 36/261 (13%) Query: 20 QPKNKEEQLFFS-FPRCLGISR--------DDLLVHSAIEQAV-RLIDSWPSWP--SRVV 67 + ++ Q+ R D +V + A + + + + Sbjct: 108 RRPSRPMQMALPGLNIRSDSGRMLKKGYTFDRFVVGDNSDFAYSAALSLAQTSSVNNGAI 167 Query: 68 ILVGPSGSGKSCLANIWSDKSRSTRFSN-----IAKSLDSILIDTRK------------- 109 L+ +G GKS L+ S FS+ A+ + ++ + K Sbjct: 168 YLLSDTGLGKSHLSQAVGHHVISQGFSDKVYYVTAEDFTNEMVSSIKNNTINGFKEKYRR 227 Query: 110 ---PVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 ++LED+ L D +L ++ + + ++ + P L SRL Sbjct: 228 KCDVLILEDVHFLSGKDATQKELAMTLDYLMDAEKKIIFSGCYLPDDIPKMNEQLKSRLT 287 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 V KI P+ K++ I + Y+ Q + ++ E + + + Sbjct: 288 LGMVTKIDPPNFKTRVKILKNKSKYDGFVIPNDVTEYLAQELCDNVRQLESGLMGVARKS 347 Query: 224 LSRGMGITRSLAAEVLKETQQ 244 G I +LA VL + Sbjct: 348 ALLGEKIDINLARGVLSTISR 368 >gi|86169587|gb|ABC87033.1| chromosomal replication initiation protein [Leuconostoc mesenteroides subsp. dextranicum] Length = 237 Score = 62.5 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 25/143 (17%), Positives = 55/143 (38%), Gaps = 11/143 (7%) Query: 107 TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 + +L++DI + + F+ N + + ++MT+ P L SR + Sbjct: 42 SVDLLLVDDIQFWSGKEKVQEEFFNTFNVLTKNGKQIVMTSDKLPTEIVDLQTRLTSRFE 101 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---RSLVFAEKLVDKMD 220 A ++ I PD ++ + + I + I ++++ RSL A + Sbjct: 102 AGIMMDIQKPDLPTRVAILQNLSESDGLDIPNDVLELIAEKIDSNVRSLEGAFHKFE--- 158 Query: 221 NLALS-RGMGITRSLAAEVLKET 242 +L T+ A ++L + Sbjct: 159 -ASLRYMNKPATKETAQQILGDL 180 >gi|86169591|gb|ABC87035.1| chromosomal replication initiation protein [Leuconostoc citreum] Length = 225 Score = 62.5 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 25/143 (17%), Positives = 54/143 (37%), Gaps = 11/143 (7%) Query: 107 TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 T +L++DI + + F+ N + + ++MT+ P DL SRL Sbjct: 36 TVDLLLIDDIQFWSGKEKVQEEFFNTFNVLTKTGKQIIMTSDKLPTEIV----DLQSRLT 91 Query: 164 ----AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 A + I PD ++ + + I + I +++ ++ E + Sbjct: 92 SRFEAGISMDIQKPDLPTRVAILKNLAETDGLTIPNDVLELIADKIDSNIRTLEGTFHRF 151 Query: 220 DNLALSRGMGITRSLAAEVLKET 242 + + R T+ A ++L + Sbjct: 152 EAMLRFRNKPATKETAQQILGDL 174 >gi|86169605|gb|ABC87042.1| chromosomal replication initiation protein [Fructobacillus pseudoficulneus] Length = 227 Score = 62.5 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 52/138 (37%), Gaps = 9/138 (6%) Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 +L++DI + + F+ N++ + ++MT+ +P L L SR +A Sbjct: 44 LLIDDIQFWSGKEKVQEEFFNTFNALTKSGKQIVMTSDRYPTDIPDLLTRLTSRFEAGIT 103 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---RSLVFAEKLVDKMDNLAL 224 I PD ++ + + I ++ I ++++ RSL A + Sbjct: 104 QDIQKPDLPTRVAILRNLQERNDLDIPNEVLELIGEKIDTNVRSLEGAFHKFEAKIRF-- 161 Query: 225 SRGMGITRSLAAEVLKET 242 T A +L E Sbjct: 162 -MNKPATIETAQSILAEL 178 >gi|307709854|ref|ZP_07646303.1| chromosomal replication initiator protein dnaA [Streptococcus mitis SK564] gi|307619403|gb|EFN98530.1| chromosomal replication initiator protein dnaA [Streptococcus mitis SK564] Length = 166 Score = 62.5 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 22/161 (13%), Positives = 53/161 (32%), Gaps = 21/161 (13%) Query: 35 CLGISRDDLLVHSAIEQA----VRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS-- 88 ++ + A + ++ + + G SGSGK+ L +K Sbjct: 7 DNKYQFENFVEKDGNALAKKEALEVVKNLGL-KYSPFYIYGESGSGKTHLLLAIGNKVLE 65 Query: 89 ----------RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND----TQLFHIINSIH 134 + + + + +L++DI +L+ D + F++ NS Sbjct: 66 NNPEKRVKYISAENLLENELEIQKVRGEELDLLLVDDIQVLEEKDDMIQEKFFNLFNSFF 125 Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 + ++++ + P L R K ++ +D Sbjct: 126 GRKTQIVLSGNSEPDQLKNVQSRLIVRFKWGMTACLTSLED 166 >gi|86169597|gb|ABC87038.1| chromosomal replication initiation protein [Leuconostoc pseudomesenteroides KCTC 3652] Length = 233 Score = 62.5 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 25/143 (17%), Positives = 55/143 (38%), Gaps = 11/143 (7%) Query: 107 TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 + +L++DI + + F+ N + + + MT+ +P L SR + Sbjct: 44 SVDLLLVDDIQFWSGKEKVQEEFFNTFNVLTKNGKQIFMTSDKYPTEIVDLQTRLTSRFE 103 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---RSLVFAEKLVDKMD 220 A ++ I PD ++ + + I + I ++++ RSL A + Sbjct: 104 AGIMMDIQKPDLPTRVAILQNLSESDGLTIPNDVLELIAEKIDSNVRSLEGAFHKFE--- 160 Query: 221 NLALS-RGMGITRSLAAEVLKET 242 +L T+ A ++L + Sbjct: 161 -ASLGYMNKPATKETAQQILGDL 182 >gi|167946699|ref|ZP_02533773.1| DNA replication initiation factor [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 60 Score = 62.5 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 29/55 (52%) Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 A R + + ++A +++QR+ R + ++++D +L+ +T E+LK Sbjct: 5 AAKRGLDLKPEIAQFLLQRIPRDTRSILQRLEQLDQASLAAQRRLTIPFVREILK 59 >gi|260222992|emb|CBA33111.1| hypothetical protein Csp_B17410 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 63 Score = 62.1 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 27/54 (50%) Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 R +F+ ++ +++ R R L +L+D MD AL IT L +L+ T Sbjct: 10 RGVFLGDEVMDFMLNRFSRDLGSLMELLDLMDGYALQTQRAITIPLIKSMLENT 63 >gi|265983181|ref|ZP_06095916.1| chromosomal replication initiator protein dnaA [Brucella sp. 83/13] gi|264661773|gb|EEZ32034.1| chromosomal replication initiator protein dnaA [Brucella sp. 83/13] Length = 494 Score = 62.1 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 29/206 (14%), Positives = 70/206 (33%), Gaps = 30/206 (14%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCL------- 80 P + D + ++ A+ + S + + G GK+ L Sbjct: 149 PLDPRYTFDTFVDGASNRVALAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 208 Query: 81 --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124 A + + + N A S L D ++++D+ L Sbjct: 209 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 267 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + H++N++ +++ A P + SRL+ ++++ PD + +++ + Sbjct: 268 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRR 327 Query: 185 MFADRQIF-IDKKLAAYIVQRMERSL 209 A Q + I+ + R++ Sbjct: 328 RLASAQCEDASLDIGEEILAHVARTV 353 >gi|62288992|ref|YP_220785.1| chromosomal replication initiation protein [Brucella abortus bv. 1 str. 9-941] gi|82698933|ref|YP_413507.1| chromosomal replication initiation protein [Brucella melitensis biovar Abortus 2308] gi|148559145|ref|YP_001258050.1| chromosomal replication initiation protein [Brucella ovis ATCC 25840] gi|256368466|ref|YP_003105972.1| chromosomal replication initiation protein [Brucella microti CCM 4915] gi|261316660|ref|ZP_05955857.1| chromosomal replication initiator protein dnaA [Brucella pinnipedialis B2/94] gi|261324123|ref|ZP_05963320.1| chromosomal replication initiator protein dnaA [Brucella neotomae 5K33] gi|261751325|ref|ZP_05995034.1| chromosomal replication initiator protein dnaA [Brucella suis bv. 5 str. 513] gi|265987732|ref|ZP_06100289.1| chromosomal replication initiator protein dnaA [Brucella pinnipedialis M292/94/1] gi|265992206|ref|ZP_06104763.1| chromosomal replication initiator protein dnaA [Brucella melitensis bv. 1 str. Rev.1] gi|265993946|ref|ZP_06106503.1| chromosomal replication initiator protein dnaA [Brucella melitensis bv. 3 str. Ether] gi|38257710|sp|Q8YED5|DNAA_BRUME RecName: Full=Chromosomal replication initiator protein DnaA gi|71151794|sp|Q57G10|DNAA_BRUAB RecName: Full=Chromosomal replication initiator protein DnaA gi|62195124|gb|AAX73424.1| DnaA, chromosomal replication initiator protein [Brucella abortus bv. 1 str. 9-941] gi|82615034|emb|CAJ09955.1| ATP/GTP-binding site motif A (P-loop):Bacterial chromosomal replication initiator protein, DnaA:AAA ATPase:Neutral zinc metal [Brucella melitensis biovar Abortus 2308] gi|148370402|gb|ABQ60381.1| chromosomal replication initiator protein DnaA [Brucella ovis ATCC 25840] gi|255998624|gb|ACU47023.1| chromosomal replication initiation protein [Brucella microti CCM 4915] gi|261295883|gb|EEX99379.1| chromosomal replication initiator protein dnaA [Brucella pinnipedialis B2/94] gi|261300103|gb|EEY03600.1| chromosomal replication initiator protein dnaA [Brucella neotomae 5K33] gi|261741078|gb|EEY29004.1| chromosomal replication initiator protein dnaA [Brucella suis bv. 5 str. 513] gi|262764927|gb|EEZ10848.1| chromosomal replication initiator protein dnaA [Brucella melitensis bv. 3 str. Ether] gi|263003272|gb|EEZ15565.1| chromosomal replication initiator protein dnaA [Brucella melitensis bv. 1 str. Rev.1] gi|264659929|gb|EEZ30190.1| chromosomal replication initiator protein dnaA [Brucella pinnipedialis M292/94/1] Length = 496 Score = 62.1 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 29/206 (14%), Positives = 70/206 (33%), Gaps = 30/206 (14%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCL------- 80 P + D + ++ A+ + S + + G GK+ L Sbjct: 151 PLDPRYTFDTFVDGASNRVALAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 210 Query: 81 --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124 A + + + N A S L D ++++D+ L Sbjct: 211 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 269 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + H++N++ +++ A P + SRL+ ++++ PD + +++ + Sbjct: 270 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRR 329 Query: 185 MFADRQIF-IDKKLAAYIVQRMERSL 209 A Q + I+ + R++ Sbjct: 330 RLASAQCEDASLDIGEEILAHVARTV 355 >gi|260759080|ref|ZP_05871428.1| chromosomal replication initiator protein dnaA [Brucella abortus bv. 4 str. 292] gi|260669398|gb|EEX56338.1| chromosomal replication initiator protein dnaA [Brucella abortus bv. 4 str. 292] Length = 494 Score = 62.1 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 29/206 (14%), Positives = 70/206 (33%), Gaps = 30/206 (14%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCL------- 80 P + D + ++ A+ + S + + G GK+ L Sbjct: 149 PLDPRYTFDTFVDGASNRVALAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 208 Query: 81 --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124 A + + + N A S L D ++++D+ L Sbjct: 209 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 267 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + H++N++ +++ A P + SRL+ ++++ PD + +++ + Sbjct: 268 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRR 327 Query: 185 MFADRQIF-IDKKLAAYIVQRMERSL 209 A Q + I+ + R++ Sbjct: 328 RLASAQCEDASLDIGEEILAHVARTV 353 >gi|86169593|gb|ABC87036.1| chromosomal replication initiation protein [Leuconostoc citreum] Length = 219 Score = 62.1 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 25/143 (17%), Positives = 54/143 (37%), Gaps = 11/143 (7%) Query: 107 TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 T +L++DI + + F+ N + + ++MT+ P DL SRL Sbjct: 30 TVDLLLIDDIQFWSGKEKVQEEFFNTFNVLTKTGKQIIMTSDKLPTEIV----DLQSRLT 85 Query: 164 ----AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 A + I PD ++ + + I + I +++ ++ E + Sbjct: 86 SRFEAGISMDIQKPDLPTRVAILKNLAETDGLTIPNDVLELIADKIDSNIRTLEGTFHRF 145 Query: 220 DNLALSRGMGITRSLAAEVLKET 242 + + R T+ A ++L + Sbjct: 146 EAMLRFRNKPATKETAQQILGDL 168 >gi|91200409|emb|CAJ73456.1| similar to ATPase related to the helicase subunit of the Holliday junction resolvase [Candidatus Kuenenia stuttgartiensis] Length = 478 Score = 62.1 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 41/202 (20%), Positives = 75/202 (37%), Gaps = 37/202 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124 +I GP G GK+ LA I ++ + + A + + V+ E + L FN T Sbjct: 88 LIFWGPPGVGKTTLALIIANAMNAHFITFSAVLSG---VKEIRAVIEEAKEQLKFNGKRT 144 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + + L+ A T S+ V P L SR V+ + Sbjct: 145 VLFVDEIHRFNKAQQDSFLHHVEDGTITLIGATTENPSFEVNSP-LLSR---CKVLVLEP 200 Query: 173 PDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 + +++ +DR +I I + + +I E S A ++ ++ + Sbjct: 201 LRKSHITAILLNALSDRESGLGGQKIEIPQDVIDFIA---EFSHGEARAALNTLETAIML 257 Query: 226 RG------MGITRSLAAEVLKE 241 +T +A E ++ Sbjct: 258 VRPNEKDIRPVTMEIAMEAMQR 279 >gi|260755857|ref|ZP_05868205.1| chromosomal replication initiator protein dnaA [Brucella abortus bv. 6 str. 870] gi|260760806|ref|ZP_05873149.1| chromosomal replication initiator protein dnaA [Brucella abortus bv. 2 str. 86/8/59] gi|260884882|ref|ZP_05896496.1| chromosomal replication initiator protein dnaA [Brucella abortus bv. 9 str. C68] gi|261314779|ref|ZP_05953976.1| chromosomal replication initiator protein dnaA [Brucella pinnipedialis M163/99/10] gi|260671238|gb|EEX58059.1| chromosomal replication initiator protein dnaA [Brucella abortus bv. 2 str. 86/8/59] gi|260675965|gb|EEX62786.1| chromosomal replication initiator protein dnaA [Brucella abortus bv. 6 str. 870] gi|260874410|gb|EEX81479.1| chromosomal replication initiator protein dnaA [Brucella abortus bv. 9 str. C68] gi|261303805|gb|EEY07302.1| chromosomal replication initiator protein dnaA [Brucella pinnipedialis M163/99/10] Length = 494 Score = 62.1 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 29/206 (14%), Positives = 70/206 (33%), Gaps = 30/206 (14%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCL------- 80 P + D + ++ A+ + S + + G GK+ L Sbjct: 149 PLDPRYTFDTFVDGASNRVALAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 208 Query: 81 --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124 A + + + N A S L D ++++D+ L Sbjct: 209 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 267 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + H++N++ +++ A P + SRL+ ++++ PD + +++ + Sbjct: 268 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRR 327 Query: 185 MFADRQIF-IDKKLAAYIVQRMERSL 209 A Q + I+ + R++ Sbjct: 328 RLASAQCEDASLDIGEEILAHVARTV 353 >gi|259235525|gb|ACW20309.1| replication initiator DnaA [Francisella cf. novicida 3523] Length = 191 Score = 62.1 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 22/137 (16%), Positives = 46/137 (33%), Gaps = 26/137 (18%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN 82 E+ F P D +V A + A P ++ + + G SG GK+ L Sbjct: 55 EEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLHNPLFIYGGSGLGKTHLMQ 114 Query: 83 IWSDKSRSTRFSNIAKSLDSI--------------------LIDTRKPVLLEDIDLLDFN 122 + +R + +S + + +L++DI + Sbjct: 115 AIGNHAREVNPNAKIIYTNSEQFIKDYVNSIRLQDQDEFQRVYRSADILLIDDIQFIAGK 174 Query: 123 D---TQLFHIINSIHQY 136 + + FH N++++ Sbjct: 175 EGTAQEFFHTFNALYEN 191 >gi|23500917|ref|NP_697044.1| chromosomal replication initiation protein [Brucella suis 1330] gi|261755890|ref|ZP_05999599.1| chromosomal replication initiator protein dnaA [Brucella suis bv. 3 str. 686] gi|38257642|sp|Q8G3E7|DNAA_BRUSU RecName: Full=Chromosomal replication initiator protein DnaA gi|23346770|gb|AAN28959.1| chromosomal replication initiator protein DnaA [Brucella suis 1330] gi|261745643|gb|EEY33569.1| chromosomal replication initiator protein dnaA [Brucella suis bv. 3 str. 686] Length = 496 Score = 62.1 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 29/206 (14%), Positives = 70/206 (33%), Gaps = 30/206 (14%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCL------- 80 P + D + ++ A+ + S + + G GK+ L Sbjct: 151 PLDPRYTFDTFVDGASNRVALAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 210 Query: 81 --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124 A + + + N A S L D ++++D+ L Sbjct: 211 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 269 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + H++N++ +++ A P + SRL+ ++++ PD + +++ + Sbjct: 270 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRR 329 Query: 185 MFADRQIF-IDKKLAAYIVQRMERSL 209 A Q + I+ + R++ Sbjct: 330 RLASAQCEDASLDIGEEILAHVARTV 355 >gi|13357559|ref|NP_077831.1| chromosomal replication initiator protein [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762315|ref|YP_001752081.1| chromosomal replication initiator protein DnaA [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171920143|ref|ZP_02690831.2| chromosomal replication initiator protein DnaA [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|183508477|ref|ZP_02689676.2| chromosomal replication initiator protein DnaA [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701846|ref|ZP_02553448.2| chromosomal replication initiator protein DnaA [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|12230044|sp|Q9PRE2|DNAA_UREPA RecName: Full=Chromosomal replication initiator protein DnaA gi|189083284|sp|B1AHY7|DNAA_UREP2 RecName: Full=Chromosomal replication initiator protein DnaA gi|11356754|pir||B82945 chromosomal replication initiator protein UU001 [imported] - Ureaplasma urealyticum gi|6898947|gb|AAF30408.1|AE002100_1 chromosomal replication initiator protein [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827892|gb|ACA33154.1| chromosomal replication initiator protein DnaA [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171902510|gb|EDT48799.1| chromosomal replication initiator protein DnaA [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|182675896|gb|EDT87801.1| chromosomal replication initiator protein DnaA [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701140|gb|EDU19422.1| chromosomal replication initiator protein DnaA [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 457 Score = 62.1 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 69/198 (34%), Gaps = 32/198 (16%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPS------RVVILVGPSGSGKSCLANIWSDKSR- 89 + ++L++ + ++A++ I++ S + L G G GK+ + ++ Sbjct: 113 RYNFNNLVISNFNQKAIKAIENLFSNNYDNSSMCNPLFLFGKVGVGKTHIVAAAGNRFAN 172 Query: 90 ---------------------STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQ 125 ++ I + ++ EDI + D Sbjct: 173 SNPNLKIYYYEGQDFFRKFCSASLKGTSYVEEFKKEIASADLLIFEDIQNIQSRDSTAEL 232 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 F+I N I +++T+ P + SRL + KIS PD + K+I Sbjct: 233 FFNIFNDIKLNGGKIILTSDRTPNELNGFHNRIISRLASGLQCKISQPDKNEAIKIINNW 292 Query: 186 FA-DRQIFIDKKLAAYIV 202 F ++ I + YI Sbjct: 293 FEFKKKYQITDEAKEYIA 310 >gi|240047136|ref|YP_002960524.1| chromosomal replication initiation protein [Mycoplasma conjunctivae HRC/581] gi|239984708|emb|CAT04680.1| Chromosomal replication initiator protein dnaA [Mycoplasma conjunctivae] Length = 470 Score = 62.1 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 64/181 (35%), Gaps = 28/181 (15%) Query: 67 VILVGPSGSGKSCLANI----WSDKSRSTRFSNIAKSLDSIL------------------ 104 + + G SG GK+ + + K + + N K + Sbjct: 156 LFIYGASGVGKTHFLSALGNSFIKKDKKVFYINDYKFTSIVTSWLRDKNEYSKINQFIEW 215 Query: 105 IDTRKPVLLEDIDLLDFNDTQL---FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161 + T ++++DI L F IIN + D +++ + T P G L +R Sbjct: 216 LSTIDVLIIDDIQGFGNKTRTLSILFQIINKFIEEDKQIVIASDTPPNILGGFEDRLITR 275 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIF---IDKKLAAYIVQRMERSLVFAEKLVDK 218 K+ V++++ P + K+ + + + ++ + S+ E + K Sbjct: 276 FKSGLVIEMNKPTKEDFVKIFKFKIEEEGLDKYYWSPEAIDFLSRHFHNSIRDMEGALKK 335 Query: 219 M 219 + Sbjct: 336 I 336 >gi|12045329|ref|NP_073140.1| chromosomal replication initiation protein [Mycoplasma genitalium G37] gi|1352276|sp|P35888|DNAA_MYCGE RecName: Full=Chromosomal replication initiator protein DnaA gi|3845066|gb|AAC72490.1| chromosomal replication initiator protein DnaA [Mycoplasma genitalium G37] gi|166079050|gb|ABY79668.1| chromosomal replication initiator protein DnaA [synthetic Mycoplasma genitalium JCVI-1.0] Length = 437 Score = 62.1 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 69/199 (34%), Gaps = 32/199 (16%) Query: 1 MNLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRL---ID 57 +N + E FF + + ++ Q + + + ++ ++A + Sbjct: 72 VNFVNEQ-DFFFNLAKLEENSRDTLYQ---NSGLSKNYTFQNFVISEGNKRAYEAGVRLA 127 Query: 58 SWPSWPSRVVILVGPSGSGKSCLANIWS---------DKSRSTRFSNIAKSLDSILIDTR 108 + + G +G GK+ L + + S+ A+ + Sbjct: 128 ETQDNEFSPLFIYGETGLGKTHLLQAIGNEKFRNFPNARVKYVVSSDFAQEVVDAFYQRD 187 Query: 109 KPVL-----LEDIDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPVSWG 152 K + E++DL+ +DTQ LF+I N++ +++ + P Sbjct: 188 KGIEKLKKNYENLDLVLIDDTQIFGRKEKTLEILFNIFNNLVLNKKQIVLVSDKAPDELI 247 Query: 153 VCLPDLCSRLKAATVVKIS 171 + SR K+ ++KI Sbjct: 248 DIDARMISRFKSGLLLKIE 266 >gi|218506736|ref|ZP_03504614.1| chromosomal replication initiation protein [Rhizobium etli Brasil 5] Length = 276 Score = 62.1 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 52/125 (41%), Gaps = 3/125 (2%) Query: 90 STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DTQLFHIINSIHQYDSSLLMTARTF 147 +T + + ++++D+ L + H++N + +++ A Sbjct: 6 ATAIRDNDALTLKDSLRNIDLLIIDDMQFLQGKMIQHEFCHLLNMLLDSAKQVVVAADRA 65 Query: 148 PVSWGVCLPDLCSRLKAATVVKISLPD-DDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206 P P + SRL+ +++ PD + LE + ++ A RQ ++ A ++Q + Sbjct: 66 PWELESLDPRVRSRLQGGVAIELDAPDYEMRLEILKRRLAAARQEDPSLEIPADLLQHVA 125 Query: 207 RSLVF 211 R++ Sbjct: 126 RNITA 130 >gi|307941558|ref|ZP_07656913.1| chromosomal replication initiator protein DnaA [Roseibium sp. TrichSKD4] gi|307775166|gb|EFO34372.1| chromosomal replication initiator protein DnaA [Roseibium sp. TrichSKD4] Length = 487 Score = 61.7 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 36/250 (14%), Positives = 80/250 (32%), Gaps = 32/250 (12%) Query: 28 LFFSF----PRCLGISRDDLLVHSAIEQAVRLID---SWPSWPSRVVILVGPSGSGKSCL 80 L F + D + ++ A + + S ++ + G GKS L Sbjct: 139 LPLQFLQGAAVNPNQTFDTFVEGNSNGLAFSAVRQMANDQSSTLDLLFIHSGIGIGKSHL 198 Query: 81 ANIWSDKSRSTRFSNIAKSLDSILIDTRKPV----------LLEDIDLLDF--------- 121 + + ++R+ + + + + + L+ +DLL Sbjct: 199 LHAAAAEARAAGRKVLYVTAEYFMYHLVPALRTRSFTMVKQTLDSVDLLLIDDIQLLHGK 258 Query: 122 -NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 + + + + + +++ A P L R V I PD + Sbjct: 259 QHQQEFCQTLRMLLESPKQVIVAADRPPEQLATLDDTLRKRFADGVVAGIQHPDYLLRKN 318 Query: 181 VIVKM--FADR---QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235 ++ K A R I + + +I + + S E V+++ IT+ LA Sbjct: 319 IVEKRVSIARRHYPSFDIPEAVVDHIARNVTSSARDLEGAVNRLIAHNQLTNQPITQELA 378 Query: 236 AEVLKETQQC 245 + L + + Sbjct: 379 DKTLHDLVKP 388 >gi|269122801|ref|YP_003305378.1| Chromosomal replication initiator DnaA [Streptobacillus moniliformis DSM 12112] gi|268314127|gb|ACZ00501.1| Chromosomal replication initiator DnaA [Streptobacillus moniliformis DSM 12112] Length = 441 Score = 61.7 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 35/237 (14%), Positives = 90/237 (37%), Gaps = 34/237 (14%) Query: 37 GISRDDLLVHSAIEQAV----RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK----- 87 + ++ ++ A ++D + +++ G SG GK+ LA ++ Sbjct: 104 KFTFNNYVIGDNNLFAYKLGMAILDG--KLSNSPLMIYGDSGLGKTHLAQAIGNEMIEKN 161 Query: 88 -SRSTRFSNIAKSLDSILIDTRKPVLL------EDIDLLDFNDTQLF------------- 127 ++ + + ++ + + D+D+L +D Q F Sbjct: 162 PESKVFYTTSTEFSNELIKSFSERTTISFKDKYADLDMLIVDDIQFFENIFGKGDDKIQK 221 Query: 128 ---HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + N++H + +++ + +P L SRL + +V++ +PD +I Sbjct: 222 EFYNAFNTLHMANKPIILISDKYPEELTNVEARLISRLVSGALVELKMPDKTSRISIIKT 281 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + I +D++L +I +E ++ E V+ + A + + + + L + Sbjct: 282 IITKENIPMDQELMYFIADELETNIRELEGFVNTIVARAKLMNEVVNKKMIIDELNK 338 >gi|296125059|ref|YP_003632311.1| chromosomal replication initiator protein DnaA [Brachyspira murdochii DSM 12563] gi|296016875|gb|ADG70112.1| chromosomal replication initiator protein DnaA [Brachyspira murdochii DSM 12563] Length = 459 Score = 61.7 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 28/220 (12%), Positives = 65/220 (29%), Gaps = 28/220 (12%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRFS 94 D+ + + S P + + G G GK+ L + + Sbjct: 126 FRFDNFIQGNNNRYVFEAAKYVSSNPGKEYNPFYVYGSVGIGKTHLLQAIGNSYLEANPN 185 Query: 95 NIAKSLDSILIDTRKPVLLED-----------------------IDLLDFNDTQLFHIIN 131 +D L++ ++ +LF I Sbjct: 186 AKVLYIDGSGFRDEYVSCLQNKKPEVFKRKYKSLDMLLLDDLQLLESAQETSKELFEIFQ 245 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 ++ ++ + P L +R + + ++ I P + +I + D Sbjct: 246 ALDSAAKQMVFVSDKPPKELRNIESRLKNRFEKSLILSIEPPQYETRLAIIERKLFDLHT 305 Query: 192 FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231 ID+++ Y+ + + + E + L++ M IT Sbjct: 306 SIDEEVMKYMAENITTDVRKIEGAIRA--YLSVRDLMKIT 343 >gi|305663892|ref|YP_003860180.1| AAA ATPase central domain protein [Ignisphaera aggregans DSM 17230] gi|304378461|gb|ADM28300.1| AAA ATPase central domain protein [Ignisphaera aggregans DSM 17230] Length = 480 Score = 61.7 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 40/198 (20%), Positives = 77/198 (38%), Gaps = 33/198 (16%) Query: 52 AVRLIDSWPSWPSRVVILVGPSGSGKSCL----------------ANIWSDKSRSTRFSN 95 + + WP+ + ++L GP G GK+ L A+ + +S R + Sbjct: 32 VLEWLKKWPNVQRKALLLYGPPGCGKTSLVEAIANEFKYELIEMNASDFRRRSDIERIAI 91 Query: 96 IAKSLDSILIDTRKPVLLEDIDLLDF--NDTQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 A S+ SI TRK +LL+++D + ++ + I + + ++MTA Sbjct: 92 RASSMQSIFGKTRKIILLDEVDGISAKEDEGGIEAIKQLVEKTSVPVIMTANNP------ 145 Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213 P L + A +V+ + V+ K+ + D++ YI++R E L A Sbjct: 146 YDPSLRVLREIAEMVQFKKLSKSDMRMVLNKICRAENLRCDEEAIDYIIERAEGDLRAAI 205 Query: 214 KLVDK---------MDNL 222 + +D Sbjct: 206 NDLQAVGEGFGEVTLDRA 223 >gi|225626552|ref|ZP_03784591.1| chromosomal replication initiator protein DnaA [Brucella ceti str. Cudo] gi|225618209|gb|EEH15252.1| chromosomal replication initiator protein DnaA [Brucella ceti str. Cudo] Length = 566 Score = 61.7 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 29/206 (14%), Positives = 70/206 (33%), Gaps = 30/206 (14%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCL------- 80 P + D + ++ A+ + S + + G GK+ L Sbjct: 221 PLDPRYTFDTFVDGASNHVALAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 280 Query: 81 --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124 A + + + N A S L D ++++D+ L Sbjct: 281 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 339 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + H++N++ +++ A P + SRL+ ++++ PD + +++ + Sbjct: 340 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRR 399 Query: 185 MFADRQIF-IDKKLAAYIVQRMERSL 209 A Q + I+ + R++ Sbjct: 400 RLASAQCEDASLDIGEEILAHVARTV 425 >gi|85859697|ref|YP_461899.1| recombination factor protein RarA [Syntrophus aciditrophicus SB] gi|85722788|gb|ABC77731.1| ATPase, AAA family [Syntrophus aciditrophicus SB] Length = 478 Score = 61.3 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 44/200 (22%), Positives = 84/200 (42%), Gaps = 33/200 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125 VI GP GSGK+ LA I + ++++ F+ + L + + ++E+ + N+ Q Sbjct: 78 VIFWGPPGSGKTTLARIVAGETKAY-FAAFSAVLSGVKELRK---VVEEAEARWQNNRQK 133 Query: 126 --LF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 LF H N + L+ A T S+ V P L SR V+ + Sbjct: 134 TVLFVDEIHRFNKAQQDAFLPHVESGLITLIGATTENPSFEVIAP-LLSR---CRVLVLK 189 Query: 172 LPDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRME---RSLVFAEKLVDKMDN 221 D+ L +++ ++ DR + +D+ AY+V + R+ + + + V + Sbjct: 190 PFSDEDLVRILNRVLRDRRRGLGNLGLELDQDALAYLVHTADGDARTALNSLEAVASLLA 249 Query: 222 LALSRGMGITRSLAAEVLKE 241 + I+R E L++ Sbjct: 250 AGEGQSSRISRVQVEEALQK 269 >gi|218961662|ref|YP_001741437.1| ATPase, AAA family [Candidatus Cloacamonas acidaminovorans] gi|167730319|emb|CAO81231.1| ATPase, AAA family [Candidatus Cloacamonas acidaminovorans] Length = 437 Score = 61.3 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 72/167 (43%), Gaps = 24/167 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 IL GP GSGK+ +A I S RFS + S+ + ++ + + + Sbjct: 59 FILWGPPGSGKTTIARIIEKNSGYNFIRFSAVLASISDVKAVMKEA---DYLHRTQNKRS 115 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + + +L+ A T S+ V +P L SR TV + Sbjct: 116 ILFIDEIHRFNKSQQDAFLPYVESGAIILIGATTENPSFEV-IPALLSR---CTVFVLEA 171 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 ++ L+ ++ + FA+ ++ D+++ ++ Q A ++++ + Sbjct: 172 LSENDLKIILKRGFAELKLEEDEEIINWMAQNAG---GDARRVLNDL 215 >gi|256158687|ref|ZP_05456570.1| chromosomal replication initiation protein [Brucella ceti M490/95/1] Length = 546 Score = 61.3 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 29/206 (14%), Positives = 70/206 (33%), Gaps = 30/206 (14%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCL------- 80 P + D + ++ A+ + S + + G GK+ L Sbjct: 201 PLDPRYTFDTFVDGASNHVALAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 260 Query: 81 --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124 A + + + N A S L D ++++D+ L Sbjct: 261 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 319 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + H++N++ +++ A P + SRL+ ++++ PD + +++ + Sbjct: 320 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRR 379 Query: 185 MFADRQIF-IDKKLAAYIVQRMERSL 209 A Q + I+ + R++ Sbjct: 380 RLASAQCEDASLDIGEEILAHVARTV 405 >gi|256254092|ref|ZP_05459628.1| chromosomal replication initiation protein [Brucella ceti B1/94] Length = 540 Score = 61.3 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 29/206 (14%), Positives = 70/206 (33%), Gaps = 30/206 (14%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCL------- 80 P + D + ++ A+ + S + + G GK+ L Sbjct: 195 PLDPRYTFDTFVDGASNHVALAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 254 Query: 81 --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124 A + + + N A S L D ++++D+ L Sbjct: 255 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 313 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + H++N++ +++ A P + SRL+ ++++ PD + +++ + Sbjct: 314 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRR 373 Query: 185 MFADRQIF-IDKKLAAYIVQRMERSL 209 A Q + I+ + R++ Sbjct: 374 RLASAQCEDASLDIGEEILAHVARTV 399 >gi|254713413|ref|ZP_05175224.1| chromosomal replication initiation protein [Brucella ceti M644/93/1] gi|254716230|ref|ZP_05178041.1| chromosomal replication initiation protein [Brucella ceti M13/05/1] Length = 540 Score = 61.3 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 32/206 (15%), Positives = 71/206 (34%), Gaps = 30/206 (14%) Query: 33 PRCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRV--VILVGPSGSGKSCL------- 80 P + D + ++ A R I S R + + G GK+ L Sbjct: 195 PLDPRYTFDTFVDGASNRVVLAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 254 Query: 81 --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124 A + + + N A S L D ++++D+ L Sbjct: 255 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 313 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + H++N++ +++ A P + SRL+ ++++ PD + +++ + Sbjct: 314 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRR 373 Query: 185 MFADRQIF-IDKKLAAYIVQRMERSL 209 A Q + I+ + R++ Sbjct: 374 RLASAQCEDASLDIGEEILAHVARTV 399 >gi|317050664|ref|YP_004111780.1| AAA ATPase central domain-containing protein [Desulfurispirillum indicum S5] gi|316945748|gb|ADU65224.1| AAA ATPase central domain protein [Desulfurispirillum indicum S5] Length = 420 Score = 61.3 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 40/179 (22%), Positives = 76/179 (42%), Gaps = 21/179 (11%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 I GP G+GK+ LA+I S +++S + A + + I E + L T L Sbjct: 50 AIFTGPPGTGKTTLAHIISQRTQSHFATLNAVNAGTADIRAICKDAKE-LRLHQGQRTVL 108 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N I + + +L+ A T S+ + P L SR + ++ D Sbjct: 109 FIDEIHRFNKIQQDALLPEVESGNIILIGASTQNPSFALV-PALLSR---TVLFELHALD 164 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA-LSRGMGITR 232 D+ + +++ + A+ + +D + I+ + ++ ++ A L +G ITR Sbjct: 165 DEDMGRLVERGCAELGVTMDDEAREAIMTLCS---GDGRRCLNTIEAAALLCQGNHITR 220 >gi|83944868|ref|ZP_00957234.1| Chromosomal replication initiator protein DnaA [Oceanicaulis alexandrii HTCC2633] gi|83851650|gb|EAP89505.1| Chromosomal replication initiator protein DnaA [Oceanicaulis alexandrii HTCC2633] Length = 478 Score = 61.3 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 29/208 (13%), Positives = 67/208 (32%), Gaps = 28/208 (13%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKS--RSTRFSNIAKSLDSILIDTRKP---------- 110 P V G G GKS L + + R + + + L + Sbjct: 170 PFNPVFFHGDYGVGKSHLLAAIAHSASLSGKRKKVLYLTAEEFLNGFQSALRARDVQPFK 229 Query: 111 --------VLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC 159 +L++D+ + + + + ++ + +++ + P V L Sbjct: 230 DLVRDCDMLLIDDVHFICGKPRTEDEFLQTVTALISAEKQVVLASHCAPSQLSVSDDRLR 289 Query: 160 SRLKAATVVKISLPDDDFLEKVIV-KMFADRQ----IFIDKKLAAYIVQRMERSLVFAEK 214 + L + PD D K++ K+ R + + + + ++ R+ S E Sbjct: 290 NILAGGFNCPLQGPDLDLRRKILDCKIAQARNHCPDLEVPETVRDFLAARVTSSARELEG 349 Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKET 242 +++ + +T E L E Sbjct: 350 VLNNIIVRTAYMNRPVTMETVEEALGEL 377 >gi|322419817|ref|YP_004199040.1| AAA ATPase central domain-containing protein [Geobacter sp. M18] gi|320126204|gb|ADW13764.1| AAA ATPase central domain protein [Geobacter sp. M18] Length = 434 Score = 60.9 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 43/197 (21%), Positives = 78/197 (39%), Gaps = 32/197 (16%) Query: 67 VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I GP GSGK+ LA I + KS FS I + I ++ E+ T Sbjct: 51 LIFWGPPGSGKTTLARIIAGATKSHFIFFSAIMSGIKEIREVVKEA---EETLKYHGRRT 107 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + + ++ A T S+ V P L SR V+ ++ Sbjct: 108 ILFVDEIHRFNKSQQDAFLPYVERGTFTMIGATTENPSFEVIAP-LLSR---CKVLVLNP 163 Query: 173 PDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA-L 224 ++ + +++ DR ++ + A++ E++ A ++ ++ A L Sbjct: 164 LSEEEIRQILQNALTDRERGLGESELTAAPEALAFMA---EQAGGDARVALNTLETAARL 220 Query: 225 SRGMGITRSLAAEVLKE 241 +R IT A E ++ Sbjct: 221 ARDREITLETAREASQK 237 >gi|307596341|ref|YP_003902658.1| AAA ATPase central domain-containing protein [Vulcanisaeta distributa DSM 14429] gi|307551542|gb|ADN51607.1| AAA ATPase central domain protein [Vulcanisaeta distributa DSM 14429] Length = 435 Score = 60.9 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 75/200 (37%), Gaps = 30/200 (15%) Query: 53 VRLIDSWPSW-PSRVVI-LVGPSGSGKSCLANIWSDKSRSTRFSNIAKS----------- 99 + I+ W PS+ + LVGP G+GK+ LA +++ A Sbjct: 30 LDWINDWEKGKPSKKAVMLVGPPGTGKTTLAYALANERGYEVLELNASDVRTGERIRQVM 89 Query: 100 -----LDSILIDTRKPVLLEDIDLLDFNDT--QLFHIINSIHQYDSSLLMTARTFPVSWG 152 + S+ + +L +++D L+ + L I+ I + ++MTA W Sbjct: 90 GGSMKMGSLFGFKGRIILFDEVDGLNVREDRGGLAAIVELIRESTWPIIMTANNP---WD 146 Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 +L A V+++ D+D + ++ ++ I ++ I E S Sbjct: 147 PKFRELR---DEAEVIQLKPLDEDDILTILRRICNAEGIKCEEDALKLIA---ESSGGDV 200 Query: 213 EKLVDKMDNLALSRGMGITR 232 ++ + A +T+ Sbjct: 201 RAAINDL-QAAAEGKKVLTK 219 >gi|114778425|ref|ZP_01453270.1| glucose-inhibited division protein A [Mariprofundus ferrooxydans PV-1] gi|114551269|gb|EAU53827.1| glucose-inhibited division protein A [Mariprofundus ferrooxydans PV-1] Length = 239 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 35/224 (15%), Positives = 75/224 (33%), Gaps = 23/224 (10%) Query: 21 PKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW--PSRVVILVGPSGSGKS 78 P + +L S P D + H +++A D W + L +GK+ Sbjct: 2 PVQSQMRLALSLPERYDYG--DWIRHDGVDEA---CDRMALWCVHGGSLWLRSLDPAGKT 56 Query: 79 CLANIWSDKSRSTRFSNIAKSLDSILI---------DTRKPVLLEDIDLLDFN---DTQL 126 L + +S + ++ D + + D+ L Sbjct: 57 HLLRTLARESDNIALLEVSALSDLPAWQLVEQWMRELEGSSMWMLDVQPGVLAVPVAQAL 116 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP-DDDFLEKVIVKM 185 FH + ++ + R + P+L SRL A ++ P DDD L ++ Sbjct: 117 FHCLERGRDQQRAVTLAWRGDVTALP---PELSSRLLAMEQCVLAPPSDDDALLNILHSS 173 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229 Q I +++ ++ + R L ++ +++ + + Sbjct: 174 AGRLQWEIRQQVLQAMLTYLPRQLDVLIPVLRELERRSFEQHHR 217 >gi|86169609|gb|ABC87044.1| chromosomal replication initiation protein [Weissella hellenica] Length = 231 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 23/161 (14%), Positives = 52/161 (32%), Gaps = 29/161 (18%) Query: 107 TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 + ++++D+ L + + F+ N+I + + +++T+ P L +R Sbjct: 43 STDLLMVDDVQFLAGKEKIQEEFFNTFNAITRENHQIVLTSDKLPKEIPGLEMRLVTRFG 102 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---RSL----------- 209 I+ PD ++ + I + I ++ R L Sbjct: 103 QGYSANITKPDLPTRVAILRNKSDLENLSIPNDVIDEIAAAVDTNVRDLEGVFNQVVGKM 162 Query: 210 ---------VFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 A +++ M+ R IT L E + Sbjct: 163 RFSNVPITVETARTILETMN---FKRQRAITIPLIQEAVAN 200 >gi|238061913|ref|ZP_04606622.1| chromosomal replication initiator protein dnaA [Micromonospora sp. ATCC 39149] gi|237883724|gb|EEP72552.1| chromosomal replication initiator protein dnaA [Micromonospora sp. ATCC 39149] Length = 160 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 48/129 (37%), Gaps = 23/129 (17%) Query: 63 PSRVVILVGPSGSGKSCLANIWSD------KSRSTRFSNIAKSLDSILIDTRK------- 109 + + G SG GK+ L + +RS R+ + + + + R Sbjct: 31 AYNPLFIYGSSGLGKTHLLHAIGHYATTLGNARSVRYVSTEEFTNDFINSVRDDKTSAFQ 90 Query: 110 -------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC 159 +L++DI L+ + + FH N++H + +++T+ P L Sbjct: 91 RRYRDVDILLIDDIQFLENRERTQEEFFHTFNTLHNANKQIVVTSDRSPKQLATLEDRLR 150 Query: 160 SRLKAATVV 168 +R + + Sbjct: 151 TRFEWGLLA 159 >gi|260169591|ref|ZP_05756402.1| chromosomal replication initiation protein [Brucella sp. F5/99] gi|261759117|ref|ZP_06002826.1| chromosomal replication initiation protein [Brucella sp. F5/99] gi|265997193|ref|ZP_06109750.1| chromosomal replication initiator protein dnaA [Brucella ceti M490/95/1] gi|261739101|gb|EEY27097.1| chromosomal replication initiation protein [Brucella sp. F5/99] gi|262551661|gb|EEZ07651.1| chromosomal replication initiator protein dnaA [Brucella ceti M490/95/1] Length = 496 Score = 60.5 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 29/206 (14%), Positives = 70/206 (33%), Gaps = 30/206 (14%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCL------- 80 P + D + ++ A+ + S + + G GK+ L Sbjct: 151 PLDPRYTFDTFVDGASNHVALAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 210 Query: 81 --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124 A + + + N A S L D ++++D+ L Sbjct: 211 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 269 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + H++N++ +++ A P + SRL+ ++++ PD + +++ + Sbjct: 270 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRR 329 Query: 185 MFADRQIF-IDKKLAAYIVQRMERSL 209 A Q + I+ + R++ Sbjct: 330 RLASAQCEDASLDIGEEILAHVARTV 355 >gi|261321147|ref|ZP_05960344.1| chromosomal replication initiator protein dnaA [Brucella ceti M644/93/1] gi|261293837|gb|EEX97333.1| chromosomal replication initiator protein dnaA [Brucella ceti M644/93/1] Length = 496 Score = 60.2 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 32/206 (15%), Positives = 71/206 (34%), Gaps = 30/206 (14%) Query: 33 PRCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRV--VILVGPSGSGKSCL------- 80 P + D + ++ A R I S R + + G GK+ L Sbjct: 151 PLDPRYTFDTFVDGASNRVVLAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 210 Query: 81 --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124 A + + + N A S L D ++++D+ L Sbjct: 211 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 269 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + H++N++ +++ A P + SRL+ ++++ PD + +++ + Sbjct: 270 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRR 329 Query: 185 MFADRQIF-IDKKLAAYIVQRMERSL 209 A Q + I+ + R++ Sbjct: 330 RLASAQCEDASLDIGEEILAHVARTV 355 >gi|261221232|ref|ZP_05935513.1| chromosomal replication initiator protein dnaA [Brucella ceti B1/94] gi|260919816|gb|EEX86469.1| chromosomal replication initiator protein dnaA [Brucella ceti B1/94] Length = 494 Score = 60.2 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 29/206 (14%), Positives = 70/206 (33%), Gaps = 30/206 (14%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV-----VILVGPSGSGKSCL------- 80 P + D + ++ A+ + S + + G GK+ L Sbjct: 149 PLDPRYTFDTFVDGASNHVALAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 208 Query: 81 --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124 A + + + N A S L D ++++D+ L Sbjct: 209 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 267 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + H++N++ +++ A P + SRL+ ++++ PD + +++ + Sbjct: 268 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRR 327 Query: 185 MFADRQIF-IDKKLAAYIVQRMERSL 209 A Q + I+ + R++ Sbjct: 328 RLASAQCEDASLDIGEEILAHVARTV 353 >gi|261218003|ref|ZP_05932284.1| chromosomal replication initiator protein dnaA [Brucella ceti M13/05/1] gi|260923092|gb|EEX89660.1| chromosomal replication initiator protein dnaA [Brucella ceti M13/05/1] Length = 494 Score = 60.2 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 32/206 (15%), Positives = 71/206 (34%), Gaps = 30/206 (14%) Query: 33 PRCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRV--VILVGPSGSGKSCL------- 80 P + D + ++ A R I S R + + G GK+ L Sbjct: 149 PLDPRYTFDTFVDGASNRVVLAAARTIAEAGSSAVRFNPLFIHASVGLGKTHLLQAIAAA 208 Query: 81 --------------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124 A + + + N A S L D ++++D+ L Sbjct: 209 ALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRD-IDLLVIDDMQFLQGKSIQH 267 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + H++N++ +++ A P + SRL+ ++++ PD + +++ + Sbjct: 268 EFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRR 327 Query: 185 MFADRQIF-IDKKLAAYIVQRMERSL 209 A Q + I+ + R++ Sbjct: 328 RLASAQCEDASLDIGEEILAHVARTV 353 >gi|139439857|ref|ZP_01773222.1| Hypothetical protein COLAER_02256 [Collinsella aerofaciens ATCC 25986] gi|133774785|gb|EBA38605.1| Hypothetical protein COLAER_02256 [Collinsella aerofaciens ATCC 25986] Length = 547 Score = 60.2 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 28/207 (13%), Positives = 70/207 (33%), Gaps = 40/207 (19%) Query: 12 VPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV----- 66 VP +Q D + ++ + A R + + Sbjct: 172 VPAEQNTDGA---------PLAANSKFTFENFVYGPENSHAYRSALKFAALADERGTCTS 222 Query: 67 VILVGPSGSGKSCLANIW----SDKSRS--TRFSNIAKSLDSILID-------------- 106 + + G SG GK+ L ++KS +++N LD ++ + Sbjct: 223 LFIYGKSGLGKTHLLLAIKNELAEKSPEIKVKYANSQAYLDDLMTEFDRQKKSNAPIMQA 282 Query: 107 --TRKPVLLEDIDLLDFNDTQL---FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161 ++++DI + + F +++ + + +++ A P + L SR Sbjct: 283 YHGVDVLIIDDIQNIIGKRASVDYFFQLMDEFIRNNKKVVIAADRAPKDLSMD-ERLTSR 341 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFAD 188 A + ++ P + K++ + + + Sbjct: 342 FNAGMLCLVAEPSYEMKYKILQRYYEN 368 >gi|297200939|ref|ZP_06918336.1| chromosomal replication initiator protein DnaA [Streptomyces sviceus ATCC 29083] gi|297147773|gb|EDY60923.2| chromosomal replication initiator protein DnaA [Streptomyces sviceus ATCC 29083] Length = 505 Score = 60.2 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 58/158 (36%), Gaps = 28/158 (17%) Query: 35 CLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS- 90 D ++ ++ A + P+ + + G SG GK+ L + +RS Sbjct: 349 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSL 408 Query: 91 -----TRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFND---TQLFH 128 R+ + + + + R +L++DI L + + FH Sbjct: 409 YPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFH 468 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAA 165 N++H + +++++ P V L D L +R + Sbjct: 469 TFNTLHNANKQIVLSSDRPPKQL-VTLEDRLRNRFEWV 505 >gi|253700393|ref|YP_003021582.1| recombination factor protein RarA [Geobacter sp. M21] gi|251775243|gb|ACT17824.1| AAA ATPase central domain protein [Geobacter sp. M21] Length = 434 Score = 60.2 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 44/194 (22%), Positives = 76/194 (39%), Gaps = 26/194 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRF--SNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I GP GSGK+ LA I ++ + S S I + I ++ ED T Sbjct: 52 LIFWGPPGSGKTTLARIIANATSSHFIFFSAIMSGIKEIREVVKEA---EDTLKYQGKRT 108 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + + ++ A T S+ V P L SR V+ + Sbjct: 109 ILFVDEIHRFNKSQQDAFLPHVERGTFTIIGATTENPSFEVIAP-LLSR---CKVLVLQP 164 Query: 173 PDDDFLEKVIVKMFADRQIFIDK----KLAAYIVQRMERSLVFAEKLVDKMDNLA-LSRG 227 D+ L K++ ADR+ + A + E++ A ++ ++ + L+ Sbjct: 165 LSDEDLLKILEIALADRERGLGDLELGATAEALAFMAEQAAGDARVALNTLETASRLAHH 224 Query: 228 MGITRSLAAEVLKE 241 IT A E +++ Sbjct: 225 GEITLESAREAVQK 238 >gi|261417132|ref|YP_003250815.1| Chromosomal replication initiator DnaA [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373588|gb|ACX76333.1| Chromosomal replication initiator DnaA [Fibrobacter succinogenes subsp. succinogenes S85] Length = 487 Score = 59.8 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 34/231 (14%), Positives = 65/231 (28%), Gaps = 56/231 (24%) Query: 11 FVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RV 66 +P +K + +Q + ++ + A R + P Sbjct: 104 VIPRPEKKKAEVKRPKQ---PLALYARYTFENFVEGECNSTAFRACQAVAENPGDPALNP 160 Query: 67 VILVGPSGSGKSCLANIWSDKSR------------STRFSNIAKSLDSILIDTRKPV--L 112 + + G SG GK+ L + K + + F A ++ S L + V L Sbjct: 161 LFVYGESGLGKTHLLQSIAAKIQKSRPEASIVYCHAYDFLRDATAMASALHNKTGNVREL 220 Query: 113 LEDI------------------DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 E + + +L +I + ++++ P + V Sbjct: 221 AEKFRERYELCDVLLLDDVQLLEKGLWTQDRLAILIKHLRAEGKQVVISCDRHPNLFRVV 280 Query: 155 LPD-----------------LCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 D L + L + V I PD +I K D Sbjct: 281 DTDNESRGSSRSSIPSISKKLLAPLASCVAVGIDEPDLATRMNLISKKSED 331 >gi|149003109|ref|ZP_01828018.1| chromosomal replication initiation protein [Streptococcus pneumoniae SP14-BS69] gi|147758850|gb|EDK65846.1| chromosomal replication initiation protein [Streptococcus pneumoniae SP14-BS69] Length = 270 Score = 59.8 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 23/159 (14%), Positives = 50/159 (31%), Gaps = 27/159 (16%) Query: 31 SFPRCLGISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87 + D+ + AV + + + + G G GK+ L N ++ Sbjct: 112 DTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTYNPLFIYGGPGLGKTHLLNAIGNE 171 Query: 88 -----SRSTRFSNIAKSLDSILID---------------TRKPVLLEDIDLLDF----ND 123 + A+S + +D + +L++DI L Sbjct: 172 ILKNIPNARVKYIPAESFINDFLDHLRLGEMEKFKKTYRSLDLLLIDDIQSLSGKKVATQ 231 Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 + F+ N++H +++T+ P L +R Sbjct: 232 EEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRF 270 >gi|86169595|gb|ABC87037.1| chromosomal replication initiation protein [Leuconostoc gelidum KCTC 3527] Length = 231 Score = 59.8 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 25/143 (17%), Positives = 54/143 (37%), Gaps = 11/143 (7%) Query: 107 TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 T +L++DI + + F+ N + + ++MT+ P DL SRL Sbjct: 43 TVDLLLIDDIQFWSGKEKVQEEFFNTFNVLTKTGKQIIMTSDKLPTEIV----DLQSRLT 98 Query: 164 ----AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 A + I PD ++ + + I + I +++ ++ E + Sbjct: 99 SRFEAGISMDIQKPDLPTRVAILKNLAETDNLEIPNDVLELIADKIDSNIRTLEGTFHRF 158 Query: 220 DNLALSRGMGITRSLAAEVLKET 242 + + R T+ A ++L + Sbjct: 159 EAMLRYRNKPATKETAQKILGDL 181 >gi|118580657|ref|YP_901907.1| recombination factor protein RarA [Pelobacter propionicus DSM 2379] gi|118503367|gb|ABK99849.1| Recombination protein MgsA [Pelobacter propionicus DSM 2379] Length = 448 Score = 59.8 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 35/196 (17%), Positives = 78/196 (39%), Gaps = 31/196 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTRKPVL-L 113 +I GP G GK+ LA++ + ++R+ I + + + R+ +L + Sbjct: 64 LIFWGPPGCGKTTLAHVIARETRAHFIFFSAILSGIKEIREIFREAEGVASRGRRTILFV 123 Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 ++I + + F + ++ A T S+ V P L SR V+ + Sbjct: 124 DEIHRFNKSQQDAFLPY---VEKGVVTMIGATTENPSFEVIAP-LLSR---CRVLTLKQL 176 Query: 174 DDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA-LS 225 + + +I + ADR + I ++ ++ ++ A ++ ++ A L+ Sbjct: 177 EPSTIAGLIGQALADRERGLGELGLDISEEGLDFLSRQAG---GDARVALNTLEVAAGLA 233 Query: 226 RGMGITRSLAAEVLKE 241 R I+ E L++ Sbjct: 234 RERLISLETVQEALQK 249 >gi|187250573|ref|YP_001875055.1| DNA replication initiation ATPase [Elusimicrobium minutum Pei191] gi|186970733|gb|ACC97718.1| ATPase involved in DNA replication initiation [Elusimicrobium minutum Pei191] Length = 1097 Score = 59.4 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 69/178 (38%), Gaps = 36/178 (20%) Query: 7 DYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHS---AIEQAVRLIDSWPSWP 63 D+S + D++K++ P P + D +++ + A A+ +ID+ P Sbjct: 692 DHSIELADREKHNWP--------LEVPLVPTYTFDSMVIGANRFAHATAISVIDN-PGNL 742 Query: 64 SRVVILVGPSGSGKSCLANIWSDK------------SRSTRFSNIAKSLD--------SI 103 ++L G +G+GK+ N + RFS + Sbjct: 743 YNPLVLHGATGTGKTHFLNAIGYALSKKYGQQNIFLTNGVRFSRGIQRYVVEGKINTFEE 802 Query: 104 LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158 + K VL++DI L N+ + +N Q + +++T++ P S L +L Sbjct: 803 FVKNTKAVLIDDIHLTAVNEQNREYISKYLNYFLQSNKQIVITSKYPPESLA-KLEEL 859 >gi|302327394|gb|ADL26595.1| chromosomal replication initiator protein DnaA [Fibrobacter succinogenes subsp. succinogenes S85] Length = 481 Score = 59.4 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 34/231 (14%), Positives = 65/231 (28%), Gaps = 56/231 (24%) Query: 11 FVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RV 66 +P +K + +Q + ++ + A R + P Sbjct: 98 VIPRPEKKKAEVKRPKQ---PLALYARYTFENFVEGECNSTAFRACQAVAENPGDPALNP 154 Query: 67 VILVGPSGSGKSCLANIWSDKSR------------STRFSNIAKSLDSILIDTRKPV--L 112 + + G SG GK+ L + K + + F A ++ S L + V L Sbjct: 155 LFVYGESGLGKTHLLQSIAAKIQKSRPEASIVYCHAYDFLRDATAMASALHNKTGNVREL 214 Query: 113 LEDI------------------DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 E + + +L +I + ++++ P + V Sbjct: 215 AEKFRERYELCDVLLLDDVQLLEKGLWTQDRLAILIKHLRAEGKQVVISCDRHPNLFRVV 274 Query: 155 LPD-----------------LCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 D L + L + V I PD +I K D Sbjct: 275 DTDNESRGSSRSSIPSISKKLLAPLASCVAVGIDEPDLATRMNLISKKSED 325 >gi|291294968|ref|YP_003506366.1| AAA ATPase [Meiothermus ruber DSM 1279] gi|290469927|gb|ADD27346.1| AAA ATPase [Meiothermus ruber DSM 1279] Length = 274 Score = 59.4 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 58/145 (40%), Gaps = 22/145 (15%) Query: 45 VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK----SRSTRFSNIAKSL 100 VH+ A I++ ++ ++ L GP G GK+ LA + + R RF + L Sbjct: 105 VHAGNRAA---IEAARAYRGGLLYLWGPPGVGKTHLALRLAGRLVGEGRFVRFHSELDFL 161 Query: 101 DSILIDTRKPVLLEDIDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPV 149 + L + L +D +L+ ++ L++T+ P Sbjct: 162 AEERLAAAGEGALPQYERLILDDGGKARISPFSAERLYALVERASAGGCDLILTSNLSPE 221 Query: 150 SWGVCLPD----LCSRLKAATVVKI 170 ++ L + + SR+K + VV++ Sbjct: 222 AFAARLGEVGEAVLSRIKGSEVVEV 246 >gi|119713533|gb|ABL97586.1| ATPase AAA family protein [uncultured marine bacterium EB0_35D03] Length = 417 Score = 59.0 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 39/188 (20%), Positives = 78/188 (41%), Gaps = 24/188 (12%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND--T 124 ++ GPSG GK+ LA I + + F ++ LD I ++E +L +D T Sbjct: 44 MVFWGPSGVGKTTLARIICSQMGAH-FEQMSAVLDGIKELRN---VIEHAELYKQHDKNT 99 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + L+ A T S+ + L SR++ V ++ Sbjct: 100 ILFVDEIHRFNKAQQDAFLPHIESGLITLIGATTENPSFEIN-SSLLSRMR---VYILNK 155 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232 D+ L+ + K ++I + + +E S A +L++ ++ L ++ Sbjct: 156 LRDEDLKIIASKAIKSQKITLKDN--DALSLIIEHSDGDARRLINIIEQLTDKSNRTLSI 213 Query: 233 SLAAEVLK 240 + +++L+ Sbjct: 214 NDVSKILQ 221 >gi|302336540|ref|YP_003801747.1| Chromosomal replication initiator DnaA [Olsenella uli DSM 7084] gi|301320380|gb|ADK68867.1| Chromosomal replication initiator DnaA [Olsenella uli DSM 7084] Length = 532 Score = 59.0 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 26/182 (14%), Positives = 56/182 (30%), Gaps = 33/182 (18%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSD---- 86 ++ D + A + + + G SG GK+ L + Sbjct: 173 VDSKLTFDRFVAGEENMLAYEAAKQVANGENKSYNPLFIHGKSGLGKTHLLRAIQNYIVH 232 Query: 87 ---------KSRSTRFSNIAKSLDSILIDTRKPV--LLEDIDLLDFNDTQ---------- 125 ++ + + + R + +++D+L +D Q Sbjct: 233 NDPSRLCVYRTAAEFIEEYRIAWNDSETSARSVLSKSYQNVDVLIIDDIQNMRTAAGTIR 292 Query: 126 -LFHIINSIHQYDSSLLMTARTFPVSWGVCLP--DLC--SRLKAATVVKISLPDDDFLEK 180 F N++ + ++ A P+ G D SR+ + V I +PD + Sbjct: 293 FFFETFNALVSHGKQIVCAADRSPLQLGTGDSKFDERETSRMDSGVTVSIQVPDYELKLN 352 Query: 181 VI 182 +I Sbjct: 353 LI 354 >gi|322435979|ref|YP_004218191.1| AAA ATPase central domain protein [Acidobacterium sp. MP5ACTX9] gi|321163706|gb|ADW69411.1| AAA ATPase central domain protein [Acidobacterium sp. MP5ACTX9] Length = 445 Score = 59.0 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 45/199 (22%), Positives = 75/199 (37%), Gaps = 34/199 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125 +I GP G GK+ LA I + K++++ A I K V++E F Sbjct: 58 MIFWGPPGVGKTTLAKIIAQKTQASFIEFSAVLSG---IKEIKNVMVEAEKASQFGSRTI 114 Query: 126 LF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 LF H N + + L+ A T S+ + L SR V + Sbjct: 115 LFVDEIHRFNKAQQDAFLPYVERGTIRLIGATTENPSFEINAA-LLSR---CRVYTLQPL 170 Query: 174 DDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA-LS 225 +D + ++ + AD + D+ A I A ++ ++ A L+ Sbjct: 171 SEDEVIALLRRALADSEYGLGESGVEADEDALASIAAYAS---GDARTALNALEVAAQLA 227 Query: 226 RGMG---ITRSLAAEVLKE 241 G G IT+ LAAE ++ Sbjct: 228 TGRGETTITKPLAAEAMQR 246 >gi|86169615|gb|ABC87047.1| chromosomal replication initiation protein [Weissella halotolerans] Length = 224 Score = 59.0 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 23/181 (12%), Positives = 58/181 (32%), Gaps = 29/181 (16%) Query: 88 SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTA 144 + + R A + ++++D+ L + + F+ N+I + ++ +++T+ Sbjct: 17 TEALRRGPKATEAFKREYRSTDLLMVDDVQFLSGKEKIQEEFFNTFNAITRENNQIVLTS 76 Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 P L +R I+ PD ++ + I + I Sbjct: 77 DKLPKEIPGLEMRLVTRFGQGYSANITKPDLPTRVAILRNKSDQEGLNIPNDVIDEIAAA 136 Query: 205 ME---RSLV--------------------FAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 ++ R L A +++ M+ R IT + +++ Sbjct: 137 VDTNVRDLEGVFNQVVGKMRFSNAPITVDTARSILETMN---FKRQRAITIPIIQDIVAR 193 Query: 242 T 242 Sbjct: 194 Y 194 >gi|23014789|ref|ZP_00054589.1| COG0593: ATPase involved in DNA replication initiation [Magnetospirillum magnetotacticum MS-1] Length = 210 Score = 59.0 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 15/111 (13%), Positives = 39/111 (35%) Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194 ++++A P L SR+ V I + ++ + Sbjct: 2 DQGRQIVISADKSPSDLEGIEERLRSRMACGLVADIHATTYELRLGILQSKAEQMGAIVP 61 Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 +K+ ++ ++ ++ E ++++ + G IT EVL + + Sbjct: 62 QKVLEFLAHKIISNIRELEGALNRVVAHSQLVGRAITLETTQEVLHDLLRA 112 >gi|308274127|emb|CBX30726.1| Chromosomal replication initiator protein dnaA [uncultured Desulfobacterium sp.] Length = 453 Score = 59.0 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 41/255 (16%), Positives = 85/255 (33%), Gaps = 38/255 (14%) Query: 27 QLFFS-FPRCLGISR--------DDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSG 74 QL R D +V E A + + + + L+ +G Sbjct: 100 QLPLPNENIQPHYGRFLRKDFTFDHFVVGGNNEFAFTASLSLAAKKNSQQNCLFLLSKTG 159 Query: 75 SGKSCLA-----NIWSDKSRSTRFSNIAKSLDSILIDTRKP----------------VLL 113 GKS L+ +I S + A+ + ++ + +LL Sbjct: 160 MGKSHLSQAVGHHIISQYPEERVYYLTAEDFSNEMVQAYRTDSIDKFKGKYRKECDILLL 219 Query: 114 EDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVK 169 ED+ L + +L ++++ D ++ ++ P L D L SR + Sbjct: 220 EDVHSLSGKERTQIELALTLDTLLDADKKIIFSSCYLPGDIP-KLNDKLKSRFSYGIISS 278 Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229 I P+ +++ K + +++ Y+ + + E + + + G+ Sbjct: 279 IEPPNFRTRVRILQKKMLSNGYQVQEEVINYLASELTEDVRQLESGLIGVTARSSLMGIP 338 Query: 230 ITRSLAAEVLKETQQ 244 I LA V+K Q Sbjct: 339 INLELAENVVKNIAQ 353 >gi|213422285|ref|ZP_03355351.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 82 Score = 59.0 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 3/71 (4%) Query: 107 TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 + +L++DI + + FH N++ + + +++T+ +P L SR Sbjct: 6 SVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFG 65 Query: 164 AATVVKISLPD 174 V I P+ Sbjct: 66 WGLTVAIEPPE 76 >gi|225872629|ref|YP_002754086.1| ATPase, AAA family [Acidobacterium capsulatum ATCC 51196] gi|225792545|gb|ACO32635.1| ATPase, AAA family [Acidobacterium capsulatum ATCC 51196] Length = 448 Score = 59.0 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 43/201 (21%), Positives = 75/201 (37%), Gaps = 37/201 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD--FNDT 124 +I GP G GK+ LA I ++ + ++ A I ++ D + + T Sbjct: 58 MIFWGPPGVGKTTLAKIVAETTHASFIEFSAVLSGIKEIKQ----VMADAEKASTYGSRT 113 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + + L+ A T S+ V L SR V + Sbjct: 114 ILFVDEIHRFNRAQQDAFLPYVERGTIRLIGATTENPSFEVNAA-LLSR---CRVYTLQA 169 Query: 173 PDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA-L 224 +D L ++ + ADR + D A I + S A ++ ++ A L Sbjct: 170 LTEDDLVSLLERAAADRERGLGNMGVTFDADALALIA---DYSSGDARNALNALEVAAKL 226 Query: 225 SRGM----GITRSLAAEVLKE 241 ++ ++R LA E L++ Sbjct: 227 AQSREENPRVSRELAQEALQQ 247 >gi|86169607|gb|ABC87043.1| chromosomal replication initiation protein [Weissella paramesenteroides] Length = 244 Score = 58.6 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 22/161 (13%), Positives = 52/161 (32%), Gaps = 29/161 (18%) Query: 107 TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 + ++++D+ L + + F+ N+I + + +++T+ P L +R Sbjct: 47 STDLLMVDDVQFLAGKEKIQEEFFNTFNAITRENHQIVLTSDKLPKEIPGLEMRLVTRFG 106 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---RSL----------- 209 I+ PD ++ + I + I ++ R L Sbjct: 107 QGYSANITKPDLPTRVAILRNKSDLENLSIPNDVIDEIAAAVDTNVRDLEGVFNQVVGKM 166 Query: 210 ---------VFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 A +++ M+ R IT + E + Sbjct: 167 RFSNVPVTVETARTILETMN---FKRQRAITIPIIQEAVAN 204 >gi|219849982|ref|YP_002464415.1| recombination factor protein RarA [Chloroflexus aggregans DSM 9485] gi|219544241|gb|ACL25979.1| AAA ATPase central domain protein [Chloroflexus aggregans DSM 9485] Length = 485 Score = 58.2 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 43/201 (21%), Positives = 76/201 (37%), Gaps = 37/201 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF--NDT 124 +IL GP GSGK+ LA I ++ + + F ++ + R V+ E D L T Sbjct: 62 LILWGPPGSGKTTLAQIIANSTNAH-FEPLSAVSAGVNDLRR--VVQEAKDRLGMFQQRT 118 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +F H N + + +L+ A T S+ V L SR A V + Sbjct: 119 VVFIDEIHRFNKSQQDAILPYVEDGTIILIGATTENPSFEVNAA-LLSR---ARVFTLEA 174 Query: 173 PDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL--- 222 D+ + +I + +DR +I + Y++ S A ++ ++ Sbjct: 175 LTDEEIGILIDRALSDRERGLGGMKIMLASDARKYLINM---SNGDARTALNALEAAARS 231 Query: 223 ---ALSRGMGITRSLAAEVLK 240 A+ IT + L+ Sbjct: 232 KPPAIGETRLITVDDIRDALQ 252 >gi|309791858|ref|ZP_07686343.1| AAA ATPase central domain protein [Oscillochloris trichoides DG6] gi|308226098|gb|EFO79841.1| AAA ATPase central domain protein [Oscillochloris trichoides DG6] Length = 486 Score = 58.2 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 72/201 (35%), Gaps = 37/201 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125 +IL GP GSGK+ LA I + + + S + + + V+ E D L + Sbjct: 61 IILWGPPGSGKTTLARIVASSTNAHF---TQVSAVNAGVADLRAVIQEAQDRLGMYQQRT 117 Query: 126 -LF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + + +L+ A T S+ V L SR A V + Sbjct: 118 VLFIDEIHRFNKGQQDAVLPYVEDGTIILIGATTENPSFEVNSA-LLSR---ARVFTLQA 173 Query: 173 PDDDFLEKVIVKMFAD--RQIF-----IDKKLAAYIVQRMERSLVFAEKLVDKMDNL--- 222 D + +++ + AD R + + Y++ A ++ ++ Sbjct: 174 LSDAEIGQLVDRALADAERGLATYQPMLATDARGYLINMAN---GDARTALNALEAAVLA 230 Query: 223 ---ALSRGMGITRSLAAEVLK 240 +L IT + L+ Sbjct: 231 KAPSLGDKRLITLDDIRDALQ 251 >gi|221632458|ref|YP_002521679.1| recombination factor protein RarA [Thermomicrobium roseum DSM 5159] gi|221157227|gb|ACM06354.1| ATPase, aaa family [Thermomicrobium roseum DSM 5159] Length = 450 Score = 58.2 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 40/194 (20%), Positives = 72/194 (37%), Gaps = 32/194 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD--FNDT 124 +IL GP G GK+ LA + + +RS S S + + V+ E D T Sbjct: 56 LILWGPPGCGKTTLARLIAKHTRSAFVP---LSAVSASVADIRRVVQEASDRFAQHGQRT 112 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +F H N + + +L+ A T S+ + P L SR VV + Sbjct: 113 IVFIDEIHRFNRAQQDALLPAVEDGTIVLIGATTENPSFEINAP-LLSR---CRVVVLEP 168 Query: 173 PDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL- 224 D ++ ++ + DR + I+ + +V A ++ ++ A Sbjct: 169 LSDQAIQTLVERALVDRERGLGELGLRIEPEALRLLVGLAN---GDARMALNTLEVAAAG 225 Query: 225 SRGMGITRSLAAEV 238 ++ IT L + Sbjct: 226 AQEGTITVELVHQA 239 >gi|18129331|emb|CAC83489.1| DnaA protein [Wolbachia endosymbiont of Brugia pahangi] Length = 163 Score = 58.2 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 16/112 (14%), Positives = 46/112 (41%), Gaps = 1/112 (0%) Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194 + L+++A P + SRL V I+ + ++ +++ Sbjct: 2 DQNKQLVISADRSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQAKVEQMNMYVP 61 Query: 195 KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + + ++ + + ++ E ++K+ + +L G +T A+E L + + + Sbjct: 62 QDVLEFLARNIRSNIRELEGALNKVAHTSLI-GRSMTVESASETLMDLLRSN 112 >gi|86169613|gb|ABC87046.1| chromosomal replication initiation protein [Weissella viridescens] Length = 236 Score = 58.2 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 22/178 (12%), Positives = 56/178 (31%), Gaps = 23/178 (12%) Query: 88 SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTA 144 + + R A + ++++D+ L + + F+ N+I + ++ +++T+ Sbjct: 27 TEALRRGPKATEAFKREYRSTDLLMVDDVQFLAGKEKIQEEFFNTFNAITRENNQIVLTS 86 Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 P L +R I+ PD ++ + I + I Sbjct: 87 DKLPKEIPGLEMRLVTRFGQGYSANITKPDLPTRVAILRNKSDQENLNIPNDVIDEIAAA 146 Query: 205 ME---RSLVFAEKLV-----------------DKMDNLALSRGMGITRSLAAEVLKET 242 ++ R L V ++ ++ R IT + + + Sbjct: 147 VDTNVRDLEGVFNQVVGKMKFSKADVTVETARSILEKMSFKRQRAITVPIIQDTVATY 204 >gi|148263766|ref|YP_001230472.1| recombination factor protein RarA [Geobacter uraniireducens Rf4] gi|146397266|gb|ABQ25899.1| Recombination protein MgsA [Geobacter uraniireducens Rf4] Length = 435 Score = 58.2 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 41/197 (20%), Positives = 78/197 (39%), Gaps = 32/197 (16%) Query: 67 VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I GP GSGK+ LA I + KS FS I + I ++ +DI T Sbjct: 55 LIFWGPPGSGKTTLARIIAGATKSHFIFFSAILSGIKEIREIVKEA---DDIRKFHGKRT 111 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + ++ A T S+ V P L SR V+ ++ Sbjct: 112 ILFVDEIHRFNKSQQDAFLPYVERGVFTIIGATTENPSFEVIAP-LLSR---CKVLVLNP 167 Query: 173 PDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA-L 224 ++ + ++ + AD R + I+ ++ E++ A ++ ++ + L Sbjct: 168 LTEEEITGILRQALADKERGLGALDLAIEDDALTFMA---EQAGGDARVALNTLETASRL 224 Query: 225 SRGMGITRSLAAEVLKE 241 + ++ A E +++ Sbjct: 225 TSNGVVSLDTAREAVQK 241 >gi|317486108|ref|ZP_07944955.1| bacterial dnaA helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316922631|gb|EFV43870.1| bacterial dnaA helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 516 Score = 57.9 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 25/184 (13%), Positives = 61/184 (33%), Gaps = 43/184 (23%) Query: 65 RVVILVGPSGSGKSCLANI--------------WSDKSR-STRFSNIAKSLDSILIDTRK 109 +++L GP G+GK+ L ++ S F+ + + +++ Sbjct: 197 GLLVLCGPHGTGKTHLLRAIGNELFRTLGSDLYYASLSDLELLFAGRSVLAARQELLSKE 256 Query: 110 PVLLED-------------------IDLLDFND--------TQLFHIINSIHQYDSSLLM 142 VL++D ++ + +L +++ +++ Sbjct: 257 AVLIDDFQHLSRIPDKTPTTASRFRAQIVAEPEQPAGPSVREELCLLLDRFMDQGKPVIV 316 Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 P W + L SRL+ ++ PD D + + R++ + ++ I Sbjct: 317 AGVGRPKEWSLGKA-LLSRLETGLWAELPEPDLDVRLRYAQQQAKFRRLPLSREQLLLIA 375 Query: 203 QRME 206 Q Sbjct: 376 QHCP 379 >gi|283778829|ref|YP_003369584.1| chromosomal replication initiator DnaA domain-containing protein [Pirellula staleyi DSM 6068] gi|283437282|gb|ADB15724.1| Chromosomal replication initiator DnaA domain protein [Pirellula staleyi DSM 6068] Length = 398 Score = 57.9 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 36/189 (19%), Positives = 81/189 (42%), Gaps = 29/189 (15%) Query: 39 SRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAK 98 ++ LV A E ++ D W + ++ G SG+GK+ L I +D+ R R + + Sbjct: 30 GSENALVQIAAEVVLQHDDR-RRWMNP-LVFCGSSGAGKTSLVQILADEKR--RLAPKSN 85 Query: 99 SLDSILIDTRKP----------------------VLLEDIDLLDF---NDTQLFHIINSI 133 L + D + ++L+D+ L +L +I+++ Sbjct: 86 VLHEVATDFARSYAHAVDTDSIADFRAKHTRCDLLVLDDLHRLAGKAAAQQELIAVIDAM 145 Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193 + + +L+T + P + LP L SR+ + ++LP + + ++ + A + + + Sbjct: 146 IRRGALVLLTLKNLPAATRGLLPMLASRISQGLTLSLALPGVEARDALLRVIAAQQGLLL 205 Query: 194 DKKLAAYIV 202 ++LA + Sbjct: 206 PEELAEQLA 214 >gi|302668625|ref|YP_003833073.1| chromosomal replication initiator protein DnaA2 [Butyrivibrio proteoclasticus B316] gi|302397589|gb|ADL36491.1| chromosomal replication initiator protein DnaA2 [Butyrivibrio proteoclasticus B316] Length = 281 Score = 57.9 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 57/161 (35%), Gaps = 27/161 (16%) Query: 37 GISRDDLLVHSAI---EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN----------- 82 S + V S QA +LI + + G GSGK+ L Sbjct: 121 KYSFLNFRVSSGNYFAFQAAQLIIDPRKESYNPLYIYGDHGSGKTHLLKTIEDYINHESD 180 Query: 83 ------IWSDKSRSTRFSNIAKSLDSILIDTRKP---VLLEDIDLLDFNDTQ---LFHII 130 I ++K + + +D + +L++DID L +II Sbjct: 181 DKRAFYILAEKFINDVMDMKTNGNSNKFVDFYRSLDVLLIDDIDCFVGKSEASSELVNII 240 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 + + + L+ +++ P G+ L SR++ + +I Sbjct: 241 DVMLNDEKQLVFSSQKEPRKLGIEEA-LISRIEKGLLARIE 280 >gi|118431492|ref|NP_147998.2| replication factor C large subunit [Aeropyrum pernix K1] gi|42559546|sp|Q9YBS5|RFCL_AERPE RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|116062817|dbj|BAA80523.2| replication factor C large subunit [Aeropyrum pernix K1] Length = 479 Score = 57.9 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 80/198 (40%), Gaps = 27/198 (13%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIA------KSLDSILIDTRK--------- 109 R +L GP G GK+ L + + A ++ I+ + Sbjct: 50 RAALLYGPPGVGKTSLVEAIASEFNLEMIELNASDYRRRSDIERIVGAASRKRSMFKRGV 109 Query: 110 PVLLEDIDLLDFNDTQ--LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 +LL+++D ++ + + +++ I ++ ++MTA W L L + + + Sbjct: 110 VILLDEVDGINPREDAGGIEALLSVIKTTENPIVMTANDP---WKDFLRPLR---EVSLM 163 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 V+ + V+ ++ +I +++ YI ERS ++ + +A G Sbjct: 164 VEFRPLTLTHIVAVLQRICEAERIECEREALRYIA---ERSEGDLRSAINDLQAVAEGYG 220 Query: 228 MGITRSLAAEVLKETQQC 245 +T +LA E+++ ++ Sbjct: 221 R-VTLTLAREIVRGREKS 237 >gi|269836458|ref|YP_003318686.1| AAA ATPase central domain-containing protein [Sphaerobacter thermophilus DSM 20745] gi|269785721|gb|ACZ37864.1| AAA ATPase central domain protein [Sphaerobacter thermophilus DSM 20745] Length = 460 Score = 57.5 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 63/158 (39%), Gaps = 28/158 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125 +IL GP GSGK+ LA I + +++ A S + + E D L + + Sbjct: 55 LILWGPPGSGKTTLARIIATVTKAEFVQVSAVSAGVADLRRE---VKEASDRLGMHGRRT 111 Query: 126 -LF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + + +L+ A T S+ V P L SR + V+ + Sbjct: 112 ILFIDEIHRFNRAQQDAILPYVEDGTIILIGATTENPSFEVNSP-LLSR---SRVIVLKA 167 Query: 173 PDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQ 203 DDD + ++++ D + + ID +V Sbjct: 168 LDDDAVRTIVLRALEDPERGLGGQGLRIDDSALDLLVN 205 >gi|321472580|gb|EFX83549.1| hypothetical protein DAPPUDRAFT_239463 [Daphnia pulex] Length = 79 Score = 57.5 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 22/50 (44%) Query: 28 LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGK 77 L F G D V ++ A + SW WP +++ GPSG GK Sbjct: 28 LTFLTTILSGFEPQDFDVEASNRDAFTWVKSWVQWPKPGLVIYGPSGCGK 77 >gi|159897930|ref|YP_001544177.1| IstB ATP binding domain-containing protein [Herpetosiphon aurantiacus ATCC 23779] gi|159890969|gb|ABX04049.1| IstB domain protein ATP-binding protein [Herpetosiphon aurantiacus ATCC 23779] Length = 267 Score = 57.5 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 54/156 (34%), Gaps = 33/156 (21%) Query: 52 AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP- 110 AV ++ P + LVG G GK+ LA + ++ F + + L R Sbjct: 99 AVGAAQAFADNPDGFLTLVGNPGCGKTHLAQAIGNALQARGFEVVWSTAPDALRLLRSTF 158 Query: 111 -----------------------VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTA 144 +LL+D+ + D LF ++N ++Y ++T+ Sbjct: 159 DQTSNKPKNSFDEQFELFRKAPMLLLDDLGAENATDWGKETLFQLLNERYEYQRPTVITS 218 Query: 145 RTFPVSWGVCLP---DLCSRLK---AATVVKISLPD 174 P + LCSRL +V + D Sbjct: 219 NLHPNTAEANRRFGMRLCSRLLDAVQGQLVVVQAAD 254 >gi|10198155|gb|AAG15220.1|AF288461_6 unknown [Chloroflexus aurantiacus] Length = 377 Score = 57.5 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 43/203 (21%), Positives = 78/203 (38%), Gaps = 41/203 (20%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLDF--N 122 +IL GP GSGK+ LA I + +++ S ++ ++ + + V+ E D L Sbjct: 62 LILWGPPGSGKTTLAQIIAHSTKAHFEPISAVSAGVNDL-----RRVVQEAQDRLGMFQQ 116 Query: 123 DTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 T +F H N + + +L+ A T S+ V L SR A V K+ Sbjct: 117 RTVVFIDEIHRFNKSQQDAILPYVEDGTIILIGATTENPSFEVNSA-LLSR---ARVFKL 172 Query: 171 SLPDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL- 222 D+ + +I + DR +I + + Y+V A ++ ++ Sbjct: 173 EALTDEEIGVLIDRALTDRERGLGDLKIMLARDARDYLVNMAN---GDARTALNALEAAA 229 Query: 223 -----ALSRGMGITRSLAAEVLK 240 A+ IT + L+ Sbjct: 230 RSKPPAIGETRLITVDDIRDALQ 252 >gi|163846016|ref|YP_001634060.1| recombination factor protein RarA [Chloroflexus aurantiacus J-10-fl] gi|222523744|ref|YP_002568214.1| recombination factor protein RarA [Chloroflexus sp. Y-400-fl] gi|163667305|gb|ABY33671.1| AAA ATPase central domain protein [Chloroflexus aurantiacus J-10-fl] gi|222447623|gb|ACM51889.1| AAA ATPase central domain protein [Chloroflexus sp. Y-400-fl] Length = 497 Score = 57.5 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 43/203 (21%), Positives = 78/203 (38%), Gaps = 41/203 (20%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLDF--N 122 +IL GP GSGK+ LA I + +++ S ++ ++ + + V+ E D L Sbjct: 62 LILWGPPGSGKTTLAQIIAHSTKAHFEPISAVSAGVNDL-----RRVVQEAQDRLGMFQQ 116 Query: 123 DTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 T +F H N + + +L+ A T S+ V L SR A V K+ Sbjct: 117 RTVVFIDEIHRFNKSQQDAILPYVEDGTIILIGATTENPSFEVNSA-LLSR---ARVFKL 172 Query: 171 SLPDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL- 222 D+ + +I + DR +I + + Y+V A ++ ++ Sbjct: 173 EALTDEEIGVLIDRALTDRERGLGDLKIMLARDARDYLVNMAN---GDARTALNALEAAA 229 Query: 223 -----ALSRGMGITRSLAAEVLK 240 A+ IT + L+ Sbjct: 230 RSKPPAIGETRLITVDDIRDALQ 252 >gi|308270409|emb|CBX27021.1| Replication-associated recombination protein A [uncultured Desulfobacterium sp.] Length = 456 Score = 57.1 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 39/183 (21%), Positives = 69/183 (37%), Gaps = 41/183 (22%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA I + ++ S A I ++E+ N +L Sbjct: 60 MILWGPPGCGKTTLARIIARETSSYFMHFSAVLSGVKEIRA----VIEE----AKNQLKL 111 Query: 127 F-----------HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 F H N + L+ A T S+ V P L SR V Sbjct: 112 FRKRSILFVDEIHRFNKAQQDAFLHHVESGLITLIGATTENPSFEVISP-LLSR---CRV 167 Query: 168 VKISLPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 + + DD + ++I D R + + +++ +++V R+ S A ++ ++ Sbjct: 168 ITLKTLSDDDISRIIDSALKDKERGLGELNLSLSEEVLSHLV-RI--SDGDARMALNSLE 224 Query: 221 NLA 223 A Sbjct: 225 IAA 227 >gi|320354919|ref|YP_004196258.1| Recombination protein MgsA [Desulfobulbus propionicus DSM 2032] gi|320123421|gb|ADW18967.1| Recombination protein MgsA [Desulfobulbus propionicus DSM 2032] Length = 499 Score = 57.1 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 42/213 (19%), Positives = 77/213 (36%), Gaps = 48/213 (22%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLED----IDLLD 120 ++L GP GSGK+ LA I + S ++L ++ + D + D Sbjct: 91 PSLVLWGPPGSGKTTLATILAHA-----VSAHFVFFSAVLSGVKEIRQIVDQAKSVHEQD 145 Query: 121 FNDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168 T LF H N + L+ A T S+ + P L SR V+ Sbjct: 146 GRPTILFVDEIHRFNKSQQDAFLPHVESGLLTLIGATTENPSFQITAP-LLSR---CQVL 201 Query: 169 KISLPDDDFLEKVIVKM-------FADRQIFIDKKLAAYI-----------VQRMERSLV 210 ++ D + L++V+ + F D ++ ID + + + +E Sbjct: 202 LLAPLDRNDLKQVMRRALIDTSVGFGDDRLTIDDQALDLLADTADGDCRRALNHLE---T 258 Query: 211 FAEKLVDKMDN--LALSRGMGITRSLAAEVLKE 241 A ++++ A IT + E L++ Sbjct: 259 AAALTLEQLKRQPAAGEAERTITVAQVRETLQQ 291 >gi|229918427|ref|YP_002887073.1| ATPase AAA [Exiguobacterium sp. AT1b] gi|229469856|gb|ACQ71628.1| AAA ATPase central domain protein [Exiguobacterium sp. AT1b] Length = 438 Score = 57.1 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 39/173 (22%), Positives = 71/173 (41%), Gaps = 27/173 (15%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G+GK+ LA + S+ +++T A + +D + V+ E D+ D Sbjct: 48 GTIILYGPPGTGKTTLARVISNYTKATFVQLNAVT---AKLDELRNVIREAESRYDYEDE 104 Query: 125 Q--LF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 + LF H N + +L+ A T S+ V L SR ATV ++ Sbjct: 105 RTILFLDEIHRFNKLQQDALLPALESGKLVLIGATTENPSFEVNAA-LLSR---ATVFRL 160 Query: 171 SLPDDDFLEKVIVKMFAD-RQI-----FIDKKLAAYIVQRMERSLVFAEKLVD 217 P + L V+ + D R + +D+ A + ++ + ++ Sbjct: 161 EPPRAEELRTVLERALHDSRGLGNYPVKMDEAAADHYIKMADGDYRVLLNALE 213 >gi|15669074|ref|NP_247879.1| replication factor C large subunit [Methanocaldococcus jannaschii DSM 2661] gi|42559434|sp|Q58294|RFCL_METJA RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|1591562|gb|AAB98888.1| activator 1 (replication factor C), 53 KD subunit [Methanocaldococcus jannaschii DSM 2661] Length = 516 Score = 57.1 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 70/176 (39%), Gaps = 26/176 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIA---------------KSLDSILIDTRKPV 111 ++LVGP G GK+ LA ++ A + S + + + Sbjct: 42 ILLVGPPGCGKTTLAYALANDYGFEVIELNASDKRNSSAIKKVVGHAATSSSIFGKKFLI 101 Query: 112 LLEDIDLLDFNDTQ--LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 +L+++D + + + +I I + + +++TA P + S L V++ Sbjct: 102 VLDEVDGISGKEDAGGVSELIKVIKKAKNPIILTANDAYA------PSIRSLLPYVEVIQ 155 Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 ++ + + KV+ K+ + +D K I Q S ++ ++ LALS Sbjct: 156 LNPVHTNSVYKVLKKIAEKEGLDVDDKTLKMIAQH---SAGDLRSAINDLEALALS 208 >gi|46578418|ref|YP_009226.1| chromosomal replication initiator protein DnaA [Desulfovibrio vulgaris str. Hildenborough] gi|46447829|gb|AAS94485.1| chromosomal replication initiator protein DnaA [Desulfovibrio vulgaris str. Hildenborough] gi|311232350|gb|ADP85204.1| Chromosomal replication initiator DnaA domain protein [Desulfovibrio vulgaris RCH1] Length = 437 Score = 57.1 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 31/227 (13%), Positives = 70/227 (30%), Gaps = 30/227 (13%) Query: 9 SFFVPDKQKNDQPKN--KEEQLFFS-----FPRCLGISRDDLLVHSAIEQAVRLI-DSWP 60 + P+ K Q + P + D + + + + ++ Sbjct: 71 ALVFPEGIKTTDRSTVQPPSQPPLASESVACPFGAAFTFDAFITNRKNQFPLAAAREAAR 130 Query: 61 SWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRFSNIA-----------------KSL 100 + R +L G SG+GK+ L +++ + ++ ++ Sbjct: 131 NGHQRTYNPFVLCGASGNGKTHLLRALANELAALYGTDAVFCGSAEELHDRYNTEERLAM 190 Query: 101 DSILIDTRKPVLLEDIDLLDFND--TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158 L R +L + L D +L + + + + + L Sbjct: 191 RRTLCAHRALLLDDLHRLRALPDLREELTALFDHFYDHGKQMAFAYAGRLSDLDFLEAPL 250 Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 SRL+ +V + PD D + I A + + ++ + QR Sbjct: 251 RSRLELGLIVDLKEPDLDVRVRYIHARCAALSLQLAREHVLTLAQRC 297 >gi|308234059|ref|ZP_07664796.1| Chromosomal replication initiator DnaA [Atopobium vaginae DSM 15829] gi|328943456|ref|ZP_08240921.1| DNA-directed DNA replication initiator protein DnaA [Atopobium vaginae DSM 15829] gi|327491425|gb|EGF23199.1| DNA-directed DNA replication initiator protein DnaA [Atopobium vaginae DSM 15829] Length = 567 Score = 57.1 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 22/181 (12%), Positives = 54/181 (29%), Gaps = 33/181 (18%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWP----SRVVILVGPSGSGKSCLANIWS----- 85 ++ D + + A + + + + G SG GK+ L Sbjct: 211 DSKLTFDRFVQGEENQLAYQAANQVACGSCNQSYNPLFIYGKSGLGKTHLLRAIQNYIIK 270 Query: 86 -----------------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDID---LLDFNDTQ 125 + + + + S + ++ + ++++DI Sbjct: 271 NDPTRTCAYKTATEFIEEYTLAWQKSPLERNALARSYKNIDVLIIDDIQNMRTAAGTIKF 330 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLP--DLC--SRLKAATVVKISLPDDDFLEKV 181 F NS+ ++ A P + D SR+ + + I +P+ + + Sbjct: 331 FFDTFNSLISNGKQIVCAADRSPQELQLGESKFDERETSRMDSGITISIQVPNYELKLNL 390 Query: 182 I 182 I Sbjct: 391 I 391 >gi|90415910|ref|ZP_01223843.1| hypothetical protein GB2207_01717 [marine gamma proteobacterium HTCC2207] gi|90332284|gb|EAS47481.1| hypothetical protein GB2207_01717 [marine gamma proteobacterium HTCC2207] Length = 443 Score = 57.1 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 43/196 (21%), Positives = 69/196 (35%), Gaps = 30/196 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +I GP G GK+ LA I + + + S A I E D L T L Sbjct: 51 MIFWGPPGVGKTTLAKIIAASADAHFESISAVLSGVKEIRASIAKATEQRD-LRGRKTIL 109 Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172 F H N Q D +++ T L SR V + Sbjct: 110 FVDEVHRFNKSQQDAFLPFVEDGTVVFIGATTENPSFELNNA---LLSR---CRVYVLKS 163 Query: 173 PDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 D++ ++ VI + +D RQ+ +D + + + A L++ ++LA Sbjct: 164 LDNEQIKTVIQQALSDQQSGLGERQLQLDDEALDLLASAADGDARRALNLLEIANDLASE 223 Query: 226 RG--MGITRSLAAEVL 239 G I R + +VL Sbjct: 224 SGDLAAIDRRVLEQVL 239 >gi|156938087|ref|YP_001435883.1| replication factor C large subunit [Ignicoccus hospitalis KIN4/I] gi|166977383|sp|A8AC24|RFCL_IGNH4 RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|156567071|gb|ABU82476.1| replication factor C large subunit [Ignicoccus hospitalis KIN4/I] Length = 476 Score = 56.7 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 40/211 (18%), Positives = 86/211 (40%), Gaps = 31/211 (14%) Query: 55 LIDSWPSWP---SRVVILVGPSGSGKSCL----------------ANIWSDKSRSTRFSN 95 I W S R +L GP G GK+ L A+ + K R + Sbjct: 31 WIKKWLSGTPPEKRAALLWGPPGVGKTSLVEAICNEFNLEKIEMNASDFRRKGDIERVAI 90 Query: 96 IAKSLDSILIDTRKPVLLEDIDLLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 A + + + +LL+++D L ++ + I+ I + + ++MTA WG Sbjct: 91 AAATKKPLPPWKGRLILLDEVDGLSPRGDEGAVAAILELIKKTKNPIVMTANDP---WGT 147 Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213 L + + + +V+ + ++K+ ++ +K+ YI +E++ Sbjct: 148 HLRPIR---EESLLVEFKRIPKTKAREFLLKICEKEGVYCEKEAVDYI---IEKNKGDLR 201 Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 ++ + ++A + G +T LA+ +L E + Sbjct: 202 ASINDLQSIAEAYG-KVTLDLASALLVERDR 231 >gi|120601058|ref|YP_965458.1| chromosomal replication initiator protein DnaA [Desulfovibrio vulgaris DP4] gi|120561287|gb|ABM27031.1| chromosomal replication initiator protein DnaA [Desulfovibrio vulgaris DP4] Length = 433 Score = 56.7 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 32/225 (14%), Positives = 71/225 (31%), Gaps = 30/225 (13%) Query: 9 SFFVPDKQKNDQPKNKEEQLFFS-----FPRCLGISRDDLLVHSAIEQAVRLI-DSWPSW 62 + P+ K QL + P + D + + + + ++ + Sbjct: 71 ALVFPEGIKTTD--RSTVQLPLASESVACPFGAAFTFDAFITNRKNQFPLAAAREAARNG 128 Query: 63 PSRV---VILVGPSGSGKSCLANIWSDKSRSTRFSNIA-----------------KSLDS 102 R +L G SG+GK+ L +++ + ++ ++ Sbjct: 129 HQRTYNPFVLCGASGNGKTHLLRALANELAALYGTDAVFCGSAEELHDRYNTEERLAMRR 188 Query: 103 ILIDTRKPVLLEDIDLLDFND--TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 L R +L + L D +L + + + + + L S Sbjct: 189 TLCAHRALLLDDLHRLRALPDLREELTALFDHFYDHGKQMAFAYAGRLSDLDFLEAPLRS 248 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 RL+ +V + PD D + I A + + ++ + QR Sbjct: 249 RLELGLIVDLKEPDLDVRVRYIHARCAALSLQLAREHVLTLAQRC 293 >gi|194333665|ref|YP_002015525.1| recombination factor protein RarA [Prosthecochloris aestuarii DSM 271] gi|194311483|gb|ACF45878.1| AAA ATPase central domain protein [Prosthecochloris aestuarii DSM 271] Length = 454 Score = 56.7 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 58/148 (39%), Gaps = 21/148 (14%) Query: 65 RVVILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 +I GP GSGK+ LA I + R + S + + + + + ++ Sbjct: 63 PSLIFWGPPGSGKTTLAEICAHWLDFRFAKLSAVDAGVKDVRQALEQA---DKARRIEGQ 119 Query: 123 DTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 + LF H N + +L+ A T S+ V L SR++ V ++ Sbjct: 120 RSLLFIDEIHRFNKAQQDSLLHAIEQGIVVLIGATTENPSFEVNAA-LMSRMQ---VYRL 175 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLA 198 D D L++V+++ Q+ D + Sbjct: 176 KPLDRDELKQVVMRALKTDQLLSDAGIV 203 >gi|323704141|ref|ZP_08115720.1| AAA ATPase central domain protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323536207|gb|EGB25979.1| AAA ATPase central domain protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 442 Score = 56.3 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 74/187 (39%), Gaps = 35/187 (18%) Query: 65 RVVILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD-- 120 R +I GP G+GK+ LANI ++ KS + + + + I K ++ E D L Sbjct: 53 RSLIFYGPPGTGKTTLANIIANTTKSSFEKLNAVTSGVTDI-----KKIVNESKDRLSMY 107 Query: 121 FNDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168 T LF H N + + +L+ A T + V P L SR + + Sbjct: 108 GKRTILFVDEIHRFNKSQQDALLPYVEDGTIILIGATTENPYFEVIRP-LVSR---SMIF 163 Query: 169 KISLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 ++ DD + +++++ D R + + +I+ + A ++ ++ Sbjct: 164 ELYPLSDDDIREIVLRALNDEKRGLGNEKIKVTDDALNHIIAYSD---GDARTALNAIEL 220 Query: 222 LALSRGM 228 L+ Sbjct: 221 AFLTTER 227 >gi|218530404|ref|YP_002421220.1| ATPase AAA [Methylobacterium chloromethanicum CM4] gi|218522707|gb|ACK83292.1| AAA ATPase central domain protein [Methylobacterium chloromethanicum CM4] Length = 462 Score = 56.3 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 43/200 (21%), Positives = 79/200 (39%), Gaps = 29/200 (14%) Query: 67 VILVGPSGSGKSCLANIWSD----KSRSTRFSNIAKSLDSILIDTRKP----VLLEDIDL 118 ++L GP G+GK+ + + ++ + K LD ++ R V+LED+DL Sbjct: 232 LLLYGPPGTGKTHIIRYIASNLPTRTAILITAEQVKMLDRYMLLARTLQPSIVVLEDVDL 291 Query: 119 LDFNDTQ--------LFH-IINS---IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA- 165 + + L H ++N +H L + P L SR Sbjct: 292 VGRSREGMNSPKTEVLLHRLLNEMDGLHDDADVLFILTTNRPEEIEEA---LASRPGRVD 348 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME-RSLVFAEKLVDKMDNLAL 224 ++I+ PD +V ++ D I ++ +V R E S F +++V ++ + Sbjct: 349 EAIEIANPD-AACRTRLVSLYGDA-IDFEEGAIDAVVTRSEGASAAFIKEMVRRLAQATI 406 Query: 225 SRGM--GITRSLAAEVLKET 242 + G IT + VL E Sbjct: 407 AAGSGNRITVATVESVLGEA 426 >gi|126466117|ref|YP_001041226.1| replication factor C large subunit [Staphylothermus marinus F1] gi|158513389|sp|A3DNV8|RFCL_STAMF RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|126014940|gb|ABN70318.1| replication factor C large subunit [Staphylothermus marinus F1] Length = 423 Score = 56.3 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 35/209 (16%), Positives = 74/209 (35%), Gaps = 37/209 (17%) Query: 53 VRLIDSWPSW-PSRVV-ILVGPSGSGKSCLANIWSDKSRSTRFS---------------N 95 ++ ++SW PS+ +L GP+G GK+ L +++ Sbjct: 30 IQWLESWLKGKPSKKAALLYGPAGCGKTSLVEAAANEYGLEIVEMNASDFRRRQDIERIA 89 Query: 96 IAKSLDSILIDTRKPVLLEDIDLLDFND-----TQLFHIINSIHQYDSSLLMTARTFPVS 150 + L K +LL+++D + + H++ ++MTA Sbjct: 90 KTAAFMRSLFARGKIILLDEVDGISGTADRGAIDAILHLLEITR---YPVVMTANNP--- 143 Query: 151 WGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 W L L A+ ++ + + V+ ++ ++ + I +R E L Sbjct: 144 WDQKLKPLR---DASLMIAFKRLSERDVIIVLKRICQLEKLECEDAALREIARRSEGDLR 200 Query: 211 FAEKLVDKMDNLALSRG-MGITRSLAAEV 238 A D A++ G +T + E+ Sbjct: 201 SAIN-----DLQAIAEGFGRVTLNWVREL 224 >gi|114766163|ref|ZP_01445167.1| transposion helper protein, ATP-binding protein [Pelagibaca bermudensis HTCC2601] gi|114541623|gb|EAU44665.1| transposion helper protein, ATP-binding protein [Roseovarius sp. HTCC2601] Length = 255 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 66/182 (36%), Gaps = 35/182 (19%) Query: 18 NDQPKNKEEQLFFS---FPRCLGISRDDLLVHSAIEQAV--RLIDSWPSW--PSRVVILV 70 +++ + Q + P+ + D L + QA L++ SW ++ Sbjct: 19 SEREQGPPTQRHLAAARLPQGKTLDAFDFLAVPTLSQARVRALVEGD-SWLQAGHNLLAF 77 Query: 71 GPSGSGKSCLANIWSDKSRSTRF------------------SNIAKSLDSILIDTRKPVL 112 GP GSGK+ LA + + ++A + + +D ++ Sbjct: 78 GPPGSGKTHLAGAIGYELIQRGYRVLMARTSDLVQRLQVARQDLALTQEIAKLDKFDLLI 137 Query: 113 LEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 L+D+ + + LF +I S S+++TA W PD +A T+ Sbjct: 138 LDDLSYVRKDQAETSALFELI-SARYERRSIMITANQPFSGWDAIFPD-----RAMTIAA 191 Query: 170 IS 171 I Sbjct: 192 ID 193 >gi|270701248|ref|ZP_06223060.1| chromosomal replication initiator protein DnaA [Haemophilus influenzae HK1212] gi|270315842|gb|EFA27945.1| chromosomal replication initiator protein DnaA [Haemophilus influenzae HK1212] Length = 141 Score = 55.9 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 38/84 (45%) Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 L SR I PD + +++K + + + +++A +I QR+ ++ E ++ Sbjct: 7 LKSRFGWGLTTAIEPPDLETRVAILLKKAEEHNMNLPEEVAFFIAQRLRTNVRELEGALN 66 Query: 218 KMDNLALSRGMGITRSLAAEVLKE 241 ++ + +G I + LK+ Sbjct: 67 RVKAMQDFKGGDIDIDFVRDTLKD 90 >gi|91775481|ref|YP_545237.1| recombination factor protein RarA [Methylobacillus flagellatus KT] gi|91709468|gb|ABE49396.1| Recombination protein MgsA [Methylobacillus flagellatus KT] Length = 440 Score = 55.9 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 46/196 (23%), Positives = 80/196 (40%), Gaps = 24/196 (12%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA + ++ + + F ++ L I E T Sbjct: 49 PSMILWGPPGVGKTTLARLIANTADAE-FIPLSAVLAGIKDIREAVERAEHTLQQSGRRT 107 Query: 125 QLF----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKIS 171 LF H N Q D+ L L+T A T S+ V L SR A V ++ Sbjct: 108 ILFVDEVHRFNK-GQQDAFLPFVESGLITFIGATTENPSFEVNSA-LLSR---AQVFVLN 162 Query: 172 LPDDDFLEKVIVKMFADRQIFID--KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229 +D L++++ + + Q+ I ++ ++ + V+ + N AL+ G Sbjct: 163 ALSEDELKQLLERGKQEMQLDIPLTPEVVEQVLGYADGDARRLLNFVEGLFNAALTAG-- 220 Query: 230 ITRSLAAEVLKETQQC 245 +T+ + AE L+ T Sbjct: 221 VTK-IDAEFLQSTMAS 235 >gi|301166665|emb|CBW26241.1| putative chromosomal replication initiator protein DnaA [Bacteriovorax marinus SJ] Length = 392 Score = 55.9 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 28/207 (13%), Positives = 75/207 (36%), Gaps = 22/207 (10%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLID---SWPSWPSRVVILV 70 K+ +N++ L + R + + + +A ++++ + + +++ + Sbjct: 55 AKRPKAITRNRKFSLPINVDRNKVFK--NFICGESNSRAYKVMESTLNSKNIDYQIIYIC 112 Query: 71 GPSGSGKSCLANIWSDK------------SRSTRFSNIAKSLDSILIDTRKPVLLEDIDL 118 SG GKS L ++ N +++ +D+ V ++D+D Sbjct: 113 SLSGLGKSHLLYATANALFEKTAKKICYFHGKEFIYNFDAQVEN--LDSIAAVFVDDLDE 170 Query: 119 L--DFNDTQLFHI-INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 + D + F + + + + + P + +R+ A V KI+ D Sbjct: 171 ITYDIDLQDRFSRNFDLLKRSGVQIFLAGSILPKHMKMANAKYANRVGGALVEKINKIDR 230 Query: 176 DFLEKVIVKMFADRQIFIDKKLAAYIV 202 D K++ + + ++ +V Sbjct: 231 DLASKILDNLSTIHNYQLSPDVSDLLV 257 >gi|261403496|ref|YP_003247720.1| AAA ATPase central domain protein [Methanocaldococcus vulcanius M7] gi|261370489|gb|ACX73238.1| AAA ATPase central domain protein [Methanocaldococcus vulcanius M7] Length = 509 Score = 55.9 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 70/176 (39%), Gaps = 26/176 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIA---------------KSLDSILIDTRKPV 111 ++LVGP G GK+ LA ++ A + S + + + Sbjct: 42 ILLVGPPGCGKTTLAYALANDYGFEVIELNASDKRNSSAIKKVVGHAATSSSIFGKKFLI 101 Query: 112 LLEDIDLLDFNDTQ--LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 +L+++D + + + +I I + + +++TA + + S L +++ Sbjct: 102 VLDEVDGISGKEDAGGVSELIKIIKKAKNPIILTANDAYATS------IRSLLPYVEIIQ 155 Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 ++ + + KV+ K+ + +D K I Q S ++ ++ LALS Sbjct: 156 LNPVHTNSIYKVLKKIAQKEGLDVDDKTLKMIAQH---SAGDLRSAINDLEALALS 208 >gi|237733411|ref|ZP_04563892.1| chromosomal replication initiator protein dnaA [Mollicutes bacterium D7] gi|229383446|gb|EEO33537.1| chromosomal replication initiator protein dnaA [Coprobacillus sp. D7] Length = 248 Score = 55.5 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 23/139 (16%), Positives = 48/139 (34%), Gaps = 26/139 (18%) Query: 38 ISRDDLLVHSAIEQAVR---LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST--- 91 ++ D+ +V S+ A L+ + P + + G GK+ L N + ++ Sbjct: 110 LTFDNFVVGSSNRMAQNAALLVSTNPGSNFNPLFIYSNPGLGKTHLLNAIGNYAKEVNPA 169 Query: 92 --------------RFSNIAKSLDSILIDTRK---PVLLEDIDLLDFNDTQ---LFHIIN 131 + + D K +L++DI L + FHI N Sbjct: 170 LRIRYITSKDFVDEVIGAMKGRDGDEIYDKYKNLDILLIDDIQFLFNKEKSSEIFFHIFN 229 Query: 132 SIHQYDSSLLMTARTFPVS 150 + + +++T+ P Sbjct: 230 ELINNNKQIVITSDKMPEE 248 >gi|89274040|dbj|BAE80735.1| DnaA protein [Spiroplasma sp. Dhd] gi|172052696|dbj|BAC56124.2| DnaA protein [Spiroplasma sp. NSRO] gi|172052698|dbj|BAC56125.2| DnaA protein [Spiroplasma sp. NSRO-A] gi|183582236|dbj|BAG28287.1| DnaA protein [Spiroplasma sp. NSRO] Length = 157 Score = 55.5 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 56/155 (36%), Gaps = 28/155 (18%) Query: 78 SCLANIWSDKSR-------------STRFSNIAKSL---DSILIDT-------RKPVLLE 114 + L + +K + F IA + +I+ +L++ Sbjct: 1 THLLHAIENKVNEIYKTNTRVKYLKANEFGKIAMDILNQGHEIIEAFKTSYDIYDCLLID 60 Query: 115 DIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 DI LL + FHI NS + + +++T+ +P G + SR + + Sbjct: 61 DIQLLAKRNKTNELFFHIFNSYIEKNKQIVITSDKYPDDLGGFEARIISRFSYGLSIGLD 120 Query: 172 LPD-DDFLEKVIVKMFADRQIFI-DKKLAAYIVQR 204 PD + L+ + K+ + + ++ +I Sbjct: 121 SPDFETALKILEQKLKYQNNLALFSEESLEFIALN 155 >gi|42559517|sp|Q975D4|RFCL_SULTO RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit Length = 440 Score = 55.5 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 41/217 (18%), Positives = 84/217 (38%), Gaps = 40/217 (18%) Query: 53 VRLIDSW----PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRF--------------- 93 V I+SW P+ + V+L GP G GK+ LA + + F Sbjct: 28 VEWIESWLKGKPN--YKAVLLYGPPGVGKTTLAEALARDYKLELFEMNASDSRNLNDIRT 85 Query: 94 -SNIAKSLDSILIDTRKPVLLEDIDLL-----DFNDTQLFHIINSIHQYDSSLLMTARTF 147 + A +I K +LL+++D L + +IN +++TA Sbjct: 86 MAERASITGTIFGIKGKLILLDEVDGLNARADAGAIDAILELINKTK---YPIILTANDP 142 Query: 148 PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER 207 W L L A ++++ L++++ K+ +I + + +I +E+ Sbjct: 143 ---WDPSLRPLR---NAVKMIELKRLTKYPLKRILKKICEAEKITCEDEALDFI---IEQ 193 Query: 208 SLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 S A ++ + +A G +T +A +++ + Sbjct: 194 SEGDARYAINMLQGVAEGYGR-VTLDMAKNLVRRKDR 229 >gi|330816938|ref|YP_004360643.1| AAA ATPase central domain protein [Burkholderia gladioli BSR3] gi|327369331|gb|AEA60687.1| AAA ATPase central domain protein [Burkholderia gladioli BSR3] Length = 467 Score = 55.5 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 77/185 (41%), Gaps = 27/185 (14%) Query: 67 VILVGPSGSGKSC----LANIWSDKS----RSTRFSNIAKSLDSILIDTRKPVLLEDIDL 118 ++L GP G+GK+ LA+ + + + + + + ++ + +++ED+DL Sbjct: 244 ILLYGPPGTGKTHIIRYLASNLEHHTTLLITAGQVAALDEYVNLAKLLQPCLIVIEDVDL 303 Query: 119 LDFN--------DTQLFH-IINSIH----QYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 + + + + + ++N + ++T P + R+ A Sbjct: 304 IGRDRTQMRETKEEAMLNRLLNEMDGLSPSAQLFFILTTNR-PDDIEDAIAGRPGRIDQA 362 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER-SLVFAEKLVDKMDNLAL 224 ++I +PDD+ +++ R + I +A V + S F ++LV ++ ++ Sbjct: 363 --IEIPVPDDECRLRLLE--LYGRAMEIPTDVAEAAVTKTTGVSAAFIKELVRRLAQQSI 418 Query: 225 SRGMG 229 RG Sbjct: 419 MRGSP 423 >gi|189500549|ref|YP_001960019.1| recombination factor protein RarA [Chlorobium phaeobacteroides BS1] gi|189495990|gb|ACE04538.1| AAA ATPase central domain protein [Chlorobium phaeobacteroides BS1] Length = 445 Score = 55.5 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 77/198 (38%), Gaps = 27/198 (13%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I GP GSGK+ LA I ++ RF +++ + + L LD T Sbjct: 62 PSMIFWGPPGSGKTTLAEICANSLD-FRFDSLSAVDAGVREVRKSLELAASAQRLDGLRT 120 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + +L+ A T S+ V L SR++ V ++ Sbjct: 121 LLFIDEIHRFNKAQQDSLLHAIEQGVVVLIGATTENPSFEVNAA-LMSRMQ---VYVLNA 176 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLA----AYIVQRMERSLVFAEKLVDKMDNLALSRGM 228 +D L+ V+ A + ++ A+++Q S A K ++ + ALS Sbjct: 177 LEDAALQAVVRCALAGDPLIAPYEVVIDDWAFLLQF---SAGDARKALNAV-EAALSMVD 232 Query: 229 GITRS--LAAEVLKETQQ 244 T L+ +L+ Q Sbjct: 233 LSTVPVHLSRTLLERVLQ 250 >gi|148377269|ref|YP_001256145.1| chromosomal replication initiation protein [Mycoplasma agalactiae PG2] gi|291319938|ref|YP_003515196.1| chromosomal replication initiator protein DnaA [Mycoplasma agalactiae] gi|148291315|emb|CAL58698.1| Chromosomal replication initiator protein DnaA [Mycoplasma agalactiae PG2] gi|290752267|emb|CBH40238.1| Chromosomal replication initiator protein DnaA [Mycoplasma agalactiae] Length = 466 Score = 55.5 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 37/242 (15%), Positives = 87/242 (35%), Gaps = 39/242 (16%) Query: 40 RDDLLVHSAIEQAVRL----IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN 95 ++ + + ++A+R+ ++ + + G SG GK+ L N ++ S Sbjct: 126 FENYVEGNFNKEAIRIAKLIVEGEED--YNPIFIYGKSGIGKTHLLNAICNELLKKEVSV 183 Query: 96 IAKSLDSILIDTRKPVL-------------LEDIDLLDFND-------------TQLFHI 129 + +S D + ++ D++ F+D +F+I Sbjct: 184 KYINANSFTRDISYFLQENDQRKLKQIRNHFDNADIVMFDDFQSYGIGNKKATIELIFNI 243 Query: 130 INSIHQYDSSLLMTARTFPVSW-GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 ++S + ++ + S L SRL + I P L K++ M Sbjct: 244 LDSRINQKRTTIICSDRPIYSLQNSFDARLISRLSMGLQLSIDEPQKADLLKILDYMIDI 303 Query: 189 RQIFI---DKKLAAYIVQRMERSLVFAEKLVDKM---DNLALSRGMGITRSLAAEVLKET 242 ++ + +IV+ S+ V+++ ++ + T ++ +LK+ Sbjct: 304 NKMTPELWEDDAKNFIVKNYANSIRSLIGAVNRLRFYNSEIVKTNSRYTLAIVNSILKDI 363 Query: 243 QQ 244 QQ Sbjct: 364 QQ 365 >gi|29541759|gb|AAO90698.1| ATPase, AAA family [Coxiella burnetii RSA 493] Length = 427 Score = 55.5 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 39/184 (21%), Positives = 67/184 (36%), Gaps = 31/184 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTR--FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP GSGK+ LA I + K+ + S + + I ++E + T Sbjct: 34 MILWGPPGSGKTTLAEIIAQKAGARVESISAVLAGVKDIRD------VVERAERHKGQAT 87 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + + L+ A T S+ + L SR + V + Sbjct: 88 ILFVDEVHGFNKSQQDAFLPHVEKGTITLIGATTENPSFQLNNA-LLSRTR---VYVLKQ 143 Query: 173 PDDDFLEKVIVKMFA--DRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 + L ++ A +R + I + L IVQ + L++ + + AL Sbjct: 144 LTEADLLSILENALANEERGLGKKALEIPEPLRRRIVQFADGDARQCLNLLEIIADFALE 203 Query: 226 RGMG 229 Sbjct: 204 ENGR 207 >gi|296108938|ref|YP_003615887.1| AAA ATPase central domain protein [Methanocaldococcus infernus ME] gi|295433752|gb|ADG12923.1| AAA ATPase central domain protein [Methanocaldococcus infernus ME] Length = 483 Score = 55.5 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 67/179 (37%), Gaps = 26/179 (14%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI---------------LIDTR 108 + ++L GP G GK+ LA ++ A S ++ R Sbjct: 39 EKPILLYGPPGVGKTTLAYALANDYGFDVIELNASDRRSREEIRRIIGQSAVSKSILGNR 98 Query: 109 KPVLLEDIDLLDFNDTQ--LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 ++L+++D + + + +I + + ++MTA P+L + L Sbjct: 99 FIIVLDEVDGISGKEDAGGVGELIKIAKESKNPIIMTANDAYS------PNLKNLLPHVE 152 Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 ++++ + + K++ + + +D K+ I S ++ + LALS Sbjct: 153 LIELKPLKVNEIYKILKAIAEKEGLDVDDKVLKVIASH---SAGDLRSAINDLQALALS 208 >gi|261856111|ref|YP_003263394.1| ATPase AAA [Halothiobacillus neapolitanus c2] gi|261836580|gb|ACX96347.1| AAA ATPase central domain protein [Halothiobacillus neapolitanus c2] Length = 433 Score = 55.2 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 37/195 (18%), Positives = 73/195 (37%), Gaps = 25/195 (12%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIA-----KSLDSILIDTRKPVLLEDIDLLDF 121 +IL GP G GK+ LA + + S+ + A K + + + + + + L LL Sbjct: 50 MILWGPPGVGKTTLARLMAKAFDSSFIALSAVFSGVKDIRAAMDEAERNLALGHPTLLFI 109 Query: 122 NDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 ++ H N + L+ A T S+ V L SR A V + Sbjct: 110 DEI---HRFNKAQQDALLPYAESGLVTLIGATTENPSFEVNSA-LLSR---AQVYVLKSL 162 Query: 174 DDDFLEKVIVKMFADRQ---IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM-G 229 DD L ++ D+ + D + ++ + L+++++ A + Sbjct: 163 SDDELR-LLFTRAQDKALGHLQFDPEAIDAVIGLADGDARRLLNLLEQLNTAASTSKRTQ 221 Query: 230 ITRSLAAEVLKETQQ 244 IT + L ++ + Sbjct: 222 ITTAFIDNALNQSTR 236 >gi|167957055|ref|ZP_02544129.1| recombination factor protein RarA [candidate division TM7 single-cell isolate TM7c] Length = 400 Score = 55.2 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 69/182 (37%), Gaps = 29/182 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSI-----------LIDTRKPVLL 113 +IL GP GSGK+ LA I + ++ + S + I + R + + Sbjct: 43 LILWGPPGSGKTTLARIIAKETEANFMELSAVTSGKKEINNIIEIARQNWNLQLRTVLFV 102 Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 ++I F HI + L+ A T S+ + P L SR+K V+ + Sbjct: 103 DEIHRFSKVQQDAFLPHI-----ESGLITLIGATTENPSFEIITP-LLSRVK---VMTLK 153 Query: 172 LPDDDFLEKVIVKMFA--DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229 +D +++++ K + + + Y+ + S A + ++ + Sbjct: 154 PLEDKDIQQILTKAIEKLAKSKLVTNESIEYLA-HI--SSGDARVALGNLELVLGINKGK 210 Query: 230 IT 231 IT Sbjct: 211 IT 212 >gi|21673587|ref|NP_661652.1| recombination factor protein RarA [Chlorobium tepidum TLS] gi|21646700|gb|AAM71994.1| ATPase, AAA family [Chlorobium tepidum TLS] Length = 451 Score = 55.2 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 37/191 (19%), Positives = 70/191 (36%), Gaps = 29/191 (15%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I GP GSGK+ LA I +S + RF ++ + + R L + +D Sbjct: 64 PSMIFWGPPGSGKTTLAEI-CARSLNYRFEQLSATDAGVKDVRRVLELAQKSRSIDGRQM 122 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + +L+ A T S+ V L SR++ V ++ Sbjct: 123 LLFIDEIHRFNKAQQDTLLHAIEQGLIVLIGATTENPSFEVNRA-LLSRMQ---VYILNP 178 Query: 173 PDDDFLEKVIVK------MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 + + +V+ + A + + +++ A K ++ + ALS Sbjct: 179 LSEAEVRRVVERAIESDPQLAAAGVEMRD--MEFLLAYA---AGDARKALNAL-EAALSL 232 Query: 227 GMGITRSLAAE 237 T + + Sbjct: 233 APRGTAPVVID 243 >gi|161830329|ref|YP_001597052.1| recombination factor protein RarA [Coxiella burnetii RSA 331] gi|161762196|gb|ABX77838.1| ATPase, AAA family [Coxiella burnetii RSA 331] Length = 440 Score = 55.2 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 39/184 (21%), Positives = 67/184 (36%), Gaps = 31/184 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTR--FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP GSGK+ LA I + K+ + S + + I ++E + T Sbjct: 47 MILWGPPGSGKTTLAEIIAQKAGARVESISAVLAGVKDIRD------VVERAERHKGQAT 100 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + + L+ A T S+ + L SR + V + Sbjct: 101 ILFVDEVHGFNKSQQDAFLPHVEKGTITLIGATTENPSFQLNNA-LLSRTR---VYVLKQ 156 Query: 173 PDDDFLEKVIVKMFA--DRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 + L ++ A +R + I + L IVQ + L++ + + AL Sbjct: 157 LTEADLLSILENALANEERGLGKKALEIPEPLRRRIVQFADGDARQCLNLLEIIADFALE 216 Query: 226 RGMG 229 Sbjct: 217 ENGR 220 >gi|229220692|ref|NP_820184.4| recombination factor protein RarA [Coxiella burnetii RSA 493] gi|30581044|sp|P39918|RARA_COXBU RecName: Full=Replication-associated recombination protein A Length = 440 Score = 55.2 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 39/184 (21%), Positives = 67/184 (36%), Gaps = 31/184 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTR--FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP GSGK+ LA I + K+ + S + + I ++E + T Sbjct: 47 MILWGPPGSGKTTLAEIIAQKAGARVESISAVLAGVKDIRD------VVERAERHKGQAT 100 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + + L+ A T S+ + L SR + V + Sbjct: 101 ILFVDEVHGFNKSQQDAFLPHVEKGTITLIGATTENPSFQLNNA-LLSRTR---VYVLKQ 156 Query: 173 PDDDFLEKVIVKMFA--DRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 + L ++ A +R + I + L IVQ + L++ + + AL Sbjct: 157 LTEADLLSILENALANEERGLGKKALEIPEPLRRRIVQFADGDARQCLNLLEIIADFALE 216 Query: 226 RGMG 229 Sbjct: 217 ENGR 220 >gi|15828472|ref|NP_325832.1| chromosomal replication initiation protein [Mycoplasma pulmonis UAB CTIP] gi|14089414|emb|CAC13174.1| CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA [Mycoplasma pulmonis] Length = 461 Score = 55.2 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 43/219 (19%), Positives = 83/219 (37%), Gaps = 40/219 (18%) Query: 37 GISRDDLLVHSAIEQAV----RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK----- 87 + D+ + E A +I++ V++ G SG GK+ L N ++ Sbjct: 119 KFTFDNFIQSKFNENAFLIGKEIIENP--GIYNPVLISGDSGLGKTHLLNAIGNEFLKKY 176 Query: 88 ----------SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIIN------ 131 S R S ++I + +K L + DL+ F+D Q+F I N Sbjct: 177 PKSIVKFLTPSDFYRKIMPILSSNNINENAKKFKELTEADLVMFDDFQIFSIGNKRATLN 236 Query: 132 --------SIHQYDSSLLMTARTFPVSW-GVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 I ++L T+ + L +RL + V+I P+ + + K++ Sbjct: 237 FIFEILDKRIMNNKVTIL-TSDKDLKFMASLFEQRLYTRLSSGLSVEIEQPNKEDMLKIL 295 Query: 183 VKMFADRQIFI---DKKLAAYIVQRMERSLVFAEKLVDK 218 + + +K ++V+ +S+ F E +DK Sbjct: 296 KFQLKIKNLSPEKWEKDALDFMVRNFSKSIRFLEGALDK 334 >gi|269123583|ref|YP_003306160.1| AAA ATPase central domain-containing protein [Streptobacillus moniliformis DSM 12112] gi|268314909|gb|ACZ01283.1| AAA ATPase central domain protein [Streptobacillus moniliformis DSM 12112] Length = 395 Score = 55.2 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 17/144 (11%) Query: 68 ILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125 I GPSG+GK+ LA I +DK + I S + I + K + LL F++ Sbjct: 46 IFFGPSGTGKTTLAKIIADKLGYDYVYLNAIKASKNDITQISLKAKNSVNKTLLFFDEI- 104 Query: 126 LFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 H N + + + +L+ A T + + L SR + + D++ Sbjct: 105 --HRFNKLQQDSLLEDLENGNIILIGATTENPYFSLNRA-LLSR---VLLFEFKKLDEED 158 Query: 178 LEKVIVKMFADRQIFIDKKLAAYI 201 + ++ K+ + Q+ + + YI Sbjct: 159 IFNILEKIAKEEQLEYKEDILKYI 182 >gi|222056545|ref|YP_002538907.1| ATPase AAA [Geobacter sp. FRC-32] gi|221565834|gb|ACM21806.1| AAA ATPase central domain protein [Geobacter sp. FRC-32] Length = 438 Score = 55.2 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 41/197 (20%), Positives = 76/197 (38%), Gaps = 32/197 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRF--SNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I GP GSGK+ LA + + + S S I + I ++ E++ T Sbjct: 55 LIFWGPPGSGKTTLARVIAGATSSHFIFFSAILSGIKEIREIVKEA---EEVRKFQGRRT 111 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + ++ A T S+ V P L SR V+ ++ Sbjct: 112 ILFVDEIHRFNKSQQDAFLPYVEKGVFTIIGATTENPSFEVIAP-LLSR---CKVLVLNT 167 Query: 173 PDDDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA-L 224 ++ L+K+I DR+ + I +Y+ E++ ++ ++ A L Sbjct: 168 LSEEELQKIIRNALTDRERGLGNLDLAITDDALSYMA---EQAGGDGRVALNTLETAARL 224 Query: 225 SRGMGITRSLAAEVLKE 241 + IT E +++ Sbjct: 225 AENGTITIENVREAVQK 241 >gi|114766036|ref|ZP_01445046.1| transposase [Pelagibaca bermudensis HTCC2601] gi|114541671|gb|EAU44711.1| transposase [Roseovarius sp. HTCC2601] Length = 289 Score = 55.2 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 66/181 (36%), Gaps = 32/181 (17%) Query: 16 QKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAV--RLIDSWPSW--PSRVVILVG 71 ++ +P ++ P+ + D L + QA L++ SW ++ G Sbjct: 54 EREQRPHSQRHLAAARLPQGKTLDAFDFLAVPTLSQARVRALVEGD-SWLQAGHNLLAFG 112 Query: 72 PSGSGKSCLANIWSDKSRSTRF------------------SNIAKSLDSILIDTRKPVLL 113 P GSGK+ LA + + ++A + + +D ++L Sbjct: 113 PPGSGKTHLAGAIGYELIQRGYRVLMARTSDLVQRLQVARQDLALTQEIAKLDKFDLLIL 172 Query: 114 EDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 +D+ + + LF +I S S+++TA W PD +A T+ I Sbjct: 173 DDLSYVRKDQAETSALFELI-SARYERRSIMITANQPFSGWDAIFPD-----RAMTIAAI 226 Query: 171 S 171 Sbjct: 227 D 227 >gi|85691113|ref|XP_965956.1| DNA helicase [Encephalitozoon cuniculi GB-M1] gi|19068523|emb|CAD24991.1| similarity to DNA HELICASE RUVB [Encephalitozoon cuniculi GB-M1] Length = 383 Score = 55.2 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 38/188 (20%), Positives = 75/188 (39%), Gaps = 38/188 (20%) Query: 51 QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI-----------WSDKSRSTRFSNIAKS 99 A+R + +PS R+++L GP G+GK+ LA++ ++ S S S I S Sbjct: 27 DALRWLRDYPS-NGRILLLCGPPGTGKTALAHVLSSVFGMNLVEFNASSDSEYVSKILDS 85 Query: 100 LDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYD--SSLLMTARTFPVSWGVCLPD 157 +I + +L+++ID + ++MT+ Sbjct: 86 GGTING-KKNLILVDEIDGNPLIEVG-----RLASSTRLAHPVVMTSNEV---------- 129 Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM-ERSLVFAEKLV 216 RLK ++I P D + + I ++ + I +D + + RM E S ++ Sbjct: 130 ---RLKDVYTLEIKRPGIDEIRRGIERICREEGIRVDNSV----LTRMVEDSGGDFRAII 182 Query: 217 DKMDNLAL 224 + + +L Sbjct: 183 NHLQMCSL 190 >gi|289192746|ref|YP_003458687.1| AAA ATPase central domain protein [Methanocaldococcus sp. FS406-22] gi|288939196|gb|ADC69951.1| AAA ATPase central domain protein [Methanocaldococcus sp. FS406-22] Length = 515 Score = 55.2 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 68/178 (38%), Gaps = 30/178 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI---------------LIDTRKPV 111 ++LVGP G GK+ LA ++ A S + + + Sbjct: 42 ILLVGPPGCGKTTLAYALANDYGFEVIELNASDKRSASVIKKVVGHAATSSSIFGKKFLI 101 Query: 112 LLEDIDLLDFNDTQ--LFHIINSIHQYDSSLLMTART--FPVSWGVCLPDLCSRLKAATV 167 +L+++D + + + +I I + + +++TA P + L V Sbjct: 102 ILDEVDGISGKEDAGGVSELIKVIKKAKNPIILTANDAYAPAIRNL--------LPYVEV 153 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 ++++ + + KV+ K+ + +D K I Q S ++ ++ LALS Sbjct: 154 IQLNPVHTNSVYKVLKKIAQKEGLDVDDKTLKMIAQH---SAGDLRSAINDLEALALS 208 >gi|224370722|ref|YP_002604886.1| putative ATPase [Desulfobacterium autotrophicum HRM2] gi|223693439|gb|ACN16722.1| putative ATPase [Desulfobacterium autotrophicum HRM2] Length = 451 Score = 55.2 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 63/180 (35%), Gaps = 24/180 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 IL GP G GK+ LA I + ++ S A I E + T + Sbjct: 57 TILWGPPGCGKTTLAGIIAKETSSHFMQLSAVLSGVKDIRAVIETAKEQ-RRIRGRRTLV 115 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N + + +L+ A T S+ V +P L SR V+ ++ Sbjct: 116 FVDEIHRFNKAQQDAFLHHVETGAIVLVGATTENPSFEV-IPALVSR---CRVITLNRLG 171 Query: 175 DDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 + + ++ + D R + + YI + + A ++ + A +R Sbjct: 172 ERDIVTILERAATDPVRGLGSLGIIFSAEALNYIAATADGDVRAALATLETIGVYASARK 231 >gi|303326103|ref|ZP_07356546.1| putative ATPase involved in DNA replication initiation [Desulfovibrio sp. 3_1_syn3] gi|302864019|gb|EFL86950.1| putative ATPase involved in DNA replication initiation [Desulfovibrio sp. 3_1_syn3] Length = 457 Score = 55.2 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 42/251 (16%), Positives = 79/251 (31%), Gaps = 56/251 (22%) Query: 33 PRCLGISRDDLLVHSAIE-------QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 P + D+ + A + +S +L G SG+GK+ L + Sbjct: 102 PDDARNAEDNFASFISNAKNAFPLAAAKEIAESDVGEAYNPFLLCGRSGTGKTHLLRALA 161 Query: 86 D----------KSRSTRFSNIAKSLDSILIDTRKPVLL------------EDIDLLDFND 123 SR N A+ R+P L +D+ Sbjct: 162 GSFARRGSGKTASRRIICQNAARFCAEDTPWARRPELFWQQCDALLLDDLQDLAGQAAWQ 221 Query: 124 TQLFHIINSI-------------------HQYDSSLLMTARTFPVSWGVCLPDL----CS 160 +L +++ ++ A P L DL S Sbjct: 222 QKLIACMDACPPAPRQNADVPTPVGMEYGLSDGPRQMVFAHAGPAQ---ALKDLDERLRS 278 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 RL++ VV++ PD D + + + +R++ + + Y+ QR + + L+ K+ Sbjct: 279 RLESGLVVELLEPDLDVRLRYLQALCKERRLNLGRDQLLYLAQRCAQ-FRLLQGLLLKVA 337 Query: 221 NLALSRGMGIT 231 A G +T Sbjct: 338 AFAAVHGRNLT 348 >gi|158522144|ref|YP_001530014.1| recombination factor protein RarA [Desulfococcus oleovorans Hxd3] gi|158510970|gb|ABW67937.1| AAA ATPase central domain protein [Desulfococcus oleovorans Hxd3] Length = 459 Score = 54.8 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 41/193 (21%), Positives = 75/193 (38%), Gaps = 35/193 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---D 123 +IL GP G GK+ LA I + + + A I ++E D Sbjct: 56 MILWGPPGCGKTTLARILAGMTGAAYVQISAVLSGVKEIRE----VVEAARRRRGEFQKD 111 Query: 124 TQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 T LF H N + L+ A T S+ V +P L SR ++ ++ Sbjct: 112 TILFVDEVHRFNKSQQDAFLPHVESGLVTLIGATTENPSFEV-IPALMSR---CRLIVLN 167 Query: 172 LPDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 ++ + +V+++ AD + I+ + A++ + ++ ++ AL Sbjct: 168 PVPEEAVRQVLLRALADTEKGLGKMGLEIEPEALAHLAALAD---GDVRTALNNLEAAAL 224 Query: 225 SR--GMGITRSLA 235 R G G+T +LA Sbjct: 225 LRPAGTGVTITLA 237 >gi|194246591|ref|YP_002004230.1| Chromosomal replication initiator protein [Candidatus Phytoplasma mali] gi|254777910|sp|B3R0L6|DNAA_PHYMT RecName: Full=Chromosomal replication initiator protein DnaA gi|193806948|emb|CAP18380.1| Chromosomal replication initiator protein [Candidatus Phytoplasma mali] Length = 455 Score = 54.8 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 24/164 (14%), Positives = 55/164 (33%), Gaps = 26/164 (15%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPS---RVVILVGPSGSGKSCLANIWSDKSRSTRF 93 + + ++ + + A + + + G G GK+ L + +K Sbjct: 106 KYNFKNFIIGESNKFAFEMSKKISENKEIKINPLYIFGNVGLGKTHLLHSIGNKIIKNNK 165 Query: 94 SN--IAKSLDSILIDTRKPVLLE----------DIDLLDFNDTQ-----------LFHII 130 + D + D + E +ID+L +D Q F + Sbjct: 166 DKKVLYVKADEFIEDFINQLKEEKIENFKLKYRNIDVLLMDDIQIMSEAKRTQIEFFKLF 225 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 + ++ + +++T+ + L SR +A ++ I PD Sbjct: 226 DYLYLNNKQIVITSDKNTSELKNIMSRLISRFEAGLIIDIKKPD 269 >gi|116874488|gb|ABK30887.1| DnaA [Mycoplasma imitans] Length = 461 Score = 54.8 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 40/208 (19%), Positives = 72/208 (34%), Gaps = 41/208 (19%) Query: 29 FFSFPRCLGISRDDLLVHSAIEQAVRL--------IDSWPSWPSRVVILVGPSGSGKSCL 80 S + + LV +AV L IDS +W +I+ G G GKS L Sbjct: 116 PLSRGIKEKYNFSNYLVFEFNREAVYLAKQIAEKTIDS--NW--NPIIIEGKPGYGKSHL 171 Query: 81 ANIWSDKSR--------STRFSNIAKSLDSILIDTRKPVLLE-------DIDLLDFND-- 123 +++ + S+ S + P +E D DLL +D Sbjct: 172 LQAIANERQKLFPEEKICVLSSDDFGSEFLKSVIAPDPTHIESFKSKYKDYDLLMIDDVQ 231 Query: 124 ---------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL-PDLCSRLKAATVVKISLP 173 F I NS+ ++++T L + SR + V+I+ P Sbjct: 232 IISNRPKTNETFFTIFNSLVDQKKTIVITLDCKIEEIQDKLNARMISRFQRGINVRINQP 291 Query: 174 DDDFLEKVIVKMFADRQIF--IDKKLAA 199 + + + K+ + F + + +D + Sbjct: 292 NKNEIIKIFKQKFKENNLEKYMDDHVIE 319 >gi|262196587|ref|YP_003267796.1| ATPase AAA [Haliangium ochraceum DSM 14365] gi|262079934|gb|ACY15903.1| AAA ATPase central domain protein [Haliangium ochraceum DSM 14365] Length = 463 Score = 54.8 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 41/217 (18%), Positives = 85/217 (39%), Gaps = 44/217 (20%) Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTR--FSNIAKSLDSILIDTRKP------- 110 P +IL GP G+GK+ LA+I + ++ S S + + + + Sbjct: 47 PGAALPSLILWGPPGTGKTTLAHILATRAGSRLAAISAVTAGVREMRQLVSEAGDRRDQF 106 Query: 111 -----VLLEDIDLL--DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 + +++I D L H+ + + L+ A T S+ V L SR Sbjct: 107 GSRTVLFIDEIHRFSKAQQDALLPHV-----EAGTVTLIGATTENPSFHVNAA-LLSR-- 158 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLV 216 V+++ D+ L + + +DR+ + + ++ +V + S A +++ Sbjct: 159 -CRVLRLGALSDEELGALARRALSDRERGLGRAAVSVSDEVLTDLVAQ---SGGDARRML 214 Query: 217 DKMDNL-ALSRGMGIT--------RSLAAEVLKETQQ 244 + ++ +L RG R+L E ++E Q Sbjct: 215 NALEVAVSLVRGGEGEGEDEDEAPRALGREAIEEALQ 251 >gi|332796205|ref|YP_004457705.1| AAA ATPase central domain-containing protein [Acidianus hospitalis W1] gi|332693940|gb|AEE93407.1| AAA ATPase central domain protein [Acidianus hospitalis W1] Length = 450 Score = 54.8 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 39/211 (18%), Positives = 75/211 (35%), Gaps = 32/211 (15%) Query: 54 RLIDSWPSW-PSRV-VILVGPSGSGKSCLANIWSDKSRSTR----------------FSN 95 R I+SW S P ++L GP G+GK+ LA + + Sbjct: 29 RWIESWLSGKPENKALLLYGPPGTGKTTLAQALAHDYGLELLEMNASDSRNLEAIKNIAQ 88 Query: 96 IAKSLDSILIDTRKPVLLEDIDLLDFNDT--QLFHIINSIHQYDSSLLMTARTFPVSWGV 153 A S+ K + L+++D ++ + I + + +L+ A W Sbjct: 89 RAAVSGSLFGTKGKLIFLDEVDGINARQDMGAIPAIAELVQKTRYPVLLAANDP---WDP 145 Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213 L +L A +V++ L K++ K+ ++ D I +E S A Sbjct: 146 SLRELR---NLAKLVEVKKLGKYALRKILGKICTSEKLQCDDDALDEI---IEISDGDAR 199 Query: 214 KLVDKMDNLALSRG-MGITRSLAAEVLKETQ 243 ++ + A + G +T E + + Sbjct: 200 YAINLL--EATAEGFKKVTVESVKEFARRKE 228 >gi|170290624|ref|YP_001737440.1| DNA replication ATPase HolB large subunit [Candidatus Korarchaeum cryptofilum OPF8] gi|170174704|gb|ACB07757.1| ATPase involved in DNA replication HolB, large subunit [Candidatus Korarchaeum cryptofilum OPF8] Length = 382 Score = 54.8 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 67/173 (38%), Gaps = 31/173 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS---------------ILIDTRKPV 111 +++VGP G+GK+ A+ +++ A L +L R+ + Sbjct: 10 LLIVGPPGTGKTSAAHAIANELNYDAIEVNASDLRDRTHLQYIVESSGAVSLLSGKRRLI 69 Query: 112 LLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC-----SRLKAAT 166 +L++ID L + ++ + ++MTA + +L SR++ + Sbjct: 70 ILDEIDALPGEGHAIASLVKELISKGIPIVMTANDPYERHLYEIRNLSMMVKFSRVRWQS 129 Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 VV + L+ + K + + +++ I + + L A ++ + Sbjct: 130 VVSV-------LKDICRKE----GLSVPEEVLNKIAKSCQGDLRAAINDLEGL 171 >gi|118473523|ref|YP_887339.1| recombination factor protein RarA [Mycobacterium smegmatis str. MC2 155] gi|118174810|gb|ABK75706.1| AAA ATPase, central region [Mycobacterium smegmatis str. MC2 155] Length = 447 Score = 54.8 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 37/195 (18%), Positives = 75/195 (38%), Gaps = 31/195 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVL--------L 113 VIL GP G+GK+ LA++ S + + K + +++ R+ + + Sbjct: 68 VILYGPPGTGKTTLASLISQATGRRFEALSALTAGVKEVRAVIDTARRAAVHGQQTVLFI 127 Query: 114 EDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +++ L + + LL+ A T S+ V P L SR + ++++ Sbjct: 128 DEVHRFSKTQQDALL----AAVENRVVLLVAATTENPSFSVVAP-LLSR---SLILQLQP 179 Query: 173 PDDDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 +E V+ + D R + + + IVQ S A + + ++ A G Sbjct: 180 LTPADIEAVLRRAITDERGLGGRVEVTDEAVDLIVQ---LSAGDARRALTALEVAA-EPG 235 Query: 228 MGITRSLAAEVLKET 242 +T + L + Sbjct: 236 ERVTVETIEQSLDKA 250 >gi|296120806|ref|YP_003628584.1| ATPase AAA [Planctomyces limnophilus DSM 3776] gi|296013146|gb|ADG66385.1| AAA ATPase central domain protein [Planctomyces limnophilus DSM 3776] Length = 432 Score = 54.8 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 39/203 (19%), Positives = 80/203 (39%), Gaps = 42/203 (20%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS-----LDSILIDTRKPVLLEDIDLLDF 121 V+ GP G GK+ LA + + S+ + A + L L ++R+ + Sbjct: 55 VVFYGPPGVGKTTLAELIAKSSKRRFIALNAAATGVKELREALDESRERL------KSSG 108 Query: 122 NDTQLF----HIINSIHQY--------DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 T LF H N Q L+ A T + + P L SR + + + Sbjct: 109 TKTLLFVDELHHFNKQQQNVLLPDVEQGVVSLVAATTANPFFALIAP-LLSR---SQIFE 164 Query: 170 ISLPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRME----RSLVFAEKLVDK 218 + + ++ V+ + +D R + + +++ ++ + R+L+ E V+ Sbjct: 165 LKPLSTEEIKAVLRQALSDETRGYGQKNLKVPEEVFDFLAASSDGDARRALLALEIAVES 224 Query: 219 MDNLALSRGMGITRSLAAEVLKE 241 +D+ L +T +A E L++ Sbjct: 225 LDSRVLE----LTLEIAQESLQK 243 >gi|258546040|ref|ZP_05706274.1| replication-associated recombination protein A [Cardiobacterium hominis ATCC 15826] gi|258518697|gb|EEV87556.1| replication-associated recombination protein A [Cardiobacterium hominis ATCC 15826] Length = 457 Score = 54.8 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 68/177 (38%), Gaps = 23/177 (12%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRF-------------SNIAKSLDSILIDTRKPVLL 113 ++L GP G GK+ LA + +D + +A++ I + + + Sbjct: 70 MLLWGPPGCGKTTLALLLADAFDARYIRLSAVFSGVKEVREAVAQAQQERAIGRKTILFI 129 Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 ++I + F + + +L+ A T ++ + L SRL+ V + Sbjct: 130 DEIHRFNKAQQDAFLPY---VEDGTLILIGATTENPAFNLNNA-LLSRLR---VFHLKPL 182 Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 +D L + + + A + D+ A + + A K + ++ AL R GI Sbjct: 183 SEDELAEKLRRGLAALGLEADEPAIATLAYQAG---GDARKAIGWLEEWALLRRQGI 236 >gi|119355865|ref|YP_910509.1| IstB ATP binding domain-containing protein [Chlorobium phaeobacteroides DSM 266] gi|119355927|ref|YP_910571.1| IstB ATP binding domain-containing protein [Chlorobium phaeobacteroides DSM 266] gi|119356118|ref|YP_910762.1| IstB ATP binding domain-containing protein [Chlorobium phaeobacteroides DSM 266] gi|119356169|ref|YP_910813.1| IstB ATP binding domain-containing protein [Chlorobium phaeobacteroides DSM 266] gi|119356478|ref|YP_911122.1| IstB ATP binding domain-containing protein [Chlorobium phaeobacteroides DSM 266] gi|119356956|ref|YP_911600.1| IstB ATP binding domain-containing protein [Chlorobium phaeobacteroides DSM 266] gi|119357093|ref|YP_911737.1| IstB ATP binding domain-containing protein [Chlorobium phaeobacteroides DSM 266] gi|119357158|ref|YP_911802.1| IstB ATP binding domain-containing protein [Chlorobium phaeobacteroides DSM 266] gi|119357259|ref|YP_911903.1| IstB ATP binding domain-containing protein [Chlorobium phaeobacteroides DSM 266] gi|119357358|ref|YP_912002.1| IstB ATP binding domain-containing protein [Chlorobium phaeobacteroides DSM 266] gi|119357549|ref|YP_912193.1| IstB ATP binding domain-containing protein [Chlorobium phaeobacteroides DSM 266] gi|119357834|ref|YP_912478.1| IstB ATP binding domain-containing protein [Chlorobium phaeobacteroides DSM 266] gi|119357903|ref|YP_912547.1| IstB ATP binding domain-containing protein [Chlorobium phaeobacteroides DSM 266] gi|119357958|ref|YP_912602.1| IstB ATP binding domain-containing protein [Chlorobium phaeobacteroides DSM 266] gi|119357990|ref|YP_912634.1| IstB ATP binding domain-containing protein [Chlorobium phaeobacteroides DSM 266] gi|119358079|ref|YP_912723.1| IstB ATP binding domain-containing protein [Chlorobium phaeobacteroides DSM 266] gi|119358091|ref|YP_912735.1| IstB ATP binding domain-containing protein [Chlorobium phaeobacteroides DSM 266] gi|119358151|ref|YP_912795.1| IstB ATP binding domain-containing protein [Chlorobium phaeobacteroides DSM 266] gi|119358335|ref|YP_912979.1| IstB ATP binding domain-containing protein [Chlorobium phaeobacteroides DSM 266] gi|119358416|ref|YP_913060.1| IstB ATP binding domain-containing protein [Chlorobium phaeobacteroides DSM 266] gi|119358423|ref|YP_913067.1| IstB ATP binding domain-containing protein [Chlorobium phaeobacteroides DSM 266] gi|119353214|gb|ABL64085.1| IstB domain protein ATP-binding protein [Chlorobium phaeobacteroides DSM 266] gi|119353276|gb|ABL64147.1| IstB domain protein ATP-binding protein [Chlorobium phaeobacteroides DSM 266] gi|119353467|gb|ABL64338.1| IstB domain protein ATP-binding protein [Chlorobium phaeobacteroides DSM 266] gi|119353518|gb|ABL64389.1| IstB domain protein ATP-binding protein [Chlorobium phaeobacteroides DSM 266] gi|119353827|gb|ABL64698.1| IstB domain protein ATP-binding protein [Chlorobium phaeobacteroides DSM 266] gi|119354305|gb|ABL65176.1| IstB domain protein ATP-binding protein [Chlorobium phaeobacteroides DSM 266] gi|119354442|gb|ABL65313.1| IstB domain protein ATP-binding protein [Chlorobium phaeobacteroides DSM 266] gi|119354507|gb|ABL65378.1| IstB domain protein ATP-binding protein [Chlorobium phaeobacteroides DSM 266] gi|119354608|gb|ABL65479.1| IstB domain protein ATP-binding protein [Chlorobium phaeobacteroides DSM 266] gi|119354707|gb|ABL65578.1| IstB domain protein ATP-binding protein [Chlorobium phaeobacteroides DSM 266] gi|119354898|gb|ABL65769.1| IstB domain protein ATP-binding protein [Chlorobium phaeobacteroides DSM 266] gi|119355183|gb|ABL66054.1| IstB domain protein ATP-binding protein [Chlorobium phaeobacteroides DSM 266] gi|119355252|gb|ABL66123.1| IstB domain protein ATP-binding protein [Chlorobium phaeobacteroides DSM 266] gi|119355307|gb|ABL66178.1| IstB domain protein ATP-binding protein [Chlorobium phaeobacteroides DSM 266] gi|119355339|gb|ABL66210.1| IstB domain protein ATP-binding protein [Chlorobium phaeobacteroides DSM 266] gi|119355428|gb|ABL66299.1| IstB domain protein ATP-binding protein [Chlorobium phaeobacteroides DSM 266] gi|119355440|gb|ABL66311.1| IstB domain protein ATP-binding protein [Chlorobium phaeobacteroides DSM 266] gi|119355500|gb|ABL66371.1| IstB domain protein ATP-binding protein [Chlorobium phaeobacteroides DSM 266] gi|119355684|gb|ABL66555.1| IstB domain protein ATP-binding protein [Chlorobium phaeobacteroides DSM 266] gi|119355765|gb|ABL66636.1| IstB domain protein ATP-binding protein [Chlorobium phaeobacteroides DSM 266] gi|119355772|gb|ABL66643.1| IstB domain protein ATP-binding protein [Chlorobium phaeobacteroides DSM 266] Length = 278 Score = 54.8 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 51/112 (45%), Gaps = 22/112 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDTR 108 +IL+GPSG+GKS LA ++ + + +++D ++ + + Sbjct: 104 LILIGPSGTGKSYLAGGLCHEALKLGYHALFRTMDDLIQTIRFKEITAAAAREYKRLLSA 163 Query: 109 KPVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 ++++DI + + LF ++N +H+ +S ++T P W L D Sbjct: 164 HLLVIDDIMMFPLEKSVAVGLFQLVNQLHE-QTSFIITTNKSPKEWAEMLGD 214 >gi|330822346|ref|YP_004362567.1| AAA ATPase central domain protein [Burkholderia gladioli BSR3] gi|327374183|gb|AEA65537.1| AAA ATPase central domain protein [Burkholderia gladioli BSR3] Length = 483 Score = 54.4 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 41/199 (20%), Positives = 85/199 (42%), Gaps = 27/199 (13%) Query: 67 VILVGPSGSGKSC----LANIWSDKS----RSTRFSNIAKSLDSILIDTRKPVLLEDIDL 118 ++L GP G+GK+ LA+ + + + + +A + + V++ED+DL Sbjct: 258 ILLYGPPGTGKTHTIKYLASNLPGHTTLLISADQVALLANYMQLARLLQPSMVVIEDVDL 317 Query: 119 LDFN--------DTQLFH-IINS---IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 + + + L + ++N +HQ L + P L R+ A Sbjct: 318 IGRHRNEMRGPAEESLLNRLLNEMDGLHQDAEILFVLTTNRPEEIEEALSARPGRVDQA- 376 Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER-SLVFAEKLVDKMDNLALS 225 +++ PD D +++ A Q+ I + A +V++ E S F ++LV ++ +++ Sbjct: 377 -IEVPAPDADCRTRLLQLYGA--QMSISSDVIAILVEQTEGVSAAFIKELVRRLAQQSIA 433 Query: 226 RG--MGITRSLAAEVLKET 242 R I A VL++ Sbjct: 434 RKAQGKINMQDAENVLRDM 452 >gi|189425566|ref|YP_001952743.1| recombination factor protein RarA [Geobacter lovleyi SZ] gi|189421825|gb|ACD96223.1| AAA ATPase central domain protein [Geobacter lovleyi SZ] Length = 435 Score = 54.4 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 44/211 (20%), Positives = 84/211 (39%), Gaps = 40/211 (18%) Query: 55 LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--SRSTRFSNIAKSLDSILIDTRKPVL 112 +I++ +I GP G GK+ LA+I + + SR FS I + I + Sbjct: 44 MIEADQ---LPSMIFWGPPGCGKTTLAHIIAHETSSRFVFFSAIMAGVKEIRE------I 94 Query: 113 LEDIDLLDFNDTQ--LF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDL 158 +D + T+ LF H N + ++ A T S+ V P L Sbjct: 95 FKDAEAYAAGGTRTILFVDEIHRFNKAQQDAFLPAVEKGLVTIIGATTENPSFEVIAP-L 153 Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVF 211 SR V+++ + D L ++ K D Q+ I+ + ++ E + Sbjct: 154 LSR---CRVLRLKQLEADELATLLQKTLQDTEKGLGGLQLAIEDEALTFL---SEAAQGD 207 Query: 212 AEKLVDKMDNLA-LSRGMGITRSLAAEVLKE 241 K ++ ++ A L++ I+ +A E +++ Sbjct: 208 GRKALNTLEVAAGLAQDGLISLEIAQEAMQQ 238 >gi|193212966|ref|YP_001998919.1| recombination factor protein RarA [Chlorobaculum parvum NCIB 8327] gi|193086443|gb|ACF11719.1| AAA ATPase central domain protein [Chlorobaculum parvum NCIB 8327] Length = 452 Score = 54.4 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 37/200 (18%), Positives = 74/200 (37%), Gaps = 31/200 (15%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I GP GSGK+ LA I + RF ++ + + R + + +D Sbjct: 65 PSMIFWGPPGSGKTTLAEICAGSLN-YRFEQLSATDAGVKDVRRVLEVAQKSRSIDGRQM 123 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + +L+ A T S+ V L SR++ V ++ Sbjct: 124 LLFIDEIHRFNKAQQDTLLHAIEQGLIVLIGATTENPSFEVNRA-LLSRMQ---VYILNP 179 Query: 173 PDDDFLEKVIVK------MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 + +++V+ + A + + +++ A K ++ + ALS Sbjct: 180 LSEAEVQRVVERAIGSDPQLAAAGVEVRD--MEFLLAYA---AGDARKALNAL-EAALSL 233 Query: 227 GMGITRSLA--AEVLKETQQ 244 T + ++L++ Q Sbjct: 234 APLGTAPMVIDRKLLEQALQ 253 >gi|227889971|ref|ZP_04007776.1| crossover junction endodeoxyribonuclease [Lactobacillus johnsonii ATCC 33200] gi|227849415|gb|EEJ59501.1| crossover junction endodeoxyribonuclease [Lactobacillus johnsonii ATCC 33200] Length = 426 Score = 54.4 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 40/191 (20%), Positives = 73/191 (38%), Gaps = 26/191 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSR------STRFSNIAKSLDSILIDTRKPVL--LEDIDL 118 ++L GP G+GK+ LA I + + + N AK + I + + +++I Sbjct: 44 LLLWGPPGTGKTSLAQIIAREYDYPLATFNASIDNKAKLMQIINTYPYQSFVLLIDEIHR 103 Query: 119 --LDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 D L ++ + LL+ A T + P + SR + + DD Sbjct: 104 MTTTLQDYLLPYL-----ESGKILLIGATTENPIMSIV-PAVRSR---CQIFEFETLDDK 154 Query: 177 FLEKVIVKM----FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232 + +V+V+ F + IDK+ I + + L A L++ + G I+ Sbjct: 155 DISEVLVRALKEVFHLDEKQIDKEAINIIARSADGDLRVALNLLETIQA---VNGEEISV 211 Query: 233 SLAAEVLKETQ 243 E LK Sbjct: 212 KNVKEFLKGQH 222 >gi|152993934|ref|YP_001359655.1| recombination factor protein RarA [Sulfurovum sp. NBC37-1] gi|151425795|dbj|BAF73298.1| ATPase, AAA family [Sulfurovum sp. NBC37-1] Length = 393 Score = 54.4 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 24/184 (13%), Positives = 72/184 (39%), Gaps = 21/184 (11%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------DSILIDTRKPVLLE 114 + L GP G GK+ LA I + + + A +L + + + ++ Sbjct: 39 PHIFLYGPPGCGKTTLARIIATQLGRPFYEMNATTLKIDDLRKIFKEYANALQKPLIFID 98 Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 ++ L N ++ + +++L++ A T + + + SR + + ++ Sbjct: 99 EVHRLSKNQQEVLLPF---MENNAALVIGASTENPYYSLTAA-MRSR---SHLFELEALK 151 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234 ++ + K+ A + + +++ Y+V S +++ +++ + +T Sbjct: 152 QKEMQDYLAKIIALQAMDVEEDAVEYLVFS---SGGDVRAMLNLLESAQMVA-TPVTLET 207 Query: 235 AAEV 238 ++ Sbjct: 208 LKQI 211 >gi|310823298|ref|YP_003955656.1| ATPase [Stigmatella aurantiaca DW4/3-1] gi|309396370|gb|ADO73829.1| AAA ATPase [Stigmatella aurantiaca DW4/3-1] Length = 443 Score = 54.4 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 42/194 (21%), Positives = 76/194 (39%), Gaps = 25/194 (12%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G+GK+ LA + + + + F +++ L + ++ L T Sbjct: 53 PSLILWGPPGTGKTTLARVIAQATGA-SFESLSAVLSGVKDIRETVARAQERWRLHRQRT 111 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + + L+ A T S+ V L SR A VV + Sbjct: 112 LLFIDEIHRFNKSQQDALLPHVEKGTVTLIGATTENPSFEVNAA-LLSR---ARVVTLRG 167 Query: 173 PDDDFLEKVIVKM-FADRQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 +++ L V+ + A + + +D + +I Q A K + ++ A G Sbjct: 168 LEEEELVGVLRRAVVAPKGLGGKVQVDDEALQFIAQAAG---GDARKALTALEVAASYGG 224 Query: 228 MGITRSLAAEVLKE 241 + R A E L++ Sbjct: 225 SQVNRQAAEEALQQ 238 >gi|291534006|emb|CBL07119.1| ATPase related to the helicase subunit of the Holliday junction resolvase [Megamonas hypermegale ART12/1] Length = 372 Score = 54.4 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 76/192 (39%), Gaps = 40/192 (20%) Query: 67 VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL------ 118 +IL GP G+GK+ LA + + KS +R + ++ + + ++E D Sbjct: 1 MILYGPPGTGKTTLAKMIAGMTKSEFSRLNAVSAGISDVRK------IIEKADENRRYYR 54 Query: 119 ----LDFNDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 + ++ H N + +L+ A T + V L SR++ Sbjct: 55 KRTIIFLDEI---HRFNKAQQDVLLPYVEDGRIILIGATTENPYFEVNHA-LLSRVR--- 107 Query: 167 VVKISLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKM 219 VVK+ L D+ L ++ D R + D ++ + I Q A +++++ Sbjct: 108 VVKLELLDEQNLIDILKVALEDKVRGLGKYEFKYDDEVLSIIAQYAGGDARVALNILEQV 167 Query: 220 DNLALSRGMGIT 231 ++AL + I Sbjct: 168 GDVALEQNHNIN 179 >gi|119356882|ref|YP_911526.1| IstB ATP binding domain-containing protein [Chlorobium phaeobacteroides DSM 266] gi|119354231|gb|ABL65102.1| IstB domain protein ATP-binding protein [Chlorobium phaeobacteroides DSM 266] Length = 210 Score = 54.4 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 22/112 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL----------IDTRKPVLLEDI 116 +IL+GPSG+GKS LA ++ + + +++D ++ R+ L Sbjct: 36 LILIGPSGTGKSYLAGGLCHEALKLGYHALFRTMDELIQTIRFKDVTTAAAREYKRLVHA 95 Query: 117 DLLDFNDT-----------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 LL +D LF +IN +H+ +S ++T P W L D Sbjct: 96 HLLVIDDIMMFPLEKSVAVGLFQLINQLHE-QTSFIITTNKNPKEWAEMLGD 146 >gi|298243589|ref|ZP_06967396.1| IstB domain protein ATP-binding protein [Ktedonobacter racemifer DSM 44963] gi|297556643|gb|EFH90507.1| IstB domain protein ATP-binding protein [Ktedonobacter racemifer DSM 44963] Length = 587 Score = 54.4 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 58/172 (33%), Gaps = 40/172 (23%) Query: 45 VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK----------------- 87 V A A+ W ++LVGP+G GK+ L + + Sbjct: 426 VSEAYGAALEFARDPQGW----LLLVGPNGCGKTHLGLAIAHQRLEAGDVVLFSVVPDLL 481 Query: 88 --SRSTRFSNIAKSLDSILIDTRKP--VLLEDIDLLDFND---TQLFHIINSIHQYDSSL 140 R+ N + D + R+ ++L+D+ + +LF ++N + Sbjct: 482 DHLRAAFAPNATEVYDQLFSKMREAGVLILDDLGAQQSSQWAKEKLFQLLNYRYNMSMPT 541 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 ++TA P + SRL D + +V + D ++ Sbjct: 542 VITAN--PKGLQDIDERIRSRLG----------DISLVRRVNMNQAHDYRVV 581 >gi|15920689|ref|NP_376358.1| replication factor C large subunit [Sulfolobus tokodaii str. 7] gi|15621472|dbj|BAB65467.1| 413aa long hypothetical replication factor C large subunit [Sulfolobus tokodaii str. 7] Length = 413 Score = 54.0 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 40/216 (18%), Positives = 83/216 (38%), Gaps = 40/216 (18%) Query: 54 RLIDSW----PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRF---------------- 93 I+SW P+ + V+L GP G GK+ LA + + F Sbjct: 2 EWIESWLKGKPN--YKAVLLYGPPGVGKTTLAEALARDYKLELFEMNASDSRNLNDIRTM 59 Query: 94 SNIAKSLDSILIDTRKPVLLEDIDLL-----DFNDTQLFHIINSIHQYDSSLLMTARTFP 148 + A +I K +LL+++D L + +IN +++TA Sbjct: 60 AERASITGTIFGIKGKLILLDEVDGLNARADAGAIDAILELINKTK---YPIILTANDP- 115 Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 W L L A ++++ L++++ K+ +I + + +I +E+S Sbjct: 116 --WDPSLRPLR---NAVKMIELKRLTKYPLKRILKKICEAEKITCEDEALDFI---IEQS 167 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 A ++ + +A G +T +A +++ + Sbjct: 168 EGDARYAINMLQGVAEGYGR-VTLDMAKNLVRRKDR 202 >gi|325968176|ref|YP_004244368.1| ATPase AAA [Vulcanisaeta moutnovskia 768-28] gi|323707379|gb|ADY00866.1| AAA ATPase central domain protein [Vulcanisaeta moutnovskia 768-28] Length = 435 Score = 54.0 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 34/200 (17%), Positives = 76/200 (38%), Gaps = 30/200 (15%) Query: 53 VRLIDSWPSW-PSRVVI-LVGPSGSGKSCLANIWSDKSRS----------------TRFS 94 + I+SW PSR + LVG G+GK+ LA +++ + Sbjct: 30 LDWINSWEKGKPSRKAVMLVGSPGTGKTTLAYALANEKGYEVLELNASDVRTGERIRQII 89 Query: 95 NIAKSLDSILIDTRKPVLLEDIDLLDFNDT--QLFHIINSIHQYDSSLLMTARTFPVSWG 152 + + S+ + +L +++D L+ + L I+ I + ++MTA W Sbjct: 90 GGSMKMGSLFGFRGRIILFDEVDGLNVREDRGGLAAIVELIRESTWPIIMTANNP---WD 146 Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 +L A V+++ ++ + ++ ++ + I ++ I E S Sbjct: 147 PKFRELR---DEAEVIQLKPLRENDILTILRRICNNEGIKCEEDALKLIA---EASGGDV 200 Query: 213 EKLVDKMDNLALSRGMGITR 232 ++ + A +T+ Sbjct: 201 RAAINDL-QAAAEGKKVLTK 219 >gi|268611321|ref|ZP_06145048.1| chromosomal replication initiator protein DnaA [Ruminococcus flavefaciens FD-1] Length = 338 Score = 54.0 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 23/143 (16%), Positives = 47/143 (32%), Gaps = 25/143 (17%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRV-VILVGPSGSGKSCLA----NIWSDKSRST 91 + D V A A + + + G + +GK+ L N S Sbjct: 9 KYTFDSFAVTDANRTAFEKAKLFAENADSKPLAIFGATATGKTHLLYAVKNAIEQNSPEL 68 Query: 92 RF-----SNIAKSLDSILIDTRKP------------VLLEDIDLLDFNDT---QLFHIIN 131 +++ +L +I+ +L++DI L + +L I N Sbjct: 69 HVIFTTTADMVSTLTNIISSGGTAEQFREKYMQADVLLVDDIQALAGKEAIQNELILIFN 128 Query: 132 SIHQYDSSLLMTARTFPVSWGVC 154 S ++ +MT+ +G+ Sbjct: 129 SFYESGKRFMMTSAQKEAGYGIQ 151 >gi|119356612|ref|YP_911256.1| IstB ATP binding domain-containing protein [Chlorobium phaeobacteroides DSM 266] gi|119353961|gb|ABL64832.1| IstB domain protein ATP-binding protein [Chlorobium phaeobacteroides DSM 266] Length = 175 Score = 54.0 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 22/114 (19%) Query: 66 VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDT 107 + L+GPSG+GKS LA ++ + + + +++D ++ I Sbjct: 10 KLTLIGPSGTGKSYLAGGLCHEALNLGYHELFRTMDELIHTIRLKEVTTAAAREFKRIMH 69 Query: 108 RKPVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158 + ++EDI +L +T LF ++N +H+ +S ++T P W L L Sbjct: 70 ARLPVIEDIMMLPLENTVAVGLFQLVNQLHE-QASFIITTNKSPKDWAEMLDRL 122 >gi|148927772|ref|ZP_01811204.1| AAA ATPase, central domain protein [candidate division TM7 genomosp. GTL1] gi|147886884|gb|EDK72422.1| AAA ATPase, central domain protein [candidate division TM7 genomosp. GTL1] Length = 390 Score = 54.0 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 40/191 (20%), Positives = 65/191 (34%), Gaps = 34/191 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125 +IL GP GSGK+ LA I + + + A + K + + ++ N Sbjct: 43 LILWGPPGSGKTTLARIIAKEVEADFIELSAVT-------AGKADITQVVERARQNRNLK 95 Query: 126 ----LF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 LF H N + L+ A T S+ V P L SR + V+ Sbjct: 96 MRTILFVDEIHRFNKAQQDAFLPHVESGLITLIGATTENPSFEVITP-LLSR---SRVLV 151 Query: 170 ISLPDDDFLEKVI--VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 + D + + +I + K Y+ E S A + + LAL Sbjct: 152 LEPLDKEDITTIIKKSLKKLKATKRVTPKALEYLA---ELSSGDARIALGNL-ELALDMA 207 Query: 228 MGITRSLAAEV 238 IT + + Sbjct: 208 EKITPEIVKKA 218 >gi|163851595|ref|YP_001639638.1| ATPase central domain-containing protein [Methylobacterium extorquens PA1] gi|163663200|gb|ABY30567.1| AAA ATPase central domain protein [Methylobacterium extorquens PA1] Length = 462 Score = 54.0 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 42/203 (20%), Positives = 79/203 (38%), Gaps = 29/203 (14%) Query: 67 VILVGPSGSGKSCLANIWS----DKSRSTRFSNIAKSLDSILIDTRKP----VLLEDIDL 118 ++L GP G+GK+ + + +++ + LD ++ R V+LED+DL Sbjct: 232 LLLYGPPGTGKTHVIRYIASNLPERTTVLITAEEVVYLDRYMLLARTLQPSIVVLEDVDL 291 Query: 119 LDFN---------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA- 165 + + + L ++N +H L + P L SR Sbjct: 292 VGRSREGMNSPKTEVLLNRLLNEMDGLHDDADVLFILTTNRPEEIEEA---LASRPGRVD 348 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME-RSLVFAEKLVDKMDNL-- 222 ++I+ PD +V ++ D I ++ +V R E S F +++V ++ Sbjct: 349 EAIEIANPD-AACRTRLVSLYGDA-IDFEEGAIDAVVTRSEGASAAFIKEMVRRLAQATI 406 Query: 223 ALSRGMGITRSLAAEVLKETQQC 245 A+ G IT + VL E Sbjct: 407 AVGTGNRITVATVESVLGEAVGS 429 >gi|261380370|ref|ZP_05984943.1| replication-associated recombination protein A [Neisseria subflava NJ9703] gi|284796894|gb|EFC52241.1| replication-associated recombination protein A [Neisseria subflava NJ9703] Length = 435 Score = 54.0 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 51/195 (26%), Positives = 80/195 (41%), Gaps = 26/195 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G GK+ LA I + + A S + D R+ + +I L T L Sbjct: 50 MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIREAIEKAEIALQQGRATIL 107 Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 F H N Q D+ L L+T A T S+ V P L SR A V + Sbjct: 108 FVDEVHRFNKAQQ-DAFLPYVESGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQSL 162 Query: 174 DDDFLEKVIVKMFA--DRQ-IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 D L+K+I K+ A + Q I+ +V + L++++ A +R + Sbjct: 163 SSDDLKKLITKVLALPEYQDFTIEADAQELLVNTADGDARRLLNLIEQLLRAANTRRLK- 221 Query: 231 TRSLAAEVLKETQQC 245 +L AE L ++ Sbjct: 222 --TLTAEFLADSLGA 234 >gi|240138763|ref|YP_002963235.1| hypothetical protein MexAM1_META1p2163 [Methylobacterium extorquens AM1] gi|240008732|gb|ACS39958.1| conserved hypothetical protein [Methylobacterium extorquens AM1] Length = 462 Score = 54.0 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 41/203 (20%), Positives = 78/203 (38%), Gaps = 29/203 (14%) Query: 67 VILVGPSGSGKSCLANIWS----DKSRSTRFSNIAKSLDSILIDTRKP----VLLEDIDL 118 ++L GP G+GK+ + + +++ + LD ++ R V+LED+DL Sbjct: 232 LLLYGPPGTGKTHVIRYIASNLPERTTVLITAEEVVYLDRYMLLARTLQPSIVVLEDVDL 291 Query: 119 LDFN---------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA- 165 + + + L ++N +H L + P L SR Sbjct: 292 VGRSREGMNSPKTEVLLNRLLNEMDGLHDDADVLFILTTNRPEEIEEA---LASRPGRVD 348 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME-RSLVFAEKLVDKMDNLAL 224 ++I+ PD +V ++ D I + +V R E S F +++V ++ + Sbjct: 349 EAIEIANPD-AACRTRLVSLYGDA-IDFKEGAIDAVVTRSEGASAAFIKEMVRRLAQATI 406 Query: 225 SRGM--GITRSLAAEVLKETQQC 245 + G IT + VL E Sbjct: 407 AAGTGNRITVATVESVLGEAVGS 429 >gi|124027779|ref|YP_001013099.1| replication factor C large subunit [Hyperthermus butylicus DSM 5456] gi|150415659|sp|A2BL93|RFCL_HYPBU RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|123978473|gb|ABM80754.1| Replication factor C large subunit [Hyperthermus butylicus DSM 5456] Length = 484 Score = 54.0 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 49/215 (22%), Positives = 82/215 (38%), Gaps = 39/215 (18%) Query: 55 LIDSWPSW--PSRVVIL-VGPSGSGKSCL----------------ANIWSDKSRSTRFSN 95 + SW P R L GP+G GK+ L A+ + KS R + Sbjct: 32 WLRSWLQGRIPERKAALFYGPAGVGKTSLVEAAANEYGLELIEMNASDFRRKSDIERIAK 91 Query: 96 IAKSLDSILIDTRKPVLLEDIDLLDFND-----TQLFHIINSIHQYDSSLLMTARTFPVS 150 IA + S+ RK +LL+++D + + +IN ++MTA Sbjct: 92 IAATQFSLFGRKRKIILLDEVDGISGTADRGGLDAILELINITK---HPIVMTANDP--- 145 Query: 151 WGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 W L L A+ +V + ++ +V+ ++ A I + + I QR E L Sbjct: 146 WDQKLKPLR---DASLMVPFYRLSERYVVQVLKRICAAENIECEDEALKLIAQRAEGDLR 202 Query: 211 FAEKLVDKMDNLALSRGMGITR-SLAAEVLKETQQ 244 A D A++ G G+ R L +L + Sbjct: 203 SAIN-----DLQAIAEGYGVVRVDLVRALLATRDR 232 >gi|15897671|ref|NP_342276.1| replication factor C large subunit [Sulfolobus solfataricus P2] gi|284174996|ref|ZP_06388965.1| replication factor C large subunit [Sulfolobus solfataricus 98/2] gi|42559540|sp|Q9UXF6|RFCL_SULSO RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit; AltName: Full=SsoRFC large subunit gi|6015707|emb|CAB57534.1| replication factor C, large subunit [Sulfolobus solfataricus P2] gi|13813942|gb|AAK41066.1| Activator 1, replication factor C (RFC) large subunit (rfcL) [Sulfolobus solfataricus P2] gi|261602439|gb|ACX92042.1| AAA ATPase central domain protein [Sulfolobus solfataricus 98/2] Length = 405 Score = 54.0 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 42/211 (19%), Positives = 81/211 (38%), Gaps = 30/211 (14%) Query: 54 RLIDSWPSWPSRV--VILVGPSGSGKSCLANIWSDKSRSTR----------------FSN 95 I+SW + S V V+L GP G GK+ LA + + Sbjct: 28 EWIESWLNGNSNVKAVLLHGPPGVGKTVLAEALAHDYNFELLEMNASDSRKLQDIKSIAE 87 Query: 96 IAKSLDSILIDTRKPVLLEDIDLLDFNDT--QLFHIINSIHQYDSSLLMTARTFPVSWGV 153 A SI K +LL+++D ++ + + I+ I + ++MTA W Sbjct: 88 KAAVYGSIFGTKGKLILLDEVDGINVREDTGAIQGILELIEKTKYPIIMTANDP---WNP 144 Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213 L +L A ++++S L +++ K+ +I D + YI+ E +A Sbjct: 145 GLRELR---NKAKMIELSKLGKYPLRRILKKICQAEKIICDDEALNYIIDSSEGDARYAI 201 Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 ++ + +T +L + K ++ Sbjct: 202 NILQGIGE----GYGKVTLNLVESLAKRKER 228 >gi|328954615|ref|YP_004371948.1| chromosomal replication initiator protein DnaA [Coriobacterium glomerans PW2] gi|328454939|gb|AEB06133.1| chromosomal replication initiator protein DnaA [Coriobacterium glomerans PW2] Length = 591 Score = 54.0 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 22/191 (11%), Positives = 64/191 (33%), Gaps = 34/191 (17%) Query: 31 SFPRCL---GISRDDLLVHSAIEQAVRLIDSWPSWPSR-----VVILVGPSGSGKSCLAN 82 FP + ++ + +QA + + ++ + + G SG GK+ L Sbjct: 217 DFPSVPVNSKFTFENFVYGEENKQAYQSSLRFAAFAEEPGSYTSLFIYGNSGLGKTHLLL 276 Query: 83 IWSD------KSRSTRFSNIAKSLDSILID----------------TRKPVLLEDIDLLD 120 + +++N +D + + ++++DI + Sbjct: 277 AIENYLAETKPYMRVKYANSQAYIDDFINEVAIQKTDGHAILRDYHAADILIIDDIQNII 336 Query: 121 FNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 F +++ + + +++ + P G+ L SR + +S P + Sbjct: 337 GKTASIDYFFRLMDEFIRDNKKVVIASDRAPKKLGMD-ERLTSRFNGGMLCLVSEPGFEM 395 Query: 178 LEKVIVKMFAD 188 ++ + + + Sbjct: 396 KYAILKRYYEN 406 >gi|86169601|gb|ABC87040.1| chromosomal replication initiation protein [Fructobacillus fructosus KCTC 3544] Length = 290 Score = 54.0 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 53/138 (38%), Gaps = 11/138 (7%) Query: 111 VLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAAT 166 +L++DI + F+ N++ + + ++MT+ +P L D L SR + Sbjct: 54 LLVDDIQFWSGKPQVQEEFFNTFNALTKANKQIVMTSDRYPNDIP-DLQDRLKSRFEQGI 112 Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---RSLVFAEKLVDKMDNLA 223 I PD ++ M ++ I + I + ++ R+L A + Sbjct: 113 TSDIQKPDVQTKVGILRNMQEKNELDIPNDVLQLIGESIDGNVRTLEGAFHSFEAKIRF- 171 Query: 224 LSRGMGITRSLAAEVLKE 241 + T A +L+E Sbjct: 172 --QNKPATIETAKIILEE 187 >gi|14209506|dbj|BAB55906.1| putative transposase-associated ATP-binding protein [Bradyrhizobium elkanii] Length = 281 Score = 54.0 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 55/151 (36%), Gaps = 27/151 (17%) Query: 32 FPRCLGISRDDL----LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI---- 83 P D ++ A A+ D W + ++L GP G GKS LA Sbjct: 83 LPTGKTFDSFDFEAVPMISKAQMTALAAGDGWLN-KGANLLLFGPPGGGKSHLAAAIGLA 141 Query: 84 -----WS-------DKSRSTRFSNIAKSLDSIL--IDTRKPVLLEDIDLLDFNDTQ---L 126 W D + + + +L+ + +D V+L+D+ + + + L Sbjct: 142 LIENGWRVLFTRTTDLVQKLQVARRELNLEGAINRLDRFDLVILDDLAYVTKDQAETSVL 201 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 F +I S SLL+TA W PD Sbjct: 202 FELI-SARYERRSLLITANQPFGEWNKVFPD 231 >gi|116748300|ref|YP_844987.1| recombination factor protein RarA [Syntrophobacter fumaroxidans MPOB] gi|116697364|gb|ABK16552.1| Recombination protein MgsA [Syntrophobacter fumaroxidans MPOB] Length = 451 Score = 54.0 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 55/137 (40%), Gaps = 21/137 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRF--SNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +L GP GSGK+ LA I + ++++ S + I + + + T Sbjct: 58 FVLWGPPGSGKTTLAAIIAAQTQTHMIHLSAVMAGTREIREAVTEA---KQVWAKQKLRT 114 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H +N + + LL+ A T S+ + P L SR A V+ ++ Sbjct: 115 WLFMDEIHRLNKAQQDTLLPHIENGTLLLLGATTENPSFEIIRP-LLSR---ARVLVLNH 170 Query: 173 PDDDFLEKVIVKMFADR 189 D L ++ + DR Sbjct: 171 LSDAELGNIVHRALEDR 187 >gi|154706961|ref|YP_001424634.1| recombination factor protein RarA [Coxiella burnetii Dugway 5J108-111] gi|154356247|gb|ABS77709.1| ATPase, AAA family [Coxiella burnetii Dugway 5J108-111] Length = 440 Score = 54.0 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 39/184 (21%), Positives = 67/184 (36%), Gaps = 31/184 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTR--FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP GSGK+ LA I + K+ + S + + I ++E + T Sbjct: 47 MILWGPPGSGKTTLAEIMAQKAGARVESISAVLAGVKDIRD------VVERAERHKGQAT 100 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + + L+ A T S+ + L SR + V + Sbjct: 101 ILFVDEVHGFNKSQQDAFLPHVEKGTITLIGATTENPSFQLNNA-LLSRTR---VYVLKQ 156 Query: 173 PDDDFLEKVIVKMFA--DRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 + L ++ A +R + I + L IVQ + L++ + + AL Sbjct: 157 LTEADLLSILENALANEERGLGKKALEIPEPLRRRIVQFADGDARQCLNLLEIIADFALE 216 Query: 226 RGMG 229 Sbjct: 217 ENGR 220 >gi|254561363|ref|YP_003068458.1| hypothetical protein METDI2945 [Methylobacterium extorquens DM4] gi|254268641|emb|CAX24600.1| conserved hypothetical protein [Methylobacterium extorquens DM4] Length = 462 Score = 54.0 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 41/203 (20%), Positives = 79/203 (38%), Gaps = 29/203 (14%) Query: 67 VILVGPSGSGKSCLANIWS----DKSRSTRFSNIAKSLDSILIDTRKP----VLLEDIDL 118 ++L GP G+GK+ + + +++ + LD ++ R V+LED+DL Sbjct: 232 LLLYGPPGTGKTHVIRYIASNLPERTTVLITAEEVVYLDRYMLLARTLQPSIVVLEDVDL 291 Query: 119 LDFN---------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA- 165 + + + L ++N +H L + P L SR Sbjct: 292 VGRSREGMNSPKTEVLLNRLLNEMDGLHDDADVLFILTTNRPEEIEEA---LASRPGRVD 348 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME-RSLVFAEKLVDKMDNLAL 224 ++I+ PD +V ++ + I ++ IV R E S F +++V ++ + Sbjct: 349 EAIEIANPD-AACRTRLVSLYGE-SIDFEEGAIDAIVTRSEGASAAFVKEMVRRLAQATI 406 Query: 225 SRGM--GITRSLAAEVLKETQQC 245 + G IT + VL E Sbjct: 407 AAGTGNRITVATVESVLGEAVGS 429 >gi|212218615|ref|YP_002305402.1| recombination factor protein RarA [Coxiella burnetii CbuK_Q154] gi|212012877|gb|ACJ20257.1| ATPase, AAA family [Coxiella burnetii CbuK_Q154] Length = 427 Score = 54.0 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 39/184 (21%), Positives = 67/184 (36%), Gaps = 31/184 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTR--FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP GSGK+ LA I + K+ + S + + I ++E + T Sbjct: 34 MILWGPPGSGKTTLAEIMAQKAGARVESISAVLAGVKDIRD------VVERAERHKGQAT 87 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + + L+ A T S+ + L SR + V + Sbjct: 88 ILFVDEVHGFNKSQQDAFLPHVEKGTITLIGATTENPSFQLNNA-LLSRTR---VYVLKQ 143 Query: 173 PDDDFLEKVIVKMFA--DRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 + L ++ A +R + I + L IVQ + L++ + + AL Sbjct: 144 LTEADLLSILENALANEERGLGKKALEIPEPLRRRIVQFADGDARQCLNLLEIIADFALE 203 Query: 226 RGMG 229 Sbjct: 204 ENGR 207 >gi|15806898|ref|NP_295621.1| recombination factor protein RarA [Deinococcus radiodurans R1] gi|6459682|gb|AAF11452.1|AE002029_1 conserved hypothetical protein [Deinococcus radiodurans R1] Length = 434 Score = 54.0 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 68/174 (39%), Gaps = 23/174 (13%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA + + + + + A S + + D R V + + T Sbjct: 45 GSLILWGPPGVGKTTLARLLAGEVGAHFIALSAVS--AGVKDVRDAVAEAEREQARGRRT 102 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + L+ A T S+ V P L SR + V++ Sbjct: 103 VLFLDEIHRFNKAQQDALLPHVESGLLTLIGATTENPSFEVN-PALRSRAR-TLVLEALS 160 Query: 173 PDDDFLEKVIVKMFAD-RQI--FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 P+D ++ + +D R + + A ++ R+ A + + ++ A Sbjct: 161 PEDVL--ALLRRALSDERGLPGVEAEDSALELLARLAE--GDARRALSTLEVAA 210 >gi|167645615|ref|YP_001683278.1| recombination factor protein RarA [Caulobacter sp. K31] gi|167348045|gb|ABZ70780.1| AAA ATPase central domain protein [Caulobacter sp. K31] Length = 433 Score = 53.6 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 54/146 (36%), Gaps = 24/146 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G+GK+ +A + + K+ F I+ + D +K + T L Sbjct: 55 MILWGPPGTGKTTIARLLA-KAGGYEFQQISAVFSGVA-DLKKAFEQARMRRQAGQSTLL 112 Query: 127 F----HIINSIHQYD---------SSLLMTARTFPV-SWGVCLPDLCSRLKAATVVKISL 172 F H N Q +L+ P L SR V + Sbjct: 113 FVDEIHRFNRAQQDGFLPFVEEGIVTLVGATTENPSFELNGA---LLSR---CQVFVLKR 166 Query: 173 PDDDFLEKVIVK--MFADRQIFIDKK 196 DD+ LE +++K +R++ +D Sbjct: 167 LDDEALEALLIKAEAAENRKLPLDPD 192 >gi|227827645|ref|YP_002829425.1| replication factor C large subunit [Sulfolobus islandicus M.14.25] gi|229584849|ref|YP_002843351.1| replication factor C large subunit [Sulfolobus islandicus M.16.27] gi|259585252|sp|C3N5N1|RFCL_SULIA RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|259585254|sp|C3MVD2|RFCL_SULIM RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|227459441|gb|ACP38127.1| AAA ATPase central domain protein [Sulfolobus islandicus M.14.25] gi|228019899|gb|ACP55306.1| AAA ATPase central domain protein [Sulfolobus islandicus M.16.27] Length = 405 Score = 53.6 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 73/187 (39%), Gaps = 31/187 (16%) Query: 54 RLIDSWPSW-PSRVVIL-VGPSGSGKSCLANIWSDKSRSTR----------------FSN 95 I+SW + P+ +L GP G GK+ LA + + Sbjct: 28 EWIESWLNGKPNAKAVLLHGPPGVGKTTLAEALAHDYNLELLEMNASDSRKLQDIKSVAE 87 Query: 96 IAKSLDSILIDTRKPVLLEDIDLLDFNDT--QLFHIINSIHQYDSSLLMTARTFPVSWGV 153 A SI K +LL+++D ++ + + I+ I + L+MTA W Sbjct: 88 KASVYGSIFGTRGKLILLDEVDGINVREDTGAIQGILELIEKTKYPLIMTANDP---WNP 144 Query: 154 CLPDLCSRLKAATVVKISL-PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 L +L ++ K + K+ P L +++ K+ +I D + YI ++ S A Sbjct: 145 ALRELRNKTKMVGLNKLGKYP----LRRLLKKICQAEKIICDDEALNYI---IDTSEGDA 197 Query: 213 EKLVDKM 219 ++ + Sbjct: 198 RYAINML 204 >gi|229816226|ref|ZP_04446536.1| hypothetical protein COLINT_03276 [Collinsella intestinalis DSM 13280] gi|229808234|gb|EEP44026.1| hypothetical protein COLINT_03276 [Collinsella intestinalis DSM 13280] Length = 588 Score = 53.6 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 28/196 (14%), Positives = 65/196 (33%), Gaps = 32/196 (16%) Query: 32 FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS-----RVVILVGPSGSGKSCLANIWSD 86 + + A + ++ + + G SG GK+ L + Sbjct: 220 LDINAKYTFASFVAGDENRHAFNSAMRFAAYAEEPQQCPSLFIYGNSGLGKTHLLFAIRN 279 Query: 87 ------KSRSTRFSNIAKSLDS---ILIDTRKP-------------VLLEDIDLLDFNDT 124 +++N LD L R P ++++D+ + Sbjct: 280 YLAKEKPYIRVKYANSQAYLDDYMNELGAQRGPGNLIMREYRDADILIIDDVQNIVGKQA 339 Query: 125 QL---FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 + F +++S + + + + P + L SR + + +S P + ++ V Sbjct: 340 SVEFFFQLVDSFIREGKKIALASDRAPKDLAMD-ERLTSRFSSGMLCLVSEPGFE-MKYV 397 Query: 182 IVKMFADRQIFIDKKL 197 I+K + + I D+ L Sbjct: 398 ILKRYYESIIQQDEDL 413 >gi|319947814|ref|ZP_08022008.1| recombination factor protein RarA [Dietzia cinnamea P4] gi|319438538|gb|EFV93464.1| recombination factor protein RarA [Dietzia cinnamea P4] Length = 417 Score = 53.6 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 66/169 (39%), Gaps = 33/169 (19%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDT--------RKP 110 VIL GP G+GK+ LAN+ + S S K + +++ D R Sbjct: 35 GSSVILYGPPGTGKTTLANLVASTSGRHFVALSALSAGVKDVRAVIDDARTRQVHGQRTV 94 Query: 111 VLLEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 + ++++ + L + + LL+ A T + V P L SR + + + Sbjct: 95 LFIDEVHRFSKSQQDALL----AAVENGIVLLVAATTENPHFSVIAP-LLSR---SLIAE 146 Query: 170 ISLPDDDFLEKVIVKMFAD-RQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 + DD + V+ + +D R + R+E + AE +V Sbjct: 147 LQGLDDAGVAAVLRRAVSDERG----------LAGRVELTDAAAEDIVR 185 >gi|115380346|ref|ZP_01467349.1| AAA ATPase, central region [Stigmatella aurantiaca DW4/3-1] gi|115362645|gb|EAU61877.1| AAA ATPase, central region [Stigmatella aurantiaca DW4/3-1] Length = 284 Score = 53.6 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 42/194 (21%), Positives = 76/194 (39%), Gaps = 25/194 (12%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G+GK+ LA + + + + F +++ L + ++ L T Sbjct: 53 PSLILWGPPGTGKTTLARVIAQATGA-SFESLSAVLSGVKDIRETVARAQERWRLHRQRT 111 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + + L+ A T S+ V L SR A VV + Sbjct: 112 LLFIDEIHRFNKSQQDALLPHVEKGTVTLIGATTENPSFEVNAA-LLSR---ARVVTLRG 167 Query: 173 PDDDFLEKVIVKM-FADRQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 +++ L V+ + A + + +D + +I Q A K + ++ A G Sbjct: 168 LEEEELVGVLRRAVVAPKGLGGKVQVDDEALQFIAQAAG---GDARKALTALEVAASYGG 224 Query: 228 MGITRSLAAEVLKE 241 + R A E L++ Sbjct: 225 SQVNRQAAEEALQQ 238 >gi|89894586|ref|YP_518073.1| hypothetical protein DSY1840 [Desulfitobacterium hafniense Y51] gi|89334034|dbj|BAE83629.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 329 Score = 53.6 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 72/189 (38%), Gaps = 32/189 (16%) Query: 67 VILVGPSGSGKSCLANIWSDK---------------SRSTRFSNIAKSLDSILIDTRKP- 110 +L GP G GKS L + ++ F+ +L + R P Sbjct: 27 TLLYGPEGVGKSTLLVKCCQRLKEKKTILYIDAQDFVKNYAFAAQEGTLSQFRLRLRTPG 86 Query: 111 -VLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 ++++ I++L + + +H ++ Q + ++ R P G L SRL+ Sbjct: 87 VLIMDHIEVLKGKTRSIEEFYHTYEALFQRNGRIICGFRGDPSQLGFLGEKLSSRLRGGL 146 Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD--------- 217 VV I P + + + +M + + ++ + ++ + A+ L++ Sbjct: 147 VVPILQPTPEDMLNYLRQMAYGKFLIVEDLVLE-LMAEEAANFPKAQSLMNGFIQFANRT 205 Query: 218 --KMDNLAL 224 +D+ AL Sbjct: 206 DSALDHGAL 214 >gi|241760045|ref|ZP_04758143.1| recombination factor protein RarA [Neisseria flavescens SK114] gi|241319499|gb|EER55929.1| recombination factor protein RarA [Neisseria flavescens SK114] Length = 435 Score = 53.6 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 52/195 (26%), Positives = 80/195 (41%), Gaps = 26/195 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G GK+ LA I + + A S + D R+ + +I L T L Sbjct: 50 MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIREAIDKAEIALQQGRTTIL 107 Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 F H N Q D+ L L+T A T S+ V P L SR A V + Sbjct: 108 FVDEVHRFNKAQQ-DAFLPHVESGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQSL 162 Query: 174 DDDFLEKVIVKMFA--DRQ-IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 D L+K+I K+ A + Q ID +V + L++++ A +R + Sbjct: 163 SSDDLKKLIAKVLALPEYQEFTIDVDAQELLVNTADGDARRLLNLIEQLLRAADTRRLK- 221 Query: 231 TRSLAAEVLKETQQC 245 +L AE L ++ Sbjct: 222 --TLTAEFLADSLGA 234 >gi|164685937|ref|ZP_01946864.2| ATPase, AAA family [Coxiella burnetii 'MSU Goat Q177'] gi|165919023|ref|ZP_02219109.1| ATPase, AAA family [Coxiella burnetii RSA 334] gi|164601458|gb|EAX32492.2| ATPase, AAA family [Coxiella burnetii 'MSU Goat Q177'] gi|165917278|gb|EDR35882.1| ATPase, AAA family [Coxiella burnetii RSA 334] Length = 440 Score = 53.6 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 39/184 (21%), Positives = 67/184 (36%), Gaps = 31/184 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTR--FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP GSGK+ LA I + K+ + S + + I ++E + T Sbjct: 47 MILWGPPGSGKTTLAEIMAQKAGARVESISAVLAGVKDIRD------VVERAERHKGQAT 100 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + + L+ A T S+ + L SR + V + Sbjct: 101 ILFVDEVHGFNKSQQDAFLPHVEKGTITLIGATTENPSFQLNNA-LLSRTR---VYVLKQ 156 Query: 173 PDDDFLEKVIVKMFA--DRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 + L ++ A +R + I + L IVQ + L++ + + AL Sbjct: 157 LTEADLLSILENALANEERGLGKKALEIPEPLRRRIVQFADGDARQCLNLLEIIADFALE 216 Query: 226 RGMG 229 Sbjct: 217 ENGR 220 >gi|212212420|ref|YP_002303356.1| recombination factor protein RarA [Coxiella burnetii CbuG_Q212] gi|212010830|gb|ACJ18211.1| ATPase, AAA family [Coxiella burnetii CbuG_Q212] Length = 427 Score = 53.6 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 39/184 (21%), Positives = 67/184 (36%), Gaps = 31/184 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTR--FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP GSGK+ LA I + K+ + S + + I ++E + T Sbjct: 34 MILWGPPGSGKTTLAEIMAQKAGARVESISAVLAGVKDIRD------VVERAERHKGQAT 87 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + + L+ A T S+ + L SR + V + Sbjct: 88 ILFVDEVHGFNKSQQDAFLPHVEKGTITLIGATTENPSFQLNNA-LLSRTR---VYVLKQ 143 Query: 173 PDDDFLEKVIVKMFA--DRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 + L ++ A +R + I + L IVQ + L++ + + AL Sbjct: 144 LTEADLLSILENALANEERGLGKKALEIPEPLRRRIVQFADGDARQCLNLLEIIADFALE 203 Query: 226 RGMG 229 Sbjct: 204 ENGR 207 >gi|152989818|ref|YP_001355540.1| recombination factor protein RarA [Nitratiruptor sp. SB155-2] gi|151421679|dbj|BAF69183.1| ATPase, AAA family [Nitratiruptor sp. SB155-2] Length = 391 Score = 53.6 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 76/179 (42%), Gaps = 21/179 (11%) Query: 70 VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT----------RKPVLLEDIDLL 119 GP G+GK+ LA I + + S F A SL I + + ++++ L Sbjct: 40 FGPPGTGKTTLARIVAKEYESDFFELNATSLKIEEIRKIVHRYKGSFIKPLLFIDEVHRL 99 Query: 120 DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179 N ++ I + + +L++ A T + + + SR + + + +++ L Sbjct: 100 SKNQQEVLLPI---MEKEEALILGASTENPFFSLTAA-IRSR---SMLFEFRPLNEEDLN 152 Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238 +++ ++ + + ID++ YI+ R+ S A L+ + +L IT L + Sbjct: 153 QLVHRVCQNEECSIDEEAKEYII-RI--SQGDARNLLKFLTKASLIE-SHITLQLLRSL 207 >gi|256811408|ref|YP_003128777.1| AAA ATPase central domain protein [Methanocaldococcus fervens AG86] gi|256794608|gb|ACV25277.1| AAA ATPase central domain protein [Methanocaldococcus fervens AG86] Length = 488 Score = 53.6 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 70/177 (39%), Gaps = 28/177 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIA---------------KSLDSILIDTRKPV 111 ++LVGP G GK+ LA ++ A + S + + + Sbjct: 42 ILLVGPPGCGKTTLAYALANDYGFEVIELNASDKRNASSIKKVVGHAATSSSVFGKKFLI 101 Query: 112 LLEDIDLLDFNDTQ--LFHIINSIHQYDSSLLMTARTF-PVSWGVCLPDLCSRLKAATVV 168 +L+++D + + + +I I + + +++TA S LP V+ Sbjct: 102 VLDEVDGISGKEDAGGVSELIKVIKKAKNPIILTANDAYATSIRNLLP-------YVEVI 154 Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 +++ + + KV+ K+ + +D K+ I Q S ++ ++ LALS Sbjct: 155 QLNPVHTNSVYKVLKKIAEKEGLNVDDKILKMIAQH---SAGDLRSAINDLEALALS 208 >gi|15827173|ref|NP_301436.1| recombination factor protein RarA [Mycobacterium leprae TN] gi|221229651|ref|YP_002503067.1| recombination factor protein RarA [Mycobacterium leprae Br4923] gi|13092721|emb|CAC30018.1| conserved hypothetical protein [Mycobacterium leprae] gi|219932758|emb|CAR70603.1| conserved hypothetical protein [Mycobacterium leprae Br4923] Length = 473 Score = 53.6 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 39/197 (19%), Positives = 77/197 (39%), Gaps = 32/197 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVL--------L 113 IL GP G GK+ LA + S + S K + ++L R +L + Sbjct: 90 AILHGPPGCGKTTLAALISQATGHRFEALSALSAGVKDVRAVLKIARSALLSGKRTVLFI 149 Query: 114 EDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +++ L S + LL+ A T S+ V P L SR + ++++ Sbjct: 150 DEVHRFSKTQQDALL----SAVENRVVLLVAATTENPSFSVVAP-LLSR---SLILQLRP 201 Query: 173 PDDDFLEKVIVKMFAD-R----QIFIDKKLAAYIVQRMERSLVFAEKLVDKMD--NLALS 225 + D + V+ + D R QI + + ++ R+ + A +++ ++ A+ Sbjct: 202 LNADDIRAVVQRAVDDPRGLGGQIAVAPEAVD-LLVRL--AAGDARRVLTALEVAAEAVQ 258 Query: 226 RGMGITRSLAAEVLKET 242 G +T + + L Sbjct: 259 TGDELTVATIEQSLDNA 275 >gi|329667375|gb|AEB93323.1| recombination factor protein [Lactobacillus johnsonii DPC 6026] Length = 420 Score = 53.6 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 40/191 (20%), Positives = 73/191 (38%), Gaps = 26/191 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSR------STRFSNIAKSLDSILIDTRKPVL--LEDIDL 118 ++L GP G+GK+ LA I + + + N AK + I + + +++I Sbjct: 44 LLLWGPPGTGKTSLAQIIAREYDYPLATFNASVDNKAKLMQIINTYPYQSFVLLIDEIHR 103 Query: 119 --LDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 D L ++ N LL+ A T + P + SR + + DD Sbjct: 104 MTTTLQDYLLPYLEN-----GQILLIGATTENPIMSIV-PAVRSR---CQIFEFEPLDDK 154 Query: 177 FLEKVIVKM----FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232 + +V+V+ F + IDK+ I + + L A L++ + G I+ Sbjct: 155 DISEVLVRALKEVFHLDEKQIDKEAINIIARSADGDLRVALNLLETIHA---VNGEEISV 211 Query: 233 SLAAEVLKETQ 243 E +K Sbjct: 212 KNVKEFVKGQH 222 >gi|304316707|ref|YP_003851852.1| ATPase AAA [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778209|gb|ADL68768.1| AAA ATPase central domain protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 444 Score = 53.6 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 71/176 (40%), Gaps = 32/176 (18%) Query: 65 RVVILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD-- 120 R +I GP G+GK+ LANI ++ KS + + + + I K ++ E D L Sbjct: 53 RSLIFYGPPGTGKTTLANIIANTTKSSFEKLNAVTSGVTDI-----KKIVNESKDRLSMY 107 Query: 121 FNDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168 T LF H N + + +L+ A T + V P L SR + + Sbjct: 108 GKRTILFIDEIHRFNKSQQDALLPYVEDGTIILIGATTENPYFEVIRP-LVSR---SMIF 163 Query: 169 KISLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVD 217 ++ ++ +++++++ D R + I +I+ + A ++ Sbjct: 164 ELYPLSNEDIKEIVLRALNDEKRGLGNEKIKITDDALNHIITYSDGDARAALNAIE 219 >gi|254775881|ref|ZP_05217397.1| recombination factor protein RarA [Mycobacterium avium subsp. avium ATCC 25291] Length = 391 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 38/195 (19%), Positives = 74/195 (37%), Gaps = 31/195 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVL--------L 113 IL GP GSGK+ LA + S + S K + +++ R +L + Sbjct: 9 AILYGPPGSGKTTLAALISQATGRRFEALSALSAGVKDVRAVIESARTALLRGEQTVLFI 68 Query: 114 EDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +++ L S + LL+ A T S+ V P L SR + ++++ Sbjct: 69 DEVHRFSKTQQDALL----SAVENRVVLLVAATTENPSFSVVAP-LLSR---SLILQLRP 120 Query: 173 PDDDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 D + V+ + D R + + + ++ R+ + A + + ++ A G Sbjct: 121 LSADDIRTVVRRAIDDPRGLGGRVPVAPEAVD-LLVRL--AAGDARRALTALEVAA-EAG 176 Query: 228 MGITRSLAAEVLKET 242 +T + L E Sbjct: 177 ESVTVQTVEQSLDEA 191 >gi|94265038|ref|ZP_01288806.1| AAA ATPase, central region [delta proteobacterium MLMS-1] gi|93454471|gb|EAT04759.1| AAA ATPase, central region [delta proteobacterium MLMS-1] Length = 441 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 74/190 (38%), Gaps = 33/190 (17%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAK--------------SLDSILIDTRKP 110 ++L GP GSGK+ LA + + +S + A L+ Sbjct: 45 PSLLLWGPPGSGKTTLARLLARQSGADFIFFSAVLSGVKEIRAIVERSRLNLEKSGRGSV 104 Query: 111 VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 + +++I + F + L+ A T S+ V P L SR V+ + Sbjct: 105 LFVDEIHRFNKGQQDAFLPH---VESGLLTLIGATTENPSFQVIAP-LLSR---CRVLVL 157 Query: 171 SLPDDDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRME---RSLVFAEKLVDKM- 219 + ++D L +++ +DRQ + I + AA+++ + R+L+ + ++ + Sbjct: 158 NALEEDELGEILAAALSDRQQGLGESELSISDEAAAHLIAVADGDARNLLGSLEIAAALV 217 Query: 220 -DNLALSRGM 228 D A G Sbjct: 218 ADKKAADTGR 227 >gi|328954253|ref|YP_004371587.1| AAA ATPase central domain protein [Desulfobacca acetoxidans DSM 11109] gi|328454577|gb|AEB10406.1| AAA ATPase central domain protein [Desulfobacca acetoxidans DSM 11109] Length = 433 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 58/157 (36%), Gaps = 27/157 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIA-----KSLDSILIDTRKPVLLEDIDLLDF 121 +I GP G GK+ LA I + +RS S A K + ++ K L + ++ Sbjct: 48 LIFWGPPGCGKTTLAQIIAGVTRSHFVSLSAVLSGVKDIREVVAQAEKKRLQQQRTIVLI 107 Query: 122 NDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 ++ H N + + +L+ A T + V P L SR A V Sbjct: 108 DEI---HRFNKAQQDALLPHVEAGTLILIGATTENPYFEVIAP-LLSR---ARVFVFQPL 160 Query: 174 DDDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQ 203 ++ + ++ + DRQ + Y+ + Sbjct: 161 TEEQIRLLLDRALRDRQRGLGTFPASLTDDAWRYLAR 197 >gi|189345671|ref|YP_001942200.1| IstB domain protein ATP-binding protein [Chlorobium limicola DSM 245] gi|189346250|ref|YP_001942779.1| IstB domain protein ATP-binding protein [Chlorobium limicola DSM 245] gi|189339818|gb|ACD89221.1| IstB domain protein ATP-binding protein [Chlorobium limicola DSM 245] gi|189340397|gb|ACD89800.1| IstB domain protein ATP-binding protein [Chlorobium limicola DSM 245] Length = 270 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 50/112 (44%), Gaps = 22/112 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDTR 108 +IL+GPSG+GKS LA ++ + + +++D ++ + Sbjct: 104 LILIGPSGTGKSYLAGGLCHEALKLGYHALFRTMDELIQTIRFKDVTTAAAREYKRLVHA 163 Query: 109 KPVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 ++++DI + + LF +IN +H+ +S ++T P W L D Sbjct: 164 HLLVIDDIMMFPIEKSVAVGLFQLINQLHE-QTSFIITTNKNPKEWAEMLGD 214 >gi|151940918|gb|EDN59300.1| ATPase family protein [Saccharomyces cerevisiae YJM789] Length = 780 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 64/173 (36%), Gaps = 35/173 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P R ++L GP G+GK+ L + ++ S + + S+ S + + L Sbjct: 278 PPRGILLHGPPGTGKTMLLRVVANTSNAHVLTINGPSIVSKYLGETEAALRDIFNEARKY 337 Query: 113 ------LEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 +++ID + N L +++ + +++ A P S Sbjct: 338 QPSIIFIDEIDSIAPNRANDDSGEVESRVVATLLTLMDGMGAAGKVVVIAATNRPNS--- 394 Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQ 203 P L + V+I +PD D ++ K F+ + +D + YI Sbjct: 395 VDPALRRPGRFDQEVEIGIPDVDARFDILTKQFSRMSSDRHVLDSEAIKYIAS 447 >gi|323303728|gb|EGA57514.1| Afg2p [Saccharomyces cerevisiae FostersB] gi|323307896|gb|EGA61156.1| Afg2p [Saccharomyces cerevisiae FostersO] Length = 780 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 64/173 (36%), Gaps = 35/173 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P R ++L GP G+GK+ L + ++ S + + S+ S + + L Sbjct: 278 PPRGILLHGPPGTGKTMLLRVVANTSNAHVLTINGPSIVSKYLGETEAALRDIFNEARKY 337 Query: 113 ------LEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 +++ID + N L +++ + +++ A P S Sbjct: 338 QPSIIFIDEIDSIAPNRANDDSGEVESRVVATLLTLMDGMGAAGKVVVIAATNRPNS--- 394 Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQ 203 P L + V+I +PD D ++ K F+ + +D + YI Sbjct: 395 VDPALRRPGRFDQEVEIGIPDVDARFDILTKQFSRMSSDRHVLDSEAIKYIAS 447 >gi|189345776|ref|YP_001942305.1| IstB domain protein ATP-binding protein [Chlorobium limicola DSM 245] gi|189339923|gb|ACD89326.1| IstB domain protein ATP-binding protein [Chlorobium limicola DSM 245] Length = 257 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 22/112 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL----------IDTRKPVLLEDI 116 +IL+GPSG+GKS LA ++ + + +++D ++ R+ L Sbjct: 83 LILIGPSGTGKSYLAGGLCHEALKLGYHALFRTMDELIQTIRFKEVTTAAAREYKRLVHA 142 Query: 117 DLLDFNDT-----------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 LL +D LF +IN +H+ +S ++T P W L D Sbjct: 143 HLLVIDDIMMFPLEKSVAVGLFQLINQLHE-KTSFIITTNKNPKEWAEMLGD 193 >gi|148657906|ref|YP_001278111.1| recombination factor protein RarA [Roseiflexus sp. RS-1] gi|148570016|gb|ABQ92161.1| AAA ATPase, central domain protein [Roseiflexus sp. RS-1] Length = 505 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 62/158 (39%), Gaps = 28/158 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125 +IL GP GSGK+ LA I +D + + S S + + V+ E D L + Sbjct: 60 IILWGPPGSGKTTLARIIADTTNAHF---EQLSAVSAGVADLRRVVKEAQDRLGMFQQRT 116 Query: 126 -LF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +F H N + + +L+ A T S+ V P L SR A V + Sbjct: 117 IVFIDEIHRFNKAQQDAILPYVEDGTIILIGATTENPSFEVN-PALRSR---ARVFVLEA 172 Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQ 203 DD + ++ + +D R + + Y++ Sbjct: 173 LTDDQIGVIVDRALSDTERGLGELNVLLAADARGYLIN 210 >gi|6323429|ref|NP_013501.1| Afg2p [Saccharomyces cerevisiae S288c] gi|416590|sp|P32794|AFG2_YEAST RecName: Full=ATPase family gene 2 protein gi|295573|gb|AAC37367.1| AFG2 [Saccharomyces cerevisiae] gi|625113|gb|AAB82355.1| Afg2p [Saccharomyces cerevisiae] gi|51013683|gb|AAT93135.1| YLR397C [Saccharomyces cerevisiae] gi|259148375|emb|CAY81622.1| Afg2p [Saccharomyces cerevisiae EC1118] gi|285813802|tpg|DAA09698.1| TPA: Afg2p [Saccharomyces cerevisiae S288c] gi|323332432|gb|EGA73841.1| Afg2p [Saccharomyces cerevisiae AWRI796] gi|323336415|gb|EGA77683.1| Afg2p [Saccharomyces cerevisiae Vin13] gi|323353724|gb|EGA85580.1| Afg2p [Saccharomyces cerevisiae VL3] Length = 780 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 64/173 (36%), Gaps = 35/173 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P R ++L GP G+GK+ L + ++ S + + S+ S + + L Sbjct: 278 PPRGILLHGPPGTGKTMLLRVVANTSNAHVLTINGPSIVSKYLGETEAALRDIFNEARKY 337 Query: 113 ------LEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 +++ID + N L +++ + +++ A P S Sbjct: 338 QPSIIFIDEIDSIAPNRANDDSGEVESRVVATLLTLMDGMGAAGKVVVIAATNRPNS--- 394 Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQ 203 P L + V+I +PD D ++ K F+ + +D + YI Sbjct: 395 VDPALRRPGRFDQEVEIGIPDVDARFDILTKQFSRMSSDRHVLDSEAIKYIAS 447 >gi|219669020|ref|YP_002459455.1| replication initiation factor DnaA protein [Desulfitobacterium hafniense DCB-2] gi|219539280|gb|ACL21019.1| Chromosomal replication initiator DnaA domain protein [Desulfitobacterium hafniense DCB-2] Length = 329 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 72/189 (38%), Gaps = 32/189 (16%) Query: 67 VILVGPSGSGKSCLANIWSDK---------------SRSTRFSNIAKSLDSILIDTRKP- 110 +L GP G GKS L + ++ F+ +L + R P Sbjct: 27 TLLYGPEGVGKSTLLVKCCQRLKEKKTILYIDAQDFVKNYAFAAQEGTLSQFRLRLRTPG 86 Query: 111 -VLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 ++++ I++L + + +H ++ Q + ++ R P G L SRL+ Sbjct: 87 VLIMDHIEVLKGKTRSIEEFYHTYEALFQRNGRIICGFRGDPSQLGFLGEKLSSRLRGGL 146 Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD--------- 217 VV I P + + + +M + + ++ + ++ + A+ L++ Sbjct: 147 VVPILQPTPEDMLNYLRQMAYGKFLIVEDLVLE-LMAEEAANFPEAQSLMNGFIQFANRT 205 Query: 218 --KMDNLAL 224 +D+ AL Sbjct: 206 DSALDHDAL 214 >gi|66823793|ref|XP_645251.1| hypothetical protein DDB_G0272158 [Dictyostelium discoideum AX4] gi|75009093|sp|Q75JU2|WRIP1_DICDI RecName: Full=ATPase WRNIP1; AltName: Full=Werner helicase-interacting protein 1 homolog gi|60473285|gb|EAL71231.1| hypothetical protein DDB_G0272158 [Dictyostelium discoideum AX4] Length = 876 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 46/240 (19%), Positives = 84/240 (35%), Gaps = 46/240 (19%) Query: 4 MKEDYSFFVPDKQKNDQP---KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWP 60 +K YSF K+K+ P + + +L F I ++ LLV ++ Sbjct: 179 LKNKYSFLTNFKKKSFAPLSEQMRPTELS-DF-----IGQESLLVGDP------IVKKLF 226 Query: 61 SWPS-RVVILVGPSGSGKSCLANIWSDKSRSTR-----FSNIAKSLDSILIDTRKPVLLE 114 P IL GP G GK+ LA I + KS + K + ++ R + Sbjct: 227 QSPELPSFILYGPPGCGKTTLAQIVASKSNYNINALSAVGSGVKDIKEVIDKARNTLQFG 286 Query: 115 DIDLLDFNDTQLFHIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLKA 164 +L ++ H N + + +L+ T L SR Sbjct: 287 KKTILFIDEI---HRYNKLQQDVLLPAIESGIIILIGATTENPSFELNGA---LLSR--- 337 Query: 165 ATVVKISLPDDDFLEKVIVK------MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218 V K+ + LE +I + + DR++ +D+ + + + A ++D Sbjct: 338 CKVFKMEKLTKENLETLIKRTLEVTPLLMDRRLIMDEDAIKSLAEIADGDARVAINVLDM 397 >gi|172040631|ref|YP_001800345.1| recombination factor protein RarA [Corynebacterium urealyticum DSM 7109] gi|171851935|emb|CAQ04911.1| conserved hypothetical protein [Corynebacterium urealyticum DSM 7109] Length = 461 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 45/204 (22%), Positives = 80/204 (39%), Gaps = 46/204 (22%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRF-------------SNIAKSLDSILIDTRKP 110 VIL GP G+GK+ +A++ S S + I + +L R Sbjct: 66 DSSVILFGPPGTGKTTIASLISAASGRHFVALSALNSGVKEVRAVIEDARRRLLHGARTV 125 Query: 111 VLLEDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 + ++++ L + + + LL+ A T S+ V P L SR + +V+ Sbjct: 126 LFIDEVHRFSKTQQDALL----AAVENRTVLLVAATTENPSFSVVSP-LLSR---SLLVQ 177 Query: 170 ISLPDDDFLEKVIVKMFAD-RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228 + D+D ++ V+ + AD R + ++A D +D LA G Sbjct: 178 LKSLDEDGIKSVLRRAIADERGLAGQVQIAD-----------------DALDQLAAVSGG 220 Query: 229 GITRSL------AAEVLKETQQCD 246 RSL A +VL++ + D Sbjct: 221 DARRSLTYLEAVAEDVLQQKEAGD 244 >gi|27376818|ref|NP_768347.1| transposase [Bradyrhizobium japonicum USDA 110] gi|27377010|ref|NP_768539.1| transposase [Bradyrhizobium japonicum USDA 110] gi|27377107|ref|NP_768636.1| transposase [Bradyrhizobium japonicum USDA 110] gi|27378637|ref|NP_770166.1| transposase [Bradyrhizobium japonicum USDA 110] gi|27380110|ref|NP_771639.1| transposase [Bradyrhizobium japonicum USDA 110] gi|27349960|dbj|BAC46972.1| blr1707 [Bradyrhizobium japonicum USDA 110] gi|27350152|dbj|BAC47164.1| bll1899 [Bradyrhizobium japonicum USDA 110] gi|27350250|dbj|BAC47261.1| bll1996 [Bradyrhizobium japonicum USDA 110] gi|27351785|dbj|BAC48791.1| bll3526 [Bradyrhizobium japonicum USDA 110] gi|27353264|dbj|BAC50264.1| bll4999 [Bradyrhizobium japonicum USDA 110] Length = 281 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 54/151 (35%), Gaps = 27/151 (17%) Query: 32 FPRCLGISRDDL----LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI---- 83 P D ++ A A+ D W ++L GP G GKS LA Sbjct: 83 LPTGKTFDSFDFEAVPMISKAQMTALAAGDGW-LGKGANLLLFGPPGGGKSHLAAAIGLA 141 Query: 84 -----WS-------DKSRSTRFSNIAKSLDSIL--IDTRKPVLLEDIDLLDFNDTQ---L 126 W D + + + +L+ + +D V+L+D+ + + + L Sbjct: 142 LIENGWRVLFTRTTDLVQKLQVARRELNLEGAINRLDRFDLVILDDLAYVTKDQAETSVL 201 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 F +I S SLL+TA W PD Sbjct: 202 FELI-SARYERRSLLITANQPFGEWNKVFPD 231 >gi|289192266|ref|YP_003458207.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus sp. FS406-22] gi|288938716|gb|ADC69471.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus sp. FS406-22] Length = 903 Score = 53.2 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 36/231 (15%), Positives = 84/231 (36%), Gaps = 57/231 (24%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + V+LVGP G+GK+ LA ++++ + + N+ K + + Sbjct: 212 PPKGVLLVGPPGTGKTLLAKAVANEAGANFYVINGPEIMSKYVGETEENLRKIFEEAEEN 271 Query: 107 TRKPVLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + ++ QL +++ + +++ A P + Sbjct: 272 APSIIFIDEIDAIAPKRDEATGEVERRLVAQLLTLMDGLKGRGQVVVIGATNRPNALD-- 329 Query: 155 LPDLC--SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYI--VQRM---- 205 P L R V I +PD + ++++ R + + + + Y+ V Sbjct: 330 -PALRRPGRFDREIV--IGVPDREGRKEILQ--IHTRNMPLAEDVDLDYLADVTHGFVGA 384 Query: 206 -------ERSLVFAEKLVDKMDNLALSRGM------GITRSLAAEVLKETQ 243 E ++ +++ +D A +T E LK+ + Sbjct: 385 DLAALCKEAAMRALRRVLPSIDLEAEEIPKEVLDNLKVTMDDFKEALKDVE 435 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 20/32 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + V+L GP G+GK+ LA +++S + S Sbjct: 485 PPKGVLLFGPPGTGKTLLAKAVANESGANFIS 516 >gi|15669345|ref|NP_248150.1| cell division protein CDC48 [Methanocaldococcus jannaschii DSM 2661] gi|2492505|sp|Q58556|Y1156_METJA RecName: Full=Cell division cycle protein 48 homolog MJ1156 gi|1591785|gb|AAB99153.1| cell division control protein 48 (cdc48), AAA family [Methanocaldococcus jannaschii DSM 2661] Length = 903 Score = 53.2 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 36/231 (15%), Positives = 84/231 (36%), Gaps = 57/231 (24%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + V+LVGP G+GK+ LA ++++ + + N+ K + + Sbjct: 212 PPKGVLLVGPPGTGKTLLAKAVANEAGANFYVINGPEIMSKYVGETEENLRKIFEEAEEN 271 Query: 107 TRKPVLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + ++ QL +++ + +++ A P + Sbjct: 272 APSIIFIDEIDAIAPKRDEATGEVERRLVAQLLTLMDGLKGRGQVVVIGATNRPNALD-- 329 Query: 155 LPDLC--SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYI--VQRM---- 205 P L R V I +PD + ++++ R + + + + Y+ V Sbjct: 330 -PALRRPGRFDREIV--IGVPDREGRKEILQ--IHTRNMPLAEDVDLDYLADVTHGFVGA 384 Query: 206 -------ERSLVFAEKLVDKMDNLALSRGM------GITRSLAAEVLKETQ 243 E ++ +++ +D A +T E LK+ + Sbjct: 385 DLAALCKEAAMRALRRVLPSIDLEAEEIPKEVLDNLKVTMDDFKEALKDVE 435 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 20/32 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + V+L GP G+GK+ LA +++S + S Sbjct: 485 PPKGVLLFGPPGTGKTLLAKAVANESGANFIS 516 >gi|12620602|gb|AAG60878.1|AF322012_183 ID410 [Bradyrhizobium japonicum] gi|12620691|gb|AAG60967.1|AF322013_86 ID646 [Bradyrhizobium japonicum] Length = 269 Score = 52.8 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 54/151 (35%), Gaps = 27/151 (17%) Query: 32 FPRCLGISRDDL----LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI---- 83 P D ++ A A+ D W ++L GP G GKS LA Sbjct: 71 LPTGKTFDSFDFEAVPMISKAQMTALAAGDGW-LGKGANLLLFGPPGGGKSHLAAAIGLA 129 Query: 84 -----WS-------DKSRSTRFSNIAKSLDSIL--IDTRKPVLLEDIDLLDFNDTQ---L 126 W D + + + +L+ + +D V+L+D+ + + + L Sbjct: 130 LIENGWRVLFTRTTDLVQKLQVARRELNLEGAINRLDRFDLVILDDLAYVTKDQAETSVL 189 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 F +I S SLL+TA W PD Sbjct: 190 FELI-SARYERRSLLITANQPFGEWNKVFPD 219 >gi|148826111|ref|YP_001290864.1| recombination factor protein RarA [Haemophilus influenzae PittEE] gi|148716271|gb|ABQ98481.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Haemophilus influenzae PittEE] Length = 453 Score = 52.8 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 45/204 (22%), Positives = 82/204 (40%), Gaps = 37/204 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI-----------LIDTRKPVLL 113 +IL GP G+GK+ LA I + + + R S + + I L D + + + Sbjct: 53 MILWGPPGTGKTTLAEIIAQRINAEVERISAVTSGIKEIREAIDRAKQNRLADRKTILFV 112 Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++ + + F HI + + + + A T S+ + L SR A V + Sbjct: 113 DEVHRFNKSQQDAFLPHI-----EDGTVIFIGATTENPSFELNNA-LLSR---ARVYVLK 163 Query: 172 LPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERS----LVFAEKLVDKMD 220 +E+V+ + D R + +++ L + + + L E +VD D Sbjct: 164 SLTTAEIEQVLQQAVEDPERGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMAD 223 Query: 221 NLALSRGMGITRSLAAEVLKETQQ 244 + G I R+L EVL E Q Sbjct: 224 E--MENGKKIDRTLLKEVLGERQA 245 >gi|297527206|ref|YP_003669230.1| AAA ATPase central domain protein [Staphylothermus hellenicus DSM 12710] gi|297256122|gb|ADI32331.1| AAA ATPase central domain protein [Staphylothermus hellenicus DSM 12710] Length = 423 Score = 52.8 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 36/206 (17%), Positives = 77/206 (37%), Gaps = 31/206 (15%) Query: 53 VRLIDSWPSW-PSRVV-ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI------- 103 ++ ++SW PS+ +L GP+G GK+ L +++ A Sbjct: 30 IQWLESWLKGKPSKKAALLYGPAGCGKTSLVEAAANEYGLEIVEMNASDFRRRQDIERIA 89 Query: 104 --------LIDTRKPVLLEDIDLLDF--NDTQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 L K +LL+++D + + ++ I++ + ++MTA W Sbjct: 90 KTAASMRSLFARGKIILLDEVDGISGTADKGAIYAILHLLEITRYPVVMTANNP---WDQ 146 Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213 L L A+ ++ + + V+ ++ ++ + I +R E L A Sbjct: 147 KLRPLR---DASLMISFKRLTERNVVIVLKRICQFEKLECEDAALKEIARRSEGDLRSAI 203 Query: 214 KLVDKMDNLALSRG-MGITRSLAAEV 238 D A++ G +T + E+ Sbjct: 204 N-----DLQAIAEGFGRVTLNWVREL 224 >gi|313680216|ref|YP_004057955.1| recombination protein mgsa [Oceanithermus profundus DSM 14977] gi|313152931|gb|ADR36782.1| Recombination protein MgsA [Oceanithermus profundus DSM 14977] Length = 435 Score = 52.8 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 66/186 (35%), Gaps = 19/186 (10%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +I GP G+GK+ LA I ++ + + A S + E + T L Sbjct: 47 MIFWGPPGTGKTTLARILANGVDARFVAMSAVSAGVKEVREAVKQAQEAV--SAGRPTVL 104 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP- 173 F H N + L+ A T S+ V P L SR A V + Sbjct: 105 FLDEVHRFNKAQQDALLPHVESGLLTLIGATTENPSFEVN-PALRSR---ARVYVLKALG 160 Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233 +DD + + + + + + + ++ A + ++ ++ A G +T Sbjct: 161 EDDLMRVLERALISSEGLPEAEAEEEALRLIAAAAMGDARRALNALELAAELGGGRVTLD 220 Query: 234 LAAEVL 239 A E L Sbjct: 221 AAREAL 226 >gi|114766485|ref|ZP_01445443.1| transposion helper protein, ATP-binding protein [Pelagibaca bermudensis HTCC2601] gi|114767342|ref|ZP_01446149.1| transposion helper protein, ATP-binding protein [Pelagibaca bermudensis HTCC2601] gi|114540546|gb|EAU43621.1| transposion helper protein, ATP-binding protein [Roseovarius sp. HTCC2601] gi|114541252|gb|EAU44302.1| transposion helper protein, ATP-binding protein [Roseovarius sp. HTCC2601] Length = 274 Score = 52.8 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 60/165 (36%), Gaps = 32/165 (19%) Query: 32 FPRCLGISRDDLLVHSAIEQAV--RLIDSWPSW--PSRVVILVGPSGSGKSCLANIWSDK 87 P+ + D L + QA L++ SW ++ GP GSGK+ LA + Sbjct: 55 LPQGKTLDAFDFLAVPTLSQARVRALVEGD-SWLQAGHNLLAFGPPGSGKTHLAGAIGYE 113 Query: 88 SRSTRF------------------SNIAKSLDSILIDTRKPVLLEDIDLLDFNDT---QL 126 + ++A + + +D ++L+D+ + + L Sbjct: 114 LIQRGYRVLMARTSDLVQRLQVARQDLALTQEIAKLDKFDLLILDDLSYVRKDQAETSAL 173 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 F +I S S+++TA W PD +A T+ I Sbjct: 174 FELI-SARYERRSIMITANQPFSGWDAIFPD-----RAMTIAAID 212 >gi|300087469|ref|YP_003757991.1| ATPase central domain-containing protein [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527202|gb|ADJ25670.1| AAA ATPase central domain protein [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 442 Score = 52.8 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 41/213 (19%), Positives = 77/213 (36%), Gaps = 39/213 (18%) Query: 54 RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL 113 L + S +IL GP GSGK+ LAN+ + + + A S + ++ Sbjct: 44 ALRRALESGKLPSLILWGPPGSGKTTLANLLARATSAHFSPVSAVSAGVADLRK----VI 99 Query: 114 EDIDLLDFND---TQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDL 158 E+ + T LF H N + + +L+ A T S+ V P L Sbjct: 100 EEARQRRLGEGRGTILFIDEIHRFNKSQQDTILPFVEDGTVVLIGATTENPSFEVISP-L 158 Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADR-------QIFIDKKLAAYIV------QRM 205 SR A + + ++ +I + +DR ++ + + I+ R+ Sbjct: 159 LSR---ARTFVLKGLSETDMKSIIERAVSDRDRGIGESRVDLSPEAMDRIISLASGDARI 215 Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238 +++ V +D S ++R E Sbjct: 216 ALNILELAAGVTPVDE---SGRRKVSRQTVDEA 245 >gi|260889193|ref|ZP_05900456.1| ATPase, AAA family [Leptotrichia hofstadii F0254] gi|260861253|gb|EEX75753.1| ATPase, AAA family [Leptotrichia hofstadii F0254] Length = 407 Score = 52.8 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 43/238 (18%), Positives = 74/238 (31%), Gaps = 49/238 (20%) Query: 29 FFSFPRCLGISRDDL-----LVHSAIEQAVRLIDSWPSWPSRVV--ILVGPSGSGKSCLA 81 +F S DD LV ++I+ + I G G+GK+ LA Sbjct: 13 PLAFRYRPK-SLDDFYGQKRLVGE-NGILRKIIER-----GNFMNAIFWGAPGTGKTTLA 65 Query: 82 NIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLF----HIINS 132 I +DK + +I + T LF H N Sbjct: 66 EIIADKMNYHYEYLNAIKASVTDIKNISDKAHSSF------HTNGQQTLLFLDEIHRFNK 119 Query: 133 IH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 + + + +L+ T S L SR + +D L K++ Sbjct: 120 LQQDSLLEDLENGNIILIGATTENPYYSLNNA---LLSR---CMAFEFKKLSEDDLLKIL 173 Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + I I + YI + +E A +++ + N+ G+ T E+L Sbjct: 174 KNINEKENIGISDDILGYISEIIEGDARQAINILELITNV----GVEFTLEEVKEILN 227 >gi|297181007|gb|ADI17208.1| ATPase related to the helicase subunit of the holliday junction resolvase [uncultured delta proteobacterium HF0070_10I02] Length = 481 Score = 52.8 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 38/205 (18%), Positives = 85/205 (41%), Gaps = 25/205 (12%) Query: 58 SWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID 117 + + ++L GP G GK+ LA + ++K +F ++ +D I + DI Sbjct: 85 ALENGTLSSLLLWGPPGCGKTTLARLLANKVG-LKFLQLSAVMDGIKELRKLLDRARDIK 143 Query: 118 LLDFNDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 L+ + LF H N + + +L+ A T + + +P L SR Sbjct: 144 TLERRGSLLFVDEIHRWNKAQQDALLPHVEEGTVVLIGATTENPGFQI-IPALRSR---C 199 Query: 166 TVVKISLPDDDFLEKVIVKMFA--DRQIF-----IDKKLAAYIVQRMERSLVFAEKLVDK 218 ++ ++ ++ L +++ + + DR + D++ IV A ++++ Sbjct: 200 WLLTLNPLGNEALTELLRRALSNTDRGLAKRNQMFDEEALHMIVAGASGDGRRALSVLER 259 Query: 219 MDNLALSRGMGITRSLAAEVLKETQ 243 + + AL G + + + V+ +T Sbjct: 260 I-SGALDDGETVDKEMLQTVMGKTD 283 >gi|303244607|ref|ZP_07330940.1| AAA ATPase central domain protein [Methanothermococcus okinawensis IH1] gi|302485033|gb|EFL47964.1| AAA ATPase central domain protein [Methanothermococcus okinawensis IH1] Length = 514 Score = 52.8 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 71/193 (36%), Gaps = 28/193 (14%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIA---------------KSLDSILIDT 107 P + V+LVGP G GK+ LAN ++ A S+ L Sbjct: 37 PVKPVLLVGPPGCGKTTLANALANDYGFEIIELNASDKRNKDVIKQVVGSASVSKSLSGK 96 Query: 108 RKPVLLEDIDLLDF--NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 R ++L+++D + + + I+ I + +++TA + P L S A Sbjct: 97 RALIILDEVDGISGNSDRGGVSEILKIIKTAKNPIILTAN------DIYKPSLMSLRNAC 150 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 +VKI + + V+ ++ +D + I + + A D +L+ Sbjct: 151 KIVKIGSVHTNSIVPVLRRIALKEGFNVDDSVLKIIAKHAGGDVRAAIN-----DLESLA 205 Query: 226 RGMGITRSLAAEV 238 G + E+ Sbjct: 206 LGNDLNLEEVKEL 218 >gi|207342744|gb|EDZ70411.1| YLR397Cp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 671 Score = 52.8 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 64/173 (36%), Gaps = 35/173 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P R ++L GP G+GK+ L + ++ S + + S+ S + + L Sbjct: 169 PPRGILLHGPPGTGKTMLLRVVANTSNAHVLTINGPSIVSKYLGETEAALRDIFNEARKY 228 Query: 113 ------LEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 +++ID + N L +++ + +++ A P S Sbjct: 229 QPSIIFIDEIDSIAPNRANDDSGEVESRVVATLLTLMDGMGAAGKVVVIAATNRPNS--- 285 Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQ 203 P L + V+I +PD D ++ K F+ + +D + YI Sbjct: 286 VDPALRRPGRFDQEVEIGIPDVDARFDILTKQFSRMSSDRHVLDSEAIKYIAS 338 >gi|189425920|ref|YP_001953097.1| IstB domain protein ATP-binding protein [Geobacter lovleyi SZ] gi|189422179|gb|ACD96577.1| IstB domain protein ATP-binding protein [Geobacter lovleyi SZ] Length = 247 Score = 52.8 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 56/143 (39%), Gaps = 23/143 (16%) Query: 32 FPRCLGISRDDLLVHSAIEQAVRLI-DSWPSWPSRVVILVGPSGSGKSCLANIWSDKS-- 88 FP + + EQ +R + + +ILVG +GSGK+ LA + ++ Sbjct: 66 FPVEKDLDHFEFTESPVNEQQIRTLYEGSFLAQKSNIILVGGTGSGKTHLAIAIARQAVR 125 Query: 89 -----RSTRFSNIAKSLDSILIDTRKPVLLE---DIDLLDFND-----------TQLFHI 129 R ++ L+ + + L E +DL+ ++ LFH+ Sbjct: 126 NGKRGRFFNLLDLVNQLEQEKLAGKGGKLAESLARLDLVVLDELGYLPFSKAGGQLLFHL 185 Query: 130 INSIHQYDSSLLMTARTFPVSWG 152 I+ +++ + L++T W Sbjct: 186 ISKLYER-TPLIITTNLPFSEWP 207 >gi|326201922|ref|ZP_08191792.1| AAA ATPase central domain protein [Clostridium papyrosolvens DSM 2782] gi|325987717|gb|EGD48543.1| AAA ATPase central domain protein [Clostridium papyrosolvens DSM 2782] Length = 427 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 72/182 (39%), Gaps = 33/182 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSR-------------STRFSNIAKSLDSILIDTRKPVL- 112 +IL GP G+GK+ LA I ++ ++ + A + +++L + VL Sbjct: 45 IILYGPPGTGKTSLARIIANTTQSSFEKLNAVTSGVADIKRIAADTQNTLLNPNGRTVLF 104 Query: 113 LEDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++I + L + S +L+ A T + V L SR +TV + Sbjct: 105 VDEIHRFNKAQQDALL----PFVEDGSIVLIGATTENPFFEVNKA-LISR---STVFMLK 156 Query: 172 LPDDDFLEKVIVKMFA--DRQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 + + +++++ DR + I + Y+ E S A ++ ++ L Sbjct: 157 PLEGEDIKELLKNALEDKDRGLGNYEINITDEAMDYL---CEVSSGDARTALNSLELAVL 213 Query: 225 SR 226 + Sbjct: 214 TS 215 >gi|319936498|ref|ZP_08010914.1| recombination protein rarA [Coprobacillus sp. 29_1] gi|319808613|gb|EFW05165.1| recombination protein rarA [Coprobacillus sp. 29_1] Length = 421 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 30/195 (15%), Positives = 71/195 (36%), Gaps = 29/195 (14%) Query: 67 VILVGPSGSGKSCLANIWSDK---------SRSTRFSNIAKSLDSILIDTRKPVLLEDID 117 IL GP G GK+ LA+ ++ + + + ++ + V+++++ Sbjct: 42 TILYGPPGCGKTTLASALANDLNIPYRIFNASTGNKKEMDIIIEEAKMSGELFVIIDEVH 101 Query: 118 LLDFN--DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 L+ + D L HI N L++ T + P + SR ++++ D+ Sbjct: 102 RLNKDKQDHLLPHIEN------GLLVIAGCTTANPYHSINPAIRSR---CQIIEVKPLDE 152 Query: 176 DFLEKVIVKMFA-----DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA-LSRGMG 229 + + + + Q ++ + YI + S + ++ + L Sbjct: 153 EDIMSGLNHALNCENGLNHQFKVENGVLEYIAK---LSSGDIRYAYNCLEVASILCDADT 209 Query: 230 ITRSLAAEVLKETQQ 244 IT + + L + Sbjct: 210 ITLQMVKQSLTKANA 224 >gi|118466446|ref|YP_882617.1| recombination factor protein RarA [Mycobacterium avium 104] gi|118167733|gb|ABK68630.1| ATP/GTP-binding protein [Mycobacterium avium 104] Length = 446 Score = 52.8 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 38/195 (19%), Positives = 74/195 (37%), Gaps = 31/195 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVL--------L 113 IL GP GSGK+ LA + S + S K + +++ R +L + Sbjct: 64 AILYGPPGSGKTTLAALISQATGRRFEALSALSAGVKDVRAVIESARTALLRGEQTVLFI 123 Query: 114 EDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +++ L S + LL+ A T S+ V P L SR + ++++ Sbjct: 124 DEVHRFSKTQQDALL----SAVENRVVLLVAATTENPSFSVVAP-LLSR---SLILQLRP 175 Query: 173 PDDDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 D + V+ + D R + + + ++ R+ + A + + ++ A G Sbjct: 176 LSADDIRTVVRRAIDDPRGLGGRVPVAPEAVD-LLVRL--AAGDARRALTALEVAA-EAG 231 Query: 228 MGITRSLAAEVLKET 242 +T + L E Sbjct: 232 ESVTVQTVEQSLDEA 246 >gi|41407170|ref|NP_960006.1| recombination factor protein RarA [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395521|gb|AAS03389.1| hypothetical protein MAP_1072 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 450 Score = 52.5 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 38/195 (19%), Positives = 74/195 (37%), Gaps = 31/195 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVL--------L 113 IL GP GSGK+ LA + S + S K + +++ R +L + Sbjct: 68 AILYGPPGSGKTTLAALISQATGRRFEALSALSAGVKDVRAVIESARTALLRGEQTVLFI 127 Query: 114 EDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +++ L S + LL+ A T S+ V P L SR + ++++ Sbjct: 128 DEVHRFSKTQQDALL----SAVENRVVLLVAATTENPSFSVVAP-LLSR---SLILQLRP 179 Query: 173 PDDDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 D + V+ + D R + + + ++ R+ + A + + ++ A G Sbjct: 180 LSADDIRTVVRRAIDDPRGLGGRVPVAPEAVD-LLVRL--AAGDARRALTALEVAA-EAG 235 Query: 228 MGITRSLAAEVLKET 242 +T + L E Sbjct: 236 ESVTVQTVEQSLDEA 250 >gi|315425404|dbj|BAJ47069.1| replication factor C large subunit [Candidatus Caldiarchaeum subterraneum] Length = 409 Score = 52.5 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 82/207 (39%), Gaps = 37/207 (17%) Query: 48 AIEQAVRLIDSW-PSW----PSRVV-ILVGPSGSGKSCLANIWSD--------------- 86 ++AV+ W W PS+ +L GP+G GK+ L + ++ Sbjct: 19 GNKEAVQAFLEWMAGWEKGKPSKKAALLYGPAGVGKTSLVHAYASEKGYEVIETNASDFR 78 Query: 87 -KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD--FNDTQLFHIINSIHQYDSSLLMT 143 + R A + S+ + RK +L++++D +D + + + + I + +++ Sbjct: 79 TRENIERIVGAASGMASLTMGQRKIILVDEVDGIDARADAGAVTSLADIISKTHVPVVLV 138 Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVK---ISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 A W L L A +++ I P + + K+ A + + + + Sbjct: 139 ANDP---WDPRLAPLR---DACLMIQFRRIPKPS---VAAHLKKIAAAENVRVPEDVLRR 189 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRG 227 IV+ E L A + +M + AL G Sbjct: 190 IVENSEGDLRSAINDL-QMASAALEMG 215 >gi|68249823|ref|YP_248935.1| recombination factor protein RarA [Haemophilus influenzae 86-028NP] gi|68058022|gb|AAX88275.1| predicted ATPase related to the helicase subunit of the holliday junction resolvase [Haemophilus influenzae 86-028NP] Length = 446 Score = 52.5 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 45/204 (22%), Positives = 82/204 (40%), Gaps = 37/204 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI-----------LIDTRKPVLL 113 +IL GP G+GK+ LA I + + + R S + + I L D + + + Sbjct: 53 MILWGPPGTGKTTLAEIIAQRINAEVERISAVTSGIKEIREAIDRAKQNRLADRKTILFV 112 Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++ + + F HI + + + + A T S+ + L SR A V + Sbjct: 113 DEVHRFNKSQQDAFLPHI-----EDGTVIFIGATTENPSFELNNA-LLSR---ARVYVLK 163 Query: 172 LPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERS----LVFAEKLVDKMD 220 +E+V+ + D R + +++ L + + + L E +VD D Sbjct: 164 SLTTAEIEQVLQQAVEDPERGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMAD 223 Query: 221 NLALSRGMGITRSLAAEVLKETQQ 244 + G I R+L EVL E Q Sbjct: 224 E--MENGKKIDRTLLKEVLGERQA 245 >gi|282891290|ref|ZP_06299792.1| hypothetical protein pah_c050o063 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498787|gb|EFB41104.1| hypothetical protein pah_c050o063 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 419 Score = 52.5 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 36/151 (23%), Positives = 67/151 (44%), Gaps = 22/151 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP+G+GK+ +A +++ + + S + K V+ E + F T L Sbjct: 42 IILWGPAGTGKTSIARLYAQ---AFNIPFQSLSAIFSGVADLKKVVKEAEERPLFKGTLL 98 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLP 173 F H N + S +L+ A S L D L SR + V+K++ Sbjct: 99 FVDEIHRFNKAQQDAFLPFLEKGSIVLIGATVENPS--FYLNDALLSRTR---VLKLNPL 153 Query: 174 DDDFLEKVIVKMFAD-RQIFIDKKLAAYIVQ 203 DD LE+++ + +++ +D + Y++Q Sbjct: 154 DDIALEQLLQRYETRVKKLNLDDQARRYLIQ 184 >gi|188581385|ref|YP_001924830.1| ATPase AAA [Methylobacterium populi BJ001] gi|179344883|gb|ACB80295.1| AAA ATPase central domain protein [Methylobacterium populi BJ001] Length = 462 Score = 52.5 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 35/203 (17%), Positives = 75/203 (36%), Gaps = 29/203 (14%) Query: 67 VILVGPSGSGKSCLANIWSD--------KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL 118 ++L GP G+GK+ + + + + + + + + V+LED+DL Sbjct: 232 LLLYGPPGTGKTHVIRYIASNLPERTTVLITAEQVAQLDRYMLLARTLQPSIVVLEDVDL 291 Query: 119 LDFN---------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA- 165 + + + L ++N + + L + P L SR Sbjct: 292 VGRSREGMNSPKTEVLLNRLLNEMDGLREDAEVLFILTTNRPDEIEEA---LASRPGRVD 348 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME-RSLVFAEKLVDKMDNLAL 224 ++I+ PD +V ++ R + + IV R E S F ++++ ++ A+ Sbjct: 349 EAIEIANPD-TVCRSRLVTLYG-RALAFEDGAIEAIVDRSEGASAAFIKEMIRRLAQAAI 406 Query: 225 SRGM--GITRSLAAEVLKETQQC 245 G +T + +L E Sbjct: 407 DSGSDNRVTVATVDAILGEAVGS 429 >gi|190405439|gb|EDV08706.1| protein AFG2 [Saccharomyces cerevisiae RM11-1a] Length = 780 Score = 52.5 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 63/178 (35%), Gaps = 45/178 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P R ++L GP G+GK+ L + ++ S + + S+ S + + L Sbjct: 278 PPRGILLHGPPGTGKTMLLRVVANTSNAHVLTINGPSIVSKYLGETEAALRDIFNEARKY 337 Query: 113 ------LEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 +++ID + N L +++ + +++ A P S Sbjct: 338 QPSIIFIDEIDSIAPNRANDDSGEVESRVVATLLTLMDGMGAAGKVVVIAATNRPNSVDH 397 Query: 154 CLP-----DLCSRLKAATVVKISLPDDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQ 203 L D V+I +PD D ++ K F+ + +D + YI Sbjct: 398 ALRRPGRFD--------QEVEIGIPDVDARFDILTKQFSRMSSDRHVLDSEAIKYIAS 447 >gi|169334179|ref|ZP_02861372.1| hypothetical protein ANASTE_00575 [Anaerofustis stercorihominis DSM 17244] gi|169258896|gb|EDS72862.1| hypothetical protein ANASTE_00575 [Anaerofustis stercorihominis DSM 17244] Length = 482 Score = 52.5 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 43/211 (20%), Positives = 84/211 (39%), Gaps = 48/211 (22%) Query: 24 KEEQLFFSFPRCLGISRDDL--------LVHSA---IEQAVRLIDSWPSWPSRVVILVGP 72 +EEQL P + + ++L +V R+I++ +IL GP Sbjct: 52 REEQLKTKAPLAVRMRPENLDEFFGQEHIVGEGKLLN----RMIEADR---ISSIILFGP 104 Query: 73 SGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ---LF-- 127 +G GK+ LA I ++K+ S +S A + + ++E+ + + LF Sbjct: 105 AGCGKTTLARIIANKTSSYFYSLNAVTCGVKDVRE----IIENAKANLGMERKKSILFID 160 Query: 128 --HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 H N + + +L+ A T + + P L SR +T+ K+ + + Sbjct: 161 EIHRFNKSQQDALLPSVEDGTIILIGATTENPFFEINSP-LISR---STLFKLKKIEKED 216 Query: 178 LEKVIVKMF--ADRQI-----FIDKKLAAYI 201 + K+I +R + ID++ Y+ Sbjct: 217 VRKIIENTLKNKERGLGNYDIQIDEEAIDYL 247 >gi|3136020|emb|CAA19102.1| hypothetical protein MLCB1259.27 [Mycobacterium leprae] Length = 447 Score = 52.5 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 39/197 (19%), Positives = 77/197 (39%), Gaps = 32/197 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVL--------L 113 IL GP G GK+ LA + S + S K + ++L R +L + Sbjct: 64 AILHGPPGCGKTTLAALISQATGHRFEALSALSAGVKDVRAVLKIARSALLSGKRTVLFI 123 Query: 114 EDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +++ L S + LL+ A T S+ V P L SR + ++++ Sbjct: 124 DEVHRFSKTQQDALL----SAVENRVVLLVAATTENPSFSVVAP-LLSR---SLILQLRP 175 Query: 173 PDDDFLEKVIVKMFAD-R----QIFIDKKLAAYIVQRMERSLVFAEKLVDKMD--NLALS 225 + D + V+ + D R QI + + ++ R+ + A +++ ++ A+ Sbjct: 176 LNADDIRAVVQRAVDDPRGLGGQIAVAPEAVD-LLVRL--AAGDARRVLTALEVAAEAVQ 232 Query: 226 RGMGITRSLAAEVLKET 242 G +T + + L Sbjct: 233 TGDELTVATIEQSLDNA 249 >gi|227873104|ref|ZP_03991398.1| crossover junction endodeoxyribonuclease ATPase [Oribacterium sinus F0268] gi|227841085|gb|EEJ51421.1| crossover junction endodeoxyribonuclease ATPase [Oribacterium sinus F0268] Length = 421 Score = 52.5 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 33/199 (16%), Positives = 74/199 (37%), Gaps = 29/199 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++ GP G+GK+ LA + ++ S++ A + ++ E++ T L Sbjct: 55 LLFFGPPGTGKTSLAKVIANSSKADFIPINATTAGKKDMEEAVARAKENM-GGYGRKTIL 113 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N + + +L+ A T + V L SR + + ++ Sbjct: 114 FVDEIHRFNKAQQDYLLPHVEEGTIILIGATTENPYFEVNTA-LLSR---SQLFELHSLK 169 Query: 175 DDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 + + K++ D R + ++++ ++ + A ++ ++ LS Sbjct: 170 KEDIVKLLQTATQDKTRGMGNYNAVLEEEACDFLAEHA---FGDARVALNALELAILSTN 226 Query: 228 MGIT--RSLAAEVLKETQQ 244 T + EV+ E Q Sbjct: 227 PSATGEIRITKEVVAECMQ 245 >gi|219883123|ref|YP_002478285.1| IstB domain protein ATP-binding protein [Cyanothece sp. PCC 7425] gi|219883240|ref|YP_002478402.1| IstB domain protein ATP-binding protein [Cyanothece sp. PCC 7425] gi|219867248|gb|ACL47586.1| IstB domain protein ATP-binding protein [Cyanothece sp. PCC 7425] gi|219867365|gb|ACL47703.1| IstB domain protein ATP-binding protein [Cyanothece sp. PCC 7425] Length = 236 Score = 52.5 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 57/155 (36%), Gaps = 37/155 (23%) Query: 25 EEQLF-------FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGK 77 E QL F F C + L+ + QA + + IL+GPSG GK Sbjct: 44 EAQLPAAKSFTNFDFSHCPQFNPAPLM---QLAQATDWLARAQNC-----ILLGPSGVGK 95 Query: 78 SCLAN--------------IWSDKSRSTRFSNIAKSLDSIL----IDTRKPVLLEDIDLL 119 + LA ++ + + + L +D ++L+D+ + Sbjct: 96 THLAASLARRCIELGKRVKFFAATALVQQLQDAKLQLQLYPLLKKLDRYDLLVLDDLGYV 155 Query: 120 DFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSW 151 N+T+ LF +I + SLL+TA W Sbjct: 156 KKNETETSVLFELI-AHRYERKSLLITANQPFSQW 189 >gi|229847091|ref|ZP_04467196.1| recombination factor protein RarA [Haemophilus influenzae 7P49H1] gi|229809920|gb|EEP45641.1| recombination factor protein RarA [Haemophilus influenzae 7P49H1] Length = 446 Score = 52.5 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 46/204 (22%), Positives = 82/204 (40%), Gaps = 37/204 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI-----------LIDTRKPVLL 113 +IL GP G+GK+ LA I + + + R S + + I L D + + + Sbjct: 53 MILWGPPGTGKTTLAEIIAQRINAEVERISAVTSGIKEIREAIDRAKQNRLADRKTILFV 112 Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++ + + F HI + S + + A T S+ + L SR A V + Sbjct: 113 DEVHRFNKSQQDAFLPHI-----EDGSVIFIGATTENPSFELNNA-LLSR---ARVYVLK 163 Query: 172 LPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERS----LVFAEKLVDKMD 220 +E+V+ + D R + +++ L + + + L E +VD D Sbjct: 164 SLTTAEIEQVLQQAVEDPERGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMAD 223 Query: 221 NLALSRGMGITRSLAAEVLKETQQ 244 + G I R+L EVL E Q Sbjct: 224 E--MENGKKIDRTLLKEVLGERQA 245 >gi|161527523|ref|YP_001581349.1| ATPase AAA [Nitrosopumilus maritimus SCM1] gi|160338824|gb|ABX11911.1| AAA family ATPase, CDC48 subfamily [Nitrosopumilus maritimus SCM1] Length = 713 Score = 52.5 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 65/159 (40%), Gaps = 33/159 (20%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILIDTRKP 110 V+L GP G+GK+ LA + ++ + S I + + ++ Sbjct: 214 VLLYGPPGTGKTLLAKAVAGETNAHFISLSGPEIMGKYYGESEEKIREIFNQAEENSPSI 273 Query: 111 VLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158 + +++ID + ++ +QL +++ + +++ A P S P L Sbjct: 274 IFIDEIDSIAPKRDEVSGEVEKRIVSQLLTLMDGMKSRGKVVVIAATNRPDSID---PAL 330 Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 + ++I +PDD+ +++ R + ID+K+ Sbjct: 331 RRPGRFDREIEIGIPDDEGRFEIL--SIHTRGMPIDEKV 367 >gi|7476091|pir||T10001 replication initiation protein dnaA - Mycobacterium leprae (fragment) gi|1262352|emb|CAA94708.1| DnaA [Mycobacterium leprae] Length = 198 Score = 52.5 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 38/90 (42%), Gaps = 1/90 (1%) Query: 154 CLPD-LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 L D L +R + + + P+ + ++ K ++ + + I +ER++ Sbjct: 4 TLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPGDVLELIASSIERNIREL 63 Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKET 242 E + ++ A I ++LA VL++ Sbjct: 64 EGALIRVTAFASLNKTAIDKALAEIVLRDL 93 >gi|145219908|ref|YP_001130617.1| recombination factor protein RarA [Prosthecochloris vibrioformis DSM 265] gi|145206072|gb|ABP37115.1| Recombination protein MgsA [Chlorobium phaeovibrioides DSM 265] Length = 445 Score = 52.5 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 75/201 (37%), Gaps = 34/201 (16%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKP--------V 111 +I GP G+GK+ LA I + + K + L D + Sbjct: 62 PSMIFWGPPGTGKTTLAEICASALGFRFETLSAIDSGVKEVRRALSDAASARERGERTIL 121 Query: 112 LLEDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 +++I + L H I + +L+ A T S+ V L SR++ V + Sbjct: 122 FIDEIHRFNKAQQDTLLHAI----EQGVVVLIGATTENPSFEVNAA-LLSRMQ---VYIL 173 Query: 171 SLPDDDFLEKVIVK------MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL-A 223 +D + +I + +FA R++ ++ ++++ A K ++ ++ + Sbjct: 174 KPLTEDDIASLIQRAMDGDSLFASRKVELED--PGFLLRFAG---GDARKALNALEAAMS 228 Query: 224 LSRGMGITRSLAAEVLKETQQ 244 L L A+V + Q Sbjct: 229 LVPEGDGPVQLTADVFERALQ 249 >gi|120403620|ref|YP_953449.1| recombination factor protein RarA [Mycobacterium vanbaalenii PYR-1] gi|119956438|gb|ABM13443.1| Recombination protein MgsA [Mycobacterium vanbaalenii PYR-1] Length = 429 Score = 52.5 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 76/195 (38%), Gaps = 31/195 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKP--------VLL 113 VIL GP G+GK+ LA++ S + + K + +++ R+ + + Sbjct: 50 VILYGPPGTGKTTLASMISQATGRRFEALSALAAGVKEVRAVIDVARQASMRGEQTVLFI 109 Query: 114 EDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +++ L + + LL+ A T S+ V P L SR + ++++ Sbjct: 110 DEVHRFSKTQQDALL----AAVENRVVLLVAATTENPSFSVVAP-LLSR---SLILQLQP 161 Query: 173 PDDDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 + + VI + D R + + + +VQ S A + + ++ + G Sbjct: 162 LTPEDVTTVIRRAIEDPRGLGGKVAVTDEAVDQLVQ---LSAGDARRALTALEVAS-ESG 217 Query: 228 MGITRSLAAEVLKET 242 +T + + L + Sbjct: 218 EEVTVEVIEQSLDKA 232 >gi|323474695|gb|ADX85301.1| AAA ATPase central domain protein [Sulfolobus islandicus REY15A] gi|323477429|gb|ADX82667.1| AAA ATPase central domain protein [Sulfolobus islandicus HVE10/4] Length = 405 Score = 52.5 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 73/187 (39%), Gaps = 31/187 (16%) Query: 54 RLIDSWPSW-PSRVVIL-VGPSGSGKSCLANIWSDKSRSTR----------------FSN 95 I+SW + P+ +L GP G GK+ LA + + Sbjct: 28 EWIESWLNGKPNAKAVLLHGPPGVGKTTLAEALAHDYNLELLEMNASDSRKLQDIKSVAE 87 Query: 96 IAKSLDSILIDTRKPVLLEDIDLLDFNDT--QLFHIINSIHQYDSSLLMTARTFPVSWGV 153 A SI K +LL+++D ++ + + I+ I + ++MTA W Sbjct: 88 KASVYGSIFGTRGKLILLDEVDGINVREDTGAIQGILELIEKTKYPIIMTANDP---WNP 144 Query: 154 CLPDLCSRLKAATVVKISL-PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 L +L ++ K + K+ P L +++ K+ +I D + YI ++ S A Sbjct: 145 ALRELRNKTKMVGLNKLGKYP----LRRLLKKICQAEKIICDDEALNYI---IDTSEGDA 197 Query: 213 EKLVDKM 219 ++ + Sbjct: 198 RYAINML 204 >gi|323525162|ref|YP_004227315.1| MgsA AAA+ ATPase-like protein [Burkholderia sp. CCGE1001] gi|323382164|gb|ADX54255.1| MgsA AAA+ ATPase-like protein [Burkholderia sp. CCGE1001] Length = 437 Score = 52.5 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 73/191 (38%), Gaps = 24/191 (12%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA + +D + + ++ S + D R+ V I + + T + Sbjct: 48 MILWGPPGVGKTTLARLMADAFHAQFIA--LSAVLSGVKDIREAVETAQIHRANGHQTLV 105 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N + + + A T S+ V L SR A V + D Sbjct: 106 FVDEVHRFNKSQQDAFLPHVESGLFVFIGATTENPSFEVNSA-LLSR---AAVYVLKSLD 161 Query: 175 DDFLEKVIVK-MFADRQIFIDKKLAAYIVQRME---RSLVFAEKLVDKMDNLALSRGMGI 230 +D L +++ + + + ++ + R L+ ++V + + + I Sbjct: 162 EDELRELLERAQHELGGLTFTDEARDALIGSADGDGRKLLNNLEIVAR--AASQQKKTEI 219 Query: 231 TRSLAAEVLKE 241 +L L E Sbjct: 220 DGALLGSALAE 230 >gi|261403322|ref|YP_003247546.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus vulcanius M7] gi|261370315|gb|ACX73064.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus vulcanius M7] Length = 903 Score = 52.5 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 36/231 (15%), Positives = 84/231 (36%), Gaps = 57/231 (24%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + V+LVGP G+GK+ LA ++++ + + N+ K + + Sbjct: 212 PPKGVLLVGPPGTGKTLLAKAVANEAGANFYVINGPEIMSKYVGETEENLRKIFEEAEEN 271 Query: 107 TRKPVLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + ++++D + ++ QL +++ + +++ A P + Sbjct: 272 APSIIFIDELDAIAPKRDEASGEVERRLVAQLLTLMDGLKGRGQVVVIGATNRPNALD-- 329 Query: 155 LPDLC--SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYI--VQRM---- 205 P L R V I +PD + ++++ R + + + + Y+ V Sbjct: 330 -PALRRPGRFDREIV--IGVPDREGRKEILQ--IHTRNMPLAEDVDLDYLADVTHGFVGA 384 Query: 206 -------ERSLVFAEKLVDKMDNLALSRGM------GITRSLAAEVLKETQ 243 E ++ +++ +D A +T E LKE + Sbjct: 385 DLAALCKEAAMRALRRVLPSIDLEAEEIPKEVLDNLKVTMDDFKEALKEVE 435 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 63/165 (38%), Gaps = 36/165 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTR-- 108 P + V+L GP G+GK+ LA +++S + S K++ I R Sbjct: 485 PPKGVLLFGPPGTGKTLLAKAVANESGANFISVKGPEIFSKWVGESEKAIREIFRKARQS 544 Query: 109 KPVLL--EDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 P ++ ++ID + QL ++ + + +++ A P Sbjct: 545 APCIIFFDEIDAIAPKRGRDLSSAVTDKVVNQLLTELDGMEEPKDVIVIAATNRPDIIDS 604 Query: 154 CLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L L RL V+ + +PD+ ++ R + +D+ + Sbjct: 605 AL--LRPGRLD--RVILVPVPDEKARLDIL--KIHTRSMNLDEDV 643 >gi|227830341|ref|YP_002832121.1| replication factor C large subunit [Sulfolobus islandicus L.S.2.15] gi|229579158|ref|YP_002837556.1| replication factor C large subunit [Sulfolobus islandicus Y.G.57.14] gi|284997766|ref|YP_003419533.1| AAA ATPase, central domain protein [Sulfolobus islandicus L.D.8.5] gi|259585236|sp|C3MQ13|RFCL_SULIL RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|259585591|sp|C3NE95|RFCL_SULIY RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|227456789|gb|ACP35476.1| AAA ATPase central domain protein [Sulfolobus islandicus L.S.2.15] gi|228009872|gb|ACP45634.1| AAA ATPase central domain protein [Sulfolobus islandicus Y.G.57.14] gi|284445661|gb|ADB87163.1| AAA ATPase, central domain protein [Sulfolobus islandicus L.D.8.5] Length = 405 Score = 52.5 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 73/187 (39%), Gaps = 31/187 (16%) Query: 54 RLIDSWPSW-PSRVVIL-VGPSGSGKSCLANIWSDKSRSTR----------------FSN 95 I+SW + P+ +L GP G GK+ LA + + Sbjct: 28 EWIESWLNGKPNAKAVLLHGPPGVGKTTLAEALAHDYNLELLEMNASDSRKLQDIKGVAE 87 Query: 96 IAKSLDSILIDTRKPVLLEDIDLLDFNDT--QLFHIINSIHQYDSSLLMTARTFPVSWGV 153 A SI K +LL+++D ++ + + I+ I + ++MTA W Sbjct: 88 KASVYGSIFGTRGKLILLDEVDGINVREDTGAIQGILELIEKTKYPIIMTANDP---WNP 144 Query: 154 CLPDLCSRLKAATVVKISL-PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 L +L ++ K + K+ P L +++ K+ +I D + YI ++ S A Sbjct: 145 ALRELRNKTKMVGLNKLGKYP----LRRLLKKICQAEKIICDDEALNYI---IDTSEGDA 197 Query: 213 EKLVDKM 219 ++ + Sbjct: 198 RYAINML 204 >gi|296170787|ref|ZP_06852359.1| AAA family ATPase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894602|gb|EFG74339.1| AAA family ATPase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 451 Score = 52.5 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 49/212 (23%), Positives = 84/212 (39%), Gaps = 44/212 (20%) Query: 30 FSFPRCLGISRDDLLVHSAIEQAVRL----IDS--------WPSWPSRVVI--------- 68 F P S L V + AVR+ +D P P R ++ Sbjct: 10 FDLPGAAPASDHGLGVSAGAPLAVRMRPASLDEVVGQEHLLAPGSPLRRLVEGSGMASVI 69 Query: 69 LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLF- 127 L GP GSGK+ LA + ++ + RF ++ +L + + D R + + LL+ T LF Sbjct: 70 LYGPPGSGKTTLAALI-SQATARRFEALS-ALSAGVKDVRAVIDVARRALLNGEQTVLFI 127 Query: 128 ---HIIN--------SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 H + S + LL+ A T S+ V P L SR + ++++ D D Sbjct: 128 DEVHRFSKTQQDALLSAVENRVVLLVAATTENPSFSVVAP-LLSR---SLILQLRPLDAD 183 Query: 177 FLEKVIVKMFAD-RQI----FIDKKLAAYIVQ 203 + V+ + D R + + + +V+ Sbjct: 184 DIRAVVRRAIDDPRGLGGRVAVTPEAVDLLVR 215 >gi|256810701|ref|YP_003128070.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus fervens AG86] gi|256793901|gb|ACV24570.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus fervens AG86] Length = 903 Score = 52.5 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 36/231 (15%), Positives = 84/231 (36%), Gaps = 57/231 (24%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + V+LVGP G+GK+ LA ++++ + + N+ K + + Sbjct: 212 PPKGVLLVGPPGTGKTLLAKAVANEAGANFYVINGPEIMSKYVGETEENLRKIFEEAEEN 271 Query: 107 TRKPVLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + ++ QL +++ + +++ A P + Sbjct: 272 APSIIFIDEIDAIAPKRDEATGEVERRLVAQLLTLMDGLKGRGQVVVIGATNRPNALD-- 329 Query: 155 LPDLC--SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYI--VQRM---- 205 P L R V I +PD + ++++ R + + + + Y+ V Sbjct: 330 -PALRRPGRFDREIV--IGVPDREGRKEILQ--IHTRNMPLAEDVDLDYLADVTHGFVGA 384 Query: 206 -------ERSLVFAEKLVDKMDNLALSRGM------GITRSLAAEVLKETQ 243 E ++ +++ +D A +T E LK+ + Sbjct: 385 DLAALCKEAAMRALRRVLPSIDLEAEEIPKEVLDNLKVTMDDFKEALKDVE 435 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 20/32 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + V+L GP G+GK+ LA +++S + S Sbjct: 485 PPKGVLLFGPPGTGKTLLAKAVANESGANFIS 516 >gi|238619813|ref|YP_002914639.1| replication factor C large subunit [Sulfolobus islandicus M.16.4] gi|259585253|sp|C4KHA7|RFCL_SULIK RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|238380883|gb|ACR41971.1| AAA ATPase central domain protein [Sulfolobus islandicus M.16.4] Length = 405 Score = 52.5 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 73/187 (39%), Gaps = 31/187 (16%) Query: 54 RLIDSWPSW-PSRVVIL-VGPSGSGKSCLANIWSDKSRSTR----------------FSN 95 I+SW + P+ +L GP G GK+ LA + + Sbjct: 28 EWIESWLNGKPNAKAVLLHGPPGVGKTTLAEALAHDYNLELLEMNASDSRKLQDIKSVAE 87 Query: 96 IAKSLDSILIDTRKPVLLEDIDLLDFNDT--QLFHIINSIHQYDSSLLMTARTFPVSWGV 153 A SI K +LL+++D ++ + + I+ I + ++MTA W Sbjct: 88 KASVYGSIFGTRGKLILLDEVDGINVREDTGAIQGILELIEKTKYPIIMTANDP---WNP 144 Query: 154 CLPDLCSRLKAATVVKISL-PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 L +L ++ K + K+ P L +++ K+ +I D + YI ++ S A Sbjct: 145 ALRELRNKTKMVGLNKLGKYP----LRRLLKKICQAEKIICDDEALNYI---IDTSEGDA 197 Query: 213 EKLVDKM 219 ++ + Sbjct: 198 RYAINML 204 >gi|312795386|ref|YP_004028308.1| ATPase AAA [Burkholderia rhizoxinica HKI 454] gi|312167161|emb|CBW74164.1| ATPase, AAA family [Burkholderia rhizoxinica HKI 454] Length = 438 Score = 52.5 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 60/175 (34%), Gaps = 20/175 (11%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA + + + + ++ S + D R+ V L T + Sbjct: 48 MILWGPPGVGKTTLARLMAAAFHAEFIA--LSAVLSGVKDIREAVDLAQAHRARGRQTLV 105 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N + + + A T S+ V L SR A V + D Sbjct: 106 FVDEVHRFNKSQQDAFLPHVESGLFVFVGATTENPSFEVNSA-LLSR---AAVYVLKSLD 161 Query: 175 DDFLEKVIVKMFAD--RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 D ++ + FA+ + I ++ + V+ + A Sbjct: 162 DHEQRALLERAFAELGGGLTITDSARDALIGSADGDGRKLLNNVEIVARAAYRAK 216 >gi|223044087|ref|ZP_03614126.1| ATPase, AAA family [Staphylococcus capitis SK14] gi|222442481|gb|EEE48587.1| ATPase, AAA family [Staphylococcus capitis SK14] Length = 425 Score = 52.1 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 33/197 (16%), Positives = 73/197 (37%), Gaps = 33/197 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117 +I GP G GK+ +A S ++ + ++ ++ + + +LL++I Sbjct: 46 MIFYGPPGIGKTSIAKAISGSTQFKFRQLNAVTNTKKDMQMVVEEAKMSGQVILLLDEIH 105 Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 L D L H+ N +L+ T + P + SR A + ++ Sbjct: 106 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 154 Query: 174 DDDFLEKVIVKMF--ADRQIF-----IDKKLAAYIVQRMERSLVFAEKLVDK--MDNLAL 224 DD + + + +DR + +D+ Y + + + A ++ + + Sbjct: 155 DDHDVRIALDRAIEDSDRGLKSYHPIVDEDAMEYFSTQSQGDVRSALNALELAVLSAEVV 214 Query: 225 SRGMGITRSLAAEVLKE 241 IT A + L++ Sbjct: 215 KNQRHITLDDAKDCLQK 231 >gi|291280753|ref|YP_003497587.1| hypothetical protein DEFDS_P211 [Deferribacter desulfuricans SSM1] gi|290755455|dbj|BAI81831.1| hypothetical protein [Deferribacter desulfuricans SSM1] Length = 535 Score = 52.1 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 3/52 (5%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSR---VVILVGPSGSGKSCLANI 83 + D+ +V ++ E A I + R V+L GP+G GKS L + Sbjct: 144 TPQYTFDNFIVDTSNELAYHYIKNIAENKLRDGLTVLLYGPTGLGKSHLLHA 195 >gi|284931012|gb|ADC30950.1| chromosomal replication initiator protein DnaA [Mycoplasma gallisepticum str. F] Length = 461 Score = 52.1 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 36/206 (17%), Positives = 70/206 (33%), Gaps = 37/206 (17%) Query: 29 FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPS------WPSRVVILVGPSGSGKSCLAN 82 S + + LV ++AV L + W +I+ G G GKS L Sbjct: 116 PLSKGIKEKYNFGNYLVFEFNKEAVYLAKQIANKTTHSNW--NPIIIEGKPGYGKSHLLQ 173 Query: 83 IWSDKSR--------STRFSNIAKSLDSILIDTRKPVLLE-------DIDLLDFND---- 123 +++ + S+ S + P +E D DLL +D Sbjct: 174 AIANERQKLFPEEKICVLSSDDFGSEFLKSVIAPDPTHIESFKSKYKDYDLLMIDDVQII 233 Query: 124 -------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL-PDLCSRLKAATVVKISLPDD 175 F I NS+ ++++T L + SR + V+I+ P+ Sbjct: 234 SNRPKTNETFFTIFNSLVDQKKTIVITLDCKIEEIQDKLTARMISRFQKGINVRINQPNK 293 Query: 176 DFLEKVIVKMFADRQIF--IDKKLAA 199 + + ++ + F + + +D + Sbjct: 294 NEIIQIFKQKFKENNLEKYMDDHVIE 319 >gi|31544207|ref|NP_852785.1| chromosomal replication initiator protein DnaA [Mycoplasma gallisepticum str. R(low)] gi|31541051|gb|AAP56353.1| chromosomal replication initiator protein DnaA [Mycoplasma gallisepticum str. R(low)] gi|284930245|gb|ADC30184.1| chromosomal replication initiator protein DnaA [Mycoplasma gallisepticum str. R(high)] Length = 461 Score = 52.1 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 36/206 (17%), Positives = 70/206 (33%), Gaps = 37/206 (17%) Query: 29 FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPS------WPSRVVILVGPSGSGKSCLAN 82 S + + LV ++AV L + W +I+ G G GKS L Sbjct: 116 PLSKGIKEKYNFGNYLVFEFNKEAVYLAKQIANKTTHSNW--NPIIIEGKPGYGKSHLLQ 173 Query: 83 IWSDKSR--------STRFSNIAKSLDSILIDTRKPVLLE-------DIDLLDFND---- 123 +++ + S+ S + P +E D DLL +D Sbjct: 174 AIANERQKLFPEEKICVLSSDDFGSEFLKSVIAPDPTHIESFKSKYKDYDLLMIDDVQII 233 Query: 124 -------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL-PDLCSRLKAATVVKISLPDD 175 F I NS+ ++++T L + SR + V+I+ P+ Sbjct: 234 SNRPKTNETFFTIFNSLVDQKKTIVITLDCKIEEIQDKLTARMISRFQKGINVRINQPNK 293 Query: 176 DFLEKVIVKMFADRQIF--IDKKLAA 199 + + ++ + F + + +D + Sbjct: 294 NEIIQIFKQKFKENNLEKYMDDHVIE 319 >gi|325282636|ref|YP_004255177.1| AAA ATPase central domain-containing protein [Deinococcus proteolyticus MRP] gi|324314445|gb|ADY25560.1| AAA ATPase central domain protein [Deinococcus proteolyticus MRP] Length = 429 Score = 52.1 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 64/175 (36%), Gaps = 25/175 (14%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA + + + S A S + + D R+ VL + T Sbjct: 45 PSLILWGPPGVGKTTLARLVAGEVGSHFIGLSAVS--AGVKDVREAVLEAEARRGRGQKT 102 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + L+ A T S+ V P L SR A + + Sbjct: 103 VLFLDEIHRFNKAQQDALLPHVESGLLTLIGATTENPSFEVN-PALRSR---ARTLVLEA 158 Query: 173 PDDDFLEKVIVKMFAD-RQI---FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 D + ++ + D R + ++ + + + + + + ++ A Sbjct: 159 LSKDDIRALLERALTDPRGLEGVRMEPEALELLARLAD---GDGRRALGTLEAAA 210 >gi|212224263|ref|YP_002307499.1| Hypothetical CDC48/VCP [Thermococcus onnurineus NA1] gi|212009220|gb|ACJ16602.1| Hypothetical CDC48/VCP [Thermococcus onnurineus NA1] Length = 797 Score = 52.1 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 33/212 (15%), Positives = 79/212 (37%), Gaps = 37/212 (17%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109 P + V+L GP G+GK+ LA ++++ + + + L + + + Sbjct: 215 PPKGVLLYGPPGTGKTLLAKAVANEANAHFIAINGPEIMSKYYGESEERLREVFKEAEEN 274 Query: 110 ---PVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + +++ A P + Sbjct: 275 APAIIFIDEIDAIAPKREETHGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDAID-- 332 Query: 155 LPDLC--SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 P L R ++ +PD ++++ R + I+ + V+++ +L Sbjct: 333 -PALRRPGRFDREL--EVGVPDKQGRKEILQ--IHTRGMPIEPEFRVSKVKKILENLRGD 387 Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 E+ D +D T E+L+E + Sbjct: 388 ERFRDVIDRAIEKVERAKTEEEVKEILRELDE 419 Score = 42.8 bits (100), Expect = 0.044, Method: Composition-based stats. Identities = 31/215 (14%), Positives = 72/215 (33%), Gaps = 45/215 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106 P + ++L GP G+GK+ LA + +S + + NI + Sbjct: 550 PPKGILLYGPPGTGKTLLAKAVATESEANFIAIRGPEVLSKWVGESEKNIREIFRKARQA 609 Query: 107 TRKPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL ++ I + +++ A P Sbjct: 610 APTVIFIDEIDAIAPRRGTDVNRVTDRLINQLLTEMDGIAENSGVVVIAATNRPDIIDPA 669 Query: 155 LPDLC----SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRME-RS 208 L L RL + + PD+ ++ + R + + + + + +R E + Sbjct: 670 L--LRPGRFDRL-----ILVPAPDE--KARLEIFKVHTRNVPLAEDISLEELARRTEGYT 720 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 +V + L+ + + +K + Sbjct: 721 GADIAAVVRE--AAMLAMRKALQEGVIKPGMKADE 753 >gi|301156050|emb|CBW15521.1| recombination protein [Haemophilus parainfluenzae T3T1] Length = 446 Score = 52.1 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 42/202 (20%), Positives = 84/202 (41%), Gaps = 33/202 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI-----------LIDTRKPVLL 113 +IL GP G+GK+ LA I +++ + R S + + I L D + + + Sbjct: 53 MILWGPPGTGKTTLAEIIANRINAEVERISAVTSGVKEIRESIERAKQNRLADRQTILFV 112 Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++ + + F HI + + + + A T S+ + L SR A V + Sbjct: 113 DEVHRFNKSQQDAFLPHI-----EDGTIIFIGATTENPSFELNNA-LLSR---ARVYLLK 163 Query: 172 LPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNLA 223 +E+V+ + +D R + +++ L + + + A ++ M D + Sbjct: 164 SLTIAEIEQVLKQAISDPERGLGKERLVLEENLLQVLAEYVNGDARLALNCLELMVDMAS 223 Query: 224 LSR-GMGITRSLAAEVLKETQQ 244 + G + R+L EVL E Q Sbjct: 224 EAENGKKLDRTLLKEVLGERQA 245 >gi|315427366|dbj|BAJ48976.1| replication factor C large subunit [Candidatus Caldiarchaeum subterraneum] Length = 409 Score = 52.1 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 82/207 (39%), Gaps = 37/207 (17%) Query: 48 AIEQAVRLIDSW-PSW----PSRVV-ILVGPSGSGKSCLANIWS---------------- 85 ++AV+ W W PS+ +L GP+G GK+ L + ++ Sbjct: 19 GNKEAVQAFLEWMAGWEKGKPSKKAALLYGPAGVGKTSLVHAYAYEKGYEVIETNASDFR 78 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD--FNDTQLFHIINSIHQYDSSLLMT 143 + R A + S+ + RK +L++++D +D + + + + I + +++ Sbjct: 79 TRENIERIVGAASGMASLTMGQRKIILVDEVDGIDARADAGAVTSLADIISKTHVPVVLV 138 Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVK---ISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 A W L L A +++ I P + + K+ A + + + + Sbjct: 139 ANDP---WDPRLAPLR---DACLMIQFRRIPKPS---VAAHLKKIAAAENVRVPEDVLRR 189 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRG 227 IV+ E L A + +M + AL G Sbjct: 190 IVENSEGDLRSAINDL-QMASAALEMG 215 >gi|110224493|emb|CAJ98744.1| replication initiator [Francisella tularensis subsp. mediasiatica] gi|110224495|emb|CAJ98745.1| replication initiator [Francisella tularensis subsp. mediasiatica] gi|110224503|emb|CAJ98749.1| replication initiator [Francisella tularensis subsp. tularensis ATCC 6223] gi|110224505|emb|CAJ98750.1| replication initiator [Francisella tularensis subsp. tularensis] gi|110224507|emb|CAJ98751.1| replication initiator [Francisella tularensis subsp. tularensis] gi|110224509|emb|CAJ98752.1| replication initiator [Francisella tularensis subsp. mediasiatica] gi|110224511|emb|CAJ98753.1| replication initiator [Francisella tularensis subsp. holarctica] gi|110224513|emb|CAJ98754.1| replication initiator [Francisella tularensis subsp. holarctica] gi|110224515|emb|CAJ98755.1| replication initiator [Francisella tularensis subsp. holarctica] Length = 157 Score = 52.1 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 5/97 (5%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN 82 E+ F P D +V A + A P ++ + + G SG GK+ L Sbjct: 40 EEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLHNPLFIYGGSGLGKTHLMQ 99 Query: 83 IWSDKSRSTRFSN--IAKSLDSILIDTRKPVLLEDID 117 + +R + I + + + D + L+D D Sbjct: 100 AIGNHAREVNPNAKIIYTNSEQFIKDYVNSIRLQDQD 136 >gi|110224517|emb|CAJ98756.1| replication initiator [Francisella tularensis subsp. holarctica] Length = 157 Score = 52.1 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 5/97 (5%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN 82 E+ F P D +V A + A P ++ + + G SG GK+ L Sbjct: 40 EEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLHNPLFIYGGSGLGKTHLMQ 99 Query: 83 IWSDKSRSTRFSN--IAKSLDSILIDTRKPVLLEDID 117 + +R + I + + + D + L+D D Sbjct: 100 AIGNHAREVNPNAKIIYTNSEQFIKDYVNSIRLQDQD 136 >gi|110224519|emb|CAJ98757.1| replication initiator [Francisella tularensis subsp. holarctica] gi|110224521|emb|CAJ98758.1| replication initiator [Francisella tularensis subsp. holarctica] Length = 157 Score = 52.1 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 5/97 (5%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN 82 E+ F P D +V A + A P ++ + + G SG GK+ L Sbjct: 40 EEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLHNPLFIYGGSGLGKTHLMQ 99 Query: 83 IWSDKSRSTRFSN--IAKSLDSILIDTRKPVLLEDID 117 + +R + I + + + D + L+D D Sbjct: 100 AIGNHAREVNPNAKIIYTNSEQFIKDYVNSIRLQDQD 136 >gi|110224499|emb|CAJ98747.1| replication initiator [Francisella novicida] Length = 157 Score = 52.1 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 5/97 (5%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN 82 E+ F P D +V A + A P ++ + + G SG GK+ L Sbjct: 40 EEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLYNPLFIYGGSGLGKTHLMQ 99 Query: 83 IWSDKSRSTRFSN--IAKSLDSILIDTRKPVLLEDID 117 + +R + I + + + D + L+D D Sbjct: 100 AIGNHAREVNPNAKIIYTNSEQFIKDYVNSIRLQDQD 136 >gi|110224497|emb|CAJ98746.1| replication initiator [Francisella novicida] gi|110224501|emb|CAJ98748.1| replication initiator [Francisella novicida] Length = 157 Score = 52.1 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 5/97 (5%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN 82 E+ F P D +V A + A P ++ + + G SG GK+ L Sbjct: 40 EEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLHNPLFIYGGSGLGKTHLMQ 99 Query: 83 IWSDKSRSTRFSN--IAKSLDSILIDTRKPVLLEDID 117 + +R + I + + + D + L+D D Sbjct: 100 AIGNHAREVNPNAKIIYTNSEQFIKDYVNSIRLQDQD 136 >gi|110224523|emb|CAJ98759.1| replication initiator [Francisella novicida] gi|259236200|gb|ACW20340.1| DnaA [Francisella sp. FnSp1] Length = 157 Score = 52.1 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 5/97 (5%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLAN 82 E+ F P D +V A + A P ++ + + G SG GK+ L Sbjct: 40 EEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLHNPLFIYGGSGLGKTHLMQ 99 Query: 83 IWSDKSRSTRFSN--IAKSLDSILIDTRKPVLLEDID 117 + +R + I + + + D + L+D D Sbjct: 100 AIGNHAREVNPNAKIIYTNSEQFIKDYVNSIRLQDQD 136 >gi|110598474|ref|ZP_01386745.1| AAA ATPase, central region [Chlorobium ferrooxidans DSM 13031] gi|110339924|gb|EAT58428.1| AAA ATPase, central region [Chlorobium ferrooxidans DSM 13031] Length = 447 Score = 52.1 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 41/200 (20%), Positives = 71/200 (35%), Gaps = 32/200 (16%) Query: 65 RVVILVGPSGSGKSCLANIWSDK--SRSTRFSNIAKSLDSILIDTRKP-----------V 111 +I GP GSGK+ LA I + R + S I + + + Sbjct: 62 PSMIFWGPPGSGKTTLAEICAASLNYRFEQLSAIDSGVKDVRKALDNAQKSRASGLRTIL 121 Query: 112 LLEDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 +++I + L H I + +L+ A T S+ V L SR++ V + Sbjct: 122 FIDEIHRFNKGQQDTLLHAI----EQGLIVLIGATTENPSFEVNAA-LLSRMQ---VYIL 173 Query: 171 SLPDDDFLEKVIV------KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 + + VI ++F + QI I +++Q A V+ L+L Sbjct: 174 KPLQSEEILAVIRRALKEDRLFGELQIEIAD--PDFLLQFAGGDARKALNAVET--ALSL 229 Query: 225 SRGMGITRSLAAEVLKETQQ 244 L E+L+ Q Sbjct: 230 LPQDQTEIVLDRELLERALQ 249 >gi|170783848|gb|ACB37397.1| DnaA [Spiroplasma eriocheiris] gi|170783850|gb|ACB37398.1| DnaA [Spiroplasma sp. CRAYFISH] gi|170783854|gb|ACB37400.1| DnaA [Spiroplasma sp. SHRIMP] Length = 150 Score = 52.1 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 44/104 (42%), Gaps = 5/104 (4%) Query: 106 DTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 D +L++DI LL + F+I NS + + +++T+ +P G + SR Sbjct: 40 DKFDCLLIDDIQLLAKRNKTNELFFYIFNSFIEKNKQIVITSDKYPDDLGGFEARIISRF 99 Query: 163 KAATVVKISLPD-DDFLEKVIVKMFADRQIFI-DKKLAAYIVQR 204 + + PD + ++ + K+ + + ++ +I Sbjct: 100 SYGLSIGLDSPDFETAIKILEQKLKQQNNLALFSEESLEFIALN 143 >gi|170691962|ref|ZP_02883126.1| AAA ATPase central domain protein [Burkholderia graminis C4D1M] gi|170143246|gb|EDT11410.1| AAA ATPase central domain protein [Burkholderia graminis C4D1M] Length = 480 Score = 52.1 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 71/191 (37%), Gaps = 24/191 (12%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA + +D + + ++ S + D R+ V I + + T + Sbjct: 91 MILWGPPGVGKTTLARLMADAFHAQFIA--LSAVLSGVKDIREAVETAQIHRANGHQTLV 148 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N + + + A T S+ V L SR A V + D Sbjct: 149 FVDEVHRFNKSQQDAFLPHVESGLFVFVGATTENPSFEVNSA-LLSR---AAVYVLKSLD 204 Query: 175 DDFLEKVIVKMFADR---QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGI 230 +D L +++ + A R + + ++ + ++ + A + I Sbjct: 205 EDELRELLER--AQRELGGLTFTDEARDALIGSADGDGRKLLNNLEIVARAAAQQKTTEI 262 Query: 231 TRSLAAEVLKE 241 +L L E Sbjct: 263 DGALLGSALAE 273 >gi|256269128|gb|EEU04463.1| Afg2p [Saccharomyces cerevisiae JAY291] Length = 780 Score = 52.1 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 64/173 (36%), Gaps = 35/173 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P R ++L GP G+GK+ L + ++ S + + S+ S + + L Sbjct: 278 PPRGILLHGPPGTGKTMLLRVVANTSNAHVLTINGPSIVSKYLGETEAALRDIFNEARKY 337 Query: 113 ------LEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 +++ID + N L +++ + +++ A P S Sbjct: 338 QPSIIFIDEIDSIAPNRANDDSGEVESRVVATLLTLMDGMGVAGKVVVIAATNRPNS--- 394 Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQ 203 P L + V+I +PD D ++ K F+ + +D + YI Sbjct: 395 VDPALRRPGRFDQEVEIGIPDVDARFDILTKQFSRMSSDRHVLDSEAIKYIAS 447 >gi|220903289|ref|YP_002478601.1| Chromosomal replication initiator DnaA domain-containing protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867588|gb|ACL47923.1| Chromosomal replication initiator DnaA domain protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 457 Score = 51.7 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 69/212 (32%), Gaps = 45/212 (21%) Query: 40 RDDLLVHSAIE----QAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN------------- 82 D + + A L S ++ G SG+GKS L Sbjct: 113 FADFICNDKNAFPLATARDLAADTTSTAYNPFLVCGRSGTGKSRLLQAMTCVMSRTADPA 172 Query: 83 --IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ---LFHII------- 130 I S +R + + ++L+DI L +D L II Sbjct: 173 RMICSSAARFCSEHLVWARRPELFWLRYDVLVLDDIQDLAGHDAWQRKLVTIIDTCPGRQ 232 Query: 131 -NS---------------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 N IH+ ++ P + L SRL++ VV++ PD Sbjct: 233 KNLPGIPSGEDIPSAGEQIHRAAPRMIFACSGQPQALKALDERLRSRLESGLVVELMEPD 292 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206 D + + + +R++ + ++ ++ QR Sbjct: 293 LDVRLRYLQVICKERRLPLTREQLLFLAQRCS 324 >gi|300122395|emb|CBK22966.2| unnamed protein product [Blastocystis hominis] Length = 844 Score = 51.7 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 66/164 (40%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R V+L GP GSGK+ LA ++++ + F SN+ K+ + + Sbjct: 239 PPRGVLLYGPPGSGKTLLARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 298 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ I Q + +++ A P V Sbjct: 299 APSIIFIDEIDSIAPKREKINGEVEKRVVSQLLTLMDGIKQRSNVVVIGATNRP---NVI 355 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PD+ +++ + + +D + Sbjct: 356 DPALR-RFGRFDREIDIGVPDEAGRLEIL--RIHSKNMKLDASV 396 >gi|237785603|ref|YP_002906308.1| hypothetical protein ckrop_1012 [Corynebacterium kroppenstedtii DSM 44385] gi|237758515|gb|ACR17765.1| conserved hypothetical protein [Corynebacterium kroppenstedtii DSM 44385] Length = 459 Score = 51.7 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 41/187 (21%), Positives = 75/187 (40%), Gaps = 28/187 (14%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVL------ 112 VIL GP G+GK+ +A++ S + S+ K + S+L + R+ ++ Sbjct: 73 DSSVILFGPPGTGKTTIASLVSSTTGRRFRVLSALSSGVKEIRSVLKEARQALIDGVQTV 132 Query: 113 --LEDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 ++++ L + + + LL+ A T ++ V P L SR + +V+ Sbjct: 133 LFIDEVHRFSKTQQDALL----AAVENRTVLLVAATTENPNFAVVGP-LLSR---SLLVQ 184 Query: 170 ISLPDDDFLEKVI-VKMFADRQIF----IDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 + DD+ + VI + + R + ID IV A V+ +L Sbjct: 185 LEPLDDEAIRTVINRSVSSQRGLAGRIRIDDDAVNSIVAMAGGDARRALTYVEA-SAQSL 243 Query: 225 SRGMGIT 231 G IT Sbjct: 244 DDGETIT 250 >gi|270339823|ref|ZP_06006115.2| conserved hypothetical protein [Prevotella bergensis DSM 17361] gi|270333709|gb|EFA44495.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] Length = 192 Score = 51.7 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 51/117 (43%), Gaps = 24/117 (20%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDTR 108 +IL+GPSG+GK+ +A ++ + +++ ++ + Sbjct: 43 LILMGPSGTGKTFIAAGLVYEAVGQGYKAYMVTMEDVINTIKMKTLMPSAMSAYNRLLKA 102 Query: 109 KPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD--LCS 160 V ++DI L + F+++N++H+ +SL++T P W L D L S Sbjct: 103 DLVAIDDIMLFPVKKEDAAGFFNLVNTLHE-KASLIITTNKAPTEWAKTLDDEVLAS 158 >gi|260580369|ref|ZP_05848198.1| replication-associated recombination protein A [Haemophilus influenzae RdAW] gi|260093046|gb|EEW76980.1| replication-associated recombination protein A [Haemophilus influenzae RdAW] Length = 446 Score = 51.7 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 45/204 (22%), Positives = 81/204 (39%), Gaps = 37/204 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI-----------LIDTRKPVLL 113 +IL GP G+GK+ LA I + + + R S + + I L D + + + Sbjct: 53 MILWGPPGTGKTTLAEIIAQRINAEVERISAVTSGIKEIREAIDRAKQNRLADRKTILFV 112 Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++ + + F HI + + + + A T S+ + L SR A V + Sbjct: 113 DEVHRFNKSQQDAFLPHI-----EDGTVIFIGATTENPSFELNNA-LLSR---ARVYVLK 163 Query: 172 LPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERS----LVFAEKLVDKMD 220 +E+V+ + D R + +++ L + + + L E +VD D Sbjct: 164 SLTTAEIEQVLQQAVEDPKRGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMAD 223 Query: 221 NLALSRGMGITRSLAAEVLKETQQ 244 G I R+L EVL E Q Sbjct: 224 ET--ENGKKIDRTLLKEVLGERQA 245 >gi|300790512|ref|YP_003770803.1| ATPase [Amycolatopsis mediterranei U32] gi|299800026|gb|ADJ50401.1| ATPase [Amycolatopsis mediterranei U32] Length = 462 Score = 51.7 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 57/154 (37%), Gaps = 24/154 (15%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP--------VLLEDI 116 R ++L GP G+GK+ + T + + ++ + V+LED+ Sbjct: 249 RGLLLHGPPGTGKTHTVRYLMGRLPDTTVIILTGTAMKLVGKAAELARRLQPSVVVLEDV 308 Query: 117 DLLDFN-------DTQLFHIINSIH----QYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 DL+ + LF +++++ D + L+T L D R+ Sbjct: 309 DLIAQDRSYGPMVQPLLFTLLDAMDGVGGDADVTFLLTTNRA-SELEKALADRPGRVD-- 365 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199 V+I LPD E ++ R + + L Sbjct: 366 LAVEIPLPDAAGREALL--RLYARGLKLTADLGP 397 >gi|149174465|ref|ZP_01853091.1| chromosomal replication initiation protein [Planctomyces maris DSM 8797] gi|148846575|gb|EDL60912.1| chromosomal replication initiation protein [Planctomyces maris DSM 8797] Length = 342 Score = 51.7 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 39/204 (19%), Positives = 75/204 (36%), Gaps = 23/204 (11%) Query: 65 RVVILVGPSGSGKSCLANI-------------WSDKSRSTRFSNIAKSLDSILIDT---- 107 +V + GPSG GKS L N W+ + S + A + + I Sbjct: 40 PLVYIYGPSGCGKSALINSLLPDYVNLHPEAEWNSMTASEFAAKYAVASKNKRIAAFQEK 99 Query: 108 ---RKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161 K ++LEDI L+ +L +++I + ++++T+ P L +R Sbjct: 100 HRGMKLLVLEDIHSLENRTHTQGELLSTLDTILKQGGAVIVTSIKPPGELAHFQKKLINR 159 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 V I+ +++ QI I +K A I ++ E S +++++ Sbjct: 160 FHGGVCVGIAPLKYQSRLELLKFWADFEQIPIKEKELALIARQKECSPRELSAILNQLHT 219 Query: 222 LALSRGMGITRSLAAEVLKETQQC 245 ++ + I E L Sbjct: 220 VSRIQQKRIEGRFVQEFLDGNLDP 243 >gi|145631003|ref|ZP_01786779.1| predicted ATPase [Haemophilus influenzae R3021] gi|144983470|gb|EDJ90946.1| predicted ATPase [Haemophilus influenzae R3021] Length = 453 Score = 51.7 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 45/204 (22%), Positives = 81/204 (39%), Gaps = 37/204 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI-----------LIDTRKPVLL 113 +IL GP G+GK+ LA I + + + R S + + I L D + + + Sbjct: 53 MILWGPPGTGKTTLAEIIAQRINAEVERISAVTSGIKEIREAIDRAKQNRLADRKTILFV 112 Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++ + + F HI + + + + A T S+ + L SR A V + Sbjct: 113 DEVHRFNKSQQDAFLPHI-----EDGTVIFIGATTENPSFELNNA-LLSR---ARVYVLK 163 Query: 172 LPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERS----LVFAEKLVDKMD 220 +E+V+ + D R + +++ L + + + L E +VD D Sbjct: 164 SLTTAEIEQVLQQAVEDPERGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMAD 223 Query: 221 NLALSRGMGITRSLAAEVLKETQQ 244 G I R+L EVL E Q Sbjct: 224 ET--ENGKKIDRTLLKEVLGERQA 245 >gi|326382066|ref|ZP_08203759.1| recombination factor protein RarA [Gordonia neofelifaecis NRRL B-59395] gi|326199492|gb|EGD56673.1| recombination factor protein RarA [Gordonia neofelifaecis NRRL B-59395] Length = 435 Score = 51.7 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 63/173 (36%), Gaps = 24/173 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ +A + ++++ F ++ + + D RK L T L Sbjct: 53 MILWGPPGCGKTTIARLLAEQTD-LAFEPLSATFSGVA-DLRKVFLAAQKRREVGQGTLL 110 Query: 127 F----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISL 172 F H N + + +L+ T L SR V + Sbjct: 111 FVDEVHRFNRAQQDSFLPYVEDGTIVLVGATTENPSFELNAA---LLSR---CQVFVLKR 164 Query: 173 PDDDFLEKVIVKM--FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 D+ L +I + R + + + ++ + + LV+++ +++ Sbjct: 165 LDEAALTTLIGRAESLLRRALPLSEDGRQALIAMADGDGRYLLNLVEQLQHVS 217 >gi|169825619|ref|YP_001695777.1| DnaA [Lysinibacillus sphaericus C3-41] gi|168990107|gb|ACA37647.1| DnaA [Lysinibacillus sphaericus C3-41] Length = 146 Score = 51.7 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 17/131 (12%), Positives = 44/131 (33%), Gaps = 28/131 (21%) Query: 46 HSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW-----SDKSRSTRFSNIAKSL 100 +++ A P+ + G G GK+ L + + ++ Sbjct: 12 AASLAVAEA-----PAKAYNPFFIYGGVGLGKTHLMHAIGHYVLEHNPNAKVVYLSSEKF 66 Query: 101 DSILIDTRK---------------PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLM 142 + I++ + +L++DI L + + FH N++H+ +++ Sbjct: 67 TNEFINSIRDNKALDFRNKYRNVDVLLIDDIQFLAGKESTQEEFFHTFNTLHEESKQIVI 126 Query: 143 TARTFPVSWGV 153 ++ P Sbjct: 127 SSDRPPKEIPT 137 >gi|260582200|ref|ZP_05849994.1| formyltetrahydrofolate deformylase [Haemophilus influenzae NT127] gi|260094832|gb|EEW78726.1| formyltetrahydrofolate deformylase [Haemophilus influenzae NT127] Length = 446 Score = 51.7 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 43/202 (21%), Positives = 82/202 (40%), Gaps = 33/202 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI-----------LIDTRKPVLL 113 +IL GP G+GK+ LA I + + + R S + + I L D + + + Sbjct: 53 MILWGPPGTGKTTLAEIIAQRINAEVERISAVTSGIKEIREAIDRAKQNRLADRKTILFV 112 Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++ + + F HI + + + + A T S+ + L SR A V + Sbjct: 113 DEVHRFNKSQQDAFLPHI-----EDGTVIFIGATTENPSFELNNA-LLSR---ARVYVLK 163 Query: 172 LPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA- 223 +E+V+ + D R + +++ L + + + A ++ M ++A Sbjct: 164 SLTTAEIEQVLQQAIEDPERGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMAE 223 Query: 224 -LSRGMGITRSLAAEVLKETQQ 244 G I R+L EVL E Q Sbjct: 224 ETENGKKIDRTLLKEVLGERQA 245 >gi|313678135|ref|YP_004055875.1| chromosomal replication initiator protein dnaA [Mycoplasma bovis PG45] gi|312950805|gb|ADR25400.1| chromosomal replication initiator protein dnaA [Mycoplasma bovis PG45] Length = 466 Score = 51.7 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 39/243 (16%), Positives = 88/243 (36%), Gaps = 41/243 (16%) Query: 40 RDDLLVHSAIEQAVRL----IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS------- 88 D+ + + ++A+R+ +D + + G SG GK+ L N ++ Sbjct: 126 FDNYVEGNFNKEAIRIAKLIVDGEED--YNPIFIYGKSGIGKTHLLNAICNEFLKKDVTV 183 Query: 89 ---RSTRFSNIAKSLDSILIDTRKPVLL----EDIDLLDFND-------------TQLFH 128 + F+ D RK + ++ D++ F+D +F+ Sbjct: 184 KYINANSFTRDISYFLQEN-DQRKLKQIRNHFDNADIVMFDDFQSYGIGNKKATIELIFN 242 Query: 129 IINSIHQYDSSLLMTARTFPVSW-GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 I++S + ++ + S L SRL + I P L K++ M Sbjct: 243 ILDSRINQKRTTIICSDRPIYSLQNSFDARLISRLSMGLQLSIDEPQKADLLKILDYMIN 302 Query: 188 DRQIFI---DKKLAAYIVQRMERSLVFAEKLVDKM---DNLALSRGMGITRSLAAEVLKE 241 ++ + +IV+ S+ ++++ ++ + T ++ +LK+ Sbjct: 303 INKMTPELWEDDAKIFIVKNHANSIRSLIGAINRLRFYNSEIVKTNSRYTLAIVNSILKD 362 Query: 242 TQQ 244 QQ Sbjct: 363 IQQ 365 >gi|126458632|ref|YP_001054910.1| replication factor C large subunit [Pyrobaculum calidifontis JCM 11548] gi|158513487|sp|A3MS27|RFCL_PYRCJ RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|126248353|gb|ABO07444.1| transcriptional regulator, Fis family [Pyrobaculum calidifontis JCM 11548] Length = 421 Score = 51.7 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 69/189 (36%), Gaps = 32/189 (16%) Query: 64 SRVVILVGPSGSGKSCLANIWSDK----------------SRSTRFSNIAKSLDSILIDT 107 +R V+L GP G GK+ L + + + R + S+ Sbjct: 56 ARAVLLWGPPGIGKTTLVHALAKEIGYELVELNASDVRTGERIRQVVGRGLREASLFGYA 115 Query: 108 RKPVLLEDIDLLDFNDT--QLFHIINSIHQYDSSLLMTARTF--PVSWGVCLPDLCSRLK 163 K VL +++D L + L I+N I +++TA P L D+ Sbjct: 116 GKIVLFDEVDGLHVKEDLGGLEAILNLIETAKVPIVLTANNPFDPKLRP--LRDI----- 168 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + VV + +D + +V+ ++ A +++ + + S ++ + L Sbjct: 169 -SLVVGLKRLSEDEVVEVLKRICASEGAKCEEEALRSLAKS---SYGDLRAAINDL-QLY 223 Query: 224 LSRGMGITR 232 L+ +T Sbjct: 224 LAGRKVLTV 232 >gi|224079924|ref|XP_002305974.1| predicted protein [Populus trichocarpa] gi|222848938|gb|EEE86485.1| predicted protein [Populus trichocarpa] Length = 556 Score = 51.7 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 40/214 (18%), Positives = 77/214 (35%), Gaps = 44/214 (20%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110 R V+LVGP G+GK+ LA + ++ FS A + + Sbjct: 302 RGVLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFVELFVGRGAARIRDLFNAARKSSP 361 Query: 111 --VLLEDIDLLDF-------ND-----TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL- 155 + ++++D + ++ QL ++ +++ A P + L Sbjct: 362 SIIFIDELDAVGGKRGRSFNDERDQTLNQLLTEMDGFESEMKVVVIAATNRPEALDPALC 421 Query: 156 -PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK--KLAAYIVQRMERSLVFA 212 P SR V + PD++ K++ R + ID+ L +V + V A Sbjct: 422 RPGRFSR-----KVVVGEPDEEGRRKILAVHL--RGVPIDEDADLICNLVASLTPGFVGA 474 Query: 213 EKLVDKMDNLALSRGMG----ITRSLAAEVLKET 242 L + ++ AL +TR E ++ Sbjct: 475 -DLANIINEAALLAARRGGDIVTREDVMEAIERA 507 >gi|126664804|ref|ZP_01735788.1| putative transposase [Marinobacter sp. ELB17] gi|126664928|ref|ZP_01735911.1| putative transposase [Marinobacter sp. ELB17] gi|126665885|ref|ZP_01736866.1| putative transposase [Marinobacter sp. ELB17] gi|126667106|ref|ZP_01738081.1| putative transposase [Marinobacter sp. ELB17] gi|126667676|ref|ZP_01738644.1| putative transposase [Marinobacter sp. ELB17] gi|126668381|ref|ZP_01739339.1| putative transposase [Marinobacter sp. ELB17] gi|126668496|ref|ZP_01739451.1| putative transposase [Marinobacter sp. ELB17] gi|126668544|ref|ZP_01739499.1| putative transposase [Marinobacter sp. ELB17] gi|126668669|ref|ZP_01739620.1| putative transposase [Marinobacter sp. ELB17] gi|126669137|ref|ZP_01740065.1| putative transposase [Marinobacter sp. ELB17] gi|126626407|gb|EAZ97076.1| putative transposase [Marinobacter sp. ELB17] gi|126626847|gb|EAZ97493.1| putative transposase [Marinobacter sp. ELB17] gi|126627007|gb|EAZ97649.1| putative transposase [Marinobacter sp. ELB17] gi|126627055|gb|EAZ97697.1| putative transposase [Marinobacter sp. ELB17] gi|126627197|gb|EAZ97836.1| putative transposase [Marinobacter sp. ELB17] gi|126627779|gb|EAZ98408.1| putative transposase [Marinobacter sp. ELB17] gi|126628512|gb|EAZ99134.1| putative transposase [Marinobacter sp. ELB17] gi|126629819|gb|EBA00436.1| putative transposase [Marinobacter sp. ELB17] gi|126630298|gb|EBA00913.1| putative transposase [Marinobacter sp. ELB17] gi|126631130|gb|EBA01744.1| putative transposase [Marinobacter sp. ELB17] Length = 251 Score = 51.3 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 50/134 (37%), Gaps = 25/134 (18%) Query: 47 SAIEQAVRLIDSWPSWPSRV--VILVGPSGSGKSCLANIWSDK-----SRSTRFSNIAKS 99 A+ + W V+L+GPSG+GK+ +AN + R F IA Sbjct: 81 PCN-TALARLQQDSDWAHHADNVLLIGPSGTGKTHIANALGHQLTEQGVRCKLFPAIALV 139 Query: 100 -------------LDSILIDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMT 143 +D + V+++DI + D + LF I ++ SL++T Sbjct: 140 QHLQQAKRDLDLMTAMTRLDKYRVVIIDDIGYVKKTDAETQVLFEFIAHRYESG-SLIVT 198 Query: 144 ARTFPVSWGVCLPD 157 A W PD Sbjct: 199 ANQPFSEWDQIFPD 212 >gi|168701195|ref|ZP_02733472.1| recombination factor protein RarA [Gemmata obscuriglobus UQM 2246] Length = 449 Score = 51.3 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 67/177 (37%), Gaps = 34/177 (19%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLL 119 +I GP G GK+ LA++ + ++S + K + +L + R LE++ Sbjct: 53 NSLIFYGPPGCGKTALAHVIAKHTKSRFKPLNAVAAGTKDVRELLAEARGH--LEEL--- 107 Query: 120 DFNDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 T LF H N + +L+ A T + + P L SR + + Sbjct: 108 -GERTILFLDEIHRFNRAQQDVLLPDVEDGVIILIGATTQNPFFAINTP-LLSR---SQI 162 Query: 168 VKISLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVD 217 + D + ++++ +D R + I A++V+ + A ++ Sbjct: 163 FRFEPLSRDDVRTLLLRAVSDTERGLGKLNVTITDDALAFLVEVCDGDARRALTALE 219 >gi|66934627|gb|AAY58902.1| putative CDC48/ATPase [Hyaloperonospora parasitica] Length = 804 Score = 51.3 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 69/171 (40%), Gaps = 35/171 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R V+L GP GSGK+ +A ++++ + F SN+ K+ + + Sbjct: 232 PPRGVLLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 291 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + Q S +++ A P S Sbjct: 292 APAIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKQRASVVVIGATNRPNSMD-- 349 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 P L R + + I +PD++ ++ R + +D + ++ R Sbjct: 350 -PALR-RFGRFDREIDIGVPDENGRLEIF--RIHTRNMKLDDDVDPELIAR 396 Score = 38.6 bits (89), Expect = 0.74, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 505 PSKGVLFYGPPGCGKTLLAKAVANECQANFISIKGPELLTMWFGESEANVREVFDKARG 563 >gi|296108730|ref|YP_003615679.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus infernus ME] gi|295433544|gb|ADG12715.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus infernus ME] Length = 903 Score = 51.3 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 36/231 (15%), Positives = 84/231 (36%), Gaps = 57/231 (24%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + V+LVGP G+GK+ LA ++++ + + N+ K + + Sbjct: 212 PPKGVLLVGPPGTGKTLLAKAVANEAGANFYVINGPEIMSKYVGETEENLRKIFEEAEEN 271 Query: 107 TRKPVLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + ++ QL +++ + +++ A P + Sbjct: 272 APSIIFIDEIDAIAPKRDEATGEVERRLVAQLLTLMDGLKGRGQVVVIGATNRPDALD-- 329 Query: 155 LPDLC--SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYI--VQRM---- 205 P L R V I +PD + ++++ R + + + + Y+ V Sbjct: 330 -PALRRPGRFDREIV--IGVPDREGRKEILQ--IHTRNMPLAEDVDLDYLADVTHGFVGA 384 Query: 206 -------ERSLVFAEKLVDKMDNLALSRGM------GITRSLAAEVLKETQ 243 E ++ +++ +D A +T E LK+ + Sbjct: 385 DLAALCKEAAMRALRRVLPDIDLEAEEIPKEVLDNLKVTMDDFKEALKDVE 435 Score = 40.5 bits (94), Expect = 0.24, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 20/32 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + V+L GP G+GK+ LA ++++ + S Sbjct: 485 PPKGVLLFGPPGTGKTLLAKAVANEAGANFIS 516 >gi|147677387|ref|YP_001211602.1| recombination factor protein RarA [Pelotomaculum thermopropionicum SI] gi|146273484|dbj|BAF59233.1| ATPase [Pelotomaculum thermopropionicum SI] Length = 440 Score = 51.3 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 30/201 (14%), Positives = 75/201 (37%), Gaps = 35/201 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 I GP G+GK+ LA+I + +R+ + ++ ++R+ + L + + F Sbjct: 55 AIFFGPPGTGKTTLASIIAGMTRAHFETINAVMAGVGDIKRVVEESRERLALYNQKTILF 114 Query: 122 NDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 D H N + +++ + T + V P L SR + + + Sbjct: 115 IDEI--HRFNRTQQDALLPFVENGQIIMIGSTTENPMFAVSRP-LLSR---SQLYRFEPL 168 Query: 174 DDDFLEKVIVKMFAD--RQIF-----IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 D+ + +++ + D R + + + ++ A ++ ++ L+ Sbjct: 169 SDEAVRRILTRALLDEERGLAGYRAEVAGEALDHLAAVAN---GDARAALNALELAVLAT 225 Query: 227 G------MGITRSLAAEVLKE 241 I+ + A E +++ Sbjct: 226 PPGEDGIRRISLAAAEEAVQK 246 >gi|269114778|ref|YP_003302541.1| Chromosomal replication initiator protein [Mycoplasma hominis] gi|268322403|emb|CAX37138.1| Chromosomal replication initiator protein [Mycoplasma hominis ATCC 23114] Length = 463 Score = 51.3 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 28/212 (13%), Positives = 71/212 (33%), Gaps = 30/212 (14%) Query: 38 ISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 ++ DD + A++ I + + + SG GK+ L + ++ S Sbjct: 125 LTFDDYAIGKFNNMALKAAKAICNSEKILFSPLFIHASSGLGKTHLLHAIGNELLKHGRS 184 Query: 95 NIAKSLDSIL---------------------IDTRKPVLLEDIDLLDFNDTQLFHIINSI 133 + + DS+ + + ++ +D+ D+ L + N I Sbjct: 185 ALYINPDSLTRRLVEQLKSKNQEQINKIIDELMSYDCLMFDDVQQYGNRDSTLNVLFNII 244 Query: 134 HQ---YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 D ++ P G +R V+I P+ + + ++ + Sbjct: 245 DNMIMNDKQIIFCGDKKPDDLGGFEQRFITRFNGGLTVEILKPELNDVINILKFKLQENG 304 Query: 191 IFI---DKKLAAYIVQRMERSLVFAEKLVDKM 219 I +++ +I + S+ E ++++ Sbjct: 305 INPELWEEESLKFIARNFSSSIRNIEGAINRI 336 >gi|62177288|gb|AAX70927.1| chromosomal replication initiator protein DnaA [Mycoplasma hominis ATCC 23114] Length = 463 Score = 51.3 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 28/212 (13%), Positives = 71/212 (33%), Gaps = 30/212 (14%) Query: 38 ISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 ++ DD + A++ I + + + SG GK+ L + ++ S Sbjct: 125 LTFDDYAIGKFNNMALKAAKAICNSEKILFSPLFIHASSGLGKTHLLHAIGNELLKHGRS 184 Query: 95 NIAKSLDSIL---------------------IDTRKPVLLEDIDLLDFNDTQLFHIINSI 133 + + DS+ + + ++ +D+ D+ L + N I Sbjct: 185 ALYINPDSLTRRLVEQLKSKNQEQINKIIDELMSYDCLMFDDVQQYGNRDSTLNVLFNII 244 Query: 134 HQ---YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 D ++ P G +R V+I P+ + + ++ + Sbjct: 245 DNMIMNDKQIIFCGDKKPDDLGGFEQRFITRFNGGLTVEILKPELNDVINILKFKLQENG 304 Query: 191 IFI---DKKLAAYIVQRMERSLVFAEKLVDKM 219 I +++ +I + S+ E ++++ Sbjct: 305 INPELWEEESLKFIARNFSSSIRNIEGAINRI 336 >gi|309973263|gb|ADO96464.1| Recombination factor RarA [Haemophilus influenzae R2846] Length = 446 Score = 51.3 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 45/204 (22%), Positives = 81/204 (39%), Gaps = 37/204 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI-----------LIDTRKPVLL 113 +IL GP G+GK+ LA I + + + R S + + I L D + + + Sbjct: 53 MILWGPPGTGKTTLAEIIAQRINAEVERISAVTSGIKEIREAIERAKQNRLADRKTILFV 112 Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++ + + F HI + + + + A T S+ + L SR A V + Sbjct: 113 DEVHRFNKSQQDAFLPHI-----EDGTVIFIGATTENPSFELNNA-LLSR---ARVYVLK 163 Query: 172 LPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERS----LVFAEKLVDKMD 220 +E+V+ + D R + +++ L + + + L E +VD D Sbjct: 164 SLTTAEIEQVLQQAVEDPERGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMAD 223 Query: 221 NLALSRGMGITRSLAAEVLKETQQ 244 G I R+L EVL E Q Sbjct: 224 ET--ENGKKIDRTLLKEVLGERQA 245 >gi|159041491|ref|YP_001540743.1| replication factor C large subunit [Caldivirga maquilingensis IC-167] gi|157920326|gb|ABW01753.1| AAA ATPase central domain protein [Caldivirga maquilingensis IC-167] Length = 418 Score = 51.3 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 31/198 (15%), Positives = 73/198 (36%), Gaps = 30/198 (15%) Query: 54 RLIDSWPSWPS-RVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NI 96 I W S R ++L GP G+GK+ + + + + Sbjct: 32 DWISKWLSGKEKRAILLSGPPGTGKTTMVHALAYDYGLELYEMNASDVRTASRIRETIGK 91 Query: 97 AKSLDSILIDTRKPVLLEDIDLLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 A + S+ K VL +++D ++ + ++ I++ + + + MTA W Sbjct: 92 ALTQGSLFGFRGKLVLFDEVDGINVRADQGGIYEIVDIVKEAKVPIAMTANDP---WDPK 148 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 L L VV++ + + +++ ++ ++ ++ I E S+ Sbjct: 149 LRPLR---DICVVVQVKPLKNRDIIEMLRRICNAEKVKCEEDALRLIA---ESSMGDMRS 202 Query: 215 LVDKMDNLALSRGMGITR 232 ++ D ++ +TR Sbjct: 203 AIN--DLQTVAETGPVTR 218 >gi|296123644|ref|YP_003631422.1| replication initiation factor DnaA protein [Planctomyces limnophilus DSM 3776] gi|296015984|gb|ADG69223.1| Chromosomal replication initiator DnaA domain protein [Planctomyces limnophilus DSM 3776] Length = 353 Score = 51.3 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 35/233 (15%), Positives = 79/233 (33%), Gaps = 32/233 (13%) Query: 39 SRDDLLVHSAI----EQAVRLIDSWPS----WPSRVVILVGPSGSGKSCLANIWSDK--- 87 S++ LV A+R+++ S P R+ ++ GP G GK+ L + + Sbjct: 15 SQEPFLVLPENHFAYTAAMRIVEPMGSMAVQGP-RITLVYGPKGGGKTHLVRHVARETLK 73 Query: 88 --SRSTRFSNIAKSLDSILIDTR---------------KPVLLEDIDLLDFN---DTQLF 127 +R A L++ + ++L+ D L QL Sbjct: 74 RLARGKLLLANAHEFCQWLLEAHDQKAVVEAHEKLRSLEVLILDGFDELQDRADLQQQLL 133 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 +I+ + +L+ + P L +R + P D +++ + Sbjct: 134 CVIDLMADAGGHILIVSEKAPGELRGLSTRLVNRCHGGLCALLKWPGTDSRKQLALHFAH 193 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + + + + A + + + S + +++ +A SL L+ Sbjct: 194 QKHLPMSEAAALELAENLAGSPAQLIIAIQQIELMARREHSTADLSLIKRYLQ 246 >gi|78222159|ref|YP_383906.1| recombination factor protein RarA [Geobacter metallireducens GS-15] gi|78193414|gb|ABB31181.1| Recombination protein MgsA [Geobacter metallireducens GS-15] Length = 441 Score = 51.3 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 42/194 (21%), Positives = 77/194 (39%), Gaps = 32/194 (16%) Query: 67 VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I GP GSGK+ LA I ++ KS FS I + I ++ E+ ++T Sbjct: 56 LIFWGPPGSGKTTLARIIANATKSHFIFFSAILSGVKEIREIVKEA---ENERKYRGSNT 112 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + ++ A T S+ V P L SR V+ ++ Sbjct: 113 ILFVDEIHRFNKSQQDAFLPYVEKGVFTIIGATTENPSFEVIAP-LLSR---CKVLVLNS 168 Query: 173 PDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA-L 224 D+ + ++ + D R + + + A++ E++ A ++ ++ A L Sbjct: 169 LTDEEVTTILRRALVDPERGLGNRSLAVSDEALAFMA---EQAQGDARIALNTLETAARL 225 Query: 225 SRGMGITRSLAAEV 238 ++ I A E Sbjct: 226 AKNGEIDLDSAREA 239 >gi|329123991|ref|ZP_08252538.1| replication-associated recombination protein A [Haemophilus aegyptius ATCC 11116] gi|327467416|gb|EGF12914.1| replication-associated recombination protein A [Haemophilus aegyptius ATCC 11116] Length = 446 Score = 51.3 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 45/204 (22%), Positives = 81/204 (39%), Gaps = 37/204 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI-----------LIDTRKPVLL 113 +IL GP G+GK+ LA I + + + R S + + I L D + + + Sbjct: 53 MILWGPPGTGKTTLAEIIAQRINAEVERISAVTSGIKEIREAIERAKQNRLADRKTILFV 112 Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++ + + F HI + + + + A T S+ + L SR A V + Sbjct: 113 DEVHRFNKSQQDAFLPHI-----EDGTVIFIGATTENPSFELNNA-LLSR---ARVYVLK 163 Query: 172 LPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERS----LVFAEKLVDKMD 220 +E+V+ + D R + +++ L + + + L E +VD D Sbjct: 164 SLTTAEIEQVLQQAVEDPERGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMAD 223 Query: 221 NLALSRGMGITRSLAAEVLKETQQ 244 G I R+L EVL E Q Sbjct: 224 ET--ENGKKIDRTLLKEVLGERQA 245 >gi|297565423|ref|YP_003684395.1| AAA ATPase central domain-containing protein [Meiothermus silvanus DSM 9946] gi|296849872|gb|ADH62887.1| AAA ATPase central domain protein [Meiothermus silvanus DSM 9946] Length = 425 Score = 51.3 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 65/185 (35%), Gaps = 22/185 (11%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP GSGK+ LA + ++ + A + I E L+ F D Sbjct: 47 LILWGPPGSGKTTLARLLAEGVGQEMLALSAVNAGVREIKEAVARAREVGGLVLFLDEI- 105 Query: 127 FHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178 H N + L+ A T S+ V P L SR A V + + + + Sbjct: 106 -HRFNKSQQDALLPHVESGLLTLIGATTENPSFEVN-PALRSR---ARVYVLRPLEPEEI 160 Query: 179 EKVIVKMFADR----QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234 +++ + + + K + Q S+ + + ++ A G IT Sbjct: 161 RQLLERALQHPEGLLGVEAEPKALELLAQA---SMGDVRRALSALELAATLAG-KITLES 216 Query: 235 AAEVL 239 E L Sbjct: 217 VKEGL 221 >gi|291484339|dbj|BAI85414.1| IS643-like transposase [Bacillus subtilis subsp. natto BEST195] gi|291485047|dbj|BAI86122.1| IS643-like transposase [Bacillus subtilis subsp. natto BEST195] gi|291486646|dbj|BAI87721.1| IS643-like transposase [Bacillus subtilis subsp. natto BEST195] Length = 252 Score = 51.3 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 51/115 (44%), Gaps = 24/115 (20%) Query: 61 SWPSRV--VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL-------------- 104 +W + +IL+GP G GK+ LA +S F+ ++ ++ Sbjct: 96 NWLEQQYNLILLGPPGVGKTFLAIGLGIESIHRGFNVYFVTMGELIHLLKTEEFLNKSKV 155 Query: 105 ----IDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWG 152 + V+++D+ + + + FH+IN +++ SS+++T+ P WG Sbjct: 156 QLKRLRGADLVIIDDLMYMAMDQREANLFFHLINHLYER-SSIILTSNKSPEQWG 209 >gi|229137172|ref|ZP_04265791.1| Prophage LambdaBa02, DNA replication protein DnaC [Bacillus cereus BDRD-ST26] gi|228646344|gb|EEL02559.1| Prophage LambdaBa02, DNA replication protein DnaC [Bacillus cereus BDRD-ST26] Length = 196 Score = 51.3 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 51/125 (40%), Gaps = 24/125 (19%) Query: 52 AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------- 104 AV+ + ++ W ++L G G+GK+ LA ++ + + +S+ +L Sbjct: 32 AVKYVKNFKEWNGESLLLWGEPGNGKTHLAAAIVNELSKKGYIVVFQSVPELLQRIRSTF 91 Query: 105 --------------IDTRKPVLLEDIDL---LDFNDTQLFHIINSIHQYDSSLLMTARTF 147 + ++L+DI ++ + +LF+II+ ++ + L T+ Sbjct: 92 NSENKENETQIMRALLECDLLILDDIGAEKTTEWVEEKLFNIIDGRYRKELPTLYTSNLE 151 Query: 148 PVSWG 152 P Sbjct: 152 PKELK 156 >gi|126665703|ref|ZP_01736684.1| putative transposase [Marinobacter sp. ELB17] gi|126629637|gb|EBA00254.1| putative transposase [Marinobacter sp. ELB17] Length = 251 Score = 51.3 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 50/134 (37%), Gaps = 25/134 (18%) Query: 47 SAIEQAVRLIDSWPSWPSRV--VILVGPSGSGKSCLANIWSDK-----SRSTRFSNIAKS 99 A+ + W V+L+GPSG+GK+ +AN + R F IA Sbjct: 81 PCN-TALARLQQDSDWAHHADNVLLIGPSGTGKTHIANALGHQLTEQGVRCKLFPAIALV 139 Query: 100 -------------LDSILIDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMT 143 +D + ++++DI + D + LF I ++ SL++T Sbjct: 140 QHLQQAKRDLDLMTAMTRLDKYRVIIIDDIGYVKKTDAETQVLFEFIAHRYESG-SLIVT 198 Query: 144 ARTFPVSWGVCLPD 157 A W PD Sbjct: 199 ANQPFSEWDQIFPD 212 >gi|303326761|ref|ZP_07357203.1| ATPase, AAA family [Desulfovibrio sp. 3_1_syn3] gi|302862749|gb|EFL85681.1| ATPase, AAA family [Desulfovibrio sp. 3_1_syn3] Length = 409 Score = 51.3 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 65/162 (40%), Gaps = 14/162 (8%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI--LIDTRKPVLLEDIDLLD 120 ++ GP G GKS LA + + + R S L + + + ++L+++ Sbjct: 39 PSLLFFGPPGCGKSTLALLLAKSTGKKYLRLSAPEAGLQHLRRALAGVEILVLDELHRFS 98 Query: 121 FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 F + + + +LL T P + V L SRL V+++ L + Sbjct: 99 KAQQDFF--LPLVESGELTLLATTTENPS-FSVTRQ-LLSRL---HVLRLRPLGRAELMQ 151 Query: 181 VIVKMFADRQIFIDKKLAAYI--VQRME-RSLVFAEKLVDKM 219 + + D Q+ ++ ++ + V + RSL+ + V + Sbjct: 152 LARRGAQDLQVELNDEVLDLLAGVAHGDARSLLNLVEYVAAL 193 >gi|329766196|ref|ZP_08257754.1| AAA family ATPase, CDC48 subfamily protein [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137255|gb|EGG41533.1| AAA family ATPase, CDC48 subfamily protein [Candidatus Nitrosoarchaeum limnia SFB1] Length = 715 Score = 51.3 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 64/159 (40%), Gaps = 33/159 (20%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK----P 110 V+L GP G+GK+ LA + ++ + S + L I + Sbjct: 216 VLLYGPPGTGKTLLAKAVAGETSAHFISLSGPEIMGKYYGESEEKLREIFKQAEENSPSI 275 Query: 111 VLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158 V +++ID + ++ +QL +++ + +++ A P S P L Sbjct: 276 VFIDEIDSIAPKRDEVSGEVEKRIVSQLLTLMDGMKSRGKVVVIAATNRPDSID---PAL 332 Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 + ++I +PDD+ +++ R + ID+K+ Sbjct: 333 RRPGRFDREIEIGIPDDEGRHEIL--SIHTRGMPIDEKV 369 >gi|310640104|ref|YP_003944862.1| aaa atpase central domain protein [Paenibacillus polymyxa SC2] gi|309245054|gb|ADO54621.1| AAA ATPase central domain protein [Paenibacillus polymyxa SC2] Length = 442 Score = 51.3 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 35/194 (18%), Positives = 71/194 (36%), Gaps = 32/194 (16%) Query: 54 RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL 113 +I++ +I GP G GK+ LA I +++++S A + I + V+ Sbjct: 44 EMIENDQ---VSSMIFWGPPGVGKTTLAKIIANQTQSKFIDFSAVTSG---IKDIRSVMK 97 Query: 114 EDIDLLDFNDTQLF-----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCS 160 E + L H N + S +L+ A T S+ V L S Sbjct: 98 EAEGNRQLGEKTLLFIDEIHRFNKAQQDAFLPYVEKGSIILIGATTENPSFEVNSA-LLS 156 Query: 161 RLKAATVVKISLPDDDFLEKVIVKM------FADRQIFIDKKLAAYIVQRMERSLVFAEK 214 R + V + + + +++ K F ++ I I+ + + I + + A Sbjct: 157 R---SKVFVLHPLNHADILELLQKALANPKGFNNQSIEIEDGVLSAIAEYCD---GDARV 210 Query: 215 LVDKMDNLALSRGM 228 ++ ++ L Sbjct: 211 ALNTLEMAVLHGKK 224 >gi|330833937|ref|YP_004408665.1| AAA family ATPase, CDC48 subfamily protein [Metallosphaera cuprina Ar-4] gi|329566076|gb|AEB94181.1| AAA family ATPase, CDC48 subfamily protein [Metallosphaera cuprina Ar-4] Length = 753 Score = 51.3 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 35/224 (15%), Positives = 76/224 (33%), Gaps = 55/224 (24%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106 P + V+L GP G GK+ LA +++ + S + + D + Sbjct: 210 PPKGVLLYGPPGVGKTLLARALANEIGAYFVSINGPEIMSKFYGESEQRLREIFDDADKN 269 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVS--WG 152 + +++ID + + QL +++ I +++ A P + Sbjct: 270 APSIIFIDEIDAIAPSREEVTGEVEKRVVSQLLTLMDGIKGRGRIVVIGATNRPNAVDQA 329 Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM------- 205 + P R ++I PD ++++ R + + + ++ M Sbjct: 330 LRRP---GRFD--REIEIRPPDTKARKEILQVH--TRNMPLSDDVNLNLIAEMTYGYTGA 382 Query: 206 -------ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 E ++ + ++ D L L+ EVLKE Sbjct: 383 DIAALAKEAAMYALRRFINSGDRKKLLEQDR----LSPEVLKEL 422 Score = 38.2 bits (88), Expect = 1.1, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 7/53 (13%) Query: 49 IEQAVRLIDSWPS-------WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 + +AV +P P + V+L GP G+GK+ LA + +S + + Sbjct: 466 LREAVEWPMRFPDVFNKTGIRPPKGVLLFGPPGTGKTMLAKAVATESGANFIA 518 >gi|170579214|ref|XP_001894730.1| ATPase, AAA family protein [Brugia malayi] gi|158598563|gb|EDP36432.1| ATPase, AAA family protein [Brugia malayi] Length = 700 Score = 51.3 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 38/201 (18%), Positives = 72/201 (35%), Gaps = 36/201 (17%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSR------------STRFSNIAKSLDSILIDTR-- 108 P ++L GP G K+ +A + +SR S +++ + R Sbjct: 468 PPSGILLYGPPGCSKTLIARAIASQSRMNFLAVKGPELFSKWVGESERAVRELFRRARQV 527 Query: 109 KPVLL--EDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 P ++ ++ID + N TQL ++ + + +++ A P Sbjct: 528 APAIIFFDEIDAVGANRGDRNESHVGERVLTQLLTELDGLEEKGDVMVLAATNRPDRLDS 587 Query: 154 CLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER-SLVF 211 L L R + + LPD++ +++ Q+ ID + I +R E S Sbjct: 588 AL--LRPGRFN--LTIHVPLPDEETRLEILRIRLNQMQVTIDLDVED-ISKRTEGFSGAE 642 Query: 212 AEKLVDKMDNLALSRGMGITR 232 +L D+ AL R Sbjct: 643 VVELCDQAVREALLENRDANR 663 >gi|145641740|ref|ZP_01797316.1| formyltetrahydrofolate deformylase [Haemophilus influenzae R3021] gi|145273554|gb|EDK13424.1| formyltetrahydrofolate deformylase [Haemophilus influenzae 22.4-21] Length = 446 Score = 51.3 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 45/204 (22%), Positives = 81/204 (39%), Gaps = 37/204 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI-----------LIDTRKPVLL 113 +IL GP G+GK+ LA I + + + R S + + I L D + + + Sbjct: 53 MILWGPPGTGKTTLAEIIAQRINAEVERISAVTSGIKEIREAIERAKQNRLADRKTILFV 112 Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++ + + F HI + + + + A T S+ + L SR A V + Sbjct: 113 DEVHRFNKSQQDAFLPHI-----EDGTVIFIGATTENPSFELNNA-LLSR---ARVYVLK 163 Query: 172 LPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERS----LVFAEKLVDKMD 220 +E+V+ + D R + +++ L + + + L E +VD D Sbjct: 164 SLTTAEIEQVLQQAVEDPERGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMAD 223 Query: 221 NLALSRGMGITRSLAAEVLKETQQ 244 G I R+L EVL E Q Sbjct: 224 ET--ENGKKIDRTLLKEVLGERQA 245 >gi|121535958|ref|ZP_01667752.1| AAA ATPase, central domain protein [Thermosinus carboxydivorans Nor1] gi|121305450|gb|EAX46398.1| AAA ATPase, central domain protein [Thermosinus carboxydivorans Nor1] Length = 446 Score = 51.3 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 35/199 (17%), Positives = 77/199 (38%), Gaps = 29/199 (14%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 ++L GP G+GK+ LA + ++ + A + + + E + L T Sbjct: 53 PSLLLFGPPGTGKTTLAYLIANAAGCHFEKLNAVAAGVADVRKQVEAAQERL-KLYGQRT 111 Query: 125 QLF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + + +L+ A T + V P L SR++ + K+ Sbjct: 112 ILFIDEIHRFNKGQQDALLPFVEDGTIILIGATTENPYFEVNSP-LLSRMR---ITKLQP 167 Query: 173 PDDDFLEKVIVKMFA------DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 ++ + +++V+ DR++ D+ + R+ ++ ++ ++ A Sbjct: 168 LSEEEIVQILVRALTDERGLGDRRLAWDEGALGHYCPRLPAAMPRI--ALNILEQAAWQL 225 Query: 227 ----GMGITRSLAAEVLKE 241 IT ++ V+ E Sbjct: 226 EETGEGRITAAVLETVMGE 244 >gi|298246048|ref|ZP_06969854.1| AAA ATPase central domain protein [Ktedonobacter racemifer DSM 44963] gi|297553529|gb|EFH87394.1| AAA ATPase central domain protein [Ktedonobacter racemifer DSM 44963] Length = 481 Score = 51.3 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 40/199 (20%), Positives = 72/199 (36%), Gaps = 32/199 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125 ++ GP GSGK+ L+ + + + S S + + V+ E L F+ + Sbjct: 80 MLFWGPPGSGKTTLSEAIARHADARFV---TLSATSAGVADLRRVVDEAAKLRQFSQRRT 136 Query: 126 -LF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + + L+ A T S+ V L SR V + Sbjct: 137 ILFIDEIHRFNKAQQDAVLPHVERGTVTLIGATTENPSFEVNSA-LLSR---CRVFVLKA 192 Query: 173 PDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 D+ + +++ + D QI D++ I A +++ +S Sbjct: 193 LDEAQIVRILQRALEDSERGLGQYQITSDEEALQAIAIFASGDARTALNVLELAAQGVMS 252 Query: 226 RG----MGITRSLAAEVLK 240 G IT +L EV++ Sbjct: 253 GGGTDERHITLALVEEVMQ 271 >gi|284048963|ref|YP_003399302.1| AAA ATPase central domain protein [Acidaminococcus fermentans DSM 20731] gi|283953184|gb|ADB47987.1| AAA ATPase central domain protein [Acidaminococcus fermentans DSM 20731] Length = 439 Score = 50.9 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 36/196 (18%), Positives = 74/196 (37%), Gaps = 36/196 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I GP G GK+ LA I + +R+ FS + + I ++ D + T Sbjct: 52 MIFWGPPGVGKTTLAQIIAHTTRANFINFSAVTSGIKEIRTVMQRA----DENRRFGART 107 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +F H N + + +L+ A T S+ V L SR V + Sbjct: 108 IVFVDEIHRFNRAQQDAFLPFVEKGAIILIGATTENPSFEVNGA-LLSR---CKVFVLKA 163 Query: 173 PDDDFLEKVIVKMFAD-RQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 D+ ++ ++ + D R + + ++ ++ R+ S A + ++ + L+ Sbjct: 164 LDEKAIKGILKRALTDPRGFGKETVHLAEEDLTFLA-RL--SNGDARSALATLEMVVLNG 220 Query: 227 GMG-----ITRSLAAE 237 ++R L + Sbjct: 221 ERKPDGIHVSRELIEQ 236 >gi|332638473|ref|ZP_08417336.1| recombination factor protein RarA [Weissella cibaria KACC 11862] Length = 428 Score = 50.9 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 59/138 (42%), Gaps = 22/138 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117 +IL GP G+GK+ +A+ + ++ + R N A + + +LL++I Sbjct: 42 MILYGPPGTGKTSIASAIAGSTKYAFRILNAATDSKKDLQIVAEEAKMSGTVVLLLDEIH 101 Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 LD D L H+ + +L+ A T + LP + SR + + ++ + Sbjct: 102 RLDKTKQDFLLPHL-----ESGRIVLIGATTENPYLSI-LPAIRSR---SQIFEVQPLSE 152 Query: 176 DFLEKVIVKMF--ADRQI 191 D ++ I + DR + Sbjct: 153 DDMKIAIQRALTDKDRGL 170 >gi|295695374|ref|YP_003588612.1| Chromosomal replication initiator DnaA [Bacillus tusciae DSM 2912] gi|295410976|gb|ADG05468.1| Chromosomal replication initiator DnaA [Bacillus tusciae DSM 2912] Length = 324 Score = 50.9 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 65/208 (31%), Gaps = 55/208 (26%) Query: 31 SFPRCLGISRDDLLVHSAIEQAVRLIDS-WPSWPSRVVILVGPSGSGKSCLANIWSDKSR 89 +FP DL + AV ++ P P + + + GP G GK+ L ++ Sbjct: 127 NFPEEQKRRFPDLY-----KAAVEFAETVEPGVPMKGLYIFGPPGVGKTHLLLAIVNRLE 181 Query: 90 STRFSNIAKSLDSILIDTRKPV--------LLE---DIDLLDFND-----------TQLF 127 R + D I R + ++E + +L ++ ++F Sbjct: 182 ERRVPTLFVRADMIFDRLRSRIASGQDVEPIVEAYCRVPVLAIDEFAQERPSDFTLEKMF 241 Query: 128 HIINSIHQYDSSLLMTARTFPV--------SWGVCLPDLCSRLKAA-TVVKISLPDDDFL 178 IIN+ L T+ P V + + SR+ + PD Sbjct: 242 RIINARFTTARPTLFTSNYPPPEIYGRVARELEVLVDVMRSRIVQMNRHGHLDGPD---- 297 Query: 179 EKVIVKMFADRQIFIDKKLAAYIVQRME 206 RQ ++ RME Sbjct: 298 -------ARLRQ-------IDWLGPRME 311 >gi|229845598|ref|ZP_04465724.1| recombination factor protein RarA [Haemophilus influenzae 6P18H1] gi|229811465|gb|EEP47168.1| recombination factor protein RarA [Haemophilus influenzae 6P18H1] Length = 446 Score = 50.9 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 45/204 (22%), Positives = 81/204 (39%), Gaps = 37/204 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI-----------LIDTRKPVLL 113 +IL GP G+GK+ LA I + + + R S + + I L D + + + Sbjct: 53 MILWGPPGTGKTTLAEIIAQRINAEVERISAVTSGIKEIREAIDRAKQNRLADRKTILFV 112 Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++ + + F HI + + + + A T S+ + L SR A V + Sbjct: 113 DEVHRFNKSQQDAFLPHI-----EDGTVIFIGATTENPSFELNNA-LLSR---ARVYVLK 163 Query: 172 LPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERS----LVFAEKLVDKMD 220 +E+V+ + D R + +++ L + + + L E +VD D Sbjct: 164 SLTTAEIEQVLQQAVEDPERGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMAD 223 Query: 221 NLALSRGMGITRSLAAEVLKETQQ 244 G I R+L EVL E Q Sbjct: 224 ET--ENGKKIDRTLLKEVLGERQA 245 >gi|225451905|ref|XP_002279064.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 617 Score = 50.9 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 39/213 (18%), Positives = 79/213 (37%), Gaps = 40/213 (18%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110 R V+LVGP G+GK+ LA + ++ FS A + + Sbjct: 363 RGVLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFVELFVGRGAARVRDLFNVARKCAP 422 Query: 111 --VLLEDIDLLDF-------ND-----TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL- 155 + ++++D + ++ QL ++ +++ A P + L Sbjct: 423 SIIFIDELDAVGGKRGRSFNDERDQTLNQLLTEMDGFESDMKVIVIAATNRPEALDAALC 482 Query: 156 -PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 P SR V + PD++ K++ + + D +L +V + + V A Sbjct: 483 RPGRFSR-----KVLVGEPDEEGRRKILAIHLREVPLEEDTRLICNLVASLTQGFVGA-D 536 Query: 215 LVDKMDNLALSRGMG----ITRSLAAEVLKETQ 243 L + ++ AL G +TR E ++ + Sbjct: 537 LANIVNEAALLAGRRGGESVTREDIMEAIERAR 569 >gi|145637468|ref|ZP_01793126.1| predicted ATPase [Haemophilus influenzae PittHH] gi|145269274|gb|EDK09219.1| predicted ATPase [Haemophilus influenzae PittHH] Length = 446 Score = 50.9 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 46/204 (22%), Positives = 81/204 (39%), Gaps = 37/204 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI-----------LIDTRKPVLL 113 +IL GP G+GK+ LA I + + + R S + + I L D + + + Sbjct: 53 MILWGPPGTGKTTLAEIIAQRINAEVERISAVTSGIKEIREAIDRAKQNRLADRKTILFV 112 Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++ + + F HI + S + + A T S+ + L SR A V + Sbjct: 113 DEVHRFNKSQQDAFLPHI-----EDGSVIFIGATTENPSFELNNA-LLSR---ARVYVLK 163 Query: 172 LPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERS----LVFAEKLVDKMD 220 +E+V+ + D R + +++ L + + + L E +VD D Sbjct: 164 SLTTAEIEQVLQQAVEDPERGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMAD 223 Query: 221 NLALSRGMGITRSLAAEVLKETQQ 244 G I R+L EVL E Q Sbjct: 224 ET--ENGKKIDRTLLKEVLGERQA 245 >gi|254427548|ref|ZP_05041255.1| ATPase, AAA family, putative [Alcanivorax sp. DG881] gi|196193717|gb|EDX88676.1| ATPase, AAA family, putative [Alcanivorax sp. DG881] Length = 443 Score = 50.9 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 39/195 (20%), Positives = 66/195 (33%), Gaps = 25/195 (12%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G+GK+ LA I + + ++ S + D R V I L T L Sbjct: 53 MILWGPPGTGKTTLALIMAQTVDAAFI--TLSAVLSGVKDIRAAVEQAQIRLGQGRRTVL 110 Query: 127 F----HIINSIHQYD----------SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 F H N Q + + T L SR A V ++ Sbjct: 111 FVDEVHRFNKAQQDAFLPHVEEGTITFIGATTENPSFELNNA---LLSR---ARVYRLRA 164 Query: 173 PDDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229 D L ++ + D + +D ++ + +++ +LA Sbjct: 165 LAPDDLSGLLGRALQDPALNGMQLDADARELLLNYADGDARRLLNMLEVAADLADQDAPK 224 Query: 230 ITRSLAAEVLKETQQ 244 I L EVL++ + Sbjct: 225 IDAELMREVLRDAVR 239 >gi|145632980|ref|ZP_01788713.1| formyltetrahydrofolate deformylase [Haemophilus influenzae 3655] gi|144986636|gb|EDJ93202.1| formyltetrahydrofolate deformylase [Haemophilus influenzae 3655] Length = 446 Score = 50.9 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 43/202 (21%), Positives = 82/202 (40%), Gaps = 33/202 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI-----------LIDTRKPVLL 113 +IL GP G+GK+ LA I + + + R S + + I L D + + + Sbjct: 53 MILWGPPGTGKTTLAEIIAQRINAEVERISAVTSGIKEIREAIDRAKQNRLADRKTILFV 112 Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++ + + F HI + + + + A T S+ + L SR A V + Sbjct: 113 DEVHRFNKSQQDAFLPHI-----EDGTVIFIGATTENPSFELNNA-LLSR---ARVYVLK 163 Query: 172 LPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA- 223 +E+V+ + D R + +++ L + + + A ++ M ++A Sbjct: 164 SLTTAEIEQVLQQAVEDPERGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMAE 223 Query: 224 -LSRGMGITRSLAAEVLKETQQ 244 G I R+L EVL E Q Sbjct: 224 ETENGKKIDRTLLKEVLGERQA 245 >gi|94987229|ref|YP_595162.1| DNA replication initiation ATPase [Lawsonia intracellularis PHE/MN1-00] gi|94731478|emb|CAJ54841.1| ATPase involved in DNA replication initiation [Lawsonia intracellularis PHE/MN1-00] Length = 440 Score = 50.9 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 35/248 (14%), Positives = 90/248 (36%), Gaps = 45/248 (18%) Query: 22 KNKEEQLFFSFPRCLGISRDDLLVHSA---------I---EQAVRLIDSWPSWPSRVVIL 69 +NK Q P + D+ +++ + ++ + +++++L Sbjct: 92 QNKSTQ-----PTNISQHFDNFIINGKHSWIISIIENILCSVSENILKNTSEEITQLLVL 146 Query: 70 VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL---------------IDTRKPVLLE 114 G +GK+ L +++ + + L I + +L++ Sbjct: 147 FGKQTTGKTHLLRAIANELSKIPSCSFKYTTTDELAFSLNKEPLFLFREHIQSHHIILID 206 Query: 115 DIDLL-DFNDTQLFH--IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 D + + + QL +++ L+++ P++W V ++ SRL+ ++ Sbjct: 207 DFQRVSSYPELQLELTILLDYYKDNKKILIISGTDHPLTWNVS-KEIYSRLEVGLWGELP 265 Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK-------MDNLAL 224 PD D + ++ +++ + K+ I Q SL ++ + ++ L Sbjct: 266 EPDLDIRFRYAQQLSKEKKYILPKEQLLIISQHC-HSLRCLSGILHRTIAHKTLLNRE-L 323 Query: 225 SRGMGITR 232 S IT Sbjct: 324 SEKELITL 331 >gi|145627717|ref|ZP_01783518.1| formyltetrahydrofolate deformylase [Haemophilus influenzae 22.1-21] gi|145639902|ref|ZP_01795502.1| formyltetrahydrofolate deformylase [Haemophilus influenzae PittII] gi|144979492|gb|EDJ89151.1| formyltetrahydrofolate deformylase [Haemophilus influenzae 22.1-21] gi|145270993|gb|EDK10910.1| formyltetrahydrofolate deformylase [Haemophilus influenzae PittII] gi|309751081|gb|ADO81065.1| Recombination factor RarA [Haemophilus influenzae R2866] Length = 446 Score = 50.9 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 45/204 (22%), Positives = 81/204 (39%), Gaps = 37/204 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI-----------LIDTRKPVLL 113 +IL GP G+GK+ LA I + + + R S + + I L D + + + Sbjct: 53 MILWGPPGTGKTTLAEIIAQRINAEVERISAVTSGIKEIREAIDRAKQNRLADRKTILFV 112 Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++ + + F HI + + + + A T S+ + L SR A V + Sbjct: 113 DEVHRFNKSQQDAFLPHI-----EDGTVIFIGATTENPSFELNNA-LLSR---ARVYVLK 163 Query: 172 LPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERS----LVFAEKLVDKMD 220 +E+V+ + D R + +++ L + + + L E +VD D Sbjct: 164 SLTTAEIEQVLQQAVEDPERGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMAD 223 Query: 221 NLALSRGMGITRSLAAEVLKETQQ 244 G I R+L EVL E Q Sbjct: 224 ET--ENGKKIDRTLLKEVLGERQA 245 >gi|237733075|ref|ZP_04563556.1| ATPase [Mollicutes bacterium D7] gi|229383877|gb|EEO33968.1| ATPase [Coprobacillus sp. D7] Length = 440 Score = 50.9 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 69/179 (38%), Gaps = 29/179 (16%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDF- 121 ++ GP G GK+ LA I ++++++ FS + + I ++ ++D+ Sbjct: 51 PSMVFWGPPGVGKTTLARIIANQTKAKFINFSAVTSGIKDIRAVMKQAQEVQDLGEKTIV 110 Query: 122 --NDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 ++ H N + S +L+ A T S+ + L SR V + Sbjct: 111 FVDEI---HRFNKAQQDAFLPYVEQGSIILIGATTENPSFEINSA-LLSR---CKVFVLK 163 Query: 172 LPDDDFLEKVIV------KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 D L ++ K F D+ + ID L Y++ S A ++ ++ L Sbjct: 164 ALTTDDLFGLLHYALISPKGFKDQNVMIDDDLL-YMIAGF--SNGDARVALNTLEMAVL 219 >gi|167756420|ref|ZP_02428547.1| hypothetical protein CLORAM_01953 [Clostridium ramosum DSM 1402] gi|167703828|gb|EDS18407.1| hypothetical protein CLORAM_01953 [Clostridium ramosum DSM 1402] Length = 444 Score = 50.9 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 69/179 (38%), Gaps = 29/179 (16%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDF- 121 ++ GP G GK+ LA I ++++++ FS + + I ++ ++D+ Sbjct: 55 PSMVFWGPPGVGKTTLARIIANQTKAKFINFSAVTSGIKDIRAVMKQAQEVQDLGEKTIV 114 Query: 122 --NDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 ++ H N + S +L+ A T S+ + L SR V + Sbjct: 115 FVDEI---HRFNKAQQDAFLPYVEQGSIILIGATTENPSFEINSA-LLSR---CKVFVLK 167 Query: 172 LPDDDFLEKVIV------KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 D L ++ K F D+ + ID L Y++ S A ++ ++ L Sbjct: 168 ALTTDDLFGLLHYALISPKGFKDQNVMIDDDLL-YMIAGF--SNGDARVALNTLEMAVL 223 >gi|187250562|ref|YP_001875044.1| ATPase family protein [Elusimicrobium minutum Pei191] gi|186970722|gb|ACC97707.1| ATPase family protein [Elusimicrobium minutum Pei191] Length = 416 Score = 50.9 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 40/245 (16%), Positives = 80/245 (32%), Gaps = 48/245 (19%) Query: 31 SFPRCLGISR---DDL-----LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 P ++ DD ++ R+I+S + + GP G GK+ LA Sbjct: 7 DMPLAAAMAPKNLDDFAGQKHVIGPG-RMLRRMIESD---TIKSAVFFGPPGVGKTALAR 62 Query: 83 IWSDKSRSTRFSNIAKSLD--------SILIDTRKPVLLEDIDLLDFNDTQLFHIINSIH 134 + K+ + A + + R LE L+ ++ H N Sbjct: 63 FIASKTEAVTVELNAAAAGVGDIKKVIEEAKERRNDTFLEKRTLVVLDEI---HHFNKTQ 119 Query: 135 --------QYDSSLL--MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + +L +T L SR V + D LE+++ + Sbjct: 120 QDVLLPSVERGDIILIGLTTENPYFYINNA---LLSRFS---VFEFKPLDAKDLEQILKR 173 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM------GITRSLAAEV 238 + ++ I K + + + A +L++ +D L+ IT +A E Sbjct: 174 VLKIKEAKIQKDAKDFFITQAN---GDARRLLNAVDLAILTTAKDSDGIVNITMDVAKEC 230 Query: 239 LKETQ 243 +++ Sbjct: 231 MQKRH 235 >gi|268537192|ref|XP_002633732.1| Hypothetical protein CBG03417 [Caenorhabditis briggsae] gi|187036639|emb|CAP24316.1| hypothetical protein CBG_03417 [Caenorhabditis briggsae AF16] Length = 840 Score = 50.9 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 34/203 (16%), Positives = 75/203 (36%), Gaps = 31/203 (15%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSR----------STRFSNIAKSLDSILIDTR------ 108 ++++L GP+G GKS LA I + ++ + +++ K L+ + +R Sbjct: 318 KMLLLSGPAGLGKSTLARIVASQAGYATIDVNASDARTVADLNKVLEGAVKTSRTLDGDQ 377 Query: 109 --KPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSW--GV---CLPDLCSR 161 ++L++ID + + H+I + + R + + L DL Sbjct: 378 RPACLILDEIDGTPIDTIR--HLIRCLQATGKKAV---RRPIIGICNNLYTPALRDLR-- 430 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 A V++S D L K + ++ + D + + + + Sbjct: 431 -GVAWCVQLSATKQDALAKRLEQICDMENLRCDLSTLRKLCDLCANDMRHSINTLQWAAV 489 Query: 222 LALSRGMGITRSLAAEVLKETQQ 244 + IT L EV+++ + Sbjct: 490 ASNKTKRSITMKLIHEVVEKEKG 512 >gi|258653083|ref|YP_003202239.1| SARP family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258556308|gb|ACV79250.1| transcriptional regulator, SARP family [Nakamurella multipartita DSM 44233] Length = 885 Score = 50.9 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 59/156 (37%), Gaps = 16/156 (10%) Query: 65 RVVILVGPSGSGKSCLANI-----WSDKSRSTRFSNIAKSLDSI---LIDTRKPVLLEDI 116 R++++ GPSGSGKS L ++ + A L ++ + + ++++ Sbjct: 292 RILVITGPSGSGKSSLVRAGLAARFARGGHPVVITPGADPLAAVGPEPLPAGELLVVDQA 351 Query: 117 DLL-----DFNDTQLFHIINSIHQYD-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 + L D + F + I +D L+M R V PD RL + + Sbjct: 352 EELFTLTTDPDARSQF-LARLIRHHDRGPLVMVLRADRVGDLAAFPDFA-RLAERELYLL 409 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206 D L I + ++ L +V+ +E Sbjct: 410 GPLTDAGLRAAIEGPARQAGLLLEPGLVDLLVRDVE 445 >gi|156741065|ref|YP_001431194.1| recombination factor protein RarA [Roseiflexus castenholzii DSM 13941] gi|156232393|gb|ABU57176.1| AAA ATPase central domain protein [Roseiflexus castenholzii DSM 13941] Length = 544 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 61/158 (38%), Gaps = 28/158 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125 +IL GP GSGK+ LA I +D + + S S + + V+ E D L + Sbjct: 60 IILWGPPGSGKTTLARIIADTTHAHF---EQLSAVSAGVADLRRVVKEAQDRLGMFQQRT 116 Query: 126 -LF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +F H N + + +L+ A T S+ V P L SR A V + Sbjct: 117 IVFIDEIHRFNKAQQDAILPYVEDGTIILIGATTENPSFEVN-PALRSR---ARVFVLES 172 Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQ 203 D+ + ++ + D R + + Y++ Sbjct: 173 LTDEQIGVIVDRALTDAERGLGALNVLLAADARGYLIN 210 >gi|218289659|ref|ZP_03493879.1| DNA replication protein-like protein [Alicyclobacillus acidocaldarius LAA1] gi|218240309|gb|EED07492.1| DNA replication protein-like protein [Alicyclobacillus acidocaldarius LAA1] Length = 306 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 56/159 (35%), Gaps = 33/159 (20%) Query: 49 IEQAVRLIDSW--PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID 106 + A +W P + L GP G GK+ L + + ++ DS+ Sbjct: 138 LRYAQEFARTWSPQEAPRAGLYLFGPPGVGKTHLMFAVFRELQRRGVPSLVVRSDSLFDH 197 Query: 107 TRKPVLL-EDIDL----------LDFND-----------TQLFHIINSIHQYDSSLLMTA 144 R + ED++ L ++ +LF IIN + S T+ Sbjct: 198 MRHVIAAGEDLEPFLETLSTVPVLGVDEFAQERANEFSMEKLFRIINYRFHHKLSTWFTS 257 Query: 145 R-TFPVSWGVCLPD-------LCSR-LKAATVVKISLPD 174 + P ++ + D L SR + +VK+ PD Sbjct: 258 NFSPPDAYRRGVDDLLDTVAPLRSRVMSMCILVKMDGPD 296 >gi|296162697|ref|ZP_06845483.1| IstB domain protein ATP-binding protein [Burkholderia sp. Ch1-1] gi|295887085|gb|EFG66917.1| IstB domain protein ATP-binding protein [Burkholderia sp. Ch1-1] Length = 271 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 50/150 (33%), Gaps = 30/150 (20%) Query: 29 FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS 88 F F +V A A+ DSW ++L GP G GKS L + Sbjct: 77 TFDFGVVP-------MVSKAHVMALATGDSWLE-KGATILLFGPPGGGKSHLGSAIGHAL 128 Query: 89 RSTRFSNIAKSLDSIL------------------IDTRKPVLLEDIDLLDFNDTQ---LF 127 + + I+ +D ++L+D+ + + + LF Sbjct: 129 IDAGYRVLFTRTGEIVQKLQVARQSLQLPSALAKLDRFDLIILDDLSYVRKDQAETSVLF 188 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 +I + SLL+TA W PD Sbjct: 189 ELI-AERYERKSLLITANQPFSGWNDVFPD 217 >gi|229582087|ref|YP_002840486.1| replication factor C large subunit [Sulfolobus islandicus Y.N.15.51] gi|259585461|sp|C3NHF4|RFCL_SULIN RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|228012803|gb|ACP48564.1| AAA ATPase central domain protein [Sulfolobus islandicus Y.N.15.51] Length = 405 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 36/170 (21%), Positives = 67/170 (39%), Gaps = 28/170 (16%) Query: 54 RLIDSWPSW-PSRVVIL-VGPSGSGKSCLANIWSDKSRSTR----------------FSN 95 I+SW + P+ +L GP G GK+ LA + + Sbjct: 28 EWIESWLNGKPNAKAVLLHGPPGVGKTTLAEAVAHDYNLELLEMNASDSRKLQDIKGVAE 87 Query: 96 IAKSLDSILIDTRKPVLLEDIDLLDFNDT--QLFHIINSIHQYDSSLLMTARTFPVSWGV 153 A SI K +LL+++D ++ + + I+ I + ++MTA W Sbjct: 88 KASVYGSIFGTRGKLILLDEVDGINVREDTGAIQGILELIEKTKYPIIMTANDP---WNP 144 Query: 154 CLPDLCSRLKAATVVKISL-PDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 L +L ++ K + K+ P L +++ K+ +I D + YI+ Sbjct: 145 ALRELRNKTKMVGLNKLGKYP----LRRLLKKICQAEKIICDDEALNYII 190 >gi|50303471|ref|XP_451677.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49640809|emb|CAH02070.1| KLLA0B03234p [Kluyveromyces lactis] Length = 804 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 63/168 (37%), Gaps = 36/168 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P R ++L GP G+GK+ L ++++ + + S+ S + + L Sbjct: 303 PPRGILLHGPPGTGKTMLLRCVANETDAHILTISGPSIVSKYLGETEAALRDIFNEAKRY 362 Query: 113 ------LEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 +++ID L N L +++ + ++ A P S Sbjct: 363 QPSIIFIDEIDSLAPNRANDDSGEVESRVVATLLTLMDGMDGSGRLAVVAATNRPNSID- 421 Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD----RQIFIDKKL 197 P L + ++IS+PD + ++ K F+ RQ+ + + Sbjct: 422 --PALRRPGRFDQEIEISIPDVEARHDILRKQFSRMSKQRQLLSPEDI 467 >gi|242373927|ref|ZP_04819501.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus epidermidis M23864:W1] gi|242348481|gb|EES40083.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus epidermidis M23864:W1] Length = 422 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 35/200 (17%), Positives = 73/200 (36%), Gaps = 39/200 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117 +I GP G GK+ +A S ++ + ++ ++ + + +LL++I Sbjct: 43 MIFYGPPGIGKTSIAKAISGSTQFKFRQLNAVTNTKKDMQMVVEEAKMSGQVILLLDEIH 102 Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 L D L H+ N +L+ T + P + SR A + ++ Sbjct: 103 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 151 Query: 174 DDDFLEKVIVKMF--ADRQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 DD + + + +DR + +D+ Y + S ++ ++ LS Sbjct: 152 DDHDVRIALDRAIDDSDRGLKSYHPVVDEDAMEYFSTQ---SQGDVRSALNALELAVLSA 208 Query: 227 -----GMGITRSLAAEVLKE 241 IT A + L++ Sbjct: 209 DEENNQRHITLDDAKDCLQK 228 >gi|297566961|ref|YP_003685933.1| Holliday junction DNA helicase RuvB [Meiothermus silvanus DSM 9946] gi|296851410|gb|ADH64425.1| Holliday junction DNA helicase RuvB [Meiothermus silvanus DSM 9946] Length = 326 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 31/206 (15%), Positives = 79/206 (38%), Gaps = 30/206 (14%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLL 113 P ++L GP G GK+ LA++ +++ + ++ + I+ + + Sbjct: 38 PLDHMLLFGPPGLGKTTLAHVIANELGVNIRVTSGPAIEKPGDLAAIVTNSIEEGDILFI 97 Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD---------------- 157 ++I L + H+ ++ + +++ + + LP Sbjct: 98 DEIHRLSRAAEE--HLYPAMEDFKIDIVIGQGPAARTLRLDLPRFTLIGATTRPGLISGP 155 Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 L SR + + ++ L + +++ A + I ++ A I +R ++ A++L Sbjct: 156 LRSRF--GIIEHLEFYTEEELAQGVMRDAALIGLAITEEAAHEIGRRSRGTMRIAKRLFR 213 Query: 218 KM-DNLALSRGMGITRSLAAEVLKET 242 ++ D ++ +T A E L Sbjct: 214 RVRDYAEVAGEDTVTLERAREALDAL 239 >gi|189230336|ref|NP_001121492.1| Werner helicase interacting protein 1 [Xenopus (Silurana) tropicalis] gi|183985959|gb|AAI66299.1| LOC100158593 protein [Xenopus (Silurana) tropicalis] Length = 577 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 52/148 (35%), Gaps = 28/148 (18%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA+I + + + S S + V+ N+ Sbjct: 190 PSIILWGPPGCGKTTLAHIIAKNTHKNSCRFVTLSATSASTSDVREVI-----KQAQNEQ 244 Query: 125 QLF-----------HIINSIHQY--------DSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 +LF H N Q + L+ A T S+ V L SR Sbjct: 245 RLFKRKTILFVDEIHRFNKTQQDTFLPHVECGTITLIGATTENPSFQVNTA-LLSR---C 300 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFI 193 V+ + + +E ++++ I + Sbjct: 301 RVIVLEKLSVEAMEAILMRAVGSLGIKV 328 >gi|189346365|ref|YP_001942894.1| recombination factor protein RarA [Chlorobium limicola DSM 245] gi|189340512|gb|ACD89915.1| AAA ATPase central domain protein [Chlorobium limicola DSM 245] Length = 449 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 51/137 (37%), Gaps = 22/137 (16%) Query: 65 RVVILVGPSGSGKSCLANIWSDK--SRSTRFSNIAKSLDSILIDTRKP-----------V 111 +IL GP GSGK+ LA I + R + S I + + + Sbjct: 64 PSMILWGPPGSGKTTLAEICATSLHYRFEQLSAIDAGVKEVRKALDGARQARRSGQRTIL 123 Query: 112 LLEDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 +++I + L H I + L+ A T S+ V L SR++ V + Sbjct: 124 FIDEIHRFNKAQQDTLLHAI----EQGLITLIGATTENPSFEVNGA-LLSRMQ---VYIL 175 Query: 171 SLPDDDFLEKVIVKMFA 187 + +E VI + A Sbjct: 176 QPLSEQDIEAVIRRAVA 192 >gi|314933792|ref|ZP_07841157.1| ATPase, AAA family [Staphylococcus caprae C87] gi|313653942|gb|EFS17699.1| ATPase, AAA family [Staphylococcus caprae C87] Length = 422 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 33/197 (16%), Positives = 73/197 (37%), Gaps = 33/197 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117 +I GP G GK+ +A S ++ + ++ ++ + + +LL++I Sbjct: 43 MIFYGPPGIGKTSIAKAISGSTQFKFRQLNAVTNTKKDMQMVVEEAKMSGQVILLLDEIH 102 Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 L D L H+ N +L+ T + P + SR A + ++ Sbjct: 103 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 151 Query: 174 DDDFLEKVIVKMF--ADRQIF-----IDKKLAAYIVQRMERSLVFAEKLVDK--MDNLAL 224 DD + + + +DR + +D+ Y + + + A ++ + + Sbjct: 152 DDHDVRIALDRAIEDSDRGLKSYHPNVDEDGMEYFSTQSQGDVRSALNALELAVLSAEVV 211 Query: 225 SRGMGITRSLAAEVLKE 241 IT A + L++ Sbjct: 212 ENQRHITLDDAKDCLQK 228 >gi|226355347|ref|YP_002785087.1| recombination factor protein RarA [Deinococcus deserti VCD115] gi|226317337|gb|ACO45333.1| putative DNA-dependent ATPase [Deinococcus deserti VCD115] Length = 451 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 67/175 (38%), Gaps = 25/175 (14%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA + + + + + A S + + D R+ V + T Sbjct: 62 GSLILWGPPGVGKTTLARLVAGEVGAHFIALSAVS--AGVKDVREAVTEAERLRARGTRT 119 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + L+ A T S+ V P L SR A + + Sbjct: 120 ILFLDEIHRFNKAQQDALLPHVESGLLTLIGATTENPSFEVN-PALRSR---ARTLVLEA 175 Query: 173 PDDDFLEKVIVKMFAD-RQI---FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + ++ ++ + +D R + ++ + + + + A + + ++ A Sbjct: 176 LTQEDIKGLLERALSDERGLPGVSVEPEALDLLARLAD---GDARRALSTLEVAA 227 >gi|152967771|ref|YP_001363555.1| ATPase AAA [Kineococcus radiotolerans SRS30216] gi|151362288|gb|ABS05291.1| AAA ATPase central domain protein [Kineococcus radiotolerans SRS30216] Length = 458 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 39/203 (19%), Positives = 69/203 (33%), Gaps = 58/203 (28%) Query: 65 RVVILVGPSGSGKS----CLANIWSDKS----RSTRFSNIAKSLDSILIDTRKPVLLEDI 116 R V+L GP G+GK+ L + D + + + + V+LED Sbjct: 249 RGVLLYGPPGTGKTLTVRHLVSRARDSTVVLLSGQSLALVTTAAHLARAMQPAIVVLEDC 308 Query: 117 DLLDFNDTQ-------LFHIINSIH----QYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 DL+ + Q LF +++++ D + L+T DL R A Sbjct: 309 DLVAEDRGQSPGERPLLFELLDAMDGLDGDADVAFLLTTNRA---------DLLERALAQ 359 Query: 166 ------TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 V++ LPD+ + R + + ++ Sbjct: 360 RPGRVDLAVEVPLPDEAARHALF--RLYARGLGVSDEVL--------------------- 396 Query: 220 DNLALSRGMGITRSLAAEVLKET 242 A +R G+T S A E+L+ Sbjct: 397 -REAAARSAGVTASFARELLRRA 418 >gi|298204408|emb|CBI16888.3| unnamed protein product [Vitis vinifera] Length = 471 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 39/213 (18%), Positives = 79/213 (37%), Gaps = 40/213 (18%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110 R V+LVGP G+GK+ LA + ++ FS A + + Sbjct: 217 RGVLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFVELFVGRGAARVRDLFNVARKCAP 276 Query: 111 --VLLEDIDLLDF-------ND-----TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL- 155 + ++++D + ++ QL ++ +++ A P + L Sbjct: 277 SIIFIDELDAVGGKRGRSFNDERDQTLNQLLTEMDGFESDMKVIVIAATNRPEALDAALC 336 Query: 156 -PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 P SR V + PD++ K++ + + D +L +V + + V A Sbjct: 337 RPGRFSR-----KVLVGEPDEEGRRKILAIHLREVPLEEDTRLICNLVASLTQGFVGA-D 390 Query: 215 LVDKMDNLALSRGMG----ITRSLAAEVLKETQ 243 L + ++ AL G +TR E ++ + Sbjct: 391 LANIVNEAALLAGRRGGESVTREDIMEAIERAR 423 >gi|221195770|ref|ZP_03568823.1| recombination factor protein RarA [Atopobium rimae ATCC 49626] gi|221184244|gb|EEE16638.1| recombination factor protein RarA [Atopobium rimae ATCC 49626] Length = 465 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 56/136 (41%), Gaps = 23/136 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS--------------LDSILIDTRKPVL 112 V+L GP+G+GK+ LA+I ++ + + A + + TR + Sbjct: 56 VLLYGPAGTGKTTLAHIIANSTHAAFVEVSAITGTVKDLRREIEAAESRLLTAGTRTILF 115 Query: 113 LEDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++I + L H + + +L+ A T + V L SR + VV++ Sbjct: 116 IDEIHRFNRSQQDALLH----AVEDRTVVLIGATTENPYFEVNSA-LISR---SRVVELY 167 Query: 172 LPDDDFLEKVIVKMFA 187 DD+ + +I + Sbjct: 168 PLDDEAISHLIERACE 183 >gi|301091915|ref|XP_002896132.1| cell division control protein 48 [Phytophthora infestans T30-4] gi|262094952|gb|EEY53004.1| cell division control protein 48 [Phytophthora infestans T30-4] Length = 804 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 69/171 (40%), Gaps = 35/171 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R V+L GP GSGK+ +A ++++ + F SN+ K+ + + Sbjct: 232 PPRGVLLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 291 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + Q S +++ A P S Sbjct: 292 APAIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKQRASVVVIGATNRPNSMD-- 349 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 P L R + + I +PD++ ++ R + +D + ++ R Sbjct: 350 -PALR-RFGRFDREIDIGVPDENGRLEIF--RIHTRNMKLDDDVDPEMIAR 396 Score = 39.0 bits (90), Expect = 0.64, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 505 PSKGVLFYGPPGCGKTLLAKAVANECQANFISIKGPELLTMWFGESEANVREVFDKARG 563 >gi|296004694|ref|XP_966179.2| cell division cycle protein 48 homologue, putative [Plasmodium falciparum 3D7] gi|225631753|emb|CAG25009.2| cell division cycle protein 48 homologue, putative [Plasmodium falciparum 3D7] Length = 828 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 64/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R V+L GP GSGK+C+A ++++ + F +N+ ++ + + Sbjct: 240 PPRGVLLYGPPGSGKTCIARAVANETGAFFFLINGPEVMSKMAGEAEANLRRAFEEAEKN 299 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ I +++ A Sbjct: 300 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGIKSRGQVVVIAAT---NRQNSI 356 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PDD+ +++ + + + + Sbjct: 357 DPALR-RFGRFDREIDIGVPDDNGRFEIL--RIHTKNMKLSPDV 397 Score = 39.0 bits (90), Expect = 0.59, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 24/57 (42%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA + + + S L ++ + + E D Sbjct: 513 PSRGVLFYGPPGCGKTLLAKAVASECSANFVSIKGPELLTMWFGESEANVREVFDKA 569 >gi|221057948|ref|XP_002261482.1| cell division cycle protein 48 homologue [Plasmodium knowlesi strain H] gi|194247487|emb|CAQ40887.1| cell division cycle protein 48 homologue,putative [Plasmodium knowlesi strain H] Length = 822 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 64/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R V+L GP GSGK+C+A ++++ + F +N+ ++ + + Sbjct: 240 PPRGVLLYGPPGSGKTCIARAVANETGAFFFLINGPEVMSKMAGEAEANLRRAFEEAEKN 299 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ I +++ A Sbjct: 300 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGIKSRGQVVVIAAT---NRQNSI 356 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PDD+ +++ + + + + Sbjct: 357 DPALR-RFGRFDREIDIGVPDDNGRFEIL--RIHTKNMKLSPDV 397 Score = 39.0 bits (90), Expect = 0.59, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 24/57 (42%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA + + + S L ++ + + E D Sbjct: 513 PSRGVLFYGPPGCGKTLLAKAVASECSANFVSIKGPELLTMWFGESEANVREVFDKA 569 >gi|189205687|ref|XP_001939178.1| ribosome biogenesis ATPase RIX7 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187975271|gb|EDU41897.1| ribosome biogenesis ATPase RIX7 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 740 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 40/196 (20%), Positives = 75/196 (38%), Gaps = 43/196 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRF--------------SNIAKSLDSILIDTRKPVL 112 V+L GP G GK+ LA + +S++ S A + + P + Sbjct: 515 VLLWGPPGCGKTLLAKAVAAESKANFISVKGPELLNKYVGESERALRQVFMRARSSVPCV 574 Query: 113 L--EDIDLLDFNDTQLFH-----IINSIH-------QYDSSLLMTARTFPVSWGVCLPDL 158 + +++D L + H ++N++ + + L+ A P + L Sbjct: 575 IFFDELDALVPKRSAELHEASARVVNTLLTELDGLSEREGIYLIAATNRPEMIDEAM--L 632 Query: 159 C-SRLKAATVVKISLPDD--DFLEKVIVKMFADRQIFIDKKLAAYIVQRMER----SLVF 211 RL+ V++ P++ D L+ +I + R I +LA + R++ S Sbjct: 633 RPGRLETLLYVELPKPEERVDILKALIRQ----RGGLISPELAE--IARLDACKDFSGAD 686 Query: 212 AEKLVDKMDNLALSRG 227 E L+ K AL R Sbjct: 687 LESLLRKAGQHALRRR 702 >gi|148551020|ref|YP_001260450.1| IstB ATP binding domain-containing protein [Sphingomonas wittichii RW1] gi|293980667|ref|YP_003543425.1| putative transposase-associated ATP-binding protein [Sphingobium japonicum UT26S] gi|148503431|gb|ABQ71683.1| IstB domain protein ATP-binding protein [Sphingomonas wittichii RW1] gi|292677684|dbj|BAI99199.1| putative transposase-associated ATP-binding protein [Sphingobium japonicum UT26S] Length = 287 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 22/112 (19%) Query: 67 VILVGPSGSGKSCLANI---------WS-------DKSRSTRFSNIAKSLDSIL--IDTR 108 +IL GP G GKS LA W + + + + +L+S + +D Sbjct: 109 LILFGPPGGGKSHLAAAIGLQLVQNGWRVLFTRTSELVQKLQLARRELALESAIAKLDKY 168 Query: 109 KPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 ++L+D+ + + + LF +I S S+L+TA W PD Sbjct: 169 HLLILDDLAYVAKDQAETSVLFELI-SARYERRSMLITANQPFGEWNRVFPD 219 >gi|68068609|ref|XP_676215.1| cell division cycle protein [Plasmodium berghei strain ANKA] gi|56495807|emb|CAH97250.1| cell division cycle protein 48 homologue, putative [Plasmodium berghei] Length = 500 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 64/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R V+L GP GSGK+C+A ++++ + F +N+ ++ + + Sbjct: 238 PPRGVLLYGPPGSGKTCIARAVANETGAFFFLINGPEVMSKMAGEAEANLRRAFEEAEKN 297 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ I +++ A Sbjct: 298 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGIKSRGQVVVIAAT---NRQNSI 354 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PDD+ +++ + + + + Sbjct: 355 DPALR-RFGRFDREIDIGVPDDNGRFEIL--RIHTKNMKLSPDV 395 >gi|82538797|ref|XP_723826.1| cell division cycle protein 48 [Plasmodium yoelii yoelii str. 17XNL] gi|23478257|gb|EAA15391.1| cell division cycle protein 48 homolog [Plasmodium yoelii yoelii] Length = 815 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 64/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R V+L GP GSGK+C+A ++++ + F +N+ ++ + + Sbjct: 238 PPRGVLLYGPPGSGKTCIARAVANETGAFFFLINGPEVMSKMAGEAEANLRRAFEEAEKN 297 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ I +++ A Sbjct: 298 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGIKSRGQVVVIAAT---NRQNSI 354 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PDD+ +++ + + + + Sbjct: 355 DPALR-RFGRFDREIDIGVPDDNGRFEIL--RIHTKNMKLSPDV 395 Score = 39.0 bits (90), Expect = 0.59, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 24/57 (42%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA + + + S L ++ + + E D Sbjct: 511 PSRGVLFYGPPGCGKTLLAKAVASECSANFVSIKGPELLTMWFGESEANVREVFDKA 567 >gi|269119747|ref|YP_003307924.1| ATPase AAA [Sebaldella termitidis ATCC 33386] gi|268613625|gb|ACZ07993.1| AAA ATPase central domain protein [Sebaldella termitidis ATCC 33386] Length = 408 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 33/172 (19%), Positives = 62/172 (36%), Gaps = 27/172 (15%) Query: 68 ILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 I GPSG+GK+ LA I +++ + I +K +E Sbjct: 52 IFWGPSGTGKTTLAEIVAEQLNYYYEYLNATKASVNDIKEIAEKAKKRFSIE------GK 105 Query: 123 DTQLF----HIINSIHQY--------DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 T LF H N + Q + +L+ A T + + L SR + + Sbjct: 106 QTILFFDEIHRFNKLQQDSLLHDIEIGNIILIGATTENPYFNLNNA-LLSR---CLMFEF 161 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 D + + ++ ++ +I + + YI +E A ++ + NL Sbjct: 162 KKLDKEDIFGILKRIREKEEIELSDDVLNYISDIVEGDARQAINFLELLSNL 213 >gi|301170352|emb|CBW29958.1| recombination protein [Haemophilus influenzae 10810] Length = 446 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 42/202 (20%), Positives = 82/202 (40%), Gaps = 33/202 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI-----------LIDTRKPVLL 113 +IL GP G+GK+ LA I + + + R S + + I L D + + + Sbjct: 53 MILWGPPGTGKTTLAEIIAQRINAEVERISAVTSGIKEIREAIDRAKQNRLADRKTILFV 112 Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++ + + F HI + + + + A T S+ + L SR A V + Sbjct: 113 DEVHRFNKSQQDAFLPHI-----EDGTVIFIGATTENPSFELNNA-LLSR---ARVYVLK 163 Query: 172 LPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA- 223 +E+V+ + D R + +++ L + + + A ++ + ++A Sbjct: 164 SLTTAEIEQVLQQAVEDPERGLGKERLILEENLLQVLAEYVNGDARLALNCLELVVDMAE 223 Query: 224 -LSRGMGITRSLAAEVLKETQQ 244 G I R+L EVL E Q Sbjct: 224 ETENGKKIDRTLLKEVLGERQA 245 >gi|217961392|ref|YP_002339960.1| hypothetical protein BCAH187_A4023 [Bacillus cereus AH187] gi|217065890|gb|ACJ80140.1| putative prophage LambdaBa02, DNA replication protein DnaC [Bacillus cereus AH187] Length = 263 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 51/125 (40%), Gaps = 24/125 (19%) Query: 52 AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------- 104 AV+ + ++ W ++L G G+GK+ LA ++ + + +S+ +L Sbjct: 99 AVKYVKTFKEWKGESLLLWGEPGNGKTHLAAAIVNELSKKGYIVVFQSVPELLQRIRSTF 158 Query: 105 --------------IDTRKPVLLEDIDL---LDFNDTQLFHIINSIHQYDSSLLMTARTF 147 + ++L+DI ++ + +LF+II+ ++ + L T+ Sbjct: 159 NSENKENETQIMRALLECDLLILDDIGAEKTTEWVEEKLFNIIDGRYRKELPTLYTSNLE 218 Query: 148 PVSWG 152 P Sbjct: 219 PKELK 223 >gi|220907524|ref|YP_002482835.1| IstB domain-containing protein ATP-binding protein [Cyanothece sp. PCC 7425] gi|220907691|ref|YP_002483002.1| IstB domain-containing protein ATP-binding protein [Cyanothece sp. PCC 7425] gi|220908363|ref|YP_002483674.1| IstB domain-containing protein ATP-binding protein [Cyanothece sp. PCC 7425] gi|220908465|ref|YP_002483776.1| IstB domain-containing protein ATP-binding protein [Cyanothece sp. PCC 7425] gi|220909062|ref|YP_002484373.1| IstB domain-containing protein ATP-binding protein [Cyanothece sp. PCC 7425] gi|220909677|ref|YP_002484988.1| IstB domain-containing protein ATP-binding protein [Cyanothece sp. PCC 7425] gi|220910644|ref|YP_002485954.1| IstB domain protein ATP-binding protein [Cyanothece sp. PCC 7425] gi|220910680|ref|YP_002485990.1| IstB domain protein ATP-binding protein [Cyanothece sp. PCC 7425] gi|219864135|gb|ACL44474.1| IstB domain protein ATP-binding protein [Cyanothece sp. PCC 7425] gi|219864302|gb|ACL44641.1| IstB domain protein ATP-binding protein [Cyanothece sp. PCC 7425] gi|219864974|gb|ACL45313.1| IstB domain protein ATP-binding protein [Cyanothece sp. PCC 7425] gi|219865076|gb|ACL45415.1| IstB domain protein ATP-binding protein [Cyanothece sp. PCC 7425] gi|219865673|gb|ACL46012.1| IstB domain protein ATP-binding protein [Cyanothece sp. PCC 7425] gi|219866288|gb|ACL46627.1| IstB domain protein ATP-binding protein [Cyanothece sp. PCC 7425] gi|219867416|gb|ACL47753.1| IstB domain protein ATP-binding protein [Cyanothece sp. PCC 7425] gi|219867452|gb|ACL47789.1| IstB domain protein ATP-binding protein [Cyanothece sp. PCC 7425] Length = 236 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 54/157 (34%), Gaps = 41/157 (26%) Query: 25 EEQLF-------FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVV--ILVGPSGS 75 E QL F F C + + W +R IL+GPSG Sbjct: 44 EAQLPAAKSFTNFDFSHCPQF----------NPAPLMQLAQTTDWLARAQNCILLGPSGV 93 Query: 76 GKSCLAN--------------IWSDKSRSTRFSNIAKSLDSIL----IDTRKPVLLEDID 117 GK+ LA ++ + + + L +D ++L+D+ Sbjct: 94 GKTHLAASLARRCIELGKRVKFFAATALVQQLQDAKLQLQLYPLLKKLDRYDLLVLDDLG 153 Query: 118 LLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSW 151 + N+T+ LF +I + SLL+TA W Sbjct: 154 YVKKNETETSVLFELI-AHRYERKSLLITANQPFSQW 189 >gi|78042989|ref|YP_361014.1| recombination factor protein RarA [Carboxydothermus hydrogenoformans Z-2901] gi|77995104|gb|ABB14003.1| ATPase, AAA family [Carboxydothermus hydrogenoformans Z-2901] Length = 444 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 34/206 (16%), Positives = 76/206 (36%), Gaps = 41/206 (19%) Query: 65 RVVILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 +I GP G+GK+ LA I + KS + + + I +K ++ + Sbjct: 52 GSLIFYGPPGTGKTTLARIIASTTKSGFESINAVTSGVGEIREVIKKA---KEREKYYGE 108 Query: 123 DTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 T LF H N + + +L+ A T + V P L SR + + + Sbjct: 109 RTVLFIDEIHRFNKAQQDALLPEVEAGTIVLIGATTENPYFEVNAP-LLSR---SRIFEF 164 Query: 171 SLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVF--AEKLVDKMDN 221 + + + +++ + D R + I ++ ++V + A ++ ++ Sbjct: 165 KPLEPEHIREIVRRALVDKERGLGEYKVEISEEALDHLVT-----MAAGDARAALNGIEL 219 Query: 222 LALSRG------MGITRSLAAEVLKE 241 L+ IT + + +++ Sbjct: 220 AVLTTPPDEDGVRKITVEIIEQSMQK 245 >gi|332796393|ref|YP_004457893.1| AAA ATPase [Acidianus hospitalis W1] gi|332694128|gb|AEE93595.1| AAA family ATPase, CDC48 subfamily [Acidianus hospitalis W1] Length = 750 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 57/163 (34%), Gaps = 33/163 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106 P + ++L GP G GK+ LA +++ + S + + D + Sbjct: 210 PPKGILLYGPPGVGKTLLARALANEIGAYFISINGPEIMSKFYGESEERLRQIFDEANKN 269 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ I +++ A P + Sbjct: 270 APSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGIKGRGKIIVIGATNRPDAID-- 327 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L + ++I PD ++++ R + + + Sbjct: 328 -PALRRPGRFDREIEIRPPDTKARKEILQVH--TRSMPLSDDV 367 >gi|317120879|ref|YP_004100882.1| IstB domain protein ATP-binding protein [Thermaerobacter marianensis DSM 12885] gi|315590859|gb|ADU50155.1| IstB domain protein ATP-binding protein [Thermaerobacter marianensis DSM 12885] Length = 247 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 18/138 (13%) Query: 43 LLVHSAIEQAV----RLIDSW-PSWPSRVVILVGPSGSGKSCLANI-------WSDKSRS 90 A E+A ++++ P +I VGP G+GK+ LA + Sbjct: 94 FRRTPANEEAYWRARAYVEAYVPGETGTGLIFVGPPGTGKTHLAAATLREIVRTRGERDF 153 Query: 91 TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTF 147 +K R+ ++L+D+ ++ QL+ +IN ++ + ++TA Sbjct: 154 AWVHVPSKLDRLEAYAERRLLVLDDLTGTTWSPQAQRQLYVLINRRYEAELPTIVTANMG 213 Query: 148 PVSWGVCL--PDLCSRLK 163 L DL RL Sbjct: 214 KERME-RLFGADLVDRLN 230 >gi|167768575|ref|ZP_02440628.1| hypothetical protein CLOSS21_03134 [Clostridium sp. SS2/1] gi|317497939|ref|ZP_07956247.1| ATPase [Lachnospiraceae bacterium 5_1_63FAA] gi|167710099|gb|EDS20678.1| hypothetical protein CLOSS21_03134 [Clostridium sp. SS2/1] gi|291560535|emb|CBL39335.1| ATPase related to the helicase subunit of the Holliday junction resolvase [butyrate-producing bacterium SSC/2] gi|316894772|gb|EFV16946.1| ATPase [Lachnospiraceae bacterium 5_1_63FAA] Length = 438 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 61/170 (35%), Gaps = 24/170 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +I GP G+GK+ LA + ++ +++ A + + E + + T L Sbjct: 55 IIFYGPPGTGKTTLAKVIANTTKANFVQMNATTSGKKDMQEAVADAKESLGMYQKK-TIL 113 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N + + +L+ A T + V L SR + V ++ D Sbjct: 114 FIDEIHRFNKAQQDYLLPFVEDGTIILIGATTENPYFEVNQA-LISR---SNVFELHSLD 169 Query: 175 DDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 + ++K+IV+ D I ++ E A ++ Sbjct: 170 KEDIKKLIVRAITDDEKGMGIYGATITDDALDFLSDMAEGDARSALNAIE 219 >gi|331004982|ref|ZP_08328392.1| putative ATPase associated with chromosome architecture [gamma proteobacterium IMCC1989] gi|330421224|gb|EGG95480.1| putative ATPase associated with chromosome architecture [gamma proteobacterium IMCC1989] Length = 466 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 67/194 (34%), Gaps = 31/194 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA + + + T S + + I L + T Sbjct: 68 MILWGPPGVGKTSLARMLAHLIDAEYTSLSAVLAGVKDIRQAVATAQLTQ---QTSGRRT 124 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + + + A T S+ + L SR V + Sbjct: 125 LLFVDEVHRFNKAQQDAFLPYVENGTITFIGATTENPSFELNNA-LLSR---CRVYVLRR 180 Query: 173 PDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 DD + +++ + D +++ + + + A + ++ ++ + Sbjct: 181 LGDDDIIQLLHRALNDSDKGLGQKELHCSEDVINILASAAN---GDARRALNLLEIASDL 237 Query: 226 RGMGITRSLAAEVL 239 IT + AE+L Sbjct: 238 AEQNITLEIVAEIL 251 >gi|290968723|ref|ZP_06560261.1| recombination factor protein RarA [Megasphaera genomosp. type_1 str. 28L] gi|290781376|gb|EFD93966.1| recombination factor protein RarA [Megasphaera genomosp. type_1 str. 28L] Length = 439 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 77/198 (38%), Gaps = 33/198 (16%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIA--------------KSLDSILIDTRKP 110 ++ GPSG GK+ LA++ + +++ + A D + R Sbjct: 56 PSLLFYGPSGVGKTTLAHVIAAETKCKFVNLNAVMSGTADLRRVIETAKQDIQIYQKRTL 115 Query: 111 VLLEDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168 V +++I + + + H+ N + +L+ A T + V P L SRL+ V+ Sbjct: 116 VFIDEIHRFNKSQQDILLPHVEN-----GTIILIGATTENPYFEVNRP-LLSRLR---VI 166 Query: 169 KISLPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 + + V+ + D ++I + + + + A L++++ Sbjct: 167 VLPPLSVQAVVAVLRRALRDEEKGLGQQRITAADETLQSLARLADCDARMALNLLEQV-C 225 Query: 222 LALSRGMGITRSLAAEVL 239 L G IT S A+V+ Sbjct: 226 ALLPAGGRITSSYLAKVV 243 >gi|159896622|ref|YP_001542869.1| IstB ATP binding domain-containing protein [Herpetosiphon aurantiacus ATCC 23779] gi|159889661|gb|ABX02741.1| IstB domain protein ATP-binding protein [Herpetosiphon aurantiacus ATCC 23779] Length = 266 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 51/142 (35%), Gaps = 31/142 (21%) Query: 45 VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL 104 V+ + +A + W ++LVG G GK+ LA ++++ + I + +L Sbjct: 104 VNESFARAKAFAQAPKGW----LLLVGGYGCGKTHLAAAIANEAVRREYQTIFMVVPDLL 159 Query: 105 ---------------------IDTRKPVLLEDIDL---LDFNDTQLFHIINSIHQYDSSL 140 I + + ++L+D+ + +LF IIN + Sbjct: 160 DYLRSTFGPNSEVAYDERFDKIRSIQLLVLDDLGAESSTAWAREKLFQIINHRYNNHLPT 219 Query: 141 LMTARTFPVSWGVCLPDLCSRL 162 + T P + SRL Sbjct: 220 VFTTNV---DLDKLDPRIASRL 238 >gi|326433452|gb|EGD79022.1| cell division cycle protein 48 [Salpingoeca sp. ATCC 50818] Length = 805 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 39/208 (18%), Positives = 78/208 (37%), Gaps = 54/208 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ LA ++++ + F SN+ K+ + + Sbjct: 234 PPRGILLYGPPGTGKTLLARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 293 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + +++ID + QL +++ + Q ++M A P S Sbjct: 294 APAIIFIDEIDAIAPKREKTQGEVERRTVSQLLTLMDGLKQRAHVVVMAATNRPNSIDPA 353 Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198 + +PD RL+ + L DD LE+V + ++ LA Sbjct: 354 LRRFGRFDREVDIGIPDATGRLEILRIHTKNMKLSDDVDLEQV----AKETHGYVGADLA 409 Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSR 226 A S +++ +++D + L Sbjct: 410 ALC------SEAALQQIRERIDVIDLEE 431 Score = 38.6 bits (89), Expect = 0.72, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 3/81 (3%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL-DF 121 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 507 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAA 566 Query: 122 NDTQLF--HIINSIHQYDSSL 140 LF + + SL Sbjct: 567 APCVLFFDELDSIAKARGGSL 587 >gi|209880048|ref|XP_002141464.1| transitional endoplasmic reticulum ATPase protein [Cryptosporidium muris RN66] gi|209557070|gb|EEA07115.1| transitional endoplasmic reticulum ATPase protein, putative [Cryptosporidium muris RN66] Length = 802 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 64/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R V+L GP GSGK+ +A ++++ + F N+ ++ + + Sbjct: 243 PPRGVLLYGPPGSGKTLIARAVANETGAFFFLINGPEVMSKMAGEAEGNLRRAFEEAEKN 302 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + +++ A P S Sbjct: 303 SPAIIFIDEIDSIAPKREKTHGEVERRVVSQLLTLMDGLKGRGQVVVIAATNRPNSIDAA 362 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L R + + I +PDD+ ++I R + + K + Sbjct: 363 LR----RFGRFDREIDIGVPDDNGRLEII--RIHTRNMKLAKDV 400 Score = 39.7 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 24/57 (42%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA + + + S L ++ + + E D Sbjct: 516 PSRGVLFYGPPGCGKTLLAKAVASECSANFISVKGPELLTLWFGESEANVREVFDKA 572 >gi|18129319|emb|CAC83484.1| DnaA protein [Wolbachia endosymbiont of Dirofilaria immitis] Length = 150 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 40/101 (39%), Gaps = 1/101 (0%) Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 P + SRL V I+ + ++ I++ + ++ + + Sbjct: 1 RSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQAKVEQMNIYVPDDVLEFLARNI 60 Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + ++ E ++K+ + +L G +T A+E L + + + Sbjct: 61 KSNIRELEGALNKVAHTSLI-GRSMTVESASETLADLLRSN 100 >gi|300120988|emb|CBK21370.2| unnamed protein product [Blastocystis hominis] Length = 475 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 43/206 (20%), Positives = 80/206 (38%), Gaps = 32/206 (15%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRS------------TRFSNIAKSLDSILIDTRKP 110 P IL GPSG GK+ +A I S ++ ++ D + T+ P Sbjct: 30 PPPSFILCGPSGCGKTTVAYIISKQTTCPFKSLSCCTSDLKEVRSVLDECDKVFFSTKTP 89 Query: 111 --VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168 + L++I N +F + +L+ A T S+ + +P L SR V Sbjct: 90 TILFLDEIHRFSKNQQDVFLPY---VESGKLVLIGATTENPSFSI-IPALLSR---CRVF 142 Query: 169 KIS-LPDDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQRME-RSLVFAEKLVDKMDN-- 221 + L D L + + D R++ + +++ + RS A + ++ +++ Sbjct: 143 PLQLLSSDALLHVLEHALATDSILRELQVSVD--DALLREISLRSDGDARRALNSLESCV 200 Query: 222 --LALSRGMGITRSLAAEVLKETQQC 245 + S + SL VL E +Q Sbjct: 201 LFASHSPSKHASPSLLRSVLCEDKQP 226 >gi|269986895|gb|EEZ93171.1| Microtubule-severing ATPase [Candidatus Parvarchaeum acidiphilum ARMAN-4] Length = 763 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTR-- 108 P R V+L GP G+GK+ LA +D+S + + + K L I D Sbjct: 246 PPRGVLLYGPPGTGKTLLARAVADESEAHFITINGPEVMSKWVGDAEKKLREIFDDAEKN 305 Query: 109 --KPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + +++ A P + Sbjct: 306 APSIIFIDEIDAIATKREESIGEVEHRVVSQLLTLMDGLRSRGKVIVIAATNRPNAIDPA 365 Query: 155 L 155 L Sbjct: 366 L 366 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 17/74 (22%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--------------VILVGPSGSGKSCL 80 + D+ +EQ + WP + ++L GP G+GK+ L Sbjct: 481 RPSVGWADV---GGLEQVKAQLKEAIDWPLKHPDSFRRVGITPPKGILLYGPPGTGKTLL 537 Query: 81 ANIWSDKSRSTRFS 94 A + ++ S + Sbjct: 538 ARAVAHETESNFIA 551 >gi|194336934|ref|YP_002018728.1| AAA ATPase central domain protein [Pelodictyon phaeoclathratiforme BU-1] gi|194309411|gb|ACF44111.1| AAA ATPase central domain protein [Pelodictyon phaeoclathratiforme BU-1] Length = 447 Score = 50.5 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 39/199 (19%), Positives = 74/199 (37%), Gaps = 30/199 (15%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKP-----------V 111 +I GP GSGK+ LA I + + S I + + + + Sbjct: 62 PSMIFWGPPGSGKTTLAEICATSLNYSFEQLSAIDSGVKEVRKALEQAEKSRRSGRRTIL 121 Query: 112 LLEDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 +++I + L H I + +L+ A T S+ V L SR++ V + Sbjct: 122 FIDEIHRFNKAQQDTLLHAI----EQGLIVLIGATTENPSFEVNGA-LLSRMQ---VYIL 173 Query: 171 SLPDDDFLEKVIVKMFAD----RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL-ALS 225 + +E VI + + R + I+ +++Q S A K ++ ++ +L Sbjct: 174 KPLGSEEIELVIRRALKEDRLLRDLSIEITDLDFLLQF---SGGDARKALNAVEAAISLF 230 Query: 226 RGMGITRSLAAEVLKETQQ 244 L E+L+ Q Sbjct: 231 PEGASEMVLTRELLERALQ 249 >gi|170783852|gb|ACB37399.1| DnaA [Spiroplasma mirum] Length = 150 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 44/104 (42%), Gaps = 5/104 (4%) Query: 106 DTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 D +L++DI LL + F+I NS + + +++T+ +P G + SR Sbjct: 40 DKFDCLLIDDIQLLAKRNKTNELFFYIFNSFIEKNKQIVITSDKYPDDLGGFEARIISRF 99 Query: 163 KAATVVKISLPD-DDFLEKVIVKMFADRQIFI-DKKLAAYIVQR 204 + + PD + ++ + K+ + + ++ +I Sbjct: 100 SYGLSIGLDFPDFETAIKILEQKLKQQNNLALFSEESLEFIALN 143 >gi|320095686|ref|ZP_08027342.1| replication-associated recombination protein A [Actinomyces sp. oral taxon 178 str. F0338] gi|319977407|gb|EFW09094.1| replication-associated recombination protein A [Actinomyces sp. oral taxon 178 str. F0338] Length = 456 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 69/176 (39%), Gaps = 29/176 (16%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 +I GP G GK+ LA + + ++ + FS + + I R+ D Sbjct: 54 PSMIFWGPPGVGKTTLARVIARRTCASFIDFSAVTSGIKEIREVMRQA----DAQASTGR 109 Query: 123 DTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 T +F H N + S +L+ A T S+ V L SR V + Sbjct: 110 RTIVFVDEIHRFNKAQQDAFLPFVEKGSIILIGATTENPSFEVNSA-LLSR---CKVFVL 165 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD-NLALS 225 + +D + ++ + AD + F ++ + R+E L+ A + D +ALS Sbjct: 166 NALAEDDITALLRRALADPRGFGEQDV------RIEDDLLRAIAVFANGDARVALS 215 >gi|258511770|ref|YP_003185204.1| DNA replication protein-like protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478496|gb|ACV58815.1| DNA replication protein-like protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 306 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 55/158 (34%), Gaps = 33/158 (20%) Query: 50 EQAVRLIDSW--PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107 A +W P + L GP G GK+ L + + ++ DS+ Sbjct: 139 RYAQEFARTWSPQEAPRAGLYLFGPPGVGKTHLMFAVFRELQRRGVPSLVVRSDSLFDHM 198 Query: 108 RKPVLL-EDIDL----------LDFND-----------TQLFHIINSIHQYDSSLLMTAR 145 R + ED++ L ++ +LF +IN + S T+ Sbjct: 199 RHVIAAGEDLEPFLETLSTVPVLGIDEFAQERANEFSMEKLFRVINYRFHHKLSTWFTSN 258 Query: 146 -TFPVSWGVCLPD-------LCSR-LKAATVVKISLPD 174 + P ++ + D L SR + +VK+ PD Sbjct: 259 FSPPDAYRRGVDDLLDTVAPLRSRVMSMCILVKMDGPD 296 >gi|255569991|ref|XP_002525958.1| Cell division protease ftsH, putative [Ricinus communis] gi|223534690|gb|EEF36382.1| Cell division protease ftsH, putative [Ricinus communis] Length = 636 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 39/214 (18%), Positives = 78/214 (36%), Gaps = 44/214 (20%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110 R V+LVGP G+GK+ LA + ++ FS A + + Sbjct: 382 RGVLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFVELFVGRGAARIRDLFKVARKSAP 441 Query: 111 --VLLEDIDLLDF-------ND-----TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL- 155 + ++++D + ++ QL ++ +++ A P + L Sbjct: 442 SIIFIDELDAVGGKRGRSFNDERDQTLNQLLTEMDGFESDMKVVVIAATNRPEALDQALC 501 Query: 156 -PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK--KLAAYIVQRMERSLVFA 212 P SR V + PD++ EK++ R + +++ L +V + V A Sbjct: 502 RPGRFSR-----KVLVGEPDEEGREKILSVHL--RGVPLEEDTDLICNLVASLTPGFVGA 554 Query: 213 EKLVDKMDNLALSRGMG----ITRSLAAEVLKET 242 L + ++ AL +TR E ++ Sbjct: 555 -DLANIVNEAALLAARRGGETVTREDIMEAIERA 587 >gi|108803881|ref|YP_643818.1| recombination factor protein RarA [Rubrobacter xylanophilus DSM 9941] gi|108765124|gb|ABG04006.1| Recombination protein MgsA [Rubrobacter xylanophilus DSM 9941] Length = 429 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 40/194 (20%), Positives = 73/194 (37%), Gaps = 28/194 (14%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 VIL GP G+GK+ LA + + A + + E + + T Sbjct: 53 GSVILWGPPGTGKTTLARVLAASVEEEFVPLSAVTSGVRDLRAALDGARERL-KYEGRGT 111 Query: 125 QLF----HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N Q +LL + A T S+ V P L SR + V+++ Sbjct: 112 LLFVDEVHRFNKAQQD--ALLPALEEGLVDFIGATTENPSFEVTAP-LLSR---SRVLRL 165 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG--- 227 LE ++ + ++ + I + Y+++ A ++++ ++ A R Sbjct: 166 RPLSKGDLEALLERGLSELGVGISGEARDYLLRLAG---GDARRMLNALEVAASGRREVG 222 Query: 228 -MGITRSLAAEVLK 240 I R+L L+ Sbjct: 223 VAEIERALGQRALR 236 >gi|254725910|ref|ZP_05187692.1| hypothetical protein BantA1_26221 [Bacillus anthracis str. A1055] Length = 232 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 51/125 (40%), Gaps = 24/125 (19%) Query: 52 AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------- 104 AV+ + ++ W ++L G G+GK+ LA ++ + + +S+ +L Sbjct: 68 AVKYVKTFKEWNGESLMLWGEPGNGKTHLAAAIVNELSKKGYIVVFQSVPELLQRIRSTF 127 Query: 105 --------------IDTRKPVLLEDIDL---LDFNDTQLFHIINSIHQYDSSLLMTARTF 147 + ++L+DI ++ + +LF+II+ ++ + L T+ Sbjct: 128 NSENKENETQIMRALLECDLLILDDIGAEKTTEWVEEKLFNIIDGRYRKELPTLYTSNLE 187 Query: 148 PVSWG 152 P Sbjct: 188 PKELK 192 >gi|228936973|ref|ZP_04099715.1| Prophage LambdaBa02, DNA replication protein DnaC [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228822688|gb|EEM68578.1| Prophage LambdaBa02, DNA replication protein DnaC [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 196 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 51/125 (40%), Gaps = 24/125 (19%) Query: 52 AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------- 104 AV+ + ++ W ++L G G+GK+ LA ++ + + +S+ +L Sbjct: 32 AVKYVKTFKEWNGESLMLWGEPGNGKTHLAAAIVNELSKKGYIVVFQSVPELLQRIRSTF 91 Query: 105 --------------IDTRKPVLLEDIDL---LDFNDTQLFHIINSIHQYDSSLLMTARTF 147 + ++L+DI ++ + +LF+II+ ++ + L T+ Sbjct: 92 NSENKENETQIMRALLECDLLILDDIGAEKTTEWVEEKLFNIIDGRYRKELPTLYTSNLE 151 Query: 148 PVSWG 152 P Sbjct: 152 PKELK 156 >gi|30263982|ref|NP_846359.1| hypothetical protein BA_4120 [Bacillus anthracis str. Ames] gi|47529415|ref|YP_020764.1| hypothetical protein GBAA_4120 [Bacillus anthracis str. 'Ames Ancestor'] gi|49186825|ref|YP_030077.1| hypothetical protein BAS3827 [Bacillus anthracis str. Sterne] gi|227813113|ref|YP_002813122.1| putative prophage LambdaBa02, DNA replication protein DnaC [Bacillus anthracis str. CDC 684] gi|254683677|ref|ZP_05147537.1| hypothetical protein BantC_07490 [Bacillus anthracis str. CNEVA-9066] gi|254721513|ref|ZP_05183302.1| hypothetical protein BantA1_03490 [Bacillus anthracis str. A1055] gi|254736021|ref|ZP_05193727.1| hypothetical protein BantWNA_12761 [Bacillus anthracis str. Western North America USA6153] gi|254743913|ref|ZP_05201596.1| hypothetical protein BantKB_23430 [Bacillus anthracis str. Kruger B] gi|254754309|ref|ZP_05206344.1| hypothetical protein BantV_17650 [Bacillus anthracis str. Vollum] gi|254758000|ref|ZP_05210027.1| hypothetical protein BantA9_06820 [Bacillus anthracis str. Australia 94] gi|30258626|gb|AAP27845.1| putative prophage LambdaBa02, DNA replication protein DnaC [Bacillus anthracis str. Ames] gi|47504563|gb|AAT33239.1| putative prophage LambdaBa02, DNA replication protein DnaC [Bacillus anthracis str. 'Ames Ancestor'] gi|49180752|gb|AAT56128.1| prophage LambdaBa02, DNA replication protein DnaC, putative [Bacillus anthracis str. Sterne] gi|227005851|gb|ACP15594.1| putative prophage LambdaBa02, DNA replication protein DnaC [Bacillus anthracis str. CDC 684] Length = 267 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 51/125 (40%), Gaps = 24/125 (19%) Query: 52 AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------- 104 AV+ + ++ W ++L G G+GK+ LA ++ + + +S+ +L Sbjct: 103 AVKYVKTFKEWNGESLMLWGEPGNGKTHLAAAIVNELSKKGYIVVFQSVPELLQRIRSTF 162 Query: 105 --------------IDTRKPVLLEDIDL---LDFNDTQLFHIINSIHQYDSSLLMTARTF 147 + ++L+DI ++ + +LF+II+ ++ + L T+ Sbjct: 163 NSENKENETQIMRALLECDLLILDDIGAEKTTEWVEEKLFNIIDGRYRKELPTLYTSNLE 222 Query: 148 PVSWG 152 P Sbjct: 223 PKELK 227 >gi|30260604|ref|NP_842981.1| hypothetical protein BA_0439 [Bacillus anthracis str. Ames] gi|47525714|ref|YP_017063.1| hypothetical protein GBAA_0439 [Bacillus anthracis str. 'Ames Ancestor'] gi|49183453|ref|YP_026705.1| hypothetical protein BAS0425 [Bacillus anthracis str. Sterne] gi|165870647|ref|ZP_02215300.1| putative prophage LambdaBa02, DNA replication protein DnaC [Bacillus anthracis str. A0488] gi|170688562|ref|ZP_02879768.1| putative prophage LambdaBa02, DNA replication protein DnaC [Bacillus anthracis str. A0465] gi|170707080|ref|ZP_02897536.1| putative prophage LambdaBa02, DNA replication protein DnaC [Bacillus anthracis str. A0389] gi|227816684|ref|YP_002816693.1| putative prophage LambdaBa02, DNA replication protein DnaC [Bacillus anthracis str. CDC 684] gi|229601670|ref|YP_002865051.1| putative prophage LambdaBa02, DNA replication protein DnaC [Bacillus anthracis str. A0248] gi|254686830|ref|ZP_05150688.1| hypothetical protein BantC_23720 [Bacillus anthracis str. CNEVA-9066] gi|254724905|ref|ZP_05186688.1| hypothetical protein BantA1_20959 [Bacillus anthracis str. A1055] gi|254756210|ref|ZP_05208239.1| hypothetical protein BantV_27421 [Bacillus anthracis str. Vollum] gi|254762029|ref|ZP_05213878.1| hypothetical protein BantA9_26421 [Bacillus anthracis str. Australia 94] gi|30253972|gb|AAP24467.1| putative prophage LambdaBa04, DNA replication protein DnaC [Bacillus phage lambda Ba01] gi|47500862|gb|AAT29538.1| putative prophage LambdaBa02, DNA replication protein DnaC [Bacillus anthracis str. 'Ames Ancestor'] gi|49177380|gb|AAT52756.1| prophage LambdaBa04, DNA replication protein DnaC, putative [Bacillus anthracis str. Sterne] gi|164713481|gb|EDR19005.1| putative prophage LambdaBa02, DNA replication protein DnaC [Bacillus anthracis str. A0488] gi|170127858|gb|EDS96729.1| putative prophage LambdaBa02, DNA replication protein DnaC [Bacillus anthracis str. A0389] gi|170667422|gb|EDT18179.1| putative prophage LambdaBa02, DNA replication protein DnaC [Bacillus anthracis str. A0465] gi|227007837|gb|ACP17580.1| putative prophage LambdaBa02, DNA replication protein DnaC [Bacillus anthracis str. CDC 684] gi|229266078|gb|ACQ47715.1| putative prophage LambdaBa02, DNA replication protein DnaC [Bacillus anthracis str. A0248] Length = 267 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 51/125 (40%), Gaps = 24/125 (19%) Query: 52 AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------- 104 AV+ + ++ W ++L G G+GK+ LA ++ + + +S+ +L Sbjct: 103 AVKYVKTFKEWNGESLMLWGEPGNGKTHLAAAIVNELSKKGYIVVFQSVPELLQRIRSTF 162 Query: 105 --------------IDTRKPVLLEDIDL---LDFNDTQLFHIINSIHQYDSSLLMTARTF 147 + ++L+DI ++ + +LF+II+ ++ + L T+ Sbjct: 163 NSENKENETQIMRALLECDLLILDDIGAEKTTEWVEEKLFNIIDGRYRKELPTLYTSNLE 222 Query: 148 PVSWG 152 P Sbjct: 223 PKELK 227 >gi|65321309|ref|ZP_00394268.1| COG1484: DNA replication protein [Bacillus anthracis str. A2012] gi|165872127|ref|ZP_02216766.1| putative prophage LambdaBa02, DNA replication protein DnaC [Bacillus anthracis str. A0488] gi|167633650|ref|ZP_02391974.1| putative prophage LambdaBa02, DNA replication protein DnaC [Bacillus anthracis str. A0442] gi|167641035|ref|ZP_02399292.1| putative prophage LambdaBa02, DNA replication protein DnaC [Bacillus anthracis str. A0193] gi|170688793|ref|ZP_02879997.1| putative prophage LambdaBa02, DNA replication protein DnaC [Bacillus anthracis str. A0465] gi|170705697|ref|ZP_02896160.1| putative prophage LambdaBa02, DNA replication protein DnaC [Bacillus anthracis str. A0389] gi|177654327|ref|ZP_02936256.1| putative prophage LambdaBa02, DNA replication protein DnaC [Bacillus anthracis str. A0174] gi|190566106|ref|ZP_03019025.1| putative prophage LambdaBa02, DNA replication protein DnaC [Bacillus anthracis Tsiankovskii-I] gi|229603463|ref|YP_002868213.1| putative prophage LambdaBa02, DNA replication protein DnaC [Bacillus anthracis str. A0248] gi|164712074|gb|EDR17612.1| putative prophage LambdaBa02, DNA replication protein DnaC [Bacillus anthracis str. A0488] gi|167511085|gb|EDR86474.1| putative prophage LambdaBa02, DNA replication protein DnaC [Bacillus anthracis str. A0193] gi|167531056|gb|EDR93743.1| putative prophage LambdaBa02, DNA replication protein DnaC [Bacillus anthracis str. A0442] gi|170129237|gb|EDS98101.1| putative prophage LambdaBa02, DNA replication protein DnaC [Bacillus anthracis str. A0389] gi|170667309|gb|EDT18068.1| putative prophage LambdaBa02, DNA replication protein DnaC [Bacillus anthracis str. A0465] gi|172080817|gb|EDT65898.1| putative prophage LambdaBa02, DNA replication protein DnaC [Bacillus anthracis str. A0174] gi|190563025|gb|EDV16991.1| putative prophage LambdaBa02, DNA replication protein DnaC [Bacillus anthracis Tsiankovskii-I] gi|229267871|gb|ACQ49508.1| putative prophage LambdaBa02, DNA replication protein DnaC [Bacillus anthracis str. A0248] Length = 263 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 51/125 (40%), Gaps = 24/125 (19%) Query: 52 AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------- 104 AV+ + ++ W ++L G G+GK+ LA ++ + + +S+ +L Sbjct: 99 AVKYVKTFKEWNGESLMLWGEPGNGKTHLAAAIVNELSKKGYIVVFQSVPELLQRIRSTF 158 Query: 105 --------------IDTRKPVLLEDIDL---LDFNDTQLFHIINSIHQYDSSLLMTARTF 147 + ++L+DI ++ + +LF+II+ ++ + L T+ Sbjct: 159 NSENKENETQIMRALLECDLLILDDIGAEKTTEWVEEKLFNIIDGRYRKELPTLYTSNLE 218 Query: 148 PVSWG 152 P Sbjct: 219 PKELK 223 >gi|65317867|ref|ZP_00390826.1| COG1484: DNA replication protein [Bacillus anthracis str. A2012] gi|167634728|ref|ZP_02393047.1| putative prophage LambdaBa02, DNA replication protein DnaC [Bacillus anthracis str. A0442] gi|167640846|ref|ZP_02399105.1| putative prophage LambdaBa02, DNA replication protein DnaC [Bacillus anthracis str. A0193] gi|177654982|ref|ZP_02936676.1| putative prophage LambdaBa02, DNA replication protein DnaC [Bacillus anthracis str. A0174] gi|190567634|ref|ZP_03020547.1| putative prophage LambdaBa02, DNA replication protein DnaC [Bacillus anthracis Tsiankovskii-I] gi|167511240|gb|EDR86627.1| putative prophage LambdaBa02, DNA replication protein DnaC [Bacillus anthracis str. A0193] gi|167529802|gb|EDR92550.1| putative prophage LambdaBa02, DNA replication protein DnaC [Bacillus anthracis str. A0442] gi|172080367|gb|EDT65455.1| putative prophage LambdaBa02, DNA replication protein DnaC [Bacillus anthracis str. A0174] gi|190561421|gb|EDV15393.1| putative prophage LambdaBa02, DNA replication protein DnaC [Bacillus anthracis Tsiankovskii-I] Length = 263 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 51/125 (40%), Gaps = 24/125 (19%) Query: 52 AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------- 104 AV+ + ++ W ++L G G+GK+ LA ++ + + +S+ +L Sbjct: 99 AVKYVKTFKEWNGESLMLWGEPGNGKTHLAAAIVNELSKKGYIVVFQSVPELLQRIRSTF 158 Query: 105 --------------IDTRKPVLLEDIDL---LDFNDTQLFHIINSIHQYDSSLLMTARTF 147 + ++L+DI ++ + +LF+II+ ++ + L T+ Sbjct: 159 NSENKENETQIMRALLECDLLILDDIGAEKTTEWVEEKLFNIIDGRYRKELPTLYTSNLE 218 Query: 148 PVSWG 152 P Sbjct: 219 PKELK 223 >gi|332981519|ref|YP_004462960.1| AAA ATPase central domain-containing protein [Mahella australiensis 50-1 BON] gi|332699197|gb|AEE96138.1| AAA ATPase central domain protein [Mahella australiensis 50-1 BON] Length = 444 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 86/235 (36%), Gaps = 49/235 (20%) Query: 23 NKEEQLFFSFPRCLGISR---DDL-----LVHSAIEQAVRLIDSWPSWPSRVVILVGPSG 74 N+ +QL P + ++ ++ R I + VI GP G Sbjct: 7 NRNKQLKKEAPLAERMRPRTLEEFVGQEHIIAPG-RMLYRAIKADR---LSSVIFYGPPG 62 Query: 75 SGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL---LDFNDTQLF-- 127 +GK+ LA + ++ KS + S + + + L+++ + T LF Sbjct: 63 TGKTTLARVIANTTKSHFEQLSAVTAGVADVRR------LIDEAKQRLGMYGQRTILFID 116 Query: 128 --HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 H N + + +L+ A T + V L SR +TV ++ + Sbjct: 117 EIHRFNKAQQDALLPHVEAGTIILIGATTENPYFEVNSA-LLSR---STVFELYPLKEKH 172 Query: 178 LEKVIVKMFA--DRQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 L++++ + A DR + I +IV + A +++ ++ L+ Sbjct: 173 LKEILKRALADKDRGLGNYAIEITDDAIDHIVNMAD---GDARSVLNALEIAFLT 224 >gi|330683925|gb|EGG95693.1| recombination factor protein RarA [Staphylococcus epidermidis VCU121] Length = 423 Score = 50.1 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 35/200 (17%), Positives = 72/200 (36%), Gaps = 39/200 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117 +I GP G GK+ +A + ++ + ++ +D + + +LL++I Sbjct: 43 MIFYGPPGIGKTSIAKAIAGSTQYKFRQLNAVTNTKKDMQMVVDEAKMSGQVILLLDEIH 102 Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 L D L H+ N +L+ T + P + SR A + ++ Sbjct: 103 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELFPL 151 Query: 174 DDDFLEKVIVKMF--ADRQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 D+D + + + DR + +D Y + S ++ ++ LS Sbjct: 152 DNDDIRLALNRALEDEDRGLNAYSPKVDDDAMTYFSTQ---SQGDVRSALNALELAVLSA 208 Query: 227 -----GMGITRSLAAEVLKE 241 IT A + L++ Sbjct: 209 SEEDGQRHITLQDAKDCLQK 228 >gi|255019842|ref|ZP_05291918.1| ATPase, AAA family [Acidithiobacillus caldus ATCC 51756] gi|254970771|gb|EET28257.1| ATPase, AAA family [Acidithiobacillus caldus ATCC 51756] Length = 437 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 63/175 (36%), Gaps = 28/175 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++ GP G GK+ LA++ + + + + A + V E T L Sbjct: 46 LVFWGPPGVGKTTLAHLLAAEQGAEVLTLSAVDSGVRELRAAAAVATER--RGRGESTVL 103 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N + + L+ A T S+ + L SR++ + + Sbjct: 104 FIDEIHRFNKTQQDALLPHLEEGTLTLIGATTENPSFALVGA-LLSRIR---IYVLEPLG 159 Query: 175 DDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 + L ++ + DR+ + + A ++ + + A +L++ +D Sbjct: 160 QEALAAILERSLHDRERGLGDLAVELPDSARAQLLAQAD---GDARRLLNILDLA 211 >gi|312137192|ref|YP_004004529.1| ATPase AAA [Methanothermus fervidus DSM 2088] gi|311224911|gb|ADP77767.1| AAA family ATPase, CDC48 subfamily [Methanothermus fervidus DSM 2088] Length = 732 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 62/163 (38%), Gaps = 33/163 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109 P + V+L GP G+GK+ LA +++S + + + L I + + Sbjct: 237 PPKGVLLHGPPGTGKTLLAKAVANESDAHFIAINGPEIMSKYVGGSEERLREIFKEAEEN 296 Query: 110 ---PVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + +++ A P + Sbjct: 297 APSIIFIDEIDAIAPKREEVTGEVERRIVAQLLTLMDGLKARGQVIVIGATNRPDALD-- 354 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L + ++I +PD D ++++ R + + + Sbjct: 355 -PALRRPGRFDREIEIGVPDRDERKEILE--IHTRGMPLADDV 394 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 20/32 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + V+L GP G+GK+ LA +++S + + Sbjct: 509 PPKGVLLYGPPGTGKTLLAKAVANESGANFIA 540 >gi|291245127|ref|XP_002742444.1| PREDICTED: Werner helicase interacting protein-like [Saccoglossus kowalevskii] Length = 633 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 40/205 (19%), Positives = 69/205 (33%), Gaps = 35/205 (17%) Query: 5 KEDYSFF--VPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLL----VHSAIEQAVRLIDS 58 E S F + + + K + + S DD + V LI++ Sbjct: 178 TEGQSIFAIMGQNARGNAEKKSADFAPLAEKMRPS-SLDDYVGQDKVIGTNTMLRSLIEA 236 Query: 59 WPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL 118 +IL GP G GK+ LA I + S + + SN + T + ++ Sbjct: 237 ---NDVPSMILWGPPGCGKTTLARIVA--SNAKKNSNSRLRFVQLSATTSNVSEVREVIK 291 Query: 119 LDFNDTQLF-----------HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLC 159 + N+ +F H N + + + L+ A T S+ V L Sbjct: 292 IAQNEQTMFKRKTILFIDEIHRFNKLQQDTFLMHIENGTITLIGATTQNPSFQVNSA-LL 350 Query: 160 SRLKAATVVKISLPDDDFLEKVIVK 184 SR VV + +E ++ K Sbjct: 351 SR---CKVVVLEKLSIQSMENILTK 372 >gi|297568672|ref|YP_003690016.1| AAA ATPase central domain protein [Desulfurivibrio alkaliphilus AHT2] gi|296924587|gb|ADH85397.1| AAA ATPase central domain protein [Desulfurivibrio alkaliphilus AHT2] Length = 461 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 73/184 (39%), Gaps = 32/184 (17%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRF-------------SNIAKSLDSILIDTRKPV 111 ++L GP GSGK+ LA I + S + + +S R V Sbjct: 57 PSLLLWGPPGSGKTTLARILAGGSGADFVFFSAVLSGVKEIREIVERSRRIRAESGRGSV 116 Query: 112 L-LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 L +++I + + F + L+ A T S+ V P L SR V+ + Sbjct: 117 LFVDEIHRFNKSQQDAFLPH---VEAGLITLIGATTENPSFHVIAP-LLSR---CRVIVL 169 Query: 171 SLPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMD-NL 222 + + L+ ++ + +D R + I ++ A +++ + A L++ ++ Sbjct: 170 NPLAAEDLQIILERALSDEERGLGKLRLKISREAADHLISIAD---GDARSLLNSLEIAA 226 Query: 223 ALSR 226 AL++ Sbjct: 227 ALAQ 230 >gi|257063510|ref|YP_003143182.1| Recombination protein MgsA [Slackia heliotrinireducens DSM 20476] gi|256791163|gb|ACV21833.1| Recombination protein MgsA [Slackia heliotrinireducens DSM 20476] Length = 446 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 74/182 (40%), Gaps = 32/182 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKP------------VL 112 +IL GP+G+GK+ +A+I ++ +R+ S I ++ + + + Sbjct: 56 IILFGPAGTGKTSIAHIIAETTRAIFVEVSAIGGTVSDLRREIAAAEKRLYATGRRTILF 115 Query: 113 LEDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++I + L H + + +L+ A T + V L SR + VV++ Sbjct: 116 VDEIHRFNRSQQDALLH----AVENRTVVLIGATTENPFFEVNSA-LISR---SRVVELH 167 Query: 172 LPDDDFLEKVIVKMFAD-RQIF----IDKKLAAYIVQRMERSLVFAEKLVDKMDNLA-LS 225 DD + +V+ AD R + + A IV S A + ++ + L+ Sbjct: 168 SLSDDDIRQVLDAALADERGLKGEFDLLPDAAEAIVT---LSGGDARGALTTLELASGLA 224 Query: 226 RG 227 R Sbjct: 225 RQ 226 >gi|254420530|ref|ZP_05034254.1| ATPase, AAA family protein [Brevundimonas sp. BAL3] gi|196186707|gb|EDX81683.1| ATPase, AAA family protein [Brevundimonas sp. BAL3] Length = 442 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 53/148 (35%), Gaps = 24/148 (16%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G+GK+ +A + + + S A S + D +K + T Sbjct: 52 GSMILWGPPGTGKTTIARLLAQAAGYEYQSISAVF--SGVADLKKAFEAARMRRAAGQST 109 Query: 125 QLF----HIINSIHQYD---------SSLLMTARTFPV-SWGVCLPDLCSRLKAATVVKI 170 LF H N Q +L+ P L SR + V + Sbjct: 110 LLFVDEIHRFNRAQQDGFLPFVEAGVVTLVGATTENPSFELNGA---LLSR---SQVYVL 163 Query: 171 SLPDDDFLEKVIVKMFA--DRQIFIDKK 196 DD L++++ + A +R + + + Sbjct: 164 KRLDDAALDQLLSRAEAHMERGLPLSPE 191 >gi|307299313|ref|ZP_07579114.1| AAA ATPase central domain protein [Thermotogales bacterium mesG1.Ag.4.2] gi|306915109|gb|EFN45495.1| AAA ATPase central domain protein [Thermotogales bacterium mesG1.Ag.4.2] Length = 437 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 37/195 (18%), Positives = 72/195 (36%), Gaps = 25/195 (12%) Query: 67 VILVGPSGSGKSCLANIWSDKSR---------------STRFSNIAKSLDSILIDTRKPV 111 +IL GP G+GK+ + I K + + A + + + Sbjct: 48 MILYGPPGTGKTTIGEIIRSKLGNDYHFEFFSASLQGTADLKKHFAHGERLKRVGQQLVL 107 Query: 112 LLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++I L+ + +F + + +L+ A T S+ V P L SR + + + Sbjct: 108 FVDEIHRLNKSQQDVFLP---VTEKGIIILIGATTENPSFEVN-PALLSRCRLVILKGLK 163 Query: 172 LPDD-DFLEKVIVK--MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228 D L K + K + + + +D ++ I Q A L+D + A + Sbjct: 164 DSDISALLNKALEKDLILKESGVTVDGEVIEVIAQSSGGDARIALNLLDTLVESAAALDK 223 Query: 229 GITRSLAAEVLKETQ 243 + L EV+ E Sbjct: 224 PV---LDLEVMNELS 235 >gi|41615258|ref|NP_963756.1| hypothetical protein NEQ475 [Nanoarchaeum equitans Kin4-M] gi|40068982|gb|AAR39317.1| NEQ475 [Nanoarchaeum equitans Kin4-M] Length = 826 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 46/121 (38%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110 P + V+L GP G+GK+ LA +++S + S + S + + Sbjct: 224 PPKGVLLYGPPGTGKTLLAKAVANESGAYFISINGPEIVSKYVGESEAKLREIFEEAQKN 283 Query: 111 ----VLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + ++ QL +++ + +++ A P + Sbjct: 284 APAIIFIDEIDAIAPKRDEAVGEVERRLVAQLLTLMDGLKSRGKVIVIAATNRPNALDPA 343 Query: 155 L 155 L Sbjct: 344 L 344 Score = 43.2 bits (101), Expect = 0.030, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 16/74 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106 P + V+L GP G+GK+ LA + +S + + I + Sbjct: 518 PPKGVLLYGPPGTGKTLLAKAAASESGANFIAVKGPEILNKWVGESERAIREIFRKAKQA 577 Query: 107 TRKPVLLEDIDLLD 120 + +++ID + Sbjct: 578 APAIIFIDEIDAIA 591 >gi|149180199|ref|ZP_01858704.1| transposase (23) [Bacillus sp. SG-1] gi|148852391|gb|EDL66536.1| transposase (23) [Bacillus sp. SG-1] Length = 254 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 52/119 (43%), Gaps = 24/119 (20%) Query: 62 WPSRVVILV--GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL--------------- 104 W ++ ++ GP G GK+ L+ ++ + + I ++ ++ Sbjct: 96 WIEQLYNIIFLGPPGVGKTHLSIGLGIEALNQGYKVIFTTMGDLIQALKTEEITRKSKTR 155 Query: 105 ---IDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 I V+++D+ + + + FH+IN+++ SS+++T+ P WG L D Sbjct: 156 MKRIREADLVIIDDLMFMAMDKQEANMFFHLINNLY-NQSSIILTSNKGPKEWGELLGD 213 >gi|146304797|ref|YP_001192113.1| replication factor C large subunit [Metallosphaera sedula DSM 5348] gi|145703047|gb|ABP96189.1| replication factor C large subunit [Metallosphaera sedula DSM 5348] Length = 443 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 37/212 (17%), Positives = 81/212 (38%), Gaps = 32/212 (15%) Query: 54 RLIDSWPSW-PSRVVI-LVGPSGSGKSCLANIWSD-------KSRS---------TRFSN 95 IDSW PS + L GP G+GK+ LA ++ ++ + Sbjct: 29 SWIDSWLKGSPSSTAVMLYGPPGTGKTSLAIALANTYKLELVETNASDTRNLTSLRAIVE 88 Query: 96 IAKSLDSILIDTRKPVLLEDIDLLDFNDT--QLFHIINSIHQYDSSLLMTARTFPVSWGV 153 A S+ K + L+++D + + I+ I +LM A W Sbjct: 89 RASISGSLFGIRGKLIFLDEVDGIQPKQDYGAVSAILEIIKNTKYPILMAANDP---WNP 145 Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213 L DL A ++++ + +++ K+ + +I + I++ + +A Sbjct: 146 NLRDLR---NAVKMIEVKKLGKIAMRRLLKKICSGEKIKCEDNALDQIIEASDGDSRYAI 202 Query: 214 KLVDKMDNLALSRG-MGITRSLAAEVLKETQQ 244 + +++ G +T L +E+++ ++ Sbjct: 203 NFLQ-----SIAEGYGEVTEKLVSELVRRKER 229 >gi|228915217|ref|ZP_04078812.1| Prophage LambdaBa02, DNA replication protein DnaC [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228844448|gb|EEM89504.1| Prophage LambdaBa02, DNA replication protein DnaC [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 196 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 51/125 (40%), Gaps = 24/125 (19%) Query: 52 AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------- 104 AV+ + ++ W ++L G G+GK+ LA ++ + + +S+ ++ Sbjct: 32 AVKYVKTFKEWNGESLMLWGEPGNGKTHLAAAIVNELSKKGYIVVFQSVPELIQRIRSTF 91 Query: 105 --------------IDTRKPVLLEDIDL---LDFNDTQLFHIINSIHQYDSSLLMTARTF 147 + ++L+DI ++ + +LF+II+ ++ + L T+ Sbjct: 92 NSENKENETQIMRALLECDLLILDDIGAEKTTEWVEEKLFNIIDGRYRKELPTLYTSNLE 151 Query: 148 PVSWG 152 P Sbjct: 152 PKELK 156 >gi|183982180|ref|YP_001850471.1| hypothetical protein MMAR_2167 [Mycobacterium marinum M] gi|183175506|gb|ACC40616.1| conserved alanine, valine and leucine rich protein [Mycobacterium marinum M] Length = 452 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 45/214 (21%), Positives = 75/214 (35%), Gaps = 48/214 (22%) Query: 30 FSFPRCLGISRDDLLVHSAIEQAVRL----IDS--------WPSWPSRVVI--------- 68 F P S L V + AVR+ +D P P R ++ Sbjct: 10 FDLPGAPQHSDHGLEVSAGAPLAVRMRPESLDEVVGQGHLLAPGAPLRRLVEGSGVASVI 69 Query: 69 LVGPSGSGKSCLANIWSDKSR----STRFSNIAKSLDSILIDTRKPVL---------LED 115 L GP GSGK+ LA + S + + + +I+T + VL +++ Sbjct: 70 LYGPPGSGKTTLAALISHATGRRFEALSALSAGVKDVRAVIETARQVLRRGEQTVLFIDE 129 Query: 116 IDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 + L S + LL+ A T S+ V P L SR + ++++ Sbjct: 130 VHRFSKTQQDALL----SAVENRVVLLVAATTENPSFSVVAP-LLSR---SLILQLHPLG 181 Query: 175 DDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQ 203 D + V+ + D R + I +VQ Sbjct: 182 ADDIRAVVQRAAQDPRGLGGRVAIAPDATDLLVQ 215 >gi|296241870|ref|YP_003649357.1| replication factor C large subunit [Thermosphaera aggregans DSM 11486] gi|296094454|gb|ADG90405.1| replication factor C large subunit [Thermosphaera aggregans DSM 11486] Length = 430 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 39/205 (19%), Positives = 79/205 (38%), Gaps = 30/205 (14%) Query: 53 VRLIDSWPSWPSRV--VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLD--------- 101 + +++W P + V+L GP+G GK+ L + F A Sbjct: 30 LNWLENWGK-PGQKKAVLLHGPAGCGKTSLVEAVARSKGYQLFEMNASDFRRKSDIESIA 88 Query: 102 ------SILIDTRKPVLLEDIDLLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 S L RK +LL+++D ++ ++ + II I+ + ++MTA P S + Sbjct: 89 KIAAQTSGLTGKRKIILLDEVDGINARADEGGIEAIIELINVSKNPIVMTANN-PYSKNL 147 Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213 LP L + + + + + + K+ +I + I +R E Sbjct: 148 -LP-LR---QNVLEIPMKRLSETHVVTALKKICGAEKIECSDEALREIAKRSE---GDLR 199 Query: 214 KLVDKMDNLALSRGMGITRSLAAEV 238 ++ + +A + G +T L + Sbjct: 200 SAINDLQAIAETYG-KVTLELVKSL 223 >gi|302382657|ref|YP_003818480.1| MgsA AAA+ ATPase-like protein [Brevundimonas subvibrioides ATCC 15264] gi|302193285|gb|ADL00857.1| MgsA AAA+ ATPase-like protein [Brevundimonas subvibrioides ATCC 15264] Length = 434 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 25/146 (17%), Positives = 50/146 (34%), Gaps = 26/146 (17%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 +IL GP G+GK+ +A + + + + S + + + + + Sbjct: 52 GSMILWGPPGTGKTTIARLLAKAAGYQYQQISAVFSGVADLKKAFEQA----RVRRAAGQ 107 Query: 123 DTQLF----HIINSIHQYD---------SSLLMTARTFPV-SWGVCLPDLCSRLKAATVV 168 T LF H N Q +L+ P L SR + V Sbjct: 108 STLLFVDEIHRFNRAQQDGFLPFVEEGVVTLVGATTENPSFELNGA---LLSR---SQVF 161 Query: 169 KISLPDDDFLEKVIVKMFADRQIFID 194 + DD L +++++ A+ + + Sbjct: 162 VLKRLDDAALNQLLIRAEAEEGLPLP 187 >gi|319776484|ref|YP_004138972.1| ATPase [Haemophilus influenzae F3047] gi|319897261|ref|YP_004135456.1| atpase [Haemophilus influenzae F3031] gi|317432765|emb|CBY81130.1| predicted ATPase [Haemophilus influenzae F3031] gi|317451075|emb|CBY87308.1| predicted ATPase [Haemophilus influenzae F3047] Length = 446 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 45/204 (22%), Positives = 81/204 (39%), Gaps = 37/204 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI-----------LIDTRKPVLL 113 +IL GP G+GK+ LA I + + + R S + + I L D + + + Sbjct: 53 MILWGPPGTGKTTLAEIIAQRINAEVERISAVTSGIKEIREAIDRAKQNRLSDRKTILFV 112 Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++ + + F HI + + + + A T S+ + L SR A V + Sbjct: 113 DEVHRFNKSQQDAFLPHI-----EDGTVIFIGATTENPSFELNNA-LLSR---ARVYVLK 163 Query: 172 LPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERS----LVFAEKLVDKMD 220 +E+V+ + D R + +++ L + + + L E +VD D Sbjct: 164 SLRTAEIEQVLQQAVEDPERGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMAD 223 Query: 221 NLALSRGMGITRSLAAEVLKETQQ 244 G I R+L EVL E Q Sbjct: 224 ET--ENGKKIDRTLLKEVLGERQA 245 >gi|332982999|ref|YP_004464440.1| IstB domain-containing protein ATP-binding protein [Mahella australiensis 50-1 BON] gi|332700677|gb|AEE97618.1| IstB domain protein ATP-binding protein [Mahella australiensis 50-1 BON] Length = 225 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 24/157 (15%), Positives = 59/157 (37%), Gaps = 29/157 (18%) Query: 40 RDDLLVHSAIEQAVRLIDSWPSW--PSRVVILVGPSGSGKSCLANIWSDK---------- 87 D+ + + A+ ++ + + ++L GP G GK+ LA ++ Sbjct: 53 FDNFVSAGQLRNALEQATAFAAGFPAVKGLLLTGPVGVGKTHLAAAIVNELTKRMYVVVF 112 Query: 88 -SRSTRFSNIAKSLDSI---------LIDTRKPVLLEDIDLLDFNDTQ---LFHIINSIH 134 + + S I ++ + + ++++D+ +D L+ IIN ++ Sbjct: 113 GNSISIISRIKQTYGKTGESELDIINALTSVDLLVIDDLGKEKASDNTSAILYQIINRLY 172 Query: 135 QYDSSLLMTARTFPVSWGVCLPD----LCSRLKAATV 167 + + +++T L + + SRL V Sbjct: 173 EEERPVVITTNYTSDMLANQLGERGQAIVSRLTEMCV 209 >gi|299137091|ref|ZP_07030274.1| AAA ATPase central domain protein [Acidobacterium sp. MP5ACTX8] gi|298601606|gb|EFI57761.1| AAA ATPase central domain protein [Acidobacterium sp. MP5ACTX8] Length = 447 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 42/199 (21%), Positives = 78/199 (39%), Gaps = 34/199 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125 ++ GP G GK+ LA I + +++++ A I K V++E +F Sbjct: 59 LLFWGPPGVGKTTLAKIIARETQASFIEFSAVLSG---IKEIKQVMVEAEKAAEFGSRTI 115 Query: 126 LF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 LF H N + + L+ A T S+ + L SR V + Sbjct: 116 LFVDEIHRFNKAQQDAFLPYVERGTIRLIGATTENPSFEINAA-LLSR---CRVYTLRAL 171 Query: 174 DDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA-LS 225 D + ++ + D Q+ +++ I S A ++ ++ A L+ Sbjct: 172 GQDEVVALLQRALQDAERGLGALQLEVEEGALEAIASY---SSGDARNALNALEVGAKLT 228 Query: 226 RGMG---ITRSLAAEVLKE 241 G G +T++LAAE L++ Sbjct: 229 EGRGEKLLTKALAAEALQQ 247 >gi|94497785|ref|ZP_01304351.1| transposase [Sphingomonas sp. SKA58] gi|94422674|gb|EAT07709.1| transposase [Sphingomonas sp. SKA58] Length = 280 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 22/112 (19%) Query: 67 VILVGPSGSGKSCLANI---------WS-------DKSRSTRFSNIAKSLDSIL--IDTR 108 +IL GP G GKS LA W D + + + +L++ + +D Sbjct: 109 LILFGPPGGGKSHLAAAIGLALIENGWRVLFARTSDLVQKLQVARRELALEAAITKLDKY 168 Query: 109 KPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 ++L+D+ + + + LF +I S S+L+TA W PD Sbjct: 169 HLLILDDLAYVAKDQAETSVLFELI-SARYERKSMLITANQPFGEWNRIFPD 219 >gi|310828857|ref|YP_003961214.1| hypothetical protein ELI_3289 [Eubacterium limosum KIST612] gi|308740591|gb|ADO38251.1| hypothetical protein ELI_3289 [Eubacterium limosum KIST612] Length = 446 Score = 49.8 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 76/188 (40%), Gaps = 34/188 (18%) Query: 53 VRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS-----LDSILIDT 107 RLI++ V+ GP G+GK+ LA I + ++++ + A + + IL Sbjct: 46 YRLIEADK---LSSVVFYGPPGTGKTTLAKIIAHRTQAAFYELNAVTSGKKEITEILDKA 102 Query: 108 RKPVLLEDIDLLDF-NDTQLFHIINSIHQY--------DSSLLMTARTFPVSWGVCLPDL 158 + + + + + F ++ H N Q +L+ A T + + P L Sbjct: 103 KDNLGIYNRKSILFIDEI---HRFNKAQQDALLPSVEGGLVILIGATTENPYFEINSP-L 158 Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVF 211 SR +T+ + DD ++ ++ + D+ ++ +D++ ++ S Sbjct: 159 LSR---STIFEFKTLTDDEIKGLLRRAVTDKKKGYGSMKVKVDEEALDHLTAV---SNGD 212 Query: 212 AEKLVDKM 219 + ++ + Sbjct: 213 VRRALNAL 220 >gi|303233454|ref|ZP_07320122.1| putative chromosomal replication initiator protein DnaA [Atopobium vaginae PB189-T1-4] gi|302480462|gb|EFL43554.1| putative chromosomal replication initiator protein DnaA [Atopobium vaginae PB189-T1-4] Length = 698 Score = 49.8 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 26/178 (14%), Positives = 55/178 (30%), Gaps = 32/178 (17%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSW----PSRVVILVGPSGSGKSCLANIWSD---KSR 89 ++ D + A + + + SG GK+ L + ++ Sbjct: 345 KLTFDRFVQGEENMFAFQAAQQVACGINSQSYNPLFIYSKSGLGKTHLLRAIQNYIIQND 404 Query: 90 STRFSNIAKSLDSILIDTRKPVLLE----------DIDLLDFNDTQ-----------LFH 128 R + + + TR +E +D+L +D Q F Sbjct: 405 PERVCIYKTATEFVDEYTRAWQSIEHKGALYERYKHVDVLIIDDIQNMRTAAGTIKFFFD 464 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLP--DLC--SRLKAATVVKISLPDDDFLEKVI 182 N++ +++ A P + D SR+ + V I +P+ + +I Sbjct: 465 TFNTLMASGKQIVLAADRSPQELQMGESKFDERETSRMDSGVTVTIQVPNYELKYNLI 522 >gi|312977419|ref|ZP_07789167.1| ATPase, AAA family [Lactobacillus crispatus CTV-05] gi|310895850|gb|EFQ44916.1| ATPase, AAA family [Lactobacillus crispatus CTV-05] Length = 420 Score = 49.8 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 71/191 (37%), Gaps = 28/191 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK---------PVLLEDID 117 ++L GP G+GK+ LA I + ++ F++ S+D+ +L+++I Sbjct: 44 LLLWGPPGTGKTSLAQIIAKEND-YPFASFNASIDNKAQLNNIINAYKYQTFVLLIDEIH 102 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 + N + LL+ + T + P + SR + + + +D Sbjct: 103 RMTKNLQDFLLPY---LENGHVLLVGSTTENPIMSIV-PAVRSR---CQIFEFNPLTEDD 155 Query: 178 LEKVIVKMFA------DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231 + V+ K D Q ++K I + L A +++ + AL IT Sbjct: 156 IAAVLNKACTKVLKLVDHQ--VEKNSLNLIAAAADGDLRIALNILETV--HAL-NPKKIT 210 Query: 232 RSLAAEVLKET 242 + K+ Sbjct: 211 LANVKSFTKQQ 221 >gi|256850208|ref|ZP_05555637.1| recombination factor protein RarA [Lactobacillus crispatus MV-1A-US] gi|256712845|gb|EEU27837.1| recombination factor protein RarA [Lactobacillus crispatus MV-1A-US] Length = 420 Score = 49.8 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 71/191 (37%), Gaps = 28/191 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK---------PVLLEDID 117 ++L GP G+GK+ LA I + ++ F++ S+D+ +L+++I Sbjct: 44 LLLWGPPGTGKTSLAQIIAKEND-YPFASFNASIDNKAQLNNIINAYKYQTLVLLIDEIH 102 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 + N + LL+ + T + P + SR + + + +D Sbjct: 103 RMTKNLQDFLLPY---LENGHVLLVGSTTENPIMSIV-PAVRSR---CQIFEFNPLTEDD 155 Query: 178 LEKVIVKMFA------DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231 + V+ K D Q ++K I + L A +++ + AL IT Sbjct: 156 IAAVLNKACTKVLKLVDHQ--VEKNSLNLIAAAADGDLRIALNILETV--HAL-NPKKIT 210 Query: 232 RSLAAEVLKET 242 + K+ Sbjct: 211 LANVKSFTKQQ 221 >gi|156101027|ref|XP_001616207.1| cell division cycle protein 48 homologue [Plasmodium vivax SaI-1] gi|148805081|gb|EDL46480.1| cell division cycle protein 48 homologue, putative [Plasmodium vivax] Length = 822 Score = 49.8 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 64/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R V+L GP GSGK+C+A ++++ + F +N+ ++ + + Sbjct: 240 PPRGVLLYGPPGSGKTCIARAVANETGAFFFLINGPEVMSKMAGEAEANLRRAFEEAEKN 299 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ I +++ A Sbjct: 300 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGIKTRGQVVVIAAT---NRQNSI 356 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PDD+ +++ + + + + Sbjct: 357 DPALR-RFGRFDREIDIGVPDDNGRFEIL--RIHTKNMKLSPDV 397 Score = 39.0 bits (90), Expect = 0.59, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 24/57 (42%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA + + + S L ++ + + E D Sbjct: 513 PSRGVLFYGPPGCGKTLLAKAVASECSANFVSIKGPELLTMWFGESEANVREVFDKA 569 >gi|294141065|ref|YP_003557043.1| ATPase [Shewanella violacea DSS12] gi|293327534|dbj|BAJ02265.1| ATPase, AAA family [Shewanella violacea DSS12] Length = 443 Score = 49.8 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 76/192 (39%), Gaps = 27/192 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 ++ GP G+GK+ LA + + + + R S + + I +++ T Sbjct: 52 MVFWGPPGTGKTTLAELVAHYANAHVERISAVTSGVKEIRAAIEHA---QNVAQSRGQRT 108 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + + + + A T S+ + L SR + + +++ Sbjct: 109 LLFVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEINNA-LLSRARVYLIKRLT- 166 Query: 173 PDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 +D+ ++ V + D RQ+ I ++A + + A L++ M ++ ++ Sbjct: 167 -NDEIIQIVRQALIDDERGLGKRQLTIPDEVAEKLANVCDGDARKALNLIELMSDM-IAD 224 Query: 227 GMGITRSLAAEV 238 G T + EV Sbjct: 225 GESFTEQMIIEV 236 >gi|262046401|ref|ZP_06019363.1| recombination factor protein RarA [Lactobacillus crispatus MV-3A-US] gi|260573272|gb|EEX29830.1| recombination factor protein RarA [Lactobacillus crispatus MV-3A-US] Length = 421 Score = 49.8 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 71/191 (37%), Gaps = 28/191 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK---------PVLLEDID 117 ++L GP G+GK+ LA I + ++ F++ S+D+ +L+++I Sbjct: 45 LLLWGPPGTGKTSLAQIIAKEND-YPFASFNASIDNKAQLNNIINAYKYQTLVLLIDEIH 103 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 + N + LL+ + T + P + SR + + + +D Sbjct: 104 RMTKNLQDFLLPY---LENGHVLLVGSTTENPIMSIV-PAVRSR---CQIFEFNPLTEDD 156 Query: 178 LEKVIVKMFA------DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231 + V+ K D Q ++K I + L A +++ + AL IT Sbjct: 157 IAAVLNKACTKVLKLVDHQ--VEKNSLNLIAAAADGDLRIALNILETV--HAL-NPKKIT 211 Query: 232 RSLAAEVLKET 242 + K+ Sbjct: 212 LANVKSFTKQQ 222 >gi|42519086|ref|NP_965016.1| recombination factor protein RarA [Lactobacillus johnsonii NCC 533] gi|41583373|gb|AAS08982.1| hypothetical protein LJ_1160 [Lactobacillus johnsonii NCC 533] Length = 420 Score = 49.8 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 39/193 (20%), Positives = 73/193 (37%), Gaps = 30/193 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSR------STRFSNIAKSLDSILIDTRKPVL--LEDIDL 118 ++L GP G+GK+ LA I + + + N AK + I + + +++I Sbjct: 44 LLLWGPPGTGKTSLAQIIAREYDYPLATFNASVDNKAKLMQIINTYPYQSFVLLIDEIHR 103 Query: 119 --LDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 D L ++ N LL+ A T + P + SR + + DD Sbjct: 104 MTTTLQDYLLPYLEN-----GQILLIGATTENPIMSIV-PAVRSR---CQIFEFETLDDK 154 Query: 177 FLEKVIVK------MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 + V+++ ++QI DK+ I + + L A L++ + G I Sbjct: 155 DISHVLIRALKEVFHLEEKQI--DKEAINIIARSADGDLRVALNLLETIHA---INGDEI 209 Query: 231 TRSLAAEVLKETQ 243 + E +K Sbjct: 210 SIESVKEFVKGQH 222 >gi|13475199|ref|NP_106763.1| transposase [Mesorhizobium loti MAFF303099] gi|14025950|dbj|BAB52549.1| transposase [Mesorhizobium loti MAFF303099] Length = 228 Score = 49.8 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 23/134 (17%) Query: 45 VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI---------WS-------DKS 88 + A A+ DSW ++L GP G GKS LA+ W D Sbjct: 88 ISKAQVMAITAGDSWLE-KGANLLLFGPPGGGKSHLASAIGLALIETGWRVMFTRTTDLV 146 Query: 89 RSTRFSNIAKSLDSIL--IDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMT 143 + + + L++ + +D ++L+D+ + + + LF +I S SLL+T Sbjct: 147 QKLQVARRELGLEAAINRLDRFHLLILDDLAYVTKDQAETSVLFELI-SARYERRSLLIT 205 Query: 144 ARTFPVSWGVCLPD 157 A WG PD Sbjct: 206 ANQPFGEWGKVFPD 219 >gi|291277124|ref|YP_003516896.1| helicase-like protein [Helicobacter mustelae 12198] gi|290964318|emb|CBG40168.1| helicase-like protein [Helicobacter mustelae 12198] Length = 394 Score = 49.8 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 69/179 (38%), Gaps = 22/179 (12%) Query: 70 VGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRK--------PVLLEDIDLL 119 GP G GK+ LA I + + F+ + +L+S+ ++ V ++++ L Sbjct: 44 YGPPGVGKTTLARIVAKELEMPFLEFNGVDFALESLRCALKEYKNTLIKPVVFIDEVHRL 103 Query: 120 DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179 N + ++ + + + +L + P + + L SR + ++++ L Sbjct: 104 SKNQQEF--LLPVMENHQAIILGASTQNP--FSILTNALRSR---SILLELHPLKSHHLR 156 Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238 +++ K I Y+ M+ S A ++ +D + IT L + Sbjct: 157 EILQKALDLYPCKITSDARVYL---MDSSNGDARAMLHLLDIA--MQADEITLPLLKSI 210 >gi|307728952|ref|YP_003906176.1| AAA ATPase central domain-containing protein [Burkholderia sp. CCGE1003] gi|307583487|gb|ADN56885.1| AAA ATPase central domain protein [Burkholderia sp. CCGE1003] Length = 437 Score = 49.8 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 35/189 (18%), Positives = 69/189 (36%), Gaps = 20/189 (10%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA + +D + + ++ S + D R+ V + + + T + Sbjct: 48 MILWGPPGVGKTTLARLMADAFHAQFIA--LSAVLSGVKDIREAVETAQVHRANGHQTLV 105 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N + + + A T S+ V L SR A V + D Sbjct: 106 FVDEVHRFNKSQQDAFLPHVESGLFVFVGATTENPSFEVNSA-LLSR---AAVYVLKSLD 161 Query: 175 DDFLEKVIVK-MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITR 232 +D L +++ + + + ++ + ++ + A + I Sbjct: 162 EDELRELLARAQHELGGLTFTDEARDALIGSADGDGRKLLNNLEIVARAASQQKTTEIDG 221 Query: 233 SLAAEVLKE 241 +L L E Sbjct: 222 ALLGSALAE 230 >gi|227878587|ref|ZP_03996511.1| crossover junction endodeoxyribonuclease [Lactobacillus crispatus JV-V01] gi|293380972|ref|ZP_06627004.1| recombination factor protein RarA [Lactobacillus crispatus 214-1] gi|227861822|gb|EEJ69417.1| crossover junction endodeoxyribonuclease [Lactobacillus crispatus JV-V01] gi|290922469|gb|EFD99439.1| recombination factor protein RarA [Lactobacillus crispatus 214-1] Length = 420 Score = 49.8 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 71/191 (37%), Gaps = 28/191 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK---------PVLLEDID 117 ++L GP G+GK+ LA I + ++ F++ S+D+ +L+++I Sbjct: 44 LLLWGPPGTGKTSLAQIIAKEND-YPFASFNASIDNKAQLNNIINAYKYQTLVLLIDEIH 102 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 + N + LL+ + T + P + SR + + + +D Sbjct: 103 RMTKNLQDFLLPY---LENGHVLLVGSTTENPIMSIV-PAVRSR---CQIFEFNPLTEDD 155 Query: 178 LEKVIVKMFA------DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231 + V+ K D Q ++K I + L A +++ + AL IT Sbjct: 156 IAAVLNKACTKVLKLVDHQ--VEKNSLNLIAAAADGDLRIALNILETV--HAL-NPKKIT 210 Query: 232 RSLAAEVLKET 242 + K+ Sbjct: 211 LANVKSFTKQQ 221 >gi|118617371|ref|YP_905703.1| recombination factor protein RarA [Mycobacterium ulcerans Agy99] gi|118569481|gb|ABL04232.1| conserved alanine, valine and leucine rich protein [Mycobacterium ulcerans Agy99] Length = 452 Score = 49.8 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 44/214 (20%), Positives = 75/214 (35%), Gaps = 48/214 (22%) Query: 30 FSFPRCLGISRDDLLVHSAIEQAVRL----IDS--------WPSWPSRVVI--------- 68 F P S L V + AVR+ +D P P R ++ Sbjct: 10 FDLPGAPQHSDHALEVSAGAPLAVRMRPESLDEVVGQGHLLAPGAPLRRLVEGSGVASVI 69 Query: 69 LVGPSGSGKSCLANIWSDKSR----STRFSNIAKSLDSILIDTRKPVL---------LED 115 L GP GSGK+ LA + S + + + +I+T + VL +++ Sbjct: 70 LYGPPGSGKTTLAALISHATGRRFEALSALSAGVKDVRAVIETARQVLRRGEQTVLFIDE 129 Query: 116 IDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 + L S + LL+ A T S+ V P L SR + ++++ Sbjct: 130 VHRFSKTQQDALL----SAVENRVVLLVAATTENPSFSVVAP-LLSR---SLILQLHPLG 181 Query: 175 DDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQ 203 + + V+ + D R + I +VQ Sbjct: 182 AEDIRAVVQRAAQDPRGLGGRVAIAPDATDLLVQ 215 >gi|312600974|gb|ADQ90229.1| Chromosomal replication initiator protein dnaA [Mycoplasma hyopneumoniae 168] Length = 463 Score = 49.8 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 25/185 (13%), Positives = 57/185 (30%), Gaps = 37/185 (20%) Query: 67 VILVGPSGSGKSCLANI--------------------------WSDKSRSTRFSNIAKSL 100 + + GPSG GK+ N W ++ + S L Sbjct: 148 IFISGPSGIGKTHFINAIGNLLVEKQKKVFYINDYKFISCVSSWMQNGQNEKISEFLNWL 207 Query: 101 DSILIDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 + L +DI L I+N + D ++++T+ P G Sbjct: 208 SQV-----DAFLFDDIQGLANKQQTSIVALEILNRFIEEDKTVIITSDKSPSLLGGFEER 262 Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID---KKLAAYIVQRMERSLVFAEK 214 +R + +K++ P + ++ + ++ ++ + S+ E Sbjct: 263 FITRFSSGLHIKLNKPKKEDFLRIFKHKLVEEKLEKHIWTNDAFEFLSKHFRNSIRELEG 322 Query: 215 LVDKM 219 + + Sbjct: 323 ALKSI 327 >gi|144227417|gb|AAZ44095.2| chromosomal replication initiator protein [Mycoplasma hyopneumoniae J] gi|144575230|gb|AAZ53378.2| chromosomal replication initiator protein [Mycoplasma hyopneumoniae 7448] Length = 463 Score = 49.8 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 25/185 (13%), Positives = 57/185 (30%), Gaps = 37/185 (20%) Query: 67 VILVGPSGSGKSCLANI--------------------------WSDKSRSTRFSNIAKSL 100 + + GPSG GK+ N W ++ + S L Sbjct: 148 IFISGPSGIGKTHFINAIGNLLVEKQKKVFYINDYKFISCVSSWMQNGQNEKISEFLNWL 207 Query: 101 DSILIDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 + L +DI L I+N + D ++++T+ P G Sbjct: 208 SQV-----DAFLFDDIQGLANKQQTSIVALEILNRFIEEDKTVIITSDKSPSLLGGFEER 262 Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID---KKLAAYIVQRMERSLVFAEK 214 +R + +K++ P + ++ + ++ ++ + S+ E Sbjct: 263 FITRFSSGLHIKLNKPKKEDFLRIFKHKLVEEKLEKHIWTNDAFEFLSKHFRNSIRELEG 322 Query: 215 LVDKM 219 + + Sbjct: 323 ALKSI 327 >gi|71893360|ref|YP_278806.1| chromosomal replication initiation protein [Mycoplasma hyopneumoniae J] gi|72080343|ref|YP_287401.1| chromosomal replication initiation protein [Mycoplasma hyopneumoniae 7448] Length = 466 Score = 49.8 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 25/185 (13%), Positives = 57/185 (30%), Gaps = 37/185 (20%) Query: 67 VILVGPSGSGKSCLANI--------------------------WSDKSRSTRFSNIAKSL 100 + + GPSG GK+ N W ++ + S L Sbjct: 151 IFISGPSGIGKTHFINAIGNLLVEKQKKVFYINDYKFISCVSSWMQNGQNEKISEFLNWL 210 Query: 101 DSILIDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 + L +DI L I+N + D ++++T+ P G Sbjct: 211 SQV-----DAFLFDDIQGLANKQQTSIVALEILNRFIEEDKTVIITSDKSPSLLGGFEER 265 Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID---KKLAAYIVQRMERSLVFAEK 214 +R + +K++ P + ++ + ++ ++ + S+ E Sbjct: 266 FITRFSSGLHIKLNKPKKEDFLRIFKHKLVEEKLEKHIWTNDAFEFLSKHFRNSIRELEG 325 Query: 215 LVDKM 219 + + Sbjct: 326 ALKSI 330 >gi|54019970|ref|YP_115516.1| chromosomal replication initiation protein [Mycoplasma hyopneumoniae 232] gi|53987143|gb|AAV27344.1| chromosomal replication initiator protein [Mycoplasma hyopneumoniae 232] Length = 463 Score = 49.8 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 25/185 (13%), Positives = 57/185 (30%), Gaps = 37/185 (20%) Query: 67 VILVGPSGSGKSCLANI--------------------------WSDKSRSTRFSNIAKSL 100 + + GPSG GK+ N W ++ + S L Sbjct: 148 IFISGPSGIGKTHFINAIGNLLVEKQKKVFYINDYKFISCVSSWMQNGQNEKISEFLNWL 207 Query: 101 DSILIDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 + L +DI L I+N + D ++++T+ P G Sbjct: 208 SQV-----DAFLFDDIQGLANKQQTSIVALEILNRFIEEDKTVIITSDKSPSLLGGFEER 262 Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID---KKLAAYIVQRMERSLVFAEK 214 +R + +K++ P + ++ + ++ ++ + S+ E Sbjct: 263 FITRFSSGLHIKLNKPKKEDFLRIFKHKLVEEKLEKHIWTNDAFEFLSKHFRNSIRELEG 322 Query: 215 LVDKM 219 + + Sbjct: 323 ALKSI 327 >gi|94985501|ref|YP_604865.1| recombination factor protein RarA [Deinococcus geothermalis DSM 11300] gi|94555782|gb|ABF45696.1| AAA ATPase, central region [Deinococcus geothermalis DSM 11300] Length = 451 Score = 49.8 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 67/190 (35%), Gaps = 26/190 (13%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I GP G GK+ LA + + + + A S + + D R+ V+ + T Sbjct: 65 GSLIFWGPPGVGKTTLARLIASEVGAHFIPLSAVS--AGVKDVREAVMEAERLRARGQPT 122 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + L+ A T S+ V P L SR A + + Sbjct: 123 ILFLDEIHRFNKAQQDALLPHVESGLLTLIGATTENPSFEVN-PALRSR---ARTLVLEP 178 Query: 173 PDDDFLEKVIVKMFAD-RQI---FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228 + + ++ + AD R + + + + + A + + ++ A + Sbjct: 179 LSQEDVRGLLERALADPRGLPGVAAQPEALDLLARLAD---GDARRALGTLEVAA-TLAN 234 Query: 229 GITRSLAAEV 238 +T E Sbjct: 235 PVTSEAVREA 244 >gi|291295124|ref|YP_003506522.1| AAA ATPase central domain-containing protein [Meiothermus ruber DSM 1279] gi|290470083|gb|ADD27502.1| AAA ATPase central domain protein [Meiothermus ruber DSM 1279] Length = 432 Score = 49.8 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 64/181 (35%), Gaps = 14/181 (7%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 IL GP GSGK+ LA + + + A + I E L+ F D Sbjct: 54 FILWGPPGSGKTTLARLMAQGVGRAMVALSAVNAGLKDIKEVVAQAQEQGGLVLFLDEI- 112 Query: 127 FHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178 H N + L+ A T S+ V P L SR A V + + + Sbjct: 113 -HRFNKAQQDALLPHVESGLLTLIGATTENPSFEVN-PALRSR---ARVYVLEPLGQEAI 167 Query: 179 EKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238 ++++ + Q + + + ++ A + + ++ A ++ + A E Sbjct: 168 QRLLERALHHPQGLPAQAEPEALHLIAQAAMGDARRALSALELAASLGEGQVSVAAAREA 227 Query: 239 L 239 L Sbjct: 228 L 228 >gi|114332440|ref|YP_748662.1| recombination factor protein RarA [Nitrosomonas eutropha C91] gi|114309454|gb|ABI60697.1| Recombination protein MgsA [Nitrosomonas eutropha C91] Length = 438 Score = 49.8 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 41/194 (21%), Positives = 70/194 (36%), Gaps = 32/194 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIA-----KSLDSILIDTRKPVLLEDIDLLDF 121 +IL GP GSGK+ LA + + + + A K + + R + Sbjct: 51 MILWGPPGSGKTTLARLMAQAFDTEFIAISAVLSGVKDIREAIERARFAL------QHTG 104 Query: 122 NDTQLF----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVV 168 T LF H N Q D+ L L+T A T S+ V L SR A V Sbjct: 105 RSTLLFVDEVHRFNKAQQ-DAFLPHVEQGLITFIGATTENPSFEVNGA-LLSR---AQVY 159 Query: 169 KISLPDDDFLEKVIVKMF--ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 ++ D L ++ + A + D +V+ + +++++ + A + Sbjct: 160 TLNALTDPELHQLFERACKIAISNLQFDPDAVELLVKFADGDARRLLNMLEQVKHAADTE 219 Query: 227 GM-GITRSLAAEVL 239 I + VL Sbjct: 220 KTVKIDIAYLNRVL 233 >gi|258593286|emb|CBE69625.1| putative polynucleotide enzyme with nucleotide triphosphate hydrolase domain [NC10 bacterium 'Dutch sediment'] Length = 423 Score = 49.8 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 20/141 (14%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP GSGK+ LA + +++ ++T A + S + + ++ ++ + T Sbjct: 32 PSLILWGPPGSGKTTLAFLLAERCKATFQPFSAVT--SGIKEIKEVIVRAQQERGYGRRT 89 Query: 125 QLF----HIINSIHQY--------DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N Q + +L+ A T S+ V P L SR A VV + Sbjct: 90 LLFIDEIHRFNKAQQDAFLPHVEGGTIVLIGATTENPSFEVIAP-LLSR---AKVVTLRP 145 Query: 173 PDDDFLEKVIVKMFAD--RQI 191 +D L ++ + D R + Sbjct: 146 LAEDALMLILRRALDDQERGL 166 >gi|169629937|ref|YP_001703586.1| hypothetical protein MAB_2853c [Mycobacterium abscessus ATCC 19977] gi|169241904|emb|CAM62932.1| Conserved hypothetical protein [Mycobacterium abscessus] Length = 451 Score = 49.8 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 74/176 (42%), Gaps = 31/176 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVL--------- 112 VIL GP G+GK+ LA++ S + S K + +++ ++R + Sbjct: 65 VILYGPPGTGKTTLASLISGATGRRFEALSALSAGVKEVRAVIENSRTALAYHGQQTVLF 124 Query: 113 LEDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 ++++ L + + LL+ A T S+ V P L SR + ++++ Sbjct: 125 IDEVHRFSKTQQDALL----AAVENRVVLLVAATTENPSFSVVAP-LLSR---SLILQLQ 176 Query: 172 LPDDDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 D+ + +V+ + AD R + +D + + +VQ + A + + ++ Sbjct: 177 PLADNDIREVLTRAIADERGLGGAVAVDPEALSLLVQ---LAAGDARRALTALEVA 229 >gi|15638996|ref|NP_218442.1| chromosomal replication initiation protein [Treponema pallidum subsp. pallidum str. Nichols] gi|189025237|ref|YP_001933009.1| chromosomal replication initiation protein [Treponema pallidum subsp. pallidum SS14] gi|6014982|sp|O83047|DNAA_TREPA RecName: Full=Chromosomal replication initiator protein DnaA gi|226735862|sp|B2S1V1|DNAA_TREPS RecName: Full=Chromosomal replication initiator protein DnaA gi|3322256|gb|AAC64999.1| chromosomal replication initiator protein (dnaA) [Treponema pallidum subsp. pallidum str. Nichols] gi|189017812|gb|ACD70430.1| chromosomal replication initiation protein DnaA [Treponema pallidum subsp. pallidum SS14] gi|291059421|gb|ADD72156.1| chromosomal replication initiator protein DnaA [Treponema pallidum subsp. pallidum str. Chicago] Length = 464 Score = 49.8 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 32/238 (13%), Positives = 77/238 (32%), Gaps = 36/238 (15%) Query: 38 ISRDDLLVHS----AIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK----SR 89 + ++ + + A+ + P +++ G G GK+ L + + Sbjct: 123 YTFENFVSGEETKFSHSAAIS-VSKNPGTSYNPLLIYGGVGLGKTHLMQAIGHEIYKTTD 181 Query: 90 STRFSNIAKSLDSILID----------------TRKPVLLEDI---DLLDFNDTQLFHII 130 A++ + I T +L++DI + D +LF+ Sbjct: 182 LNVIYVTAENFGNEFISTLLNKKTQDFKKKYRYTADVLLIDDIHFFENKDGLQEELFYTF 241 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 N + + ++ T L SR +++P + +++K + Sbjct: 242 NELFEKKKQIIFTCDRPVQELKNLSSRLRSRCSRGLSTDLNMPCFETRCAILIKKIQNYN 301 Query: 191 -------IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 I I + + + + ++ E + K+ + IT + +LKE Sbjct: 302 STYPHKAIHISDDVVRLVSENISSNIRDLEGALTKI-IAFIEVSGSITIDIVPSLLKE 358 >gi|32034563|ref|ZP_00134719.1| COG2256: ATPase related to the helicase subunit of the Holliday junction resolvase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 428 Score = 49.8 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 41/203 (20%), Positives = 73/203 (35%), Gaps = 35/203 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I GP G+GK+ LA I + + R S + + I + ++ T Sbjct: 34 MIFWGPPGTGKTTLAEIIAHHFDAEVERLSAVTSGVKEIREAIERA----KLNRQTGRRT 89 Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N Q D +++ T L SR A + + Sbjct: 90 LLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNA---LLSR---AKIYIL 143 Query: 171 SLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + +V+ D R + +I+ + + + FA ++ M ++A Sbjct: 144 KPLQAVEIAQVLTNALYDKERGLGNESYYIEDNVIELLADYVNGDARFALNCLELMSDMA 203 Query: 224 --LSRGMGITRSLAAEVLKETQQ 244 S+G + ++L AEVL E Q Sbjct: 204 EISSQGKRLNKALLAEVLGERQA 226 >gi|296242922|ref|YP_003650409.1| CDC48 subfamily AAA family ATPase [Thermosphaera aggregans DSM 11486] gi|296095506|gb|ADG91457.1| AAA family ATPase, CDC48 subfamily [Thermosphaera aggregans DSM 11486] Length = 744 Score = 49.8 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 22/163 (13%), Positives = 58/163 (35%), Gaps = 33/163 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP G+GK+ LA +++ + + K + + Sbjct: 221 PPKGILLYGPPGTGKTLLAKALANEIGAYFITINGPEIMSKFYGESEERLRKIFEEAEAN 280 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + + +++ A P + Sbjct: 281 APSVIFIDEIDSIAPKREEVTGEVEKRVVAQLLTLMDGLKERGRVIVIGATNRPDALD-- 338 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L + ++I PD +++ R + + + + Sbjct: 339 -PALRRPGRFDREIEIPPPDKKARREILAVH--TRNMPLSEDV 378 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 57/177 (32%), Gaps = 42/177 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP G+GK+ LA + +S + I + + Sbjct: 495 PPKGILLFGPPGTGKTLLAKAVATESGANFITVRGPEVLSKWVGESEKAIRQIFRRAKMV 554 Query: 107 TRKPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 V ++ID + QL ++ I +++ A P Sbjct: 555 APSVVFFDEIDSIAGARGSDPSGVIDRIVNQLLTEMDGIQPLRKVVVIAATNRPDLLDPA 614 Query: 155 LPDLC----SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRME 206 L L RL V + PD +V + R+ I + + + +R E Sbjct: 615 L--LRPGRFDRL-----VYVPPPD--LRARVEIFKVHTRRTPIAEDVNIEELARRTE 662 >gi|254821817|ref|ZP_05226818.1| recombination factor protein RarA [Mycobacterium intracellulare ATCC 13950] Length = 454 Score = 49.8 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 67/176 (38%), Gaps = 30/176 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVL--------L 113 IL GP GSGK+ LA + S + S K + +++ R +L + Sbjct: 68 AILYGPPGSGKTTLAALISQATGRRFEALSALSAGVKDVRAVIEKARTALLHGEQTVLFI 127 Query: 114 EDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +++ L S + LL+ A T S+ V P L SR + ++++ Sbjct: 128 DEVHRFSKTQQDALL----SAVENRVVLLVAATTENPSFSVVAP-LLSR---SLILQLRP 179 Query: 173 PDDDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 D + V+ + D R + + ++ R+ + A + + ++ A Sbjct: 180 LSADDIRTVVQRAIDDPRGLGGQVAVAPDAVD-LLVRL--AAGDARRALTALEVAA 232 >gi|303244483|ref|ZP_07330818.1| AAA family ATPase, CDC48 subfamily [Methanothermococcus okinawensis IH1] gi|302485181|gb|EFL48110.1| AAA family ATPase, CDC48 subfamily [Methanothermococcus okinawensis IH1] Length = 746 Score = 49.8 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 26/169 (15%), Positives = 66/169 (39%), Gaps = 34/169 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + V+L GP G+GK+ LA ++++ + + N+ K + + Sbjct: 226 PPKGVLLAGPPGTGKTLLAKAVANEAGANFYTINGPEIMSKYVGETEENLRKIFEEAEEE 285 Query: 107 TRKPVLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + V +++ID + ++ QL +++ + +++ A P + Sbjct: 286 SPSIVFIDEIDAIAPKRDEASGEVERRMVAQLLTLMDGLESRGQVVVIAATNRPDALD-- 343 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIV 202 P L + + I +PD ++++ R + + + + Y+ Sbjct: 344 -PALRRPGRFDREITIGVPDRKGRKEILQ--IHTRNMPLAEDVDLDYLA 389 Score = 39.4 bits (91), Expect = 0.42, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 21/32 (65%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + V+L GP G+GK+ LA +++S++ S Sbjct: 499 PPKGVLLFGPPGTGKTLLAKAVANESQANFIS 530 >gi|297567908|ref|YP_003686878.1| IstB domain protein ATP-binding protein [Meiothermus silvanus DSM 9946] gi|296852357|gb|ADH65370.1| IstB domain protein ATP-binding protein [Meiothermus silvanus DSM 9946] Length = 248 Score = 49.8 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 33/179 (18%), Positives = 65/179 (36%), Gaps = 31/179 (17%) Query: 20 QPKNKEEQLFFSFPRCLGISR-DDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKS 78 + + + E+ + P R + L A ++A+ + L G G GK+ Sbjct: 64 RGRVESERFVAALPPRYRSCRLEGYLPTPANQEALNACRELRM--GDFLYLHGRPGRGKT 121 Query: 79 CLA-----NIWSDKSRSTRFSNIAKSLDSILIDTRKP-----------VLLEDIDLLDFN 122 LA + R+ F A ++ I R ++L+D + + Sbjct: 122 HLAVGAAYRLARQGYRA-LFVGEAAYMEEIYRSFRGGGEPPDYTWAEVLVLDDFGKIKPS 180 Query: 123 D---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL---PD-----LCSRLKAATVVKI 170 D L+ +I + + +L++T+ P + + D L SRL VV++ Sbjct: 181 DFAYQSLYALIEHANAHCKTLIVTSNYEPGTAACRVSGSNDEAAEALLSRLAQGYVVEV 239 >gi|290558951|gb|EFD92336.1| AAA family ATPase, CDC48 subfamily [Candidatus Parvarchaeum acidophilus ARMAN-5] gi|290559274|gb|EFD92611.1| AAA family ATPase, CDC48 subfamily [Candidatus Parvarchaeum acidophilus ARMAN-5] Length = 764 Score = 49.8 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTR-- 108 P R V+L GP G+GK+ LA +D+S + + + K L I D Sbjct: 247 PPRGVLLYGPPGAGKTLLARAVADESDAHFITINGPEVMSKWVGDAEKKLREIFDDAEKN 306 Query: 109 --KPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + +++ A P + Sbjct: 307 APSIIFIDEIDAIATKREESIGEVEHRVVSQLLTLMDGLKSRGKVIVIAATNRPNAIDPA 366 Query: 155 L 155 L Sbjct: 367 L 367 >gi|212224243|ref|YP_002307479.1| Hypothetical CDC48/VCP [Thermococcus onnurineus NA1] gi|212009200|gb|ACJ16582.1| Hypothetical CDC48/VCP [Thermococcus onnurineus NA1] Length = 838 Score = 49.8 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 25/196 (12%), Positives = 74/196 (37%), Gaps = 41/196 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109 P + V+L GP G+GK+ LA ++++ + + + L I D + Sbjct: 245 PPKGVLLYGPPGTGKTLLAKAVANEANAHFIAINGPEIMSKFYGESEERLREIFKDAEEN 304 Query: 110 ---PVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + +++ A P + Sbjct: 305 APSIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALD-- 362 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK--------LAAYIVQRME 206 P L + +++ +PD ++++ R + ++ + ++++ Sbjct: 363 -PALRRPGRFDREIEVGVPDKKGRKEILQ--IHTRGMPLEPDYDKVTVLKVLRELLRKET 419 Query: 207 RSLVFAEKLVDKMDNL 222 ++L+++++ Sbjct: 420 FDEERLKRLIERVEEA 435 Score = 39.7 bits (92), Expect = 0.33, Method: Composition-based stats. Identities = 38/205 (18%), Positives = 73/205 (35%), Gaps = 47/205 (22%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTRKP 110 P R V+L GP G+GK+ LA + +S + K + I R+ Sbjct: 580 PPRGVLLYGPPGTGKTLLAKAVATESEANFIGIRGPEVLSKWVGESEKRIREIFRKARQA 639 Query: 111 ----VLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL ++ I + +++ A P Sbjct: 640 APTVIFIDEIDAIAPARGSDMNRVTDRLINQLLTEMDGIEKNSGVVVIAATNRPDIIDPA 699 Query: 155 LPDLC----SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRME-RS 208 L L RL + + PD+ +++ R++ + K + + ++ E S Sbjct: 700 L--LRPGRFDRL-----ILVPAPDEKARLEILKVHT--RRVPLAKDVNLRELAKKTEGYS 750 Query: 209 LVFAEKLVDKMDNLAL-SRGMGITR 232 E LV AL + I++ Sbjct: 751 GADLEALVR---EAALIAMRRAISK 772 >gi|281357852|ref|ZP_06244338.1| AAA ATPase central domain protein [Victivallis vadensis ATCC BAA-548] gi|281315799|gb|EFA99826.1| AAA ATPase central domain protein [Victivallis vadensis ATCC BAA-548] Length = 455 Score = 49.8 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 45/193 (23%), Positives = 76/193 (39%), Gaps = 32/193 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 VIL GP G+GK+ LA + + S S R S + S+ + + + V ++ T Sbjct: 66 VILSGPPGTGKTSLAEVIARVSNSEFVRLSGVTSSVADVRKEIAQAVT---RRRINGRRT 122 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H + + + L+ A T + V L SR + V + Sbjct: 123 ILFVDEIHRFSRSQQDSLLPDVENGNVRLIGATTHNPQFYVVGA-LLSR---SLVFLLQP 178 Query: 173 PDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRME----RSLVFAEKLVDKMDNL 222 +D + ++ + AD R++ ++ A +I + E RSL E V D Sbjct: 179 LTEDDILTLLRRAVADPRSFPGRRVELEPDAAEFIARTCEGDGRRSLNALEIAVLTSDPG 238 Query: 223 ALSRGMGITRSLA 235 A +TR +A Sbjct: 239 A-DGVTRVTREVA 250 >gi|225021329|ref|ZP_03710521.1| hypothetical protein CORMATOL_01348 [Corynebacterium matruchotii ATCC 33806] gi|224945711|gb|EEG26920.1| hypothetical protein CORMATOL_01348 [Corynebacterium matruchotii ATCC 33806] Length = 451 Score = 49.8 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 65/176 (36%), Gaps = 30/176 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRF-------------SNIAKSLDSILIDTRKPVLL 113 VIL GP G+GK+ +A++ S + + I ++ ++ + + Sbjct: 67 VILYGPPGTGKTTIASLISQATARKFVGLSALNSGVKEVRAVIDQARRDLIQGMSTVLFI 126 Query: 114 EDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +++ L + + LL+ A T S+ V P L SR + +VK+ Sbjct: 127 DEVHRFSKTQQDALL----AAVENRVVLLVAATTENPSFSVVAP-LLSR---SLIVKLES 178 Query: 173 PDDDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 DD + V+ + D R + +V S A + + ++ A Sbjct: 179 LDDASVRAVLRRALVDERGLGGRITASDAAIDQLVA---LSGGDARRSLTYLEAAA 231 >gi|308180384|ref|YP_003924512.1| crossover junction endodeoxyribonuclease [Lactobacillus plantarum subsp. plantarum ST-III] gi|308045875|gb|ADN98418.1| crossover junction endodeoxyribonuclease [Lactobacillus plantarum subsp. plantarum ST-III] Length = 420 Score = 49.8 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 33/193 (17%), Positives = 69/193 (35%), Gaps = 30/193 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP--------VLLEDIDL 118 +IL GP G+GK+ LA I + + + A + + + +L+++I Sbjct: 44 LILWGPPGTGKTSLAQIIASQDDYPFVAFTASTENKAQLTKAIAQYPEQSFVLLIDEIHR 103 Query: 119 L--DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 + D L ++ N +++ T +P + SR + + D Sbjct: 104 MTKTLQDFLLPYLEN------GHVMLIGSTTENPIMSIVPAIRSR---CQIFEFQPLSDT 154 Query: 177 FLEKVIVKM------FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 +E + + D Q +D K I E L A +++ + A+ + I Sbjct: 155 DIEIALRRAVTDIYNLTDDQ--VDAKALNLIAISAEGDLRIALNILETL--HAIDQKQ-I 209 Query: 231 TRSLAAEVLKETQ 243 T + ++ Sbjct: 210 TVAAVQHFAQQQH 222 >gi|268315897|ref|YP_003289616.1| AAA ATPase central domain-containing protein [Rhodothermus marinus DSM 4252] gi|262333431|gb|ACY47228.1| AAA ATPase central domain protein [Rhodothermus marinus DSM 4252] Length = 458 Score = 49.8 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 60/170 (35%), Gaps = 24/170 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +I GP G+GK+ LA I + SR+ + A I E + L T L Sbjct: 56 LIFYGPPGTGKTTLARIIARTSRAHFTALNAVLAGVKDIRDAIEAAQERL-RLHQQRTIL 114 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N + + + + A T + V P L SR + V ++ Sbjct: 115 FIDEVHRFNKAQQDALLPHVENGTVIFIGATTENPYFEVIKP-LVSR---SRVFELKPLT 170 Query: 175 DDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 + L ++ + AD R + +D + +++ ++ Sbjct: 171 PEHLRRIAEQALADPERGYGRRNVVVDPEALDHLIDVANGDARSLLNALE 220 >gi|193216561|ref|YP_001999803.1| recombination factor protein RarA [Mycoplasma arthritidis 158L3-1] gi|193001884|gb|ACF07099.1| ATPase, related to the helicase subunit of the Holliday junction resolvase [Mycoplasma arthritidis 158L3-1] Length = 402 Score = 49.8 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 39/209 (18%), Positives = 84/209 (40%), Gaps = 17/209 (8%) Query: 41 DDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD--KSRSTRFSNIAK 98 DD + + + I + R I G G+GK+ ++ I + K F+ + Sbjct: 15 DDFVCNDSQRFLFEKIIANDD--FRSFIFYGKPGTGKTTISYILASSLKVSFDYFNAAIE 72 Query: 99 SLDSIL--IDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156 + ++ + K +++++I L+ + + ++ I ++ T P + V P Sbjct: 73 KKEDLVAKLKLNKILIIDEIHRLNKDKQDI--LLPYIENDLITIYATTTENP-YFKVN-P 128 Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF--IDKKLAAYIVQRMERSLVFAEK 214 L SR +V+I P D L K + K+ + Q+ + ++ +I + A Sbjct: 129 ALRSR---CAIVEIKNPSIDDLSKQLKKIALNNQLDSNLSDEIYHFIASQSNGDYRSAIN 185 Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKETQ 243 +D + LS+ +T ++L Q Sbjct: 186 SLDLIST--LSKTKKLTLDEIKKILPAIQ 212 >gi|94497714|ref|ZP_01304281.1| transposase [Sphingomonas sp. SKA58] gi|94422763|gb|EAT07797.1| transposase [Sphingomonas sp. SKA58] Length = 249 Score = 49.8 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 22/112 (19%) Query: 67 VILVGPSGSGKSCLANI---------WS-------DKSRSTRFSNIAKSLDSIL--IDTR 108 +IL GP G GKS LA W D + + + +L++ + +D Sbjct: 78 LILFGPPGGGKSHLAAAIGLALIENGWRVLFARTSDLVQKLQVARRELALEAAITKLDKY 137 Query: 109 KPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 ++L+D+ + + + LF +I S S+L+TA W PD Sbjct: 138 HLLILDDLAYVAKDQAETSVLFELI-SARYERKSMLITANQPFGEWNRIFPD 188 >gi|213401064|gb|ACJ47180.1| chromosomal replication initiation protein [Wolbachia endosymbiont of Coptotermes acinaciformis] Length = 135 Score = 49.8 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 14/101 (13%), Positives = 40/101 (39%), Gaps = 1/101 (0%) Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 P + SRL V I+ + ++ +++ + ++ + + Sbjct: 1 RSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQAKVEQMSMYVPDDVLEFLARNI 60 Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + ++ E ++K+ + +L G +T A+E L + + + Sbjct: 61 KSNIRELEGALNKVAHTSLI-GRSMTVESASETLADLLRSN 100 >gi|71894026|ref|YP_278134.1| chromosomal replication initiator protein [Mycoplasma synoviae 53] gi|71850814|gb|AAZ43423.1| chromosomal replication initiator protein [Mycoplasma synoviae 53] Length = 456 Score = 49.4 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 36/225 (16%), Positives = 83/225 (36%), Gaps = 41/225 (18%) Query: 31 SFPRCLG-ISRDDLLVHSAIEQAVRLIDSWPSWP---SRVVILVGPSGSGKSCLANIWSD 86 F + D+ + E A+ ++ + + + + L G SGSGKS L + ++ Sbjct: 114 DFGIKNKNYTFDNFFKSTFNELALEVLKNSLNETGEFNNIYFLCGKSGSGKSHLLSAIAN 173 Query: 87 KSRSTRFSNIAKSLDSILIDTRKPVLLE--------------DIDLLDFND--------- 123 +++ S + ++ + VL E + D++ F+D Sbjct: 174 EAKKQNKSCVYIQ-PALFSNKITQVLFENNSLTKQELNNFFVNADVILFDDFDDYGEGKK 232 Query: 124 ----TQLFHII-NSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178 + +II N I+ +++ + + + L +RL + V I P Sbjct: 233 KGTKNFILNIIENRINLNKLTIIASKTEYKKLKSLFDEKLFNRLGSGIKVSIESPKLSER 292 Query: 179 EKVIV----KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 + + K+F +D++ +I+ S ++V+ + Sbjct: 293 KSFLQFLNPKLFE----VLDEQSIEFILFNTSNSNWNLIQIVNNL 333 >gi|121998175|ref|YP_001002962.1| recombination factor protein RarA [Halorhodospira halophila SL1] gi|121589580|gb|ABM62160.1| Recombination protein MgsA [Halorhodospira halophila SL1] Length = 427 Score = 49.4 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 55/151 (36%), Gaps = 31/151 (20%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL-LDFNDTQ 125 +IL GP GSGK+ LA + ++ + + S + + + + E DL T Sbjct: 46 MILWGPPGSGKTTLAGLVAEHAEARFL---TLSAVAAGVREIRAAMAEATDLWQAGRRTV 102 Query: 126 LF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKIS 171 LF H N Q D +++ T L SR A V + Sbjct: 103 LFVDEVHRFNKAQQDAFLPHVEDGTVVFVGATTENPSFELNKA---LLSR---ARVYMLR 156 Query: 172 LPDDDFLEKVIVKMFAD-------RQIFIDK 195 D+ L ++ + +D RQ+ + + Sbjct: 157 ALDEAALTNLLERALSDPERGLGGRQLQVTE 187 >gi|145635701|ref|ZP_01791396.1| predicted ATPase [Haemophilus influenzae PittAA] gi|145267024|gb|EDK07033.1| predicted ATPase [Haemophilus influenzae PittAA] Length = 446 Score = 49.4 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 43/202 (21%), Positives = 82/202 (40%), Gaps = 33/202 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI-----------LIDTRKPVLL 113 +IL GP G+GK+ LA I + + + R S + + I L D + + + Sbjct: 53 MILWGPPGTGKTTLAEIIAQRINAEVERISAVTSGIKEIREAIERAKQNRLADRKTILFV 112 Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++ + + F HI + + + + A T S+ + L SR A V + Sbjct: 113 DEVHRFNKSQQDAFLPHI-----EDGTVIFIGATTENPSFELNNA-LLSR---ARVYVLK 163 Query: 172 LPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA- 223 +E+V+ + D R + +++ L + + + A ++ M ++A Sbjct: 164 SLTTAEIEQVLQQAIEDPERGLGKERLILEENLLQVLGEYVNGDARLALNCLELMVDMAE 223 Query: 224 -LSRGMGITRSLAAEVLKETQQ 244 G I R+L EVL E Q Sbjct: 224 ETENGKKIDRTLLKEVLGERQA 245 >gi|300767164|ref|ZP_07077076.1| crossover junction endodeoxyribonuclease [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300494983|gb|EFK30139.1| crossover junction endodeoxyribonuclease [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 422 Score = 49.4 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 33/193 (17%), Positives = 69/193 (35%), Gaps = 30/193 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP--------VLLEDIDL 118 +IL GP G+GK+ LA I + + + A + + + +L+++I Sbjct: 46 LILWGPPGTGKTSLAQIIASQDDYPFVAFTASTENKAQLTKAIAQYPEQSFVLLIDEIHR 105 Query: 119 L--DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 + D L ++ N +++ T +P + SR + + D Sbjct: 106 MTKTLQDFLLPYLEN------GHVMLIGSTTENPIMSIVPAIRSR---CQIFEFQPLSDT 156 Query: 177 FLEKVIVKM------FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 +E + + D Q +D K I E L A +++ + A+ + I Sbjct: 157 DIEIALRRAVTDIYNLTDDQ--VDAKALNLIAISAEGDLRIALNILETL--HAIDQKQ-I 211 Query: 231 TRSLAAEVLKETQ 243 T + ++ Sbjct: 212 TVAAVQHFAQQQH 224 >gi|47076495|dbj|BAD18155.1| transposase B of IS643 [Bacillus halodurans] Length = 255 Score = 49.4 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 49/112 (43%), Gaps = 22/112 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDTR 108 +IL+GP G GK+ +A ++ F ++ ++ I Sbjct: 105 LILLGPPGIGKTHIAIGLGLEAVYRGFHVYFATMGELVQLLKSEEYLNKSKVQLKRIRNA 164 Query: 109 KPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 V+++D+ + + + FH+IN +++ SS+++T+ P WG + D Sbjct: 165 DLVIIDDLMYMAMDQREANLFFHLINHLYER-SSIILTSNKSPEEWGHLIGD 215 >gi|260906747|ref|ZP_05915069.1| recombination factor protein RarA [Brevibacterium linens BL2] Length = 421 Score = 49.4 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 70/169 (41%), Gaps = 24/169 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSR------STRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120 ++L GP G GK+ +A + ++++ S FS +A+ L + K + +L Sbjct: 48 MVLWGPPGCGKTTIARLLAERTNLVFESVSATFSGVAE-LRKVFQSAAKRREIGQGTMLF 106 Query: 121 FNDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 ++ H N + + +L+ A T S+ + L SR V + Sbjct: 107 VDEI---HRFNRAQQDSFLPYVEDGTIVLVGATTENPSFELNSA-LLSR---CQVFVLKR 159 Query: 173 PDDDFLEKVIVKM--FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 D++ L +I + +R++ +D + +V + + L++++ Sbjct: 160 LDEEALTTLITRAEETTERELPLDAQARHALVAMADGDGRYLLNLIEQL 208 >gi|15616528|ref|NP_244834.1| transposase (23) [Bacillus halodurans C-125] gi|10176591|dbj|BAB07685.1| transposase (23) [Bacillus halodurans C-125] gi|47076480|dbj|BAD18145.1| transposase B of IS643 [Bacillus halodurans] Length = 254 Score = 49.4 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 49/112 (43%), Gaps = 22/112 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDTR 108 +IL+GP G GK+ +A ++ F ++ ++ I Sbjct: 104 LILLGPPGIGKTHIAIGLGLEAVYRGFHVYFATMGELVQLLKSEEYLNKSKVQLKRIRNA 163 Query: 109 KPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 V+++D+ + + + FH+IN +++ SS+++T+ P WG + D Sbjct: 164 DLVIIDDLMYMAMDQREANLFFHLINHLYER-SSIILTSNKSPEEWGHLIGD 214 >gi|156085956|ref|XP_001610387.1| 26S protease regulatory subunit 6A [Babesia bovis T2Bo] gi|154797640|gb|EDO06819.1| 26S protease regulatory subunit 6A, putative [Babesia bovis] Length = 418 Score = 49.4 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 38/183 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 198 PPKGVLMHGPPGTGKTLLARACAAQTKATFVKLAGPQLVQMFIGDGAKMVRDAFSLAKEK 257 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151 +++ID + + ++N + D ++ A P + Sbjct: 258 SPTIIFIDEIDAIGTKRFDSELSGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRPDTL 317 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL +++ P++D ++ R++ + + + R Sbjct: 318 DPAL--LRSGRLD--RKIELPHPNEDARAHIMQ--IHSRKMNVHPDVNFKELARSTEDFN 371 Query: 211 FAE 213 A+ Sbjct: 372 GAQ 374 >gi|18129344|emb|CAC87658.1| DnaA protein [Wolbachia endosymbiont of Kalotermes flavicollis] Length = 129 Score = 49.4 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 14/99 (14%), Positives = 40/99 (40%), Gaps = 1/99 (1%) Query: 148 PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER 207 P + SRL V I+ + ++ +++ + ++ + ++ Sbjct: 1 PSDLDGVEERIKSRLGWGLVADINETTFELRLGILQAKVEQMSMYVPDDVLEFLARNIKS 60 Query: 208 SLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 ++ E ++K+ + +L G +T A+E L + + + Sbjct: 61 NIRELEGALNKVAHTSLI-GRSMTVESASETLADLLRSN 98 >gi|224476725|ref|YP_002634331.1| recombination factor protein RarA [Staphylococcus carnosus subsp. carnosus TM300] gi|222421332|emb|CAL28146.1| conserved hypothetical protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 426 Score = 49.4 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 28/171 (16%), Positives = 64/171 (37%), Gaps = 31/171 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117 +I GP G GK+ +A + ++ + ++ ++ + + +LL++I Sbjct: 43 MIFYGPPGIGKTSIAKAIAGSTQFKFRQLNAVTNTKKDMQMVVEEAKMSGQVILLLDEIH 102 Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 L D L H+ N +L+ T + P + SR A + ++ Sbjct: 103 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYAL 151 Query: 174 DDDFLEKVIVKMFA--DRQIF-----IDKKLAAYIVQRMERSLVFAEKLVD 217 D++ + + + + DR + ID Y + + + A ++ Sbjct: 152 DENDIRIALERALSEKDRGLADYNVNIDDDALQYFSTQSQGDVRAALNALE 202 >gi|58696886|ref|ZP_00372398.1| chromosomal replication initiator protein DnaA [Wolbachia endosymbiont of Drosophila simulans] gi|58536901|gb|EAL60087.1| chromosomal replication initiator protein DnaA [Wolbachia endosymbiont of Drosophila simulans] Length = 220 Score = 49.4 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 5/58 (8%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVV-----ILVGPSGSGKSCLANIWS 85 P + D+ +V E A ++ L G G GK+ L + + Sbjct: 126 PLDPRFTFDNFVVGKPNELAFTAAKRVAESIDPILGSNPLFLYGGVGLGKTHLMHAIA 183 >gi|326940341|gb|AEA16237.1| primosomal protein DnaI [Bacillus thuringiensis serovar chinensis CT-43] Length = 267 Score = 49.4 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 51/125 (40%), Gaps = 24/125 (19%) Query: 52 AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------- 104 AV+ + ++ W ++L G G+GK+ LA ++ + + +S+ +L Sbjct: 103 AVKYVKTFKEWDGESLMLWGDPGNGKTHLAAAIVNELSKKGYIVVFQSVPELLQRIRRTF 162 Query: 105 --------------IDTRKPVLLEDIDL---LDFNDTQLFHIINSIHQYDSSLLMTARTF 147 + ++L+DI ++ + +LF+II+ ++ + L T+ Sbjct: 163 NSENKENETQIMRALLECDLLILDDIGAEKTTEWVEEKLFNIIDGRYRKELPTLYTSNLE 222 Query: 148 PVSWG 152 P Sbjct: 223 PKELK 227 >gi|319943868|ref|ZP_08018149.1| replication-associated recombination protein A [Lautropia mirabilis ATCC 51599] gi|319743101|gb|EFV95507.1| replication-associated recombination protein A [Lautropia mirabilis ATCC 51599] Length = 490 Score = 49.4 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 62/171 (36%), Gaps = 27/171 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL--LDFNDT 124 +IL GP G GK+ LA + ++ + A I + +E + T Sbjct: 85 MILWGPPGVGKTTLARLTANAFGHEFIALSAVFSGVKDIRS----AMEQAERNLQAGRHT 140 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + L+ A T S+ V L SR A V + Sbjct: 141 ILFIDEIHRFNKAQQDALLPYAESGLITLIGATTENPSFEVNSA-LLSR---AQVYVLKS 196 Query: 173 PDDDFLEKVIVKMFADR--QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 DD+ L+ ++ + A ++ + +V + A ++++ ++ Sbjct: 197 LDDEELKALVERARARALPELEFEPAAIDTLVGYAD---GDARRMLNLLEQ 244 >gi|241894974|ref|ZP_04782270.1| crossover junction endodeoxyribonuclease [Weissella paramesenteroides ATCC 33313] gi|241871692|gb|EER75443.1| crossover junction endodeoxyribonuclease [Weissella paramesenteroides ATCC 33313] Length = 429 Score = 49.4 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 58/138 (42%), Gaps = 22/138 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117 +IL GP G+GK+ +A+ + ++ + R N A + + +LL++I Sbjct: 42 MILYGPPGTGKTSIASAIAGSTKYAFRILNAATDTKKDLQIVAEEAKMSGTVVLLLDEIH 101 Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 LD D L H+ + +L+ A T + LP + SR + ++ + Sbjct: 102 RLDKTKQDFLLPHL-----ESGRIVLIGATTENPYLTI-LPAIRSR---TQIFEVKPLSE 152 Query: 176 DFLEKVIVKMFAD--RQI 191 ++ I + AD R + Sbjct: 153 ADMQMAIARALADKERGL 170 >gi|119356781|ref|YP_911425.1| recombination factor protein RarA [Chlorobium phaeobacteroides DSM 266] gi|119354130|gb|ABL65001.1| Recombination protein MgsA [Chlorobium phaeobacteroides DSM 266] Length = 446 Score = 49.4 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 62/176 (35%), Gaps = 29/176 (16%) Query: 65 RVVILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKP-----------V 111 +I GP GSGK+ LA I + + + S I + + + Sbjct: 62 PSMIFWGPPGSGKTTLAGICASSLQFGFEKLSAIDSGVKEVRKALENAEKARRRGVRTML 121 Query: 112 LLEDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 +++I + L H I + +L+ A T S+ V L SR A V + Sbjct: 122 FIDEIHRFNKAQQDTLLHAI----EEGLVVLVGATTENPSFEVNAA-LLSR---AQVYIL 173 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLA----AYIVQRMERSLVFAEKLVDKMDNL 222 + D +E VI + + ++V+ S A K ++ ++ Sbjct: 174 NPLGDREIEAVINHALTSDTVLSALSVVLEDPDFLVRF---SAGDARKALNALEAA 226 >gi|149173567|ref|ZP_01852197.1| hypothetical protein PM8797T_22523 [Planctomyces maris DSM 8797] gi|148847749|gb|EDL62082.1| hypothetical protein PM8797T_22523 [Planctomyces maris DSM 8797] Length = 505 Score = 49.4 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 62/160 (38%), Gaps = 28/160 (17%) Query: 67 VILVGPSGSGKSC----LANIWSDKS----RSTRFSNIAKSLDSILIDTRKPVLLEDIDL 118 ++ GP G+GK+ L+ + + + + + + + V+LED+DL Sbjct: 292 ILFYGPPGTGKTHTIHYLSRTLPGHTTLLISAEQVGMLDEYMTLARLLQPSIVVLEDVDL 351 Query: 119 LDFN--------DTQLFH-IINSIH----QYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 + + + L + ++N + + + ++T P + L SR Sbjct: 352 IARDRNHMESPCEEVLLNKLLNEMDGLKPEAEILFILTTNR-PETLEAA---LASRPGRV 407 Query: 166 -TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 ++ LPD + K+I + + ++ +++R Sbjct: 408 DQAIEFPLPDTEGRRKLI--HLYSEGVTVGAEVIDDVLRR 445 >gi|83312581|ref|YP_422845.1| recombination factor protein RarA [Magnetospirillum magneticum AMB-1] gi|82947422|dbj|BAE52286.1| ATPase related to the helicase subunit of the Holliday junction resolvase [Magnetospirillum magneticum AMB-1] Length = 430 Score = 49.4 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 51/146 (34%), Gaps = 26/146 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID--LLDFNDT 124 VIL GP G GK+ +A + +++ F ++ + + + + + T Sbjct: 51 VILWGPPGCGKTTIARLLAERVG-LYFEPLSAVFSGVADLRK---VFDAAEKRKQTGRST 106 Query: 125 QLF----HIINSIHQYD-------SSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N Q ++++ T L SR V+ + Sbjct: 107 LLFVDEIHRFNRAQQDGFLPYVENGTVVLVGATTENPSFELNGA---LLSR---CQVLVL 160 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKK 196 DD LE +++K AD + Sbjct: 161 HRLDDGALEDLLLKAEADLGRTLPLD 186 >gi|47076489|dbj|BAD18151.1| transposase B of IS643 [Bacillus halodurans] Length = 255 Score = 49.4 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 49/112 (43%), Gaps = 22/112 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDTR 108 +IL+GP G GK+ +A ++ F ++ ++ I Sbjct: 105 LILLGPPGIGKTHIAIGLGLEAVYRGFHVYFATMGELVQLLKSEEYLNKSKVQLKRIRNA 164 Query: 109 KPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 V+++D+ + + + FH+IN +++ SS+++T+ P WG + D Sbjct: 165 DLVIIDDLMYMAMDQREANLFFHLINHLYER-SSIILTSNKSPEEWGHLIGD 215 >gi|312139551|ref|YP_004006887.1| ATPase AAA [Rhodococcus equi 103S] gi|311888890|emb|CBH48203.1| putative AAA ATPase [Rhodococcus equi 103S] Length = 468 Score = 49.4 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 73/173 (42%), Gaps = 24/173 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDTRKPVL--------L 113 V+L GP G+GK+ LA++ S + + S K + ++ R+ +L + Sbjct: 82 VLLYGPPGTGKTTLASLISGATGRKFEALSALSAGVKEVRGVIELARRRLLQGEQTVLFI 141 Query: 114 EDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +++ L + + LL+ A T S+ V P L SR + V+++ Sbjct: 142 DEVHRFSKTQQDALL----AAVENRIVLLVAATTENPSFSVVSP-LLSR---SLVLQLQS 193 Query: 173 PDDDFLEKVIVKMFAD-RQIFIDKKLAAYIVQRMER-SLVFAEKLVDKMDNLA 223 D + VI + AD R + ++A ++ + R + A + + ++ A Sbjct: 194 LTSDDIRLVIERARADERGLGGSVEIADDALEHLVRLAAGDARRALTALEAAA 246 >gi|192360498|ref|YP_001983014.1| ATPase, AAA family domain-containing protein [Cellvibrio japonicus Ueda107] gi|190686663|gb|ACE84341.1| ATPase, AAA family domain protein [Cellvibrio japonicus Ueda107] Length = 447 Score = 49.4 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 38/200 (19%), Positives = 78/200 (39%), Gaps = 28/200 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA ++++++ + RF ++ + + E + T L Sbjct: 52 MILWGPPGVGKTSLAKLFAEQANA-RFETLSAVMSGVKEIRAAVAAAEQERISTRRKTIL 110 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N + + + + A T S+ + L SR V + Sbjct: 111 FVDEVHRFNKSQQDAFLPYVEDGTFIFIGATTENPSFELNNA-LLSR---CRVYVLRGLQ 166 Query: 175 DDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA-LSR 226 + L +V+ + D + +D ++ + Q + A K ++ ++ A L++ Sbjct: 167 PEQLIQVMRQALTDAERGLGKSGLEVDDEVLNSLAQAAD---GDARKSLNLLEIAADLAQ 223 Query: 227 GMGITRSLAAEVLKETQQCD 246 R + +VL+E D Sbjct: 224 EQEGVRVINEDVLREVLAAD 243 >gi|254556440|ref|YP_003062857.1| recombination factor protein RarA [Lactobacillus plantarum JDM1] gi|254045367|gb|ACT62160.1| recombination factor protein RarA [Lactobacillus plantarum JDM1] Length = 420 Score = 49.4 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 33/193 (17%), Positives = 69/193 (35%), Gaps = 30/193 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP--------VLLEDIDL 118 +IL GP G+GK+ LA I + + + A + + + +L+++I Sbjct: 44 LILWGPPGTGKTSLAQIIASQDDYPFVAFNASTENKAQLTKAIAQYPEQSFVLLIDEIHR 103 Query: 119 L--DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 + D L ++ N +++ T +P + SR + + D Sbjct: 104 MTKTLQDFLLPYLEN------GHVMLIGSTTENPIMSIVPAIRSR---CQIFEFQPLSDT 154 Query: 177 FLEKVIVKM------FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 +E + + D Q +D K I E L A +++ + A+ + I Sbjct: 155 DIEIALRRAVTDIYNLTDDQ--VDAKALNLIAISAEGDLRIALNILETL--HAIDQKQ-I 209 Query: 231 TRSLAAEVLKETQ 243 T + ++ Sbjct: 210 TVAAVQHFAQQQH 222 >gi|218883356|ref|YP_002427738.1| Cell division control protein 48, AAA family [Desulfurococcus kamchatkensis 1221n] gi|218764972|gb|ACL10371.1| Cell division control protein 48, AAA family [Desulfurococcus kamchatkensis 1221n] Length = 746 Score = 49.4 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 22/163 (13%), Positives = 58/163 (35%), Gaps = 33/163 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP G+GK+ LA +++ + + K + + Sbjct: 221 PPKGILLYGPPGTGKTLLAKALANEIGAYFVTINGPEIMSKFYGESEERLRKIFEEAQAN 280 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + + +++ A P + Sbjct: 281 APAVIFIDEIDSIAPKREEVTGEVEKRVVAQLLTLMDGLKERGKVIVIGATNRPDALD-- 338 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L + ++I PD +++ R + + + + Sbjct: 339 -PALRRPGRFDREIEIPPPDKRARREILAVH--TRNMPLAEDV 378 Score = 39.0 bits (90), Expect = 0.65, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 18/31 (58%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF 93 P + ++L GP G+GK+ LA + +S + Sbjct: 497 PPKGILLFGPPGTGKTLLAKAVATESGANFI 527 >gi|126207922|ref|YP_001053147.1| recombination factor protein RarA [Actinobacillus pleuropneumoniae L20] gi|126096714|gb|ABN73542.1| hypothetical protein APL_0438 [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 446 Score = 49.4 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 41/203 (20%), Positives = 73/203 (35%), Gaps = 35/203 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I GP G+GK+ LA I + + R S + + I + ++ T Sbjct: 52 MIFWGPPGTGKTTLAEIIAHHFDAEVERLSAVTSGVKEIREAIERA----KLNRQTGRRT 107 Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N Q D +++ T L SR A + + Sbjct: 108 LLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNA---LLSR---AKIYIL 161 Query: 171 SLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + +V+ D R + +I+ + + + FA ++ M ++A Sbjct: 162 KPLQAVEIAQVLTNALYDKERGLGNESYYIEDNVIELLADYVNGDARFALNCLELMSDMA 221 Query: 224 --LSRGMGITRSLAAEVLKETQQ 244 S+G + ++L AEVL E Q Sbjct: 222 EISSQGKRLNKALLAEVLGERQA 244 >gi|3661499|gb|AAC61729.1| OrfB [Escherichia coli] Length = 195 Score = 49.4 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 30/145 (20%), Positives = 50/145 (34%), Gaps = 25/145 (17%) Query: 32 FPRCLGISRDDLL-VHSAIEQAVRLIDSWPSW--PSRVVILVGPSGSGKSCLANIWSDKS 88 P +S D V R + W V+L G SG GKS LA D Sbjct: 10 LPVAKTLSEYDFSQVPELNGAQFRQLCETTDWVDAGENVLLFGASGLGKSHLAAAIVDGV 69 Query: 89 RSTRFSNIAKSLDSILIDTRKP------------------VLLEDIDLLDFNDTQ---LF 127 + S +L + RK ++++D+ + + + LF Sbjct: 70 VGQGYRARFYSAGELLQELRKARAQLKLNELLLKLDRYRVIVVDDLGYVKRDSAETGVLF 129 Query: 128 HIINSIHQYDSSLLMTARTFPVSWG 152 +I ++ SL++T+ WG Sbjct: 130 ELIAHRYERG-SLVITSNHPFSMWG 153 >gi|16273484|ref|NP_439735.1| recombination factor protein RarA [Haemophilus influenzae Rd KW20] gi|1175611|sp|P45262|RARA_HAEIN RecName: Full=Replication-associated recombination protein A gi|1574435|gb|AAC23238.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20] Length = 446 Score = 49.4 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 42/206 (20%), Positives = 76/206 (36%), Gaps = 41/206 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI-----------LIDTRKPVLL 113 +I GP G+GK+ LA I + + + R S + + I L D + + + Sbjct: 53 MIFWGPPGTGKTTLAEIIAQRINAEVERISAVTSGIKEIREAIDRAKQNRLADRKTILFV 112 Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVK 169 +++ + + F HI + + + + T L SR A V Sbjct: 113 DEVHRFNKSQQDAFLPHI-----EDGTVIFIGATTENPSFELNNA---LLSR---ARVYV 161 Query: 170 ISLPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERS----LVFAEKLVDK 218 + +E+V+ + D R + +++ L + + + L E +VD Sbjct: 162 LKSLTTAEIEQVLQQAVEDPKRGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDM 221 Query: 219 MDNLALSRGMGITRSLAAEVLKETQQ 244 D G I R+L EVL E Q Sbjct: 222 ADET--ENGKKIDRTLLKEVLGERQA 245 >gi|78186607|ref|YP_374650.1| recombination factor protein RarA [Chlorobium luteolum DSM 273] gi|78166509|gb|ABB23607.1| Recombination protein MgsA [Chlorobium luteolum DSM 273] Length = 457 Score = 49.4 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 70/177 (39%), Gaps = 27/177 (15%) Query: 65 RVVILVGPSGSGKSCLANIWSDK--SRSTRFSNIAKSLDSI-----------LIDTRKPV 111 +I GP GSGK+ LA I + R + S I + + R + Sbjct: 62 PSMIFWGPPGSGKTTLAEICASALDFRFEQLSAIESGVKDVRRVLENAASSRARGIRTLL 121 Query: 112 LLEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 +++I + + L H I + +L+ A T S+ + L SR++ T+ + Sbjct: 122 FIDEIHRFNKSQQDTLLHAI----EQGVVVLIGATTENPSFEINAA-LLSRMQVYTLKSL 176 Query: 171 SLPDDDFL--EKVIVK-MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 D + + V +F DR + ++ ++++ S A K ++ ++ L Sbjct: 177 GPEDIRLVVTRALSVDPLFRDRHVQVED--MEFLLRF---SGGDARKALNALEAAFL 228 >gi|91778173|ref|YP_553381.1| putative transposase-associated ATP- binding protein [Burkholderia xenovorans LB400] gi|91783140|ref|YP_558346.1| putative IS21 transposase-associated ATP- binding protein [Burkholderia xenovorans LB400] gi|91785696|ref|YP_560902.1| putative insertion sequence ATP-binding protein [Burkholderia xenovorans LB400] gi|91687094|gb|ABE30294.1| Putative IS21 transposase-associated ATP- binding protein [Burkholderia xenovorans LB400] gi|91689650|gb|ABE32850.1| putative insertion sequence ATP-binding protein [Burkholderia xenovorans LB400] gi|91690833|gb|ABE34031.1| Putative transposase-associated ATP- binding protein [Burkholderia xenovorans LB400] Length = 272 Score = 49.4 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 47/134 (35%), Gaps = 23/134 (17%) Query: 45 VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL 104 V A A+ +SW ++L GP G+GKS L + + + ++ Sbjct: 87 VSKAHVTALATGESWLE-KGATILLFGPPGAGKSHLGSAIGHALIDAGYRVLFTRTSELV 145 Query: 105 ------------------IDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMT 143 +D ++L+D+ + + LF +I + SLL+T Sbjct: 146 QKLQAARQSLQLPSALAKLDRFDLIILDDLSYARKDQAETSVLFELI-AERYERKSLLIT 204 Query: 144 ARTFPVSWGVCLPD 157 A W PD Sbjct: 205 ANQPFSGWNDVFPD 218 >gi|73662441|ref|YP_301222.1| recombination factor protein RarA [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494956|dbj|BAE18277.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 427 Score = 49.4 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 33/197 (16%), Positives = 76/197 (38%), Gaps = 33/197 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117 +I GP G GK+ +A S ++ + ++ ++ + + +LL++I Sbjct: 43 MIFYGPPGIGKTSIAKAISGSTQFKFRQLNAVTNTKKDMQLIVEEAKMSGQVILLLDEIH 102 Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 L D L H+ N +L+ T + P + SR A + ++ Sbjct: 103 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 151 Query: 174 DDDFLEKVIVKMFAD--RQIF-----IDKKLAAYIVQRMERSLVFAEKLVDK--MDNLAL 224 D++ + + + D R + +D+ AY + + + A ++ + + + Sbjct: 152 DENDVRVSLDRALNDSERGLASYNPKVDEDAMAYFTTQSQGDVRSALNALELAVLSSENI 211 Query: 225 SRGMGITRSLAAEVLKE 241 + IT A + L++ Sbjct: 212 DQQRHITLQDAKDCLQK 228 >gi|229061576|ref|ZP_04198920.1| Prophage LambdaBa02, DNA replication protein DnaC [Bacillus cereus AH603] gi|228717810|gb|EEL69460.1| Prophage LambdaBa02, DNA replication protein DnaC [Bacillus cereus AH603] Length = 218 Score = 49.0 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 54/130 (41%), Gaps = 24/130 (18%) Query: 47 SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL-- 104 +A + A + ++ + W +++ G G+GK+ LA +++ F + +S+ +L Sbjct: 50 TAGQIAKKYVNEFKKWNGESLMIWGEPGNGKTHLAAAIANELSKQGFIVVFQSVPELLQR 109 Query: 105 -------------------IDTRKPVLLEDIDL---LDFNDTQLFHIINSIHQYDSSLLM 142 + ++L+DI ++ + +LF++I+ ++ + L Sbjct: 110 IRSTFNSDNKENETQIMRALLECDLLILDDIGAEKTTEWVEEKLFNVIDGRYRKELPTLY 169 Query: 143 TARTFPVSWG 152 T+ P Sbjct: 170 TSNLRPKELQ 179 >gi|18129346|emb|CAC87659.1| DnaA protein [Wolbachia endosymbiont of Folsomia candida] Length = 135 Score = 49.0 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 41/101 (40%), Gaps = 1/101 (0%) Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 P + SRL V I+ + ++ +++ K + ++ + + Sbjct: 1 RSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQAKIEQMNMYVPKDVLEFLARNI 60 Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + ++ E ++K+ + +L G +T A+E L + + + Sbjct: 61 KSNIRELEGALNKVAHTSLI-GRSMTVESASETLMDLLRSN 100 >gi|167039928|ref|YP_001662913.1| recombination factor protein RarA [Thermoanaerobacter sp. X514] gi|300915273|ref|ZP_07132587.1| AAA ATPase central domain protein [Thermoanaerobacter sp. X561] gi|307724748|ref|YP_003904499.1| AAA ATPase central domain-containing protein [Thermoanaerobacter sp. X513] gi|166854168|gb|ABY92577.1| AAA ATPase, central domain protein [Thermoanaerobacter sp. X514] gi|300888549|gb|EFK83697.1| AAA ATPase central domain protein [Thermoanaerobacter sp. X561] gi|307581809|gb|ADN55208.1| AAA ATPase central domain protein [Thermoanaerobacter sp. X513] Length = 443 Score = 49.0 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 32/138 (23%), Positives = 55/138 (39%), Gaps = 22/138 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA I ++ + S FS + + I K ++D + T Sbjct: 56 MILWGPPGVGKTTLAMIIANMTNSKFVTFSAVLSGIKEIKEIMAKA----ELDAMYGTRT 111 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +F H N + + +L+ A T S+ V L SR + V + Sbjct: 112 VVFIDEIHRFNKAQQDAFLPHVEKGNIILIGATTENPSFEVNSA-LLSR---SKVFVMKP 167 Query: 173 PDDDFLEKVIVKMFADRQ 190 ++ L ++ + D Q Sbjct: 168 LTEEDLLILLKRALKDEQ 185 >gi|323455979|gb|EGB11846.1| hypothetical protein AURANDRAFT_69630 [Aureococcus anophagefferens] Length = 801 Score = 49.0 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 66/164 (40%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R V+L GP GSGK+ +A ++++ + F SN+ K+ + + Sbjct: 232 PPRGVLLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 291 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + Q +++ A P S Sbjct: 292 SPAIIFIDEIDSIAPKRDKTNGEVERRIVSQLLTLMDGLKQRAHVVVIGATNRPNSMD-- 349 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PD++ ++ R + +D + Sbjct: 350 -PALR-RFGRFDREIDIGVPDENGRLEIF--RIHTRNMKLDDDV 389 >gi|91784018|ref|YP_559224.1| putative transposase-associated ATP- binding protein [Burkholderia xenovorans LB400] gi|91687972|gb|ABE31172.1| Putative transposase-associated ATP- binding protein [Burkholderia xenovorans LB400] Length = 280 Score = 49.0 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 49/150 (32%), Gaps = 30/150 (20%) Query: 29 FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS 88 F F +V A A+ +SW V+L GP G GKS L + Sbjct: 78 AFDFGAVP-------MVSKAHVTALATGESWLE-KGATVLLFGPPGVGKSHLGSAIGHAL 129 Query: 89 RSTRFSNIAKSLDSIL------------------IDTRKPVLLEDIDLLDFNDTQ---LF 127 + + ++ +D ++L+D+ + + LF Sbjct: 130 IDVGYRVLFTRTSELVQKLQAARQSLQLPCALAKLDRFDLIILDDLSYARKDQAETSVLF 189 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 +I + SLL+TA W PD Sbjct: 190 ELI-AERYERKSLLITANQPFSGWNDVFPD 218 >gi|326791959|ref|YP_004309780.1| MgsA AAA+ ATPase domain-containing protein [Clostridium lentocellum DSM 5427] gi|326542723|gb|ADZ84582.1| MgsA AAA+ ATPase domain-containing protein [Clostridium lentocellum DSM 5427] Length = 440 Score = 49.0 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 33/206 (16%), Positives = 77/206 (37%), Gaps = 45/206 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL-------- 118 +I GP G+GK+ +A + ++ +++ A + I +ED L Sbjct: 55 LIFYGPPGTGKTTIAKVIANTTKAHFIVLNATTSGKAEIIK----AVEDAKLQRSMTGKK 110 Query: 119 --LDFNDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168 + ++ H N + + +L+ A T + V L SR + V Sbjct: 111 TIIFIDEI---HRFNKAQQDALLPYTEDGTLVLIGATTENPYFEVNRA-LISR---SLVF 163 Query: 169 KISLPDDDFLEKVIVKMF--ADRQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 ++ + D ++K+I + +R + + + Y+ R+ A ++ ++ Sbjct: 164 ELKPLETDDVKKIIKEAVYNKERGLGAYKADVTEDALDYLAM---RTAGDARNALNAIEL 220 Query: 222 LALSRGMG------ITRSLAAEVLKE 241 ++ IT S+ E +++ Sbjct: 221 AVMTTSRSEDGIIHITISVLEECVQK 246 >gi|296111080|ref|YP_003621461.1| chromosome segregation helicase (putative) [Leuconostoc kimchii IMSNU 11154] gi|295832611|gb|ADG40492.1| chromosome segregation helicase (putative) [Leuconostoc kimchii IMSNU 11154] Length = 428 Score = 49.0 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 77/197 (39%), Gaps = 31/197 (15%) Query: 67 VILVGPSGSGKSCLANIWS--DKSRSTRFSNIAKSLDSILIDTRKP-------VLLEDID 117 +IL GP G+GK+ +A+ + K + S + I + +LL++I Sbjct: 42 MILYGPPGTGKTSIASAIAGSSKYAFRMLNAATDSQKDLQIVAEEAKMSGTVVLLLDEIH 101 Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 L+ D L H+ + S +L+ A T V P + SR + +++ + Sbjct: 102 RLNKVKQDFLLPHL-----ESGSIILIGATTENPYINVT-PAIRSR---TQIFQVNPLTE 152 Query: 176 DFLEKVIVKMFADRQIFIDK---KLAAYIVQRMERSLV-FAEKLVDKMDNLALSRGMG-- 229 ++ IV+ AD++ + + L + + R+ ++ ++ LS Sbjct: 153 ADIQAAIVRALADKKNGLGEYNVMLEDNAMSHLSRATNGDLRSALNGLELAVLSTKPAND 212 Query: 230 -----ITRSLAAEVLKE 241 IT + E ++ Sbjct: 213 DNIIHITLPIIEETVQR 229 >gi|297544999|ref|YP_003677301.1| AAA ATPase central domain-containing protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842774|gb|ADH61290.1| AAA ATPase central domain protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 443 Score = 49.0 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 32/138 (23%), Positives = 55/138 (39%), Gaps = 22/138 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA I ++ + S FS + + I K ++D + T Sbjct: 56 MILWGPPGVGKTTLAMIIANMTNSKFVTFSAVLSGIKEIKEIMAKA----ELDAMHGTRT 111 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +F H N + + +L+ A T S+ V L SR + V + Sbjct: 112 VVFIDEIHRFNKAQQDAFLPHVEKGNIILIGATTENPSFEVNSA-LLSR---SKVFVMKP 167 Query: 173 PDDDFLEKVIVKMFADRQ 190 ++ L ++ + D Q Sbjct: 168 LTEEDLLILLKRALKDEQ 185 >gi|305681055|ref|ZP_07403862.1| recombination factor protein RarA [Corynebacterium matruchotii ATCC 14266] gi|305659260|gb|EFM48760.1| recombination factor protein RarA [Corynebacterium matruchotii ATCC 14266] Length = 451 Score = 49.0 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 65/176 (36%), Gaps = 30/176 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRF-------------SNIAKSLDSILIDTRKPVLL 113 VIL GP G+GK+ +A++ S + + I ++ ++ + + Sbjct: 67 VILYGPPGTGKTTIASLISQATARKFVGLSALNSGVKEVRAVIDQARRDLIQGMSTVLFI 126 Query: 114 EDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +++ L + + LL+ A T S+ V P L SR + +VK+ Sbjct: 127 DEVHRFSKTQQDALL----AAVENRVVLLVAATTENPSFSVVAP-LLSR---SLIVKLES 178 Query: 173 PDDDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 DD + V+ + D R + +V S A + + ++ A Sbjct: 179 LDDASVRAVLRRALVDERGLGGRITASDAAIDQLVA---LSGGDARRSLTYLEAAA 231 >gi|150399923|ref|YP_001323690.1| AAA family ATPase [Methanococcus vannielii SB] gi|150012626|gb|ABR55078.1| AAA family ATPase, CDC48 subfamily [Methanococcus vannielii SB] Length = 781 Score = 49.0 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 37/220 (16%), Positives = 85/220 (38%), Gaps = 50/220 (22%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + V+L GP G+GK+ LA ++++ + + N+ K + + Sbjct: 210 PPKGVLLAGPPGTGKTLLAKAVANEAGANFYTINGPEIMSKYVGETEENLRKIFEEAEEN 269 Query: 107 TRKPVLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + ++ QL +++ + +++ A P S + Sbjct: 270 SPSIIFIDEIDAVAPKRDEASGEVERRMVAQLLTLLDGLESRGQVVILAATNRPDSIDMA 329 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK--------LAAYIVQRME 206 L RL I +PD ++++ R + + + ++ ++ Sbjct: 330 LRR-PGRLDRELT--IGIPDRTARKEILQ--IHTRNMPLQPDYEKNNVISVLNELIGELD 384 Query: 207 RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 R+ E++V K++N A L ++LKE D Sbjct: 385 RN--KIEEVVKKVENSAKEE-------LIEKILKENDLED 415 Score = 39.0 bits (90), Expect = 0.57, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 20/32 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + V+L GP G+GK+ LA +++S + S Sbjct: 540 PPKGVLLFGPPGTGKTLLAKAVANESEANFIS 571 >gi|28378233|ref|NP_785125.1| recombination factor protein RarA [Lactobacillus plantarum WCFS1] gi|28271068|emb|CAD63973.1| chromosome segregation helicase (putative) [Lactobacillus plantarum WCFS1] Length = 420 Score = 49.0 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 33/193 (17%), Positives = 69/193 (35%), Gaps = 30/193 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP--------VLLEDIDL 118 +IL GP G+GK+ LA I + + + A + + + +L+++I Sbjct: 44 LILWGPPGTGKTSLAQIIASQDDYPFVAFNASTENKAQLTKAIAQYPEQSFVLLIDEIHR 103 Query: 119 L--DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 + D L ++ N +++ T +P + SR + + D Sbjct: 104 MTKTLQDFLLPYLEN------GHVMLIGSTTENPIMSIVPAIRSR---CQIFEFQPLSDT 154 Query: 177 FLEKVIVKM------FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 +E + + D Q +D K I E L A +++ + A+ + I Sbjct: 155 DIEIALRRAVTDIYNLTDDQ--VDAKALNLIAISAEGDLRIALNILETL--HAIDQKQ-I 209 Query: 231 TRSLAAEVLKETQ 243 T + ++ Sbjct: 210 TVAAVQHFAQQQH 222 >gi|320333638|ref|YP_004170349.1| AAA ATPase central domain-containing protein [Deinococcus maricopensis DSM 21211] gi|319754927|gb|ADV66684.1| AAA ATPase central domain protein [Deinococcus maricopensis DSM 21211] Length = 438 Score = 49.0 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 64/175 (36%), Gaps = 25/175 (14%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA + + + + A S + + D R+ V + + T Sbjct: 45 GSLILWGPPGVGKTTLARLLARAVDAHFIALSAVS--AGVKDIREAVGEAERERGRGRRT 102 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + L+ A T S+ V P L SR A + + Sbjct: 103 LLFLDEIHRFNKAQQDALLPHVESGLLTLIGATTENPSFEVN-PALRSR---ARTLVLEA 158 Query: 173 PDDDFLEKVIVKMFAD-RQI---FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + + ++ + AD R + + + + + A + + ++ + Sbjct: 159 LTPEDIRGLLERALADERGLPGVTAQPEALDLLARLAD---GDARRALSTLEVAS 210 >gi|319644801|ref|ZP_07999034.1| YrvN protein [Bacillus sp. BT1B_CT2] gi|317392610|gb|EFV73404.1| YrvN protein [Bacillus sp. BT1B_CT2] Length = 421 Score = 49.0 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 28/197 (14%), Positives = 69/197 (35%), Gaps = 32/197 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKS-------RSTR--FSNIAKSLDSILIDTRKPVLLEDID 117 +IL GP G GK+ +A + + + ++ + + ++L+++ Sbjct: 41 MILYGPPGIGKTSIATAIAGSTSIAFRKLNAVINNKKDMEAIAAEAKMSGQVILILDEVH 100 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 LD + + ++M T + P + SR + ++ D + Sbjct: 101 RLDKGKQDFL----LPYLENGMIIMIGATTANPYHAINPAIRSR---TQIFELHPLDPEQ 153 Query: 178 LEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM-- 228 ++ I + D R + +D + ++ + ++ ++ LS Sbjct: 154 IKTAIKRALEDKHRGLGSYDVAVDDEALDHLARGCG---GDVRSALNALELAVLSTKENS 210 Query: 229 ----GITRSLAAEVLKE 241 IT +A E L++ Sbjct: 211 EGAIRITLEIAEECLQK 227 >gi|108802897|ref|YP_642834.1| hypothetical protein Rxyl_0041 [Rubrobacter xylanophilus DSM 9941] gi|108764140|gb|ABG03022.1| IstB-like ATP-binding protein [Rubrobacter xylanophilus DSM 9941] Length = 241 Score = 49.0 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 61/163 (37%), Gaps = 32/163 (19%) Query: 44 LVHSAIEQAVRLIDS-WPSWPSRV-----VILVGPSGSGKSCLA-NIWSDKSRSTRFSNI 96 V A +A+ +++ W + G G+GK+ LA + ++ + R ++ Sbjct: 68 YVSPAAAKALEKVEAYLKGWEENREQGRGLYFCGGVGTGKTHLAVAVMNELIQRRRVPSL 127 Query: 97 AKSLDSILIDTRKP--------------------VLLEDIDLLDFND---TQLFHIINSI 133 ++ +L + R +LL+D+ N+ +LF IIN Sbjct: 128 FVTVPELLDNLRGAYNDPGRDLDEWMDAVKNAELLLLDDLGAEKANEWVRERLFVIINHR 187 Query: 134 HQYDSSLLMTARTFPVSWGVCL-PDLCSRLKA-ATVVKISLPD 174 ++ + T+ P L SR+ A V++ PD Sbjct: 188 YREALPTIFTSNIGPEELPRQLGERTASRIIAMCEGVELEGPD 230 >gi|47076483|dbj|BAD18147.1| transposase B of IS643 [Bacillus halodurans] Length = 254 Score = 49.0 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 49/112 (43%), Gaps = 22/112 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDTR 108 +IL+GP G GK+ +A ++ F ++ ++ I Sbjct: 104 LILLGPPGIGKTHIAIGLGLEAVYRGFHVYFATMGELVQLLKSEEYLNKSKVQLKRIRNA 163 Query: 109 KPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 V+++D+ + + + FH+IN +++ SS+++T+ P WG + D Sbjct: 164 DLVIIDDLMYMAMDQREADLFFHLINHLYER-SSIILTSNKSPEEWGHLIGD 214 >gi|260435731|ref|ZP_05789701.1| recombination factor protein RarA/unknown domain fusion protein [Synechococcus sp. WH 8109] gi|260413605|gb|EEX06901.1| recombination factor protein RarA/unknown domain fusion protein [Synechococcus sp. WH 8109] Length = 722 Score = 49.0 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 64/170 (37%), Gaps = 24/170 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA I ++ +R+ S A + + ++ T L Sbjct: 58 LILHGPPGVGKTTLARIIANHTRAHFSSLNAVLAGIKDLRIEVDAARQRLERHGLR-TIL 116 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H NS + + +L+ A T + V L SR + + ++ + Sbjct: 117 FIDEVHRFNSAQQDALLPWVENGTVILIGATTENPYFEVNKA-LVSR---SRLFRLLPLE 172 Query: 175 DDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 + L++++ + AD R I I A ++V ++ Sbjct: 173 PEDLQRLLQRALADDERGYGYRSIDISSDAANHLVDVAGGDARSLLNALE 222 >gi|16519790|ref|NP_443910.1| transposase [Sinorhizobium fredii NGR234] gi|16519867|ref|NP_443987.1| transposase [Sinorhizobium fredii NGR234] gi|16519937|ref|NP_444057.1| transposase [Sinorhizobium fredii NGR234] gi|227818790|ref|YP_002822761.1| transposase [Sinorhizobium fredii NGR234] gi|227819036|ref|YP_002823007.1| transposase [Sinorhizobium fredii NGR234] gi|2497397|sp|P55500|Y4IQ_RHISN RecName: Full=Putative insertion sequence ATP-binding protein y4iQ/y4nD/y4sD gi|2182455|gb|AAB91712.1| putative transposase number 2 of insertion sequence NGRIS-5b [Sinorhizobium fredii NGR234] gi|2182539|gb|AAB91784.1| putative transposase number 2 for insertion sequence NGRIS-5a [Sinorhizobium fredii NGR234] gi|2182618|gb|AAB91844.1| putative transposase number 2 of insertion sequence NGRIS-5c [Sinorhizobium fredii NGR234] gi|36959047|gb|AAQ87472.1| Transposase [Sinorhizobium fredii NGR234] gi|227337789|gb|ACP22008.1| putative transposase number 2 for insertion sequence NGRIS-5d [Sinorhizobium fredii NGR234] gi|227338035|gb|ACP22254.1| putative transposase number 2 for insertion sequence NGRIS-5e [Sinorhizobium fredii NGR234] Length = 298 Score = 49.0 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 53/134 (39%), Gaps = 23/134 (17%) Query: 45 VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI---------WS-------DKS 88 V A A+ DSW + ++L GP G GKS LA W D Sbjct: 89 VSKAQVMAIAAGDSWLA-KGANILLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLV 147 Query: 89 RSTRFSNIAKSLDSIL--IDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMT 143 + + + L+S + +D ++L+D+ + + + LF +I S S+++T Sbjct: 148 QKLQVARRELQLESAIAKLDKFDLLILDDLAYVTKDQAETSVLFELI-SARYERRSIMIT 206 Query: 144 ARTFPVSWGVCLPD 157 A W PD Sbjct: 207 ANQPFGEWNRVFPD 220 >gi|307545643|ref|YP_003898122.1| recombination factor protein RarA [Halomonas elongata DSM 2581] gi|307217667|emb|CBV42937.1| recombination factor protein RarA [Halomonas elongata DSM 2581] Length = 446 Score = 49.0 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 63/156 (40%), Gaps = 29/156 (18%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 R +IL GP G+GK+ LA I +++S + R S + + I + + + D Sbjct: 50 RSMILWGPPGTGKTTLAEILAEESGAHLERLSAVMAGVKDIREAVDRARVAQGQDRGTL- 108 Query: 123 DTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H +N + L+ A T S+ V L SR A V + Sbjct: 109 ---LFLDEIHRLNKSQQDALLPHVESGLLTLIGATTENPSFEVNSA-LLSR---ARVHVL 161 Query: 171 SLPDDDFLEKVIVKMFAD-------RQIFIDKKLAA 199 DD + +V+ + AD R+I +D ++ Sbjct: 162 KALTDDDVVEVLRRALADETRGLGARRIAVDDEVLN 197 >gi|300088340|ref|YP_003758862.1| ATPase central domain-containing protein [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528073|gb|ADJ26541.1| AAA ATPase central domain protein [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 449 Score = 49.0 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 67/199 (33%), Gaps = 34/199 (17%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRST--------RFSNIAKSLDSILIDTRKP----VL 112 R +IL G G+GK+ + ++ + + ++ + V Sbjct: 221 RGLILSGHPGTGKTLICKAIMKQTAGKYTCITTDPGLMDEPNYIRAVYALAGELAPSFVF 280 Query: 113 LEDIDLLDFNDTQLFHIIN------------SIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 +ED+D + LF N D + + S L S Sbjct: 281 IEDLDQI-GQSRSLFPFHNGSPLNTLLEVMDGAEACDGIITIATTNSLDSLDSALIRRPS 339 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL--VFAEKLVDK 218 R ++++ PD+D +I + R+I +D + AYI R R ++++ Sbjct: 340 RFD--RIIELPHPDEDKRRSIIDTL--SRRIRLDADIKAYI-TRSTRHFTPAQLQEVIYT 394 Query: 219 M--DNLALSRGMGITRSLA 235 + D R T LA Sbjct: 395 LAIDRAGRERRFRTTAPLA 413 >gi|18129337|emb|CAC83492.1| DnaA protein [Wolbachia endosymbiont of Litomosoides sigmodontis] Length = 154 Score = 49.0 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 38/94 (40%), Gaps = 1/94 (1%) Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 P + SRL V I+ + ++ I++ + + ++ + + Sbjct: 1 RSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQAKVEQMNIYVSQDVLEFLAKNI 60 Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + ++ E ++K+ + +L G +T A+E L Sbjct: 61 KSNIRELEGALNKVAHTSLI-GRSVTVESASETL 93 >gi|193216431|ref|YP_001999673.1| chromosomal replication initiation protein [Mycoplasma arthritidis 158L3-1] gi|193001754|gb|ACF06969.1| chromosomal replication initiator protein DnaA [Mycoplasma arthritidis 158L3-1] Length = 454 Score = 49.0 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 26/203 (12%), Positives = 69/203 (33%), Gaps = 28/203 (13%) Query: 44 LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI 103 A++ A + ++ + + SG GK+ L N ++ + + D + Sbjct: 127 FNSVALKAARSIYENDQV-VFSPLFIYSSSGLGKTHLLNAIGNELMKKNKTCYYVNPDML 185 Query: 104 ---------------------LIDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSS 139 + + ++ +D+ ++ LF+IIN++ Sbjct: 186 TRKLVEQLKNKNQEEINKIVDNLVSYDCLMFDDVQQYGNRESTLTVLFNIINTLMNDKKQ 245 Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI---DKK 196 +++ A P G +R V+I P+ + ++ I +++ Sbjct: 246 IIIAADKRPEDLGGFEQRFITRFNGGLTVEIMQPEMSDVISILNFKLKQNNINPELWEEE 305 Query: 197 LAAYIVQRMERSLVFAEKLVDKM 219 +I + S+ E ++++ Sbjct: 306 SMKFIARNFSNSIRSLEGAINRI 328 >gi|52081232|ref|YP_080023.1| recombination factor protein RarA [Bacillus licheniformis ATCC 14580] gi|52786612|ref|YP_092441.1| recombination factor protein RarA [Bacillus licheniformis ATCC 14580] gi|52004443|gb|AAU24385.1| Replication factor C conserved domain [Bacillus licheniformis ATCC 14580] gi|52349114|gb|AAU41748.1| YrvN [Bacillus licheniformis ATCC 14580] Length = 421 Score = 49.0 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 28/197 (14%), Positives = 69/197 (35%), Gaps = 32/197 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKS-------RSTR--FSNIAKSLDSILIDTRKPVLLEDID 117 +IL GP G GK+ +A + + + ++ + + ++L+++ Sbjct: 41 MILYGPPGIGKTSIATAIAGSTSIAFRKLNAVINNKKDMEAIAAEAKMSGQVILILDEVH 100 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 LD + + ++M T + P + SR + ++ D + Sbjct: 101 RLDKGKQDFL----LPYLENGMIIMIGATTANPYHAINPAIRSR---TQIFELHPLDPEQ 153 Query: 178 LEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM-- 228 ++ I + D R + +D + ++ + ++ ++ LS Sbjct: 154 IKTAIKRALEDKHRGLGSYDVAVDDEALDHLARGCG---GDVRSALNALELAVLSTKENS 210 Query: 229 ----GITRSLAAEVLKE 241 IT +A E L++ Sbjct: 211 EGAIRITLEIAEECLQK 227 >gi|71282024|ref|YP_269469.1| recombination factor protein RarA [Colwellia psychrerythraea 34H] gi|71147764|gb|AAZ28237.1| ATPase, AAA family [Colwellia psychrerythraea 34H] Length = 511 Score = 49.0 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 66/177 (37%), Gaps = 31/177 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I GP GSGK+ LA I + + + R S + + I K L + + T Sbjct: 96 LIFWGPPGSGKTTLAEIIAQHANAEIERVSAVTSGIKEIRSAIEKAKLRAQGEGANKRRT 155 Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N Q D +++ T L SR A + + Sbjct: 156 VLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPAFELNQA---LLSR---ARLYTL 209 Query: 171 SLPDDDFLEKVIVKMF----ADRQIFIDKKL--AAYIVQRMERSLVFAEKLVDKMDN 221 D L +V+ + A++Q+ I + ++ R + A +L++ ++N Sbjct: 210 KKLTRDDLAQVLQRAISLCEAEQQLSIKLSVDAKQSLLNRSD---GDARRLLNLLEN 263 >gi|71032351|ref|XP_765817.1| 26S proteasome subunit [Theileria parva strain Muguga] gi|68352774|gb|EAN33534.1| 26S proteasome subunit, putative [Theileria parva] Length = 419 Score = 49.0 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 30/202 (14%), Positives = 74/202 (36%), Gaps = 40/202 (19%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + +++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 199 PPKGILMHGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKMVRDAFNLAKEK 258 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151 +++ID + + ++N + D ++ A P + Sbjct: 259 APTIIFIDEIDAIGTKRFDSELSGDREVQRTMLELLNQLDGFSTDDKVKVIAATNRPYTL 318 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI-VQRMERSL 209 L L S RL +++ P+++ ++ R++ + K Y+ + R + Sbjct: 319 DPAL--LRSGRLD--RKIELPHPNEEARAHILQ--IHSRKMNVHKDT-NYMELSRSTENF 371 Query: 210 VFAEKLVDKMDNLALSRGMGIT 231 A+ ++ ++ G T Sbjct: 372 NGAQLKAVCIEAGMVALRRGAT 393 >gi|325578148|ref|ZP_08148283.1| replication-associated recombination protein A [Haemophilus parainfluenzae ATCC 33392] gi|325159884|gb|EGC72013.1| replication-associated recombination protein A [Haemophilus parainfluenzae ATCC 33392] Length = 446 Score = 49.0 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 43/207 (20%), Positives = 84/207 (40%), Gaps = 43/207 (20%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI-----------LIDTRKPVLL 113 +IL GP G+GK+ LA I + + + R S + + I L D + + + Sbjct: 53 MILWGPPGTGKTTLAEIIAHRINAEVERISAVTSGVKEIRESIERAKQNRLADRQTILFV 112 Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR-----LKAAT 166 +++ + + F HI + + + + A T S+ + L SR LK+ T Sbjct: 113 DEVHRFNKSQQDAFLPHI-----EDGTIIFIGATTENPSFELNNA-LLSRARVYLLKSLT 166 Query: 167 VVKISLPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 V +I +V+ + +D R + +++ L + + + A ++ M Sbjct: 167 VAEIE--------QVLQQAISDPERGLGKERLVLEENLLQVLAEYVNGDARLALNCLELM 218 Query: 220 DNLAL--SRGMGITRSLAAEVLKETQQ 244 ++A G + +L EVL E Q Sbjct: 219 VDMAPETENGKKLDLTLLKEVLGERQA 245 >gi|14521559|ref|NP_127035.1| cell division control protein [Pyrococcus abyssi GE5] gi|5458778|emb|CAB50265.1| ATPase of the AAA+ family [Pyrococcus abyssi GE5] Length = 840 Score = 49.0 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 24/162 (14%), Positives = 61/162 (37%), Gaps = 33/162 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109 P + V+L GP G+GK+ LA ++++ + + + L I + + Sbjct: 245 PPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEEN 304 Query: 110 ---PVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + +++ A P + Sbjct: 305 APAIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALD-- 362 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196 P L + +++ +PD ++++ R + I+ Sbjct: 363 -PALRRPGRFDREIEVGVPDKQGRKEILQ--IHTRGMPIEPD 401 Score = 43.6 bits (102), Expect = 0.022, Method: Composition-based stats. Identities = 32/203 (15%), Positives = 67/203 (33%), Gaps = 56/203 (27%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRKP 110 P + V+L GP G+GK+ LA + +S++ + K + I R+ Sbjct: 580 PPKGVLLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQA 639 Query: 111 ----VLLEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 + +++ID + QL ++ + + +++ A P Sbjct: 640 SPAIIFIDEIDAIAPARGTAEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDP 699 Query: 154 CLPDLC----SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRME-- 206 L L RL + + PD+ ++ R + + + + +R E Sbjct: 700 AL--LRPGRFDRL-----ILVPAPDEKARFEIFKVH--TRGMPLADDVDLKELARRTEGY 750 Query: 207 ---------RS--LVFAEKLVDK 218 R + + V K Sbjct: 751 TGADIAAVCREAAMNALRRAVAK 773 >gi|332158940|ref|YP_004424219.1| cell division control protein [Pyrococcus sp. NA2] gi|331034403|gb|AEC52215.1| cell division control protein [Pyrococcus sp. NA2] Length = 840 Score = 49.0 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 27/196 (13%), Positives = 76/196 (38%), Gaps = 41/196 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109 P + V+L GP G+GK+ LA ++++ + + + L I + + Sbjct: 245 PPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEEN 304 Query: 110 ---PVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + +++ A P + Sbjct: 305 APAIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALD-- 362 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK-----LAAYI--VQRMER 207 P L + +++ +PD ++++ R + I+ + + +++ ER Sbjct: 363 -PALRRPGRFDREIEVGVPDKKGRKEILQ--IHTRGMPIEPDFEKEAVIKALKELEKDER 419 Query: 208 -SLVFAEKLVDKMDNL 222 + +L+++++ Sbjct: 420 FNKEKIRELIERVNKA 435 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 34/215 (15%), Positives = 75/215 (34%), Gaps = 45/215 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRKP 110 P + ++L GP G+GK+ LA + +S++ + K + I R+ Sbjct: 580 PPKGILLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQA 639 Query: 111 ----VLLEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 + +++ID + QL ++ + + +++ A P Sbjct: 640 APAIIFIDEIDAIAPARGTTEGERVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDP 699 Query: 154 CLPDLC----SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERS 208 L L RL + + PD+ ++ R + + + + + +R E Sbjct: 700 AL--LRPGRFDRL-----ILVPAPDERARFEIFKVH--TRNMPLGEDVDLRELARRTEGY 750 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 V + A++ + + L AE L+ Sbjct: 751 TGADIAAVCR--EAAMNALRRVVKRLPAEELENED 783 >gi|313201003|ref|YP_004039661.1| aaa atpase central domain-containing protein [Methylovorus sp. MP688] gi|312440319|gb|ADQ84425.1| AAA ATPase central domain protein [Methylovorus sp. MP688] Length = 440 Score = 49.0 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 70/186 (37%), Gaps = 23/186 (12%) Query: 58 SWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS-------------NIAKSLDSIL 104 ++ S +IL GP G GK+ LA + ++ + + + ++ ++ Sbjct: 42 AFQSGKLPSMILWGPPGVGKTTLARLIANTADAEFIPLSAVLSGIKDIREAVERAQHTLQ 101 Query: 105 IDTRKPVL-LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 R+ +L ++++ + F + + A T S+ V L SR Sbjct: 102 QSGRRTILFVDEVHRFNKGQQDAFLPF---VESGLITFIGATTENPSFEVNSA-LLSR-- 155 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 A V + + L +++ + A+ + + ++ ++ + V+ + N Sbjct: 156 -ARVFVLQALSEADLAELLERARANMAPDMALSDEVKEQVLAYADGDARRLLNFVEGLFN 214 Query: 222 LALSRG 227 AL+ G Sbjct: 215 AALTSG 220 >gi|167037129|ref|YP_001664707.1| recombination factor protein RarA [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115548|ref|YP_004185707.1| AAA ATPase central domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855963|gb|ABY94371.1| AAA ATPase, central domain protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928639|gb|ADV79324.1| AAA ATPase central domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 443 Score = 49.0 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 32/138 (23%), Positives = 55/138 (39%), Gaps = 22/138 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA I ++ + S FS + + I K ++D + T Sbjct: 56 MILWGPPGVGKTTLAMIIANMTNSKFITFSAVLSGIKEIKEIMAKA----ELDAMYGTRT 111 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +F H N + + +L+ A T S+ V L SR + V + Sbjct: 112 VVFIDEIHRFNKAQQDAFLPHVEKGNIILIGATTENPSFEVNSA-LLSR---SKVFVMKP 167 Query: 173 PDDDFLEKVIVKMFADRQ 190 ++ L ++ + D Q Sbjct: 168 LTEEDLLILLKRALKDEQ 185 >gi|297837215|ref|XP_002886489.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata] gi|297332330|gb|EFH62748.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata] Length = 1047 Score = 49.0 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 50/129 (38%), Gaps = 30/129 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------NIAKSLDSILIDTRKPVL 112 P + ++L GP+G+GK+ LA + ++ + + L P + Sbjct: 794 PCKGILLFGPAGTGKTMLAKALATEAGANLINISMSRWFSEGEKYVKAVFSLASKISPSI 853 Query: 113 L--EDIDLLDFNDTQLFH--IIN----SIHQYDSSLLMTA------------RTFPVSWG 152 + + +D + F D + + IIN ++ + L++ + R P Sbjct: 854 IFMDKVDSMLFQDQKTANEFIINWDGLRTNEKEHVLVLASTNRPFDLDEAVIRRLPHRLM 913 Query: 153 VCLPDLCSR 161 V LPD SR Sbjct: 914 VGLPDALSR 922 >gi|239906458|ref|YP_002953199.1| putative ATPase [Desulfovibrio magneticus RS-1] gi|239796324|dbj|BAH75313.1| putative ATPase [Desulfovibrio magneticus RS-1] Length = 408 Score = 49.0 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 61/169 (36%), Gaps = 13/169 (7%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI--LIDTRKPVLLEDIDLLD 120 ++L GP G GKS LA I + R S L ++ LI ++ ++L+++ Sbjct: 43 PSLLLFGPPGCGKSTLALILARAKGRPYVRVSAPEAGLAALRELIKGKEILILDELHRFS 102 Query: 121 FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 F I + +L+ T S+ V L SRL V+++ L Sbjct: 103 KAQQDFFLPI---LETGEIVLLATTTENPSFSVTRQ-LLSRL---HVLRLGPLTHPQLMV 155 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229 + + + + + K+ I LV+ ALS Sbjct: 156 LAERGAREAGMALAKESLETIAMLSSGDGRTLLNLVEY--TAALSEDKR 202 >gi|71033633|ref|XP_766458.1| cell division cycle protein 48 [Theileria parva strain Muguga] gi|68353415|gb|EAN34175.1| cell division cycle protein 48, putative [Theileria parva] Length = 811 Score = 49.0 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 62/164 (37%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R V+L GP GSGK+ +A ++++ + F SN+ ++ + Sbjct: 252 PPRGVLLYGPPGSGKTLIARAVANETGAFFFLINGPEVMSKMAGEAESNLRRAFAEAEKN 311 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + +++ A Sbjct: 312 APSIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGLKGRGQVVVIAAT---NRQNSI 368 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PDD +++ R + +D ++ Sbjct: 369 DPALR-RFGRFDKEIDIGVPDDQGRLEIL--KIHTRNMKLDPQV 409 Score = 39.7 bits (92), Expect = 0.39, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 24/57 (42%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA + + + S L ++ + + E D Sbjct: 525 PSRGVLFYGPPGCGKTLLAKAVASECSANFISVKGPELLTMWFGESEANVREVFDKA 581 >gi|124485944|ref|YP_001030560.1| beta-lactamase domain-containing protein [Methanocorpusculum labreanum Z] gi|124363485|gb|ABN07293.1| AAA family ATPase, CDC48 subfamily [Methanocorpusculum labreanum Z] Length = 810 Score = 49.0 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 25/166 (15%), Positives = 62/166 (37%), Gaps = 39/166 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTRK- 109 P + V+L GP G+GK+ +A ++++ + + + + L I + Sbjct: 236 PPKGVLLYGPPGTGKTLIARAVANEAGAYFDTISGPEIISKYYGDSEEKLREIFEKAEEN 295 Query: 110 ---PVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + +++ A P S Sbjct: 296 APSIIFIDEIDSIAPKREESKGEVERRVVAQLLSLMDGLKSRGKVIVIAATNLPDSID-- 353 Query: 155 LPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L + ++I +PD D +++ R + + + + Sbjct: 354 -PALR---RGGRFDREIEIGVPDKDGRREILQIHA--RNVPLSENV 393 >gi|66361858|ref|XP_627893.1| CDC48 like AAA ATPase ortholog [Cryptosporidium parvum Iowa II] gi|46227655|gb|EAK88590.1| CDC48 like AAA ATPase ortholog [Cryptosporidium parvum Iowa II] Length = 820 Score = 49.0 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 65/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R V+L GP GSGK+ +A ++++ + F N+ ++ + + Sbjct: 257 PPRGVLLYGPPGSGKTLIAKAVANETGAFFFLINGPEVMSKMAGEAEGNLRRAFEEAEKN 316 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + +++ A P S Sbjct: 317 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGLKGRGQVVVIAATNRPNSID-- 374 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PDD+ ++I R + + K + Sbjct: 375 -PALR-RFGRFDREIDIGVPDDNGRLEII--RIHTRNMKLAKDV 414 Score = 39.7 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 24/57 (42%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA + + + S L ++ + + E D Sbjct: 530 PSRGVLFYGPPGCGKTLLAKAVASECSANFISVKGPELLTLWFGESEANVREVFDKA 586 >gi|27468227|ref|NP_764864.1| recombination factor protein RarA [Staphylococcus epidermidis ATCC 12228] gi|293366416|ref|ZP_06613094.1| AAA family ATPase [Staphylococcus epidermidis M23864:W2(grey)] gi|27315773|gb|AAO04908.1|AE016748_142 conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] gi|291319450|gb|EFE59818.1| AAA family ATPase [Staphylococcus epidermidis M23864:W2(grey)] Length = 426 Score = 49.0 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 72/201 (35%), Gaps = 40/201 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117 +I GP G GK+ +A S ++ + ++ ++ + + +LL++I Sbjct: 46 MIFYGPPGIGKTSIAKAISGSTQFKFRQLNAVTNTKKDMQLIVEEAKMSGQVILLLDEIH 105 Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 L D L H+ N +L+ T + P + SR A + ++ Sbjct: 106 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 154 Query: 174 DDDFLEKVIVKMFAD--RQIF-----IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 D D + + + D R + +D+ Y + S ++ ++ LS Sbjct: 155 DQDDIRLALDRAINDKERGLSTYHPIVDEDAIEYFSTQ---SQGDVRSALNALELAVLSA 211 Query: 227 G------MGITRSLAAEVLKE 241 IT A + L++ Sbjct: 212 HIGEENERHITLDDAKDCLQK 232 >gi|67613096|ref|XP_667275.1| cell division cycle protein 48 [Cryptosporidium hominis TU502] gi|54658389|gb|EAL37040.1| cell division cycle protein 48 [Cryptosporidium hominis] Length = 814 Score = 49.0 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 65/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R V+L GP GSGK+ +A ++++ + F N+ ++ + + Sbjct: 251 PPRGVLLYGPPGSGKTLIAKAVANETGAFFFLINGPEVMSKMAGEAEGNLRRAFEEAEKN 310 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + +++ A P S Sbjct: 311 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGLKGRGQVVVIAATNRPNSID-- 368 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PDD+ ++I R + + K + Sbjct: 369 -PALR-RFGRFDREIDIGVPDDNGRLEII--RIHTRNMKLAKDV 408 Score = 39.7 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 24/57 (42%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA + + + S L ++ + + E D Sbjct: 524 PSRGVLFYGPPGCGKTLLAKAVASECSANFISVKGPELLTLWFGESEANVREVFDKA 580 >gi|307247443|ref|ZP_07529489.1| Replication-associated recombination protein A [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306856059|gb|EFM88216.1| Replication-associated recombination protein A [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 428 Score = 49.0 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 40/203 (19%), Positives = 72/203 (35%), Gaps = 35/203 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I GP G+GK+ LA I + + R S + + I + ++ T Sbjct: 34 MIFWGPPGTGKTTLAEIIAHHFDAEVERLSAVTSGVKEIREAIERA----KLNRQTGRRT 89 Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N Q D +++ T L SR A + + Sbjct: 90 LLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNA---LLSR---AKIYIL 143 Query: 171 SLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + +V+ D R + +I+ + + + FA ++ M ++A Sbjct: 144 KPLQAVEIAQVLTNALYDKERGLGNESYYIEDNVIELLADYVNGDARFALNCLELMSDMA 203 Query: 224 LS--RGMGITRSLAAEVLKETQQ 244 +G + ++L AEVL E Q Sbjct: 204 EISPQGKRLNKALLAEVLGERQA 226 >gi|210634752|ref|ZP_03298280.1| hypothetical protein COLSTE_02207 [Collinsella stercoris DSM 13279] gi|210158692|gb|EEA89663.1| hypothetical protein COLSTE_02207 [Collinsella stercoris DSM 13279] Length = 625 Score = 49.0 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 20/184 (10%), Positives = 57/184 (30%), Gaps = 31/184 (16%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS-----RVVILVGPSGSGKSCLA---NIWSD 86 + + + A + ++ + + G SG GK+ L + Sbjct: 260 NAKYTFESFVAGDENRHAFNSAMRFAAFAEEPGQCPSLFIYGNSGLGKTHLLFAVRNYLA 319 Query: 87 KSRSTR---FSNIAKSLDSILID----------------TRKPVLLEDIDLLDFNDTQL- 126 K + ++N LD + + ++++D+ + + Sbjct: 320 KEKPYIRVKYANSQAYLDDYMNELGTQRGPGSLIMREYRDADILIIDDVQNIVGKQASVE 379 Query: 127 --FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 F +++S + + + P + L SR + +S P + ++ + Sbjct: 380 FFFQLVDSFIREGKKIAFASDRAPKDLAMD-ERLTSRFSRGMLCLVSEPGFEMKYVILKR 438 Query: 185 MFAD 188 + + Sbjct: 439 YYEN 442 >gi|258405684|ref|YP_003198426.1| recombination factor protein RarA [Desulfohalobium retbaense DSM 5692] gi|257797911|gb|ACV68848.1| AAA ATPase central domain protein [Desulfohalobium retbaense DSM 5692] Length = 404 Score = 49.0 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 27/195 (13%), Positives = 67/195 (34%), Gaps = 13/195 (6%) Query: 39 SRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAK 98 S DD + + + Q ++ + + ++ GP G GKS LA +++ A Sbjct: 16 SLDDFIGQTHLRQRLQALQNASR--LSSLLFFGPPGCGKSTLALMFAKAHGGAYLRVSAP 73 Query: 99 SLDSILIDTR----KPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + + ++L+++ F + + +L+ T S+ + Sbjct: 74 EVGLANLRKQIQNTDILILDELHRFSKAQQDFFLP---LLETGDIILLATTTENPSFSIT 130 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 L SRL V+++ L + + + + + K + Sbjct: 131 RQ-LLSRL---HVLRLRPLGPQELLDLAQRGQQELGLHLPDKSLELLCTYAGGDGRTLLN 186 Query: 215 LVDKMDNLALSRGMG 229 L++ + L+ + Sbjct: 187 LLEYAEELSEEQRDP 201 >gi|262274499|ref|ZP_06052310.1| ATPase AAA family [Grimontia hollisae CIP 101886] gi|262221062|gb|EEY72376.1| ATPase AAA family [Grimontia hollisae CIP 101886] Length = 444 Score = 49.0 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 40/200 (20%), Positives = 77/200 (38%), Gaps = 40/200 (20%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKP-----------VLL 113 +IL GP G+GK+ LA + + + + R S + + I + K + + Sbjct: 52 MILWGPPGTGKTTLAEVAAGYANAEIERVSAVTSGVKDIRLAIDKAKENQMVGRRTVLFV 111 Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++ + + F HI + + + A T S+ + L SR A V K+ Sbjct: 112 DEVHRFNKSQQDAFLPHI-----EDGTITFIGATTENPSFELNNA-LLSR---ARVYKLK 162 Query: 172 LPDDDFLEKVIVKMFADR-------QIFIDKKLAAYIV------QRMERSLVFAEKLVDK 218 D + + VI + +DR + D+ + + RM + + + + Sbjct: 163 SLDREDILDVIEQALSDRERGLGNENLVFDEGVKDQLASFTSGDARMTLNYLELLSDMAE 222 Query: 219 MDNLALSRGMGITRSLAAEV 238 D+ IT +L AEV Sbjct: 223 PDS---DGKKLITLALLAEV 239 >gi|256752628|ref|ZP_05493481.1| AAA ATPase central domain protein [Thermoanaerobacter ethanolicus CCSD1] gi|256748512|gb|EEU61563.1| AAA ATPase central domain protein [Thermoanaerobacter ethanolicus CCSD1] Length = 443 Score = 49.0 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 57/143 (39%), Gaps = 24/143 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA I ++ + S FS + + I K ++D + T Sbjct: 56 MILWGPPGVGKTTLAMIIANMTNSKFVTFSAVLSGIKEIKEIMAKA----ELDAMYGTRT 111 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +F H N + + +L+ A T S+ V L SR + V + Sbjct: 112 VVFIDEIHRFNKAQQDAFLPHVEKGNIILIGATTENPSFEVNSA-LLSR---SKVFVMKP 167 Query: 173 PDDDFLEKVIVKMFAD--RQIFI 193 ++ L ++ + D R + + Sbjct: 168 LTEEDLLVLLKRALRDKERGLGM 190 >gi|124028210|ref|YP_001013530.1| ATP-dependent protease [Hyperthermus butylicus DSM 5456] gi|123978904|gb|ABM81185.1| ATP-dependent protease [Hyperthermus butylicus DSM 5456] Length = 736 Score = 49.0 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 31/224 (13%), Positives = 74/224 (33%), Gaps = 70/224 (31%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRKP 110 P + ++L GP G GK+ LA ++++ + + + L I + +K Sbjct: 218 PPKGILLYGPPGVGKTLLAKAIANETNAYFIAINGPEIMSKYYGESEQRLREIFEEAKKH 277 Query: 111 ----VLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + +++ID + ++ QL +++ + +++ A P + Sbjct: 278 APAIIFIDEIDAIAPKRDEVIGEVERRVVAQLLALMDGLESRGDVIVIAATNRPNALDPA 337 Query: 152 -----------GVCLPDLCSRL-------KAATVVK---ISLPDD-------DFLEKVIV 183 + LPD RL + + + + + L ++ Sbjct: 338 LRRPGRFDREIEIPLPDKQGRLEILQIHTRNMPLAEDVDLERLAELTRGFTGADLAALVR 397 Query: 184 K---MFADR--------QIFIDKKLAAYIVQRMERSLVFAEKLV 216 + R Q I ++ + RME + ++V Sbjct: 398 EAAMHALRRYLPKIDLNQDRIPPEVLEEMEIRMEDFMAALREIV 441 Score = 39.4 bits (91), Expect = 0.43, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 19/32 (59%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + ++L GP G+GK+ LA + +S + + Sbjct: 491 PPKGILLFGPPGTGKTLLAKAAATESGANFIA 522 >gi|125973135|ref|YP_001037045.1| recombination factor protein RarA [Clostridium thermocellum ATCC 27405] gi|256003930|ref|ZP_05428916.1| AAA ATPase central domain protein [Clostridium thermocellum DSM 2360] gi|281417327|ref|ZP_06248347.1| AAA ATPase central domain protein [Clostridium thermocellum JW20] gi|125713360|gb|ABN51852.1| Recombination protein MgsA [Clostridium thermocellum ATCC 27405] gi|255992058|gb|EEU02154.1| AAA ATPase central domain protein [Clostridium thermocellum DSM 2360] gi|281408729|gb|EFB38987.1| AAA ATPase central domain protein [Clostridium thermocellum JW20] gi|316940639|gb|ADU74673.1| AAA ATPase central domain protein [Clostridium thermocellum DSM 1313] Length = 432 Score = 49.0 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 71/184 (38%), Gaps = 37/184 (20%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 +IL GP G+GK+ LA I ++ +++ + + I+ DT+ P+L Sbjct: 45 IILYGPPGTGKTSLARIIANSTKANFEKLNAVTAGVADIKRIVSDTQNPIL------NPK 98 Query: 122 NDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 T LF H N + + +L+ A T + V L SR ++V Sbjct: 99 GRTVLFIDEIHRFNKSQQDALLPYVEDGTIILVGATTENPFFEVNKA-LISR---SSVFM 154 Query: 170 ISLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 + D ++K+I D R + I++ ++ + A ++ ++ Sbjct: 155 LKPLGSDAIKKIIRNALTDKERGLGNMDIEIEEDALNFLADICD---GDARIALNALELA 211 Query: 223 ALSR 226 L+ Sbjct: 212 VLTS 215 >gi|45357739|ref|NP_987296.1| cell division protein CDC48 [Methanococcus maripaludis S2] gi|45047299|emb|CAF29732.1| CDC48 cell division cycle protein family member [Methanococcus maripaludis S2] Length = 788 Score = 49.0 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 33/193 (17%), Positives = 74/193 (38%), Gaps = 42/193 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + V+L GP G+GK+ LA ++++ + + N+ K + + Sbjct: 210 PPKGVLLAGPPGTGKTLLAKAVANEAGANFYTINGPEIMSKYVGETEENLRKIFEEAEEN 269 Query: 107 TRKPVLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + ++ QL +++ + +++ A P S + Sbjct: 270 SPSIIFIDEIDAVAPKRDEASGEVERRMVAQLLTLMDGLESRGQLVILAATNRPDSIDMA 329 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK--------LAAYIVQRME 206 L RL + I +PD +++ R + + + +V + Sbjct: 330 LRR-PGRLD--REITIGIPDRHGRNEILQ--IHTRNMPLQPDYEKSDVISILNELVGEYD 384 Query: 207 RS-LVFAEKLVDK 218 RS + KLV+K Sbjct: 385 RSKIESLVKLVEK 397 Score = 39.0 bits (90), Expect = 0.53, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 20/32 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + V+L GP G+GK+ LA +++S + S Sbjct: 540 PPKGVLLFGPPGTGKTLLAKAVANESEANFIS 571 >gi|329724701|gb|EGG61207.1| recombination factor protein RarA [Staphylococcus epidermidis VCU144] Length = 423 Score = 49.0 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 72/201 (35%), Gaps = 40/201 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117 +I GP G GK+ +A S ++ + ++ ++ + + +LL++I Sbjct: 43 MIFYGPPGIGKTSIAKAISGSTQFKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIH 102 Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 L D L H+ N +L+ T + P + SR A + ++ Sbjct: 103 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 151 Query: 174 DDDFLEKVIVKMFAD--RQIF-----IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 D D + + + D R + +D+ Y + S ++ ++ LS Sbjct: 152 DQDDIRLALDRAINDKERGLSTYHPIVDEDAIEYFSTQ---SQGDVRSALNALELAVLSA 208 Query: 227 G------MGITRSLAAEVLKE 241 IT A + L++ Sbjct: 209 HIGEENERHITLDDAKDCLQK 229 >gi|154248851|ref|YP_001409676.1| Holliday junction DNA helicase RuvB [Fervidobacterium nodosum Rt17-B1] gi|171769318|sp|A7HJD6|RUVB_FERNB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|154152787|gb|ABS60019.1| Holliday junction DNA helicase RuvB [Fervidobacterium nodosum Rt17-B1] Length = 347 Score = 49.0 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 75/198 (37%), Gaps = 27/198 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G GK+ LA I +++ + L+ LE D+L ++ Sbjct: 60 ILLAGPPGLGKTTLATIIANELNANIHVTSGPILEKQGDLAAILTNLEAGDVLFIDEI-- 117 Query: 127 FHIINSIHQY---------DSSLLMTARTFPVSWGVCLPD------------LCS--RLK 163 H +N + +++ S V L L S R + Sbjct: 118 -HRMNRNVEEILYSAMEDFQVDIMIGKGPAARSIRVELQPFTLIGATTRSGLLTSPLRNR 176 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + +++ + L+ +I + ID A I +R + A +L+ ++ +L+ Sbjct: 177 FGMIFEMNFYTQEELKMIITRAAEVMGTLIDDDAALSIAKRSRGTPRIAIRLLKRVRDLS 236 Query: 224 LSRGMG-ITRSLAAEVLK 240 RG IT ++ EV++ Sbjct: 237 TVRGSENITLNIVEEVMR 254 >gi|307256490|ref|ZP_07538271.1| Replication-associated recombination protein A [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864900|gb|EFM96802.1| Replication-associated recombination protein A [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 428 Score = 49.0 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 40/203 (19%), Positives = 72/203 (35%), Gaps = 35/203 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I GP G+GK+ LA I + + R S + + I + ++ T Sbjct: 34 MIFWGPPGTGKTTLAEIIAHHFDAEVERLSAVTSGVKEIREAIERA----KLNRQTGRRT 89 Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N Q D +++ T L SR A + + Sbjct: 90 LLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNA---LLSR---AKIYIL 143 Query: 171 SLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + +V+ D R + +I+ + + + FA ++ M ++A Sbjct: 144 KPLQAVEIAQVLTNALYDKERGLGNESYYIEDNVIELLADYVNGDARFALNCLELMSDMA 203 Query: 224 LS--RGMGITRSLAAEVLKETQQ 244 +G + ++L AEVL E Q Sbjct: 204 EISPQGKRLNKALLAEVLGERQA 226 >gi|299143961|ref|ZP_07037041.1| ATPase, AAA family [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518446|gb|EFI42185.1| ATPase, AAA family [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 434 Score = 49.0 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 70/179 (39%), Gaps = 30/179 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKS--RSTRFSNIA---KSLDSILIDTRKPVLLEDIDLLDF 121 +I GP G GK+ LA I ++ + R + S + K L +L + + + E+ + + F Sbjct: 55 MIFYGPPGVGKTTLARIIANTTKKRFVQISAVTSNIKELREVLNEAEEFLKYENKNTILF 114 Query: 122 -NDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 ++ H N + +L+ A T + V L SR ++ + Sbjct: 115 IDEI---HRFNKTQQDALLPFVEKGIIILIGATTENPYFEVNKA-LVSR---CQILTLEA 167 Query: 173 PDDDFLEKVIVKMFADR------QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 + L ++I+K D I ID +++ S +++ ++ LS Sbjct: 168 LCQEELRELIIKALNDENGFGNLNIEIDDAAINFLINN---SSGDGRNILNSLEIAILS 223 >gi|90579109|ref|ZP_01234919.1| putative ATPase protein [Vibrio angustum S14] gi|90439942|gb|EAS65123.1| putative ATPase protein [Vibrio angustum S14] Length = 446 Score = 49.0 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 47/200 (23%), Positives = 84/200 (42%), Gaps = 40/200 (20%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST-------------RFSNIAKSLDSILIDTRKPVLL 113 +IL GP G+GK+ LA + + + + + I K+ D+ + R + + Sbjct: 52 MILWGPPGTGKTTLAEVAAHYANAEVERVSAVTSGIKDIRAAIDKARDNKMAGRRTILFV 111 Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++ + + F HI + + + A T S+ + L SR A V K+ Sbjct: 112 DEVHRFNKSQQDAFLPHI-----EDGTVTFIGATTENPSFELNNA-LLSR---ARVYKLK 162 Query: 172 LPDDDFLEKVIVKMFAD--RQIF---------IDKKLAAYIVQRMERSLVFAEKLVDKM- 219 +DD + +VI + D R + I +KLA ++ SL + E+L+D Sbjct: 163 SLEDDEILQVIEQALTDKERGVSETNIHFADDIKEKLAEFVRGDARMSLNYLEQLIDMAE 222 Query: 220 -DNLALSRGMGITRSLAAEV 238 D + + IT L AEV Sbjct: 223 EDEKGIKQ---ITVELLAEV 239 >gi|70951687|ref|XP_745064.1| 26S protease subunit regulatory subunit 6a [Plasmodium chabaudi chabaudi] gi|56525266|emb|CAH82289.1| 26S protease subunit regulatory subunit 6a, putative [Plasmodium chabaudi chabaudi] Length = 451 Score = 49.0 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 64/167 (38%), Gaps = 38/167 (22%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++ +T L + I ++ Sbjct: 231 PPKGVLMHGPPGTGKTLLARACASQTNATFLKLAGPQLVQMFIGDGAKMVRDAFNLAKEK 290 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + ++N + D ++ ++ A P + Sbjct: 291 APAIIFIDELDAIGTKRFDSELSGDREVQRTMLELLNQLDGFSTDETVKVIAATNRPDTL 350 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L L S RL +++ P+++ +++ R++ + K + Sbjct: 351 DPAL--LRSGRLD--RKIELPHPNEESRARILQ--IHSRKMNVHKDV 391 >gi|82596054|ref|XP_726104.1| 26s protease regulatory subunit 6a [Plasmodium yoelii yoelii str. 17XNL] gi|23481369|gb|EAA17669.1| 26s protease regulatory subunit 6a (tat-binding protein homolog 1) (tbp-1). [baker's yeast [Plasmodium yoelii yoelii] Length = 450 Score = 49.0 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 64/167 (38%), Gaps = 38/167 (22%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++ +T L + I ++ Sbjct: 230 PPKGVLMHGPPGTGKTLLARACASQTNATFLKLAGPQLVQMFIGDGAKMVRDAFNLAKEK 289 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + ++N + D ++ ++ A P + Sbjct: 290 APAIIFIDELDAIGTKRFDSELSGDREVQRTMLELLNQLDGFSTDETVKVIAATNRPDTL 349 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L L S RL +++ P+++ +++ R++ + K + Sbjct: 350 DPAL--LRSGRLD--RKIELPHPNEESRARILQ--IHSRKMNVHKDV 390 >gi|213401062|gb|ACJ47179.1| chromosomal replication initiation protein [Wolbachia endosymbiont of Litomosoides sigmodontis] Length = 135 Score = 48.6 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 38/94 (40%), Gaps = 1/94 (1%) Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 P + SRL V I+ + ++ I++ + + ++ + + Sbjct: 1 RSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQAKVEQMNIYVSQDVLEFLAKNI 60 Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + ++ E ++K+ + +L G +T A+E L Sbjct: 61 KSNIRELEGALNKVAHTSLI-GRSVTVESASETL 93 >gi|283768972|ref|ZP_06341878.1| recombination factor protein RarA [Bulleidia extructa W1219] gi|283104329|gb|EFC05706.1| recombination factor protein RarA [Bulleidia extructa W1219] Length = 441 Score = 48.6 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 34/199 (17%), Positives = 77/199 (38%), Gaps = 39/199 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD---FND 123 +IL GP G+GK+ LA + + ++ S+ + ++ ++ED + Sbjct: 52 LILTGPPGTGKTSLAMVVAQSTK----SHFEQVNATVAGKKDLEKIVEDASVRKERYGEK 107 Query: 124 TQLF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 T LF H N + +L+ A T + V L SR ++V ++ Sbjct: 108 TILFIDEIHRFNKGQQDYLLPFVEAGLLVLIGATTENPYFEVNRA-LLSR---SSVFQLK 163 Query: 172 LPDDDFLEKVIVKMFAD--RQIF-----IDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 + + +++ + D + + + +++ ++ E S A ++ ++ L Sbjct: 164 PLLKEDIVQLLKRACGDSKKGMASFMPMVSEEVYDFLA---EVSGGDARVALNALELAIL 220 Query: 225 SRG------MGITRSLAAE 237 + G IT + +E Sbjct: 221 TTGANEEGYREITLEIVSE 239 >gi|126666165|ref|ZP_01737145.1| putative orphan protein ; putative insertion sequence ATP-binding protein [Marinobacter sp. ELB17] gi|126629487|gb|EBA00105.1| putative orphan protein ; putative insertion sequence ATP-binding protein [Marinobacter sp. ELB17] Length = 150 Score = 48.6 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 22/112 (19%) Query: 67 VILVGPSGSGKSCLANIWSDK-----SRSTRFSNIAKS-------------LDSILIDTR 108 ++L+GPSG+GK+ +AN + R F IA +D Sbjct: 1 MLLIGPSGTGKTHIANALGHQLTEQGVRCKLFPAIALVQHLQQAKRDLDLMTAMTRLDKY 60 Query: 109 KPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 + V+++DI + D + LF I ++ SL++TA W PD Sbjct: 61 RVVIIDDIGYVKKTDAETQVLFEFIAHRYESG-SLIVTANQPFSEWDQIFPD 111 >gi|59801120|ref|YP_207832.1| recombination factor protein RarA [Neisseria gonorrhoeae FA 1090] gi|194098765|ref|YP_002001827.1| recombination factor protein RarA [Neisseria gonorrhoeae NCCP11945] gi|239999059|ref|ZP_04718983.1| recombination factor protein RarA [Neisseria gonorrhoeae 35/02] gi|240014030|ref|ZP_04720943.1| recombination factor protein RarA [Neisseria gonorrhoeae DGI18] gi|240016470|ref|ZP_04723010.1| recombination factor protein RarA [Neisseria gonorrhoeae FA6140] gi|240080592|ref|ZP_04725135.1| recombination factor protein RarA [Neisseria gonorrhoeae FA19] gi|240113038|ref|ZP_04727528.1| recombination factor protein RarA [Neisseria gonorrhoeae MS11] gi|240115795|ref|ZP_04729857.1| recombination factor protein RarA [Neisseria gonorrhoeae PID18] gi|240118091|ref|ZP_04732153.1| recombination factor protein RarA [Neisseria gonorrhoeae PID1] gi|240121596|ref|ZP_04734558.1| recombination factor protein RarA [Neisseria gonorrhoeae PID24-1] gi|240123645|ref|ZP_04736601.1| recombination factor protein RarA [Neisseria gonorrhoeae PID332] gi|240125829|ref|ZP_04738715.1| recombination factor protein RarA [Neisseria gonorrhoeae SK-92-679] gi|240128343|ref|ZP_04741004.1| recombination factor protein RarA [Neisseria gonorrhoeae SK-93-1035] gi|254493843|ref|ZP_05107014.1| recombination factor protein RarA [Neisseria gonorrhoeae 1291] gi|260440387|ref|ZP_05794203.1| recombination factor protein RarA [Neisseria gonorrhoeae DGI2] gi|268594903|ref|ZP_06129070.1| recombination factor protein RarA [Neisseria gonorrhoeae 35/02] gi|268596717|ref|ZP_06130884.1| recombination factor protein RarA [Neisseria gonorrhoeae FA19] gi|268599122|ref|ZP_06133289.1| recombination factor protein RarA [Neisseria gonorrhoeae MS11] gi|268601473|ref|ZP_06135640.1| recombination factor protein RarA [Neisseria gonorrhoeae PID18] gi|268603806|ref|ZP_06137973.1| recombination factor protein RarA [Neisseria gonorrhoeae PID1] gi|268682274|ref|ZP_06149136.1| recombination factor protein RarA [Neisseria gonorrhoeae PID332] gi|268684428|ref|ZP_06151290.1| recombination factor protein RarA [Neisseria gonorrhoeae SK-92-679] gi|268686740|ref|ZP_06153602.1| recombination factor protein RarA [Neisseria gonorrhoeae SK-93-1035] gi|291043684|ref|ZP_06569400.1| recombination factor protein RarA [Neisseria gonorrhoeae DGI2] gi|293398982|ref|ZP_06643147.1| ATPase [Neisseria gonorrhoeae F62] gi|59718015|gb|AAW89420.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090] gi|193934055|gb|ACF29879.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945] gi|226512883|gb|EEH62228.1| recombination factor protein RarA [Neisseria gonorrhoeae 1291] gi|268548292|gb|EEZ43710.1| recombination factor protein RarA [Neisseria gonorrhoeae 35/02] gi|268550505|gb|EEZ45524.1| recombination factor protein RarA [Neisseria gonorrhoeae FA19] gi|268583253|gb|EEZ47929.1| recombination factor protein RarA [Neisseria gonorrhoeae MS11] gi|268585604|gb|EEZ50280.1| recombination factor protein RarA [Neisseria gonorrhoeae PID18] gi|268587937|gb|EEZ52613.1| recombination factor protein RarA [Neisseria gonorrhoeae PID1] gi|268622558|gb|EEZ54958.1| recombination factor protein RarA [Neisseria gonorrhoeae PID332] gi|268624712|gb|EEZ57112.1| recombination factor protein RarA [Neisseria gonorrhoeae SK-92-679] gi|268627024|gb|EEZ59424.1| recombination factor protein RarA [Neisseria gonorrhoeae SK-93-1035] gi|291012147|gb|EFE04136.1| recombination factor protein RarA [Neisseria gonorrhoeae DGI2] gi|291610396|gb|EFF39506.1| ATPase [Neisseria gonorrhoeae F62] gi|317164351|gb|ADV07892.1| recombination factor protein RarA [Neisseria gonorrhoeae TCDC-NG08107] Length = 436 Score = 48.6 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 51/195 (26%), Positives = 78/195 (40%), Gaps = 26/195 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G GK+ LA I + + A S + D R + +I L T L Sbjct: 50 MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIRGAIDKAEIALQQGRATIL 107 Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 F H N Q D+ L L+T A T S+ V P L SR A V + Sbjct: 108 FVDEVHRFNKAQQ-DAFLPHVESGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQSL 162 Query: 174 DDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 D L+K+I K+ A R I+ + +V + L++++ A +R + I Sbjct: 163 SSDDLKKLIAKVLALPEYRDFTIEADVQELLVNTADGDARRLLNLLEQLLRAADTRRLKI 222 Query: 231 TRSLAAEVLKETQQC 245 L E L ++ Sbjct: 223 ---LTTEFLADSLGA 234 >gi|260913897|ref|ZP_05920371.1| replication-associated recombination protein A [Pasteurella dagmatis ATCC 43325] gi|260631984|gb|EEX50161.1| replication-associated recombination protein A [Pasteurella dagmatis ATCC 43325] Length = 446 Score = 48.6 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 38/204 (18%), Positives = 76/204 (37%), Gaps = 37/204 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS-------------TRFSNIAKSLDSILIDTRKPVLL 113 +I GP G+GK+ LA I + + + I ++ + L D R + + Sbjct: 53 MIFWGPPGTGKTTLAEIIAQRINAEVERISAVTSGVKEIREAIERAKQNRLSDRRTILFV 112 Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVK 169 +++ + + F HI + + + + T L SR A V Sbjct: 113 DEVHRFNKSQQDAFLPHI-----EDGTIIFIGATTENPSFELNSA---LLSR---ARVYV 161 Query: 170 ISLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 + + +V+ + D R + F+++ L + + + A ++ M ++ Sbjct: 162 LKSLTITEITQVLRQALQDEERGLGKERFFLEENLLEMLAEYVNGDARLALNCLELMSDM 221 Query: 223 ALSR--GMGITRSLAAEVLKETQQ 244 A G + R+L EVL E Q Sbjct: 222 AEEHENGKILNRTLLKEVLGERQA 245 >gi|226311479|ref|YP_002771373.1| hypothetical protein BBR47_18920 [Brevibacillus brevis NBRC 100599] gi|226094427|dbj|BAH42869.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 452 Score = 48.6 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 40/191 (20%), Positives = 75/191 (39%), Gaps = 31/191 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 VI GP G+GK+ LA + + +R+ A + I E + ++D T L Sbjct: 57 VIFYGPPGTGKTTLAKVIARTTRTHFSELNAVTAGVADIRKVVDAAKERL-VMDSQRTTL 115 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N + + +L+ A T + V P L SR + V + Sbjct: 116 FVDEIHRFNKSQQDALLPYVEEGTIILIGATTENPFFEVN-PALLSR---SQVFSLQSLS 171 Query: 175 DDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 + L++V+ + D + ++ + A ++VQ E A +L++ ++ + Sbjct: 172 HEELKQVMDRALTDEENGLAELFVTVEPEAAEHLVQYAE---GDARRLLNALELAVTTTQ 228 Query: 228 ----MGITRSL 234 IT +L Sbjct: 229 PGADGRITVTL 239 >gi|14520611|ref|NP_126086.1| cell division protein CDC48 [Pyrococcus abyssi GE5] gi|5457827|emb|CAB49317.1| Cdc48 cell division control protein 48, AAA family [Pyrococcus abyssi GE5] Length = 795 Score = 48.6 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 30/214 (14%), Positives = 72/214 (33%), Gaps = 43/214 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106 P + ++L GP G+GK+ LA + +S++ + NI + Sbjct: 549 PPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQA 608 Query: 107 TRKPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL ++ I + +++ A P Sbjct: 609 APTVIFIDEIDAIAPRRGTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPA 668 Query: 155 LPDLC----SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSL 209 L L RL + + PD+ ++ R + + + + +R E Sbjct: 669 L--LRPGRFDRL-----ILVPAPDEKARFEIFKVHT--RGMPLADDVDLKELARRTEGYT 719 Query: 210 VFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 V + + ++ + + + +K ++ Sbjct: 720 GADIAAVCR-EAAMIAMRRALEKGIIKPGMKASE 752 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 23/162 (14%), Positives = 61/162 (37%), Gaps = 33/162 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109 P + V+L GP G+GK+ LA ++++ + + + L + + + Sbjct: 215 PPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEEN 274 Query: 110 ---PVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + +++ A P + Sbjct: 275 APAIIFIDEIDAIAPKRSEVTGEVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAID-- 332 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196 P L + +++ +PD ++++ R + I+ Sbjct: 333 -PALRRPGRFDREIEVGVPDRQGRKEILQ--IHTRGMPIEPD 371 >gi|257126269|ref|YP_003164383.1| recombination factor protein RarA [Leptotrichia buccalis C-1013-b] gi|257050208|gb|ACV39392.1| AAA ATPase central domain protein [Leptotrichia buccalis C-1013-b] Length = 409 Score = 48.6 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 80/233 (34%), Gaps = 39/233 (16%) Query: 29 FFSFPRCLGISRDDL-----LVHSAIEQAVRLIDSWPSWPSRVV--ILVGPSGSGKSCLA 81 +F S DD LV ++I+ + I G G+GK+ LA Sbjct: 13 PLAFRYRPK-SLDDFYGQKRLVGE-NGILRKIIER-----GNFMNAIFWGAPGTGKTTLA 65 Query: 82 NIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLF----HIINSIH- 134 I S+K + I S+ I + K + ++ T LF H N + Sbjct: 66 EIISNKMNYHYEYLNAIKASVADIKEISEKAA---NRFHMNGQQTLLFLDEIHRFNKLQQ 122 Query: 135 -------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 + + +L+ A T + + L SR + + L +++ + Sbjct: 123 DSLLQDLENGNIILIGATTENPYYNLNNA-LLSR---CLAFEFKKLSEKNLMEILKNINE 178 Query: 188 DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 I + YI + +E A +++ + N+ G+ T E+L Sbjct: 179 KENFGISDDILEYISEIIEGDARQAINILELITNV----GVEFTLEEVKEILN 227 >gi|124515828|gb|EAY57337.1| probable ATPase, AAA family [Leptospirillum rubarum] Length = 444 Score = 48.6 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 30/174 (17%), Positives = 55/174 (31%), Gaps = 26/174 (14%) Query: 65 RVVILVGPSGSGKS---CLAN----------IWSDKSRSTRFSNIAKSLDSILIDTRKPV 111 R +++ GP G GKS L + S I + + + Sbjct: 48 RSMVIHGPPGCGKSAFVHLLQKVLPFHFEVVRAGESSGGELKKAIDRGVSYRQSGQDCLL 107 Query: 112 LLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 ++E+ID + LL+ +F LP L SRL + Sbjct: 108 VIEEIDRFTRTQQDVL----VPALERGDLLLLGLSFDNPLRALLPPLASRL---LLFSFQ 160 Query: 172 LPDDDFLEKVIVKMF-----ADRQ-IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 + L ++ + DR + I + A+ +V+R L + + Sbjct: 161 PLSPEDLLTLLERGRQFLEKRDRSPVSISPEAASVLVRRSGGDGRKLLLLFEAL 214 >gi|295094324|emb|CBK83415.1| ATPase involved in DNA replication initiation [Coprococcus sp. ART55/1] Length = 152 Score = 48.6 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 4/56 (7%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPS----RVVILVGPSGSGKSCLANIWSD 86 + ++ +V + + A + P + L G SG GK+ L + Sbjct: 21 RPDYTFENFIVGESNKHAHATCLAVADSPGQDKFNPLFLYGGSGLGKTHLMQSIAH 76 >gi|57867117|ref|YP_188766.1| recombination factor protein RarA [Staphylococcus epidermidis RP62A] gi|251811032|ref|ZP_04825505.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus epidermidis BCM-HMP0060] gi|282875948|ref|ZP_06284815.1| recombination factor protein RarA [Staphylococcus epidermidis SK135] gi|57637775|gb|AAW54563.1| ATPase, AAA family [Staphylococcus epidermidis RP62A] gi|251805450|gb|EES58107.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus epidermidis BCM-HMP0060] gi|281294973|gb|EFA87500.1| recombination factor protein RarA [Staphylococcus epidermidis SK135] gi|329735258|gb|EGG71550.1| recombination factor protein RarA [Staphylococcus epidermidis VCU045] gi|329737108|gb|EGG73362.1| recombination factor protein RarA [Staphylococcus epidermidis VCU028] Length = 423 Score = 48.6 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 72/201 (35%), Gaps = 40/201 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117 +I GP G GK+ +A S ++ + ++ ++ + + +LL++I Sbjct: 43 MIFYGPPGIGKTSIAKAISGSTQFKFRQLNAVTNTKKDMQLIVEEAKMSGQVILLLDEIH 102 Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 L D L H+ N +L+ T + P + SR A + ++ Sbjct: 103 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 151 Query: 174 DDDFLEKVIVKMFAD--RQIF-----IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 D D + + + D R + +D+ Y + S ++ ++ LS Sbjct: 152 DQDDIRLALDRAINDKERGLSTYHPIVDEDAIEYFSTQ---SQGDVRSALNALELAVLSA 208 Query: 227 G------MGITRSLAAEVLKE 241 IT A + L++ Sbjct: 209 HIGEENERHITLDDAKDCLQK 229 >gi|31983694|ref|NP_858202.1| IS21 ORF2 [Shigella flexneri 2a str. 301] gi|18462686|gb|AAL72458.1| IS21 ORF2 [Shigella flexneri 2a str. 301] gi|281603817|gb|ADA76800.1| IS21 ORF2 [Shigella flexneri 2002017] gi|333010210|gb|EGK29644.1| istB-like ATP binding family protein [Shigella flexneri K-218] gi|333010936|gb|EGK30360.1| istB-like ATP binding family protein [Shigella flexneri K-218] Length = 208 Score = 48.6 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 50/145 (34%), Gaps = 25/145 (17%) Query: 32 FPRCLGISRDDLLVHSA-IEQAVRLIDSWPSW--PSRVVILVGPSGSGKSCLANIWSDKS 88 P +S D + + + W V+L G SG GKS LA D Sbjct: 23 LPVAKTLSEYDFIQLPELNGAQFQQLCETTDWVDAGENVLLFGASGLGKSHLAAAIVDGV 82 Query: 89 RSTRFSNIAKSLDSILIDTRKP------------------VLLEDIDLLDFNDTQ---LF 127 + S +L + RK ++++D+ + + + LF Sbjct: 83 VGQGYRARFYSAGELLQELRKARAQLKLNELLLKLDRYRVIVVDDLGYVKRDSAETGVLF 142 Query: 128 HIINSIHQYDSSLLMTARTFPVSWG 152 +I ++ SL++T+ WG Sbjct: 143 ELIAHRYERG-SLVITSNHPFSMWG 166 >gi|300120406|emb|CBK19960.2| unnamed protein product [Blastocystis hominis] Length = 408 Score = 48.6 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 30/203 (14%), Positives = 72/203 (35%), Gaps = 44/203 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL-------------- 112 ++L GP G+GK+ LA + ++ + A LD I ++ Sbjct: 186 ILLYGPPGTGKTLLARACAKQTDAAFIKLSATVLDQAHIGEGSRIVRDCFSLAKKKIEEK 245 Query: 113 --------LEDIDLLDFN-----------DTQLFHIINSIH--QYDSSL-LMTARTFPVS 150 ++++D + L ++N++ DS + ++ A P Sbjct: 246 QAKGSIIFIDELDAIGIKRSGDGEGSHEVQRTLLELLNAMDGFSSDSRIKVIAATNRPDI 305 Query: 151 WGVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY-IVQRMERS 208 L L S R V++ P+++ K++ +++ ++++ + + R Sbjct: 306 LDPAL--LRSGRFD--RKVELPNPNEEARVKILQ--IHSKKLVLNRESVNFEEIARCTED 359 Query: 209 LVFAEKLVDKMDNLALSRGMGIT 231 A ++ L+ G + Sbjct: 360 FSGAMLRAVCVEAGMLALRRGAS 382 >gi|320181378|gb|EFW56296.1| transposase-associated ATP-binding protein, putative [Shigella boydii ATCC 9905] Length = 186 Score = 48.6 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 50/144 (34%), Gaps = 25/144 (17%) Query: 33 PRCLGISRDDLLVHSA-IEQAVRLIDSWPSW--PSRVVILVGPSGSGKSCLANIWSDKSR 89 P +S D + R + W V+L G SG GKS LA D Sbjct: 2 PVAKTLSEYDFIQLPELNGAQFRQLCETTDWVDAGENVLLFGASGLGKSHLAAAIVDGVV 61 Query: 90 STRFSNIAKSLDSILIDTRKP------------------VLLEDIDLLDFNDTQ---LFH 128 + S +L + RK ++++D+ + + + LF Sbjct: 62 GQGYRARFYSAGELLQELRKARAQLKLNELLLKLDRYRVIVVDDLGYVKRDSAETGVLFE 121 Query: 129 IINSIHQYDSSLLMTARTFPVSWG 152 +I ++ SL++T+ WG Sbjct: 122 LIAHRYERG-SLVITSNHPFSMWG 144 >gi|146448775|gb|ABQ41382.1| cell division cycle 48 [Paralichthys olivaceus] Length = 806 Score = 48.6 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 237 PPRGILLYGPPGTGKTLIARAAANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + ++++D + QL +++ + Q ++M A P S Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356 Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181 + +PD RL+ + L DD LE+V Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399 Score = 39.0 bits (90), Expect = 0.53, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566 >gi|308813520|ref|XP_003084066.1| sister chromatid cohesion-related (ISS) [Ostreococcus tauri] gi|116055949|emb|CAL58482.1| sister chromatid cohesion-related (ISS) [Ostreococcus tauri] Length = 739 Score = 48.6 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 71/175 (40%), Gaps = 31/175 (17%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSR----STRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 +++++ GP G GK+ LA+I + + ++ S + + K V++++ID + Sbjct: 225 EKILLISGPPGVGKTTLAHIAAKHCGYELLKVKLADALHSCSAFVQQKPKCVIIDEIDGV 284 Query: 120 ---DFNDTQLFHIINSIHQY--DSSL----------LMTARTFPVSWGVCLPDLCSRLKA 164 + ++ ++N++ + L L P L D+ Sbjct: 285 HNAGGDRGAIYAVLNALKSQKGGAPLSRPIIAICNDLYCTSLRP------LRDV------ 332 Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 A V+++ P + L I ++ A + ++ + A + +R+ + A + + Sbjct: 333 AKVIRVKPPPNATLNGRIREICAKENVDVEPRAVALVAERVNNDIRSALHTIQLI 387 >gi|296133419|ref|YP_003640666.1| AAA ATPase central domain protein [Thermincola sp. JR] gi|296031997|gb|ADG82765.1| AAA ATPase central domain protein [Thermincola potens JR] Length = 445 Score = 48.6 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 44/252 (17%), Positives = 95/252 (37%), Gaps = 45/252 (17%) Query: 23 NKEEQLFFSFPRCLGISR---DDL-----LVHSAIEQAVRLIDSWPSWPSRVVILVGPSG 74 N++ QL P + + D+ +V + R I++ VI GP G Sbjct: 7 NRQNQLKKEAPLAVRMRPRTLDEFVGQEQIVGPG-KLLRRAIEADQ---LSSVIFYGPPG 62 Query: 75 SGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLF----HII 130 +GK+ LA + ++ +++ A + + E + + T LF H Sbjct: 63 TGKTTLAKVIANTTKAFFVQVNAVTSGVAELREVIQNAKERL-GMYGQRTILFIDEIHRF 121 Query: 131 NSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 N + + +L+ A T + V P L SR + + K +D + K++ Sbjct: 122 NKSQQDALLPYVEDGTIILIGATTENPYFEVNAP-LRSR---SRIFKFESLSNDDIRKLL 177 Query: 183 VKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG------MG 229 + D+ ++ + ++ ++V + S A ++ ++ L+ Sbjct: 178 WRALQDKEAGLGNYKVDLTEEALEHLV---DISSGDARTALNALELAVLTTAPDEKGVRK 234 Query: 230 ITRSLAAEVLKE 241 IT +A E +++ Sbjct: 235 ITLEVAEESIQK 246 >gi|163915553|gb|AAI57421.1| Unknown (protein for MGC:179840) [Xenopus laevis] Length = 339 Score = 48.6 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 54/148 (36%), Gaps = 28/148 (18%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA+I + ++ + + S S + + N+ Sbjct: 185 PSIILWGPPGCGKTTLAHIIAKNAQKSSSRFVTLSATSASTSDVREFI-----KQAQNEQ 239 Query: 125 QLF-----------HIINSIHQY--------DSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 +LF H N + Q + L+ A T S+ V L SR Sbjct: 240 RLFKRKTILFVDEIHRFNKMQQDTFLPHVECGTITLIGATTENPSFQVNTA-LLSR---C 295 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFI 193 V+ + + +E ++++ + + Sbjct: 296 RVIVLEKLSVEAMETILMRAVDSLGLKV 323 >gi|147902451|ref|NP_001089187.1| Werner helicase interacting protein 1 [Xenopus laevis] gi|63147358|dbj|BAD98297.1| Werner helicase interacting protein 1 [Xenopus laevis] Length = 572 Score = 48.6 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 54/148 (36%), Gaps = 28/148 (18%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA+I + ++ + + S S + + N+ Sbjct: 185 PSIILWGPPGCGKTTLAHIIAKNAQKSSSRFVTLSATSASTSDVREFI-----KQAQNEQ 239 Query: 125 QLF-----------HIINSIHQY--------DSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 +LF H N + Q + L+ A T S+ V L SR Sbjct: 240 RLFKRKTILFVDEIHRFNKMQQDTFLPHVECGTITLIGATTENPSFQVNTA-LLSR---C 295 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFI 193 V+ + + +E ++++ + + Sbjct: 296 RVIVLEKLSVEAMETILMRAVDSLGLKV 323 >gi|327413090|emb|CAX68119.1| putative insertion sequence protein [Salmonella enterica subsp. enterica] Length = 254 Score = 48.6 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 30/145 (20%), Positives = 57/145 (39%), Gaps = 25/145 (17%) Query: 32 FPRCLGISRDDL-LVHSAIEQAVRLIDSWPSWPSR--VVILVGPSGSGKSCLANIWSD-- 86 P ++ D V VR + W V+L G SG GKS LA +D Sbjct: 66 LPVGKTLAEYDFGQVPELNAAQVRQLCETTDWVDSGENVLLFGASGLGKSHLAAAIADGV 125 Query: 87 --KSRSTRFSNIAKSLDSIL--------------IDTRKPVLLEDIDLLDFNDTQ---LF 127 + RF + + L + +D + ++++D+ + ++ + LF Sbjct: 126 VSQGHRVRFYSAGELLQELRKARSLLRLNEMLLKLDRYRVIVIDDLGYVKRDNAETGVLF 185 Query: 128 HIINSIHQYDSSLLMTARTFPVSWG 152 +I ++ SL++T+ +WG Sbjct: 186 ELIAHRYERG-SLIITSNHPFSTWG 209 >gi|326391411|ref|ZP_08212948.1| AAA ATPase central domain protein [Thermoanaerobacter ethanolicus JW 200] gi|325992546|gb|EGD51001.1| AAA ATPase central domain protein [Thermoanaerobacter ethanolicus JW 200] Length = 443 Score = 48.6 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 57/143 (39%), Gaps = 24/143 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA I ++ + S FS + + I K ++D + T Sbjct: 56 MILWGPPGVGKTTLAMIIANMTNSKFITFSAVLSGIKEIKEIMAKA----ELDAMYGTRT 111 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +F H N + + +L+ A T S+ V L SR + V + Sbjct: 112 VVFIDEIHRFNKAQQDAFLPHVEKGNIILIGATTENPSFEVNSA-LLSR---SKVFVMKP 167 Query: 173 PDDDFLEKVIVKMFAD--RQIFI 193 ++ L ++ + D R + + Sbjct: 168 LTEEDLLVLLKRALRDKERGLGM 190 >gi|288560385|ref|YP_003423871.1| replication factor C large subunit RfcL [Methanobrevibacter ruminantium M1] gi|288543095|gb|ADC46979.1| replication factor C large subunit RfcL [Methanobrevibacter ruminantium M1] Length = 530 Score = 48.6 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 44/216 (20%), Positives = 87/216 (40%), Gaps = 41/216 (18%) Query: 54 RLIDSWPSW-PSRVVILVGPSGSGKSCLANIWSD-------------KSRSTRFSNIAKS 99 + SW P + ++L+GP+G+GK+ +A+I ++ +S+ S I +S Sbjct: 27 DWLQSWQDGNPQKPLLLIGPAGTGKTTIAHIIANEFSEYIELNASDKRSQDVLMSTIGES 86 Query: 100 LD--SILIDTRKPVLLEDIDLLDF-NDTQLFHIIN-SIHQYDSSLLMTARTFPVSWGVCL 155 S+ + +K ++++++D + ND +N I ++M A F + + Sbjct: 87 ATTKSLFGENKKLIIMDEVDGIHGTNDRGGTSALNKIIKNSKQPIVMMANDFYSNKLTTI 146 Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD-----RQIFIDKKLAAYIVQRMERSLV 210 K A V+K+ D I K D I +D + +++ +RS Sbjct: 147 K------KNAQVIKM----DKIRAPTINKFLRDVVLKNEGIEVDPDV---LMKLSKRSSG 193 Query: 211 FAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 ++ + + G +T E L T Q D Sbjct: 194 DLRSAINTL-QALVENGGELT----EETLDTTGQKD 224 >gi|221056340|ref|XP_002259308.1| 26S protease subunit regulatory subunit; 26S protease subunit regulatory subunit 6a [Plasmodium knowlesi strain H] gi|193809379|emb|CAQ40081.1| 26S protease subunit regulatory subunit 6a,putative [Plasmodium knowlesi strain H] Length = 440 Score = 48.6 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 63/167 (37%), Gaps = 38/167 (22%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++ +T L + I ++ Sbjct: 220 PPKGVLMHGPPGTGKTLLARACASQTNATFLKLAGPQLVQMFIGDGAKMVRDAFNLAKEK 279 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151 ++++D + + ++N + D+ ++ A P + Sbjct: 280 APAIIFIDELDAIGTKRFDSELSGDREVQRTMLELLNQLDGFSTDDTVKVIAATNRPDTL 339 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L L S RL +++ P+++ +++ R++ + K + Sbjct: 340 DPAL--LRSGRLD--RKIELPHPNEESRARILQ--IHSRKMNVHKDV 380 >gi|188591563|ref|YP_001796162.1| transposase, IS21 family [Cupriavidus taiwanensis] gi|170938958|emb|CAP63965.1| transposase, IS21 family [Cupriavidus taiwanensis LMG 19424] Length = 273 Score = 48.6 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 50/150 (33%), Gaps = 30/150 (20%) Query: 29 FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS 88 F F +V A A+ DSW ++L GP G GK+ L + Sbjct: 79 SFDFGMVP-------MVSKAHVMALATGDSWLE-KGATILLFGPPGGGKTHLGSGIGHAL 130 Query: 89 RSTRFSNIAKSLDSIL------------------IDTRKPVLLEDIDLLDFNDTQ---LF 127 + + I+ +D ++L+D+ + + + LF Sbjct: 131 IDAGYRVLFTRTSEIVQKLQVARQSLQLPSMLGKLDRFDLIILDDLSYVRKDQAETSVLF 190 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 +I + SLL+TA W PD Sbjct: 191 ELI-AERYERRSLLITANQPFSGWNDVFPD 219 >gi|15966880|ref|NP_387233.1| transposase [Sinorhizobium meliloti 1021] gi|15076153|emb|CAC47706.1| Putative transposase number 2 for insertion sequence ISRm27 [Sinorhizobium meliloti 1021] Length = 247 Score = 48.6 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 53/134 (39%), Gaps = 23/134 (17%) Query: 45 VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI---------WS-------DKS 88 V A A+ DSW + ++L GP G GKS LA W D Sbjct: 89 VSKAQVMAIAAGDSWLA-KGASILLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLV 147 Query: 89 RSTRFSNIAKSLDSIL--IDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMT 143 + + + L+S + +D ++L+D+ + + + LF +I S S+++T Sbjct: 148 QKLQVARRELQLESAIAKLDKFDLLILDDLAYVTKDQAETSVLFELI-SARYERRSIMIT 206 Query: 144 ARTFPVSWGVCLPD 157 A W PD Sbjct: 207 ANQPFGEWNRVFPD 220 >gi|320160096|ref|YP_004173320.1| hypothetical protein ANT_06860 [Anaerolinea thermophila UNI-1] gi|319993949|dbj|BAJ62720.1| hypothetical protein ANT_06860 [Anaerolinea thermophila UNI-1] Length = 473 Score = 48.6 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 53/151 (35%), Gaps = 34/151 (22%) Query: 50 EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL----- 104 E A ++ W ++L G G GK+ LA + S + + +L Sbjct: 311 EIAYEFAENPRGW----LVLSGDYGCGKTHLAAAIGNYQASLGNPPLFVVVPDLLDHLRS 366 Query: 105 ----------------IDTRKPVLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTAR 145 + + K ++L+D+ + +L+ IIN + + ++T Sbjct: 367 TFSPTSNVSYDEVFEEVRSAKLLILDDLGTQSATPWAREKLYQIINHRYIAELPTVITTS 426 Query: 146 TFPVSWGVCLPDLCSRL---KAATVVKISLP 173 + P P + SR+ + T I P Sbjct: 427 SKPEEID---PRIRSRMLDRRLCTWFAIQAP 454 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 56/153 (36%), Gaps = 29/153 (18%) Query: 48 AIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL--- 104 ++E A + + ++L+G G GK+ LA + ++ S + ++ +L Sbjct: 113 SLENAFEQAQKYAHSLNGWLLLIGGYGVGKTHLAAAIAHEAVSLGVPTLFLTVPDLLDWL 172 Query: 105 -----------------IDTRKPVLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTA 144 I + ++L+D+ + + +L+ I N + + S ++T Sbjct: 173 RYAYDAPDDTFEARFEEIRNIRLLVLDDLGTQNATAWAQEKLYQIFNHRYIHRLSTVITT 232 Query: 145 RTFPVSWGVCLPDLCSRLK---AATVVKISLPD 174 + SRL+ V+I D Sbjct: 233 NQALEEIEGRI---QSRLRDIELVNTVRIEAQD 262 >gi|256840534|ref|ZP_05546042.1| recombination factor protein RarA [Parabacteroides sp. D13] gi|256737806|gb|EEU51132.1| recombination factor protein RarA [Parabacteroides sp. D13] Length = 423 Score = 48.6 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 55/138 (39%), Gaps = 21/138 (15%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDT---------RKP 110 IL GP G GK+ LA I ++K + + S+ K + ++ Sbjct: 41 PSFILWGPPGVGKTTLAQIIANKLDAPFYTLSAISSGVKDVREVIEKAKSNRFFNTVSPI 100 Query: 111 VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 + +++I + ++N++ + L+ A T S+ V P L SR V + Sbjct: 101 LFIDEIHRFSKSQQD--SLLNAV-ETGVVTLIGATTENPSFEVIRP-LLSR---CQVYVL 153 Query: 171 SLPDDDFLEKVIVKMFAD 188 D + L ++ K A+ Sbjct: 154 KSLDKNDLLTLLHKAIAE 171 >gi|185132242|ref|NP_001117982.1| valosin containing protein [Oncorhynchus mykiss] gi|51949893|gb|AAU14869.1| valosin containing protein [Oncorhynchus mykiss] Length = 748 Score = 48.6 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 61/163 (37%), Gaps = 44/163 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 179 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 238 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + ++++D + QL +++ + Q ++M A P S Sbjct: 239 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDAA 298 Query: 155 L--------------PDLCSRLK--AATVVKISLPDDDFLEKV 181 L PD RL+ + L DD LE+V Sbjct: 299 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLSDDVDLEQV 341 Score = 39.4 bits (91), Expect = 0.49, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 452 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 508 >gi|158339873|ref|YP_001521043.1| transposase-associated ATP-binding protein, putative [Acaryochloris marina MBIC11017] gi|158340240|ref|YP_001521410.1| transposase-associated ATP-binding protein, putative [Acaryochloris marina MBIC11017] gi|158340868|ref|YP_001522036.1| transposase-associated ATP-binding protein, putative [Acaryochloris marina MBIC11017] gi|158341505|ref|YP_001522669.1| transposase-associated ATP-binding protein, putative [Acaryochloris marina MBIC11017] gi|158341575|ref|YP_001522739.1| transposase-associated ATP-binding protein, putative [Acaryochloris marina MBIC11017] gi|158310114|gb|ABW31729.1| transposase-associated ATP-binding protein, putative [Acaryochloris marina MBIC11017] gi|158310481|gb|ABW32096.1| transposase-associated ATP-binding protein, putative [Acaryochloris marina MBIC11017] gi|158311109|gb|ABW32722.1| transposase-associated ATP-binding protein, putative [Acaryochloris marina MBIC11017] gi|158311746|gb|ABW33355.1| transposase-associated ATP-binding protein, putative [Acaryochloris marina MBIC11017] gi|158311816|gb|ABW33425.1| transposase-associated ATP-binding protein, putative [Acaryochloris marina MBIC11017] Length = 243 Score = 48.6 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 49/146 (33%), Gaps = 36/146 (24%) Query: 30 FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLA----- 81 F F C + + + + P W +IL GPSG GK+ LA Sbjct: 57 FDFSHCPQL----------NPAPLMQLAADPGWLERAENCLIL-GPSGVGKTHLATGVSK 105 Query: 82 ---------NIWSDKSRSTRFSNIAKSLDSIL----IDTRKPVLLEDIDLLDFNDTQ--- 125 ++ + + L +D ++L+D+ ++ + Sbjct: 106 KMLEFGKRVKFFAANALVQQLQQAKLQLQLHPMLKKLDRYDLLILDDLGYCKKSEAETSV 165 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSW 151 LF +I + SLL+TA W Sbjct: 166 LFELI-AHRYERKSLLITANQPFSQW 190 >gi|183220685|ref|YP_001838681.1| recombination factor protein RarA [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910786|ref|YP_001962341.1| recombination factor protein RarA [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775462|gb|ABZ93763.1| helicase-like ATPase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779107|gb|ABZ97405.1| Putative ATPase involved in DNA replication [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 419 Score = 48.6 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 89/234 (38%), Gaps = 35/234 (14%) Query: 25 EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 +Q+ + + + + + + A+R I S ++ GP G+GK+ LA++ Sbjct: 8 SKQVPLAHLVRPK-TWSEFVGQTKVVAALRSITKPTS-----ILFYGPPGTGKTTLAHLL 61 Query: 85 SDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT-QLFHIINSIH 134 ++ + ++ + + L+ + L++I + L S Sbjct: 62 AESWKLEKRYLSCVTSGVKEVREVLEEGKRLGTIVLFLDEIHRFSSSQQDALL----SAV 117 Query: 135 QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI----SLPDDDFLEKVIVKMFADRQ 190 + +L+ A T S+ V L SR+ V ++ +D + K +R Sbjct: 118 EEGEIILIAATTENPSFRVNKA-LLSRM---LVYRLTTLTEEEEDQIFLSCLEKQNTNR- 172 Query: 191 IFIDKKLAAYIVQRMERSLVFAEKLVDKMDN--LALSRGMGITRSLAAEVLKET 242 I + + + + RS A KL+ ++ A G IT +E+L +T Sbjct: 173 -TISETVKQELFR---RSAGDARKLLGYLERILFATKEGEAITDERLSEILGDT 222 >gi|325184659|emb|CCA19151.1| hypothetical protein SELMODRAFT_145748 [Albugo laibachii Nc14] Length = 799 Score = 48.6 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 66/164 (40%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R V+L GP GSGK+ +A ++++ + F SN+ K+ + + Sbjct: 233 PPRGVLLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 292 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + Q + +++ A P S Sbjct: 293 APAIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKQRANVVVIGATNRPNSMD-- 350 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PD+ + ++ + R + + + Sbjct: 351 -PALR-RFGRFDREIDIGVPDE--IGRLEIFRIHTRNMKLADDV 390 Score = 40.1 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 506 PSRGVLFYGPPGCGKTLLAKAVANECQANFISVKGPELLTMWFGESEANVREVFDKA 562 >gi|18129327|emb|CAC83487.1| DnaA protein [Wolbachia endosymbiont of Onchocerca volvulus] Length = 141 Score = 48.6 bits (115), Expect = 9e-04, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 38/88 (43%), Gaps = 1/88 (1%) Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218 SRL V I+ + ++ I++ + ++ + ++ ++ E ++K Sbjct: 3 KSRLGWGLVADINETTFELRLGILQIKVEQMNIYVPDDVLEFLAKNIKSNIRELEGALNK 62 Query: 219 MDNLALSRGMGITRSLAAEVLKETQQCD 246 + + +L G IT A+E L + + + Sbjct: 63 VVHTSLI-GRSITVESASETLADLLRSN 89 >gi|315444680|ref|YP_004077559.1| recombination protein MgsA [Mycobacterium sp. Spyr1] gi|315262983|gb|ADT99724.1| Recombination protein MgsA [Mycobacterium sp. Spyr1] Length = 446 Score = 48.6 bits (115), Expect = 9e-04, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 65/175 (37%), Gaps = 30/175 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVL--------L 113 VIL GP G+GK+ LA++ S + + K + +++ R+ + + Sbjct: 63 VILYGPPGTGKTTLASMISQATGRRFEALSALAAGVKEVRAVIDVARQAAVRGEQTVLFI 122 Query: 114 EDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +++ L + + LL+ A T S+ V P L SR + ++++ Sbjct: 123 DEVHRFSKTQQDALL----AAVENRVVLLVAATTENPSFSVVAP-LLSR---SLILQLQP 174 Query: 173 PDDDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 + VI + D R + + +V S A + + ++ Sbjct: 175 LTPADVTTVIRRAITDERGLGGRVTVSDDAIEQLVL---LSAGDARRALTALEVA 226 >gi|260811638|ref|XP_002600529.1| hypothetical protein BRAFLDRAFT_276686 [Branchiostoma floridae] gi|229285816|gb|EEN56541.1| hypothetical protein BRAFLDRAFT_276686 [Branchiostoma floridae] Length = 718 Score = 48.6 bits (115), Expect = 9e-04, Method: Composition-based stats. Identities = 40/202 (19%), Positives = 74/202 (36%), Gaps = 54/202 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G GK+ +A ++++ + F SN+ K+ + + Sbjct: 151 PPRGILLYGPPGVGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 210 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + Q ++M A P S Sbjct: 211 APAIIFIDEIDAIAPKRDKTHGEVERRIVSQLLTLMDGLKQRAHVVVMAATNRPNSIDAA 270 Query: 155 L--------------PDLCSRLK--AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198 L PD RL+ + L DD LE+V ++ + LA Sbjct: 271 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV----ASETHGHVGSDLA 326 Query: 199 AYIVQRMERSLVFAEKLVDKMD 220 A S +++ +KMD Sbjct: 327 ALC------SEAALQQIREKMD 342 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 424 PSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKA 480 >gi|158341448|ref|YP_001522613.1| transposase-associated ATP-binding protein, putative [Acaryochloris marina MBIC11017] gi|158311689|gb|ABW33299.1| transposase-associated ATP-binding protein, putative [Acaryochloris marina MBIC11017] Length = 231 Score = 48.6 bits (115), Expect = 9e-04, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 49/146 (33%), Gaps = 36/146 (24%) Query: 30 FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLA----- 81 F F C + + + + P W +IL GPSG GK+ LA Sbjct: 45 FDFSHCPQL----------NPAPLMQLAADPGWLERAENCLIL-GPSGVGKTHLATGVSK 93 Query: 82 ---------NIWSDKSRSTRFSNIAKSLDSIL----IDTRKPVLLEDIDLLDFNDTQ--- 125 ++ + + L +D ++L+D+ ++ + Sbjct: 94 KMLEFGKRVKFFAANALVQQLQQAKLQLQLHPMLKKLDRYDLLILDDLGYCKKSEAETSV 153 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSW 151 LF +I + SLL+TA W Sbjct: 154 LFELI-AHRYERKSLLITANQPFSQW 178 >gi|289450570|ref|YP_003475446.1| recombination factor protein RarA [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185117|gb|ADC91542.1| recombination factor protein RarA [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 433 Score = 48.2 bits (114), Expect = 9e-04, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 65/171 (38%), Gaps = 27/171 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKS-----RSTRFSNIAKSLDSILIDTRKPVLL-EDIDLLD 120 +IL GP G+GKS LA + + + R + + I+ D P+L E +L Sbjct: 43 IILFGPPGTGKSSLAKVIAATTKLPFKRLNAVTAGVTDIKQIIADAANPLLTPEGQVILF 102 Query: 121 FNDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 ++ H N + + +L+ A T + V L SR ATV ++ Sbjct: 103 IDEI---HRFNKLQQDALLPSVEAGLVILIGATTENPYFEVNKA-LISR---ATVFQLFP 155 Query: 173 PDD-DFLEKVIVKMFADRQIF-----IDKKLAAYIVQRMERSLVFAEKLVD 217 + D L + + ++R + +++ +I A ++ Sbjct: 156 LSETDILTILRRSLTSERGLAAWQAEVEETALQFIANHCNGDARIALNALE 206 >gi|15609696|ref|NP_217075.1| recombination factor protein RarA [Mycobacterium tuberculosis H37Rv] gi|15842097|ref|NP_337134.1| recombination factor protein RarA [Mycobacterium tuberculosis CDC1551] gi|148662398|ref|YP_001283921.1| recombination factor protein RarA [Mycobacterium tuberculosis H37Ra] gi|148823755|ref|YP_001288509.1| recombination factor protein RarA [Mycobacterium tuberculosis F11] gi|167968830|ref|ZP_02551107.1| recombination factor protein RarA [Mycobacterium tuberculosis H37Ra] gi|215404508|ref|ZP_03416689.1| recombination factor protein RarA [Mycobacterium tuberculosis 02_1987] gi|215412332|ref|ZP_03421092.1| recombination factor protein RarA [Mycobacterium tuberculosis 94_M4241A] gi|215446810|ref|ZP_03433562.1| recombination factor protein RarA [Mycobacterium tuberculosis T85] gi|218754298|ref|ZP_03533094.1| recombination factor protein RarA [Mycobacterium tuberculosis GM 1503] gi|253798360|ref|YP_003031361.1| hypothetical protein TBMG_01413 [Mycobacterium tuberculosis KZN 1435] gi|254232680|ref|ZP_04926007.1| conserved hypothetical alanine leucine valine rich protein [Mycobacterium tuberculosis C] gi|254551610|ref|ZP_05142057.1| recombination factor protein RarA [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|289553651|ref|ZP_06442861.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis KZN 605] gi|289746351|ref|ZP_06505729.1| recombination factor protein RarA [Mycobacterium tuberculosis 02_1987] gi|289758688|ref|ZP_06518066.1| recombination factor protein RarA [Mycobacterium tuberculosis T85] gi|289762729|ref|ZP_06522107.1| conserved hypothetical alanine leucine valine rich protein [Mycobacterium tuberculosis GM 1503] gi|294994330|ref|ZP_06800021.1| recombination factor protein RarA [Mycobacterium tuberculosis 210] gi|297635170|ref|ZP_06952950.1| recombination factor protein RarA [Mycobacterium tuberculosis KZN 4207] gi|297732162|ref|ZP_06961280.1| recombination factor protein RarA [Mycobacterium tuberculosis KZN R506] gi|298526033|ref|ZP_07013442.1| conserved hypothetical alanine leucine valine rich protein [Mycobacterium tuberculosis 94_M4241A] gi|306776833|ref|ZP_07415170.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis SUMu001] gi|306780598|ref|ZP_07418935.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis SUMu002] gi|306785361|ref|ZP_07423683.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis SUMu003] gi|306789961|ref|ZP_07428283.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis SUMu004] gi|306794041|ref|ZP_07432343.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis SUMu005] gi|306798440|ref|ZP_07436742.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis SUMu006] gi|306804319|ref|ZP_07440987.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis SUMu008] gi|306807642|ref|ZP_07444310.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis SUMu007] gi|306969843|ref|ZP_07482504.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis SUMu009] gi|306972948|ref|ZP_07485609.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis SUMu010] gi|307080659|ref|ZP_07489829.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis SUMu011] gi|307085246|ref|ZP_07494359.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis SUMu012] gi|313659496|ref|ZP_07816376.1| recombination factor protein RarA [Mycobacterium tuberculosis KZN V2475] gi|2496491|sp|Q50739|Y2559_MYCTU RecName: Full=Uncharacterized AAA domain-containing protein Rv2559c/MT2636 gi|1460081|emb|CAB01045.1| CONSERVED HYPOTHETICAL ALANINE LEUCINE VALINE RICH PROTEIN [Mycobacterium tuberculosis H37Rv] gi|13882379|gb|AAK46948.1| ATPase, AAA family [Mycobacterium tuberculosis CDC1551] gi|124601739|gb|EAY60749.1| conserved hypothetical alanine leucine valine rich protein [Mycobacterium tuberculosis C] gi|148506550|gb|ABQ74359.1| conserved hypothetical alanine,leucine and valine rich protein [Mycobacterium tuberculosis H37Ra] gi|148722282|gb|ABR06907.1| conserved alanine, leucine and valine rich protein [Mycobacterium tuberculosis F11] gi|253319863|gb|ACT24466.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis KZN 1435] gi|289438283|gb|EFD20776.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis KZN 605] gi|289686879|gb|EFD54367.1| recombination factor protein RarA [Mycobacterium tuberculosis 02_1987] gi|289710235|gb|EFD74251.1| conserved hypothetical alanine leucine valine rich protein [Mycobacterium tuberculosis GM 1503] gi|289714252|gb|EFD78264.1| recombination factor protein RarA [Mycobacterium tuberculosis T85] gi|298495827|gb|EFI31121.1| conserved hypothetical alanine leucine valine rich protein [Mycobacterium tuberculosis 94_M4241A] gi|308214760|gb|EFO74159.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis SUMu001] gi|308326532|gb|EFP15383.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis SUMu002] gi|308329953|gb|EFP18804.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis SUMu003] gi|308333570|gb|EFP22421.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis SUMu004] gi|308337597|gb|EFP26448.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis SUMu005] gi|308341263|gb|EFP30114.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis SUMu006] gi|308345964|gb|EFP34815.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis SUMu007] gi|308349070|gb|EFP37921.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis SUMu008] gi|308352653|gb|EFP41504.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis SUMu009] gi|308357638|gb|EFP46489.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis SUMu010] gi|308361580|gb|EFP50431.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis SUMu011] gi|308365200|gb|EFP54051.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis SUMu012] gi|323718832|gb|EGB27988.1| hypothetical protein TMMG_02570 [Mycobacterium tuberculosis CDC1551A] gi|326904174|gb|EGE51107.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis W-148] gi|328458130|gb|AEB03553.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis KZN 4207] Length = 452 Score = 48.2 bits (114), Expect = 9e-04, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 64/156 (41%), Gaps = 27/156 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVL--------L 113 VIL GP GSGK+ LA + S + S K + +++ ++RK +L + Sbjct: 68 VILYGPPGSGKTTLAALISQATGRRFEALSALSAGVKEVRAVIENSRKALLHGEQTVLFI 127 Query: 114 EDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +++ L S ++ LL+ A T S+ V P L SR + ++++ Sbjct: 128 DEVHRFSKTQQDALL----SAVEHRVVLLVAATTENPSFSVVAP-LLSR---SLILQLRP 179 Query: 173 PDDDFLEKVIVKMFAD-----RQIFIDKKLAAYIVQ 203 + V+ + D R + + + +VQ Sbjct: 180 LTAEDTRAVVQRAIDDPRGLGRAVAVAPEAVDLLVQ 215 >gi|158339520|ref|YP_001520909.1| transposase-associated ATP-binding protein, putative [Acaryochloris marina MBIC11017] gi|158339666|ref|YP_001520673.1| transposase-associated ATP-binding protein, putative [Acaryochloris marina MBIC11017] gi|158340521|ref|YP_001521515.1| transposase-associated ATP-binding protein, putative [Acaryochloris marina MBIC11017] gi|158309761|gb|ABW31377.1| transposase-associated ATP-binding protein, putative [Acaryochloris marina MBIC11017] gi|158309907|gb|ABW31523.1| transposase-associated ATP-binding protein, putative [Acaryochloris marina MBIC11017] gi|158310762|gb|ABW32376.1| transposase-associated ATP-binding protein, putative [Acaryochloris marina MBIC11017] Length = 243 Score = 48.2 bits (114), Expect = 9e-04, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 49/146 (33%), Gaps = 36/146 (24%) Query: 30 FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLA----- 81 F F C + + + + P W +IL GPSG GK+ LA Sbjct: 57 FDFSHCPQL----------NPAPLMQLAADPGWLERAENCLIL-GPSGVGKTHLATGVSK 105 Query: 82 ---------NIWSDKSRSTRFSNIAKSLDSIL----IDTRKPVLLEDIDLLDFNDTQ--- 125 ++ + + L +D ++L+D+ ++ + Sbjct: 106 KMLEFGKRVKFFAANALVQQLQQAKLQLQLHPMLKKLDRYDLLILDDLGYCKKSEAETSV 165 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSW 151 LF +I + SLL+TA W Sbjct: 166 LFELI-AHRYERKSLLITANQPFSQW 190 >gi|78213812|ref|YP_382591.1| fused recombination factor protein RarA/unknown domain-containing protein [Synechococcus sp. CC9605] gi|78198271|gb|ABB36036.1| ATPase [Synechococcus sp. CC9605] Length = 721 Score = 48.2 bits (114), Expect = 9e-04, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 64/170 (37%), Gaps = 24/170 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA I ++ +R+ S A + T + ++ T L Sbjct: 57 LILHGPPGVGKTTLARIIANHTRAHFSSLNAVLAGVKNLRTEVDAARQRLERHGLR-TIL 115 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H NS + + L+ A T + V L SR + + ++ + Sbjct: 116 FIDEVHRFNSAQQDALLPWVENGTVTLIGATTENPYFEVNKA-LVSR---SRLFRLLPLE 171 Query: 175 DDFLEKVIVKMFA-------DRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 + L++++ + A DR I I A ++V ++ Sbjct: 172 PEDLQRLLQRALADNERGYGDRAIAISSDAANHLVDVAGGDARSLLNALE 221 >gi|240143952|ref|ZP_04742553.1| ATPase, AAA family [Roseburia intestinalis L1-82] gi|257203986|gb|EEV02271.1| ATPase, AAA family [Roseburia intestinalis L1-82] gi|291534968|emb|CBL08080.1| ATPase related to the helicase subunit of the Holliday junction resolvase [Roseburia intestinalis M50/1] gi|291539530|emb|CBL12641.1| ATPase related to the helicase subunit of the Holliday junction resolvase [Roseburia intestinalis XB6B4] Length = 443 Score = 48.2 bits (114), Expect = 9e-04, Method: Composition-based stats. Identities = 37/207 (17%), Positives = 78/207 (37%), Gaps = 47/207 (22%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G+GK+ LA + ++ + + A S + ED+ N+ + Sbjct: 55 IILYGPPGTGKTTLAKVIANSTSAEFLQMNATSAGKKDM--------EDVIAKAKNNMGM 106 Query: 127 F-----------HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 F H N + + +L+ A T + V L SR + + Sbjct: 107 FGKKTILFIDEIHRFNKGQQDYLLPFVEDGTIILIGATTENPYFEVNGA-LLSR---SII 162 Query: 168 VKISLPDDDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 ++ + + ++ +I++ D Q ID+ ++ + S A + ++ Sbjct: 163 FELKSLEKEDIKTLILRAVNDTQKGMGAYHAVIDEDALDFLA---DISNGDARAALTAVE 219 Query: 221 NLALSRGMG------ITRSLAAEVLKE 241 L+ IT S+A+E +++ Sbjct: 220 LGILTTERSGDGLIHITLSVASECIQK 246 >gi|18129335|emb|CAC83491.1| DnaA protein [Wolbachia endosymbiont of Wuchereria bancrofti] Length = 135 Score = 48.2 bits (114), Expect = 9e-04, Method: Composition-based stats. Identities = 14/101 (13%), Positives = 40/101 (39%), Gaps = 1/101 (0%) Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 P + SRL V I+ + ++ +++ + + ++ + + Sbjct: 1 RSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQAKVEQMNMYVPQDVLEFLARNI 60 Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 ++ E ++K+ + +L G +T A+E L + + + Sbjct: 61 RSNIRELEGALNKVAHTSLI-GRSMTVESASETLMDLLRSN 100 >gi|156098805|ref|XP_001615418.1| 26S protease subunit regulatory subunit 6a [Plasmodium vivax SaI-1] gi|148804292|gb|EDL45691.1| 26S protease subunit regulatory subunit 6a, putative [Plasmodium vivax] Length = 441 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 63/167 (37%), Gaps = 38/167 (22%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++ +T L + I ++ Sbjct: 221 PPKGVLMHGPPGTGKTLLARACASQTNATFLKLAGPQLVQMFIGDGAKMVRDAFNLAKEK 280 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151 ++++D + + ++N + D+ ++ A P + Sbjct: 281 APAIIFIDELDAIGTKRFDSELSGDREVQRTMLELLNQLDGFSTDDTVKVIAATNRPDTL 340 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L L S RL +++ P+++ +++ R++ + K + Sbjct: 341 DPAL--LRSGRLD--RKIELPHPNEESRARILQ--IHSRKMNVHKDV 381 >gi|307265951|ref|ZP_07547499.1| AAA ATPase central domain protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306919015|gb|EFN49241.1| AAA ATPase central domain protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 443 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 57/143 (39%), Gaps = 24/143 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA I ++ + S FS + + I K ++D + T Sbjct: 56 MILWGPPGVGKTTLAMIIANMTNSKFITFSAVLSGIKEIKEIMAKA----ELDAMYGTRT 111 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +F H N + + +L+ A T S+ V L SR + V + Sbjct: 112 VVFIDEIHRFNKAQQDAFLPHVEKGNIILIGATTENPSFEVNSA-LLSR---SKVFVMKP 167 Query: 173 PDDDFLEKVIVKMFAD--RQIFI 193 ++ L ++ + D R + + Sbjct: 168 LTEEDLLVLLKRALRDKERGLGM 190 >gi|148264914|ref|YP_001231620.1| IstB ATP binding domain-containing protein [Geobacter uraniireducens Rf4] gi|146398414|gb|ABQ27047.1| IstB domain protein ATP-binding protein [Geobacter uraniireducens Rf4] Length = 245 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 58/148 (39%), Gaps = 33/148 (22%) Query: 32 FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVV------ILVGPSGSGKSCLANIWS 85 FP + R + E VR + + + I+VG +G+GK+ LA + Sbjct: 66 FPVDKDLDRFEFTASPVNEMQVRHL-----YSGNFLADHTNIIMVGGTGTGKTHLAIAIA 120 Query: 86 DKS-------RSTRFSNIAKSLDSILIDTRKPVLLEDI---DLLDFND-----------T 124 +S R ++ L+ +D R L E + DL+ ++ Sbjct: 121 KQSIRNGRKARFFNVLDLVNQLEQEKLDNRGGKLAEHLVRHDLVILDELGYLPFSKNGGQ 180 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWG 152 LFH+I+ +++ +SL++T W Sbjct: 181 LLFHLISKLYER-TSLIITTNLTFGEWP 207 >gi|257065126|ref|YP_003144798.1| Recombination protein MgsA [Slackia heliotrinireducens DSM 20476] gi|256792779|gb|ACV23449.1| Recombination protein MgsA [Slackia heliotrinireducens DSM 20476] Length = 439 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 63/172 (36%), Gaps = 28/172 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I GP G GK+ LA I + ++ + FS + + I ++ E+ + T Sbjct: 51 MIFWGPPGVGKTTLAQIIAHQTNAKFVNFSAVTSGIKEIRQVMKQA---EN-NRSLGEKT 106 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + + +L+ A T S+ V L SR V + Sbjct: 107 ILFVDEIHRFNKAQQDAFLPFVEKGTIILIGATTENPSFEVNGA-LLSR---CKVFVLKA 162 Query: 173 PDDDFLEKVIVKM------FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218 + L +++ + F D+Q+ + +L I A ++ Sbjct: 163 LETADLAELLDRAIHDPRGFGDQQVDVSDELLEAIATFANGDARTALSTLEM 214 >gi|159905162|ref|YP_001548824.1| AAA family ATPase [Methanococcus maripaludis C6] gi|159886655|gb|ABX01592.1| AAA family ATPase, CDC48 subfamily [Methanococcus maripaludis C6] Length = 781 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 33/198 (16%), Positives = 75/198 (37%), Gaps = 42/198 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + V+L GP G+GK+ LA ++++ + + N+ K + + Sbjct: 210 PPKGVLLAGPPGTGKTLLAKAVANEAGANFYTINGPEIMSKYVGETEENLRKIFEEAEEN 269 Query: 107 TRKPVLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + ++ QL +++ + +++ A P S + Sbjct: 270 SPSIIFIDEIDAVAPKRDEASGEVERRMVAQLLTLLDGLEGRGQVVILAATNRPDSIDMA 329 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK--------LAAYIVQRME 206 L RL I +PD +++ R + + + ++ + Sbjct: 330 LRR-PGRLDRELT--IGIPDRHARNEILQ--IHTRNMPLQPDYEKNEVIPVLNELIGEFD 384 Query: 207 RS-LVFAEKLVDKMDNLA 223 RS + KLV+K + A Sbjct: 385 RSKIESIVKLVEKASSEA 402 Score = 39.0 bits (90), Expect = 0.54, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 20/32 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + V+L GP G+GK+ LA +++S + S Sbjct: 540 PPKGVLLFGPPGTGKTLLAKAVANESEANFIS 571 >gi|332686848|ref|YP_004456622.1| ATPase [Melissococcus plutonius ATCC 35311] gi|332370857|dbj|BAK21813.1| uncharacterized ATPase (AAA family) associated with cysteine desulfurase [Melissococcus plutonius ATCC 35311] Length = 426 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 80/201 (39%), Gaps = 40/201 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117 +IL GP G+GK+ +A+ + + + R N A +D + +LL+++ Sbjct: 42 MILYGPPGTGKTSIASAIAGSTNYAFRMLNAATDTKKDLQIVVDEAKMSGTVILLLDEVH 101 Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 LD D L H+ + +L+ A T + P + SRL+ + ++ + Sbjct: 102 RLDKTKQDFLLPHL-----ESGKIILIGATTENPYISIN-PAIRSRLQ---IFELKPLTE 152 Query: 176 DFLEKVIVKMFADRQIFIDKKLAAYIV-------QRMERSLV-FAEKLVDKMDNLAL--- 224 +++ I+ + ++ L Y V + RS ++ + LA+ Sbjct: 153 QDIKQAIINALKNT----EQGLGEYPVVLEDEAFVHLSRSTNGDLRSALNGL-ELAVKST 207 Query: 225 ----SRGMGITRSLAAEVLKE 241 + + IT + E +++ Sbjct: 208 EKNEEQKIVITLPIIEECIQK 228 >gi|255015227|ref|ZP_05287353.1| recombination factor protein RarA [Bacteroides sp. 2_1_7] gi|262381155|ref|ZP_06074293.1| recombination factor protein RarA [Bacteroides sp. 2_1_33B] gi|298377584|ref|ZP_06987536.1| ATPase, AAA family [Bacteroides sp. 3_1_19] gi|262296332|gb|EEY84262.1| recombination factor protein RarA [Bacteroides sp. 2_1_33B] gi|298265603|gb|EFI07264.1| ATPase, AAA family [Bacteroides sp. 3_1_19] Length = 423 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 55/138 (39%), Gaps = 21/138 (15%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDT---------RKP 110 IL GP G GK+ LA I ++K + + S+ K + ++ Sbjct: 41 PSFILWGPPGVGKTTLAQIIANKLDAPFYTLSAISSGVKDVREVIEKAKSNRFFNTVSPI 100 Query: 111 VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 + +++I + ++N++ + L+ A T S+ V P L SR V + Sbjct: 101 LFIDEIHRFSKSQQD--SLLNAV-ETGVVTLIGATTENPSFEVIRP-LLSR---CQVYVL 153 Query: 171 SLPDDDFLEKVIVKMFAD 188 D + L ++ K A+ Sbjct: 154 KSLDKNDLLTLLHKAIAE 171 >gi|332983427|ref|YP_004464868.1| IstB domain-containing protein ATP-binding protein [Mahella australiensis 50-1 BON] gi|332701105|gb|AEE98046.1| IstB domain protein ATP-binding protein [Mahella australiensis 50-1 BON] Length = 228 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 55/146 (37%), Gaps = 32/146 (21%) Query: 49 IEQ--AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL-- 104 A +P+ + ++ GP G+GK+ LA +++ S +S I ++ IL Sbjct: 64 NAYKIAYEFATRFPN-VEKGLLFTGPVGTGKTHLAAAIANELISKLYSVIFGNVIDILTL 122 Query: 105 --------------------IDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLL 141 D ++++D+ + + ++ IIN +++ + ++ Sbjct: 123 VKSTYRRDSELTEAEMIRTFTDNVDILVIDDLGKENATENSTTVIYQIINRLYENERPII 182 Query: 142 MTARTFPVSWGVCLPD----LCSRLK 163 +T L + + SRL Sbjct: 183 VTTNFSSAVLRKKLGEKGDAIVSRLA 208 >gi|184155391|ref|YP_001843731.1| recombination factor protein RarA [Lactobacillus fermentum IFO 3956] gi|183226735|dbj|BAG27251.1| helicase [Lactobacillus fermentum IFO 3956] Length = 448 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 60/185 (32%), Gaps = 33/185 (17%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRF-------------SNIAKSLDSILIDTRKPV 111 +IL GP G GK+ LA I + K+++ + + + R V Sbjct: 53 PSLILWGPPGVGKTTLAEIIAQKTKAKFITFSAVNSSIKDIKQVMEAATANHQFGERTVV 112 Query: 112 LLEDIDLLDFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVK 169 +++I + F + +L+ T L SR V Sbjct: 113 FIDEIHRFNKAQQDAFLPY---VERGEIILIGATTENPSFELNAA---LLSR---CKVFV 163 Query: 170 ISLPDDDFLEKVIVKM------FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + D L K++ + FAD +I ++ + I A ++ ++ Sbjct: 164 LRALDKGALVKILHRALHHPNGFADLEITVEDGVLEAIANFAN---GDARMALNTLEMAV 220 Query: 224 LSRGM 228 L+ Sbjct: 221 LNGQR 225 >gi|325672565|ref|ZP_08152261.1| AAA family ATPase [Rhodococcus equi ATCC 33707] gi|325556442|gb|EGD26108.1| AAA family ATPase [Rhodococcus equi ATCC 33707] Length = 468 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 73/173 (42%), Gaps = 24/173 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDTRKPVL--------L 113 V+L GP G+GK+ LA++ S + + S K + ++ R+ +L + Sbjct: 82 VLLYGPPGTGKTTLASLISGATGRKFEALSALSAGVKEVRGVIELARRRLLQGEQTVLFI 141 Query: 114 EDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +++ L + + LL+ A T S+ V P L SR + V+++ Sbjct: 142 DEVHRFSKTQQDALL----AAVENRIVLLVAATTENPSFSVVSP-LLSR---SLVLQLQS 193 Query: 173 PDDDFLEKVIVKMFAD-RQIFIDKKLAAYIVQRMER-SLVFAEKLVDKMDNLA 223 D + VI + AD R + ++A ++ + R + A + + ++ A Sbjct: 194 LTSDDIRLVIERARADERGLGGAVEIADDALEHLVRLAAGDARRALTALEAAA 246 >gi|212703753|ref|ZP_03311881.1| hypothetical protein DESPIG_01801 [Desulfovibrio piger ATCC 29098] gi|212672721|gb|EEB33204.1| hypothetical protein DESPIG_01801 [Desulfovibrio piger ATCC 29098] Length = 453 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 23/171 (13%), Positives = 60/171 (35%), Gaps = 17/171 (9%) Query: 49 IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN-------------IWSDKSRSTRFSN 95 + A + P +L G G+GKS L + I + +R + Sbjct: 133 LAMARAVALREPG--HSPFLLHGEKGTGKSHLLHHMAAALARQDLRVILAPAARFFQHCP 190 Query: 96 IAKSLDSILIDTRKPVLLEDIDLLDFND--TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 + + + + L+DI L +L + + + +++ P G Sbjct: 191 LEEQTAPLFWQQADALFLDDIQTLGGQPRFQRLLAALLAHRPEKAPVVLALEGGPDVLGT 250 Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 P +R++ +++ PD + + + + + + + ++ + +R Sbjct: 251 WEPGPAARVRQLFSAELTPPDMEARMRYLQQCCRENALDLPREHLRLMARR 301 >gi|206895474|ref|YP_002247556.1| AAA ATPase, central region [Coprothermobacter proteolyticus DSM 5265] gi|206738091|gb|ACI17169.1| AAA ATPase, central region [Coprothermobacter proteolyticus DSM 5265] Length = 459 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 33/143 (23%), Positives = 63/143 (44%), Gaps = 28/143 (19%) Query: 67 VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL--DFN 122 ++L GP G GK+ +A + ++ K+R RFS + + I +LED ++ Sbjct: 57 LVLWGPPGVGKTSIAMVIANTTKARFLRFSAVTSGIKEIKE------VLEDAEVQFNMGR 110 Query: 123 DTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 T +F H N + + +L+ A T S+ + P L SR + VV + Sbjct: 111 RTVIFVDEIHHFNKTQQDAFLPYVEKGAVVLICATTENPSFEIISP-LLSR---SKVVVL 166 Query: 171 SLPDDDFLEKVIVKMFAD--RQI 191 + + ++ ++ + AD R + Sbjct: 167 EPLEAEDIKTILYRALADKERGL 189 >gi|301311175|ref|ZP_07217103.1| ATPase, AAA family [Bacteroides sp. 20_3] gi|300830749|gb|EFK61391.1| ATPase, AAA family [Bacteroides sp. 20_3] Length = 422 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 55/138 (39%), Gaps = 21/138 (15%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDT---------RKP 110 IL GP G GK+ LA I ++K + + S+ K + ++ Sbjct: 40 PSFILWGPPGVGKTTLAQIIANKLDAPFYTLSAISSGVKDVREVIEKAKSNRFFNTVSPI 99 Query: 111 VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 + +++I + ++N++ + L+ A T S+ V P L SR V + Sbjct: 100 LFIDEIHRFSKSQQD--SLLNAV-ETGVVTLIGATTENPSFEVIRP-LLSR---CQVYVL 152 Query: 171 SLPDDDFLEKVIVKMFAD 188 D + L ++ K A+ Sbjct: 153 KSLDKNDLLTLLHKAIAE 170 >gi|255284526|ref|ZP_05349081.1| putative transcriptional regulator [Bryantella formatexigens DSM 14469] gi|255264939|gb|EET58144.1| putative transcriptional regulator [Bryantella formatexigens DSM 14469] Length = 232 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 23/142 (16%), Positives = 49/142 (34%), Gaps = 16/142 (11%) Query: 66 VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI---LIDTRKPVLLEDIDLLDFN 122 V L G +G+GK+ L + + +S + + + V+++D+ + Sbjct: 40 VAYLYGVTGTGKTRLVREVFARKQYEYYSARETQPEEVGVKPDGQERIVVVDDLYTVTLQ 99 Query: 123 D-----TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 + LF Q L++ +R W + L R++ V+I D Sbjct: 100 EIKECWAALFR--KLAGQEGVRLVLVSRAPVPGWLIPL-----RVEY-RFVEIGEKDLCL 151 Query: 178 LEKVIVKMFADRQIFIDKKLAA 199 + I ++ + A Sbjct: 152 TRRGQDAYLELSGIRLEPETAD 173 >gi|315658102|ref|ZP_07910974.1| AAA family ATPase [Staphylococcus lugdunensis M23590] gi|315496431|gb|EFU84754.1| AAA family ATPase [Staphylococcus lugdunensis M23590] Length = 422 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 33/200 (16%), Positives = 75/200 (37%), Gaps = 39/200 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117 +I GP G GK+ +A S + + ++ ++ + + +LL++I Sbjct: 43 MIFYGPPGIGKTSIAKAISGSTAYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIH 102 Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 L D L H+ N +L+ T + P + SR A + ++ Sbjct: 103 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 151 Query: 174 DDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 +++ ++ +++ D R + ID+ Y + S ++ ++ LS Sbjct: 152 NEEDIKVALMRAIEDDSRGLASYHPHIDEDAIEYFSTQ---SQGDVRSALNALELAVLSA 208 Query: 227 -----GMGITRSLAAEVLKE 241 +T + A + L++ Sbjct: 209 DEDNGERHVTLTDAQDCLQK 228 >gi|31793742|ref|NP_856235.1| recombination factor protein RarA [Mycobacterium bovis AF2122/97] gi|121638444|ref|YP_978668.1| recombination factor protein RarA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|215427955|ref|ZP_03425874.1| recombination factor protein RarA [Mycobacterium tuberculosis T92] gi|215431517|ref|ZP_03429436.1| recombination factor protein RarA [Mycobacterium tuberculosis EAS054] gi|219558563|ref|ZP_03537639.1| recombination factor protein RarA [Mycobacterium tuberculosis T17] gi|224990938|ref|YP_002645625.1| recombination factor protein [Mycobacterium bovis BCG str. Tokyo 172] gi|260187574|ref|ZP_05765048.1| recombination factor protein RarA [Mycobacterium tuberculosis CPHL_A] gi|260201686|ref|ZP_05769177.1| recombination factor protein RarA [Mycobacterium tuberculosis T46] gi|260205881|ref|ZP_05773372.1| recombination factor protein RarA [Mycobacterium tuberculosis K85] gi|289444095|ref|ZP_06433839.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis T46] gi|289448208|ref|ZP_06437952.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis CPHL_A] gi|289570728|ref|ZP_06450955.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis T17] gi|289575267|ref|ZP_06455494.1| recombination factor protein RarA [Mycobacterium tuberculosis K85] gi|289751178|ref|ZP_06510556.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis T92] gi|289754677|ref|ZP_06514055.1| recombination factor protein RarA [Mycobacterium tuberculosis EAS054] gi|31619336|emb|CAD94774.1| CONSERVED HYPOTHETICAL ALANINE LEUCINE VALINE RICH PROTEIN [Mycobacterium bovis AF2122/97] gi|121494092|emb|CAL72570.1| Conserved hypothetical alanine leucine valine rich protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224774051|dbj|BAH26857.1| recombination factor protein [Mycobacterium bovis BCG str. Tokyo 172] gi|289417014|gb|EFD14254.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis T46] gi|289421166|gb|EFD18367.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis CPHL_A] gi|289539698|gb|EFD44276.1| recombination factor protein RarA [Mycobacterium tuberculosis K85] gi|289544482|gb|EFD48130.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis T17] gi|289691765|gb|EFD59194.1| conserved alanine, leucine valine rich protein [Mycobacterium tuberculosis T92] gi|289695264|gb|EFD62693.1| recombination factor protein RarA [Mycobacterium tuberculosis EAS054] Length = 452 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 64/156 (41%), Gaps = 27/156 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVL--------L 113 VIL GP GSGK+ LA + S + S K + +++ ++RK +L + Sbjct: 68 VILYGPPGSGKTTLAALISQATGRRFEALSALSAGVKEVRAVIENSRKALLHGEQTVLFI 127 Query: 114 EDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +++ L S ++ LL+ A T S+ V P L SR + ++++ Sbjct: 128 DEVHRFSKTQQDALL----SAVEHRVVLLVAATTENPSFSVVAP-LLSR---SLILQLRP 179 Query: 173 PDDDFLEKVIVKMFAD-----RQIFIDKKLAAYIVQ 203 + V+ + D R + + + +VQ Sbjct: 180 LTAEDTRAVVQRAIDDPRGLGRAVAVAPEAVDLLVQ 215 >gi|332799117|ref|YP_004460616.1| AAA ATPase central domain-containing protein [Tepidanaerobacter sp. Re1] gi|332696852|gb|AEE91309.1| AAA ATPase central domain protein [Tepidanaerobacter sp. Re1] Length = 445 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 28/182 (15%), Positives = 62/182 (34%), Gaps = 34/182 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS-------------TRFSNIAKSLDSILIDTRKPVLL 113 +IL GP G GK+ LA I ++K+ + + ++ + L R + + Sbjct: 59 MILWGPPGVGKTTLAKIIAEKTHAKFENFSAVLSGIKEIREVMKQAEERRLYGQRTLLFI 118 Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKIS 171 ++I + + F + +L+ T L SR + V ++ Sbjct: 119 DEIHRFNKSQQDAFLPF---VEKGDIILIGATTENPSFELNSA---LLSR---SKVFTLN 169 Query: 172 LPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 + + ++ + D R + I + + S A ++ ++ AL Sbjct: 170 PLKPENIILLLKRAIKDKERGLGKMNVDISDETLEKLAVY---SNGDARVALNTLELSAL 226 Query: 225 SR 226 Sbjct: 227 IA 228 >gi|218710024|ref|YP_002417645.1| recombination factor protein RarA [Vibrio splendidus LGP32] gi|218323043|emb|CAV19220.1| Hypothetical protein VS_2044 [Vibrio splendidus LGP32] Length = 451 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 43/202 (21%), Positives = 71/202 (35%), Gaps = 44/202 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G+GK+ LA + ++ + + R S + + I I K + T Sbjct: 56 MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKDIRIAIEKA----RENKQAGRRT 111 Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N Q D ++ T L SR A V K+ Sbjct: 112 ILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKL 165 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL------ 224 + + + + VI + D+Q + A + ++R +LV+ ++L Sbjct: 166 TSLNTEDISLVIRQAIEDKQRGLGDVTADFAGNVLDR----LAELVNGDARMSLNYLELL 221 Query: 225 --------SRGMGITRSLAAEV 238 IT L AEV Sbjct: 222 YDMAEDNDKGEKAITLQLLAEV 243 >gi|303252682|ref|ZP_07338845.1| recombination factor protein RarA [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302648650|gb|EFL78843.1| recombination factor protein RarA [Actinobacillus pleuropneumoniae serovar 2 str. 4226] Length = 446 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 40/203 (19%), Positives = 72/203 (35%), Gaps = 35/203 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I GP G+GK+ LA I + + R S + + I + ++ T Sbjct: 52 MIFWGPPGTGKTTLAEIIAHHFDAEVERLSAVTSGVKEIREAIERA----KLNRQTGRRT 107 Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N Q D +++ T L SR A + + Sbjct: 108 LLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNA---LLSR---AKIYIL 161 Query: 171 SLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + +V+ D R + +I+ + + + FA ++ M ++A Sbjct: 162 KPLQAVEIAQVLTNALYDKERGLGNESYYIEDNVIELLADYVNGDARFALNCLELMSDMA 221 Query: 224 LS--RGMGITRSLAAEVLKETQQ 244 +G + ++L AEVL E Q Sbjct: 222 EISPQGKRLNKALLAEVLGERQA 244 >gi|149204649|ref|ZP_01881614.1| ATP-dependent Zn protease [Roseovarius sp. TM1035] gi|149141908|gb|EDM29958.1| ATP-dependent Zn protease [Roseovarius sp. TM1035] Length = 742 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 41/234 (17%), Positives = 77/234 (32%), Gaps = 67/234 (28%) Query: 56 IDSWP----SWPS--RVVILVGPSGSGKSCLANIWSDKSRSTRFS--------------- 94 +++W +W +L GP G+GK+ LAN ++ + S Sbjct: 335 LNAWRTGALAWAEVTSSAVLYGPPGTGKTTLANAFAGSAGIPIISTSYADCQKHGHQGDM 394 Query: 95 --NIAKSLDSILIDTRKPVLLEDIDLLDFNDT-------------QLFHIINSIHQYDSS 139 + + + + ++++D DT L IN + Sbjct: 395 LRALDDAFATAKEAAPAVLFIDELDSFTQRDTPDYNGGYMRGVVNGLLEQINRAKDVEGL 454 Query: 140 LLMTART-----FPV---------SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 +L+ A P V LPD L+A K+ + + + + Sbjct: 455 VLLGATNELEAVDPAVIRSGRFDLKLHVPLPDKKG-LEAILTAKLGS--ETAIRLDLANL 511 Query: 186 FADRQIFIDKKLAAYIVQ------RMERSL-------VFAEKLVDKMDNLALSR 226 A R + +A IV+ R +R+ A+++V K+D L R Sbjct: 512 AA-RLLGQSGAVAEAIVRDALGRAREDRTTIRQNHLESAADQIVPKLDQEILRR 564 >gi|299783213|gb|ADJ41211.1| Recombination ATPase [Lactobacillus fermentum CECT 5716] Length = 448 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 60/185 (32%), Gaps = 33/185 (17%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRF-------------SNIAKSLDSILIDTRKPV 111 +IL GP G GK+ LA I + K+++ + + + R V Sbjct: 53 PSLILWGPPGVGKTTLAEIIAQKTKAKFITFSAVNSSIKDIKQVMEAATANHQFGERTVV 112 Query: 112 LLEDIDLLDFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVK 169 +++I + F + +L+ T L SR V Sbjct: 113 FIDEIHRFNKAQQDAFLPY---VERGEIILIGATTENPSFELNAA---LLSR---CKVFV 163 Query: 170 ISLPDDDFLEKVIVKM------FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + D L K++ + FAD +I ++ + I A ++ ++ Sbjct: 164 LRALDKGALVKILHRALHHPNGFADLEITVEDGVLEAIANFAN---GDARMALNTLEMAV 220 Query: 224 LSRGM 228 L+ Sbjct: 221 LNGQR 225 >gi|134046379|ref|YP_001097864.1| replication factor C large subunit [Methanococcus maripaludis C5] gi|166977384|sp|A4FZL6|RFCL_METM5 RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|132664004|gb|ABO35650.1| replication factor C large subunit [Methanococcus maripaludis C5] Length = 484 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 38/221 (17%), Positives = 74/221 (33%), Gaps = 44/221 (19%) Query: 45 VHSAIEQAVRLIDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNI 96 V + LI +W ++L GP GSGK+ LA+ + Sbjct: 16 VAGHNKTKQALI----NWIESFVNGQKQKPILLAGPPGSGKTTLAHAIAKDYAFDVIELN 71 Query: 97 A---------------KSLDSILIDTRKPVLLEDIDLLDFNDT--QLFHIINSIHQYDSS 139 A + L R ++L+++D L ND + II + ++ Sbjct: 72 ASDKRNKDVIAQVVGTAATSKSLTGKRTLIVLDEVDGLSGNDDRGGVAEIIKVLKTAENP 131 Query: 140 LLMTART--FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 +++TA P + ++ + + + V+ K+ ID+K+ Sbjct: 132 VILTANDVYKPALMTLR--------NNVNLINVGSVHTNSIPPVLRKIALKEGFEIDEKV 183 Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238 I S ++ D +L+ G + A E+ Sbjct: 184 IKTIASH---SGGDLRAAIN--DLQSLATGGSLEVEDAKEL 219 >gi|91773970|ref|YP_566662.1| AAA family ATPase, CDC48 subfamily protein [Methanococcoides burtonii DSM 6242] gi|91712985|gb|ABE52912.1| VCP-like ATPase, AAA family [Methanococcoides burtonii DSM 6242] Length = 738 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 31/208 (14%), Positives = 73/208 (35%), Gaps = 49/208 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + VIL GP G+GK+ +A +++SR+ + K + + Sbjct: 221 PPKGVILYGPPGTGKTLIAKAVANESRANFLYVAGPEIMGRFYGESEERLRKIFEEAAEN 280 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + + +++ A Sbjct: 281 APSIIFIDEIDSIAPKRENVTGEVERRVVAQLLTLMDGMEERGQIVVIAAT---NRLDSI 337 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL--------------AAY 200 P L + ++I +PD D +V+ R + + + + A Sbjct: 338 DPALRRPGRFDREIEIGVPDSDDRLEVLQ--IHSRGMPLAEDVDLEHLATYTQGFVGADL 395 Query: 201 IVQRMERSLVFAEKLV--DKMDNLALSR 226 + E S+ +++ +D +S+ Sbjct: 396 LSLVQEASMRALRRILPEINLDEEEISQ 423 Score = 37.1 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 8/28 (28%), Positives = 18/28 (64%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS 94 ++L GP G+GK+ +A ++++ + S Sbjct: 498 ILLYGPPGTGKTLIAQAVANEANANFIS 525 >gi|51892299|ref|YP_074990.1| Holliday junction DNA helicase RuvB [Symbiobacterium thermophilum IAM 14863] gi|68715427|sp|Q67Q97|RUVB_SYMTH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|51855988|dbj|BAD40146.1| Holliday junction DNA helicase RuvB [Symbiobacterium thermophilum IAM 14863] Length = 347 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 36/197 (18%), Positives = 76/197 (38%), Gaps = 27/197 (13%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P V+L GP G GK+ LA+I + + ++ L + D+L + Sbjct: 53 PLDHVLLYGPPGLGKTTLAHIIAHEMGVNLRITSGPAISHQGDLAAILTQLSEGDVLFVD 112 Query: 123 DTQLFHIINSIHQ-------YDSSL-LMTARTFPVS-WGVCLPD------------LCS- 160 + H +N + + D +L ++ + + LP L S Sbjct: 113 EI---HRLNRLVEETLYPAMEDFALDIILGKGPAARTLRLDLPRFTLIGATTRYGALTSP 169 Query: 161 -RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 R + V+++ ++ L +++++ + +D A I +R + A +L+ ++ Sbjct: 170 LRDRFGVVLQLQFYSEEELTRILMRAARILNVPLDPGGAREIARRSRGTPRVANRLLRRL 229 Query: 220 -DNLALSRGMGITRSLA 235 D + ITR +A Sbjct: 230 RDYAQVRADGVITRDVA 246 >gi|147669159|ref|YP_001213977.1| IstB ATP binding domain-containing protein [Dehalococcoides sp. BAV1] gi|146270107|gb|ABQ17099.1| replicative DNA helicase loader DnaI [Dehalococcoides sp. BAV1] Length = 469 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 57/156 (36%), Gaps = 35/156 (22%) Query: 50 EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID--- 106 E A+ + W ++ GPSG+GK+ LA +++ ST + K ++ D Sbjct: 114 EAALDFASNPAGW----LVFTGPSGAGKTHLAAAIANRRLSTGQPVLYKRASELIDDLKK 169 Query: 107 ------------------TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTAR 145 ++++D+ + ++ +L ++ + ++T Sbjct: 170 SFEPDSDAGYSQSFDILKNAPLLVIDDLTVQSGSEWSKEKLDQLLTYRFSQELPTIITLS 229 Query: 146 TFPVSWGVCLPDLCSRLKAATVVKI----SLPDDDF 177 T P + SRL ++ KI P+D Sbjct: 230 TPINELD---PRIQSRLLDKSISKIYTVAPNPEDSL 262 Score = 42.1 bits (98), Expect = 0.072, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 53/151 (35%), Gaps = 30/151 (19%) Query: 51 QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI-------------------WSDKSRST 91 A L + P ++ G +G GK+ LA+ + D RST Sbjct: 298 AAYNLALDFSRNPESWLVFQGETGCGKTHLASAIVNERYRQGKPAMFVVVPEFLDHLRST 357 Query: 92 RFSNIAKSLDSILIDTRKP--VLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTART 146 S D + + ++L+D + +L+ +IN + + ++T R Sbjct: 358 FSPESKTSYDQMFDAVKNAKLLVLDDFGEQSSTPWAQEKLYQVINYRYNRRLATVITTRC 417 Query: 147 FPVSWGVCLPDLCSRL---KAATVVKISLPD 174 V + SR + + V I+ P+ Sbjct: 418 QLSEIEVAI---SSRFVDPQISMVFNITAPN 445 >gi|146276369|ref|YP_001166528.1| transposase [Rhodobacter sphaeroides ATCC 17025] gi|146276989|ref|YP_001167148.1| transposase [Rhodobacter sphaeroides ATCC 17025] gi|146277868|ref|YP_001168027.1| transposase [Rhodobacter sphaeroides ATCC 17025] gi|146279516|ref|YP_001169674.1| transposase [Rhodobacter sphaeroides ATCC 17025] gi|145554610|gb|ABP69223.1| IstB domain protein ATP-binding protein [Rhodobacter sphaeroides ATCC 17025] gi|145555230|gb|ABP69843.1| IstB domain protein ATP-binding protein [Rhodobacter sphaeroides ATCC 17025] gi|145556109|gb|ABP70722.1| IstB domain protein ATP-binding protein [Rhodobacter sphaeroides ATCC 17025] gi|145557757|gb|ABP72369.1| hypothetical protein Rsph17025_3496 [Rhodobacter sphaeroides ATCC 17025] Length = 270 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 22/112 (19%) Query: 67 VILVGPSGSGKSCLANI---------WS-------DKSRSTRFSNIAKSLDSIL--IDTR 108 +++ GP G GKS LA W D + + + +L+ + +D Sbjct: 109 LLVFGPPGGGKSHLAAAIGLGLIENGWRVFFTRTTDLVQRLQVARRELALEQAIAKLDKY 168 Query: 109 KPVLLEDIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 ++L+D+ + + LF +I S S+L+TA W PD Sbjct: 169 HLLILDDLAYVTKDQAETSALFELI-SARYERRSILITANQPFGEWNRIFPD 219 >gi|260662096|ref|ZP_05862992.1| helicase [Lactobacillus fermentum 28-3-CHN] gi|260553479|gb|EEX26371.1| helicase [Lactobacillus fermentum 28-3-CHN] Length = 448 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 60/185 (32%), Gaps = 33/185 (17%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRF-------------SNIAKSLDSILIDTRKPV 111 +IL GP G GK+ LA I + K+++ + + + R V Sbjct: 53 PSLILWGPPGVGKTTLAEIIAQKTKAKFITFSAVNSSIKDIKQVMEAATANHQFGERTVV 112 Query: 112 LLEDIDLLDFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVK 169 +++I + F + +L+ T L SR V Sbjct: 113 FIDEIHRFNKAQQDAFLPY---VERGEIILIGATTENPSFELNAA---LLSR---CKVFV 163 Query: 170 ISLPDDDFLEKVIVKM------FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + D L K++ + FAD +I ++ + I A ++ ++ Sbjct: 164 LRALDKGALVKILHRALHHPNGFADLEITVEDGVLEAIANFAN---GDARMALNTLEMAV 220 Query: 224 LSRGM 228 L+ Sbjct: 221 LNGQR 225 >gi|302770400|ref|XP_002968619.1| hypothetical protein SELMODRAFT_61702 [Selaginella moellendorffii] gi|300164263|gb|EFJ30873.1| hypothetical protein SELMODRAFT_61702 [Selaginella moellendorffii] Length = 498 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 25/156 (16%), Positives = 53/156 (33%), Gaps = 36/156 (23%) Query: 67 VILVGPSGSGKSCLANIWSDKS---------------RSTRFSNIAKSLDSILIDTRKPV 111 ++L GP G GK+ LA ++++ FS I + R + Sbjct: 37 ILLHGPPGCGKTLLAYAIANEAEVPIRKVAPAELSSGAGKLFSTIRSIFADVATLARCVL 96 Query: 112 LLEDIDLLDFNDTQ-------------------LFHIINSIHQYDSSLLMTARTFPVSWG 152 LL++ID + L H+ ++ Q +++ T Sbjct: 97 LLDEIDAVAMKRDAARKDVDSRSLTQLMTCIDGLNHLWDASRQCAGHVIIVGTT--NRLE 154 Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 P L + + ++ PD+ ++++ + D Sbjct: 155 DIDPALRRSGRLTIEIALNAPDEQARKQILSVLTRD 190 >gi|302788184|ref|XP_002975861.1| hypothetical protein SELMODRAFT_51668 [Selaginella moellendorffii] gi|300156137|gb|EFJ22766.1| hypothetical protein SELMODRAFT_51668 [Selaginella moellendorffii] Length = 498 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 25/156 (16%), Positives = 53/156 (33%), Gaps = 36/156 (23%) Query: 67 VILVGPSGSGKSCLANIWSDKS---------------RSTRFSNIAKSLDSILIDTRKPV 111 ++L GP G GK+ LA ++++ FS I + R + Sbjct: 37 ILLHGPPGCGKTLLAYAIANEAEVPIRKVAPAELSSGAGKLFSTIRSIFADVATLARCVL 96 Query: 112 LLEDIDLLDFNDTQ-------------------LFHIINSIHQYDSSLLMTARTFPVSWG 152 LL++ID + L H+ ++ Q +++ T Sbjct: 97 LLDEIDAVAMKRDAARKDVDSRSLTQLMTCIDGLNHLWDASRQCAGHVIIVGTT--NRLE 154 Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 P L + + ++ PD+ ++++ + D Sbjct: 155 DIDPALRRSGRLTIEIALNAPDEQARKQMLSVLTRD 190 >gi|296218057|ref|XP_002755280.1| PREDICTED: 26S protease regulatory subunit 6A [Callithrix jacchus] Length = 447 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 227 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 286 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + + ++N + Q ++ + ++ A Sbjct: 287 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 346 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ +P+++ +++ R++ + + + R Sbjct: 347 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 400 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ ++ G T Sbjct: 401 GAQCKAVCVEAGMIALRRGAT 421 >gi|146304983|ref|YP_001192299.1| AAA family ATPase [Metallosphaera sedula DSM 5348] gi|145703233|gb|ABP96375.1| AAA family ATPase, CDC48 subfamily [Metallosphaera sedula DSM 5348] Length = 760 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 35/226 (15%), Positives = 74/226 (32%), Gaps = 59/226 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + V+L GP G GK+ LA +++ + + + D + Sbjct: 217 PPKGVLLYGPPGVGKTLLARALANEIGAYFVTINGPEIMSKFYGESEQRLREIFDDADKN 276 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP--VSWG 152 + +++ID + QL +++ I +++ A P V Sbjct: 277 APSIIFIDEIDAIAPKREEVTGEVEKRVVSQLLTLMDGIKGRGRIVVIGATNRPDAVDQA 336 Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL--------------- 197 + P R ++I PD ++++ R + + + Sbjct: 337 LRRP---GRFD--REIEIRPPDTKARKEILQVH--TRNMPLADDVNLDVIAEMTNGYTGA 389 Query: 198 -AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 A + + E ++ + ++ D L L+ EVLKE Sbjct: 390 DIAALAK--EAAMHALRRFINTGDRKKLLEQER----LSPEVLKEL 429 Score = 37.8 bits (87), Expect = 1.5, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 19/32 (59%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + V+L GP G+GK+ LA + +S + + Sbjct: 494 PPKGVLLFGPPGTGKTMLAKAVATESGANFIA 525 >gi|124804380|ref|XP_001347985.1| 26S protease subunit regulatory subunit 6a, putative [Plasmodium falciparum 3D7] gi|23496239|gb|AAN35898.1|AE014840_46 26S protease subunit regulatory subunit 6a, putative [Plasmodium falciparum 3D7] Length = 439 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 63/167 (37%), Gaps = 38/167 (22%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++ +T L + I ++ Sbjct: 219 PPKGVLMHGPPGTGKTLLARACASQTNATFLKLAGPQLVQMFIGDGAKMVRDAFNLAKEK 278 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151 ++++D + + ++N + D+ ++ A P + Sbjct: 279 APAIIFIDELDAIGTKRFDSELSGDREVQRTMLELLNQLDGFSTDDTVKVIAATNRPDTL 338 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L L S RL +++ P+++ +++ R++ + K + Sbjct: 339 DPAL--LRSGRLD--RKIELPHPNEESRARILQ--IHSRKMNVHKDV 379 >gi|18129333|emb|CAC83490.1| DnaA protein [Wolbachia endosymbiont of Brugia malayi] Length = 135 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 14/101 (13%), Positives = 40/101 (39%), Gaps = 1/101 (0%) Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 P + SRL V I+ + ++ +++ + + ++ + + Sbjct: 1 RSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQAKVEQMNMYVPQDVLEFLARNI 60 Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 ++ E ++K+ + +L G +T A+E L + + + Sbjct: 61 RSNIRELEGALNKVAHTSLI-GRSMTVESASETLMDLLRSN 100 >gi|253998904|ref|YP_003050967.1| recombination factor protein RarA [Methylovorus sp. SIP3-4] gi|253985583|gb|ACT50440.1| AAA ATPase central domain protein [Methylovorus sp. SIP3-4] Length = 440 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 28/186 (15%), Positives = 69/186 (37%), Gaps = 23/186 (12%) Query: 58 SWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS-------------NIAKSLDSIL 104 ++ S +IL GP G GK+ LA + ++ + + + ++ ++ Sbjct: 42 AFQSGKLPSMILWGPPGVGKTTLARLIANTADAEFIPLSAVLSGIKDIREAVERAQHTLQ 101 Query: 105 IDTRKPVL-LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 R+ +L ++++ + F + + A T S+ V L SR Sbjct: 102 QSGRRTILFVDEVHRFNKGQQDAFLPF---VESGLITFIGATTENPSFEVNSA-LLSR-- 155 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 A V + + L +++ + + + + ++ ++ + V+ + N Sbjct: 156 -ARVFVLQALSEADLAELLERARVNMSPEMALSDEVKEQVLAYADGDARRLLNFVEGLFN 214 Query: 222 LALSRG 227 AL+ G Sbjct: 215 AALTSG 220 >gi|158341181|ref|YP_001522456.1| transposase-associated ATP-binding protein, putative [Acaryochloris marina MBIC11017] gi|158311422|gb|ABW33033.1| transposase-associated ATP-binding protein, putative [Acaryochloris marina MBIC11017] Length = 272 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 49/146 (33%), Gaps = 36/146 (24%) Query: 30 FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLA----- 81 F F C + + + + P W +IL GPSG GK+ LA Sbjct: 86 FDFSHCPQL----------NPAPLMQLAADPGWLERAENCLIL-GPSGVGKTHLATGVSK 134 Query: 82 ---------NIWSDKSRSTRFSNIAKSLDSIL----IDTRKPVLLEDIDLLDFNDTQ--- 125 ++ + + L +D ++L+D+ ++ + Sbjct: 135 KMLEFGKRVKFFAANALVQQLQQAKLQLQLHPMLKKLDRYDLLILDDLGYCKKSEAETSV 194 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSW 151 LF +I + SLL+TA W Sbjct: 195 LFELI-AHRYERKSLLITANQPFSQW 219 >gi|329850245|ref|ZP_08265090.1| ATPase family associated with various cellular activities AAA family protein [Asticcacaulis biprosthecum C19] gi|328840560|gb|EGF90131.1| ATPase family associated with various cellular activities AAA family protein [Asticcacaulis biprosthecum C19] Length = 448 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 33/193 (17%), Positives = 64/193 (33%), Gaps = 34/193 (17%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD--FN 122 +IL GP G GK+ +A + ++ + F I+ + + E Sbjct: 62 PSLILWGPPGVGKTTIARLLAEAAG-YEFQQISAVFSGVADLKK---AFEQAQQRHQMGQ 117 Query: 123 DTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVV 168 T LF H N + L+ T L SR + V Sbjct: 118 RTVLFVDEIHRFNRAQQDSFLPFVEAGVVTLIGATTENPSFELNGA---LLSR---SQVF 171 Query: 169 KISLPDDDFLEKVIVKMFAD--RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 + DD L+++I K R++ ++ + + + L++ +D++ Sbjct: 172 VLKRLDDAALDQIIAKAEDHIGRKLPLEADAYETLKLLSDGDGRYILSLIEALDHMGFES 231 Query: 227 GMGITRSLAAEVL 239 L++E L Sbjct: 232 ------PLSSEAL 238 >gi|330446443|ref|ZP_08310095.1| recombination factor [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490634|dbj|GAA04592.1| recombination factor [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 446 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 47/199 (23%), Positives = 73/199 (36%), Gaps = 38/199 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G+GK+ LA + + + + R S + + I K + + T Sbjct: 52 MILWGPPGTGKTTLAEVAAHYANAEVERVSAVTSGIKDIRAAIGKA----RDNKMAGRRT 107 Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N Q D ++ T L SR A V K+ Sbjct: 108 ILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKL 161 Query: 171 SLPDDDFLEKVIVKMFAD--RQIF---------IDKKLAAYIVQRMERSLVFAEKLVDKM 219 +D + +V+ + D R + I +KLA ++ SL + E+L+D M Sbjct: 162 KSLEDSEILQVLEQALTDKERGVTETNLHFVDDIKEKLAEFVRGDARMSLNYLEQLID-M 220 Query: 220 DNLALSRGMGITRSLAAEV 238 IT L AEV Sbjct: 221 AEEDDKGVKQITVELLAEV 239 >gi|262363790|gb|ACY60511.1| chromosomal replication initiator protein [Yersinia pestis D106004] Length = 211 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 10/81 (12%) Query: 23 NKEEQ--LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGK 77 N Q L + + D+ + + + A P + L G +G GK Sbjct: 114 NSPAQPELSYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGK 173 Query: 78 SCLAN-----IWSDKSRSTRF 93 + L + I + K+ +T Sbjct: 174 THLLHAVGNGIMARKANATVV 194 >gi|118086471|ref|XP_001232269.1| PREDICTED: similar to Werner helicase interacting protein 1 isoform 1 [Gallus gallus] Length = 537 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 16/88 (18%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA+I ++ S+ + S S + + D+ N+ Sbjct: 158 PSLILWGPPGCGKTTLAHIIANSSKKKGMRFVTLSATSAKTND-----VRDVISQAQNEK 212 Query: 125 QLF-----------HIINSIHQYDSSLL 141 +LF H N Q +++LL Sbjct: 213 RLFKRKTILFIDEIHRFNKSQQVNAALL 240 >gi|323964459|gb|EGB59936.1| IstB ATP binding protein [Escherichia coli M863] Length = 233 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 30/145 (20%), Positives = 49/145 (33%), Gaps = 25/145 (17%) Query: 32 FPRCLGISRDDLL-VHSAIEQAVRLIDSWPSW--PSRVVILVGPSGSGKSCLANIWSDKS 88 P +S D V R + W V+L G SG GKS LA D Sbjct: 66 LPVAKTLSEYDFSQVPELNGAQFRQLCETTDWVDAGENVLLFGASGLGKSHLAAAIVDGV 125 Query: 89 RSTRFSNIAKSLDSILIDTRKP------------------VLLEDIDLLDFNDTQ---LF 127 + S +L + RK ++++D+ + + + LF Sbjct: 126 VGQGYRARFYSAGELLQELRKARAQLKLNELLLKLDRYRVIVVDDLGYVKRDSAETGVLF 185 Query: 128 HIINSIHQYDSSLLMTARTFPVSWG 152 +I + SL++T+ WG Sbjct: 186 ELI-AHRDERGSLVITSNHPFSMWG 209 >gi|295092387|emb|CBK78494.1| Recombination protein MgsA [Clostridium cf. saccharolyticum K10] Length = 462 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 67/184 (36%), Gaps = 29/184 (15%) Query: 54 RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS-----LDSILIDTR 108 LI+ +I GP G GK+ LA+I ++++ + + A + + ++ Sbjct: 43 NLIERDQ---VSSMIFWGPPGVGKTTLASIIANRTNAGFINFSAVTSGIKEIREVMAKAE 99 Query: 109 KP--------VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 + V +++I + F + S +L+ A T S+ + L S Sbjct: 100 EARHRGMKTVVFVDEIHRFNKAQQDAFLPY---VERGSIILIGATTENPSFEINSA-LLS 155 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMF-ADRQ-----IFIDKKLAAYIVQRMERSLVFAEK 214 R V + + L ++ + R + I+++L I + A Sbjct: 156 R---CRVFVLKELSREELTALLKHALTSSRGYGYLKVEIEEELLDMIARFAGGDARTALN 212 Query: 215 LVDK 218 +++ Sbjct: 213 VLEM 216 >gi|17865538|sp|O88685|PRS6A_MOUSE RecName: Full=26S protease regulatory subunit 6A; AltName: Full=26S proteasome AAA-ATPase subunit RPT5; AltName: Full=Proteasome 26S subunit ATPase 3; AltName: Full=Tat-binding protein 1; Short=TBP-1 gi|3510277|dbj|BAA32559.1| Tat binding protein-1 [Mus musculus] gi|10697242|dbj|BAB16347.1| proteasomal ATPase [Mus musculus] Length = 442 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 222 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 281 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + + ++N + Q ++ + ++ A Sbjct: 282 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 341 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ +P+++ +++ R++ + + + R Sbjct: 342 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 395 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ ++ G T Sbjct: 396 GAQSKAVCVEAGMIALRRGAT 416 >gi|145224348|ref|YP_001135026.1| recombination factor protein RarA [Mycobacterium gilvum PYR-GCK] gi|145216834|gb|ABP46238.1| Recombination protein MgsA [Mycobacterium gilvum PYR-GCK] Length = 446 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 65/175 (37%), Gaps = 30/175 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVL--------L 113 VIL GP G+GK+ LA++ S + + K + +++ R+ + + Sbjct: 63 VILYGPPGTGKTTLASMISQATGRRFEALSALAAGVKEVRAVIDVARQAAVRGEQTVLFI 122 Query: 114 EDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +++ L + + LL+ A T S+ V P L SR + ++++ Sbjct: 123 DEVHRFSKTQQDALL----AAVENRVVLLVAATTENPSFSVVAP-LLSR---SLILQLQP 174 Query: 173 PDDDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 + VI + D R + + +V S A + + ++ Sbjct: 175 LTPADVTTVIRRAITDERGLGGRVTVSDDAIEQLVL---LSAGDARRALTALEVA 226 >gi|62896529|dbj|BAD96205.1| proteasome 26S ATPase subunit 3 variant [Homo sapiens] Length = 424 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 73/201 (36%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 204 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 263 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + + ++N + Q ++ + ++ A Sbjct: 264 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 323 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ P+++ +++ R++ + + + R Sbjct: 324 DPAL--LRSGRLD--RKIEFPTPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 377 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ ++ G T Sbjct: 378 GAQCKAVCVEAGMIALRRGAT 398 >gi|84999438|ref|XP_954440.1| 226S proteasome regulatory particle [Theileria annulata] gi|65305438|emb|CAI73763.1| 226S proteasome regulatory particle, putative [Theileria annulata] Length = 419 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 30/202 (14%), Positives = 74/202 (36%), Gaps = 40/202 (19%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + +++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 199 PPKGILMHGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKMVRDAFNLAKEK 258 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151 +++ID + + ++N + D ++ A P + Sbjct: 259 APTIIFIDEIDAIGTKRFDSELSGDREVQRTMLELLNQLDGFSTDDKVKVIAATNRPYTL 318 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI-VQRMERSL 209 L L S RL +++ P+++ ++ R++ + K Y+ + R + Sbjct: 319 DPAL--LRSGRLD--RKIELPHPNEEARAHILQ--IHSRKMNVHKDT-NYMELSRSTENF 371 Query: 210 VFAEKLVDKMDNLALSRGMGIT 231 A+ ++ ++ G T Sbjct: 372 NGAQLKAVCIEAGMVALRRGAT 393 >gi|241761401|ref|ZP_04759489.1| AAA ATPase central domain protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374308|gb|EER63805.1| AAA ATPase central domain protein [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 449 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 38/255 (14%), Positives = 88/255 (34%), Gaps = 38/255 (14%) Query: 10 FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLL----VHSAIEQAVRLIDSWPSWPSR 65 + +K P+N+ + D++ V R++ + Sbjct: 11 LVFTENEKQPLPENRP----LADILRPK-HLSDVIGQAHVTGENGIIGRMV---AAGRLS 62 Query: 66 VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125 +IL GP G+GK+ +A + ++ RF ++ + + + E T Sbjct: 63 SLILWGPPGTGKTSIAQLLAESVG-IRFEMVSAIFSGVADLKKIFLKAEH-HRQQGRQTL 120 Query: 126 LF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKIS 171 LF H N + + +L+ T + L SR A VV ++ Sbjct: 121 LFIDEIHRFNKGQQDSFLPYIENGTFVLVGATTENPSFALNAA---LLSR---AQVVTLN 174 Query: 172 LPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229 D++ L ++ + + +D+ ++ + F + + LA++ Sbjct: 175 RLDEEALGLLLERAETVSGQLLPVDEDARKALIASADGDGRFLLNQAEIL--LAMNLTKS 232 Query: 230 ITRSLAAEVLKETQQ 244 ++ A++L++ Sbjct: 233 LSVPELAQILQKRMA 247 >gi|23015800|ref|ZP_00055567.1| COG2256: ATPase related to the helicase subunit of the Holliday junction resolvase [Magnetospirillum magnetotacticum MS-1] Length = 430 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 51/144 (35%), Gaps = 26/144 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID--LLDFNDT 124 VIL GP G GK+ +A + ++K F ++ + + + + + T Sbjct: 51 VILWGPPGCGKTTIARLLAEKVG-LYFEPLSAVFSGVADLRK---VFDAAEKRKQTGRST 106 Query: 125 QLF----HIINSIHQYD-------SSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N Q ++++ T L SR V+ + Sbjct: 107 LLFVDEIHRFNRAQQDGFLPYVENGTVVLVGATTENPSFELNGA---LLSR---CQVLVL 160 Query: 171 SLPDDDFLEKVIVKMFADRQIFID 194 DD LE ++VK AD + Sbjct: 161 HRLDDGALEDLLVKAEADLGRALP 184 >gi|289550607|ref|YP_003471511.1| ATPase of helicase subunit of the Holliday junction resolvase [Staphylococcus lugdunensis HKU09-01] gi|289180139|gb|ADC87384.1| ATPase of helicase subunit of the Holliday junction resolvase [Staphylococcus lugdunensis HKU09-01] Length = 422 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 33/200 (16%), Positives = 75/200 (37%), Gaps = 39/200 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117 +I GP G GK+ +A S + + ++ ++ + + +LL++I Sbjct: 43 MIFYGPPGIGKTSIAKAISGSTAYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIH 102 Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 L D L H+ N +L+ T + P + SR A + ++ Sbjct: 103 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 151 Query: 174 DDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 +++ ++ +++ D R + ID+ Y + S ++ ++ LS Sbjct: 152 NEEDIKVALMRAIEDDSRGLASYHPHIDEDAIEYFSTQ---SQGDVRSALNALELAVLSA 208 Query: 227 -----GMGITRSLAAEVLKE 241 +T + A + L++ Sbjct: 209 DEDNGERHVTLTDAQDCLQK 228 >gi|284161883|ref|YP_003400506.1| ATPase AAA [Archaeoglobus profundus DSM 5631] gi|284011880|gb|ADB57833.1| AAA ATPase central domain protein [Archaeoglobus profundus DSM 5631] Length = 499 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 74/229 (32%), Gaps = 45/229 (19%) Query: 49 IEQAVRLIDSWPSW-PSRVVILVGPSGSGKSCLA----------------------NIWS 85 +E+ + W P + ++L GP G GK+ LA I Sbjct: 22 LERVIAWAKRWQEGIPQKPLLLGGPPGVGKTSLALALANTFGWEVVELNASDQRSWQIIR 81 Query: 86 DKSRSTRFSNIAKSLDSILIDTRK---PVLLEDIDLLD-----FNDTQLFHIINSIHQYD 137 FS S L +LL+++D + ++ L + + Sbjct: 82 RIVGEAAFSETISSEGEFLSSESGRLKLILLDEVDNISKKEDFGGESALIKL--LKRKPR 139 Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 +++TA P L DL V+ D + KV+ ++ A I D+ Sbjct: 140 QPIILTA-NDPYKLSKELRDL------CEFVQFKRLRTDQIVKVLERICASEGIKADRNA 192 Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 I Q L A D A++ G R+ V K Q+ D Sbjct: 193 LRLIAQNAGGDLRAAIN-----DLQAIAEGRREIRAEDVVVSKRMQETD 236 >gi|116629635|ref|YP_814807.1| recombination factor protein RarA [Lactobacillus gasseri ATCC 33323] gi|116095217|gb|ABJ60369.1| Helicase subunit of the Holliday junction resolvase related ATPase [Lactobacillus gasseri ATCC 33323] Length = 429 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 64/168 (38%), Gaps = 26/168 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK---------PVLLEDID 117 ++L GP G+GK+ LA I + + + S+D+ T+ +L+++I Sbjct: 47 LLLWGPPGTGKTSLAQIIAREFD-YPLATFNASIDNKAKLTQIINTYPYQSFVLLIDEIH 105 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 + + LL+ A T + P + SR + + D+ Sbjct: 106 RMTTTLQDFLLPY---LENGRILLIGATTENPIMSIV-PAVRSR---CQIFEFKALSDED 158 Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD-NLAL 224 +E+V+++ ++ + + ++R V + D +AL Sbjct: 159 IEQVLIRALK--------EVFHFKDENIDRKAVKIIAISADGDLRVAL 198 >gi|320100774|ref|YP_004176366.1| replication factor C large subunit [Desulfurococcus mucosus DSM 2162] gi|319753126|gb|ADV64884.1| replication factor C large subunit [Desulfurococcus mucosus DSM 2162] Length = 425 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 44/210 (20%), Positives = 79/210 (37%), Gaps = 39/210 (18%) Query: 53 VRLIDSWPSW-PSRVV-ILVGPSGSGKSCLANIWSDKSRSTRFSNIA------------- 97 + ++SW P + +L GP G GK+ L + F A Sbjct: 31 IAWLESWEKGVPGKKAALLHGPPGCGKTSLVEAVARSKGYQLFEMNASDARRKEDIDRIV 90 Query: 98 --KSLDSILIDTRKPVLLEDIDLLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 S L +RK +LL+++D +D + + ++ I + ++MTA Sbjct: 91 KLASRSGALTGSRKIILLDEVDGMDPRADAGGIEALVEVIKATANPIIMTANNPYSQALR 150 Query: 154 CLPDLCS-----RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 L +L RL + VVK V+ K+ ++F + + I +R E Sbjct: 151 PLRELSEVIGFKRLSESVVVK-----------VLKKICGAEKLFCEDEALREIARRSEGD 199 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEV 238 L A ++ + LS G +T + E+ Sbjct: 200 LRSAINDLEAL--AGLSGG--VTVNAVKEL 225 >gi|254579010|ref|XP_002495491.1| ZYRO0B12606p [Zygosaccharomyces rouxii] gi|238938381|emb|CAR26558.1| ZYRO0B12606p [Zygosaccharomyces rouxii] Length = 777 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 25/155 (16%), Positives = 58/155 (37%), Gaps = 32/155 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110 P R ++L GP G+GK+ L ++ + + + S+ S + + Sbjct: 272 PPRGILLHGPPGTGKTMLLRCVANTTDAHILTINGPSIVSKYLGETEATLREIFDEAKLY 331 Query: 111 ----VLLEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 + +++ID + N L +++ + +++ A P + Sbjct: 332 QPSIIFIDEIDSIAPNRASDDSGEVESRVVATLLTLMDGMGAAGRLVVVAATNRPNNID- 390 Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 P L + V+I++PD + +++K F Sbjct: 391 --PALRRPGRFDQEVEIAIPDVEERIDILMKQFER 423 >gi|198282689|ref|YP_002219010.1| AAA ATPase central domain-containing protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667409|ref|YP_002424881.1| ATPase, AAA family [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247210|gb|ACH82803.1| AAA ATPase central domain protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519622|gb|ACK80208.1| ATPase, AAA family [Acidithiobacillus ferrooxidans ATCC 23270] Length = 442 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 61/177 (34%), Gaps = 32/177 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP GSGK+ LA + + + S + + I + T Sbjct: 48 MILWGPPGSGKTTLAQLLAHTAGRHFQILSAVNSGVREIRAAVSSA----EAAQSLGQGT 103 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + L+ A T S+ + L SR A V + Sbjct: 104 VLFIDEIHRFNKSQQDALLPYVEEGVVTLIGATTENPSFALVNA-LLSR---ARVYVLKA 159 Query: 173 PDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 ++ L V+ ADR I + ++ ++ + A +L++ +D Sbjct: 160 LTEEELGAVLDHTLADRVLGLGALAIEMSPEVRKGLLTAAD---GDARRLLNLLDLA 213 >gi|66358362|ref|XP_626359.1| 26S proteasome regulatory subunit, S6a like AAA ATpase [Cryptosporidium parvum Iowa II] gi|46227999|gb|EAK88919.1| 26S proteasome regulatory subunit, S6a like AAA ATpase [Cryptosporidium parvum Iowa II] Length = 461 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 67/181 (37%), Gaps = 40/181 (22%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 240 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKMVRDAFEIAREK 299 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151 ++++D + + ++N + D ++ A P + Sbjct: 300 APSIIFIDELDAIGMKRFDSEHSGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRPDTL 359 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL V++ P+++ +++ R++ +D + Q + RS Sbjct: 360 DPAL--LRSGRLD--RKVELPHPNEEARSRILQ--IHSRKMNVDLNDVNF--QELSRSTD 411 Query: 211 F 211 Sbjct: 412 D 412 >gi|320161389|ref|YP_004174613.1| Holliday junction ATP-dependent DNA helicase RuvB [Anaerolinea thermophila UNI-1] gi|319995242|dbj|BAJ64013.1| Holliday junction ATP-dependent DNA helicase RuvB [Anaerolinea thermophila UNI-1] Length = 344 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 82/201 (40%), Gaps = 25/201 (12%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSR------STRFSNIAKSLDSIL--IDTRKPVLLE 114 P V+ GP G GK+ LA++ +++ + A L +IL + + ++ Sbjct: 54 PLEHVLFYGPPGLGKTTLAHVLANEMGVNIKITAGPAIEKAGDLAAILTNLKGGDILFID 113 Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-----------LCS--- 160 +I L ++ + ++ + +++ S + LP L S Sbjct: 114 EIHRLGKAIEEV--LYPAMEDFALDIMIGKGPAARSIRLKLPRFTVIGATTRLALISAPL 171 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM- 219 R + V ++ D + +E ++ + + Q+ ++ + I R + A +L+ ++ Sbjct: 172 RARFGAVYRLDYYDVNAIEAILKRAASRLQMTVEPEGFREIAHRARGTPRVALRLLRRVR 231 Query: 220 DNLALSRGMGITRSLAAEVLK 240 D + +T+++AAE L Sbjct: 232 DFAQVRHQGLVTQAVAAEALN 252 >gi|149244336|ref|XP_001526711.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL YB-4239] gi|146449105|gb|EDK43361.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL YB-4239] Length = 839 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 42/270 (15%), Positives = 78/270 (28%), Gaps = 56/270 (20%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLL-----VHSAIEQAVRLIDSWPSWPSRVVI 68 DKQK + + + DD + V LI + + Sbjct: 167 DKQKEMAELKRRAAAPLAHRVRPK-TLDDFIGQEKLVGE-NAPLRNLIQAD---LIPSFL 221 Query: 69 LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLF- 127 L GP G GK+ +A I + + ++ + +++ L T LF Sbjct: 222 LWGPPGCGKTTIARIIAKSTDYRYVELSGADSNAKSLKDAFAQA-DNLKKLTGQRTILFL 280 Query: 128 ---HIINSIHQYDSSLLM-------------TARTFPVSWGVCLPDLCSR--------LK 163 H N Q LL+ T + L SR L Sbjct: 281 DEIHRYNKAVQD---LLLPVIERGTCTVIGATTENPSFNLNNA---LLSRLHTFVMEPLT 334 Query: 164 AATVVKISLPDDDFLEKV-----IVK-MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 VV+I + + K +F + ++ YI + A +++ Sbjct: 335 TTAVVRI------LHRALYDINQLRKNLFQLHYMTLENGAFTYIAELCMGDSRVALNILE 388 Query: 218 KMDNL--ALSRGMGITRSLAAEVLKETQQC 245 ++ + + +A E + +Q Sbjct: 389 TVNAYLSSAKFKTELQTKVAQETKPQEEQA 418 >gi|283851952|ref|ZP_06369228.1| AAA ATPase central domain protein [Desulfovibrio sp. FW1012B] gi|283572676|gb|EFC20660.1| AAA ATPase central domain protein [Desulfovibrio sp. FW1012B] Length = 408 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 60/162 (37%), Gaps = 14/162 (8%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI--LIDTRKPVLLEDIDLLD 120 ++L GP G GKS LA I + R S L ++ LI ++ ++L+++ Sbjct: 43 PSLLLFGPPGCGKSTLALILARAKGRPYVRVSAPEAGLATLRELIKGKEILILDELHRFS 102 Query: 121 FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 F + + +L+ T S+ V L SRL V+++ L Sbjct: 103 KAQQDFFLP---LLETGEMVLLATTTENPSFSVTRQ-LLSRL---HVLRLRPLSHGELML 155 Query: 181 VIVKMFADRQIFI---DKKLAAYIVQRMERSLVFAEKLVDKM 219 + + + + A + R+L+ + V + Sbjct: 156 LAERGAKAAGLDLARESLDAIALLSSGDGRTLLNLVEFVAAL 197 >gi|242078039|ref|XP_002443788.1| hypothetical protein SORBIDRAFT_07g002080 [Sorghum bicolor] gi|241940138|gb|EES13283.1| hypothetical protein SORBIDRAFT_07g002080 [Sorghum bicolor] Length = 802 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 26/220 (11%), Positives = 71/220 (32%), Gaps = 53/220 (24%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRST-------------------------------- 91 + + + GP G GK+ +A ++ Sbjct: 191 APIYLFHGPHGVGKTSMARTFAAALNCRSPGGNQPCGRCDECVAIFSGSSSSVVEIDASK 250 Query: 92 -----RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIH---QYDSSLLMT 143 R + + ++ + + V++ D D + + I NS+ + +++T Sbjct: 251 LDCKSRVAALLRNACEVPASSHFKVMIVD-DCQHMDKEGWYSIYNSLEGIPESTIFVMIT 309 Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203 + LP + + + DD + + ++K+ + + + + + Sbjct: 310 SDID------KLP--SNSIGWCQSYRFCKIDDAEIARRLIKICTKEGMEFEAEALDLLAR 361 Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 + + +D L L G I++S+ E++ + Sbjct: 362 KAN---GSIRDAIQMLDQLTL-LGKRISKSVTHELIGDVS 397 >gi|196010085|ref|XP_002114907.1| conserved hypothetical protein [Trichoplax adhaerens] gi|190582290|gb|EDV22363.1| conserved hypothetical protein [Trichoplax adhaerens] Length = 872 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 48/121 (39%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 239 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 298 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + ++++D + QL +++ + Q ++M A P S Sbjct: 299 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRSHVVVMAATNRPNSIDGA 358 Query: 155 L 155 L Sbjct: 359 L 359 Score = 37.8 bits (87), Expect = 1.4, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 25/59 (42%) Query: 61 SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 W + V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 525 CWKTLGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKA 583 >gi|57640604|ref|YP_183082.1| cell division protein CDC48 [Thermococcus kodakarensis KOD1] gi|6513847|dbj|BAA87866.1| Pk-cdcA [Thermococcus kodakaraensis] gi|57158928|dbj|BAD84858.1| CDC48/VCP homolog, AAA superfamily [Thermococcus kodakarensis KOD1] Length = 835 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 23/162 (14%), Positives = 61/162 (37%), Gaps = 33/162 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109 P + V+L GP G+GK+ LA ++++ + + + L I + + Sbjct: 242 PPKGVLLYGPPGTGKTLLAKAVANEANAHFIAINGPEIMSKFYGESEERLREIFKEAEEN 301 Query: 110 ---PVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + +++ A P + Sbjct: 302 APSIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALD-- 359 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196 P L + +++ +PD ++++ R + ++ Sbjct: 360 -PALRRPGRFDREIEVGVPDKQGRKEILQ--IHTRGMPLEPD 398 Score = 42.4 bits (99), Expect = 0.058, Method: Composition-based stats. Identities = 38/208 (18%), Positives = 75/208 (36%), Gaps = 46/208 (22%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRKP 110 P + ++L GP G+GK+ LA +++S++ + K + I R+ Sbjct: 577 PPKGILLYGPPGTGKTLLAKAVANESQANFIAIRGPEVLSKWVGETEKRIREIFRKARQA 636 Query: 111 ----VLLEDIDLLD---FND---------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 V +++ID + ++ QL ++ I + +++ A P Sbjct: 637 APTVVFIDEIDAIAPARGSEGDRVTDRLINQLLTEMDGIQENSGVVVIGATNRPDIIDPA 696 Query: 155 LPDLC----SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRME-RS 208 L L RL + + PD+ + I K+ R + + + + ++ E + Sbjct: 697 L--LRPGRFDRL-----ILVPAPDEKARLE-IFKVHTRR-VPLAGDVDLRELAKKTEGYT 747 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAA 236 LV AL I R L Sbjct: 748 GADIAALVR---EAALIAMRRIMRELPR 772 >gi|120554251|ref|YP_958602.1| IstB ATP binding domain-containing protein [Marinobacter aquaeolei VT8] gi|120324100|gb|ABM18415.1| IstB domain protein ATP-binding protein [Marinobacter aquaeolei VT8] Length = 166 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 48/125 (38%), Gaps = 24/125 (19%) Query: 56 IDSWPSWPSRV--VILVGPSGSGKSCLANIWSDK-----SRSTRFSNIAKS--------- 99 + W V+L+GPSG+GK+ +AN + R F IA Sbjct: 4 LQQDSDWVHHADNVLLIGPSGTGKTHIANALGHQLTEQGVRCKLFPAIALVQHLQQAKRD 63 Query: 100 ----LDSILIDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWG 152 +D + ++++DI + D + LF I ++ SL++TA W Sbjct: 64 LDLMTAMTRLDKYRVIIIDDIGYVKKTDAETQVLFEFIAHRYESG-SLIVTANQPFSEWD 122 Query: 153 VCLPD 157 PD Sbjct: 123 QIFPD 127 >gi|227515139|ref|ZP_03945188.1| recombination ATPase [Lactobacillus fermentum ATCC 14931] gi|227086471|gb|EEI21783.1| recombination ATPase [Lactobacillus fermentum ATCC 14931] Length = 448 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 60/185 (32%), Gaps = 33/185 (17%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRF-------------SNIAKSLDSILIDTRKPV 111 +IL GP G GK+ LA I + K+++ + + + R V Sbjct: 53 PSLILWGPPGVGKTTLAEIIAQKTKAKFITFSAVNSSIKDIKQVMEAATANHQFGERTVV 112 Query: 112 LLEDIDLLDFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVK 169 +++I + F + +L+ T L SR V Sbjct: 113 FIDEIHRFNKAQQDAFLPY---VERGEIILIGATTENPSFELNAA---LLSR---CKVFV 163 Query: 170 ISLPDDDFLEKVIVKM------FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + D L K++ + FAD +I ++ + I A ++ ++ Sbjct: 164 LRALDKGALVKILHRALHHPNGFADLEITVEDGVLEAIANFAN---GDARMALNTLEMAV 220 Query: 224 LSRGM 228 L+ Sbjct: 221 LNGQR 225 >gi|289432427|ref|YP_003462300.1| IstB domain protein ATP-binding protein [Dehalococcoides sp. GT] gi|288946147|gb|ADC73844.1| IstB domain protein ATP-binding protein [Dehalococcoides sp. GT] Length = 469 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 57/156 (36%), Gaps = 35/156 (22%) Query: 50 EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID--- 106 E A+ + W ++ GPSG+GK+ LA +++ ST + K ++ D Sbjct: 114 EAALDFASNPTGW----LVFTGPSGAGKTHLAAAIANRRLSTGQPVLYKRASELIDDLKK 169 Query: 107 ------------------TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTAR 145 ++++D+ + ++ +L ++ + ++T Sbjct: 170 SFEPDSDAGYSQSFDILKNAPLLVIDDLTVQSGSEWSKEKLDQLLTYRFSQELPTIITLS 229 Query: 146 TFPVSWGVCLPDLCSRLKAATVVKI----SLPDDDF 177 T P + SRL ++ KI P+D Sbjct: 230 TPINELD---PRIQSRLLDKSISKIYTVAPNPEDSL 262 Score = 42.4 bits (99), Expect = 0.058, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 53/151 (35%), Gaps = 30/151 (19%) Query: 51 QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI-------------------WSDKSRST 91 A L + P ++ G +G GK+ LA+ + D RST Sbjct: 298 AAYNLALDFSRNPESWLVFQGETGCGKTHLASAIVNERYRQGKPAMFVVVPEFLDHLRST 357 Query: 92 RFSNIAKSLDSILIDTRKP--VLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTART 146 S D + + ++L+D + +L+ +IN + + ++T R Sbjct: 358 FSPESKTSYDQMFDAVKNAKLLVLDDFGEQSSTPWAQEKLYQVINYRYNRRLATVITTRC 417 Query: 147 FPVSWGVCLPDLCSRL---KAATVVKISLPD 174 V + SR + + V I+ P+ Sbjct: 418 QLSEIEVAI---SSRFVDPQISMVFNITAPN 445 >gi|255070161|ref|XP_002507162.1| cell division cycle protein 48-like protein, expessed [Micromonas sp. RCC299] gi|226522437|gb|ACO68420.1| cell division cycle protein 48-like protein, expessed [Micromonas sp. RCC299] Length = 821 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 66/164 (40%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP GSGK+ +A ++++ + F SN+ K+ + + Sbjct: 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 300 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + ++M A P S Sbjct: 301 APAIIFIDEIDSIAPKREKTQGEVERRIVSQLLTLMDGMKSRAHIIVMGATNRPNS---V 357 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PD+ +V+ + + +D+++ Sbjct: 358 DPALR-RFGRFDREIDIGVPDETGRLEVL--RIHTKNMKLDEEV 398 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 514 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 570 >gi|187736721|ref|YP_001840978.1| hypothetical protein pEspB_p24 [Exiguobacterium arabatum] gi|183223754|emb|CAQ35239.1| hypothetical protein [Exiguobacterium arabatum] Length = 233 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 24/125 (19%) Query: 64 SRVVILVGPSGSGKSCLA----NIWSDKSRSTRFSNIAKSLDSILIDTRKPVL------L 113 S+ V+L G G+GK+ LA K RF +++ ++ + R L L Sbjct: 86 SQNVVLTGSPGTGKTHLAIGLGREACHKGYEVRFFRVSELVEQLNKAWRDGKLSSFHSRL 145 Query: 114 EDIDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 E DL+ ++ LFH+I ++ SL++T+ W D +RL Sbjct: 146 ESADLIILDEMGYIPLTKESAELLFHLITDWYER-KSLIITSNLEFSQWNRIFGD--ARL 202 Query: 163 KAATV 167 AA V Sbjct: 203 TAALV 207 >gi|238854285|ref|ZP_04644629.1| recombination factor protein RarA [Lactobacillus gasseri 202-4] gi|282851165|ref|ZP_06260532.1| ATPase, AAA family [Lactobacillus gasseri 224-1] gi|238833096|gb|EEQ25389.1| recombination factor protein RarA [Lactobacillus gasseri 202-4] gi|282557697|gb|EFB63292.1| ATPase, AAA family [Lactobacillus gasseri 224-1] Length = 426 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 64/168 (38%), Gaps = 26/168 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK---------PVLLEDID 117 ++L GP G+GK+ LA I + + + S+D+ T+ +L+++I Sbjct: 44 LLLWGPPGTGKTSLAQIIAREFD-YPLATFNASIDNKAKLTQIINTYPYQSFVLLIDEIH 102 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 + + LL+ A T + P + SR + + D+ Sbjct: 103 RMTTTLQDFLLPY---LENGRILLIGATTENPIMSIV-PAVRSR---CQIFEFKALSDED 155 Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD-NLAL 224 +E+V+++ ++ + + ++R V + D +AL Sbjct: 156 IEQVLIRALK--------EVFHFKDENIDRKAVKIIAISADGDLRVAL 195 >gi|89073399|ref|ZP_01159923.1| putative ATPase protein [Photobacterium sp. SKA34] gi|89050886|gb|EAR56360.1| putative ATPase protein [Photobacterium sp. SKA34] Length = 428 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 81/198 (40%), Gaps = 36/198 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST-------------RFSNIAKSLDSILIDTRKPVLL 113 +IL GP G+GK+ LA + + + + + I K+ D+ + R + + Sbjct: 34 MILWGPPGTGKTTLAEVAAHYANAEVERVSAVTSGIKDIRAAIDKARDNKMAGRRTILFV 93 Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++ + + F HI + + + A T S+ + L SR + V K+ Sbjct: 94 DEVHRFNKSQQDAFLPHI-----EDGTVTFIGATTENPSFELNNA-LLSR---SRVYKLK 144 Query: 172 LPDDDFLEKVIVKMFAD--RQIF---------IDKKLAAYIVQRMERSLVFAEKLVDKMD 220 +DD + +VI + D R + I KLA ++ SL + E+L+D M Sbjct: 145 SLEDDEILQVIEQALMDKERGVTETNLHFADDIKDKLAEFVRGDARMSLNYLEQLID-MS 203 Query: 221 NLALSRGMGITRSLAAEV 238 IT L AEV Sbjct: 204 EEDEKGIKQITVELLAEV 221 >gi|319955815|ref|YP_004167078.1| recombination protein mgsa [Nitratifractor salsuginis DSM 16511] gi|319418219|gb|ADV45329.1| Recombination protein MgsA [Nitratifractor salsuginis DSM 16511] Length = 396 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 25/178 (14%), Positives = 61/178 (34%), Gaps = 26/178 (14%) Query: 60 PSWPSRVVI---------LVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDS------ 102 P P R ++ GP G GK+ L I + K F+ +D Sbjct: 25 PEAPFRKLVEKDALPHSLFFGPPGCGKTTLTRILAKKLDRPFHEFNATTLKIDELRQLFK 84 Query: 103 --ILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 + V ++++ L ++ + +L++ A T + + + S Sbjct: 85 KYANALQKPLVFIDEVHRLSKTQQEVLLPY---MEEQRALIVGASTQNPYYALTAA-IRS 140 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218 R + + ++ D+ + ++ ++ I + + Y++ L L++ Sbjct: 141 R---SHLFELKSLDESAMRTMLRRVLEREDIEVTPEAETYLIHSSSGDLRAMLGLLES 195 >gi|150007159|ref|YP_001301902.1| recombination factor protein RarA [Parabacteroides distasonis ATCC 8503] gi|149935583|gb|ABR42280.1| putative AAA family ATPase protein [Parabacteroides distasonis ATCC 8503] Length = 422 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 55/138 (39%), Gaps = 21/138 (15%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDT---------RKP 110 IL GP G GK+ LA I ++K + + S+ K + ++ Sbjct: 40 PSFILWGPPGVGKTTLAQIIANKLDAPFYTLSAISSGVKDVREVIEKAKSNRFFNTVSPI 99 Query: 111 VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 + +++I + ++N++ + L+ A T S+ V P L SR V + Sbjct: 100 LFIDEIHRFSKSQQD--SLLNAV-ETGVVTLIGATTENPSFEVIRP-LLSR---CQVYVL 152 Query: 171 SLPDDDFLEKVIVKMFAD 188 D + L ++ K A+ Sbjct: 153 KSLDKNDLLTLLYKAIAE 170 >gi|254423935|ref|ZP_05037653.1| ATPase, AAA family protein [Synechococcus sp. PCC 7335] gi|196191424|gb|EDX86388.1| ATPase, AAA family protein [Synechococcus sp. PCC 7335] Length = 742 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 38/200 (19%), Positives = 70/200 (35%), Gaps = 37/200 (18%) Query: 42 DLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLD 101 D +V R I++ +I GP G+GK+ LA + ++ + + + A Sbjct: 34 DAIVGPG-RLLRRAIEADQ---LSSLIFYGPPGTGKTTLAKVIANTTMAQFVAINAVLGG 89 Query: 102 SILIDTRKPVLLEDIDLLDFN---DTQLF----HIINSIH--------QYDSSLLMTART 146 I +E T LF H N + + +L+ A T Sbjct: 90 VKDIR----FAIEQAQTHRGQFGRRTILFVDEVHRFNKAQQDALLPWVENGTVILIGATT 145 Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAA 199 + V L SR + V ++ + D LE ++ + +D R I ID Sbjct: 146 ENPFFEVNKA-LVSR---SRVFQLKPLNADDLEAIVQQALSDSERGYGKQDILIDTDALN 201 Query: 200 YIVQRMERSLVFAEKLVDKM 219 ++V A +++ + Sbjct: 202 HLVNVAN---GDARTVLNAL 218 >gi|4960192|gb|AAD34634.1|AF153678_3 unknown [Myxococcus xanthus] Length = 530 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 11/113 (9%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTR 92 P + LV + QA L+ +R ++++GP GSGKS +W + + Sbjct: 302 PVTPALG----LVGQGVTQA--LLTQSLEAHARTLLVIGPEGSGKS----VWFQQLQREA 351 Query: 93 FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTAR 145 I D L + + +L+ED+D LD +L++AR Sbjct: 352 VGVITPVADLDLTASSRTLLVEDVDRLDATSHAALQAF-LARDSRPVVLLSAR 403 >gi|18977335|ref|NP_578692.1| cell division protein CDC48 [Pyrococcus furiosus DSM 3638] gi|18893012|gb|AAL81087.1| cell division control protein 48, aaa family [Pyrococcus furiosus DSM 3638] Length = 837 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 24/162 (14%), Positives = 61/162 (37%), Gaps = 33/162 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109 P + V+L GP G+GK+ LA ++++ + + + L I + + Sbjct: 242 PPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEEN 301 Query: 110 ---PVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + +++ A P + Sbjct: 302 APAIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDAID-- 359 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196 P L + +++ +PD ++++ R + I+ Sbjct: 360 -PALRRPGRFDREIEVGVPDKQGRKEILQ--IHTRGMPIEPD 398 Score = 44.4 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 32/202 (15%), Positives = 69/202 (34%), Gaps = 45/202 (22%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRKP 110 P + ++L GP G+GK+ LA + +S++ + K + I R+ Sbjct: 577 PPKGILLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQA 636 Query: 111 ----VLLEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 + +++ID + QL ++ I + +++ A P Sbjct: 637 APAIIFIDEIDAIAPARGGYEGERVTDRLINQLLTEMDGIQENSGVVVIGATNRPDIIDP 696 Query: 154 CLPDLC----SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERS 208 L L RL + + PD+ ++ + R + + + + +R E Sbjct: 697 AL--LRPGRFDRL-----ILVPAPDE--KARLEIFKVHTRGMPLADDVDLKELARRTEGY 747 Query: 209 LVFAEKLVDKMDNLALSRGMGI 230 V + AL+ + Sbjct: 748 TGADIAAVCR--EAALNALRRV 767 >gi|301112162|ref|XP_002905160.1| ATPase WRNIP1 [Phytophthora infestans T30-4] gi|262095490|gb|EEY53542.1| ATPase WRNIP1 [Phytophthora infestans T30-4] Length = 499 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 62/176 (35%), Gaps = 34/176 (19%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA++ S K+ S + + + + +D + Sbjct: 121 PNMILWGPPGCGKTTLAHVISKKTGCKFISLSGATSKAGDMK-------DAVDRARG-ER 172 Query: 125 QLF-----------HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 ++F H N I + + L+ A T S+ V L SR Sbjct: 173 KMFRRRTIVFVDEIHRFNKIQQDFFLPPVEDGTITLIGATTENPSFEVNNA-LLSR---C 228 Query: 166 TVVKISLPDDDFLEKVIVKMF-ADRQIFI--DKKLAAYIVQRMERSLVFAEKLVDK 218 V + + +E+++ + A Q+ + + Y+ + A ++ Sbjct: 229 RVYSLKKHTPESIERILRRALTAGDQMSFEAEDEAIKYLTTQCAGDARAALNCLEM 284 >gi|239637567|ref|ZP_04678539.1| recombination factor protein RarA [Staphylococcus warneri L37603] gi|239596785|gb|EEQ79310.1| recombination factor protein RarA [Staphylococcus warneri L37603] Length = 423 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 34/200 (17%), Positives = 71/200 (35%), Gaps = 39/200 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117 +I GP G GK+ +A + ++ + ++ +D + + +LL++I Sbjct: 43 MIFYGPPGIGKTSIAKAIAGSTQYKFRQLNAVTNTKKDMQMVVDEAKMSGQVILLLDEIH 102 Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 L D L H+ N +L+ T + P + SR A + ++ Sbjct: 103 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 151 Query: 174 DDDFLEKVIVKMFAD--RQIF-----IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 D+ + + + D R + +D Y + S ++ ++ LS Sbjct: 152 YDNDIRLALNRALEDDQRGLKSYTPEVDDDAMTYFSTQ---SQGDVRSALNALELAVLSA 208 Query: 227 -----GMGITRSLAAEVLKE 241 IT A + L++ Sbjct: 209 TEEDGQRHITLQDAKDCLQK 228 >gi|83815055|ref|YP_444609.1| putative ATPase [Salinibacter ruber DSM 13855] gi|83756449|gb|ABC44562.1| putative ATPase [Salinibacter ruber DSM 13855] Length = 341 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 49/143 (34%), Gaps = 31/143 (21%) Query: 46 HSAIEQAVRL---IDSWPSWPSRV--------------VILVGPSGSGKSCLANIWSDKS 88 A+ A + PSW R+ + LVGP+G+GK+ L + Sbjct: 25 AEALRVARAFVAELRRTPSWAERLRALLGVGDERLPQGLYLVGPTGTGKTHLLAATCNAL 84 Query: 89 RSTRFSNI------------AKSLDSILIDTRKPVLLEDIDLLD-FNDTQLFHIINSIHQ 135 R + L D L+++++ D N+ +L ++ ++ Sbjct: 85 MPERACAFLHSSTLFRQTEPPDAFAHRLADQYAACCLDEVEIDDPANEMRLAGVMKTLAA 144 Query: 136 YDSSLLMTARTFPVS-WGVCLPD 157 D LL T+ P L D Sbjct: 145 RDVPLLATSNVAPEEYLATQLGD 167 >gi|67623645|ref|XP_668105.1| 26S protease subunit regulatory subunit 6a [Cryptosporidium hominis TU502] gi|54659292|gb|EAL37876.1| 26S protease subunit regulatory subunit 6a [Cryptosporidium hominis] Length = 425 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 67/181 (37%), Gaps = 40/181 (22%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 204 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKMVRDAFEIAREK 263 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151 ++++D + + ++N + D ++ A P + Sbjct: 264 APSIIFIDELDAIGMKRFDSEHSGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRPDTL 323 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL V++ P+++ +++ R++ +D + Q + RS Sbjct: 324 DPAL--LRSGRLD--RKVELPHPNEEARSRILQ--IHSRKMNVDLNDVNF--QELSRSTD 375 Query: 211 F 211 Sbjct: 376 D 376 >gi|229495215|ref|ZP_04388950.1| ATPase, AAA family [Porphyromonas endodontalis ATCC 35406] gi|229317658|gb|EEN83556.1| ATPase, AAA family [Porphyromonas endodontalis ATCC 35406] Length = 458 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 54/158 (34%), Gaps = 35/158 (22%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS----------------TRFSNIAKSLDSILIDTR 108 +IL GP G GK+ LA + + + +S Sbjct: 64 PSLILWGPPGVGKTTLAELIAQSVEAPFYKLSAVGSGVGDVRRVLEEAERSTQGFFAAKS 123 Query: 109 KPVL-LEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 +P+L +++I + L + + L+ A T S+ V P L SR Sbjct: 124 RPLLFIDEIHRFSKSQQDSLL----AAVERGIVTLIGATTENPSFEVIRP-LLSR---CQ 175 Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 V + + + L +++ + I + Y+V R Sbjct: 176 VFVLQSLEPEDLRQLLER-------AISTDI--YLVPR 204 >gi|218533465|ref|YP_002424280.1| transposase [Methylobacterium chloromethanicum CM4] gi|218525768|gb|ACK86352.1| IstB domain protein ATP-binding protein [Methylobacterium chloromethanicum CM4] Length = 274 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 56/149 (37%), Gaps = 30/149 (20%) Query: 30 FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW----- 84 F F + A AV D+W + ++L GP G GKS LA Sbjct: 84 FDFAAVPML-------SKAQVMAVSAGDAWLT-QGANLLLFGPPGGGKSHLAAAIGLALV 135 Query: 85 -----------SDKSRSTRFSNIAKSLDSIL--IDTRKPVLLEDIDLLDFNDTQ---LFH 128 +D + + + L++ + +D ++L+D+ + + + LF Sbjct: 136 EAGFKVLFTRTTDLVQKLQVARRELGLEAAIGRLDRFDLLILDDLAYVTKDQAETSVLFE 195 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD 157 +I S SL++TA WG PD Sbjct: 196 LI-SARYERRSLMITANQPFGEWGRIFPD 223 >gi|118347942|ref|XP_001007447.1| AAA family ATPase, CDC48 subfamily protein [Tetrahymena thermophila] gi|89289214|gb|EAR87202.1| AAA family ATPase, CDC48 subfamily protein [Tetrahymena thermophila SB210] Length = 839 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 65/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R V+L GP GSGK+ +A ++++ + F N+ K+ + + Sbjct: 272 PPRGVLLFGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGEAEGNLRKAFEEAEKN 331 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + ++++D + QL +++ + +++ A P S Sbjct: 332 SPAIIFIDELDSIAPKRDKVSGEVERRVVSQLLTLMDGLKGRGHVIVIAATNRPNSLD-- 389 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PD+ +++ + + +D+ + Sbjct: 390 -PALR-RFGRFDREIDIGVPDEIGRMEIL--RIHTKNMKLDEDV 429 Score = 38.2 bits (88), Expect = 1.1, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ + S L ++ + + E D Sbjct: 545 PSKGVLFYGPPGCGKTLLAKAVANECSANFISIKGPELLTMWFGESEANVREVFDKA 601 >gi|74188900|dbj|BAE39223.1| unnamed protein product [Mus musculus] Length = 442 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 222 PPKGVLMYGPPGTGKTLLARACAAQTKATFLELAGPQLVQMFIGDGAKLVRDAFALAKEK 281 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + + ++N + Q ++ + ++ A Sbjct: 282 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 341 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ +P+++ +++ R++ + + + R Sbjct: 342 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 395 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ ++ G T Sbjct: 396 GAQCKAVCVEAGMIALRRGAT 416 >gi|320100449|ref|YP_004176041.1| AAA family ATPase, CDC48 subfamily [Desulfurococcus mucosus DSM 2162] gi|319752801|gb|ADV64559.1| AAA family ATPase, CDC48 subfamily [Desulfurococcus mucosus DSM 2162] Length = 746 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 22/163 (13%), Positives = 59/163 (36%), Gaps = 33/163 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP G+GK+ LA +++ + + K + + Sbjct: 221 PPKGILLYGPPGTGKTLLAKALANEIGAYFITINGPEIMSKFYGESEERLRKIFEEAQAN 280 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + + +++ A P + Sbjct: 281 APAVIFIDEIDSIAPKREEVTGEVEKRVVAQLLTLMDGLKERGKVIVIGATNRPDAID-- 338 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L + ++I PD ++++ R + + + + Sbjct: 339 -PALRRPGRFDREIEIPPPDKRARKEILAVH--TRNMPLTEDV 378 Score = 39.4 bits (91), Expect = 0.44, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 19/32 (59%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + ++L GP G+GK+ LA + +S + + Sbjct: 497 PPKGILLFGPPGTGKTLLAKAVATESGANFIA 528 >gi|224127332|ref|XP_002329251.1| predicted protein [Populus trichocarpa] gi|222870705|gb|EEF07836.1| predicted protein [Populus trichocarpa] Length = 776 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 64/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F N+ K+ + + Sbjct: 221 PPRGILLYGPPGTGKTLIARAIANETGAFFFCINGPEIMSKMAGESEQNLRKAFEEAEKN 280 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 V +++ID + QL +++ + +++ A P S Sbjct: 281 APAIVFIDEIDSIAPKREKTGGEVERRIVSQLLTLMDGLKARAHVIVIGATNRPNSLD-- 338 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PD+ +V+ +++ + + + Sbjct: 339 -PALR-RFGRFDKEIDIGVPDEVGRLEVLRVH--TKKMKLSEDV 378 Score = 39.4 bits (91), Expect = 0.42, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 494 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKA 550 >gi|270308478|ref|YP_003330536.1| ATPase, AAA family [Dehalococcoides sp. VS] gi|270154370|gb|ACZ62208.1| ATPase, AAA family [Dehalococcoides sp. VS] Length = 457 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 53/137 (38%), Gaps = 19/137 (13%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLL 119 +I GP GSGK+ LANI + + + S L ++ + R+ + E + Sbjct: 58 PSLIFWGPPGSGKTTLANIIARRLDAHFSALSAVSAGVADLRRVVEEARERLKFERRRTI 117 Query: 120 DFNDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 F D H N + + +L+ A T S+ V L SR A V ++ Sbjct: 118 LFIDEI--HRFNKSQQDAILPYVEDGTVVLIGATTENPSFEVNSA-LLSR---AQVYVLN 171 Query: 172 LPDDDFLEKVIVKMFAD 188 + + ++ + D Sbjct: 172 PLSEKEISLILKRSLED 188 >gi|312870086|ref|ZP_07730222.1| replication-associated recombination protein A [Lactobacillus oris PB013-T2-3] gi|311094389|gb|EFQ52697.1| replication-associated recombination protein A [Lactobacillus oris PB013-T2-3] Length = 441 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 37/202 (18%), Positives = 74/202 (36%), Gaps = 37/202 (18%) Query: 54 RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKP- 110 LI++ +I GP G GK+ LA I + ++++ FS + S+ I ++ Sbjct: 44 ELIENDQ---LSSLIFWGPPGVGKTTLAEIIAQQTKAHFVTFSAVTSSIKDIRKLMQEAE 100 Query: 111 ----------VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 +++I + F + S +L+ A T S+ + L S Sbjct: 101 QNREYGERTICFIDEIHRFNKAQQDAFLPF---VERGSIILIGATTENPSFEINSA-LLS 156 Query: 161 R-----LKAATVVKISLPDDDFLEKVIVKMFADRQIFID--KKLAAYIVQRMERSLVFAE 213 R LK+ T + ++ +++ + A Q+ +D I Q A Sbjct: 157 RCKVFVLKSLTTADL----EEVIKRALAHPAAFPQLEVDCQPDAIHLIAQFAN---GDAR 209 Query: 214 KLVDKMDNLAL---SRGMGITR 232 ++ ++ L G +T Sbjct: 210 VALNTLEMAVLNGKREGKKVTI 231 >gi|302335915|ref|YP_003801122.1| Recombination protein MgsA [Olsenella uli DSM 7084] gi|301319755|gb|ADK68242.1| Recombination protein MgsA [Olsenella uli DSM 7084] Length = 462 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 57/134 (42%), Gaps = 17/134 (12%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP+G+GK+ LA I ++ + + A + ++ R+ E L T L Sbjct: 56 VLLYGPAGTGKTTLARIIANTTHAEFVEVSAVT-GTVRDLRREIDAAESRLLASGRRTIL 114 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N + + +L+ A T + V L SR + VV+++ D Sbjct: 115 FVDEIHRFNRTQQDALLHAVEDRTVVLVGATTENPYFEVNSA-LISR---SRVVELTPLD 170 Query: 175 DDFLEKVIVKMFAD 188 D+ + ++ + D Sbjct: 171 DEAVRLLVRRAVDD 184 >gi|297616541|ref|YP_003701700.1| ATPase AAA [Syntrophothermus lipocalidus DSM 12680] gi|297144378|gb|ADI01135.1| AAA ATPase central domain protein [Syntrophothermus lipocalidus DSM 12680] Length = 429 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 60/167 (35%), Gaps = 33/167 (19%) Query: 44 LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST-----RFSNIAK 98 LV R+I+ +IL GP G+GK+ L NI + K+RS S Sbjct: 36 LVGPG-APLRRMIERDQ---LHSMILYGPPGTGKTTLGNIIAKKTRSHFEYLKAVSTTTA 91 Query: 99 SLDSILIDTRKPVLLEDIDLLDFNDTQLF----HIINSIH--------QYDSSLLMTART 146 + + + + + T LF H N + +L+ A T Sbjct: 92 DIRQLAGEAGQRL------KFYGQRTILFLDEIHRFNKAQQDALLPMVEEGIFILIGATT 145 Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD--RQI 191 + + L SR + + D+ +E+++++ D R + Sbjct: 146 ENPLYEINSA-LLSR---THIYVLEPLDEQAIERILLRALNDKERGL 188 >gi|242398512|ref|YP_002993936.1| CDC48/VCP like protein, AAA superfamily [Thermococcus sibiricus MM 739] gi|242264905|gb|ACS89587.1| CDC48/VCP like protein, AAA superfamily [Thermococcus sibiricus MM 739] Length = 810 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 24/162 (14%), Positives = 62/162 (38%), Gaps = 33/162 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109 P + V+L GP G+GK+ LA ++++ + + + L + ++ + Sbjct: 215 PPKGVLLYGPPGTGKTLLAKAVANEANAHFIAINGPEIMSKYYGESEERLREVFKESEEN 274 Query: 110 ---PVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + +++ A P + Sbjct: 275 APSIIFIDEIDAIAPKRGEVTGEVEKRVVAQLLTLMDGLKSRGKVIVIGATNRPDALD-- 332 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196 P L + ++I +PD ++++ R + I+ Sbjct: 333 -PALRRPGRFDREIEIGVPDKQGRKEILQ--IHTRGMPIEPD 371 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 46/142 (32%), Gaps = 42/142 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP G+GK+ LA + +S + NI + Sbjct: 551 PPKGILLYGPPGTGKTLLAKAVATESEANFIGIRGPEVLSKWVGESEKNIREIFRKARQA 610 Query: 107 TRKPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL ++ I + +++ A P Sbjct: 611 APTVIFIDEIDAIAPRRGSDVNRVTDRLINQLLTEMDGIEENSGVVVIAATNRPDILDPA 670 Query: 155 L--------------PDLCSRL 162 L PD+ +RL Sbjct: 671 LLRPGRFDRIILVPAPDVKARL 692 >gi|156382458|ref|XP_001632570.1| predicted protein [Nematostella vectensis] gi|156219628|gb|EDO40507.1| predicted protein [Nematostella vectensis] Length = 432 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 55/153 (35%), Gaps = 31/153 (20%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 ++L GP G GK+ LA+I ++ +R T ++ T ++++ + N+ Sbjct: 32 PSMVLWGPPGCGKTTLAHIVANNARKT----TTTRFVTLSATTSGINDIKEVVKVAKNEQ 87 Query: 125 QLF-----------HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLK 163 Q+F H N + + L+ T L SR Sbjct: 88 QMFRRKTILFVDEIHRFNKTQQDTFLPHVENGTITLIGATTENPSFQLNTA---LLSR-- 142 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196 V+ + + L++++ + + I+ K Sbjct: 143 -CRVIVLDKLSSEHLQRILCRAVENMGCVIENK 174 >gi|39997165|ref|NP_953116.1| recombination factor protein RarA [Geobacter sulfurreducens PCA] gi|39984055|gb|AAR35443.1| ATPase, AAA family [Geobacter sulfurreducens PCA] gi|307634974|gb|ADI84901.2| stalled replication fork rescue ATPase [Geobacter sulfurreducens KN400] Length = 440 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 41/197 (20%), Positives = 76/197 (38%), Gaps = 32/197 (16%) Query: 67 VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I GP GSGK+ LA + ++ KS FS I + I ++ E+ +T Sbjct: 55 LIFWGPPGSGKTTLARVIANATKSHFIFFSAILSGIKEIREIVKEA---EEEKKYRGRNT 111 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + + ++ A T S+ V P L SR V+ ++ Sbjct: 112 ILFVDEIHRFNKSQQDAFLPYVERGTFTIIGATTENPSFEVVAP-LLSR---CKVLVLNP 167 Query: 173 PDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA-L 224 + +E+++ AD + D A++ E+S ++ ++ A L Sbjct: 168 LSQENVEQILRSALADPERGLGASGLAADDDALAFMA---EQSGGDGRVALNTLETAARL 224 Query: 225 SRGMGITRSLAAEVLKE 241 + I E +++ Sbjct: 225 VKNGRIDLESVREAIQK 241 >gi|38233937|ref|NP_939704.1| recombination factor protein RarA [Corynebacterium diphtheriae NCTC 13129] gi|38200198|emb|CAE49879.1| Conserved hypothetical protein (putative ATP/GTP binding protein) [Corynebacterium diphtheriae] Length = 456 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 36/191 (18%), Positives = 74/191 (38%), Gaps = 32/191 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRF-------------SNIAKSLDSILIDTRKPVLL 113 VIL GP G+GK+ +A++ S + I ++ +++ R + + Sbjct: 73 VILYGPPGTGKTTIASLISAGTGHEFVGLSALNSGVKEIREVIDQARRNLIHGKRTVLFI 132 Query: 114 EDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +++ L + + + LL+ A T S+ V P L SR + ++++ Sbjct: 133 DEVHRFSKTQQDALL----AAVENRTVLLVAATTENPSFSVVAP-LLSR---SLILQLKP 184 Query: 173 P--DD---DFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL--ALS 225 DD L + K D +I I + +V S A + + ++ +L+ Sbjct: 185 LTHDDIKTVLLHALQDKRGLDNRITISDEALEQLVL---LSGGDARRSLTYLEAASESLA 241 Query: 226 RGMGITRSLAA 236 G +T + Sbjct: 242 DGEELTPEIIR 252 >gi|229122163|ref|ZP_04251378.1| Prophage LambdaBa02, DNA replication protein DnaC [Bacillus cereus 95/8201] gi|228661289|gb|EEL16914.1| Prophage LambdaBa02, DNA replication protein DnaC [Bacillus cereus 95/8201] Length = 196 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 51/125 (40%), Gaps = 24/125 (19%) Query: 52 AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------- 104 AV+ + ++ W +++ G G+GK+ LA ++ + + +S+ +L Sbjct: 32 AVKYVKTFKEWNGESLMIWGEPGNGKTHLAAAVVNELSKKGYIVVFQSVPELLQRIRSTF 91 Query: 105 --------------IDTRKPVLLEDIDL---LDFNDTQLFHIINSIHQYDSSLLMTARTF 147 + ++L+DI ++ + +LF+II+ ++ + L T+ Sbjct: 92 NSENKENETQIMRALLECDLLILDDIGAEKTTEWVEEKLFNIIDGRYRKELPTLYTSNLE 151 Query: 148 PVSWG 152 P Sbjct: 152 PKELK 156 >gi|313888444|ref|ZP_07822111.1| ATPase, AAA family [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845473|gb|EFR32867.1| ATPase, AAA family [Peptoniphilus harei ACS-146-V-Sch2b] Length = 433 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 54/141 (38%), Gaps = 23/141 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS-----LDSILIDTRKPVLLEDIDLLDF 121 V+ GP G GK+ LA I + + A + L +L + +++ + F Sbjct: 55 VLFYGPPGVGKTTLAEIIARTTNKNFVKLSAVTSNLKELREVLAKAEDSMKFDNVSTIVF 114 Query: 122 -NDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 ++ H N + L+ A T + V L SR++ ++ + Sbjct: 115 IDEI---HRFNKSQQDALLPFVERGVISLIGATTENPYFEVNRA-LLSRMQ---IINLHP 167 Query: 173 PDDDFLEKVIVKMFAD--RQI 191 +D LE ++ K +D R + Sbjct: 168 LEDKDLEDMMYKALSDKERGL 188 >gi|213401060|gb|ACJ47178.1| chromosomal replication initiation protein [Wolbachia endosymbiont of Armadillidium vulgare] Length = 134 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 38/94 (40%), Gaps = 1/94 (1%) Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 P + SRL V I+ + ++ +++ K + ++ + + Sbjct: 1 RSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQAKVERMNMYVPKDVLEFLARNI 60 Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 + ++ E ++K+ + +L G +T A+E L Sbjct: 61 KSNIRELEGALNKVAHTSLI-GRSMTVESASETL 93 >gi|188579356|ref|YP_001922801.1| IstB domain protein ATP-binding protein [Methylobacterium populi BJ001] gi|179342854|gb|ACB78266.1| IstB domain protein ATP-binding protein [Methylobacterium populi BJ001] Length = 243 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 58/150 (38%), Gaps = 36/150 (24%) Query: 32 FPRCLGISRDDLLVHSAIEQAVR-------LIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 FP ++ DL VR L D SR +L+G +GSGK+ LA Sbjct: 65 FPVMKTLAEFDLAASPVNAAVVRDLHQGNFLTD------SRNAVLIGGTGSGKTHLAIAI 118 Query: 85 -----SDKSRSTRFSNIAKSLDSILIDTRK--------------PVLLEDIDLLDFNDTQ 125 ++ RF N ++ + + R V+L+++ L F Sbjct: 119 GANCVREREARVRFFNTVDLVNQLEAEARAGKAGRLASQLSRTDLVILDELGYLPFPRAG 178 Query: 126 ---LFHIINSIHQYDSSLLMTARTFPVSWG 152 LFH+I+ +++ +S+++T W Sbjct: 179 GQMLFHLISRLYER-TSVIVTTNLPFAEWP 207 >gi|159899639|ref|YP_001545886.1| recombination factor protein RarA [Herpetosiphon aurantiacus ATCC 23779] gi|159892678|gb|ABX05758.1| AAA ATPase central domain protein [Herpetosiphon aurantiacus ATCC 23779] Length = 459 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 55/141 (39%), Gaps = 23/141 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD--FNDT 124 +IL GP G+GK+ LA I + S + S S + + V+ E + T Sbjct: 53 LILWGPPGTGKTTLARIIAGASSAHF---EPLSAVSAGVAELRKVVKEANERRGMYGKRT 109 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + + L+ A T S+ + L SR V+ + Sbjct: 110 VLFIDEIHRWNKAQQDAVLPAVEDGTVTLIGATTENPSFEINRA-LLSR---CRVIVLEA 165 Query: 173 PDDDFLEKVIVKMFAD--RQI 191 +D ++K+I + D R + Sbjct: 166 LEDAAIDKIIERALNDNERGL 186 >gi|108758514|ref|YP_632391.1| TPR repeat-containing ClpX C4-type zinc finger protein [Myxococcus xanthus DK 1622] gi|108462394|gb|ABF87579.1| tetratricopeptide repeat/ClpX C4-type zinc finger protein [Myxococcus xanthus DK 1622] Length = 565 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 11/113 (9%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTR 92 P + LV + QA L+ +R ++++GP GSGKS +W + + Sbjct: 337 PVTPALG----LVGQGVTQA--LLTQSLEAHARTLLVIGPEGSGKS----VWFQQLQREA 386 Query: 93 FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTAR 145 I D L + + +L+ED+D LD +L++AR Sbjct: 387 VGVITPVADLDLTASSRTLLVEDVDRLDATSHAALQAF-LARDSRPVVLLSAR 438 >gi|270159557|ref|ZP_06188213.1| conserved hypothetical protein [Legionella longbeachae D-4968] gi|289165647|ref|YP_003455785.1| recombination protein [Legionella longbeachae NSW150] gi|269987896|gb|EEZ94151.1| conserved hypothetical protein [Legionella longbeachae D-4968] gi|288858820|emb|CBJ12734.1| recombination protein [Legionella longbeachae NSW150] Length = 431 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 67/195 (34%), Gaps = 25/195 (12%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ +A + ++ + A I E++ + T L Sbjct: 49 MILWGPPGVGKTTIARVAAETFDCEWIALSAVFSGVKDIRAAIEKAQENL--IYGKHTLL 106 Query: 127 F----HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 F H N Q +LL + A T S+ V L SR A V + Sbjct: 107 FIDEIHRFNKAQQD--ALLPYTESGLVTFIGATTENPSFEVNSA-LLSR---AQVYVLEP 160 Query: 173 PDDDFLEKVIVKMFAD--RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG- 229 +D L ++ K + D++ I++ + ++++ + Sbjct: 161 LSEDELRQLFQKAHQAVLSHLQFDEEAIEMIIEFADGDARRLLNTLEQLQTACTAMNNEH 220 Query: 230 ITRSLAAEVLKETQQ 244 +T+ L + + Sbjct: 221 VTKDFVINSLAKNPR 235 >gi|158333693|ref|YP_001514865.1| transposase-associated ATP-binding protein [Acaryochloris marina MBIC11017] gi|158339312|ref|YP_001520489.1| transposase-associated ATP-binding protein [Acaryochloris marina MBIC11017] gi|158303934|gb|ABW25551.1| transposase-associated ATP-binding protein, putative [Acaryochloris marina MBIC11017] gi|158309553|gb|ABW31170.1| transposase-associated ATP-binding protein, putative [Acaryochloris marina MBIC11017] Length = 243 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 48/146 (32%), Gaps = 36/146 (24%) Query: 30 FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLA----- 81 F F C + + + + P W +IL GPSG GK+ LA Sbjct: 57 FDFSHCPQL----------NPAPLMQLAADPGWLERAENCLIL-GPSGVGKTHLATGVSK 105 Query: 82 ---------NIWSDKSRSTRFSNIAKSLDSIL----IDTRKPVLLEDIDLLDFNDTQ--- 125 ++ + L +D ++L+D+ ++ + Sbjct: 106 KMLEFGKRVKFFAANALVQHLQQAKLQLQLHPMLKKLDRYDLLVLDDLGYCKKSEAETSV 165 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSW 151 LF +I + SLL+TA W Sbjct: 166 LFELI-AHRYERKSLLITANQPFSQW 190 >gi|150005974|ref|YP_001300718.1| insertion sequence IS21-like putative ATP-binding protein [Bacteroides vulgatus ATCC 8482] gi|237726731|ref|ZP_04557212.1| transposase TnpB [Bacteroides sp. D4] gi|254883891|ref|ZP_05256601.1| transposase TnpB [Bacteroides sp. 4_3_47FAA] gi|294775528|ref|ZP_06741038.1| IstB-like ATP-binding protein [Bacteroides vulgatus PC510] gi|149934398|gb|ABR41096.1| insertion sequence IS21-like putative ATP-binding protein [Bacteroides vulgatus ATCC 8482] gi|229435257|gb|EEO45334.1| transposase TnpB [Bacteroides dorei 5_1_36/D4] gi|254836684|gb|EET16993.1| transposase TnpB [Bacteroides sp. 4_3_47FAA] gi|294450578|gb|EFG19068.1| IstB-like ATP-binding protein [Bacteroides vulgatus PC510] Length = 260 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 24/117 (20%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDTR 108 +IL+GPSG+GK+ LA + + +++ I+ I Sbjct: 103 LILMGPSGTGKTFLAAGLVFDAVKAGYKAYLMTMEDIVNCLRLKDISTPAMMTYNKILRA 162 Query: 109 KPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD--LCS 160 + + ++DI L T F++IN++H+ +S+++T P W L D L S Sbjct: 163 QLLAIDDIMLFPVKREEATAFFNLINTLHE-KTSIIITTNKAPTEWVETLNDEILAS 218 >gi|15922015|ref|NP_377684.1| cell division control protein [Sulfolobus tokodaii str. 7] gi|15622803|dbj|BAB66793.1| 587aa long hypothetical cell division control protein [Sulfolobus tokodaii str. 7] Length = 587 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 66/163 (40%), Gaps = 32/163 (19%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP G+GK+ +A +++ ++ IA+ + Sbjct: 360 PVKGLLLYGPPGTGKTSIAKALANELNASFIILSGEEISSAGPFNAGEIIAEKFHIARDN 419 Query: 107 TRKPVLLEDIDLLD----FND--TQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPD 157 + +++ID++ N+ T L ++N I + + +++ A P W + Sbjct: 420 APAIIFIDEIDMIARARGENEWRTALTELLNQMDGIRENEEIVVVGATNRP--WDLDPAI 477 Query: 158 LC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199 L R ++ + PD+ +V+ + R + +D++ Sbjct: 478 LRPGRFD--KIIYVPPPDEKGRAEVLKVLC--RGLTVDEETLQ 516 >gi|14591590|ref|NP_143672.1| cell division control [Pyrococcus horikoshii OT3] gi|3258278|dbj|BAA30961.1| 798aa long hypothetical transitional endoplasmic reticulum ATPase [Pyrococcus horikoshii OT3] Length = 798 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 34/217 (15%), Positives = 71/217 (32%), Gaps = 47/217 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106 P + V+L GP G+GK+ LA + +S + + NI + Sbjct: 552 PPKGVLLYGPPGTGKTLLAKAVATESEANFIAVRGPEVLSKWVGESEKNIREIFRKARQA 611 Query: 107 TRKPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL ++ I + +++ A P Sbjct: 612 APTVIFIDEIDAIAPRRGTDVNRVTDRLINQLLTEMDGIQENTGVVVIAATNRPDILDPA 671 Query: 155 LPDLC----SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSL 209 L L RL + + PD++ ++ R + + + + +R E Sbjct: 672 L--LRPGRFDRL-----ILVPAPDEEARFEIFKVH--TRSMPLADDVDLRELARRTEGYT 722 Query: 210 VFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 V + A+ +L ++K + D Sbjct: 723 GADIAAVCR--EAAMIAMRK---ALEKGIIKPGMKAD 754 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 23/162 (14%), Positives = 61/162 (37%), Gaps = 33/162 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109 P + V+L GP G+GK+ LA ++++ + + + L + + + Sbjct: 218 PPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEEN 277 Query: 110 ---PVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + +++ A P + Sbjct: 278 APSIIFIDEIDAIAPKRSEVTGEVEKRVVAQLLALMDGLKGRGKVIVIGATNRPDALD-- 335 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196 P L + +++ +PD ++++ R + I+ Sbjct: 336 -PALRRPGRFDREIEVGVPDKQGRKEILQ--IHTRGMPIEPD 374 >gi|297688785|ref|XP_002821855.1| PREDICTED: 26S protease regulatory subunit 6A-like [Pongo abelii] Length = 447 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 227 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 286 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + + ++N + Q ++ + ++ A Sbjct: 287 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 346 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ +P+++ +++ R++ + + + R Sbjct: 347 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 400 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ ++ G T Sbjct: 401 GAQCKAVCVEAGMIALRRGAT 421 >gi|149022610|gb|EDL79504.1| proteasome (prosome, macropain) 26S subunit, ATPase 3, isoform CRA_c [Rattus norvegicus] Length = 421 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 201 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 260 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + + ++N + Q ++ + ++ A Sbjct: 261 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 320 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ +P+++ +++ R++ + + + R Sbjct: 321 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 374 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ ++ G T Sbjct: 375 GAQCKAVCVEAGMIALRRGAT 395 >gi|74268141|gb|AAI03064.1| PSMC3 protein [Bos taurus] Length = 429 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 209 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 268 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + + ++N + Q ++ + ++ A Sbjct: 269 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 328 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ +P+++ +++ R++ + + + R Sbjct: 329 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 382 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ ++ G T Sbjct: 383 GAQCKAVCVEAGMIALRRGAT 403 >gi|264658023|emb|CBH31231.1| chromosomal replication initiator protein [Wolbachia endosymbiont of Simulium squamosum] Length = 99 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 3/59 (5%) Query: 111 VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 ++++D+ + D + FH N++ + L+++A P + SRL Sbjct: 41 LMVDDVQFISGKDSTQEEFFHTFNALIDQNKQLVISADRSPSDLDGVEERIKSRLGWGL 99 >gi|260753314|ref|YP_003226207.1| recombination factor protein RarA [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552677|gb|ACV75623.1| AAA ATPase central domain protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 449 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 38/255 (14%), Positives = 88/255 (34%), Gaps = 38/255 (14%) Query: 10 FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLL----VHSAIEQAVRLIDSWPSWPSR 65 + +K P+N+ + D++ V R++ + Sbjct: 11 LVFTENEKQPLPENRP----LADILRPK-HLSDVIGQAHVTGENGIIGRMV---AAGRLS 62 Query: 66 VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125 +IL GP G+GK+ +A + ++ RF ++ + + + E T Sbjct: 63 SLILWGPPGTGKTSIAQLLAESVG-MRFEMVSAIFSGVADLKKIFLKAEH-HRQQGRQTL 120 Query: 126 LF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKIS 171 LF H N + + +L+ T + L SR A VV ++ Sbjct: 121 LFIDEIHRFNKGQQDSFLPYIENGTFVLVGATTENPSFALNAA---LLSR---AQVVTLN 174 Query: 172 LPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229 D++ L ++ + + +D+ ++ + F + + LA++ Sbjct: 175 RLDEEALGLLLERAETVSGQLLPVDEDARKALIASADGDGRFLLNQAEIL--LAMNLTKS 232 Query: 230 ITRSLAAEVLKETQQ 244 ++ A++L++ Sbjct: 233 LSVPELAQILQKRMA 247 >gi|158339225|ref|YP_001520402.1| transposase-associated ATP-binding protein [Acaryochloris marina MBIC11017] gi|158309466|gb|ABW31083.1| transposase-associated ATP-binding protein, putative [Acaryochloris marina MBIC11017] Length = 243 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 48/146 (32%), Gaps = 36/146 (24%) Query: 30 FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLA----- 81 F F C + + + + P W +IL GPSG GK+ LA Sbjct: 57 FDFSHCPQL----------NPAPLMQLAADPGWLERAENCLIL-GPSGVGKTHLATGVSK 105 Query: 82 ---------NIWSDKSRSTRFSNIAKSLDSIL----IDTRKPVLLEDIDLLDFNDTQ--- 125 ++ + L +D ++L+D+ ++ + Sbjct: 106 KMLEFGKRVKFFAANALVQHLQQAKLQLQLHPMLKKLDRYDLLVLDDLGYCKKSEAETSV 165 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSW 151 LF +I + SLL+TA W Sbjct: 166 LFELI-AHRYERKSLLITANQPFSQW 190 >gi|161528731|ref|YP_001582557.1| ATPase AAA [Nitrosopumilus maritimus SCM1] gi|160340032|gb|ABX13119.1| AAA family ATPase, CDC48 subfamily [Nitrosopumilus maritimus SCM1] Length = 721 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 28/163 (17%), Positives = 63/163 (38%), Gaps = 33/163 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTR-- 108 P ++L GP G GK+ LA + + +S + F L I + + Sbjct: 212 PHSGILLYGPPGCGKTLLAKVMASESEANMFPINGPEIMNKYYGETEAKLRDIFKEAKDN 271 Query: 109 --KPVLLEDIDLLD-FNDTQ-----------LFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + + L +++ ++ + +++ A P S Sbjct: 272 SPSIIFIDEIDAIAPKREEAYGDVEKRVVAQLLALMDGLNDRGNVIVLGATNRPDS---V 328 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L + +IS+P++D +++ R + ID+ + Sbjct: 329 DPALRRPGRFDREFEISVPNEDGRIEILQ--IHTRGMPIDEDI 369 Score = 39.7 bits (92), Expect = 0.39, Method: Composition-based stats. Identities = 7/31 (22%), Positives = 15/31 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF 93 P + ++ GP G GK+ L + ++ + Sbjct: 485 PPKGALIYGPPGCGKTLLGRALATETGANMI 515 >gi|95769198|gb|ABF57414.1| proteasome 26S ATPase subunit 3 [Bos taurus] Length = 428 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 208 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 267 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + + ++N + Q ++ + ++ A Sbjct: 268 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 327 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ +P+++ +++ R++ + + + R Sbjct: 328 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 381 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ ++ G T Sbjct: 382 GAQCKAVCVEAGMIALRRGAT 402 >gi|18129329|emb|CAC83488.1| DnaA protein [Wolbachia endosymbiont of Dirofilaria repens] Length = 136 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 40/101 (39%), Gaps = 1/101 (0%) Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 P + SRL V I+ + ++ I++ + ++ + + Sbjct: 1 RSPSDLDGVEERIKSRLGWGLVADINKTTFELRLGILQAKVEQMNIYVPDDILEFLARNI 60 Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + ++ E ++K+ + +L G +T A+E L + + + Sbjct: 61 KSNIRELEGALNKVAHTSLI-GRSMTVESASETLADLLRSN 100 >gi|261401234|ref|ZP_05987359.1| replication-associated recombination protein A [Neisseria lactamica ATCC 23970] gi|269208822|gb|EEZ75277.1| replication-associated recombination protein A [Neisseria lactamica ATCC 23970] Length = 436 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 61/153 (39%), Gaps = 23/153 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G GK+ LA I + + A S + D R + +I L T L Sbjct: 50 MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIRGAIDKAEIALQQGRATIL 107 Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 F H N Q D+ L L+T A T S+ V P L SR A V + Sbjct: 108 FVDEVHRFNKAQQ-DAFLPYVENGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQPL 162 Query: 174 DDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQ 203 D L+K+I K+ A R I+ +V Sbjct: 163 SSDGLKKLIAKVSALPEYRNFTIEADAQELLVN 195 >gi|139436949|ref|ZP_01771109.1| Hypothetical protein COLAER_00082 [Collinsella aerofaciens ATCC 25986] gi|133776596|gb|EBA40416.1| Hypothetical protein COLAER_00082 [Collinsella aerofaciens ATCC 25986] Length = 454 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 70/187 (37%), Gaps = 34/187 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI--------------DTRKPVL 112 VIL GP+G+GK+ LA+I ++ ++S A + + D R + Sbjct: 61 VILYGPAGTGKTTLAHIIANHTKSEFVEVSAVTGTVKDLRRVIDEAKTRLNTYDRRTILF 120 Query: 113 LEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++I + L H + + +++ A T + V L SR VV++ Sbjct: 121 IDEIHRFSKSQQDALLH----AVENRTVIMIGATTENPYFEVNSA-LLSR---GRVVELE 172 Query: 172 LPDDDFLEKVIVKMFADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 D+ + +I + Q D+ A I + A + L L+ Sbjct: 173 HLKDEDIATLIERALEAPQGLNGKFSADEDTAKTICT------LAAGDARSALTTLELAS 226 Query: 227 GMGITRS 233 + +TR Sbjct: 227 EIAVTRP 233 >gi|300707453|ref|XP_002995933.1| hypothetical protein NCER_101048 [Nosema ceranae BRL01] gi|239605177|gb|EEQ82262.1| hypothetical protein NCER_101048 [Nosema ceranae BRL01] Length = 788 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 22/142 (15%), Positives = 51/142 (35%), Gaps = 42/142 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP GSGK+ +A ++++ + + +N+ K+ D + Sbjct: 248 PPKGILLYGPPGSGKTLIAKAIANETGAFIYMINGPEIMSKMAGESENNLRKAFDEAEKN 307 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148 + ++++D L QL +++ + +++ A P Sbjct: 308 KPAIIFIDEVDSLAPKRDKTQGEVERRIVSQLLTLMDGAKAREGVIVLAATNRPNSIDPA 367 Query: 149 --------VSWGVCLPDLCSRL 162 + +PD RL Sbjct: 368 LRRYGRFGKELEIGVPDATGRL 389 Score = 39.0 bits (90), Expect = 0.63, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 67/194 (34%), Gaps = 49/194 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106 PS+ V+ GP G GK+ LA + + ++ S N+ + D Sbjct: 521 PSKGVLFYGPPGCGKTLLAKAVATECKANFISVKGPELLTMWYGESEANVRELFDRARAA 580 Query: 107 TRKPVLLEDIDLLD-----------FNDTQLFHIINSI-------HQYDSSLLMTARTFP 148 + ++ID + +D +IN I + + ++ A P Sbjct: 581 APCVLFFDEIDSVAKSRGSASGSGGADDR----VINQILTEMDGMNAKKNVFIIGATNRP 636 Query: 149 VSWG--VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRM 205 + P RL +V I LPD D ++ R+ + + ++V+ Sbjct: 637 DQLDSAIMRP---GRLD--QLVYIPLPDADSRMSIL--KAVLRKTPLSPDINLNHLVEAT 689 Query: 206 ER-SLVFAEKLVDK 218 +R S ++ + Sbjct: 690 DRFSGADLTEICQR 703 >gi|297619992|ref|YP_003708097.1| AAA family ATPase [Methanococcus voltae A3] gi|297378969|gb|ADI37124.1| AAA family ATPase, CDC48 subfamily [Methanococcus voltae A3] Length = 781 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 62/162 (38%), Gaps = 33/162 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + V+L GP G+GK+ LA +++S + + N+ K + + Sbjct: 210 PPKGVLLAGPPGTGKTLLAKAVANESGANYYTINGPEIMSKYVGETEENLRKIFEEAEEN 269 Query: 107 TRKPVLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + ++ QL +++ + +++ A P S + Sbjct: 270 APSVIFIDEIDAVAPKRDEVTGEVERRMVAQLLTLLDGLENRGQVVILAATNRPDSIDIA 329 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196 L RL I +PD + +++ R + ++ Sbjct: 330 LRR-PGRLDRELT--IGIPDRNARREILD--IHTRSMPLEAD 366 >gi|46447333|ref|YP_008698.1| recombination factor protein RarA [Candidatus Protochlamydia amoebophila UWE25] gi|46400974|emb|CAF24423.1| conserved hypothetical protein [Candidatus Protochlamydia amoebophila UWE25] Length = 422 Score = 47.8 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 29/195 (14%), Positives = 70/195 (35%), Gaps = 32/195 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSR-------------STRFSNIAKSLDSILIDTRKPVLL 113 VIL GP G GK+ +A +++ + I ++ + L + + Sbjct: 45 VILWGPPGCGKTSIARLYAQAFNMQFISMSAIFSGVADLKKTIKEAQNQPLFHKGTLLFV 104 Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKIS 171 ++I + + F + + +L+ T L SRL+ V+ I Sbjct: 105 DEIHRFNKSQQDAFLPF---VENGTIILIGATTENPSFYLNGA---LLSRLR---VLPIY 155 Query: 172 LPDDDFLEKVI---VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228 D LE+++ K FA + + + +++ + + L++ + + Sbjct: 156 PLDGFSLEQLLERYEKQFAP--LPLTAEARHWLITCAQGDGRYLYNLIENLRYAS---KQ 210 Query: 229 GITRSLAAEVLKETQ 243 + L ++ ++ Sbjct: 211 ILDIPLLEKIFQKRS 225 >gi|307245272|ref|ZP_07527363.1| Replication-associated recombination protein A [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254221|ref|ZP_07536065.1| Replication-associated recombination protein A [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258684|ref|ZP_07540419.1| Replication-associated recombination protein A [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306853916|gb|EFM86130.1| Replication-associated recombination protein A [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862820|gb|EFM94770.1| Replication-associated recombination protein A [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867341|gb|EFM99194.1| Replication-associated recombination protein A [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 428 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 41/206 (19%), Positives = 72/206 (34%), Gaps = 35/206 (16%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 S +I GP G+GK+ LA I + + R S + + I + ++ Sbjct: 31 SHSMIFWGPPGTGKTTLAEIIAHHFDAEVERLSAVTSGVKEIREAIERA----KLNRQTG 86 Query: 122 NDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATV 167 T LF H N Q D +++ T L SR A + Sbjct: 87 RRTLLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNA---LLSR---AKI 140 Query: 168 VKISLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 + + +V+ D R + I+ + + + FA ++ M Sbjct: 141 YILKPLQAVEIVQVLTNALYDKERGLGNESYCIEDNVIELLADYVNGDARFALNCLELMS 200 Query: 221 NLALS--RGMGITRSLAAEVLKETQQ 244 ++A +G + ++L AEVL E Q Sbjct: 201 DMAEISPQGKRLNKALLAEVLGERQA 226 >gi|332259898|ref|XP_003279021.1| PREDICTED: 26S protease regulatory subunit 6A [Nomascus leucogenys] Length = 439 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 219 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 278 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + + ++N + Q ++ + ++ A Sbjct: 279 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 338 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ +P+++ +++ R++ + + + R Sbjct: 339 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 392 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ ++ G T Sbjct: 393 GAQCKAVCVEAGMIALRRGAT 413 >gi|169824140|ref|YP_001691751.1| cell division protein [Finegoldia magna ATCC 29328] gi|302380855|ref|ZP_07269318.1| putative Cell division protease FtsH [Finegoldia magna ACS-171-V-Col3] gi|167830945|dbj|BAG07861.1| cell division protein [Finegoldia magna ATCC 29328] gi|302311350|gb|EFK93368.1| putative Cell division protease FtsH [Finegoldia magna ACS-171-V-Col3] Length = 628 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 38/217 (17%), Positives = 73/217 (33%), Gaps = 53/217 (24%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + +++ FS + + Sbjct: 199 VLLVGPPGTGKTLLAQAVAGEAKVPFFSMSGSEFVEMFVGLGASKVRDLFKQAADKAPCI 258 Query: 111 VLLEDIDLL------------DFNDTQLFHIINS---IHQYDSSLLMTARTFP------- 148 V +++ID + D + L ++N +++ A P Sbjct: 259 VFIDEIDAIGKRRDTAGISGNDEREQTLNQLLNEMDGFDGNSGVVILAATNRPEILDPAL 318 Query: 149 -------VSWGVCLPDLCSRLK----AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 V LPDL R+ A +KI D + V + + + Sbjct: 319 TRPGRFDRQIPVELPDLQGRIDILKVHARKIKIEK--DMDYKAVALMTAGTSGAQLANIV 376 Query: 198 AAYIVQ--RMERSLVFAEKLVDKMDNLALSRGMGITR 232 ++ RM R++V E L++ ++ + + T Sbjct: 377 NEAALRAVRMGRNIVTQEDLIESVEVVIAGQQRKGTV 413 >gi|71894847|ref|NP_001026361.1| 26S protease regulatory subunit 6A [Gallus gallus] gi|224051055|ref|XP_002199964.1| PREDICTED: proteasome 26S ATPase subunit 3 [Taeniopygia guttata] gi|53134709|emb|CAG32356.1| hypothetical protein RCJMB04_23k2 [Gallus gallus] Length = 422 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 202 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 261 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + + ++N + Q ++ + ++ A Sbjct: 262 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 321 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ +P+++ +++ R++ + + + R Sbjct: 322 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 375 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ ++ G T Sbjct: 376 GAQCKAVCVEAGMIALRRGAT 396 >gi|292670832|ref|ZP_06604258.1| replication-associated recombination protein A [Selenomonas noxia ATCC 43541] gi|292647453|gb|EFF65425.1| replication-associated recombination protein A [Selenomonas noxia ATCC 43541] Length = 472 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 62/173 (35%), Gaps = 28/173 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I GP G GK+ LA I + ++++ FS + + I ++ D + + Sbjct: 84 MIFWGPPGVGKTTLAQIIAAQTKAKFITFSAVTSGIKDIRTVMQEA----DRRRIYGDRI 139 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +F H N + S +L+ A T S+ + L SR V + Sbjct: 140 IVFVDEIHRFNKAQQDAFLPFVEKGSIVLIGATTENPSFEINSA-LLSR---CRVFVLQG 195 Query: 173 PD-DDFLEKVIVKMFADR-----QIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 DD + + +DR +I + + A I A ++ + Sbjct: 196 LTIDDIKRLLQHALSSDRELRVLRIHLSDEGIAAIAAFANGDARSALSTLEML 248 >gi|18129325|emb|CAC83639.1| DnaA protein [Wolbachia endosymbiont of Onchocerca ochengi] Length = 131 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 38/88 (43%), Gaps = 1/88 (1%) Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218 SRL V I+ + ++ I++ + ++ + ++ ++ E ++K Sbjct: 10 KSRLGWGLVADINETTFELRLGILQIKVEQMNIYVPDDVLEFLAKNIKSNIRELEGALNK 69 Query: 219 MDNLALSRGMGITRSLAAEVLKETQQCD 246 + + +L G IT A+E L + + + Sbjct: 70 VVHTSLI-GRSITVESASETLADLLRSN 96 >gi|291384964|ref|XP_002709141.1| PREDICTED: proteasome 26S ATPase subunit 3 [Oryctolagus cuniculus] Length = 439 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 219 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 278 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + + ++N + Q ++ + ++ A Sbjct: 279 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 338 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ +P+++ +++ R++ + + + R Sbjct: 339 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 392 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ ++ G T Sbjct: 393 GAQCKAVCVEAGMIALRRGAT 413 >gi|145590270|ref|YP_001152272.1| replication factor C large subunit [Pyrobaculum arsenaticum DSM 13514] gi|158514159|sp|A4WGV3|RFCL_PYRAR RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|145282038|gb|ABP49620.1| AAA ATPase, central domain protein [Pyrobaculum arsenaticum DSM 13514] Length = 422 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 36/196 (18%), Positives = 68/196 (34%), Gaps = 33/196 (16%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILIDT 107 +R V+L GP G GK+ L + + + S+ Sbjct: 56 ARAVLLAGPPGVGKTTLIHALAREIGYELIELNASDVRTAERLKEVVGRGLREGSLFGYG 115 Query: 108 RKPVLLEDIDLLDFNDTQ--LFHIINSIHQYDSSLLMTARTF--PVSWGVCLPDLCSRLK 163 K VL +++D L + L II I ++MTA P L D+ Sbjct: 116 GKIVLFDEVDGLHVKEDAGGLEAIIEIIENSKVPIVMTANNPYDPRFRP--LRDI----- 168 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + VV + ++ + +V+ ++ +++ I + SL ++ + + Sbjct: 169 -SLVVNLKRLSEEEVVEVLRRICTSEGAKCEEEALRSIAKS---SLGDLRAAINDL-QMY 223 Query: 224 LSRGMG-ITRSLAAEV 238 LS G +T V Sbjct: 224 LSGGRKTLTVDDIKRV 239 >gi|90078188|dbj|BAE88774.1| unnamed protein product [Macaca fascicularis] Length = 423 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 203 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 262 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + + ++N + Q ++ + ++ A Sbjct: 263 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 322 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ +P+++ +++ R++ + + + R Sbjct: 323 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 376 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ ++ G T Sbjct: 377 GAQCKAVCVEAGMIALRRGAT 397 >gi|13928808|ref|NP_113783.1| 26S protease regulatory subunit 6A [Rattus norvegicus] gi|1710984|gb|AAB70882.1| spermatogenic cell/sperm-associated Tat-binding protein homolog Sata [Rattus norvegicus] Length = 442 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 222 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 281 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + + ++N + Q ++ + ++ A Sbjct: 282 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQMDGFQPNTQVKVIAATNRVDIL 341 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ +P+++ +++ R++ + + + R Sbjct: 342 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 395 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ ++ G T Sbjct: 396 GAQCKAVCVEAGMIALRRGAT 416 >gi|73982398|ref|XP_860742.1| PREDICTED: similar to 26S protease regulatory subunit 6A (TAT-binding protein 1) (TBP-1) (Spermatogenic cell/sperm-associated TAT-binding protein homolog SATA) isoform 3 [Canis familiaris] Length = 371 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 151 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 210 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + + ++N + Q ++ + ++ A Sbjct: 211 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 270 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ +P+++ +++ R++ + + + R Sbjct: 271 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 324 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ ++ G T Sbjct: 325 GAQCKAVCVEAGMIALRRGAT 345 >gi|228008337|ref|NP_032974.2| 26S protease regulatory subunit 6A [Mus musculus] gi|13543237|gb|AAH05783.1| Proteasome (prosome, macropain) 26S subunit, ATPase 3 [Mus musculus] gi|38304011|gb|AAH62019.1| Proteasome (prosome, macropain) 26S subunit, ATPase 3 [Rattus norvegicus] gi|62635506|gb|AAX90622.1| proteasome (prosome, macropain) 26S subunit, ATPase 3 [Mus musculus] gi|123226009|emb|CAM19025.1| proteasome (prosome, macropain) 26S subunit ATPase 3 [Mus musculus] gi|149022608|gb|EDL79502.1| proteasome (prosome, macropain) 26S subunit, ATPase 3, isoform CRA_a [Rattus norvegicus] Length = 442 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 222 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 281 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + + ++N + Q ++ + ++ A Sbjct: 282 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 341 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ +P+++ +++ R++ + + + R Sbjct: 342 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 395 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ ++ G T Sbjct: 396 GAQCKAVCVEAGMIALRRGAT 416 >gi|74191536|dbj|BAE30344.1| unnamed protein product [Mus musculus] gi|74207397|dbj|BAE30880.1| unnamed protein product [Mus musculus] gi|74219779|dbj|BAE40481.1| unnamed protein product [Mus musculus] Length = 423 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 203 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 262 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + + ++N + Q ++ + ++ A Sbjct: 263 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 322 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ +P+++ +++ R++ + + + R Sbjct: 323 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 376 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ ++ G T Sbjct: 377 GAQCKAVCVEAGMIALRRGAT 397 >gi|21361144|ref|NP_002795.2| 26S protease regulatory subunit 6A [Homo sapiens] gi|20532406|sp|P17980|PRS6A_HUMAN RecName: Full=26S protease regulatory subunit 6A; AltName: Full=26S proteasome AAA-ATPase subunit RPT5; AltName: Full=Proteasome 26S subunit ATPase 3; AltName: Full=Proteasome subunit P50; AltName: Full=Tat-binding protein 1; Short=TBP-1 gi|78070571|gb|AAI06921.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 3 [Homo sapiens] gi|119588322|gb|EAW67916.1| proteasome (prosome, macropain) 26S subunit, ATPase, 3 [Homo sapiens] gi|123990193|gb|ABM83907.1| proteasome (prosome, macropain) 26S subunit, ATPase, 3 [synthetic construct] gi|123999303|gb|ABM87228.1| proteasome (prosome, macropain) 26S subunit, ATPase, 3 [synthetic construct] gi|133776999|gb|AAH08713.4| Proteasome (prosome, macropain) 26S subunit, ATPase, 3 [Homo sapiens] gi|133777094|gb|AAH73165.3| Proteasome (prosome, macropain) 26S subunit, ATPase, 3 [Homo sapiens] gi|189069266|dbj|BAG36298.1| unnamed protein product [Homo sapiens] Length = 439 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 219 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 278 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + + ++N + Q ++ + ++ A Sbjct: 279 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 338 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ +P+++ +++ R++ + + + R Sbjct: 339 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 392 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ ++ G T Sbjct: 393 GAQCKAVCVEAGMIALRRGAT 413 >gi|289811638|ref|ZP_06542267.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 125 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 12/92 (13%), Positives = 28/92 (30%), Gaps = 16/92 (17%) Query: 8 YSFFVPDKQKNDQPKN-------------KEEQLFFSFPRCLGISRDDLLVHSAIEQAVR 54 ++ P + QP+ + + + + D+ + + + A Sbjct: 2 HNVVAPTQTTTAQPQRVAPAARSGWDNVPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARA 61 Query: 55 LIDSWPSWPSRV---VILVGPSGSGKSCLANI 83 P + L G +G GK+ L + Sbjct: 62 AARQVADNPGGAYNPLFLYGGTGLGKTHLLHA 93 >gi|223993867|ref|XP_002286617.1| hypothetical protein THAPSDRAFT_267952 [Thalassiosira pseudonana CCMP1335] gi|220977932|gb|EED96258.1| hypothetical protein THAPSDRAFT_267952 [Thalassiosira pseudonana CCMP1335] Length = 811 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 67/164 (40%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R V+L GP GSGK+ +A ++++ + F SN+ K+ + + Sbjct: 235 PPRGVLLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 294 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + Q+ +++ + Q S +++ A P S Sbjct: 295 APAIIFIDEIDSIAPKREKTNGEVERRIVSQMLTLMDGLKQRASVVVIGATNRPNSMD-- 352 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PD++ +V R + +D+ + Sbjct: 353 -PALR-RFGRFDREIDIGVPDENGRLEVF--RIHTRNMKLDEDV 392 >gi|149725084|ref|XP_001491841.1| PREDICTED: similar to proteasome (prosome, macropain) 26S subunit ATPase 3 isoform 1 [Equus caballus] Length = 423 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 203 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 262 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + + ++N + Q ++ + ++ A Sbjct: 263 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 322 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ +P+++ +++ R++ + + + R Sbjct: 323 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 376 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ ++ G T Sbjct: 377 GAQCKAVCVEAGMIALRRGAT 397 >gi|305662545|ref|YP_003858833.1| Proteasome-activating nucleotidase [Ignisphaera aggregans DSM 17230] gi|304377114|gb|ADM26953.1| Proteasome-activating nucleotidase [Ignisphaera aggregans DSM 17230] Length = 407 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 27/57 (47%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P + V+L GP G GK+ LA + ++ +T +A L I ++ E +L Sbjct: 176 PPKGVLLYGPPGCGKTLLAKAIAHETNATFIRLVASELAQKFIGEGARIVREVFELA 232 >gi|78188604|ref|YP_378942.1| recombination factor protein RarA [Chlorobium chlorochromatii CaD3] gi|78170803|gb|ABB27899.1| Recombination protein MgsA [Chlorobium chlorochromatii CaD3] Length = 453 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 44/218 (20%), Positives = 76/218 (34%), Gaps = 37/218 (16%) Query: 48 AIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107 A R ++ S VI G G GK+ LA I + + ++D+ + + Sbjct: 54 ANAPLRRFLE---SGQMPSVIFWGAPGCGKTTLAEICASTLQCHF--EQLSAVDAGVKEV 108 Query: 108 RKPVLLEDIDLLDFNDTQLF----HIIN--------SIHQYDSSLLMTARTFPVSWGVCL 155 RK + + LF H N + LL+ A T S+ V Sbjct: 109 RKALDIATRVRQAGQRCLLFIDEIHRFNKSQQDTLLHALEQGLILLIGATTENPSFEVNG 168 Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVK------MFADRQIFIDK-KLA-AYIVQRMER 207 L SR++ V + + LE+VI + +F +R I + ++ Y Sbjct: 169 A-LLSRMQ---VYTLKPLTAEELEQVIRRALATDALFRERSIELADLEVLWHYCA----- 219 Query: 208 SLVFAEKLVDKMDNL-ALSRGMGITRSLAAEVLKETQQ 244 A K ++ ++ AL + L E + Q Sbjct: 220 --GDARKALNAIEAAFALFPTNQSSVQLTREHFEAALQ 255 >gi|73748379|ref|YP_307618.1| ATP-binding protein [Dehalococcoides sp. CBDB1] gi|73660095|emb|CAI82702.1| ATP-binding protein, DnaC family [Dehalococcoides sp. CBDB1] Length = 435 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 57/156 (36%), Gaps = 35/156 (22%) Query: 50 EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID--- 106 E A+ + W ++ GPSG+GK+ LA +++ ST + K ++ D Sbjct: 80 EAALDFASNPTGW----LVFTGPSGAGKTHLAAAIANRRLSTGQPVLYKRASELIDDLKK 135 Query: 107 ------------------TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTAR 145 ++++D+ + ++ +L ++ + ++T Sbjct: 136 SFEPDSDAGYSQSFDILKNAPLLVIDDLTVQSGSEWSKEKLDQLLTYRFSQELPTIITLS 195 Query: 146 TFPVSWGVCLPDLCSRLKAATVVKI----SLPDDDF 177 T P + SRL ++ KI P+D Sbjct: 196 TPINELD---PRIQSRLLDKSISKIYTVAPNPEDSL 228 Score = 42.1 bits (98), Expect = 0.080, Method: Composition-based stats. Identities = 24/151 (15%), Positives = 51/151 (33%), Gaps = 30/151 (19%) Query: 51 QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------ 104 A L + P ++ G +G GK+ LA+ ++ + + L Sbjct: 264 AAYNLALDFSRNPESWLVFQGETGCGKTHLASAIVNERYRQGKPAMFVVVPEFLDHLRST 323 Query: 105 ---------------IDTRKPVLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTART 146 + K ++L+D + +L+ +IN + + ++T R Sbjct: 324 FSPESKTSYDQMFDAVKNAKLLVLDDFGEQSSTPWAQEKLYQVINYRYNRRLATVITTRC 383 Query: 147 FPVSWGVCLPDLCSRL---KAATVVKISLPD 174 V + SR + + V I+ P+ Sbjct: 384 QLSEIEVAI---SSRFVDPQISMVFNITAPN 411 >gi|317124709|ref|YP_004098821.1| recombination protein MgsA [Intrasporangium calvum DSM 43043] gi|315588797|gb|ADU48094.1| Recombination protein MgsA [Intrasporangium calvum DSM 43043] Length = 466 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 37/188 (19%), Positives = 70/188 (37%), Gaps = 26/188 (13%) Query: 54 RLIDSWPSWPSRV-VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 RLI+ + I+ GP G+GK+ LA++ + + A + + + Sbjct: 54 RLIEGSGGAAGPLSAIIWGPPGTGKTTLAHLVATAADRRFVELSAVTAGVKDVRSVMESA 113 Query: 113 LEDIDLLDFNDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCS 160 + + DL T LF H + + +L+ A T S+ V P L S Sbjct: 114 VRERDLY-GRQTVLFLDEIHRFTKAQQDALLPGVENRTVILVAATTENPSFSVIAP-LLS 171 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFAD-RQIF----IDKKLAAYIVQRMERSLVFAEKL 215 R + ++ + D+ + V+ D R ID ++V+ S A + Sbjct: 172 R---SVLITLGSLSDEDIRDVVRSALVDERGFAGAHLIDDDAMDHLVRT---SGGDARRA 225 Query: 216 VDKMDNLA 223 + ++ A Sbjct: 226 LTSLEAAA 233 >gi|301772544|ref|XP_002921690.1| PREDICTED: 26S protease regulatory subunit 6A-like [Ailuropoda melanoleuca] Length = 422 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 202 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 261 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + + ++N + Q ++ + ++ A Sbjct: 262 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 321 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ +P+++ +++ R++ + + + R Sbjct: 322 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 375 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ ++ G T Sbjct: 376 GAQCKAVCVEAGMIALRRGAT 396 >gi|148695574|gb|EDL27521.1| proteasome (prosome, macropain) 26S subunit, ATPase 3, isoform CRA_b [Mus musculus] Length = 421 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 201 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 260 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + + ++N + Q ++ + ++ A Sbjct: 261 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 320 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ +P+++ +++ R++ + + + R Sbjct: 321 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 374 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ ++ G T Sbjct: 375 GAQCKAVCVEAGMIALRRGAT 395 >gi|116334669|ref|YP_796196.1| recombination factor protein RarA [Lactobacillus brevis ATCC 367] gi|116100016|gb|ABJ65165.1| Recombination protein MgsA [Lactobacillus brevis ATCC 367] Length = 439 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 53/133 (39%), Gaps = 24/133 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +I GP G GK+ LA I + ++++T S ++DS + +K + + D T + Sbjct: 53 MIFWGPPGVGKTTLAEIIARQTQATFLS--FSAVDSSISKIKKIMHQAEADREIGEQTIV 110 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSR-----LKAATVVK 169 F H N + S +L+ A T S+ V L SR LKA Sbjct: 111 FVDEIHRFNKAQQDAFLPYVERGSIILIGATTENPSFEVNSA-LLSRCKVFVLKALATAD 169 Query: 170 ISLPDDDFLEKVI 182 I D L + Sbjct: 170 I----DQLLRNAL 178 >gi|167383517|ref|XP_001736564.1| transitional endoplasmic reticulum ATPase [Entamoeba dispar SAW760] gi|165900980|gb|EDR27180.1| transitional endoplasmic reticulum ATPase, putative [Entamoeba dispar SAW760] Length = 804 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 24/164 (14%), Positives = 66/164 (40%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G GK+ +A ++++ + F SN+ ++ + + Sbjct: 234 PPRGILLYGPPGCGKTMIARAIANETGAFFFLINGPEIMSKMAGESESNLRRAFEEAEKN 293 Query: 107 TRKPVLLEDIDLLD------FND------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + + +QL +++ + +++ A P + V Sbjct: 294 SPAIIFIDEIDSIAPKRDKSGGEVERRVVSQLLTLMDGLKARSQVIVIAATNRPNTIDVA 353 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L R + + + +PD + +++ +++ I + Sbjct: 354 LR----RFGRFDREIDLGIPDTEGRREILQ--IHTKKMKIADDV 391 >gi|2492523|sp|Q63569|PRS6A_RAT RecName: Full=26S protease regulatory subunit 6A; AltName: Full=26S proteasome AAA-ATPase subunit RPT5; AltName: Full=Proteasome 26S subunit ATPase 3; AltName: Full=Spermatogenic cell/sperm-associated Tat-binding protein homolog SATA; AltName: Full=Tat-binding protein 1; Short=TBP-1 gi|1395184|dbj|BAA11939.1| proteasomal ATPase (rat TBP1) [Rattus norvegicus] Length = 439 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 219 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 278 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + + ++N + Q ++ + ++ A Sbjct: 279 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 338 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ +P+++ +++ R++ + + + R Sbjct: 339 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 392 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ ++ G T Sbjct: 393 GAQCKAVCVEAGMIALRRGAT 413 >gi|328887929|ref|NP_001179113.2| 26S protease regulatory subunit 6A [Bos taurus] Length = 440 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 220 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 279 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + + ++N + Q ++ + ++ A Sbjct: 280 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 339 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ +P+++ +++ R++ + + + R Sbjct: 340 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 393 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ ++ G T Sbjct: 394 GAQCKAVCVEAGMIALRRGAT 414 >gi|254172418|ref|ZP_04879093.1| AAA family ATPase, CDC48 subfamily [Thermococcus sp. AM4] gi|214033347|gb|EEB74174.1| AAA family ATPase, CDC48 subfamily [Thermococcus sp. AM4] Length = 838 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 40/217 (18%), Positives = 78/217 (35%), Gaps = 47/217 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRKP 110 P + ++L GP G+GK+ LA +++S + + K + I R+ Sbjct: 579 PPKGILLYGPPGTGKTLLAKAVANESEANFIAIRGPEVLSKWVGETEKRIREIFRKARQA 638 Query: 111 ----VLLEDIDLLDFND------TQLFHIINS-------IHQYDSSLLMTARTFPVSWGV 153 V +++ID + L +IN I + +++ A P Sbjct: 639 APTVVFIDEIDAIAPARGSYEGGRHLDTLINQLLTEMDGIQENSGVVVIGATNRPDIIDP 698 Query: 154 CLPDLC----SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRME-R 207 L L RL + + PD+ + I K+ R + + + + + ++ E Sbjct: 699 AL--LRPGRFDRL-----ILVPAPDEKARLE-IFKVHTRR-VPLAEDVNLEELAKKTEGY 749 Query: 208 SLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 S E LV AL L +V+++ + Sbjct: 750 SGADIEALVR---EAALIALRRAVSRLPRDVVEKQSE 783 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 32/221 (14%), Positives = 79/221 (35%), Gaps = 54/221 (24%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109 P + V+L GP G+GK+ LA ++++ + + + L I + + Sbjct: 244 PPKGVLLYGPPGTGKTLLAKAVANEANAHFIAINGPEIMSKFYGESEERLREIFKEAEEN 303 Query: 110 ---PVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + +++ A P + Sbjct: 304 APSIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKGRGKVIVIAATNRPDAID-- 361 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK--------LAAYIVQR-- 204 P L + +++ +PD ++++ R + ++ + + +R Sbjct: 362 -PALRRPGRFDREIEVGVPDKQGRKEILQ--IHTRGMPLEPSFDKEEVLAVLEELARRGG 418 Query: 205 -MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 + + LV+ A G I E+LK + + Sbjct: 419 KFAEEVGKLKPLVE-----AAQSGREI-----KEILKGSGE 449 >gi|305663873|ref|YP_003860161.1| AAA ATPase central domain protein [Ignisphaera aggregans DSM 17230] gi|304378442|gb|ADM28281.1| AAA ATPase central domain protein [Ignisphaera aggregans DSM 17230] Length = 475 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 51/226 (22%), Positives = 90/226 (39%), Gaps = 42/226 (18%) Query: 31 SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--- 87 P L + + L+V +A + R ++L+GP G GKS A + Sbjct: 218 DLPDKLKMDIETLIVDPLNIKA--------KYAPRGILLIGPPGVGKSVTAEAIAQALTK 269 Query: 88 ---------SRSTRFSNIAKSLDSILIDTRK----PVLLEDIDLL-----DFNDTQLFHI 129 RS + K+L++I +K VL++D D L ++ + + Sbjct: 270 GIVRLTPSTYRSMWYGMTEKTLNNIFASLKKRKDIVVLIDDADFLVQRFNAIHEAYIAEV 329 Query: 130 ---INSIHQYDSSLLMTARTFP--VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 +N + L++ P + + P RL V+ + PD +K+I + Sbjct: 330 NIWLNILQDPLRPLVIMTTNVPEIIDQALIRP---GRLD--VVIFMGYPDKYMRKKIIKR 384 Query: 185 MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 + I I+ ++ IVQR R AE +D + +A S+G GI Sbjct: 385 ICESYNITINDQIIEEIVQR-TRWFNAAE--LDSLIRMAASKGHGI 427 >gi|17541368|ref|NP_501841.1| hypothetical protein K08F4.1 [Caenorhabditis elegans] gi|3878374|emb|CAA93081.1| C. elegans protein K08F4.1, confirmed by transcript evidence [Caenorhabditis elegans] Length = 850 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 34/205 (16%), Positives = 77/205 (37%), Gaps = 31/205 (15%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSR----------STRFSNIAKSLDSILIDTR---- 108 S++++L GP+G GKS LA I + ++ + +++ K L+ + +R Sbjct: 329 SSKMLLLSGPAGLGKSTLARIVARQAGYSTIDVNASDARTVADLNKVLEGAVKTSRTLDA 388 Query: 109 ----KPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSW--GV---CLPDLC 159 ++L++ID + + H++ I + R + + L DL Sbjct: 389 DQRPACLILDEIDGTPIDTIR--HLVRCIQATGKKAI---RRPIIGICNNLYTPALRDLR 443 Query: 160 SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 A V++ D L K + ++ ++ D + + + + + + Sbjct: 444 ---GVAWCVQLVATKQDVLAKRLEEICDRERLRCDLSTLRKLCELCANDMRHSINTLQWV 500 Query: 220 DNLALSRGMGITRSLAAEVLKETQQ 244 A I L EV+++ + Sbjct: 501 AVAARKSNRAIGMKLIHEVIEKEKG 525 >gi|74212095|dbj|BAE40211.1| unnamed protein product [Mus musculus] Length = 404 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 184 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 243 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + + ++N + Q ++ + ++ A Sbjct: 244 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 303 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ +P+++ +++ R++ + + + R Sbjct: 304 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 357 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ ++ G T Sbjct: 358 GAQCKAVCVEAGMIALRRGAT 378 >gi|86143957|ref|ZP_01062325.1| putative ATPase, AAA family protein [Leeuwenhoekiella blandensis MED217] gi|85829664|gb|EAQ48127.1| putative ATPase, AAA family protein [Leeuwenhoekiella blandensis MED217] Length = 425 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 52/143 (36%), Gaps = 24/143 (16%) Query: 65 RVVILVGPSGSGKSCLANIWSDKS---------------RSTRFSNIAKSLDSILIDTRK 109 +IL GP G GK+ LA+I +++S + AK+ + Sbjct: 40 PSLILWGPPGVGKTTLASIIAEESKRPFYVLSAINSGVKDVREVIDKAKNAGGLFTQKNP 99 Query: 110 PVLLEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168 + +++I + L + + L+ A T S+ V +P L SR V Sbjct: 100 LLFIDEIHRFSKSQQDSLL----AAVEKGWVTLIGATTENPSFEV-IPALLSR---CQVY 151 Query: 169 KISLPDDDFLEKVIVKMFADRQI 191 ++ D L ++ + I Sbjct: 152 VLNPFSADDLRALLKRAMTQDSI 174 >gi|90422127|ref|YP_530497.1| IstB-like ATP-binding protein [Rhodopseudomonas palustris BisB18] gi|90422520|ref|YP_530890.1| IstB-like ATP-binding protein [Rhodopseudomonas palustris BisB18] gi|90424553|ref|YP_532923.1| IstB-like ATP-binding protein [Rhodopseudomonas palustris BisB18] gi|90425963|ref|YP_534333.1| IstB-like ATP-binding protein [Rhodopseudomonas palustris BisB18] gi|90104141|gb|ABD86178.1| IstB-like ATP-binding protein [Rhodopseudomonas palustris BisB18] gi|90104534|gb|ABD86571.1| IstB-like ATP-binding protein [Rhodopseudomonas palustris BisB18] gi|90106567|gb|ABD88604.1| IstB-like ATP-binding protein [Rhodopseudomonas palustris BisB18] gi|90107977|gb|ABD90014.1| IstB-like ATP-binding protein [Rhodopseudomonas palustris BisB18] Length = 277 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 53/171 (30%), Gaps = 44/171 (25%) Query: 32 FPRCLGISRDDLLVHSAIEQAVRLIDSWP--------SWPSRVVIL--VGPSGSGKSCLA 81 P + D AV +I+ SW + L GP G GKS L Sbjct: 77 LPAGKSFATFDF-------AAVPMINKSQITALAAGGSWLDKGANLLAFGPPGVGKSHLG 129 Query: 82 NIWSDKSRSTRFSNIAKSLDSIL------------------IDTRKPVLLEDIDLLDFND 123 + + ++ +D ++L+D+ + + Sbjct: 130 AALGQALIENGYRVLFTRTTDMVQRLQAARRDLTLQNVMEKLDKYDLLILDDLSYVRKDQ 189 Query: 124 TQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 + LF +I S SLL+TA W PD KA TV I Sbjct: 190 AETSVLFELI-SARYERRSLLITANQPFGGWEEIFPD-----KAMTVAAID 234 >gi|21619335|gb|AAH31847.1| Nuclear VCP-like [Mus musculus] Length = 855 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 59/167 (35%), Gaps = 42/167 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P R V+L GP G GK+ LA+ + + A + D + + Sbjct: 296 PPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFDQAVSN 355 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151 V +++ID + QL + N++ L++ A P S Sbjct: 356 APCIVFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSL 415 Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDK 195 L +A V + +PD+ E+++ + R++ + + Sbjct: 416 DPALR------RAGRFDREVCLGIPDEAARERILQTLC--RKLRLPE 454 Score = 36.7 bits (84), Expect = 3.0, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 22/46 (47%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 ++L GP G GK+ LA +++S S L ++ + + + Sbjct: 617 ILLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAV 662 >gi|33468981|ref|NP_080447.1| nuclear valosin-containing protein-like [Mus musculus] gi|32699478|sp|Q9DBY8|NVL_MOUSE RecName: Full=Nuclear valosin-containing protein-like; Short=NVLp; Short=Nuclear VCP-like protein gi|12836020|dbj|BAB23464.1| unnamed protein product [Mus musculus] gi|74150277|dbj|BAE24409.1| unnamed protein product [Mus musculus] gi|148681184|gb|EDL13131.1| nuclear VCP-like [Mus musculus] Length = 855 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 59/167 (35%), Gaps = 42/167 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P R V+L GP G GK+ LA+ + + A + D + + Sbjct: 296 PPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFDQAVSN 355 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151 V +++ID + QL + N++ L++ A P S Sbjct: 356 APCIVFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSL 415 Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDK 195 L +A V + +PD+ E+++ + R++ + + Sbjct: 416 DPALR------RAGRFDREVCLGIPDEAARERILQTLC--RKLRLPE 454 Score = 36.7 bits (84), Expect = 3.0, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 22/46 (47%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 ++L GP G GK+ LA +++S S L ++ + + + Sbjct: 617 ILLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAV 662 >gi|126466018|ref|YP_001041127.1| AAA family ATPase, CDC48 subfamily protein [Staphylothermus marinus F1] gi|126014841|gb|ABN70219.1| AAA family ATPase, CDC48 subfamily [Staphylothermus marinus F1] Length = 733 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 33/215 (15%), Positives = 78/215 (36%), Gaps = 40/215 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTR-- 108 P + ++L GP G+GK+ LA +++ + + + L I + Sbjct: 221 PPKGILLYGPPGTGKTLLAKALANEIGAYFTAINGPEIMSKFYGESEQRLREIFEEAERN 280 Query: 109 --KPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + + +++ A P + Sbjct: 281 APAIIFIDEIDSIAPKREEVTGEVEKRVVAQLLALMDGLKERGKVIVIGATNRPDALD-- 338 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL--VFA 212 P L + ++I PD +++ R + +++ + + M Sbjct: 339 -PALRRPGRFDREIEIPPPDKRARREILAVH--TRNMPLEEDVDLDKIAEMTHGYTGADL 395 Query: 213 EKLVDKMDNLALSR-----GMGITRSLAAEVLKET 242 LV + AL R + +T+ + AE L++ Sbjct: 396 AALVKEAAMAALRRFIKEGKIDLTQPIPAEKLRDL 430 Score = 39.0 bits (90), Expect = 0.68, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 19/32 (59%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + ++L GP G+GK+ LA + +S + + Sbjct: 495 PPKGILLFGPPGTGKTLLAKAVATESGANFIA 526 >gi|48145579|emb|CAG33012.1| PSMC3 [Homo sapiens] Length = 404 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 184 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 243 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + + ++N + Q ++ + ++ A Sbjct: 244 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 303 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ +P+++ +++ R++ + + + R Sbjct: 304 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 357 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ ++ G T Sbjct: 358 GAQCKAVCVEAGMIALRRGAT 378 >gi|52425506|ref|YP_088643.1| recombination factor protein RarA [Mannheimia succiniciproducens MBEL55E] gi|52307558|gb|AAU38058.1| unknown [Mannheimia succiniciproducens MBEL55E] Length = 446 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 43/206 (20%), Positives = 77/206 (37%), Gaps = 41/206 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI-----------LIDTRKPVLL 113 +I GP G+GK+ LA I + K + R S + + I L D R + + Sbjct: 53 MIFWGPPGTGKTTLAEIIAHKINAEVERISAVTSGIKEIREAIERAKQNRLADRRTILFV 112 Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVK 169 +++ + + F HI + + + + T L SR A V Sbjct: 113 DEVHRFNKSQQDAFLPHI-----EDGTIIFIGATTENPSFELNSA---LLSR---ARVYI 161 Query: 170 ISLPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRM----ERSLVFAEKLVDK 218 + + + V+ + AD R + +++ + + + +L E +VD Sbjct: 162 LKSLTNQDILHVLEQALADKERGLGNENLDLEEGILELLADYVHGDARLALNCLELMVDM 221 Query: 219 MDNLALSRGMGITRSLAAEVLKETQQ 244 D +G I R+L EVL E Q Sbjct: 222 ADES--EKGKKIDRTLLTEVLGERQA 245 >gi|34540836|ref|NP_905315.1| recombination factor protein RarA [Porphyromonas gingivalis W83] gi|188995064|ref|YP_001929316.1| recombination factor protein RarA [Porphyromonas gingivalis ATCC 33277] gi|34397150|gb|AAQ66214.1| ATPase, AAA family [Porphyromonas gingivalis W83] gi|188594744|dbj|BAG33719.1| ATPase AAA family [Porphyromonas gingivalis ATCC 33277] Length = 434 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 53/144 (36%), Gaps = 29/144 (20%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS----------------TRFSNIAKSLDSILIDTR 108 +IL GP G GK+ LA I + + + ++I + ++ Sbjct: 41 PSMILWGPPGVGKTTLAEIIAHEVDAPFYTLSAVSSGVKEVREVIADIESNRGNLFDKGG 100 Query: 109 KPVL-LEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 + +L +++I + L + + L+ A T S+ V P L SR Sbjct: 101 RAILFIDEIHRFSKSQQDSLL----AAVERGIVTLIGATTENPSFEVIRP-LLSR---CQ 152 Query: 167 VVKISL-PDDDFLEKVIVKMFADR 189 V + D+D L ++ DR Sbjct: 153 VYVLKPQSDEDLL--LLAHRAIDR 174 >gi|18978254|ref|NP_579611.1| cell division protein CDC48 [Pyrococcus furiosus DSM 3638] gi|18894073|gb|AAL82006.1| cell division control protein 48, aaa family [Pyrococcus furiosus DSM 3638] Length = 796 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 23/162 (14%), Positives = 59/162 (36%), Gaps = 33/162 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106 P + V+L GP G+GK+ LA ++++ + + + + + Sbjct: 216 PPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFREAEEN 275 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + +++ A P + Sbjct: 276 APAIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKSRGKVIVIGATNRPDAID-- 333 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196 P L + ++I +PD ++++ R + I+ Sbjct: 334 -PALRRPGRFDREIEIGIPDKQGRKEILQ--IHTRGMPIEPD 372 Score = 44.0 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 37/217 (17%), Positives = 77/217 (35%), Gaps = 47/217 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRKP 110 P + ++L GP G+GK+ LA + +S++ + K + I R+ Sbjct: 550 PPKGILLYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQA 609 Query: 111 ----VLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL ++ I + +++ A P Sbjct: 610 APAIIFIDEIDAIAPTRGTDVNRVTDRIINQLLTEMDGIVENSGVVVIGATNRPDIIDPA 669 Query: 155 LPDLC----SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSL 209 L L RL + + PD+ ++ + R + + + + +R E Sbjct: 670 L--LRPGRFDRL-----ILVPAPDE--KARLEIFKVHTRGMPLADDVDLKELARRTEGYT 720 Query: 210 VFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 V + AL+ R+L ++KE + D Sbjct: 721 GADIAAVCR--EAALNAMR---RALEQGIIKEGMKAD 752 >gi|281340492|gb|EFB16076.1| hypothetical protein PANDA_010598 [Ailuropoda melanoleuca] Length = 439 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 219 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 278 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + + ++N + Q ++ + ++ A Sbjct: 279 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 338 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ +P+++ +++ R++ + + + R Sbjct: 339 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 392 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ ++ G T Sbjct: 393 GAQCKAVCVEAGMIALRRGAT 413 >gi|148695573|gb|EDL27520.1| proteasome (prosome, macropain) 26S subunit, ATPase 3, isoform CRA_a [Mus musculus] Length = 442 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 222 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 281 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + + ++N + Q ++ + ++ A Sbjct: 282 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 341 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ +P+++ +++ R++ + + + R Sbjct: 342 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 395 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ ++ G T Sbjct: 396 GAQCKAVCVEAGMIALRRGAT 416 >gi|109106421|ref|XP_001106497.1| PREDICTED: 26S protease regulatory subunit 6A isoform 5 [Macaca mulatta] gi|332836311|ref|XP_508413.3| PREDICTED: 26S protease regulatory subunit 6A [Pan troglodytes] Length = 439 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 219 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 278 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + + ++N + Q ++ + ++ A Sbjct: 279 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 338 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ +P+++ +++ R++ + + + R Sbjct: 339 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 392 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ ++ G T Sbjct: 393 GAQCKAVCVEAGMIALRRGAT 413 >gi|73982396|ref|XP_533187.2| PREDICTED: similar to 26S protease regulatory subunit 6A (TAT-binding protein 1) (TBP-1) (Proteasome subunit P50) isoform 1 [Canis familiaris] Length = 402 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 182 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 241 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + + ++N + Q ++ + ++ A Sbjct: 242 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 301 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ +P+++ +++ R++ + + + R Sbjct: 302 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 355 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ ++ G T Sbjct: 356 GAQCKAVCVEAGMIALRRGAT 376 >gi|26246173|ref|NP_752212.1| hypothetical protein c0268 [Escherichia coli CFT073] gi|26247398|ref|NP_753438.1| hypothetical protein c1529 [Escherichia coli CFT073] gi|26248357|ref|NP_754397.1| insertion sequence ATP-binding protein [Escherichia coli CFT073] gi|26249443|ref|NP_755483.1| hypothetical protein c3608 [Escherichia coli CFT073] gi|26250953|ref|NP_756993.1| hypothetical protein c5145 [Escherichia coli CFT073] gi|91206278|ref|YP_538632.1| insertion sequence ATP-binding protein [Escherichia coli UTI89] gi|191174353|ref|ZP_03035859.1| ISAfe9, transposition helper protein [Escherichia coli F11] gi|237702601|ref|ZP_04533082.1| insertion sequence ATP-binding protein [Escherichia sp. 3_2_53FAA] gi|256855281|ref|YP_003162525.1| putative IS element ATP-binding protein [Escherichia coli] gi|298378873|ref|ZP_06988755.1| insertion sequence ATP-binding protein [Escherichia coli FVEC1302] gi|300935023|ref|ZP_07150058.1| putative transposase [Escherichia coli MS 21-1] gi|300940794|ref|ZP_07155333.1| putative transposase [Escherichia coli MS 21-1] gi|26106570|gb|AAN78756.1|AE016755_256 Hypothetical protein c0268 [Escherichia coli CFT073] gi|26107799|gb|AAN79998.1|AE016759_272 Hypothetical protein c1529 [Escherichia coli CFT073] gi|26108761|gb|AAN80964.1|AE016762_217 Insertion sequence ATP-binding protein [Escherichia coli CFT073] gi|26109851|gb|AAN82056.1|AE016766_144 Hypothetical protein c3608 [Escherichia coli CFT073] gi|26111385|gb|AAN83567.1|AE016771_78 Hypothetical protein c5145 [Escherichia coli CFT073] gi|91075729|gb|ABE10609.1| insertion sequence ATP-binding protein [Escherichia coli UTI89] gi|190905376|gb|EDV65009.1| ISAfe9, transposition helper protein [Escherichia coli F11] gi|226903187|gb|EEH89446.1| insertion sequence ATP-binding protein [Escherichia sp. 3_2_53FAA] gi|256275493|gb|ACU68766.1| putative IS element ATP-binding protein [Escherichia coli] gi|281181643|dbj|BAI57972.1| conserved hypothetical protein [Escherichia coli SE15] gi|298280482|gb|EFI21985.1| insertion sequence ATP-binding protein [Escherichia coli FVEC1302] gi|300454447|gb|EFK17940.1| putative transposase [Escherichia coli MS 21-1] gi|300459724|gb|EFK23217.1| putative transposase [Escherichia coli MS 21-1] gi|307629880|gb|ADN74183.1| putative IS element ATP-binding protein [Escherichia coli UM146] gi|315614857|gb|EFU95495.1| istB-like ATP binding family protein [Escherichia coli 3431] gi|323954122|gb|EGB49916.1| IstB ATP binding protein [Escherichia coli H263] Length = 251 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 30/145 (20%), Positives = 50/145 (34%), Gaps = 25/145 (17%) Query: 32 FPRCLGISRDDLL-VHSAIEQAVRLIDSWPSW--PSRVVILVGPSGSGKSCLANIWSDKS 88 P +S D V R + W V+L G SG GKS LA D Sbjct: 66 LPVAKTLSEYDFSQVPELNGAQFRQLCETTDWVDAGENVLLFGASGLGKSHLAAAIVDGV 125 Query: 89 RSTRFSNIAKSLDSILIDTRKP------------------VLLEDIDLLDFNDTQ---LF 127 + S +L + RK ++++D+ + + + LF Sbjct: 126 VGQGYRARFYSAGELLQELRKARAQLKLNELLLKLDRYRVIVVDDLGYVKRDSAETGVLF 185 Query: 128 HIINSIHQYDSSLLMTARTFPVSWG 152 +I ++ SL++T+ WG Sbjct: 186 ELIAHRYERG-SLVITSNHPFSMWG 209 >gi|311247879|ref|XP_003122857.1| PREDICTED: 26S protease regulatory subunit 6A-like [Sus scrofa] Length = 439 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 219 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 278 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + + ++N + Q ++ + ++ A Sbjct: 279 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 338 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ +P+++ +++ R++ + + + R Sbjct: 339 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 392 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ ++ G T Sbjct: 393 GAQCKAVCVEAGMIALRRGAT 413 >gi|302870328|ref|YP_003838965.1| ATP-dependent metalloprotease FtsH [Micromonospora aurantiaca ATCC 27029] gi|315503395|ref|YP_004082282.1| ATP-dependent metalloprotease ftsh [Micromonospora sp. L5] gi|302573187|gb|ADL49389.1| ATP-dependent metalloprotease FtsH [Micromonospora aurantiaca ATCC 27029] gi|315410014|gb|ADU08131.1| ATP-dependent metalloprotease FtsH [Micromonospora sp. L5] Length = 670 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 32/210 (15%), Positives = 69/210 (32%), Gaps = 43/210 (20%) Query: 67 VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110 V+L GP G+GK+ LA + ++ S + + + Sbjct: 209 VLLFGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKSNAPAI 268 Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 V +++ID + D + L + ++ +L+ A P L Sbjct: 269 VFVDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDTKGGVILIAATNRPDILDPAL 328 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 L+ + + PD + + ++ + D L + +R A Sbjct: 329 ------LRPGRFDRQIPVDAPDMEGRKAILRVHAKGKPFTPDVDL-DAVARRTP-GFSGA 380 Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKET 242 L + ++ AL R++ + L+E+ Sbjct: 381 -DLANVINEAALLTARKEQRAITNDSLEES 409 >gi|213054513|gb|ACJ39432.1| cdc48 [Larimichthys crocea] Length = 806 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMGKLAGESESNLRKAFEEAEKN 296 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + ++++D + QL +++ + Q ++M A P S Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356 Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181 + +PD RL+ + L DD LE+V Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399 Score = 39.0 bits (90), Expect = 0.55, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566 >gi|54696316|gb|AAV38530.1| proteasome (prosome, macropain) 26S subunit, ATPase, 3 [synthetic construct] gi|61368868|gb|AAX43250.1| proteasome 26S subunit 3 [synthetic construct] Length = 405 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 184 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 243 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + + ++N + Q ++ + ++ A Sbjct: 244 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 303 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ +P+++ +++ R++ + + + R Sbjct: 304 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 357 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ ++ G T Sbjct: 358 GAQCKAVCVEAGMIALRRGAT 378 >gi|156548829|ref|XP_001605497.1| PREDICTED: similar to ENSANGP00000022801 [Nasonia vitripennis] Length = 833 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 49/121 (40%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 267 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 326 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + ++++D + QL +++ + Q ++M A P S Sbjct: 327 SPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKQSAHVIVMAATNRPNSIDGA 386 Query: 155 L 155 L Sbjct: 387 L 387 Score = 40.9 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 540 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDVFDKA 596 >gi|119578807|gb|EAW58403.1| valosin-containing protein, isoform CRA_a [Homo sapiens] Length = 632 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 192 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 251 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + ++++D + QL +++ + Q ++M A P S Sbjct: 252 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 311 Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181 + +PD RL+ + L DD LE+V Sbjct: 312 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 354 Score = 39.0 bits (90), Expect = 0.55, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 465 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 521 >gi|88812897|ref|ZP_01128141.1| ATPase, AAA family protein [Nitrococcus mobilis Nb-231] gi|88789819|gb|EAR20942.1| ATPase, AAA family protein [Nitrococcus mobilis Nb-231] Length = 435 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 67/183 (36%), Gaps = 29/183 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++ GP G+GK+ LA + ++ + + + ++ + + + R+ + T L Sbjct: 45 MVFWGPPGTGKTTLARLIAEATEAEFLA--LSAVMAGVKEIRQASATGQANRARGRQTIL 102 Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172 F H N Q D +++ T L SRL+ + Sbjct: 103 FVDEVHRFNKAQQDAFLPFIEDGTVVFIGATTENPSFELNNA---LLSRLR---TYVLRP 156 Query: 173 PDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 + L ++I D +Q+ + ++ + ++Q + A L++ +L+ + Sbjct: 157 LGEAALARIIDCALEDSERGLGTKQLALSEQARSLLIQAADGDARSALSLLEVAADLSAA 216 Query: 226 RGM 228 Sbjct: 217 EAR 219 >gi|330470513|ref|YP_004408256.1| ATP-dependent metalloprotease FtsH [Verrucosispora maris AB-18-032] gi|328813484|gb|AEB47656.1| ATP-dependent metalloprotease FtsH [Verrucosispora maris AB-18-032] Length = 671 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 33/210 (15%), Positives = 70/210 (33%), Gaps = 43/210 (20%) Query: 67 VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110 V+L GP G+GK+ LA + ++ S + + + Sbjct: 208 VLLFGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKANAPAI 267 Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 V +++ID + D + L + ++ +L+ A P L Sbjct: 268 VFVDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDVKGGVILIAATNRPDILDPAL 327 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 L+ + + PD + + ++ + D L + +R A Sbjct: 328 ------LRPGRFDRQIPVDAPDMEGRKAILRVHAKGKPFTPDVDL-DSVAKRTP-GFSGA 379 Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKET 242 L + ++ AL R+++ E L+E+ Sbjct: 380 -DLANVINEAALLTARKDQRAISNESLEES 408 >gi|194225438|ref|XP_001498145.2| PREDICTED: similar to valosin [Equus caballus] Length = 822 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 255 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 314 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + ++++D + QL +++ + Q ++M A P S Sbjct: 315 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 374 Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181 + +PD RL+ + L DD LE+V Sbjct: 375 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 417 Score = 39.0 bits (90), Expect = 0.55, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 528 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 584 >gi|57233987|ref|YP_182021.1| recombination factor protein RarA [Dehalococcoides ethenogenes 195] gi|57224435|gb|AAW39492.1| ATPase, AAA family [Dehalococcoides ethenogenes 195] Length = 457 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 53/137 (38%), Gaps = 19/137 (13%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLL 119 +I GP GSGK+ LANI + + + S L ++ + R+ + E + Sbjct: 58 PSLIFWGPPGSGKTTLANIIARRLDAHFSALSAVSAGVADLRRVVEEARERLKFERRRTI 117 Query: 120 DFNDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 F D H N + + +L+ A T S+ V L SR A V ++ Sbjct: 118 LFIDEI--HRFNKSQQDAILPYVEDGTVVLIGATTENPSFEVNSA-LLSR---AQVYVLN 171 Query: 172 LPDDDFLEKVIVKMFAD 188 + + ++ + D Sbjct: 172 PLSEKEISLILKRSLED 188 >gi|314936259|ref|ZP_07843606.1| ATPase, AAA family [Staphylococcus hominis subsp. hominis C80] gi|313654878|gb|EFS18623.1| ATPase, AAA family [Staphylococcus hominis subsp. hominis C80] Length = 422 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 32/200 (16%), Positives = 70/200 (35%), Gaps = 39/200 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117 +I GP G GK+ +A + + + ++ ++ + + +LL++I Sbjct: 43 MIFYGPPGIGKTSIAKAIAGSTEYKFRQLNAVTNTKKDMQMVVEEAKMSGQVILLLDEIH 102 Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 L D L H+ N +L+ T + P + SR + ++ Sbjct: 103 RLDKAKQDFLLPHLEN-----GKIILIGATTSNPYHAIN---PAIRSR---VQIFELYPL 151 Query: 174 DDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 D+ + + + + D Q ID+ Y + S ++ ++ LS Sbjct: 152 DEKDVYQALTRALNDDQNGLKSYQPKIDEDALKYFSTQ---SHGDVRSALNALELAVLSA 208 Query: 227 G-----MGITRSLAAEVLKE 241 +T A + L++ Sbjct: 209 KVSNNQRHVTLEDAKDCLQK 228 >gi|303234817|ref|ZP_07321442.1| putative Cell division protease FtsH [Finegoldia magna BVS033A4] gi|302493935|gb|EFL53716.1| putative Cell division protease FtsH [Finegoldia magna BVS033A4] Length = 628 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 38/217 (17%), Positives = 73/217 (33%), Gaps = 53/217 (24%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + +++ FS + + Sbjct: 199 VLLVGPPGTGKTLLAQAVAGEAKVPFFSMSGSEFVEMFVGLGASKVRDLFKQAAEKAPCI 258 Query: 111 VLLEDIDLL------------DFNDTQLFHIINS---IHQYDSSLLMTARTFP------- 148 V +++ID + D + L ++N +++ A P Sbjct: 259 VFIDEIDAIGKRRDTAGISGNDEREQTLNQLLNEMDGFSGNSGVVILAATNRPEILDPAL 318 Query: 149 -------VSWGVCLPDLCSRLK----AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 V LPDL R+ A +KI D + V + + + Sbjct: 319 TRPGRFDRQIPVELPDLQGRIDILKVHARKIKIEK--DMDYKAVALMTAGTSGAQLANIV 376 Query: 198 AAYIVQ--RMERSLVFAEKLVDKMDNLALSRGMGITR 232 ++ RM R++V E L++ ++ + + T Sbjct: 377 NEAALRAVRMGRNIVTQEDLIESVEVVIAGQQRKGTV 413 >gi|255714124|ref|XP_002553344.1| KLTH0D14586p [Lachancea thermotolerans] gi|238934724|emb|CAR22906.1| KLTH0D14586p [Lachancea thermotolerans] Length = 774 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 59/156 (37%), Gaps = 36/156 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P R ++L GP G+GK+ L + ++ + + S+ S + + L Sbjct: 273 PPRGILLHGPPGTGKTMLLRCVASEANAHVLTINGPSIVSKYLGETEAALRDIFNEARIY 332 Query: 113 ------LEDIDLLD----FND---------TQLFHIINSIHQYDSSLLMTARTFPVS--W 151 +++ID L +D L +++ + +++ A P + Sbjct: 333 QPSIIFIDEIDSLAPSRTSDDSGEVESRVVATLLTLMDGMGSTGRVVVVAATNRPNAVDM 392 Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 + P RL V+I +PD + +++K F Sbjct: 393 ALRRP---GRLD--QEVEIGIPDVESRHDILLKQFR 423 Score = 35.9 bits (82), Expect = 4.8, Method: Composition-based stats. Identities = 43/260 (16%), Positives = 78/260 (30%), Gaps = 70/260 (26%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL P SR L V + P V+ L GP G K+ A + Sbjct: 526 QLPLEAP--ESFSR--LSVSA---------------PKGVL-LYGPPGCSKTLTAKALAT 565 Query: 87 KSRSTRFS----------------NIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ----- 125 +S + I + + ++ID L + Sbjct: 566 ESGVNFLAVKGPEIFNKYVGESERAIREVFRKARAAAPSIIFFDEIDALSPDRDSGGSTS 625 Query: 126 -----LFHIINSIH---QYDSSLLMTARTFPVSWGVCLPDLC-SRLKAATVVKISLPDDD 176 L ++N I + + +++ A P L L RL + + PD + Sbjct: 626 AANHVLTSLLNEIDGVEELNGVVIVAATNRPDEIDAAL--LRPGRLD--RHIYVGPPDFE 681 Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF----------AEKLVDKMDNLALSR 226 +++ K D + L Q+ E +++ +D + R Sbjct: 682 ARLQILRKSTKDFHLIDSDALLQEFAQKTEGCSGAEVVLLCQEAGLAAIMENLDAEKVDR 741 Query: 227 G------MGITRSLAAEVLK 240 GI+R + E+L+ Sbjct: 742 KHFDKAIAGISRGIDKEMLE 761 >gi|18129321|emb|CAC83485.1| DnaA protein [Wolbachia endosymbiont of Onchocerca gibsoni] gi|18129323|emb|CAC83486.1| DnaA protein [Wolbachia endosymbiont of Onchocerca gutturosa] Length = 133 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 40/101 (39%), Gaps = 1/101 (0%) Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 P + SRL V I+ + ++ I++ + ++ + + Sbjct: 1 RSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQIKVEQMNIYVPDDVLEFLAKNI 60 Query: 206 ERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 + ++ E ++K+ + +L G +T A+E L + + + Sbjct: 61 KSNIRELEGALNKVVHTSLI-GRSMTVESASETLADLLRSN 100 >gi|313681270|ref|YP_004059008.1| recombination protein mgsa [Sulfuricurvum kujiense DSM 16994] gi|313154130|gb|ADR32808.1| Recombination protein MgsA [Sulfuricurvum kujiense DSM 16994] Length = 392 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 73/179 (40%), Gaps = 25/179 (13%) Query: 70 VGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSI--------LIDTRKPVLLEDIDLL 119 GP G GK+ LA I ++ F+ + ++ + T+ + ++++ L Sbjct: 44 YGPPGCGKTTLARIIAEVMGLPFYEFNATSLKIEQLRKIFDQYENSLTKPLIFIDEVHRL 103 Query: 120 DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179 N ++ + + +S L++ A T + + + SR + + ++ + L+ Sbjct: 104 AKNQQEVLLP---VMEKNSVLVIGASTENPYFSLTAA-MRSR---SLLFELYSITHEALD 156 Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238 ++V+ I +D++ Y++ S A ++ + ++ + IT L + Sbjct: 157 DLLVRTA----IEMDEEAREYLIAS---SGGDARAMLKLL-EVSCALNKPITLGLLKSL 207 >gi|219121314|ref|XP_002185883.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|209582732|gb|ACI65353.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 806 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 74/192 (38%), Gaps = 36/192 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R V+L GP GSGK+ +A ++++ + F SN+ K+ + + Sbjct: 234 PPRGVLLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 293 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + Q+ +++ + Q S +++ A P + Sbjct: 294 APAIIFIDEIDSIAPKREKTNGEVERRIVSQMLTLMDGLKQRASVVVIGATNRPNAID-- 351 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213 P L R + + I +PD++ +V R + +D+ + + R V A Sbjct: 352 -PALR-RFGRFDREIDIGVPDENGRLEVF--RIHTRNMKLDEDVEPEAIARETHGFVGA- 406 Query: 214 KLVDKMDNLALS 225 + A+ Sbjct: 407 DIAALCTEAAMQ 418 >gi|27544710|dbj|BAC55050.1| DnaA [Mycobacterium marinum] Length = 188 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 3/50 (6%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI 83 + D ++ ++ A + P+R + + G SG GK+ L + Sbjct: 121 RYTFDTFVIGASNRFAHAATLAIAEAPARAYNPLFIWGESGLGKTHLLHA 170 >gi|330930220|ref|XP_003302946.1| hypothetical protein PTT_14943 [Pyrenophora teres f. teres 0-1] gi|311321413|gb|EFQ88982.1| hypothetical protein PTT_14943 [Pyrenophora teres f. teres 0-1] Length = 744 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 41/196 (20%), Positives = 73/196 (37%), Gaps = 43/196 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRF--------------SNIAKSLDSILIDTRKPVL 112 V+L GP G GK+ LA + +S++ S A + + P + Sbjct: 519 VLLWGPPGCGKTLLAKAVAAESKANFISVKGPELLNKYVGESERALRQVFMRARSSVPCV 578 Query: 113 L--EDIDLLDFNDTQLFH-----IINSIHQYDSSL-------LMTARTFPVSWGVCLPDL 158 + +++D L + H ++N++ L L+ A P + L Sbjct: 579 IFFDELDALVPKRSTELHEASARVVNTLLTELDGLSMREGIYLIAATNRPEMIDEAM--L 636 Query: 159 C-SRLKAATVVKISLPDD--DFLEKVIVKMFADRQIFIDKKLAAYIVQRMER----SLVF 211 RL+ V++ P++ D L+ +I + R I LA + R++ S Sbjct: 637 RPGRLETLLYVELPKPEERVDILKALIRQ----RGGVISPDLAE--IGRLDACKDFSGAD 690 Query: 212 AEKLVDKMDNLALSRG 227 E L+ K AL R Sbjct: 691 LESLLRKAGQHALRRR 706 >gi|281355193|ref|ZP_06241687.1| AAA ATPase central domain protein [Victivallis vadensis ATCC BAA-548] gi|281318073|gb|EFB02093.1| AAA ATPase central domain protein [Victivallis vadensis ATCC BAA-548] Length = 438 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 57/162 (35%), Gaps = 33/162 (20%) Query: 60 PSWPSRVVI---------LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110 P P R +I L GP G GK+ LA I + ++ S F ++ I D RK Sbjct: 36 PDAPLRRMIDSGRLASFILWGPPGCGKTTLARIMATRT-SLHFVALSAVFSGIA-DLRKA 93 Query: 111 VLLEDIDLLDFNDTQLF----HIINSIHQYD-------SSLLM---TARTFPVSWGVCLP 156 + T LF H N Q ++++ T Sbjct: 94 FEVAGKRRSCGEGTLLFIDEIHRFNRAQQDGFLPYVENGTVILVGATTENPSFELNSA-- 151 Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVK--MFADRQIFIDKK 196 L SR V ++ + + L +++ + DR + + ++ Sbjct: 152 -LLSR---CKVFVMNPLNAEALAEIVRRAERILDRPLPVSEE 189 >gi|254283872|ref|ZP_04958840.1| ATPase, AAA family [gamma proteobacterium NOR51-B] gi|219680075|gb|EED36424.1| ATPase, AAA family [gamma proteobacterium NOR51-B] Length = 445 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 36/177 (20%), Positives = 65/177 (36%), Gaps = 21/177 (11%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 IL GP G+GK+ LA + + ++ + A + + + D R V + T L Sbjct: 57 FILWGPPGTGKTTLARLSAHQANAEFVQISA--VMAGVKDIRDVVARASQERGMGRATVL 114 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N + + + + A T S+ V L SR A V K+ Sbjct: 115 FVDEVHRFNKAQQDAFLPYVEDGTLIFIGATTENPSFEVNSA-LLSR---ARVYKLQPLS 170 Query: 175 DDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKLVD-KMDNLALSRGM 228 DD L +++ A + + + +V + A ++ +D + G Sbjct: 171 DDELSRIVRAALAAEFTDVTVSDDALSQLVASADGDARRALGQLELAVDLASAENGS 227 >gi|167745397|ref|ZP_02417524.1| hypothetical protein ANACAC_00088 [Anaerostipes caccae DSM 14662] gi|167655118|gb|EDR99247.1| hypothetical protein ANACAC_00088 [Anaerostipes caccae DSM 14662] Length = 439 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 62/170 (36%), Gaps = 24/170 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +I GP G+GK+ LA + + +++ A + + E + + T L Sbjct: 55 IIFYGPPGTGKTTLARVIAQTTQANFVQMNATTSGKKEMQEAVKEAKEALGMFQKK-TIL 113 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N + + +L+ A T + V L SR + V ++ + Sbjct: 114 FIDEIHRFNKAQQDFLLPFVEDGTIILIGATTENPYFEVNQA-LISR---SNVFELKSLE 169 Query: 175 DDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 + ++K++V+ D + I + ++ E A V+ Sbjct: 170 PEDIKKLLVRAVTDDEKGMGIYRAKITDEALDFLADMAEGDARSALNAVE 219 >gi|150403244|ref|YP_001330538.1| replication factor C large subunit [Methanococcus maripaludis C7] gi|166977385|sp|A6VIW1|RFCL_METM7 RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|150034274|gb|ABR66387.1| AAA ATPase central domain protein [Methanococcus maripaludis C7] Length = 482 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 40/221 (18%), Positives = 73/221 (33%), Gaps = 44/221 (19%) Query: 45 VHSAIEQAVRLIDSWPSWPSRVV--------ILVGPSGSGKSCLANIWSDKSRSTRFSNI 96 V + LI+ W + +L GP GSGK+ LA + Sbjct: 16 VAGHNKTKESLIE----WIESFINGQKQKPILLAGPPGSGKTTLAYAIAKDYAFDVIELN 71 Query: 97 A---------------KSLDSILIDTRKPVLLEDIDLLDFNDT--QLFHIINSIHQYDSS 139 A + L R ++L+++D L ND + II + ++ Sbjct: 72 ASDKRNKDVISQVVGTAATSKSLTGKRTLIVLDEVDGLSGNDDRGGVAEIIKVLKTAENP 131 Query: 140 LLMTART--FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 +++TA P + + ++ + + + V+ K+ ID+K+ Sbjct: 132 VILTANDVYKPALMTLR--------NSVNLINVGSVHTNSIPPVLRKIALKEGFEIDEKV 183 Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238 I L A D +L+ G I A E+ Sbjct: 184 IKTIASHAGGDLRAAIN-----DLQSLATGGSIEVEDAKEL 219 >gi|302349009|ref|YP_003816647.1| Cell division control protein 48, AAA family [Acidilobus saccharovorans 345-15] gi|302329421|gb|ADL19616.1| Cell division control protein 48, AAA family [Acidilobus saccharovorans 345-15] Length = 736 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 60/163 (36%), Gaps = 33/163 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109 P + ++L GP G+GK+ LA +++ + + + L + + ++ Sbjct: 226 PPKGILLYGPPGTGKTLLAKALANEIGAYFIAINGPEIMSKFYGESEERLREVFKEAQEN 285 Query: 110 ---PVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ I + +++ A P Sbjct: 286 APSIIFIDEIDSIAPKREEVTGEVEKRVVAQLLTLMDGIQERGKVIVIGATNRPEDLD-- 343 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L + ++I PD +++ R + +D + Sbjct: 344 -PALRRPGRFDREIEIRPPDKQGRLEILQVHT--RNMPLDSDV 383 Score = 37.1 bits (85), Expect = 2.6, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 19/32 (59%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + V+L GP G+GK+ LA + +S + + Sbjct: 502 PPKGVLLFGPPGTGKTMLAKAVATESGANFIA 533 >gi|73971212|ref|XP_866054.1| PREDICTED: similar to valosin-containing protein isoform 4 [Canis familiaris] Length = 761 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 192 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 251 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + ++++D + QL +++ + Q ++M A P S Sbjct: 252 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 311 Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181 + +PD RL+ + L DD LE+V Sbjct: 312 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 354 Score = 39.0 bits (90), Expect = 0.57, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 465 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 521 >gi|71663369|ref|XP_818678.1| transitional endoplasmic reticulum ATPase [Trypanosoma cruzi strain CL Brener] gi|70883943|gb|EAN96827.1| transitional endoplasmic reticulum ATPase, putative [Trypanosoma cruzi] Length = 778 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 62/164 (37%), Gaps = 33/164 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP GSGK+ +A ++++ + F N+ K+ + + Sbjct: 225 PPRGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESEGNLRKAFEEAEKN 284 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 V +++ID + QL +++ + ++M A P S Sbjct: 285 APSIVFIDEIDSIAPKREKAQGEVEKRIVSQLLTLMDGLKTRSQVIVMAATNRPNSID-- 342 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PDD +++ + ++ + Sbjct: 343 -PALR-RFGRFDREIDIGVPDDIGRLEILRIHTKNMKLDPGVDV 384 Score = 37.4 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 24/57 (42%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P + V+ GP G GK+ LA + + ++ S L ++ + + + D Sbjct: 498 PPKGVLFYGPPGCGKTLLAKAIATECQANFISIKGPELLTMWFGESEANVRDVFDKA 554 >gi|312134849|ref|YP_004002187.1| aaa atpase [Caldicellulosiruptor owensensis OL] gi|311774900|gb|ADQ04387.1| AAA ATPase [Caldicellulosiruptor owensensis OL] Length = 266 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 48/143 (33%), Gaps = 30/143 (20%) Query: 40 RDDLLVHSAIE----QAVRLIDSWPSWPSRV--VILVGPSGSGKSCLANIWSDKSRSTRF 93 ++ +V E A+ W + ++L G G+GKS LA ++K Sbjct: 77 FENFIVDDENEKYYKLALNYCRRWQEMKQKNIGLLLWGLPGTGKSYLAFCIANKLIEQLI 136 Query: 94 SNIAKSL-------------------DSILIDTRKPVLLEDIDLLDFND-----TQLFHI 129 IA S I+ R LL DL N+ +L+ + Sbjct: 137 PVIAISSIGFLNMLKQTYSNYGQEGEAEIIAMFRNASLLVLDDLGAENETGWAKEKLYEL 196 Query: 130 INSIHQYDSSLLMTARTFPVSWG 152 I+ ++ L++T P Sbjct: 197 IDFRYRDKKPLIVTTNLTPDQLK 219 >gi|295396093|ref|ZP_06806276.1| AAA family ATPase [Brevibacterium mcbrellneri ATCC 49030] gi|294971034|gb|EFG46926.1| AAA family ATPase [Brevibacterium mcbrellneri ATCC 49030] Length = 460 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 61/157 (38%), Gaps = 28/157 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRK---------PVL 112 VIL GP G GK+ +A+ S + K + ++ + R+ + Sbjct: 58 VILYGPPGVGKTTIAHAVSHAEGRRFVELSAITAGVKDVREVIENARRDREMRGLTTVLF 117 Query: 113 LEDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 L++I L + +L+ A T S+ V P L SR + V+++ Sbjct: 118 LDEIHRFSKAQQDALL----PAVENRLVVLVAATTENPSFSVIAP-LVSR---SLVLQLK 169 Query: 172 LPDDDFLEKVIVKMFAD-RQIF----IDKKLAAYIVQ 203 ++ L ++ + +D R + + ++ YIV Sbjct: 170 PLTEEHLRTLVTRAVSDPRGLAGQFELSEEALDYIVS 206 >gi|27544704|dbj|BAC55047.1| DnaA [Mycobacterium kansasii] Length = 192 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 3/50 (6%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI 83 + D ++ ++ A + P+R + + G SG GK+ L + Sbjct: 125 RYTFDTFVIGASNRFAHAATLAIAEAPARAYNPLFIWGESGLGKTHLLHA 174 >gi|326920433|ref|XP_003206478.1| PREDICTED: 26S protease regulatory subunit 6A-like, partial [Meleagris gallopavo] Length = 394 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 174 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 233 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + + ++N + Q ++ + ++ A Sbjct: 234 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 293 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ +P+++ +++ R++ + + + R Sbjct: 294 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 347 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ ++ G T Sbjct: 348 GAQCKAVCVEAGMIALRRGAT 368 >gi|210633878|ref|ZP_03297893.1| hypothetical protein COLSTE_01810 [Collinsella stercoris DSM 13279] gi|210159047|gb|EEA90018.1| hypothetical protein COLSTE_01810 [Collinsella stercoris DSM 13279] Length = 446 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 73/187 (39%), Gaps = 34/187 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS--------------LDSILIDTRKPVL 112 VIL GP+G+GK+ LA+I + ++S A + ++ D R + Sbjct: 61 VILYGPAGTGKTTLAHIIAAHTKSEFVEVSAVTGTVKDLRREIDEAKHRLMMFDRRTILF 120 Query: 113 LEDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++I L H + + +++ A T + V L SR + VV++ Sbjct: 121 IDEIHRFSRSQQDALLH----AVENRTVVMIGATTENPYFEVNAA-LLSR---SRVVELE 172 Query: 172 LPDDDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 D +E+++ + + + + ++ + I + A + L L+ Sbjct: 173 HLSDADVERLVRRALSAPEGLAGRYAVSDEVVSAICT------LAAGDGRSSLTTLELAS 226 Query: 227 GMGITRS 233 + +TR Sbjct: 227 EIALTRP 233 >gi|212542167|ref|XP_002151238.1| AAA family ATPase, putative [Penicillium marneffei ATCC 18224] gi|210066145|gb|EEA20238.1| AAA family ATPase, putative [Penicillium marneffei ATCC 18224] Length = 534 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 40/219 (18%), Positives = 80/219 (36%), Gaps = 33/219 (15%) Query: 44 LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS--------- 94 LV LI+ +IL G +G+GK+ +A + + S Sbjct: 142 LVGP-NGILRSLIEQDR---VPSMILWGGAGTGKTTIARVIACMVGSRFVEINSTTSGIA 197 Query: 95 ----NIAKSLDSILIDTRKPVLL-EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPV 149 A++ + + + RK +L ++I + ++ + + L+ A T Sbjct: 198 ECKKIFAEARNELGLTGRKTILFCDEIHRFSKTQQDV--LLGPV-ESGVVTLIAATTENP 254 Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF------IDKKLAAYIVQ 203 S+ V L SR + DD L ++ + A +D +L Y+ Sbjct: 255 SFKVQNA-LLSR---CRTFTLEKLTDDDLTSILKRALATEGSSYSPSELVDDELIRYLAT 310 Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + A L++ + LS G+T+++ + L +T Sbjct: 311 FSDGDARTALNLLEL--AMGLSNRPGMTKAVLKKSLTKT 347 >gi|55742322|ref|NP_001006786.1| proteasome (prosome, macropain) 26S subunit, ATPase, 3 [Xenopus (Silurana) tropicalis] gi|49522638|gb|AAH75596.1| proteasome (prosome, macropain) 26S subunit, ATPase, 3 [Xenopus (Silurana) tropicalis] Length = 423 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 203 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 262 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + + ++N + Q ++ + ++ A Sbjct: 263 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 322 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ +P+++ +++ R++ + + + R Sbjct: 323 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 376 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ ++ G T Sbjct: 377 GAQCKAVCVEAGMIALRRGAT 397 >gi|11095436|gb|AAG29873.1| valosin-containing protein [Homo sapiens] Length = 307 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 48/121 (39%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 175 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 234 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + ++++D + QL +++ + Q ++M A P S Sbjct: 235 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 294 Query: 155 L 155 L Sbjct: 295 L 295 >gi|15602122|ref|NP_245194.1| recombination factor protein RarA [Pasteurella multocida subsp. multocida str. Pm70] gi|12720486|gb|AAK02341.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 445 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 37/205 (18%), Positives = 83/205 (40%), Gaps = 39/205 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS-------------TRFSNIAKSLDSILIDTRKPVLL 113 +IL GP G+GK+ LA I + + + I ++ ++ L + R + + Sbjct: 53 MILWGPPGTGKTTLAEIIAHQIHADVERISAVTSGIKEIREAIERAKENRLAERRTILFV 112 Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR-----LKAAT 166 +++ + + F HI + + + + A T S+ + L SR LK+ + Sbjct: 113 DEVHRFNKSQQDAFLPHI-----EDGTIIFIGATTENPSFELNNA-LLSRAKVYILKSLS 166 Query: 167 VVKISLPDDDFLEKVIVKMFADRQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 +I+ + + ++ +R + +++ + + + + A ++ M + Sbjct: 167 TQEIT---EVLKQALLD---EERGLGKVRFVLEENVLECLAEYVNGDARLALNSLELMAD 220 Query: 222 LA--LSRGMGITRSLAAEVLKETQQ 244 +A G +T SL VL E Q Sbjct: 221 MAEETEAGKALTLSLLKNVLGERQA 245 >gi|294506355|ref|YP_003570413.1| ATPase [Salinibacter ruber M8] gi|294342683|emb|CBH23461.1| putative ATPase [Salinibacter ruber M8] Length = 341 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 49/143 (34%), Gaps = 31/143 (21%) Query: 46 HSAIEQAVRL---IDSWPSWPSRV--------------VILVGPSGSGKSCLANIWSDKS 88 A+ A + PSW R+ + LVGP+G+GK+ L + Sbjct: 25 AEALRVARAFVAELRRTPSWTERLRALLGVGDERLPQGLYLVGPAGTGKTHLLAATCNAL 84 Query: 89 RSTRFSNI------------AKSLDSILIDTRKPVLLEDIDLLD-FNDTQLFHIINSIHQ 135 R + L D L+++++ D N+ +L ++ ++ Sbjct: 85 MPERACAFLHSSTLFRQTEPPDAFAHRLADQYAVCCLDEVEIDDPANEMRLAGVMKTLAA 144 Query: 136 YDSSLLMTARTFPVS-WGVCLPD 157 D LL T+ P L D Sbjct: 145 RDVPLLATSNVAPEEYLATQLGD 167 >gi|41393119|ref|NP_958889.1| transitional endoplasmic reticulum ATPase [Danio rerio] gi|82188427|sp|Q7ZU99|TERA_DANRE RecName: Full=Transitional endoplasmic reticulum ATPase; Short=TER ATPase; AltName: Full=Protein CDC48; AltName: Full=Valosin-containing protein; Short=VCP gi|29791670|gb|AAH50488.1| Valosin containing protein [Danio rerio] gi|45501133|gb|AAH67384.1| Valosin containing protein [Danio rerio] gi|46403223|gb|AAS92631.1| valosin-containing protein [Danio rerio] gi|122891315|emb|CAM13143.1| valosin containing protein [Danio rerio] Length = 806 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + ++++D + QL +++ + Q ++M A P S Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356 Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181 + +PD RL+ + L DD LE+V Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399 Score = 39.0 bits (90), Expect = 0.58, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566 >gi|327288855|ref|XP_003229140.1| PREDICTED: transitional endoplasmic reticulum ATPase-like [Anolis carolinensis] Length = 807 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + ++++D + QL +++ + Q ++M A P S Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356 Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181 + +PD RL+ + L DD LE+V Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLSDDVDLEQV 399 Score = 39.0 bits (90), Expect = 0.58, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566 >gi|325066414|ref|ZP_08125087.1| recombination factor protein RarA [Actinomyces oris K20] Length = 400 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 62/172 (36%), Gaps = 24/172 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ +A + +D++ F ++ + + D RK T L Sbjct: 9 IILWGPPGCGKTTIARLLADRTG-LVFEQVSATFSGVA-DLRKVFAAAARRREIGQGTLL 66 Query: 127 F----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISL 172 F H N + + +L+ T L SR V+ + Sbjct: 67 FVDEIHRFNRAQQDSFLPYVEDGTVVLVGATTENPSFELNGA---LLSR---CQVMVLRR 120 Query: 173 PDDDFLEKVIVKMFAD--RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 D+ L +++ + + R + + + ++ + + +V+++ Sbjct: 121 LDEAALTELLARAESLMGRSLALTEDARTALLSMADGDGRYLLGMVEQVLAA 172 >gi|26326751|dbj|BAC27119.1| unnamed protein product [Mus musculus] Length = 806 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + ++++D + QL +++ + Q ++M A P S Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356 Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181 + +PD RL+ + L DD LE+V Sbjct: 357 LRQFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399 Score = 39.0 bits (90), Expect = 0.58, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566 >gi|326527541|dbj|BAK08045.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 813 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 68/175 (38%), Gaps = 38/175 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP GSGK+ +A ++++ + F SN+ K+ + + Sbjct: 245 PPKGILLFGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 304 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + ++M A P S Sbjct: 305 APSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSID-- 362 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 P L R + + I +PD+ +V+ + + + + + ++ + R Sbjct: 363 -PALR-RFGRFDREIDIGVPDEVGRLEVL--RIHTKNMKLAEDVE---LEHISRD 410 Score = 39.4 bits (91), Expect = 0.42, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 518 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARG 576 >gi|27544734|dbj|BAC55062.1| DnaA [Mycobacterium ulcerans] Length = 188 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 3/50 (6%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI 83 + D ++ ++ A + P+R + + G SG GK+ L + Sbjct: 121 RYTFDTFVIGASNRFAHAATLAIAEAPARAYNPLFIWGESGLGKTHLLHA 170 >gi|322820539|gb|EFZ27127.1| transitional endoplasmic reticulum ATPase, putative [Trypanosoma cruzi] Length = 778 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 62/164 (37%), Gaps = 33/164 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP GSGK+ +A ++++ + F N+ K+ + + Sbjct: 225 PPRGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESEGNLRKAFEEAEKN 284 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 V +++ID + QL +++ + ++M A P S Sbjct: 285 APSIVFIDEIDSIAPKREKAQGEVEKRIVSQLLTLMDGLKTRSQVIVMAATNRPNSID-- 342 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PDD +++ + ++ + Sbjct: 343 -PALR-RFGRFDREIDIGVPDDIGRLEILRIHTKNMKLDPGVDV 384 Score = 37.4 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 24/57 (42%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P + V+ GP G GK+ LA + + ++ S L ++ + + + D Sbjct: 498 PPKGVLFYGPPGCGKTLLAKAIATECQANFISIKGPELLTMWFGESEANVRDVFDKA 554 >gi|309792400|ref|ZP_07686867.1| IstB domain protein ATP-binding protein [Oscillochloris trichoides DG6] gi|308225555|gb|EFO79316.1| IstB domain protein ATP-binding protein [Oscillochloris trichoides DG6] Length = 234 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 53/142 (37%), Gaps = 31/142 (21%) Query: 45 VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS---------------- 88 V A +AV + W +IL G G GK+ LA +++ Sbjct: 56 VARAFSRAVEFARNPRGW----LILYGGYGCGKTHLAAAIANEVLKMNTEVLFTVVPDLL 111 Query: 89 ---RSTRFSNIAKSLDSILIDTRKP--VLLEDI---DLLDFNDTQLFHIINSIHQYDSSL 140 RST + + D R ++L+D+ + + +L+ IIN + Y Sbjct: 112 DHLRSTFGPHSEVAYDERFDQVRGAKLLILDDLGTENATPWAREKLYQIINHRYNYALPT 171 Query: 141 LMTARTFPVSWGVCLPDLCSRL 162 ++T+ P P + SR+ Sbjct: 172 VITSNREPKDID---PRILSRM 190 >gi|154686894|ref|YP_001422055.1| recombination factor protein RarA [Bacillus amyloliquefaciens FZB42] gi|154352745|gb|ABS74824.1| YrvN [Bacillus amyloliquefaciens FZB42] Length = 422 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 30/197 (15%), Positives = 69/197 (35%), Gaps = 32/197 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKS-------RSTRFS--NIAKSLDSILIDTRKPVLLEDID 117 +IL GP G GK+ +A + + + + ++ + + + ++L+++ Sbjct: 41 MILYGPPGIGKTSIATAIAGSTSIAFRKLNAVIHNKKDMEIVVQEAKMSGQVILILDEVH 100 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 LD + +L+ A T + P + SR + ++ D Sbjct: 101 RLDKGKQDFLLPY---LENGMIILIGATTANPYHAIN-PAIRSR---TQIFELEPLTPDL 153 Query: 178 LEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM-- 228 +++ + + D R + +D + Q ++ ++ LS Sbjct: 154 IKQALERALTDEHRGLGSYSVSVDDDAMDHFAQGCG---GDVRSALNALELAVLSTKESS 210 Query: 229 ----GITRSLAAEVLKE 241 ITR A E L++ Sbjct: 211 DGTIRITRETAEECLQK 227 >gi|126332736|ref|XP_001370525.1| PREDICTED: hypothetical protein [Monodelphis domestica] Length = 531 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 311 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 370 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + + ++N + Q ++ + ++ A Sbjct: 371 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 430 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ +P+++ +++ R++ + + + R Sbjct: 431 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 484 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ ++ G T Sbjct: 485 GAQCKAVCVEAGMIALRRGAT 505 >gi|57234675|ref|YP_181282.1| ATP-binding protein [Dehalococcoides ethenogenes 195] gi|57225123|gb|AAW40180.1| ATP-binding protein, DnaC family [Dehalococcoides ethenogenes 195] Length = 426 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 57/156 (36%), Gaps = 31/156 (19%) Query: 50 EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID--- 106 QA ++ S P+ ++ GPSG+GK+ LA ++K + + K ++ D Sbjct: 66 SQAYNAALNFASNPAGWLVFSGPSGAGKTHLAAAIANKRLAMGQPVLYKRASELIDDLKK 125 Query: 107 ------------------TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTAR 145 ++++D+ + +D +L ++ + ++T Sbjct: 126 SFEPDSEAAYSQSFDILKNAPLLIIDDLTVQSGSDWSKEKLDQLLTYRFSQELPTIITLS 185 Query: 146 TFPVSWGVCLPDLCSRLKAATVVKISL----PDDDF 177 T + SRL +V +I P+D Sbjct: 186 TPINELDSRI---QSRLLDKSVSRIYPVASNPEDTL 218 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 25/152 (16%), Positives = 51/152 (33%), Gaps = 30/152 (19%) Query: 50 EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL----- 104 E A L + P ++ G +G GK+ LA+ ++ + + L Sbjct: 253 EAAYNLALEFSRNPESWLVFQGETGCGKTHLASAIVNERYRQGKPAMFVVVPEFLDHLRS 312 Query: 105 ----------------IDTRKPVLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTAR 145 + K ++L+D + +L+ +IN + ++T R Sbjct: 313 TFSPESKTSYDQMFDAVKNAKLLVLDDFGEQSSTPWAQEKLYQVINYRYNRRLPTVITTR 372 Query: 146 TFPVSWGVCLPDLCSRL---KAATVVKISLPD 174 V + SR + + V I+ P+ Sbjct: 373 CPLSEIEVAI---SSRFVDPQISMVFNITAPN 401 >gi|326917076|ref|XP_003204830.1| PREDICTED: ATPase WRNIP1-like [Meleagris gallopavo] Length = 440 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 55/148 (37%), Gaps = 28/148 (18%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA+I ++ S+ + S S + + D+ N+ Sbjct: 36 PSIILWGPPGCGKTTLAHIIANSSKKKGMRFVTLSATSAKTND-----VRDVISQAQNEK 90 Query: 125 QLF-----------HIINSIHQY--------DSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 +LF H N Q + L+ A T S+ V L SR Sbjct: 91 RLFKRKTILFIDEIHRFNKSQQDTFLPHVECGTVTLIGATTENPSFQVNAA-LLSR---C 146 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFI 193 V+ + + +E ++++ + + Sbjct: 147 RVIVLEKLSVEAMEAILLRAVKSLGVQV 174 >gi|312865956|ref|ZP_07726177.1| replication-associated recombination protein A [Streptococcus downei F0415] gi|311098360|gb|EFQ56583.1| replication-associated recombination protein A [Streptococcus downei F0415] Length = 449 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 47/251 (18%), Positives = 82/251 (32%), Gaps = 49/251 (19%) Query: 9 SFFVPDKQKNDQ--PKNKEEQLFFSFPRCLGISRDDL-----LVHSAIEQAVRLIDSWPS 61 S F D QK+ + + + L DD LV +I+ Sbjct: 5 SLFDADMQKSAPLASRMRPQSL------------DDFVGQEHLVGQGKFL-REMIEKDQ- 50 Query: 62 WPSRVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKP--------- 110 +I GP G GK+ LA I + K+ + FS + + I + Sbjct: 51 --VSSMIFWGPPGVGKTTLAEIIAKKTNAKFITFSAVMNGIKEIRTIMNEAEENRSFGEK 108 Query: 111 --VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168 V +++I + F + S +L+ A T S+ V L SR A V Sbjct: 109 TIVFIDEIHRFNKAQQDAFLPY---VEKGSIILIGATTENPSFEVNSA-LLSR---ARVF 161 Query: 169 KISLPD--D--DFLEKVIVKMFADRQI--FIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 + D + L++V+ A I I +L + + A ++ + Sbjct: 162 VLKPLAKGDILNLLKRVLRSEDAFPGIMVEISDELLERLAAYADGDARTALNTLEMLVLN 221 Query: 223 ALSRGMGITRS 233 + +T Sbjct: 222 SDKEDDKVTIR 232 >gi|74139564|dbj|BAE40919.1| unnamed protein product [Mus musculus] Length = 806 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + ++++D + QL +++ + Q ++M A P S Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356 Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181 + +PD RL+ + L DD LE+V Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399 Score = 39.0 bits (90), Expect = 0.58, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566 >gi|45357885|ref|NP_987442.1| replication factor C large subunit [Methanococcus maripaludis S2] gi|50400880|sp|Q6M0E9|RFCL_METMP RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|45047445|emb|CAF29878.1| replication factor C, large subunit [Methanococcus maripaludis S2] Length = 486 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 38/221 (17%), Positives = 76/221 (34%), Gaps = 44/221 (19%) Query: 45 VHSAIEQAVRLIDSWPSWPSRVV--------ILVGPSGSGKSCLANIWSDKSRSTRFSNI 96 V + LI+ W ++ +L GP GSGK+ LA ++ Sbjct: 16 VAGHNKTKQALIE----WIESIIGGQNQKPILLAGPPGSGKTTLAYAIANDYAFDVIELN 71 Query: 97 A---------------KSLDSILIDTRKPVLLEDIDLLDFNDT--QLFHIINSIHQYDSS 139 A + L R ++L+++D L ND + II + ++ Sbjct: 72 ASDKRNKDVISQVVGTAATSKSLTGRRTLIVLDEVDGLSGNDDRGGVAEIIKVLKTAENP 131 Query: 140 LLMTART--FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 +++TA P + + ++ + + + V+ ++ ID+K+ Sbjct: 132 VILTANDVYKPALMTLR--------NSVNLINVGSVHTNSIPPVLRRIALKEGFEIDEKI 183 Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238 I S ++ D +L+ G I A E+ Sbjct: 184 IKMIASH---SGGDLRAAIN--DLQSLATGGSIEIEDAKEL 219 >gi|34740143|dbj|BAC87740.1| CDC48 [Danio rerio] Length = 806 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + ++++D + QL +++ + Q ++M A P S Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356 Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181 + +PD RL+ + L DD LE+V Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399 Score = 39.0 bits (90), Expect = 0.59, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566 >gi|110834153|ref|YP_693012.1| recombination factor protein RarA [Alcanivorax borkumensis SK2] gi|110647264|emb|CAL16740.1| ATPase AAA family related to the helicase subunit of the Holliday junction resolvase [Alcanivorax borkumensis SK2] Length = 443 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 39/195 (20%), Positives = 68/195 (34%), Gaps = 25/195 (12%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G+GK+ LA I + + ++ S + D R V I L T L Sbjct: 53 MILWGPPGTGKTTLALIMAQTVDAAFI--TLSAVLSGVKDIRAAVEQAQILLGQGRRTVL 110 Query: 127 F----HIINSIHQYD----------SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 F H N Q + + T L SR A V ++ Sbjct: 111 FVDEVHRFNKAQQDAFLPHVEEGTITFIGATTENPSFELNNA---LLSR---ARVYRLRA 164 Query: 173 PDDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229 + L ++V+ D + +D + ++ + +++ +LA Sbjct: 165 LAPEDLSGLLVRALHDPALNGMQLDAQATELLLNYADGDARRLLNMLEVAADLADVDVPN 224 Query: 230 ITRSLAAEVLKETQQ 244 I L EVL++ + Sbjct: 225 IGADLMREVLRDAVR 239 >gi|26350783|dbj|BAC39028.1| unnamed protein product [Mus musculus] Length = 723 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 154 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 213 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + ++++D + QL +++ + Q ++M A P S Sbjct: 214 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 273 Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181 + +PD RL+ + L DD LE+V Sbjct: 274 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 316 Score = 39.0 bits (90), Expect = 0.58, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 427 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 483 >gi|77735541|ref|NP_001029466.1| transitional endoplasmic reticulum ATPase [Bos taurus] gi|122140828|sp|Q3ZBT1|TERA_BOVIN RecName: Full=Transitional endoplasmic reticulum ATPase; Short=TER ATPase; AltName: Full=15S Mg(2+)-ATPase p97 subunit; AltName: Full=Valosin-containing protein; Short=VCP gi|73586667|gb|AAI03126.1| Valosin-containing protein [Bos taurus] Length = 806 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + ++++D + QL +++ + Q ++M A P S Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356 Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181 + +PD RL+ + L DD LE+V Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399 Score = 39.0 bits (90), Expect = 0.58, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566 >gi|313893197|ref|ZP_07826774.1| ATPase, AAA family [Veillonella sp. oral taxon 158 str. F0412] gi|313442550|gb|EFR60965.1| ATPase, AAA family [Veillonella sp. oral taxon 158 str. F0412] Length = 433 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 60/157 (38%), Gaps = 30/157 (19%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 ++ GP G+GK+ LA I + S S + A + + T ++ED + Sbjct: 51 PSMLFYGPCGTGKTTLAGIIAKMSNSHFVNLNATNAGIGELRT----IIEDARKRVRSLQ 106 Query: 125 Q---LF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 Q LF H N + + +L+ A T + V P L SRL+ ++ Sbjct: 107 QRTILFLDEIHRFNKSQQDVLLPCVEDGTIILIGATTENPFFEVNRP-LLSRLR---LIT 162 Query: 170 ISLPDDDFLEKVIVKMFAD-------RQIFIDKKLAA 199 + + +++ + D R++ + ++ Sbjct: 163 LEALTPKAIGQILRRAITDEEVGLGKRRLQVTDEVLE 199 >gi|242008814|ref|XP_002425193.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212508909|gb|EEB12455.1| conserved hypothetical protein [Pediculus humanus corporis] Length = 804 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 38/202 (18%), Positives = 77/202 (38%), Gaps = 54/202 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 235 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKN 294 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + ++++D + QL +++ + + ++M A P S V Sbjct: 295 SPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNSIDVA 354 Query: 155 L--------------PDLCSRLK--AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198 L PD RL+ + L DD LE++ A+ + LA Sbjct: 355 LRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLADDVDLEQI----AAETHGHVGADLA 410 Query: 199 AYIVQRMERSLVFAEKLVDKMD 220 + S +++ +KMD Sbjct: 411 SLC------SESALQQIREKMD 426 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 508 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDVFDKA 564 >gi|73971210|ref|XP_852626.1| PREDICTED: similar to valosin-containing protein isoform 3 [Canis familiaris] gi|301787635|ref|XP_002929233.1| PREDICTED: transitional endoplasmic reticulum ATPase-like [Ailuropoda melanoleuca] gi|296484691|gb|DAA26806.1| transitional endoplasmic reticulum ATPase [Bos taurus] gi|225450|prf||1303334A valosin precursor Length = 806 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + ++++D + QL +++ + Q ++M A P S Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356 Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181 + +PD RL+ + L DD LE+V Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399 Score = 39.0 bits (90), Expect = 0.59, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566 >gi|296190199|ref|XP_002743098.1| PREDICTED: transitional endoplasmic reticulum ATPase-like [Callithrix jacchus] Length = 806 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + ++++D + QL +++ + Q ++M A P S Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356 Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181 + +PD RL+ + L DD LE+V Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399 Score = 39.0 bits (90), Expect = 0.58, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566 >gi|291242207|ref|XP_002740980.1| PREDICTED: valosin-containing protein-like [Saccoglossus kowalevskii] Length = 809 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 49/121 (40%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + ++++D + QL +++ + Q ++M A P S Sbjct: 297 SPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRSHVIVMAATNRPNSIDTA 356 Query: 155 L 155 L Sbjct: 357 L 357 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 510 PSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKA 566 >gi|238053995|ref|NP_001153918.1| proteasome 26S subunit ATPase 3 [Oryzias latipes] gi|226088560|dbj|BAH37025.1| proteasome 26S subunit ATPase 3 [Oryzias latipes] Length = 427 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 73/201 (36%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 207 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 266 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + + ++N + Q + + ++ A Sbjct: 267 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNMQVKVIAATNRVDIL 326 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ +P+++ +++ R++ + + + R Sbjct: 327 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 380 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ ++ G T Sbjct: 381 GAQCKAVCVEAGMIALRRGAT 401 >gi|149609398|ref|XP_001520419.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus] Length = 805 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 236 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 295 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + ++++D + QL +++ + Q ++M A P S Sbjct: 296 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 355 Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181 + +PD RL+ + L DD LE+V Sbjct: 356 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 398 Score = 39.0 bits (90), Expect = 0.58, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 509 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 565 >gi|111305821|gb|AAI21795.1| Valosin-containing protein [Homo sapiens] Length = 806 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + ++++D + QL +++ + Q ++M A P S Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356 Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181 + +PD RL+ + L DD LE+V Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399 Score = 39.0 bits (90), Expect = 0.58, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566 >gi|73971232|ref|XP_866203.1| PREDICTED: similar to Transitional endoplasmic reticulum ATPase (TER ATPase) (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing protein) (VCP) isoform 13 [Canis familiaris] Length = 810 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + ++++D + QL +++ + Q ++M A P S Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356 Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181 + +PD RL+ + L DD LE+V Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399 Score = 39.0 bits (90), Expect = 0.59, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566 >gi|73971230|ref|XP_866191.1| PREDICTED: similar to Transitional endoplasmic reticulum ATPase (TER ATPase) (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing protein) (VCP) isoform 12 [Canis familiaris] Length = 819 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + ++++D + QL +++ + Q ++M A P S Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356 Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181 + +PD RL+ + L DD LE+V Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399 Score = 39.0 bits (90), Expect = 0.58, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566 >gi|74198702|dbj|BAE39824.1| unnamed protein product [Mus musculus] Length = 806 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + ++++D + QL +++ + Q ++M A P S Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356 Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181 + +PD RL+ + L DD LE+V Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399 Score = 39.0 bits (90), Expect = 0.58, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566 >gi|17865351|ref|NP_446316.1| transitional endoplasmic reticulum ATPase [Rattus norvegicus] gi|1174637|sp|P46462|TERA_RAT RecName: Full=Transitional endoplasmic reticulum ATPase; Short=TER ATPase; AltName: Full=15S Mg(2+)-ATPase p97 subunit; AltName: Full=Valosin-containing protein; Short=VCP gi|641973|gb|AAC52154.1| transitional endoplasmic reticulum ATPase [Rattus norvegicus] gi|38014694|gb|AAH60518.1| Valosin-containing protein [Rattus norvegicus] gi|149045717|gb|EDL98717.1| valosin-containing protein, isoform CRA_b [Rattus norvegicus] gi|1093322|prf||2103265A transitional endoplasmic reticulum ATPase Length = 806 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + ++++D + QL +++ + Q ++M A P S Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356 Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181 + +PD RL+ + L DD LE+V Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399 Score = 39.0 bits (90), Expect = 0.58, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566 >gi|317473057|ref|ZP_07932357.1| ATPase [Anaerostipes sp. 3_2_56FAA] gi|316899486|gb|EFV21500.1| ATPase [Anaerostipes sp. 3_2_56FAA] Length = 439 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 62/170 (36%), Gaps = 24/170 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +I GP G+GK+ LA + + +++ A + + E + + T L Sbjct: 55 IIFYGPPGTGKTTLARVIAQTTQANFVQMNATTSGKKEMQEAVKEAKEALGMFQKK-TIL 113 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N + + +L+ A T + V L SR + V ++ + Sbjct: 114 FIDEIHRFNKAQQDFLLPFVEDGTIILIGATTENPYFEVNQA-LISR---SNVFELKSLE 169 Query: 175 DDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 + ++K++V+ D + I + ++ E A V+ Sbjct: 170 PEDIKKLLVRAVTDDEKGMGIYRAKITDEALDFLADMAEGDARSALNAVE 219 >gi|218282978|ref|ZP_03489080.1| hypothetical protein EUBIFOR_01666 [Eubacterium biforme DSM 3989] gi|218216172|gb|EEC89710.1| hypothetical protein EUBIFOR_01666 [Eubacterium biforme DSM 3989] Length = 453 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 61/163 (37%), Gaps = 27/163 (16%) Query: 44 LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLD 101 LV ++I+ +I GP G GK+ LA I + +++S FS + + Sbjct: 34 LVAKGNLL-WQMIEHDQ---VTSMIFWGPPGVGKTTLARIIAHQTKSYFVDFSAVTSGIK 89 Query: 102 SILIDTRKPVLLEDIDLLDFNDTQLF----HIINSIH--------QYDSSLLMTARTFPV 149 I ++ D T LF H N + S +L+ A T Sbjct: 90 EIKEVMKQA----DTRRALGQKTILFVDEIHRFNKAQQDAFLPYVEKGSIILIGATTENP 145 Query: 150 SWGVCLPDLCSRLKAATVVKISLPD-DDFLEKVIVKMFADRQI 191 S+ + L SR V ++ + DD + +I + + + + Sbjct: 146 SFEINSA-LLSR---CRVFVLNSLNTDDLKDLIIRAISSSKGL 184 >gi|156086698|ref|XP_001610758.1| cell division control protein 48 [Babesia bovis T2Bo] gi|154798011|gb|EDO07190.1| cell division control protein 48, putative [Babesia bovis] Length = 804 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 26/164 (15%), Positives = 61/164 (37%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R V+L GP GSGK+ +A ++++ + F SN+ ++ + Sbjct: 247 PPRGVLLYGPPGSGKTLIARAVANETGAYFFLINGPEVMSKMAGEAESNLRRAFAEAEKN 306 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + ++++D + QL +++ + +++ A Sbjct: 307 APAIIFIDEVDSIAPKREKTNGEVERRVVSQLLTLMDGLKGRGQVVVIAAT---NRQNSI 363 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PDD +++ R + + ++ Sbjct: 364 DPALR-RFGRFDKEIDIGVPDDTGRLEIL--KIHTRNMKLAPEV 404 Score = 39.0 bits (90), Expect = 0.67, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 24/57 (42%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA + + + S L ++ + + E D Sbjct: 520 PSRGVLFYGPPGCGKTLLAKAVASECSANFISIKGPELLTMWFGESEANVREVFDKA 576 >gi|124021978|ref|YP_001016285.1| recombination factor protein RarA/unknown domain fusion protein [Prochlorococcus marinus str. MIT 9303] gi|123962264|gb|ABM77020.1| putative ATPase, AAA family protein [Prochlorococcus marinus str. MIT 9303] Length = 735 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 39/201 (19%), Positives = 77/201 (38%), Gaps = 35/201 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G GK+ LA I + +R+ S A + + ++ T L Sbjct: 57 LLLHGPPGVGKTTLARIIAGHTRANFSSLNAVLAGVKELRQEVDAAKQRLERHGLR-TIL 115 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H NS + + L+ A T + V L SR + + ++ + Sbjct: 116 FIDEVHRFNSAQQDALLPWVENGTVTLIGATTENPYFEVNKA-LVSR---SRLFRLQALE 171 Query: 175 DDFLEKVI-------VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 ++ L +++ + + DRQ+ + A ++V A L++ + LA+ Sbjct: 172 NEDLHRLLKHALQDCERGYGDRQVMLSTAAANHLVNVAN---GDARSLLNAL-ELAVESS 227 Query: 228 MG-------ITRSLAAEVLKE 241 I ++A E ++E Sbjct: 228 RPNEQGSIHINLAIAEESIQE 248 >gi|74185161|dbj|BAE39181.1| unnamed protein product [Mus musculus] Length = 502 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 282 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 341 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + + ++N + Q ++ + ++ A Sbjct: 342 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 401 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ +P+++ +++ R++ + + + R Sbjct: 402 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 455 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ ++ G T Sbjct: 456 GAQCKAVCVEAGMIALRRGAT 476 >gi|56963320|ref|YP_175051.1| Holliday junction DNA helicase RuvB [Bacillus clausii KSM-K16] gi|68715275|sp|Q5WHR5|RUVB_BACSK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|56909563|dbj|BAD64090.1| holliday junction DNA helicase RuvB [Bacillus clausii KSM-K16] Length = 333 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 66/190 (34%), Gaps = 29/190 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G GK+ LA I + + + +++ LE D+L ++ Sbjct: 56 VLLYGPPGLGKTTLAAIIAAEMGGELRTTSGPAIERSGDLAAILTALEPGDVLFIDEI-- 113 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCL-------PDLCS-RLKAATVVKISLPDDDFL 178 H +N + +L P CL P S RL + Sbjct: 114 -HRLNRTVEE---VLY-----PAMEDFCLDIVIGKGPTARSVRLDLPPFTLVGA---TTR 161 Query: 179 EKVIVKMFADRQIFIDKKLAAY-----IVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233 ++ DR + + Y + Q +ERS + ++ L L+R T Sbjct: 162 AGMLSSPLRDRFGVMAR--LEYYKPEELAQIVERSATVFQATLEPSAALELARRSRGTPR 219 Query: 234 LAAEVLKETQ 243 +A +L+ + Sbjct: 220 IANRLLRRVR 229 >gi|55217|emb|CAA78412.1| murine valosin-containing protein [Mus musculus] Length = 806 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + ++++D + QL +++ + Q ++M A P S Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356 Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181 + +PD RL+ + L DD LE+V Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399 Score = 39.0 bits (90), Expect = 0.58, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566 >gi|47523626|ref|NP_999445.1| transitional endoplasmic reticulum ATPase [Sus scrofa] gi|1174636|sp|P03974|TERA_PIG RecName: Full=Transitional endoplasmic reticulum ATPase; Short=TER ATPase; AltName: Full=15S Mg(2+)-ATPase p97 subunit; AltName: Full=Valosin-containing protein; Short=VCP gi|164726|gb|AAA31142.1| valosin-containing protein [Sus scrofa] Length = 806 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + ++++D + QL +++ + Q ++M A P S Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356 Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181 + +PD RL+ + L DD LE+V Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399 Score = 39.0 bits (90), Expect = 0.58, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566 >gi|321461136|gb|EFX72171.1| hypothetical protein DAPPUDRAFT_308570 [Daphnia pulex] Length = 802 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 40/205 (19%), Positives = 79/205 (38%), Gaps = 60/205 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + + SN+ K+ + + Sbjct: 235 PPRGILLFGPPGTGKTLIARAVANETGAFFYLINGPEIMSKLAGESESNLRKAFEEAEKN 294 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + ++++D + QL +++ + Q ++M A P S Sbjct: 295 SPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRSHVIVMAATNRPNSIDAA 354 Query: 155 L--------------PDLCSRLKAATVVKIS-----LPDDDFLEKVIVKMFADRQIFIDK 195 L PD RL+ V++I L DD LE+V A+ + Sbjct: 355 LRRFGRFDREVDIGIPDATGRLE---VLRIHTKNMKLADDVDLEQV----AAETHGHVGA 407 Query: 196 KLAAYIVQRMERSLVFAEKLVDKMD 220 +AA S +++ +KMD Sbjct: 408 DIAALC------SEAALQQIREKMD 426 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 508 PSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKA 564 >gi|270358348|gb|ACZ81397.1| 26S protease regulatory subunit 6A [Equus caballus] Length = 403 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 183 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 242 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + + ++N + Q ++ + ++ A Sbjct: 243 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 302 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ +P+++ +++ R++ + + + R Sbjct: 303 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 356 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ ++ G T Sbjct: 357 GAQCKAVCVEAGMIALRRGAT 377 >gi|265755703|ref|ZP_06090324.1| transposase TnpB [Bacteroides sp. 3_1_33FAA] gi|319641359|ref|ZP_07996054.1| insertion sequence IS21-like ATP-binding protein [Bacteroides sp. 3_1_40A] gi|263234309|gb|EEZ19902.1| transposase TnpB [Bacteroides sp. 3_1_33FAA] gi|317387040|gb|EFV67924.1| insertion sequence IS21-like ATP-binding protein [Bacteroides sp. 3_1_40A] Length = 253 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 24/117 (20%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDTR 108 +IL+GPSG+GK+ LA + + +++ I+ I Sbjct: 103 LILMGPSGTGKTFLAAGLVFDAVKAGYKAYLMTMEDIVNCLRLKDISTPAMMTYNKILRA 162 Query: 109 KPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD--LCS 160 + + ++DI L T F++IN++H+ +S+++T P W L D L S Sbjct: 163 QLLAIDDIMLFPVKREEATAFFNLINTLHE-KTSIIITTNKAPTEWVETLNDEILAS 218 >gi|148670553|gb|EDL02500.1| valosin containing protein, isoform CRA_a [Mus musculus] Length = 814 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + ++++D + QL +++ + Q ++M A P S Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356 Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181 + +PD RL+ + L DD LE+V Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399 Score = 39.0 bits (90), Expect = 0.58, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566 >gi|58040097|ref|YP_192061.1| recombination factor protein RarA [Gluconobacter oxydans 621H] gi|58002511|gb|AAW61405.1| ATPase associated with chromosome architecture/replication [Gluconobacter oxydans 621H] Length = 470 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 71/187 (37%), Gaps = 26/187 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL G G GK+ +A + + ++ +S I+ + R + T L Sbjct: 90 LILWGGPGCGKTTIARLLAGRAG-LFYSQISAVFSGVADLRRAFEEADKKQAATGKGTLL 148 Query: 127 F----HIINSIHQYD-------SSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172 F H N Q ++++ T + L SR V+ ++ Sbjct: 149 FVDEIHRFNRAQQDGFLPYVERGTVVLVGATTENPSFALNAA---LLSR---CQVLVLNR 202 Query: 173 PDDDFLEKVIVKMFAD--RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 DD LE ++V + R + +D + A + + + +V+++ +AL + Sbjct: 203 LDDASLESLLVHAEEEVGRPLPLDPEARASLRAMADGDGRYLLNMVEQL--VALDPSKVL 260 Query: 231 T-RSLAA 236 T R LAA Sbjct: 261 TPRDLAA 267 >gi|6005942|ref|NP_009057.1| transitional endoplasmic reticulum ATPase [Homo sapiens] gi|225543319|ref|NP_033529.3| transitional endoplasmic reticulum ATPase [Mus musculus] gi|291383033|ref|XP_002708056.1| PREDICTED: valosin-containing protein [Oryctolagus cuniculus] gi|297684123|ref|XP_002819702.1| PREDICTED: transitional endoplasmic reticulum ATPase-like [Pongo abelii] gi|332831823|ref|XP_003312111.1| PREDICTED: transitional endoplasmic reticulum ATPase [Pan troglodytes] gi|6094447|sp|P55072|TERA_HUMAN RecName: Full=Transitional endoplasmic reticulum ATPase; Short=TER ATPase; AltName: Full=15S Mg(2+)-ATPase p97 subunit; AltName: Full=Valosin-containing protein; Short=VCP gi|146291078|sp|Q01853|TERA_MOUSE RecName: Full=Transitional endoplasmic reticulum ATPase; Short=TER ATPase; AltName: Full=15S Mg(2+)-ATPase p97 subunit; AltName: Full=Valosin-containing protein; Short=VCP gi|185177986|pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX gi|185177987|pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX gi|185177988|pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX gi|185177989|pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp gi|185177990|pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp gi|185177991|pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp gi|185177992|pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp gi|185177993|pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP gi|185177994|pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP gi|185177995|pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP gi|2984586|gb|AAC07984.1| TERA_HUMAN [Homo sapiens] gi|5410290|gb|AAD43016.1| transitional endoplasmic reticulum ATPase [Homo sapiens] gi|29144873|gb|AAH43053.1| Valosin containing protein [Mus musculus] gi|29144989|gb|AAH49114.1| Valosin containing protein [Mus musculus] gi|55662798|emb|CAH70993.1| valosin-containing protein [Homo sapiens] gi|74140012|dbj|BAE31840.1| unnamed protein product [Mus musculus] gi|74185284|dbj|BAE30119.1| unnamed protein product [Mus musculus] gi|74191623|dbj|BAE30383.1| unnamed protein product [Mus musculus] gi|74197192|dbj|BAE35141.1| unnamed protein product [Mus musculus] gi|74211628|dbj|BAE29175.1| unnamed protein product [Mus musculus] gi|83405636|gb|AAI10914.1| Valosin-containing protein [Homo sapiens] gi|119578808|gb|EAW58404.1| valosin-containing protein, isoform CRA_b [Homo sapiens] gi|122889766|emb|CAM14316.1| valosin containing protein [Mus musculus] gi|168278060|dbj|BAG11008.1| transitional endoplasmic reticulum ATPase [synthetic construct] Length = 806 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + ++++D + QL +++ + Q ++M A P S Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356 Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181 + +PD RL+ + L DD LE+V Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399 Score = 39.0 bits (90), Expect = 0.58, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566 >gi|110638794|ref|YP_679003.1| recombination factor protein RarA [Cytophaga hutchinsonii ATCC 33406] gi|110281475|gb|ABG59661.1| ATPase, AAA family [Cytophaga hutchinsonii ATCC 33406] Length = 420 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 50/133 (37%), Gaps = 18/133 (13%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLED 115 +IL GP G GK+ LA + + S+ + + + + D + + +++ Sbjct: 41 PSMILWGPPGVGKTTLAQLLAKTVGLPFYTLSAISSGVKEVREVIANAQTDGKAVLFIDE 100 Query: 116 IDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 I + L + + L+ A T S+ V +P L SR V + Sbjct: 101 IHRFSKSQQDALL----GAVEKGTIQLIGATTENPSFEV-IPALLSR---CQVYVLQPLS 152 Query: 175 DDFLEKVIVKMFA 187 ++ L +++ Sbjct: 153 EEELVELMRSALK 165 >gi|258645316|ref|ZP_05732785.1| ATPase, AAA family [Dialister invisus DSM 15470] gi|260402665|gb|EEW96212.1| ATPase, AAA family [Dialister invisus DSM 15470] Length = 474 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 22/165 (13%), Positives = 55/165 (33%), Gaps = 30/165 (18%) Query: 49 IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTR 108 ++I+ ++L GP G GK+ +A++ + ++ A S + I Sbjct: 79 NSFLYKMIERD---TVPSLLLFGPPGCGKTTIASVIAKMTKFKFLKLNATSSGAKEIRDI 135 Query: 109 KPVLLEDIDLLD------FNDTQLFHIINSIH--------QYDSSLLM--TARTFPVSWG 152 P +++ ++ H N + + +L+ T Sbjct: 136 VPAAQKELQYYGRRTIVFIDEV---HRFNRAQQDLLLPYVENGTFILIGATTENPYFELN 192 Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD--RQIFIDK 195 L SR++ ++ + D + ++ K D + + + Sbjct: 193 GS---LLSRIR---LIHLKPLSIDSIVLILQKALTDKNKGLGMHD 231 >gi|254514312|ref|ZP_05126373.1| AAA ATPase, central domain protein [gamma proteobacterium NOR5-3] gi|219676555|gb|EED32920.1| AAA ATPase, central domain protein [gamma proteobacterium NOR5-3] Length = 411 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 62/178 (34%), Gaps = 31/178 (17%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P +IL GP G GK+ LA + D S S A I R+ V + + + Sbjct: 24 PLHSMILWGPPGVGKTTLAQLLCDASDSRMLKLSAVMDGVKAI--REAVAVGEAERASGR 81 Query: 123 DTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVV 168 LF H N + + L+ T L SR A V Sbjct: 82 QCVLFVDEVHRFNKSQQDAFLPFVENGTLTLIGATTENPAFELNSA---LLSR---ARVY 135 Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF---AEKLVDKMDNLA 223 ++ D L ++ + + + ++ +QR +L A ++++ ++ A Sbjct: 136 RLRSLSVDELVMILHRGEIEVGLELND------LQRQRLALAADGDARRVLNLLELAA 187 >gi|156839538|ref|XP_001643459.1| hypothetical protein Kpol_483p20 [Vanderwaltozyma polyspora DSM 70294] gi|156114070|gb|EDO15601.1| hypothetical protein Kpol_483p20 [Vanderwaltozyma polyspora DSM 70294] Length = 783 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 57/155 (36%), Gaps = 32/155 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110 P R V+L GP G+GK+ L ++ S + + S+ S + + Sbjct: 279 PPRGVLLHGPPGTGKTMLLRCVANSSNAHVLTINGPSIVSKYLGETEAKLREIFDEAQKY 338 Query: 111 ----VLLEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 + +++ID L N L +++ + +++ A P S Sbjct: 339 QPSIIFIDEIDSLAPNRANDDSGEVESRVVATLLTLMDGMGGSGRLVVVAATNRPNS--- 395 Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 P L + V+I +PD D ++ K F+ Sbjct: 396 VDPALRRPGRFDQEVEIGIPDVDARFDILKKQFSR 430 >gi|74192715|dbj|BAE34876.1| unnamed protein product [Mus musculus] Length = 806 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + ++++D + QL +++ + Q ++M A P S Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356 Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181 + +PD RL+ + L DD LE+V Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399 Score = 39.0 bits (90), Expect = 0.59, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566 >gi|298508317|pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs gi|298508318|pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs gi|298508319|pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs gi|298508320|pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs gi|298508321|pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs gi|298508322|pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs Length = 489 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + ++++D + QL +++ + Q ++M A P S Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356 Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181 + +PD RL+ + L DD LE+V Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399 >gi|220904438|ref|YP_002479750.1| recombination factor protein RarA [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868737|gb|ACL49072.1| AAA ATPase central domain protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 407 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 66/162 (40%), Gaps = 14/162 (8%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSIL--IDTRKPVLLEDIDLLD 120 ++ GP G GKS LA + + + T R S L + + + ++L+++ Sbjct: 39 PSLLFFGPPGCGKSTLALLLAKGTGKTFLRLSAPEAGLQHLRRSLSGIEILVLDELHRFS 98 Query: 121 FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 F + + D +LL T P + V L SRL V+++ L + Sbjct: 99 KAQQDFF--LPLVESGDLTLLATTTENPS-FSVTRQ-LLSRL---HVLRLRPLGRTELVE 151 Query: 181 VIVKMFADRQIFIDKKLAAYI--VQRME-RSLVFAEKLVDKM 219 + + D Q+ + +LA + V + R+L+ + V + Sbjct: 152 LARRGAMDLQVEMPDELAELLAGVAHGDARTLLNLVEYVAAL 193 >gi|113206112|ref|NP_001038129.1| transitional endoplasmic reticulum ATPase [Gallus gallus] gi|53126280|emb|CAG30944.1| hypothetical protein RCJMB04_1c3 [Gallus gallus] gi|90990971|dbj|BAE92937.1| valosin containing protein [Gallus gallus] Length = 806 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + ++++D + QL +++ + Q ++M A P S Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356 Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181 + +PD RL+ + L DD LE+V Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399 Score = 39.0 bits (90), Expect = 0.60, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566 >gi|26390141|dbj|BAC25849.1| unnamed protein product [Mus musculus] Length = 806 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + ++++D + QL +++ + Q ++M A P S Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356 Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181 + +PD RL+ + L DD LE+V Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399 Score = 39.0 bits (90), Expect = 0.60, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566 >gi|73971224|ref|XP_866152.1| PREDICTED: similar to Transitional endoplasmic reticulum ATPase (TER ATPase) (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing protein) (VCP) isoform 10 [Canis familiaris] Length = 762 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 193 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 252 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + ++++D + QL +++ + Q ++M A P S Sbjct: 253 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 312 Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181 + +PD RL+ + L DD LE+V Sbjct: 313 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 355 Score = 39.0 bits (90), Expect = 0.60, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 466 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 522 >gi|73971220|ref|XP_866121.1| PREDICTED: similar to Transitional endoplasmic reticulum ATPase (TER ATPase) (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing protein) (VCP) isoform 8 [Canis familiaris] Length = 505 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + ++++D + QL +++ + Q ++M A P S Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356 Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181 + +PD RL+ + L DD LE+V Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399 >gi|73971218|ref|XP_866104.1| PREDICTED: similar to Transitional endoplasmic reticulum ATPase (TER ATPase) (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing protein) (VCP) isoform 7 [Canis familiaris] Length = 451 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + ++++D + QL +++ + Q ++M A P S Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356 Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181 + +PD RL+ + L DD LE+V Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399 >gi|73971228|ref|XP_538712.2| PREDICTED: similar to Transitional endoplasmic reticulum ATPase (TER ATPase) (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing protein) (VCP) isoform 1 [Canis familiaris] Length = 812 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + ++++D + QL +++ + Q ++M A P S Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356 Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181 + +PD RL+ + L DD LE+V Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399 Score = 39.0 bits (90), Expect = 0.60, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566 >gi|325526164|gb|EGD03808.1| recombination factor protein RarA [Burkholderia sp. TJI49] Length = 251 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 58/170 (34%), Gaps = 22/170 (12%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +I GP G GK+ LA + + + A I + D T + Sbjct: 50 MIFWGPPGVGKTTLARLTAQAFDCAFVALSAVLGGVKDIRAATARAQQAFD-GAGRRTIV 108 Query: 127 F----HIINSIHQY--------DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N Q + + + A T S+ V L SR A V + + Sbjct: 109 FVDEIHRFNDTQQAALLPSVASGAVIFIGATTENPSFEVNSA-LLSR---AQVYVLQSLN 164 Query: 175 DDFLEKVIVKM--FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 DD + +++ + A + D K +V + A + ++ ++ Sbjct: 165 DDEMRQLLRRAQEIALDGLAFDDKAVDTLVGYAD---GDARRFLNLLEQA 211 >gi|67484218|ref|XP_657329.1| cell division cycle protein 48 [Entamoeba histolytica HM-1:IMSS] gi|56474515|gb|EAL51880.1| cell division cycle protein 48, putative [Entamoeba histolytica HM-1:IMSS] Length = 794 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 24/164 (14%), Positives = 67/164 (40%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G GK+ +A ++++ + F SN+ ++ + + Sbjct: 225 PPRGILLYGPPGCGKTMIARAIANETGAFFFLINGPEIMSKMAGESESNLRRAFEEAEKN 284 Query: 107 TRKPVLLEDIDLLD------FND------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + + +QL +++ + +++ A P + V Sbjct: 285 SPAIIFIDEIDSIAPKRDKSGGEVERRVVSQLLTLMDGLKARSQVIVIAATNRPNTIDVA 344 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L R + + + +PD + ++++ +++ I + Sbjct: 345 LR----RFGRFDREIDLGIPDTEGRKEILQ--IHTKKMKIADDV 382 >gi|126334782|ref|XP_001368198.1| PREDICTED: similar to valosin [Monodelphis domestica] Length = 806 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + ++++D + QL +++ + Q ++M A P S Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356 Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181 + +PD RL+ + L DD LE+V Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399 Score = 39.0 bits (90), Expect = 0.60, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566 >gi|73971226|ref|XP_866167.1| PREDICTED: similar to Transitional endoplasmic reticulum ATPase (TER ATPase) (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing protein) (VCP) isoform 11 [Canis familiaris] Length = 776 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + ++++D + QL +++ + Q ++M A P S Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356 Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181 + +PD RL+ + L DD LE+V Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399 Score = 39.0 bits (90), Expect = 0.60, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566 >gi|242399369|ref|YP_002994793.1| Pk-cdcA protein [Thermococcus sibiricus MM 739] gi|242265762|gb|ACS90444.1| Pk-cdcA protein [Thermococcus sibiricus MM 739] Length = 839 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 29/207 (14%), Positives = 76/207 (36%), Gaps = 41/207 (19%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109 P + V+L GP G+GK+ LA ++++ + + + L I + + Sbjct: 246 PPKGVLLYGPPGTGKTLLAKAVANEANAHFIAINGPEIMSKYYGESEERLRDIFKEAEEN 305 Query: 110 ---PVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + +++ A P + Sbjct: 306 APSIIFIDEIDAIAPKREEVTGEVEKRVVSQLLTLMDGLKSRGKVIVIGATNRPDALD-- 363 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK--------LAAYIVQRME 206 P L + +++ +PD ++++ R + ++ + + + R Sbjct: 364 -PALRRPGRFDREIEVGVPDKQGRKEILQ--IHTRGMPLEPEYDKRSVLRVLNSLKNREA 420 Query: 207 RSLVFAEKLVDKMDNLALSRGMGITRS 233 E+++ K++N + IT Sbjct: 421 FDKERIEEMIQKIENAKEESDIKITLK 447 Score = 44.8 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 42/218 (19%), Positives = 80/218 (36%), Gaps = 46/218 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTRKP 110 P + ++L GP G+GK+ LA +++S + K + I R+ Sbjct: 581 PPKGILLYGPPGTGKTLLAKAVANESEANFIGIRGPEVLSKWVGESEKRIREIFRKARQA 640 Query: 111 ----VLLEDIDLLD---FND---------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 V ++++D + + QL ++ I + +++ A P Sbjct: 641 APTVVFIDEVDSIAPMRGGEGDRVTDRLINQLLTEMDGIEENSGVVVIAATNRPDILDPA 700 Query: 155 LPDLC----SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME-RSL 209 L L RL + + PD+ +++ K+ R + ++ E S Sbjct: 701 L--LRPGRFDRL-----ILVPAPDEKARLEIL-KVHTRRVPLASDVSLQELAKKTEGYSG 752 Query: 210 VFAEKLVDKMDNLALSRGMGIT-RSL----AAEVLKET 242 LV + +AL R + IT R L A E L++ Sbjct: 753 ADLAALVREAAFVALRRAVSITSRDLVEDQAEEFLEKL 790 >gi|156938218|ref|YP_001436014.1| ATPase AAA [Ignicoccus hospitalis KIN4/I] gi|156567202|gb|ABU82607.1| AAA family ATPase, CDC48 subfamily [Ignicoccus hospitalis KIN4/I] Length = 729 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 25/163 (15%), Positives = 60/163 (36%), Gaps = 33/163 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTR-- 108 P + V+L GP G+GK+ LA +++ + + + L I + R Sbjct: 222 PPKGVLLYGPPGTGKTMLAKALANEIGAYFIAINGPEIMSKYYGESEQRLREIFEEARKN 281 Query: 109 --KPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + + +++ A P + Sbjct: 282 APSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLQERGRVVVIGATNRPDAID-- 339 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L + ++I PD + ++ R + + + + Sbjct: 340 -PALRRPGRFDREIEIPPPDKRARKAILEVH--TRNVPLAEDV 379 Score = 39.0 bits (90), Expect = 0.62, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 20/32 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + ++L GP G+GK+ LA + +S++ + Sbjct: 498 PPKGILLFGPPGTGKTLLAKAAATESQANFIA 529 >gi|120598817|ref|YP_963391.1| recombination factor protein RarA [Shewanella sp. W3-18-1] gi|120558910|gb|ABM24837.1| Recombination protein MgsA [Shewanella sp. W3-18-1] Length = 443 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 36/177 (20%), Positives = 66/177 (37%), Gaps = 34/177 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLD---F 121 ++L GP G+GK+ LA + + S + R S + + I +E + Sbjct: 52 MMLWGPPGTGKTTLAELIAQYSNAHVERISAVTSGVKEIR------AAIEQAKAIAESRG 105 Query: 122 NDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 T LF H N + + + + A T S+ + L SR A V Sbjct: 106 QRTLLFVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEINNA-LLSR---ARVYL 161 Query: 170 ISLPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 I +D + ++ + AD RQ+ + + + + Q + A L++ M Sbjct: 162 IKRLSNDEIAHIVTQALADTERGLGLRQLEMPESVLIKLAQLCDGDARKALNLLELM 218 >gi|229815204|ref|ZP_04445540.1| hypothetical protein COLINT_02250 [Collinsella intestinalis DSM 13280] gi|229809214|gb|EEP44980.1| hypothetical protein COLINT_02250 [Collinsella intestinalis DSM 13280] Length = 441 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 73/187 (39%), Gaps = 34/187 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS--------------LDSILIDTRKPVL 112 VIL GP+G+GK+ LA+I + ++S A + ++ D R + Sbjct: 56 VILYGPAGTGKTTLAHIIASHTKSEFVEVSAVTGTVKDLRREIDEAKHRLMMFDRRTILF 115 Query: 113 LEDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++I L H + + +++ A T + V L SR + VV++ Sbjct: 116 IDEIHRFSRSQQDALLH----AVENRTVVMIGATTENPYFEVNSA-LLSR---SRVVELE 167 Query: 172 LPDDDFLEKVIVKMFA-----DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 D+ +E+++ + + D + ++ I + A + L L+ Sbjct: 168 HLADEDVERLVRRALSAPEGLDGRFSASDEVIRAICT------LAAGDGRSSLTTLELAS 221 Query: 227 GMGITRS 233 + +TR Sbjct: 222 EIALTRP 228 >gi|148241495|ref|YP_001226652.1| recombination factor protein RarA/unknown domain fusion protein [Synechococcus sp. RCC307] gi|147849805|emb|CAK27299.1| ATPase related to the helicase subunit of the Holliday junction resolvase [Synechococcus sp. RCC307] Length = 719 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 47/201 (23%), Positives = 80/201 (39%), Gaps = 29/201 (14%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G+GK+ LA I ++ +R S A + E + T Sbjct: 56 GSLILHGPPGTGKTTLARIIANTTRCHFSSLNAVLAGIKDLRAEVEQAQERLGRHGLR-T 114 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N+ + + L+ A T + V L SR + + ++ Sbjct: 115 LLFIDEVHRFNTSQQDALLPWVENGTVTLIGATTENPFFEVNKA-LVSR---SRLFRLQS 170 Query: 173 PDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRME---RS-LVFAEKLVDKMDN 221 D L +V+ + +D R I +D + A++V+ RS L E V+ D Sbjct: 171 LDQAALHQVLDRALSDRTHGYGERSIQLDAEARAHLVEVAGGDARSLLNALELAVETTDA 230 Query: 222 LALSRGMGITRSLAAEVLKET 242 A S + IT ++A E +++ Sbjct: 231 NA-SGAIQITLAVAEESIQQQ 250 >gi|78070729|gb|AAI07805.1| PSMC3 protein [Homo sapiens] Length = 491 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 271 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 330 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + + ++N + Q ++ + ++ A Sbjct: 331 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 390 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ +P+++ +++ R++ + + + R Sbjct: 391 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 444 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ ++ G T Sbjct: 445 GAQCKAVCVEAGMIALRRGAT 465 >gi|33863885|ref|NP_895445.1| recombination factor protein RarA/unknown domain fusion protein [Prochlorococcus marinus str. MIT 9313] gi|33635468|emb|CAE21793.1| putative ATPase, AAA family [Prochlorococcus marinus str. MIT 9313] Length = 735 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 39/201 (19%), Positives = 76/201 (37%), Gaps = 35/201 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G GK+ LA I + +R+ S A + + ++ T L Sbjct: 57 LLLHGPPGVGKTTLARIIAGHTRANFSSLNAVLAGVKELRQEVDAAKQRLERHGLR-TIL 115 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H NS + + L+ A T + V L SR + + ++ + Sbjct: 116 FIDEVHRFNSAQQDALLPWVENGTVTLIGATTENPYFEVNKA-LVSR---SRLFRLQALE 171 Query: 175 DDFLEKVI-------VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 + L +++ + + DRQ+ + A ++V A L++ + LA+ Sbjct: 172 NADLHRLLKHALQDCERGYGDRQVMLSTAAANHLVNVAN---GDARSLLNAL-ELAVESS 227 Query: 228 MG-------ITRSLAAEVLKE 241 I ++A E ++E Sbjct: 228 RPNEQGSIHINLAIAEESIQE 248 >gi|121606099|ref|YP_983428.1| recombination factor protein RarA [Polaromonas naphthalenivorans CJ2] gi|120595068|gb|ABM38507.1| Recombination protein MgsA [Polaromonas naphthalenivorans CJ2] Length = 432 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 33/193 (17%), Positives = 70/193 (36%), Gaps = 26/193 (13%) Query: 68 ILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKP------------VLL 113 IL GP G GK+ +A + + + S + + I + V + Sbjct: 48 ILWGPPGVGKTTIARLMASSFDAHFITISAVLGGVKDIREAVEQATIWQGQGGRRTIVFV 107 Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 +++ + + F + + A T S+ V L SR A V + Sbjct: 108 DEVHRFNKSQQDAFLPH---VESGLFTFIGATTENPSFEVNSA-LLSR---AVVYVLQPL 160 Query: 174 DDDFLEKVIVKMFADRQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-M 228 +D L+++I ++ ++R + I + +V + ++ + A + Sbjct: 161 TEDDLKQIIARVLSERALPAIETIAVEAVDRLVAYADGDARRLLNTLESLSVAARAEKIT 220 Query: 229 GITRSLAAEVLKE 241 G+T + +VL E Sbjct: 221 GVTDAWLLKVLGE 233 >gi|298508329|pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs gi|298508330|pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs Length = 489 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + ++++D + QL +++ + Q ++M A P S Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356 Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181 + +PD RL+ + L DD LE+V Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399 >gi|149045716|gb|EDL98716.1| valosin-containing protein, isoform CRA_a [Rattus norvegicus] Length = 686 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + ++++D + QL +++ + Q ++M A P S Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356 Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181 + +PD RL+ + L DD LE+V Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399 Score = 39.0 bits (90), Expect = 0.60, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566 >gi|40889614|pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A Length = 816 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + ++++D + QL +++ + Q ++M A P S Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356 Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181 + +PD RL+ + L DD LE+V Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399 Score = 39.0 bits (90), Expect = 0.60, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566 >gi|73971214|ref|XP_866075.1| PREDICTED: similar to Transitional endoplasmic reticulum ATPase (TER ATPase) (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing protein) (VCP) isoform 5 [Canis familiaris] Length = 759 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + ++++D + QL +++ + Q ++M A P S Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356 Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181 + +PD RL+ + L DD LE+V Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399 Score = 39.0 bits (90), Expect = 0.60, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566 >gi|307106887|gb|EFN55131.1| hypothetical protein CHLNCDRAFT_134194 [Chlorella variabilis] Length = 429 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 30/201 (14%), Positives = 69/201 (34%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V+L GP G+GK+ +A + ++ +T SL + I ++ Sbjct: 209 PPKGVLLHGPPGTGKTLIARACAAQTNATFLKLAGTSLVQMFIGDGAKMVRDAFALAKEK 268 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151 +++ID + + ++N + D ++ A P Sbjct: 269 QPCIIFIDEIDAIGTTRRDSEMSGDREVQRTMLELLNQLDGFSSADEVKIIAATNRPDIL 328 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L + S RL ++ P+++ K++ R++ + + + R Sbjct: 329 DPAL--MRSGRLD--RKIEFPHPNEEARAKILQ--IHSRKMTVSPDVNFDELARSTDDFN 382 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ L+ T Sbjct: 383 AAQLKAVCVEAGMLALRRDAT 403 >gi|297483489|ref|XP_002693621.1| PREDICTED: proteasome (prosome, macropain) 26S subunit, ATPase, 3 [Bos taurus] gi|296479707|gb|DAA21822.1| proteasome (prosome, macropain) 26S subunit, ATPase, 3 [Bos taurus] Length = 456 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 236 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 295 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + + ++N + Q ++ + ++ A Sbjct: 296 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 355 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ +P+++ +++ R++ + + + R Sbjct: 356 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 409 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ ++ G T Sbjct: 410 GAQCKAVCVEAGMIALRRGAT 430 >gi|332228697|ref|XP_003263530.1| PREDICTED: transitional endoplasmic reticulum ATPase-like [Nomascus leucogenys] Length = 791 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 222 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 281 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + ++++D + QL +++ + Q ++M A P S Sbjct: 282 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 341 Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181 + +PD RL+ + L DD LE+V Sbjct: 342 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 384 Score = 39.0 bits (90), Expect = 0.62, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 495 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 551 >gi|91226056|ref|ZP_01260983.1| hypothetical protein V12G01_20316 [Vibrio alginolyticus 12G01] gi|91189497|gb|EAS75774.1| hypothetical protein V12G01_20316 [Vibrio alginolyticus 12G01] Length = 449 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 44/199 (22%), Positives = 69/199 (34%), Gaps = 38/199 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G+GK+ LA + ++ + + A + I E+ + T L Sbjct: 54 MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAREN--KMAGRRTIL 111 Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172 F H N Q D ++ T L SR A V K++ Sbjct: 112 FVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKLTS 165 Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIV------QRMERSLVFAEKLVDKM 219 D D + + + +D R + + + RM SL + E L D Sbjct: 166 LDKDEISLALNQAISDKERGLGNTPAHFADNVLDRLAELVNGDARM--SLNYLELLYDMA 223 Query: 220 DNLALSRGMGITRSLAAEV 238 ++ A IT L AEV Sbjct: 224 EDNA-QGEKEITLKLLAEV 241 >gi|27544726|dbj|BAC55058.1| DnaA [Mycobacterium szulgai] Length = 191 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 3/50 (6%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI 83 + D ++ ++ A + P+R + + G SG GK+ L + Sbjct: 124 RYTFDTFVIGASNRFAHAATLAIAEAPARAYNPLFIWGESGLGKTHLLHA 173 >gi|298508323|pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs gi|298508324|pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs gi|298508325|pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs gi|298508326|pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs gi|298508327|pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs gi|298508328|pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs Length = 489 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + ++++D + QL +++ + Q ++M A P S Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356 Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181 + +PD RL+ + L DD LE+V Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399 >gi|325142473|gb|EGC64877.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis 961-5945] gi|325198390|gb|ADY93846.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis G2136] Length = 436 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 56/134 (41%), Gaps = 20/134 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G GK+ LA I + + A S + D R + +I L T L Sbjct: 50 MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIRGAIDKAEIALQQGRATIL 107 Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 F H N Q D+ L L+T A T S+ V P L SR A V + Sbjct: 108 FVDEVHRFNKAQQ-DAFLPHVESGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQPL 162 Query: 174 DDDFLEKVIVKMFA 187 D L+K+I K+ A Sbjct: 163 SSDDLKKLIAKVLA 176 >gi|300361690|ref|ZP_07057867.1| crossover junction endodeoxyribonuclease [Lactobacillus gasseri JV-V03] gi|300354309|gb|EFJ70180.1| crossover junction endodeoxyribonuclease [Lactobacillus gasseri JV-V03] Length = 426 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 64/168 (38%), Gaps = 26/168 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK---------PVLLEDID 117 ++L GP G+GK+ LA I + + + S+D+ T+ +L+++I Sbjct: 44 LLLWGPPGTGKTSLAQIIAREFD-YPLATFNASIDNKAKLTQIINTYPYQSFVLLIDEIH 102 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 + + LL+ A T + P + SR + + D+ Sbjct: 103 RMTTTLQDFLLPY---LENGRILLIGATTENPIMSIV-PAVRSR---CQIFEFKTLSDED 155 Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD-NLAL 224 +E+V+V+ ++ + + ++R V + D +AL Sbjct: 156 IEQVLVRALK--------EVFHFKDENIDRKAVKIIAISADGDLRVAL 195 >gi|150010979|gb|ABR57146.1| ATPase AAA family protein [Staphylococcus xylosus] Length = 425 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 34/200 (17%), Positives = 75/200 (37%), Gaps = 39/200 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117 +I GP G GK+ +A S ++ + ++ ++ + + +LL++I Sbjct: 43 MIFYGPPGIGKTSIAKAISGSTQFKFRQLNAVTNTKKDMQLIVEEAKMSGQVILLLDEIH 102 Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 L D L H+ N +L+ T + P + SR A + ++ Sbjct: 103 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 151 Query: 174 DDDFLEKVIVKMFAD--RQIF-----IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS- 225 D++ ++ + + D R + +D+ +Y + S ++ ++ LS Sbjct: 152 DENDIKVSLNRALNDEERGLASYNPIVDEDAMSYFTTQ---SQGDVRSALNALELAVLSS 208 Query: 226 ----RGMGITRSLAAEVLKE 241 IT A + L++ Sbjct: 209 DTTDSQRYITLQDAKDCLQK 228 >gi|228987151|ref|ZP_04147275.1| Prophage LambdaBa02, DNA replication protein DnaC [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228772605|gb|EEM21047.1| Prophage LambdaBa02, DNA replication protein DnaC [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 164 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 48/121 (39%), Gaps = 24/121 (19%) Query: 56 IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL----------- 104 + ++ W ++L G G+GK+ LA ++ + + +S+ +L Sbjct: 4 VKTFKEWNGESLMLWGEPGNGKTHLAAAIVNELSKKGYIVVFQSVPELLQRIRSTFNSEN 63 Query: 105 ----------IDTRKPVLLEDIDL---LDFNDTQLFHIINSIHQYDSSLLMTARTFPVSW 151 + ++L+DI ++ + +LF+II+ ++ + L T+ P Sbjct: 64 KENETQIMRALLECDLLILDDIGAEKTTEWVEEKLFNIIDGRYRKELPTLYTSNLEPKEL 123 Query: 152 G 152 Sbjct: 124 K 124 >gi|218781932|ref|YP_002433250.1| ATPase AAA [Desulfatibacillum alkenivorans AK-01] gi|218763316|gb|ACL05782.1| AAA ATPase central domain protein [Desulfatibacillum alkenivorans AK-01] Length = 441 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 53/137 (38%), Gaps = 23/137 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125 +I GP G GK+ LA I ++ S+S A + + V+ E D +F+ + Sbjct: 49 MIFWGPPGCGKTTLARIMANASQSYFMQISAVGSG---VKQIREVVEEAKDRRNFHAQKS 105 Query: 126 -LF----HIINSIHQYDSSL---------LMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 LF H N Q L L+ A T S+ V P L SR VV + Sbjct: 106 ILFVDEIHRFNKAQQDG-FLPHVESGIITLIGATTENPSFEVISP-LLSR---CRVVVLK 160 Query: 172 LPDDDFLEKVIVKMFAD 188 D ++ VI D Sbjct: 161 PLSSDDMKTVIQNAVQD 177 >gi|109947662|ref|YP_664890.1| recombination factor protein RarA [Helicobacter acinonychis str. Sheeba] gi|109714883|emb|CAJ99891.1| conserved hypothetical helicase-like protein [Helicobacter acinonychis str. Sheeba] Length = 393 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 70/189 (37%), Gaps = 25/189 (13%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKP--------VLLE 114 GP G GK+ LA I + F+ LD + + + V ++ Sbjct: 38 PHAFFYGPPGVGKTSLAQIIAHSLERPILSFNATDFKLDDLRLKLKNYQHALLKPIVFID 97 Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 + L+ + I + D +L++ A T ++ + + SR + + +++ + Sbjct: 98 ETHRLNKTQQEFLLPI---MEKDHALILGASTQDPNYSLSHA-IRSR---SFIFELTPLN 150 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234 + L+K+ K I+ Y++ S A L++ +D A I + Sbjct: 151 ESDLDKLCSKALTLLNKQIEPSAKTYLLNN---STGDARALLNLLDLSA-----KIEDPI 202 Query: 235 AAEVLKETQ 243 E LK + Sbjct: 203 TLETLKSLR 211 >gi|1705678|sp|P54774|CDC48_SOYBN RecName: Full=Cell division cycle protein 48 homolog; AltName: Full=Valosin-containing protein homolog; Short=VCP gi|862480|gb|AAA80587.1| valosin-containing protein [Glycine max] gi|86212372|gb|ABC87759.1| plamsma membrane-associated AAA-ATPase [Glycine max] Length = 807 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 63/164 (38%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP GSGK+ +A ++++ + F SN+ K+ + + Sbjct: 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN 300 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + +++ A P S Sbjct: 301 APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSID-- 358 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PD+ +V+ + + + + Sbjct: 359 -PALR-RFGRFDREIDIGVPDEVGRLEVL--RIHTKNMKLSDDV 398 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 514 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 570 >gi|332829214|gb|EGK01878.1| hypothetical protein HMPREF9455_02026 [Dysgonomonas gadei ATCC BAA-286] Length = 422 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 79/206 (38%), Gaps = 39/206 (18%) Query: 65 RVVILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSI-----------LIDTRKPV 111 +L GP G GK+ LA I ++ + S I + + +T+ P+ Sbjct: 40 PSFLLWGPPGVGKTTLAQIIANTLDTPFYTLSAINSGVKDVREVIEQAKKSQFFNTKSPI 99 Query: 112 L-LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 L +++I + ++N++ + L+ A T S+ V P L SR V + Sbjct: 100 LFIDEIHRFSKSQQD--SLLNAV-ETGVITLIGATTENPSFEVIRP-LLSR---CQVYVL 152 Query: 171 SLPD-DDFL----EKVIVK-MFADRQIFIDK--KLAAYIVQRMERSLVFAEKLVDKMD-- 220 D DD + V + +R + + + L + S A KL++ +D Sbjct: 153 QSLDKDDLIELAHRAVTQDIILKERNVELQETNALLRF-------SGGDARKLLNILDLV 205 Query: 221 -NLALSRGMGITRSLAAEVLKETQQC 245 +S + IT L E L+E Sbjct: 206 TGADVSDKIVITDKLVTERLQENPAA 231 >gi|308174454|ref|YP_003921159.1| helicase associated protein [Bacillus amyloliquefaciens DSM 7] gi|307607318|emb|CBI43689.1| putative helicase associated protein (ATPase, AAA family) [Bacillus amyloliquefaciens DSM 7] gi|328554373|gb|AEB24865.1| recombination factor protein RarA [Bacillus amyloliquefaciens TA208] gi|328912777|gb|AEB64373.1| putative helicase associated protein (ATPase, AAA family) [Bacillus amyloliquefaciens LL3] Length = 422 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 30/197 (15%), Positives = 70/197 (35%), Gaps = 32/197 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKS-------RSTRFS--NIAKSLDSILIDTRKPVLLEDID 117 +IL GP G GK+ +A + + + + ++ + + + ++L+++ Sbjct: 41 MILYGPPGIGKTSIATAIAGSTSIAFRKLNAVIHNKKDMEIVVQEAKMSGQVILILDEVH 100 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 LD + +L+ A T + P + SR + ++ D Sbjct: 101 RLDKGKQDFLLPY---LENGMIILIGATTANPYHAIN-PAIRSR---TQIFELEPLTPDL 153 Query: 178 LEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM-- 228 +++ + + D R + +D + + Q ++ ++ LS Sbjct: 154 IKQALRRALTDEHRGLGSYSVSVDDEAMDHFAQGCG---GDVRSALNALELAVLSTKESS 210 Query: 229 ----GITRSLAAEVLKE 241 ITR A E L++ Sbjct: 211 DGTIRITRETAEECLQK 227 >gi|304439985|ref|ZP_07399878.1| AAA family ATPase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371477|gb|EFM25090.1| AAA family ATPase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 434 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 36/182 (19%), Positives = 63/182 (34%), Gaps = 36/182 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I GP G GK+ LA I++ S R S I + + + ED + T Sbjct: 55 MIFYGPPGVGKTTLAEIFAGLSGYKFVRISAITSGVKELRELLKTA---EDDLKFNNVKT 111 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + L+ A T + V L SR ++ + Sbjct: 112 ILFIDEIHRFNKSQQDALLPFVEKGLVTLIGATTENPYFEVNSA-LLSR---CQIINLEP 167 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL---------VFAEKLVDKMDNLA 223 ++ L +I + ++ + Y+ R+ A L++ ++ A Sbjct: 168 LKEEDLLLLIERALSE------ENGLKYLNVRLSEDAKKTLILLAGNDARSLLNNLEIAA 221 Query: 224 LS 225 LS Sbjct: 222 LS 223 >gi|297620403|ref|YP_003708540.1| recombination factor RarA [Waddlia chondrophila WSU 86-1044] gi|297375704|gb|ADI37534.1| recombination factor RarA [Waddlia chondrophila WSU 86-1044] Length = 418 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 58/135 (42%), Gaps = 28/135 (20%) Query: 67 VILVGPSGSGKSCLANIWSD------KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120 +IL GP G GK+ +A +++ +S + FS +A + + P+ ++ +L Sbjct: 41 MILWGPPGCGKTSIARLYAQAFAMDFRSLNAIFSGVADLKKIVHEVKQTPLFSQNC-VLF 99 Query: 121 FNDTQLFHIINSIH--------QYDSSLLM--TARTFPVSWGVCLPD-LCSRLKAATVVK 169 ++ H N + + +L+ TA L D L SRL+ V++ Sbjct: 100 VDEI---HRFNKAQQDAFLPFIEDGTIVLIGATAENP----SFYLNDALLSRLR---VLQ 149 Query: 170 ISLPDDDFLEKVIVK 184 + D + LE ++ + Sbjct: 150 LKALDHEALESILER 164 >gi|254523765|ref|ZP_05135820.1| ATPase [Stenotrophomonas sp. SKA14] gi|219721356|gb|EED39881.1| ATPase [Stenotrophomonas sp. SKA14] Length = 425 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 41/197 (20%), Positives = 66/197 (33%), Gaps = 25/197 (12%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD-FNDTQ 125 +IL GP G GK+ LA + ++ S + A S + + VL E T Sbjct: 34 MILWGPPGCGKTTLALLLAEYSDAEF---RAISAVLSGLPEVRQVLAEAAQRFAEGRRTV 90 Query: 126 LF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKIS 171 LF H N Q ++L T L SR + + +S Sbjct: 91 LFVDEVHRFNKAQQDAFLPHIERGTILFVGATTENPSFELNSA---LLSRCRVHVLEGVS 147 Query: 172 LPD--DDFLEKV--IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 D + + + D I + +L I + + A L++ LA G Sbjct: 148 PTDIVEALERALGDRERGLGDEGIEVAPELLLEIATAADGDVRRALTLLEIAAELAGGEG 207 Query: 228 MGITRSLAAEVLKETQQ 244 IT +VL + + Sbjct: 208 GRITPQTLTQVLADRTR 224 >gi|170016573|ref|YP_001727492.1| ATPase [Leuconostoc citreum KM20] gi|169803430|gb|ACA82048.1| ATPase [Leuconostoc citreum KM20] Length = 430 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 36/196 (18%), Positives = 76/196 (38%), Gaps = 28/196 (14%) Query: 67 VILVGPSGSGKSCLANIWS--DKSRSTRFSNIAKSLDSILIDTRKP-------VLLEDID 117 +IL GP G+GK+ +A+ + K + S + I + +LL++I Sbjct: 44 MILYGPPGTGKTSIASAIAGSSKYAFRVLNAATDSQKDLQIVAEEAKMSGTVVLLLDEIH 103 Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 L+ D L H+ + + +L+ A T V P + SR + +++ + Sbjct: 104 RLNKVKQDFLLPHL-----ESGAIILIGATTENPYINVT-PAIRSR---TQIFQVTPLTE 154 Query: 176 DFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228 D ++ + + D ++ + ++ Q L A ++ + L+ Sbjct: 155 DDIKSAVHRALKDDTHGLGKYKVTLTDDAMNHLAQATNGDLRSALNGLE-LAVLSTPTAK 213 Query: 229 GITRSLAAEVLKETQQ 244 T + V++ET Q Sbjct: 214 DKTIHITLPVIEETVQ 229 >gi|269967796|ref|ZP_06181843.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|269827616|gb|EEZ81903.1| conserved hypothetical protein [Vibrio alginolyticus 40B] Length = 449 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 44/199 (22%), Positives = 69/199 (34%), Gaps = 38/199 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G+GK+ LA + ++ + + A + I E+ + T L Sbjct: 54 MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAREN--KMAGRRTIL 111 Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172 F H N Q D ++ T L SR A V K++ Sbjct: 112 FVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKLTS 165 Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIV------QRMERSLVFAEKLVDKM 219 D D + + + +D R + + + RM SL + E L D Sbjct: 166 LDKDEISLALNQAISDKERGLGNTPAHFADNVLDRLAELVNGDARM--SLNYLELLYDMA 223 Query: 220 DNLALSRGMGITRSLAAEV 238 ++ A IT L AEV Sbjct: 224 EDNA-QGEKEITLKLLAEV 241 >gi|217973365|ref|YP_002358116.1| recombination factor protein RarA [Shewanella baltica OS223] gi|217498500|gb|ACK46693.1| AAA ATPase central domain protein [Shewanella baltica OS223] Length = 443 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 39/196 (19%), Positives = 72/196 (36%), Gaps = 35/196 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLD---F 121 ++L GP G+GK+ LA + + S + R S + + I +E + Sbjct: 52 MMLWGPPGTGKTTLAELIAHYSNAHVERISAVTSGVKDIR------AAIEQAKAVAESRG 105 Query: 122 NDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 T LF H N + + + + A T S+ + L SR A V Sbjct: 106 QRTLLFVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEINNA-LLSR---ARVYL 161 Query: 170 ISLPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 I D + ++ + +D RQ + + + Q + A L++ M ++ Sbjct: 162 IKRLSHDEIAHIVTQALSDTERGLGQRQFVMPTDVLTTLAQLCDGDARKALNLIELMSDM 221 Query: 223 ALSRGMGITRSLAAEV 238 L+ G T + +V Sbjct: 222 -LADGGTFTTDMLIQV 236 >gi|319426382|gb|ADV54456.1| AAA ATPase central domain protein [Shewanella putrefaciens 200] Length = 443 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 36/177 (20%), Positives = 66/177 (37%), Gaps = 34/177 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLD---F 121 ++L GP G+GK+ LA + + S + R S + + I +E + Sbjct: 52 MMLWGPPGTGKTTLAELIAQYSNAHVERISAVTSGVKEIR------AAIEQAKAIAESRG 105 Query: 122 NDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 T LF H N + + + + A T S+ + L SR A V Sbjct: 106 QRTLLFVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEINNA-LLSR---ARVYL 161 Query: 170 ISLPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 I +D + ++ + AD RQ+ + + + + Q + A L++ M Sbjct: 162 IKRLSNDEIAHIVTQALADTERGLGLRQLEMPENVLIKLAQLCDGDARKALNLLELM 218 >gi|315038424|ref|YP_004031992.1| recombination factor protein RarA [Lactobacillus amylovorus GRL 1112] gi|312276557|gb|ADQ59197.1| recombination factor protein RarA [Lactobacillus amylovorus GRL 1112] Length = 420 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 74/192 (38%), Gaps = 28/192 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI-----LIDTRKP----VLLEDID 117 ++L GP G+GKS LA I + ++ F++ S+D+ +IDT +L+++I Sbjct: 44 LLLWGPPGTGKSSLARIIA-RTNEYAFASFNASIDNKAKLLNIIDTYPHQTFVLLIDEIH 102 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 + + +L+ A T + P + SR + + D Sbjct: 103 RMTKTLQDFLLPY---LENGHVILIGATTENPIMSIV-PAVRSR---CQIFEFKALTDKD 155 Query: 178 LEKVIVK------MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231 ++ V+ + D Q D++ I + L A +++ + + ++ Sbjct: 156 IQTVLNRAIQKIYHLKDDQ--FDEEAIKLIATSADGDLRVALNILEVIQA---TNPDKLS 210 Query: 232 RSLAAEVLKETQ 243 S + +KE Sbjct: 211 TSAVKQFVKEQH 222 >gi|148670554|gb|EDL02501.1| valosin containing protein, isoform CRA_b [Mus musculus] Length = 822 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 253 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 312 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + ++++D + QL +++ + Q ++M A P S Sbjct: 313 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 372 Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181 + +PD RL+ + L DD LE+V Sbjct: 373 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 415 Score = 39.0 bits (90), Expect = 0.67, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 526 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 582 >gi|229140638|ref|ZP_04269189.1| Prophage LambdaBa02, DNA replication protein DnaC [Bacillus cereus BDRD-ST26] gi|228642811|gb|EEK99091.1| Prophage LambdaBa02, DNA replication protein DnaC [Bacillus cereus BDRD-ST26] Length = 161 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 45/116 (38%), Gaps = 24/116 (20%) Query: 61 SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL---------------- 104 W ++L G G+GK+ LA ++ + + +S+ +L Sbjct: 6 EWKGESLLLWGEPGNGKTHLAAAIVNELSKKGYIVVFQSVPELLQRIRSTFNSENKENET 65 Query: 105 -----IDTRKPVLLEDIDL---LDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWG 152 + ++L+DI ++ + +LF+II+ ++ + L T+ P Sbjct: 66 QIMRALLECDLLILDDIGAEKTTEWVEEKLFNIIDGRYRKELPTLYTSNLEPKELK 121 >gi|239616615|ref|YP_002939937.1| Holliday junction DNA helicase RuvB [Kosmotoga olearia TBF 19.5.1] gi|259495671|sp|C5CIU4|RUVB_KOSOT RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|239505446|gb|ACR78933.1| Holliday junction DNA helicase RuvB [Kosmotoga olearia TBF 19.5.1] Length = 342 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 73/184 (39%), Gaps = 34/184 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G GK+ LA+I +++ + + ++ LE+ D+L ++ Sbjct: 55 VLLAGPPGLGKTTLAHIIANEMGTNIYVTSGPVIEKQGDLAAILTSLEEGDVLFIDEI-- 112 Query: 127 FHIINSIHQYDSSLLMTA----------RTFPVSWGVCLPDL----------CS------ 160 H + + +L +A P + + L DL S Sbjct: 113 -HRLGRAIEE---ILYSAMEDFKLDIMIGKGPSARSIRL-DLAPFTLVGATTRSGLIGAP 167 Query: 161 -RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 R + V+++ D L+++I + ++ ID + A + R + A +L+ ++ Sbjct: 168 LRNRFGMVLELEFYTPDELKQIIKRSARLLEVKIDDEAAELLASRSRGTPRIANRLLRRV 227 Query: 220 DNLA 223 +LA Sbjct: 228 RDLA 231 >gi|27544698|dbj|BAC55044.1| DnaA [Mycobacterium gastri] Length = 186 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 3/50 (6%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI 83 + D ++ ++ A + P+R + + G SG GK+ L + Sbjct: 119 RYTFDTFVIGASNRFAHAATLAIAEAPARAYNPLFIWGESGLGKTHLLHA 168 >gi|228472019|ref|ZP_04056787.1| ATPase, AAA family [Capnocytophaga gingivalis ATCC 33624] gi|228276631|gb|EEK15344.1| ATPase, AAA family [Capnocytophaga gingivalis ATCC 33624] Length = 428 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 50/144 (34%), Gaps = 32/144 (22%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I GP G+GK+ LA+I + +S+ FS A S + DI + Sbjct: 42 PSLIFWGPPGTGKTTLAHIIAKESQRAFFSLSAISSGIKDVR--------DIIEKSKREQ 93 Query: 125 QLF------------HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164 LF H N + L+ A T S+ V +P L SR Sbjct: 94 GLFTARNPIIFIDEIHRFNKTQQDSLLEAVERGWVTLIGATTENPSFEV-IPALLSR--- 149 Query: 165 ATVVKISLPDDDFLEKVIVKMFAD 188 V ++ + L ++ + Sbjct: 150 CQVYTLNPFSKEDLLALLTRAIEQ 173 >gi|213512913|ref|NP_001134065.1| 26S protease regulatory subunit 6A [Salmo salar] gi|209730462|gb|ACI66100.1| 26S protease regulatory subunit 6A [Salmo salar] Length = 427 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 73/201 (36%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 207 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 266 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + + ++N + Q + + ++ A Sbjct: 267 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNMQVKVIAATNRVDIL 326 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ +P+++ +++ R++ + + + R Sbjct: 327 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 380 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ ++ G T Sbjct: 381 GAQCKAVCVEAGMIALRRGAT 401 >gi|163847144|ref|YP_001635188.1| IstB ATP binding domain-containing protein [Chloroflexus aurantiacus J-10-fl] gi|222524981|ref|YP_002569452.1| IstB domain-containing protein ATP-binding protein [Chloroflexus sp. Y-400-fl] gi|163668433|gb|ABY34799.1| IstB domain protein ATP-binding protein [Chloroflexus aurantiacus J-10-fl] gi|222448860|gb|ACM53126.1| IstB domain protein ATP-binding protein [Chloroflexus sp. Y-400-fl] Length = 229 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 52/137 (37%), Gaps = 31/137 (22%) Query: 50 EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS-------------------RS 90 +A + W ++L G G GK+ LA ++++ RS Sbjct: 58 ARAYEYAQNPQGW----LVLFGGYGCGKTHLAAAIANEALDRHTPVLFTVVPDLLDHLRS 113 Query: 91 TRFSNIAKSLDS--ILIDTRKPVLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTAR 145 T N + D L+ ++L+D+ + + +L+ I+N + Y ++T+ Sbjct: 114 TFGPNSETAYDERFELVRDVPLLILDDLGTENTTPWAREKLYQIMNHRYNYALPTVITSN 173 Query: 146 TFPVSWGVCLPDLCSRL 162 P P + SR+ Sbjct: 174 RDPKDID---PRILSRM 187 >gi|156937486|ref|YP_001435282.1| ATPase AAA [Ignicoccus hospitalis KIN4/I] gi|156566470|gb|ABU81875.1| AAA family ATPase, CDC48 subfamily [Ignicoccus hospitalis KIN4/I] Length = 734 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 60/163 (36%), Gaps = 33/163 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109 P + V+L GP G+GK+ LA +++ + + L I + RK Sbjct: 218 PPKGVLLFGPPGTGKTMLAKALANEIDAHFIPINGPEIMSKYYGESEQRLREIFEEARKN 277 Query: 110 ---PVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + + +++ A P + Sbjct: 278 APSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLQERGRVVVIGATNRPNAIDPA 337 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L R V+I +P D ++ + R + + + + Sbjct: 338 L-----RRPGRLEVEIEIPLPDKKGRLEILQIHTRNMPLAEDV 375 Score = 39.7 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 20/32 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + ++L GP G+GK+ LA + +S++ + Sbjct: 491 PPKGILLFGPPGTGKTLLAKAAATESQANFIA 522 >gi|48257098|gb|AAH07562.2| VCP protein [Homo sapiens] Length = 644 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 75 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 134 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + ++++D + QL +++ + Q ++M A P S Sbjct: 135 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 194 Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181 + +PD RL+ + L DD LE+V Sbjct: 195 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 237 Score = 39.0 bits (90), Expect = 0.68, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 348 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 404 >gi|14488635|pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain Of Membrane Fusion Atpase P97 gi|47168996|pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH P47 C gi|47168997|pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH P47 C gi|47168998|pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH P47 C gi|47168999|pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH P47 C gi|47169000|pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH P47 C gi|47169001|pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH P47 C Length = 458 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + ++++D + QL +++ + Q ++M A P S Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356 Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181 + +PD RL+ + L DD LE+V Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399 >gi|261392480|emb|CAX50029.1| putative ATPase [Neisseria meningitidis 8013] Length = 436 Score = 47.1 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 56/134 (41%), Gaps = 20/134 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G GK+ LA I + + A S + D R + +I L T L Sbjct: 50 MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIRGAIDKAEIALQQGRATIL 107 Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 F H N Q D+ L L+T A T S+ V P L SR A V + Sbjct: 108 FVDEVHRFNKAQQ-DAFLPHVESGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQPL 162 Query: 174 DDDFLEKVIVKMFA 187 D L+K+I K+ A Sbjct: 163 SSDDLKKLIAKVLA 176 >gi|148824633|ref|YP_001289387.1| transposase [Mycobacterium tuberculosis F11] gi|215405462|ref|ZP_03417643.1| transposase [Mycobacterium tuberculosis 02_1987] gi|289747257|ref|ZP_06506635.1| transposase [Mycobacterium tuberculosis 02_1987] gi|148723160|gb|ABR07785.1| transposase [Mycobacterium tuberculosis F11] gi|289687785|gb|EFD55273.1| transposase [Mycobacterium tuberculosis 02_1987] Length = 694 Score = 47.1 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 26/122 (21%) Query: 51 QAVRLIDSWPSWPSRVVILVGPSGSGKSC----LANIWSDKSRSTRFSNIAKSLDSILID 106 A+R +D+ VIL GP G GK+ L + + + RF+ ++ L + Sbjct: 536 AALRWLDA-----GESVILHGPVGVGKTHVAQALVHAVARRGGDVRFAKTSRMLSDLAGG 590 Query: 107 TRK--------------PVLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPV 149 ++L+D + + L+ +I+ L++T+ P Sbjct: 591 HADRSWGQRIREYTKPLVLILDDFAMREHTAMHADDLYELISDRAITGKPLILTSNRAPN 650 Query: 150 SW 151 +W Sbjct: 651 NW 652 >gi|315126411|ref|YP_004068414.1| recombination factor protein RarA [Pseudoalteromonas sp. SM9913] gi|315014925|gb|ADT68263.1| recombination factor protein RarA [Pseudoalteromonas sp. SM9913] Length = 447 Score = 47.1 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 62/174 (35%), Gaps = 26/174 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA I ++ + + A + I +++ T + Sbjct: 52 LILWGPPGVGKTTLAQIIANHADAELIQMSAVTAGVKDIRDSVTQARDNLQS-RGQRTLM 110 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N + + + + A T S+ + L SR A V + Sbjct: 111 FVDEVHRFNKSQQDAFLPHIEDGTFIFVGATTENPSFALNNAIL-SR---ARVYVLKSLQ 166 Query: 175 DDFLEKVIVK------MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 + L VI + + +QI I + + S A K+++ ++ Sbjct: 167 ESDLYTVIERALKQDEQLSQKQIVIADNAKQAL---CQASGGDARKVLNLLEQA 217 >gi|240103746|ref|YP_002960055.1| AAA family ATPase, CDC48 subfamily (Cdc48) [Thermococcus gammatolerans EJ3] gi|239911300|gb|ACS34191.1| AAA family ATPase, CDC48 subfamily (Cdc48) [Thermococcus gammatolerans EJ3] Length = 796 Score = 47.1 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 32/215 (14%), Positives = 75/215 (34%), Gaps = 45/215 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106 P + ++L GP G+GK+ LA +++S + + NI + Sbjct: 550 PPKGILLYGPPGTGKTLLAKAVANESEANFIAIKGPEVLSKWVGESEKNIREIFRKARQA 609 Query: 107 TRKPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL ++ I + +++ A P Sbjct: 610 APTVIFIDEIDAIAPRRGTDVNRVTDRLINQLLTEMDGIQENSGVVVIGATNRPDILDPA 669 Query: 155 LPDLC----SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRME-RS 208 L L RL + + PD+ ++ + R++ + + + + +R E + Sbjct: 670 L--LRPGRFDRL-----ILVPAPDE--KARLEIFKVHTRKVPLAEDVNLEELAKRTEGYT 720 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 E +V + L+ + + +K + Sbjct: 721 GADIEAVVRE--AAMLAMRRALQEGIIRPGMKADE 753 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 67/187 (35%), Gaps = 47/187 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109 P + V+L GP G+GK+ LA ++++ + + + L + + + Sbjct: 215 PPKGVLLYGPPGTGKTLLAKAVANEANAHFIAINGPEIMSKYYGESEERLREVFKEAEEN 274 Query: 110 ---PVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + +++ A P + Sbjct: 275 APAIIFIDEIDAIAPKREETHGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDAID-- 332 Query: 155 LPDLC--SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 P L R ++ +PD ++++ R + I+ R Sbjct: 333 -PALRRPGRFDREL--EVGVPDKQGRKEILQ--IHTRGMPIEPD--------FRRD--KV 377 Query: 213 EKLVDKM 219 ++++K+ Sbjct: 378 IEILEKL 384 >gi|256073901|ref|XP_002573266.1| cell division control protein 48 aaa family protein [Schistosoma mansoni] gi|238658442|emb|CAZ29498.1| cell division control protein 48 aaa family protein (transitional endoplasmic reticulum atpase), putative [Schistosoma mansoni] Length = 596 Score = 47.1 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 66/164 (40%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A +++S S F SN+ K+ + + Sbjct: 234 PPRGILLYGPPGTGKTLVARAVANESGSFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 293 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + ++++D + QL +++ + Q ++M A P S Sbjct: 294 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRSHVIVMAATNRPNS---V 350 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + ++I +PD + ++ + R I + + + Sbjct: 351 DPALR-RFGRFDREIEIGIPD--SIGRLEILRIHTRNIRLAEDV 391 Score = 39.0 bits (90), Expect = 0.64, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 507 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDIFDKA 563 >gi|198428540|ref|XP_002121499.1| PREDICTED: similar to valosin containing protein [Ciona intestinalis] Length = 808 Score = 47.1 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 48/121 (39%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ ++ + + Sbjct: 238 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRRAFEEAEKN 297 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + ++++D + QL +++ + Q ++M A P S Sbjct: 298 APAIIFIDELDAIAPKRDKTHGEVERRIVSQLLTLMDGLKQRAHVVVMAATNRPNSIDAA 357 Query: 155 L 155 L Sbjct: 358 L 358 Score = 39.0 bits (90), Expect = 0.53, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S + ++ + + E D Sbjct: 511 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEMLTMWFGESEANVREVFDKA 567 >gi|332668079|ref|YP_004450867.1| Microtubule-severing ATPase [Haliscomenobacter hydrossis DSM 1100] gi|332336893|gb|AEE53994.1| Microtubule-severing ATPase [Haliscomenobacter hydrossis DSM 1100] Length = 446 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 56/166 (33%), Gaps = 40/166 (24%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK--------------PVL 112 ++L GP G GK+ LA + + +S + + + + + P + Sbjct: 205 ILLYGPPGCGKTHLARATAGQIKSNFMAVGINEILDMWLGQSEKNLHAIFQKARQIKPCV 264 Query: 113 L--EDIDLLDFNDTQL-----FHIINSI--------HQYDSSLLMTARTFPVSWG--VCL 155 L +++D L N + + H+IN D L++ A P Sbjct: 265 LFFDEVDALGANRSDMRMSAGRHLINQFLNELDGIEQSNDGVLVLAATNAPWHLDPAFRR 324 Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 P R ++ + PD+ ++ D+ K Y+ Sbjct: 325 P---GRFD--RIIFVPPPDEAGRTAILEIHLRDK----PVKDVDYL 361 >gi|292493395|ref|YP_003528834.1| ATPase AAA [Nitrosococcus halophilus Nc4] gi|291581990|gb|ADE16447.1| AAA ATPase central domain protein [Nitrosococcus halophilus Nc4] Length = 454 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 33/197 (16%), Positives = 71/197 (36%), Gaps = 34/197 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND--- 123 ++L GP G+GK+ LA + + ++ S A + ++ + + Sbjct: 66 MVLWGPPGTGKTTLARLIAHYCQAQFISLSAVLAGVKEVRA----AVDKAQRVRSEEGYG 121 Query: 124 TQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 T LF H N + + + + A T S+ + L SR V + Sbjct: 122 TVLFVDEVHRFNKSQQDAFLPYVENGTFIFIGATTENPSFELNNA-LLSR---CRVYVLK 177 Query: 172 LPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA- 223 + +I + AD R + + + L + + + A + ++ ++ + Sbjct: 178 CLRVGDICTLINRALADPEQGLGRRSLTMAETLCQRLAEAAD---GDARRALNLLEIASD 234 Query: 224 LSRGMGITRSLAAEVLK 240 L+ I L +VL+ Sbjct: 235 LAEKKTIPEELLNQVLR 251 >gi|56963348|ref|YP_175079.1| recombination factor protein RarA [Bacillus clausii KSM-K16] gi|56909591|dbj|BAD64118.1| AAA family ATPase [Bacillus clausii KSM-K16] Length = 420 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 64/169 (37%), Gaps = 27/169 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117 ++L GP G+GK+ +A + S ++ +++ + ++L+++ Sbjct: 43 MVLYGPPGTGKTSIARAIAGSSGMHFRMLNATVHHKKDMETAVEEAKMYGSLLLILDEVH 102 Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 L D L H+ + LL+ A T + P + SR + ++ + Sbjct: 103 RLDKAKQDFLLPHL-----ESGLLLLIGATTANPYHSIN-PAIRSR---CHIFELEQLEP 153 Query: 176 DFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVD 217 D +EK + + AD R + I + ++ + A ++ Sbjct: 154 DDIEKALRRALADEERGLGHEKIDIAPEALRHLALACGGDVRAALNALE 202 >gi|304407556|ref|ZP_07389208.1| AAA ATPase central domain protein [Paenibacillus curdlanolyticus YK9] gi|304343507|gb|EFM09349.1| AAA ATPase central domain protein [Paenibacillus curdlanolyticus YK9] Length = 438 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 33/200 (16%), Positives = 73/200 (36%), Gaps = 33/200 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 ++L GP G GK+ LA+I S ++ + K + ++ + + + F Sbjct: 54 ILLYGPPGCGKTTLAHIISKRTEADFVKLNAVDASVKDVRDVIDRAKTAKAMYGRKTILF 113 Query: 122 NDTQLFHIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 D H NS Q ++ T + L SR +T+ ++ Sbjct: 114 LDEV--HRFNSSRQDALLPAVEQGIIIFIGATTENPFHYVNGALLSR---STLFQLQPLT 168 Query: 175 DDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 + + +V+ AD R + ++ + +I Q + ++ ++ A++ Sbjct: 169 KEHAREAMVRALADASRGLGFMRLEVEAEALDHIAQTAG---GDIRRALNALELAAVTTP 225 Query: 228 M------GITRSLAAEVLKE 241 IT +A E +++ Sbjct: 226 SEPDGSVRITLEVAQESVRK 245 >gi|291298362|ref|YP_003509640.1| ATP-dependent metalloprotease FtsH [Stackebrandtia nassauensis DSM 44728] gi|290567582|gb|ADD40547.1| ATP-dependent metalloprotease FtsH [Stackebrandtia nassauensis DSM 44728] Length = 671 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 42/268 (15%), Positives = 87/268 (32%), Gaps = 62/268 (23%) Query: 22 KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRL--IDSWPSWPSRV----------VIL 69 K+K +Q+ + DD V A E L I + P++ V+L Sbjct: 164 KSKAKQITKD---TPKATFDD--VAGANEAVEELQEIKDFLQNPAKYQALGAKIPKGVLL 218 Query: 70 VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP----------------VLL 113 GP G+GK+ LA + ++ +S + + V + Sbjct: 219 FGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFQQAKENAPAIVFV 278 Query: 114 EDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCLPDL 158 ++ID + D + L + ++ +L+ A P L Sbjct: 279 DEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDNKGGVILIAATNRPDILDPAL--- 335 Query: 159 CSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVFAEK 214 L+ + + PD + + ++ R + I +R A Sbjct: 336 ---LRPGRFDRQIPVDAPDKEGRQAILQVHA--RGKPFAPNVDMETIARRTP-GFSGA-D 388 Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKET 242 L + ++ AL ++++ + L+E+ Sbjct: 389 LANVINEAALLTARANEKAISGDALEES 416 >gi|215428929|ref|ZP_03426848.1| transposase [Mycobacterium tuberculosis T92] gi|260188479|ref|ZP_05765953.1| transposase [Mycobacterium tuberculosis CPHL_A] gi|260202495|ref|ZP_05769986.1| transposase [Mycobacterium tuberculosis T46] gi|289444915|ref|ZP_06434659.1| transposase [Mycobacterium tuberculosis T46] gi|289417834|gb|EFD15074.1| transposase [Mycobacterium tuberculosis T46] Length = 694 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 26/122 (21%) Query: 51 QAVRLIDSWPSWPSRVVILVGPSGSGKSC----LANIWSDKSRSTRFSNIAKSLDSILID 106 A+R +D+ VIL GP G GK+ L + + + RF+ ++ L + Sbjct: 536 AALRWLDA-----GESVILHGPVGVGKTHVAQALVHAVARRGGDVRFAKTSRMLSDLAGG 590 Query: 107 TRK--------------PVLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPV 149 ++L+D + + L+ +I+ L++T+ P Sbjct: 591 HADRSWGQRIREYTKPLVLILDDFAMREHTAMHADDLYELISDRAITGKPLILTSNRAPN 650 Query: 150 SW 151 +W Sbjct: 651 NW 652 >gi|126465812|ref|YP_001040921.1| proteasome-activating nucleotidase [Staphylothermus marinus F1] gi|126014635|gb|ABN70013.1| Proteasome-activating nucleotidase [Staphylothermus marinus F1] Length = 402 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G GK+ LA + +S +T S + L I ++ E Sbjct: 166 PPKGVLLYGPPGCGKTLLAKAVAHESGATFISIVGSELVQKFIGEGARIVRE 217 >gi|220929355|ref|YP_002506264.1| recombination factor protein RarA [Clostridium cellulolyticum H10] gi|219999683|gb|ACL76284.1| AAA ATPase central domain protein [Clostridium cellulolyticum H10] Length = 432 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 70/182 (38%), Gaps = 33/182 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSR-------------STRFSNIAKSLDSILIDTRKPVL- 112 +IL GP G+GK+ LA I ++ ++ + A + +++L + VL Sbjct: 45 IILYGPPGTGKTSLARIIANTTQSTFEKLNAVTSGVADIKRIAADTQNTLLNPNGRTVLF 104 Query: 113 LEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++I + + L + S +L+ A T + V L SR +TV + Sbjct: 105 IDEIHRFNKSQQDALL----PFVEDGSIVLIGATTENPFFEVNKA-LISR---STVFMLK 156 Query: 172 LPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 + + +++ D R + I + Y+ + A ++ ++ L Sbjct: 157 PLESTDIRELLENALVDKERGLGNYKINITDEALGYLCEICS---GDARTALNSLELAVL 213 Query: 225 SR 226 + Sbjct: 214 TS 215 >gi|313157357|gb|EFR56780.1| recombination factor protein RarA [Alistipes sp. HGB5] Length = 424 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 45/192 (23%), Positives = 72/192 (37%), Gaps = 40/192 (20%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 IL GP G GK+ LA I + + F+ A + + ++E F D Sbjct: 40 PSFILWGPPGVGKTTLAKIVATQLERPFFTLSAVTSGVKDVRE----VIESAKKQRFFDA 95 Query: 125 Q---LF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 + LF H N + + L+ A T S+ V P L SR V Sbjct: 96 KPPFLFIDEIHRFNKSQQDSLLGAVEQGTVTLIGATTENPSFEVISP-LLSR---CQVYI 151 Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME-R--------SLVFAEKLVDKMD 220 + +D L+ ++ DR + D +L + +E R S A KL++ +D Sbjct: 152 LRPMEDKDLQTLL-----DRALTTDAELK---AREVEVRQTGALFKFSGGDARKLLNILD 203 Query: 221 NLALSRGMGITR 232 LA + +T Sbjct: 204 ILAGATDGKLTI 215 >gi|307174120|gb|EFN64778.1| Transitional endoplasmic reticulum ATPase TER94 [Camponotus floridanus] Length = 801 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 38/202 (18%), Positives = 76/202 (37%), Gaps = 54/202 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 235 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 294 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + ++++D + QL +++ + Q ++M A P S Sbjct: 295 SPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKQSSHVIVMAATNRPNSIDGA 354 Query: 155 L--------------PDLCSRLK--AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198 L PD RL+ + L DD LE++ A+ + LA Sbjct: 355 LRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLADDVDLEEI----AAETHGHVGADLA 410 Query: 199 AYIVQRMERSLVFAEKLVDKMD 220 + S +++ +KMD Sbjct: 411 SLC------SEAALQQIREKMD 426 Score = 40.5 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 508 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDVFDKA 564 >gi|215413335|ref|ZP_03422020.1| transposase [Mycobacterium tuberculosis 94_M4241A] gi|298526909|ref|ZP_07014318.1| transposase [Mycobacterium tuberculosis 94_M4241A] gi|298496703|gb|EFI31997.1| transposase [Mycobacterium tuberculosis 94_M4241A] Length = 694 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 26/122 (21%) Query: 51 QAVRLIDSWPSWPSRVVILVGPSGSGKSC----LANIWSDKSRSTRFSNIAKSLDSILID 106 A+R +D+ VIL GP G GK+ L + + + RF+ ++ L + Sbjct: 536 AALRWLDA-----GESVILHGPVGVGKTHVAQALVHAVARRGGDVRFAKTSRMLSDLAGG 590 Query: 107 TRK--------------PVLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPV 149 ++L+D + + L+ +I+ L++T+ P Sbjct: 591 HADRSWGQRIREYTKPLVLILDDFAMREHTAMHADDLYELISDRAITGKPLILTSNRAPN 650 Query: 150 SW 151 +W Sbjct: 651 NW 652 >gi|70606692|ref|YP_255562.1| replication factor C large subunit [Sulfolobus acidocaldarius DSM 639] gi|73914010|sp|Q4JAB1|RFCL_SULAC RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|68567340|gb|AAY80269.1| replication factor C [Sulfolobus acidocaldarius DSM 639] Length = 437 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 40/210 (19%), Positives = 85/210 (40%), Gaps = 30/210 (14%) Query: 55 LIDSWPSW--PSRVVILVGPSGSGKSCLANIWS----------DKSRSTRFSNIAKSLDS 102 I+SW + ++ V+L GP G GK+ LA + + S S +I + Sbjct: 30 WIESWLNGEPTAKAVLLYGPPGVGKTTLAEALARDYKLELLEMNASDSRNLRDIKDVAER 89 Query: 103 ILIDT------RKPVLLEDIDLL--DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 I K +LL++ID + + + I+ I + +++TA W Sbjct: 90 ASISGSLFGIKGKIILLDEIDGIYSRADAGAIPAILELIEKTKYPVILTANDP---WD-- 144 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 P L S A ++++ L++++ ++ +I + +I +E+S A Sbjct: 145 -PSLRSLRNAVKMIELKRLGKYPLKRLLKRICEKEKIVCIDEALDHI---IEQSEGDARY 200 Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 ++ + +A G +T E+++ + Sbjct: 201 CINMLQGIAEGYG-KVTLDNVKELVRRKDR 229 >gi|87301395|ref|ZP_01084236.1| ATPase [Synechococcus sp. WH 5701] gi|87284363|gb|EAQ76316.1| ATPase [Synechococcus sp. WH 5701] Length = 742 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 59/170 (34%), Gaps = 24/170 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA I + +R+ S A + + ++ T L Sbjct: 56 LILHGPPGVGKTTLARIIASSTRAHFTSLNAVLAGVKDLRVEVEAARQRLERHGLR-TLL 114 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N + + L+ A T + V L SR + + ++ + Sbjct: 115 FIDEVHRFNVAQQDALLPWVENGTVTLIGATTENPYFEVNKA-LVSR---SRLFRLQPLE 170 Query: 175 DDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 L ++ + AD R + + + A +++ ++ Sbjct: 171 PRDLRVLLERALADGERGYGGRPVELTPEAADHLLDVAGGDARSLLNALE 220 >gi|87308504|ref|ZP_01090644.1| hypothetical protein DSM3645_14130 [Blastopirellula marina DSM 3645] gi|87288596|gb|EAQ80490.1| hypothetical protein DSM3645_14130 [Blastopirellula marina DSM 3645] Length = 461 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 41/200 (20%), Positives = 77/200 (38%), Gaps = 40/200 (20%) Query: 65 RVVILVGPSGSGKSCLANIWSD--KSRSTRFSNIA---KSLDSILIDTRKPVLLEDIDLL 119 V+ GP G+GK+ LA + + +SR + + + K L +L + + + Sbjct: 65 NSVLFYGPPGTGKTTLAQLLARECRSRFEQLNAVTSGVKELREVLQKAKDEIAV------ 118 Query: 120 DFNDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 T LF H N + +L+ A T + V L SR + V Sbjct: 119 GGRRTLLFIDEIHRFNKSQQDALLPDVENGVVILVGATTSNPFFAVNSA-LVSR---SQV 174 Query: 168 VKISLPDDDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 + D ++++I + AD+ + I + ++ E S A + ++ ++ Sbjct: 175 FQFQPLSPDDIKQLIHRALADKSVGLGDIPVNIHEDALHFLA---EVSDGDARRALNALE 231 Query: 221 NLALSRG-MGI--TRSLAAE 237 LS + T+ LAAE Sbjct: 232 IGVLSSKERPVEFTQELAAE 251 >gi|282916895|ref|ZP_06324653.1| ATPase [Staphylococcus aureus subsp. aureus D139] gi|283770701|ref|ZP_06343593.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus H19] gi|282319382|gb|EFB49734.1| ATPase [Staphylococcus aureus subsp. aureus D139] gi|283460848|gb|EFC07938.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus H19] Length = 424 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 73/201 (36%), Gaps = 40/201 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117 +I GP G GK+ +A S ++ + ++ ++ + + +LL++I Sbjct: 43 MIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIH 102 Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 L D L H+ N +L+ T + P + SR A + ++ Sbjct: 103 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 151 Query: 174 DDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 +D+ + + + + D Q ID+ Y + S ++ ++ LS Sbjct: 152 NDEDVRQALTRAIEDEENGLKTYQPKIDEDAMTYFSTQ---SQGDVRSALNALELAVLSA 208 Query: 227 G------MGITRSLAAEVLKE 241 +T A + L++ Sbjct: 209 DNDKDGYRQVTLQDAKDCLQK 229 >gi|269218537|ref|ZP_06162391.1| replication-associated recombination protein A [Actinomyces sp. oral taxon 848 str. F0332] gi|269211648|gb|EEZ77988.1| replication-associated recombination protein A [Actinomyces sp. oral taxon 848 str. F0332] Length = 456 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 43/204 (21%), Positives = 74/204 (36%), Gaps = 34/204 (16%) Query: 54 RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTR 108 RL ++ PS V L GP G+GK+ A + + S K L +++ R Sbjct: 59 RLAEASGGAPSSVF-LWGPPGTGKTTFAYLIARAGNRHFEEVSAVSAGVKELRAVVSAAR 117 Query: 109 KPVLLEDIDLLDFNDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLP 156 + + +T LF H N + L+ A T S+ V P Sbjct: 118 QRLA------TSGRETVLFVDEVHRFNRAQQDALLPAVENGWVTLVAATTENPSFTVVSP 171 Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFAD-RQ----IFIDKKLAAYIVQRMERSLVF 211 L SR + +V + ++ + ++ + D R + I +V+ R Sbjct: 172 -LLSR---SLLVTLKGLAEEDIRTLVARALEDERGFAGRLSIAADALDNLVRIAGRDGRR 227 Query: 212 AEKLVDKMDNLALSRGMGITRSLA 235 + L++ A +RG T LA Sbjct: 228 SLTLLEAAAEGARTRG-ETTIELA 250 >gi|32450569|gb|AAH54164.1| Psmc3-prov protein [Xenopus laevis] Length = 423 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 73/201 (36%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 203 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 262 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + + ++N + Q + + ++ A Sbjct: 263 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNMQVKVIAATNRVDIL 322 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ +P+++ +++ R++ + + + R Sbjct: 323 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 376 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ ++ G T Sbjct: 377 GAQCKAVCVEAGMIALRRGAT 397 >gi|86147114|ref|ZP_01065431.1| hypothetical protein MED222_12378 [Vibrio sp. MED222] gi|85835179|gb|EAQ53320.1| hypothetical protein MED222_12378 [Vibrio sp. MED222] Length = 449 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 43/202 (21%), Positives = 71/202 (35%), Gaps = 44/202 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G+GK+ LA + ++ + + R S + + I I K + T Sbjct: 54 MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKDIRIAIEKA----RENKQAGRRT 109 Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N Q D ++ T L SR A V K+ Sbjct: 110 ILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKL 163 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL------ 224 + + + + VI + D+Q + A + ++R +LV+ ++L Sbjct: 164 TSLNTEDISLVIRQAIEDKQRGLGDVSADFADNVLDR----LAELVNGDARMSLNYLELL 219 Query: 225 --------SRGMGITRSLAAEV 238 IT L AEV Sbjct: 220 YDMAEDNDKGEKAITLQLLAEV 241 >gi|117920496|ref|YP_869688.1| recombination factor protein RarA [Shewanella sp. ANA-3] gi|117612828|gb|ABK48282.1| Recombination protein MgsA [Shewanella sp. ANA-3] Length = 443 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 36/177 (20%), Positives = 63/177 (35%), Gaps = 34/177 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLD---F 121 ++L GP G+GK+ LA + + S + R S + + I +E + Sbjct: 52 MMLWGPPGTGKTTLAELIAHYSNAHVERISAVTSGVKDIR------AAIEQAQAVAQSRG 105 Query: 122 NDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 T LF H N + + + + A T S+ + L SR A V Sbjct: 106 QRTLLFVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEINNA-LLSR---ARVYL 161 Query: 170 ISLPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 I D + +I + D RQ+ + + + Q + A L++ M Sbjct: 162 IKRLSQDEIVHIITQALTDPERGLGQRQLVMPTDVLNKLAQLCDGDARKALNLLELM 218 >gi|224045116|ref|XP_002197546.1| PREDICTED: Werner helicase interacting protein 1 [Taeniopygia guttata] Length = 632 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 55/148 (37%), Gaps = 28/148 (18%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA+I ++ S+ + S S + + D+ N+ Sbjct: 227 PSLILWGPPGCGKTTLAHIIANSSKKNGMRFVTLSATSAKTND-----VRDVISQAQNEK 281 Query: 125 QLF-----------HIINSIHQY--------DSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 +LF H N Q + L+ A T S+ V L SR Sbjct: 282 RLFKRKTILFIDEIHRFNKSQQDTFLPHVECGTVTLIGATTENPSFQVNAA-LLSR---C 337 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFI 193 V+ + + +E ++++ + + Sbjct: 338 RVIVLEKLSAEAMEAILMRAVRFLGLQV 365 >gi|215432394|ref|ZP_03430313.1| transposase [Mycobacterium tuberculosis EAS054] Length = 694 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 26/122 (21%) Query: 51 QAVRLIDSWPSWPSRVVILVGPSGSGKSC----LANIWSDKSRSTRFSNIAKSLDSILID 106 A+R +D+ VIL GP G GK+ L + + + RF+ ++ L + Sbjct: 536 AALRWLDA-----GESVILHGPVGVGKTHVAQALVHAVARRGGDVRFAKTSRMLSDLAGG 590 Query: 107 TRK--------------PVLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPV 149 ++L+D + + L+ +I+ L++T+ P Sbjct: 591 HADRSWGQRIREYTKPLVLILDDFAMREHTAMHADDLYELISDRAITGKPLILTSNRAPN 650 Query: 150 SW 151 +W Sbjct: 651 NW 652 >gi|304408765|ref|ZP_07390386.1| AAA ATPase central domain protein [Shewanella baltica OS183] gi|307302768|ref|ZP_07582523.1| AAA ATPase central domain protein [Shewanella baltica BA175] gi|304352586|gb|EFM16983.1| AAA ATPase central domain protein [Shewanella baltica OS183] gi|306913128|gb|EFN43550.1| AAA ATPase central domain protein [Shewanella baltica BA175] Length = 443 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 39/196 (19%), Positives = 72/196 (36%), Gaps = 35/196 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLD---F 121 ++L GP G+GK+ LA + + S + R S + + I +E + Sbjct: 52 MMLWGPPGTGKTTLAELIAHYSNAHVERISAVTSGVKDIR------AAIEQAKAVAESRG 105 Query: 122 NDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 T LF H N + + + + A T S+ + L SR A V Sbjct: 106 QRTLLFVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEINNA-LLSR---ARVYL 161 Query: 170 ISLPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 I D + ++ + +D RQ + + + Q + A L++ M ++ Sbjct: 162 IKRLSHDEIAHIVTQALSDTERGLGQRQFVMPTDVLTTLAQLCDGDARKALNLIELMSDM 221 Query: 223 ALSRGMGITRSLAAEV 238 L+ G T + +V Sbjct: 222 -LADGGTFTTEMLIQV 236 >gi|212695462|ref|ZP_03303590.1| hypothetical protein BACDOR_05016 [Bacteroides dorei DSM 17855] gi|212661983|gb|EEB22557.1| hypothetical protein BACDOR_05016 [Bacteroides dorei DSM 17855] Length = 226 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 24/117 (20%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDTR 108 +IL+GPSG+GK+ LA + + +++ I+ I Sbjct: 94 LILMGPSGTGKTFLAAGLVFDAVKAGYKAYLMTMEDIVNCLRLKDISTPAMMTYNKILRA 153 Query: 109 KPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD--LCS 160 + + ++DI L T F++IN++H+ +S+++T P W L D L S Sbjct: 154 QLLAIDDIMLFPVKREEATAFFNLINTLHE-KTSIIITTNKAPTEWVETLNDEILAS 209 >gi|15893618|ref|NP_346967.1| recombination factor protein RarA [Clostridium acetobutylicum ATCC 824] gi|15023171|gb|AAK78307.1|AE007547_4 ATPase related to the helicase subunit of Holliday junction resolvase [Clostridium acetobutylicum ATCC 824] gi|325507740|gb|ADZ19376.1| recombination factor protein RarA [Clostridium acetobutylicum EA 2018] Length = 443 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 36/182 (19%), Positives = 64/182 (35%), Gaps = 33/182 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLD-------------SILIDTRKPVLL 113 +IL GP G GK+ LA I + ++ A + L R + + Sbjct: 54 MILWGPPGVGKTTLAMIIASTTKCNFVEFSAATSGIKEIKDIMIKAEKDRLFGIRTLLFI 113 Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 ++I + + F H+ + +L+ A T S+ V L SR V + Sbjct: 114 DEIHRFNKSQQDTFLPHV-----EKGDIILIGATTENPSFEVNSA-LLSR---CRVFVLK 164 Query: 172 LPDDDFLEKVIVKMFAD-RQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 ++ + K++ D R I I + L I S A ++ ++ LS Sbjct: 165 PLSNNDIVKLLKNALTDTRGFKNKNIQISEDLLTLIAVY---SNGDARTALNVLEMAVLS 221 Query: 226 RG 227 Sbjct: 222 SK 223 >gi|332031336|gb|EGI70849.1| Transitional endoplasmic reticulum ATPase TER94 [Acromyrmex echinatior] Length = 832 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 38/202 (18%), Positives = 76/202 (37%), Gaps = 54/202 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 266 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 325 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + ++++D + QL +++ + Q ++M A P S Sbjct: 326 SPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKQSSHVIVMAATNRPNSIDGA 385 Query: 155 L--------------PDLCSRLK--AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198 L PD RL+ + L DD LE++ A+ + LA Sbjct: 386 LRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLADDVDLEEI----AAETHGHVGADLA 441 Query: 199 AYIVQRMERSLVFAEKLVDKMD 220 + S +++ +KMD Sbjct: 442 SLC------SEAALQQIREKMD 457 Score = 40.5 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 539 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDVFDKA 595 >gi|322490717|emb|CBZ25980.1| Transitional endoplasmic reticulum ATPase,putative [Leishmania mexicana MHOM/GT/2001/U1103] Length = 785 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 67/184 (36%), Gaps = 54/184 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP GSGK+ +A ++++ + F SN+ K+ + + Sbjct: 227 PPRGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 286 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148 + +++ID + QL +++ + ++M A P Sbjct: 287 APAIIFIDEIDSIAPKREKAQGEVEKRIVSQLLTLMDGMKSRSQVIVMAATNRPNTIDPA 346 Query: 149 --------VSWGVCLPDLCSRLKAATVVKIS-----LPDDDFLEKVIVKMFADRQIFIDK 195 + +PD RL+ +++I L DD L K+ D F+ Sbjct: 347 LRRFGRFDRELDIGVPDETGRLE---IIRIHTKNMKLADDIDL----EKVAKDSHGFVGA 399 Query: 196 KLAA 199 LA Sbjct: 400 DLAQ 403 Score = 37.8 bits (87), Expect = 1.4, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 24/57 (42%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P + V+ GP G GK+ LA + + ++ S L ++ + + + D Sbjct: 500 PPKGVLFYGPPGCGKTLLAKAIATECQANFISIKGPELLTMWFGESEANVRDVFDKA 556 >gi|240103779|ref|YP_002960088.1| AAA family ATPase, CDC48 subfamily (Cdc48) [Thermococcus gammatolerans EJ3] gi|239911333|gb|ACS34224.1| AAA family ATPase, CDC48 subfamily (Cdc48) [Thermococcus gammatolerans EJ3] Length = 838 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 41/217 (18%), Positives = 79/217 (36%), Gaps = 47/217 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRKP 110 P + ++L GP G+GK+ LA +++S + + K + I R+ Sbjct: 579 PPKGILLYGPPGTGKTLLAKAVANESEANFIAIRGPEVLSKWVGETEKRIREIFRKARQA 638 Query: 111 ----VLLEDIDLLDFND------TQLFHIINS-------IHQYDSSLLMTARTFPVSWGV 153 V +++ID + L +IN I + +++ A P Sbjct: 639 APTVVFIDEIDAIAPARGSYEGGRHLDTLINQLLTEMDGIQENSGVVVIGATNRPDIIDP 698 Query: 154 CLPDLC----SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRME-R 207 L L RL + + PD+ + I K+ R + + + + A + ++ E Sbjct: 699 AL--LRPGRFDRL-----ILVPAPDEKARLE-IFKVHTRR-VPLAEDVDLAELAKKTEGY 749 Query: 208 SLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 S E LV AL L E++++ + Sbjct: 750 SGADIEALVR---EAALIALRRAVSRLPREIVEKQGE 783 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 33/204 (16%), Positives = 75/204 (36%), Gaps = 51/204 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109 P + V+L GP G+GK+ LA ++++ + + + L I + + Sbjct: 244 PPKGVLLYGPPGTGKTLLAKAVANEANAHFIAINGPEIMSKFYGESEERLREIFKEAEEN 303 Query: 110 ---PVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + +++ A P + Sbjct: 304 APSIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKGRGKVIVIAATNRPDAID-- 361 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 P L + +++ +PD ++++ R + ++ S E+ Sbjct: 362 -PALRRPGRFDREIEVGVPDKQGRKEILQ--IHTRGMPLEP------------SFDK-EE 405 Query: 215 LVDKMDNLALSRGMGITRSLAAEV 238 ++ +D LA G T A EV Sbjct: 406 VLTVLDRLA---GR--TDKFAEEV 424 >gi|209865725|gb|ACC66148.3| cell division cycle protein [Dimocarpus longan] gi|221327637|gb|ACM17483.1| cell division cycle protein [Dimocarpus longan] Length = 805 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 26/164 (15%), Positives = 62/164 (37%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP GSGK+ +A ++++ + F SN+ K+ + + Sbjct: 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN 300 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + +++ A P Sbjct: 301 APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP---NTI 357 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PD+ +V+ + + + + Sbjct: 358 DPALR-RFGRFDREIDIGVPDEVGRLEVL--RIHTKNMKLSDDV 398 Score = 39.7 bits (92), Expect = 0.33, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 514 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 570 >gi|15677127|ref|NP_274280.1| recombination factor protein RarA [Neisseria meningitidis MC58] gi|7226497|gb|AAF41636.1| conserved hypothetical protein [Neisseria meningitidis MC58] gi|254671375|emb|CBA08828.1| conserved hypothetical protein [Neisseria meningitidis alpha153] gi|316984713|gb|EFV63674.1| magnesium chelatase, subunit ChlI family protein [Neisseria meningitidis H44/76] gi|325134496|gb|EGC57141.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis M13399] gi|325140513|gb|EGC63034.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis CU385] gi|325200112|gb|ADY95567.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis H44/76] Length = 436 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 20/134 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G GK+ LA I + + A S + D R+ + +I L T L Sbjct: 50 MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIREAIDKAEIALQQGRATIL 107 Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 F H N Q D+ L L+T A T S+ V P L SR A V + Sbjct: 108 FVDEVHRFNKAQQ-DAFLPHVESGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQPL 162 Query: 174 DDDFLEKVIVKMFA 187 D L+K+I K+ A Sbjct: 163 SSDDLKKLIAKVLA 176 >gi|71004206|ref|XP_756769.1| hypothetical protein UM00622.1 [Ustilago maydis 521] gi|46095658|gb|EAK80891.1| hypothetical protein UM00622.1 [Ustilago maydis 521] Length = 478 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 32/214 (14%), Positives = 69/214 (32%), Gaps = 61/214 (28%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V+L GP G+GK+ A ++++ +T I L + ++ Sbjct: 253 PPKGVLLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTK 312 Query: 113 ------LEDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSW 151 +++D + + +IN + ++ A P + Sbjct: 313 KACIIFFDEVDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDARGNIKVLMATNRPDTL 372 Query: 152 GVCLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM----- 205 L L RL V+ LPD+D ++ R + ++K + +++ R+ Sbjct: 373 DPAL--LRPGRLD--RRVEFGLPDNDGRANILRIHA--RSMSVEKDIRYHLIARLCPNAT 426 Query: 206 ------------------ERSLVFAEKLVDKMDN 221 R + +D +D Sbjct: 427 GAELRSVATEAGMFAIRARRKMATERDFLDAVDK 460 >gi|313668375|ref|YP_004048659.1| AAA ATPase [Neisseria lactamica ST-640] gi|313005837|emb|CBN87292.1| putative AAA ATPase [Neisseria lactamica 020-06] Length = 436 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 41/152 (26%), Positives = 59/152 (38%), Gaps = 21/152 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G GK+ LA I + + A S + D R + +I L T L Sbjct: 50 MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIRGAIDKAEIALQQGRATIL 107 Query: 127 F----HIINSIHQY------DSSLL--MTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N Q + LL + A T S+ V P L SR A V + Sbjct: 108 FVDEVHRFNKAQQDAFLPYVERGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQPLS 163 Query: 175 DDFLEKVIVKMFAD---RQIFIDKKLAAYIVQ 203 D L+K++ K+ A R I+ +V Sbjct: 164 SDGLKKLVAKVLALPEYRDFTIEADAQELLVN 195 >gi|218884001|ref|YP_002428383.1| replication factor C large subunit [Desulfurococcus kamchatkensis 1221n] gi|218765617|gb|ACL11016.1| replication factor C large subunit [Desulfurococcus kamchatkensis 1221n] Length = 426 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 39/205 (19%), Positives = 77/205 (37%), Gaps = 29/205 (14%) Query: 53 VRLIDSWPSW-PSRVV-ILVGPSGSGKSCLANIWS----------DKSRSTRFSNIA--- 97 + + SW PS+ +L GP G GK+ L + + S + R +I Sbjct: 31 LEWLSSWEKGKPSKKAALLHGPPGCGKTSLVEALARSKGYQLLEMNASDARRKEDIERIV 90 Query: 98 --KSLDSILIDTRKPVLLEDIDLLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 S L +RK +LL+++D +D + + ++ I + ++MTA Sbjct: 91 KLASRSGALTGSRKIILLDEVDGMDVRADAGGVEALVEVIKVSANPIIMTANNPYSQMLR 150 Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213 L +L K P D V+ ++ + ++ + + I +R E Sbjct: 151 PLREL----SEMIAFKRLTPRDVV--TVLKRICSAEKLVCEDQALDEIAKRSE---GDLR 201 Query: 214 KLVDKMDNLALSRGMGITRSLAAEV 238 ++ ++ +A + IT L Sbjct: 202 SAINDLEAMAGASER-ITLGLVKSF 225 >gi|113970302|ref|YP_734095.1| recombination factor protein RarA [Shewanella sp. MR-4] gi|113884986|gb|ABI39038.1| Recombination protein MgsA [Shewanella sp. MR-4] Length = 443 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 36/177 (20%), Positives = 63/177 (35%), Gaps = 34/177 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLD---F 121 ++L GP G+GK+ LA + + S + R S + + I +E + Sbjct: 52 MMLWGPPGTGKTTLAELIAHYSNAHVERISAVTSGVKDIR------AAIEQAQAVAQSRG 105 Query: 122 NDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 T LF H N + + + + A T S+ + L SR A V Sbjct: 106 QRTLLFVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEINNA-LLSR---ARVYL 161 Query: 170 ISLPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 I D + +I + D RQ+ + + + Q + A L++ M Sbjct: 162 IKRLSQDEIVHIITQALTDTERGLGQRQLVMPTDVLNKLAQLCDGDARKALNLLELM 218 >gi|321450672|gb|EFX62597.1| hypothetical protein DAPPUDRAFT_300935 [Daphnia pulex] Length = 405 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 51/155 (32%), Gaps = 32/155 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P R +L GP G GK+ LA+ + + F A L + Sbjct: 214 PPRGFLLHGPPGCGKTLLAHAIAGELEIPFFKVAAPELVSGVSGESEEQIRFLFEQATSS 273 Query: 107 TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 + +++ID + + + + ++ C+ DL SR + Sbjct: 274 APCIIFIDEIDAITPKRET------AQREMERRIV-------AQLLTCMDDLSSRDRNIP 320 Query: 167 VVKISLPD--DDFLEKVIVKMFADRQIFID-KKLA 198 V+ I + D + DR+I + LA Sbjct: 321 VLVIGATNRPDALDPALRRAGRFDREISLGIPDLA 355 >gi|298529786|ref|ZP_07017189.1| AAA ATPase central domain protein [Desulfonatronospira thiodismutans ASO3-1] gi|298511222|gb|EFI35125.1| AAA ATPase central domain protein [Desulfonatronospira thiodismutans ASO3-1] Length = 400 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 34/207 (16%), Positives = 73/207 (35%), Gaps = 17/207 (8%) Query: 26 EQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 Q + S +D + S + +R + + + GP G GKS LA I + Sbjct: 1 MQKPLAEKIRPQ-SIEDFVGQSHLRTRLRAMGQSQR--LQSTLFFGPPGCGKSTLALIIA 57 Query: 86 DKSR--STRFSNIAKSLDSIL--IDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLL 141 R S L + ++ + ++L+++ F + + +L Sbjct: 58 GNQGKSHLRLSAPEIGLAELRKKLEGLEILILDELHRFSKAQQDFFLP---LLETGEIIL 114 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 + T S+ V L SR+ V+++ L ++ + + + I +K + Sbjct: 115 LATTTENPSFSVTRQ-LLSRMN---VLRLRSLSMPELRQIGERAVKELDVSIPEKSLDLL 170 Query: 202 VQRME---RSLVFAEKLVDKMDNLALS 225 R+ + + V ++D L Sbjct: 171 ASLSGGDARTFLNLMEYVRELDQENLE 197 >gi|327259659|ref|XP_003214653.1| PREDICTED: 26S protease regulatory subunit 6A-like [Anolis carolinensis] Length = 422 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 25/183 (13%), Positives = 68/183 (37%), Gaps = 38/183 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 202 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 261 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + + ++N + Q ++ + ++ A Sbjct: 262 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 321 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ +P+++ +++ R++ + + + R Sbjct: 322 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 375 Query: 211 FAE 213 A+ Sbjct: 376 GAQ 378 >gi|322801676|gb|EFZ22299.1| hypothetical protein SINV_06607 [Solenopsis invicta] Length = 793 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 38/202 (18%), Positives = 76/202 (37%), Gaps = 54/202 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 227 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 286 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + ++++D + QL +++ + Q ++M A P S Sbjct: 287 SPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKQSSHVIVMAATNRPNSIDGA 346 Query: 155 L--------------PDLCSRLK--AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198 L PD RL+ + L DD LE++ A+ + LA Sbjct: 347 LRRFGRFDREIDIGIPDATGRLEILRIHTKNMKLADDVDLEEI----AAETHGHVGADLA 402 Query: 199 AYIVQRMERSLVFAEKLVDKMD 220 + S +++ +KMD Sbjct: 403 SLC------SEAALQQIREKMD 418 Score = 40.5 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 500 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDVFDKA 556 >gi|296197531|ref|XP_002746323.1| PREDICTED: ATPase WRNIP1-like isoform 2 [Callithrix jacchus] Length = 641 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 16/88 (18%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA+I ++ S+ + S + + + D+ N+ Sbjct: 263 PSLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 317 Query: 125 QLF-----------HIINSIHQYDSSLL 141 F H N Q +++LL Sbjct: 318 SFFKRKTILFIDEIHRFNKSQQVNAALL 345 >gi|327398442|ref|YP_004339311.1| AAA ATPase central domain-containing protein [Hippea maritima DSM 10411] gi|327181071|gb|AEA33252.1| AAA ATPase central domain protein [Hippea maritima DSM 10411] Length = 370 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 24/164 (14%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRF---------SNIAKSLDSILIDTRKPVLLED 115 ++L GP G GK+ A + + K R F + +L + V++++ Sbjct: 36 PSLVLFGPPGVGKTTYAKLLAKKHRLDFFYLNATDCPTKTLKDTLKKGSKEAPILVVIDE 95 Query: 116 IDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 I D + + S +++ TF + + L SR V + ++ Sbjct: 96 IHRFDKKQQDVLLPF---LEDGSVVMVGTSTFNPYFRLTKA-LRSR---CFVYEFKRLNE 148 Query: 176 DFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 L K A R I ID+ L +V A KL++ + Sbjct: 149 SDL-----KRLAKRFIEIDEHLLDKLVLHAS---GDARKLINMI 184 >gi|228950427|ref|ZP_04112587.1| Prophage LambdaBa02, DNA replication protein DnaC [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809242|gb|EEM55703.1| Prophage LambdaBa02, DNA replication protein DnaC [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 161 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 45/116 (38%), Gaps = 24/116 (20%) Query: 61 SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL---------------- 104 W ++L G G+GK+ LA ++ + + +S+ +L Sbjct: 6 EWNGESLMLWGEPGNGKTHLAAAIVNELSKKGYIVVFQSVPELLQRIRSTFNSENKENET 65 Query: 105 -----IDTRKPVLLEDIDL---LDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWG 152 + ++L+DI ++ + +LF+II+ ++ + L T+ P Sbjct: 66 QIMRALLECDLLILDDIGAEKTTEWVEEKLFNIIDGRYRKELPTLYTSNLEPKELK 121 >gi|219849221|ref|YP_002463654.1| IstB domain-containing protein ATP-binding protein [Chloroflexus aggregans DSM 9485] gi|219543480|gb|ACL25218.1| IstB domain protein ATP-binding protein [Chloroflexus aggregans DSM 9485] Length = 241 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 48/137 (35%), Gaps = 31/137 (22%) Query: 50 EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRF---------------- 93 +A + W +IL G G GK+ LA ++++ Sbjct: 72 ARAFEYAQNPQGW----LILFGGYGCGKTHLAAAIANEALERHMPVLFTVVPDLLDHLRS 127 Query: 94 -----SNIAKSLDSILIDTRKPVLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTAR 145 S A L+ ++L+D+ + + +L+ I+N + Y ++T+ Sbjct: 128 TFGPNSETAYDERFELVRDVALLILDDLGTENTTPWAREKLYQIMNHRYNYALPTVITSN 187 Query: 146 TFPVSWGVCLPDLCSRL 162 P P + SR+ Sbjct: 188 RDPKDID---PRILSRM 201 >gi|26344299|dbj|BAC35806.1| unnamed protein product [Mus musculus] Length = 698 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 59/167 (35%), Gaps = 42/167 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P R V+L GP G GK+ LA+ + + A + D + + Sbjct: 139 PPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFDQAVSN 198 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151 V +++ID + QL + N++ L++ A P S Sbjct: 199 APCIVFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSL 258 Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDK 195 L +A V + +PD+ E+++ + R++ + + Sbjct: 259 DPALR------RAGRFDREVCLGIPDEAARERILQTLC--RKLRLPE 297 Score = 36.3 bits (83), Expect = 3.5, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 22/46 (47%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 ++L GP G GK+ LA +++S S L ++ + + + Sbjct: 460 ILLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAV 505 >gi|326492542|dbj|BAK02054.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 593 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 67/175 (38%), Gaps = 38/175 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP GSGK+ +A ++++ + F SN+ K+ + + Sbjct: 25 PPKGILLFGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 84 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + ++M A P S Sbjct: 85 APSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPA 144 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 L R + + I +PD+ +V+ + + + + + ++ + R Sbjct: 145 LR----RFGRFDREIDIGVPDEVGRLEVL--RIHTKNMKLAEDVE---LEHISRD 190 Score = 39.4 bits (91), Expect = 0.49, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 298 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARG 356 >gi|224140199|ref|XP_002323472.1| predicted protein [Populus trichocarpa] gi|222868102|gb|EEF05233.1| predicted protein [Populus trichocarpa] Length = 802 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 64/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP GSGK+ +A ++++ + F SN+ K+ + + Sbjct: 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN 300 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + ++M A P S Sbjct: 301 APSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSID-- 358 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PD+ +V+ + + + + + Sbjct: 359 -PALR-RFGRFDREIDIGVPDEVGRLEVL--RIHTKNMKLAEDV 398 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 514 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 570 >gi|123226008|emb|CAM19024.1| proteasome (prosome, macropain) 26S subunit ATPase 3 [Mus musculus] Length = 400 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 180 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 239 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + + ++N + Q ++ + ++ A Sbjct: 240 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 299 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ +P+++ +++ R++ + + + R Sbjct: 300 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 353 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ ++ G T Sbjct: 354 GAQCKAVCVEAGMIALRRGAT 374 >gi|332246197|ref|XP_003272239.1| PREDICTED: ATPase WRNIP1 isoform 4 [Nomascus leucogenys] Length = 613 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 16/88 (18%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA+I ++ S+ + S + + + D+ N+ Sbjct: 235 PSLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 289 Query: 125 QLF-----------HIINSIHQYDSSLL 141 F H N Q +++LL Sbjct: 290 SFFKRKTILFIDEIHRFNKSQQVNAALL 317 >gi|218768257|ref|YP_002342769.1| recombination factor protein RarA [Neisseria meningitidis Z2491] gi|121052265|emb|CAM08593.1| hypothetical protein NMA1433 [Neisseria meningitidis Z2491] Length = 436 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 20/134 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G GK+ LA I + + A S + D R+ + +I L T L Sbjct: 50 MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIREAIDKAEIALQQGRATIL 107 Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 F H N Q D+ L L+T A T S+ V P L SR A V + Sbjct: 108 FVDEVHRFNKAQQ-DAFLPHVESGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQPL 162 Query: 174 DDDFLEKVIVKMFA 187 D L+K+I K+ A Sbjct: 163 SSDDLKKLIAKVLA 176 >gi|218184617|gb|EEC67044.1| hypothetical protein OsI_33786 [Oryza sativa Indica Group] Length = 755 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 64/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP GSGK+ +A ++++ + F SN+ K+ + + Sbjct: 243 PPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 302 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + ++M A P S Sbjct: 303 APSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKARSHVIVMGATNRPNSID-- 360 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PD+ +V+ + + + + + Sbjct: 361 -PALR-RFGRFDREIDIGVPDEVGRLEVL--RIHTKNMKLAEDV 400 Score = 39.0 bits (90), Expect = 0.64, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E Sbjct: 516 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRE 567 >gi|47226685|emb|CAG07844.1| unnamed protein product [Tetraodon nigroviridis] Length = 797 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 44/163 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 231 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 290 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + ++++D + QL +++ + Q ++M A P S Sbjct: 291 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 350 Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181 + +PD RL+ + L DD LE+V Sbjct: 351 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 393 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 29/63 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 504 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARML 563 Query: 123 DTQ 125 +++ Sbjct: 564 ESE 566 >gi|307109661|gb|EFN57898.1| 26S protease regulatory subunit 7 [Chlorella variabilis] Length = 421 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 25/143 (17%), Positives = 47/143 (32%), Gaps = 44/143 (30%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V+L GP G+GK+ LA ++++ + I L + ++ Sbjct: 197 PPKGVLLYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARAK 256 Query: 113 ------LEDIDLLDFN-----------DTQLFHIINSIHQYDSS----LLMTARTF---- 147 +++D + + I+N + +D+ +LM Sbjct: 257 KACIIFFDEVDAIGGARHDDASGDSEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 316 Query: 148 PVSW---------GVCLPDLCSR 161 P LPDL SR Sbjct: 317 PALLRPGRLDRKVEFGLPDLESR 339 >gi|297832876|ref|XP_002884320.1| hypothetical protein ARALYDRAFT_896213 [Arabidopsis lyrata subsp. lyrata] gi|297330160|gb|EFH60579.1| hypothetical protein ARALYDRAFT_896213 [Arabidopsis lyrata subsp. lyrata] Length = 616 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 78/212 (36%), Gaps = 37/212 (17%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110 R V+LVGP G+GK+ LA + ++ FS A + + Sbjct: 362 RGVLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFVELFVGRGAARIRDLFNAARKNSP 421 Query: 111 --VLLEDIDLLDF-------ND-----TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL- 155 + ++++D + ++ QL ++ +++ A P + L Sbjct: 422 SIIFIDELDAVGGKRGRSFNDERDQTLNQLLTEMDGFESDTKVIVIAATNRPEALDSALC 481 Query: 156 -PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 P SR V ++ PD + K++ D + D L +V + V A Sbjct: 482 RPGRFSR-----KVVVAEPDQEGRRKILAVHLRDVPLEEDAFLICDLVASLTPGFVGA-D 535 Query: 215 LVDKMDNLALSRGMGITRSLAAE-VLKETQQC 245 L + ++ AL ++A E +++ ++ Sbjct: 536 LANIVNEAALLAARRGGEAVAREDIMEAIERA 567 >gi|297527311|ref|YP_003669335.1| AAA family ATPase, CDC48 subfamily [Staphylothermus hellenicus DSM 12710] gi|297256227|gb|ADI32436.1| AAA family ATPase, CDC48 subfamily [Staphylothermus hellenicus DSM 12710] Length = 734 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 23/163 (14%), Positives = 60/163 (36%), Gaps = 33/163 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTR-- 108 P + ++L GP G+GK+ LA +++ + + + L I + Sbjct: 222 PPKGILLHGPPGTGKTLLAKALANEIGAYFTAINGPEIMSKFYGESEQRLREIFEEAERN 281 Query: 109 --KPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + + +++ A P + Sbjct: 282 APAIIFIDEIDSIAPKREEVTGEVEKRVVAQLLALMDGLKERGKVIVIGATNRPEALD-- 339 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L + ++I PD +++ R + +++ + Sbjct: 340 -PALRRPGRFDREIEIPPPDKRARREILAVH--TRNMPLEEDV 379 Score = 37.1 bits (85), Expect = 2.4, Method: Composition-based stats. Identities = 9/28 (32%), Positives = 17/28 (60%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS 94 ++L GP G+GK+ LA + +S + + Sbjct: 500 ILLFGPPGTGKTLLAKAVATESGANFIA 527 >gi|228475177|ref|ZP_04059903.1| recombination factor protein RarA [Staphylococcus hominis SK119] gi|228270788|gb|EEK12190.1| recombination factor protein RarA [Staphylococcus hominis SK119] Length = 422 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 32/200 (16%), Positives = 70/200 (35%), Gaps = 39/200 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117 +I GP G GK+ +A + + + ++ ++ + + +LL++I Sbjct: 43 MIFYGPPGIGKTSIAKAIAGSTEYKFRQLNAVTNTKKDMQMIVEEAKMSGQVILLLDEIH 102 Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 L D L H+ N +L+ T + P + SR + ++ Sbjct: 103 RLDKAKQDFLLPHLEN-----GKIILIGATTSNPYHAIN---PAIRSR---VQIFELYPL 151 Query: 174 DDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 D+ + + + + D Q ID+ Y + S ++ ++ LS Sbjct: 152 DEKDVYQALTRALNDDQNGLKLYQPKIDEDALKYFSTQ---SHGDVRSALNALELAVLSA 208 Query: 227 G-----MGITRSLAAEVLKE 241 +T A + L++ Sbjct: 209 KVSNNQRHVTLEDAKDCLQK 228 >gi|240170720|ref|ZP_04749379.1| recombination factor protein RarA [Mycobacterium kansasii ATCC 12478] Length = 446 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 69/176 (39%), Gaps = 30/176 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVL--------L 113 VIL GP GSGK+ LA + S + S K + +++ R+ +L + Sbjct: 64 VILYGPPGSGKTTLAALVSQATGRRFEALSALSAGVKDVRAVIEGARRGLLAGEQTVLFI 123 Query: 114 EDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +++ L S + LL+ A T S+ V P L SR + ++++ Sbjct: 124 DEVHRFSKTQQDALL----SAVENRVVLLVAATTENPSFAVVAP-LLSR---SLILQLRP 175 Query: 173 PDDDFLEKVIVKMFAD-RQ----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 D + V+ + D R + + + +VQ + A + + ++ A Sbjct: 176 LTSDDIRIVVQRAIEDPRGFGGRVVVTPEAVELLVQ---LAAGDARRALTALEVAA 228 >gi|168031055|ref|XP_001768037.1| predicted protein [Physcomitrella patens subsp. patens] gi|162680675|gb|EDQ67109.1| predicted protein [Physcomitrella patens subsp. patens] Length = 812 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 64/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP GSGK+ +A ++++ + F SN+ K+ + + Sbjct: 241 PPKGILLFGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 300 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + ++M A P S Sbjct: 301 APAIIFIDEIDSIAPKREKTQGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSID-- 358 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PD+ +V+ + + + + + Sbjct: 359 -PALR-RFGRFDREIDIGVPDEVGRLEVL--RIHSKNMKLAEDV 398 Score = 38.6 bits (89), Expect = 0.83, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 514 PSKGVLFYGPPGCGKTMLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARG 572 >gi|156370042|ref|XP_001628281.1| predicted protein [Nematostella vectensis] gi|156215254|gb|EDO36218.1| predicted protein [Nematostella vectensis] Length = 807 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 50/121 (41%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 232 PPRGILLFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 291 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + Q ++M A P S V Sbjct: 292 SPAIIFIDEIDAIAPKRDKTHGEVERRIVSQLLTLMDGLKQRSHVIVMAATNRPNSVDVA 351 Query: 155 L 155 L Sbjct: 352 L 352 Score = 39.0 bits (90), Expect = 0.53, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 505 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKA 561 >gi|157787079|ref|NP_001099450.1| nuclear valosin-containing protein-like [Rattus norvegicus] gi|149040892|gb|EDL94849.1| nuclear VCP-like (predicted) [Rattus norvegicus] Length = 855 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 59/167 (35%), Gaps = 42/167 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P R V+L GP G GK+ LA+ + + A + D + + Sbjct: 296 PPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRDLFDQAVSN 355 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151 V +++ID + QL + N++ L++ A P S Sbjct: 356 APCIVFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVAATARVLVVGATNRPDSL 415 Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDK 195 L +A V + +PD+ E+++ + R++ + + Sbjct: 416 DPALR------RAGRFDREVCLGIPDEASRERILQTLC--RKLRLPE 454 >gi|325144597|gb|EGC66896.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis M01-240013] Length = 436 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 20/134 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G GK+ LA I + + A S + D R+ + +I L T L Sbjct: 50 MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIREAIDKAEIALQQGRATIL 107 Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 F H N Q D+ L L+T A T S+ V P L SR A V + Sbjct: 108 FVDEVHRFNKAQQ-DAFLPHVESGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQPL 162 Query: 174 DDDFLEKVIVKMFA 187 D L+K+I K+ A Sbjct: 163 SSDDLKKLIAKVLA 176 >gi|254673529|emb|CBA08975.1| conserved hypothetical protein [Neisseria meningitidis alpha275] Length = 436 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 20/134 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G GK+ LA I + + A S + D R+ + +I L T L Sbjct: 50 MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIREAIDKAEIALQQGRATIL 107 Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 F H N Q D+ L L+T A T S+ V P L SR A V + Sbjct: 108 FVDEVHRFNKAQQ-DAFLPHVESGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQPL 162 Query: 174 DDDFLEKVIVKMFA 187 D L+K+I K+ A Sbjct: 163 SSDDLKKLIAKVLA 176 >gi|221632702|ref|YP_002521923.1| putative chromosome replication initiation protein [Thermomicrobium roseum DSM 5159] gi|221155787|gb|ACM04914.1| putative chromosome replication initiation protein [Thermomicrobium roseum DSM 5159] Length = 215 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 50/145 (34%), Gaps = 36/145 (24%) Query: 47 SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS--------------------D 86 + A R+ + P ++L+G G GK+ LA + D Sbjct: 53 PGVADAYRIALEYARNPDGWLLLMGGFGCGKTHLAAAIANYVLHHQRLFPLFTVVPDLLD 112 Query: 87 KSRSTRFSNIAKSLDSIL--IDTRKPVLLEDI---DLLDFNDTQLFHIINSIHQYDSSLL 141 R+T + S D+ + ++L+D+ + +LF IIN + + Sbjct: 113 YLRATFAPDRTDSYDNRFEQVRNAGLLVLDDLGTEHTTPWATEKLFQIINYRYNQRKPTV 172 Query: 142 MTARTFPVSWGVCLPDL----CSRL 162 +T L DL SRL Sbjct: 173 ITTNR-------DLDDLDERIRSRL 190 >gi|219109539|ref|XP_002176524.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217411059|gb|EEC50987.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 431 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 28/205 (13%), Positives = 70/205 (34%), Gaps = 44/205 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI----------------- 105 P + V+L GP G+GK+ LA ++++ + L + I Sbjct: 205 PPKGVLLHGPPGTGKTLLARACANQTNAVFLKLAGPQLVQMFIGDGAKMIRDAFELAKAK 264 Query: 106 -----DTRKPVLLEDIDLL-----DFNDT----------QLFHIINSIHQYDSSLLMTAR 145 + + +++ID + + + +L ++ + ++ A Sbjct: 265 IKQGVASGAILFIDEIDAIGTKRFGGDQSGDREVQRTMLELLSQLDGFSSNEMIKVIAAT 324 Query: 146 TFPVSWGVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 P L L S RL +++ P+++ K++ R++ + ++ + R Sbjct: 325 NRPDVLDPAL--LRSGRLD--RKIELPHPNEEARAKIMRIHA--RKMNVSSEVVYEELAR 378 Query: 205 MERSLVFAEKLVDKMDNLALSRGMG 229 A+ ++ L+ Sbjct: 379 SCEDFNGAQLKAVCVEAGMLALRRE 403 >gi|149022609|gb|EDL79503.1| proteasome (prosome, macropain) 26S subunit, ATPase 3, isoform CRA_b [Rattus norvegicus] Length = 407 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 25/183 (13%), Positives = 68/183 (37%), Gaps = 38/183 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 222 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 281 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + + ++N + Q ++ + ++ A Sbjct: 282 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 341 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ +P+++ +++ R++ + + + R Sbjct: 342 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 395 Query: 211 FAE 213 A+ Sbjct: 396 GAQ 398 >gi|149725086|ref|XP_001491930.1| PREDICTED: similar to proteasome (prosome, macropain) 26S subunit ATPase 3 isoform 2 [Equus caballus] Length = 381 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 161 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 220 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + + ++N + Q ++ + ++ A Sbjct: 221 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 280 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ +P+++ +++ R++ + + + R Sbjct: 281 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 334 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ ++ G T Sbjct: 335 GAQCKAVCVEAGMIALRRGAT 355 >gi|307211146|gb|EFN87364.1| Transitional endoplasmic reticulum ATPase TER94 [Harpegnathos saltator] Length = 796 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 49/121 (40%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 235 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 294 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + ++++D + QL +++ + Q ++M A P S Sbjct: 295 SPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKQSSHVIVMAATNRPNSIDGA 354 Query: 155 L 155 L Sbjct: 355 L 355 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 503 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDVFDKA 559 >gi|300087740|ref|YP_003758262.1| IstB domain-containing protein ATP-binding protein [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527473|gb|ADJ25941.1| IstB domain protein ATP-binding protein [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 439 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 53/137 (38%), Gaps = 20/137 (14%) Query: 5 KEDYSFFVP-----DKQKNDQPKNK---------EEQLFF---SFPRCLGISRDDLLVHS 47 K DYS +P + + + QL F + S D L Sbjct: 28 KTDYSRIIPCQCISGQTGESPKRQRLLDYSRLGNMRQLTFENFNLDFRKDTSAPDKLE-- 85 Query: 48 AIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107 + A + ++ S P V++++GPSG+GK+ LA ++K T I S +L + Sbjct: 86 -LTTAFEMSLNFASDPRGVLLIIGPSGAGKTHLAAAITNKLIETGKPVIYMSTPDLLDEL 144 Query: 108 RKPVLLEDIDLLDFNDT 124 R + D D+ + Sbjct: 145 RTNLPYHDRDIPAIFEQ 161 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 32/150 (21%), Positives = 55/150 (36%), Gaps = 30/150 (20%) Query: 52 AVRLIDSWPSWPSRVVILVGPSGSGKSCLANI-------------------WSDKSRSTR 92 A +L + P +IL G +G GK+ LA + D RST Sbjct: 273 AYKLAQDFSKMPEGWLILQGVTGCGKTHLAAAIVNYRYSIGLPAIFSVVPEFLDHLRSTF 332 Query: 93 FSNIAKSLDSIL--IDTRKPVLLEDIDLLD---FNDTQLFHIINSIHQYDSSLLMTARTF 147 + S D+I I T ++ +D + +L+ +I+ + ++T R Sbjct: 333 TPDSPVSYDNIFDRIKTAPFLVFDDFGEHATSPWAREKLYQVISYRYNAQLPTVITTRVA 392 Query: 148 PVSWGVCLPDLCSRL---KAATVVKISLPD 174 P + SR + + V I+ PD Sbjct: 393 LDELE---PPISSRFIDHQFSLVFNITAPD 419 >gi|289576159|ref|ZP_06456386.1| LOW QUALITY PROTEIN: transposase [Mycobacterium tuberculosis K85] gi|289540590|gb|EFD45168.1| LOW QUALITY PROTEIN: transposase [Mycobacterium tuberculosis K85] Length = 644 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 26/122 (21%) Query: 51 QAVRLIDSWPSWPSRVVILVGPSGSGKSC----LANIWSDKSRSTRFSNIAKSLDSILID 106 A+R +D+ VIL GP G GK+ L + + + RF+ ++ L + Sbjct: 486 AALRWLDA-----GESVILHGPVGVGKTHVAQALVHAVARRGGDVRFAKTSRMLSDLAGG 540 Query: 107 TRK--------------PVLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPV 149 ++L+D + + L+ +I+ L++T+ P Sbjct: 541 HADRSWGQRIREYTKPLVLILDDFAMREHTAMHADDLYELISDRAITGKPLILTSNRAPN 600 Query: 150 SW 151 +W Sbjct: 601 NW 602 >gi|297527514|ref|YP_003669538.1| 26S proteasome subunit P45 family [Staphylothermus hellenicus DSM 12710] gi|297256430|gb|ADI32639.1| 26S proteasome subunit P45 family [Staphylothermus hellenicus DSM 12710] Length = 402 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G GK+ LA + +S +T S + L I ++ E Sbjct: 166 PPKGVLLYGPPGCGKTLLAKAVAHESGATFISIVGSELVQKFIGEGARIVRE 217 >gi|224069527|ref|XP_002326365.1| predicted protein [Populus trichocarpa] gi|222833558|gb|EEE72035.1| predicted protein [Populus trichocarpa] Length = 810 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 64/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP GSGK+ +A ++++ + F SN+ K+ + + Sbjct: 243 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN 302 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + ++M A P S Sbjct: 303 APSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSID-- 360 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PD+ +V+ + + + + + Sbjct: 361 -PALR-RFGRFDREIDIGVPDEVGRLEVL--RIHTKNMRLAEDV 400 Score = 39.4 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 516 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 572 >gi|315231037|ref|YP_004071473.1| cell division FtsH-like protein [Thermococcus barophilus MP] gi|315184065|gb|ADT84250.1| cell division FtsH-like protein [Thermococcus barophilus MP] Length = 796 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 28/195 (14%), Positives = 74/195 (37%), Gaps = 40/195 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109 P + V+L GP G+GK+ LA ++++ + + + L + + + Sbjct: 215 PPKGVLLYGPPGTGKTLLAKAVANEANAHFIAINGPEIMSKYYGESEERLREVFKEAEEN 274 Query: 110 ---PVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + +++ A P + Sbjct: 275 APSIIFIDEIDAIAPKRGEVTGEVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDALD-- 332 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM-------ER 207 P L + +++ +PD ++++ R + I+ + V+R+ ER Sbjct: 333 -PALRRPGRFDREIEVGVPDRQGRKEILQ--IHTRGMPIEPEFRKSEVKRILEGLRGDER 389 Query: 208 SLVFAEKLVDKMDNL 222 + ++K++ Sbjct: 390 FRDIINRAIEKVERA 404 Score = 44.4 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 31/192 (16%), Positives = 64/192 (33%), Gaps = 48/192 (25%) Query: 45 VHSAIEQAVRLIDSWPSW-------PSRVVILVGPSGSGKSCLANIWSDKSRSTRF---- 93 V A+ +AV +P P + ++L GP G+GK+ LA + +S + Sbjct: 525 VKEALREAVEWPLKYPEAFQALGINPPKGILLYGPPGTGKTLLAKAVATESEANFIGIRG 584 Query: 94 ------------SNIAKSLDSILIDTRKPVLLEDIDLLDFND------------TQLFHI 129 NI + + +++ID + QL Sbjct: 585 PEVLSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGTDVNRVTDRLINQLLTE 644 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPDLC----SRLKAATVVKISLPDDDFLEKVIVKM 185 ++ I + +++ A P L L RL + + PD+ ++ Sbjct: 645 MDGIEENSGVVVIAATNRPDILDPAL--LRPGRFDRL-----ILVPAPDEKARYEIFKVH 697 Query: 186 FADRQIFIDKKL 197 R++ + + + Sbjct: 698 --TRKMPLSEDV 707 >gi|150401347|ref|YP_001325113.1| AAA family ATPase, CDC48 subfamily protein [Methanococcus aeolicus Nankai-3] gi|150014050|gb|ABR56501.1| AAA family ATPase, CDC48 subfamily [Methanococcus aeolicus Nankai-3] Length = 723 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 47/121 (38%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + V+L GP G+GK+ LA ++++ + + N+ K + + Sbjct: 209 PPKGVLLAGPPGTGKTLLAKAVANEAGANFYTINGPEIMSKYVGETEENLRKIFEDAEEE 268 Query: 107 TRKPVLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + ++ QL +++ + +++ A P S Sbjct: 269 APSIIFIDEIDSVAPKRDEASGEVERRMVAQLLTLMDGLGGRGQVVVIAATNRPDSLDGA 328 Query: 155 L 155 L Sbjct: 329 L 329 Score = 37.8 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 21/32 (65%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + V+L GP G+GK+ LA +++S++ S Sbjct: 481 PPKGVLLFGPPGTGKTMLAKAVANESQANFIS 512 >gi|114605196|ref|XP_001159500.1| PREDICTED: ATPase WRNIP1 isoform 1 [Pan troglodytes] Length = 640 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 16/88 (18%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA+I + S+ + S + + + D+ N+ Sbjct: 262 PSLILWGPPGCGKTTLAHIIASNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 316 Query: 125 QLF-----------HIINSIHQYDSSLL 141 F H N Q +++LL Sbjct: 317 SFFKRKTILFIDEIHRFNKSQQVNAALL 344 >gi|297483981|ref|XP_002694038.1| PREDICTED: nuclear VCP-like [Bos taurus] gi|296479315|gb|DAA21430.1| nuclear VCP-like [Bos taurus] Length = 864 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 58/167 (34%), Gaps = 42/167 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P R V+L GP G GK+ LA+ + + A + + + Sbjct: 296 PPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAATEIVSGVSGESEQKLRELFEQAVSS 355 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151 + +++ID + QL + N++ L++ A P S Sbjct: 356 APCILFIDEIDAITPKREIASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSL 415 Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDK 195 L +A + + +PD+ E+++ + R++ + + Sbjct: 416 DPALR------RAGRFDREICLGIPDEASRERILQTLC--RKLRLPE 454 >gi|229581482|ref|YP_002839881.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus Y.N.15.51] gi|228012198|gb|ACP47959.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus Y.N.15.51] Length = 769 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 52/142 (36%), Gaps = 42/142 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTRKP 110 P + ++L GP G GK+ LA ++++ + + + L I D +K Sbjct: 225 PPKGILLYGPPGVGKTLLAKAIANETDAYFTSINGPEIMSKFYGESEQRLREIFEDAKKH 284 Query: 111 ----VLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPV----- 149 + +++ID + ++ QL +++ + + +++ A P Sbjct: 285 APAIIFVDEIDAIAPKRDEVIGEVERRVVAQLLTLMDGLENRGNVIVIAATNRPSAVDPA 344 Query: 150 ---------SWGVCLPDLCSRL 162 + LPD RL Sbjct: 345 LRRPGRFDREIEIPLPDKQGRL 366 Score = 38.2 bits (88), Expect = 1.1, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 19/32 (59%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + ++L GP G+GK+ LA + +S + + Sbjct: 498 PPKGILLFGPPGTGKTMLAKAVATESGANFIA 529 >gi|328783535|ref|XP_392892.3| PREDICTED: transitional endoplasmic reticulum ATPase TER94 isoform 1 [Apis mellifera] Length = 811 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 36/202 (17%), Positives = 76/202 (37%), Gaps = 54/202 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 234 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 293 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148 + + ++++D + QL +++ + Q ++M A P Sbjct: 294 SPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKQSSHVIVMAATNRPNSIDPA 353 Query: 149 --------VSWGVCLPDLCSRLK--AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198 + +PD RL+ + L DD LE++ A+ + LA Sbjct: 354 LRRFGRFDKEIDIGIPDATGRLEILRIHTKNMKLADDVELEEI----AAETHGHVGADLA 409 Query: 199 AYIVQRMERSLVFAEKLVDKMD 220 + S +++ +KMD Sbjct: 410 SLC------SEAALQQIREKMD 425 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 507 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDVFDKA 563 >gi|282164972|ref|YP_003357357.1| Holliday junction ATP-dependent DNA helicase RuvB [Methanocella paludicola SANAE] gi|282157286|dbj|BAI62374.1| Holliday junction ATP-dependent DNA helicase RuvB [Methanocella paludicola SANAE] Length = 344 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 32/204 (15%), Positives = 76/204 (37%), Gaps = 25/204 (12%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P V+L GP G GK+ LA+I + + + +++ +++ D++ + Sbjct: 64 PLDHVLLYGPPGLGKTTLAHIIAREMGANIRITSGPAIERPGDLAAILTNIKEGDVIFID 123 Query: 123 DT-QLFHI-----INSIHQYDSSLLMTARTFPVSWGVCLPD----------------LCS 160 + +L H+ ++ Y+ +++ S + LP L Sbjct: 124 EIHRLSHVVEEVMYPAMEDYEIDIIIGKGPSARSIRLELPKFTLVGATTRAGLLTSPLRD 183 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM- 219 R + P D L+ +I + + + + + + I +R + A +L+ ++ Sbjct: 184 RFGMSMRFDFYEPRD--LKTIIDRSASILGVELSEDGSMEIAKRSRGTPRIANRLLRRVR 241 Query: 220 DNLALSRGMGITRSLAAEVLKETQ 243 D ++ I R + + L Sbjct: 242 DFASVGNKKVIDREIVNDSLNRLD 265 >gi|256826951|ref|YP_003150910.1| Recombination protein MgsA [Cryptobacterium curtum DSM 15641] gi|256583094|gb|ACU94228.1| Recombination protein MgsA [Cryptobacterium curtum DSM 15641] Length = 435 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 35/196 (17%), Positives = 79/196 (40%), Gaps = 31/196 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKP------------VL 112 VIL GP+G+GK+ +A+I ++ +++ S I ++ + + + Sbjct: 56 VILYGPAGTGKTSIAHIIAESTKAEFVEVSAIGGTVSDLRREIAAAEKRLTSHGMRTILF 115 Query: 113 LEDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++I + L H + +L+ A T + V L SR + +V+++ Sbjct: 116 VDEIHRFNRSQQDALLH----AVEDRVVVLVGATTENPFFEVNSA-LLSR---SRIVELT 167 Query: 172 LPDDDFLEKVIVKMFAD-RQIF----IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 D+ + V+ + D R + +D + I M+ S A + ++ Sbjct: 168 SLSDEEIASVVQRALVDERGLAGAYSLDDEALDAI---MQVSGGDARSALTTLELACDMA 224 Query: 227 GMGITRSLAAEVLKET 242 T ++ A ++K+ Sbjct: 225 RAEDTHAITAAMVKKA 240 >gi|159041543|ref|YP_001540795.1| AAA family ATPase, CDC48 subfamily protein [Caldivirga maquilingensis IC-167] gi|157920378|gb|ABW01805.1| AAA family ATPase, CDC48 subfamily [Caldivirga maquilingensis IC-167] Length = 852 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 26/159 (16%), Positives = 56/159 (35%), Gaps = 46/159 (28%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106 P + V+L+GP G+GK+ LA ++++ + S + + D + Sbjct: 213 PPKGVLLIGPPGTGKTLLAKAVANEADAYFVSINGPEIVSKYYGESEARLREIFDEAKRN 272 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148 + +++ID + QL +++ + + +++ A P Sbjct: 273 APAIIFIDEIDSIAPKREEVTGEVEKRIVAQLLTLMDGLQERGQVVVIGATNRPDAVDPA 332 Query: 149 --------VSWGVCLPDLCSRLK----AATVVKISLPDD 175 + +PD +RL V + PDD Sbjct: 333 LRRPGRFDREINIGMPDKRARLDILSIHTRGVPLCTPDD 371 Score = 39.7 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 20/32 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + ++L GP G+GK+ LA +++S + + Sbjct: 507 PPKGILLFGPPGTGKTLLAKAVANESGANFIA 538 >gi|115450773|ref|NP_001048987.1| Os03g0151800 [Oryza sativa Japonica Group] gi|108706222|gb|ABF94017.1| Cell division cycle protein 48, putative, expressed [Oryza sativa Japonica Group] gi|113547458|dbj|BAF10901.1| Os03g0151800 [Oryza sativa Japonica Group] gi|125542437|gb|EAY88576.1| hypothetical protein OsI_10049 [Oryza sativa Indica Group] gi|125584947|gb|EAZ25611.1| hypothetical protein OsJ_09438 [Oryza sativa Japonica Group] gi|215704352|dbj|BAG93786.1| unnamed protein product [Oryza sativa Japonica Group] gi|215704409|dbj|BAG93843.1| unnamed protein product [Oryza sativa Japonica Group] gi|215704637|dbj|BAG94265.1| unnamed protein product [Oryza sativa Japonica Group] gi|215704711|dbj|BAG94339.1| unnamed protein product [Oryza sativa Japonica Group] Length = 809 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 64/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP GSGK+ +A ++++ + F SN+ K+ + + Sbjct: 243 PPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 302 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + ++M A P S Sbjct: 303 APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKARSHVIVMGATNRPNSID-- 360 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PD+ +V+ + + + + + Sbjct: 361 -PALR-RFGRFDREIDIGVPDEVGRLEVL--RIHTKNMKLAEDV 400 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 516 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 572 >gi|338700|gb|AAA36666.1| tat binding protein-1 (tbp-1) [Homo sapiens] Length = 404 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 25/183 (13%), Positives = 68/183 (37%), Gaps = 38/183 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 184 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 243 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + + ++N + Q ++ + ++ A Sbjct: 244 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 303 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ +P+++ +++ R++ + + + R Sbjct: 304 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 357 Query: 211 FAE 213 A+ Sbjct: 358 GAQ 360 >gi|312897412|ref|ZP_07756836.1| recombination factor protein RarA [Megasphaera micronuciformis F0359] gi|310621473|gb|EFQ05009.1| recombination factor protein RarA [Megasphaera micronuciformis F0359] Length = 443 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 59/154 (38%), Gaps = 28/154 (18%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 +I GP G GK+ LA + + +++ FS + + I +K D + Sbjct: 51 PSMIFWGPPGVGKTTLARVIAGHTKAAFVDFSAVTGGIKEIRQIMQKA----DENTRYGE 106 Query: 123 DTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 T LF H N + S +L+ A T S+ + L SR V + Sbjct: 107 KTILFVDEIHRFNKAQQDAFLPFVEKGSIVLIGATTENPSFEINGA-LLSR---CKVFVL 162 Query: 171 SLPDDDFLEKVIVKMFAD------RQIFIDKKLA 198 D +++++ + A+ R+I ID L Sbjct: 163 HALTADDIKELLKRALAEPEGFGTREIRIDDDLL 196 >gi|303388207|ref|XP_003072338.1| Cdc48-like AAA ATPase [Encephalitozoon intestinalis ATCC 50506] gi|303301477|gb|ADM10978.1| Cdc48-like AAA ATPase [Encephalitozoon intestinalis ATCC 50506] Length = 780 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 65/166 (39%), Gaps = 39/166 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 241 PPKGILLYGPPGTGKTLIARAIANETGAFLFLINGPEIMSKMAGESESNLRKAFEEAEKN 300 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID L QL +++ + + +++ A P S Sbjct: 301 SPSIIFIDEIDALAPKREKSQGEVERRIVSQLLTLMDGMKARSNVIVLGATNRPNSIDSA 360 Query: 155 LPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L + ++I +PD+ +++ + + + + + Sbjct: 361 LR------RYGRFDREIEIGVPDETGRLEIL--RIHTKNMKMSEDV 398 Score = 43.6 bits (102), Expect = 0.024, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 54/164 (32%), Gaps = 47/164 (28%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL-------------DSILIDTRK 109 P++ V+ GP G GK+ LA + + ++ S L D Sbjct: 514 PAKGVLFYGPPGCGKTLLAKAVATECKANFISIKGPELLSMWVGESESNIRDLFARARGA 573 Query: 110 PVLL---EDIDLLD----FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 + ++ID + ND QL ++ I+Q + ++ A P Sbjct: 574 APCVLFFDEIDSIAKARSGNDGSSGVTDRMLNQLLSEMDGINQKKNVFVIGATNRPDQLD 633 Query: 153 --------------VCLPDLCSR---LKAATVVKISLPDDDFLE 179 + LPDL SR L+A PD D + Sbjct: 634 SALMRPGRLDQLVYIPLPDLESRVSILQATLKKTPLSPDIDLRQ 677 >gi|227828221|ref|YP_002830001.1| ATPase AAA [Sulfolobus islandicus M.14.25] gi|227830979|ref|YP_002832759.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus L.S.2.15] gi|229579858|ref|YP_002838257.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus Y.G.57.14] gi|229585449|ref|YP_002843951.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.16.27] gi|238620412|ref|YP_002915238.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.16.4] gi|284998468|ref|YP_003420236.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus L.D.8.5] gi|227457427|gb|ACP36114.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus L.S.2.15] gi|227460017|gb|ACP38703.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.14.25] gi|228010573|gb|ACP46335.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus Y.G.57.14] gi|228020499|gb|ACP55906.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.16.27] gi|238381482|gb|ACR42570.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.16.4] gi|284446364|gb|ADB87866.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus L.D.8.5] Length = 769 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 52/142 (36%), Gaps = 42/142 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTRKP 110 P + ++L GP G GK+ LA ++++ + + + L I D +K Sbjct: 225 PPKGILLYGPPGVGKTLLAKAIANETDAYFTSINGPEIMSKFYGESEQRLREIFEDAKKH 284 Query: 111 ----VLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPV----- 149 + +++ID + ++ QL +++ + + +++ A P Sbjct: 285 APAIIFVDEIDAIAPKRDEVIGEVERRVVAQLLTLMDGLENRGNVIVIAATNRPSAVDPA 344 Query: 150 ---------SWGVCLPDLCSRL 162 + LPD RL Sbjct: 345 LRRPGRFDREIEIPLPDKQGRL 366 Score = 38.2 bits (88), Expect = 1.1, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 19/32 (59%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + ++L GP G+GK+ LA + +S + + Sbjct: 498 PPKGILLFGPPGTGKTMLAKAVATESGANFIA 529 >gi|289449125|ref|ZP_06438869.1| transposase [Mycobacterium tuberculosis CPHL_A] gi|289422083|gb|EFD19284.1| transposase [Mycobacterium tuberculosis CPHL_A] Length = 724 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 26/122 (21%) Query: 51 QAVRLIDSWPSWPSRVVILVGPSGSGKSC----LANIWSDKSRSTRFSNIAKSLDSILID 106 A+R +D+ VIL GP G GK+ L + + + RF+ ++ L + Sbjct: 566 AALRWLDA-----GESVILHGPVGVGKTHVAQALVHAVARRGGDVRFAKTSRMLSDLAGG 620 Query: 107 TRK--------------PVLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPV 149 ++L+D + + L+ +I+ L++T+ P Sbjct: 621 HADRSWGQRIREYTKPLVLILDDFAMREHTAMHADDLYELISDRAITGKPLILTSNRAPN 680 Query: 150 SW 151 +W Sbjct: 681 NW 682 >gi|110289141|gb|AAP53974.2| Cell division cycle protein 48, putative, expressed [Oryza sativa Japonica Group] gi|222612898|gb|EEE51030.1| hypothetical protein OsJ_31677 [Oryza sativa Japonica Group] Length = 808 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 64/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP GSGK+ +A ++++ + F SN+ K+ + + Sbjct: 243 PPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 302 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + ++M A P S Sbjct: 303 APSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKARSHVIVMGATNRPNSID-- 360 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PD+ +V+ + + + + + Sbjct: 361 -PALR-RFGRFDREIDIGVPDEVGRLEVL--RIHTKNMKLAEDV 400 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 516 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 572 >gi|319410506|emb|CBY90869.1| putative ATPase [Neisseria meningitidis WUE 2594] Length = 436 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 20/134 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G GK+ LA I + + A S + D R+ + +I L T L Sbjct: 50 MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIREAIDKAEIALQQGRATIL 107 Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 F H N Q D+ L L+T A T S+ V P L SR A V + Sbjct: 108 FVDEVHRFNKAQQ-DAFLPHVESGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQPL 162 Query: 174 DDDFLEKVIVKMFA 187 D L+K+I K+ A Sbjct: 163 SSDDLKKLIAKVLA 176 >gi|307263100|ref|ZP_07544722.1| Replication-associated recombination protein A [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|306871726|gb|EFN03448.1| Replication-associated recombination protein A [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 443 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 41/205 (20%), Positives = 73/205 (35%), Gaps = 35/205 (17%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 S +I GP G+GK+ LA I + + R S + + I + ++ Sbjct: 46 SHSMIFWGPPGTGKTTLAEIIAHHFDAEVERLSAVTSGVKEIREAIERA----KLNRQTG 101 Query: 122 NDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATV 167 T LF H N Q D +++ T L SR A + Sbjct: 102 RRTLLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNA---LLSR---AKI 155 Query: 168 VKISLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 + + +V+ D R + +I+ + + + FA ++ M Sbjct: 156 YILKPLQAVEIAQVLTNALYDKERGLGNESYYIEDNVIELLADYVNGDARFALNCLELMS 215 Query: 221 NLALS--RGMGITRSLAAEVLKETQ 243 ++A +G + ++L AEVL E Q Sbjct: 216 DMAEISPQGKHLNKALLAEVLGERQ 240 >gi|296087560|emb|CBI34149.3| unnamed protein product [Vitis vinifera] Length = 397 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 63/197 (31%), Gaps = 38/197 (19%) Query: 65 RVVILVGPSGSGKSCLANIWSDKS------RSTRFSNIAKSLDSILIDTRKPVLLEDIDL 118 +IL GP G+GK+ +A + S R S + + + + ++ Sbjct: 32 PSIILWGPPGTGKTSIAKAIVNSSSQPSSYRFVSLSAVTAGVKDVRDVVEEARKIKVSKN 91 Query: 119 LDFNDTQLF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 ++ T LF H N + + S + + A T S+ + P L SR Sbjct: 92 MNSKRTLLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITP-LLSR---CR 147 Query: 167 VVKISLPDDDFLEKVIVKMFADRQ-----------IFIDKKLAAYIVQRMERSLVFAEKL 215 V+ ++ + ++ + AD I + ++ + A Sbjct: 148 VLTLNPLQPSHVASLLNRAVADTGRGLAWSVGGASIEVSDDAIDFLSSHCDGDARVALNA 207 Query: 216 VD-----KMDNLALSRG 227 ++ AL Sbjct: 208 LEISAVTAAAREALQSK 224 >gi|225440045|ref|XP_002282146.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|297741633|emb|CBI32765.3| unnamed protein product [Vitis vinifera] Length = 806 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 64/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP GSGK+ +A ++++ + F SN+ K+ + + Sbjct: 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN 300 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + +++ A P S Sbjct: 301 APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSID-- 358 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PD+ +V+ + + + + + Sbjct: 359 -PALR-RFGRFDREIDIGVPDEVGRLEVL--RIHTKNMKLSEDV 398 Score = 40.1 bits (93), Expect = 0.31, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 514 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 570 >gi|149234641|ref|XP_001523200.1| 26S protease regulatory subunit 6A [Lodderomyces elongisporus NRRL YB-4239] gi|146453309|gb|EDK47565.1| 26S protease regulatory subunit 6A [Lodderomyces elongisporus NRRL YB-4239] Length = 429 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 63/178 (35%), Gaps = 40/178 (22%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + ++ GP G+GK+ LA + +S +T A L + I ++ Sbjct: 208 PPKGALMYGPPGTGKTLLARACAAQSGATFLKLAAPQLVQMFIGDGAKLVRDAFALAKEK 267 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151 ++++D + + ++N + D ++ A + Sbjct: 268 APTIIFIDELDAIGTKRFDSDKSGDREVQRTMLELLNQLDGFGSDDRVKVLAATNRVDTL 327 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 L L S RL ++ LP ++ E V+ R++ D + + + RS Sbjct: 328 DPAL--LRSGRLD--RKIEFPLPSEEARESVLKIHA--RKLHCDNDSINW--RELARS 377 >gi|121634950|ref|YP_975195.1| recombination factor protein RarA [Neisseria meningitidis FAM18] gi|120866656|emb|CAM10407.1| hypothetical protein NMC1159 [Neisseria meningitidis FAM18] gi|325132559|gb|EGC55252.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis M6190] gi|325138333|gb|EGC60902.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis ES14902] Length = 436 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 20/134 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G GK+ LA I + + A S + D R+ + +I L T L Sbjct: 50 MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIREAIDKAEIALQQGRATIL 107 Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 F H N Q D+ L L+T A T S+ V P L SR A V + Sbjct: 108 FVDEVHRFNKAQQ-DAFLPHVESGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQPL 162 Query: 174 DDDFLEKVIVKMFA 187 D L+K+I K+ A Sbjct: 163 SSDDLKKLIAKVLA 176 >gi|14601365|ref|NP_147901.1| cell division protein CDC48 [Aeropyrum pernix K1] gi|5105048|dbj|BAA80362.1| cell division control protein 48, AAA family [Aeropyrum pernix K1] Length = 726 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 60/163 (36%), Gaps = 33/163 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109 P + ++L GP G+GK+ LA +++ + S + L I + + Sbjct: 217 PPKGILLYGPPGTGKTLLAKALANEIGAYFISINGPEIMSKYYGESEQRLREIFKEAEEN 276 Query: 110 ---PVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + + +++ A P + Sbjct: 277 APSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKERGRVIVIGATNRPDAID-- 334 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L + ++I PD +++ R + + + + Sbjct: 335 -PALRRPGRFDREIEIRPPDKRARAEILKVHT--RNMPLAEDV 374 Score = 39.7 bits (92), Expect = 0.33, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 19/32 (59%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P R V+L GP G+GK+ LA + +S + + Sbjct: 492 PPRGVLLFGPPGTGKTLLAKAVATESGANFIA 523 >gi|54020867|ref|NP_001005677.1| transitional endoplasmic reticulum ATPase [Xenopus (Silurana) tropicalis] gi|82183742|sp|Q6GL04|TERA_XENTR RecName: Full=Transitional endoplasmic reticulum ATPase; Short=TER ATPase; AltName: Full=15S Mg(2+)-ATPase p97 subunit; Short=p97; AltName: Full=Valosin-containing protein; Short=VCP gi|49257794|gb|AAH74716.1| valosin-containing protein [Xenopus (Silurana) tropicalis] Length = 805 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 62/164 (37%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + ++++D + QL +++ + Q ++M A P S Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L R + V I +PD +++ + + + + Sbjct: 357 LR----RFGRFDREVDIGIPDSTGRLEILQ--IHTKNMKLSDDV 394 Score = 39.0 bits (90), Expect = 0.58, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566 >gi|332288542|ref|YP_004419394.1| recombination factor protein RarA [Gallibacterium anatis UMN179] gi|330431438|gb|AEC16497.1| recombination factor protein RarA [Gallibacterium anatis UMN179] Length = 445 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 51/151 (33%), Gaps = 30/151 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDI--DLLDFN 122 +I GP G+GK+ LA I + + + S + + I +E + Sbjct: 53 MIFWGPPGTGKTTLAEIIAHRLNAKVEYLSAVTSGVKEIRE------AIERAKQNQFAGQ 106 Query: 123 DTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVV 168 T LF H N Q D +++ T L SR A V Sbjct: 107 QTLLFVDEVHRFNKSQQDAFLPYIEDGTIIFIGATTENPSFELNSA---LLSR---ARVY 160 Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199 + + D + +V+ + D+Q ++ Sbjct: 161 LLKSLNIDEIVEVLQRALQDKQFGYGNQIIN 191 >gi|297461182|ref|XP_611864.5| PREDICTED: nuclear VCP-like [Bos taurus] Length = 917 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 58/167 (34%), Gaps = 42/167 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P R V+L GP G GK+ LA+ + + A + + + Sbjct: 353 PPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAATEIVSGVSGESEQKLRELFEQAVSS 412 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151 + +++ID + QL + N++ L++ A P S Sbjct: 413 APCILFIDEIDAITPKREIASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSL 472 Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDK 195 L +A + + +PD+ E+++ + R++ + + Sbjct: 473 DPALR------RAGRFDREICLGIPDEASRERILQTLC--RKLRLPE 511 >gi|18426904|ref|NP_569079.1| ATPase WRNIP1 isoform 2 [Homo sapiens] gi|17511930|gb|AAH18923.1| Werner helicase interacting protein 1 [Homo sapiens] gi|55661734|emb|CAH73663.1| Werner helicase interacting protein 1 [Homo sapiens] gi|119575491|gb|EAW55087.1| Werner helicase interacting protein 1, isoform CRA_c [Homo sapiens] gi|123982094|gb|ABM82876.1| Werner helicase interacting protein 1 [synthetic construct] gi|123996921|gb|ABM86062.1| Werner helicase interacting protein 1 [synthetic construct] gi|189067919|dbj|BAG37857.1| unnamed protein product [Homo sapiens] Length = 640 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 16/88 (18%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA+I + S+ + S + + + D+ N+ Sbjct: 262 PSLILWGPPGCGKTTLAHIIASNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 316 Query: 125 QLF-----------HIINSIHQYDSSLL 141 F H N Q +++LL Sbjct: 317 SFFKRKTILFIDEIHRFNKSQQVNAALL 344 >gi|332158080|ref|YP_004423359.1| cell division protein CDC48 [Pyrococcus sp. NA2] gi|331033543|gb|AEC51355.1| cell division protein CDC48 [Pyrococcus sp. NA2] Length = 795 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 23/162 (14%), Positives = 61/162 (37%), Gaps = 33/162 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109 P + V+L GP G+GK+ LA ++++ + + + L + + + Sbjct: 215 PPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEEN 274 Query: 110 ---PVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + +++ A P + Sbjct: 275 APAIIFIDEIDAIAPKRSEVTGEVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDALD-- 332 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196 P L + +++ +PD ++++ R + I+ Sbjct: 333 -PALRRPGRFDREIEVGVPDKKGRKEILQ--IHTRGMPIEPD 371 Score = 45.5 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 60/177 (33%), Gaps = 42/177 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106 P + ++L GP G+GK+ LA + +S + + NI + Sbjct: 549 PPKGILLYGPPGTGKTLLAKAVATESEANFIAVRGPEILSKWVGESEKNIREIFRKARQA 608 Query: 107 TRKPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL ++ I + +++ A P Sbjct: 609 APTVIFIDEIDAIAPRRGTDVNRVTDRIINQLLTEMDGIQENTGVVVIAATNRPDILDPA 668 Query: 155 LPDLC----SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRME 206 L L RL + + PD+ ++ R + + + + + +R E Sbjct: 669 L--LRPGRFDRL-----ILVPAPDERARFEIFKVH--TRNMPLGEDVDLRELARRTE 716 >gi|330834114|ref|YP_004408842.1| replication factor C large subunit [Metallosphaera cuprina Ar-4] gi|329566253|gb|AEB94358.1| replication factor C large subunit [Metallosphaera cuprina Ar-4] Length = 437 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 38/214 (17%), Positives = 83/214 (38%), Gaps = 36/214 (16%) Query: 54 RLIDSW----PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTR----------------F 93 IDSW P+ + V+L GP G GK+ +A + Sbjct: 29 SWIDSWIKGKPN--YKSVLLYGPPGIGKTTMALALAKSYGLEIIEMNASDTRNVTSLRGI 86 Query: 94 SNIAKSLDSILIDTRKPVLLEDIDLLDFNDT--QLFHIINSIHQYDSSLLMTARTFPVSW 151 + A S+ D K + L++ID + + ++ I ++M A W Sbjct: 87 AEKASVTGSLFSDRGKLIFLDEIDGIQSKQDFGAISTVLELISNTKYPIIMAANNP---W 143 Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211 L +L A +++I + +++ K+ A+ ++ + I +E S Sbjct: 144 DPNLRELR---NATKMIEIKKLGKIPMRRLLKKICANEKVKCEDAAIDVI---IEASDGD 197 Query: 212 AEKLVDKMDNLALSRG-MGITRSLAAEVLKETQQ 244 A ++ + +++ G +T+S+ E+++ ++ Sbjct: 198 ARYAINML--QSVAEGYGQVTQSVVEELVRRKER 229 >gi|20093359|ref|NP_619434.1| cell division control protein 48 [Methanosarcina acetivorans C2A] gi|19918724|gb|AAM07914.1| cell division control protein 48 [Methanosarcina acetivorans C2A] Length = 753 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 23/166 (13%), Positives = 60/166 (36%), Gaps = 39/166 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + V+L GP G+GK+ +A + ++ + + + D D Sbjct: 209 PPKGVLLHGPPGTGKTMIAKAVASETDANFITISGPEIVSKYYGESEQKLREIFDEAEKD 268 Query: 107 TRKPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + +++ A P S Sbjct: 269 APSIIFIDEIDSIAPKRGEVTGEMERRVVAQLLSLMDGLKSRGEVVVIAATNRPNSIDEA 328 Query: 155 LPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L + ++I +PD + +++ + R + ++ ++ Sbjct: 329 LR------RGGRFDREIEIGIPDRNGRRQIL--LIHTRGMPLEDEV 366 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P R V+L GP G+GK+ LA + +S + S L S + + + E Sbjct: 481 PPRGVLLFGPPGTGKTLLAKAVASESEANFISIKGPELLSKYVGESERAIRE 532 >gi|323475288|gb|ADX85894.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus REY15A] gi|323478013|gb|ADX83251.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus HVE10/4] Length = 769 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 52/142 (36%), Gaps = 42/142 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTRKP 110 P + ++L GP G GK+ LA ++++ + + + L I D +K Sbjct: 225 PPKGILLYGPPGVGKTLLAKAIANETDAYFTSINGPEIMSKFYGESEQRLREIFEDAKKH 284 Query: 111 ----VLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPV----- 149 + +++ID + ++ QL +++ + + +++ A P Sbjct: 285 APAIIFVDEIDAIAPKRDEVIGEVERRVVAQLLTLMDGLENRGNVIVIAATNRPSAVDPA 344 Query: 150 ---------SWGVCLPDLCSRL 162 + LPD RL Sbjct: 345 LRRPGRFDREIEIPLPDKQGRL 366 Score = 38.2 bits (88), Expect = 1.1, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 19/32 (59%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + ++L GP G+GK+ LA + +S + + Sbjct: 498 PPKGILLFGPPGTGKTMLAKAVATESGANFIA 529 >gi|256390085|ref|YP_003111649.1| ATPase AAA [Catenulispora acidiphila DSM 44928] gi|256356311|gb|ACU69808.1| AAA ATPase central domain protein [Catenulispora acidiphila DSM 44928] Length = 505 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 37/216 (17%), Positives = 72/216 (33%), Gaps = 43/216 (19%) Query: 23 NKEEQLFFSFPRCLGISRDDLLVHSA------------IEQAVRLIDSWPSWPSRVVILV 70 Q F + R++L++ L+ R V+L Sbjct: 228 FGPHQSALGFHDRPVMDREELILPPGMLEGIEAQILGVNRHRETLLAHGQH-LKRGVLLF 286 Query: 71 GPSGSGKSCLANIWSDK----------SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120 GP G+GK+ + + + R A + L V++ED+DL+ Sbjct: 287 GPPGTGKTHTVRYLMSRLPETTVVVLTASALRLIGQACEIARALQPA--LVVVEDVDLIA 344 Query: 121 FNDTQ-------LFHIINSIH----QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV-V 168 + + LF ++N + D + L+T P L R V Sbjct: 345 QDRSAHMTATPLLFQLLNEMDGLDGDADVTFLLTT----NRIDTLEPALAMRPGRVDHAV 400 Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 ++ LPD + +++ + +D A +++R Sbjct: 401 EVPLPDAEGRARLLE--LYRGSLDLDLSSADTLIER 434 >gi|238061465|ref|ZP_04606174.1| ATP-dependent metalloprotease ftsH [Micromonospora sp. ATCC 39149] gi|237883276|gb|EEP72104.1| ATP-dependent metalloprotease ftsH [Micromonospora sp. ATCC 39149] Length = 671 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 32/210 (15%), Positives = 69/210 (32%), Gaps = 43/210 (20%) Query: 67 VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110 V+L GP G+GK+ LA + ++ S + + + Sbjct: 208 VLLFGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKSNAPAI 267 Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 V +++ID + D + L + ++ +L+ A P L Sbjct: 268 VFVDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDTKGGVILIAATNRPDILDPAL 327 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 L+ + + PD + + ++ + D L + +R A Sbjct: 328 ------LRPGRFDRQIPVDAPDMEGRKAILRVHAKGKPFTPDVDL-DSVARRTP-GFSGA 379 Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKET 242 L + ++ AL R++ + L+E+ Sbjct: 380 -DLANVINEAALLTARKDQRAITNDSLEES 408 >gi|150400075|ref|YP_001323842.1| replication factor C large subunit [Methanococcus vannielii SB] gi|166977386|sp|A6URV8|RFCL_METVS RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|150012778|gb|ABR55230.1| AAA ATPase central domain protein [Methanococcus vannielii SB] Length = 492 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 64/170 (37%), Gaps = 23/170 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIA---------------KSLDSILIDTRKPV 111 V+L GP GSGK+ +A+ ++ A + L R + Sbjct: 42 VLLFGPPGSGKTTMAHAIANDYNFDVIELNASDKRNKDVISQVVGTAATSKSLTGKRTLI 101 Query: 112 LLEDIDLLDFNDT--QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 +L+++D L ND + II + ++ +++TA V P L S + T+V Sbjct: 102 VLDEVDGLSGNDDRGGVSEIIKVLKNAENPVILTAN------DVYKPALSSLRNSVTMVD 155 Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 + + V+ K+ ID+K+ I L A + + Sbjct: 156 AGSVHTNSIPPVLRKIALKEGFEIDEKVIKLISSHAGGDLRAAINDLQAL 205 >gi|257051069|sp|P23787|TERA_XENLA RecName: Full=Transitional endoplasmic reticulum ATPase; Short=TER ATPase; AltName: Full=15S Mg(2+)-ATPase p97 subunit; Short=p97; AltName: Full=Valosin-containing protein; Short=VCP gi|28422362|gb|AAH46949.1| Vcp-prov protein [Xenopus laevis] Length = 805 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 63/164 (38%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + ++++D + QL +++ + Q ++M A P S Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID-- 354 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + V I +PD +++ + + + + Sbjct: 355 -PALR-RFGRFDREVDIGIPDSTGRLEILQ--IHTKNMKLSDDV 394 Score = 39.0 bits (90), Expect = 0.59, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566 >gi|156119445|ref|NP_001095217.1| transitional endoplasmic reticulum ATPase [Xenopus laevis] gi|64966|emb|CAA38146.1| p97 subunit of 15S Mg(2+)- ATPase [Xenopus laevis] Length = 805 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 63/164 (38%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + ++++D + QL +++ + Q ++M A P S Sbjct: 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID-- 354 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + V I +PD +++ + + + + Sbjct: 355 -PALR-RFGRFDREVDIGIPDSTGRLEILQ--IHTKNMKLSDDV 394 Score = 39.0 bits (90), Expect = 0.59, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566 >gi|307299319|ref|ZP_07579120.1| Holliday junction DNA helicase RuvB [Thermotogales bacterium mesG1.Ag.4.2] gi|306915115|gb|EFN45501.1| Holliday junction DNA helicase RuvB [Thermotogales bacterium mesG1.Ag.4.2] Length = 349 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 66/179 (36%), Gaps = 34/179 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +L GP G GK+ LA+I +++ S + ++ LE D+L ++ Sbjct: 56 TLLAGPPGLGKTTLAHIIANELGSEIYVTSGPVIEKQGDLAAILTGLERDDVLFIDEI-- 113 Query: 127 FHIINSIHQYDSSLLMTA----------RTFPVSWGVCLPDL----------CS------ 160 H +N + +L +A P + + L DL S Sbjct: 114 -HRLNRSVEE---ILYSAMEDFQLDIMIGKGPSARSIRL-DLNPFTLVGATTRSGFIGAP 168 Query: 161 -RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218 R + ++++ D L+++I++ I A + +R + A +L+ + Sbjct: 169 LRNRFGMILEMEFYPDRDLKQIILRSATLLGTSIRDDAALLLARRSRGTPRIANRLLRR 227 >gi|254805040|ref|YP_003083261.1| hypothetical protein NMO_1076 [Neisseria meningitidis alpha14] gi|254668582|emb|CBA06099.1| conserved hypothetical protein [Neisseria meningitidis alpha14] Length = 436 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 20/134 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G GK+ LA I + + A S + D R+ + +I L T L Sbjct: 50 MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIREAIDKAEIALQQGRATIL 107 Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 F H N Q D+ L L+T A T S+ V P L SR A V + Sbjct: 108 FVDEVHRFNKAQQ-DAFLPHVESGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQPL 162 Query: 174 DDDFLEKVIVKMFA 187 D L+K+I K+ A Sbjct: 163 SSDDLKKLIAKVLA 176 >gi|26350207|dbj|BAC38743.1| unnamed protein product [Mus musculus] Length = 451 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 25/183 (13%), Positives = 68/183 (37%), Gaps = 38/183 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 222 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 281 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + + ++N + Q ++ + ++ A Sbjct: 282 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 341 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ +P+++ +++ R++ + + + R Sbjct: 342 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 395 Query: 211 FAE 213 A+ Sbjct: 396 GAQ 398 >gi|47076477|dbj|BAD18143.1| transposase B of IS643 [Bacillus halodurans] Length = 254 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 52/112 (46%), Gaps = 22/112 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDTR 108 +IL+GP G GK+ +A ++ + F+ ++ ++ + + Sbjct: 104 LILLGPPGIGKTYIAIGLGLEAVNRGFNVYFVTMGELVQLLKTEEYLNKSKVQLKRMRSA 163 Query: 109 KPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 V+++D+ + + + FH+IN +++ SS+++T+ P WG + D Sbjct: 164 DLVIIDDLMYMAMDQREANLFFHLINHLYER-SSIILTSNKSPDEWGNLIGD 214 >gi|295110953|emb|CBL27703.1| Recombination protein MgsA [Synergistetes bacterium SGP1] Length = 446 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 31/192 (16%), Positives = 69/192 (35%), Gaps = 28/192 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRF-------------SNIAKSLDSILIDTRKPVLL 113 +I GP G GK+ LA + + ++R+ + + ++ + + R V + Sbjct: 52 MIFWGPPGVGKTTLAGVIAQRTRAAFINFSAVTSGIKEIRAVMQRAEEGRRLGGRTIVFV 111 Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 ++I + F + S +L+ A T S+ V L SR V + Sbjct: 112 DEIHRFNKAQQDAFLPF---VERGSIVLIGATTENPSFEVNGA-LLSR---CRVFVLKAL 164 Query: 174 DDDFLEKVIVKMFAD-RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDK--MDNLALS 225 + L ++ + +D R + + + I A ++ ++ Sbjct: 165 TAEELAGLLSRALSDPRGLGRYRAEVAPDMLNAIATFANGDARAALSTLEMAVLNGEPCG 224 Query: 226 RGMGITRSLAAE 237 G+ +T + A+ Sbjct: 225 NGIRVTEEMLAQ 236 >gi|289578776|ref|YP_003477403.1| ATPase AAA [Thermoanaerobacter italicus Ab9] gi|289528489|gb|ADD02841.1| AAA ATPase central domain protein [Thermoanaerobacter italicus Ab9] Length = 443 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 32/138 (23%), Positives = 54/138 (39%), Gaps = 22/138 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA I ++ + S FS + + I K ++D + T Sbjct: 56 MILWGPPGVGKTTLAMIIANMTNSKFVTFSAVLSGIKEIKEIMAKA----ELDAMHGTRT 111 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +F H N + + +L+ A T S+ V L SR + V + Sbjct: 112 VVFIDEIHRFNKAQQDAFLPHVEKGNIILIGATTENPSFEVNSA-LLSR---SKVFVMKP 167 Query: 173 PDDDFLEKVIVKMFADRQ 190 + L ++ + D Q Sbjct: 168 LTKEDLLILLKRALKDEQ 185 >gi|124004296|ref|ZP_01689142.1| transposase B of [Microscilla marina ATCC 23134] gi|123990366|gb|EAY29865.1| transposase B of [Microscilla marina ATCC 23134] Length = 247 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 60/132 (45%), Gaps = 29/132 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI------------------DTR 108 VIL+GPSG+GK+ +A + + + I ++++ + Sbjct: 103 VILMGPSGTGKTFIAAGLAYLALKAGYKAIFRTMEDLARILKLSDMTKNNRAQYNACVKA 162 Query: 109 KPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD--LCS--- 160 + ++++D+ + LFH+I+++H+ SS+++T P W L D L + Sbjct: 163 ELLVIDDLMMFPIEKKVGQMLFHLIDTLHE-KSSVIITTNKSPKEWAEALDDQVLATAML 221 Query: 161 -RLKA-ATVVKI 170 RL A VV++ Sbjct: 222 DRLLHRAQVVQL 233 >gi|83590492|ref|YP_430501.1| recombination factor protein RarA [Moorella thermoacetica ATCC 39073] gi|83573406|gb|ABC19958.1| Recombination protein MgsA [Moorella thermoacetica ATCC 39073] Length = 441 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 32/203 (15%), Positives = 73/203 (35%), Gaps = 39/203 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRK---------PVL 112 +IL GP GSGK+ LA I + +R+ + + ++ R+ + Sbjct: 55 IILWGPPGSGKTTLARIIATMTRAHFEALNAVLDGINDIRRVIAAAREREKYYQQKTVIF 114 Query: 113 LEDIDLLDFN-DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++I N L + +L+ A + V + SR + + ++ Sbjct: 115 VDEIHRWAKNIQDALL----PCVEEGLLILIGATIENPMFTVNAA-IRSR---SRIFRLE 166 Query: 172 LPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 D + ++ + AD R + D + ++ + A ++ ++ L Sbjct: 167 ALSDAAILTLLRRALADAERGLGKFNVQADPEALEHLARVAN---GDARVALNALEFAVL 223 Query: 225 ------SRGMGITRSLAAEVLKE 241 S +T +A E +++ Sbjct: 224 TTAPDTSGRRHLTLEVAEEAIQQ 246 >gi|228470835|ref|ZP_04055683.1| ATPase, AAA family [Porphyromonas uenonis 60-3] gi|228307508|gb|EEK16513.1| ATPase, AAA family [Porphyromonas uenonis 60-3] Length = 436 Score = 46.3 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 63/186 (33%), Gaps = 37/186 (19%) Query: 26 EQLFFSFPRCLGISRDDLLVH-----SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80 EQ+ + + V A +++ +IL GP G GK+ L Sbjct: 4 EQIPLAERMRPKTLEE--YVGQSHLVGANAPLRVMLER---GHIPSMILWGPPGVGKTTL 58 Query: 81 ANIWSD--KSRSTRFSNIAKSLDSILIDTRKP----------------VLLEDIDLLDFN 122 A + S + R S + + + ++ + +++I + Sbjct: 59 ARLLSQLMQCRCYSLSAVGSGVADVRKTLQEAKDAQAGLFSQHQGRPILFIDEIHRFSKS 118 Query: 123 DT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 L + + L+ A T S+ V P L SR V + +D L ++ Sbjct: 119 QQDSLL----AAVEQGVVTLIGATTENPSFQVIRP-LLSR---CQVFVLKPLEDSDLSQL 170 Query: 182 IVKMFA 187 I ++FA Sbjct: 171 IDRVFA 176 >gi|190149782|ref|YP_001968307.1| hypothetical protein APP7_0513 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|189914913|gb|ACE61165.1| hypothetical protein APP7_0513 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] Length = 446 Score = 46.3 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 40/202 (19%), Positives = 72/202 (35%), Gaps = 35/202 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I GP G+GK+ LA I + + R S + + I + ++ T Sbjct: 52 MIFWGPPGTGKTTLAEIIAHHFDAEVERLSAVTSGVKEIREAIERA----KLNRQTGRRT 107 Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N Q D +++ T L SR A + + Sbjct: 108 LLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNA---LLSR---AKIYIL 161 Query: 171 SLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + +V+ D R + +I+ + + + FA ++ M ++A Sbjct: 162 KPLQAVEIAQVLTNALYDKERGLGNESYYIEDNVIELLADYVNGDARFALNCLELMSDMA 221 Query: 224 LS--RGMGITRSLAAEVLKETQ 243 +G + ++L AEVL E Q Sbjct: 222 EISPQGKHLNKALLAEVLGERQ 243 >gi|148981576|ref|ZP_01816463.1| hypothetical protein VSWAT3_04716 [Vibrionales bacterium SWAT-3] gi|145960819|gb|EDK26153.1| hypothetical protein VSWAT3_04716 [Vibrionales bacterium SWAT-3] Length = 449 Score = 46.3 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 44/202 (21%), Positives = 71/202 (35%), Gaps = 44/202 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G+GK+ LA + ++ + + R S + + I I K + T Sbjct: 54 MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKDIRIAIEKA----RENKQAGRRT 109 Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N Q D ++ T L SR A V K+ Sbjct: 110 ILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKL 163 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL------ 224 + + D + VI + D+Q + A + ++R +LV+ ++L Sbjct: 164 TSLNTDDIATVIRQAIEDKQRGLGDVPAHFADNVLDR----LAELVNGDARMSLNYLELL 219 Query: 225 --------SRGMGITRSLAAEV 238 IT L AEV Sbjct: 220 YDMAEDNDKGEKAITLQLLAEV 241 >gi|328771508|gb|EGF81548.1| hypothetical protein BATDEDRAFT_29838 [Batrachochytrium dendrobatidis JAM81] Length = 480 Score = 46.3 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 40/198 (20%), Positives = 64/198 (32%), Gaps = 37/198 (18%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSR--------------STRFSNIAKSLDSILIDTRKP 110 +IL GP GSGK+ LA I + + R S L + Sbjct: 129 PCMILWGPPGSGKTTLARIIAKELGVHFKEMSATIHNVSDVRKSCEEARTQRKLTGKKSI 188 Query: 111 VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 + L++I F + + A T S+ V L SR V + Sbjct: 189 LFLDEIHRFTKAQQDFFLP---PVEQGEFTFIAATTENPSFRVNAA-LLSR---CKVFVM 241 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---R-SLVFAEKLVD-----KMDN 221 + L +++ I + AYI + R S+ E +D K+D Sbjct: 242 DKYESASLCQILRHSP----FVIPDNVIAYISTMCDGDARVSINALEMALDAAVHSKLDQ 297 Query: 222 LALSRGMGITRSLAAEVL 239 L L + +L+ L Sbjct: 298 LTLP---AVQLALSKSHL 312 >gi|313898685|ref|ZP_07832220.1| replication-associated recombination protein A [Clostridium sp. HGF2] gi|312956569|gb|EFR38202.1| replication-associated recombination protein A [Clostridium sp. HGF2] Length = 441 Score = 46.3 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 40/194 (20%), Positives = 76/194 (39%), Gaps = 28/194 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I GP G GK+ LA I + ++++ FS + + I ++ ED L T Sbjct: 53 MIFWGPPGVGKTTLARIIARQTQAHFINFSAVTSGIREIKAVMKEA---EDA-RLYGRKT 108 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +F H N + S +L+ A T S+ V L SR K + + + Sbjct: 109 IVFVDEIHRFNKAQQDAFLPYVEKGSIILIGATTENPSFEVNAA-LLSRCKVFVLKALEV 167 Query: 173 PD-DDFLEKVIV--KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK--MDNLALSRG 227 D + L+ + + F + + I ++ + A ++ ++ + G Sbjct: 168 SDLVELLKHALQDERGFGSQHVLITEEQLHMLAVFANGDARTALNTLEMVVLNGESSEAG 227 Query: 228 MGITRSLAAEVLKE 241 + IT EVL++ Sbjct: 228 IVIT----KEVLEQ 237 >gi|304391485|ref|ZP_07373427.1| replication-associated recombination protein A [Ahrensia sp. R2A130] gi|303295714|gb|EFL90072.1| replication-associated recombination protein A [Ahrensia sp. R2A130] Length = 440 Score = 46.3 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 67/191 (35%), Gaps = 27/191 (14%) Query: 49 IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILID 106 R++++ ++ GP GSGK+ +A + +D+ + S I + + Sbjct: 44 NGALRRMLEAP---SLGSMVFWGPPGSGKTTVARLLADEGEHHFEQISAIFTGVADLKKV 100 Query: 107 TRKPVLLEDIDLLDFNDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVC 154 + I + T LF H N + + L+ A T S+ + Sbjct: 101 FEQA----RIRAGNGRRTLLFVDEIHRFNRAQQDSFLPVMEDGTITLIGATTENPSFELN 156 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKM--FADRQIFIDKKLAAYIVQRMERSLVFA 212 L SR A V+ DDD L ++ + R + + +++ + Sbjct: 157 AAVL-SR---ARVLTFRPHDDDSLRSLMARAETTEGRALPLTDDARESLLRMADGDGRAV 212 Query: 213 EKLVDKMDNLA 223 L+++ A Sbjct: 213 LTLIEEAWRAA 223 >gi|269102237|ref|ZP_06154934.1| putative ATPase protein [Photobacterium damselae subsp. damselae CIP 102761] gi|268162135|gb|EEZ40631.1| putative ATPase protein [Photobacterium damselae subsp. damselae CIP 102761] Length = 447 Score = 46.3 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 41/200 (20%), Positives = 80/200 (40%), Gaps = 40/200 (20%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST-------------RFSNIAKSLDSILIDTRKPVLL 113 +IL GP G+GK+ LA + ++ + + + I K+ D+ + R + + Sbjct: 52 MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKDIRAAIDKARDNKMAGRRTILFV 111 Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++ + + F HI + + + A T S+ + L SR A V K+ Sbjct: 112 DEVHRFNKSQQDAFLPHI-----EDGTVTFIGATTENPSFELNNA-LLSR---ARVYKLK 162 Query: 172 LPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIV------QRMERSLVFAEKLVDK 218 + + + +V+ + D R + + + RM SL + E+L+D Sbjct: 163 SLEKEEILEVLDQALNDKERGVSDTNLNFVDDVKERLADLVCGDARM--SLNYLEQLIDM 220 Query: 219 MDNLALSRGMGITRSLAAEV 238 + + IT L AEV Sbjct: 221 AEEDS-KGIKQITLPLLAEV 239 >gi|256964749|ref|ZP_05568920.1| AAA ATPase [Enterococcus faecalis HIP11704] gi|307272829|ref|ZP_07554076.1| recombination factor protein RarA [Enterococcus faecalis TX0855] gi|256955245|gb|EEU71877.1| AAA ATPase [Enterococcus faecalis HIP11704] gi|306510443|gb|EFM79466.1| recombination factor protein RarA [Enterococcus faecalis TX0855] Length = 425 Score = 46.3 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 71/195 (36%), Gaps = 36/195 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117 +IL GP G+GK+ +A+ + + + R N A + + +LL++I Sbjct: 42 MILYGPPGTGKTSIASAIAGSTNYAFRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIH 101 Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 LD D L H+ N ++M T + P + SR + ++ + Sbjct: 102 RLDKTKQDFLLPHLEN------GRIIMIGATTENPYITINPAIRSR---TQIFEVKPLTE 152 Query: 176 DFLEKVIVKMFAD--RQI-FIDKKLAAYIVQRMERSLV-FAEKLVDKMDNLALSRGM--- 228 +++ I + D R + L +Q + R+ ++ ++ L+ Sbjct: 153 TDIQQAIQEALTDSTRGLGDYPVHLEEKALQHLTRTTNGDLRSALNGLE---LAVKSTPK 209 Query: 229 ------GITRSLAAE 237 IT + E Sbjct: 210 NEQGEIKITLPIIEE 224 >gi|330815819|ref|YP_004359524.1| AAA ATPase, central region [Burkholderia gladioli BSR3] gi|327368212|gb|AEA59568.1| AAA ATPase, central region [Burkholderia gladioli BSR3] Length = 436 Score = 46.3 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 59/175 (33%), Gaps = 19/175 (10%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA + ++ + A I + + + T L Sbjct: 50 MILWGPPGVGKTTLARLTANAFDCEFIALSAVLGGVKDIREAMEQAKDTLHR-NGRHTIL 108 Query: 127 F----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N + + A T S+ V L SR A V + D Sbjct: 109 FVDEIHRFNKGQQDALLPFVESGLVTFIGATTENPSFEVNSA-LLSR---AQVYVLKSLD 164 Query: 175 DDFLEKVIVK--MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 D + +++ + A + + K ++ + L+++ ALS Sbjct: 165 DAEMRQLLARAQQIALDGLTFEDKAVDTLIGYADGDARRFLNLLEQAQTAALSAR 219 >gi|325128338|gb|EGC51222.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis N1568] Length = 436 Score = 46.3 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 20/134 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G GK+ LA I + + A S + D R+ + +I L T L Sbjct: 50 MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIREAIDKAEIALQQGRATIL 107 Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 F H N Q D+ L L+T A T S+ V P L SR A V + Sbjct: 108 FVDEVHRFNKAQQ-DAFLPHVESGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQPL 162 Query: 174 DDDFLEKVIVKMFA 187 D L+K+I K+ A Sbjct: 163 SSDDLKKLIAKVLA 176 >gi|255505880|ref|ZP_05348636.3| transcriptional regulator, LuxR family [Bryantella formatexigens DSM 14469] gi|255265338|gb|EET58543.1| transcriptional regulator, LuxR family [Bryantella formatexigens DSM 14469] Length = 730 Score = 46.3 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 37/98 (37%), Gaps = 10/98 (10%) Query: 66 VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI---LIDTRKPVLLEDIDLLDFN 122 V L G +G+GK+ LA + + +S + + + V+++D+ + Sbjct: 40 VAYLYGVTGTGKTRLAREVLARKQYEYYSARETQPEEVGVKPDGQERIVVVDDLYTVTLQ 99 Query: 123 D-----TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 + LF Q L++ +R W + L Sbjct: 100 EIKECWAALFR--KLAGQEGVRLVLVSRAPVPGWLLPL 135 >gi|224133614|ref|XP_002321618.1| predicted protein [Populus trichocarpa] gi|222868614|gb|EEF05745.1| predicted protein [Populus trichocarpa] Length = 813 Score = 46.3 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 65/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP GSGK+ +A ++++ + F SN+ K+ + + Sbjct: 246 PPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 305 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + ++M A P S Sbjct: 306 APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSID-- 363 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PD+ +V+ + + + +++ Sbjct: 364 -PALR-RFGRFDREIDIGVPDEVGRLEVL--RIHTKNMKLAEEV 403 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 519 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 575 >gi|213418771|ref|ZP_03351837.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 182 Score = 46.3 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 12/92 (13%), Positives = 28/92 (30%), Gaps = 16/92 (17%) Query: 8 YSFFVPDKQKNDQPKN-------------KEEQLFFSFPRCLGISRDDLLVHSAIEQAVR 54 ++ P + QP+ + + + + D+ + + + A Sbjct: 69 HNVVAPTQTTTAQPQRVAPAARSGWDNVPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARA 128 Query: 55 LIDSWPSWPSRV---VILVGPSGSGKSCLANI 83 P + L G +G GK+ L + Sbjct: 129 AARQVADNPGGAYNPLFLYGGTGLGKTHLLHA 160 >gi|168048981|ref|XP_001776943.1| predicted protein [Physcomitrella patens subsp. patens] gi|162671644|gb|EDQ58192.1| predicted protein [Physcomitrella patens subsp. patens] Length = 821 Score = 46.3 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 64/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP GSGK+ +A ++++ + F SN+ K+ + + Sbjct: 250 PPKGILLFGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 309 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + ++M A P S Sbjct: 310 APAIIFIDEIDSIAPKREKTQGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSID-- 367 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PD+ +V+ + + + + + Sbjct: 368 -PALR-RFGRFDREIDIGVPDEVGRLEVL--RIHSKNMKLAEDV 407 Score = 38.2 bits (88), Expect = 0.94, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 523 PSKGVLFYGPPGCGKTMLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARG 581 >gi|228969158|ref|ZP_04130055.1| Prophage LambdaBa02, DNA replication protein DnaC [Bacillus thuringiensis serovar sotto str. T04001] gi|228790541|gb|EEM38245.1| Prophage LambdaBa02, DNA replication protein DnaC [Bacillus thuringiensis serovar sotto str. T04001] Length = 225 Score = 46.3 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 51/126 (40%), Gaps = 24/126 (19%) Query: 51 QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------ 104 A++ + ++ W +++ G G+GK+ LA ++ + + +S+ +L Sbjct: 60 IAMKYVKTFKEWNGESLMIWGDPGNGKTHLAAAIVNELSEKGYIVVFQSVPELLQRIRST 119 Query: 105 ---------------IDTRKPVLLEDIDL---LDFNDTQLFHIINSIHQYDSSLLMTART 146 + ++L+DI ++ + +LF+II+ ++ + L T+ Sbjct: 120 FNSENKENETQIMRALLECDLLILDDIGAEKTTEWVEEKLFNIIDGRYRKELPTLYTSNL 179 Query: 147 FPVSWG 152 P Sbjct: 180 EPKELK 185 >gi|209878626|ref|XP_002140754.1| 26S proteasome regulatory subunit 6A [Cryptosporidium muris RN66] gi|209556360|gb|EEA06405.1| 26S proteasome regulatory subunit 6A, putative [Cryptosporidium muris RN66] Length = 425 Score = 46.3 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 31/181 (17%), Positives = 67/181 (37%), Gaps = 40/181 (22%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 204 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKMVRDAFQIAREK 263 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151 ++++D + + ++N + D ++ A P + Sbjct: 264 APAIIFIDELDAIGMKRFDSEHSGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRPDTL 323 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL V++ P++D ++ R++ +DK + Q + RS Sbjct: 324 DPAL--LRSGRLD--RKVELPHPNEDARAHILQ--IHSRKMNVDKNDVNF--QELARSTD 375 Query: 211 F 211 Sbjct: 376 D 376 >gi|109069427|ref|XP_001090335.1| PREDICTED: ATPase WRNIP1 isoform 1 [Macaca mulatta] Length = 640 Score = 46.3 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 16/88 (18%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA+I ++ S+ + S + + + D+ N+ Sbjct: 262 PSLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 316 Query: 125 QLF-----------HIINSIHQYDSSLL 141 F H N Q +++LL Sbjct: 317 SFFKRKTILFIDEIHRFNKSQQVNAALL 344 >gi|98962497|gb|ABF59516.1| putative spindle disassembly related protein CDC48 [Nicotiana tabacum] Length = 808 Score = 46.3 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 65/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP GSGK+ +A ++++ + F SN+ K+ + + Sbjct: 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN 300 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + ++M A P S Sbjct: 301 APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSID-- 358 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PD+ +V+ + + + +++ Sbjct: 359 -PALR-RFGRFDREIDIGVPDEVGRLEVL--RIHTKNMKLAEEV 398 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 514 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 570 >gi|269960797|ref|ZP_06175168.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269834461|gb|EEZ88549.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 449 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 44/199 (22%), Positives = 69/199 (34%), Gaps = 38/199 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G+GK+ LA + ++ + + A + I E+ + T L Sbjct: 54 MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAREN--KMAGRRTIL 111 Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172 F H N Q D ++ T L SR A V K++ Sbjct: 112 FVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKLTS 165 Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIV------QRMERSLVFAEKLVDKM 219 D D + + + +D R + + + RM SL + E L D Sbjct: 166 LDKDEISLALNQAISDKERGLGNTPALFADNVLDRLAELVNGDARM--SLNYLELLYDMA 223 Query: 220 DNLALSRGMGITRSLAAEV 238 ++ A IT L AEV Sbjct: 224 EDNA-QGEKEITLKLLAEV 241 >gi|315230875|ref|YP_004071311.1| cell division protein FtsH [Thermococcus barophilus MP] gi|315183903|gb|ADT84088.1| cell division protein FtsH [Thermococcus barophilus MP] Length = 834 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 22/162 (13%), Positives = 62/162 (38%), Gaps = 33/162 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109 P + V+L GP G+GK+ LA ++++ + + + L + + + Sbjct: 243 PPKGVLLYGPPGTGKTLLAKAVANETNAHFIAINGPEIMSKFYGESEERLREVFKEAEEN 302 Query: 110 ---PVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + + +++ A P + Sbjct: 303 APSIIFIDEIDAIAPKREEVTGEVEKRVVSQLLTLMDGLKKRGKVIVIAATNRPDAID-- 360 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196 P L + +++ +PD ++++ R + ++ Sbjct: 361 -PALRRPGRFDREIEVGVPDKQGRKEILQ--IHTRGMPLEPD 399 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 41/247 (16%), Positives = 89/247 (36%), Gaps = 55/247 (22%) Query: 39 SRDDLLVHSAIEQAVRLIDSWPSW-------PSRVVILVGPSGSGKSCLANIWSDKSRST 91 +D V A+ +AV +P P + ++L GP G+GK+ LA + +S + Sbjct: 549 GLED--VKQALREAVEWPLKYPKAFQRLGINPPKGILLYGPPGTGKTMLAKAVATESEAN 606 Query: 92 ------------RFSNIAKSLDSILIDTRKP----VLLEDIDLLD---FND--------- 123 K + I R+ V +++ID + +D Sbjct: 607 FIGIRGPEVLSKWVGESEKRIREIFRKARQAAPTVVFIDEIDAIAPMRGSDVNRVTDRII 666 Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC----SRLKAATVVKISLPDDDFLE 179 QL ++ + + +++ A P L L RL + + PD+ Sbjct: 667 NQLLTEMDGLEENSGVVVIAATNRPDILDPAL--LRPGRFDRL-----ILVPAPDEKARY 719 Query: 180 KVIVKMFADRQIFIDKKL-AAYIVQRME-RSLVFAEKLVDKMDNLALSRGMGITRSLAAE 237 +++ R++ + + + + +R+E + LV A++ + E Sbjct: 720 EILKVH--TRRVPLAEDVNLKELAKRLEGYTGADIAALVR---EAAMNALRRTVAKIPRE 774 Query: 238 VLKETQQ 244 +++E + Sbjct: 775 LIEEQSE 781 >gi|190410106|ref|YP_001965630.1| hypothetical protein [Sinorhizobium meliloti] gi|125631136|gb|ABN47137.1| hypothetical protein [Sinorhizobium meliloti SM11] Length = 270 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 57/165 (34%), Gaps = 37/165 (22%) Query: 29 FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI----- 83 F F +V A A+ D W + ++L G G GKS LA Sbjct: 79 TFDFTAVP-------MVSKARVMALVAGDVWLKNGAN-LMLFGGPGGGKSHLAAAIGAGL 130 Query: 84 ----WS----------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ---L 126 W K ++ R N+ +D ++L+D+ + + + L Sbjct: 131 IENGWRVLFTRTTDLVQKLQAAR-RNLDLEGAIAKLDKYHLLVLDDMAYVSKDQAETSVL 189 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 F +I S SLL+TA W PD KA T+ I Sbjct: 190 FELI-SARYERRSLLITANQPFGEWDKVFPD-----KAMTLAAID 228 >gi|186475407|ref|YP_001856877.1| recombination factor protein RarA [Burkholderia phymatum STM815] gi|184191866|gb|ACC69831.1| AAA ATPase central domain protein [Burkholderia phymatum STM815] Length = 453 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 40/191 (20%), Positives = 72/191 (37%), Gaps = 24/191 (12%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA + +D + + ++ S + D R+ V I + + T + Sbjct: 65 MILWGPPGVGKTTLARLMADAFHAQFIA--LSAVLSGVKDIREAVETAQIHRANGHQTLV 122 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N + + + A T S+ V L SR A+V + D Sbjct: 123 FVDEVHRFNKSQQDAFLPHVESGLFVFVGATTENPSFEVNSA-LLSR---ASVYVLKSLD 178 Query: 175 -DDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---RSLVFAEKLVDKMDNLALSRGMGI 230 D+ E + + + + ++ + R L+ ++V + A + I Sbjct: 179 TDEQRELLARAQQELGGLTLTDEARDALIGSADGDGRKLLNNMEIVAR--AAARQKKTEI 236 Query: 231 TRSLAAEVLKE 241 L A L E Sbjct: 237 DGELLASALSE 247 >gi|297829516|ref|XP_002882640.1| hypothetical protein ARALYDRAFT_478309 [Arabidopsis lyrata subsp. lyrata] gi|297328480|gb|EFH58899.1| hypothetical protein ARALYDRAFT_478309 [Arabidopsis lyrata subsp. lyrata] Length = 809 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 64/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP GSGK+ +A ++++ + F SN+ K+ + + Sbjct: 240 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN 299 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + ++M A P S Sbjct: 300 APSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSID-- 357 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PD+ +V+ + + + + + Sbjct: 358 -PALR-RFGRFDREIDIGVPDEIGRLEVL--RIHTKNMKLAEDV 397 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 513 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 569 >gi|238879198|gb|EEQ42836.1| conserved hypothetical protein [Candida albicans WO-1] Length = 678 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 43/256 (16%), Positives = 73/256 (28%), Gaps = 58/256 (22%) Query: 16 QKNDQPKNKEEQLFFSFPRCLG-ISRDDLL-----VHSAIEQAVRLIDSWPSWPSRVVIL 69 QK + K + Q L S DD V +I + +L Sbjct: 150 QKAKEIKELKRQASIPLAHRLRPKSLDDFFGQEKLVGE-NGALRNIIQAD---IIPSFLL 205 Query: 70 VGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 G G GK+ LA I + + + + AK L + + E+ L T Sbjct: 206 WGVPGIGKTSLARIIAKTTSCKFVELSGIDSNAKRLKEVFVQA------ENHKNLSGQRT 259 Query: 125 QLF----HIINSIHQYDSSLLM-------------TARTFPVSWGVCLPDLCSRLKAATV 167 LF H N Q LL+ T + L SR+ Sbjct: 260 ILFLDEIHRFNKAVQD---LLLPVIEKGTLTVIGATTENPSFNLNNA---LLSRM---HT 310 Query: 168 VKISLPD-DDFLEKVIVKMFADRQ----------IFIDKKLAAYIVQRMERSLVFAEKLV 216 + D ++ + +F + I + K YI + A ++ Sbjct: 311 FVMEPLTVDSLIKILTRALFEVNRVRKNLYGLHYISLQKDAYHYIAELCMGDSRVALNIL 370 Query: 217 DKMDNLALSRGMGITR 232 + ++ + T Sbjct: 371 ETINAYLSADKFKSTV 386 >gi|284991584|ref|YP_003410138.1| AAA ATPase central domain-containing protein [Geodermatophilus obscurus DSM 43160] gi|284064829|gb|ADB75767.1| AAA ATPase central domain protein [Geodermatophilus obscurus DSM 43160] Length = 445 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 61/157 (38%), Gaps = 28/157 (17%) Query: 67 VILVGPSGSGKSCLANIW--SDKSRSTRFSNIAKSLDSI------------LIDTRKPVL 112 ++L GP G+GK+ LA++ + K + + S + + + R + Sbjct: 58 LVLYGPPGTGKTTLAHVISLATKRQFVQLSALDAGVKEVRAVIASAKRELTYAGRRTVLF 117 Query: 113 LEDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 ++++ L S + L+ A T + V P L SR + V+ + Sbjct: 118 IDEVHRFSKTQQDSLL----SAVEDRIVSLIAATTENPFFSVVSP-LLSR---SLVLALQ 169 Query: 172 LPDDDFLEKVIVKMF-ADRQI----FIDKKLAAYIVQ 203 DD + ++ + +DR + + + ++V+ Sbjct: 170 PLSDDDVRSLLRRALTSDRGLDGAVTLSPEAEEHLVR 206 >gi|15897129|ref|NP_341734.1| AAA ATPase family protein [Sulfolobus solfataricus P2] gi|284174370|ref|ZP_06388339.1| AAA ATPase family protein [Sulfolobus solfataricus 98/2] gi|13813310|gb|AAK40524.1| AAA family ATPase [Sulfolobus solfataricus P2] gi|261601791|gb|ACX91394.1| AAA family ATPase, CDC48 subfamily [Sulfolobus solfataricus 98/2] Length = 769 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 52/142 (36%), Gaps = 42/142 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTRKP 110 P + ++L GP G GK+ LA ++++ + + + L I D +K Sbjct: 225 PPKGILLYGPPGVGKTLLAKAIANETDAYFTSINGPEIMSKFYGESEQRLREIFEDAKKH 284 Query: 111 ----VLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPV----- 149 + +++ID + ++ QL +++ + + +++ A P Sbjct: 285 APAIIFVDEIDAIAPKRDEVIGEVERRVVAQLLTLMDGLENRGNVIVIAATNRPSAVDPA 344 Query: 150 ---------SWGVCLPDLCSRL 162 + LPD RL Sbjct: 345 LRRPGRFDREIEIPLPDKQGRL 366 Score = 37.8 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 19/32 (59%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + ++L GP G+GK+ LA + +S + + Sbjct: 498 PPKGILLFGPPGTGKTMLAKAVATESGANFIA 529 >gi|15232776|ref|NP_187595.1| CDC48 (CELL DIVISION CYCLE 48); ATPase/ identical protein binding [Arabidopsis thaliana] gi|1705677|sp|P54609|CD48A_ARATH RecName: Full=Cell division control protein 48 homolog A; Short=AtCDC48a gi|6681343|gb|AAF23260.1|AC015985_18 putative transitional endoplasmic reticulum ATPase [Arabidopsis thaliana] gi|1019904|gb|AAC49120.1| cell division cycle protein [Arabidopsis thaliana] gi|17473551|gb|AAL38252.1| putative transitional endoplasmic reticulum ATPase [Arabidopsis thaliana] gi|20453130|gb|AAM19807.1| AT3g09840/F8A24_11 [Arabidopsis thaliana] gi|110735114|gb|ABG89127.1| CDC48a [synthetic construct] gi|222424942|dbj|BAH20422.1| AT3G09840 [Arabidopsis thaliana] gi|332641299|gb|AEE74820.1| cell division control protein 48-A [Arabidopsis thaliana] Length = 809 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 64/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP GSGK+ +A ++++ + F SN+ K+ + + Sbjct: 240 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN 299 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + ++M A P S Sbjct: 300 APSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSID-- 357 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PD+ +V+ + + + + + Sbjct: 358 -PALR-RFGRFDREIDIGVPDEIGRLEVL--RIHTKNMKLAEDV 397 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 513 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 569 >gi|14590568|ref|NP_142636.1| cell division control [Pyrococcus horikoshii OT3] gi|3257095|dbj|BAA29778.1| 840aa long hypothetical cell division control protein (transitional endoplasmic reticulum ATPase) [Pyrococcus horikoshii OT3] Length = 840 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 24/162 (14%), Positives = 61/162 (37%), Gaps = 33/162 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109 P + V+L GP G+GK+ LA ++++ + + + L I + + Sbjct: 245 PPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEEN 304 Query: 110 ---PVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + +++ A P + Sbjct: 305 APAIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKGRGKVIVIGATNRPDALD-- 362 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196 P L + +++ +PD ++++ R + I+ Sbjct: 363 -PALRRPGRFDREIEVGVPDKQGRKEILQ--IHTRGMPIEPD 401 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 32/202 (15%), Positives = 68/202 (33%), Gaps = 45/202 (22%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRKP 110 P + V+L GP G+GK+ LA + +S + + K + I R+ Sbjct: 580 PPKGVLLYGPPGTGKTLLAKAVATESEANFIAVRGPEVLSKWVGESEKRIREIFRKARQA 639 Query: 111 ----VLLEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 + +++ID + QL ++ + + +++ A P Sbjct: 640 APAIIFIDEIDAIAPARGTSEGEKVTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDP 699 Query: 154 CLPDLC----SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERS 208 L L RL + + PD++ ++ R + + + + +R E Sbjct: 700 AL--LRPGRFDRL-----ILVPAPDEEARFEIFKVHT--RSMPLADDVDLRELARRTEGY 750 Query: 209 LVFAEKLVDKMDNLALSRGMGI 230 V + AL+ + Sbjct: 751 TGADIAAVCR--EAALNALRRV 770 >gi|321471444|gb|EFX82417.1| hypothetical protein DAPPUDRAFT_316737 [Daphnia pulex] Length = 759 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 53/155 (34%), Gaps = 32/155 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110 P R +L GP G GK+ LA+ + + F A L S + + Sbjct: 214 PPRGFLLHGPPGCGKTLLAHAIAGELEIPFFKVAAPELVSGVSGESEEQIRFLFEQATSS 273 Query: 111 ----VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 + +++ID + + + + ++ C+ DL SR + Sbjct: 274 APCIIFIDEIDAITPKRET------AQREMERRIV-------AQLLTCMDDLSSRDRNIP 320 Query: 167 VVKISLPD--DDFLEKVIVKMFADRQIFID-KKLA 198 V+ I + D + DR+I + LA Sbjct: 321 VLVIGATNRPDALDPALRRAGRFDREISLGIPDLA 355 Score = 39.0 bits (90), Expect = 0.59, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 PS V+ L GP G GK+ LA ++++ S L ++ + + + Sbjct: 516 PSGVL-LCGPPGCGKTLLAKAIANEAGINFISVKGPELLNMYVGESERAV 564 >gi|282882872|ref|ZP_06291477.1| replication-associated recombination protein A [Peptoniphilus lacrimalis 315-B] gi|281297283|gb|EFA89774.1| replication-associated recombination protein A [Peptoniphilus lacrimalis 315-B] Length = 429 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 37/202 (18%), Positives = 78/202 (38%), Gaps = 32/202 (15%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS-----LDSILIDTRKPVLLEDIDLL 119 ++ GP G GK+ LA I ++ + A + L +L + +I+ + Sbjct: 46 NSLLFYGPPGVGKTTLAKIIANLTNKNFVELSAVTSNIKELREVLNKAQDDFKFSNIETI 105 Query: 120 DF-NDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 F ++ H N + +L+ A T + V L SRL+ + + Sbjct: 106 VFIDEI---HRFNKTQQDALLPYVERGIIILIGATTENPYFEVNKA-LLSRLQILNLTAL 161 Query: 171 SLPDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 D + K+I + +D+ +I + +K ++++ S L++ ++ Sbjct: 162 ENKD---MNKLIDRAISDKIKGFGNLKINLSEKAREFLIRN---SSGDGRFLLNSLEIAV 215 Query: 224 LSRGMGIT-RSLAAEVLKETQQ 244 LS +L +VL+ + Q Sbjct: 216 LSTDKVDNEVNLTLDVLENSMQ 237 >gi|332195805|gb|AEE33926.1| AAA-type ATPase-like protein [Arabidopsis thaliana] Length = 1043 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 55/153 (35%), Gaps = 48/153 (31%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF--------SNIAKSLDSILIDTRKP---- 110 P ++L GPSG+GK+ LA + ++ + S K + ++ K Sbjct: 787 PCNGILLFGPSGTGKTMLAKAVATEAGANLINMSMSRWFSEGEKYVKAVFSLASKISPSI 846 Query: 111 VLLEDIDLLDFNDTQLFH----------IIN----SIHQYDSSLLMTA------------ 144 + L++++ + H IIN ++ + L++ A Sbjct: 847 IFLDEVES-------MLHRYRLKTKNEFIINWDGLRTNEKERVLVLAATNRPFDLDEAVI 899 Query: 145 RTFPVSWGVCLPDLCSR---LKAATVVKISLPD 174 R P V LPD SR LK + PD Sbjct: 900 RRLPHRLMVGLPDARSRSKILKVILSKEDLSPD 932 >gi|326934708|ref|XP_003213427.1| PREDICTED: transitional endoplasmic reticulum ATPase-like, partial [Meleagris gallopavo] Length = 674 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 48/121 (39%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 123 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 182 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + ++++D + QL +++ + Q ++M A P S Sbjct: 183 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 242 Query: 155 L 155 L Sbjct: 243 L 243 Score = 39.0 bits (90), Expect = 0.58, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 378 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 434 >gi|307260915|ref|ZP_07542601.1| Replication-associated recombination protein A [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869482|gb|EFN01273.1| Replication-associated recombination protein A [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 443 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 40/203 (19%), Positives = 72/203 (35%), Gaps = 35/203 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I GP G+GK+ LA I + + R S + + I + ++ T Sbjct: 49 MIFWGPPGTGKTTLAEIIAHHFDAEVERLSAVTSGVKEIREAIERA----KLNRQTGRRT 104 Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N Q D +++ T L SR A + + Sbjct: 105 LLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNA---LLSR---AKIYIL 158 Query: 171 SLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + +V+ D R + +I+ + + + FA ++ M ++A Sbjct: 159 KPLQAVEIAQVLTNALYDKERGLGNESYYIEDNVIELLADYVNGDARFALNCLELMSDMA 218 Query: 224 LS--RGMGITRSLAAEVLKETQQ 244 +G + ++L AEVL E Q Sbjct: 219 EISPQGKHLNKALLAEVLGERQA 241 >gi|255540583|ref|XP_002511356.1| Transitional endoplasmic reticulum ATPase, putative [Ricinus communis] gi|223550471|gb|EEF51958.1| Transitional endoplasmic reticulum ATPase, putative [Ricinus communis] Length = 804 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 65/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP GSGK+ +A ++++ + F SN+ K+ + + Sbjct: 246 PPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 305 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + ++M A P S Sbjct: 306 APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSID-- 363 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PD+ +V+ + + + +++ Sbjct: 364 -PALR-RFGRFDREIDIGVPDEVGRLEVL--RIHTKNMKLAEEV 403 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 509 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 565 >gi|42562879|ref|NP_176404.2| AAA-type ATPase family protein [Arabidopsis thaliana] Length = 1025 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 55/153 (35%), Gaps = 48/153 (31%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF--------SNIAKSLDSILIDTRKP---- 110 P ++L GPSG+GK+ LA + ++ + S K + ++ K Sbjct: 769 PCNGILLFGPSGTGKTMLAKAVATEAGANLINMSMSRWFSEGEKYVKAVFSLASKISPSI 828 Query: 111 VLLEDIDLLDFNDTQLFH----------IIN----SIHQYDSSLLMTA------------ 144 + L++++ + H IIN ++ + L++ A Sbjct: 829 IFLDEVES-------MLHRYRLKTKNEFIINWDGLRTNEKERVLVLAATNRPFDLDEAVI 881 Query: 145 RTFPVSWGVCLPDLCSR---LKAATVVKISLPD 174 R P V LPD SR LK + PD Sbjct: 882 RRLPHRLMVGLPDARSRSKILKVILSKEDLSPD 914 >gi|298674999|ref|YP_003726749.1| AAA family ATPase [Methanohalobium evestigatum Z-7303] gi|298287987|gb|ADI73953.1| AAA family ATPase, CDC48 subfamily [Methanohalobium evestigatum Z-7303] Length = 758 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 26/164 (15%), Positives = 62/164 (37%), Gaps = 43/164 (26%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILIDTRKP 110 V+L GP G+GK+ LA +++S + S I + D +T Sbjct: 248 VLLQGPPGTGKTLLARAVANESDAYFISINGPEIMSKFYGESEQRIREVFDEAEKNTPAI 307 Query: 111 VLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP-- 156 + L+++D + QL +++ + + + +L+ A P + + L Sbjct: 308 IFLDELDSIAPKRAEVTGEVERRVVAQLLSLMDGLKERKNVILIGATNRPEALDIALRRP 367 Query: 157 ---DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 D +++ +PD + +++ R + + + + Sbjct: 368 GRFD--------REIELHVPDTEGRMEILQ--IHTRGMPLAEDV 401 Score = 39.4 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 3/52 (5%) Query: 49 IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 +A R + P V+ L GP G+GK+ LA +++S + + L Sbjct: 506 NAEAFRRLGVEA--PKGVM-LYGPPGTGKTMLAKAVANESDANFIAAKGSDL 554 >gi|239946415|gb|ACS36235.1| cell division cycle protein 48 [Guillardia theta] Length = 792 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 61/164 (37%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + +++ GP GSGK+ +A ++++ + F N+ K+ + Sbjct: 230 PPKGLLMYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESEDNLRKAFAEAEKN 289 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + ++M A P S Sbjct: 290 APSIIFIDEIDSIAPKRDKVNGEVERRIVSQLLTLMDGLKARSHIIVMAATNRPNSID-- 347 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + V I +PD+ +V+ + + + + Sbjct: 348 -PALR-RFGRFDREVDIGVPDETGRMEVL--RIHTKNMKLSDDV 387 Score = 39.0 bits (90), Expect = 0.60, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA +++ +S S L ++ + + E D Sbjct: 503 PSRGVLFYGPPGCGKTLLAKAIANECQSNFISIKGPELLTMWFGESEANVREVFDKA 559 >gi|256073899|ref|XP_002573265.1| cell division control protein 48 aaa family protein [Schistosoma mansoni] gi|238658441|emb|CAZ29497.1| cell division control protein 48 aaa family protein (transitional endoplasmic reticulum atpase), putative [Schistosoma mansoni] Length = 803 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 66/164 (40%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A +++S S F SN+ K+ + + Sbjct: 234 PPRGILLYGPPGTGKTLVARAVANESGSFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 293 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + ++++D + QL +++ + Q ++M A P S Sbjct: 294 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRSHVIVMAATNRPNS---V 350 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + ++I +PD + ++ + R I + + + Sbjct: 351 DPALR-RFGRFDREIEIGIPD--SIGRLEILRIHTRNIRLAEDV 391 Score = 38.6 bits (89), Expect = 0.74, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 507 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDIFDKA 563 >gi|242242900|ref|ZP_04797345.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus epidermidis W23144] gi|242233675|gb|EES35987.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus epidermidis W23144] Length = 423 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 72/201 (35%), Gaps = 40/201 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117 +I GP G GK+ +A S ++ + ++ ++ + + +LL++I Sbjct: 43 MIFYGPPGIGKTSIAKAISGSTQFKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIH 102 Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 L D L H+ N +L+ T + P + SR A + ++ Sbjct: 103 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 151 Query: 174 DDDFLEKVIVKMFAD--RQIF-----IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 + D + + + D R + +D+ Y + S ++ ++ LS Sbjct: 152 NQDDIRLALDRAINDKERGLSTYHPIVDEDAIEYFSTQ---SQGDVRSALNALELAVLSA 208 Query: 227 G------MGITRSLAAEVLKE 241 IT A + L++ Sbjct: 209 HIDEQNERHITLDDAKDCLQK 229 >gi|195997717|ref|XP_002108727.1| conserved hypothetical protein [Trichoplax adhaerens] gi|190589503|gb|EDV29525.1| conserved hypothetical protein [Trichoplax adhaerens] Length = 404 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 27/182 (14%), Positives = 63/182 (34%), Gaps = 38/182 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V+L GP G+GK+ LA + +++ST L + I ++ Sbjct: 184 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFLLAKEK 243 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151 ++++D + + + ++N + + ++ A Sbjct: 244 APAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSSNEIKVIAATNRVDIL 303 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ PD++ +++ R++ + + + R Sbjct: 304 DPAL--LRSGRLD--RKIEFPAPDEEARARILQ--IHSRKMNVSSGVNFEELARCTDDFN 357 Query: 211 FA 212 A Sbjct: 358 GA 359 >gi|91789641|ref|YP_550593.1| recombination factor protein RarA [Polaromonas sp. JS666] gi|91698866|gb|ABE45695.1| Recombination protein MgsA [Polaromonas sp. JS666] Length = 427 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 68/184 (36%), Gaps = 29/184 (15%) Query: 68 ILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKP------------VLL 113 IL GP G GK+ LA + + + S + + I + V + Sbjct: 43 ILWGPPGVGKTTLARLMASSFDAHFITISAVLGGVKDIREAVEQASIWQGQGGRRTIVFV 102 Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 +++ + + F + + A T S+ V L SR A V + Sbjct: 103 DEVHRFNKSQQDAFLPH---VESGLFTFIGATTENPSFEVNSA-LLSR---AVVYVLQPL 155 Query: 174 DDDFLEKVIVKMFADRQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM- 228 + L++++VK+ +R + I +V + A +L++ +++L ++ Sbjct: 156 VEADLKRIVVKVLEERALPAIESIADAAVDRLVAYAD---GDARRLLNTLESLGVAARSE 212 Query: 229 GITR 232 IT Sbjct: 213 KITV 216 >gi|295688943|ref|YP_003592636.1| AAA ATPase central domain-containing protein [Caulobacter segnis ATCC 21756] gi|295430846|gb|ADG10018.1| AAA ATPase central domain protein [Caulobacter segnis ATCC 21756] Length = 433 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 61/169 (36%), Gaps = 24/169 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G+GK+ +A + + K+ F I+ + D +K + T L Sbjct: 55 MILWGPPGTGKTTIARLLA-KAGGYEFQQISAVFSGVA-DLKKAFEQARARRMAGQSTLL 112 Query: 127 F----HIINSIHQYD---------SSLLMTARTFPV-SWGVCLPDLCSRLKAATVVKISL 172 F H N Q +L+ P L SR V + Sbjct: 113 FVDEIHRFNRAQQDGFLPFVEEGIVTLVGATTENPSFELNGA---LLSR---CQVFVLKR 166 Query: 173 PDDDFLEKVIVK--MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 +D LE+++ + +R + +D + + +V + + L + + Sbjct: 167 LTEDSLEQLLQRAEAAENRLLPVDAEARSSLVAMADGDGRYLLTLAETL 215 >gi|229581753|ref|YP_002840152.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus Y.N.15.51] gi|228012469|gb|ACP48230.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus Y.N.15.51] Length = 759 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 25/163 (15%), Positives = 58/163 (35%), Gaps = 33/163 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTR-- 108 P + V+L GP G GK+ LA +++ + + + L I + Sbjct: 224 PPKGVLLYGPPGVGKTLLARALANEIGAYFTSINGPEIMSKFYGESEQRLREIFEEAEKN 283 Query: 109 --KPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ I +++ A P + Sbjct: 284 APAIIFIDEIDAIAPKREEVTGEVEKRVVSQLLTLMDGIKGRGKVIVIGATNRPDA---V 340 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L + ++I PD ++++ R + + + + Sbjct: 341 DPALRRPGRFDREIEIRPPDAKARKEILQVHT--RNMPLAEDV 381 Score = 38.2 bits (88), Expect = 0.96, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 19/32 (59%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + ++L GP G+GK+ LA + +S + + Sbjct: 499 PPKGILLFGPPGTGKTMLAKAVATESGANFIA 530 >gi|27544686|dbj|BAC55038.1| DnaA [Mycobacterium abscessus] Length = 175 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 8/56 (14%), Positives = 20/56 (35%), Gaps = 3/56 (5%) Query: 31 SFPRCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI 83 + + ++ ++ A + P+ + + G SG GK+ L + Sbjct: 102 DTSLNARYTFESFVIGASNRFSHAAAVAVSEAPARAYNPLFIWGESGLGKTHLLHA 157 >gi|27544724|dbj|BAC55057.1| DnaA [Mycobacterium smegmatis] Length = 185 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 3/50 (6%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI 83 + D ++ ++ A + P+R + + G SG GK+ L + Sbjct: 118 RYTFDTFVIGASNRFAHAATLAIAEAPARAYNPLFIWGESGLGKTHLLHA 167 >gi|88703365|ref|ZP_01101081.1| conserved hypothetical protein [Congregibacter litoralis KT71] gi|88702079|gb|EAQ99182.1| conserved hypothetical protein [Congregibacter litoralis KT71] Length = 126 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 2/68 (2%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P +IL GP G GK+ LA + D S S A I R+ V + + + Sbjct: 48 PLHSMILWGPPGVGKTTLAQLLCDASGSRMVKLSAVMDGVKAI--REAVSVGEAERGAGR 105 Query: 123 DTQLFHII 130 LF + Sbjct: 106 QCVLFVLW 113 >gi|305663571|ref|YP_003859859.1| AAA family ATPase, CDC48 subfamily [Ignisphaera aggregans DSM 17230] gi|304378140|gb|ADM27979.1| AAA family ATPase, CDC48 subfamily [Ignisphaera aggregans DSM 17230] Length = 737 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 22/163 (13%), Positives = 57/163 (34%), Gaps = 33/163 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106 P + ++L GP G GK+ LA ++++ + + + D + Sbjct: 230 PPKGILLYGPPGCGKTLLAKALANETGAYFIPINGPEIMSKFYGESEQRLRQIFDEAKKN 289 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID L QL +++ + + +++ A P + Sbjct: 290 APAIIFIDEIDALAPKREEVVGEVEKRVVAQLLTLMDGLEERGRVIVIGATNRPDA---V 346 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L + +++ PD +++ R + + + Sbjct: 347 DPALRRPGRFDREIEVPPPDKKARREILAVH--TRNVPLADDV 387 Score = 41.7 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 18/32 (56%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + ++L GP G GK+ LA + +S + + Sbjct: 504 PPKGILLYGPPGCGKTLLAKAAATESGANFIA 535 >gi|220840531|emb|CAX15265.1| proteasome (prosome, macropain) 26S subunit ATPase 3 [Mus musculus] Length = 451 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 25/183 (13%), Positives = 68/183 (37%), Gaps = 38/183 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 222 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 281 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + + ++N + Q ++ + ++ A Sbjct: 282 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 341 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ +P+++ +++ R++ + + + R Sbjct: 342 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 395 Query: 211 FAE 213 A+ Sbjct: 396 GAQ 398 >gi|157876732|ref|XP_001686709.1| Transitional endoplasmic reticulum ATPase; valosin-containing protein homolog [Leishmania major gi|68129784|emb|CAJ09090.1| putative Transitional endoplasmic reticulum ATPase [Leishmania major strain Friedlin] Length = 784 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 67/184 (36%), Gaps = 54/184 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP GSGK+ +A ++++ + F SN+ K+ + + Sbjct: 227 PPRGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 286 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148 + +++ID + QL +++ + ++M A P Sbjct: 287 APSIIFIDEIDSIAPKREKAQGEVEKRIVSQLLTLMDGMKSRSQVIVMAATNRPNTIDPA 346 Query: 149 --------VSWGVCLPDLCSRLKAATVVKIS-----LPDDDFLEKVIVKMFADRQIFIDK 195 + +PD RL+ +++I L DD L K+ D F+ Sbjct: 347 LRRFGRFDRELDIGVPDETGRLE---IIRIHTKNMKLADDIDL----EKVAKDSHGFVGA 399 Query: 196 KLAA 199 LA Sbjct: 400 DLAQ 403 Score = 37.8 bits (87), Expect = 1.5, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 24/57 (42%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P + V+ GP G GK+ LA + + ++ S L ++ + + + D Sbjct: 500 PPKGVLFYGPPGCGKTLLAKAIATECQANFISIKGPELLTMWFGESEANVRDVFDKA 556 >gi|56551017|ref|YP_161856.1| recombination factor protein RarA [Zymomonas mobilis subsp. mobilis ZM4] gi|56542591|gb|AAV88745.1| AAA ATPase central domain protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 449 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 38/255 (14%), Positives = 88/255 (34%), Gaps = 38/255 (14%) Query: 10 FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLL----VHSAIEQAVRLIDSWPSWPSR 65 + +K P+N+ + D++ V R++ + Sbjct: 11 LVFTENEKQPLPENRP----LADILRPK-HLSDVIGQAHVTGENGIIGRMV---AAGRLS 62 Query: 66 VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125 +IL GP G+GK+ +A + ++ RF ++ + + + E T Sbjct: 63 SLILWGPPGTGKTSIAQLLAESVG-MRFEMVSAIFSGVADLKKIFLKAEH-HRQQGRQTL 120 Query: 126 LF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKIS 171 LF H N + + +L+ T + L SR A VV ++ Sbjct: 121 LFIDEIHRFNKGQQDSFLPYIENGTFVLVGATTENPSFALNAA---LLSR---AQVVTLN 174 Query: 172 LPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229 D++ L ++ + + +D+ ++ + F + + LA++ Sbjct: 175 RLDEEALGLLLERAETVSGQLLPVDENARKALIASADGDGRFLLNQAEIL--LAMNLTKS 232 Query: 230 ITRSLAAEVLKETQQ 244 ++ A++L++ Sbjct: 233 LSVPELAQILQKRMA 247 >gi|32475212|ref|NP_868206.1| recombination factor protein RarA [Rhodopirellula baltica SH 1] gi|32445753|emb|CAD78484.1| conserved hypothetical protein-putative a helicase [Rhodopirellula baltica SH 1] Length = 439 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 58/172 (33%), Gaps = 24/172 (13%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 ++L GP G+GK+ LA++ + + S + A S + + + D Sbjct: 53 GSILLHGPPGTGKTTLAHLIASEQNSELITLNAISSGVKDVREVLAKARDRVSAGD-PRP 111 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + L+ A T + V L SR + + + Sbjct: 112 LLFIDEIHRFNKSQQDALLADVESGIISLIGATTSNPYFAVNAA-LISR---SQLFGLEP 167 Query: 173 PDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVD 217 + + ++ + DR + ID+ Y+ + A ++ Sbjct: 168 VSVEDMRSLLKRAITDRECGLGNQNVTIDEDAIDYLSSASDGDARKALTALE 219 >gi|322503495|emb|CBZ38580.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 784 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 67/184 (36%), Gaps = 54/184 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP GSGK+ +A ++++ + F SN+ K+ + + Sbjct: 227 PPRGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 286 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148 + +++ID + QL +++ + ++M A P Sbjct: 287 APAIIFIDEIDSIAPKREKAQGEVEKRIVSQLLTLMDGMKSRSQVIVMAATNRPNTIDPA 346 Query: 149 --------VSWGVCLPDLCSRLKAATVVKIS-----LPDDDFLEKVIVKMFADRQIFIDK 195 + +PD RL+ +++I L DD L K+ D F+ Sbjct: 347 LRRFGRFDRELDIGVPDETGRLE---IIRIHTKNMKLADDIDL----EKVAKDSHGFVGA 399 Query: 196 KLAA 199 LA Sbjct: 400 DLAQ 403 Score = 37.4 bits (86), Expect = 1.7, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 24/57 (42%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P + V+ GP G GK+ LA + + ++ S L ++ + + + D Sbjct: 500 PPKGVLFYGPPGCGKTLLAKAIATECQANFISIKGPELLTMWFGESEANVRDVFDKA 556 >gi|307251991|ref|ZP_07533892.1| Replication-associated recombination protein A [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860683|gb|EFM92695.1| Replication-associated recombination protein A [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 443 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 40/203 (19%), Positives = 72/203 (35%), Gaps = 35/203 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I GP G+GK+ LA I + + R S + + I + ++ T Sbjct: 49 MIFWGPPGTGKTTLAEIIAHHFDAEVERLSAVTSGVKEIREAIERA----KLNRQTGRRT 104 Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N Q D +++ T L SR A + + Sbjct: 105 LLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNA---LLSR---AKIYIL 158 Query: 171 SLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + +V+ D R + +I+ + + + FA ++ M ++A Sbjct: 159 KPLQAVEIAQVLTNALYDKERGLGNESYYIEDNVIELLADYVNGDARFALNCLELMSDMA 218 Query: 224 LS--RGMGITRSLAAEVLKETQQ 244 +G + ++L AEVL E Q Sbjct: 219 EISPQGKHLNKALLAEVLGERQA 241 >gi|225011345|ref|ZP_03701798.1| Chromosomal replication initiator DnaA [Flavobacteria bacterium MS024-3C] gi|225004507|gb|EEG42476.1| Chromosomal replication initiator DnaA [Flavobacteria bacterium MS024-3C] Length = 239 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 14/78 (17%) Query: 10 FFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--- 66 F +P + E QL S D+ L + A + + P Sbjct: 125 FVIPGIRNI----KIESQL------NPNYSFDNFLEGDSNRLARSAGMAVANKPGGTSFN 174 Query: 67 -VILVGPSGSGKSCLANI 83 +++ G G GK+ LA+ Sbjct: 175 PLLIFGGVGLGKTHLAHA 192 >gi|189065396|dbj|BAG35235.1| unnamed protein product [Homo sapiens] Length = 806 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 64/163 (39%), Gaps = 44/163 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296 Query: 107 TRKPVLLEDIDLLD-FND-----------TQLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + ++++D + + +QL +++ + Q ++M A P S Sbjct: 297 APAIIFIDELDAIAPIREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356 Query: 152 -----------GVCLPDLCSRLK--AATVVKISLPDDDFLEKV 181 + +PD RL+ + L DD LE+V Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399 Score = 39.0 bits (90), Expect = 0.60, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566 >gi|15232908|ref|NP_186894.1| cell division protein ftsH, putative [Arabidopsis thaliana] gi|6957708|gb|AAF32452.1| cell division protein FtsH-like protein [Arabidopsis thaliana] gi|17065470|gb|AAL32889.1| cell division protein FtsH-like protein [Arabidopsis thaliana] gi|30725442|gb|AAP37743.1| At3g02450 [Arabidopsis thaliana] gi|332640288|gb|AEE73809.1| putative cell division protein ftsH [Arabidopsis thaliana] Length = 622 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 78/212 (36%), Gaps = 37/212 (17%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110 R V+LVGP G+GK+ LA + ++ FS A + + Sbjct: 368 RGVLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFVELFVGRGAARIRDLFNAARKNSP 427 Query: 111 --VLLEDIDLLDF-------ND-----TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL- 155 + ++++D + ++ QL ++ +++ A P + L Sbjct: 428 SIIFIDELDAVGGKRGRSFNDERDQTLNQLLTEMDGFESDTKVIVIAATNRPEALDSALC 487 Query: 156 -PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 P SR V ++ PD + K++ D + D L +V + V A Sbjct: 488 RPGRFSR-----KVLVAEPDQEGRRKILAIHLRDVPLEEDAFLICDLVASLTPGFVGA-D 541 Query: 215 LVDKMDNLALSRGMGITRSLAAE-VLKETQQC 245 L + ++ AL ++A E +++ ++ Sbjct: 542 LANIVNEAALLAARRGGEAVAREDIMEAIERA 573 >gi|15231775|ref|NP_190891.1| cell division cycle protein 48, putative / CDC48, putative [Arabidopsis thaliana] gi|28201772|sp|Q9SCN8|CD48D_ARATH RecName: Full=Cell division control protein 48 homolog D; Short=AtCDC48d; AltName: Full=Transitional endoplasmic reticulum ATPase D gi|6630743|emb|CAB64226.1| CDC48-like protein [Arabidopsis thaliana] gi|110737510|dbj|BAF00697.1| CDC48 - like protein [Arabidopsis thaliana] gi|332645529|gb|AEE79050.1| cell division control protein 48-D [Arabidopsis thaliana] Length = 815 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 64/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP GSGK+ +A ++++ + F SN+ K+ + + Sbjct: 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN 300 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + ++M A P S Sbjct: 301 APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSID-- 358 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PD+ +V+ + + + + + Sbjct: 359 -PALR-RFGRFDREIDIGVPDEIGRLEVL--RIHTKNMKLAEDV 398 Score = 39.7 bits (92), Expect = 0.40, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 514 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 570 >gi|18414193|ref|NP_568114.1| cell division cycle protein 48, putative / CDC48, putative [Arabidopsis thaliana] gi|28201771|sp|Q9LZF6|CD48E_ARATH RecName: Full=Cell division control protein 48 homolog E; Short=AtCDC48e; AltName: Full=Transitional endoplasmic reticulum ATPase E gi|26449352|dbj|BAC41803.1| putative transitional endoplasmic reticulum ATPase [Arabidopsis thaliana] gi|26452166|dbj|BAC43171.1| putative transitional endoplasmic reticulum ATPase [Arabidopsis thaliana] gi|30102750|gb|AAP21293.1| At5g03340 [Arabidopsis thaliana] gi|332003204|gb|AED90587.1| cell division control protein 48-e [Arabidopsis thaliana] Length = 810 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 64/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP GSGK+ +A ++++ + F SN+ K+ + + Sbjct: 240 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN 299 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + ++M A P S Sbjct: 300 APSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSID-- 357 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PD+ +V+ + + + + + Sbjct: 358 -PALR-RFGRFDREIDIGVPDEIGRLEVL--RIHTKNMKLAEDV 397 Score = 40.1 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 513 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 569 >gi|332531345|ref|ZP_08407253.1| recombination factor protein RarA [Hylemonella gracilis ATCC 19624] gi|332039209|gb|EGI75627.1| recombination factor protein RarA [Hylemonella gracilis ATCC 19624] Length = 436 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 60/176 (34%), Gaps = 23/176 (13%) Query: 68 ILVGPSGSGKSCLANIWSDKSRSTRFS---------------NIAKSLDSILIDTRKPVL 112 IL GP G+GK+ +A + +D + S +A++ L R V Sbjct: 51 ILWGPPGTGKTTIARLMADAFGAQFISISAVLGGVKDIREAVELAEAARDGLQQQRTIVF 110 Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 ++++ + + F + + A T S+ V L SR A V + Sbjct: 111 VDEVHRFNKSQQDAFLPH---VESGLFTFIGATTENPSFEVNSA-LLSR---AAVYVLQA 163 Query: 173 P-DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 +DD + V+ D ++ ++ + ++ + A + Sbjct: 164 LTEDDLKQIVLRARGIDAVPPLEDAALDRLIAYADGDARRLLNTLETLSVAARQQK 219 >gi|253732284|ref|ZP_04866449.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724073|gb|EES92802.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 415 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 73/201 (36%), Gaps = 40/201 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117 +I GP G GK+ +A S ++ + ++ ++ + + +LL++I Sbjct: 34 MIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIH 93 Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 L D L H+ N +L+ T + P + SR A + ++ Sbjct: 94 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 142 Query: 174 DDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 +D+ + + + + D Q ID+ Y + S ++ ++ LS Sbjct: 143 NDEDVRQALTRAIEDDENGLKTYQPKIDEDAMTYFSTQ---SQGDVRSALNALELAVLSA 199 Query: 227 G------MGITRSLAAEVLKE 241 +T A + L++ Sbjct: 200 DNDKDGYRHVTLQDAKDCLQK 220 >gi|154491485|ref|ZP_02031111.1| hypothetical protein PARMER_01094 [Parabacteroides merdae ATCC 43184] gi|154088460|gb|EDN87505.1| hypothetical protein PARMER_01094 [Parabacteroides merdae ATCC 43184] Length = 246 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 41/190 (21%), Positives = 68/190 (35%), Gaps = 36/190 (18%) Query: 65 RVVILVGPSGSGKSCLANIWSD--KSRSTRFSNIA---KSLDSILIDTRKPVLLEDIDLL 119 IL GP G GK+ LA I + K S + K + +L RK + + Sbjct: 40 PSFILWGPPGVGKTTLAKIVATTLKRPFYTLSAVTSGVKEVREVLESARKQKFFDSKPPI 99 Query: 120 DF-NDTQLFHIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 F ++ H N + L+ A T S+ V P L SR V + Sbjct: 100 LFIDEI---HRFNKSQQDSLLGAVEQGVVTLIGATTENPSFEVISP-LLSR---CQVYIL 152 Query: 171 SLPDDDFLEKVIVKMFA------DRQIFI--DKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 D L+ ++ + A R+I + + L + S A KL++ +D + Sbjct: 153 QPMTDGELQTLLDRALATDPELKTREIEVQETEALFRF-------SGGDARKLLNILDII 205 Query: 223 ALSRGMGITR 232 + +T Sbjct: 206 TGAANGKVTI 215 >gi|47076713|dbj|BAD18270.1| transposase B of IS643 [Bacillus firmus] Length = 254 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 50/112 (44%), Gaps = 22/112 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDTR 108 +IL+GP G GK+ +A ++ F ++ ++ I + Sbjct: 104 LILLGPPGIGKTYIAVGLGLEAVHRGFHVYFVTMGELIQLLKTEEYLNKSKVQLKRIRSS 163 Query: 109 KPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 V+++D+ + + + FH+IN +++ SS+++T+ P WG + D Sbjct: 164 DLVIIDDLMYMAMDQREANLFFHLINHLYER-SSIILTSNKSPDEWGNLIGD 214 >gi|315174320|gb|EFU18337.1| recombination factor protein RarA [Enterococcus faecalis TX1346] Length = 425 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 35/199 (17%), Positives = 73/199 (36%), Gaps = 36/199 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117 +IL GP G+GK+ +A+ + + + R N A + + +LL++I Sbjct: 42 MILYGPPGTGKTSIASAIAGSTNYAFRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIH 101 Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 LD D L H+ N ++M T + P + SR + ++ + Sbjct: 102 RLDKTKQDFLLPHLEN------GRIIMIGATTENPYITINPAIRSR---TQIFEVKPLTE 152 Query: 176 DFLEKVIVKMFAD--RQI-FIDKKLAAYIVQRMERSLV-FAEKLVDKMDNLALSRGM--- 228 +++ I + D R + L +Q + R+ ++ ++ L+ Sbjct: 153 TDIQQAIQEALTDSTRGLGDYPVHLEEKALQHLTRATNGDLRSALNGLE---LAVKSTPK 209 Query: 229 ------GITRSLAAEVLKE 241 IT + E ++ Sbjct: 210 NEQGEIKITLPIIEECMQR 228 >gi|302829468|ref|XP_002946301.1| hypothetical protein VOLCADRAFT_78972 [Volvox carteri f. nagariensis] gi|300269116|gb|EFJ53296.1| hypothetical protein VOLCADRAFT_78972 [Volvox carteri f. nagariensis] Length = 815 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 61/164 (37%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP GSGK+ +A ++++ + SN+ K + Sbjct: 237 PPKGILLYGPPGSGKTLIARAVANETGAFFVVVNGPEIMSKLAGESESNLRKVFQEAEKN 296 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + ++++D + QL +++ + +++ A P S Sbjct: 297 APSIIFIDEVDSIAPKRDKTQGEVERRIVSQLLTLMDGLKSRAHVIVIAATNRPNSIDAA 356 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L R + + I +PD+ +V+ + + +D+ + Sbjct: 357 LR----RFGRFDREIDIGVPDETGRLEVL--RIHTKNMKLDEDV 394 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARG 568 >gi|21592745|gb|AAM64694.1| cell division protein FtsH-like protein [Arabidopsis thaliana] Length = 622 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 78/212 (36%), Gaps = 37/212 (17%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110 R V+LVGP G+GK+ LA + ++ FS A + + Sbjct: 368 RGVLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFVELFVGRGAARIRDLFNAARKNSP 427 Query: 111 --VLLEDIDLLDF-------ND-----TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL- 155 + ++++D + ++ QL ++ +++ A P + L Sbjct: 428 SIIFIDELDAVGGKRGRSFNDERDQTLNQLLTEMDGFESDTKVIVIAATNRPEALDSALC 487 Query: 156 -PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 P SR V ++ PD + K++ D + D L +V + V A Sbjct: 488 RPGRFSR-----KVLVAEPDQEGRRKILAIHLRDVPLEEDAFLICDLVASLTPGFVGA-D 541 Query: 215 LVDKMDNLALSRGMGITRSLAAE-VLKETQQC 245 L + ++ AL ++A E +++ ++ Sbjct: 542 LANIVNEAALLAARRGGEAVAREDIMEAIERA 573 >gi|284048554|ref|YP_003398893.1| IstB domain protein ATP-binding protein [Acidaminococcus fermentans DSM 20731] gi|283952775|gb|ADB47578.1| IstB domain protein ATP-binding protein [Acidaminococcus fermentans DSM 20731] Length = 284 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 33/197 (16%), Positives = 72/197 (36%), Gaps = 43/197 (21%) Query: 15 KQKNDQPKNKEEQ--LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW--PSRVVILV 70 +++ ++ + EQ L F C + V +A+ + P R L Sbjct: 58 QRREERNRQLLEQAGLPEMFLSCT---FSEYQVEPGNRKALETVRKLAREKRPGRGFFLH 114 Query: 71 GPSGSGKSCLANIWS----DKSRSTRFSNIAKSLDSILIDTRK-------------PVLL 113 GPSG GK+ LA +++ + ++ RF+ +A L+ + + + ++L Sbjct: 115 GPSGVGKTMLAVLFAKELLAQGKAVRFTTVAGLLNQLRRNIQGDWNQRMDQYQEVPCLIL 174 Query: 114 EDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVC---------------L 155 +D+ + QLF +I++ + + T+ + + Sbjct: 175 DDLGTEKVTEWGLEQLFLLIDARYTARRQTVFTSNFSLQALQERFHRARNKTGWEERRTI 234 Query: 156 PDLCSRLKAATVVKISL 172 L SR+ V++ Sbjct: 235 DRLISRI-GGMTVELEA 250 >gi|227827953|ref|YP_002829733.1| ATPase AAA [Sulfolobus islandicus M.14.25] gi|229585220|ref|YP_002843722.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.16.27] gi|238620179|ref|YP_002915005.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.16.4] gi|227459749|gb|ACP38435.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.14.25] gi|228020270|gb|ACP55677.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.16.27] gi|238381249|gb|ACR42337.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.16.4] gi|323475040|gb|ADX85646.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus REY15A] gi|323477771|gb|ADX83009.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus HVE10/4] Length = 759 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 25/163 (15%), Positives = 58/163 (35%), Gaps = 33/163 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTR-- 108 P + V+L GP G GK+ LA +++ + + + L I + Sbjct: 224 PPKGVLLYGPPGVGKTLLARALANEIGAYFTSINGPEIMSKFYGESEQRLREIFEEAEKN 283 Query: 109 --KPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ I +++ A P + Sbjct: 284 APAIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGIKGRGKVIVIGATNRPDA---V 340 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L + ++I PD ++++ R + + + + Sbjct: 341 DPALRRPGRFDREIEIRPPDAKARKEILQVHT--RNMPLAEDV 381 Score = 38.2 bits (88), Expect = 0.97, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 19/32 (59%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + ++L GP G+GK+ LA + +S + + Sbjct: 499 PPKGILLFGPPGTGKTMLAKAVATESGANFIA 530 >gi|241948511|ref|XP_002416978.1| DNA-dependent ATPase (MGS1), putative; homolog of human Werner helicase interacting protein (WHIP), putative [Candida dubliniensis CD36] gi|223640316|emb|CAX44566.1| DNA-dependent ATPase (MGS1), putative [Candida dubliniensis CD36] Length = 677 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 40/258 (15%), Positives = 73/258 (28%), Gaps = 58/258 (22%) Query: 12 VPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLL-----VHSAIEQAVRLIDSWPSWPSRV 66 K K ++ + + S DD V +I + Sbjct: 149 FLKKAKEINELKRQASIPLAHRLRPK-SLDDFFGQEKLVGK-NGALRNIIQAD---IIPS 203 Query: 67 VILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 +L G G GK+ LA I + + + + AK L + + E+ L Sbjct: 204 FLLWGVPGIGKTSLARIIAKTTSCKFVELSGIDSNAKRLKEVFVQA------ENHKNLSG 257 Query: 122 NDTQLF----HIINSIHQYDSSLLM-------------TARTFPVSWGVCLPDLCSRLKA 164 T LF H N Q LL+ T + L SR+ Sbjct: 258 QRTILFLDEIHRFNKAVQD---LLLPVIEKGTLTVIGATTENPSFNLNNA---LLSRM-- 309 Query: 165 ATVVKISLPD-DDFLEKVIVKMFADRQ----------IFIDKKLAAYIVQRMERSLVFAE 213 + + D ++ + +F + I + K YI + A Sbjct: 310 -HTFVMEPLNVDSLIKILTRALFEVNRVRKNLYGLHYISLQKDAYHYIAELCMGDSRVAL 368 Query: 214 KLVDKMDNLALSRGMGIT 231 +++ ++ + T Sbjct: 369 NILETINAYLSAEKFKNT 386 >gi|87308267|ref|ZP_01090408.1| chromosomal replication initiator protein DnaA [Blastopirellula marina DSM 3645] gi|87288824|gb|EAQ80717.1| chromosomal replication initiator protein DnaA [Blastopirellula marina DSM 3645] Length = 372 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 36/240 (15%), Positives = 79/240 (32%), Gaps = 50/240 (20%) Query: 43 LLVHSAIE---QAVRLIDSW-PSWPSRVVILVGPSGSGKSCLANIWSDK----------- 87 L AV +D P W V+ GP+ +GKS LA + Sbjct: 40 FLGGPENRLVRTAVEALDHPHPPW--NPVVFYGPTATGKSHLAAGLLARWKQSHPDSQVV 97 Query: 88 --SRS---TRFSNIAKSLDSI----LIDTRKPVLLEDIDLLD---FNDTQLFHIINSIHQ 135 + + + A+ + + + + +L++++ L L ++ + Sbjct: 98 TTTGADFSRTITTAARRGEPVDFMSIWQSVDALLIDNLHELANFPSAQELLVLRLDELIA 157 Query: 136 YDSSLLMTARTFPVSWGVCL-PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194 D +L T P+ L L SRL + +V + P + + + Q+ + Sbjct: 158 SDRLVLATCVGNPLE-NFSLSRRLVSRLSSGLLVPVEPPSAATRQALALHFAMQHQVDMT 216 Query: 195 ---------------KKLAAYIVQRMERSLVFAEKL--VDKMDNLALSRGMGITRSLAAE 237 +L +++ R +L + ++D +L+ I+ + Sbjct: 217 AAAAKQLAEAFSTNLPELQGMLLELFAREFGSTPQLGKMRRID--SLAARRFISVKVTGR 274 >gi|68468917|ref|XP_721517.1| hypothetical protein CaO19.3019 [Candida albicans SC5314] gi|68469463|ref|XP_721246.1| hypothetical protein CaO19.10537 [Candida albicans SC5314] gi|46443155|gb|EAL02439.1| hypothetical protein CaO19.10537 [Candida albicans SC5314] gi|46443437|gb|EAL02719.1| hypothetical protein CaO19.3019 [Candida albicans SC5314] Length = 678 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 43/256 (16%), Positives = 73/256 (28%), Gaps = 58/256 (22%) Query: 16 QKNDQPKNKEEQLFFSFPRCLG-ISRDDLL-----VHSAIEQAVRLIDSWPSWPSRVVIL 69 QK + K + Q L S DD V +I + +L Sbjct: 150 QKAKEIKELKRQASIPLAHRLRPKSLDDFFGQEKLVGE-NGALRNIIQAD---IIPSFLL 205 Query: 70 VGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 G G GK+ LA I + + + + AK L + + E+ L T Sbjct: 206 WGVPGIGKTSLARIIAKTTSCKFVELSGIDSNAKRLKEVFVQA------ENHKNLSGQRT 259 Query: 125 QLF----HIINSIHQYDSSLLM-------------TARTFPVSWGVCLPDLCSRLKAATV 167 LF H N Q LL+ T + L SR+ Sbjct: 260 ILFLDEIHRFNKAVQD---LLLPVIEKGTLTVIGATTENPSFNLNNA---LLSRM---HT 310 Query: 168 VKISLPD-DDFLEKVIVKMFADRQ----------IFIDKKLAAYIVQRMERSLVFAEKLV 216 + D ++ + +F + I + K YI + A ++ Sbjct: 311 FVMEPLTVDSLIKILTRALFEVNRVRKNLYGLHYISLQKDAYHYIAELCMGDSRVALNIL 370 Query: 217 DKMDNLALSRGMGITR 232 + ++ + T Sbjct: 371 ETINAYLSADKFKSTV 386 >gi|303249802|ref|ZP_07336006.1| recombination factor protein RarA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302651369|gb|EFL81521.1| recombination factor protein RarA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 446 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 40/203 (19%), Positives = 72/203 (35%), Gaps = 35/203 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I GP G+GK+ LA I + + R S + + I + ++ T Sbjct: 52 MIFWGPPGTGKTTLAEIIAHHFDAEVERLSAVTSGVKEIREAIERA----KLNRQTGRRT 107 Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N Q D +++ T L SR A + + Sbjct: 108 LLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNA---LLSR---AKIYIL 161 Query: 171 SLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + +V+ D R + +I+ + + + FA ++ M ++A Sbjct: 162 KPLQAVEIAQVLTNALYDKERGLGNESYYIEDNVIELLADYVNGDARFALNCLELMSDMA 221 Query: 224 LS--RGMGITRSLAAEVLKETQQ 244 +G + ++L AEVL E Q Sbjct: 222 EISPQGKHLNKALLAEVLGERQA 244 >gi|293603854|ref|ZP_06686269.1| ISPsy20 transposase [Achromobacter piechaudii ATCC 43553] gi|292817691|gb|EFF76757.1| ISPsy20 transposase [Achromobacter piechaudii ATCC 43553] Length = 263 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 31/143 (21%), Positives = 63/143 (44%), Gaps = 24/143 (16%) Query: 32 FPRCLGISRDDLLVHSAIEQAVRLI-DSWPSWPSRVVILVGPSGSGKSCLANIWSDKS-- 88 FP + D E VR + P+ V+LVG G+GK+ LA ++ + Sbjct: 65 FPAYRDLQGFDFGCSEVNEALVRQLHRGEFIEPAHNVVLVGGPGTGKTHLATAFAVHAIE 124 Query: 89 ---RSTRFSNIAKSLDSILIDTRKP--------------VLLEDIDLLDFNDTQ---LFH 128 R RF + + ++++ ++ + V+L+++ L F+ LFH Sbjct: 125 HLRRRVRFFSTIELVNTLELEKQAGKAGHLANRLMHSHVVILDELGYLPFSQAGGALLFH 184 Query: 129 IINSIHQYDSSLLMTARTFPVSW 151 +I+ ++++ +SL++T W Sbjct: 185 LISKLYEH-TSLIITTNLSFAEW 206 >gi|330038670|ref|XP_003239665.1| 26S protease regulatory SU 6A [Cryptomonas paramecium] gi|327206589|gb|AEA38767.1| 26S protease regulatory SU 6A [Cryptomonas paramecium] Length = 395 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G GK+ LA + ++ +T A L + I ++ E Sbjct: 175 PPKGVLLYGPPGLGKTLLARACAAQTDATFLKIAASQLVQMYIGEGASLVRE 226 >gi|297661889|ref|XP_002809450.1| PREDICTED: nuclear valosin-containing protein-like, partial [Pongo abelii] Length = 728 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 60/168 (35%), Gaps = 41/168 (24%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P R V+L GP G GK+ LA+ + + A + + + + Sbjct: 297 PPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFEQAVSN 356 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151 + +++ID + QL + N++ L++ A P S Sbjct: 357 APCIIFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSL 416 Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKK 196 P L +A + + +PD+ E++ K A++ + + + Sbjct: 417 D---PALR---RAGRFDREICLGIPDEASRERINFKHCAEK-LRLPQA 457 >gi|169824318|ref|YP_001691929.1| ATPase [Finegoldia magna ATCC 29328] gi|167831123|dbj|BAG08039.1| ATPase related to the helicase subunit of the Holliday junction resolvase [Finegoldia magna ATCC 29328] Length = 431 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 69/181 (38%), Gaps = 31/181 (17%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLL 119 +I GP G+GK+ LA I S+++ S SN K + ++ + + + + + Sbjct: 53 PSMIFYGPPGTGKTTLAEIISNQTNSLFERLSAISNGVKDIREVISTAKTNLSMYNKKTV 112 Query: 120 DF-NDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 F ++ H N + + L+ A T + V L SR ++++ Sbjct: 113 LFIDEI---HRFNKSQQDALLGYVEDGTITLIGATTENPFFEVNKA-LLSR---CQIIEL 165 Query: 171 SLPDDDFLEKVIV------KMFADRQIFIDKKLAAYIVQRME---RS-LVFAEKLVDKMD 220 D+ + +I K + I ID+K +V RS L E V+ D Sbjct: 166 KPLTDNDIRNIIENALTEDKKLKEMNIQIDEKAIDVLVNSANGDARSALNALEIAVESTD 225 Query: 221 N 221 Sbjct: 226 Q 226 >gi|27544694|dbj|BAC55042.1| DnaA [Mycobacterium chelonae] Length = 175 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 8/56 (14%), Positives = 20/56 (35%), Gaps = 3/56 (5%) Query: 31 SFPRCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI 83 + + ++ ++ A + P+ + + G SG GK+ L + Sbjct: 102 DTSLNARYTFESFVIGASNRFSHAAAVAVSEAPARAYNPLFIWGESGLGKTHLLHA 157 >gi|47076486|dbj|BAD18149.1| transposase B of IS643 [Bacillus halodurans] Length = 255 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 49/112 (43%), Gaps = 22/112 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDTR 108 +IL+GP G GK+ +A ++ F ++ ++ I Sbjct: 105 LILLGPPGIGKTYIAIGLGLEAVYRGFHVYFATMGELVQLLKSEEYLNKSKVQLKRIRNA 164 Query: 109 KPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 V+++D+ + + + FH+IN +++ SS+++T+ P WG + D Sbjct: 165 DLVIIDDLMYMAMDQREANLFFHLINHLYER-SSIILTSNKSPEEWGHLIGD 215 >gi|68064516|ref|XP_674242.1| hypothetical protein [Plasmodium berghei strain ANKA] gi|56492674|emb|CAH95634.1| conserved hypothetical protein [Plasmodium berghei] Length = 512 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 36/177 (20%), Positives = 67/177 (37%), Gaps = 27/177 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS--------------LDSILIDTRKPVL 112 +IL GP GSGKS L N+ +K+ + + + ++ L R + Sbjct: 195 LILCGPPGSGKSSLINVIKNKTHNLFITLFHLNNFNTEIRRIYDQSIINYKLSKRRMILC 254 Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 ++DI+ L+ + H++ + + LL T P + L SR + +S Sbjct: 255 IKDINRLNKPQQE--HLL-LVLKKGYFYLLATCLYNP--MNILNASLSSR---CLYLYLS 306 Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228 D L +I ++ I I+ I+ S A ++ +D A+ Sbjct: 307 PYDKIELALIIKRIINKLNIEIEDNALNVIISH---SSGDARVAINIID-FAIQHMR 359 >gi|70944893|ref|XP_742328.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56521244|emb|CAH79373.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi] Length = 438 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 36/177 (20%), Positives = 67/177 (37%), Gaps = 27/177 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS--------------LDSILIDTRKPVL 112 +IL GP GSGKS L N+ +K+ + + + ++ L R + Sbjct: 38 LILCGPPGSGKSSLINVIKNKTHNLFITLFHLNNFNTEIRRIYDQSIINYKLSKRRMILC 97 Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 ++DI+ L+ + H++ + + LL T P + L SR + +S Sbjct: 98 IKDINRLNKPQQE--HLL-LVLKKGYFYLLATCLYNP--MNILNASLSSR---CLYLYLS 149 Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228 D L +I ++ I I+ I+ S A ++ +D A+ Sbjct: 150 PYDKIELALIIKRIINKLNIEIEDNALNVIISH---SSGDARVAINIID-FAIQHMR 202 >gi|82595672|ref|XP_725945.1| helicase [Plasmodium yoelii yoelii str. 17XNL] gi|23481145|gb|EAA17510.1| putative helicase RUVBL [Plasmodium yoelii yoelii] Length = 595 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 36/177 (20%), Positives = 67/177 (37%), Gaps = 27/177 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS--------------LDSILIDTRKPVL 112 +IL GP GSGKS L N+ +K+ + + + ++ L R + Sbjct: 195 LILCGPPGSGKSSLINVIKNKTHNLFITLFHLNNFNTEIRRIYDQSIINYKLSKRRMILC 254 Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDS-SLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 ++DI+ L+ + H++ + + LL T P + L SR + +S Sbjct: 255 IKDINRLNKPQQE--HLL-LVLKKGYFYLLATCLYNP--MNILNASLSSR---CLYLYLS 306 Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228 D L +I ++ I I+ I+ S A ++ +D A+ Sbjct: 307 PYDKIELALIIKRIINKLNIEIEDNALNVIISH---SSGDARVAINIID-FAIQHMR 359 >gi|81428450|ref|YP_395450.1| recombination factor protein RarA [Lactobacillus sakei subsp. sakei 23K] gi|78610092|emb|CAI55141.1| Putative DNA-replication helicase [Lactobacillus sakei subsp. sakei 23K] Length = 426 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 62/169 (36%), Gaps = 27/169 (15%) Query: 67 VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKP-------VLLEDID 117 +IL GP G+GK+ +A+ + + + S + I + +LL++I Sbjct: 42 MILYGPPGTGKTSIASAIAGSTQYAFRMLNAATDSKKDLQIVAEEAKMSGTVILLLDEIH 101 Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 LD D L H+ + +L+ A T + P + SR + ++ ++ Sbjct: 102 RLDKTKQDFLLPHL-----ESGRIVLIGATTENPYITIN-PAIRSR---TQIFEVHPLNE 152 Query: 176 DFLEKVIVKMFADRQIFIDKKLAA-------YIVQRMERSLVFAEKLVD 217 + I + D Q + + Y+ Q L A ++ Sbjct: 153 ADIHVAIQRALTDPQKGLGDEPVNLDETAEKYLAQVTNGDLRSALNALE 201 >gi|307249662|ref|ZP_07531648.1| Replication-associated recombination protein A [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858360|gb|EFM90430.1| Replication-associated recombination protein A [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 446 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 40/203 (19%), Positives = 72/203 (35%), Gaps = 35/203 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I GP G+GK+ LA I + + R S + + I + ++ T Sbjct: 52 MIFWGPPGTGKTTLAEIIAHHFDAEVERLSAVTSGVKEIREAIERA----KLNRQTGRRT 107 Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N Q D +++ T L SR A + + Sbjct: 108 LLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNA---LLSR---AKIYIL 161 Query: 171 SLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + +V+ D R + +I+ + + + FA ++ M ++A Sbjct: 162 KPLQAVEIAQVLTNALYDKERGLGNESYYIEDNVIELLADYVNGDARFALNCLELMSDMA 221 Query: 224 LS--RGMGITRSLAAEVLKETQQ 244 +G + ++L AEVL E Q Sbjct: 222 EISPQGKHLNKALLAEVLGERQA 244 >gi|302038840|ref|YP_003799162.1| replication-associated recombination protein A [Candidatus Nitrospira defluvii] gi|300606904|emb|CBK43237.1| Replication-associated recombination protein A [Candidatus Nitrospira defluvii] Length = 429 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 36/189 (19%), Positives = 64/189 (33%), Gaps = 30/189 (15%) Query: 19 DQPKNKEEQLFFSFPRCLGISRDDLL-----VHSAIEQAVRLIDSWPSWPSRVVILVGPS 73 Q + ++ + S DDL+ V I+ VI GP Sbjct: 14 AQTATRPGKVPLAERMRPR-SFDDLVGQDEVVGPG-RPLRNAIERDQ---LSSVIFWGPP 68 Query: 74 GSGKSCLANIWSDKSRSTRFSNIAKS-----LDSILIDTRKPVLLEDIDLLDFNDTQLFH 128 G GK+ LA + + + S A + L I+ + L ++ H Sbjct: 69 GCGKTTLAGLVAQHTESQFVPFSAVTGGIPELREIIKAAEHRRAMGRATTLFVDEI---H 125 Query: 129 IINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 N + + +L+ A T S+ + P L SR + VV + ++ L Sbjct: 126 RFNKAQQDAFLPHVERGTVVLIGATTENPSFELIAP-LLSR---SIVVLLKPLSEESLGS 181 Query: 181 VIVKMFADR 189 ++ + DR Sbjct: 182 ILDRAVDDR 190 >gi|291087419|ref|ZP_06571936.1| replication-associated recombination protein A [Clostridium sp. M62/1] gi|291075102|gb|EFE12466.1| replication-associated recombination protein A [Clostridium sp. M62/1] Length = 484 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 28/171 (16%), Positives = 63/171 (36%), Gaps = 26/171 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS-----LDSILIDTRKP--------VLL 113 +I GP G GK+ LA I ++++ + + A + + ++ + V + Sbjct: 75 MIFWGPPGVGKTTLAGIIANRTNAGFINFSAVTSGIKEIREVMAKAEEARHRGMKTVVFV 134 Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 ++I + F + S +L+ A T S+ + L SR V + Sbjct: 135 DEIHRFNKAQQDAFLPY---VERGSIILIGATTENPSFEINSA-LLSR---CRVFVLKEL 187 Query: 174 DDDFLEKVIVKMF-ADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDK 218 + L ++ + R + I+++L I + A +++ Sbjct: 188 SREELTALLKHALTSSRGYGYLKVEIEEELLDMIARFAGGDARTALNVLEM 238 >gi|298694907|gb|ADI98129.1| probable ATPase [Staphylococcus aureus subsp. aureus ED133] gi|323440819|gb|EGA98528.1| recombination factor protein RarA [Staphylococcus aureus O11] gi|323442832|gb|EGB00457.1| recombination factor protein RarA [Staphylococcus aureus O46] Length = 415 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 73/201 (36%), Gaps = 40/201 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117 +I GP G GK+ +A S ++ + ++ ++ + + +LL++I Sbjct: 34 MIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIH 93 Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 L D L H+ N +L+ T + P + SR A + ++ Sbjct: 94 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 142 Query: 174 DDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 +D+ + + + + D Q ID+ Y + S ++ ++ LS Sbjct: 143 NDEDVRQALTRAIEDEENGLKTYQPKIDEDAMTYFSTQ---SQGDVRSALNALELAVLSA 199 Query: 227 G------MGITRSLAAEVLKE 241 +T A + L++ Sbjct: 200 DNDKDGYRHVTLQDAKDCLQK 220 >gi|258448784|ref|ZP_05696896.1| recombination protein MgsA [Staphylococcus aureus A6224] gi|257858062|gb|EEV80951.1| recombination protein MgsA [Staphylococcus aureus A6224] Length = 424 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 73/201 (36%), Gaps = 40/201 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117 +I GP G GK+ +A S ++ + ++ ++ + + +LL++I Sbjct: 43 MIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIH 102 Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 L D L H+ N +L+ T + P + SR A + ++ Sbjct: 103 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 151 Query: 174 DDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 +D+ + + + + D Q ID+ Y + S ++ ++ LS Sbjct: 152 NDEDVRQALTRAIEDDENGLKTYQSKIDEDAMTYFSTQ---SQGDVRNALNALELAVLSA 208 Query: 227 G------MGITRSLAAEVLKE 241 +T A + L++ Sbjct: 209 DNDKDGYRHVTLQDAKDCLQK 229 >gi|223937388|ref|ZP_03629293.1| AAA ATPase central domain protein [bacterium Ellin514] gi|223893939|gb|EEF60395.1| AAA ATPase central domain protein [bacterium Ellin514] Length = 457 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 71/181 (39%), Gaps = 33/181 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIA-KSLDSILIDTRKPVLLEDIDLLDFND 123 +I GP G+GK+ LA I + ++ S R S + D + + LE+ Sbjct: 68 LIFYGPPGTGKTSLAQIIALQTSSKFERLSGVESNVADMRRVLSAASNRLEN----TGQP 123 Query: 124 TQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 T LF H N + L+ A T + V P L SR + + ++ Sbjct: 124 TILFVDEIHRFNKSQQDVLLPDVESGVIRLIGATTHNPFFFVNSP-LVSR---SQIFELR 179 Query: 172 LPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 ++ L +++ + D R + +D+ ++ + S A K ++ ++ AL Sbjct: 180 PLTEEELYQLLQRSLQDPERGLGYMKIHVDEAALRHLAK---LSDGDARKALNSLEIAAL 236 Query: 225 S 225 + Sbjct: 237 T 237 >gi|227830675|ref|YP_002832455.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus L.S.2.15] gi|229579582|ref|YP_002837981.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus Y.G.57.14] gi|284998202|ref|YP_003419969.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus L.D.8.5] gi|227457123|gb|ACP35810.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus L.S.2.15] gi|228010297|gb|ACP46059.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus Y.G.57.14] gi|284446097|gb|ADB87599.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus L.D.8.5] Length = 759 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 25/163 (15%), Positives = 58/163 (35%), Gaps = 33/163 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTR-- 108 P + V+L GP G GK+ LA +++ + + + L I + Sbjct: 224 PPKGVLLYGPPGVGKTLLARALANEIGAYFTSINGPEIMSKFYGESEQRLREIFEEAEKN 283 Query: 109 --KPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ I +++ A P + Sbjct: 284 APAIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGIKGRGKVIVIGATNRPDA---V 340 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L + ++I PD ++++ R + + + + Sbjct: 341 DPALRRPGRFDREIEIRPPDAKARKEILQVHT--RNMPLAEDV 381 Score = 38.2 bits (88), Expect = 0.99, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 19/32 (59%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + ++L GP G+GK+ LA + +S + + Sbjct: 499 PPKGILLFGPPGTGKTMLAKAVATESGANFIA 530 >gi|87126144|gb|ABD20658.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus USA300_FPR3757] Length = 391 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 73/201 (36%), Gaps = 40/201 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117 +I GP G GK+ +A S ++ + ++ ++ + + +LL++I Sbjct: 10 MIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIH 69 Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 L D L H+ N +L+ T + P + SR A + ++ Sbjct: 70 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 118 Query: 174 DDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 +D+ + + + + D Q ID+ Y + S ++ ++ LS Sbjct: 119 NDEDVRQALTRAIEDDENGLKTYQPKIDEDAMTYFSTQ---SQGDVRSALNALELAVLSA 175 Query: 227 G------MGITRSLAAEVLKE 241 +T A + L++ Sbjct: 176 DNDKDGYRHVTLQDAKDCLQK 196 >gi|319400954|gb|EFV89173.1| ATPase family associated with various cellular activities (AAA) family protein [Staphylococcus epidermidis FRI909] Length = 423 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 72/201 (35%), Gaps = 40/201 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117 +I GP G GK+ +A S ++ + ++ ++ + + +LL++I Sbjct: 43 MIFYGPPGIGKTSIAKAISGSTQFKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIH 102 Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 L D L H+ N +L+ T + P + SR A + ++ Sbjct: 103 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 151 Query: 174 DDDFLEKVIVKMFAD--RQIF-----IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 + D + + + D R + +D+ Y + S ++ ++ LS Sbjct: 152 NQDDIRLALDRAINDKERGLSTYHPIVDEDAIEYFSTQ---SQGDVRSALNALELAVLSA 208 Query: 227 G------MGITRSLAAEVLKE 241 IT A + L++ Sbjct: 209 HIDEQNERHITLDDAKDCLQK 229 >gi|150866631|ref|XP_001386295.2| AAA+-type ATPase [Scheffersomyces stipitis CBS 6054] gi|149387887|gb|ABN68266.2| AAA+-type ATPase [Scheffersomyces stipitis CBS 6054] Length = 788 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 61/159 (38%), Gaps = 42/159 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRKP 110 P R ++L GP G+GK+ L + ++ + + ++ I I+ RK Sbjct: 286 PPRGILLHGPPGTGKTMLLRCVASETNAHILTINGPSIVSKYLGETENAIRDIFIEARKY 345 Query: 111 ----VLLEDIDLL----DFND---------TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 + +++ID L + +D L +++ + +++ A P S Sbjct: 346 QPSIIFMDEIDSLVPSRNSDDSGETESRVVATLLTMMDGMGDSGRIVVVAATNRPNSIDA 405 Query: 154 CLP-----DLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 L D V+I +PD D +++K FA Sbjct: 406 ALRRPGRFD--------QEVEIGIPDVDARTDILLKQFA 436 >gi|126465619|ref|YP_001040728.1| AAA family ATPase, CDC48 subfamily protein [Staphylothermus marinus F1] gi|126014442|gb|ABN69820.1| AAA family ATPase, CDC48 subfamily [Staphylothermus marinus F1] Length = 738 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 35/216 (16%), Positives = 75/216 (34%), Gaps = 42/216 (19%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106 P R ++L GP G+GK+ LA + +S + + I + + Sbjct: 496 PPRGILLYGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARLY 555 Query: 107 TRKPVLLEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 + ++ID + +QL ++ I++ D+ +++ A P Sbjct: 556 APAVIFFDEIDAIAPARGYAFDSRVTERIVSQLLTEMDGINRLDNVVVIAATNRPDILDP 615 Query: 154 CLPDLCSRLKAAT---VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER--S 208 L L+ ++ + PD ++ + R + + + Y + R+ S Sbjct: 616 AL------LRPGRFDKLIYVPPPD--LNGRIEILKIHTRNMPLADDVDLYEIARLTEGYS 667 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 E LV + AL + I + L+ + Sbjct: 668 GADLEALVREAAMRALKENIEINKVYMRHFLEAMNE 703 Score = 44.4 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 30/218 (13%), Positives = 76/218 (34%), Gaps = 45/218 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTR-- 108 P + ++L GP G+GK+ LA ++++ + + + L I + Sbjct: 223 PPKGILLYGPPGTGKTLLAKAVANEAEAYFIAINGPEIISKFYGESEQRLREIFEQAKKN 282 Query: 109 --KPVLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + ++ QL +++ + +++ A P + Sbjct: 283 APAIIFIDEIDAIAPKRDEVMGEVERRVVAQLLALMDGLESRGDVIVIAATNRPNALD-- 340 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 P L + +++ LPD +++ R + + + + + A Sbjct: 341 -PALRRPGRFDREIEVPLPDKQGRLEILQ--IHTRGMPLANDVDLNKLAEITHGYTGA-D 396 Query: 215 LVDKMDNLALSRGMGI---------TRSLAAEVLKETQ 243 + + AL T + EVL++ + Sbjct: 397 IAALVKEAALHALRRYMPEIDLESETIPV--EVLEKME 432 >gi|73920780|sp|Q07590|SAV_SULAC RecName: Full=Protein SAV Length = 780 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 58/163 (35%), Gaps = 33/163 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109 P + ++L GP G+GK+ LA +++ + + + + I + + Sbjct: 245 PPKGILLYGPPGTGKTLLARALANEIGAYFITVNGPEIMSKFYGESEQRIREIFKEAEEN 304 Query: 110 ---PVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ I +++ A P + Sbjct: 305 APSIIFIDEIDAIAPKREDVTGEVEKRVVAQLLTLMDGIKGRGRVIVIGATNRPDAID-- 362 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L + ++I PD + ++ R + I + Sbjct: 363 -PALRRPGRFDREIEIRPPDTKGRKDILQVH--TRNMPITDDV 402 Score = 37.8 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 19/32 (59%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + ++L GP G+GK+ LA + +S + + Sbjct: 520 PPKGILLFGPPGTGKTMLAKAVATESGANFIA 551 >gi|304321467|ref|YP_003855110.1| hypothetical protein PB2503_09579 [Parvularcula bermudensis HTCC2503] gi|303300369|gb|ADM09968.1| hypothetical protein PB2503_09579 [Parvularcula bermudensis HTCC2503] Length = 402 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 50/144 (34%), Gaps = 22/144 (15%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID--LLDFN 122 +IL GP G GK+ LA + + S A + + E + Sbjct: 18 PSLILWGPPGVGKTTLARLLAGAVDLEFVSISAIFSGVADLRK----VFEAAEGRRQTGQ 73 Query: 123 DTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 T LF H N + + L+ A T S+ + L SR A VV + Sbjct: 74 GTLLFVDEIHRFNRAQQDSFLPVMEKGTITLVGATTENPSFALNAA-LLSR---AQVVTL 129 Query: 171 SLPDDDFLEKVIVKMFADRQIFID 194 D+ LE+++ + D + Sbjct: 130 HRLDEAALEQLLQRAEKDIGAPLP 153 >gi|198283628|ref|YP_002219949.1| IstB domain-containing protein ATP-binding protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|198284129|ref|YP_002220450.1| IstB domain-containing protein ATP-binding protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|198284483|ref|YP_002220804.1| IstB domain-containing protein ATP-binding protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|198284852|ref|YP_002221173.1| IstB domain-containing protein ATP-binding protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667625|ref|YP_002427536.1| ISAfe9, transposition helper protein [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248149|gb|ACH83742.1| IstB domain protein ATP-binding protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|198248650|gb|ACH84243.1| IstB domain protein ATP-binding protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|198249004|gb|ACH84597.1| IstB domain protein ATP-binding protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|198249373|gb|ACH84966.1| IstB domain protein ATP-binding protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519838|gb|ACK80424.1| ISAfe9, transposition helper protein [Acidithiobacillus ferrooxidans ATCC 23270] Length = 275 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 29/152 (19%), Positives = 51/152 (33%), Gaps = 29/152 (19%) Query: 31 SFPRCLGISRDDLLVHSAIE----QAVRLIDSW-PSWPSRVVILVGPSGSGKSCL----A 81 + P + D V + QA+ D W + ++L GP G GKS L Sbjct: 67 NLPPDKRLGNYDFTVVPTLSKAHVQALAEADGWIQEGAN--LLLFGPPGVGKSHLVAAVG 124 Query: 82 NIWSDKSRSTRFSNIA--------------KSLDSILIDTRKPVLLEDIDLLDFNDTQ-- 125 + ++ F+ + +D ++L+D + + + Sbjct: 125 HALVERGCRVYFTRTSDLVQQLQSARKELRLPATLAKLDRFDLLILDDFSYVRRDQAETS 184 Query: 126 -LFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156 LF +I S SL +TA +W P Sbjct: 185 VLFELI-SERYERKSLAITANQPFSAWDQVFP 215 >gi|302874956|ref|YP_003843589.1| Holliday junction DNA helicase RuvB [Clostridium cellulovorans 743B] gi|307690426|ref|ZP_07632872.1| Holliday junction DNA helicase RuvB [Clostridium cellulovorans 743B] gi|302577813|gb|ADL51825.1| Holliday junction DNA helicase RuvB [Clostridium cellulovorans 743B] Length = 342 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 38/194 (19%), Positives = 71/194 (36%), Gaps = 29/194 (14%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P V+L GP G GK+ LA I +++ T +++ L+D D+L + Sbjct: 52 PLDHVLLYGPPGLGKTTLATIIANEMGGTLKITSGPAIERAGDLAAILTGLKDNDVLFID 111 Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK-- 180 + H +N + +L P L + + +A ++I LP + Sbjct: 112 EI---HRMNRAVEE---ILY-----PAMEDYALDIVIGKGASAKSIRIDLPKFTLIGATT 160 Query: 181 ---VIVKMFADRQIFIDKKLAAY-----IVQRMERSLVFAEKLVDKMDNLA---LSRGMG 229 ++ DR + Y + + + RS L +D A L++ Sbjct: 161 RIGLLTAPLRDRFGVMCP--MEYYDESDLKEIISRS-SSILDL--PIDEEAAMELAKRSR 215 Query: 230 ITRSLAAEVLKETQ 243 T +A +LK + Sbjct: 216 GTPRIANRLLKRVR 229 >gi|52841991|ref|YP_095790.1| recombination factor protein RarA [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|148359308|ref|YP_001250515.1| chromosome architecture ATPase [Legionella pneumophila str. Corby] gi|296107355|ref|YP_003619055.1| ATPase associated with chromosome architecture [Legionella pneumophila 2300/99 Alcoy] gi|52629102|gb|AAU27843.1| ATPase associated with chromosome architecture [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|148281081|gb|ABQ55169.1| ATPase associated with chromosome architecture [Legionella pneumophila str. Corby] gi|295649256|gb|ADG25103.1| ATPase associated with chromosome architecture [Legionella pneumophila 2300/99 Alcoy] gi|307610463|emb|CBX00034.1| hypothetical protein LPW_17901 [Legionella pneumophila 130b] Length = 434 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 66/181 (36%), Gaps = 26/181 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIA-----KSLDSILIDTRKPVLLEDIDLLDF 121 +IL GP G GK+ +A + + + A K + + + ++ ++ + +L Sbjct: 49 MILWGPPGVGKTTIARLTAQAFDCEWIALSAVFSGVKDIRAAVEKAQEYLIHDKQTILFI 108 Query: 122 NDTQLFHIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 ++ H N Q +LL + A T S+ V L SR A V + Sbjct: 109 DEI---HRFNKAQQD--ALLPYTESGLITFIGATTENPSFEVNSA-LLSR---AQVYVLK 159 Query: 172 LPDDDFLEKVIVKMFAD--RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229 + L+ + ++ + ++ +++ + L+++ L+ Sbjct: 160 PLSEQELKLLFLRAHQRALSSLQFTEEAVDFLISCADGDARRLLNLLEQTKTACLTIKTA 219 Query: 230 I 230 + Sbjct: 220 V 220 >gi|297620228|ref|YP_003708333.1| AAA ATPase central domain-containing protein [Methanococcus voltae A3] gi|297379205|gb|ADI37360.1| AAA ATPase central domain protein [Methanococcus voltae A3] Length = 510 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 61/170 (35%), Gaps = 23/170 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIA---------------KSLDSILIDTRKPV 111 ++L GP G GK+ LA ++ A ++ L R + Sbjct: 42 LLLAGPPGCGKTTLAYALANDYNFEVIELNASDKRNKNVIQQVVGTAAVSKSLSGRRSLI 101 Query: 112 LLEDIDLLDFNDT--QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 +L+++D L ND + II + +++TA + + L L + +V Sbjct: 102 ILDEVDGLSGNDDRGGVSEIIKVAKTAKNPIILTANDP---YKLNLSTLR---NSVHLVN 155 Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 +S + + V+ K+ +D K I L A ++ + Sbjct: 156 VSSVHTNSIPPVLRKIALQEGYEVDPKAIKMIASHASGDLRAAINDLESL 205 >gi|323466477|gb|ADX70164.1| Helicase subunit of the Holliday junction resolvase related ATPase [Lactobacillus helveticus H10] Length = 424 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 48/126 (38%), Gaps = 15/126 (11%) Query: 67 VILVGPSGSGKSCLANIWSDKSR------STRFSNIAKSLDSILIDTRKPVL--LEDIDL 118 +IL GP G+GKS LA I + + + N K I +P + +++I Sbjct: 48 LILWGPPGTGKSSLAQIIAKQFDYPLAKFNASIDNKGKLDQFIKTYPYQPFVLLIDEIHR 107 Query: 119 LDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178 + N + LL+ A T + P + SR + + +D + Sbjct: 108 MTKNLQDFLLPY---LENGHILLVGATTENPIMSIV-PAIRSR---CQIFEFKALNDQNI 160 Query: 179 EKVIVK 184 E V+ + Sbjct: 161 EIVLKR 166 >gi|294848657|ref|ZP_06789403.1| ATPase [Staphylococcus aureus A9754] gi|294824683|gb|EFG41106.1| ATPase [Staphylococcus aureus A9754] Length = 427 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 73/201 (36%), Gaps = 40/201 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117 +I GP G GK+ +A S ++ + ++ ++ + + +LL++I Sbjct: 46 MIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIH 105 Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 L D L H+ N +L+ T + P + SR A + ++ Sbjct: 106 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 154 Query: 174 DDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 +D+ + + + + D Q ID+ Y + S ++ ++ LS Sbjct: 155 NDEDVRQALTRAIEDDENGLKTYQPKIDEDAMTYFSTQ---SQGDVRSALNALELAVLSA 211 Query: 227 G------MGITRSLAAEVLKE 241 +T A + L++ Sbjct: 212 DNDKDGYRHVTLQDAKDCLQK 232 >gi|228939746|ref|ZP_04102327.1| Prophage LambdaBa02, DNA replication protein DnaC [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228972609|ref|ZP_04133213.1| Prophage LambdaBa02, DNA replication protein DnaC [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982250|ref|ZP_04142532.1| Prophage LambdaBa02, DNA replication protein DnaC [Bacillus thuringiensis Bt407] gi|228777479|gb|EEM25764.1| Prophage LambdaBa02, DNA replication protein DnaC [Bacillus thuringiensis Bt407] gi|228787150|gb|EEM35125.1| Prophage LambdaBa02, DNA replication protein DnaC [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228819978|gb|EEM66022.1| Prophage LambdaBa02, DNA replication protein DnaC [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 164 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 48/121 (39%), Gaps = 24/121 (19%) Query: 56 IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL----------- 104 + ++ W ++L G G+GK+ LA ++ + + +S+ +L Sbjct: 4 VKTFKEWDGESLMLWGDPGNGKTHLAAAIVNELSKKGYIVVFQSVPELLQRIRRTFNSEN 63 Query: 105 ----------IDTRKPVLLEDIDL---LDFNDTQLFHIINSIHQYDSSLLMTARTFPVSW 151 + ++L+DI ++ + +LF+II+ ++ + L T+ P Sbjct: 64 KENETQIMRALLECDLLILDDIGAEKTTEWVEEKLFNIIDGRYRKELPTLYTSNLEPKEL 123 Query: 152 G 152 Sbjct: 124 K 124 >gi|87202996|gb|ABD30806.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|320140486|gb|EFW32340.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus MRSA131] gi|320144025|gb|EFW35794.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus MRSA177] Length = 415 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 73/201 (36%), Gaps = 40/201 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117 +I GP G GK+ +A S ++ + ++ ++ + + +LL++I Sbjct: 34 MIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIH 93 Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 L D L H+ N +L+ T + P + SR A + ++ Sbjct: 94 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 142 Query: 174 DDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 +D+ + + + + D Q ID+ Y + S ++ ++ LS Sbjct: 143 NDEDVRQALTRAIEDDENGLKTYQPKIDEDAMTYFSTQ---SQGDVRSALNALELAVLSA 199 Query: 227 G------MGITRSLAAEVLKE 241 +T A + L++ Sbjct: 200 DNDKDGYRHVTLQDAKDCLQK 220 >gi|15924617|ref|NP_372151.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus Mu50] gi|15927207|ref|NP_374740.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus N315] gi|156979945|ref|YP_001442204.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus Mu3] gi|255006413|ref|ZP_05145014.2| recombination factor protein RarA [Staphylococcus aureus subsp. aureus Mu50-omega] gi|258438200|ref|ZP_05689484.1| recombination factor protein RarA [Staphylococcus aureus A9299] gi|258443663|ref|ZP_05692002.1| recombination factor protein RarA [Staphylococcus aureus A8115] gi|269203253|ref|YP_003282522.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus ED98] gi|282893130|ref|ZP_06301364.1| ATPase [Staphylococcus aureus A8117] gi|296275913|ref|ZP_06858420.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus MR1] gi|13701425|dbj|BAB42719.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] gi|14247398|dbj|BAB57789.1| similar to ATPase, AAA family [Staphylococcus aureus subsp. aureus Mu50] gi|156722080|dbj|BAF78497.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|257848244|gb|EEV72235.1| recombination factor protein RarA [Staphylococcus aureus A9299] gi|257851069|gb|EEV75012.1| recombination factor protein RarA [Staphylococcus aureus A8115] gi|262075543|gb|ACY11516.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus ED98] gi|282764448|gb|EFC04574.1| ATPase [Staphylococcus aureus A8117] Length = 424 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 73/201 (36%), Gaps = 40/201 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117 +I GP G GK+ +A S ++ + ++ ++ + + +LL++I Sbjct: 43 MIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIH 102 Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 L D L H+ N +L+ T + P + SR A + ++ Sbjct: 103 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 151 Query: 174 DDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 +D+ + + + + D Q ID+ Y + S ++ ++ LS Sbjct: 152 NDEDVRQALTRAIEDDENGLKTYQPKIDEDAMTYFSTQ---SQGDVRSALNALELAVLSA 208 Query: 227 G------MGITRSLAAEVLKE 241 +T A + L++ Sbjct: 209 DNDKDGYRHVTLQDAKDCLQK 229 >gi|134295004|ref|YP_001118739.1| recombination factor protein RarA [Burkholderia vietnamiensis G4] gi|134138161|gb|ABO53904.1| Recombination protein MgsA [Burkholderia vietnamiensis G4] Length = 436 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 59/170 (34%), Gaps = 22/170 (12%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA + + + A I + ++ + T L Sbjct: 50 MILWGPPGVGKTTLARLTALAFDCEFIALSAVLGGVKDIREAMEQAKDTLNRTGRH-TIL 108 Query: 127 F----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N + + A T S+ V L SR A V + D Sbjct: 109 FVDEIHRFNKGQQDALLPFVESGLVTFIGATTENPSFEVNSA-LLSR---AQVYVLKSLD 164 Query: 175 DDFLEKVIVK--MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 DD + +++ + A + D K ++ + A + ++ ++ Sbjct: 165 DDEMRQLLERAQQIALDGLAFDDKAVDTLIGYAD---GDARRFLNLLEQA 211 >gi|148695575|gb|EDL27522.1| proteasome (prosome, macropain) 26S subunit, ATPase 3, isoform CRA_c [Mus musculus] Length = 451 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 25/183 (13%), Positives = 68/183 (37%), Gaps = 38/183 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 222 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 281 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + + ++N + Q ++ + ++ A Sbjct: 282 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 341 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ +P+++ +++ R++ + + + R Sbjct: 342 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 395 Query: 211 FAE 213 A+ Sbjct: 396 GAQ 398 >gi|327540333|gb|EGF26919.1| replication-associated recombination protein A [Rhodopirellula baltica WH47] Length = 439 Score = 45.9 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 58/172 (33%), Gaps = 24/172 (13%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 ++L GP G+GK+ LA++ + + S + A S + + + D Sbjct: 53 GSILLHGPPGTGKTTLAHLIASEQNSELITLNAISSGVKDVREVLAKARDRVSAGD-PRP 111 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + L+ A T + V L SR + + + Sbjct: 112 LLFIDEIHRFNKSQQDALLADVESGIISLIGATTSNPYFAVNAA-LISR---SQLFGLEP 167 Query: 173 PDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVD 217 + + ++ + DR + ID+ Y+ + A ++ Sbjct: 168 VSVEDMRSLLKRAITDRECGLGNQNVTIDEDAIDYLSSASDGDARKALTALE 219 >gi|190347891|gb|EDK40247.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC 6260] Length = 426 Score = 45.9 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 63/178 (35%), Gaps = 40/178 (22%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + ++ GP G+GK+ LA + +S +T A L + I ++ Sbjct: 205 PPKGALMYGPPGTGKTLLARACAAQSGATFLKLAAPQLVQMFIGDGAKLVRDAFALAKEK 264 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151 ++++D + + ++N + D ++ A + Sbjct: 265 APTIIFIDELDAIGTKRFDSDKSGDREVQRTMLELLNQLDGFGSDDRVKVLAATNRVDTL 324 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 L L S RL ++ LP ++ E V+ R++ D + + + RS Sbjct: 325 DPAL--LRSGRLD--RKIEFPLPSEEARESVLKIHA--RKLNCDNDSVNW--RELARS 374 >gi|119719184|ref|YP_919679.1| replication factor C large subunit [Thermofilum pendens Hrk 5] gi|150415669|sp|A1RWU6|RFCL_THEPD RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|119524304|gb|ABL77676.1| replication factor C large subunit [Thermofilum pendens Hrk 5] Length = 413 Score = 45.9 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 43/212 (20%), Positives = 85/212 (40%), Gaps = 36/212 (16%) Query: 48 AIEQA----VRLIDSWPSW-PSRVV-ILVGPSGSGKSCLANIWSD--------------K 87 E+A V I+SW PS+ +L GP GSGK+ + + + + Sbjct: 25 GNEEAKKKYVAWINSWVKGKPSKKAALLYGPPGSGKTSIVHATAKEFSWELIELNASDVR 84 Query: 88 SRSTRFSNIAKSLD--SILIDTRKPVLLEDIDLLDFNDTQ--LFHIINSIHQYDSSLLMT 143 +R + +L+ S+L + K +LL+++D + + L I+ I + + +++T Sbjct: 85 TREALQQRLLGALNTRSVLGYSGKIILLDEVDGISTKEDAGGLQAIVELIEKSNWPIVLT 144 Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203 A W L L +++ + KV+ + + + +++ + I Sbjct: 145 ANDP---WDPKLRPLR---DLCELIEFKKIGKRDIMKVLENICSKEGVECSREVLSAIAD 198 Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLA 235 + L A D +L+ G T SLA Sbjct: 199 NAKGDLRAAIN-----DLQSLAMGKK-TISLA 224 >gi|323575416|dbj|BAJ78236.1| replication initiation protein [Spiroplasma sp. Ozg] Length = 158 Score = 45.9 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 5/90 (5%) Query: 111 VLLEDIDLLD---FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 +L++DI L + FHI NS +++T+ P SR ++ Sbjct: 57 LLVDDIQFLANRSKTNEIFFHIFNSFVNKQKQIVITSDKHPDDLYGFEERNVSRFQSGLS 116 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 V I PD + +I+ + + D + Sbjct: 117 VGIDSPDFE--TSLIILKEKIKSLNYDPSI 144 >gi|295428203|ref|ZP_06820835.1| ATPase [Staphylococcus aureus subsp. aureus EMRSA16] gi|295128561|gb|EFG58195.1| ATPase [Staphylococcus aureus subsp. aureus EMRSA16] Length = 427 Score = 45.9 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 73/201 (36%), Gaps = 40/201 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117 +I GP G GK+ +A S ++ + ++ ++ + + +LL++I Sbjct: 46 MIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIH 105 Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 L D L H+ N +L+ T + P + SR A + ++ Sbjct: 106 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 154 Query: 174 DDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 +D+ + + + + D Q ID+ Y + S ++ ++ LS Sbjct: 155 NDEDVRQALTRAIEDEENGLKTYQPKIDEDAMTYFSTQ---SQGDVRSALNALELAVLSA 211 Query: 227 G------MGITRSLAAEVLKE 241 +T A + L++ Sbjct: 212 DNDKDGYRHVTLQDAKDCLQK 232 >gi|283765965|gb|ADB28381.1| DNA replication protein DnaC [Bacillus phage 250] Length = 267 Score = 45.9 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 51/126 (40%), Gaps = 24/126 (19%) Query: 51 QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------ 104 A++ + ++ W +++ G G+GK+ LA ++ + + +S+ +L Sbjct: 102 IAMKYVKTFKEWNGESLMIWGDPGNGKTHLAAAIVNELSKKGYIVVFQSVPELLQRIRST 161 Query: 105 ---------------IDTRKPVLLEDIDL---LDFNDTQLFHIINSIHQYDSSLLMTART 146 + ++L+DI ++ + +LF+II+ ++ + L T+ Sbjct: 162 FNSENKENETQIMRALLECDLLILDDIGAEKTTEWVEEKLFNIIDGRYRKELPTLYTSNL 221 Query: 147 FPVSWG 152 P Sbjct: 222 QPKELQ 227 >gi|262038640|ref|ZP_06012008.1| replication-associated recombination protein A [Leptotrichia goodfellowii F0264] gi|261747346|gb|EEY34817.1| replication-associated recombination protein A [Leptotrichia goodfellowii F0264] Length = 408 Score = 45.9 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 35/189 (18%), Positives = 68/189 (35%), Gaps = 29/189 (15%) Query: 68 ILVGPSGSGKSCLANIWSDK--SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125 I G G+GK+ LA I +++ + I S+ I + + + I+ T Sbjct: 52 IFWGSPGTGKTTLAEIIANRMNYNYEYLNAIKSSVSDIKELSERAKRIFGIE---GRQTL 108 Query: 126 LF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKIS 171 LF H N + + + +L+ T S L SR + Sbjct: 109 LFFDEIHRFNKLQQDSLLQDLENGNIILIGATTENPYYSLNNA---LLSR---CMAFEFK 162 Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231 + + L K++ + + +++ YI + +E A +++ + N G+ T Sbjct: 163 KLNKEDLFKILKNINDKEKFDFSEEILEYISEIIEGDARQAINVLELLSN----TGVNFT 218 Query: 232 RSLAAEVLK 240 EVL Sbjct: 219 LEEVKEVLN 227 >gi|284173309|ref|ZP_06387278.1| AAA ATPase family protein [Sulfolobus solfataricus 98/2] gi|261602026|gb|ACX91629.1| AAA family ATPase, CDC48 subfamily [Sulfolobus solfataricus 98/2] Length = 759 Score = 45.9 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 25/163 (15%), Positives = 58/163 (35%), Gaps = 33/163 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTR-- 108 P + V+L GP G GK+ LA +++ + + + L I + Sbjct: 224 PPKGVLLYGPPGVGKTLLARALANEIGAYFTSINGPEIMSKFYGESEQRLREIFEEAEKN 283 Query: 109 --KPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ I +++ A P + Sbjct: 284 SPAIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGIKGRGKVIVIGATNRPDA---V 340 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L + ++I PD ++++ R + + + + Sbjct: 341 DPALRRPGRFDREIEIRPPDAKARKEILQVH--TRNMPLAEDV 381 Score = 38.2 bits (88), Expect = 1.0, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 19/32 (59%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + ++L GP G+GK+ LA + +S + + Sbjct: 499 PPKGILLFGPPGTGKTMLAKAVATESGANFIA 530 >gi|229142658|ref|ZP_04271134.1| Prophage LambdaBa02, DNA replication protein DnaC [Bacillus cereus BDRD-ST26] gi|228640795|gb|EEK97150.1| Prophage LambdaBa02, DNA replication protein DnaC [Bacillus cereus BDRD-ST26] Length = 235 Score = 45.9 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 51/126 (40%), Gaps = 24/126 (19%) Query: 51 QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------ 104 A++ + ++ W +++ G G+GK+ LA ++ + + +S+ +L Sbjct: 70 IAMKYVKTFKEWNGESLMIWGDPGNGKTHLAAAIVNELSKKGYIVVFQSVPELLQRIRST 129 Query: 105 ---------------IDTRKPVLLEDIDL---LDFNDTQLFHIINSIHQYDSSLLMTART 146 + ++L+DI ++ + +LF+II+ ++ + L T+ Sbjct: 130 FNSENKENETQIMRALLECDLLILDDIGAEKTTEWVEEKLFNIIDGRYRKELPTLYTSNL 189 Query: 147 FPVSWG 152 P Sbjct: 190 QPKELQ 195 >gi|223983856|ref|ZP_03634020.1| hypothetical protein HOLDEFILI_01301 [Holdemania filiformis DSM 12042] gi|223964180|gb|EEF68528.1| hypothetical protein HOLDEFILI_01301 [Holdemania filiformis DSM 12042] Length = 420 Score = 45.9 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 67/167 (40%), Gaps = 25/167 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSR-----STRFSNIAKSLDSILIDT----RKPVLLEDID 117 +I GP G+GK+ LA++ +++ + K LD+I + ++++++ Sbjct: 42 MIFYGPPGTGKTTLASVLANELHLPYRLFNAVTGNKKELDTIFEEAKFYDGLVLIIDEVH 101 Query: 118 LLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 L+ + L H+ N +L+ A T + + P + SR + I + Sbjct: 102 RLNKDKQDLLLPHVEN-----GRIILIGATTSNPTMAIN-PAIRSR---CHLFAIKPLET 152 Query: 176 DFLEKVIVKMFADR-----QIFIDKKLAAYIVQRMERSLVFAEKLVD 217 + + + A Q+ +D K A I + +A +++ Sbjct: 153 ADIIAALNRAAASEKGLNGQVQLDPKAAELIASYCGGDIRYALNVLE 199 >gi|197261519|ref|YP_002154334.1| DNA replication protein DnaC [Bacillus phage IEBH] gi|197092391|gb|ACH42266.1| DNA replication protein DnaC [Bacillus phage IEBH] Length = 263 Score = 45.9 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 51/126 (40%), Gaps = 24/126 (19%) Query: 51 QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------ 104 A++ + ++ W +++ G G+GK+ LA ++ + + +S+ +L Sbjct: 98 IAMKYVKTFKEWNGESLMIWGDPGNGKTHLAAAIVNELSKKGYIVVFQSVPELLQRIRST 157 Query: 105 ---------------IDTRKPVLLEDIDL---LDFNDTQLFHIINSIHQYDSSLLMTART 146 + ++L+DI ++ + +LF+II+ ++ + L T+ Sbjct: 158 FNSENKENETQIMRALLECDLLILDDIGAEKTTEWVEEKLFNIIDGRYRKELPTLYTSNL 217 Query: 147 FPVSWG 152 P Sbjct: 218 QPKELQ 223 >gi|70606628|ref|YP_255498.1| ATP-dependent Zn protease [Sulfolobus acidocaldarius DSM 639] gi|68567276|gb|AAY80205.1| ATP-dependent Zn protease [Sulfolobus acidocaldarius DSM 639] Length = 747 Score = 45.9 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 58/163 (35%), Gaps = 33/163 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109 P + ++L GP G+GK+ LA +++ + + + + I + + Sbjct: 212 PPKGILLYGPPGTGKTLLARALANEIGAYFITVNGPEIMSKFYGESEQRIREIFKEAEEN 271 Query: 110 ---PVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ I +++ A P + Sbjct: 272 APSIIFIDEIDAIAPKREDVTGEVEKRVVAQLLTLMDGIKGRGRVIVIGATNRPDAID-- 329 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L + ++I PD + ++ R + I + Sbjct: 330 -PALRRPGRFDREIEIRPPDTKGRKDILQVH--TRNMPITDDV 369 Score = 37.8 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 19/32 (59%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + ++L GP G+GK+ LA + +S + + Sbjct: 487 PPKGILLFGPPGTGKTMLAKAVATESGANFIA 518 >gi|158257224|dbj|BAF84585.1| unnamed protein product [Homo sapiens] Length = 423 Score = 45.9 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 73/201 (36%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 203 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 262 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + ++N + Q ++ + ++ A Sbjct: 263 APSIIFIDELDAIGTKRFDSEKAGDREVQRTTLELLNQLDGFQPNTQVKVIAATNRVDIL 322 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ +P+++ +++ R++ + + + R Sbjct: 323 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 376 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ ++ G T Sbjct: 377 GAQCKAVCVEAGMIALRRGAT 397 >gi|15897351|ref|NP_341956.1| AAA ATPase family protein [Sulfolobus solfataricus P2] gi|13813572|gb|AAK40746.1| AAA family ATPase [Sulfolobus solfataricus P2] Length = 769 Score = 45.9 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 25/163 (15%), Positives = 58/163 (35%), Gaps = 33/163 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTR-- 108 P + V+L GP G GK+ LA +++ + + + L I + Sbjct: 234 PPKGVLLYGPPGVGKTLLARALANEIGAYFTSINGPEIMSKFYGESEQRLREIFEEAEKN 293 Query: 109 --KPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ I +++ A P + Sbjct: 294 SPAIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGIKGRGKVIVIGATNRPDA---V 350 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L + ++I PD ++++ R + + + + Sbjct: 351 DPALRRPGRFDREIEIRPPDAKARKEILQVH--TRNMPLAEDV 391 Score = 38.2 bits (88), Expect = 1.0, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 19/32 (59%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + ++L GP G+GK+ LA + +S + + Sbjct: 509 PPKGILLFGPPGTGKTMLAKAVATESGANFIA 540 >gi|328788555|ref|XP_393080.4| PREDICTED: spastin [Apis mellifera] Length = 712 Score = 45.9 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 58/165 (35%), Gaps = 55/165 (33%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P+R ++L GP G+GK+ LA + + +T FS A SL S + + ++ Sbjct: 470 PARGLLLFGPPGNGKTLLARAVATQCNATFFSISAASLTSKYVGEGEKLVRALFSIAREL 529 Query: 113 ------LEDIDLLDFNDTQLFHIINS--------------IHQYDSSLLMTARTFPVSWG 152 ++++D L H + + + L+M A P Sbjct: 530 QPSVIFIDEVDSLLSERRDNEHEASRRLKTEFLVEFDGLPCNPEERVLVMAATNRPQELD 589 Query: 153 ------------VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 V LPDL +R+ L++++ K Sbjct: 590 EAALRRFTKRVYVTLPDLRTRI-------------MLLKRLLAKH 621 >gi|297587579|ref|ZP_06946223.1| M41 family endopeptidase FtsH [Finegoldia magna ATCC 53516] gi|297574268|gb|EFH92988.1| M41 family endopeptidase FtsH [Finegoldia magna ATCC 53516] Length = 628 Score = 45.9 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 38/217 (17%), Positives = 73/217 (33%), Gaps = 53/217 (24%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + +++ FS + + Sbjct: 199 VLLVGPPGTGKTLLAQAVAGEAKVPFFSMSGSEFVEMFVGLGASKVRDLFKQAAEKAPCI 258 Query: 111 VLLEDIDLL------------DFNDTQLFHIINS---IHQYDSSLLMTARTFP------- 148 V +++ID + D + L ++N +++ A P Sbjct: 259 VFIDEIDAIGKRRDTAGISGNDEREQTLNQLLNEMDGFSGNSGVVILAATNRPEILDPAL 318 Query: 149 -------VSWGVCLPDLCSRLK----AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 V LPDL R+ A +KI D + V + + + Sbjct: 319 TRPGRFDRQIPVELPDLQGRIDILKVHARKIKIEK--DLDYKAVALMTAGTSGAQLANIV 376 Query: 198 AAYIVQ--RMERSLVFAEKLVDKMDNLALSRGMGITR 232 ++ RM R++V E L++ ++ + + T Sbjct: 377 NEAALRAVRMGRNIVTQEDLIESVEVVIAGQQRKGTV 413 >gi|254172616|ref|ZP_04879291.1| AAA family ATPase, CDC48 subfamily [Thermococcus sp. AM4] gi|214033545|gb|EEB74372.1| AAA family ATPase, CDC48 subfamily [Thermococcus sp. AM4] Length = 796 Score = 45.9 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 69/187 (36%), Gaps = 47/187 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109 P + V+L GP G+GK+ LA ++++ + + + L + + + Sbjct: 215 PPKGVLLYGPPGTGKTLLAKAVANEANAHFIAINGPEIMSKYYGESEERLREVFKEAEEN 274 Query: 110 ---PVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + +++ A P + Sbjct: 275 APAIIFIDEIDAIAPKREETHGEVEKRVVSQLLTLMDGLKSRGKVIVIGATNRPDAID-- 332 Query: 155 LPDLC--SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 P L R ++ +PD ++++ R + I+ + RS Sbjct: 333 -PALRRPGRFDREL--EVGVPDKQGRKEILQ--IHTRGMPIEPE--------FRRS--KV 377 Query: 213 EKLVDKM 219 ++++K+ Sbjct: 378 LEILEKL 384 Score = 45.5 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 32/215 (14%), Positives = 75/215 (34%), Gaps = 45/215 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106 P + ++L GP G+GK+ LA +++S + + NI + Sbjct: 550 PPKGILLYGPPGTGKTLLAKAVANESEANFIAIKGPEVLSKWVGESEKNIREIFRKARQA 609 Query: 107 TRKPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL ++ I + +++ A P Sbjct: 610 APTVIFIDEIDAIAPRRGTDVNRVTDRLINQLLTEMDGIQENSGVVVIGATNRPDIIDPA 669 Query: 155 LPDLC----SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRME-RS 208 L L RL + + PD+ ++ + R++ + + + + +R E + Sbjct: 670 L--LRPGRFDRL-----ILVPAPDE--KARLEIFKVHTRKVPLAEDVNLEELAKRTEGYT 720 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 E +V + L+ + + +K + Sbjct: 721 GADIEAVVRE--AAMLAMRRALQEGIIKPGMKADE 753 >gi|151553618|gb|AAI48920.1| NVL protein [Bos taurus] Length = 773 Score = 45.9 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 58/167 (34%), Gaps = 42/167 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P R V+L GP G GK+ LA+ + + A + + + Sbjct: 209 PPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAATEIVSGVSGESEQKLRELFEQAVSS 268 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151 + +++ID + QL + N++ L++ A P S Sbjct: 269 APCILFIDEIDAITPKREIASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSL 328 Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDK 195 L +A + + +PD+ E+++ + R++ + + Sbjct: 329 DPALR------RAGRFDREICLGIPDEASRERILQTLC--RKLRLPE 367 >gi|27544736|dbj|BAC55063.1| DnaA [Mycobacterium vaccae] Length = 176 Score = 45.9 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 3/50 (6%) Query: 37 GISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANI 83 + + ++ S+ A I P+ + + G SG GK+ L + Sbjct: 109 RYTFETFVIGSSNRFAHAATLAISEAPARAYNPLFIWGESGLGKTHLLHA 158 >gi|73982394|ref|XP_860675.1| PREDICTED: similar to 26S protease regulatory subunit 6A (TAT-binding protein 1) (TBP-1) (Proteasome subunit P50) isoform 2 [Canis familiaris] Length = 267 Score = 45.9 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 74/201 (36%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 47 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 106 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + + ++N + Q ++ + ++ A Sbjct: 107 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 166 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ +P+++ +++ R++ + + + R Sbjct: 167 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 220 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ ++ G T Sbjct: 221 GAQCKAVCVEAGMIALRRGAT 241 >gi|68536116|ref|YP_250821.1| recombination factor protein RarA [Corynebacterium jeikeium K411] gi|68263715|emb|CAI37203.1| conserved hypothetical protein [Corynebacterium jeikeium K411] Length = 464 Score = 45.9 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 42/208 (20%), Positives = 80/208 (38%), Gaps = 36/208 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST-------------RFSNIAKSLDSILIDTRKPVLL 113 VIL GP G+GK+ +A++ S S + I ++ +++ + + Sbjct: 74 VILYGPPGTGKTTIASLISQVSGRRFEALSALNSGVKEVRAIIEQARKRLVLGEHTVLFI 133 Query: 114 EDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +++ L S + + LL+ A T S+ V P L SR + +V++S Sbjct: 134 DEVHRFSKTQQDALL----SAVENRTVLLVAATTENPSFSVVSP-LLSR---SLLVQLST 185 Query: 173 PDDDFLEKVIVKMF-ADRQ----IFIDKKLAAYIVQ----RMERSLVFAEKLVDKM---- 219 D + V+ + DR + + +V RSL + E + + Sbjct: 186 LSDADIRTVLQRALDDDRGYAGRLRVTPDAMEQLVAMAAGDARRSLTYLEAAAEGLEPDG 245 Query: 220 -DNLALSRGMGITRSLAAEVLKETQQCD 246 D +A + RSL V++ + D Sbjct: 246 EDGVAELVASQVKRSLNKAVVRYDRDGD 273 >gi|301166020|emb|CBW25594.1| putative AAA family ATPase protein [Bacteriovorax marinus SJ] Length = 432 Score = 45.9 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 33/197 (16%), Positives = 68/197 (34%), Gaps = 22/197 (11%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTR--FSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 +IL GP G+GK+ LA+I + S F+ + ++ + + Sbjct: 64 PSLILWGPPGTGKTTLAHILAANSECELYNFNAVLGGVNELKKLITTAL---QTKADFGR 120 Query: 123 DTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 + +F H N + S + A T V L SR ++++ Sbjct: 121 EAIIFVDEIHRFNKAQQDALLPYVEQGSFKFIGATTENPRSSVNKA-LLSR---VQIIEL 176 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 ++ L +I + I I + +I A +++ ++ S+G + Sbjct: 177 KKLSEENLVHIIENVSKKFDIKITTEAIQFIGDYSNGDARNALNILEVIEKSLASKGEEL 236 Query: 231 TRSLAAE-VLKETQQCD 246 VL+ ++ D Sbjct: 237 GLETIRPLVLENAREYD 253 >gi|297810407|ref|XP_002873087.1| hypothetical protein ARALYDRAFT_908201 [Arabidopsis lyrata subsp. lyrata] gi|297318924|gb|EFH49346.1| hypothetical protein ARALYDRAFT_908201 [Arabidopsis lyrata subsp. lyrata] Length = 810 Score = 45.9 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 64/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP GSGK+ +A ++++ + F SN+ K+ + + Sbjct: 240 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN 299 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + ++M A P S Sbjct: 300 APSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSID-- 357 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PD+ +V+ + + + + + Sbjct: 358 -PALR-RFGRFDREIDIGVPDEIGRLEVL--RIHTKNMKLAEDV 397 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 513 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 569 >gi|45643123|ref|NP_002524.2| nuclear valosin-containing protein-like isoform 1 [Homo sapiens] gi|32699415|sp|O15381|NVL_HUMAN RecName: Full=Nuclear valosin-containing protein-like; Short=NVLp; Short=Nuclear VCP-like protein gi|2406565|gb|AAB70457.1| nuclear VCP-like protein NVLp.2 [Homo sapiens] gi|119590120|gb|EAW69714.1| nuclear VCP-like, isoform CRA_a [Homo sapiens] Length = 856 Score = 45.9 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 59/168 (35%), Gaps = 42/168 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P R V+L GP G GK+ LA+ + + A + + + + Sbjct: 297 PPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFEQAVSN 356 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151 + +++ID + QL + N++ L++ A P S Sbjct: 357 APCIIFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSL 416 Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKK 196 L +A + + +PD+ E+++ + R++ + + Sbjct: 417 DPALR------RAGRFDREICLGIPDEASRERILQTLC--RKLRLPQA 456 >gi|299470801|emb|CBN79847.1| flagellar associated protein [Ectocarpus siliculosus] Length = 947 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 64/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R V++ GP G GK+ +A + ++ + F +N+ K+ D + Sbjct: 390 PPRGVLMYGPPGCGKTMIARAVASETGAYCFTINGPEIMSKLSGESETNLRKAFDDAEAN 449 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ I +++ A P V Sbjct: 450 SPAIIFIDEIDSIAPRRDKAGGEVEKRIVSQLLTLMDGIKPTSHVVVIAATNRP---NVI 506 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PD++ +V+ R + +D + Sbjct: 507 EPALR-RFGRFDRELDIGIPDEEGRLEVL--RIKTRTMKLDDDV 547 Score = 37.4 bits (86), Expect = 1.7, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 23/57 (40%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 S+ + GP G GK+ LA +++ + S L S+ + + E D Sbjct: 663 ASKGTLFYGPPGCGKTLLAKAIANECGANFISVKGPELLSMWFGESEANVRELFDKA 719 >gi|256619453|ref|ZP_05476299.1| recombination factor protein RarA [Enterococcus faecalis ATCC 4200] gi|256598980|gb|EEU18156.1| recombination factor protein RarA [Enterococcus faecalis ATCC 4200] Length = 425 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 71/195 (36%), Gaps = 36/195 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117 +IL GP G+GK+ +A+ + + + R N A + + +LL++I Sbjct: 42 MILYGPPGTGKTSIASAIAGSTNYAFRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIH 101 Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 LD D L H+ N ++M T + P + SR + ++ + Sbjct: 102 RLDKTKQDFLLPHLEN------GRIIMIGATTENPYITINPAIRSR---TQIFEVKPLTE 152 Query: 176 DFLEKVIVKMFAD--RQI-FIDKKLAAYIVQRMERSLV-FAEKLVDKMDNLALSRGM--- 228 +++ I + D R + L +Q + R+ ++ ++ L+ Sbjct: 153 TDIQQAIQEALTDSTRGLGDYPVHLEEKALQHLTRATNGDLRSALNGLE---LAVKSTPK 209 Query: 229 ------GITRSLAAE 237 IT + E Sbjct: 210 NEQGEIKITLPIIEE 224 >gi|47076492|dbj|BAD18153.1| transposase B of IS643 [Bacillus halodurans] Length = 255 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 49/112 (43%), Gaps = 22/112 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDTR 108 +IL+GP G GK+ +A ++ F ++ ++ I Sbjct: 105 LILLGPPGIGKTYIAIGLGLEAVYRGFHVYFATMGELVQLLKSEEYLNKSKVQLKRIRNA 164 Query: 109 KPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 V+++D+ + + + FH+IN +++ SS+++T+ P WG + D Sbjct: 165 DLVIIDDLMYMAMDQREANLFFHLINHLYER-SSIILTSNKSPEEWGHLIGD 215 >gi|21283306|ref|NP_646394.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus MW2] gi|49486460|ref|YP_043681.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus MSSA476] gi|258424053|ref|ZP_05686935.1| recombination factor protein RarA [Staphylococcus aureus A9635] gi|297207652|ref|ZP_06924087.1| AAA family ATPase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300911734|ref|ZP_07129177.1| AAA family ATPase [Staphylococcus aureus subsp. aureus TCH70] gi|21204746|dbj|BAB95442.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2] gi|49244903|emb|CAG43364.1| putative ATPase [Staphylococcus aureus subsp. aureus MSSA476] gi|257845674|gb|EEV69706.1| recombination factor protein RarA [Staphylococcus aureus A9635] gi|283470904|emb|CAQ50115.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus ST398] gi|296887669|gb|EFH26567.1| AAA family ATPase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300885980|gb|EFK81182.1| AAA family ATPase [Staphylococcus aureus subsp. aureus TCH70] gi|329733071|gb|EGG69408.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus 21193] Length = 424 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 73/201 (36%), Gaps = 40/201 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117 +I GP G GK+ +A S ++ + ++ ++ + + +LL++I Sbjct: 43 MIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIH 102 Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 L D L H+ N +L+ T + P + SR A + ++ Sbjct: 103 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 151 Query: 174 DDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 +D+ + + + + D Q ID+ Y + S ++ ++ LS Sbjct: 152 NDEDVRQALTRAIEDEENGLKTYQPKIDEDAMTYFSTQ---SQGDVRSALNALELAVLSA 208 Query: 227 G------MGITRSLAAEVLKE 241 +T A + L++ Sbjct: 209 DNDKDGYRHVTLQDAKDCLQK 229 >gi|239617940|ref|YP_002941262.1| ATP-dependent metalloprotease FtsH [Kosmotoga olearia TBF 19.5.1] gi|310943134|sp|C5CES8|FTSH_KOSOT RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|239506771|gb|ACR80258.1| ATP-dependent metalloprotease FtsH [Kosmotoga olearia TBF 19.5.1] Length = 645 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 28/201 (13%), Positives = 64/201 (31%), Gaps = 50/201 (24%) Query: 67 VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110 ++LVGP G+GK+ LA + ++ + + Sbjct: 200 ILLVGPPGTGKTLLARAVAGEANVPFFYISGSDFVELFVGVGAARVRDLFSQAKASAPSI 259 Query: 111 VLLEDIDLLDF----------NDTQLFHIINSIH-------QYDSSLLMTARTFPVSWGV 153 + +++ID + ++ + +N I ++M A P Sbjct: 260 IFIDEIDAVGRHRGAGLGGGHDERE--QTLNQILVEMDGFDAKTGVIVMAATNRPDILDH 317 Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L+ + + PD +++ R +D + +++ R R+ Sbjct: 318 AL------LRPGRFDKKITVDPPDVKGRAEIL--KIHMRGKPVDPDVDVWLLAR--RTPG 367 Query: 211 FAEKLVDKMDNLA--LSRGMG 229 F ++ + N A L+ Sbjct: 368 FVGADLENLVNEAAILAARRK 388 >gi|194386052|dbj|BAG59590.1| unnamed protein product [Homo sapiens] Length = 856 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 60/168 (35%), Gaps = 42/168 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P R V+L GP G GK+ LA+ + + A + + + + Sbjct: 297 PPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFEQAVSN 356 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151 + +++ID + QL + N++ L++ A P S Sbjct: 357 APCIIFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSL 416 Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKK 196 P L +A + + +PD+ E+++ + R++ + + Sbjct: 417 D---PALR---RAGRFDREICLGIPDEASRERILQTLC--RKLRLPQA 456 >gi|157103374|ref|XP_001647950.1| werner helicase interacting protein [Aedes aegypti] gi|108884173|gb|EAT48398.1| werner helicase interacting protein [Aedes aegypti] Length = 560 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 8/79 (10%) Query: 65 RVVILVGPSGSGKSCLANIWSD---KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 +IL GP G GK+ LA+I + K S +F ++ ++ + D ++ V L DL Sbjct: 173 PSMILWGPPGCGKTTLAHIIAAHCKKHGSMKFVKLSATMSGVN-DVKEAVKLAKNDLAFK 231 Query: 122 NDTQLF----HIINSIHQY 136 T +F H N + Q Sbjct: 232 RKTIMFMDEIHRFNKLQQD 250 >gi|194385100|dbj|BAG60956.1| unnamed protein product [Homo sapiens] Length = 589 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 59/168 (35%), Gaps = 42/168 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P R V+L GP G GK+ LA+ + + A + + + + Sbjct: 191 PPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFEQAVSN 250 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151 + +++ID + QL + N++ L++ A P S Sbjct: 251 APCIIFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSL 310 Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKK 196 L +A + + +PD+ E+++ + R++ + + Sbjct: 311 DPALR------RAGRFDREICLGIPDEASRERILQTLC--RKLRLPQA 350 >gi|148828420|ref|YP_001293173.1| recombination factor protein RarA [Haemophilus influenzae PittGG] gi|148719662|gb|ABR00790.1| outer-membrane lipoprotein carrier protein precursor [Haemophilus influenzae PittGG] Length = 446 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 41/204 (20%), Positives = 78/204 (38%), Gaps = 37/204 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS-------------TRFSNIAKSLDSILIDTRKPVLL 113 +I GP G+GK+ LA I + + I ++ + L D + + + Sbjct: 53 MIFWGPPGTGKTTLAEIIAQCINAEVERIFAVTSGIKEIREAIDRAKQNRLADRKTILFV 112 Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++ + + F HI + + + + A T S+ + L SR A V + Sbjct: 113 DEVHRFNKSQQDAFLPHI-----EDGTVIFIGATTENPSFELNNA-LLSR---ARVYVLK 163 Query: 172 LPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERS----LVFAEKLVDKMD 220 +E+++ + D R + +++ L + + + L E +VD D Sbjct: 164 SLTTAEIEQILQQAIEDPKRGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMAD 223 Query: 221 NLALSRGMGITRSLAAEVLKETQQ 244 G I R+L EVL E Q Sbjct: 224 ET--DNGKKIDRTLLKEVLGERQA 245 >gi|118086469|ref|XP_418979.2| PREDICTED: similar to Werner helicase interacting protein 1 isoform 2 [Gallus gallus] Length = 562 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 55/148 (37%), Gaps = 28/148 (18%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA+I ++ S+ + S S + + D+ N+ Sbjct: 158 PSLILWGPPGCGKTTLAHIIANSSKKKGMRFVTLSATSAKTND-----VRDVISQAQNEK 212 Query: 125 QLF-----------HIINSIHQY--------DSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 +LF H N Q + L+ A T S+ V L SR Sbjct: 213 RLFKRKTILFIDEIHRFNKSQQDTFLPHVECGTVTLIGATTENPSFQVNAA-LLSR---C 268 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFI 193 V+ + + +E ++++ + + Sbjct: 269 RVIVLEKLSVEAMEAILLRAVKSLGVQV 296 >gi|242039557|ref|XP_002467173.1| hypothetical protein SORBIDRAFT_01g020910 [Sorghum bicolor] gi|241921027|gb|EER94171.1| hypothetical protein SORBIDRAFT_01g020910 [Sorghum bicolor] Length = 810 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 64/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP GSGK+ +A ++++ + F SN+ K+ + + Sbjct: 244 PPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 303 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + ++M A P S Sbjct: 304 APSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRSHVIVMGATNRPNSID-- 361 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PD+ +V+ + + + + + Sbjct: 362 -PALR-RFGRFDREIDIGVPDEVGRLEVL--RIHTKNMKLAEDV 401 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 517 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 573 >gi|261337911|ref|ZP_05965795.1| ATPase, AAA family [Bifidobacterium gallicum DSM 20093] gi|270277391|gb|EFA23245.1| ATPase, AAA family [Bifidobacterium gallicum DSM 20093] Length = 460 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 47/206 (22%), Positives = 77/206 (37%), Gaps = 38/206 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA I + +S A + + E + + +T L Sbjct: 62 IILFGPPGVGKTTLATIVAQQSGRAFEELSAVTSGVKDVRAVLARAHERL-VSSGQETVL 120 Query: 127 F--HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F + +LL + A T S+ V P L SR + VVK+ D Sbjct: 121 FIDEVHRFSKSQQDALLPSVENRDITFIAATTENPSFSVIKP-LLSR---SVVVKLESLD 176 Query: 175 DDFLEKVIVKMF-ADRQI----FIDKKLAAYIVQRM-----ERSLVFAEKLVDKMDNLAL 224 D LE VI + ++ + I + I+ RM +SL E +D+ + Sbjct: 177 HDELEDVIRRAIVSEHGLNETVSISDQAVEDII-RMAGGDARKSLTILEAAAGALDDESE 235 Query: 225 SRGM----------GITRSLAAEVLK 240 ++ IT + A+V+ Sbjct: 236 AQRGNGTTSQEGIPEITAQIVAQVMD 261 >gi|127512950|ref|YP_001094147.1| recombination factor protein RarA [Shewanella loihica PV-4] gi|126638245|gb|ABO23888.1| AAA ATPase, central domain protein [Shewanella loihica PV-4] Length = 443 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 65/177 (36%), Gaps = 34/177 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLD---F 121 ++ GP G+GK+ LA + + + + R S + + I +E + Sbjct: 52 MMFWGPPGTGKTTLAELVAHYANAHVERISAVTSGVKEIR------AAIEHAKSVAQSRG 105 Query: 122 NDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 T LF H N + + + + A T S+ + L SR A V Sbjct: 106 QRTLLFVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEINNA-LLSR---ARVYL 161 Query: 170 ISLPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 I D+ + K++ + D RQ+ + ++A + + A L++ M Sbjct: 162 IKRLQDEEIIKIVRQALEDGERGLGKRQLKMPNEVAGKLASLCDGDARKALNLIELM 218 >gi|91086235|ref|XP_966692.1| PREDICTED: similar to transitional endoplasmic reticulum ATPase TER94 isoform 1 [Tribolium castaneum] gi|270011017|gb|EFA07465.1| transitional endoplasmic reticulum ATPase TER94 [Tribolium castaneum] Length = 803 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 37/205 (18%), Positives = 79/205 (38%), Gaps = 60/205 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 235 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKN 294 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148 + + ++++D + QL +++ + + ++M A P Sbjct: 295 SPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNSIDPA 354 Query: 149 --------VSWGVCLPDLCSRLKAATVVKIS-----LPDDDFLEKVIVKMFADRQIFIDK 195 + +PD RL+ V++I L DD LE++ A+ + Sbjct: 355 LRRFGRFDREIDIGIPDATGRLE---VLRIHTKNMKLADDVDLEQI----AAETHGHVGA 407 Query: 196 KLAAYIVQRMERSLVFAEKLVDKMD 220 LA+ S +++ +KMD Sbjct: 408 DLASLC------SEAALQQIREKMD 426 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 508 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKA 564 >gi|324015459|gb|EGB84678.1| transposase domain protein [Escherichia coli MS 60-1] Length = 168 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 45/127 (35%), Gaps = 24/127 (18%) Query: 49 IEQAVRLIDSWPSW--PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID 106 R + W V+L G SG GKS LA D + S +L + Sbjct: 1 NGAQFRQLCETTDWVDAGENVLLFGASGLGKSHLAAAIVDGVVGQGYRARFYSAGELLQE 60 Query: 107 TRKP------------------VLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTAR 145 RK ++++D+ + + + LF +I ++ SL++T+ Sbjct: 61 LRKARAQLKLNELLLKLDRYRVIVVDDLGYVKRDSAETGVLFELIAHRYERG-SLVITSN 119 Query: 146 TFPVSWG 152 WG Sbjct: 120 HPFSMWG 126 >gi|295113243|emb|CBL31880.1| Recombination protein MgsA [Enterococcus sp. 7L76] gi|315161375|gb|EFU05392.1| recombination factor protein RarA [Enterococcus faecalis TX0645] gi|323481114|gb|ADX80553.1| recombination factor protein RarA [Enterococcus faecalis 62] Length = 425 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 71/195 (36%), Gaps = 36/195 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117 +IL GP G+GK+ +A+ + + + R N A + + +LL++I Sbjct: 42 MILYGPPGTGKTSIASAIAGSTNYAFRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIH 101 Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 LD D L H+ N ++M T + P + SR + ++ + Sbjct: 102 RLDKTKQDFLLPHLEN------GRIIMIGATTENPYITINPAIRSR---TQIFEVKPLTE 152 Query: 176 DFLEKVIVKMFAD--RQI-FIDKKLAAYIVQRMERSLV-FAEKLVDKMDNLALSRGM--- 228 +++ I + D R + L +Q + R+ ++ ++ L+ Sbjct: 153 TDIQQAIQEALTDSTRGLGDYPVHLEEKALQHLTRATNGDLRSALNGLE---LAVKSTPK 209 Query: 229 ------GITRSLAAE 237 IT + E Sbjct: 210 NEQGEIKITLPIIEE 224 >gi|257079358|ref|ZP_05573719.1| AAA ATPase [Enterococcus faecalis JH1] gi|256987388|gb|EEU74690.1| AAA ATPase [Enterococcus faecalis JH1] Length = 425 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 71/195 (36%), Gaps = 36/195 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117 +IL GP G+GK+ +A+ + + + R N A + + +LL++I Sbjct: 42 MILYGPPGTGKTSIASAIAGSTNYAFRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIH 101 Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 LD D L H+ N ++M T + P + SR + ++ + Sbjct: 102 RLDKTKQDFLLPHLEN------GRIIMIGATTENPYITINPAIRSR---TQIFEVKPLTE 152 Query: 176 DFLEKVIVKMFAD--RQI-FIDKKLAAYIVQRMERSLV-FAEKLVDKMDNLALSRGM--- 228 +++ I + D R + L +Q + R+ ++ ++ L+ Sbjct: 153 TDIQQAIQEALTDSTRGLGDYPVHLEEKALQHLTRATNGDLRSALNGLE---LAVKSTPK 209 Query: 229 ------GITRSLAAE 237 IT + E Sbjct: 210 NEQGEIKITLPIIEE 224 >gi|239819394|gb|ACS28251.1| cell division control protein [Nicotiana glutinosa] Length = 805 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 65/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP GSGK+ +A ++++ + F SN+ K+ + + Sbjct: 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN 300 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + ++M A P S Sbjct: 301 APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSID-- 358 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PD+ +V+ + + + +++ Sbjct: 359 -PALR-RFGRFDREIDIGVPDEVGRLEVL--RIHTKNMKLAEEV 398 Score = 39.7 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 514 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 570 >gi|60735077|dbj|BAD91024.1| valosin containing protein-1 [Eisenia fetida] gi|147225256|dbj|BAF62455.1| valosine containing peptide-1 [Eisenia fetida] Length = 808 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 48/121 (39%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 235 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 294 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + ++++D + QL +++ + Q ++M A P S Sbjct: 295 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 354 Query: 155 L 155 L Sbjct: 355 L 355 Score = 38.2 bits (88), Expect = 1.0, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 508 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDIFDKA 564 >gi|134046525|ref|YP_001098010.1| AAA family ATPase [Methanococcus maripaludis C5] gi|132664150|gb|ABO35796.1| AAA family ATPase, CDC48 subfamily [Methanococcus maripaludis C5] Length = 784 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 62/162 (38%), Gaps = 33/162 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + V+L GP G+GK+ LA ++++ + + N+ K + + Sbjct: 210 PPKGVLLAGPPGTGKTLLAKAVANEAGANFYTINGPEIMSKYVGETEENLRKIFEEAEEN 269 Query: 107 TRKPVLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + ++ QL +++ + +++ A P S + Sbjct: 270 SPSIIFIDEIDAVAPKRDEASGEVERRMVAQLLTLLDGLEGRGQVVILAATNRPDSIDMA 329 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196 L RL I +PD ++++ R + + Sbjct: 330 LRR-PGRLDRELT--IGIPDRHARKEILQ--IHTRNMPLQPD 366 Score = 39.0 bits (90), Expect = 0.53, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 20/32 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + V+L GP G+GK+ LA +++S + S Sbjct: 540 PPKGVLLFGPPGTGKTLLAKAVANESEANFIS 571 >gi|126434949|ref|YP_001070640.1| recombination factor protein RarA [Mycobacterium sp. JLS] gi|126234749|gb|ABN98149.1| Recombination protein MgsA [Mycobacterium sp. JLS] Length = 445 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 64/156 (41%), Gaps = 27/156 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVL--------L 113 VIL GP G+GK+ LA++ S + S K + +++ R+ +L + Sbjct: 62 VILYGPPGTGKTTLASLISHATGRRFEALSALSAGVKEVRAVIETARQGILRGQQTVLFI 121 Query: 114 EDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +++ L + + LL+ A T S+ V P L SR + ++++ Sbjct: 122 DEVHRFSKTQQDALL----AAVENRIVLLVAATTENPSFSVVAP-LLSR---SLILQLQP 173 Query: 173 PDDDFLEKVIVKMFAD-RQIF----IDKKLAAYIVQ 203 D + +V+ + AD R + + IVQ Sbjct: 174 LAPDSIAEVVRRAVADPRGLADSVDVSDDAVDLIVQ 209 >gi|29376501|ref|NP_815655.1| recombination factor protein RarA [Enterococcus faecalis V583] gi|29343965|gb|AAO81725.1| ATPase, AAA family [Enterococcus faecalis V583] Length = 425 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 71/195 (36%), Gaps = 36/195 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117 +IL GP G+GK+ +A+ + + + R N A + + +LL++I Sbjct: 42 MILYGPPGTGKTSIASAIAGSTNYAFRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIH 101 Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 LD D L H+ N ++M T + P + SR + ++ + Sbjct: 102 RLDKTKQDFLLPHLEN------GRIIMIGATTENPYITINPAIRSR---TQIFEVKPLTE 152 Query: 176 DFLEKVIVKMFAD--RQI-FIDKKLAAYIVQRMERSLV-FAEKLVDKMDNLALSRGM--- 228 +++ I + D R + L +Q + R+ ++ ++ L+ Sbjct: 153 TDIQQAIQEALTDSTRGLGDYPVHLEEKALQHLTRATNGDLRSALNGLE---LAVKSTPK 209 Query: 229 ------GITRSLAAE 237 IT + E Sbjct: 210 NEQGEIKITLPIIEE 224 >gi|302525831|ref|ZP_07278173.1| recombination factor protein RarA [Streptomyces sp. AA4] gi|302434726|gb|EFL06542.1| recombination factor protein RarA [Streptomyces sp. AA4] Length = 460 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 65/157 (41%), Gaps = 28/157 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRK---------PVL 112 V+L GP G+GK+ LAN+ S + S K + ++ + R+ + Sbjct: 73 VLLYGPPGTGKTTLANLVSIATGRRFVAMSALSAGVKEVRGVIEEARRRRQYNTENTVLF 132 Query: 113 LEDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 ++++ L + + LL+ A T S+ V P L SR + V+++ Sbjct: 133 IDEVHRFSKTQQDALL----GAVEDRTVLLVAATTENPSFSVVSP-LLSR---SLVLQLR 184 Query: 172 LPDDDFLEKVIVKMFAD-RQ----IFIDKKLAAYIVQ 203 DD + V+ + AD R + + A++V+ Sbjct: 185 PLTDDDIVAVLERALADERGLGGELTLTDDARAHLVR 221 >gi|327311518|ref|YP_004338415.1| replication factor C large subunit [Thermoproteus uzoniensis 768-20] gi|326947997|gb|AEA13103.1| replication factor C large subunit [Thermoproteus uzoniensis 768-20] Length = 422 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 31/193 (16%), Positives = 67/193 (34%), Gaps = 30/193 (15%) Query: 45 VHSAIEQAVRLIDSWPSWPSRVV------ILVGPSGSGKSCLANIWSDK----------- 87 V + + +W + + +L GP G GK+ L + +++ Sbjct: 30 VCARFRAPEQFCKAWAKNKDKKISEAKAVLLAGPPGIGKTTLVHALANEINYELVELNAS 89 Query: 88 -----SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT--QLFHIINSIHQYDSSL 140 R S+ + +L +++D L+ + L II+ I + Sbjct: 90 DVRTAERIREVVGRGLREGSLFGYAGRLILFDEVDGLNPKEDLGGLNSIIDLIETARVPI 149 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 +MTA W L L + VV + +D + +V+ ++ +I ++ Sbjct: 150 VMTANNP---WDQRLRPLR---DVSLVVSLRRLAEDDVVEVLRRICDSEKIKCEEDALRA 203 Query: 201 IVQRMERSLVFAE 213 + + + L A Sbjct: 204 LARSSDGDLRAAI 216 >gi|323508164|emb|CBQ68035.1| probable RPT1-26S proteasome regulatory subunit [Sporisorium reilianum] Length = 477 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 32/214 (14%), Positives = 69/214 (32%), Gaps = 61/214 (28%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V+L GP G+GK+ A ++++ +T I L + ++ Sbjct: 252 PPKGVLLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTK 311 Query: 113 ------LEDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSW 151 +++D + + +IN + ++ A P + Sbjct: 312 KACIIFFDEVDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDARGNIKVLMATNRPDTL 371 Query: 152 GVCLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM----- 205 L L RL V+ LPD+D ++ R + ++K + +++ R+ Sbjct: 372 DPAL--LRPGRLD--RRVEFGLPDNDGRAHILRIHA--RSMSVEKDIRYHLIARLCPNAT 425 Query: 206 ------------------ERSLVFAEKLVDKMDN 221 R + +D +D Sbjct: 426 GAELRSVATEAGMFAIRARRKMATERDFLDAVDK 459 >gi|282856171|ref|ZP_06265454.1| AAA ATPase central domain protein [Pyramidobacter piscolens W5455] gi|282585930|gb|EFB91215.1| AAA ATPase central domain protein [Pyramidobacter piscolens W5455] Length = 439 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 62/171 (36%), Gaps = 26/171 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS-------------NIAKSLDSILIDTRKPVLL 113 +I GP G GK+ LA I ++++++ + + ++ + + V + Sbjct: 52 MIFWGPPGVGKTTLARIIANQTKAEFINFSAVTSGIKEIRTVMQQAESNRAFGGKTIVFV 111 Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 ++I + F + S +L+ A T S+ V L SR V + Sbjct: 112 DEIHRFNKAQQDAFLPF---VEKGSIILIGATTENPSFEVNGA-LLSR---CKVFVLQAL 164 Query: 174 DDDFLEKVIVKMFAD-----RQ-IFIDKKLAAYIVQRMERSLVFAEKLVDK 218 D L ++ + AD RQ + I +L I A ++ Sbjct: 165 TTDELVSLLQRALADPRGFGRQNVRIAPELLEMIANFANGDARSALSTLEM 215 >gi|257422233|ref|ZP_05599223.1| recombination factor protein rarA [Enterococcus faecalis X98] gi|257164057|gb|EEU94017.1| recombination factor protein rarA [Enterococcus faecalis X98] gi|315157272|gb|EFU01289.1| recombination factor protein RarA [Enterococcus faecalis TX0043] Length = 425 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 71/195 (36%), Gaps = 36/195 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117 +IL GP G+GK+ +A+ + + + R N A + + +LL++I Sbjct: 42 MILYGPPGTGKTSIASAIAGSTNYAFRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIH 101 Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 LD D L H+ N ++M T + P + SR + ++ + Sbjct: 102 RLDKTKQDFLLPHLEN------GRIIMIGATTENPYITINPAIRSR---TQIFEVKPLTE 152 Query: 176 DFLEKVIVKMFAD--RQI-FIDKKLAAYIVQRMERSLV-FAEKLVDKMDNLALSRGM--- 228 +++ I + D R + L +Q + R+ ++ ++ L+ Sbjct: 153 TDIQQAIQEALTDSTRGLGNYPVHLEEKALQHLTRATNGDLRSALNGLE---LAVKSTPK 209 Query: 229 ------GITRSLAAE 237 IT + E Sbjct: 210 NEQGEIKITLPIIEE 224 >gi|145340922|ref|XP_001415566.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144575789|gb|ABO93858.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 804 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 65/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP GSGK+ +A ++++ + F SN+ K+ + + Sbjct: 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 300 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + ++M A P S Sbjct: 301 APAIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGMKSRSHIIVMGATNRPNSID-- 358 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PD+ +V+ + + +D+ + Sbjct: 359 -PALR-RFGRFDREIDIGVPDEVGRLEVL--RIHTKNMKLDEAV 398 Score = 39.4 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 514 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 570 >gi|85691123|ref|XP_965961.1| ATPase [Encephalitozoon cuniculi GB-M1] gi|74697616|sp|Q8SSJ5|CDC48_ENCCU RecName: Full=Cell division control protein 48 gi|19068528|emb|CAD24996.1| PROTEIN OF THE CDC48/PAS1/SEC28 FAMILY OF ATPases [Encephalitozoon cuniculi GB-M1] Length = 780 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 25/166 (15%), Positives = 66/166 (39%), Gaps = 39/166 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 241 PPKGILLYGPPGTGKTLIARAIANETGAFLFLINGPEIMSKMAGESESNLRKAFEEAEKN 300 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID L QL +++ + + +++ A P S Sbjct: 301 SPAIIFIDEIDALAPKREKSQGEVERRIVSQLLTLMDGMKARSNVIVLGATNRPNSID-- 358 Query: 155 LPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L + ++I +PD+ +++ + + + + + Sbjct: 359 -PALR---RYGRFDREIEIGVPDETGRLEIL--RIHTKNMKMSEDV 398 Score = 39.4 bits (91), Expect = 0.44, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 56/164 (34%), Gaps = 47/164 (28%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------ILIDTR 108 P++ V+ GP G GK+ LA + + ++ S L S Sbjct: 514 PAKGVLFYGPPGCGKTLLAKAVATECKANFISIKGPELLSMWVGESESNIRDLFARARGA 573 Query: 109 KPVLL--EDIDLLD----FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 P +L ++ID + ND QL ++ I+Q + ++ A P Sbjct: 574 APCVLFFDEIDSIAKARSGNDGSSGATDRMLNQLLSEMDGINQKKNVFVIGATNRPDQLD 633 Query: 153 --------------VCLPDLCSR---LKAATVVKISLPDDDFLE 179 + LPDL SR L+A P+ D + Sbjct: 634 SALMRPGRLDQLVYIPLPDLDSRVSILQATLKKTPLSPEIDLRQ 677 >gi|220932040|ref|YP_002508948.1| AAA ATPase central domain protein [Halothermothrix orenii H 168] gi|219993350|gb|ACL69953.1| AAA ATPase central domain protein [Halothermothrix orenii H 168] Length = 450 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 40/214 (18%), Positives = 78/214 (36%), Gaps = 46/214 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS-----LDSILIDTRKPVLLEDIDLLDF 121 +IL GP G GK+ LA + + K+ A + + ++ K L I + F Sbjct: 57 LILYGPPGCGKTSLAQVIARKTEGKFIRINAVTSGVSKIREVIDKASKNRSLHGIKTILF 116 Query: 122 -NDTQLFHIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 ++ H N + + L+ A T + V P L SR + +V++ Sbjct: 117 IDEI---HRFNKSQQDALLPAVESGTITLIGATTENPYFEVNSP-LLSR---SRIVRLKP 169 Query: 173 PDDDFLEKVIVKMF--ADRQI-----FIDKKLAAYIVQRMERSLV--FAEKLVDKMDNLA 223 + + K++ +R + I + Y+ S+ A ++ ++ Sbjct: 170 LKKEDIIKILKNALNNEERGLGNYNIDISQDALQYLA-----SIAGGDARTALNGLEIAV 224 Query: 224 LS-----------RGMGITRSLAAEVLKETQQCD 246 L+ I+ SL ++LK +Q D Sbjct: 225 LTTPPDKEGIIHINKNIISESLQKKLLKYDKQGD 258 >gi|325001185|ref|ZP_08122297.1| recombination factor protein RarA [Pseudonocardia sp. P1] Length = 462 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 59/144 (40%), Gaps = 26/144 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTR-------FSNIAKSLDSILIDTRK---------P 110 V+L GP G+GK+ LA + + + R S K L +++ + R+ Sbjct: 68 VLLYGPPGTGKTTLARLMAGAGGAERHFVALSALSAGVKELRAVIEEARRRRDRSGTSTV 127 Query: 111 VLLEDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 + ++++ L + LL+ A T S+ V P L SR + V++ Sbjct: 128 LFIDEVHRFSRTQQDALL----GAVEDRLVLLVAATTENPSFSVVSP-LLSR---SLVLQ 179 Query: 170 ISLPDDDFLEKVIVKM-FADRQIF 192 + +D + ++ + ++R + Sbjct: 180 LQSLGEDDVRALLRRAVASERGLA 203 >gi|221632730|ref|YP_002521951.1| Holliday junction DNA helicase RuvB [Thermomicrobium roseum DSM 5159] gi|254767447|sp|B9KZ09|RUVB_THERP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|221155832|gb|ACM04959.1| Holliday junction DNA helicase RuvB [Thermomicrobium roseum DSM 5159] Length = 353 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 75/222 (33%), Gaps = 28/222 (12%) Query: 45 VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL 104 V ++ A+R P ++ GP G GK+ LA I + + +++ Sbjct: 36 VKESLAIAIRAAQE-RGEPLDHLLFYGPPGLGKTTLAGIIAAEMGVNLRITSGPAIERPG 94 Query: 105 IDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY---------DSSLLMTARTFPVSWGVCL 155 L D+L ++ H +N + + L++ S + L Sbjct: 95 DLVSILTNLRPGDVLFIDEI---HRLNRLVEEILYPAMEDFAVDLVIGKGPAARSVRIAL 151 Query: 156 PD------------LCS--RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 P L S R + ++ D L ++ + Q+ I A I Sbjct: 152 PRFTLVGATTRLALLTSPLRDRFGATYRLDFYDTAALRAIVERAARILQVPITSDGAEEI 211 Query: 202 VQRMERSLVFAEKLVDKM-DNLALSRGMGITRSLAAEVLKET 242 +R + A +L+ ++ D + ITR LA L + Sbjct: 212 ARRGRGTPRIAIRLLKRVRDYAQVIGDGTITRELARLALDQL 253 >gi|33866690|ref|NP_898249.1| recombination factor protein RarA/unknown domain fusion protein [Synechococcus sp. WH 8102] gi|33633468|emb|CAE08673.1| putative ATPase, AAA family [Synechococcus sp. WH 8102] Length = 751 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 61/170 (35%), Gaps = 24/170 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA I ++ +R+ S A + ++ L Sbjct: 74 LILHGPPGVGKTTLARIVANHTRAHFSSLNAVLAGVKDLRAEVDAAKLRLERHGLRSI-L 132 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H NS + + L+ A T + V L SR + + ++ + Sbjct: 133 FIDEVHRFNSAQQDALLPWVENGTVTLIGATTENPYFEVNKA-LVSR---SRLFRLLPLE 188 Query: 175 DDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 D L +++ + D R++ + AA++V ++ Sbjct: 189 PDDLHQLLQRALNDEERGYGTRRVTVTPDAAAHLVDVAGGDARSLLNALE 238 >gi|317010695|gb|ADU84442.1| recombination factor protein RarA [Helicobacter pylori SouthAfrica7] Length = 391 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 69/184 (37%), Gaps = 21/184 (11%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILI--------DTRKPVLLE 114 GP G GK+ LA I + F+ L+ + + + V ++ Sbjct: 38 PHAFFYGPPGVGKTSLAQIIARSLERPILLFNATDFKLEDLRLKLKNYQNTLLKPVVFID 97 Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 + L+ + I + D +L++ A T ++ + + SR + + +++ + Sbjct: 98 ETHRLNKTQQEFLLPI---MEKDHALILGASTQDPNYSLSHA-IRSR---SFIFELTPLN 150 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234 L+++ K A + I+ Y++ S A L++ +D L+ IT Sbjct: 151 KSDLDRLCAKALALLKKQIEPNAKTYLLNN---SAGDARALLNLLD-LSAKIENPITLKT 206 Query: 235 AAEV 238 + Sbjct: 207 IKSL 210 >gi|225174582|ref|ZP_03728580.1| AAA ATPase central domain protein [Dethiobacter alkaliphilus AHT 1] gi|225169709|gb|EEG78505.1| AAA ATPase central domain protein [Dethiobacter alkaliphilus AHT 1] Length = 445 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 66/198 (33%), Gaps = 31/198 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS-----LDSILIDTRKPVLLEDIDLLDF 121 ++ GP G+GK+ LA I ++K+ + A S L + R + E + F Sbjct: 55 LLFYGPPGTGKTTLAEIIAEKTNAAFVRVNAVSSSVSELRKEMEAARNRLAQEGKRTVLF 114 Query: 122 NDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 D H N + +L+ A T + V P L SR++ + Sbjct: 115 VDEI--HRFNKAQQDALLPAVEKGIVVLIGATTENPYFTVNAP-LLSRMR---IFPFEPL 168 Query: 174 DDDFLEKVIVKM-----FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR-- 226 + + ++V+ + + ++ A ++ AL+ Sbjct: 169 SAEDVRALLVRAQSEPEARLETVEFTDEALDHLAMMANGDARTALNALEM--AAALASPG 226 Query: 227 ---GMGITRSLAAEVLKE 241 + +L E ++ Sbjct: 227 EDGNKEVDITLVEEAVQR 244 >gi|225386739|ref|ZP_03756503.1| hypothetical protein CLOSTASPAR_00487 [Clostridium asparagiforme DSM 15981] gi|225047150|gb|EEG57396.1| hypothetical protein CLOSTASPAR_00487 [Clostridium asparagiforme DSM 15981] Length = 443 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 62/172 (36%), Gaps = 24/172 (13%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I GP G+GK+ LA + ++ + + A ++ +++ + T Sbjct: 55 GSIIFYGPPGTGKTTLAKVIANTTSADFRQINATVAGKKDMEEVVHAAKDNMGMYGKK-T 113 Query: 125 QLF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + + +L+ A T + V L SR + + ++ Sbjct: 114 ILFVDEIHRFNKGQQDYLLPFVEDGTLILIGATTENPYFEVNGA-LLSR---SRIFELKP 169 Query: 173 PDDDFLEKVIVKMF--ADRQI-----FIDKKLAAYIVQRMERSLVFAEKLVD 217 + + + ++I + DR + ID A ++ A V+ Sbjct: 170 LEKEDIRELIRRAVYDRDRGMGTYDAVIDDDAAEFLADTANGDARAALNAVE 221 >gi|11265361|pir||T48355 transitional endoplasmic reticulum ATPase - Arabidopsis thaliana gi|7378614|emb|CAB83290.1| transitional endoplasmic reticulum ATPase [Arabidopsis thaliana] Length = 843 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 64/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP GSGK+ +A ++++ + F SN+ K+ + + Sbjct: 273 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN 332 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + ++M A P S Sbjct: 333 APSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSID-- 390 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PD+ +V+ + + + + + Sbjct: 391 -PALR-RFGRFDREIDIGVPDEIGRLEVL--RIHTKNMKLAEDV 430 Score = 40.1 bits (93), Expect = 0.31, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 546 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 602 >gi|300813628|ref|ZP_07093956.1| recombination factor protein RarA [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512264|gb|EFK39436.1| recombination factor protein RarA [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 436 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 35/202 (17%), Positives = 80/202 (39%), Gaps = 32/202 (15%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS-----LDSILIDTRKPVLLEDIDLL 119 ++ GP G GK+ LA I ++ + A + L +L + +I+ + Sbjct: 53 NSLLFYGPPGVGKTTLAKIIANLTNKNFVELSAVTSNIKELREVLQKAQDDFKFSNIETI 112 Query: 120 DF-NDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 F ++ H N + +L+ A T + V L SRL+ ++ + Sbjct: 113 VFIDEI---HRFNKTQQDALLPYVERGIIILIGATTENPYFEVNKA-LLSRLQ---ILNL 165 Query: 171 SLPDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 ++ + K+I + +D+ +I + ++ ++++ S L++ ++ Sbjct: 166 KALENKDMNKLIDRAISDKIKGFGNLKINLSEQAREFLIRN---SSGDGRFLLNSLEIAV 222 Query: 224 LSRGMGIT-RSLAAEVLKETQQ 244 LS +L +VL+ + Q Sbjct: 223 LSTDKVDNEVNLTLDVLENSMQ 244 >gi|294893598|ref|XP_002774552.1| cell division cycle protein, putative [Perkinsus marinus ATCC 50983] gi|239879945|gb|EER06368.1| cell division cycle protein, putative [Perkinsus marinus ATCC 50983] Length = 808 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 59/150 (39%), Gaps = 33/150 (22%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R V+L GP G GK+ +A ++++ + F SN+ K+ + + Sbjct: 244 PPRGVLLYGPPGCGKTLIARAIANETGAFFFLINGPEVMSKMAGEAESNLRKAFEEAEKN 303 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + +++ A P S Sbjct: 304 APAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGLKSRGQVVILGATNRPNS---V 360 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIV 183 P L R + + I +PDD+ +++ Sbjct: 361 DPALR-RFGRFDRELDIGVPDDNGRMEILR 389 >gi|197121182|ref|YP_002133133.1| recombination factor protein RarA [Anaeromyxobacter sp. K] gi|196171031|gb|ACG72004.1| AAA ATPase central domain protein [Anaeromyxobacter sp. K] Length = 437 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 37/203 (18%), Positives = 72/203 (35%), Gaps = 41/203 (20%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFS--------------NIAKSLDSILIDTRKP 110 +IL GP G+GK+ LA I + ++ + A + R Sbjct: 52 PSLILWGPPGTGKTTLARIVAQRTGADFVPFSAVLGGVKEIREIVAAARDRRRMHRKRTI 111 Query: 111 VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 + +++I F + + L+ A T S+ V L SR V + Sbjct: 112 LFVDEIHRFTRAQQDAFLPH---VEDGTITLIGATTENPSFEVNAA-LLSR---CRVATL 164 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYI---------VQRMERSLVFAEKLVDKMDN 221 +D + ++ DR + + LA + + R+ S A K ++ ++ Sbjct: 165 RALTEDEVAALL-----DRAVAAPEGLAGAVALTPEARDTIARL--SYGDARKALNALEV 217 Query: 222 LA----LSRGMGITRSLAAEVLK 240 A L+ + ++ A E L+ Sbjct: 218 SAAAVRLAGRPAVEKADAEEALQ 240 >gi|187923044|ref|YP_001894686.1| recombination factor protein RarA [Burkholderia phytofirmans PsJN] gi|187714238|gb|ACD15462.1| AAA ATPase central domain protein [Burkholderia phytofirmans PsJN] Length = 437 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 35/189 (18%), Positives = 68/189 (35%), Gaps = 20/189 (10%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA + +D + + ++ S + D R+ V I + + T + Sbjct: 48 MILWGPPGVGKTTLARLMADAFHAEFIA--LSAVLSGVKDIREAVETAQIHRANGHQTLV 105 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N + + + A T S+ V L SR A V + Sbjct: 106 FVDEVHRFNKSQQDAFLPHVESGLFVFVGATTENPSFEVNSA-LLSR---AAVYVLKSLT 161 Query: 175 DDFLEKVIVKMFAD-RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITR 232 DD +++ + + + + ++ + ++ + A + I Sbjct: 162 DDEQRELLERAQQELGGLTFTDEARDALIGSADGDGRKLLNNLEIVARAASQQKTTEIDG 221 Query: 233 SLAAEVLKE 241 +L L E Sbjct: 222 ALLGSALAE 230 >gi|149190994|ref|ZP_01869255.1| hypothetical protein VSAK1_00065 [Vibrio shilonii AK1] gi|148835128|gb|EDL52104.1| hypothetical protein VSAK1_00065 [Vibrio shilonii AK1] Length = 452 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 45/199 (22%), Positives = 69/199 (34%), Gaps = 38/199 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G+GK+ LA + ++ + + A + I E+ L T L Sbjct: 54 MILWGPPGTGKTTLAEVAANYADAEVERVSAVTSGVKDIRAAIERAREN--KLAGKRTIL 111 Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172 F H N Q D ++ T L SR A V K++ Sbjct: 112 FVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKLTS 165 Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIV------QRMERSLVFAEKLVDKM 219 D + V+ + D R + + + RM SL + E L D Sbjct: 166 LDKADILLVLEQARDDEKRGLGTIAANFHDNVLERLAELVNGDARM--SLNYLELLYDMA 223 Query: 220 DNLALSRGMGITRSLAAEV 238 ++ A IT +L AEV Sbjct: 224 EDNA-QGEKDITLALLAEV 241 >gi|300784614|ref|YP_003764905.1| ATPase [Amycolatopsis mediterranei U32] gi|299794128|gb|ADJ44503.1| putative ATPase [Amycolatopsis mediterranei U32] Length = 458 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 61/157 (38%), Gaps = 28/157 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL--------------DSILIDTRKPVL 112 V+L GP G+GK+ LAN+ S + + A S + Sbjct: 74 VLLYGPPGTGKTTLANLVSIATGRRFVAMSALSAGVKEVRGVIEEARRRRQYNAENTVLF 133 Query: 113 LEDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 ++++ L + + LL+ A T S+ V P L SR + V+++ Sbjct: 134 IDEVHRFSKTQQDALL----GAVEDRTVLLVAATTENPSFSVVSP-LLSR---SLVLQLR 185 Query: 172 LPDDDFLEKVIVKMFAD-RQ----IFIDKKLAAYIVQ 203 D+ + ++ + AD R + + + A++V+ Sbjct: 186 PLTDEDITALLERALADERGLGGELTLTEDARAHLVR 222 >gi|294939027|ref|XP_002782298.1| cell division cycle protein 48, putative [Perkinsus marinus ATCC 50983] gi|239893837|gb|EER14093.1| cell division cycle protein 48, putative [Perkinsus marinus ATCC 50983] Length = 747 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 59/150 (39%), Gaps = 33/150 (22%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R V+L GP G GK+ +A ++++ + F SN+ K+ + + Sbjct: 183 PPRGVLLYGPPGCGKTLIARAIANETGAFFFLINGPEVMSKMAGEAESNLRKAFEEAEKN 242 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + +++ A P S Sbjct: 243 APAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGLKSRGQVVILGATNRPNS---V 299 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIV 183 P L R + + I +PDD+ +++ Sbjct: 300 DPALR-RFGRFDRELDIGVPDDNGRMEILR 328 >gi|225075711|ref|ZP_03718910.1| hypothetical protein NEIFLAOT_00727 [Neisseria flavescens NRL30031/H210] gi|224952982|gb|EEG34191.1| hypothetical protein NEIFLAOT_00727 [Neisseria flavescens NRL30031/H210] Length = 435 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 61/153 (39%), Gaps = 23/153 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G GK+ LA I + + A S + D R + +I L T L Sbjct: 50 MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIRGAIDKAEIALQQGRATIL 107 Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 F H N Q D+ L L+T A T S+ V P L SR A V + Sbjct: 108 FVDEVHRFNKAQQ-DAFLPYVESGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQPL 162 Query: 174 DDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQ 203 D L+K++ K+ A R I+ +V Sbjct: 163 SSDGLKKLVAKVLALPEYRDFTIEADAQELLVN 195 >gi|148229844|ref|NP_001079683.1| 26S protease regulatory subunit 6A-B [Xenopus laevis] gi|28422359|gb|AAH46948.1| Psmc3-b protein [Xenopus laevis] Length = 423 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 73/201 (36%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 203 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFSLAKEK 262 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + + ++N + Q + + ++ A Sbjct: 263 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPTTQVKVIAATNRVDIL 322 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ +P+++ +++ R++ + + + R Sbjct: 323 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 376 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ ++ G T Sbjct: 377 GAQCKAVCVEAGMIALRRGAT 397 >gi|315923824|ref|ZP_07920053.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC 23263] gi|315622857|gb|EFV02809.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC 23263] Length = 817 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 41/93 (44%), Gaps = 6/93 (6%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK----PVLLEDIDLLD 120 + V L G G+GK+ L + S +S I + + V+++D+++L Sbjct: 37 QTVYLHGVMGTGKTSLITYFLKDSAFVYYSAIRTEAADLTAEAGTFSPFAVVIDDLEVLA 96 Query: 121 FNDTQLFHI--INSIHQYDSSLLMTARTFPVSW 151 + + F++ I Q D L++ +R+ W Sbjct: 97 EDRREAFYLAVERLIRQKDVWLVLISRSMMPRW 129 >gi|193617621|ref|XP_001949588.1| PREDICTED: transitional endoplasmic reticulum ATPase TER94-like [Acyrthosiphon pisum] Length = 804 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 78/201 (38%), Gaps = 52/201 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 235 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADRN 294 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148 + + ++++D + QL +++ + ++M A P Sbjct: 295 SPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKSSSHVIVMAATNRPNSIDSA 354 Query: 149 --------VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV-IVKMFADRQIFIDKKLAA 199 + +PD RL+ V++I + E+V + ++ A+ + LA+ Sbjct: 355 LRRFGRFDREIDIGIPDATGRLE---VLRIHTKNMKLAEEVDLEQIAAETHGHVGADLAS 411 Query: 200 YIVQRMERSLVFAEKLVDKMD 220 S +++ +KMD Sbjct: 412 LC------SEAALQQIREKMD 426 Score = 40.1 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 508 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKA 564 >gi|57650509|ref|YP_186522.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus COL] gi|151221741|ref|YP_001332563.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus str. Newman] gi|161353524|ref|YP_500242.2| recombination factor protein RarA [Staphylococcus aureus subsp. aureus NCTC 8325] gi|162138568|ref|YP_494279.2| recombination factor protein RarA [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|221141103|ref|ZP_03565596.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253733121|ref|ZP_04867286.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus aureus subsp. aureus TCH130] gi|258450546|ref|ZP_05698608.1| recombination factor protein RarA [Staphylococcus aureus A5948] gi|262048620|ref|ZP_06021503.1| hypothetical protein SAD30_1016 [Staphylococcus aureus D30] gi|262051167|ref|ZP_06023391.1| hypothetical protein SA930_1598 [Staphylococcus aureus 930918-3] gi|282920175|ref|ZP_06327900.1| conserved hypothetical AAA domain-containing protein yrvN [Staphylococcus aureus A9765] gi|284024684|ref|ZP_06379082.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus 132] gi|304380776|ref|ZP_07363443.1| AAA family ATPase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|57284695|gb|AAW36789.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus COL] gi|150374541|dbj|BAF67801.1| ATPase AAA family protein [Staphylococcus aureus subsp. aureus str. Newman] gi|253728877|gb|EES97606.1| crossover junction endodeoxyribonuclease ATPase [Staphylococcus aureus subsp. aureus TCH130] gi|257861704|gb|EEV84503.1| recombination factor protein RarA [Staphylococcus aureus A5948] gi|259160804|gb|EEW45824.1| hypothetical protein SA930_1598 [Staphylococcus aureus 930918-3] gi|259163267|gb|EEW47826.1| hypothetical protein SAD30_1016 [Staphylococcus aureus D30] gi|269941113|emb|CBI49499.1| putative ATPase [Staphylococcus aureus subsp. aureus TW20] gi|282594523|gb|EFB99508.1| conserved hypothetical AAA domain-containing protein yrvN [Staphylococcus aureus A9765] gi|302751456|gb|ADL65633.1| DNA-directed DNA polymerase III gamma and tau subunits [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340652|gb|EFM06585.1| AAA family ATPase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315198674|gb|EFU29002.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus CGS01] gi|329314302|gb|AEB88715.1| ATPase [Staphylococcus aureus subsp. aureus T0131] gi|329728332|gb|EGG64769.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus 21189] Length = 424 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 73/201 (36%), Gaps = 40/201 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117 +I GP G GK+ +A S ++ + ++ ++ + + +LL++I Sbjct: 43 MIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIH 102 Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 L D L H+ N +L+ T + P + SR A + ++ Sbjct: 103 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 151 Query: 174 DDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 +D+ + + + + D Q ID+ Y + S ++ ++ LS Sbjct: 152 NDEDVRQALTRAIEDDENGLKTYQPKIDEDAMTYFSTQ---SQGDVRSALNALELAVLSA 208 Query: 227 G------MGITRSLAAEVLKE 241 +T A + L++ Sbjct: 209 DNDKDGYRHVTLQDAKDCLQK 229 >gi|49483872|ref|YP_041096.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus MRSA252] gi|257425751|ref|ZP_05602175.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus 55/2053] gi|257428411|ref|ZP_05604809.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus 65-1322] gi|257431049|ref|ZP_05607428.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus 68-397] gi|257433735|ref|ZP_05610093.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus E1410] gi|257436650|ref|ZP_05612694.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus M876] gi|282904207|ref|ZP_06312095.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus C160] gi|282906033|ref|ZP_06313888.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus Btn1260] gi|282908947|ref|ZP_06316765.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911264|ref|ZP_06319066.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus WBG10049] gi|282914432|ref|ZP_06322218.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus M899] gi|282919401|ref|ZP_06327136.1| ATPase [Staphylococcus aureus subsp. aureus C427] gi|282924726|ref|ZP_06332394.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus C101] gi|283958387|ref|ZP_06375838.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus A017934/97] gi|293503506|ref|ZP_06667353.1| ATPase [Staphylococcus aureus subsp. aureus 58-424] gi|293510524|ref|ZP_06669230.1| AAA domain-containing protein yrvN [Staphylococcus aureus subsp. aureus M809] gi|293531064|ref|ZP_06671746.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus M1015] gi|297590829|ref|ZP_06949467.1| AAA family ATPase [Staphylococcus aureus subsp. aureus MN8] gi|49242001|emb|CAG40698.1| putative ATPase [Staphylococcus aureus subsp. aureus MRSA252] gi|257271445|gb|EEV03591.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus 55/2053] gi|257275252|gb|EEV06739.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus 65-1322] gi|257278252|gb|EEV08894.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus 68-397] gi|257281828|gb|EEV11965.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus E1410] gi|257284001|gb|EEV14124.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus M876] gi|282313561|gb|EFB43956.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus C101] gi|282317211|gb|EFB47585.1| ATPase [Staphylococcus aureus subsp. aureus C427] gi|282321613|gb|EFB51938.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus M899] gi|282324959|gb|EFB55269.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus WBG10049] gi|282327211|gb|EFB57506.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331325|gb|EFB60839.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus Btn1260] gi|282595825|gb|EFC00789.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus C160] gi|283790536|gb|EFC29353.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus A017934/97] gi|290920332|gb|EFD97398.1| ATPase, AAA family [Staphylococcus aureus subsp. aureus M1015] gi|291095172|gb|EFE25437.1| ATPase [Staphylococcus aureus subsp. aureus 58-424] gi|291466888|gb|EFF09408.1| AAA domain-containing protein yrvN [Staphylococcus aureus subsp. aureus M809] gi|297575715|gb|EFH94431.1| AAA family ATPase [Staphylococcus aureus subsp. aureus MN8] gi|312437905|gb|ADQ76976.1| AAA family ATPase [Staphylococcus aureus subsp. aureus TCH60] gi|315195528|gb|EFU25915.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus CGS00] Length = 424 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 73/201 (36%), Gaps = 40/201 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117 +I GP G GK+ +A S ++ + ++ ++ + + +LL++I Sbjct: 43 MIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIH 102 Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 L D L H+ N +L+ T + P + SR A + ++ Sbjct: 103 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 151 Query: 174 DDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 +D+ + + + + D Q ID+ Y + S ++ ++ LS Sbjct: 152 NDEDVRQALTRAIEDEENGLKTYQPKIDEDAMTYFSTQ---SQGDVRSALNALELAVLSA 208 Query: 227 G------MGITRSLAAEVLKE 241 +T A + L++ Sbjct: 209 DNDKDGYRHVTLQDAKDCLQK 229 >gi|262202249|ref|YP_003273457.1| ATPase AAA [Gordonia bronchialis DSM 43247] gi|262085596|gb|ACY21564.1| AAA ATPase central domain protein [Gordonia bronchialis DSM 43247] Length = 460 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 72/182 (39%), Gaps = 30/182 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVL--------L 113 V+L GP G+GK+ +A++ S + S K + +++ R+ ++ + Sbjct: 66 VLLYGPPGTGKTTMASLISRATGGRFEALSALSAGVKEVRAVIDIARRRLVEGQQTVLFI 125 Query: 114 EDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +++ L + LL+ A T S+ V P L SR + V+++ Sbjct: 126 DEVHRFSKTQQDALL----DAVENRIVLLVAATTENPSFSVVAP-LLSR---SLVLQLRS 177 Query: 173 PDDDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 DD + +V+ + AD R + I ++V S A + + ++ A + Sbjct: 178 LSDDDILEVLGRAVADPRGLDGRVEITDAALDHLVAV---SGGDARRALTALEASADAAL 234 Query: 228 MG 229 Sbjct: 235 RE 236 >gi|226227315|ref|YP_002761421.1| ATPase [Gemmatimonas aurantiaca T-27] gi|226090506|dbj|BAH38951.1| ATPase [Gemmatimonas aurantiaca T-27] Length = 459 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 65/176 (36%), Gaps = 28/176 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++ GP G GK+ LA + + + + S A S + R+ V + T L Sbjct: 58 MVFWGPPGVGKTTLARLLAQSTEAAFVSFSAVS--DGVARVREIVAEAERRRDGGRGTIL 115 Query: 127 F----HIINSIHQY--------DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N Q + +L+ A T S+ + L SR++ + I + Sbjct: 116 FVDEIHRFNRAQQDAFLPHVETGTVVLIGATTENPSFALTGA-LLSRVRVMVLEAIPV-- 172 Query: 175 DDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 LE ++ + D R + ID + E S A +L+ ++ A Sbjct: 173 -STLEGLVQRAVEDRDRGLGARGLSIDDDARHLLA---ESSDGDARRLLGVLEAAA 224 >gi|160875433|ref|YP_001554749.1| recombination factor protein RarA [Shewanella baltica OS195] gi|160860955|gb|ABX49489.1| AAA ATPase central domain protein [Shewanella baltica OS195] gi|315267623|gb|ADT94476.1| AAA ATPase central domain protein [Shewanella baltica OS678] Length = 443 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 39/196 (19%), Positives = 72/196 (36%), Gaps = 35/196 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLD---F 121 ++L GP G+GK+ LA + + S + R S + + I +E + Sbjct: 52 MMLWGPPGTGKTTLAELIAHYSNAHVERISAVTSGVKDIR------AAIEQAKAVAESRG 105 Query: 122 NDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 T LF H N + + + + A T S+ + L SR A V Sbjct: 106 QRTLLFVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEINNA-LLSR---ARVYL 161 Query: 170 ISLPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 I D + ++ + +D RQ + + + Q + A L++ M ++ Sbjct: 162 IKRLSHDEIAHIVTQALSDTERGLGQRQFVMPTDVLTTLAQLCDGDARKALNLIELMGDM 221 Query: 223 ALSRGMGITRSLAAEV 238 L+ G T + +V Sbjct: 222 -LADGGTFTTEMLIQV 236 >gi|225456951|ref|XP_002281671.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|297733738|emb|CBI14985.3| unnamed protein product [Vitis vinifera] Length = 814 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 26/164 (15%), Positives = 63/164 (38%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP GSGK+ +A ++++ + F SN+ K+ + + Sbjct: 246 PPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 305 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + ++++D + QL +++ + +++ A P S Sbjct: 306 APSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKTRAHVIVIGATNRPNSID-- 363 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PD+ +V+ + + + + Sbjct: 364 -PALR-RFGRFDREIDIGVPDEVGRLEVL--RIHTKNMKLSDDV 403 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 519 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 575 >gi|52425453|ref|YP_088590.1| recombination factor protein RarA [Mannheimia succiniciproducens MBEL55E] gi|52307505|gb|AAU38005.1| unknown [Mannheimia succiniciproducens MBEL55E] Length = 449 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 30/145 (20%), Positives = 55/145 (37%), Gaps = 22/145 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I GPSG GK+ LA I + ++ + FS + + I + + D T Sbjct: 63 MIFWGPSGVGKTTLAQIIAHQTNAKFITFSAVVSGIKDIKKIMEEA----ETDREMGEKT 118 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +F H N + S +L+ A T S+ + L SR V + Sbjct: 119 IVFIDEIHRFNKAQQDAFLPYVEKGSIILIGATTENPSFEINSA-LLSR---CKVFVLEA 174 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKL 197 ++ + ++ + Q FI ++ Sbjct: 175 LSNNDIVLLLKQALNHPQAFIPLEV 199 >gi|46201680|ref|ZP_00054588.2| COG0593: ATPase involved in DNA replication initiation [Magnetospirillum magnetotacticum MS-1] Length = 286 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 37/125 (29%), Gaps = 26/125 (20%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLANIWSDKSR 89 P + + +V E A + L G G GK+ L + + R Sbjct: 118 PLDARFTFKNFVVGKPNEFAWAAARRIAEADQVSFNPLFLYGGVGLGKTHLMHAIAHHIR 177 Query: 90 ST----------------RFSNIAKSLDSILIDTR----KPVLLEDIDLLDFND---TQL 126 RF + D++ + ++++D+ + D + Sbjct: 178 ERNPERSVLYLSAEKFMYRFIRALRGQDTMSFKEQFRSVDVLMIDDVQFIAGKDATQEEF 237 Query: 127 FHIIN 131 FH N Sbjct: 238 FHTFN 242 >gi|319652986|ref|ZP_08007091.1| hypothetical protein HMPREF1013_03706 [Bacillus sp. 2_A_57_CT2] gi|317395335|gb|EFV76068.1| hypothetical protein HMPREF1013_03706 [Bacillus sp. 2_A_57_CT2] Length = 275 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 16/75 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110 P + ++L GP G+GK+ LA + + +T FS + + + Sbjct: 186 PPKGILLYGPPGTGKTLLAQAIAKELGATFFSTSGSGFNELFVGVGASRVRNLFQNARKH 245 Query: 111 ----VLLEDIDLLDF 121 V ++++D L Sbjct: 246 APAVVFIDEVDALAG 260 >gi|307275918|ref|ZP_07557051.1| recombination factor protein RarA [Enterococcus faecalis TX2134] gi|306507248|gb|EFM76385.1| recombination factor protein RarA [Enterococcus faecalis TX2134] Length = 425 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 71/195 (36%), Gaps = 36/195 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117 +IL GP G+GK+ +A+ + + + R N A + + +LL++I Sbjct: 42 MILYGPPGTGKTSIASAIAGSTNYAFRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIH 101 Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 LD D L H+ N ++M T + P + SR + ++ + Sbjct: 102 RLDKTKQDFLLPHLEN------GRIIMIGATTENPYITINPAIRSR---TQIFEVKPLTE 152 Query: 176 DFLEKVIVKMFAD--RQI-FIDKKLAAYIVQRMERSLV-FAEKLVDKMDNLALSRGM--- 228 +++ I + D R + L +Q + R+ ++ ++ L+ Sbjct: 153 TDIQQAIQEALTDSTRGLGDYPVHLEEKALQHLTRATNGDLRSALNGLE---LAVKSTPK 209 Query: 229 ------GITRSLAAE 237 IT + E Sbjct: 210 NEQGEIKITLPIIEE 224 >gi|221485041|gb|EEE23331.1| werner helicase interacting protein, putative [Toxoplasma gondii GT1] Length = 586 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 40/240 (16%), Positives = 76/240 (31%), Gaps = 43/240 (17%) Query: 12 VPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLL-----VHSAIEQAVRLIDSWPSWPSRV 66 +P ++ D + + + S ++ + + L+++ Sbjct: 72 LPADRRGDPGRRDAVSVPLAERLRPA-SLEEYVGQRGCIQGGRGSIRELLEA---GHLPS 127 Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125 +IL GP G GK+ I RS N A SL + V D+ Sbjct: 128 LILWGPPGCGKT---TIALLAGRSVGKKNSALSLPPPVFKKMSAVTCGVNDVRKVVQEAL 184 Query: 126 -----------LF----HIINSIHQY--------DSSLLMTARTFPVSWGVCLPDLCSRL 162 LF H N Q + L+ A T S+ V L SR Sbjct: 185 TLRATTKQKTVLFLDEIHRFNKAQQDALLPHVETGTITLIGATTENPSFEVNRA-LLSR- 242 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 V K+ ++ L ++ + + + I + I + + A + ++ ++N Sbjct: 243 --CRVCKLEPLTEEDLTTILQRAAKEENVTITEAAVRVICRLAD---GDARRALNMLENA 297 >gi|325120694|emb|CBZ56249.1| putative ATPase, AAA family domain containing protein [Neospora caninum Liverpool] Length = 1056 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 30/180 (16%), Positives = 62/180 (34%), Gaps = 32/180 (17%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTR----------FSNIAKSLDSILIDTRKPVLLE 114 +IL GP G GK+ LA + + S + ++ + ++ + L Sbjct: 616 PSLILWGPPGCGKTTLALLAGRCTNRKSPLSLPPVFKKMSAVTCGVNDVRKVVQEALTL- 674 Query: 115 DIDLLDFNDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRL 162 T LF H N + + L+ A T S+ V L SR Sbjct: 675 --RATTKQKTILFLDEIHRFNKAQQDALLPHVESGTVTLIGATTENPSFEVNRA-LLSR- 730 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 V K+ +D L ++ + + + + + + + + A + ++ ++N Sbjct: 731 --CRVCKLEPLTEDNLTVILQRAAKEENVTVTEAAVRVLCRLAD---GDARRALNMLENA 785 >gi|288929609|ref|ZP_06423453.1| ATPase, AAA family [Prevotella sp. oral taxon 317 str. F0108] gi|288329114|gb|EFC67701.1| ATPase, AAA family [Prevotella sp. oral taxon 317 str. F0108] Length = 425 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 37/218 (16%), Positives = 72/218 (33%), Gaps = 40/218 (18%) Query: 39 SRDDL-----LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--SRST 91 S DD LV +I+ IL GP G GK+ LA I + K + Sbjct: 13 SLDDYVGQKHLVGP-NAVLRNMIE---GGRIPSFILWGPPGVGKTTLAQIVAKKLETPFY 68 Query: 92 RFSNIAKSLDSI-----------LIDTRKPVL-LEDIDLLDFNDT-QLFHIINSIHQYDS 138 S + + + + P+L +++I + L + Sbjct: 69 TLSAVTSGVKDVREVIEKAKGGRFFGSHSPILFIDEIHRFSKSQQDSLL----GAVEKGI 124 Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM------FADRQIF 192 L+ A T S+ V P L SR + + + LE++I + R I Sbjct: 125 VTLIGATTENPSFEVIRP-LLSR---CQLYVLQSLSKEDLEELIQRALHTDVVLQQRNIE 180 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 + + A +++ +++ + + + + Sbjct: 181 VKESTA--LIRYSGGDARKLLNILELVVEASPANASPV 216 >gi|227519321|ref|ZP_03949370.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis TX0104] gi|227555471|ref|ZP_03985518.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis HH22] gi|229545438|ref|ZP_04434163.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis TX1322] gi|255975483|ref|ZP_05426069.1| AAA ATPase [Enterococcus faecalis T2] gi|256762908|ref|ZP_05503488.1| recombination factor protein RarA [Enterococcus faecalis T3] gi|256853493|ref|ZP_05558863.1| recombination factor protein RarA [Enterococcus faecalis T8] gi|256961533|ref|ZP_05565704.1| AAA ATPase [Enterococcus faecalis Merz96] gi|257087183|ref|ZP_05581544.1| AAA ATPase [Enterococcus faecalis D6] gi|257090260|ref|ZP_05584621.1| recombination factor protein rarA [Enterococcus faecalis CH188] gi|257419659|ref|ZP_05596653.1| recombination factor protein rarA [Enterococcus faecalis T11] gi|293384708|ref|ZP_06630563.1| ATPase, AAA family [Enterococcus faecalis R712] gi|293387408|ref|ZP_06631963.1| ATPase, AAA family [Enterococcus faecalis S613] gi|294779740|ref|ZP_06745127.1| recombination factor protein RarA [Enterococcus faecalis PC1.1] gi|307268134|ref|ZP_07549521.1| recombination factor protein RarA [Enterococcus faecalis TX4248] gi|307277701|ref|ZP_07558787.1| recombination factor protein RarA [Enterococcus faecalis TX0860] gi|307287876|ref|ZP_07567909.1| recombination factor protein RarA [Enterococcus faecalis TX0109] gi|307295905|ref|ZP_07575737.1| recombination factor protein RarA [Enterococcus faecalis TX0411] gi|312900874|ref|ZP_07760168.1| recombination factor protein RarA [Enterococcus faecalis TX0470] gi|312902758|ref|ZP_07761962.1| recombination factor protein RarA [Enterococcus faecalis TX0635] gi|312908306|ref|ZP_07767270.1| recombination factor protein RarA [Enterococcus faecalis DAPTO 512] gi|312910620|ref|ZP_07769462.1| recombination factor protein RarA [Enterococcus faecalis DAPTO 516] gi|227073250|gb|EEI11213.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis TX0104] gi|227175393|gb|EEI56365.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis HH22] gi|229309354|gb|EEN75341.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis TX1322] gi|255968355|gb|EET98977.1| AAA ATPase [Enterococcus faecalis T2] gi|256684159|gb|EEU23854.1| recombination factor protein RarA [Enterococcus faecalis T3] gi|256711952|gb|EEU26990.1| recombination factor protein RarA [Enterococcus faecalis T8] gi|256952029|gb|EEU68661.1| AAA ATPase [Enterococcus faecalis Merz96] gi|256995213|gb|EEU82515.1| AAA ATPase [Enterococcus faecalis D6] gi|256999072|gb|EEU85592.1| recombination factor protein rarA [Enterococcus faecalis CH188] gi|257161487|gb|EEU91447.1| recombination factor protein rarA [Enterococcus faecalis T11] gi|291078015|gb|EFE15379.1| ATPase, AAA family [Enterococcus faecalis R712] gi|291083199|gb|EFE20162.1| ATPase, AAA family [Enterococcus faecalis S613] gi|294453114|gb|EFG21529.1| recombination factor protein RarA [Enterococcus faecalis PC1.1] gi|306496236|gb|EFM65815.1| recombination factor protein RarA [Enterococcus faecalis TX0411] gi|306501021|gb|EFM70328.1| recombination factor protein RarA [Enterococcus faecalis TX0109] gi|306505580|gb|EFM74764.1| recombination factor protein RarA [Enterococcus faecalis TX0860] gi|306515524|gb|EFM84052.1| recombination factor protein RarA [Enterococcus faecalis TX4248] gi|310625720|gb|EFQ09003.1| recombination factor protein RarA [Enterococcus faecalis DAPTO 512] gi|310633812|gb|EFQ17095.1| recombination factor protein RarA [Enterococcus faecalis TX0635] gi|311289168|gb|EFQ67724.1| recombination factor protein RarA [Enterococcus faecalis DAPTO 516] gi|311291973|gb|EFQ70529.1| recombination factor protein RarA [Enterococcus faecalis TX0470] gi|315025984|gb|EFT37916.1| recombination factor protein RarA [Enterococcus faecalis TX2137] gi|315028905|gb|EFT40837.1| recombination factor protein RarA [Enterococcus faecalis TX4000] gi|315033296|gb|EFT45228.1| recombination factor protein RarA [Enterococcus faecalis TX0017] gi|315143409|gb|EFT87425.1| recombination factor protein RarA [Enterococcus faecalis TX2141] gi|315147642|gb|EFT91658.1| recombination factor protein RarA [Enterococcus faecalis TX4244] gi|315149228|gb|EFT93244.1| recombination factor protein RarA [Enterococcus faecalis TX0012] gi|315163672|gb|EFU07689.1| recombination factor protein RarA [Enterococcus faecalis TX1302] gi|315167496|gb|EFU11513.1| recombination factor protein RarA [Enterococcus faecalis TX1341] gi|315169388|gb|EFU13405.1| recombination factor protein RarA [Enterococcus faecalis TX1342] gi|315574550|gb|EFU86741.1| recombination factor protein RarA [Enterococcus faecalis TX0309B] gi|315576689|gb|EFU88880.1| recombination factor protein RarA [Enterococcus faecalis TX0630] gi|315581808|gb|EFU93999.1| recombination factor protein RarA [Enterococcus faecalis TX0309A] gi|327535494|gb|AEA94328.1| replication-associated recombination protein A [Enterococcus faecalis OG1RF] gi|329568738|gb|EGG50538.1| ATPase, AAA family [Enterococcus faecalis TX1467] Length = 425 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 71/195 (36%), Gaps = 36/195 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117 +IL GP G+GK+ +A+ + + + R N A + + +LL++I Sbjct: 42 MILYGPPGTGKTSIASAIAGSTNYAFRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIH 101 Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 LD D L H+ N ++M T + P + SR + ++ + Sbjct: 102 RLDKTKQDFLLPHLEN------GRIIMIGATTENPYITINPAIRSR---TQIFEVKPLTE 152 Query: 176 DFLEKVIVKMFAD--RQI-FIDKKLAAYIVQRMERSLV-FAEKLVDKMDNLALSRGM--- 228 +++ I + D R + L +Q + R+ ++ ++ L+ Sbjct: 153 TDIQQAIQEALTDSTRGLGDYPVHLEEKALQHLTRATNGDLRSALNGLE---LAVKSTPK 209 Query: 229 ------GITRSLAAE 237 IT + E Sbjct: 210 NEQGEIKITLPIIEE 224 >gi|224121826|ref|XP_002318682.1| predicted protein [Populus trichocarpa] gi|222859355|gb|EEE96902.1| predicted protein [Populus trichocarpa] Length = 799 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 64/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP GSGK+ +A ++++ + F SN+ K+ + + Sbjct: 232 PPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 291 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + ++++D + QL +++ + ++M A P S Sbjct: 292 APSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSID-- 349 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PD+ +V+ + + + + + Sbjct: 350 -PALR-RFGRFDREIDIGVPDEVGRLEVL--RIHTKNMKLAEDV 389 Score = 40.1 bits (93), Expect = 0.31, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 505 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 561 >gi|145544396|ref|XP_001457883.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124425701|emb|CAK90486.1| unnamed protein product [Paramecium tetraurelia] Length = 426 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 28/184 (15%), Positives = 68/184 (36%), Gaps = 39/184 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ +A + ++++T L + I ++ Sbjct: 205 PPKGVLMHGPPGTGKTMMARACAAQTKATFLKLAGPQLVQMFIGDGAKMVRDAFQLAQEK 264 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQ---YDSSLLMTARTFPVSW 151 ++++D + + ++N + D ++ A P Sbjct: 265 APAIIFIDELDAIGTKRYDSDKNGDREVQRTMLELLNQLDGFSPDDRIKVIAATNRPDIL 324 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI-VQRMERSL 209 L L S RL ++ LP+++ +++ R++ + K+ Y+ + R Sbjct: 325 DPAL--LRSGRLD--RKIEFPLPNEEARAQIL--KIHSRKMSVAKETVNYVEIARSTDEF 378 Query: 210 VFAE 213 A+ Sbjct: 379 NGAQ 382 >gi|54294651|ref|YP_127066.1| recombination factor protein RarA [Legionella pneumophila str. Lens] gi|53754483|emb|CAH15967.1| hypothetical protein lpl1728 [Legionella pneumophila str. Lens] Length = 434 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 36/182 (19%), Positives = 64/182 (35%), Gaps = 28/182 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125 +IL GP G GK+ +A + + + A I +E +D Q Sbjct: 49 MILWGPPGVGKTTIARLTAQAFDCEWIALSAVFSGVKDIRA----AIEKAQEYLIHDKQT 104 Query: 126 -LF----HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N Q +LL + A T S+ V P L SR A V + Sbjct: 105 ILFIDEIHRFNKAQQD--ALLPYTESGLITFIGATTENPSFEVN-PALLSR---AQVYVL 158 Query: 171 SLPDDDFLEKVIV--KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228 L + L+ + + K A + ++ +++ + L+++ L+ Sbjct: 159 KLLSEQELKLLFLRAKQRALSSLQFTEEAMDFLISCADGDARRLLNLLEQTKTACLTIKT 218 Query: 229 GI 230 + Sbjct: 219 AV 220 >gi|332975396|gb|EGK12290.1| AAA family ATPase [Desmospora sp. 8437] Length = 410 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 62/157 (39%), Gaps = 26/157 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G+GK+ LA + ++ +++ A I E + + D T L Sbjct: 55 ILLYGPPGTGKTTLAKVIANTTQARFEQLNAVIAGVAEIRRITQEAKEQLGMYDLR-TLL 113 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDL-CSRLKAATVVKISLP 173 F H N + + +L+ A T S+ V L SRL ++ Sbjct: 114 FIDEIHRFNKSQQDALLPFVEDGTIILIGATTENPSFEVNSALLSRSRL-----FQLHPL 168 Query: 174 DDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQ 203 ++ L+ + + D R + ++++ ++V+ Sbjct: 169 TEEELKSLARRALMDEERGLGNFRTQVEEEALDHMVR 205 >gi|327399820|ref|YP_004340689.1| IstB domain-containing protein ATP-binding protein [Hippea maritima DSM 10411] gi|327182449|gb|AEA34630.1| IstB domain protein ATP-binding protein [Hippea maritima DSM 10411] Length = 258 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 52/111 (46%), Gaps = 23/111 (20%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRF-------SNIAKSLDSI------------LIDT 107 ++L+GPSG+GK+ LA + R +++A +L++ +I++ Sbjct: 101 ILLIGPSGTGKTHLAIAIGYAAAQHRIKTKFITMADLAITLEAAETQNRLDSYIKKVINS 160 Query: 108 RKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 + +++++ N+ Q LF I+N ++ S+++T + W L Sbjct: 161 ARLLIIDEFGYFKLNEKQSNLLFQIVNKKYETG-SIIITTNLSFIRWKEVL 210 >gi|294793998|ref|ZP_06759135.1| ATPase, AAA family [Veillonella sp. 3_1_44] gi|294455568|gb|EFG23940.1| ATPase, AAA family [Veillonella sp. 3_1_44] Length = 433 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 59/157 (37%), Gaps = 30/157 (19%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 ++ GP G+GK+ LA I + S S + A + + T ++ED + Sbjct: 51 PSMLFYGPCGTGKTTLAGIIAKVSNSYFVNLNATNAGIGELRT----IIEDARKRVRSLQ 106 Query: 125 Q---LF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 Q LF H N + + +L+ A T + V P L SRL+ ++ Sbjct: 107 QRTILFLDEIHRFNKSQQDVLLPCVEDGTIILIGATTENPFFEVNRP-LLSRLR---LIT 162 Query: 170 ISLPDDDFLEKVIVKMFAD-------RQIFIDKKLAA 199 + + +++ + D R + + ++ Sbjct: 163 LEALTPKAIGQILRRAITDEEVGLGKRHLQVTDEVLE 199 >gi|87303473|ref|ZP_01086256.1| cell division protein [Synechococcus sp. WH 5701] gi|87281886|gb|EAQ73849.1| cell division protein [Synechococcus sp. WH 5701] Length = 603 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 80/223 (35%), Gaps = 49/223 (21%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110 R V+LVGP G+GK+ LA + ++ FS A + + Sbjct: 168 RGVLLVGPPGTGKTLLAKAIAGEAGVPFFSMAASEFVELFVGVGASRVRDLFKRAKEKAP 227 Query: 111 --VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGV 153 + ++++D + ND QL ++ Q +L+ A P V Sbjct: 228 CIIFIDEVDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEQNSGVILIAATNRPDVLDV 287 Query: 154 CLPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 L +R + +++ LPD E ++ R + L+ + + S Sbjct: 288 AL----TRPGRFDRQIQVDLPDRRGREAILAVHARSRPLDPSVSLSTWAARTPGFSGADL 343 Query: 213 EKLVDK------------MDNLALSRG-MGITRSLAAEVLKET 242 L+++ +D+ ALS IT LA L+++ Sbjct: 344 ANLLNEGAILTARRHRSSIDDQALSDALERITMGLAVAPLQDS 386 >gi|258411000|ref|ZP_05681280.1| recombination protein MgsA [Staphylococcus aureus A9763] gi|257840150|gb|EEV64614.1| recombination protein MgsA [Staphylococcus aureus A9763] Length = 391 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 73/201 (36%), Gaps = 40/201 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117 +I GP G GK+ +A S ++ + ++ ++ + + +LL++I Sbjct: 10 MIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIH 69 Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 L D L H+ N +L+ T + P + SR A + ++ Sbjct: 70 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 118 Query: 174 DDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 +D+ + + + + D Q ID+ Y + S ++ ++ LS Sbjct: 119 NDEDVRQALTRAIEDDENGLKTYQPKIDEDAMTYFSTQ---SQGDVRNALNALELAVLSA 175 Query: 227 G------MGITRSLAAEVLKE 241 +T A + L++ Sbjct: 176 DNDKDGYRHVTLQDAKDCLQK 196 >gi|261364752|ref|ZP_05977635.1| replication-associated recombination protein A [Neisseria mucosa ATCC 25996] gi|288567056|gb|EFC88616.1| replication-associated recombination protein A [Neisseria mucosa ATCC 25996] Length = 437 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 62/153 (40%), Gaps = 23/153 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G GK+ LA I + + A S + D R+ + +I L T L Sbjct: 50 MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIREAIDKAEIALQQGRATIL 107 Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 F H N Q D+ L L+T A T S+ V P L SR A V + Sbjct: 108 FVDEVHRFNKAQQ-DAFLPHVESGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQSL 162 Query: 174 DDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQ 203 D L+K+I K+ A R I+ +V Sbjct: 163 SSDDLKKLIAKVLALPEYRDFTIEADAQELLVN 195 >gi|194365713|ref|YP_002028323.1| recombination factor protein RarA [Stenotrophomonas maltophilia R551-3] gi|194348517|gb|ACF51640.1| AAA ATPase central domain protein [Stenotrophomonas maltophilia R551-3] Length = 453 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 43/200 (21%), Positives = 69/200 (34%), Gaps = 31/200 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD-FNDTQ 125 +IL GP G GK+ LA + ++ S + A S + + VL E T Sbjct: 62 MILWGPPGCGKTTLALLLAEYSDAEF---RAISAVLSGLPEVRQVLAEAAQRFAEGRRTV 118 Query: 126 LF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKIS 171 LF H N Q ++L T L SR + V++ Sbjct: 119 LFVDEVHRFNKAQQDAFLPHIERGTILFVGATTENPSFELNSA---LLSRCR-VHVLEGV 174 Query: 172 LPDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 P D + + + + DR I + +L I + + A L++ LA Sbjct: 175 SPTD--IVEALERALGDRERGLGEEGIEVAPELLLEIATAADGDVRRALTLLEIAAELAG 232 Query: 225 SRGMGITRSLAAEVLKETQQ 244 G IT +VL + + Sbjct: 233 GEGGRITPQTLTQVLADRTR 252 >gi|159476808|ref|XP_001696503.1| flagellar associated protein [Chlamydomonas reinhardtii] gi|158282728|gb|EDP08480.1| flagellar associated protein [Chlamydomonas reinhardtii] Length = 817 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 26/164 (15%), Positives = 62/164 (37%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP GSGK+ +A ++++ + SN+ K + Sbjct: 244 PPKGILLYGPPGSGKTLIARAVANETGAFFVVVNGPEIMSKLAGESESNLRKVFQEAEKN 303 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + ++++D + QL +++ + +++ A P S Sbjct: 304 APSIIFIDEVDSIAPKREKTQGEVERRIVSQLLTLMDGLKSRAHVIVIAATNRPNSID-- 361 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PD+ +V+ + + +D+ + Sbjct: 362 -PALR-RFGRFDREIDIGVPDETGRLEVM--RIHTKNMKLDEDV 401 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 517 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARG 575 >gi|147782460|emb|CAN61919.1| hypothetical protein VITISV_038729 [Vitis vinifera] Length = 802 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 26/164 (15%), Positives = 63/164 (38%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP GSGK+ +A ++++ + F SN+ K+ + + Sbjct: 234 PPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 293 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + ++++D + QL +++ + +++ A P S Sbjct: 294 APSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKTRAHVIVIGATNRPNSID-- 351 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PD+ +V+ + + + + Sbjct: 352 -PALR-RFGRFDREIDIGVPDEVGRLEVL--RIHTKNMKLSDDV 391 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 507 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 563 >gi|145596817|ref|YP_001161114.1| ATP-dependent metalloprotease FtsH [Salinispora tropica CNB-440] gi|145306154|gb|ABP56736.1| ATP-dependent metalloprotease FtsH [Salinispora tropica CNB-440] Length = 671 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 32/210 (15%), Positives = 69/210 (32%), Gaps = 43/210 (20%) Query: 67 VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110 V+L GP G+GK+ LA + ++ S + + + Sbjct: 210 VLLFGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKTNAPAI 269 Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 V +++ID + D + L + ++ +L+ A P L Sbjct: 270 VFVDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDTKGGVILIAATNRPDILDPAL 329 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 L+ + + PD + + ++ + D L + +R A Sbjct: 330 ------LRPGRFDRQIPVDAPDMEGRKAILRVHAKGKPFTPDVDL-DAVARRTP-GFSGA 381 Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKET 242 L + ++ AL R++ + L+E+ Sbjct: 382 -DLANVINEAALLTARRDKRAITDDALEES 410 >gi|257792296|ref|YP_003182902.1| AAA ATPase central domain-containing protein [Eggerthella lenta DSM 2243] gi|317490217|ref|ZP_07948705.1| ATPase [Eggerthella sp. 1_3_56FAA] gi|257476193|gb|ACV56513.1| AAA ATPase central domain protein [Eggerthella lenta DSM 2243] gi|316910711|gb|EFV32332.1| ATPase [Eggerthella sp. 1_3_56FAA] Length = 446 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 63/141 (44%), Gaps = 24/141 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST---------RFSNIAKSLDSI-----LIDTRKPVL 112 VIL GP+G+GK+ LA++ ++ +++T S++ + +D+ R + Sbjct: 56 VILFGPAGTGKTSLAHVIAETTKATFVEVSAIGGTVSDLRREIDAADKRLSAFGLRTILF 115 Query: 113 LEDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++I + L H + +L+ A T + V L SR + VV++ Sbjct: 116 VDEIHRFNRSQQDALLH----AVEDRVLVLVGATTENPFFEVNSA-LISR---SRVVELH 167 Query: 172 LPDDDFLEKVIVKMFAD-RQI 191 D+ + ++ + AD R + Sbjct: 168 GLSDEEIVSLVERALADERGL 188 >gi|225024225|ref|ZP_03713417.1| hypothetical protein EIKCOROL_01097 [Eikenella corrodens ATCC 23834] gi|224943250|gb|EEG24459.1| hypothetical protein EIKCOROL_01097 [Eikenella corrodens ATCC 23834] Length = 446 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 63/153 (41%), Gaps = 23/153 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G GK+ LA I + + A S + D R+ V +I L T L Sbjct: 51 MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIREAVNKAEIALQQGRATIL 108 Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 F H N Q D+ L L+T A T S+ V P L SR A V + Sbjct: 109 FVDEVHRFNKAQQ-DAFLPYVESGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQAL 163 Query: 174 DDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQ 203 D L ++ K+FA R +++ ++Q Sbjct: 164 SADELAQLTAKVFALPEYRSFSLEEDAQKLLIQ 196 >gi|257082202|ref|ZP_05576563.1| recombination factor protein RarA [Enterococcus faecalis E1Sol] gi|257416415|ref|ZP_05593409.1| recombination factor protein RarA [Enterococcus faecalis AR01/DG] gi|256990232|gb|EEU77534.1| recombination factor protein RarA [Enterococcus faecalis E1Sol] gi|257158243|gb|EEU88203.1| recombination factor protein RarA [Enterococcus faecalis ARO1/DG] Length = 425 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 71/195 (36%), Gaps = 36/195 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117 +IL GP G+GK+ +A+ + + + R N A + + +LL++I Sbjct: 42 MILYGPPGTGKTSIASAIAGSTNYAFRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIH 101 Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 LD D L H+ N ++M T + P + SR + ++ + Sbjct: 102 RLDKTKQDFLLPHLEN------GRIIMIGATTENPYITINPAIRSR---TQIFEVKPLTE 152 Query: 176 DFLEKVIVKMFAD--RQI-FIDKKLAAYIVQRMERSLV-FAEKLVDKMDNLALSRGM--- 228 +++ I + D R + L +Q + R+ ++ ++ L+ Sbjct: 153 TDIQQAIQEALTDSTRGLGDYPVHLEEKALQHLTRATNGDLRSALNGLE---LAVKSTPK 209 Query: 229 ------GITRSLAAE 237 IT + E Sbjct: 210 NEQGEIKITLPIIEE 224 >gi|225436524|ref|XP_002276976.1| PREDICTED: similar to Cell division cycle protein 48 homolog [Vitis vinifera] Length = 802 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 62/164 (37%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106 P + ++L GP GSGK+ +A ++++ + F N+ K+ + + Sbjct: 242 PPKGILLYGPPGSGKTLIAKAVANETGAFFFCINGPEIMSKLAGESEGNLRKAFEEAEKN 301 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 V +++ID + QL +++ + +++ A P S Sbjct: 302 APSIVFIDEIDSIAPKREKTHGQVEKRIVSQLLTLMDGLKSRAHVIVIGATNRPNSID-- 359 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PD+ +V+ + + + + Sbjct: 360 -PALR-RFGRFDREIDIGVPDEVGRLEVL--RIHTKNMKLSDDV 399 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 25/57 (43%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA +++ ++ S L + + + E D Sbjct: 515 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTKWFGESEANVREIFDKA 571 >gi|220915883|ref|YP_002491187.1| AAA ATPase central domain protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219953737|gb|ACL64121.1| AAA ATPase central domain protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 437 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 37/203 (18%), Positives = 72/203 (35%), Gaps = 41/203 (20%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFS--------------NIAKSLDSILIDTRKP 110 +IL GP G+GK+ LA I + ++ + A + R Sbjct: 52 PSLILWGPPGTGKTTLARIVAQRTGADFVPFSAVLGGVKEIREIVAAARDRRRMHRKRTI 111 Query: 111 VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 + +++I F + + L+ A T S+ V L SR V + Sbjct: 112 LFVDEIHRFTRAQQDAFLPH---VEDGTITLIGATTENPSFEVNAA-LLSR---CRVATL 164 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYI---------VQRMERSLVFAEKLVDKMDN 221 +D + ++ DR + + LA + + R+ S A K ++ ++ Sbjct: 165 RALTEDEVAALL-----DRAVAAPEGLAGAVALTPEARDTIARL--SYGDARKALNALEV 217 Query: 222 LA----LSRGMGITRSLAAEVLK 240 A L+ + ++ A E L+ Sbjct: 218 SAAAVRLAGRPAVEKADAEEALQ 240 >gi|158320754|ref|YP_001513261.1| Holliday junction DNA helicase B [Alkaliphilus oremlandii OhILAs] gi|167012665|sp|A8MHI3|RUVB_ALKOO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|158140953|gb|ABW19265.1| Holliday junction DNA helicase RuvB [Alkaliphilus oremlandii OhILAs] Length = 335 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 44/202 (21%), Positives = 80/202 (39%), Gaps = 29/202 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G GK+ L+NI +++ ++ L + D+L ++ Sbjct: 59 VLLYGPPGLGKTTLSNIIANEMNVNIKITSGPVIERAGDLAAILTNLSENDVLFIDEI-- 116 Query: 127 FHIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDL--------CSR--LKAAT--- 166 H IN + D +L + P + + L DL +R L Sbjct: 117 -HRINRTVEEVLYPAMEDYALDIIIGKGPSARSIRL-DLPKFTLIGATTRAGLLTGPLRD 174 Query: 167 ----VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 + K+ L D + L+++I + ++ID A I R + A +L+ ++ + Sbjct: 175 RFGVIAKLELYDTEQLKEIIRRSAYILNVYIDDNGAKEIASRSRGTPRIANRLLKRVRDF 234 Query: 223 ALSRG-MGITRSLAAEVLKETQ 243 A RG IT +A E L+ + Sbjct: 235 AQVRGDGRITLEIAQEALELLE 256 >gi|256073903|ref|XP_002573267.1| cell division control protein 48 aaa family protein [Schistosoma mansoni] gi|238658443|emb|CAZ29499.1| cell division control protein 48 aaa family protein (transitional endoplasmic reticulum atpase), putative [Schistosoma mansoni] Length = 649 Score = 45.9 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 66/164 (40%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A +++S S F SN+ K+ + + Sbjct: 80 PPRGILLYGPPGTGKTLVARAVANESGSFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 139 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + ++++D + QL +++ + Q ++M A P S Sbjct: 140 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRSHVIVMAATNRPNS---V 196 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + ++I +PD + ++ + R I + + + Sbjct: 197 DPALR-RFGRFDREIEIGIPD--SIGRLEILRIHTRNIRLAEDV 237 Score = 38.6 bits (89), Expect = 0.87, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 353 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDIFDKA 409 >gi|227535327|ref|ZP_03965376.1| crossover junction endodeoxyribonuclease [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187061|gb|EEI67128.1| crossover junction endodeoxyribonuclease [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 423 Score = 45.9 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 60/167 (35%), Gaps = 23/167 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117 +IL GP G+GK+ +A+ + ++ + R N A + + +LL++I Sbjct: 34 MILYGPPGTGKTSIASAIAGSTKYAFRILNAATDTKKDLQIVAEEAKMSGTVILLLDEIH 93 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 LD + + +L+ A T + P + SR + ++ D Sbjct: 94 RLDKTKQDFLLP---LLESGRIVLIGATTENPYMNIQ-PAIRSR---TQIFQVKPLTPDD 146 Query: 178 LEKVIVKMFA-------DRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 + I + A D Q+ + Y+ L A ++ Sbjct: 147 IASAIKRALADHKRGLGDYQVDLQPDALDYLTHATNGDLRSALNGLE 193 >gi|154509637|ref|ZP_02045279.1| hypothetical protein ACTODO_02170 [Actinomyces odontolyticus ATCC 17982] gi|153799271|gb|EDN81691.1| hypothetical protein ACTODO_02170 [Actinomyces odontolyticus ATCC 17982] Length = 563 Score = 45.9 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 69/183 (37%), Gaps = 27/183 (14%) Query: 54 RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL 113 +I++ + +I GP G GK+ LA + + + ++ A + S + + R+ + Sbjct: 47 SMIEADRT---PSMIFWGPPGVGKTTLARVIARHTHASFIDFSAVT--SGIKEIREVMKQ 101 Query: 114 EDIDLLDFNDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSR 161 D T +F H N + S +L+ A T S+ + L SR Sbjct: 102 ADAQASMGRRTIVFVDEIHRFNKAQQDAFLPFVEKGSIILIGATTENPSFEINNA-LLSR 160 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKL 215 V + ++ L ++ + D R++ I++KL I + A Sbjct: 161 ---CKVFVLHGLTEEDLVDLMRRALKDPRGFGGREVRIEEKLLRAIATFADGDARVALST 217 Query: 216 VDK 218 ++ Sbjct: 218 LEM 220 >gi|27544718|dbj|BAC55054.1| DnaA [Mycobacterium phlei] Length = 175 Score = 45.9 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 3/50 (6%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI 83 + D ++ ++ A + P+R + + G SG GK+ L + Sbjct: 108 RYTFDTFVIGASNRFAHAATLAIAEAPARAYNPLFIWGESGLGKTHLLHA 157 >gi|329765595|ref|ZP_08257171.1| AAA family ATPase, CDC48 subfamily protein [Candidatus Nitrosoarchaeum limnia SFB1] gi|329138033|gb|EGG42293.1| AAA family ATPase, CDC48 subfamily protein [Candidatus Nitrosoarchaeum limnia SFB1] Length = 713 Score = 45.9 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 63/163 (38%), Gaps = 33/163 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTR-- 108 P ++L GP G GK+ +A + + +S + FS L I + + Sbjct: 204 PHSGILLYGPPGCGKTLIAKVLASESEANMFSINGPEIMNKYYGETEAKLRDIFKEAKDN 263 Query: 109 --KPVLLEDIDLLD-FNDTQ-----------LFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + + L +++ ++ + +++ A P S Sbjct: 264 SPSIIFIDEIDAIAPKREEAYGDVEKRVVAQLLALMDGLNDRGNVIVLGATNRPESID-- 321 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L + +IS+P++D ++++ R + + + Sbjct: 322 -PALRRPGRFDREFEISVPNEDGRLEILI--IHTRGMPVADDV 361 Score = 38.6 bits (89), Expect = 0.81, Method: Composition-based stats. Identities = 7/31 (22%), Positives = 16/31 (51%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF 93 P + ++ GP G GK+ +A + ++ + Sbjct: 477 PPKGALIYGPPGCGKTLIARALATETGANMI 507 >gi|302333301|gb|ADL23494.1| DNA-directed DNA polymerase III gamma and tau subunits [Staphylococcus aureus subsp. aureus JKD6159] Length = 424 Score = 45.9 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 74/201 (36%), Gaps = 40/201 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117 +I GP G GK+ +A S ++ + ++ ++ + + +LL++I Sbjct: 43 MIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIH 102 Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 L D L H+ N +L+ T + P + SR A + ++ Sbjct: 103 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 151 Query: 174 DDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 +D+ + + + + D Q ID+ AY + S ++ ++ LS Sbjct: 152 NDEDVRQALTRAIEDEEKGLKTYQPKIDEDAMAYFSTQ---SQGDVRSALNALELAVLSA 208 Query: 227 G------MGITRSLAAEVLKE 241 +T A + L++ Sbjct: 209 DNDKDGYRHVTLQDAKDCLQK 229 >gi|255556934|ref|XP_002519500.1| Transitional endoplasmic reticulum ATPase, putative [Ricinus communis] gi|223541363|gb|EEF42914.1| Transitional endoplasmic reticulum ATPase, putative [Ricinus communis] Length = 806 Score = 45.9 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 64/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP GSGK+ +A ++++ + F SN+ K+ + + Sbjct: 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN 300 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + +++ A P S Sbjct: 301 APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSID-- 358 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PD+ +V+ + + + + + Sbjct: 359 -PALR-RFGRFDREIDIGVPDEVGRLEVL--RIHTKNMKLAEDV 398 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 514 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 570 >gi|148268108|ref|YP_001247051.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus JH9] gi|150394176|ref|YP_001316851.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus JH1] gi|257793701|ref|ZP_05642680.1| recombination protein MgsA [Staphylococcus aureus A9781] gi|258446870|ref|ZP_05695024.1| recombination protein MgsA [Staphylococcus aureus A6300] gi|258453603|ref|ZP_05701581.1| recombination protein MgsA [Staphylococcus aureus A5937] gi|282928261|ref|ZP_06335866.1| ATPase [Staphylococcus aureus A10102] gi|295406749|ref|ZP_06816554.1| ATPase [Staphylococcus aureus A8819] gi|297245669|ref|ZP_06929534.1| ATPase [Staphylococcus aureus A8796] gi|147741177|gb|ABQ49475.1| Recombination protein MgsA [Staphylococcus aureus subsp. aureus JH9] gi|149946628|gb|ABR52564.1| AAA ATPase central domain protein [Staphylococcus aureus subsp. aureus JH1] gi|257787673|gb|EEV26013.1| recombination protein MgsA [Staphylococcus aureus A9781] gi|257854445|gb|EEV77394.1| recombination protein MgsA [Staphylococcus aureus A6300] gi|257864334|gb|EEV87084.1| recombination protein MgsA [Staphylococcus aureus A5937] gi|282590068|gb|EFB95150.1| ATPase [Staphylococcus aureus A10102] gi|285817309|gb|ADC37796.1| ATPase related to helicase subunit of the Holliday junction resolvase [Staphylococcus aureus 04-02981] gi|294968496|gb|EFG44520.1| ATPase [Staphylococcus aureus A8819] gi|297177320|gb|EFH36572.1| ATPase [Staphylococcus aureus A8796] gi|312830014|emb|CBX34856.1| ATPase family associated with various cellular activities (AAA) family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129910|gb|EFT85900.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus CGS03] gi|329727592|gb|EGG64048.1| recombination factor protein RarA [Staphylococcus aureus subsp. aureus 21172] Length = 424 Score = 45.9 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 73/201 (36%), Gaps = 40/201 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117 +I GP G GK+ +A S ++ + ++ ++ + + +LL++I Sbjct: 43 MIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIH 102 Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 L D L H+ N +L+ T + P + SR A + ++ Sbjct: 103 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 151 Query: 174 DDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 +D+ + + + + D Q ID+ Y + S ++ ++ LS Sbjct: 152 NDEDVRQALTRAIEDDENGLKTYQPKIDEDAMTYFSTQ---SQGDVRNALNALELAVLSA 208 Query: 227 G------MGITRSLAAEVLKE 241 +T A + L++ Sbjct: 209 DNDKDGYRHVTLQDAKDCLQK 229 >gi|116754033|ref|YP_843151.1| AAA family ATPase, CDC48 subfamily protein [Methanosaeta thermophila PT] gi|116665484|gb|ABK14511.1| AAA family ATPase, CDC48 subfamily [Methanosaeta thermophila PT] Length = 756 Score = 45.9 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 22/168 (13%), Positives = 62/168 (36%), Gaps = 43/168 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106 P + ++L GP G+GK+ LA +++S + S + + + Sbjct: 240 PPKGILLYGPPGTGKTMLAKAVANESDAYFISVNGPEIMSKYYGESEKALRDIFEEAEKN 299 Query: 107 TRKPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + L+++D + QL +++ + + + L++ + P + + Sbjct: 300 APAIIFLDELDSIAPKRGEVTGEVERRVVAQLLSLMDGLKERKNVLVIGSTNRPEALDIA 359 Query: 155 LP-----DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L D +++ +PD + +++ R + + + + Sbjct: 360 LRRPGRFD--------REIELGVPDFEGRKEIFQ--IHTRGMPLAEDV 397 Score = 36.7 bits (84), Expect = 2.9, Method: Composition-based stats. Identities = 10/34 (29%), Positives = 20/34 (58%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 ++L GP G+GK+ LA +++S + + +L Sbjct: 517 ILLYGPPGTGKTMLAKAVANESDANFITAKGSAL 550 >gi|152205934|dbj|BAF73714.1| valosin containing protein [Haemaphysalis longicornis] Length = 808 Score = 45.9 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 70/201 (34%), Gaps = 44/201 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++D + QL +++ + Q ++M A P S Sbjct: 297 APSIIFFDELDAIAPKREKTHGEVDRRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDAA 356 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIF--IDKKLAAYIVQRM---ERS 208 L R + V I +PD +++ + ++ +D A R+ R Sbjct: 357 LR----RFGRFDREVDIGIPDATGRLEILRIHTKNMKLAESVDLDKIAAETHRLRVGPRD 412 Query: 209 LVFAEKLVDKMDNLALSRGMG 229 L AL + Sbjct: 413 LAALCS------EAALQQIRE 427 Score = 39.7 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 512 PSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKA 568 >gi|84394177|ref|ZP_00992908.1| hypothetical protein V12B01_03078 [Vibrio splendidus 12B01] gi|84375197|gb|EAP92113.1| hypothetical protein V12B01_03078 [Vibrio splendidus 12B01] Length = 449 Score = 45.9 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 44/202 (21%), Positives = 70/202 (34%), Gaps = 44/202 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G+GK+ LA + ++ + + R S + + I I K + T Sbjct: 54 MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKDIRIAIEKA----RENKQAGRRT 109 Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N Q D ++ T L SR A V K+ Sbjct: 110 ILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKL 163 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL------ 224 + D + VI + D+Q + A + ++R +LV+ ++L Sbjct: 164 TSLHTDDISLVIRQAIEDKQRGLGDVTADFADNVLDR----LAELVNGDARMSLNYLELL 219 Query: 225 --------SRGMGITRSLAAEV 238 IT L AEV Sbjct: 220 YDMAEDNDKGEKAITLQLLAEV 241 >gi|126174375|ref|YP_001050524.1| recombination factor protein RarA [Shewanella baltica OS155] gi|125997580|gb|ABN61655.1| Recombination protein MgsA [Shewanella baltica OS155] Length = 443 Score = 45.9 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 39/196 (19%), Positives = 72/196 (36%), Gaps = 35/196 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLD---F 121 ++L GP G+GK+ LA + + S + R S + + I +E + Sbjct: 52 MMLWGPPGTGKTTLAELIAHYSNAHVERISAVTSGVKDIR------AAIEQAKAVAESRG 105 Query: 122 NDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 T LF H N + + + + A T S+ + L SR A V Sbjct: 106 QRTLLFVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEINNA-LLSR---ARVYL 161 Query: 170 ISLPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 I D + ++ + +D RQ + + + Q + A L++ M ++ Sbjct: 162 IKRLSHDEIAHIVTQALSDTERGLGQRQFVMPTDVLTTLAQLCDGDARKALNLIELMGDM 221 Query: 223 ALSRGMGITRSLAAEV 238 L+ G T + +V Sbjct: 222 -LADGGTFTTEMLIQV 236 >gi|315426144|dbj|BAJ47789.1| AAA family ATPase [Candidatus Caldiarchaeum subterraneum] Length = 726 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 33/200 (16%), Positives = 62/200 (31%), Gaps = 42/200 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R V+L GP G GK+ LA + +S + I + Sbjct: 487 PPRGVLLYGPPGCGKTLLAKAVATESEANFITIKGPEIFSKWVGESEKAIREIFRKARQA 546 Query: 107 TRKPVLLEDIDLLDFN--------------DTQLFHIINSIHQYDSSLLMTARTFPVSWG 152 + ++I+ + +QL I+ I + + +++ A P Sbjct: 547 APAVIFFDEIEAIAPRKDLAEDSSGVTNRVASQLLAEIDGIEELNDIVVIGATNRPDMLD 606 Query: 153 VCLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRME-RSL 209 L L R + I PD+ ++ R++ + + + R E S Sbjct: 607 PAL--LRPGRFDRLLL--IPPPDEKARAEIF--YIYTRKMPLADDVNIEVLASRCEGYSG 660 Query: 210 VFAEKLVDKMDNLALSRGMG 229 E + AL+ Sbjct: 661 ADIESVCK---EAALAALRR 677 Score = 42.1 bits (98), Expect = 0.067, Method: Composition-based stats. Identities = 30/196 (15%), Positives = 66/196 (33%), Gaps = 34/196 (17%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + V+L GP G GK+ LA + ++ + + + + + Sbjct: 214 PPKGVLLYGPPGCGKTLLAKAVATEAEANFILINGPEIMNKYYGETEARLREIFRKAEEE 273 Query: 107 TRKPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + S +++ A P + Sbjct: 274 APSIIFIDEIDAIAPKRSEVTGEVEKRVVAQLLALMDGLEGRGSVIVIGATNRPNALD-- 331 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 P L + ++I +PD +++ R + + K + + M R A Sbjct: 332 -PALRRPGRFDREIEIGIPDKKGRVEILT--IHTRGMPLAKDVQVDKLGEMTRGYTGA-D 387 Query: 215 LVDKMDNLALSRGMGI 230 L A+ I Sbjct: 388 LAALCREAAMKAIRRI 403 >gi|255729088|ref|XP_002549469.1| 26S protease regulatory subunit 6A [Candida tropicalis MYA-3404] gi|240132538|gb|EER32095.1| 26S protease regulatory subunit 6A [Candida tropicalis MYA-3404] Length = 428 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 63/178 (35%), Gaps = 40/178 (22%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + ++ GP G+GK+ LA + +S +T A L + I ++ Sbjct: 207 PPKGALMYGPPGTGKTLLARACAAQSGATFLKLAAPQLVQMFIGDGAKLVRDAFALAKEK 266 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151 ++++D + + ++N + D ++ A + Sbjct: 267 APTIIFIDELDAIGTKRFDSDKSGDREVQRTMLELLNQLDGFGSDDRVKVLAATNRVDTL 326 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 L L S RL ++ LP ++ E V+ R++ D + + + RS Sbjct: 327 DPAL--LRSGRLD--RKIEFPLPSEEARESVLKIHA--RKLHCDNNSVNW--RELARS 376 >gi|145542851|ref|XP_001457112.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124424927|emb|CAK89715.1| unnamed protein product [Paramecium tetraurelia] Length = 419 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 28/184 (15%), Positives = 68/184 (36%), Gaps = 39/184 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ +A + ++++T L + I ++ Sbjct: 205 PPKGVLMHGPPGTGKTMMARACAAQTKATFLKLAGPQLVQMFIGDGAKMVRDAFQLAQEK 264 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQ---YDSSLLMTARTFPVSW 151 ++++D + + ++N + D ++ A P Sbjct: 265 APAIIFIDELDAIGTKRYDSDKNGDREVQRTMLELLNQLDGFSPDDRIKVIAATNRPDIL 324 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI-VQRMERSL 209 L L S RL ++ LP+++ +++ R++ + K+ Y+ + R Sbjct: 325 DPAL--LRSGRLD--RKIEFPLPNEEARAQIL--KIHSRKMSVAKETVNYVEIARSTDEF 378 Query: 210 VFAE 213 A+ Sbjct: 379 NGAQ 382 >gi|3122633|sp|O42586|PR6AB_XENLA RecName: Full=26S protease regulatory subunit 6A-B; AltName: Full=26S proteasome AAA-ATPase subunit RPT5-B; AltName: Full=Proteasome 26S subunit ATPase 3-B; AltName: Full=Tat-binding protein 10; Short=TBP-10 gi|2648045|emb|CAA71486.1| TBP10 protein [Xenopus laevis] Length = 404 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 73/201 (36%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 184 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFSLAKEK 243 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + + ++N + Q + + ++ A Sbjct: 244 APSIIFIDELDAIGNKRFDSEKAGDREVQRTMLELLNQLDGFQPTTQVKVIAATNRVDIL 303 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ +P+++ +++ R++ + + + R Sbjct: 304 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 357 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ ++ G T Sbjct: 358 GAQCKAVCVEAGIIALRRGAT 378 >gi|297588494|ref|ZP_06947137.1| crossover junction ATP-dependent DNA helicase RuvB [Finegoldia magna ATCC 53516] gi|297573867|gb|EFH92588.1| crossover junction ATP-dependent DNA helicase RuvB [Finegoldia magna ATCC 53516] Length = 335 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 33/210 (15%), Positives = 71/210 (33%), Gaps = 53/210 (25%) Query: 43 LLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 + + + P +L GP G GK+ LA+I +++ +++ Sbjct: 45 FIEAAKNR----------NEPLDHALLYGPPGLGKTTLAHIIANEMGVNLRVTSGPAIEK 94 Query: 103 ILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ-------YDSSLLMTARTFPVSWGVCL 155 L+ D+L ++ H IN + D +L + P + + + Sbjct: 95 PSDLASILTNLQKDDVLFIDEI---HRINRSVEEILYPAMEDYALDIIVGKGPSARSLRI 151 Query: 156 PDL----------CS-------RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK-- 196 DL S R + ++ + L D + L+K++ + I ID++ Sbjct: 152 -DLEKFTLIGATTRSGQLTGPLRDRFGVLLNLELYDIESLKKIVTRSAGVLGIGIDEEGA 210 Query: 197 ------------LAAYIVQRMERSLVFAEK 214 +A +++R+ R Sbjct: 211 MEIARRSRGTPRIANRLLKRV-RDYAEVRA 239 >gi|156937725|ref|YP_001435521.1| ATPase [Ignicoccus hospitalis KIN4/I] gi|156566709|gb|ABU82114.1| AAA ATPase, central domain protein [Ignicoccus hospitalis KIN4/I] Length = 516 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 81/235 (34%), Gaps = 56/235 (23%) Query: 31 SFPRCLGISRDDLLVHS-AIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR 89 FP LG L++ + A + ++LVGP G GK+ L + Sbjct: 258 DFPEELGEELRTLVIDPITNKMAFA---------PKGMLLVGPPGVGKTILVEAVAGGLG 308 Query: 90 S-----------------------TRFSNIAKSLDSILIDTRKPVLLED----IDLLDFN 122 F+ ++K D +++ L D + + Sbjct: 309 RKLLELEPGMYRSMWYGQTEKILKEIFNAVSKRKDEVVVLIDDAEFLMDRGLAVHEGYVS 368 Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCL--P---DLCSRLKAATVVKISLPDDDF 177 + +F + + + L+ P L P DL V + PD +F Sbjct: 369 EMNVF--LKLLQNRERPLIAMTTNHPQLLDQALVRPGRVDLA--------VIVGYPDKEF 418 Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM-GIT 231 K++ + ++ +D+ L +V R+ R AE +D + +A ++G IT Sbjct: 419 RRKIVERAAKRYELKMDEHLIEKVV-RVTRWFSNAE--IDSLIRMAAAKGKGKIT 470 >gi|323495033|ref|ZP_08100122.1| recombination factor protein RarA [Vibrio brasiliensis LMG 20546] gi|323310690|gb|EGA63865.1| recombination factor protein RarA [Vibrio brasiliensis LMG 20546] Length = 428 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 40/198 (20%), Positives = 78/198 (39%), Gaps = 36/198 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS-------------TRFSNIAKSLDSILIDTRKPVLL 113 +IL GP G+GK+ LA + ++ + + + I K+ + L R + + Sbjct: 34 MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAREYKLAGRRTILFV 93 Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++ + + F HI + + + A T S+ + L SR A V K++ Sbjct: 94 DEVHRFNKSQQDAFLPHI-----EDGTVTFIGATTENPSFELNNA-LLSR---ARVYKLT 144 Query: 172 LPDDDFLEKVIVKMFAD--RQI-FIDKKLAAYIVQRMER--------SLVFAEKLVDKMD 220 + + + + D R + ++ + ++ R+ SL + E L D Sbjct: 145 SLAKEDIRLALEQAINDKERGLGAVEVEFVDNVLDRLSELVNGDARMSLNYLELLYDMAQ 204 Query: 221 NLALSRGMGITRSLAAEV 238 A IT +L AEV Sbjct: 205 EDA-QGKKQITLALLAEV 221 >gi|317126379|ref|YP_004100491.1| SARP family transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315590467|gb|ADU49764.1| transcriptional regulator, SARP family [Intrasporangium calvum DSM 43043] Length = 1399 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 66/175 (37%), Gaps = 32/175 (18%) Query: 50 EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIA---------KSL 100 E A+R +D + V+ +VGPSGSGKS L + +++ +L Sbjct: 279 EAALRRLDQ-----TGVLAVVGPSGSGKSSLVRAGVAAALERDGRDVSVLTPGRHPLAAL 333 Query: 101 DSILIDTRKPVLLEDIDLL------DFNDTQLFH-IINSIHQYDSSLLMTARTFPVSWGV 153 D++ ++++ + + + + F ++ + L+++ R Sbjct: 334 DAVRPQAADVLVVDQCEEVLGLPEESGDRSDFFERLVTFAARPGRQLVISLRAD------ 387 Query: 154 CLPDLC-----SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203 L DL +RL + + + L + I A + I+ L +V+ Sbjct: 388 RLGDLSIHTDFARLVEQGLYLLGPLREPDLRRAIESPAAQAGLRIEPGLVDLLVR 442 >gi|269837626|ref|YP_003319854.1| IstB domain-containing protein ATP-binding protein [Sphaerobacter thermophilus DSM 20745] gi|269786889|gb|ACZ39032.1| IstB domain protein ATP-binding protein [Sphaerobacter thermophilus DSM 20745] Length = 241 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 50/155 (32%), Gaps = 31/155 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSD--------KSRSTRFSNIAKSLDSILIDTRKP---- 110 P + L+G G GK+ LA + ++ ++ L + + Sbjct: 90 PDGWLFLLGGYGCGKTHLAAAVAHYVIAHQRMRALFLVVPDLLDHLRATFAPDQGATYDA 149 Query: 111 ----------VLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 ++L+D+ + +LF IIN + ++T+ P Sbjct: 150 RFNAIRTIDLLVLDDLGTEHTTPWAREKLFQIINFRYNERRPTIITSNRNFDELD---PR 206 Query: 158 LCSRL---KAATVVKISLPDDDFLEKVIVKMFADR 189 + SRL + V I D ++ F R Sbjct: 207 VASRLSDPRICHAVLIPAGDYRVRRASALRRFPGR 241 >gi|255065859|ref|ZP_05317714.1| replication-associated recombination protein A [Neisseria sicca ATCC 29256] gi|255049770|gb|EET45234.1| replication-associated recombination protein A [Neisseria sicca ATCC 29256] Length = 437 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 62/153 (40%), Gaps = 23/153 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G GK+ LA I + + A S + D R+ + +I L T L Sbjct: 50 MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIREAIDKAEIALQQGRATIL 107 Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 F H N Q D+ L L+T A T S+ V P L SR A V + Sbjct: 108 FVDEVHRFNKAQQ-DAFLPHVESGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQSL 162 Query: 174 DDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQ 203 D L+K+I K+ A R I+ +V Sbjct: 163 SSDDLKKLIAKVLALPEYRDFTIEADAQELLVN 195 >gi|153814369|ref|ZP_01967037.1| hypothetical protein RUMTOR_00579 [Ruminococcus torques ATCC 27756] gi|317500083|ref|ZP_07958318.1| replication-associated recombination protein A [Lachnospiraceae bacterium 8_1_57FAA] gi|331087693|ref|ZP_08336619.1| hypothetical protein HMPREF1025_00202 [Lachnospiraceae bacterium 3_1_46FAA] gi|145848765|gb|EDK25683.1| hypothetical protein RUMTOR_00579 [Ruminococcus torques ATCC 27756] gi|316898568|gb|EFV20604.1| replication-associated recombination protein A [Lachnospiraceae bacterium 8_1_57FAA] gi|330409674|gb|EGG89110.1| hypothetical protein HMPREF1025_00202 [Lachnospiraceae bacterium 3_1_46FAA] Length = 438 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 78/205 (38%), Gaps = 43/205 (20%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS-----NIAKSLDSILIDTRKPVLLEDIDLLDF 121 VI GP G+GK+ LA + ++ + + K ++ ++ + + D+ + Sbjct: 55 VIFYGPPGTGKTTLAKVIANTTSAEFKQINATVAGKKDMEEVVKEAK------DMQGMYG 108 Query: 122 NDTQLF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 T LF H N + + +L+ A T + V L SR + V + Sbjct: 109 KRTILFIDEIHRFNKGQQDYLLPFVEDGTVILIGATTENPYFEVNGA-LLSR---SAVFE 164 Query: 170 ISLPDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 + + + ++ ++ + D I+++ ++ + S A ++ ++ Sbjct: 165 LKPLEKEDIKILLRRAVEDEEKGLGSFGAKIEEEALEFLA---DMSGGDARSALNAIELG 221 Query: 223 ALSRGMG------ITRSLAAEVLKE 241 L+ IT A+E +++ Sbjct: 222 VLTTERSEDGIIHITLETASECIQK 246 >gi|124027197|ref|YP_001012517.1| ATPases of AAA+ class, SpoVK, putative cell division [Hyperthermus butylicus DSM 5456] gi|123977891|gb|ABM80172.1| ATPases of AAA+ class, SpoVK, putative cell division [Hyperthermus butylicus DSM 5456] Length = 737 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 59/163 (36%), Gaps = 33/163 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109 P + ++L GP G GK+ LA +++ + + + L I + K Sbjct: 224 PPKGILLYGPPGVGKTLLAKALANEIGAYFIAINGPEIMSKYYGESEQRLREIFEEAEKN 283 Query: 110 ---PVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + + +++ A P + Sbjct: 284 APSIIFIDEIDAIAPRREEVTGEVEKRVVAQLLTLMDGLKERGRVIVIGATNRPDAID-- 341 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L + ++I PD ++++ R + + + Sbjct: 342 -PALRRPGRFDREIEIRPPDKRARKEILQVHV--RNMPLADDV 381 Score = 39.4 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 19/32 (59%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + ++L GP G+GK+ LA + +S + + Sbjct: 498 PPKGILLFGPPGTGKTLLAKAAATESGANFIA 529 >gi|269798266|ref|YP_003312166.1| ATPase AAA [Veillonella parvula DSM 2008] gi|282850504|ref|ZP_06259883.1| recombination factor protein RarA [Veillonella parvula ATCC 17745] gi|269094895|gb|ACZ24886.1| AAA ATPase central domain protein [Veillonella parvula DSM 2008] gi|282579997|gb|EFB85401.1| recombination factor protein RarA [Veillonella parvula ATCC 17745] Length = 433 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 59/157 (37%), Gaps = 30/157 (19%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 ++ GP G+GK+ LA I + S S + A + + T ++ED + Sbjct: 51 PSMLFYGPCGTGKTTLAGIIAKVSNSHFVNLNATNAGIGELRT----IIEDARKRVRSLQ 106 Query: 125 Q---LF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 Q LF H N + + +L+ A T + V P L SRL+ ++ Sbjct: 107 QRTILFLDEIHRFNKSQQDVLLPCVEDGTIILIGATTENPFFEVNRP-LLSRLR---LIT 162 Query: 170 ISLPDDDFLEKVIVKMFAD-------RQIFIDKKLAA 199 + + +++ + D R + + ++ Sbjct: 163 LEALTPKAIGQILRRAITDEAVGLGKRHLQVTDEVLE 199 >gi|150403099|ref|YP_001330393.1| AAA family ATPase [Methanococcus maripaludis C7] gi|150034129|gb|ABR66242.1| AAA family ATPase, CDC48 subfamily [Methanococcus maripaludis C7] Length = 800 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 74/191 (38%), Gaps = 38/191 (19%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + V+L GP G+GK+ LA ++++ + + N+ K + + Sbjct: 210 PPKGVLLAGPPGTGKTLLAKAVANEAGANFYTINGPELMSKYVGETEENLRKIFEEAEEN 269 Query: 107 TRKPVLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + ++ QL +++ + +++ A P S + Sbjct: 270 SPSIIFIDEIDAVAPKRDEASGEVERRMVAQLLTLLDGLEGRGQVVILAATNRPDSIDMA 329 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID---KKLAAY---IVQRMERS 208 L RL I +PD +++ + + D ++ ++ +RS Sbjct: 330 LRR-PGRLDRELT--IGIPDRHARNEILQIHTRNMPLQPDYEKDEVIPLLNELIGEFDRS 386 Query: 209 -LVFAEKLVDK 218 + KLV+K Sbjct: 387 KIENIVKLVEK 397 Score = 39.0 bits (90), Expect = 0.61, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 20/32 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + V+L GP G+GK+ LA +++S + S Sbjct: 556 PPKGVLLFGPPGTGKTLLAKAVANESEANFIS 587 >gi|308389351|gb|ADO31671.1| recombination factor protein RarA [Neisseria meningitidis alpha710] gi|325130297|gb|EGC53064.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis OX99.30304] gi|325136258|gb|EGC58866.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis M0579] gi|325202050|gb|ADY97504.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis M01-240149] gi|325208196|gb|ADZ03648.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis NZ-05/33] Length = 436 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 56/134 (41%), Gaps = 20/134 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G GK+ LA I + + A S + D R + +I L T L Sbjct: 50 MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIRGAIDKAEIALQQGRATIL 107 Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 F H N Q D+ L L+T A T S+ V P L SR A V + Sbjct: 108 FVDEVHRFNKAQQ-DAFLPYVENGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQSL 162 Query: 174 DDDFLEKVIVKMFA 187 D L+K+I K+ A Sbjct: 163 SSDDLKKLIAKVLA 176 >gi|284047303|ref|YP_003397643.1| ATPase AAA [Conexibacter woesei DSM 14684] gi|283951524|gb|ADB54268.1| AAA ATPase central domain protein [Conexibacter woesei DSM 14684] Length = 427 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 35/203 (17%), Positives = 68/203 (33%), Gaps = 34/203 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID--LLDFNDT 124 +IL GP G+GK+ LA I + + + A + + ++E + T Sbjct: 58 MILYGPPGAGKTTLARIVASSADAVFEELSAVQVGRPEVRA----VIERAEQRRRMGRQT 113 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 F H N + L+ A T S+ V L SR A + + Sbjct: 114 IFFLDEIHRFNKAQQDALLPAVEDGRLTLIGATTENPSYEVNGA-LLSR---ARLYALRE 169 Query: 173 PDDDFLEKVIVKMFADRQ---IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA-LSRGM 228 +D + ++ + R+ + +D + RS A + ++ + Sbjct: 170 LTEDHVLTLLRRAVERRECGLVSVDDDALELLAA---RSGGDARTALAALELACDTAPES 226 Query: 229 GITR-----SLAAEVLKETQQCD 246 +T +L +L + D Sbjct: 227 KVTLEHAEDALQRRILHYDRASD 249 >gi|237836221|ref|XP_002367408.1| ATPase, AAA family domain containing protein [Toxoplasma gondii ME49] gi|211965072|gb|EEB00268.1| ATPase, AAA family domain containing protein [Toxoplasma gondii ME49] gi|221505904|gb|EEE31539.1| werner helicase interacting protein, putative [Toxoplasma gondii VEG] Length = 1101 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 40/240 (16%), Positives = 76/240 (31%), Gaps = 43/240 (17%) Query: 12 VPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLL-----VHSAIEQAVRLIDSWPSWPSRV 66 +P ++ D + + + S ++ + + L+++ Sbjct: 587 LPADRRGDPGRRDAVSVPLAERLRPA-SLEEYVGQRGCIQGGRGSIRELLEA---GHLPS 642 Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125 +IL GP G GK+ I RS N A SL + V D+ Sbjct: 643 LILWGPPGCGKT---TIALLAGRSVGKKNSALSLPPPVFKKMSAVTCGVNDVRKVVQEAL 699 Query: 126 -----------LF----HIINSIHQY--------DSSLLMTARTFPVSWGVCLPDLCSRL 162 LF H N Q + L+ A T S+ V L SR Sbjct: 700 TLRATTKQKTVLFLDEIHRFNKAQQDALLPHVETGTITLIGATTENPSFEVNRA-LLSR- 757 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 V K+ ++ L ++ + + + I + I + + A + ++ ++N Sbjct: 758 --CRVCKLEPLTEEDLTTILQRAAKEENVTITEAAVRVICRLAD---GDARRALNMLENA 812 >gi|152978774|ref|YP_001344403.1| recombination factor protein RarA [Actinobacillus succinogenes 130Z] gi|150840497|gb|ABR74468.1| AAA ATPase central domain protein [Actinobacillus succinogenes 130Z] Length = 447 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 40/202 (19%), Positives = 80/202 (39%), Gaps = 33/202 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST-------------RFSNIAKSLDSILIDTRKPVLL 113 +IL GP G+GK+ LA I + + + I ++ + L D + + + Sbjct: 53 MILWGPPGTGKTTLAEIIAYRINAEVERLSAVTSGVKDIREAIERAKRNRLADRQTILFV 112 Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++ + + F HI + + + + A T S+ + L SR + V + Sbjct: 113 DEVHRFNKSQQDAFLPHI-----EDGTIIFIGATTENPSFELNNA-LLSRTR---VYILK 163 Query: 172 LPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA- 223 +++V+ + AD R + + L + + + A ++ M ++A Sbjct: 164 SLTTADVQRVLQQAVADEERGLGKARLNLQANLLHLLAEYVNGDARLALNCLELMADMAE 223 Query: 224 -LSRGMGITRSLAAEVLKETQQ 244 G I R+L EVL E Q Sbjct: 224 EDENGKKIDRTLLTEVLGERQA 245 >gi|74007559|ref|XP_849002.1| PREDICTED: similar to 26S protease regulatory subunit 6A (TAT-binding protein 1) (TBP-1) (Spermatogenic cell/sperm-associated TAT-binding protein homolog SATA) [Canis familiaris] Length = 403 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 73/201 (36%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 183 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 242 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + ++N + Q ++ + ++ A Sbjct: 243 APSIIFIDELDATGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 302 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ +P+++ +++ R++ + + + R Sbjct: 303 DPAL--LRSGRLD--QKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCMDDFN 356 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ ++ G T Sbjct: 357 GAQCKAVCVEAGMIALRRGTT 377 >gi|51244885|ref|YP_064769.1| recombination factor protein RarA [Desulfotalea psychrophila LSv54] gi|50875922|emb|CAG35762.1| probable uncharacterized ATPase related to the helicase subunit of the Holliday junction resolvase [Desulfotalea psychrophila LSv54] Length = 440 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 70/173 (40%), Gaps = 26/173 (15%) Query: 67 VILVGPSGSGK--------SCLANIWSDKSR-----STRFSNIAKSLDSILIDTRKPVL- 112 IL GP G+GK + +I++ S + + + ++ + + +K ++ Sbjct: 56 FILWGPPGTGKTTIARFIETHTKHIFASLSAVLTKIAEVKALMEQARFRLQAEGQKTLVF 115 Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +++I + + F + + +L+ A T S+ V L SR V + Sbjct: 116 VDEIHRFNKSQQDAFLPY---VESGAIVLLGATTENPSFEVISA-LLSR---CHVFTLQP 168 Query: 173 PDDDFLEKVIVKMFAD--RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + ++ ++ + + R+I I + + E+S K ++ ++ +A Sbjct: 169 LSIEDIKSIMTRALKEIPREIHISDQALTMLA---EKSGGDGRKALNHLETVA 218 >gi|332796313|ref|YP_004457813.1| AAA ATPase [Acidianus hospitalis W1] gi|332694048|gb|AEE93515.1| AAA family ATPase, CDC48 subfamily [Acidianus hospitalis W1] Length = 767 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 78/201 (38%), Gaps = 49/201 (24%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTRKP 110 P + V+L GP G+GK+ LA ++++ + + + L I D +K Sbjct: 223 PPKGVLLYGPPGTGKTLLAKAVANETDAYFTSINGPEIMSKFYGESEQRLREIFEDAKKH 282 Query: 111 ----VLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFP------ 148 + +++ID + ++ QL +++ + + +++ A P Sbjct: 283 APAIIFIDEIDAIAPKRDEVIGEVERRVVAQLLTLMDGLESRGNVIVIAATNRPNAVDPA 342 Query: 149 --------VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV-IVKMFADRQIFIDKKLAA 199 + LPD RL+ +++I + + V + K+ + LAA Sbjct: 343 LRRPGRFDREIEIPLPDKQGRLE---ILQIHTRNMPLAKDVDLEKLAEVTHGYTGADLAA 399 Query: 200 YIVQRMERSLVFAEKLVDKMD 220 + R E ++ + + K+D Sbjct: 400 --LVR-EAAMNALRRYLPKID 417 Score = 37.8 bits (87), Expect = 1.5, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 19/32 (59%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + ++L GP G+GK+ LA + +S + + Sbjct: 496 PPKGILLFGPPGTGKTMLAKAVATESGANFIA 527 >gi|312384050|gb|EFR28872.1| hypothetical protein AND_02653 [Anopheles darlingi] Length = 580 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 65/175 (37%), Gaps = 32/175 (18%) Query: 41 DDLL----VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK----SRSTR 92 +D + V +L D S +IL GP G GK+ LA+I +++ S S R Sbjct: 168 EDYVGQEQVMGRNAILRKLFD---SGSIPSMILWGPPGCGKTTLAHIIANRCKQNSNSMR 224 Query: 93 FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLF----HIINSIH--------QYDSSL 140 F +++ + + D ++ V + + T LF H N + + + Sbjct: 225 FVSLSATSAGVN-DVKEAVKVAKNESRFKRRTILFLDEIHRFNKLQQDIFLPHVESGTIT 283 Query: 141 LM--TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193 L+ T S L SR V+ + + + ++V+ + + Sbjct: 284 LIGATTENPSFSLNSA---LLSR---CRVIVLEKHSVESMMSILVRALPQYRAKL 332 >gi|268319502|ref|YP_003293158.1| recombination factor protein RarA [Lactobacillus johnsonii FI9785] gi|262397877|emb|CAX66891.1| recombination factor protein RarA [Lactobacillus johnsonii FI9785] Length = 420 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 67/170 (39%), Gaps = 29/170 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID---------TRKPVLLEDID 117 ++L GP G+GK+ LA I + + + S D+ +L+++I Sbjct: 44 LLLWGPPGTGKTSLAQIIAREYD-YPLATFNASTDNKAKLMQIINTYPYQSFVLLIDEIH 102 Query: 118 L--LDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 D L ++ N LL+ A T + P + SR + + D Sbjct: 103 RMTTTLQDYLLPYLEN-----GQILLIGATTENPIMSIV-PAVRSR---CQIFEFKALSD 153 Query: 176 DFLEKVIVKM------FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 +E+V+++ A++QI DK+ I + + L A L++ + Sbjct: 154 HDIEQVLIRALKEVFNLAEKQI--DKEAINIIARSADGDLRVALNLLETI 201 >gi|238020918|ref|ZP_04601344.1| hypothetical protein GCWU000324_00815 [Kingella oralis ATCC 51147] gi|237867898|gb|EEP68904.1| hypothetical protein GCWU000324_00815 [Kingella oralis ATCC 51147] Length = 436 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 45/189 (23%), Positives = 72/189 (38%), Gaps = 27/189 (14%) Query: 51 QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110 AV L P +IL G +G GK+ LA I + + A S + D R+ Sbjct: 38 LAVALASGEPH----SMILWGSAGIGKTTLARIVAQGFDAQFLPISAVF--SGVKDIREA 91 Query: 111 VLLEDIDLLDFNDTQLF----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPD 157 + ++ T LF H N Q D+ L L+T A T S+ V Sbjct: 92 ITQAEMAWQRGKRTILFVDEVHRFNKAQQ-DAFLPHVESGLITFIGATTENPSFEVNAA- 149 Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFA---DRQIFIDKKLAAYIVQRMERSLVFAEK 214 L SR A V + + + L ++ K+F + QI I + I+Q + Sbjct: 150 LLSR---AQVYTLKPLNPEALAQLCDKVFRLPENAQIRITPEAQQLIIQHADGDARRLLN 206 Query: 215 LVDKMDNLA 223 ++++ A Sbjct: 207 TLEQIIRAA 215 >gi|213405279|ref|XP_002173411.1| DNA-dependent ATPase MGS1 [Schizosaccharomyces japonicus yFS275] gi|212001458|gb|EEB07118.1| DNA-dependent ATPase MGS1 [Schizosaccharomyces japonicus yFS275] Length = 514 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 62/181 (34%), Gaps = 30/181 (16%) Query: 54 RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL-----DSILIDTR 108 LI+ +IL G SG GK+ LA I + + + A S I +++ Sbjct: 116 NLIERDEC---PSMILWGNSGVGKTTLARIIAKTTGAHFLEVSATSASVSDCRKIFEESQ 172 Query: 109 KPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL------LMTARTFPVSWGVCLPDLCSRL 162 + L + F D H N Q D L L+T L SR Sbjct: 173 NLLRLTGKKTIVFLDEV--HRFNRAQQ-DIFLPMVEKGLIT-LNPSFRLNSA---LLSR- 224 Query: 163 KAATVVKISLPDDD-----FLEKV-IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216 +V ++ D D + I +R++ +D+ + +I + A + Sbjct: 225 --CSVFTFNVLDKDNVLSILRRAMQIESERKERKLELDESILQHISAICDGDARVALNCL 282 Query: 217 D 217 + Sbjct: 283 E 283 >gi|108799292|ref|YP_639489.1| recombination factor protein RarA [Mycobacterium sp. MCS] gi|119868408|ref|YP_938360.1| recombination factor protein RarA [Mycobacterium sp. KMS] gi|108769711|gb|ABG08433.1| Recombination protein MgsA [Mycobacterium sp. MCS] gi|119694497|gb|ABL91570.1| Recombination protein MgsA [Mycobacterium sp. KMS] Length = 445 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 64/156 (41%), Gaps = 27/156 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVL--------L 113 VIL GP G+GK+ LA++ S + S K + +++ R+ +L + Sbjct: 62 VILYGPPGTGKTTLASLISHATGRRFEALSALSAGVKEVRAVIETARQGILRGQQTVLFI 121 Query: 114 EDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +++ L + + LL+ A T S+ V P L SR + ++++ Sbjct: 122 DEVHRFSKTQQDALL----AAVENRIVLLVAATTENPSFSVVAP-LLSR---SLILQLQP 173 Query: 173 PDDDFLEKVIVKMFAD-RQIF----IDKKLAAYIVQ 203 D + +V+ + AD R + + IVQ Sbjct: 174 LAPDSITEVVRRAVADPRGLADSVDVSDDAVDLIVQ 209 >gi|77919922|ref|YP_357737.1| recombination factor protein RarA [Pelobacter carbinolicus DSM 2380] gi|77546005|gb|ABA89567.1| Recombination protein MgsA [Pelobacter carbinolicus DSM 2380] Length = 432 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 33/197 (16%), Positives = 73/197 (37%), Gaps = 32/197 (16%) Query: 67 VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKP------------VL 112 VI GP G+GK+ +A + + +SR FS + + + + +K + Sbjct: 53 VIFWGPPGTGKTTMAQVIAGSTRSRFVFFSAVLQGIKEVREIVKKAREERAYHNRKTLLF 112 Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +++I + F + L+ A T S+ + L SR + V + Sbjct: 113 VDEIHRFNKAQQDAFLPY---VEKGDITLIGATTENPSFEINSA-LLSR---SRVFVLQP 165 Query: 173 PDDDFLEKVIVKMFAD-RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL-- 224 D + +++ + D R + D + A++ + + A ++ ++ A Sbjct: 166 LDAADIAQLLQRALTDSRGLDNKFPETDSETLAFLAGQAQ---GDARVALNALEVAADLS 222 Query: 225 SRGMGITRSLAAEVLKE 241 IT + L++ Sbjct: 223 KEQRAITLQAVKDALQQ 239 >gi|260061886|ref|YP_003194966.1| recombination factor protein RarA [Robiginitalea biformata HTCC2501] gi|88786019|gb|EAR17188.1| putative ATPase, AAA family protein [Robiginitalea biformata HTCC2501] Length = 427 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 38/209 (18%), Positives = 78/209 (37%), Gaps = 28/209 (13%) Query: 54 RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIA--------------KS 99 L + +I GP G+GK+ LA+I +++S F+ A Sbjct: 29 ALTRQIANGTVPSMIFWGPPGTGKTTLAHIIAEESGRPFFTLSAINSGVKDVREVIEKAR 88 Query: 100 LDSILIDTRKPVL-LEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 L TR P+L +++I + L + + L+ A T S+ V +P Sbjct: 89 QGGGLFTTRNPILFIDEIHRFSKSQQDSLL----AAVEKGWVTLIGATTENPSFEV-IPA 143 Query: 158 LCSRLKAATVVKISLPD-DDFLEKVIVKMFADRQI---FIDKKLAAYIVQRMERSLVFAE 213 L SR V + +D L+ + M +D Q+ I + +++ Sbjct: 144 LLSR---CQVYTLESFGKEDLLKLLERAMASDSQLQSREIKLEETDALLRLSGGDGRKLL 200 Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + + + + + IT + ++++ Sbjct: 201 NIFELVVSASPEDPVRITDKMVTDLVQNQ 229 >gi|225419780|ref|ZP_03762083.1| hypothetical protein CLOSTASPAR_06118 [Clostridium asparagiforme DSM 15981] gi|225041584|gb|EEG51830.1| hypothetical protein CLOSTASPAR_06118 [Clostridium asparagiforme DSM 15981] Length = 449 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 67/174 (38%), Gaps = 23/174 (13%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFS-------------NIAKSLDSILIDTRKPV 111 +I GP G GK+ LA+I + ++ + + +A++ + R V Sbjct: 60 PSMIFWGPPGVGKTTLASIIAKRTHAEFINFSAVTSGIKEIKEVMARAEQGRRMGKRTVV 119 Query: 112 LLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++I + F + S +L+ A T S+ + L SR V + Sbjct: 120 FVDEIHRFNKAQQDAFLPY---VEKGSIILIGATTENPSFEINAA-LLSR---CRVFVLQ 172 Query: 172 LPDDDFLEKVIVKMFAD-RQI-FIDKKLAAYIVQRMER-SLVFAEKLVDKMDNL 222 ++ L +++ R +++ ++ ++ + R S A ++ ++ Sbjct: 173 GLGEEDLTRLLKNALQSPRGFGYLNVDISDAMLGAIARFSGGDARTALNILEMA 226 >gi|193212227|ref|YP_001998180.1| Holliday junction DNA helicase RuvB [Chlorobaculum parvum NCIB 8327] gi|238692619|sp|B3QM27|RUVB_CHLP8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|193085704|gb|ACF10980.1| Holliday junction DNA helicase RuvB [Chlorobaculum parvum NCIB 8327] Length = 342 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 81/200 (40%), Gaps = 25/200 (12%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTR------FSNIAKSLDSIL--IDTRKPVLLEDIDL 118 V+L GP G GK+ LA+I + + + A +L +L + + +++I Sbjct: 56 VLLSGPPGLGKTTLAHIIAAEMGGGIKITSGPLIDKAGNLAGLLTSLKKGDILFIDEIHR 115 Query: 119 LDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD------------LCSRLKA-- 164 L + ++ +++ Y +L+ + + + L L S L+A Sbjct: 116 LAPAVEE--YLYSAMEDYRIDILLDSGPASRAVQLKLEPFTLVGATTRSGLLTSPLRARF 173 Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNLA 223 ++ + L+ +IV+ I +D+ A I +R + A +L+ + D Sbjct: 174 GINSRLDYYSPELLQSIIVRAAGILNIGVDEDAAMEIARRSRGTPRIANRLLRRARDFAQ 233 Query: 224 LSRGMGITRSLAAEVLKETQ 243 ++ I+ ++A L+ + Sbjct: 234 VANEASISLAVARRTLESLE 253 >gi|288555372|ref|YP_003427307.1| recombination factor protein RarA [Bacillus pseudofirmus OF4] gi|288546532|gb|ADC50415.1| recombination factor protein RarA, AAA ATPase [Bacillus pseudofirmus OF4] Length = 422 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 27/169 (15%), Positives = 63/169 (37%), Gaps = 27/169 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS---------TRFSNIAKSLDSILIDTRKPVLLEDID 117 +IL GP G GK+ +A + + + ++ ++ + + V+L+++ Sbjct: 43 MILYGPPGVGKTSIATAIAGSTDTPFKLLNAVVHNKKDMEIAVAEAKMHGQLIVILDEVH 102 Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL--P 173 L D L H+ + +L+ A T + P + SR + ++ P Sbjct: 103 RLDKAKQDFLLPHL-----EKGLIILIGATTANPYHSIN-PAIRSR---CQIFELESLTP 153 Query: 174 DD---DFLEKVI--VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 DD + + F QI +++ +++ + A ++ Sbjct: 154 DDIKTALIRAIQNPESGFGKEQIEMEEDAISHLAHMCGGDVRSALNALE 202 >gi|290973999|ref|XP_002669734.1| predicted protein [Naegleria gruberi] gi|284083285|gb|EFC36990.1| predicted protein [Naegleria gruberi] Length = 428 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + ++++T L + I ++ + Sbjct: 208 PPKGVLLYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRD 259 >gi|260819040|ref|XP_002604690.1| hypothetical protein BRAFLDRAFT_228800 [Branchiostoma floridae] gi|229290018|gb|EEN60701.1| hypothetical protein BRAFLDRAFT_228800 [Branchiostoma floridae] Length = 449 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 58/163 (35%), Gaps = 41/163 (25%) Query: 65 RVVILVGPSGSGKSCLANIW---SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 ++L GP G GK+ +A I + + +++RF ++ ++ + + D+ + Sbjct: 52 PSMVLWGPPGCGKTTMAQIIAKNAKQHQNSRFVALSATMSGVDE-------VRDVIKVAK 104 Query: 122 NDTQLF-----------HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCS 160 N+ +F H N + + +L+ T S L S Sbjct: 105 NEQTMFRRKTILFIDEIHRFNKKQQDTFLPHVESGTIVLIGATTENPSFSLNSA---LLS 161 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203 R + + K+ + D + I++ A I ++ Sbjct: 162 RCRVIVLEKLGVEDVEL----ILRRAAH---AIGDMTLLFLCN 197 >gi|91782394|ref|YP_557600.1| recombination factor protein RarA [Burkholderia xenovorans LB400] gi|296162243|ref|ZP_06845038.1| AAA ATPase central domain protein [Burkholderia sp. Ch1-1] gi|91686348|gb|ABE29548.1| Recombination protein MgsA [Burkholderia xenovorans LB400] gi|295887510|gb|EFG67333.1| AAA ATPase central domain protein [Burkholderia sp. Ch1-1] Length = 437 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 68/189 (35%), Gaps = 20/189 (10%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA + +D + + ++ S + D R+ V I + + T + Sbjct: 48 MILWGPPGVGKTTLARLMADAFHAEFIA--LSAVLSGVKDIREAVETAQIHRANGHQTLV 105 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N + + + A T S+ V L SR A V + Sbjct: 106 FVDEVHRFNKSQQDAFLPHVESGLFVFVGATTENPSFEVNSA-LLSR---AAVYVLKSLT 161 Query: 175 DDFLEKVIVKMFAD-RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITR 232 D+ +++ + + + + ++ + ++ + A + I Sbjct: 162 DEEQRELLERAQKELGGLTFTDEARDALIGSADGDGRKLLNNLEIVARAASQQKTTEIDG 221 Query: 233 SLAAEVLKE 241 +L L E Sbjct: 222 ALLGSALAE 230 >gi|269926092|ref|YP_003322715.1| AAA ATPase central domain protein [Thermobaculum terrenum ATCC BAA-798] gi|269789752|gb|ACZ41893.1| AAA ATPase central domain protein [Thermobaculum terrenum ATCC BAA-798] Length = 423 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 37/200 (18%), Positives = 74/200 (37%), Gaps = 34/200 (17%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G+GK+ LA ++ + S A S+ + ++E L N Sbjct: 55 PSIILWGPPGTGKTSLAMAIAETTSSNFVHLSAVSVGVPELRR----VIESAIRLKRNLR 110 Query: 125 Q---LF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 + +F H N + S L+ A T S+ V L SR V Sbjct: 111 KRTIVFLDEIHRFNKAQQDAVLPHVENGSITLIGATTENPSFEVNSA-LLSR---CRVYV 166 Query: 170 ISLPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 ++ ++ ++ ++ + D R + +D ++ + + A + ++ Sbjct: 167 LNPLSEEHIKLILKRAIEDKERGLGSYALQVDDVALEFLA---DLANGDARIALTALEMA 223 Query: 223 A-LSRGMGITRSLAAEVLKE 241 A ++ I L EV++ Sbjct: 224 ARVANDGHIDVDLIREVVQR 243 >gi|70731237|ref|YP_260978.1| recombination factor protein RarA [Pseudomonas fluorescens Pf-5] gi|68345536|gb|AAY93142.1| ATPase, AAA family [Pseudomonas fluorescens Pf-5] Length = 441 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 36/210 (17%), Positives = 77/210 (36%), Gaps = 32/210 (15%) Query: 57 DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 ++ +I GP G GK+ LA + ++ S + F ++ L + + + + Sbjct: 40 EALEQGALHSMIFWGPPGVGKTTLARLLAEVSDAH-FETVSAVLAGVKEIRQAVEIAKQQ 98 Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162 T LF H N Q D +L+ T L SR Sbjct: 99 AGQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154 Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLV 216 A V + D+ L ++ + + RQ+ + + ++ + +++ Sbjct: 155 --ARVYVLKSLDEAALGTLVQRALTEERGLGKRQLSLSDEGFQMLLSAAD---GDGRRML 209 Query: 217 DKMDNLA-LSR-GMGITRSLAAEVLKETQQ 244 + ++N + L+ G I+ L +L +T++ Sbjct: 210 NLLENASDLAEDGGEISVDLLQSLLGDTRR 239 >gi|302380554|ref|ZP_07269019.1| Holliday junction DNA helicase RuvB [Finegoldia magna ACS-171-V-Col3] gi|303233656|ref|ZP_07320310.1| Holliday junction DNA helicase RuvB [Finegoldia magna BVS033A4] gi|302311497|gb|EFK93513.1| Holliday junction DNA helicase RuvB [Finegoldia magna ACS-171-V-Col3] gi|302495090|gb|EFL54842.1| Holliday junction DNA helicase RuvB [Finegoldia magna BVS033A4] Length = 335 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 33/210 (15%), Positives = 71/210 (33%), Gaps = 53/210 (25%) Query: 43 LLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 + + + P +L GP G GK+ LA+I +++ +++ Sbjct: 45 FIEAAKNR----------NEPLDHALLYGPPGLGKTTLAHIIANEMGVNLRVTSGPAIEK 94 Query: 103 ILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ-------YDSSLLMTARTFPVSWGVCL 155 L+ D+L ++ H IN + D +L + P + + + Sbjct: 95 PSDLASILTNLQKDDVLFIDEI---HRINRSVEEILYPAMEDYALDIIVGKGPSARSLRI 151 Query: 156 PDL----------CS-------RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK-- 196 DL S R + ++ + L D + L+K++ + I ID++ Sbjct: 152 -DLEKFTLIGATTRSGQLTGPLRDRFGVLLNLELYDIESLKKIVTRSAGVLGIGIDEEGA 210 Query: 197 ------------LAAYIVQRMERSLVFAEK 214 +A +++R+ R Sbjct: 211 MEIARRSRGTPRIANRLLKRV-RDYAEVRA 239 >gi|145538063|ref|XP_001454737.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124422514|emb|CAK87340.1| unnamed protein product [Paramecium tetraurelia] Length = 426 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 28/184 (15%), Positives = 68/184 (36%), Gaps = 39/184 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ +A + ++++T L + I ++ Sbjct: 205 PPKGVLMHGPPGTGKTMMARACAAQTKATFLKLAGPQLVQMFIGDGAKMVRDAFQLAQEK 264 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQ---YDSSLLMTARTFPVSW 151 ++++D + + ++N + D ++ A P Sbjct: 265 APAIIFIDELDAIGTKRYDSDKNGDREVQRTMLELLNQLDGFSPDDRIKVIAATNRPDIL 324 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI-VQRMERSL 209 L L S RL ++ LP+++ +++ R++ + K+ Y+ + R Sbjct: 325 DPAL--LRSGRLD--RKIEFPLPNEEARAQIL--KIHSRKMSVAKETVNYVEIARSTDEF 378 Query: 210 VFAE 213 A+ Sbjct: 379 NGAQ 382 >gi|45643125|ref|NP_996671.1| nuclear valosin-containing protein-like isoform 2 [Homo sapiens] gi|2406580|gb|AAB70460.1| nuclear VCP-like protein NVLp.1 [Homo sapiens] gi|119590122|gb|EAW69716.1| nuclear VCP-like, isoform CRA_c [Homo sapiens] Length = 750 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 59/168 (35%), Gaps = 42/168 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P R V+L GP G GK+ LA+ + + A + + + + Sbjct: 191 PPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFEQAVSN 250 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151 + +++ID + QL + N++ L++ A P S Sbjct: 251 APCIIFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSL 310 Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKK 196 L +A + + +PD+ E+++ + R++ + + Sbjct: 311 DPALR------RAGRFDREICLGIPDEASRERILQTLC--RKLRLPQA 350 >gi|303246593|ref|ZP_07332871.1| AAA ATPase central domain protein [Desulfovibrio fructosovorans JJ] gi|302491933|gb|EFL51811.1| AAA ATPase central domain protein [Desulfovibrio fructosovorans JJ] Length = 408 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 11/136 (8%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI--LIDTRKPVLLEDIDLLD 120 ++ GP G GKS LA I + R S L ++ LI ++ ++L+++ Sbjct: 43 PSLLFFGPPGCGKSTLALILARAKERPYVRVSAPEAGLAALRELIKGKEILILDELHRFS 102 Query: 121 FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 F + + +L+ T S+ V L SRL V ++ L Sbjct: 103 KAQQDFFLP---LLETGEIVLLATTTENPSFSVTRQ-LLSRL---HVFRLRPLSQAELLV 155 Query: 181 VIVKMFADRQIFIDKK 196 + + + + + + Sbjct: 156 LAERGAKEAGMELAPE 171 >gi|319638052|ref|ZP_07992816.1| hypothetical protein HMPREF0604_00439 [Neisseria mucosa C102] gi|317400697|gb|EFV81354.1| hypothetical protein HMPREF0604_00439 [Neisseria mucosa C102] Length = 435 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 20/134 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G GK+ LA I + + A S + D R+ + +I L T L Sbjct: 50 MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIREAIEKAEIALQQGQATIL 107 Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 F H N Q D+ L L+T A T S+ V P L SR A V + Sbjct: 108 FVDEVHRFNKAQQ-DAFLPYVESGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQSL 162 Query: 174 DDDFLEKVIVKMFA 187 D L+K+I K+ A Sbjct: 163 SSDDLKKLIAKVLA 176 >gi|302424037|ref|XP_003009845.1| cell division cycle protein [Verticillium albo-atrum VaMs.102] gi|261361679|gb|EEY24107.1| cell division cycle protein [Verticillium albo-atrum VaMs.102] Length = 634 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 64/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R V+L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 252 PPRGVLLYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 311 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + + ++M A P S Sbjct: 312 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSID-- 369 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + V I +PD +++ + + + + Sbjct: 370 -PALR-RFGRFDREVDIGIPDPTGRLEILQ--IHTKNMKLGDDV 409 >gi|260175364|ref|ZP_05761776.1| cell division protein CDC48 [Bacteroides sp. D2] gi|315923595|ref|ZP_07919835.1| holliday junction DNA helicase [Bacteroides sp. D2] gi|313697470|gb|EFS34305.1| holliday junction DNA helicase [Bacteroides sp. D2] Length = 594 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 32/216 (14%), Positives = 68/216 (31%), Gaps = 59/216 (27%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKS------------RSTRFSNIAKSLDSILIDTRK- 109 P+ + L GP G GK+ +A ++ +S S + + + + K Sbjct: 356 PNGTL-LYGPPGCGKTYIAEKFAQESGLNFMMVKASDLGSIYIHGMQGKIAELFDEAEKK 414 Query: 110 ---PVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTF----PVS 150 + ++ D + + + +N+ + ++ T+ P Sbjct: 415 APTVICFDEFDAMVPDRSRMDNVGQSGEVNEFLSQLNNCAERGIFVIGTSNRPDRIDPAV 474 Query: 151 WGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF-------IDKKLAAYIVQ 203 D ++ I LPD + + + V DR + K A Y+ Sbjct: 475 LRTGRID--------KLIYIPLPDKEARKSLFVFQLRDRWCEETIDCEILADKTAGYVA- 525 Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 +V + AL+ M ++ E+L Sbjct: 526 ------SDITFIV---NETALAAAMK-DIPISQELL 551 >gi|68481174|ref|XP_715502.1| likely 26S proteasome regulatory particle ATPase Rpt5p [Candida albicans SC5314] gi|68481315|ref|XP_715432.1| likely 26S proteasome regulatory particle ATPase Rpt5p [Candida albicans SC5314] gi|46437054|gb|EAK96407.1| likely 26S proteasome regulatory particle ATPase Rpt5p [Candida albicans SC5314] gi|46437126|gb|EAK96478.1| likely 26S proteasome regulatory particle ATPase Rpt5p [Candida albicans SC5314] Length = 454 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 63/178 (35%), Gaps = 40/178 (22%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + ++ GP G+GK+ LA + +S +T A L + I ++ Sbjct: 233 PPKGALMYGPPGTGKTLLARACAAQSGATFLKLAAPQLVQMFIGDGAKLVRDAFALAKEK 292 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151 ++++D + + ++N + D ++ A + Sbjct: 293 APTIIFIDELDAIGTKRFDSDKSGDREVQRTMLELLNQLDGFGSDDRVKVLAATNRVDTL 352 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 L L S RL ++ LP ++ E V+ R++ D + + + RS Sbjct: 353 DPAL--LRSGRLD--RKIEFPLPSEEARESVLKIHA--RKLHCDNNSVNW--RELARS 402 >gi|320536521|ref|ZP_08036549.1| hypothetical protein HMPREF9554_01280 [Treponema phagedenis F0421] gi|320146630|gb|EFW38218.1| hypothetical protein HMPREF9554_01280 [Treponema phagedenis F0421] Length = 259 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 2/72 (2%) Query: 39 SRDDLLVHSAIEQAVRLIDSWPSWPSRV-VILVGPSGSGKSCLANIWSDKSRSTRFSNIA 97 + +V + A + S+ P+ ++L+G +G+GK+ LA+ + F + Sbjct: 89 GFKNFVVDEKNKTARDSVLSFAKNPNNKWLLLLGKNGTGKTHLAHAVLKLTGG-IFRDFD 147 Query: 98 KSLDSILIDTRK 109 +L Sbjct: 148 DVSTDLLDAQAG 159 >gi|269213974|ref|ZP_06158287.1| replication-associated recombination protein A [Neisseria cinerea ATCC 14685] gi|269144864|gb|EEZ71282.1| replication-associated recombination protein A [Neisseria cinerea ATCC 14685] Length = 387 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 20/134 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G GK+ LA I + + A S + D R+ + +I L T L Sbjct: 1 MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIREAIDKAEIALQQGRATIL 58 Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 F H N Q D+ L L+T A T S+ V P L SR A V + Sbjct: 59 FVDEVHRFNKAQQ-DAFLPHVESGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQSL 113 Query: 174 DDDFLEKVIVKMFA 187 D L+K+I K+ A Sbjct: 114 SSDDLKKLIAKVLA 127 >gi|15616562|ref|NP_244868.1| transposase (27) [Bacillus halodurans C-125] gi|10176625|dbj|BAB07719.1| transposase (27) [Bacillus halodurans C-125] Length = 261 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 49/112 (43%), Gaps = 22/112 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDTR 108 +IL+GP G GK+ +A ++ F ++ ++ I Sbjct: 111 LILLGPPGIGKTYIAIGLGLEAVYRGFHVYFATMGELVQLLKSEEYLNKSKVQLKRIRNA 170 Query: 109 KPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 V+++D+ + + + FH+IN +++ SS+++T+ P WG + D Sbjct: 171 DLVIIDDLMYMAMDQREANLFFHLINHLYER-SSIILTSNKSPEEWGHLIGD 221 >gi|84496693|ref|ZP_00995547.1| conserved ATP/GTP binding protein [Janibacter sp. HTCC2649] gi|84383461|gb|EAP99342.1| conserved ATP/GTP binding protein [Janibacter sp. HTCC2649] Length = 457 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 67/174 (38%), Gaps = 25/174 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 IL GP G+GK+ LA++ + + A + + + DL D T L Sbjct: 64 AILWGPPGTGKTTLAHLVATAANREFVELSAVTAGVKDVRAVMEAAARNRDLYD-RQTVL 122 Query: 127 F----HIINSIHQY--------DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H Q +L+ A T S+ V P L SR + ++ ++ D Sbjct: 123 FLDEIHRFTKAQQDALLPGVETRQVILVAATTENPSFSVIAP-LLSR---SMLITLTSLD 178 Query: 175 DDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 D + +V+ D R + + + ++V R+ S A + + ++ A Sbjct: 179 DAQVAEVLDSAVTDARGLDAAYALSSEAREHLV-RI--SGGDARRALTSLEAAA 229 >gi|328351596|emb|CCA37995.1| Uncharacterized AAA domain-containing protein C26H5.02c [Pichia pastoris CBS 7435] Length = 863 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 61/186 (32%), Gaps = 42/186 (22%) Query: 65 RVVILVGPSGSGKSCLANIWSDKS--RSTRFSNIAKSLDS---ILIDTRKPVLLEDIDLL 119 +IL GP G GK+ LA I + + R S + + + + R + L Sbjct: 469 PSMILWGPPGVGKTSLARIIAASTHNRCVELSATSSGISECRKVFEEARNEM------RL 522 Query: 120 DFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLKAA 165 T LF H N + +L+ T L SR Sbjct: 523 TKRRTVLFCDEIHRFNKSQQDAFLPYVERGDIILIGATTENPSFQLNSA---LLSR---C 576 Query: 166 TVVKISLPDDDFLEKVIVKMF----ADRQIF-------IDKKLAAYIVQRMERSLVFAEK 214 V ++ D++ L KV+ + R++ + + YI+ A Sbjct: 577 RVFVLNKLDNEDLAKVVNRSLLLVNRVRKLVYNMPVLRLTTESLQYIIGVAGGDSRTALN 636 Query: 215 LVDKMD 220 LV+ +D Sbjct: 637 LVEMVD 642 >gi|296139682|ref|YP_003646925.1| ATPase AAA [Tsukamurella paurometabola DSM 20162] gi|296027816|gb|ADG78586.1| AAA ATPase central domain protein [Tsukamurella paurometabola DSM 20162] Length = 456 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 36/170 (21%), Positives = 74/170 (43%), Gaps = 23/170 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 VIL GP G+GK+ +A++ S + S K + +++ R+ +L+++ +L Sbjct: 73 VILYGPPGTGKTTIASLISGATGRRFEALSALSAGVKDVRAVIEMARRRLLVDEQTVLFI 132 Query: 122 NDTQLF-----HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 ++ F + + + LL+ A T S+ V P L SR + ++++ + Sbjct: 133 DEVHRFSKAQQDALLAAVENRVVLLVAATTENPSFSVVSP-LLSR---SLILQLRPLEPG 188 Query: 177 FLEKVIVKMFAD-RQ----IFIDKKLAAYIVQ----RMERSLVFAEKLVD 217 + ++I + D R + I + ++V+ RSL E D Sbjct: 189 HISELIDRALTDPRGYDGALTITDEARDHLVRLAGGDARRSLTALEAAAD 238 >gi|255556938|ref|XP_002519502.1| Transitional endoplasmic reticulum ATPase, putative [Ricinus communis] gi|223541365|gb|EEF42916.1| Transitional endoplasmic reticulum ATPase, putative [Ricinus communis] Length = 805 Score = 45.5 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 64/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP GSGK+ +A ++++ + F SN+ K+ + + Sbjct: 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN 300 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + +++ A P S Sbjct: 301 APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSID-- 358 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PD+ +V+ + + + + + Sbjct: 359 -PALR-RFGRFDREIDIGVPDEVGRLEVL--RIHTKNMKLAEDV 398 Score = 39.7 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 514 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 570 >gi|229828714|ref|ZP_04454783.1| hypothetical protein GCWU000342_00780 [Shuttleworthia satelles DSM 14600] gi|229793308|gb|EEP29422.1| hypothetical protein GCWU000342_00780 [Shuttleworthia satelles DSM 14600] Length = 447 Score = 45.5 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 57/157 (36%), Gaps = 28/157 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 VI GP G+GK+ LA + ++ + + + + + +D + T Sbjct: 55 VIFYGPPGTGKTTLARVIANTTSADFRQINATTAGKKDMQEAVEAA---KDTLGMYGKKT 111 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + + +L+ A T + V L SR + + ++ Sbjct: 112 ILFIDEIHRFNKGQQDYLLPYVEDGTVILIGATTENPYFEVNGA-LLSR---SVIFELKP 167 Query: 173 PDDDFLEKVIVKMFADR-------QIFIDKKLAAYIV 202 + + K++++ +DR I + ++ Sbjct: 168 LSQENIRKLLLRAISDREKGMGSYGAVIAEDALDFLA 204 >gi|254168540|ref|ZP_04875384.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469] gi|197622595|gb|EDY35166.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469] Length = 727 Score = 45.5 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 22/163 (13%), Positives = 62/163 (38%), Gaps = 33/163 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + V+L GP G+GK+ LA ++++ + N+ + + Sbjct: 215 PPKGVLLYGPPGTGKTLLAKAVANEANAHFIYLSGPEIMSKFYGQSEENLREIFKEAQDN 274 Query: 107 TRKPVLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + ++ QL +++ + +++ A P + Sbjct: 275 APSIIFIDEIDSIAPKRDEVSGEVERRVVAQLLALMDGLESRGKVVVIGATNRPNALD-- 332 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L + ++I +P + ++++ R + + + + Sbjct: 333 -PALRRPGRFDREIEIGIPGKNARKEILE--IHTRGVPLAEDV 372 Score = 39.0 bits (90), Expect = 0.55, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 16/70 (22%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILIDTRKP 110 ++L GP G+GK+ LA + +S + S + + Sbjct: 492 ILLYGPPGTGKTLLAKAVATESEANFISVKGPEFLSKWVGESEKAVREVFRKARQAAPAV 551 Query: 111 VLLEDIDLLD 120 + +++ID + Sbjct: 552 IFIDEIDAIA 561 >gi|27544716|dbj|BAC55053.1| DnaA [Mycobacterium parafortuitum] Length = 179 Score = 45.5 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 20/50 (40%), Gaps = 3/50 (6%) Query: 37 GISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANI 83 + + ++ ++ A I P+ + + G SG GK+ L + Sbjct: 112 RYTFETFVIGASNRFAHAASLAIAEAPARAYNPLFIWGESGLGKTHLLHA 161 >gi|308276523|gb|ADO26422.1| Replication-associated recombination protein A [Corynebacterium pseudotuberculosis I19] Length = 456 Score = 45.5 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 70/176 (39%), Gaps = 30/176 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRF-------------SNIAKSLDSILIDTRKPVLL 113 VIL GP G+GK+ +A++ S + + I ++ S++ R + + Sbjct: 75 VILYGPPGTGKTTIASLISTATGHHFVGLSALNSGVKEVRAVIDEARRSLIHGKRTVLFI 134 Query: 114 EDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +++ L + + + LL+ A T S+ V P L SR + V+++ Sbjct: 135 DEVHRFSKTQQDALL----AAVENRTVLLVAATTENPSFSVVSP-LLSR---SLVLQLQP 186 Query: 173 PDDDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 D +++V+ + D R + + + +V A + + ++ A Sbjct: 187 LDSGAIKEVLQRAIVDSRGLGSRIHVTDEALEQLVLLAG---GDARRALTYLEAAA 239 >gi|297816624|ref|XP_002876195.1| hypothetical protein ARALYDRAFT_485698 [Arabidopsis lyrata subsp. lyrata] gi|297322033|gb|EFH52454.1| hypothetical protein ARALYDRAFT_485698 [Arabidopsis lyrata subsp. lyrata] Length = 810 Score = 45.5 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 64/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP GSGK+ +A ++++ + F SN+ K+ + + Sbjct: 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN 300 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + ++++D + QL +++ + ++M A P S Sbjct: 301 APSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSID-- 358 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PD+ +V+ + + + + + Sbjct: 359 -PALR-RFGRFDREIDIGVPDEIGRLEVL--RIHTKNMKLAEDV 398 Score = 39.4 bits (91), Expect = 0.42, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 514 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 570 >gi|295675840|ref|YP_003604364.1| AAA ATPase central domain protein [Burkholderia sp. CCGE1002] gi|295435683|gb|ADG14853.1| AAA ATPase central domain protein [Burkholderia sp. CCGE1002] Length = 437 Score = 45.5 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 35/189 (18%), Positives = 68/189 (35%), Gaps = 20/189 (10%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA + +D + + ++ S + D R+ V I + + T + Sbjct: 48 MILWGPPGVGKTTLARLMADAFDAQFIA--LSAVLSGVKDIREAVETAQIHRANGHQTLV 105 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N + + + A T S+ V L SR A V + Sbjct: 106 FVDEVHRFNKSQQDAFLPHVESGLFVFVGATTENPSFEVNSA-LLSR---AAVYVLKSLT 161 Query: 175 DDFLEKVIVKMFAD-RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITR 232 DD +++ + + + + ++ + ++ + A + I Sbjct: 162 DDEQRELLERAQKELGGLTFTDEARTALIGSADGDGRKLLNNLEIVARAAAQQKTTEIDG 221 Query: 233 SLAAEVLKE 241 +L L E Sbjct: 222 ALLGSALAE 230 >gi|307320434|ref|ZP_07599850.1| IstB domain protein ATP-binding protein [Sinorhizobium meliloti AK83] gi|306893847|gb|EFN24617.1| IstB domain protein ATP-binding protein [Sinorhizobium meliloti AK83] Length = 270 Score = 45.5 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 57/165 (34%), Gaps = 37/165 (22%) Query: 29 FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI----- 83 F F +V A A+ D W + ++L G G GKS LA Sbjct: 79 TFDFTAVP-------MVSKARVMALVAGDVWLKNGAN-LMLFGGPGGGKSHLAAAIGAGL 130 Query: 84 ----WS----------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ---L 126 W K ++ R N+ +D ++L+D+ + + + L Sbjct: 131 IENGWRVLFTRTTDLVQKLQAAR-RNLDLEGAIAKLDKYHLLVLDDMAYVSKDQAETSVL 189 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 F +I S SLL+TA W PD KA T+ I Sbjct: 190 FELI-SARYERRSLLITANQPFGEWDKVFPD-----KAMTLAAID 228 >gi|255537837|ref|XP_002509985.1| Cell division protein ftsH, putative [Ricinus communis] gi|223549884|gb|EEF51372.1| Cell division protein ftsH, putative [Ricinus communis] Length = 925 Score = 45.5 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 35/100 (35%), Gaps = 21/100 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110 P V+L GP G GK+ +A + ++ + +L+ Sbjct: 447 PPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVN 506 Query: 111 ----VLLEDIDLLDFNDTQLF-----HIINSIHQYDSSLL 141 + +++ID L +F H+ N+ Q + L Sbjct: 507 KPSVIFIDEIDALATRRQGIFKESTDHLYNAATQERETTL 546 >gi|114320863|ref|YP_742546.1| recombination factor protein RarA [Alkalilimnicola ehrlichii MLHE-1] gi|114227257|gb|ABI57056.1| Recombination protein MgsA [Alkalilimnicola ehrlichii MLHE-1] Length = 461 Score = 45.5 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 33/197 (16%), Positives = 68/197 (34%), Gaps = 36/197 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G+GK+ LA + ++ + + S + + I + + T Sbjct: 73 MILWGPPGTGKTTLARLVAEAAEARFLTLSAVMAGVKDIRAAMEEATRV----RAAGGRT 128 Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N Q D +++ T L SR A V + Sbjct: 129 LLFVDEVHRFNKAQQDAFLPWVEDGTVIFIGATTENPSFELNNA---LLSR---ARVYVL 182 Query: 171 SLPDDDFLEKVIVKMFA--DRQ----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA- 223 D+ +E ++ + A +R + + +V+ + A + + ++ A Sbjct: 183 RALDEVAIEGIVRQALAEPERGYGGRVRLTDDALRLVVRAAD---GDARRALTTLEIAAD 239 Query: 224 LSRGMGITRSLAAEVLK 240 L+ + + E + Sbjct: 240 LAESDTVDEAAIREAVA 256 >gi|146293105|ref|YP_001183529.1| recombination factor protein RarA [Shewanella putrefaciens CN-32] gi|145564795|gb|ABP75730.1| Recombination protein MgsA [Shewanella putrefaciens CN-32] Length = 443 Score = 45.5 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 66/177 (37%), Gaps = 34/177 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLD---F 121 ++L GP G+GK+ LA + + S + R S + + I +E + Sbjct: 52 MMLWGPPGTGKTTLAELIAQYSNAHVERISAVTSGVKEIR------AAIEQAKAIAESRG 105 Query: 122 NDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 T LF H N + + + + A T S+ + L SR A V Sbjct: 106 QRTLLFVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEINNA-LLSR---ARVYL 161 Query: 170 ISLPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 I ++ + ++ + AD RQ+ + + + + Q + A L++ M Sbjct: 162 IKRLSNNEIAHIVTQALADTERGLGLRQLEMPESVLIKLAQLCDGDARKALNLLELM 218 >gi|300858568|ref|YP_003783551.1| hypothetical protein cpfrc_01151 [Corynebacterium pseudotuberculosis FRC41] gi|300686022|gb|ADK28944.1| hypothetical protein cpfrc_01151 [Corynebacterium pseudotuberculosis FRC41] gi|302206281|gb|ADL10623.1| Replication-associated recombination protein A [Corynebacterium pseudotuberculosis C231] gi|302330838|gb|ADL21032.1| Uncharacterized AAA domain-containing protein [Corynebacterium pseudotuberculosis 1002] Length = 445 Score = 45.5 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 70/176 (39%), Gaps = 30/176 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRF-------------SNIAKSLDSILIDTRKPVLL 113 VIL GP G+GK+ +A++ S + + I ++ S++ R + + Sbjct: 64 VILYGPPGTGKTTIASLISTATGHHFVGLSALNSGVKEVRAVIDEARRSLIHGKRTVLFI 123 Query: 114 EDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +++ L + + + LL+ A T S+ V P L SR + V+++ Sbjct: 124 DEVHRFSKTQQDALL----AAVENRTVLLVAATTENPSFSVVSP-LLSR---SLVLQLQP 175 Query: 173 PDDDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 D +++V+ + D R + + + +V A + + ++ A Sbjct: 176 LDSGAIKEVLQRAIVDSRGLGSRIHVTDEALEQLVLLAG---GDARRALTYLEAAA 228 >gi|320581575|gb|EFW95795.1| 26S protease regulatory subunit 6A [Pichia angusta DL-1] Length = 426 Score = 45.5 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 26/167 (15%), Positives = 58/167 (34%), Gaps = 38/167 (22%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + ++ GP G+GK+ LA + +S +T A L + I ++ Sbjct: 206 PPKGALMYGPPGTGKTLLARACAAQSNATFLKLAAPQLVQMFIGDGAKLVRDAFELAKEK 265 Query: 113 ------LEDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSW 151 ++++D + + ++N D ++ A + Sbjct: 266 SPTIIFIDELDAIGTKRFDSDKSGDREVQRTMLELLNQLDGFDSDDRVKVLAATNRVDTL 325 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L L S RL ++ LP ++ +++ R++ D + Sbjct: 326 DPAL--LRSGRLD--RKIEFPLPSEEARAQILQIHA--RKMTCDDNV 366 >gi|294792127|ref|ZP_06757275.1| ATPase, AAA family [Veillonella sp. 6_1_27] gi|294457357|gb|EFG25719.1| ATPase, AAA family [Veillonella sp. 6_1_27] Length = 433 Score = 45.5 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 60/157 (38%), Gaps = 30/157 (19%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 ++ GP G+GK+ LA I + S S + A ++ + T ++ED + Sbjct: 51 PSMLFYGPCGTGKTTLAGIIAKVSNSYFVNLNATNVGIGELRT----IIEDARKRVRSLQ 106 Query: 125 Q---LF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 Q LF H N + + +L+ A T + V P L SRL+ ++ Sbjct: 107 QRTILFLDEIHRFNKSQQDVLLPCVEDGTIILIGATTENPFFEVNRP-LLSRLR---LIT 162 Query: 170 ISLPDDDFLEKVIVKMFAD-------RQIFIDKKLAA 199 + + +++ + D R + + ++ Sbjct: 163 LEALTPKAIGQILRRAITDEEVGLGKRYLQVTDEVLE 199 >gi|90093334|ref|NP_001035017.1| transitional endoplasmic reticulum ATPase-like [Danio rerio] gi|89130628|gb|AAI14307.1| Zgc:136908 [Danio rerio] gi|220672874|emb|CAX14485.1| novel protein similar to vertebrate valosin-containing protein (VCP, zgc:136908) [Danio rerio] Length = 805 Score = 45.5 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 48/121 (39%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 239 PPRGILLYGPPGTGKTLVARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 298 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + ++++D + QL +++ + Q ++M A P S Sbjct: 299 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVVVMAATNRPNSVDAA 358 Query: 155 L 155 L Sbjct: 359 L 359 Score = 39.4 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 512 PSRGVLFYGPPGCGKTLLAKAIANECQANFVSIKGPELLTMWFGESEANVRDVFDKA 568 >gi|54297677|ref|YP_124046.1| recombination factor protein RarA [Legionella pneumophila str. Paris] gi|53751462|emb|CAH12880.1| hypothetical protein lpp1728 [Legionella pneumophila str. Paris] Length = 434 Score = 45.5 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 63/182 (34%), Gaps = 28/182 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125 +IL GP G GK+ +A + + + A I +E +D Q Sbjct: 49 MILWGPPGVGKTTIARLTAQAFDCEWIALSAVFSGVKDIRA----AIEKAQEYLIHDKQT 104 Query: 126 -LF----HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N Q +LL + A T S+ V P L SR A V + Sbjct: 105 ILFIDEIHRFNKAQQD--ALLPYTESGLITFIGATTENPSFEVN-PALLSR---AQVYVL 158 Query: 171 SLPDDDFLEKVIVKMFAD--RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228 L + L+ + ++ + ++ +++ + L+++ L+ Sbjct: 159 KLLSEQELKLLFLRAHQRALSSLQFTEEAMDFLISCADGDARRLLNLLEQTKTACLTIKT 218 Query: 229 GI 230 + Sbjct: 219 AV 220 >gi|325107722|ref|YP_004268790.1| Holliday junction DNA helicase RuvB domain protein [Planctomyces brasiliensis DSM 5305] gi|324967990|gb|ADY58768.1| Holliday junction DNA helicase RuvB domain protein [Planctomyces brasiliensis DSM 5305] Length = 318 Score = 45.5 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 68/192 (35%), Gaps = 38/192 (19%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND- 123 +L GP G GKS LAN+ + + +T + +S+ + +D +L+ ++ Sbjct: 45 PDTLLTGPPGQGKSSLANVIAQELATTLHETLGQSVSGPAELNALLLGAKDGELIHIDEV 104 Query: 124 --------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC--------------LPDLCSR 161 T LF I LL+T + +S + L L R Sbjct: 105 HELPTEQQTALF-----ICLDQRKLLVTNQKGALSIPLAKFSLLLSTTDPHKVLQPLRDR 159 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 ++ V++++ + L V+ + I + I R + A ++ Sbjct: 160 MR--MVLELAYLTEAELADVVRQRSRALNWNIADGVPDEIAVRGRGTPRIALRI------ 211 Query: 222 LALSRGMGITRS 233 L ++RS Sbjct: 212 --LQSARRVSRS 221 >gi|167752814|ref|ZP_02424941.1| hypothetical protein ALIPUT_01075 [Alistipes putredinis DSM 17216] gi|167659883|gb|EDS04013.1| hypothetical protein ALIPUT_01075 [Alistipes putredinis DSM 17216] Length = 423 Score = 45.5 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 41/190 (21%), Positives = 68/190 (35%), Gaps = 36/190 (18%) Query: 65 RVVILVGPSGSGKSCLANIWSD--KSRSTRFSNIA---KSLDSILIDTRKPVLLEDIDLL 119 IL GP G GK+ LA I + K S + K + +L RK + + Sbjct: 40 PSFILWGPPGVGKTTLAKIVATTLKRPFYTLSAVTSGVKEVREVLESARKQKFFDSKPPI 99 Query: 120 DF-NDTQLFHIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 F ++ H N + L+ A T S+ V P L SR V + Sbjct: 100 LFIDEI---HRFNKSQQDSLLGAVEQGVVTLIGATTENPSFEVISP-LLSR---CQVYIL 152 Query: 171 SLPDDDFLEKVIVKMFA------DRQIFI--DKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 D L+ ++ + A R+I + + L + S A KL++ +D + Sbjct: 153 QPMTDGELQTLLDRALATDPELKTREIEVQETEALFRF-------SGGDARKLLNILDII 205 Query: 223 ALSRGMGITR 232 + +T Sbjct: 206 TGAANGKVTI 215 >gi|302348724|ref|YP_003816362.1| Replication factor C large subunit [Acidilobus saccharovorans 345-15] gi|302329136|gb|ADL19331.1| Replication factor C large subunit [Acidilobus saccharovorans 345-15] Length = 484 Score = 45.5 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 30/211 (14%), Positives = 74/211 (35%), Gaps = 30/211 (14%) Query: 55 LIDSWPSW--PS-RVVILVGPSGSGKSCLANIWSDKS-------------RSTRFSNIAK 98 +++W P R +L GP G GK+ L + R+ Sbjct: 34 WLEAWLKGRPPEKRAALLYGPPGVGKTSLVEAAAHDYKLEVLELNASDYRRAEDIRRTVG 93 Query: 99 SLDSILIDTRKPVLL--EDIDLLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 T + +++ +++D + + L ++ I + +++TA W Sbjct: 94 VAAFRRPLTGRLMIILMDEVDGISAKGDAGGLDELLRIIPNAQNPIVLTANDP---WKDQ 150 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 L L + +++ + ++ + I D++ YI +++ Sbjct: 151 LRPLR---EVTLMIEFKNLSTGNVVSLLQNICDREHIECDREALRYIA---DKNAGDVRA 204 Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKETQQC 245 V+ ++ +A G +T LA +++ + Sbjct: 205 CVNDLEAVAEGYG-KVTMELARALVRGRDKS 234 >gi|161760546|ref|NP_907435.2| recombination factor protein RarA [Wolinella succinogenes DSM 1740] Length = 396 Score = 45.5 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 38/225 (16%), Positives = 83/225 (36%), Gaps = 31/225 (13%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 QL I ++ L A RLI+ GP G+GK+ A I + Sbjct: 6 QLLRPTSFEDLIGQEHLF--GANAPLRRLIEH---GSLPHAFFYGPPGTGKTSAAKIIAK 60 Query: 87 K---------SRSTRFSNIAKSLDSILIDTRKPVL-LEDIDLLDFNDTQLFHIINSIHQY 136 + + + + + L KP+L ++++ L N ++ + + Sbjct: 61 RLDRPFALFNATTFKIEELRSYLKEYKNALLKPLLFIDEVHRLSKNQQEVLLP---LMEN 117 Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196 ++++ A T + + + SR + + + LE ++ ++ + I +D Sbjct: 118 HEAIIIGASTENPYFAMTGA-IRSR---SMLFEFKPLGKKELEILLERVCENHSILLDNS 173 Query: 197 LAAYIVQRMERSLVFAEKLVDKMD-NLALSRGMGITRSLAAEVLK 240 Y+++ E A +++ +D +L L+ E LK Sbjct: 174 ARDYLLRSSE---GDARAMLNLLDCAYSLGES-----PLSLETLK 210 >gi|241763747|ref|ZP_04761795.1| AAA ATPase central domain protein [Acidovorax delafieldii 2AN] gi|241367052|gb|EER61437.1| AAA ATPase central domain protein [Acidovorax delafieldii 2AN] Length = 437 Score = 45.5 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 36/194 (18%), Positives = 67/194 (34%), Gaps = 24/194 (12%) Query: 68 ILVGPSGSGKSCLANIWSDKSRSTRFS---------------NIAKSLDSILIDTRKPVL 112 IL GP G GK+ +A + +D + S +A+S L+ R V Sbjct: 49 ILWGPPGVGKTTIARLMADAFDAQFISISAVLGGVKDIRDAVQLAESARDGLMQQRTIVF 108 Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 ++++ + + F + + A T S+ V L SR A V + Sbjct: 109 VDEVHRFNKSQQDAFLPH---VESGLFTFIGATTENPSFEVNSA-LLSR---AAVYVLQP 161 Query: 173 PD-DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGI 230 DD + V + I+ + +V + ++ ++ A I Sbjct: 162 LSTDDLKQIVALAQSQQALPAIENEAIERLVAYADGDARRLLNTLETLEMAAAQEQLAEI 221 Query: 231 TRSLAAEVLKETQQ 244 T + +VL E + Sbjct: 222 TDAWLLKVLGERMR 235 >gi|54025615|ref|YP_119857.1| recombination factor protein RarA [Nocardia farcinica IFM 10152] gi|54017123|dbj|BAD58493.1| putative AAA ATPase [Nocardia farcinica IFM 10152] Length = 451 Score = 45.5 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 69/173 (39%), Gaps = 24/173 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRK--------PVLL 113 V+L GP G+GK+ LA++ S + S K + +++ R+ + + Sbjct: 71 VLLFGPPGTGKTTLASLISQATGRRFEALSALSAGVKEVRAVIDLARRRLTAGERTVLFI 130 Query: 114 EDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +++ L + + LL+ A T S+ V P L SR + V+++ Sbjct: 131 DEVHRFSKTQQDALL----AAVENRIVLLVGATTENPSFSVVSP-LLSR---SLVLQLRS 182 Query: 173 PDDDFLEKVIVKMFAD-RQIFIDKKLAAYIVQRMER-SLVFAEKLVDKMDNLA 223 D + V+ + AD R ++ + + R + A + + ++ A Sbjct: 183 LTDADIRTVLDRALADPRGFGGAYQVTDAALDHIVRIAGGDARRALTALEASA 235 >gi|295092161|emb|CBK78268.1| phage DNA replication protein (predicted replicative helicase loader) [Clostridium cf. saccharolyticum K10] Length = 283 Score = 45.5 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 42/118 (35%), Gaps = 21/118 (17%) Query: 50 EQAVRLIDSWPSWPSRVV-IL-VGPSGSGKSCLANIWSDKSR-----------STRFSNI 96 A +D W + + L G GSGKS LA ++ + +++ Sbjct: 109 ATARFFVDHWEEMQEKKLGYLFWGHVGSGKSYLAGCIANALMEKEVSVYMTNFAAILNDL 168 Query: 97 AKSLDS-----ILIDTRKPVLLEDIDLLDFNDTQLFHIINSI---HQYDSSLLMTART 146 A S + + ++++D + + L + N I ++ L++T Sbjct: 169 AASFEGRNEYIARLCRYPLLIIDDFGMERGTEYGLEQVYNVIDSRYRSGKPLVVTTNR 226 >gi|239631709|ref|ZP_04674740.1| recombination factor protein RarA [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239526174|gb|EEQ65175.1| recombination factor protein RarA [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 423 Score = 45.5 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 60/167 (35%), Gaps = 23/167 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117 +IL GP G+GK+ +A+ + ++ + R N A + + +LL++I Sbjct: 34 MILYGPPGTGKTSIASAIAGSTKYAFRILNAATDTKKDLQIVAEEAKMSGTVILLLDEIH 93 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 LD + + +L+ A T + P + SR + ++ D Sbjct: 94 RLDKTKQDFLLP---LLESGRIVLIGATTENPYMNIQ-PAIRSR---TQIFQVKPLTPDD 146 Query: 178 LEKVIVKMFA-------DRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 + I + A D Q+ + Y+ L A ++ Sbjct: 147 ITSAIKRALADHKRGLGDYQVDLQPDALDYLTHATNGDLRSALNGLE 193 >gi|114566015|ref|YP_753169.1| recombination factor protein RarA [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114336950|gb|ABI67798.1| Recombination protein MgsA [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 440 Score = 45.5 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 38/196 (19%), Positives = 77/196 (39%), Gaps = 28/196 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI------DLLD 120 +L GP GSGK+ +A+I + + S + A S I + + ++ Sbjct: 55 FVLYGPPGSGKTTIAHIIARTTSSHYAAIKAVSSGVGEIRKIAADAADHLKYYQQSSIIF 114 Query: 121 FNDTQLFHIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 ++ H N Q D +L++ T L SR+K + + Sbjct: 115 VDEI---HRFNKSQQDVLLPYVEDGTLILIGATTENPLYEINNALLSRMK---LYIMEAL 168 Query: 174 DDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 + + L +++ + AD R + ID++ IVQ + A ++D + + + S Sbjct: 169 NANSLRRIVEQALADPERGLGKHNISIDEQSMVMIVQAAQGDARTALNILDTL-HNSYSS 227 Query: 227 GMGITRSLAAEVLKET 242 G + + E+L++ Sbjct: 228 KDG-SLRITPELLEKV 242 >gi|119774909|ref|YP_927649.1| recombination factor protein RarA [Shewanella amazonensis SB2B] gi|119767409|gb|ABL99979.1| Recombination protein MgsA [Shewanella amazonensis SB2B] Length = 442 Score = 45.5 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 40/193 (20%), Positives = 76/193 (39%), Gaps = 29/193 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 ++L GP G+GK+ LA + + + + R S + + I + +++ T Sbjct: 51 MLLWGPPGTGKTTLAELVARYANAHVERISAVTSGVKEIRAAIEQA---KNVAQSRGQRT 107 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + + + + A T S+ V L SR V I Sbjct: 108 LLFVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEVNNA-LLSR---CRVYLIKR 163 Query: 173 PDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 +DD + +++ + +D R + + +L + I + + A L++ M +L L Sbjct: 164 LEDDAIGQILAQANSDEARGLGKRGLLLKAELKSAIARLCDGDARKALNLLELMSDL-LP 222 Query: 226 RGMGITRSLAAEV 238 G L +EV Sbjct: 223 DGGEYNLELLSEV 235 >gi|288561110|ref|YP_003424596.1| ATPase [Methanobrevibacter ruminantium M1] gi|288543820|gb|ADC47704.1| ATPase [Methanobrevibacter ruminantium M1] Length = 375 Score = 45.5 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 34/221 (15%), Positives = 77/221 (34%), Gaps = 50/221 (22%) Query: 2 NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLI----- 56 +++ E+ S V D K+ + K +Q F DD +V ++ + Sbjct: 98 SIISENTSIVVADVDKDKRSSIKSKQYDVHF--------DD-IVGQENAKSKSKLIYKYL 148 Query: 57 ---DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR------------STRFSNIAKSLD 101 D + +W + V+ G G+GK+ LA +++ + A + Sbjct: 149 QNPDKFGTWAPKNVLFYGAPGTGKTMLAKALANELDIRLYLVKSTSLIGEHVGDAASRIH 208 Query: 102 SILIDTRK----PVLLEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTA 144 + + + +++ID + + L ++ I D + + A Sbjct: 209 ELFEAASRNAPSLIFIDEIDAIALHRSFQSLRGDVAEIVNSLLTEMDGISPNDGVVTIAA 268 Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 P + + SR + K+ DD+ E +++ + Sbjct: 269 TNNPSAIDFAI---RSRFEEEIEFKL-PSDDERREIIMLNL 305 >gi|194389988|dbj|BAG60510.1| unnamed protein product [Homo sapiens] Length = 765 Score = 45.5 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 59/168 (35%), Gaps = 42/168 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P R V+L GP G GK+ LA+ + + A + + + + Sbjct: 206 PPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFEQAVSN 265 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151 + +++ID + QL + N++ L++ A P S Sbjct: 266 APCIIFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSL 325 Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKK 196 L +A + + +PD+ E+++ + R++ + + Sbjct: 326 DPALR------RAGRFDREICLGIPDEASRERILQTLC--RKLRLPQA 365 >gi|21362820|sp|Q975U2|PAN_SULTO RecName: Full=Proteasome-activating nucleotidase; Short=PAN; AltName: Full=Proteasomal ATPase; AltName: Full=Proteasome regulatory ATPase; AltName: Full=Proteasome regulatory particle Length = 392 Score = 45.5 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 27/57 (47%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P + V+L GP G+GK+ LA + +S +T +A + ++ E +L Sbjct: 167 PPKGVLLYGPPGTGKTLLAKAVATESNATFIQVVASEFAQKFVGEGARIVREVFELA 223 >gi|228926918|ref|ZP_04089984.1| Prophage LambdaBa02, DNA replication protein DnaC [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228832653|gb|EEM78224.1| Prophage LambdaBa02, DNA replication protein DnaC [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 161 Score = 45.5 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 45/116 (38%), Gaps = 24/116 (20%) Query: 61 SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL---------------- 104 W +++ G G+GK+ LA ++ + + +S+ +L Sbjct: 6 EWNGESLMIWGEPGNGKTHLAAAIVNELSKKAYIVVFQSVPELLQRIRSTFNSENKENET 65 Query: 105 -----IDTRKPVLLEDIDL---LDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWG 152 + ++L+DI ++ + +LF+II+ ++ + L T+ P Sbjct: 66 QIMRALLECDLLILDDIGAEKTTEWVEEKLFNIIDGRYRKELPTLYTSNLEPKELK 121 >gi|213401066|gb|ACJ47181.1| chromosomal replication initiation protein [Wolbachia endosymbiont of Dipetalonema gracile] Length = 125 Score = 45.5 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 36/81 (44%), Gaps = 1/81 (1%) Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218 SRL V I+ + ++ +++ K + ++ + ++ ++ E ++K Sbjct: 4 KSRLGWGLVADINETTFELRLGILQAKVEQMNMYVPKDVLEFLARNIKSNIRELEGALNK 63 Query: 219 MDNLALSRGMGITRSLAAEVL 239 + + +L G +T A+E L Sbjct: 64 VTHTSLI-GRSMTVESASETL 83 >gi|148642702|ref|YP_001273215.1| cell division protein CDC48 [Methanobrevibacter smithii ATCC 35061] gi|148551719|gb|ABQ86847.1| cell division control protein Cdc48, AAA+ ATPase family [Methanobrevibacter smithii ATCC 35061] Length = 730 Score = 45.5 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 31/219 (14%), Positives = 77/219 (35%), Gaps = 52/219 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106 P + V++ GP G+GK+ LA + +S + + N+ + + + Sbjct: 236 PPKGVLMHGPPGTGKTLLAKAVASESDAHFIAINGPEIMSKYVGGSEENLREYFEEAEEN 295 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + ++++D + QL +++ + +++ A P S Sbjct: 296 APSIIFIDELDAIAPKREDTQGETERRTVAQLLTLMDGLKSRGQVVVIGATNRPDSLDQA 355 Query: 155 LP-----DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209 L D ++I +PD + E+++ R + + + + + + Sbjct: 356 LRRPGRFD--------REIEIGVPDSEEREEILE--IHTRNMPLAEDVDLHKLASTTHGF 405 Query: 210 VFAEKLVDKMDNLAL--SRGMGITRSLAAEVLKETQQCD 246 V A D +L M + R + E+ + + + Sbjct: 406 VGA-------DLESLCKEAAMRVVRRIIPEIKNDEEIPE 437 >gi|145540886|ref|XP_001456132.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124423942|emb|CAK88735.1| unnamed protein product [Paramecium tetraurelia] Length = 818 Score = 45.5 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 64/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R V+L GP GSGK+ +A ++++ + F N+ K+ + + Sbjct: 250 PPRGVLLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGEAEGNLRKAFEEAEKN 309 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + +++ A P S Sbjct: 310 SPAIIFIDEIDSIAPKREKVSGEVERRVVSQLLTLMDGLKGRGQVIVIGATNRPNSID-- 367 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PD+ +++ + + + + + Sbjct: 368 -PALR-RFGRFDREIDIGVPDEVGRMEIL--RIHTKNMKLAEDV 407 >gi|28897881|ref|NP_797486.1| recombination factor protein RarA [Vibrio parahaemolyticus RIMD 2210633] gi|260364483|ref|ZP_05777108.1| recombination factor protein RarA [Vibrio parahaemolyticus K5030] gi|260877040|ref|ZP_05889395.1| recombination factor protein RarA [Vibrio parahaemolyticus AN-5034] gi|260898067|ref|ZP_05906563.1| recombination factor protein RarA [Vibrio parahaemolyticus Peru-466] gi|260902448|ref|ZP_05910843.1| recombination factor protein RarA [Vibrio parahaemolyticus AQ4037] gi|28806094|dbj|BAC59370.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi|308088962|gb|EFO38657.1| recombination factor protein RarA [Vibrio parahaemolyticus Peru-466] gi|308093687|gb|EFO43382.1| recombination factor protein RarA [Vibrio parahaemolyticus AN-5034] gi|308110636|gb|EFO48176.1| recombination factor protein RarA [Vibrio parahaemolyticus AQ4037] gi|308114616|gb|EFO52156.1| recombination factor protein RarA [Vibrio parahaemolyticus K5030] Length = 449 Score = 45.5 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 43/199 (21%), Positives = 68/199 (34%), Gaps = 38/199 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G+GK+ LA + ++ + + A + I E+ + T L Sbjct: 54 MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAREN--KMAGRRTIL 111 Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172 F H N Q D ++ T L SR A V K++ Sbjct: 112 FVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKLTS 165 Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIV------QRMERSLVFAEKLVDKM 219 D + + + + D R + + + RM SL + E L D Sbjct: 166 LDKEEISLALNQAINDKERGLGDTPANFADNVLDRLAELVNGDARM--SLNYLELLYDMA 223 Query: 220 DNLALSRGMGITRSLAAEV 238 ++ A IT L AEV Sbjct: 224 EDNA-QGEKEITLKLLAEV 241 >gi|73971222|ref|XP_866137.1| PREDICTED: similar to Transitional endoplasmic reticulum ATPase (TER ATPase) (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing protein) (VCP) isoform 9 [Canis familiaris] Length = 787 Score = 45.1 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 58/144 (40%), Gaps = 25/144 (17%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---LEDIDLL 119 P R ++L GP G+GK+ +A ++++ + F + S L + L E+ + Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296 Query: 120 DFND------TQLFHIINSIHQYDSSLLMTARTFPVSW--------------GVCLPDLC 159 + +QL +++ + Q ++M A P S + +PD Sbjct: 297 THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDAT 356 Query: 160 SRLK--AATVVKISLPDDDFLEKV 181 RL+ + L DD LE+V Sbjct: 357 GRLEILQIHTKNMKLADDVDLEQV 380 Score = 39.0 bits (90), Expect = 0.55, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 491 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 547 >gi|50365221|ref|YP_053646.1| recombination factor protein RarA [Mesoplasma florum L1] gi|50363777|gb|AAT75762.1| putative helicase subunit of Holliday junction resolvase [Mesoplasma florum L1] Length = 410 Score = 45.1 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 79/193 (40%), Gaps = 22/193 (11%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTR---------FSNIAKSLDSILIDTRKPVLLED 115 R +I GPSG GK+ A ++ N+ K +D + R +++++ Sbjct: 40 RSLIFYGPSGVGKTSFAIALANDLNIEYDLFNASYDKKENLTKIIDKAINKERFILIIDE 99 Query: 116 IDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 I L+ + + ++N + + L T P + P + SR AT++++ Sbjct: 100 IHRLNRDKQDI--LLNFMESGNVYLFATTTENP--FFTINPAIRSR---ATILELKRVSH 152 Query: 176 DFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL-ALSRGMGITR 232 D + K+ D++ I I + Y+ E + L++ ++ L +G IT Sbjct: 153 DESFAFVNKLIKDKKVDINIKPESLKYL---CELNSGDIRSLLNNIELFHNLYKGEEITI 209 Query: 233 SLAAEVLKETQQC 245 L + ++ + + Sbjct: 210 DLISSIISQGKNP 222 >gi|255526973|ref|ZP_05393866.1| Microtubule-severing ATPase [Clostridium carboxidivorans P7] gi|296185137|ref|ZP_06853547.1| AAA family ATPase, CDC48 family protein [Clostridium carboxidivorans P7] gi|255509332|gb|EET85679.1| Microtubule-severing ATPase [Clostridium carboxidivorans P7] gi|296049971|gb|EFG89395.1| AAA family ATPase, CDC48 family protein [Clostridium carboxidivorans P7] Length = 704 Score = 45.1 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 21/162 (12%), Positives = 53/162 (32%), Gaps = 39/162 (24%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 ++L GP G+GK+ +A + ++ + + + + Sbjct: 217 ILLYGPPGTGKTLIAKAIASETEAHFIHVNGPEIMNKYYGESEAKIRQIFKEARNKAPSI 276 Query: 111 VLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158 + L+++D + QL +++ + +++ A P S L Sbjct: 277 IFLDELDSIAPRRENVHGDVEKRVVAQLLALMDGLESRGQVVVIGATNIPDSLDTALR-- 334 Query: 159 CSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 +A + I PD D ++ + + +D + Sbjct: 335 ----RAGRFDKEIAIMPPDKDGRFNILQ--IHTKGMPLDDDV 370 >gi|227538998|ref|ZP_03969047.1| recombination ATPase [Sphingobacterium spiritivorum ATCC 33300] gi|227241201|gb|EEI91216.1| recombination ATPase [Sphingobacterium spiritivorum ATCC 33300] Length = 439 Score = 45.1 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 48/201 (23%), Positives = 78/201 (38%), Gaps = 34/201 (16%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD-FND 123 +IL GP G GK+ LA + + FS A I ++E D L FN Sbjct: 55 PSMILWGPPGVGKTTLALLMAKALDRPFFSLSAIQSGVKDIRE----VIEKADQLQKFNQ 110 Query: 124 TQ--LF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 Q LF H + + L+ A T S+ V L SR V Sbjct: 111 EQPILFIDEIHRFSKSQQDSLLGAVERGLVTLIGATTENPSFEVISA-LLSR---CQVYV 166 Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDK--KLAAY-IVQRMERSLVFAEKLVDKMD---NLA 223 + ++ L ++ ++ + ++ ++ Y + R+ S A KL++ ++ N + Sbjct: 167 LKHLTEEELIGIVNSAISEDEFLKEEKIEVLEYEALLRL--SGGDARKLLNVLELVVNAS 224 Query: 224 LSRGMGITRSLAAEVLKETQQ 244 LS IT VLK+ QQ Sbjct: 225 LSLNKPITNEF---VLKQVQQ 242 >gi|301066249|ref|YP_003788272.1| helicase subunit of the Holliday junction resolvase-like ATPase [Lactobacillus casei str. Zhang] gi|300438656|gb|ADK18422.1| Helicase subunit of the Holliday junction resolvase related ATPase [Lactobacillus casei str. Zhang] Length = 431 Score = 45.1 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 60/167 (35%), Gaps = 23/167 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117 +IL GP G+GK+ +A+ + ++ + R N A + + +LL++I Sbjct: 42 MILYGPPGTGKTSIASAIAGSTKYAFRILNAATDTKKDLQIVAEEAKMSGTVILLLDEIH 101 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 LD + + +L+ A T + P + SR + ++ D Sbjct: 102 RLDKTKQDFLLP---LLESGRIVLIGATTENPYMNIQ-PAIRSR---TQIFQVKPLTPDD 154 Query: 178 LEKVIVKMFA-------DRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 + I + A D Q+ + Y+ L A ++ Sbjct: 155 ITSAIKRALADHKRGLGDYQVDLQPDALDYLTHATNGDLRSALNGLE 201 >gi|20808203|ref|NP_623374.1| recombination factor protein RarA [Thermoanaerobacter tengcongensis MB4] gi|254479310|ref|ZP_05092650.1| ATPase, AAA family protein [Carboxydibrachium pacificum DSM 12653] gi|20516797|gb|AAM24978.1| uncharacterized ATPase related to the helicase subunit of the Holliday junction resolvase [Thermoanaerobacter tengcongensis MB4] gi|214034758|gb|EEB75492.1| ATPase, AAA family protein [Carboxydibrachium pacificum DSM 12653] Length = 440 Score = 45.1 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 56/144 (38%), Gaps = 26/144 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS-------------TRFSNIAKSLDSILIDTRKPVLL 113 +IL GP G GK+ LA I ++ + S +A++ + R V + Sbjct: 55 MILWGPPGVGKTTLAMIIANMTNSKFVNFSAVLSGIKEIKEIMAQAERDAMYGQRTVVFI 114 Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 ++I + F H+ + + +L+ A T S+ V L SR + V + Sbjct: 115 DEIHRFNKAQQDAFLPHV-----EKGNIILIGATTENPSFEVNSA-LLSR---SKVFMMK 165 Query: 172 LPDDDFLEKVIVKMFAD--RQIFI 193 D + ++ + D R + + Sbjct: 166 PLDVKDIMIILKRALKDEERGLGL 189 >gi|17229735|ref|NP_486283.1| hypothetical protein all2243 [Nostoc sp. PCC 7120] gi|17131334|dbj|BAB73942.1| all2243 [Nostoc sp. PCC 7120] Length = 613 Score = 45.1 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 53/154 (34%), Gaps = 46/154 (29%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS------------TRFSNIAKSLDSILIDTRKP---- 110 ++L GP G+GK+ LA + ++R+ +++ + R+ Sbjct: 396 ILLWGPPGTGKTLLAKAVASQARANFIGVNGPELLSRWVGASEQAVRELFAKARQAEPCV 455 Query: 111 VLLEDIDLLD-----------FNDTQLFHII------------------NSIHQYDSSLL 141 V +++ID L +D + ++ N D +LL Sbjct: 456 VFIDEIDTLAPARGSFSGDSGVSDRVVGQLLTELDGIEVGSTILVIGATNRPDALDPALL 515 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 R + V LPDL SRL V P D Sbjct: 516 RAGRLD-LQMKVDLPDLASRLAILLVHSQGRPLD 548 Score = 35.1 bits (80), Expect = 8.8, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 42/121 (34%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109 P+R V+LVGP G+GK+ A +++ + + L I K Sbjct: 126 PTRGVLLVGPPGTGKTLTARGLAEELGVNYIALVGPEVISKYYGEAEQRLRGIFEKAAKN 185 Query: 110 ---PVLLEDIDLLDFNDTQ------------LFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID L + + L +++ +++ A P Sbjct: 186 APCIIFIDEIDSLAPDRSAVEGEVEKRLVAQLLSLMDGFSHSQGVIVLAATNRPDHLDPA 245 Query: 155 L 155 L Sbjct: 246 L 246 >gi|289578597|ref|YP_003477224.1| ATPase AAA [Thermoanaerobacter italicus Ab9] gi|289528310|gb|ADD02662.1| AAA ATPase [Thermoanaerobacter italicus Ab9] Length = 266 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 60/171 (35%), Gaps = 30/171 (17%) Query: 15 KQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE----QAVRLIDSWPSWPSRVV--I 68 Q+ + Q R + ++ ++ + AV WP ++ + + Sbjct: 51 NQQRKIRLERLRQYSLMDKRFEQCTFENFQINENNQKLYKMAVNYCKRWPEMKAKNIGFL 110 Query: 69 LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL---------------------IDT 107 GP G+GKS LA ++K IA S +L + Sbjct: 111 FWGPPGTGKSFLAFCIANKLIENLVPVIAISTIGLLNRIKQTYKNYSEEEEVEIINILRN 170 Query: 108 RKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 ++L+D+ + ND +L+ II+S ++ +++T L Sbjct: 171 ASLLVLDDLGAENNNDWAREKLYEIIDSRYRDGKPMIVTTNLTLTQLKEKL 221 >gi|251780556|ref|ZP_04823476.1| Holliday junction DNA helicase RuvB [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084871|gb|EES50761.1| Holliday junction DNA helicase RuvB [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 344 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 39/201 (19%), Positives = 78/201 (38%), Gaps = 27/201 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G GK+ LANI + + +++ L+D D+L ++ Sbjct: 55 VLLYGPPGLGKTTLANIIAKEMTGDLKITSGPAIERAGDLAAILTTLKDYDVLFIDEI-- 112 Query: 127 FHIINSIHQ-------YDSSL--LMTARTFPVSWGVCLPD------------LCS--RLK 163 H +N + D +L ++ S + LP L S R + Sbjct: 113 -HRLNRSVEEILYPAMEDYALDIVIGKGAAAKSIRLDLPKFTLIGATTRIGMLTSPLRDR 171 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNL 222 + + D++ L++++++ A I ++ A I R + A +L+ ++ D Sbjct: 172 FGVLCAMEYYDENQLKEIVIRSAAVFGCKITEEGALEIASRSRGTPRIANRLLKRVRDYS 231 Query: 223 ALSRGMGITRSLAAEVLKETQ 243 + I+ A E L+ + Sbjct: 232 EVKSNKVISLKEAREALELLE 252 >gi|76802726|ref|YP_330821.1| AAA-type ATPase (transitional ATPase homolog) [Natronomonas pharaonis DSM 2160] gi|76558591|emb|CAI50183.1| AAA-type ATPase (transitional ATPase homolog) [Natronomonas pharaonis DSM 2160] Length = 702 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 21/173 (12%), Positives = 62/173 (35%), Gaps = 39/173 (22%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRST----------------RFSNIAKSLDSILID 106 P V+L GP G+GK+ +A +++ + + ++ + + + Sbjct: 222 PPSGVLLYGPPGTGKTLIAKAVANEVDAHFEVIDGPEIVSKYKGESEERLRETFERAVDN 281 Query: 107 TRKPVLLEDIDLLDF--NDTQ---------LFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 V +++ID + ++ L +++ + + +++ A + L Sbjct: 282 QPAVVFIDEIDSIAGTRDEDADMENRVVAQLLTLMDGLENHGRLIVIGATNRVDAIDPAL 341 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQR 204 + ++I PD+ +++ R + + + + Y+ R Sbjct: 342 R------RGGRFDREIEIGAPDEGGRREILDVHT--RGMPLSEDVDIDYLAAR 386 Score = 39.0 bits (90), Expect = 0.62, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 23/57 (40%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P ++L GP G+GK+ LA + +S S L + + + E D Sbjct: 481 PPTGILLYGPPGTGKTLLARALAGESDVNFVSVAGPELLDKYVGESEKAVREVFDRA 537 >gi|319442139|ref|ZP_07991295.1| recombination factor protein RarA [Corynebacterium variabile DSM 44702] Length = 457 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 36/196 (18%), Positives = 76/196 (38%), Gaps = 33/196 (16%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVL------ 112 VIL GP G+GK+ +A++ + S ++ K + S++ D R+ + Sbjct: 71 ESSVILYGPPGTGKTTVASLIAGGSGRRFEALSALNSGVKEVRSVIADARRRLADGIPTV 130 Query: 113 --LEDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 ++++ L S + + LL+ A T S+ V P L SR + +V+ Sbjct: 131 LFIDEVHRFSKTQQDALL----SAVENRTVLLVAATTENPSFSVVAP-LLSR---SLLVQ 182 Query: 170 ISLPDDDFLEKVIVKMFAD-RQ----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 + + + ++ + D R I + + + + A + + ++ A Sbjct: 183 LKPLEPADISTLLRRAIEDPRGYDGKITLTDEACDRLTA---LAAGDARRALTYLEAAAE 239 Query: 225 S---RGMGITRSLAAE 237 S G +T + A Sbjct: 240 SVEDSGGEVTVDVVAR 255 >gi|237844815|ref|XP_002371705.1| cell division protein 48, putative [Toxoplasma gondii ME49] gi|211969369|gb|EEB04565.1| cell division protein 48, putative [Toxoplasma gondii ME49] Length = 963 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 23/162 (14%), Positives = 57/162 (35%), Gaps = 35/162 (21%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILIDTR 108 R V+L G SG GK+ LA +++ + +N+ + + + Sbjct: 409 RGVLLHGSSGCGKTLLAKAIANECGANFLTVNGPEVMSKLAGESEANLRRIFEEAAALSP 468 Query: 109 KPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156 + +++ID + QL +++ + +++ A P L Sbjct: 469 CLLFIDEIDSIASKREKTQGEVEKRIVAQLLTLMDGVSSDKGIVVLAATNRPNQLDPALR 528 Query: 157 DLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 R + ++I +PD+ +++ K + + + Sbjct: 529 ----RFGRFDREIEIPIPDEKGRTEILKKKAEK--MNLGPDV 564 >gi|27544696|dbj|BAC55043.1| DnaA [Mycobacterium fortuitum subsp. fortuitum] Length = 188 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 3/50 (6%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANI 83 + D ++ ++ A + P+R + + G SG GK+ L + Sbjct: 121 RYTFDTFVIGASNRFAHAATLAIAEAPARAYNPLFIWGESGLGKTHLLHA 170 >gi|288869580|ref|ZP_05975070.2| AAA family ATPase [Methanobrevibacter smithii DSM 2374] gi|288861611|gb|EFC93909.1| AAA family ATPase [Methanobrevibacter smithii DSM 2374] Length = 740 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 31/219 (14%), Positives = 77/219 (35%), Gaps = 52/219 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106 P + V++ GP G+GK+ LA + +S + + N+ + + + Sbjct: 246 PPKGVLMHGPPGTGKTLLAKAVASESDAHFIAINGPEIMSKYVGGSEENLREYFEEAEEN 305 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + ++++D + QL +++ + +++ A P S Sbjct: 306 APSIIFIDELDAIAPKREDTQGETERRTVAQLLTLMDGLKSRGQVVVIGATNRPDSLDQA 365 Query: 155 LP-----DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209 L D ++I +PD + E+++ R + + + + + + Sbjct: 366 LRRPGRFD--------REIEIGVPDSEEREEILE--IHTRNMPLAEDVDLHKLASTTHGF 415 Query: 210 VFAEKLVDKMDNLAL--SRGMGITRSLAAEVLKETQQCD 246 V A D +L M + R + E+ + + + Sbjct: 416 VGA-------DLESLCKEAAMRVVRRIIPEIKNDEEIPE 447 >gi|163801973|ref|ZP_02195869.1| seryl-tRNA synthetase [Vibrio sp. AND4] gi|159174114|gb|EDP58922.1| seryl-tRNA synthetase [Vibrio sp. AND4] Length = 449 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 44/199 (22%), Positives = 67/199 (33%), Gaps = 38/199 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G+GK+ LA + ++ + + A + I E+ + T L Sbjct: 54 MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAREN--KMAGRRTIL 111 Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172 F H N Q D ++ T L SR A V K+ Sbjct: 112 FVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKLMS 165 Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIV------QRMERSLVFAEKLVDKM 219 D D + + + D R + + + RM SL + E L D Sbjct: 166 LDKDEISLALNQAITDKERGLGNTSAHFADNVLERLAELVNGDARM--SLNYLELLYDMA 223 Query: 220 DNLALSRGMGITRSLAAEV 238 ++ A IT L AEV Sbjct: 224 EDNA-QGDKEITLRLLAEV 241 >gi|86157157|ref|YP_463942.1| recombination factor protein RarA [Anaeromyxobacter dehalogenans 2CP-C] gi|85773668|gb|ABC80505.1| Recombination protein MgsA [Anaeromyxobacter dehalogenans 2CP-C] Length = 437 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 36/196 (18%), Positives = 69/196 (35%), Gaps = 27/196 (13%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFS--------------NIAKSLDSILIDTRKP 110 +IL GP G+GK+ LA I + ++ + A + R Sbjct: 52 PSLILWGPPGTGKTTLARIVAQRTGADFVPFSAVLGGVKEIREIVAAARDRRRMHRKRTI 111 Query: 111 VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 + +++I F + + L+ A T S+ V L SR V + Sbjct: 112 LFVDEIHRFTRAQQDAFLPH---VEDGTITLIGATTENPSFEVNAA-LLSR---CRVATL 164 Query: 171 SLPDDDFLEKVIVKM-FADRQIFIDKKLAAYIVQRMER-SLVFAEKLVDKMDNLA----L 224 +D + ++ + A + LA + R S A K ++ ++ A L Sbjct: 165 RALTEDEVAALLDRATAAPEGLAGAVALAPEARDTIARLSYGDARKALNALEVSAAAVRL 224 Query: 225 SRGMGITRSLAAEVLK 240 + + ++ A E L+ Sbjct: 225 AGRPAVEKADAEEALQ 240 >gi|332535766|ref|ZP_08411508.1| putative polynucleotide enzyme with nucleotide triphosphate hydrolase domain [Pseudoalteromonas haloplanktis ANT/505] gi|332034834|gb|EGI71368.1| putative polynucleotide enzyme with nucleotide triphosphate hydrolase domain [Pseudoalteromonas haloplanktis ANT/505] Length = 447 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 63/174 (36%), Gaps = 26/174 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA I ++ + ++ A + I ++++ T + Sbjct: 52 LILWGPPGVGKTTLAQIIANHADASLIQMSAVTAGVKDIRDSVTQARDNLES-RGQRTLM 110 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N + + + + A T S+ + L SR A V + Sbjct: 111 FVDEVHRFNKSQQDAFLPHIEDGTFIFVGATTENPSFALNNAIL-SR---ARVYVLKSLA 166 Query: 175 DDFLEKVIVK------MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 D L VI + + + I I + + S A K+++ ++ Sbjct: 167 DTDLYTVIERALKQDEQLSQKHITIADNAKKAL---CQASGGDARKVLNLLEQA 217 >gi|328950019|ref|YP_004367354.1| Holliday junction ATP-dependent DNA helicase ruvB [Marinithermus hydrothermalis DSM 14884] gi|328450343|gb|AEB11244.1| Holliday junction ATP-dependent DNA helicase ruvB [Marinithermus hydrothermalis DSM 14884] Length = 325 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 30/206 (14%), Positives = 78/206 (37%), Gaps = 30/206 (14%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLL 113 P ++L GP G GK+ LA++ +++ + ++ + ++ + + Sbjct: 37 PLDHMLLFGPPGLGKTTLAHVIANELGVNIRVTSGPAIEKPGDLAAILTNSLEEGDILFI 96 Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD---------------- 157 ++I L + H+ ++ + +++ + + LP Sbjct: 97 DEIHRLSRTAEE--HLYPAMEDFKIDIVLGQGPAARTLRLELPRFTLIGATTRPGLISSP 154 Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 L SR ++ P++ L + + + + I+ + A I +R ++ A++L Sbjct: 155 LRSRFGIIEHLEFYTPEE--LAEGVARDARLLGLEIEHEAALEIGRRARGTMRIAKRLFR 212 Query: 218 KM-DNLALSRGMGITRSLAAEVLKET 242 ++ D ++ +T A E L Sbjct: 213 RVRDFAEVAGDPRVTLERAREALDAL 238 >gi|225464722|ref|XP_002264062.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 534 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 61/182 (33%), Gaps = 33/182 (18%) Query: 65 RVVILVGPSGSGKSCLANIWSDKS------RSTRFSNIAKSLDSILIDTRKPVLLEDIDL 118 +IL GP G+GK+ +A + S R S + + + + ++ Sbjct: 144 PSIILWGPPGTGKTSIAKAIVNSSSQPSSYRFVSLSAVTAGVKDVRDVVEEARKIKVSKN 203 Query: 119 LDFNDTQLF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 ++ T LF H N + + S + + A T S+ + P L SR Sbjct: 204 MNSKRTLLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITP-LLSR---CR 259 Query: 167 VVKISLPDDDFLEKVIVKMFADRQ-----------IFIDKKLAAYIVQRMERSLVFAEKL 215 V+ ++ + ++ + AD I + ++ + A Sbjct: 260 VLTLNPLQPSHVASLLNRAVADTGRGLAWSVGGASIEVSDDAIDFLSSHCDGDARVALNA 319 Query: 216 VD 217 ++ Sbjct: 320 LE 321 >gi|222445802|ref|ZP_03608317.1| hypothetical protein METSMIALI_01445 [Methanobrevibacter smithii DSM 2375] gi|222435367|gb|EEE42532.1| hypothetical protein METSMIALI_01445 [Methanobrevibacter smithii DSM 2375] Length = 740 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 31/219 (14%), Positives = 77/219 (35%), Gaps = 52/219 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106 P + V++ GP G+GK+ LA + +S + + N+ + + + Sbjct: 246 PPKGVLMHGPPGTGKTLLAKAVASESDAHFIAINGPEIMSKYVGGSEENLREYFEEAEEN 305 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + ++++D + QL +++ + +++ A P S Sbjct: 306 APSIIFIDELDAIAPKREDTQGETERRTVAQLLTLMDGLKSRGQVVVIGATNRPDSLDQA 365 Query: 155 LP-----DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209 L D ++I +PD + E+++ R + + + + + + Sbjct: 366 LRRPGRFD--------REIEIGVPDSEEREEILE--IHTRNMPLAEDVDLHKLASTTHGF 415 Query: 210 VFAEKLVDKMDNLAL--SRGMGITRSLAAEVLKETQQCD 246 V A D +L M + R + E+ + + + Sbjct: 416 VGA-------DLESLCKEAAMRVVRRIIPEIKNDEEIPE 447 >gi|221501587|gb|EEE27357.1| cell division protein, putative [Toxoplasma gondii VEG] Length = 963 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 23/162 (14%), Positives = 57/162 (35%), Gaps = 35/162 (21%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILIDTR 108 R V+L G SG GK+ LA +++ + +N+ + + + Sbjct: 409 RGVLLHGSSGCGKTLLAKAIANECGANFLTVNGPEVMSKLAGESEANLRRIFEEAAALSP 468 Query: 109 KPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156 + +++ID + QL +++ + +++ A P L Sbjct: 469 CLLFIDEIDSIASKREKTQGEVEKRIVAQLLTLMDGVSSDKGIVVLAATNRPNQLDPALR 528 Query: 157 DLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 R + ++I +PD+ +++ K + + + Sbjct: 529 ----RFGRFDREIEIPIPDEKGRTEILKKKAEK--MNLGPDV 564 >gi|159040235|ref|YP_001539488.1| ATP-dependent metalloprotease FtsH [Salinispora arenicola CNS-205] gi|157919070|gb|ABW00498.1| ATP-dependent metalloprotease FtsH [Salinispora arenicola CNS-205] Length = 669 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 32/210 (15%), Positives = 69/210 (32%), Gaps = 43/210 (20%) Query: 67 VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110 V+L GP G+GK+ LA + ++ S + + + Sbjct: 208 VLLFGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKTNAPAI 267 Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 V +++ID + D + L + ++ +L+ A P L Sbjct: 268 VFVDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDTKGGVILIAATNRPDILDPAL 327 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 L+ + + PD + + ++ + D L + +R A Sbjct: 328 ------LRPGRFDRQIPVDAPDMEGRKAILRVHAKGKPFTPDVDL-DAVARRTP-GFSGA 379 Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKET 242 L + ++ AL R++ + L+E+ Sbjct: 380 -DLANVINEAALLTARRDKRAITNDSLEES 408 >gi|315925759|ref|ZP_07921966.1| replication-associated recombination protein A [Pseudoramibacter alactolyticus ATCC 23263] gi|315620868|gb|EFV00842.1| replication-associated recombination protein A [Pseudoramibacter alactolyticus ATCC 23263] Length = 442 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 53/148 (35%), Gaps = 23/148 (15%) Query: 54 RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN-------------IAKSL 100 RLID +IL GP G GK+ LA + + ++ + + + + Sbjct: 45 RLIDRD---DIPSMILWGPPGVGKTTLAQVIARQTAAAFVAFSAVNSGIKDIKKIMGDAK 101 Query: 101 DSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 R V +++I + F + S +L+ A T S+ + L S Sbjct: 102 SHAAFGRRTLVFIDEIHRFNKAQQDAFLPY---VEDGSIVLIGATTENPSFEINSA-LLS 157 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFAD 188 R V + + + ++ + A+ Sbjct: 158 R---CRVFLLKPLTPEAIATLLTRALAE 182 >gi|309777016|ref|ZP_07671985.1| replicative DNA helicase [Erysipelotrichaceae bacterium 3_1_53] gi|308915226|gb|EFP60997.1| replicative DNA helicase [Erysipelotrichaceae bacterium 3_1_53] Length = 280 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 25/141 (17%), Positives = 54/141 (38%), Gaps = 35/141 (24%) Query: 50 EQAVRLIDSWPS-WPSRVVIL-VGPSGSGKSCLANIWSDKSR-----------STRFSNI 96 A R ++ W + L G G+GKS LA ++ + +++ Sbjct: 111 GIARRYVEHWEDMRADNIGCLFWGGVGTGKSYLAGCIANALMEKEIPVHMTNFALILNDL 170 Query: 97 AKSLDSI-----LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFP 148 A S ++ + ++++D + + Q+F++I+S ++ L++T Sbjct: 171 AASFENRNEYISRLCRYPLLIIDDFGMERGTEYGLEQVFNVIDSRYRSGKPLIVTT---- 226 Query: 149 VSWGVCLPDLC-------SRL 162 + L DL SR+ Sbjct: 227 ---NLTLDDLRNPEDTAHSRI 244 >gi|238881210|gb|EEQ44848.1| 26S protease regulatory subunit 6A [Candida albicans WO-1] Length = 430 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 63/178 (35%), Gaps = 40/178 (22%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + ++ GP G+GK+ LA + +S +T A L + I ++ Sbjct: 209 PPKGALMYGPPGTGKTLLARACAAQSGATFLKLAAPQLVQMFIGDGAKLVRDAFALAKEK 268 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151 ++++D + + ++N + D ++ A + Sbjct: 269 APTIIFIDELDAIGTKRFDSDKSGDREVQRTMLELLNQLDGFGSDDRVKVLAATNRVDTL 328 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 L L S RL ++ LP ++ E V+ R++ D + + + RS Sbjct: 329 DPAL--LRSGRLD--RKIEFPLPSEEARESVLKIHA--RKLHCDNNSVNW--RELARS 378 >gi|37519811|ref|NP_923188.1| cell division control protein CDC48-like protein [Gloeobacter violaceus PCC 7421] gi|35210802|dbj|BAC88183.1| gll0242 [Gloeobacter violaceus PCC 7421] Length = 574 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 60/161 (37%), Gaps = 39/161 (24%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRKP-- 110 R ++L GP G+GK+ LA + ++R+ + +++ + R+ Sbjct: 355 RGILLYGPPGTGKTLLARAVASQARANFIAVKGPELLSRWVGASEQAVRELFAKARQAAP 414 Query: 111 --VLLEDIDLLDFND--------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID L QL ++ + + + LL+ A P Sbjct: 415 CVIFVDEIDTLAPERGSGGADSGVSDRVVGQLLTELDGLEEAGAVLLIGATNRPEVLDPA 474 Query: 155 LPDLCSRLKAA---TVVKISLPDDDFLEKVIVKMFADRQIF 192 L L+A +KI LPD + ++ +R + Sbjct: 475 L------LRAGRLDLQLKIDLPDRESRLAILRVHNRERPLA 509 >gi|303234078|ref|ZP_07320727.1| recombination factor protein RarA [Finegoldia magna BVS033A4] gi|302495003|gb|EFL54760.1| recombination factor protein RarA [Finegoldia magna BVS033A4] Length = 431 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 69/181 (38%), Gaps = 31/181 (17%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLL 119 +I GP G+GK+ LA I S+++ S SN K + ++ + + + + + Sbjct: 53 PSMIFYGPPGTGKTTLAEIISNQTNSLFERLSAISNGVKDIREVISTAKTNLSMYNKKTV 112 Query: 120 DF-NDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 F ++ H N + + L+ A T + V L SR ++++ Sbjct: 113 LFIDEI---HRFNKSQQDALLGYVEDGTITLIGATTENPFFEVNKA-LLSR---CQIIEL 165 Query: 171 SLPDDDFLEKVIV------KMFADRQIFIDKKLAAYIVQRME---RS-LVFAEKLVDKMD 220 D+ + +I K + I ID+K +V RS L E ++ D Sbjct: 166 KPLTDNDIRNIIENALTEDKKLKEMNIQIDEKAIDVLVNSANGDARSALNALEIAIESTD 225 Query: 221 N 221 Sbjct: 226 Q 226 >gi|302380490|ref|ZP_07268955.1| recombination factor protein RarA [Finegoldia magna ACS-171-V-Col3] gi|302311433|gb|EFK93449.1| recombination factor protein RarA [Finegoldia magna ACS-171-V-Col3] Length = 431 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 69/181 (38%), Gaps = 31/181 (17%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLL 119 +I GP G+GK+ LA I S+++ S SN K + ++ + + + + + Sbjct: 53 PSMIFYGPPGTGKTTLAEIISNQTNSLFERLSAISNGVKDIREVISTAKTNLSMYNKKTV 112 Query: 120 DF-NDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 F ++ H N + + L+ A T + V L SR ++++ Sbjct: 113 LFIDEI---HRFNKSQQDALLGYVEDGTITLIGATTENPFFEVNKA-LLSR---CQIIEL 165 Query: 171 SLPDDDFLEKVIV------KMFADRQIFIDKKLAAYIVQRME---RS-LVFAEKLVDKMD 220 D+ + +I K + I ID+K +V RS L E ++ D Sbjct: 166 KPLTDNDIRNIIENALTEDKKLKEMNIQIDEKAIDVLVNSANGDARSALNALEIAIESTD 225 Query: 221 N 221 Sbjct: 226 Q 226 >gi|221480890|gb|EEE19311.1| cell division protein, putative [Toxoplasma gondii GT1] Length = 963 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 23/162 (14%), Positives = 57/162 (35%), Gaps = 35/162 (21%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILIDTR 108 R V+L G SG GK+ LA +++ + +N+ + + + Sbjct: 409 RGVLLHGSSGCGKTLLAKAIANECGANFLTVNGPEVMSKLAGESEANLRRIFEEAAALSP 468 Query: 109 KPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156 + +++ID + QL +++ + +++ A P L Sbjct: 469 CLLFIDEIDSIASKREKTQGEVEKRIVAQLLTLMDGVSSDKGIVVLAATNRPNQLDPALR 528 Query: 157 DLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 R + ++I +PD+ +++ K + + + Sbjct: 529 ----RFGRFDREIEIPIPDEKGRTEILKKKAEK--MNLGPDV 564 >gi|156373935|ref|XP_001629565.1| predicted protein [Nematostella vectensis] gi|156216568|gb|EDO37502.1| predicted protein [Nematostella vectensis] Length = 428 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 28/201 (13%), Positives = 67/201 (33%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V+L GP G+GK+ LA + +++ST L + I ++ Sbjct: 208 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 267 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151 ++++D + + + ++N + + ++ A Sbjct: 268 APAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSHHDIKVIAATNRVDIL 327 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ PD + +++ R++ + + + R Sbjct: 328 DPAL--LRSGRLD--RKIEFPNPDQEARARILQ--IHSRKMNVSGDVNFDELSRCTDDFN 381 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A ++ ++ T Sbjct: 382 GAMLKAVCVEAGMIALRREAT 402 >gi|37523635|ref|NP_927012.1| putative transposase [Gloeobacter violaceus PCC 7421] gi|35214640|dbj|BAC92007.1| gll4066 [Gloeobacter violaceus PCC 7421] Length = 253 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 58/144 (40%), Gaps = 25/144 (17%) Query: 32 FPRCLGISRDDLLVHSAI-EQAVRLIDSWPSWPSRV--VILVGPSGSGKSCLA------- 81 P +S D + + + V+ + + +W R V+L GPSG GK+ LA Sbjct: 65 LPVGKSLSGFDFAACTKLERRRVQQLAADSTWVKRAENVLLFGPSGVGKTHLAAGVGLAM 124 Query: 82 -------NIWSDKSRSTRFS----NIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ---LF 127 ++ + N+A + +D V+++DI + ++++ LF Sbjct: 125 VEKGIPVRYFTATNLVQLLQQAKLNLALEKQLVRLDHYPVVVIDDIGYVKRSESESSVLF 184 Query: 128 HIINSIHQYDSSLLMTARTFPVSW 151 +I + SL++T+ W Sbjct: 185 ELI-AHRYERHSLVITSNHPFRDW 207 >gi|150016409|ref|YP_001308663.1| Holliday junction DNA helicase RuvB [Clostridium beijerinckii NCIMB 8052] gi|189046025|sp|A6LTM7|RUVB_CLOB8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|149902874|gb|ABR33707.1| Holliday junction DNA helicase RuvB [Clostridium beijerinckii NCIMB 8052] Length = 347 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 3/70 (4%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +L GP G GK+ LANI + + +++ L+D D+L ++ Sbjct: 55 TLLYGPPGLGKTTLANIIAKEMGGDLKITSGPAIERAGELAAILTTLKDYDVLFIDEI-- 112 Query: 127 FHIINSIHQY 136 H +N + Sbjct: 113 -HRLNRNVEE 121 >gi|114047507|ref|YP_738057.1| recombination factor protein RarA [Shewanella sp. MR-7] gi|113888949|gb|ABI43000.1| Recombination protein MgsA [Shewanella sp. MR-7] Length = 443 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 36/177 (20%), Positives = 64/177 (36%), Gaps = 34/177 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 ++L GP G+GK+ LA + + S + R S + + I +E + + Sbjct: 52 MMLWGPPGTGKTTLAELIAHYSNAHVERISAVTSGVKDIR------AAIEQAQAVAQSRR 105 Query: 125 Q---LF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 Q LF H N + + + + A T S+ + L SR A V Sbjct: 106 QRTLLFVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEINNA-LLSR---ARVYL 161 Query: 170 ISLPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 I D + +I + D RQ+ + + + Q + A L++ M Sbjct: 162 IKRLSQDEIVHIITQALTDAERGLGQRQLIMPTDVLNKLAQLCDGDARKALNLLELM 218 >gi|290980685|ref|XP_002673062.1| predicted protein [Naegleria gruberi] gi|284086643|gb|EFC40318.1| predicted protein [Naegleria gruberi] Length = 822 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 65/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP GSGK+ +A ++++ + F +N+ K+ + + Sbjct: 249 PPRGILMYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESEANLRKAFEEAEKN 308 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ ++ + ++M A P S Sbjct: 309 APAIIFIDEIDSIAPKREKANGEVERRIVSQLLTLMDGLNSRSNVIVMAATNRPNSIDEA 368 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L R + + I +PD+ +V+ + + +D + Sbjct: 369 LR----RFGRFDREIDIGVPDEIGRLEVL--RIHTKNMKLDDDV 406 >gi|255761622|gb|ACU32854.1| apicoplast cell division cycle 48 protein [Toxoplasma gondii] Length = 1044 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 23/162 (14%), Positives = 57/162 (35%), Gaps = 35/162 (21%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILIDTR 108 R V+L G SG GK+ LA +++ + +N+ + + + Sbjct: 490 RGVLLHGSSGCGKTLLAKAIANECGANFLTVNGPEVMSKLAGESEANLRRIFEEAAALSP 549 Query: 109 KPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156 + +++ID + QL +++ + +++ A P L Sbjct: 550 CLLFIDEIDSIASKREKTQGEVEKRIVAQLLTLMDGVSSDKGIVVLAATNRPNQLDPALR 609 Query: 157 DLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 R + ++I +PD+ +++ K + + + Sbjct: 610 ----RFGRFDREIEIPIPDEKGRTEILKKKAEK--MNLGPDV 645 >gi|119590121|gb|EAW69715.1| nuclear VCP-like, isoform CRA_b [Homo sapiens] Length = 687 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 59/168 (35%), Gaps = 42/168 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P R V+L GP G GK+ LA+ + + A + + + + Sbjct: 128 PPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFEQAVSN 187 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151 + +++ID + QL + N++ L++ A P S Sbjct: 188 APCIIFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSL 247 Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKK 196 L +A + + +PD+ E+++ + R++ + + Sbjct: 248 DPALR------RAGRFDREICLGIPDEASRERILQTLC--RKLRLPQA 287 >gi|148550570|ref|YP_001260009.1| IstB ATP binding domain-containing protein [Sphingomonas wittichii RW1] gi|148553832|ref|YP_001261414.1| IstB ATP binding domain-containing protein [Sphingomonas wittichii RW1] gi|148555379|ref|YP_001262961.1| IstB ATP binding domain-containing protein [Sphingomonas wittichii RW1] gi|148555958|ref|YP_001263540.1| IstB ATP binding domain-containing protein [Sphingomonas wittichii RW1] gi|148556293|ref|YP_001263875.1| IstB ATP binding domain-containing protein [Sphingomonas wittichii RW1] gi|148556386|ref|YP_001263968.1| IstB ATP binding domain-containing protein [Sphingomonas wittichii RW1] gi|148499022|gb|ABQ67276.1| IstB domain protein ATP-binding protein [Sphingomonas wittichii RW1] gi|148500569|gb|ABQ68823.1| IstB domain protein ATP-binding protein [Sphingomonas wittichii RW1] gi|148501148|gb|ABQ69402.1| IstB domain protein ATP-binding protein [Sphingomonas wittichii RW1] gi|148501483|gb|ABQ69737.1| IstB domain protein ATP-binding protein [Sphingomonas wittichii RW1] gi|148501576|gb|ABQ69830.1| IstB domain protein ATP-binding protein [Sphingomonas wittichii RW1] gi|148502989|gb|ABQ71242.1| IstB domain protein ATP-binding protein [Sphingomonas wittichii RW1] Length = 242 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 47/114 (41%), Gaps = 22/114 (19%) Query: 65 RVVILVGPSGSGKSCLANIWSD---KSRSTR-----FSNIAKSLDSILIDTRKPVL--LE 114 R ++LVG +G+GK+ LA + +S + + + + I + L Sbjct: 99 RNIVLVGGTGTGKTHLAIAIAANVVRSGARGRYFNTVDLVTRLEEEARIGKSGALAAQLS 158 Query: 115 DIDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 +DL+ ++ LFH+I+ +++ +S+++T W D Sbjct: 159 RLDLIVLDELGYLPFARSGGQLLFHLISKLYE-QTSVIITTNLAFGEWPTVFGD 211 >gi|304384951|ref|ZP_07367297.1| replication-associated recombination protein A [Pediococcus acidilactici DSM 20284] gi|304329145|gb|EFL96365.1| replication-associated recombination protein A [Pediococcus acidilactici DSM 20284] Length = 439 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 72/189 (38%), Gaps = 34/189 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I GP G GK+ LA I ++K+ S FS + S+ I ++ ++D T Sbjct: 53 MIFWGPPGVGKTTLAQIIANKTNSKFLTFSAVDSSISKIKKIMQQA----ELDREIGQKT 108 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +F H N + S +L+ A T S+ V L SR V + Sbjct: 109 LVFVDEIHRFNKSQQDAFLPYVEKGSIILIGATTENPSFEVNSA-LLSR---CKVFVLKP 164 Query: 173 PDDDFLEKVIVKMFADRQ------IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 + L K+I + ++ Q I I++ I + A K ++ ++ L+ Sbjct: 165 LEQGDLVKLIQNVISNSQAFDNQKIKIEENQINAIANFAD---GDARKALNILEMAVLNG 221 Query: 227 GM---GITR 232 IT Sbjct: 222 KKQGEAITI 230 >gi|19173090|ref|NP_597641.1| 26S PROTEASOME REGULATORY SUBUNIT 7 [Encephalitozoon cuniculi GB-M1] gi|19168757|emb|CAD26276.1| 26S PROTEASOME REGULATORY SUBUNIT 7 [Encephalitozoon cuniculi GB-M1] Length = 415 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 53/170 (31%), Gaps = 48/170 (28%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE-------- 114 P + V+L GP G+GK+ LA ++++ + I L + ++ E Sbjct: 192 PPKGVLLYGPPGTGKTLLARAVANRTNACFIRVIGSELVQKYVGEGARMVREIFAMAKGK 251 Query: 115 ------------------DIDLLDFNDTQLFHIINSIH----QYDSSLLMTARTF----P 148 D D + + +IN + + + +LM P Sbjct: 252 KACIIFFDEVDAFGGTRFDDDDDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDP 311 Query: 149 VSW---------GVCLPDLCSR---LKAATVVKISLPDDDFLEKVIVKMF 186 LPDL R L+ K D D +I ++ Sbjct: 312 ALLRPGRLDRKVEFGLPDLEGRTSILR--IHAKTMSVDKDIRFDLIARLC 359 >gi|186682508|ref|YP_001865704.1| ATPase [Nostoc punctiforme PCC 73102] gi|186464960|gb|ACC80761.1| AAA ATPase, central domain protein [Nostoc punctiforme PCC 73102] Length = 607 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 60/163 (36%), Gaps = 39/163 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRKP 110 P R ++L G G+GK+ LA + ++R+ + +++ + R+ Sbjct: 385 PPRGILLWGSPGTGKTLLAKAIASQARANFIAVNGPELLSRWVGAAEQAVRELFRKARQA 444 Query: 111 ----VLLEDIDLLDFND--------------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 V +++ID L QL ++ +H+ LL+ A P + Sbjct: 445 APCVVFIDEIDTLAPARGRFTGDSGVSDRVVGQLLTELDGLHECPKVLLVGATNRPEALD 504 Query: 153 VCLPDLCSRLKAA---TVVKISLPDDDFLEKVIVKMFADRQIF 192 L L+A +KI LPD ++ DR + Sbjct: 505 PAL------LRAGRLDLQIKIDLPDRASRLAILRVHNLDRPLV 541 >gi|328473159|gb|EGF44007.1| recombination factor protein RarA [Vibrio parahaemolyticus 10329] Length = 449 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 43/199 (21%), Positives = 68/199 (34%), Gaps = 38/199 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G+GK+ LA + ++ + + A + I E+ + T L Sbjct: 54 MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAREN--KMAGRRTIL 111 Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172 F H N Q D ++ T L SR A V K++ Sbjct: 112 FVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKLTS 165 Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIV------QRMERSLVFAEKLVDKM 219 D + + + + D R + + + RM SL + E L D Sbjct: 166 LDKEEISLALNQAINDKERGLGDTPANFADNVLDRLAELVNGDARM--SLNYLELLYDMA 223 Query: 220 DNLALSRGMGITRSLAAEV 238 ++ A IT L AEV Sbjct: 224 EDNA-QGEKEITLKLLAEV 241 >gi|302816419|ref|XP_002989888.1| hypothetical protein SELMODRAFT_269585 [Selaginella moellendorffii] gi|300142199|gb|EFJ08901.1| hypothetical protein SELMODRAFT_269585 [Selaginella moellendorffii] Length = 805 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 64/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP GSGK+ +A ++++ + F SN+ K+ + + Sbjct: 243 PPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 302 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + ++M A P S Sbjct: 303 APSIIFIDEIDSIAPKREKTQGEVERRIVSQLLTLMDGLKSRSHVIVMGATNRPNSID-- 360 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PD+ +V+ + + + + + Sbjct: 361 -PALR-RFGRFDREIDIGVPDEVGRLEVL--RIHTKNMKLAEDV 400 Score = 39.4 bits (91), Expect = 0.41, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 516 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDVFDKA 572 >gi|325856575|ref|ZP_08172242.1| ATPase, AAA family [Prevotella denticola CRIS 18C-A] gi|325483423|gb|EGC86397.1| ATPase, AAA family [Prevotella denticola CRIS 18C-A] Length = 406 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 73/194 (37%), Gaps = 27/194 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRF-------------SNIAKSLDSILIDTRKPVL- 112 IL GP G GK+ LA I + + + + I ++ + ++ P+L Sbjct: 41 FILWGPPGVGKTTLAQIIAHRLETPFYTLSAVTSGVKDVRDVIERAQNGRFFNSASPILF 100 Query: 113 LEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++I + L + + L+ A T S+ V P L SR + + Sbjct: 101 IDEIHRFSKSQQDSLL----GAVEKGTVTLIGATTENPSFEVIRP-LLSR---CQLYVLK 152 Query: 172 LPD-DDFLEKVIVKMFADRQI---FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 + DD L + + D ++ ID +++ +++ + + A Sbjct: 153 PLEKDDLLTLLQRAVAEDTELKKRHIDLHETDALLRYSGGDARKLLNILELIVDAAPDGT 212 Query: 228 MGITRSLAAEVLKE 241 + +T + E L++ Sbjct: 213 VTVTDRIVEERLQQ 226 >gi|331213377|ref|XP_003319370.1| protein SAV [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309298360|gb|EFP74951.1| protein SAV [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 718 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 27/52 (51%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + ++L GP G+GK+ LA+I + + ST + ++ S + + E Sbjct: 203 PPKGILLYGPPGTGKTHLASIIAKSTNSTLLTLSTATISSAYHGEGEQKIFE 254 >gi|302384865|ref|YP_003820687.1| ATPase AAA [Clostridium saccharolyticum WM1] gi|302195493|gb|ADL03064.1| AAA ATPase central domain protein [Clostridium saccharolyticum WM1] Length = 439 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 63/174 (36%), Gaps = 28/174 (16%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD--FN 122 VI GP G+GK+ LA + ++ + + A ++ ++ E D L Sbjct: 53 GSVIFYGPPGTGKTTLARVIANTTSADFKQINATVAGKKDMEE---IVKEAKDSLGMYGK 109 Query: 123 DTQLF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 T LF H N + + +L+ A T + V L SR + V ++ Sbjct: 110 KTILFVDEIHRFNKGQQDYLLPFVEDGTLILIGATTENPFFEVNGA-LLSR---SRVFEL 165 Query: 171 SLPDDDFLEKVIVKMFADR--QI-----FIDKKLAAYIVQRMERSLVFAEKLVD 217 + + + ++I + DR + ID+ ++ A V+ Sbjct: 166 KPLEKEDIRELIRRAVYDRDKGMGSYHAVIDEDAEEFLADVSNGDARAALNAVE 219 >gi|254166928|ref|ZP_04873782.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469] gi|289596082|ref|YP_003482778.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469] gi|197624538|gb|EDY37099.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469] gi|289533869|gb|ADD08216.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469] Length = 727 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 18/121 (14%), Positives = 45/121 (37%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + V+L GP G+GK+ LA ++++ + N+ + + Sbjct: 215 PPKGVLLYGPPGTGKTLLAKAVANEANAHFIYLSGPEIMSKFYGQSEENLREIFKEAQDN 274 Query: 107 TRKPVLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + ++ QL +++ + +++ A P + Sbjct: 275 APSIIFIDEIDSIAPKRDEVSGEVERRVVAQLLALMDGLESRGKVVVIGATNRPNALDPA 334 Query: 155 L 155 L Sbjct: 335 L 335 Score = 39.0 bits (90), Expect = 0.55, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 16/70 (22%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILIDTRKP 110 ++L GP G+GK+ LA + +S + S + + Sbjct: 492 ILLYGPPGTGKTLLAKAVATESEANFISVKGPEFLSKWVGESEKAVREVFRKARQAAPAV 551 Query: 111 VLLEDIDLLD 120 + +++ID + Sbjct: 552 IFIDEIDAIA 561 >gi|120597946|ref|YP_962520.1| IstB ATP binding domain-containing protein [Shewanella sp. W3-18-1] gi|120558039|gb|ABM23966.1| IstB domain protein ATP-binding protein [Shewanella sp. W3-18-1] Length = 251 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 58/164 (35%), Gaps = 27/164 (16%) Query: 17 KNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--VILVGPSG 74 K Q +E QL P D +V + + + W ++ V+L G SG Sbjct: 55 KRLQRYTREAQLP---PGKPLSQFDFSVVEGINKNQLIALADQQQWVNQAENVLLFGASG 111 Query: 75 SGKSCLA------------------NIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 GK+ LA +S + + + +D ++++DI Sbjct: 112 VGKTHLACGIGYALLAQGVRVKFTSATHLAQSLQQAKAALVLTDVLARMDKYTVLIIDDI 171 Query: 117 DLL--DFNDTQ-LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 + +TQ LF +I ++ SL++T+ W D Sbjct: 172 GYVKKSSQETQVLFELIAHRYETG-SLIITSNQPFSGWDQIFDD 214 >gi|258539421|ref|YP_003173920.1| AAA family ATPase [Lactobacillus rhamnosus Lc 705] gi|257151097|emb|CAR90069.1| ATPase, AAA family [Lactobacillus rhamnosus Lc 705] Length = 431 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 31/189 (16%), Positives = 63/189 (33%), Gaps = 30/189 (15%) Query: 67 VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKP-------VLLEDID 117 +IL GP G+GK+ +A+ + K + + + I + +LL++I Sbjct: 42 MILYGPPGTGKTSIASAIAGSTKYAFRILNAATDTKKDLQIVAEEAKMSGTVILLLDEIH 101 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 LD + + +L+ A T + P + SR + ++ Sbjct: 102 RLDKTKQDFLLP---LLESGRIVLIGATTENPYMNIQ-PAIRSR---TQIFQVKPLTPTD 154 Query: 178 LEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG- 229 + I + AD Q+ + + Y+ ++ ++ LS Sbjct: 155 ISTAIDRALADNKRGLGKYQVDLTPEARDYLTHTTN---GDLRAALNGLELAVLSTPAKS 211 Query: 230 ---ITRSLA 235 IT L Sbjct: 212 DGTITIDLT 220 >gi|294501359|ref|YP_003565059.1| ATPase [Bacillus megaterium QM B1551] gi|294351296|gb|ADE71625.1| ATPase, AAA family [Bacillus megaterium QM B1551] Length = 425 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 30/198 (15%), Positives = 67/198 (33%), Gaps = 35/198 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST---------RFSNIAKSLDSILIDTRKPVLLEDID 117 +IL GP G GK+ +A + + + ++ + + + +LL+++ Sbjct: 43 MILYGPPGVGKTTIATAIAKTTNTAFRQLNAVVNNKKDMEIVAEEAKMSGKVILLLDEVH 102 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 LD + +L+ T + P + SR + ++ Sbjct: 103 RLDKAKQDFLLPY---LENGMIILIGATTSNPYHAIN---PAIRSR---CQIFELKSLTP 153 Query: 176 DFLEKVIVKM-------FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228 D ++ + + F DR+I ++ + ++ ++ LS G Sbjct: 154 DDIKIALTRALNDSSNGFGDRKIIVEDDAMNHFANSCN---GDVRSALNALELAVLSTGE 210 Query: 229 G-----ITRSLAAEVLKE 241 IT A E L++ Sbjct: 211 SDGKIVITLQTAEECLQQ 228 >gi|118444048|ref|YP_877906.1| Holliday junction DNA helicase RuvB [Clostridium novyi NT] gi|166231486|sp|A0PZV4|RUVB_CLONN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|118134504|gb|ABK61548.1| Holliday junction DNA helicase RuvB [Clostridium novyi NT] Length = 337 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 3/70 (4%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G GK+ LANI + + T +++ L D D+L ++ Sbjct: 56 VLLYGPPGLGKTTLANIIAREMGGTLKVTSGPAIERPGDMAAILTSLNDYDVLFIDEI-- 113 Query: 127 FHIINSIHQY 136 H +N + Sbjct: 114 -HRLNRTVEE 122 >gi|159149474|gb|ABW91184.1| CDC48/PAS1/SEC28 family ATPase [Nosema bombycis] Length = 640 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 64/168 (38%), Gaps = 37/168 (22%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP G+GK+ +A ++++ + + +N+ K+ + + Sbjct: 98 PPKGILLYGPPGTGKTLIAKAVANETGAFIYLINGPEIMSKMAGESENNLRKAFEEAERN 157 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID L QL +++ D +++ A P S Sbjct: 158 KPAIIFMDEIDALAPKREKTQGEVERRIVSQLLTLMDGSKSRDGVIVLAATNRPNSID-- 215 Query: 155 LPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199 P L + ++I +PDD +++ + ++ D L Sbjct: 216 -PALR---RYGRFDREIEIGVPDDTGRLEILRIHTKNMRMAEDVDLVE 259 Score = 41.7 bits (97), Expect = 0.098, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 54/159 (33%), Gaps = 47/159 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 PS+ V+ GP G GK+ LA + + ++ SN+ + D Sbjct: 371 PSKGVLFYGPPGCGKTLLAKAVATECQANFISIKGPELLTMWVGESESNVRELFDRARSA 430 Query: 107 TRKPVLLEDIDLLDFND--------------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 + ++ID + + QL ++ ++Q + ++ A P Sbjct: 431 APCVLFFDEIDSVAKSRGASAGDSGSGDRVLNQLLTEMDGMNQKKNVFVIGATNRPDQLD 490 Query: 153 --------------VCLPDLCSR---LKAATVVKISLPD 174 + LPDL SR LKAA PD Sbjct: 491 TAIMRPGRLDQLVYIPLPDLDSRLSILKAALRKTPLSPD 529 >gi|296229991|ref|XP_002760518.1| PREDICTED: nuclear valosin-containing protein-like isoform 1 [Callithrix jacchus] Length = 856 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 59/168 (35%), Gaps = 42/168 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P R V+L GP G GK+ LA+ + + A + + + + Sbjct: 297 PPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFEQAVSN 356 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151 + +++ID + QL + N++ L++ A P S Sbjct: 357 APCIIFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVASTARVLVIGATNRPDSL 416 Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKK 196 L +A + + +PD+ E+++ + R++ + + Sbjct: 417 DPALR------RAGRFDREICLGIPDEASRERILQTLC--RKLRLPQA 456 >gi|295706706|ref|YP_003599781.1| ATPase, AAA family [Bacillus megaterium DSM 319] gi|294804365|gb|ADF41431.1| ATPase, AAA family [Bacillus megaterium DSM 319] Length = 425 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 66/198 (33%), Gaps = 35/198 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST---------RFSNIAKSLDSILIDTRKPVLLEDID 117 +IL GP G GK+ +A + + + ++ + + + +LL+++ Sbjct: 43 MILYGPPGVGKTTIATAIAKTTNTAFRQLNAVVNNKKDMEIVAEEAKMSGKVILLLDEVH 102 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISL--P 173 LD + +L+ T + P + SR + ++ P Sbjct: 103 RLDKAKQDFLLPY---LENGMIILIGATTSNPYHAIN---PAIRSR---CQIFELKSLTP 153 Query: 174 DD---DFLEKVIVKM--FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228 DD + F DR+I ++ + ++ ++ LS G Sbjct: 154 DDIKMALTRALNDSSNGFGDRKIIVEDDAMNHFANSCN---GDVRSALNALELAVLSTGE 210 Query: 229 G-----ITRSLAAEVLKE 241 IT A E L++ Sbjct: 211 SDGKIVITLQTAEECLQQ 228 >gi|302389240|ref|YP_003825061.1| Recombination protein MgsA [Thermosediminibacter oceani DSM 16646] gi|302199868|gb|ADL07438.1| Recombination protein MgsA [Thermosediminibacter oceani DSM 16646] Length = 446 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 50/142 (35%), Gaps = 26/142 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRF-------------SNIAKSLDSILIDTRKPVLL 113 +IL GP G GK+ LA I ++ +R+ + ++ + R V + Sbjct: 56 MILWGPPGVGKTTLAMIIAEMTRARFVTFSAVLSGIKEVKEVMKEAQERRRYGQRTLVFI 115 Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKIS 171 ++I + + F + +L+ T L SR + V ++ Sbjct: 116 DEIHRFNKSQQDAFLPY---VEKGDIILIGATTENPSFELNSA---LLSR---SKVFVMN 166 Query: 172 LPDDDFLEKVIVKMFAD--RQI 191 D L ++ + D R + Sbjct: 167 PLSPDDLMVLLKRALRDEERGL 188 >gi|95007473|emb|CAJ20695.1| transitional endoplasmic reticulum ATPase [Toxoplasma gondii RH] Length = 792 Score = 45.1 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 23/162 (14%), Positives = 57/162 (35%), Gaps = 35/162 (21%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILIDTR 108 R V+L G SG GK+ LA +++ + +N+ + + + Sbjct: 235 RGVLLHGSSGCGKTLLAKAIANECGANFLTVNGPEVMSKLAGESEANLRRIFEEAAALSP 294 Query: 109 KPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156 + +++ID + QL +++ + +++ A P L Sbjct: 295 CLLFIDEIDSIASKREKTQGEVEKRIVAQLLTLMDGVSSDKGIVVLAATNRPNQLDPALR 354 Query: 157 DLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 R + ++I +PD+ +++ K + + + Sbjct: 355 ----RFGRFDREIEIPIPDEKGRTEILKKKAEK--MNLGPDV 390 >gi|253682370|ref|ZP_04863167.1| holliday junction DNA helicase RuvB [Clostridium botulinum D str. 1873] gi|253562082|gb|EES91534.1| holliday junction DNA helicase RuvB [Clostridium botulinum D str. 1873] Length = 337 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 3/70 (4%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G GK+ LANI + + T +++ L D D+L ++ Sbjct: 56 VLLYGPPGLGKTTLANIIAREMGGTLKVTSGPAIERAGDMAAILTSLNDYDVLFIDEI-- 113 Query: 127 FHIINSIHQY 136 H +N + Sbjct: 114 -HRLNRTVEE 122 >gi|263098|gb|AAB24840.1| Tat binding protein 1, TBP-1=transcriptional activator [human, Peptide, 439 aa] Length = 439 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 23/167 (13%), Positives = 64/167 (38%), Gaps = 38/167 (22%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 219 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 278 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + + ++N + Q ++ + ++ A Sbjct: 279 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 338 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L L S RL ++ +P+++ +++ R++ + + Sbjct: 339 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDV 379 >gi|331269239|ref|YP_004395731.1| Holliday junction DNA helicase RuvB [Clostridium botulinum BKT015925] gi|329125789|gb|AEB75734.1| Holliday junction DNA helicase RuvB [Clostridium botulinum BKT015925] Length = 337 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 3/70 (4%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G GK+ LANI + + T +++ L D D+L ++ Sbjct: 56 VLLYGPPGLGKTTLANIIAKEMGGTLKVTSGPAIERAGDMAAILTSLNDYDVLFIDEI-- 113 Query: 127 FHIINSIHQY 136 H +N + Sbjct: 114 -HRLNRTVEE 122 >gi|83949758|ref|ZP_00958491.1| ATPase, AAA family protein [Roseovarius nubinhibens ISM] gi|83837657|gb|EAP76953.1| ATPase, AAA family protein [Roseovarius nubinhibens ISM] Length = 437 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 34/195 (17%), Positives = 67/195 (34%), Gaps = 37/195 (18%) Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDID 117 + +IL GP G GK+ +A + + ++ + S I + + + + Sbjct: 52 ENGSLGSLILWGPPGVGKTTIARLLAAETDLHFVQISAIFTGVPELRKVFEEA----RMR 107 Query: 118 LLDFNDTQLF----HIINSIHQYD-------SSLLM---TARTFPVSWGVCLPDLCSRLK 163 + T LF H N Q ++L+ T L SR Sbjct: 108 HGNGRGTLLFVDEIHRFNKAQQDGFLPHMEDGTILLVGATTENPSFELNAA---LLSR-- 162 Query: 164 AATVVKISLPDDDFLEKVIVK--MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD---- 217 A V+ + + LE+++ + DR + + + ++ + LV+ Sbjct: 163 -AQVLVLERLANRDLERLVQRAEKMMDRALPLTGEAREVLLDMADGDGRALLNLVEQVMA 221 Query: 218 -----KMDNLALSRG 227 K+D ALS+ Sbjct: 222 WKSAQKLDPEALSKR 236 >gi|168187974|ref|ZP_02622609.1| holliday junction DNA helicase RuvB [Clostridium botulinum C str. Eklund] gi|169294185|gb|EDS76318.1| holliday junction DNA helicase RuvB [Clostridium botulinum C str. Eklund] Length = 337 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 3/70 (4%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G GK+ LANI + + T +++ L D D+L ++ Sbjct: 56 VLLYGPPGLGKTTLANIIAREMGGTLKVTSGPAIERPGDMAAILTSLNDYDVLFIDEI-- 113 Query: 127 FHIINSIHQY 136 H +N + Sbjct: 114 -HRLNRTVEE 122 >gi|319426954|gb|ADV55028.1| IstB domain protein ATP-binding protein [Shewanella putrefaciens 200] Length = 252 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 49/119 (41%), Gaps = 22/119 (18%) Query: 61 SW--PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL-------------- 104 W + V+L+GP+G+GK+ LA +++++ + + + ++L Sbjct: 96 DWIRAHQHVLLIGPTGTGKTTLACAFANEAIQQQIPVLFFRMANLLLQLVAARNENTLNK 155 Query: 105 ----IDTRKPVLLEDI--DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 I ++L+D L+ + LF + SL++T++ +W D Sbjct: 156 LARKIARAPLLVLDDWGNALMSSEERHLFFELIEARDQQGSLMITSQYPVTTWHETFQD 214 >gi|302770437|ref|XP_002968637.1| hypothetical protein SELMODRAFT_145748 [Selaginella moellendorffii] gi|300163142|gb|EFJ29753.1| hypothetical protein SELMODRAFT_145748 [Selaginella moellendorffii] Length = 809 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 63/164 (38%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP GSGK+ +A ++++ + F SN+ K+ + + Sbjct: 247 PPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 306 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + ++M A P S Sbjct: 307 APSIIFIDEIDSIAPKREKTQGEVERRIVSQLLTLMDGLKSRSHVIVMGATNRPNSIDPA 366 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L R + + I +PD+ +V+ + + + + + Sbjct: 367 LR----RFGRFDREIDIGVPDEVGRLEVL--RIHTKNMKLAEDV 404 Score = 39.4 bits (91), Expect = 0.43, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 520 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDVFDKA 576 >gi|255634909|gb|ACU17813.1| unknown [Glycine max] Length = 392 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 51/150 (34%), Gaps = 35/150 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN----------------IAKSLDSILID 106 P + V+L GP G+GK+ LA + +S + + +A Sbjct: 118 PQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKL 177 Query: 107 TRKPVLLEDIDLLDFNDTQLFH--IINS------------IHQYDSSLLMTARTFPVSWG 152 + ++++D H ++N Q +++TA P Sbjct: 178 QPAIIFIDEVDSFLGQRRTTDHEALLNMKTEFMALWDGFTTDQNAQVMVLTATNRPSELD 237 Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 + L RL A +I +PD +++ Sbjct: 238 EAI--LR-RLPQA--FEIGVPDQRERTEIL 262 >gi|238018960|ref|ZP_04599386.1| hypothetical protein VEIDISOL_00820 [Veillonella dispar ATCC 17748] gi|237864444|gb|EEP65734.1| hypothetical protein VEIDISOL_00820 [Veillonella dispar ATCC 17748] Length = 433 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 61/157 (38%), Gaps = 30/157 (19%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 ++ GP G+GK+ LA I + S S + + ++ + + R ++ED + Sbjct: 51 PSMLFYGPCGTGKTTLAGIIAKVSNSHFVN--LNATNAGIGELRN--IIEDARKRVRSLQ 106 Query: 125 Q---LF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 Q LF H N + + +L+ A T + V P L SRL+ ++ Sbjct: 107 QRTILFLDEIHRFNKSQQDVLLPCVEDGTIILIGATTENPFFEVNRP-LLSRLR---LIT 162 Query: 170 ISLPDDDFLEKVIVKMFAD-------RQIFIDKKLAA 199 + + +++ + D R + + ++ Sbjct: 163 LEALTPKAIGQILRRAITDEEVGLGKRHLQVTDEVLE 199 >gi|168334208|ref|ZP_02692411.1| AAA ATPase central domain protein [Epulopiscium sp. 'N.t. morphotype B'] Length = 420 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 28/209 (13%), Positives = 73/209 (34%), Gaps = 51/209 (24%) Query: 67 VILVGPSGSGKSCLANIWSDKS-------------RSTRFSNIAKSLDSILIDTRKPVLL 113 +I GP GSGK+ +A + + + ++ + + DS+ ++ ++ Sbjct: 53 MIFYGPPGSGKTTIAKVIAKTTTSHFETLNATTSGKADILRLVQNAKDSLATSSKHTIIF 112 Query: 114 EDIDLLDFNDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 ++ H N + + +L+ A T + V L SR + Sbjct: 113 -------IDEI---HRFNKAQQDALLPYAEDGTIILIGATTENPYFEVNRA-LLSR---S 158 Query: 166 TVVKISLPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218 + ++ ++ + ++ + D + + A +I A ++ Sbjct: 159 LIFELHSLTNENIITILQRAITDTDKGLGVYNAILTDQAAEFIATHA---AGDARAALNA 215 Query: 219 MDNLALSRGM------GITRSLAAEVLKE 241 ++ L+ IT +A+E +++ Sbjct: 216 LELATLTTERSADGKINITAQVASECMQK 244 >gi|170036949|ref|XP_001846323.1| spermatogenesis associated factor [Culex quinquefasciatus] gi|167879951|gb|EDS43334.1| spermatogenesis associated factor [Culex quinquefasciatus] Length = 797 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 37/205 (18%), Positives = 79/205 (38%), Gaps = 60/205 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 228 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 287 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148 + + +++ID + QL +++ + + ++M A P Sbjct: 288 SPAIIFIDEIDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSAHVIVMAATNRPNSIDPA 347 Query: 149 --------VSWGVCLPDLCSRLKAATVVKIS-----LPDDDFLEKVIVKMFADRQIFIDK 195 + +PD RL+ V++I L DD LE++ A+ + Sbjct: 348 LRRFGRFDREIDIGIPDATGRLE---VLRIHTKNMKLADDVDLEQI----AAESHGHVGA 400 Query: 196 KLAAYIVQRMERSLVFAEKLVDKMD 220 LA+ S +++ +KMD Sbjct: 401 DLASLC------SEAALQQIREKMD 419 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 501 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKA 557 >gi|168058314|ref|XP_001781154.1| predicted protein [Physcomitrella patens subsp. patens] gi|162667391|gb|EDQ54022.1| predicted protein [Physcomitrella patens subsp. patens] Length = 815 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 70/191 (36%), Gaps = 42/191 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP GSGK+ +A ++++ + F SN+ K+ + + Sbjct: 247 PPKGILLFGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 306 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + ++M A P S Sbjct: 307 APSIIFIDEIDSIAPKREKTQGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPA 366 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213 L R + + I +PD+ +V+ + + + + + +ER Sbjct: 367 LR----RFGRFDREIDIGVPDEVGRLEVV--RIHTKNMKLAEDV------NLERIAHDTH 414 Query: 214 KLVDKMDNLAL 224 V D AL Sbjct: 415 GFVGA-DLAAL 424 Score = 39.4 bits (91), Expect = 0.44, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 520 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDVFDKA 576 >gi|160947516|ref|ZP_02094683.1| hypothetical protein PEPMIC_01450 [Parvimonas micra ATCC 33270] gi|158446650|gb|EDP23645.1| hypothetical protein PEPMIC_01450 [Parvimonas micra ATCC 33270] Length = 428 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 43/237 (18%), Positives = 89/237 (37%), Gaps = 35/237 (14%) Query: 1 MNLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWP 60 M+L K +Y+ F K + + + L F I +D+++ +I + Sbjct: 1 MDLFKMNYNLF-SKLSKPLAERMRPKDLSF------FIGQDNII--KNNSVLKNMIKNNR 51 Query: 61 SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120 +IL GP GSGK+ LANI S + + A + + I + +++ + + Sbjct: 52 ---FSSMILYGPPGSGKTSLANIISSTTDNYFVKISAVTSGTKEIKEIIELAKDNLSMYN 108 Query: 121 FNDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168 T LF H N + + + + A T ++ V L SR V Sbjct: 109 KR-TILFIDEIHRFNKMQQDYLLEFVEKGDIIFIGATTENPAYEVNNA-LLSR---VIVF 163 Query: 169 KISLPDDDFLEKVIVK------MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 ++ + L+ +I +++I + +Y+++ A ++ + Sbjct: 164 ELQALSFENLKDIIDNAILNDEFLKNKKISYTEDGISYLIKMSNGDARTALNYLELI 220 >gi|68060549|ref|XP_672260.1| 26S protease subunit regulatory subunit 6a [Plasmodium berghei strain ANKA] gi|56489176|emb|CAH99786.1| 26S protease subunit regulatory subunit 6a, putative [Plasmodium berghei] Length = 379 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 23/153 (15%), Positives = 58/153 (37%), Gaps = 36/153 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++ +T L + I ++ Sbjct: 228 PPKGVLMHGPPGTGKTLLARACASQTNATFLKLAGPQLVQMFIGDGAKMVRDAFNLAKEK 287 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + ++N + D ++ ++ A P + Sbjct: 288 APAIIFIDELDAIGTKRFDSELSGDREVQRTMLELLNQLDGFSTDETVKVIAATNRPDTL 347 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIV 183 L L S RL +++ P+++ +++ Sbjct: 348 DPAL--LRSGRLD--RKIELPHPNEESRARILQ 376 >gi|330466933|ref|YP_004404676.1| recombination factor protein RarA [Verrucosispora maris AB-18-032] gi|328809904|gb|AEB44076.1| recombination factor protein RarA [Verrucosispora maris AB-18-032] Length = 503 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 66/172 (38%), Gaps = 28/172 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLD----SILIDTRK----------PVL 112 VIL GP GSGK+ +A++ + + + A S +IDT + + Sbjct: 74 VILWGPPGSGKTTIAHLVAAATDRRFVAMSALSAGVKDVRAVIDTARRQRRSGGPPTVLF 133 Query: 113 LEDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 ++++ L + + + L+ A T + V P L SR ++ + Sbjct: 134 IDEVHRFSKTQQDSLL----AAVEDRTVTLLAATTENPYFSVISP-LLSR---CVLLTLQ 185 Query: 172 LPDDDFLEKVIVKMFAD-RQ----IFIDKKLAAYIVQRMERSLVFAEKLVDK 218 DD + ++ + D R + +D + ++V+ + A ++ Sbjct: 186 PLDDAAVRGLLRRAMTDERGLAGALTLDSEAEDHLVRLAGGDVRKALTALEA 237 >gi|325113217|ref|YP_004277163.1| putative transposase-associated ATP-binding protein [Acidiphilium multivorum AIU301] gi|325052684|dbj|BAJ83021.1| putative transposase-associated ATP-binding protein [Acidiphilium multivorum AIU301] Length = 269 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 64/166 (38%), Gaps = 29/166 (17%) Query: 19 DQPKNKEEQLFFS--FPRCLGISRDDL----LVHSAIEQAVRLIDSWPSWPSRVVILVGP 72 D+ + + E+ P + D ++ A A+ ++W + ++ GP Sbjct: 56 DRERRRIERHLLEAHLPIGKTLDNFDFNAVPVISKAHITALASGNAWIEHGANCLV-FGP 114 Query: 73 SGSGKSCLAN-------------IWSDKSR-----STRFSNIAKSLDSILIDTRKPVLLE 114 G GKS LA+ +++ + ++A +D ++L+ Sbjct: 115 PGVGKSHLASGLGRALIEAGFRVLFARTTDLVQRLQVARQDLALEAAITKLDRYHLLILD 174 Query: 115 DIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 DI + + + LF +I+ +++ S+++TA W PD Sbjct: 175 DISYVTKDQAETSVLFELISRRYEH-RSIMITANQAFGEWNKIFPD 219 >gi|161506521|ref|YP_001573642.1| IstB ATP binding domain-containing protein [Burkholderia multivorans ATCC 17616] gi|161522745|ref|YP_001585674.1| IstB ATP binding domain-containing protein [Burkholderia multivorans ATCC 17616] gi|189348401|ref|YP_001941597.1| ISBmu7a transposase [Burkholderia multivorans ATCC 17616] gi|189348816|ref|YP_001942011.1| ISBmu7a transposase [Burkholderia multivorans ATCC 17616] gi|160346298|gb|ABX19382.1| IstB domain protein ATP-binding protein [Burkholderia multivorans ATCC 17616] gi|160346759|gb|ABX19842.1| IstB domain protein ATP-binding protein [Burkholderia multivorans ATCC 17616] gi|189338539|dbj|BAG47607.1| ISBmu7a transposase [Burkholderia multivorans ATCC 17616] gi|189338954|dbj|BAG48021.1| ISBmu7a transposase [Burkholderia multivorans ATCC 17616] Length = 283 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 63/164 (38%), Gaps = 37/164 (22%) Query: 30 FSFPRCLGISRDDLLVHSAIEQAVRLIDSW-PSWPSRVVILVGPSGSGKSCLANIW---- 84 F F +V A A+ D W + + +IL+GPSG GKS L++ Sbjct: 78 FDFDAVP-------MVSRAHVSALCAGDGWLRNGTN--LILLGPSGGGKSHLSSAIGLSL 128 Query: 85 ------------SDKSRSTRFSNIAKSLDSIL--IDTRKPVLLEDIDLLDFNDTQ---LF 127 +D + + + +L+S + +D V+L+D + + + LF Sbjct: 129 LEKGWKVLFARTTDLVQRLQVARRELALESAINRLDRFDLVVLDDFAYVSKDQAETSVLF 188 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +I S SL +TA W PD +A TV + Sbjct: 189 ELI-SARYERRSLCITANQPFGEWDKVFPD-----RAMTVAAVD 226 >gi|257439846|ref|ZP_05615601.1| replication-associated recombination protein A [Faecalibacterium prausnitzii A2-165] gi|257197755|gb|EEU96039.1| replication-associated recombination protein A [Faecalibacterium prausnitzii A2-165] Length = 424 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 38/202 (18%), Positives = 74/202 (36%), Gaps = 35/202 (17%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTR------------FSNIAKSLDSILIDTRKPVL 112 +I GPSG+GK+ +A I ++ S T + K + ++ + Sbjct: 40 PNMIFYGPSGTGKTTVARIIAENSGMTLHKLNGTSCGTGDIKAVLKDIGTLAGAGGILLY 99 Query: 113 LEDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK-- 169 L++I L+ L I + + L+ + T + + L SR TV + Sbjct: 100 LDEIQYLNKKQQQSLLECI----EDGTVTLIASTTENPYFYIYNA-LLSR---CTVFEFK 151 Query: 170 -ISLPD-DDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 ++ D + L + K+ I ++ AY+ E + K + +D + Sbjct: 152 SLTAADVEQGLRNALKKLSESEGTPIRMEDDACAYLA---ESAGGDLRKALGCLDFAVTA 208 Query: 226 -----RGMGITRSLAAEVLKET 242 G IT + +V + T Sbjct: 209 AAPEPEGKHITLDMIQQVTRRT 230 >gi|255932063|ref|XP_002557588.1| Pc12g07530 [Penicillium chrysogenum Wisconsin 54-1255] gi|211582207|emb|CAP80380.1| Pc12g07530 [Penicillium chrysogenum Wisconsin 54-1255] Length = 956 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 69/196 (35%), Gaps = 43/196 (21%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK--------------- 109 ++L GP G+GK+ LA + +S +T + + + + Sbjct: 685 PGLLLYGPPGTGKTLLAKAVARESGATVLEVSGSEVYDMYVGEGEKNVKAIFTLAKKLSP 744 Query: 110 -PVLLEDIDLL----DFNDTQLFH--IINSI-HQYDS-----SLLMTARTFPVSWGVCLP 156 V +++ D + ++ H +IN ++D + +M A P L Sbjct: 745 CVVFIDEADAIFCSRTGASSRTSHRELINQFLREWDGMNDLSAFIMVATNRP----FDLD 800 Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---------R 207 D + + + LP ++ E V+ + Q+ LA + +R Sbjct: 801 DAVL-RRLPRRLLVDLPTEEDREAVLRIHLKEEQLEPSVDLAE-LARRTPLYSGSDLKNL 858 Query: 208 SLVFAEKLVDKMDNLA 223 S+ A V + ++ A Sbjct: 859 SVAAALACVREENDAA 874 >gi|325205964|gb|ADZ01417.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis M04-240196] Length = 436 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 20/134 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G GK+ LA I + + A S + D R+ + +I L T L Sbjct: 50 MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIREAIDKAEIALQQGRATIL 107 Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 F H N Q D+ L L+T A T S+ V P L SR A V + Sbjct: 108 FVDEVHRFNKAQQ-DAFLPHVESGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQSL 162 Query: 174 DDDFLEKVIVKMFA 187 D L+K+I K+ A Sbjct: 163 SSDDLKKLIAKVLA 176 >gi|302866794|ref|YP_003835431.1| AAA ATPase central domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|302569653|gb|ADL45855.1| AAA ATPase central domain protein [Micromonospora aurantiaca ATCC 27029] Length = 532 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 62/157 (39%), Gaps = 28/157 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL---DFND 123 VIL GP GSGK+ +A++ + + + A + + ++E Sbjct: 107 VILWGPPGSGKTTIAHLVARATDRRFVAMSALTAGVKDVRA----VIETARRQRRSGGPP 162 Query: 124 TQLF----HIIN--------SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 T LF H + + + + L+ A T + V P L SR ++ + Sbjct: 163 TVLFIDEVHRFSKTQQDSLLAAVEDRTVTLLAATTENPYFSVISP-LLSR---CVLLTLQ 218 Query: 172 LPDDDFLEKVIVKMFAD-RQ----IFIDKKLAAYIVQ 203 DDD + ++ + AD R + + ++ ++V+ Sbjct: 219 ALDDDDVRGLLRRAVADERGLGGALVLAEEAEDHLVR 255 >gi|297584737|ref|YP_003700517.1| AAA ATPase central domain-containing protein [Bacillus selenitireducens MLS10] gi|297143194|gb|ADH99951.1| AAA ATPase central domain protein [Bacillus selenitireducens MLS10] Length = 443 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 71/180 (39%), Gaps = 31/180 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I GP G+GK+ LA + ++ + + + + + + + + D D T Sbjct: 54 MIFHGPPGTGKTTLAKVIANTTAAAFEQLNAVTAGIKDVREMVSQAKSRLDYDHKR---T 110 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + + +L+ A T + V P L SR + + ++ L Sbjct: 111 VLFIDEIHRFNKGQQDALLPHVEDGTVILIGATTENPMFEVN-PALISR---SRLFRLEL 166 Query: 173 PDDDFLEKVIV-------KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 D + KV+ + F D Q+ ++ +I ++ + A ++ ++ L+ Sbjct: 167 LSDGDMRKVLEHALNDAKRGFGDYQVSFSEEAFNHI---IDVAGGDARTALNALELAVLT 223 >gi|119500324|ref|XP_001266919.1| AAA family ATPase, putative [Neosartorya fischeri NRRL 181] gi|119415084|gb|EAW25022.1| AAA family ATPase, putative [Neosartorya fischeri NRRL 181] Length = 539 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 34/219 (15%), Positives = 72/219 (32%), Gaps = 37/219 (16%) Query: 44 LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS--------- 94 LV LI+ +IL G +G+GK+ +A + + S Sbjct: 139 LVGP-NGVLRGLIEQDR---VPSMILWGHAGTGKTTIARVIASMVGSRFVEINSTSTGVA 194 Query: 95 ----NIAKSLDSILIDTRKPVLL-EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPV 149 A++ + + RK ++ ++I + +F + L+ A T Sbjct: 195 ECKKIFAEARSELGLTGRKTIVFCDEIHRFSKSQQDVFL---GPVESGQITLIGATTENP 251 Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ------IFIDKKLAAYIVQ 203 S+ V L SR +S D+ + ++ + +D +L Y+ + Sbjct: 252 SFKVQNA-LLSR---CRTFTLSKLSDEDVRSILDRALRVEGPNYSPSSIVDDELIEYLAR 307 Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + A ++ ++ + E LK + Sbjct: 308 FSD---GDARTSLNLLELAMDLSKRP---RMTKEELKRS 340 >gi|56479430|ref|YP_161019.1| recombination factor protein RarA [Aromatoleum aromaticum EbN1] gi|56315473|emb|CAI10118.1| predicted ATPase related to the uncharacterized helicase subunit of the holliday junction resolvase [Aromatoleum aromaticum EbN1] Length = 446 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 39/188 (20%), Positives = 68/188 (36%), Gaps = 21/188 (11%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA + + + + A S + D R+ V + T L Sbjct: 52 MILWGPPGVGKTTLARLMAQAFDAEFIALSAVF--SGVKDIREAVAHAQTEKARGRHTIL 109 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N + L+ A T S+ V L SR A V + D Sbjct: 110 FVDEVHRFNKAQQDAFLPYVEQGVVTLIGATTENPSFEVNSA-LLSR---AAVYVLEPLD 165 Query: 175 DDFLEKVIV--KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG-MGIT 231 D+ ++ ++ A Q+ ++ + L++++ A + G + +T Sbjct: 166 DEAQGELFERARLLACPQLEFAPAARERMIGFADGDARRLMNLIEQVQVAAETAGVVTVT 225 Query: 232 RSLAAEVL 239 E L Sbjct: 226 PEFVDEAL 233 >gi|325204241|gb|ADY99694.1| magnesium chelatase, subunit ChlI family [Neisseria meningitidis M01-240355] Length = 436 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 51/195 (26%), Positives = 78/195 (40%), Gaps = 26/195 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G GK+ LA I + + A S + D R + +I L T L Sbjct: 50 MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIRGAIDKAEIALQQGRATIL 107 Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 F H N Q D+ L L+T A T S+ V P L SR A V + Sbjct: 108 FVDEVHRFNKAQQ-DAFLPYVESGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQSL 162 Query: 174 DDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 D L+K+I K+ A R I+ +V + L++++ A +R + Sbjct: 163 SSDGLKKLIAKVLALPEYRDFTIEADAQELLVNTADGDARRLLNLLEQLLRAADTRRLK- 221 Query: 231 TRSLAAEVLKETQQC 245 +L AE L ++ Sbjct: 222 --TLTAEFLADSLGA 234 >gi|295695736|ref|YP_003588974.1| AAA ATPase central domain protein [Bacillus tusciae DSM 2912] gi|295411338|gb|ADG05830.1| AAA ATPase central domain protein [Bacillus tusciae DSM 2912] Length = 472 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 60/162 (37%), Gaps = 30/162 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI-DLLD--FND 123 VI GP G GK+ LA + + +RS + A + + +++D D L Sbjct: 55 VIFYGPPGVGKTTLARLIAGYTRSVFVTLSAVTAGIADLRR----VVDDARDRLGMYGQK 110 Query: 124 TQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 T LF H N + +L+ A T + V L SR + V + Sbjct: 111 TTLFIDEIHRFNKAQQDALLPHMEDGLVILIGATTENPYFEVNKA-LLSR---SLVFALR 166 Query: 172 LPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRME 206 + L+ + + AD R + + ++ + V+ E Sbjct: 167 PLTPEALKTIARRAIADKERGLGTMPLEVHEEALDHWVRYCE 208 >gi|261403255|ref|YP_003247479.1| AAA ATPase central domain protein [Methanocaldococcus vulcanius M7] gi|261370248|gb|ACX72997.1| AAA ATPase central domain protein [Methanocaldococcus vulcanius M7] Length = 371 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 25/170 (14%), Positives = 57/170 (33%), Gaps = 34/170 (20%) Query: 61 SWPSRVVILVGPSGSGKSCLANIWSDKSR------------STRFSNIAKSLDSILIDTR 108 W + V+ GP G+GK+ +A + ++ + +K + + Sbjct: 151 DWAPKNVLFYGPPGTGKTLMARALATETNSSFILVKAPELIGEHVGDASKMIRELYQKAS 210 Query: 109 K----PVLLEDIDLLDFNDT-------------QLFHIINSIHQYDSSLLMTARTFPVSW 151 + V ++++D + + L ++ I + + + + A P Sbjct: 211 ENAPCVVFIDELDAIGLSREYQSLRGDVSEVVNALLTELDGIKENEGVVTIAATNNPAML 270 Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 + SR + K+ PDD K++ I I L ++ Sbjct: 271 DSAI---RSRFEEEIEFKL--PDDKERLKIMELYAKKMPIPIKANLKEFV 315 >gi|163752528|ref|ZP_02159714.1| ATPase, AAA family protein [Shewanella benthica KT99] gi|161327583|gb|EDP98781.1| ATPase, AAA family protein [Shewanella benthica KT99] Length = 443 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 37/195 (18%), Positives = 70/195 (35%), Gaps = 33/195 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 ++ GP G+GK+ LA + + + + R S + + I +++ T Sbjct: 52 MLFWGPPGTGKTTLAELVAHYANAHVERISAVTSGVKEIRTAIEHA---KNVAESRGQRT 108 Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N Q D +++ T L SR A V I Sbjct: 109 LLFVDEVHRFNKSQQDAFLPFIEDGTVIFVGATTENPSFEINNA---LLSR---ARVYLI 162 Query: 171 SLPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 +D + +++ + D RQ+ I +A + + A L++ M ++ Sbjct: 163 KRLTNDEIIQIVRQALIDNDRGLGKRQLKIPDAVAEKLANVCDGDARKALNLIELMSDM- 221 Query: 224 LSRGMGITRSLAAEV 238 ++ G T + EV Sbjct: 222 IADGESFTEQMIIEV 236 >gi|156538268|ref|XP_001602992.1| PREDICTED: similar to werner helicase interacting protein [Nasonia vitripennis] Length = 522 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 54/150 (36%), Gaps = 26/150 (17%) Query: 65 RVVILVGPSGSGKSCLANIWSDK-----SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 +IL GP G GK+ LAN+ ++ R+ ++ ++ I D + + + +L Sbjct: 146 PNIILWGPPGCGKTSLANVIANTCQHCPGGKYRYVKLSAAMSGI-SDVKDAITIASNELK 204 Query: 120 DFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLKAA 165 T +F H N + + +L+ T S L SR Sbjct: 205 FGRRTVMFMDEIHRFNKTQQDTFLPHIESGTIILIGATTENPSFSLNAA---LLSR---C 258 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDK 195 V+ + + L +++++ + Sbjct: 259 RVIVLEKLTIENLTEILIRAIKAAGGAVHD 288 >gi|156974088|ref|YP_001444995.1| recombination factor protein RarA [Vibrio harveyi ATCC BAA-1116] gi|156525682|gb|ABU70768.1| hypothetical protein VIBHAR_01799 [Vibrio harveyi ATCC BAA-1116] Length = 451 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 43/197 (21%), Positives = 72/197 (36%), Gaps = 34/197 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G+GK+ LA + ++ + + A + I E+ + T L Sbjct: 56 MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAREN--KMAGRRTIL 113 Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172 F H N Q D ++ T L SR A V K++ Sbjct: 114 FVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKLTS 167 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER-----------SLVFAEKLVDKMDN 221 D D + + + +D++ + A ++ ++R SL + E L D ++ Sbjct: 168 LDKDEISLALNQAISDKERGLGNTPAHFVDNVLDRLAELVNGDARMSLNYLELLYDMAED 227 Query: 222 LALSRGMGITRSLAAEV 238 A IT L AEV Sbjct: 228 NAKGEK-EITLKLLAEV 243 >gi|300856545|ref|YP_003781529.1| Holliday junction DNA helicase [Clostridium ljungdahlii DSM 13528] gi|300436660|gb|ADK16427.1| Holliday junction DNA helicase [Clostridium ljungdahlii DSM 13528] Length = 348 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 13/94 (13%) Query: 43 LLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 + + + +D V+L GP G GK+ LANI + + +++ Sbjct: 42 FIEAARNRK--EALDH--------VLLYGPPGLGKTTLANIIAVEMGGNLKITSGPAIER 91 Query: 103 ILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY 136 L D+D+L ++ H +N + Sbjct: 92 AGDLAAILTSLNDMDVLFIDEI---HRLNRSVEE 122 >gi|229552006|ref|ZP_04440731.1| crossover junction endodeoxyribonuclease [Lactobacillus rhamnosus LMS2-1] gi|229314583|gb|EEN80556.1| crossover junction endodeoxyribonuclease [Lactobacillus rhamnosus LMS2-1] Length = 462 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 32/189 (16%), Positives = 65/189 (34%), Gaps = 30/189 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117 +IL GP G+GK+ +A+ + ++ + R N A + + +LL++I Sbjct: 73 MILYGPPGTGKTSIASAIAGSTKYAFRILNAATDTKKDLQIVAEEAKMSGTVILLLDEIH 132 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 LD + + +L+ A T + P + SR + ++ Sbjct: 133 RLDKTKQDFLLP---LLESGRIVLIGATTENPYMNIQ-PAIRSR---TQIFQVKPLTPTD 185 Query: 178 LEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG- 229 + I + AD Q+ + + Y+ ++ ++ LS Sbjct: 186 ISTAIDRALADNKRGLGKYQVDLTPEARDYLTHTTN---GDLRAALNGLELAVLSTPAKS 242 Query: 230 ---ITRSLA 235 IT L Sbjct: 243 DGTITIDLT 251 >gi|224003485|ref|XP_002291414.1| 26S proteasome ATPase regulatory subunit [Thalassiosira pseudonana CCMP1335] gi|220973190|gb|EED91521.1| 26S proteasome ATPase regulatory subunit [Thalassiosira pseudonana CCMP1335] Length = 427 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 27/189 (14%), Positives = 65/189 (34%), Gaps = 44/189 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V+L GP G+GK+ LA ++++ + L + I ++ Sbjct: 201 PPKGVLLHGPPGTGKTLLARACANQTNAVFLKLAGPQLVQMFIGDGAKLIRDAFELAKEK 260 Query: 113 ------------LEDIDLL-----DFNDT----------QLFHIINSIHQYDSSLLMTAR 145 ++++D + + + +L ++ D ++ A Sbjct: 261 IADGTSNGAIIFIDELDAIGTKRFGGDQSGDREVQRTMLELLSQLDGFGSNDMIKVIAAT 320 Query: 146 TFPVSWGVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 P L L S RL +++ P ++ K++ R++ + ++ + R Sbjct: 321 NRPDVLDPAL--LRSGRLD--RKIELPHPSEEARSKIM--RIHSRKMNVSPEVVFEELAR 374 Query: 205 MERSLVFAE 213 A+ Sbjct: 375 SCEDFNGAQ 383 >gi|220908139|ref|YP_002483450.1| recombination factor protein RarA/unknown domain fusion protein [Cyanothece sp. PCC 7425] gi|219864750|gb|ACL45089.1| AAA ATPase central domain protein [Cyanothece sp. PCC 7425] Length = 731 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 63/170 (37%), Gaps = 25/170 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +I GP G+GK+ LA + ++ +++ + A + + + + R V T L Sbjct: 48 LIFYGPPGTGKTTLARMIANTTQAYFIAINA--VLAGVKEIRAAVETAQTHQQLRQRTIL 105 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N + + +L+ A T + V L SR + + ++ Sbjct: 106 FVDEVHRFNKAQQDALLPWVENGTLILIGATTENPYFEVNKA-LVSR---SRIFQLKPLS 161 Query: 175 DDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVD 217 + L +V + DR ++ ++ A++V ++ Sbjct: 162 EQDLYQVAFQALHDRERGYGNLKVRVEDDALAHLVNVANGDARALLNALE 211 >gi|156743910|ref|YP_001434039.1| IstB ATP binding domain-containing protein [Roseiflexus castenholzii DSM 13941] gi|156235238|gb|ABU60021.1| IstB domain protein ATP-binding protein [Roseiflexus castenholzii DSM 13941] Length = 263 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 48/136 (35%), Gaps = 31/136 (22%) Query: 52 AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------- 104 A+ W +IL G G GK+ LA +++ + + + +L Sbjct: 100 ALEYARQPRGW----LILFGNYGCGKTHLAAAIANQLIQNHYRVLFAVVPDLLDHLRSTF 155 Query: 105 --------------IDTRKPVLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTARTF 147 I ++L+D+ + + +LF IIN + + ++T+ Sbjct: 156 GPSSEIEYDQRFEDIREADVLILDDLGTENTTSWAREKLFQIINHRYNFALPTVITSNRK 215 Query: 148 PVSWGVCLPDLCSRLK 163 P P + SR+ Sbjct: 216 PEEID---PRIFSRMS 228 >gi|172058090|ref|YP_001814550.1| ATPase central domain-containing protein [Exiguobacterium sibiricum 255-15] gi|171990611|gb|ACB61533.1| AAA ATPase central domain protein [Exiguobacterium sibiricum 255-15] Length = 437 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 38/174 (21%), Positives = 63/174 (36%), Gaps = 28/174 (16%) Query: 65 RVVILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 VI GP G+GK+ LA + S KS + + + LD + + E D Sbjct: 49 GTVIFYGPPGTGKTTLARVISSYTKSAFEQLNAVTAKLDQLREVLKAA---ESRLQFDQQ 105 Query: 123 DTQLF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 T LF H N + + L+ A T S+ V L SR ATV + Sbjct: 106 KTILFLDEIHRFNKMQQDALLPALEAGTITLIGATTENPSFEVNAA-LLSR---ATVFRF 161 Query: 171 SLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVD 217 P + L V+ + D R + + ++ + V+ + ++ Sbjct: 162 ETPTTEDLRVVLHRTLHDTERGLGKYPITVTEEAVDHYVKLSDGDYRALLNALE 215 >gi|327400638|ref|YP_004341477.1| AAA family ATPase [Archaeoglobus veneficus SNP6] gi|327316146|gb|AEA46762.1| AAA family ATPase, CDC48 subfamily [Archaeoglobus veneficus SNP6] Length = 734 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 63/163 (38%), Gaps = 33/163 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109 P + V+L GP G+GK+ +A +++ + S + L I + ++ Sbjct: 214 PPKGVLLYGPPGTGKTLIAKAVANEVNAHFISISGPEIMSKYYGESEQRLREIFEEAKEN 273 Query: 110 ---PVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + +++ A P + Sbjct: 274 APSIIFIDEIDSIAPKREEVTGEVERRVVAQLLALMDGLEARGDVIVIAATNRPDALD-- 331 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L + ++I +PD + ++++ R + + + + Sbjct: 332 -PALRRPGRFDREIEIGVPDREGRKEILE--IHTRGMPLAEDV 371 Score = 39.4 bits (91), Expect = 0.41, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 21/38 (55%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P + ++L GP G+GK+ LA +++S + S L Sbjct: 489 PPKGILLFGPPGTGKTLLAKAVANESNANFISVKGPEL 526 >gi|326772947|ref|ZP_08232231.1| ATPase, AAA family [Actinomyces viscosus C505] gi|326637579|gb|EGE38481.1| ATPase, AAA family [Actinomyces viscosus C505] Length = 477 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 64/174 (36%), Gaps = 28/174 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSR------STRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120 +IL GP G GK+ +A + +D++ S FS +A L + + + LL Sbjct: 69 IILWGPPGCGKTTIARLLADRTGLVFEQVSATFSGVA-DLRKVFTAAARRREIGQGTLLF 127 Query: 121 FNDTQLFHIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKI 170 ++ H N + + +L+ T L SR V+ + Sbjct: 128 VDEI---HRFNRAQQDSFLPYVEDGTVVLVGATTENPSFELNGA---LLSR---CQVMVL 178 Query: 171 SLPDDDFLEKVIVKMFAD--RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 D+ L +++ + + R + + + ++ + + +V+++ Sbjct: 179 RRLDEAALTELLARAESLTGRSLALTEDARTALLSMADGDGRYLLGMVEQVLAA 232 >gi|218194514|gb|EEC76941.1| hypothetical protein OsI_15211 [Oryza sativa Indica Group] Length = 461 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 26/50 (52%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P + V+L GP G+GK+ +A+ ++ ++ +T L I+ V+ Sbjct: 147 PPKGVLLYGPPGTGKTLVAHAFASQTNATFLKLTGPQLAVIIFRPIAGVV 196 Score = 44.8 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 27/52 (51%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ +A+ ++ ++ +T L LI ++ + Sbjct: 251 PPKGVLLYGPPGTGKTLVAHAFASQTNATFLKLTGPQLAVKLIGEGARLVRD 302 >gi|159029290|emb|CAO90156.1| ftsH3 [Microcystis aeruginosa PCC 7806] Length = 625 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 39/217 (17%), Positives = 77/217 (35%), Gaps = 53/217 (24%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ FS + + Sbjct: 205 VLLVGPPGTGKTLLAKAVAGEAGVAFFSISGSEFVELFVGAGAARVRDLFEQAKKKAPCI 264 Query: 111 VLLEDIDLL----------DFNDT------QLFHIINSIHQYDSSL-LMTARTFPVSWGV 153 + ++++D + ND QL ++ + D+++ ++ A P + Sbjct: 265 IFIDELDAIGKSRANGNFMGGNDEREQTLNQLLTEMDGFNAGDATVIVLAATNRPETLDP 324 Query: 154 CL--------------PDLCSRLKAATVV--KISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L PDL RLK + K+ L D L+++ + + + Sbjct: 325 ALLRPGRFDRQVLVDRPDLAGRLKILEIYAGKVKLGSDADLKQIATRTPGFAGADLANLV 384 Query: 198 --AAYIVQRMERSLVFAEKLVDKMDN--LALSRGMGI 230 AA + R +RS V E + ++ L + + Sbjct: 385 NEAALLAARNQRSTVAQEDFNEAIERVVAGLEKKSRV 421 >gi|103485925|ref|YP_615486.1| IstB-like ATP-binding protein [Sphingopyxis alaskensis RB2256] gi|103486339|ref|YP_615900.1| IstB-like ATP-binding protein [Sphingopyxis alaskensis RB2256] gi|98976002|gb|ABF52153.1| IstB-like ATP-binding protein [Sphingopyxis alaskensis RB2256] gi|98976416|gb|ABF52567.1| IstB-like ATP-binding protein [Sphingopyxis alaskensis RB2256] Length = 242 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 47/114 (41%), Gaps = 22/114 (19%) Query: 65 RVVILVGPSGSGKSCLANIWSD---KSRSTR-----FSNIAKSLDSILIDTRKPVL--LE 114 R ++L+G +G+GK+ LA + ++ + + + + I + L Sbjct: 99 RNIVLIGGTGTGKTHLATAITASVVRAGARGRYFNTVDLVTRLEEEARIGKAGSIAAQLG 158 Query: 115 DIDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 +DL+ ++ LFH+I+ +++ +S+++T W D Sbjct: 159 RLDLVVLDELGYLPFARSGGQLLFHLISKLYE-QTSVIITTNLAFGEWPTVFGD 211 >gi|320101443|ref|YP_004177035.1| proteasome-activating nucleotidase [Desulfurococcus mucosus DSM 2162] gi|319753795|gb|ADV65553.1| Proteasome-activating nucleotidase [Desulfurococcus mucosus DSM 2162] Length = 405 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G GK+ LA + +S +T + + L I ++ E Sbjct: 171 PPKGVLLYGPPGCGKTLLAKAVAAESNATFIAIVGSELVQKFIGEGARIVRE 222 >gi|315605005|ref|ZP_07880059.1| replication-associated recombination protein A [Actinomyces sp. oral taxon 180 str. F0310] gi|315313284|gb|EFU61347.1| replication-associated recombination protein A [Actinomyces sp. oral taxon 180 str. F0310] Length = 457 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 68/183 (37%), Gaps = 27/183 (14%) Query: 54 RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL 113 +I++ + +I GP G GK+ LA + + + ++ A + S + + R+ + Sbjct: 47 SMIEADRT---PSMIFWGPPGVGKTTLARVIARHTHASFIDFSAVT--SGIKEIREVMKQ 101 Query: 114 EDIDLLDFNDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSR 161 D + T +F H N + + +L+ A T S+ V L SR Sbjct: 102 ADAQASMGSRTIVFVDEIHRFNKAQQDAFLPFVEKGAIILIGATTENPSFEVNNA-LLSR 160 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFAD-RQ-----IFIDKKLAAYIVQRMERSLVFAEKL 215 V ++ ++ L ++ + D R + I+ L I + A Sbjct: 161 ---CKVFVLNGLTEEDLVGLMRRALTDPRGFGNQDVRIEDDLLRAIATFADGDARVALST 217 Query: 216 VDK 218 ++ Sbjct: 218 LEM 220 >gi|303388783|ref|XP_003072625.1| 26S proteasome regulatory subunit 7 [Encephalitozoon intestinalis ATCC 50506] gi|303301766|gb|ADM11265.1| 26S proteasome regulatory subunit 7 [Encephalitozoon intestinalis ATCC 50506] Length = 415 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 44/142 (30%), Gaps = 43/142 (30%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE-------- 114 P + V+L GP G+GK+ LA ++++ + I L + ++ E Sbjct: 192 PPKGVLLYGPPGTGKTLLARAVANRTNACFIRVIGSELVQKYVGEGARMVREIFAMAKGK 251 Query: 115 ------------------DIDLLDFNDTQLFHIINSIH----QYDSSLLMTARTF----P 148 D D + + +IN + + + +LM P Sbjct: 252 KACIIFFDEVDAFGGTRFDDDDDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDP 311 Query: 149 VSW---------GVCLPDLCSR 161 LPDL R Sbjct: 312 ALLRPGRLDRKVEFGLPDLEGR 333 >gi|217077920|ref|YP_002335638.1| Holliday junction DNA helicase RuvB [Thermosipho africanus TCF52B] gi|217037775|gb|ACJ76297.1| holliday junction DNA helicase RuvB [Thermosipho africanus TCF52B] Length = 336 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 38/202 (18%), Positives = 77/202 (38%), Gaps = 35/202 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+LVGP G GK+ LA+I S++ + L+ LE D+L ++ Sbjct: 55 VLLVGPPGLGKTTLAHIISNEMGTNIHITSGPILEKQGDVAAILSNLEYGDILFIDEI-- 112 Query: 127 FHIINSIHQYDSSLLMTA----------RTFPVSWGVCLPDL----------CS------ 160 H +N + +L TA P + + + DL S Sbjct: 113 -HRMNKSVEE---ILYTAMEDFQIDILIGKGPSARSIRI-DLQPFTLVGATTRSGLLSSP 167 Query: 161 -RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 R + ++++ + L +I + + ID+ A + +R + A +L+ ++ Sbjct: 168 LRNRFGLIMELDFYTVEELSLIIKRASTVLNVEIDEDAAQLLAKRSRGTPRIALRLLRRV 227 Query: 220 -DNLALSRGMGITRSLAAEVLK 240 D ++ I + E+++ Sbjct: 228 RDMSTVTEKKKIDVMMVEEIME 249 >gi|115938214|ref|XP_795793.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] gi|115967858|ref|XP_001182557.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] Length = 672 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 55/148 (37%), Gaps = 25/148 (16%) Query: 65 RVVILVGPSGSGKSCLANIWSDKS------RSTRFSNIAKSLDSILIDTRKP-------- 110 +I GP G GK+ LAN+ + ++ R FS ++ + Sbjct: 307 PSMIFWGPPGCGKTSLANVIARQAKVRNTHRFITFSATTSNVSDVKSAVEIARNEQRMYR 366 Query: 111 ----VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 + +++I + F + + + +L+ A T S+ V L SR Sbjct: 367 RKTILFIDEIHRFNKTQQDTFLLH---VENGTIILIGATTENPSFRVNSA-LLSR---CR 419 Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFID 194 VV + + + ++ + + Q+ I+ Sbjct: 420 VVVLEKLSPESIMLILERALKEGQVGIE 447 >gi|2160153|gb|AAB60775.1| Similar to Xenopus TER ATPase (gb|X54240) [Arabidopsis thaliana] Length = 330 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 55/153 (35%), Gaps = 48/153 (31%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF--------SNIAKSLDSILIDTRKP---- 110 P ++L GPSG+GK+ LA + ++ + S K + ++ K Sbjct: 94 PCNGILLFGPSGTGKTMLAKAVATEAGANLINMSMSRWFSEGEKYVKAVFSLASKISPSI 153 Query: 111 VLLEDIDLLDFNDTQLFH----------IIN----SIHQYDSSLLMTA------------ 144 + L++++ + H IIN ++ + L++ A Sbjct: 154 IFLDEVES-------MLHRYRLKTKNEFIINWDGLRTNEKERVLVLAATNRPFDLDEAVI 206 Query: 145 RTFPVSWGVCLPDLCSR---LKAATVVKISLPD 174 R P V LPD SR LK + PD Sbjct: 207 RRLPHRLMVGLPDARSRSKILKVILSKEDLSPD 239 >gi|312136660|ref|YP_004003997.1| ATPase AAA [Methanothermus fervidus DSM 2088] gi|311224379|gb|ADP77235.1| AAA ATPase [Methanothermus fervidus DSM 2088] Length = 405 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 8/54 (14%) Query: 39 SRDDLLVHSAIEQAVRLIDSW-PSW----PSRVVILVGPSGSGKSCLANIWSDK 87 D+ + + V + W W P ++LVGP+G GK+ LA I S+K Sbjct: 11 DFDEFI---GNRKVVEEVRKWIRDWKEGKPQPPLLLVGPTGVGKTALAQIISNK 61 >gi|301121358|ref|XP_002908406.1| 26S protease regulatory subunit 6A-A [Phytophthora infestans T30-4] gi|262103437|gb|EEY61489.1| 26S protease regulatory subunit 6A-A [Phytophthora infestans T30-4] Length = 433 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 27/57 (47%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P + V+L GP G+GK+ LA + ++ + A L + I ++ + +L Sbjct: 206 PPKGVLLHGPPGTGKTLLARACAKQTDAIFLKLAAPQLVQMFIGDGAKLVRDAFELA 262 >gi|326427477|gb|EGD73047.1| proteasome 26S subunit [Salpingoeca sp. ATCC 50818] Length = 424 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 26/183 (14%), Positives = 61/183 (33%), Gaps = 38/183 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + ++ GP G+GK+ +A + + +T L + I ++ Sbjct: 204 PPKGCLMYGPPGTGKTLMARACAAQCNATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 263 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151 ++++D + + + ++N + D ++ A Sbjct: 264 SPAIIFIDELDAIGTKRYDSEKAGDREVQRTMLELLNQLDGFSSSDDIKVIAATNRVDIL 323 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ PD+D +++ RQ+ + + + R Sbjct: 324 DPAL--LRSGRLD--RKIEFPHPDEDARARIMQ--IHSRQMNVSPDVNYQELARCTDDFN 377 Query: 211 FAE 213 A+ Sbjct: 378 GAQ 380 >gi|293402112|ref|ZP_06646251.1| ATPase, AAA family [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304504|gb|EFE45754.1| ATPase, AAA family [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 447 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 51/135 (37%), Gaps = 20/135 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125 +I GP G GK+ LA I + K++S A + I K V+ E D F Sbjct: 61 MIFWGPPGVGKTTLARIIAHKTQSRFIDFSAVTSG---IREIKQVMKEASDARAFGKRTI 117 Query: 126 LF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 LF H N + S +L+ A T S+ + L SR V + Sbjct: 118 LFVDEIHRFNKAQQDAFLPYVEKGSIILIGATTENPSFEINSA-LLSR---CKVFVLKGL 173 Query: 174 DDDFLEKVIVKMFAD 188 + L +++ AD Sbjct: 174 ETSDLVELLQHALAD 188 >gi|224418782|ref|ZP_03656788.1| recombination factor protein RarA [Helicobacter canadensis MIT 98-5491] gi|253826695|ref|ZP_04869580.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|313142299|ref|ZP_07804492.1| recombination factor protein RarA [Helicobacter canadensis MIT 98-5491] gi|253510101|gb|EES88760.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|313131330|gb|EFR48947.1| recombination factor protein RarA [Helicobacter canadensis MIT 98-5491] Length = 391 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 71/179 (39%), Gaps = 27/179 (15%) Query: 70 VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI----------DTRKPVLLEDIDLL 119 GP GSGK+ A + +++ +S A S S + + + ++++ L Sbjct: 44 FGPPGSGKTTAARLIANELDYPFYSLNATSFKSEDLRNILKQHQNTLQKPLIFIDEVHRL 103 Query: 120 DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179 + +L I + +L++ A + + + SR + V + + + L Sbjct: 104 NKAQQELLLPI---MENHQALILGASMENPFFSLINA-IRSR---SFVFEFHRLNKEELA 156 Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238 +++ + ++ + ++ + S A +++ +D ALS M +T L + Sbjct: 157 QILEEY------SLEDSIKDFL---IGTSGGDARAMLNLLD-CALSTKMPLTLELLKSI 205 >gi|241955106|ref|XP_002420274.1| 26S proteasome regulatory subunit, putative [Candida dubliniensis CD36] gi|223643615|emb|CAX42498.1| 26S proteasome regulatory subunit, putative [Candida dubliniensis CD36] Length = 430 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 63/178 (35%), Gaps = 40/178 (22%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + ++ GP G+GK+ LA + +S +T A L + I ++ Sbjct: 209 PPKGALMYGPPGTGKTLLARACAAQSGATFLKLAAPQLVQMFIGDGAKLVRDAFALAKEK 268 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151 ++++D + + ++N + D ++ A + Sbjct: 269 APTIIFIDELDAIGTKRFDSDKSGDREVQRTMLELLNQLDGFGSDDRVKVLAATNRVDTL 328 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 L L S RL ++ LP ++ E V+ R++ D + + + RS Sbjct: 329 DPAL--LRSGRLD--RKIEFPLPSEEARESVLKIHA--RKLHCDNNSVNW--RELARS 378 >gi|57641092|ref|YP_183570.1| cell division protein CDC48 [Thermococcus kodakarensis KOD1] gi|57159416|dbj|BAD85346.1| CDC48/VCP homolog, AAA superfamily [Thermococcus kodakarensis KOD1] Length = 796 Score = 45.1 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 23/162 (14%), Positives = 62/162 (38%), Gaps = 33/162 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109 P + V+L GP G+GK+ LA ++++ + + + L + + + Sbjct: 215 PPKGVLLYGPPGTGKTLLAKAVANEANAHFIAINGPEIMSKYYGESEERLREVFKEAEEN 274 Query: 110 ---PVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + +++ A P + Sbjct: 275 APAIIFIDEIDSIAPKREETHGEVEKRVVSQLLTLMDGLKSRGKVIVIGATNRPDAID-- 332 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196 P L + +++ +PD ++++ R + I+ + Sbjct: 333 -PALRRPGRFDREIEVGVPDKQGRKEILQ--IHTRGMPIEPE 371 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 32/215 (14%), Positives = 73/215 (33%), Gaps = 45/215 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106 P + ++L GP G+GK+ LA +++S + + NI + Sbjct: 550 PPKGILLYGPPGTGKTLLAKAVANESEANFIAIKGPEVLSKWVGESEKNIREIFRKARQA 609 Query: 107 TRKPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL ++ I + +++ A P Sbjct: 610 APTVIFIDEIDAIAPRRGTDVNRVTDRLINQLLTEMDGIQENSGVVVIGATNRPDIIDPA 669 Query: 155 LPDLC----SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRME-RS 208 L L RL + + PD+ + I K+ R + + + + ++ E + Sbjct: 670 L--LRPGRFDRL-----ILVPAPDEKARLE-IFKVHTRR-VPLAGDVDLRELAKKTEGYT 720 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 +V + L+ + + +K + Sbjct: 721 GADIAAVVRE--AAMLAMRRALQEGIIRPGMKADE 753 >gi|254426253|ref|ZP_05039969.1| IstB-like ATP binding protein [Synechococcus sp. PCC 7335] gi|196187667|gb|EDX82633.1| IstB-like ATP binding protein [Synechococcus sp. PCC 7335] Length = 174 Score = 45.1 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 44/111 (39%), Gaps = 22/111 (19%) Query: 68 ILVGPSGSGKSCLANIWSDK-----------SRSTRFSNIAKSLDSILIDT-------RK 109 ++ GPSG GK+ L+ + S + + ++ +L+ Sbjct: 17 LIFGPSGVGKTHLSVALARAVIELGKRAKFFSATVLVQQLQQAKLELLLPAMLKKLDRYD 76 Query: 110 PVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 ++++D+ + ++T+ LF +I + SLL+TA W D Sbjct: 77 LLVIDDLGYVKKSETETSVLFELI-AYRYERKSLLITANQPFSQWHNIFAD 126 >gi|169824512|ref|YP_001692123.1| holliday junction DNA helicase [Finegoldia magna ATCC 29328] gi|167831317|dbj|BAG08233.1| holliday junction DNA helicase [Finegoldia magna ATCC 29328] Length = 335 Score = 45.1 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 33/210 (15%), Positives = 70/210 (33%), Gaps = 53/210 (25%) Query: 43 LLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 + + + P +L GP G GK+ LA+I +++ +++ Sbjct: 45 FIEAAKNR----------NEPLDHALLYGPPGLGKTTLAHIIANEMGVNLRVTSGPAIEK 94 Query: 103 ILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ-------YDSSLLMTARTFPVSWGVCL 155 L+ D+L ++ H IN + D +L + P + + + Sbjct: 95 PSDLASILTNLQKDDVLFIDEI---HRINRSVEEILYPAMEDYALDIIVGKGPSARSLRI 151 Query: 156 PDL----------CS-------RLKAATVVKISLPDDDFLEKVIVKMFADRQIFID---- 194 DL S R + ++ + L D + L+K++ + I ID Sbjct: 152 -DLEKFTLIGATTRSGQLTGPLRDRFGVLLNLELYDIESLKKIVTRSAGVLGIGIDEQGA 210 Query: 195 ----------KKLAAYIVQRMERSLVFAEK 214 ++A +++R+ R Sbjct: 211 MEIARRSRGTPRIANRLLKRV-RDYAEVRA 239 >gi|163760830|ref|ZP_02167909.1| hypothetical protein HPDFL43_06787 [Hoeflea phototrophica DFL-43] gi|162281874|gb|EDQ32166.1| hypothetical protein HPDFL43_06787 [Hoeflea phototrophica DFL-43] Length = 436 Score = 45.1 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 64/182 (35%), Gaps = 28/182 (15%) Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDID 117 S +I GP G+GK+ +A + + ++ + S I + + Sbjct: 47 ASGSLGSMIFWGPPGTGKTTVARLLAGETDLAFDQISAIFSGVADLKKVFETA----RAR 102 Query: 118 LLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLK 163 + T LF H N + + +L+ T L SR Sbjct: 103 RMGGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTIVLVGATTENPSFELNAA---LLSR-- 157 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 A V+ D++ LE ++V+ AD + ++ + A +++ + L +++ Sbjct: 158 -ARVLTFRSHDEESLESLLVRAEADTGKPLPLEPEARASLLRMADGDGRAVLTLAEEVWR 216 Query: 222 LA 223 A Sbjct: 217 AA 218 >gi|116073846|ref|ZP_01471108.1| putative ATPase, AAA family protein [Synechococcus sp. RS9916] gi|116069151|gb|EAU74903.1| putative ATPase, AAA family protein [Synechococcus sp. RS9916] Length = 736 Score = 45.1 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 62/170 (36%), Gaps = 24/170 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G GK+ LA I ++ +R+ S A + T + +D T L Sbjct: 57 LLLHGPPGVGKTTLARIIANHTRAHFSSLNAVLAGVKDLRTEVDAARQRLDRHGLR-TIL 115 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H NS + + L+ A T + V L SR + + ++ + Sbjct: 116 FIDEVHRFNSAQQDALLPWVENGTLTLIGATTENPYFEVNKA-LVSR---SRLFRLQTLE 171 Query: 175 DDFLEKVIVKMFA-------DRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 D L ++ + + DR + I + ++V ++ Sbjct: 172 ADDLRDLLSRALSDQERGYGDRLVTITSEAIDHLVDVANGDARSLLNALE 221 >gi|291300813|ref|YP_003512091.1| SARP family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290570033|gb|ADD42998.1| transcriptional regulator, SARP family [Stackebrandtia nassauensis DSM 44728] Length = 1025 Score = 45.1 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 53/161 (32%), Gaps = 31/161 (19%) Query: 3 LMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGIS--RDDLLVHSAIEQAVRLIDSWP 60 ++ D + P + P+ QL P G S RD L Q RL+D Sbjct: 261 ILTSDPTLLTPRPAEPSVPRVVPAQLP---PATAGFSGRRDQL------RQLDRLLDDTE 311 Query: 61 SWPSRVVILVGPSGSGKSCLANIWSDKSR-----STRFSNIAKSLDSILIDTRKPVL--- 112 P+ ++ GP G+GK+ LA W+ + R + ++ L+ + + Sbjct: 312 --PAPTTLITGPPGAGKTTLAVHWAGRHRDRWPDGQLYIDLRGYGPEPLVQPIEALAYFL 369 Query: 113 ------LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTF 147 + + + LF LL+ Sbjct: 370 RAIGLPTDQVPPQQAEASALF----RSRIAGRRLLIVLDNA 406 >gi|19173654|ref|NP_597457.1| TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE [Encephalitozoon cuniculi GB-M1] gi|19170860|emb|CAD26634.1| TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE [Encephalitozoon cuniculi GB-M1] Length = 506 Score = 45.1 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 54/137 (39%), Gaps = 21/137 (15%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN-------IAKSLDSILIDTRKPVLLED 115 P ++L G SG GK+ L N S + + + +S + R +L+ED Sbjct: 70 PPSTLLLHGVSGVGKTFLVNCISQEYKLPIVKACMDSDKELRESFRKSSLLERSIILIED 129 Query: 116 IDLLDFNDTQLF-----HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 ID L +D ++ ++ N S++++ P L + + +VKI Sbjct: 130 IDALGEDDRKVISQLSEYLENH---KGKSIVISTARNPALIHESLN----KFDNSLLVKI 182 Query: 171 SLPDDDFLEKVIVKMFA 187 D+ ++ ++ Sbjct: 183 PTTDE--RRDILARLAE 197 >gi|189220465|ref|YP_001941105.1| ATPase [Methylacidiphilum infernorum V4] gi|189187323|gb|ACD84508.1| ATPase [Methylacidiphilum infernorum V4] Length = 454 Score = 44.8 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 45/215 (20%), Positives = 82/215 (38%), Gaps = 37/215 (17%) Query: 54 RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPV 111 RLID+ + +IL GP G+GK+ LA I + K++S R + + + I + Sbjct: 49 RLIDADR---IQSLILYGPPGTGKTTLAEIIAKKTKSFFARLNAVEAGVSDIRKVIGQAA 105 Query: 112 LLEDIDLLDFNDTQLF----HIINSIHQY--------DSSLLMTARTFPVSWGVCLPDLC 159 L + T LF H N Q L+ A T + + P L Sbjct: 106 L---RWKKEKKHTLLFIDEIHRFNKSQQDVLLPDLETGIIKLIGATTHNPCFYLTAP-LL 161 Query: 160 SRLKAATVVKISLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFA 212 SR + + + LE ++++ D R + I+K+ +++ E A Sbjct: 162 SR---SHLFEFKPLSKQSLETLLLRALTDKERGLGNYEVSIEKEAKEFLLNLCE---GDA 215 Query: 213 EKLVDKMDNL---ALSRGMGITRSLAAEVLKETQQ 244 +L++ ++ +L L E ++ Q Sbjct: 216 RRLLNYLEIAVLSSLQENQPAPVILNIETIQNLVQ 250 >gi|148243814|ref|YP_001220053.1| IstB ATP binding domain-containing protein [Acidiphilium cryptum JF-5] gi|146400377|gb|ABQ28911.1| IstB domain protein ATP-binding protein [Acidiphilium cryptum JF-5] Length = 291 Score = 44.8 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 22/109 (20%) Query: 70 VGPSGSGKSCLANI---------WS-------DKSRSTRFSNIAKSLDSIL--IDTRKPV 111 GP G GKS LA W D + + + +L++ + +D P+ Sbjct: 113 FGPPGGGKSHLAAAIGLALVENGWRVLFTRTSDLVQKLQIARRELALEATIAKLDKFHPL 172 Query: 112 LLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 +L+D+ + + + LF +I S SL++TA WG PD Sbjct: 173 ILDDLAYVTKDQAETSVLFELI-SARYERRSLMITANQPFGEWGKVFPD 220 >gi|296423208|ref|XP_002841147.1| hypothetical protein [Tuber melanosporum Mel28] gi|295637381|emb|CAZ85338.1| unnamed protein product [Tuber melanosporum] Length = 818 Score = 44.8 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 49/121 (40%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 251 PPRGILLYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 310 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + + ++M A P S Sbjct: 311 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNIVVMAATNRPNSIDPA 370 Query: 155 L 155 L Sbjct: 371 L 371 Score = 37.1 bits (85), Expect = 2.4, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 20/38 (52%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 PSR V+ GP G+GK+ LA +++ + S L Sbjct: 525 PSRGVLFYGPPGTGKTLLAKAVANECAANFISVKGPEL 562 >gi|257453133|ref|ZP_05618432.1| Holliday junction DNA helicase RuvB [Fusobacterium sp. 3_1_5R] gi|257467391|ref|ZP_05631702.1| Holliday junction DNA helicase RuvB [Fusobacterium gonidiaformans ATCC 25563] gi|315918521|ref|ZP_07914761.1| holliday junction DNA helicase ruvB [Fusobacterium gonidiaformans ATCC 25563] gi|317059668|ref|ZP_07924153.1| holliday junction DNA helicase ruvB [Fusobacterium sp. 3_1_5R] gi|313685344|gb|EFS22179.1| holliday junction DNA helicase ruvB [Fusobacterium sp. 3_1_5R] gi|313692396|gb|EFS29231.1| holliday junction DNA helicase ruvB [Fusobacterium gonidiaformans ATCC 25563] Length = 334 Score = 44.8 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 80/198 (40%), Gaps = 27/198 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G GK+ LA + +++ + L+ LE+ D+L ++ Sbjct: 55 VLLYGPPGLGKTTLAGVIANEMGANLKITSGPVLEKAGDLAAILTSLEENDVLFIDEI-- 112 Query: 127 FHIINSIHQ-------YDSSL-LMTARTFPVS-WGVCLPD-----------LCS---RLK 163 H +N+ + D L ++ + + LP+ L S R + Sbjct: 113 -HRLNTAVEEILYPAMEDKELDIIIGKGPAARSIRIELPNFTLIGATTRAGLLSAPLRDR 171 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNL 222 K+ ++ ++++I++ +I ++ + A + +R + A +L+ ++ D Sbjct: 172 FGISHKMEYYTEEEVKEIILRGGKILEIEVEGEGAEELAKRSRGTPRIANRLLKRVRDYA 231 Query: 223 ALSRGMGITRSLAAEVLK 240 + IT+ +A + L Sbjct: 232 EIRGKGIITQEIAIQALN 249 >gi|219559489|ref|ZP_03538565.1| transposase [Mycobacterium tuberculosis T17] Length = 255 Score = 44.8 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 26/122 (21%) Query: 51 QAVRLIDSWPSWPSRVVILVGPSGSGKSC----LANIWSDKSRSTRFSNIAKSLDSILID 106 A+R +D+ VIL GP G GK+ L + + + RF+ ++ L + Sbjct: 97 AALRWLDA-----GESVILHGPVGVGKTHVAQALVHAVARRGGDVRFAKTSRMLSDLAGG 151 Query: 107 TRK--------------PVLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPV 149 ++L+D + + L+ +I+ L++T+ P Sbjct: 152 HADRSWGQRIREYTKPLVLILDDFAMREHTAMHADDLYELISDRAITGKPLILTSNRAPN 211 Query: 150 SW 151 +W Sbjct: 212 NW 213 >gi|239616608|ref|YP_002939930.1| AAA ATPase central domain protein [Kosmotoga olearia TBF 19.5.1] gi|239505439|gb|ACR78926.1| AAA ATPase central domain protein [Kosmotoga olearia TBF 19.5.1] Length = 427 Score = 44.8 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 69/181 (38%), Gaps = 25/181 (13%) Query: 67 VILVGPSGSGKSCLANIW---------------SDKSRSTRFSNIAKSLDSILIDTRKPV 111 +IL GP GSGK+ +A + + + I + + + V Sbjct: 40 MILFGPPGSGKTTIARLIKESLADDKYEFVAFSASLQGTADLKKIFERARQLRKYGKHLV 99 Query: 112 L-LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 L +++I L+ +F + + + L+ A T S+ V P L SR + V++ Sbjct: 100 LFVDEIHRLNKTQQDVFLP---VVEDGTVTLIGATTENPSFEVN-PALLSRCR-LLVLRQ 154 Query: 171 SLPDD--DFLEKVIVK--MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 P+D L + + K + I I ++L + + A ++ + A + Sbjct: 155 LSPEDTVQLLHRALEKDERLSSLDIAISEELIRILAENAGGDARVALNFLETLYENAAAM 214 Query: 227 G 227 G Sbjct: 215 G 215 >gi|191638187|ref|YP_001987353.1| Chromosome segregation helicase (Putative) [Lactobacillus casei BL23] gi|190712489|emb|CAQ66495.1| Chromosome segregation helicase (Putative) [Lactobacillus casei BL23] gi|327382219|gb|AEA53695.1| hypothetical protein LC2W_1361 [Lactobacillus casei LC2W] gi|327385416|gb|AEA56890.1| hypothetical protein LCBD_1393 [Lactobacillus casei BD-II] Length = 431 Score = 44.8 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 29/167 (17%), Positives = 58/167 (34%), Gaps = 23/167 (13%) Query: 67 VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKP-------VLLEDID 117 +IL GP G+GK+ +A+ + K + + + I + +LL++I Sbjct: 42 MILYGPPGTGKTSIASAIAGSTKYAFRILNAATDTKKDLQIVAEEAKMSGTVILLLDEIH 101 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 LD + + +L+ A T + P + SR + ++ D Sbjct: 102 RLDKTKQDFLLP---LLESGRIVLIGATTENPYMNIQ-PAIRSR---TQIFQVKPLTPDD 154 Query: 178 LEKVIVKMFA-------DRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 + I + A D Q+ + Y+ L A ++ Sbjct: 155 IASAINRALADHKRGLGDYQVDLQPDALDYLTHATNGDLRSALNGLE 201 >gi|38455496|gb|AAR20845.1| cell division cycle protein 48 [Pseudochlorella sp. CCAP 211/1A] Length = 614 Score = 44.8 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 59/150 (39%), Gaps = 33/150 (22%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP GSGK+ +A ++++ + F SN+ K+ + + Sbjct: 43 PPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 102 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + ++M A P S Sbjct: 103 SPAIIFIDEIDSIAPKREKTQGEVERRIVSQLLTLMDGLKARSHVIVMGATNRPNSIDAA 162 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIV 183 L R + + I +PD+ +V+ Sbjct: 163 LR----RFGRFDREIDIGVPDEIGRLEVLR 188 Score = 37.8 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 27/57 (47%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E +D Sbjct: 316 PSKGVLFYGPPGCGKTPLAKAIANECQANFISVKGPELLTMWFGESEANVREILDKA 372 >gi|332159492|ref|YP_004424771.1| hypothetical protein PNA2_1852 [Pyrococcus sp. NA2] gi|331034955|gb|AEC52767.1| hypothetical protein PNA2_1852 [Pyrococcus sp. NA2] Length = 368 Score = 44.8 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 63/156 (40%), Gaps = 16/156 (10%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P R ++L GP G+GKS LA+ ++ +T FS A L S ++ Sbjct: 122 PPRGILLFGPPGTGKSLLASAVANNLNATFFSVKASDLLSKYFGESSKLV---------- 171 Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWG-VCLPDLCSRLKAATVVKISLPDDDFLEKV 181 + LF + Q + S++ ++ L D R+ + +I D EKV Sbjct: 172 -SALFSL---ARQMNPSVIFIDEIDSLTLKRSALDDAARRMIGTLLAEIDGFKD-KKEKV 226 Query: 182 IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 I+ + +D+ + + + R+ L E ++ Sbjct: 227 ILLAATNTPWDLDEAILSRLPIRIYTPLPDVEAAIE 262 >gi|308049686|ref|YP_003913252.1| Recombination protein MgsA [Ferrimonas balearica DSM 9799] gi|307631876|gb|ADN76178.1| Recombination protein MgsA [Ferrimonas balearica DSM 9799] Length = 442 Score = 44.8 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 35/194 (18%), Positives = 75/194 (38%), Gaps = 32/194 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 ++L GP G+GK+ LA + + + + R S + + I K +DI T Sbjct: 52 MLLWGPPGTGKTTLAELVARYANAHVERISAVTSGVKEIRAAIDKA---KDIAAAHGRQT 108 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + + + + A T S+ V L SR + V I Sbjct: 109 LLFVDEVHRFNKSQQDAFLPHIEDGTVIFIGATTENPSFEVNNA-LLSRTR---VYVIKK 164 Query: 173 PDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA-L 224 ++ + ++ D + + + +A + ++ A + ++ ++ +A + Sbjct: 165 LEESAILSLLQHALTDPDKGLGKLNLSLPEPVARQLASLVD---GDARRALNLLELMADM 221 Query: 225 SRGMGITRSLAAEV 238 + ++ +L EV Sbjct: 222 AEDGQLSEALLKEV 235 >gi|296313690|ref|ZP_06863631.1| replication-associated recombination protein A [Neisseria polysaccharea ATCC 43768] gi|296839751|gb|EFH23689.1| replication-associated recombination protein A [Neisseria polysaccharea ATCC 43768] Length = 436 Score = 44.8 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 20/134 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G GK+ LA I + + A S + D R+ + +I L T L Sbjct: 50 MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIREAIDKAEIALQQGRATIL 107 Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 F H N Q D+ L L+T A T S+ V P L SR A V + Sbjct: 108 FVDEVHRFNKAQQ-DAFLPHVESGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQSL 162 Query: 174 DDDFLEKVIVKMFA 187 D L+K+I K+ A Sbjct: 163 SSDDLKKLIAKVLA 176 >gi|153840138|ref|ZP_01992805.1| ATPase, AAA family [Vibrio parahaemolyticus AQ3810] gi|149746235|gb|EDM57329.1| ATPase, AAA family [Vibrio parahaemolyticus AQ3810] Length = 423 Score = 44.8 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 43/199 (21%), Positives = 68/199 (34%), Gaps = 38/199 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G+GK+ LA + ++ + + A + I E+ + T L Sbjct: 54 MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAREN--KMAGRRTIL 111 Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172 F H N Q D ++ T L SR A V K++ Sbjct: 112 FVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKLTS 165 Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIV------QRMERSLVFAEKLVDKM 219 D + + + + D R + + + RM SL + E L D Sbjct: 166 LDKEEISLALNQAINDKERGLGDTPANFADNVLDRLAELVNGDARM--SLNYLELLYDMA 223 Query: 220 DNLALSRGMGITRSLAAEV 238 ++ A IT L AEV Sbjct: 224 EDNA-QGEKEITLKLLAEV 241 >gi|89891667|ref|ZP_01203170.1| ATPase related to the helicase subunit of the holliday junction resolvase [Flavobacteria bacterium BBFL7] gi|89516002|gb|EAS18666.1| ATPase related to the helicase subunit of the holliday junction resolvase [Flavobacteria bacterium BBFL7] Length = 431 Score = 44.8 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 57/149 (38%), Gaps = 29/149 (19%) Query: 65 RVVILVGPSGSGKSCLANIWSDKS---------------RSTRFSNIAKSLDSILIDTRK 109 +IL GP G+GK+ LANI + +S + AKS + Sbjct: 41 PSLILWGPPGTGKTTLANIIAQESKRPFYTLSAINSGVKDVREVIDKAKSAGGLFTAKNP 100 Query: 110 PVLLEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168 + +++I + L + + L+ A T S+ V +P L SR V Sbjct: 101 ILFIDEIHRFSKSQQDSLL----AAVEKGWVTLIGATTENPSFEV-IPALLSR---CQVY 152 Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKL 197 + D F + + ++ R + ID+ L Sbjct: 153 VL----DAFAKADLEQLLH-RALKIDEVL 176 >gi|332993165|gb|AEF03220.1| recombination factor protein RarA [Alteromonas sp. SN2] Length = 444 Score = 44.8 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 55/158 (34%), Gaps = 31/158 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G+GK+ LA + + + ++ A + I E+ +N L Sbjct: 52 MILWGPPGTGKTTLAELIATYTNASVIRISAVTSGVKDIRAAMDAAKEN---SRYNQRTL 108 Query: 127 F-----HIINSIHQYD----------SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 H N Q + + T L SR++ V + Sbjct: 109 LFVDEVHRFNKSQQDAFLPFVESGTVTFIGATTENPSFELNNA---LLSRVR---VYVLK 162 Query: 172 LPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIV 202 + + L +++ + D RQ+ I++ + ++ Sbjct: 163 ALEQEALAELMQRALTDEEKGLGSRQLSIEEDASNALL 200 >gi|331089854|ref|ZP_08338747.1| hypothetical protein HMPREF1025_02330 [Lachnospiraceae bacterium 3_1_46FAA] gi|330403551|gb|EGG83109.1| hypothetical protein HMPREF1025_02330 [Lachnospiraceae bacterium 3_1_46FAA] Length = 262 Score = 44.8 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 20/127 (15%) Query: 46 HSAIEQAVRLIDSWPSWPSRVV-IL-VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI 103 SAI A + +W + L GP G+GKS LA ++ + + ++I Sbjct: 90 SSAIRIAEEYVANWQKMKQNHMGYLFWGPVGTGKSYLAACIANALLEQEVTVKMTNFNTI 149 Query: 104 LID---------------TRKPVLLEDIDLLDFNDTQL---FHIINSIHQYDSSLLMTAR 145 L D + ++++D+ + ++ L F +I+ ++ L++T Sbjct: 150 LNDLFAAEDKTEYIRSLNGYELLIIDDLGVERNSEYALENIFSVIDWRYRSGKPLIITTN 209 Query: 146 TFPVSWG 152 V Sbjct: 210 IPLVQLK 216 >gi|317500666|ref|ZP_07958885.1| hypothetical protein HMPREF1026_00828 [Lachnospiraceae bacterium 8_1_57FAA] gi|316897984|gb|EFV20036.1| hypothetical protein HMPREF1026_00828 [Lachnospiraceae bacterium 8_1_57FAA] Length = 263 Score = 44.8 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 20/127 (15%) Query: 46 HSAIEQAVRLIDSWPSWPSRVV-IL-VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI 103 SAI A + +W + L GP G+GKS LA ++ + + ++I Sbjct: 91 SSAIRIAEEYVANWQKMKQNHMGYLFWGPVGTGKSYLAACIANALLEQEVTVKMTNFNTI 150 Query: 104 LID---------------TRKPVLLEDIDLLDFNDTQL---FHIINSIHQYDSSLLMTAR 145 L D + ++++D+ + ++ L F +I+ ++ L++T Sbjct: 151 LNDLFAAEDKTEYIRSLNGYELLIIDDLGVERNSEYALENIFSVIDWRYRSGKPLIITTN 210 Query: 146 TFPVSWG 152 V Sbjct: 211 IPLVQLK 217 >gi|160936225|ref|ZP_02083598.1| hypothetical protein CLOBOL_01121 [Clostridium bolteae ATCC BAA-613] gi|158441035|gb|EDP18759.1| hypothetical protein CLOBOL_01121 [Clostridium bolteae ATCC BAA-613] Length = 438 Score = 44.8 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 18/130 (13%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I GP G GK+ LA I + ++ + +F N + I V E+ + T Sbjct: 51 PSMIFWGPPGVGKTTLAGIIAKRTNA-QFINFSAVTSGIKEIKEVMVQAENSRRMGIK-T 108 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + S +L+ A T S+ + L SR V + Sbjct: 109 LLFVDEIHRFNKAQQDAFLPYVEKGSIILIGATTENPSFEINSA-LLSR---CRVFVLQA 164 Query: 173 PDDDFLEKVI 182 ++ L ++I Sbjct: 165 LTENDLARLI 174 >gi|115725047|ref|XP_782191.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] Length = 357 Score = 44.8 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 28/201 (13%), Positives = 70/201 (34%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V+L GP G+GK+ LA + +++ST L + I ++ Sbjct: 137 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 196 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151 ++++D + + + ++N + + ++ A Sbjct: 197 LPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSSEEIKVIAATNRVDIL 256 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ P+++ +++ R++ + + + R Sbjct: 257 DPAL--LRSGRLD--RKIEFPAPNEEARARIMQ--IHSRKMNVGADVNFEELARCTDDFN 310 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ ++ G T Sbjct: 311 GAQCKAVCVEAGMIALRRGAT 331 >gi|21227358|ref|NP_633280.1| CdcH protein [Methanosarcina mazei Go1] gi|20905716|gb|AAM30952.1| CdcH protein [Methanosarcina mazei Go1] Length = 751 Score = 44.8 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 61/166 (36%), Gaps = 39/166 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + V+L GP G+GK+ +A + ++ + + + + D Sbjct: 209 PPKGVLLHGPPGTGKTMIAKAVASETDANFITISGPEIVSKYYGESEQKLREIFEEAEKD 268 Query: 107 TRKPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + +++ A P S Sbjct: 269 APSIIFIDEIDSIAPKRGEVTGEMERRVVAQLLSLMDGLKSRGEVVVIAATNRPNSIDEA 328 Query: 155 LPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L + ++I +PD + ++++ + R + ++ ++ Sbjct: 329 LR------RGGRFDREIEIGIPDRNGRKQIL--LIHTRGMPLEDEV 366 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P R V+L GP G+GK+ LA +++S + S L S + + + E Sbjct: 481 PPRGVLLFGPPGTGKTLLAKAVANESEANFISIKGPELLSKYVGESERAIRE 532 >gi|84515662|ref|ZP_01003023.1| ATPase, AAA family [Loktanella vestfoldensis SKA53] gi|84510104|gb|EAQ06560.1| ATPase, AAA family [Loktanella vestfoldensis SKA53] Length = 436 Score = 44.8 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 33/204 (16%), Positives = 70/204 (34%), Gaps = 27/204 (13%) Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDID 117 S ++ GP G GK+ +A + +D++ + S I + + + Sbjct: 49 ASGSLSSLVFWGPPGVGKTTIARLLADETDLHFVQISAIFTGVPELRKVFEAA----KMR 104 Query: 118 LLDFNDTQLF----HIINSIHQYD-------SSLLM---TARTFPVSWGVCLPDLCSRLK 163 + T LF H N Q ++L+ T L SR + Sbjct: 105 RQNGKGTLLFVDEIHRFNKAQQDGFLPYMEDGTILLVGATTENPSFELNAA---LLSRAQ 161 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + +++L D + L + + R + +D ++ + L++++ A Sbjct: 162 VFILTRLTLADLELLAQRAEQEMG-RALPLDGPAREALLDMADGDGRALLNLIEQV--AA 218 Query: 224 LSRGMGITR-SLAAEVLKETQQCD 246 +TR L ++K + D Sbjct: 219 WKTETKLTRDDLTKRLMKRAVKYD 242 >gi|300854386|ref|YP_003779370.1| putative helicase subunit of Holliday junction resolvase [Clostridium ljungdahlii DSM 13528] gi|300434501|gb|ADK14268.1| predicted helicase subunit of Holliday junction resolvase [Clostridium ljungdahlii DSM 13528] Length = 438 Score = 44.8 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 60/181 (33%), Gaps = 26/181 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 I GP G GK+ LA I ++ +++ + A + + + +D T L Sbjct: 55 AIFYGPPGVGKTTLARIIANTTKANFYELSAVNSGTSDVKKIIKEA-DDNQKFYSKKTIL 113 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N + +L+ A T + + L SR + + + Sbjct: 114 FIDEIHRFNKAQQDSVLNAVEKGIIILIGATTENPYFEINNA-LLSR---SMIFEFKNLS 169 Query: 175 D----DFLEKVIV--KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228 + + L I K F I +D ++ Y S K ++ +D + Sbjct: 170 ENNVKEALNNAIKSPKGFGYLNIEVDPEVFDYFAVH---SNGDIRKALNALDIAVRTSSR 226 Query: 229 G 229 Sbjct: 227 K 227 >gi|288559692|ref|YP_003423178.1| cell division control protein Cdc48 [Methanobrevibacter ruminantium M1] gi|288542402|gb|ADC46286.1| cell division control protein Cdc48 [Methanobrevibacter ruminantium M1] Length = 735 Score = 44.8 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 24/168 (14%), Positives = 62/168 (36%), Gaps = 43/168 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + V++ GP G+GK+ LA +++S + N+ + + + Sbjct: 240 PPKGVLMHGPPGTGKTLLAKAVANESDAHFIVINGPEIMSKYVGGSEENLREFFEEAEEN 299 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + ++++D + QL +++ ++ +++ A P S Sbjct: 300 APSIIFIDELDAIAPKREETNGEVERRTVAQLLTLMDGLNSRGQVVVIGATNRPDSLDGA 359 Query: 155 LP-----DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L D ++I +PD D ++++ R + + + + Sbjct: 360 LRRPGRFD--------REIEIGVPDKDERKEIME--IHTRGMPLAEDV 397 >gi|257084820|ref|ZP_05579181.1| recombination factor protein RarA [Enterococcus faecalis Fly1] gi|256992850|gb|EEU80152.1| recombination factor protein RarA [Enterococcus faecalis Fly1] Length = 425 Score = 44.8 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 71/195 (36%), Gaps = 36/195 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117 +IL GP G+GK+ +A+ + + + R N A + + +LL++I Sbjct: 42 MILYGPPGTGKTSIASAIAGSTNYAFRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIH 101 Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 LD D L H+ N ++M T + P + SR + ++ + Sbjct: 102 RLDKTKQDFLLPHLEN------GRIIMIGATTENPYITINPAIRSR---TQIFEVKPLTE 152 Query: 176 DFLEKVIVKMFAD--RQI-FIDKKLAAYIVQRMERSLV-FAEKLVDKMDNLALSRGM--- 228 +++ I + D R + L +Q + R+ ++ ++ L+ Sbjct: 153 TDIQQAIHEALTDSTRGLGDYPVHLEEKALQHLTRATNGDLRSALNGLE---LAVKSTPK 209 Query: 229 ------GITRSLAAE 237 IT + E Sbjct: 210 NEQGEIKITLPIIEE 224 >gi|255292411|dbj|BAH89530.1| transposase IstB-like ATP-binding protein [uncultured bacterium] Length = 226 Score = 44.8 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 58/154 (37%), Gaps = 32/154 (20%) Query: 29 FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI----- 83 F F ++ A A+ DSW + + V++ GP G GKS LA Sbjct: 79 SFDFDAVP-------MISKAQVMAMAAGDSWLAKGANVLM-FGPPGGGKSHLAAAIGLAL 130 Query: 84 ----WS-------DKSRSTRFSNIAKSLDSIL--IDTRKPVLLEDIDLLDFNDTQ---LF 127 W D + + + L++ + +D ++L+D+ + + + LF Sbjct: 131 IENSWRVLFTRTTDLVQKLQVARRELQLEAAITKLDKFDLIILDDLAYVTKDQAETSVLF 190 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161 +I S S+++TA LP SR Sbjct: 191 ELI-SARYERRSIMITANQPFGEMEQGLP--RSR 221 >gi|284031592|ref|YP_003381523.1| AAA ATPase central domain-containing protein [Kribbella flavida DSM 17836] gi|283810885|gb|ADB32724.1| AAA ATPase central domain protein [Kribbella flavida DSM 17836] Length = 457 Score = 44.8 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 62/176 (35%), Gaps = 28/176 (15%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT--------RKPVLLEDI 116 R V+L GP G+GK+ + +A + D V+LED Sbjct: 247 RGVLLYGPPGTGKTHTVRYLLSRLPQFTVVLLAGRSIMYIGDACALARKLEPALVVLEDC 306 Query: 117 DLLD--------FNDTQLFHIIN----SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164 DL+ + LF ++N D + L+T + P L R Sbjct: 307 DLIAESRDITRGGENPLLFQVLNEMDGLAEDADVAFLLTTNRA----DILEPALAQRPGR 362 Query: 165 A-TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF-AEKLVDK 218 V++ LPD +++ + + + IV R E + A++LV + Sbjct: 363 VDLAVEVPLPDAPGRSRLL--ALYGPSLEVSAGVVDEIVSRTEGTTASFAKELVRR 416 >gi|189423098|ref|YP_001950275.1| IstB domain protein ATP-binding protein [Geobacter lovleyi SZ] gi|189423951|ref|YP_001951128.1| IstB domain protein ATP-binding protein [Geobacter lovleyi SZ] gi|189423973|ref|YP_001951150.1| IstB domain protein ATP-binding protein [Geobacter lovleyi SZ] gi|189424358|ref|YP_001951535.1| IstB domain protein ATP-binding protein [Geobacter lovleyi SZ] gi|189424498|ref|YP_001951675.1| IstB domain protein ATP-binding protein [Geobacter lovleyi SZ] gi|189425239|ref|YP_001952416.1| IstB domain protein ATP-binding protein [Geobacter lovleyi SZ] gi|189425315|ref|YP_001952492.1| IstB domain protein ATP-binding protein [Geobacter lovleyi SZ] gi|189425903|ref|YP_001953080.1| IstB domain protein ATP-binding protein [Geobacter lovleyi SZ] gi|189426534|ref|YP_001953711.1| IstB domain protein ATP-binding protein [Geobacter lovleyi SZ] gi|189419357|gb|ACD93755.1| IstB domain protein ATP-binding protein [Geobacter lovleyi SZ] gi|189420210|gb|ACD94608.1| IstB domain protein ATP-binding protein [Geobacter lovleyi SZ] gi|189420232|gb|ACD94630.1| IstB domain protein ATP-binding protein [Geobacter lovleyi SZ] gi|189420617|gb|ACD95015.1| IstB domain protein ATP-binding protein [Geobacter lovleyi SZ] gi|189420757|gb|ACD95155.1| IstB domain protein ATP-binding protein [Geobacter lovleyi SZ] gi|189421498|gb|ACD95896.1| IstB domain protein ATP-binding protein [Geobacter lovleyi SZ] gi|189421574|gb|ACD95972.1| IstB domain protein ATP-binding protein [Geobacter lovleyi SZ] gi|189422162|gb|ACD96560.1| IstB domain protein ATP-binding protein [Geobacter lovleyi SZ] gi|189422793|gb|ACD97191.1| IstB domain protein ATP-binding protein [Geobacter lovleyi SZ] Length = 245 Score = 44.8 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 56/143 (39%), Gaps = 23/143 (16%) Query: 32 FPRCLGISRDDLLVHSAIEQAVRLI-DSWPSWPSRVVILVGPSGSGKSCLANIWSDK--- 87 FP + + E VR++ + +ILVG +G+GK+ LA + + Sbjct: 66 FPVEKDLDHFEFTDTPINETQVRMLYEGGFLTEKSNIILVGGTGTGKTHLAIAIARQVIR 125 Query: 88 ----SRSTRFSNIAKSLDSILIDTRKPVLLE---DIDLLDFND-----------TQLFHI 129 R ++ L+ + R L E +DL+ ++ LFH+ Sbjct: 126 NGKRGRYFNLLDLVNQLEQEKLSGRGGKLAEALCRLDLVVLDELGYLPFSKAGGQLLFHL 185 Query: 130 INSIHQYDSSLLMTARTFPVSWG 152 I+ +++ +SL++T W Sbjct: 186 ISKLYER-TSLIITTNLTFGEWP 207 >gi|308182591|ref|YP_003926718.1| recombination factor protein RarA [Helicobacter pylori PeCan4] gi|308064776|gb|ADO06668.1| recombination factor protein RarA [Helicobacter pylori PeCan4] Length = 391 Score = 44.8 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 71/189 (37%), Gaps = 25/189 (13%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILI--------DTRKPVLLE 114 GP G GK+ LA I + F+ L+ + + + V ++ Sbjct: 38 PHAFFYGPPGVGKTSLAQIIAHALERPILLFNATDFKLEDLRLKLKNYQNTLLKPVVFID 97 Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 + L+ + I + D +L++ A T ++ + + SR + + +++ + Sbjct: 98 ETHRLNKTQQEFLLPI---MEKDHALILGASTQDPNYSLSHA-IRSR---SFIFELTPLN 150 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234 L+K+ VK + I+ Y++ S A L++ +D A I + Sbjct: 151 KSDLDKLCVKALTLLKKQIEPSAKTYLLNN---SAGDARALLNLLDLSA-----KIENPI 202 Query: 235 AAEVLKETQ 243 E L+ + Sbjct: 203 TLETLQSLR 211 >gi|300121635|emb|CBK22153.2| unnamed protein product [Blastocystis hominis] Length = 441 Score = 44.8 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 60/178 (33%), Gaps = 43/178 (24%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + ++L GP G+GKS LA + ++ ST S + L S ++ Sbjct: 173 PWKGILLYGPPGTGKSYLAKAVASQADSTFMSVSSADLVSKWQGETARLVKNLFQLARKN 232 Query: 113 ------LEDIDLL----------DFNDTQL--FHIINSIHQYD------SSLLMTARTFP 148 +++ID L L F + L++ A P Sbjct: 233 KPTVIFIDEIDSLGGSRDSGNSSGGQKQALTEF----LVQMDGVGKDQTGILVLGATNVP 288 Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206 W + L R + + I LPD++ + + F + + Y+ + E Sbjct: 289 --WEIDSA-LRRRFQ--KRIYIPLPDEEARKAMFKIHFGKEMHELTDEDFDYLAKHTE 341 >gi|148655299|ref|YP_001275504.1| IstB ATP binding domain-containing protein [Roseiflexus sp. RS-1] gi|148567409|gb|ABQ89554.1| IstB domain protein ATP-binding protein [Roseiflexus sp. RS-1] Length = 263 Score = 44.8 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 47/136 (34%), Gaps = 31/136 (22%) Query: 52 AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------- 104 A W +IL G G GK+ LA +++ + + + +L Sbjct: 100 AQEYARHPRGW----LILFGNYGCGKTHLAAAIANQLLQNHYRVLFAVVPDLLDHLRSTF 155 Query: 105 --------------IDTRKPVLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTARTF 147 I ++L+D+ + + +LF IIN + + ++T+ Sbjct: 156 GPSSEIEYDQRFEDIREADVLILDDLGTENTTPWAREKLFQIINHRYNFALPTVITSNRK 215 Query: 148 PVSWGVCLPDLCSRLK 163 P P + SR+ Sbjct: 216 PEEID---PRIFSRMS 228 >gi|70606463|ref|YP_255333.1| proteasome-activating nucleotidase [Sulfolobus acidocaldarius DSM 639] gi|29423762|gb|AAO73475.1| putative 26S proteasome regulatory subunit 4 [Sulfolobus acidocaldarius] gi|68567111|gb|AAY80040.1| protease regulatory protein [Sulfolobus acidocaldarius DSM 639] Length = 396 Score = 44.8 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 27/57 (47%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P + V+L GP G+GK+ LA + +S +T +A + ++ E +L Sbjct: 169 PPKGVLLYGPPGTGKTMLAKAVAAESNATFIHVVASEFAQKFVGEGARIVREVFELA 225 >gi|56421102|ref|YP_148420.1| recombination factor protein RarA [Geobacillus kaustophilus HTA426] gi|56380944|dbj|BAD76852.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] Length = 431 Score = 44.8 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 28/176 (15%), Positives = 65/176 (36%), Gaps = 22/176 (12%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLED 115 ++L G G+GK+ LA + + + I +++++ + +++ Sbjct: 43 PSLLLYGEPGTGKTSLAYAIARTAGREWVAINATAAGKKEIEEAVEAARWSGNVVLFIDE 102 Query: 116 IDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 I L+ + H+ + L+ A T V P + SR +K P Sbjct: 103 IHRLNKAQQDVLLPHL-----ESGLVTLIGATTENPFHEVN-PAIRSRCGQIQQLKPLKP 156 Query: 174 DDDFLEKVIVKMFAD--RQIFIDKKLAA-YIVQRMERSLVFAEKLVDKMDNLALSR 226 DD L ++ + AD R + + ++ R+ + ++ + A++ Sbjct: 157 DD--LMIILKRALADPERGVGEPPVVIDESLLWRIAEAAGGDARVALSLLEAAVAA 210 >gi|117924970|ref|YP_865587.1| recombination factor protein RarA [Magnetococcus sp. MC-1] gi|117608726|gb|ABK44181.1| Recombination protein MgsA [Magnetococcus sp. MC-1] Length = 447 Score = 44.8 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 40/204 (19%), Positives = 73/204 (35%), Gaps = 35/204 (17%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD---F 121 +IL GP G GK+ +A + +T+ + +SL ++L ++ L+ D Sbjct: 49 PSMILWGPPGCGKTTIARMI-----ATQVTLRFESLSAVLAGVKEVRLVVDRAREARVLG 103 Query: 122 NDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATV 167 T LF H N + +L+ T L SR V Sbjct: 104 QGTILFVDEIHRFNKAQQDAFLPYVESGDIILIGATTENPSFELNGA---LLSR---CRV 157 Query: 168 VKISLPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 V++ + L ++ + D R + ++ + ++ Q +A L++ Sbjct: 158 VELKPLHEAALVTLLQRALVDQERGLERYKLAVEPEALQHMAQLAAGDGRYALNLLETFV 217 Query: 221 NLALSRGMGITRSLAAEVLKETQQ 244 LA G+ L E LK + Q Sbjct: 218 ELAAKSGVARGSQLTLERLKNSLQ 241 >gi|312143966|ref|YP_003995412.1| AAA ATPase central domain protein [Halanaerobium sp. 'sapolanicus'] gi|311904617|gb|ADQ15058.1| AAA ATPase central domain protein [Halanaerobium sp. 'sapolanicus'] Length = 443 Score = 44.8 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 46/263 (17%), Positives = 101/263 (38%), Gaps = 59/263 (22%) Query: 14 DKQKNDQP---KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILV 70 D++K DQP + + L + D +V + R I + R +I Sbjct: 8 DQEKKDQPLAYRMRPRNL------EEFFGQKD-IVGE-NKLLSRAIKADR---LRSLIFY 56 Query: 71 GPSGSGKSCLANIWSDKSRSTRFSNIAKS-----LDSILIDTRKPVLLEDIDLLDF-NDT 124 GP G+GK+ LA + ++++++ A + + ++ + L + + F ++ Sbjct: 57 GPPGTGKTSLAQVIANQTKAEFIKLNAVTSGVKDIREVIKKAKSNRSLYNTKTILFIDEI 116 Query: 125 QLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSR--------LKAATVV 168 H N + + +++ A T + V P L SR L+A+ + Sbjct: 117 ---HRFNKSQQDALLPSVENGTLIMIGATTENPYFEVNSP-LLSRSRIFRLEKLEASQIY 172 Query: 169 KISLPDDDFLEKVIVKMFADRQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 KI + +I K +R + I +K +I + + A ++ ++ Sbjct: 173 KI------LKKALINK---ERGLGKLEVNISEKDLRFIAELAD---GDARVALNTLELAV 220 Query: 224 LS--RGMGITRSLAAEVLKETQQ 244 L+ +L E+++++ Q Sbjct: 221 LTTPHDKNGQINLDKEIIEDSMQ 243 >gi|224125162|ref|XP_002319515.1| predicted protein [Populus trichocarpa] gi|222857891|gb|EEE95438.1| predicted protein [Populus trichocarpa] Length = 423 Score = 44.8 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 26/201 (12%), Positives = 66/201 (32%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + ++L GP G+GK+ +A + ++ +T L + I ++ Sbjct: 203 PPKGILLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEK 262 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151 +++ID + + ++N + D ++ A Sbjct: 263 SPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADIL 322 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L + S RL ++ P ++ +++ R++ + + + R Sbjct: 323 DPAL--MRSGRLD--RKIEFPHPSEEARARILQ--IHSRKMNVHPDVNFEELARSTDDFN 376 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ L+ T Sbjct: 377 GAQLKAVCVEAGMLALRRDAT 397 >gi|187735789|ref|YP_001877901.1| ABC transporter [Akkermansia muciniphila ATCC BAA-835] gi|187425841|gb|ACD05120.1| ABC transporter related [Akkermansia muciniphila ATCC BAA-835] Length = 265 Score = 44.8 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 68/175 (38%), Gaps = 23/175 (13%) Query: 66 VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL-LDFNDT 124 + LVGPSG GK+ L N+ + + + S D +I P D + F D Sbjct: 35 FICLVGPSGCGKTTLLNMIA---GLIKSDTGSISYDGEIISGPGP------DRTVVFQDF 85 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS-RLKAATVVKISLPDDDFLEKVIV 183 LF +N +H + L T + L +L S L T +I + + Sbjct: 86 ALFPWLNVLHNVEFGLRFTGIPRRKRCQIALKNLKSVGLDNFTQARIH----ELSGGMKQ 141 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV-DKM--DNLALSRGMGITRSLA 235 ++ R + + ++ ++ M+ + + +++ D A+ G GIT Sbjct: 142 RVAIARALALRPRV---LL--MDEPFAALDAMTREQLYADIQAICAGHGITVVFV 191 >gi|167758834|ref|ZP_02430961.1| hypothetical protein CLOSCI_01177 [Clostridium scindens ATCC 35704] gi|167663574|gb|EDS07704.1| hypothetical protein CLOSCI_01177 [Clostridium scindens ATCC 35704] Length = 438 Score = 44.8 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 34/200 (17%), Positives = 77/200 (38%), Gaps = 33/200 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +I GP G+GK+ LA + ++ + + A ++ E + + T L Sbjct: 55 IIFYGPPGTGKTTLAKVIANTTSAVFTQINATVAGKKDMEEVVGRAKETLGMYQKK-TIL 113 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N + + +L+ A T + V L SR +++ ++ D Sbjct: 114 FVDEIHRFNKSQQDYLLPFVEDGTIILIGATTENPYFEVNGA-LISR---SSIFELHPLD 169 Query: 175 DDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 + ++ VI + D + + I++ ++ + S A ++ ++ L+ Sbjct: 170 KEDIKTVIRRAVYDVEKGMGSYDAVIEEDALEFLA---DISGGDARNALNAVELGILTTE 226 Query: 228 MG------ITRSLAAEVLKE 241 IT +A+E +++ Sbjct: 227 RSDDGKIHITLPVASECIQK 246 >gi|75906293|ref|YP_320589.1| AAA ATPase [Anabaena variabilis ATCC 29413] gi|75700018|gb|ABA19694.1| AAA ATPase, central region [Anabaena variabilis ATCC 29413] Length = 613 Score = 44.8 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 50/142 (35%), Gaps = 46/142 (32%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS------------TRFSNIAKSLDSILIDTRKP---- 110 ++L GP G+GK+ LA + ++R+ +++ + R+ Sbjct: 396 ILLWGPPGTGKTLLAKAVASQARANFIGVNGPELLSRWVGASEQAVRELFAKARQAEPCV 455 Query: 111 VLLEDIDLLD-----------FNDTQLFHII------------------NSIHQYDSSLL 141 V +++ID L +D + ++ N D +LL Sbjct: 456 VFIDEIDTLAPARGSFSGDSGVSDRVVGQLLTELDGIEVGSTILVIGATNRPDALDPALL 515 Query: 142 MTARTFPVSWGVCLPDLCSRLK 163 R + V LPDL SRL Sbjct: 516 RAGRLD-LQMKVDLPDLASRLA 536 Score = 35.5 bits (81), Expect = 7.1, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 42/121 (34%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109 P+R V+LVGP G+GK+ A +++ + + L I K Sbjct: 126 PTRGVLLVGPPGTGKTLTARGLAEELGVNYIALVGPEVISKYYGEAEQRLRGIFEKAAKN 185 Query: 110 ---PVLLEDIDLLDFNDTQ------------LFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID L + + L +++ +++ A P Sbjct: 186 APCIIFIDEIDSLAPDRSAVEGEVEKRLVAQLLSLMDGFSHSQGVIVLAATNRPDHLDPA 245 Query: 155 L 155 L Sbjct: 246 L 246 >gi|289670475|ref|ZP_06491550.1| recombination factor protein RarA [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 457 Score = 44.8 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 39/200 (19%), Positives = 67/200 (33%), Gaps = 31/200 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125 +IL GP G GK+ LA + + + + F I+ L + + VL E Sbjct: 62 MILWGPPGCGKTTLALLLAHYADAE-FKAISAVLSG--LPEVRQVLAEAAQRFAGGRRTV 118 Query: 126 LF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKIS 171 LF H N Q ++L T L SR + + +S Sbjct: 119 LFVDEVHRFNKAQQYAFLPHIERGTILFVGATTENPSFELNSA---LLSRCRVHVLEGVS 175 Query: 172 LPD--DDFLEKVIVKMFADRQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 D + + A+R + + + I + + A L++ LA+ Sbjct: 176 PQDIVEALQRAL---HDAERGLGQQTIQVSEAALLEIASAADGDVRRALTLLEIAAELAM 232 Query: 225 SRGMGITRSLAAEVLKETQQ 244 G IT +VL + + Sbjct: 233 GEGGEITPRTLLQVLADRTR 252 >gi|123469082|ref|XP_001317755.1| spermatogenesis associated factor [Trichomonas vaginalis G3] gi|121900497|gb|EAY05532.1| spermatogenesis associated factor, putative [Trichomonas vaginalis G3] Length = 796 Score = 44.8 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 59/164 (35%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G GKS +A ++++ + + N+ + Sbjct: 232 PPRGILLYGPPGCGKSLIARAIANETGAAFYLINGPEIMSKMSGESEGNLRSIFEKAQET 291 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + N QL +++ + + ++M A P + Sbjct: 292 SPSIIFIDEIDSVAPNRDKAQGEASTRVVSQLLTLMDGVKSRSNVIVMAATNRPNAIDPA 351 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L R + + I +PD+ +V+ + + + Sbjct: 352 LR----RFGRFDREIDIGVPDEAGRLEVLGIHTKR--MKLSDDV 389 Score = 37.4 bits (86), Expect = 1.8, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 17/32 (53%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 PSR V+ GP G GK+ LA + + + S Sbjct: 505 PSRGVLFYGPPGCGKTLLAKAVASECSANFIS 536 >gi|310643530|ref|YP_003948288.1| aaa atpase central domain-containing protein [Paenibacillus polymyxa SC2] gi|309248480|gb|ADO58047.1| AAA ATPase central domain-containing protein [Paenibacillus polymyxa SC2] Length = 436 Score = 44.8 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 38/163 (23%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 ++L GP G GK+ LA+I S ++ R + + S+ + E ID N + Sbjct: 54 ILLYGPPGCGKTTLAHIISQHTQGDFVRLNAVEASVKDVR---------EVIDRAQTNKS 104 Query: 125 Q------LF----HIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 LF H NS Q +++ T + L SR +T+ Sbjct: 105 MYGKKTILFLDEVHRFNSSRQDALLPAVEKGTIVFIGATTENPFHYVNGALMSR---STL 161 Query: 168 VKISLPDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQ 203 ++ + + + +D Q+ +D+ +I Sbjct: 162 FQLEALTQEHSLAAMRRALSDADKGLGYMQLQVDEAALDHIAS 204 >gi|292655481|ref|YP_003535378.1| cell division control protein 48 [Haloferax volcanii DS2] gi|291370782|gb|ADE03009.1| cell division control protein 48 [Haloferax volcanii DS2] Length = 736 Score = 44.8 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 59/175 (33%), Gaps = 36/175 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P ++L GP G+GK+ LA + +S L D Sbjct: 510 PPTGLLLHGPPGTGKTMLARAIAAESGVNFIHVAGPELLDRYVGESEKSVREVFDRARQA 569 Query: 107 TRKPVLLEDIDLLDFND--------------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 V ++ID + + +QL +++ + +++ A + Sbjct: 570 APSIVFFDEIDAIATDRDSAGSDSGVSERVVSQLLTEMDNAADNPNLVVLAATNRRDALD 629 Query: 153 VCLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206 L L RL+ T V++ PD + ++ D+ + D L + M+ Sbjct: 630 PAL--LRPGRLE--THVEVPAPDIEARRAILDVHVRDKPLGTDVDLGD-VATHMD 679 >gi|223984816|ref|ZP_03634926.1| hypothetical protein HOLDEFILI_02224 [Holdemania filiformis DSM 12042] gi|223963225|gb|EEF67627.1| hypothetical protein HOLDEFILI_02224 [Holdemania filiformis DSM 12042] Length = 443 Score = 44.8 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 53/136 (38%), Gaps = 22/136 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I GP G GK+ LA I +++++S FS + + I K +++ T Sbjct: 55 MIFWGPPGVGKTTLARIIAERTQSHFVDFSAVTSGIKEIKEVMNKA----ELNRQMGEKT 110 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + S +L+ A T S+ + L SR V + Sbjct: 111 ILFVDEIHRFNKAQQDAFLPFVEKGSIILIGATTENPSFEINAA-LLSR---CKVFVLQA 166 Query: 173 PDDDFLEKVIVKMFAD 188 + L +++ + D Sbjct: 167 LATEDLTELLARALQD 182 >gi|90657569|gb|ABD96869.1| hypothetical protein [Cleome spinosa] Length = 635 Score = 44.8 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 74/212 (34%), Gaps = 40/212 (18%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110 R V+LVGP G+GK+ LA + ++ FS A + + Sbjct: 381 RGVLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFVEMFVGRGAARIRELFSVARKNAP 440 Query: 111 --VLLEDIDLLDF-------ND-----TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL- 155 + ++++D + ++ QL ++ +++ A P + L Sbjct: 441 SIIFIDELDAVGGKRGRSFNDERDQTLNQLLTEMDGFETDTKVVVIVATNRPEALDPALC 500 Query: 156 -PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 P SR V + PD + K++ D + + L +V + V A Sbjct: 501 RPGRFSR-----KVVVGEPDQEGRRKILAVHLRDVPLEEETDLLCDLVASLTPGFVGA-D 554 Query: 215 LVDKMDNLALSRGMG----ITRSLAAEVLKET 242 L + ++ AL +TR E ++ Sbjct: 555 LANIVNESALLAARRGGETVTREDIMEAIERA 586 >gi|291616896|ref|YP_003519638.1| YcaJ [Pantoea ananatis LMG 20103] gi|291151926|gb|ADD76510.1| YcaJ [Pantoea ananatis LMG 20103] Length = 455 Score = 44.8 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 44/197 (22%), Positives = 70/197 (35%), Gaps = 34/197 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G+GK+ LA I + + R S + + I + + T Sbjct: 61 MILWGPPGTGKTTLAEIIAHYGNADVERISAVTSGVKEIREAIERA----RLSKQAGRRT 116 Query: 125 QLF----HIIN--------SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + H+ + + A T S+ + L SR A V + Sbjct: 117 ILFVDEVHRFNKKSAGCLPAAHEDGTITFIGATTENPSFELNSA-LLSR---ARVYLLKS 172 Query: 173 PDDDFLEKVIVKMF--ADRQIFIDKKLAAYIVQRM---------ERSLVFAEKLVDKMDN 221 + +E+V+ + ADR L +RM R+L E + D + Sbjct: 173 LTTEDIEQVLDQAMQDADRGYGNSDILLPNNTRRMIAELVSGDARRALNTLEMMADMAET 232 Query: 222 LALSRGMGITRSLAAEV 238 A +T L EV Sbjct: 233 NA-QGKRELTPQLLTEV 248 >gi|289571653|ref|ZP_06451880.1| transposase [Mycobacterium tuberculosis T17] gi|289545407|gb|EFD49055.1| transposase [Mycobacterium tuberculosis T17] Length = 251 Score = 44.8 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 26/122 (21%) Query: 51 QAVRLIDSWPSWPSRVVILVGPSGSGKSC----LANIWSDKSRSTRFSNIAKSLDSILID 106 A+R +D+ VIL GP G GK+ L + + + RF+ ++ L + Sbjct: 93 AALRWLDA-----GESVILHGPVGVGKTHVAQALVHAVARRGGDVRFAKTSRMLSDLAGG 147 Query: 107 TRK--------------PVLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPV 149 ++L+D + + L+ +I+ L++T+ P Sbjct: 148 HADRSWGQRIREYTKPLVLILDDFAMREHTAMHADDLYELISDRAITGKPLILTSNRAPN 207 Query: 150 SW 151 +W Sbjct: 208 NW 209 >gi|224001338|ref|XP_002290341.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220973763|gb|EED92093.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 1157 Score = 44.8 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 24/54 (44%) Query: 56 IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109 +D P SRV++L GP G GKS LA+I + A S T + Sbjct: 485 VDVRPDESSRVLLLSGPPGVGKSTLAHIVCKHAGYRPIEVNASDERSASALTER 538 >gi|75812394|ref|YP_320013.1| fused recombination factor protein RarA/unknown domain-containing protein [Anabaena variabilis ATCC 29413] gi|75705150|gb|ABA24824.1| Recombination protein MgsA [Anabaena variabilis ATCC 29413] Length = 739 Score = 44.8 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 61/170 (35%), Gaps = 24/170 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +I GP G+GK+ LA + ++ +R+ + A I E T L Sbjct: 55 LIFYGPPGTGKTTLARVIANTTRAHFLAINAVLSGVKEIRAAIDTAQEQ-RKFHNQRTIL 113 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N + + +L+ A T + V L SR + + ++ + Sbjct: 114 FVDEVHRFNKSQQDALLPWVENGTVILIGATTENPYFEVNKA-LVSR---SRIFQLKALN 169 Query: 175 DDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVD 217 D+ L KV+ + D Q + ID + ++V ++ Sbjct: 170 DEDLYKVVEQTLTDEQRGYGCLKVKIDDEALKHLVNVANGDARSLLNALE 219 >gi|313221272|emb|CBY43727.1| unnamed protein product [Oikopleura dioica] Length = 418 Score = 44.8 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 26/167 (15%), Positives = 61/167 (36%), Gaps = 38/167 (22%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + ++ GP G+GK+ LA + ++++T A SL + I ++ Sbjct: 198 PPKGCLMYGPPGTGKTLLARACAAQTKATFLKLGATSLVQMFIGDGARMVRDAFALAKEK 257 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINS---IHQYDSSLLMTARTFPVSW 151 ++++D + + + ++N D+ ++ A Sbjct: 258 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNDNVKIIAATNRIDIL 317 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L L S RL ++ PD + +++ R++ +D + Sbjct: 318 DPAL--LRSGRLD--RKIEFPKPDQEARARIMQIHA--RKMTVDPDV 358 >gi|308184225|ref|YP_003928358.1| recombination factor protein RarA [Helicobacter pylori SJM180] gi|308060145|gb|ADO02041.1| recombination factor protein RarA [Helicobacter pylori SJM180] Length = 391 Score = 44.8 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 62/169 (36%), Gaps = 20/169 (11%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI----------DTRKPVLLE 114 GP G GK+ LA I + S A + + V ++ Sbjct: 38 PHAFFYGPPGVGKTSLAQIIARSLERPILSFNATDFKLEDLRLKLKNYQNTLLKPVVFID 97 Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 + L+ + I + + +L++ A T ++ + + SR + + +++ + Sbjct: 98 ETHRLNKTQQEFLLPI---MEKNHALILGASTQDPNYSLSHA-IRSR---SFIFELTPLN 150 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 L+K+ K A + I+ Y++ S A L++ +D A Sbjct: 151 KSDLDKLCTKALALLKKQIEPDAKTYLLNN---SAGDARALLNLLDLSA 196 >gi|289666013|ref|ZP_06487594.1| recombination factor protein RarA [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 436 Score = 44.8 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 39/200 (19%), Positives = 67/200 (33%), Gaps = 31/200 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125 +IL GP G GK+ LA + + + + F I+ L + + VL E Sbjct: 41 MILWGPPGCGKTTLALLLAHYADAE-FKAISAVLSG--LPEVRQVLAEAAQRFAGGRRTV 97 Query: 126 LF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKIS 171 LF H N Q ++L T L SR + + +S Sbjct: 98 LFVDEVHRFNKAQQDAFLPHIERGTILFVGATTENPSFELNSA---LLSRCRVHVLEGVS 154 Query: 172 LPD--DDFLEKVIVKMFADRQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 D + + A+R + + + I + + A L++ LA+ Sbjct: 155 PQDIVEALQRAL---HDAERGLGQQTIQVSEAALLEIASAADGDVRRALTLLEIAAELAM 211 Query: 225 SRGMGITRSLAAEVLKETQQ 244 G IT +VL + + Sbjct: 212 GEGGEITPRTLLQVLADRTR 231 >gi|260824734|ref|XP_002607322.1| hypothetical protein BRAFLDRAFT_119205 [Branchiostoma floridae] gi|229292669|gb|EEN63332.1| hypothetical protein BRAFLDRAFT_119205 [Branchiostoma floridae] Length = 407 Score = 44.8 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 29/201 (14%), Positives = 74/201 (36%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V+L GP G+GK+ LA + +++ST L + I ++ Sbjct: 187 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKMVRDAFALAKEK 246 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIHQYDSSL---LMTARTFPVSW 151 ++++D + + + ++N + + S++ ++ A Sbjct: 247 RPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQMDGFSSTMDIKVIAATNRVDIL 306 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ +P+++ +++ R++ + + + R Sbjct: 307 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNFEELARCTDDFN 360 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ ++ G T Sbjct: 361 GAQLKAVCVEAGMIALRRGAT 381 >gi|188591333|ref|YP_001795932.1| transposase, IS21 family [Cupriavidus taiwanensis] gi|188591591|ref|YP_001796190.1| transposase, IS21 family [Cupriavidus taiwanensis] gi|188591657|ref|YP_001796256.1| transopsase, IS21 family [Cupriavidus taiwanensis] gi|188591710|ref|YP_001796309.1| transposase, IS21 family [Cupriavidus taiwanensis] gi|188591727|ref|YP_001796326.1| transposase, IS21 family [Cupriavidus taiwanensis] gi|170938728|emb|CAP63715.1| transposase, IS21 family [Cupriavidus taiwanensis LMG 19424] gi|170938986|emb|CAP63997.1| transposase, IS21 family [Cupriavidus taiwanensis LMG 19424] gi|170939052|emb|CAP64067.1| transopsase, IS21 family [Cupriavidus taiwanensis LMG 19424] gi|170939105|emb|CAP64125.1| transposase, IS21 family [Cupriavidus taiwanensis LMG 19424] gi|170939122|emb|CAP64152.1| transposase, IS21 family [Cupriavidus taiwanensis LMG 19424] Length = 278 Score = 44.8 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 49/150 (32%), Gaps = 30/150 (20%) Query: 29 FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS 88 F F +V A A+ DSW V++ GP G GKS L + Sbjct: 79 AFDFSAVP-------MVSKAHVMALASGDSWLE-KGANVLIFGPPGGGKSHLGSAIGHAL 130 Query: 89 RSTRFSNIAKSLDSIL------------------IDTRKPVLLEDIDLLDFNDTQ---LF 127 + + I+ +D ++L+D+ + + LF Sbjct: 131 IDAGYRVLFTRTSEIVQKLQAARQSLQLPAALAKLDRFDLIILDDLSYARKDQAETSVLF 190 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 +I + SLL+TA W PD Sbjct: 191 ELI-AERYERRSLLITANQPFSGWDNVFPD 219 >gi|325289908|ref|YP_004266089.1| replicative DNA helicase loader DnaI [Syntrophobotulus glycolicus DSM 8271] gi|324965309|gb|ADY56088.1| replicative DNA helicase loader DnaI [Syntrophobotulus glycolicus DSM 8271] Length = 241 Score = 44.8 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 25/129 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS-------------------NIAKSLDSILIDT 107 ++L GP GSGK+ LA ++ + R + N A +D + I Sbjct: 96 LLLTGPVGSGKTFLAAAIANNLVANRINLLFLVVPDMLDELRASFSKNTASEIDLLDIAR 155 Query: 108 RKPVLL-EDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSR- 161 PVL+ +D+ ++ + +++ I+N ++T+ V L D CSR Sbjct: 156 TVPVLILDDLGAHNYTEWTKNRIYSILNYRMNEQLPTVITSNLDFGDIEVYLGDRTCSRL 215 Query: 162 LKAATVVKI 170 L+ V K+ Sbjct: 216 LQMCRVFKL 224 >gi|294671065|ref|ZP_06735920.1| hypothetical protein NEIELOOT_02773 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307173|gb|EFE48416.1| hypothetical protein NEIELOOT_02773 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 441 Score = 44.8 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 62/153 (40%), Gaps = 23/153 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G GK+ LA I + + A S + D R+ + +I L T L Sbjct: 50 MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIREAIDKAEIALQQGRATIL 107 Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 F H N Q D+ L L+T A T S+ V P L SR A V + Sbjct: 108 FVDEVHRFNKAQQ-DAFLPHVESGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQSL 162 Query: 174 DDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQ 203 D L+K+I K+ A R I+ +V Sbjct: 163 SSDDLQKLIAKVLALPEYRDFTIEADAQELLVN 195 >gi|108562846|ref|YP_627162.1| recombination factor protein RarA [Helicobacter pylori HPAG1] gi|107836619|gb|ABF84488.1| conserved hypothetical helicase-like protein [Helicobacter pylori HPAG1] Length = 391 Score = 44.8 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 64/179 (35%), Gaps = 21/179 (11%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI----------DTRKPVLLE 114 GP G GK+ LA I + S A + + V ++ Sbjct: 38 PNAFFYGPPGVGKTSLAQIIARSLERPILSFNATDFKLEDLRLKLKNYQNTLLKPVVFID 97 Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 + L+ + I + D +L++ A T ++ + + SR + +++ + Sbjct: 98 ETHRLNKTQQEFLLPI---MEKDHALILGASTQDPNYSLSHA-IRSR---SFTFELTPLN 150 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233 L+K+ K A + I+ Y++ S A L++ +D L+ IT Sbjct: 151 KSDLDKLCDKALALLKKQIEPDAKTYLLNN---SAGDARALLNLLD-LSAKIENPITLK 205 >gi|307105269|gb|EFN53519.1| hypothetical protein CHLNCDRAFT_136599 [Chlorella variabilis] Length = 609 Score = 44.8 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 53/156 (33%), Gaps = 36/156 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110 PS V+ L GP G+GK+ LA + ++ F+ A + + Sbjct: 361 PSGVL-LSGPPGTGKTLLARAVAGEAGVPFFAVSASEFVELFVGRGAARIRELFGEARKK 419 Query: 111 ----VLLEDIDL------LDFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 V ++++D + N+ QL ++ LL+ A P Sbjct: 420 APCVVFIDELDAVGGKRGIGLNEERDQTLNQLLTELDGFEARPGVLLLAATNRPDVLDAA 479 Query: 155 L--PDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 L P SR V + LPD++ ++ Sbjct: 480 LMRPGRLSR-----KVVVPLPDEEARAAILAVHLRR 510 >gi|302907531|ref|XP_003049666.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256730602|gb|EEU43953.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 825 Score = 44.8 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 64/194 (32%), Gaps = 40/194 (20%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTR----------------KP 110 V+LVGP G+GK+ LA + ++ F D I + Sbjct: 379 VLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEIFVGVGAKRVRELFTAAKSKSPAI 438 Query: 111 VLLEDIDLLDF-----NDT-------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158 V ++++D + + QL ++ Q +++ A P L Sbjct: 439 VFIDELDAIGGKRNPRDQAHAKQTLNQLLTELDGFDQDTKIIIIGATNLPTMLDKAL--- 495 Query: 159 CSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRME-RSLVFAEKL 215 +R + V + LPD ++ ++I + + + R RS E Sbjct: 496 -TRPGRFDRHVNVELPDVRGRIAILKHHA--KKIKVSPDVDLEAVAARCPGRSGAELE-- 550 Query: 216 VDKMDNLALSRGMG 229 + ++ AL Sbjct: 551 -NMLNVAALRASRA 563 >gi|302902973|ref|XP_003048760.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256729694|gb|EEU43047.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 820 Score = 44.8 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 64/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R V+L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 254 PPRGVLLYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 313 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + + ++M A P S Sbjct: 314 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSID-- 371 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + V I +PD +++ + + + + Sbjct: 372 -PALR-RFGRFDREVDIGIPDPTGRLEILQ--IHTKNMKLGDDV 411 >gi|168049525|ref|XP_001777213.1| predicted protein [Physcomitrella patens subsp. patens] gi|162671441|gb|EDQ57993.1| predicted protein [Physcomitrella patens subsp. patens] Length = 804 Score = 44.8 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 64/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP GSGK+ +A ++++ + F SN+ K+ + + Sbjct: 236 PPKGILLFGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 295 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + ++M A P S Sbjct: 296 APSIIFIDEIDSIAPKREKTQGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSID-- 353 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PD+ +VI + + + + + Sbjct: 354 -PALR-RFGRFDREIDIGVPDEVGRLEVI--RIHTKNMKLAEDV 393 Score = 39.7 bits (92), Expect = 0.40, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 509 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDVFDKA 565 >gi|150021414|ref|YP_001306768.1| Holliday junction DNA helicase RuvB [Thermosipho melanesiensis BI429] gi|172048671|sp|A6LN82|RUVB_THEM4 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|149793935|gb|ABR31383.1| Holliday junction DNA helicase RuvB [Thermosipho melanesiensis BI429] Length = 313 Score = 44.8 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 77/201 (38%), Gaps = 35/201 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+LVGP G GK+ LA+I S++ + L+ LE D+L ++ Sbjct: 31 VLLVGPPGLGKTTLAHIISNELGTNIHVTSGPILEKQGDVAAILTNLEHGDVLFIDEI-- 88 Query: 127 FHIINSIHQYDSSLLMTA----------RTFPVSWGVCLPDL----------CS------ 160 H +N + +L TA P + + + DL S Sbjct: 89 -HRMNRSVEE---ILYTAMEDFQIDILIGKGPSARSIRI-DLQPFTLVGATTRSGLLSAP 143 Query: 161 -RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 R + ++++ D L K+I + + I+K A + +R + A +L+ ++ Sbjct: 144 LRNRFGLIMELDFYSIDELSKIIERAAIVLNVEIEKDAAILLAKRSRGTPRIALRLLRRV 203 Query: 220 -DNLALSRGMGITRSLAAEVL 239 D + + I + E++ Sbjct: 204 RDMSTIRGKVKIDIYMVEEIM 224 >gi|126179252|ref|YP_001047217.1| proteasome-activating nucleotidase [Methanoculleus marisnigri JR1] gi|166199293|sp|A3CV35|PAN_METMJ RecName: Full=Proteasome-activating nucleotidase; Short=PAN; AltName: Full=Proteasomal ATPase; AltName: Full=Proteasome regulatory ATPase; AltName: Full=Proteasome regulatory particle gi|125862046|gb|ABN57235.1| Proteasome-activating nucleotidase [Methanoculleus marisnigri JR1] Length = 412 Score = 44.8 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P + V+L GP G+GK+ LA + ++ + + L I ++ E DL Sbjct: 186 PPKGVLLYGPPGTGKTLLARAVAHQTNAHFLRVVGSELVQKYIGEGARLVRELFDLA 242 >gi|315179811|gb|ADT86725.1| recombination factor protein RarA [Vibrio furnissii NCTC 11218] Length = 449 Score = 44.8 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 41/199 (20%), Positives = 65/199 (32%), Gaps = 38/199 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G+GK+ LA + ++ + + A + I E+ L T L Sbjct: 54 MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAREN--KLAGRRTIL 111 Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172 F H N Q D ++ T L SR A V K++ Sbjct: 112 FVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKLTS 165 Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIV------QRMERSLVFAEKLVDKM 219 + + + + AD R + + + RM + +L+ M Sbjct: 166 LSQTEIRQALDQAIADQERGLGKHAAHFHDNVLDRLSELVNGDARMSLNY---LELLYDM 222 Query: 220 DNLALSRGMGITRSLAAEV 238 IT SL AEV Sbjct: 223 AEENEQGEKQITLSLLAEV 241 >gi|313224888|emb|CBY20680.1| unnamed protein product [Oikopleura dioica] Length = 418 Score = 44.8 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 26/167 (15%), Positives = 61/167 (36%), Gaps = 38/167 (22%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + ++ GP G+GK+ LA + ++++T A SL + I ++ Sbjct: 198 PPKGCLMYGPPGTGKTLLARACAAQTKATFLKLGATSLVQMFIGDGARMVRDAFALAKEK 257 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINS---IHQYDSSLLMTARTFPVSW 151 ++++D + + + ++N D+ ++ A Sbjct: 258 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNDNVKIIAATNRIDIL 317 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L L S RL ++ PD + +++ R++ +D + Sbjct: 318 DPAL--LRSGRLD--RKIEFPKPDQEARARIMQIHA--RKMTVDPDV 358 >gi|312961667|ref|ZP_07776165.1| ATPase, AAA family [Pseudomonas fluorescens WH6] gi|311283926|gb|EFQ62509.1| ATPase, AAA family [Pseudomonas fluorescens WH6] Length = 441 Score = 44.8 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 36/210 (17%), Positives = 78/210 (37%), Gaps = 32/210 (15%) Query: 57 DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 ++ +I GP G GK+ LA + + S + F ++ L + + + + Sbjct: 40 EALEQGALHSMIFWGPPGVGKTTLARLLAKVSDAH-FETVSAVLAGVKEIRQAVEVAKQQ 98 Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162 T LF H N Q D +L+ T L SR Sbjct: 99 AGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154 Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLV 216 A V + D+ ++K++ + ++ RQ+ + ++ ++ + + + Sbjct: 155 --ARVYVLKSLDEAAMQKLLHRALSEDKGLGKRQLSVSEEGFKILLTAAD---GDGRRFL 209 Query: 217 DKMDNLA-LSR-GMGITRSLAAEVLKETQQ 244 + ++N + L+ G I L +L +T++ Sbjct: 210 NLLENASDLAEDGGEIGVDLLQSLLGDTRR 239 >gi|255262261|ref|ZP_05341603.1| recombination factor protein RarA [Thalassiobium sp. R2A62] gi|255104596|gb|EET47270.1| recombination factor protein RarA [Thalassiobium sp. R2A62] Length = 464 Score = 44.8 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 33/197 (16%), Positives = 72/197 (36%), Gaps = 27/197 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I GP G GK+ +A + +D++ + S I + + I + T Sbjct: 85 LIFWGPPGVGKTTIARLLADETDLHFIQISAIFTGVPELRKVFEAA----KIRRQNGKGT 140 Query: 125 QLF----HIINSIHQYD-------SSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N Q ++L+ T + SR + + ++ Sbjct: 141 LLFVDEIHRFNKAQQDGFLPHMEDGTILLVGATTENPSFELNAAV---LSRSQVLVLERL 197 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 SL D + + + + DR++ +D +++ + L++++ A + Sbjct: 198 SLTDLELMTQRAEQEL-DRKLPLDGHAREALLEMADGDGRALLNLIEQV--AAWKADKPL 254 Query: 231 -TRSLAAEVLKETQQCD 246 T +L ++K + D Sbjct: 255 DTNALTKRLMKRAAKYD 271 >gi|115457548|ref|NP_001052374.1| Os04g0284600 [Oryza sativa Japonica Group] gi|38346432|emb|CAD40219.2| OSJNBa0019J05.17 [Oryza sativa Japonica Group] gi|113563945|dbj|BAF14288.1| Os04g0284600 [Oryza sativa Japonica Group] gi|215701044|dbj|BAG92468.1| unnamed protein product [Oryza sativa Japonica Group] gi|222628539|gb|EEE60671.1| hypothetical protein OsJ_14130 [Oryza sativa Japonica Group] Length = 357 Score = 44.8 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 27/52 (51%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ +A+ ++ ++ +T L LI ++ + Sbjct: 147 PPKGVLLYGPPGTGKTLVAHAFASQTNATFLKLTGPQLAVKLIGEGARLVRD 198 >gi|70606569|ref|YP_255439.1| SAV protein-like [Sulfolobus acidocaldarius DSM 639] gi|30088847|gb|AAP13472.1| AAA family ATPase [Sulfolobus acidocaldarius] gi|68567217|gb|AAY80146.1| SAV protein-like [Sulfolobus acidocaldarius DSM 639] Length = 773 Score = 44.8 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 52/142 (36%), Gaps = 42/142 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTRKP 110 P + ++L GP G GK+ LA ++++ + + + L I D +K Sbjct: 229 PPKGILLYGPPGVGKTLLAKAVANETDAYFTSINGPEIMSKFYGESEQRLREIFEDAKKH 288 Query: 111 ----VLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFP------ 148 + +++ID + ++ QL +++ + + +++ A P Sbjct: 289 APAIIFIDEIDAIAPKRDEVIGEVERRVVAQLLTLMDGLENRGNVIVIAATNRPNAVDPA 348 Query: 149 --------VSWGVCLPDLCSRL 162 + LPD RL Sbjct: 349 LRRPGRFDREIEIPLPDKQGRL 370 Score = 37.8 bits (87), Expect = 1.4, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 19/32 (59%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + ++L GP G+GK+ LA + +S + + Sbjct: 502 PPKGILLFGPPGTGKTMLAKAVATESGANFIA 533 >gi|145537570|ref|XP_001454496.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124422262|emb|CAK87099.1| unnamed protein product [Paramecium tetraurelia] Length = 817 Score = 44.8 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 64/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R V+L GP GSGK+ +A ++++ + F N+ K+ + + Sbjct: 249 PPRGVLLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGEAEGNLRKAFEEAEKN 308 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + +++ A P S Sbjct: 309 SPAIIFIDEIDSIAPKREKVSGEVERRVVSQLLTLMDGLKGRGQVIVIGATNRPNSID-- 366 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PD+ +++ + + + + + Sbjct: 367 -PALR-RFGRFDREIDIGVPDEVGRMEIL--RIHTKNMKLAEDV 406 >gi|88807186|ref|ZP_01122698.1| putative ATPase, AAA family protein [Synechococcus sp. WH 7805] gi|88788400|gb|EAR19555.1| putative ATPase, AAA family protein [Synechococcus sp. WH 7805] Length = 759 Score = 44.8 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 62/170 (36%), Gaps = 24/170 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA I ++ +R+ S A + + ++ T L Sbjct: 83 LILHGPPGVGKTTLARIIANHTRAHFSSLNAVLAGVKDLRAEVSEAGQRLERHGLR-TIL 141 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H NS + + L+ A T + V L SR + + ++ Sbjct: 142 FIDEVHRFNSAQQDALLPWVENGTLTLIGATTENPYFEVNKA-LVSR---SRLFRLQTLT 197 Query: 175 DDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 + L K++ D R I ++ + AA++V ++ Sbjct: 198 PEDLNKLLDSALKDPERGYGGRNIKLEPEAAAHLVDVASGDARSLLNALE 247 >gi|195018023|ref|XP_001984706.1| GH14878 [Drosophila grimshawi] gi|193898188|gb|EDV97054.1| GH14878 [Drosophila grimshawi] Length = 957 Score = 44.8 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 16/79 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSR------------STRFSNIAKSLDSILIDTRKP 110 PSR ++L GP GSGK+ LA + + + + + + + Sbjct: 295 PSRGLLLHGPPGSGKTYLARAIAGQLKMPLLEVPATELIAGISGESEERIRDVFEQAIDH 354 Query: 111 ----VLLEDIDLLDFNDTQ 125 + +++ID + N Sbjct: 355 SPCVLFIDEIDAIAGNRQW 373 Score = 39.4 bits (91), Expect = 0.51, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 PS V+ L GP G GK+ LA ++++ S L ++ + + + Sbjct: 709 PSGVL-LCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESERAV 757 >gi|321478961|gb|EFX89917.1| hypothetical protein DAPPUDRAFT_299812 [Daphnia pulex] Length = 430 Score = 44.8 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 28/202 (13%), Positives = 71/202 (35%), Gaps = 38/202 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V+L GP G+GK+ LA + +++ST L + I ++ Sbjct: 210 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 269 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIHQYDSSL---LMTARTFPVSW 151 ++++D + + + ++N + + S+ ++ A Sbjct: 270 APAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTTDIKVIAATNRVDIL 329 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ P+++ +++ R++ + + + R Sbjct: 330 DPAL--LRSGRLD--RKIEFPHPNEEARARIMQ--IHSRKMNVSPDVNFEELSRSTEDFN 383 Query: 211 FAEKLVDKMDNLALSRGMGITR 232 A+ ++ ++ T Sbjct: 384 GAQCKAVCVEAGMIALRREATM 405 >gi|242081425|ref|XP_002445481.1| hypothetical protein SORBIDRAFT_07g020190 [Sorghum bicolor] gi|241941831|gb|EES14976.1| hypothetical protein SORBIDRAFT_07g020190 [Sorghum bicolor] Length = 792 Score = 44.8 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 60/164 (36%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP G+GK+ LA + +S + +N+ + Sbjct: 243 PPKGILLYGPPGTGKTLLARAIASESGAHFLVVNGPEIMSMMAGQSEANLRNVFEDAEKS 302 Query: 107 TRKPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + N +QL +++ + +++ A P S Sbjct: 303 APSIIFMDEIDAIAPNRDKTHGEVERRVVSQLLTLMDGLRPRAQVVVIGATNRPNSLDPA 362 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L R + + I +PD+ +++ D + + + + Sbjct: 363 LR----RFGRFDRELDIGVPDEVGRLEILRIHSKD--MPLAEDV 400 >gi|229916120|ref|YP_002884766.1| ATPase AAA [Exiguobacterium sp. AT1b] gi|229467549|gb|ACQ69321.1| AAA ATPase central domain protein [Exiguobacterium sp. AT1b] Length = 752 Score = 44.8 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 23/179 (12%), Positives = 57/179 (31%), Gaps = 33/179 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSD--------------------KSRSTRFSNIAKSLDS 102 PS ++ G G+GK+ LA + ++ + + ++ Sbjct: 266 PSLHLVFTGNPGTGKTTLARLMAEIYFELGLLGRPDLVEADRSSLVGAYVGQTEEQVMNK 325 Query: 103 ILIDTRKPVLLEDIDLLDFNDT-----------QLFHIINSIHQYDSSLLMTARTFPVSW 151 + + +++ L D L + S +++ A Sbjct: 326 VKEAEGGVLFIDEAYALKRQDASGSDYGQAAIDTLVAAMTSGEYAGKFVVILAGYPEEMR 385 Query: 152 GVCL--PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 L P L SR + ++ D+ L + K+ + + ++ ++ R++R Sbjct: 386 HFLLANPGLRSRFPESNHYELPNYRDEELVAIGEKVAQENNYVLTEEAKRSLLARIDRE 444 >gi|327310634|ref|YP_004337531.1| AAA family ATPase [Thermoproteus uzoniensis 768-20] gi|326947113|gb|AEA12219.1| AAA family ATPase, possible cell division control protein cdc48 [Thermoproteus uzoniensis 768-20] Length = 755 Score = 44.8 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 21/163 (12%), Positives = 59/163 (36%), Gaps = 31/163 (19%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P + ++L GP G+GK+ LA ++++ + + + D + Sbjct: 213 PPKGILLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEAKLREIFDEAKKN 272 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + + +++ A P + Sbjct: 273 APAIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLQERGQIVVIGATNRPDA---V 329 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L + ++I +PD +++ + + + + Sbjct: 330 DPALRRPGRFDREIQIPMPDKRARREILQVHTRNMPLCTSEDV 372 Score = 36.7 bits (84), Expect = 2.8, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 17/32 (53%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P R ++L GP G GK+ A + +S + + Sbjct: 501 PPRGILLYGPPGVGKTMFAKAVATESGANFIA 532 >gi|298713780|emb|CBJ27152.1| conserved unknown protein [Ectocarpus siliculosus] Length = 453 Score = 44.8 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 25/176 (14%), Positives = 60/176 (34%), Gaps = 44/176 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + ++L GP G+GK+ LA + ++ + L + I ++ Sbjct: 226 PPKGILLHGPPGTGKTLLARACAKQTDAIFLKLAGPQLVQMFIGDGAKLVRDAFELAKEK 285 Query: 113 ------------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTAR 145 ++++D + + ++N + D ++ A Sbjct: 286 CKDQQKGGAIIFIDELDAIGTKRFGGEQSGDREVQRTMLELLNQLDGFSSNDKIKVIAAT 345 Query: 146 TFPVSWGVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 P L L S RL +++ P ++ +++ R++ +DK + Sbjct: 346 NRPDVLDPAL--LRSGRLD--RKIELPHPSEEARGRILQ--IHSRKMNVDKSDVNF 395 >gi|217968790|ref|YP_002354024.1| ATPase AAA [Thauera sp. MZ1T] gi|217506117|gb|ACK53128.1| AAA ATPase central domain protein [Thauera sp. MZ1T] Length = 781 Score = 44.8 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 37/200 (18%), Positives = 77/200 (38%), Gaps = 41/200 (20%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTR 108 R ++L GP G+GK+ +A + ++ S IA+S +S ++ Sbjct: 547 RALLLYGPPGTGKTQIARTLAKEAGVAFIARSTAELKGQYLGQAASRIAQSFESARANSP 606 Query: 109 KPVLLEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 + ++++D L TQL ++ + + + A T V Sbjct: 607 AILFIDELDALTAARGSEAGDALQAEALTQLLQEMDGVRACSGLVFVVAAT--NRLDVID 664 Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME-RSLVFAEK 214 + SR A ++I +PD+ +++ + R + + +A + R E S + Sbjct: 665 AAVRSRF--AKQIEIGIPDEAGRAELLRVLLTGRPVAEELDVAT-LASRTEGYSGRDLGE 721 Query: 215 LVDKMDNLALSRGMGITRSL 234 LV A + ++R+L Sbjct: 722 LV------ATAFQRAVSRTL 735 >gi|78219446|gb|ABB38795.1| Recombination protein MgsA [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 375 Score = 44.8 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 59/162 (36%), Gaps = 14/162 (8%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSIL--IDTRKPVLLEDIDLLD 120 ++ GP G GKS +A + + + R S L + + + ++L+++ Sbjct: 7 PSLLFFGPPGCGKSTIALLLARNTGQKYIRISAPEAGLQQLRKSLAGVRILVLDELHRFS 66 Query: 121 FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 F + + L+ + T S+ V L SR+ V+++ L Sbjct: 67 KAQQDFFLP---VLESGEVTLLASTTENPSFSVTRQ-LLSRM---HVLRLKPLAHSDLLT 119 Query: 181 VIVKMFADRQIFIDKKLAAYI--VQRME-RSLVFAEKLVDKM 219 + + + + + + V + R+L+ + V + Sbjct: 120 LARRGAEAQGAALKDDVCEMLATVAHGDARTLLNLVEYVAGL 161 >gi|161527613|ref|YP_001581439.1| ATPase AAA [Nitrosopumilus maritimus SCM1] gi|160338914|gb|ABX12001.1| AAA family ATPase, CDC48 subfamily [Nitrosopumilus maritimus SCM1] Length = 722 Score = 44.8 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 59/159 (37%), Gaps = 33/159 (20%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK----P 110 V+L GP G+GK+ LA +++S + S L I + R+ Sbjct: 214 VLLYGPPGTGKTLLAKAVANESNAHFISISGPEIMSKFYGESEARLREIFKEAREKAPSI 273 Query: 111 VLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158 + +++ID + Q+ +++ + ++++A P + P L Sbjct: 274 IFVDEIDSIAPKREEVTGEVERRVVSQMLSLMDGLEARGKVIVISATNRPNAID---PAL 330 Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 + ++I +PD + ++ R + + + Sbjct: 331 RRPGRFDREIEIKVPDKKGRKDIL--AIHSRNMPLSDDV 367 Score = 38.2 bits (88), Expect = 0.97, Method: Composition-based stats. Identities = 13/36 (36%), Positives = 20/36 (55%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 R ++L GPSG+GK+ LA + +S + S L Sbjct: 485 RGILLHGPSGTGKTLLAKAVATQSEANFVSVRGPEL 520 >gi|310600|gb|AAA72002.1| ATPase [Sulfolobus acidocaldarius] Length = 780 Score = 44.8 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 57/163 (34%), Gaps = 33/163 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109 P + ++L GP G+GK+ LA ++ + + + + I + + Sbjct: 245 PPKGILLYGPPGTGKTLLARALRNEIGAYFITVNGPEIMSKFYGESEQRIREIFKEAEEN 304 Query: 110 ---PVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ I +++ A P + Sbjct: 305 APSIIFIDEIDAIAPKREDVTGEVEKRVVAQLLTLMDGIKGRGRVIVIGATNRPDAID-- 362 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L + ++I PD + ++ R + I + Sbjct: 363 -PALRRPGRFDREIEIRPPDTKGRKDILQVH--TRNMPITDDV 402 Score = 37.8 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 19/32 (59%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + ++L GP G+GK+ LA + +S + + Sbjct: 520 PPKGILLFGPPGTGKTMLAKAVATESGANFIA 551 >gi|85110657|ref|XP_963567.1| hypothetical protein NCU08706 [Neurospora crassa OR74A] gi|9453819|emb|CAB99387.1| conserved hypothetical protein [Neurospora crassa] gi|28925252|gb|EAA34331.1| hypothetical protein NCU08706 [Neurospora crassa OR74A] Length = 622 Score = 44.8 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 74/212 (34%), Gaps = 38/212 (17%) Query: 17 KNDQPKNKEEQLFFSFPRCLGISRDDL---LVHSAIEQAVRLIDSWPSWPSRVVILVGPS 73 K +P N+ + G D LV LI++ +IL G S Sbjct: 169 KRTKPNNRSA--PLAERMRPGSLDDVFGQDLVGP-NGVLRALIETDR---VPSMILWGGS 222 Query: 74 GSGKSCLANIWSDKSRSTRFSNIA-------------KSLDSILIDTRKPVLL-EDIDLL 119 G+GK+ +A + ++ S A ++ + + + R+ ++ ++I Sbjct: 223 GTGKTTIARCIAQRTGSRFIELNATSSGVAECKKYFGEAANELHLTGRRTIIFCDEIHRF 282 Query: 120 DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD-DDFL 178 +F + + L+ A T S+ V P L SR + DD Sbjct: 283 TKAQQDIFL---KPVEAGTITLIGATTENPSFKVV-PALLSR---CRTFTLQPLSRDDLQ 335 Query: 179 EKVIVKM---FADRQIF----IDKKLAAYIVQ 203 ++ + D+ + ID +L +Y+ Sbjct: 336 RILLRALKQEITDQHLPLSPLIDDELLSYLCA 367 >gi|297529246|ref|YP_003670521.1| Holliday junction DNA helicase RuvB [Geobacillus sp. C56-T3] gi|297252498|gb|ADI25944.1| Holliday junction DNA helicase RuvB [Geobacillus sp. C56-T3] Length = 333 Score = 44.8 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 47/209 (22%), Positives = 80/209 (38%), Gaps = 43/209 (20%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G GK+ LA I +++ + +L+ LE D+L ++ Sbjct: 56 VLLYGPPGLGKTTLAVIIANEMGVELRATSGPALERPGDLAALLTSLEPGDVLFIDEI-- 113 Query: 127 FHIINSIHQY--------------------DSSL--------LMTARTFPVSWGVCLPD- 157 H + + +L L+ A T + L D Sbjct: 114 -HRLPRAVEEVLYPAMEDYCLDIAIGKGPDARTLRLDLPPFTLVGATTRAGALSAPLRDR 172 Query: 158 --LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215 + SRL+ V D L ++I + A QI I+++ A + +R + A +L Sbjct: 173 FGVISRLEYYHV--------DQLAQIIERAAAILQIGIEREAALELARRARGTPRIANRL 224 Query: 216 VDKMDNLALSRG-MGITRSLAAEVLKETQ 243 + ++ + A RG IT LA E L+ Q Sbjct: 225 LRRVRDFAQVRGEGRITLPLAVEALERLQ 253 >gi|297623701|ref|YP_003705135.1| AAA ATPase central domain-containing protein [Truepera radiovictrix DSM 17093] gi|297164881|gb|ADI14592.1| AAA ATPase central domain protein [Truepera radiovictrix DSM 17093] Length = 439 Score = 44.8 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 46/134 (34%), Gaps = 18/134 (13%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 R ++L GP G GK+ LA + ++ S + A + + T Sbjct: 45 RSLLLWGPPGVGKTTLARLLAESSGAHFVGLSAVTAGVKEVRAVAAEAA--ERRAQGGQT 102 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + + L+ A T S+ V L SRL+ + + Sbjct: 103 LLFLDEVHRFNKAQQDLLLPFVEDGTLTLIGATTENPSFEVTGA-LRSRLQ---LFVLEP 158 Query: 173 PDDDFLEKVIVKMF 186 + + ++ + Sbjct: 159 LTQEEVRTLLTRAL 172 >gi|296089692|emb|CBI39511.3| unnamed protein product [Vitis vinifera] Length = 405 Score = 44.8 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 66/201 (32%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V+L GP G+GK+ +A + ++ +T L + I ++ Sbjct: 185 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEK 244 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151 +++ID + + ++N + D ++ A Sbjct: 245 SPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADIL 304 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L + S RL ++ P ++ +++ R++ + + + R Sbjct: 305 DPAL--MRSGRLD--RKIEFPHPTEEARARILQ--IHSRKMTVHPDVNFEELARSTDDFN 358 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ L+ T Sbjct: 359 GAQLKAVCVEAGMLALRRDAT 379 >gi|269216870|ref|ZP_06160724.1| replication-associated recombination protein A [Slackia exigua ATCC 700122] gi|269129677|gb|EEZ60761.1| replication-associated recombination protein A [Slackia exigua ATCC 700122] Length = 448 Score = 44.8 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 63/178 (35%), Gaps = 31/178 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I GP G GK+ LA + +D++ + FS + + I ++ D T Sbjct: 59 MIFWGPPGVGKTTLARVIADQTEARFINFSAVTSGIKEIRTIMQEA----DAQRGLGRRT 114 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +F H N + + L+ A T S+ V L SR V + Sbjct: 115 IVFVDEIHRFNKAQQDAFLPFVEKGAITLIGATTENPSFEVNGA-LLSR---CKVFVLKA 170 Query: 173 PDD----DFLEKVI--VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 + + L++ + + F D + I+ L I S A + ++ L Sbjct: 171 LTENDVVELLKRALSDERGFGDADVRIEDDLLHAIALF---SNGDARSALSTLEMATL 225 >gi|242036895|ref|XP_002465842.1| hypothetical protein SORBIDRAFT_01g046840 [Sorghum bicolor] gi|241919696|gb|EER92840.1| hypothetical protein SORBIDRAFT_01g046840 [Sorghum bicolor] Length = 810 Score = 44.8 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 59/150 (39%), Gaps = 33/150 (22%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP GSGK+ +A ++++ + F SN+ K+ + + Sbjct: 242 PPKGILLFGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 301 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + ++M A P S Sbjct: 302 APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSID-- 359 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIV 183 P L R + + I +PD+ +V+ Sbjct: 360 -PALR-RFGRFDREIDIGVPDEVGRLEVLR 387 Score = 39.7 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 515 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 571 >gi|226312492|ref|YP_002772386.1| hypothetical protein BBR47_29050 [Brevibacillus brevis NBRC 100599] gi|226314974|ref|YP_002774870.1| hypothetical protein BBR47_53890 [Brevibacillus brevis NBRC 100599] gi|226095440|dbj|BAH43882.1| hypothetical protein [Brevibacillus brevis NBRC 100599] gi|226097924|dbj|BAH46366.1| hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 275 Score = 44.8 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 50/122 (40%), Gaps = 26/122 (21%) Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV-------- 111 W ++ + L G +G GKS L + + + R+ S + + ++ TRKP+ Sbjct: 114 EEWGAKGIYLFGENGLGKSHLLSAATKELRNHGISVVYTTAKLLIAHTRKPIGKWDYLNA 173 Query: 112 -------LLEDIDL---LDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161 +++++ D+ +LF ++N Q S +L + + +L SR Sbjct: 174 YRAADVLIIDELGAEIPADWEMGELFTVLNG-RQNRSPILYGS-------NFTVKELESR 225 Query: 162 LK 163 Sbjct: 226 FN 227 >gi|15082383|gb|AAH12105.1| NVL protein [Homo sapiens] gi|325464593|gb|ADZ16067.1| nuclear VCP-like [synthetic construct] Length = 659 Score = 44.8 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 59/168 (35%), Gaps = 42/168 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P R V+L GP G GK+ LA+ + + A + + + + Sbjct: 100 PPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFEQAVSN 159 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151 + +++ID + QL + N++ L++ A P S Sbjct: 160 APCIIFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSL 219 Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKK 196 L +A + + +PD+ E+++ + R++ + + Sbjct: 220 DPALR------RAGRFDREICLGIPDEASRERILQTLC--RKLRLPQA 259 >gi|78065552|ref|YP_368321.1| recombination factor protein RarA [Burkholderia sp. 383] gi|77966297|gb|ABB07677.1| Recombination protein MgsA [Burkholderia sp. 383] Length = 436 Score = 44.8 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 60/169 (35%), Gaps = 22/169 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA + + + A I + ++ + T L Sbjct: 50 MILWGPPGVGKTTLARLTALAFDCEFIALSAVLGGVKDIRESMEQAKDTLNRTGRH-TIL 108 Query: 127 F----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N + + A T S+ V L SR A V + D Sbjct: 109 FVDEIHRFNKGQQDALLPFVESGLVTFIGATTENPSFEVNSA-LLSR---AQVYVLKSLD 164 Query: 175 DDFLEKVIVKM--FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 DD + +++ + A + D+K +V + A + ++ ++ Sbjct: 165 DDEMRQLLKRAQEIALDGLSFDEKAIDTLVGYAD---GDARRFLNLLEQ 210 >gi|21674448|ref|NP_662513.1| Holliday junction DNA helicase B [Chlorobium tepidum TLS] gi|25453272|sp|Q8KC00|RUVB_CHLTE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|21647634|gb|AAM72855.1| Holliday junction DNA helicase RuvB [Chlorobium tepidum TLS] Length = 344 Score = 44.8 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 34/200 (17%), Positives = 78/200 (39%), Gaps = 25/200 (12%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT--------RKPVLLEDIDL 118 V+L GP G GK+ LA+I + + + +D + +++I Sbjct: 56 VLLSGPPGLGKTTLAHIIAAEMGGSIKITSGPLIDKAGNLAGLLTSMKKGDILFIDEIHR 115 Query: 119 LDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD------------LCSRLKA-- 164 L + ++ +++ Y +L+ + + + L L S L+A Sbjct: 116 LAPAVEE--YLYSAMEDYRIDILLDSGPASRAVQLKLEPFTLVGATTRAGLLTSPLRARF 173 Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNLA 223 ++ + + L+ +I++ I ID+ A I +R + A +L+ + D Sbjct: 174 GINSRLDYYNPELLQSIIIRAAGILNIGIDEDAAMEIARRSRGTPRIANRLLRRARDFAQ 233 Query: 224 LSRGMGITRSLAAEVLKETQ 243 ++ I+ ++A L+ + Sbjct: 234 VAGDASISLAVARRTLESLE 253 >gi|297526098|ref|YP_003668122.1| AAA family ATPase, CDC48 subfamily [Staphylothermus hellenicus DSM 12710] gi|297255014|gb|ADI31223.1| AAA family ATPase, CDC48 subfamily [Staphylothermus hellenicus DSM 12710] Length = 738 Score = 44.8 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 30/218 (13%), Positives = 76/218 (34%), Gaps = 45/218 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTR-- 108 P + ++L GP G+GK+ LA ++++ + + + L I + Sbjct: 223 PPKGILLYGPPGTGKTLLAKAVANEAEAYFIAINGPEIISKFYGESEQRLREIFEQAKKN 282 Query: 109 --KPVLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + ++ QL +++ + +++ A P + Sbjct: 283 APAIIFIDEIDAIAPKRDEVMGEVERRVVAQLLALMDGLESRGDVIVIAATNRPNALD-- 340 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 P L + +++ LPD +++ R + + + + + A Sbjct: 341 -PALRRPGRFDREIEVPLPDKQGRLEILQ--IHTRGMPLANDVDLNKLAEITHGYTGA-D 396 Query: 215 LVDKMDNLALSRGMGI---------TRSLAAEVLKETQ 243 + + AL T + EVL++ + Sbjct: 397 IAALVKEAALHALRRYMPEIDLESETIPV--EVLEKME 432 Score = 44.0 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 35/216 (16%), Positives = 76/216 (35%), Gaps = 42/216 (19%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106 P R ++L GP G+GK+ LA + +S + + I + + Sbjct: 496 PPRGILLYGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARLY 555 Query: 107 TRKPVLLEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 + ++ID + +QL ++ I++ ++ +++ A P Sbjct: 556 APAVIFFDEIDAIAPARGYAFDSRVTERIVSQLLTEMDGINRLNNVVVIAATNRPDILDP 615 Query: 154 CLPDLCSRLKAAT---VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER--S 208 L L+ ++ + PD ++ + R + + K + Y + R+ S Sbjct: 616 AL------LRPGRFDKLIYVPPPD--LNGRIEILKIHTRNMPLAKDVDLYEIARLTEGYS 667 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 E LV + AL + I + L+ + Sbjct: 668 GADLEALVREAAMRALKENIEINKIYMRHFLEAINE 703 >gi|260888003|ref|ZP_05899266.1| replication-associated recombination protein A [Selenomonas sputigena ATCC 35185] gi|260862254|gb|EEX76754.1| replication-associated recombination protein A [Selenomonas sputigena ATCC 35185] Length = 450 Score = 44.8 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 70/196 (35%), Gaps = 28/196 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125 +I GP G GK+ LA I + ++++ A + I + V+ E + + Sbjct: 62 MIFWGPPGVGKTTLARIIARETKARFIDFSAVTSG---IKEIRTVMQEAEKNTAYGERTI 118 Query: 126 LF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 LF H N + S +L+ A T S+ + L SR V + Sbjct: 119 LFVDEIHRFNKAQQDAFLPFVEKGSIILIGATTENPSFEINSA-LLSR---CRVFVLKAL 174 Query: 174 DDDFLEKVIVKM------FADRQIFIDKKLAAYIVQRMERSLVFAEKLVD--KMDNLALS 225 + + ++ + F ++++ I L + A ++ ++ Sbjct: 175 QKEDILGLLRRALAAPEGFGNQKVEIADDLLEALAVFANGDARTALSTLEIVVLNGEVEK 234 Query: 226 RGMGITRSLAAEVLKE 241 + +TR + L++ Sbjct: 235 DAIKVTRETVEQCLEK 250 >gi|242083736|ref|XP_002442293.1| hypothetical protein SORBIDRAFT_08g017570 [Sorghum bicolor] gi|241942986|gb|EES16131.1| hypothetical protein SORBIDRAFT_08g017570 [Sorghum bicolor] Length = 589 Score = 44.8 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 37/209 (17%), Positives = 70/209 (33%), Gaps = 47/209 (22%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRKP 110 P + ++L GP G+GK+ LA + ++ + + K + +I K Sbjct: 325 PVKGILLFGPPGTGKTMLAKAVATEAGANIINLSISSITSKWLGEAEKYVKAIFSLASKL 384 Query: 111 ----VLLEDIDL-LDFNDTQLFH----------IIN----SIHQYDSSLLMTARTFP--- 148 + ++++D L + H +IN + + ++ A P Sbjct: 385 SPAIIFVDEVDSFLGKPERPGEHEAMSEFKNEFLINWDGLHTKEQEHVTVLGATNRPFDL 444 Query: 149 -----VSWGVCLPDLCSR---LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 V +PD SR LK ++ PD D + ++ L Sbjct: 445 GDAVIRRLMVSIPDASSREKILKVILSKEMLAPDVDLKLV-----ASMAGGYLWTDLKNL 499 Query: 201 IVQRMERSLVFAEKLVDKMDNLALSRGMG 229 V R L + K +LA++ G Sbjct: 500 CVTAAFRPLDEIMEKEKKEKSLAIAEGRP 528 >gi|242042265|ref|XP_002468527.1| hypothetical protein SORBIDRAFT_01g047410 [Sorghum bicolor] gi|241922381|gb|EER95525.1| hypothetical protein SORBIDRAFT_01g047410 [Sorghum bicolor] Length = 780 Score = 44.8 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 63/164 (38%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP GSGK+ +A ++++ + F SN+ K+ + Sbjct: 219 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFQEAEKN 278 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + ++M A P S Sbjct: 279 APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKTRAHVIVMGATNRPNSID-- 336 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PD+ +V+ + + + + + Sbjct: 337 -PALR-RFGRFDREIDIGVPDEVGRLEVLRVHTKN--MKLAEDV 376 Score = 40.5 bits (94), Expect = 0.24, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 492 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKA 548 >gi|238925821|ref|YP_002939339.1| ATP-dependent metalloprotease FtsH [Eubacterium rectale ATCC 33656] gi|238877498|gb|ACR77205.1| ATP-dependent metalloprotease FtsH [Eubacterium rectale ATCC 33656] Length = 604 Score = 44.8 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 39/193 (20%), Positives = 60/193 (31%), Gaps = 49/193 (25%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + +S FS + + Sbjct: 201 VLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEMFVGMGASKVRDLFRQAKEKAPCI 260 Query: 111 VLLEDIDLL--------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW----- 151 V +++ID + ND QL ++ + +++ A P S Sbjct: 261 VFIDEIDAIGKKRDGQMGGNDEREQTLNQLLTEMDGFEGNNGVIILAATNRPESLDPALT 320 Query: 152 ---------GVCLPDLCSRLKAATVV---KISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199 V LPDL R +A V KI DD L + + + Sbjct: 321 RPGRFDRRVPVELPDLAGR-EAILKVHAKKIKASDDVDLHTIARMASGASGAEL-ANIIN 378 Query: 200 YIVQRMERSLVFA 212 R RS Sbjct: 379 EAALRAVRSGRAV 391 >gi|209963765|ref|YP_002296680.1| recombination factor protein RarA [Rhodospirillum centenum SW] gi|209957231|gb|ACI97867.1| ATPase, AAA family [Rhodospirillum centenum SW] Length = 432 Score = 44.8 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 49/144 (34%), Gaps = 22/144 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ +A + + + F ++ + D RK T L Sbjct: 51 MILWGPPGCGKTTIARLLAQSTD-LHFEPLSAVFSGVA-DLRKVFEAAKARRAMGQGTLL 108 Query: 127 F----HIINSIHQYD---------SSLLMTARTFPV-SWGVCLPDLCSRLKAATVVKISL 172 F H N Q +L+ P L SR A V ++ Sbjct: 109 FIDEIHRFNRSQQDGFLPYVEDGTVTLVGATTENPSFELNAA---LLSR---AQVFVLNR 162 Query: 173 PDDDFLEKVIVKMFADRQIFIDKK 196 D+ LEK++ + A+ + Sbjct: 163 LDEAALEKLLQRAEAETGRPLPLD 186 >gi|164428754|ref|XP_957005.2| cell division cycle protein 48 [Neurospora crassa OR74A] gi|157072266|gb|EAA27769.2| cell division cycle protein 48 [Neurospora crassa OR74A] Length = 759 Score = 44.8 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 64/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R V+L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 192 PPRGVLLYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 251 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + + ++M A P S Sbjct: 252 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSID-- 309 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + V I +PD +++ + + + + Sbjct: 310 -PALR-RFGRFDREVDIGIPDPTGRLEILQ--IHTKNMKLADDV 349 >gi|116309138|emb|CAH66240.1| OSIGBa0145C02.5 [Oryza sativa Indica Group] Length = 357 Score = 44.8 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 27/52 (51%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ +A+ ++ ++ +T L LI ++ + Sbjct: 147 PPKGVLLYGPPGTGKTLVAHAFASQTNATFLKLTGPQLAVKLIGEGARLVRD 198 >gi|326798773|ref|YP_004316592.1| ATPase AAA [Sphingobacterium sp. 21] gi|326549537|gb|ADZ77922.1| AAA ATPase central domain protein [Sphingobacterium sp. 21] Length = 426 Score = 44.8 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 40/173 (23%), Positives = 71/173 (41%), Gaps = 28/173 (16%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF--- 121 +IL GP G GK+ LA I S + F+ ++++ + D R+ ++E +L Sbjct: 42 PSMILWGPPGVGKTTLAYIISKRLNRPFFN--LSAINAGVKDVRE--VIEQANLSKAMFQ 97 Query: 122 NDTQLF----HIIN--------SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 + LF H + S + L+ A T S+ V L SR V Sbjct: 98 DQPILFIDEIHRFSKSQQDSLLSAVERGLVTLIGATTENPSFEVISA-LLSR---CQVYT 153 Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLA---AYIVQRMERSLVFAEKLVDKM 219 + D+ L ++ K A+ + +KK+ + R+ S A KL++ + Sbjct: 154 LKPLDESDLVTLLQKALANDPVLKEKKIIIDEHEALLRI--SGGDARKLLNVL 204 >gi|315503209|ref|YP_004082096.1| aaa atpase central domain protein [Micromonospora sp. L5] gi|315409828|gb|ADU07945.1| AAA ATPase central domain protein [Micromonospora sp. L5] Length = 496 Score = 44.8 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 62/157 (39%), Gaps = 28/157 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL---DFND 123 VIL GP GSGK+ +A++ + + + A + + ++E Sbjct: 71 VILWGPPGSGKTTIAHLVARATDRRFVAMSALTAGVKDVRA----VIETARRQRRSGGPP 126 Query: 124 TQLF----HIIN--------SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 T LF H + + + + L+ A T + V P L SR ++ + Sbjct: 127 TVLFIDEVHRFSKTQQDSLLAAVEDRTVTLLAATTENPYFSVISP-LLSR---CVLLTLQ 182 Query: 172 LPDDDFLEKVIVKMFAD-RQ----IFIDKKLAAYIVQ 203 DDD + ++ + AD R + + ++ ++V+ Sbjct: 183 ALDDDDVRGLLRRAVADERGLGGSLVLAEEAEDHLVR 219 >gi|116789319|gb|ABK25201.1| unknown [Picea sitchensis] Length = 424 Score = 44.8 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 66/201 (32%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V+L GP G+GK+ +A + ++ +T L + I ++ Sbjct: 204 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKDK 263 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151 ++++D + + ++N + D ++ A Sbjct: 264 SPCIIFIDEVDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADIL 323 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L + S RL ++ P +D +++ R++ + + + R Sbjct: 324 DPAL--MRSGRLD--RKIEFPHPTEDARARILQ--IHSRKMTVHPDVNFEELARSTDDFN 377 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ L+ T Sbjct: 378 GAQLKAVCVEAGMLALRRDAT 398 >gi|312093422|ref|XP_003147677.1| VCP protein [Loa loa] gi|307757158|gb|EFO16392.1| VCP protein [Loa loa] Length = 622 Score = 44.8 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 49/121 (40%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 40 PPRGILLYGPPGTGKTLIARAVANETGAFFFLLNGPEIMSKLAGESESNLRKAFEECEKN 99 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + ++++D + QL +++ + Q ++M A P S Sbjct: 100 SPAILFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRSHVVVMAATNRPNSIDPA 159 Query: 155 L 155 L Sbjct: 160 L 160 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 4/67 (5%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 PSR V+ GP G GK+ LA + + ++ S L ++ + + + D F Sbjct: 313 PSRGVLFYGPPGCGKTLLAKAIAHECQANFISIKGPELLTMWFGESEANVRDVFDKASF- 371 Query: 123 DTQLFHI 129 LF I Sbjct: 372 ---LFDI 375 >gi|296229993|ref|XP_002760519.1| PREDICTED: nuclear valosin-containing protein-like isoform 2 [Callithrix jacchus] Length = 765 Score = 44.8 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 59/168 (35%), Gaps = 42/168 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P R V+L GP G GK+ LA+ + + A + + + + Sbjct: 206 PPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFEQAVSN 265 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151 + +++ID + QL + N++ L++ A P S Sbjct: 266 APCIIFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVASTARVLVIGATNRPDSL 325 Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKK 196 L +A + + +PD+ E+++ + R++ + + Sbjct: 326 DPALR------RAGRFDREICLGIPDEASRERILQTLC--RKLRLPQA 365 >gi|328955597|ref|YP_004372930.1| Recombination protein MgsA [Coriobacterium glomerans PW2] gi|328455921|gb|AEB07115.1| Recombination protein MgsA [Coriobacterium glomerans PW2] Length = 462 Score = 44.8 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 67/180 (37%), Gaps = 28/180 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS--------------LDSILIDTRKPVL 112 VIL GP+G GK+ LA I + +RS A S + +D R + Sbjct: 56 VILFGPAGVGKTTLARIIAMNTRSEFIEVSAVSGTVKDLRRAIEDAKRRLLSLDRRTILF 115 Query: 113 LEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++I + L H + +++ A T + V L SR + +V++ Sbjct: 116 IDEIHRFSKSQQDTLLH----AVEDRVVVMVGATTENPFFEVNSA-LLSR---SRIVELK 167 Query: 172 LPDDDFLEKVIVKMF-ADRQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 D+ + +I + + R + D++ I A ++ +AL+ Sbjct: 168 PLQDEEIGALIRRALGSPRGLAGRFAADEQTVDAIALMAAGDARAALTTLELASEIALTH 227 >gi|78776412|ref|YP_392727.1| recombination factor protein RarA [Sulfurimonas denitrificans DSM 1251] gi|78496952|gb|ABB43492.1| Recombination protein MgsA [Sulfurimonas denitrificans DSM 1251] Length = 393 Score = 44.8 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 22/164 (13%), Positives = 68/164 (41%), Gaps = 20/164 (12%) Query: 70 VGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILI--------DTRKPVLLEDIDLL 119 GPSG+GK+ +A I + + F+ + ++ + + + ++++ L Sbjct: 44 FGPSGTGKTSIARIIAKTMELPFYEFNATSIKIEQLRAIFEQYKNTLQKPLIFIDEVHRL 103 Query: 120 DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179 N ++ + + +S+L++ A T + + + SR + + ++ ++ L Sbjct: 104 AKNQQEVLLP---VMENNSALIIGASTENPFFSLTSA-IRSR---SMLFELHHISNEALS 156 Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 +++ + I + Y+++ S A ++ ++ + Sbjct: 157 RLLRRALDSSDITCSDEALEYLIKS---SGGDARSMLKLLEFAS 197 >gi|32473944|ref|NP_866938.1| cell division protein FtsH-like protein [Rhodopirellula baltica SH 1] gi|32444481|emb|CAD74479.1| cell division protein FtsH homolog [Rhodopirellula baltica SH 1] Length = 485 Score = 44.8 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 71/184 (38%), Gaps = 29/184 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSR--------STRFSNIAKSLDSILIDTRKPVLLEDIDL 118 V+ GP G+GK+ + + + + + + + + V++ED+DL Sbjct: 271 VLFYGPPGTGKTHTIHHLAGSLEGHTTILISAEQVGLLGEYMTLARLLQPSMVVMEDVDL 330 Query: 119 LDFN--------DTQLFH-IINSIH----QYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 + + L + ++N + + ++T P + L SR Sbjct: 331 IARERTSMESACEEVLLNKLLNEMDGLKEDAEIFFVLTTNR-PEALEAA---LASRPGRV 386 Query: 166 -TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER-SLVFAEKLVDKMDNLA 223 ++ LPD + K++ D F+D + + IV+R + S F ++ + + Sbjct: 387 DQAIEFPLPDAEGRRKLVSLYAPD--GFLDADMVSEIVRRTDGVSAAFIKEFIRRATQFT 444 Query: 224 LSRG 227 + RG Sbjct: 445 VERG 448 >gi|225450789|ref|XP_002283831.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|147844475|emb|CAN80003.1| hypothetical protein VITISV_001355 [Vitis vinifera] Length = 423 Score = 44.8 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 66/201 (32%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V+L GP G+GK+ +A + ++ +T L + I ++ Sbjct: 203 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEK 262 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151 +++ID + + ++N + D ++ A Sbjct: 263 SPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADIL 322 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L + S RL ++ P ++ +++ R++ + + + R Sbjct: 323 DPAL--MRSGRLD--RKIEFPHPTEEARARILQ--IHSRKMTVHPDVNFEELARSTDDFN 376 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ L+ T Sbjct: 377 GAQLKAVCVEAGMLALRRDAT 397 >gi|114762698|ref|ZP_01442132.1| putative transposase [Pelagibaca bermudensis HTCC2601] gi|114544608|gb|EAU47614.1| putative transposase [Roseovarius sp. HTCC2601] Length = 233 Score = 44.8 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 68/162 (41%), Gaps = 24/162 (14%) Query: 14 DKQKNDQPKNKEEQLFFS-FPRCLGISRDDLLVHSAIEQAVR-LIDSWPSWPSRVVILVG 71 + Q ++ + Q+ + P ++ D E VR L+ + R V+L+G Sbjct: 37 AEINEKQARSIKYQMTIAKLPLAKEVNEFDFEETPVNETLVRVLVSAEFLEQQRNVVLIG 96 Query: 72 PSGSGKSCLANIWSD-------KSRSTRFSNIAKSLDSILIDTRKP-----------VLL 113 +G+GKS LA + + R ++ LD+ D R+ V+L Sbjct: 97 GTGTGKSHLAVGIARACIRSGKRGRFFNVVDLVNKLDAEARDDRQGRIADLLCRMDFVIL 156 Query: 114 EDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWG 152 +++ L F T LFH+I+ +++ +S+++T W Sbjct: 157 DELGYLPFAQTGGQLLFHLISRLYER-TSIIVTTNLDFGEWP 197 >gi|78044663|ref|YP_360074.1| putative primosomal protein DnaI [Carboxydothermus hydrogenoformans Z-2901] gi|77996778|gb|ABB15677.1| putative primosomal protein DnaI [Carboxydothermus hydrogenoformans Z-2901] Length = 237 Score = 44.8 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 55/158 (34%), Gaps = 36/158 (22%) Query: 30 FSFPRCLGISRD-----DLLVHS--AIEQAVRLIDSWPSW-PSRVVILVGPSGSGKSCLA 81 F D + A++ A+ + + P + + GP GSGK+ LA Sbjct: 52 FDLSYYSKYHIDRERNISYYESAQRALKAAINFVKLLTTNQPVKGLYFSGPVGSGKTLLA 111 Query: 82 NIWSDKSRSTRFSNIAKSLDSIL------------------IDTRKPVLLEDIDLLDFND 123 I ++++ + + L + + ++L+D+ ++ + Sbjct: 112 AIIANEALKAGKDVLFVVVPEYLEKIKQSFGDENDGYLIEKALSTELLILDDLGAHNYTE 171 Query: 124 ---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158 L+ IIN Y +++T + L DL Sbjct: 172 WTKNTLYLIINHRLYYQLPVVITT-------NISLEDL 202 >gi|323448821|gb|EGB04715.1| hypothetical protein AURANDRAFT_70378 [Aureococcus anophagefferens] Length = 427 Score = 44.8 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P + V+L GP G+GK+ LA + ++ + L + I ++ + +L Sbjct: 200 PPKGVLLHGPPGTGKTLLARACAKQTDAIFLKLAGPQLVQMFIGDGAKLVRDAFELA 256 >gi|212550412|ref|YP_002308729.1| hypothetical protein CFPG_055 [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548650|dbj|BAG83318.1| conserved hypothetical protein [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 438 Score = 44.8 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 56/141 (39%), Gaps = 22/141 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSR-------------STRFSNIAKSLDSILIDTRKPVL- 112 IL GP G GK+ LA I S++ I K+ D + +P+L Sbjct: 55 FILWGPPGVGKTTLARIISNQMNIPFFMLSAVNSGLKDIGKVIDKAKDVRFFNGVRPILF 114 Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +++I + F + + + + +L+ A T S+ V P L SR V + Sbjct: 115 IDEIHRFSKSQQD-FLL--TAVEDRTIILIGATTENPSFEVIRP-LLSR---CQVYVLKN 167 Query: 173 PDDDFLEKVIVKMF-ADRQIF 192 ++ L ++ K D Q+ Sbjct: 168 LQNEDLLALMHKALKEDNQLR 188 >gi|33239543|ref|NP_874485.1| recombination factor protein RarA [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237068|gb|AAP99137.1| ATPase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 446 Score = 44.8 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 37/188 (19%), Positives = 68/188 (36%), Gaps = 25/188 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +I GP G GK+ LA I + +RS A + I E + T L Sbjct: 57 LIFHGPPGVGKTTLAKIIAANTRSYFSVLNAVLVGVKEIRKEVEDARERLGRYGLK-TIL 115 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H NS + + +L+ A T + V L SR + + +++ + Sbjct: 116 FLDEVHRFNSAQQDALLPWVENGTFILIGATTENPYFEVNKA-LVSR---SRIFRLTPIE 171 Query: 175 DDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVD-KMDNLALSR 226 L K++V+ +D +Q+ + A ++V ++ ++ A+ Sbjct: 172 PHHLHKLLVRALSDSEKGFGKKQVKLSSDAANHLVDVANGDARSLLNALELAVETTAIDA 231 Query: 227 GMGITRSL 234 I L Sbjct: 232 KGVINIDL 239 >gi|15610563|ref|NP_217944.1| transposase [Mycobacterium tuberculosis H37Rv] gi|148663291|ref|YP_001284814.1| ISMt2 transposase B [Mycobacterium tuberculosis H37Ra] gi|167968684|ref|ZP_02550961.1| transposase [Mycobacterium tuberculosis H37Ra] gi|215447755|ref|ZP_03434507.1| ISMt2 transposase B [Mycobacterium tuberculosis T85] gi|289752146|ref|ZP_06511524.1| transposase [Mycobacterium tuberculosis T92] gi|289755556|ref|ZP_06514934.1| transposase [Mycobacterium tuberculosis EAS054] gi|289759586|ref|ZP_06518964.1| transposase [Mycobacterium tuberculosis T85] gi|294995800|ref|ZP_06801491.1| ISMt2 transposase B [Mycobacterium tuberculosis 210] gi|306777767|ref|ZP_07416104.1| hypothetical protein TMAG_04005 [Mycobacterium tuberculosis SUMu001] gi|306973886|ref|ZP_07486547.1| hypothetical protein TMJG_03615 [Mycobacterium tuberculosis SUMu010] gi|307081598|ref|ZP_07490768.1| hypothetical protein TMKG_03773 [Mycobacterium tuberculosis SUMu011] gi|307086204|ref|ZP_07495317.1| hypothetical protein TMLG_03016 [Mycobacterium tuberculosis SUMu012] gi|2497395|sp|Q50701|Y3427_MYCTU RecName: Full=Putative ATP-binding protein Rv3427c in insertion sequence gi|1449360|emb|CAB01029.1| POSSIBLE TRANSPOSASE [Mycobacterium tuberculosis H37Rv] gi|148507443|gb|ABQ75252.1| ISMt2 transposase B [Mycobacterium tuberculosis H37Ra] gi|289692733|gb|EFD60162.1| transposase [Mycobacterium tuberculosis T92] gi|289696143|gb|EFD63572.1| transposase [Mycobacterium tuberculosis EAS054] gi|289715150|gb|EFD79162.1| transposase [Mycobacterium tuberculosis T85] gi|305662421|gb|ADM62325.1| IS1532 transposase [Mycobacterium tuberculosis] gi|308213901|gb|EFO73300.1| hypothetical protein TMAG_04005 [Mycobacterium tuberculosis SUMu001] gi|308356770|gb|EFP45621.1| hypothetical protein TMJG_03615 [Mycobacterium tuberculosis SUMu010] gi|308360720|gb|EFP49571.1| hypothetical protein TMKG_03773 [Mycobacterium tuberculosis SUMu011] gi|308364339|gb|EFP53190.1| hypothetical protein TMLG_03016 [Mycobacterium tuberculosis SUMu012] gi|326905268|gb|EGE52201.1| transposase [Mycobacterium tuberculosis W-148] Length = 251 Score = 44.8 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 26/122 (21%) Query: 51 QAVRLIDSWPSWPSRVVILVGPSGSGKSC----LANIWSDKSRSTRFSNIAKSLDSILID 106 A+R +D+ VIL GP G GK+ L + + + RF+ ++ L + Sbjct: 93 AALRWLDA-----GESVILHGPVGVGKTHVAQALVHAVARRGGDVRFAKTSRMLSDLAGG 147 Query: 107 TRK--------------PVLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPV 149 ++L+D + + L+ +I+ L++T+ P Sbjct: 148 HADRSWGQRIREYTKPLVLILDDFAMREHTAMHADDLYELISDRAITGKPLILTSNRAPN 207 Query: 150 SW 151 +W Sbjct: 208 NW 209 >gi|91779952|ref|YP_555160.1| putative transposase-associated ATP- binding protein [Burkholderia xenovorans LB400] gi|91782086|ref|YP_557292.1| putative transposase-associated ATP- binding protein [Burkholderia xenovorans LB400] gi|91782654|ref|YP_557860.1| putative transposase-associated ATP- binding protein, IstB [Burkholderia xenovorans LB400] gi|91783102|ref|YP_558308.1| putative transposase ATP-binding protein, IstB [Burkholderia xenovorans LB400] gi|91783267|ref|YP_558473.1| putative transposase-associated ATP- binding protein [Burkholderia xenovorans LB400] gi|91783375|ref|YP_558581.1| putative transposase-associated ATP- binding protein [Burkholderia xenovorans LB400] gi|91686040|gb|ABE29240.1| Putative transposase-associated ATP- binding protein [Burkholderia xenovorans LB400] gi|91686608|gb|ABE29808.1| Putative transposase-associated ATP- binding protein, IstB [Burkholderia xenovorans LB400] gi|91687056|gb|ABE30256.1| Putative transposase ATP-binding protein, IstB [Burkholderia xenovorans LB400] gi|91687221|gb|ABE30421.1| Putative transposase-associated ATP- binding protein [Burkholderia xenovorans LB400] gi|91687329|gb|ABE30529.1| Putative transposase-associated ATP- binding protein [Burkholderia xenovorans LB400] gi|91692612|gb|ABE35810.1| Putative transposase-associated ATP- binding protein [Burkholderia xenovorans LB400] Length = 283 Score = 44.8 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 31/126 (24%), Positives = 52/126 (41%), Gaps = 27/126 (21%) Query: 67 VILVGPSGSGKSCLANIW----------------SDKSRSTRFSNIAKSLDSIL--IDTR 108 +IL+GPSG GKS L++ +D + + + +L+S + +D Sbjct: 107 LILLGPSGGGKSHLSSAIGLSLLEKGWKVLFARTTDLVQRLQVARRELALESAINRLDRF 166 Query: 109 KPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 V+L+D + + + LF +I S SL +TA W PD +A Sbjct: 167 DLVILDDFAYVSKDQAETSVLFELI-SARYERRSLCITANQPFGEWDKVFPD-----RAM 220 Query: 166 TVVKIS 171 TV + Sbjct: 221 TVAAVD 226 >gi|309378598|emb|CBX22776.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 436 Score = 44.8 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 56/134 (41%), Gaps = 20/134 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G GK+ LA I + + A S + D R + +I L T L Sbjct: 50 MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIRGAIDKAEIALQQGRATIL 107 Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 F H N Q D+ L L+T A T S+ V P L SR A V + Sbjct: 108 FVDEVHRFNKAQQ-DAFLPYVENGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQSL 162 Query: 174 DDDFLEKVIVKMFA 187 D L+K+I K+ A Sbjct: 163 SSDGLKKLIAKVLA 176 >gi|148259183|ref|YP_001233310.1| recombination factor protein RarA [Acidiphilium cryptum JF-5] gi|326402336|ref|YP_004282417.1| replication-associated recombination protein A [Acidiphilium multivorum AIU301] gi|146400864|gb|ABQ29391.1| Recombination protein MgsA [Acidiphilium cryptum JF-5] gi|325049197|dbj|BAJ79535.1| replication-associated recombination protein A [Acidiphilium multivorum AIU301] Length = 444 Score = 44.8 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 62/185 (33%), Gaps = 35/185 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIA-----KSLDSILIDTRKPVLLEDIDLLDF 121 +IL GP G GK+ +A + +D++ A L + + + LL Sbjct: 66 LILWGPPGVGKTTIARLLADRAGLVFVQISAVFSGVADLKRVFEEAARRRRTGARTLLFV 125 Query: 122 NDTQLFHIINSIHQYDSSLLM----------TARTFPVSWGVCLPDLCSRLKAATVVKIS 171 ++ H N Q ++ T L SR V+ + Sbjct: 126 DEI---HRFNRAQQDGFLPVVEEGTITLVGATTENPSFELNGA---LLSR---CQVLVLR 176 Query: 172 LPDDDFLEKVIVKMFA--DRQIFIDKKLAAYIVQRMERSLVFAEKLVDK---------MD 220 DDD LE+++ + A R++ + A + + + ++ +D Sbjct: 177 RLDDDALEQLLRRAEAVTARKLALTDAARAALRAMADGDGRAILNMAEQLFAANPSAPLD 236 Query: 221 NLALS 225 AL+ Sbjct: 237 EAALA 241 >gi|259649523|dbj|BAI41685.1| recombination factor protein RarA [Lactobacillus rhamnosus GG] Length = 461 Score = 44.8 bits (105), Expect = 0.013, Method: Composition-based stats. Identities = 28/167 (16%), Positives = 58/167 (34%), Gaps = 23/167 (13%) Query: 67 VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKP-------VLLEDID 117 +IL GP G+GK+ +A+ + K + + + I + +LL++I Sbjct: 72 MILYGPPGTGKTSIASAIAGSTKYAFRILNAATDTKKDLQIVAEEAKMSGTVILLLDEIH 131 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 LD + + +L+ A T + P + SR + ++ Sbjct: 132 RLDKTKQDFLLP---LLESGRIVLIGATTENPYMNIQ-PAIRSR---TQIFQVKPLTPTD 184 Query: 178 LEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 + I + AD Q+ + + Y+ L A ++ Sbjct: 185 ISTAIDRALADDKRGLGKYQVDLTPEARDYLTHTTNGDLRAALNGLE 231 >gi|256959292|ref|ZP_05563463.1| recombination factor protein RarA [Enterococcus faecalis DS5] gi|256949788|gb|EEU66420.1| recombination factor protein RarA [Enterococcus faecalis DS5] gi|315034534|gb|EFT46466.1| recombination factor protein RarA [Enterococcus faecalis TX0027] Length = 425 Score = 44.8 bits (105), Expect = 0.013, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 70/195 (35%), Gaps = 36/195 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117 +IL GP G+GK+ +A+ + + + R N A + + +LL++I Sbjct: 42 MILYGPPGTGKTSIASAIAGSTNYAFRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIH 101 Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 LD D L H+ N ++M T + P + SR + ++ + Sbjct: 102 RLDKTKQDFLLPHLEN------GRIIMIGATTENPYITINPAIRSR---TQIFEVKPLTE 152 Query: 176 DFLEKVIVKMFAD--RQI-FIDKKLAAYIVQRMERSLV-FAEKLVDKMDNLALSRGM--- 228 +++ I + D R + L +Q R+ ++ ++ L+ Sbjct: 153 TDIQQAIQEALTDSTRGLGDYPVHLEEKALQHSTRATNGDLRSALNGLE---LAVKSTPK 209 Query: 229 ------GITRSLAAE 237 IT + E Sbjct: 210 NEQGEIKITLPIIEE 224 >gi|229549682|ref|ZP_04438407.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis ATCC 29200] gi|255972380|ref|ZP_05422966.1| recombination factor protein RarA [Enterococcus faecalis T1] gi|300861178|ref|ZP_07107265.1| recombination factor protein RarA [Enterococcus faecalis TUSoD Ef11] gi|312951281|ref|ZP_07770182.1| recombination factor protein RarA [Enterococcus faecalis TX0102] gi|229305162|gb|EEN71158.1| crossover junction endodeoxyribonuclease [Enterococcus faecalis ATCC 29200] gi|255963398|gb|EET95874.1| recombination factor protein RarA [Enterococcus faecalis T1] gi|300850217|gb|EFK77967.1| recombination factor protein RarA [Enterococcus faecalis TUSoD Ef11] gi|310630717|gb|EFQ14000.1| recombination factor protein RarA [Enterococcus faecalis TX0102] gi|315152587|gb|EFT96603.1| recombination factor protein RarA [Enterococcus faecalis TX0031] gi|315159893|gb|EFU03910.1| recombination factor protein RarA [Enterococcus faecalis TX0312] Length = 425 Score = 44.8 bits (105), Expect = 0.013, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 70/195 (35%), Gaps = 36/195 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117 +IL GP G+GK+ +A+ + + + R N A + + +LL++I Sbjct: 42 MILYGPPGTGKTSIASAIAGSTNYAFRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEIH 101 Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 LD D L H+ N ++M T + P + SR + ++ + Sbjct: 102 RLDKTKQDFLLPHLEN------GRIIMIGATTENPYITINPAIRSR---TQIFEVKPLTE 152 Query: 176 DFLEKVIVKMFAD--RQI-FIDKKLAAYIVQRMERSLV-FAEKLVDKMDNLALSRGM--- 228 +++ I + D R + L +Q R+ ++ ++ L+ Sbjct: 153 TDIQQAIQEALTDSTRGLGDYPVHLEEKALQHSTRATNGDLRSALNGLE---LAVKSTPK 209 Query: 229 ------GITRSLAAE 237 IT + E Sbjct: 210 NEQGEIKITLPIIEE 224 >gi|261344311|ref|ZP_05971955.1| replication-associated recombination protein A [Providencia rustigianii DSM 4541] gi|282567915|gb|EFB73450.1| replication-associated recombination protein A [Providencia rustigianii DSM 4541] Length = 447 Score = 44.8 bits (105), Expect = 0.013, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 69/198 (34%), Gaps = 36/198 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G+GK+ LA I +++ R S + + I K +L T Sbjct: 53 MILWGPPGTGKTTLAEIIGHYAQADIERLSAVTSGIKEIRESIEKA----RQNLSAGRRT 108 Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N Q D ++ T L SR A V + Sbjct: 109 ILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSA---LLSR---ARVYLL 162 Query: 171 SLPDDDFLEKVIVKMFAD--RQI-----FIDK---KLAAYIVQRMERSLVFAEKLVDKMD 220 D+ +E V+++ +D R + + K+ A +V R + +++ M Sbjct: 163 KSLDESEIEDVLLQALSDSTRGLGGQNIILPDSTRKMIAQLVNGDARRSLNLLEMMADMA 222 Query: 221 NLALSRGMGITRSLAAEV 238 +T L EV Sbjct: 223 EADSQGQRVLTSDLLKEV 240 >gi|24373860|ref|NP_717903.1| recombination factor protein RarA [Shewanella oneidensis MR-1] gi|24348271|gb|AAN55347.1|AE015672_3 ATPase, AAA family [Shewanella oneidensis MR-1] Length = 445 Score = 44.4 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 36/177 (20%), Positives = 63/177 (35%), Gaps = 34/177 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLD---F 121 ++L GP G+GK+ LA + + S + R S + + I +E + Sbjct: 54 MMLWGPPGTGKTTLAELIAHYSNAHVERISAVTSGVKDIRG------AIEQAQAIAQSRG 107 Query: 122 NDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 T LF H N + + + + A T S+ + L SR A V Sbjct: 108 QRTLLFVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEINNA-LLSR---ARVYL 163 Query: 170 ISLPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 I D + +I + AD R + + + + Q + A L++ M Sbjct: 164 IKRLSQDEIVHIITQALADTERGLGQRALNMPTDVLNKLAQLCDGDARKALNLLELM 220 >gi|199597549|ref|ZP_03210978.1| recombination factor protein RarA [Lactobacillus rhamnosus HN001] gi|258508206|ref|YP_003170957.1| AAA family ATPase [Lactobacillus rhamnosus GG] gi|199591572|gb|EDY99649.1| recombination factor protein RarA [Lactobacillus rhamnosus HN001] gi|257148133|emb|CAR87106.1| ATPase, AAA family [Lactobacillus rhamnosus GG] Length = 431 Score = 44.4 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 28/167 (16%), Positives = 58/167 (34%), Gaps = 23/167 (13%) Query: 67 VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKP-------VLLEDID 117 +IL GP G+GK+ +A+ + K + + + I + +LL++I Sbjct: 42 MILYGPPGTGKTSIASAIAGSTKYAFRILNAATDTKKDLQIVAEEAKMSGTVILLLDEIH 101 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 LD + + +L+ A T + P + SR + ++ Sbjct: 102 RLDKTKQDFLLP---LLESGRIVLIGATTENPYMNIQ-PAIRSR---TQIFQVKPLTPTD 154 Query: 178 LEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 + I + AD Q+ + + Y+ L A ++ Sbjct: 155 ISTAIDRALADDKRGLGKYQVDLTPEARDYLTHTTNGDLRAALNGLE 201 >gi|330838519|ref|YP_004413099.1| AAA ATPase central domain protein [Selenomonas sputigena ATCC 35185] gi|329746283|gb|AEB99639.1| AAA ATPase central domain protein [Selenomonas sputigena ATCC 35185] Length = 442 Score = 44.4 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 70/196 (35%), Gaps = 28/196 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125 +I GP G GK+ LA I + ++++ A + I + V+ E + + Sbjct: 54 MIFWGPPGVGKTTLARIIARETKARFIDFSAVTSG---IKEIRTVMQEAEKNTAYGERTI 110 Query: 126 LF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 LF H N + S +L+ A T S+ + L SR V + Sbjct: 111 LFVDEIHRFNKAQQDAFLPFVEKGSIILIGATTENPSFEINSA-LLSR---CRVFVLKAL 166 Query: 174 DDDFLEKVIVKM------FADRQIFIDKKLAAYIVQRMERSLVFAEKLVD--KMDNLALS 225 + + ++ + F ++++ I L + A ++ ++ Sbjct: 167 QKEDILGLLRRALAAPEGFGNQKVEIADDLLEALAVFANGDARTALSTLEIVVLNGEVEK 226 Query: 226 RGMGITRSLAAEVLKE 241 + +TR + L++ Sbjct: 227 DAIKVTRETVEQCLEK 242 >gi|225436170|ref|XP_002266075.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|296090151|emb|CBI39970.3| unnamed protein product [Vitis vinifera] Length = 907 Score = 44.4 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 35/100 (35%), Gaps = 21/100 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110 P V+L GP G GK+ +A + ++ + +L+ Sbjct: 427 PPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVN 486 Query: 111 ----VLLEDIDLLDFNDTQLF-----HIINSIHQYDSSLL 141 + +++ID L +F H+ N+ Q + L Sbjct: 487 KPSVIFIDEIDALATRRQGIFSESTDHLYNAATQERETTL 526 >gi|160914951|ref|ZP_02077165.1| hypothetical protein EUBDOL_00959 [Eubacterium dolichum DSM 3991] gi|158433491|gb|EDP11780.1| hypothetical protein EUBDOL_00959 [Eubacterium dolichum DSM 3991] Length = 429 Score = 44.4 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 28/167 (16%), Positives = 63/167 (37%), Gaps = 25/167 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSR-----STRFSNIAKSLDSILIDT----RKPVLLEDID 117 +I GP G+GK+ LA + ++ S K LD I + V+++++ Sbjct: 45 MIFYGPPGTGKTTLAMVLANTLNKPYRLFNAVSGNKKDLDRIFEEAKYFPGLVVIVDEVH 104 Query: 118 LLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 L+ + L HI D S++M T P + SR + ++ Sbjct: 105 RLNKDKQDLLLPHI------EDGSIIMIGATTSNPLHAINPAIRSR---CHLFEVKALTQ 155 Query: 176 DFLEKVIVKMFA-----DRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 + +++ + ++ I++ I + + +A +++ Sbjct: 156 EDIKQALRNAIQSPKGLQNEVSIEEDALDIIARHCNGDIRYALNILE 202 >gi|160902803|ref|YP_001568384.1| Holliday junction DNA helicase B [Petrotoga mobilis SJ95] gi|160360447|gb|ABX32061.1| Holliday junction DNA helicase RuvB [Petrotoga mobilis SJ95] Length = 351 Score = 44.4 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 61/177 (34%), Gaps = 30/177 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G GK+ LA + S++ + ++ LE+ D+L ++ Sbjct: 62 VVLAGPPGLGKTTLAYVISNELGANLQITSGPVIEKAGDLAAILTNLENGDVLFIDEI-- 119 Query: 127 FHIINSIHQYDSSLLM-------------TART------------FPVSWGVCLPDLCSR 161 H +N + M +AR+ G+ P L SR Sbjct: 120 -HRLNRTVEEILYSAMEDFQLDIVIGKGPSARSIRIDLQPFTLVGATTRLGLIAPPLRSR 178 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218 V P D L +I + I I + + + QR + A +L+ + Sbjct: 179 FGIILEVDFYSPKD--LNLIIKRSADILNIKIKEDASLILAQRSRGTPRIANRLLRR 233 >gi|39940094|ref|XP_359584.1| cell division control protein Cdc48 [Magnaporthe oryzae 70-15] gi|145010540|gb|EDJ95196.1| cell division control protein Cdc48 [Magnaporthe oryzae 70-15] Length = 820 Score = 44.4 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 64/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R V+L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 255 PPRGVLLYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 314 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + + ++M A P S Sbjct: 315 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSID-- 372 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + V I +PD +++ + + + + Sbjct: 373 -PALR-RFGRFDREVDIGIPDPTGRLEILQ--IHTKNMKLGDDV 412 >gi|326382142|ref|ZP_08203834.1| recombination factor protein RarA [Gordonia neofelifaecis NRRL B-59395] gi|326198872|gb|EGD56054.1| recombination factor protein RarA [Gordonia neofelifaecis NRRL B-59395] Length = 453 Score = 44.4 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 70/176 (39%), Gaps = 30/176 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVL--------L 113 V+L GP G+GK+ +A++ S + S K + +++ R+ + + Sbjct: 64 VLLYGPPGTGKTTMASLISQATGGRFEALSALSAGVKEVRAVIDVARRRLAQGQQTVLFI 123 Query: 114 EDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +++ L + LL+ A T S+ V P L SR + V+++ Sbjct: 124 DEVHRFSKTQQDALL----DAVENRIVLLVAATTENPSFSVVAP-LLSR---SLVLQLRS 175 Query: 173 PDDDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 ++ +E V+ + D R + + + A ++V A + + ++ A Sbjct: 176 LTEEDVEAVLRRAVIDPRGLNGAVSLSDEAARHLVAVAG---GDARRALTALEASA 228 >gi|296163587|ref|ZP_06846324.1| IstB domain protein ATP-binding protein [Burkholderia sp. Ch1-1] gi|295886167|gb|EFG66048.1| IstB domain protein ATP-binding protein [Burkholderia sp. Ch1-1] Length = 283 Score = 44.4 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 27/126 (21%) Query: 67 VILVGPSGSGKSCLANI---------W-------SDKSRSTRFSNIAKSLDSIL--IDTR 108 +IL+GPSG GKS L++ W +D + + + +L+S + +D Sbjct: 107 LILLGPSGGGKSHLSSAVGLSLLEKGWKVLFARTTDLVQRLQVARRELALESAINRLDRF 166 Query: 109 KPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 V+L+D + + + LF +I S SL +TA W PD +A Sbjct: 167 DLVILDDFAYVSKDQAETSVLFELI-SARYERRSLCITANQPFGEWDKVFPD-----RAM 220 Query: 166 TVVKIS 171 TV + Sbjct: 221 TVAAVD 226 >gi|219120710|ref|XP_002181088.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217407804|gb|EEC47740.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 930 Score = 44.4 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 63/176 (35%), Gaps = 41/176 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRS-------------------TRFSNIAKSLDSI 103 P R V+L GPSGSGK+ +A + ++ + T + ++ Sbjct: 364 PPRGVLLTGPSGSGKTAMARAVAAETGAYFFVINGPEVISKRAGESETNLRRAFEDAEAN 423 Query: 104 LIDTRKPVL-LEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVS 150 D ++ +++ID + QL +++ + ++M A P Sbjct: 424 ADDYNGAIIFIDEIDSIAPKREKAGGEVEKRVVSQLLTLMDGLKPTSKVVVMAATNRP-- 481 Query: 151 WGVCLPDLC--SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 GV P L R + +PD+ +++ R + + + ++ R Sbjct: 482 -GVIEPALRRPGRFDREL--DMGIPDEQGRLEILQ--IKMRDMRLSDDVDLELLAR 532 Score = 39.0 bits (90), Expect = 0.59, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 18/32 (56%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 PS+ V+ GP G GK+ LA +++ + S Sbjct: 641 PSKGVLFYGPPGCGKTLLAKAIANECGANFIS 672 >gi|161870104|ref|YP_001599274.1| recombination factor protein RarA [Neisseria meningitidis 053442] gi|161595657|gb|ABX73317.1| putative ATPase [Neisseria meningitidis 053442] Length = 436 Score = 44.4 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 40/134 (29%), Positives = 57/134 (42%), Gaps = 20/134 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G GK+ LA I + + A S + D R+ + +I L T L Sbjct: 50 MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIREAIDKAEIALQQGRATIL 107 Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 F H N Q D+ L L+T A T S+ V P L SR A V + Sbjct: 108 FVDEVHRFNKAQQ-DAFLPHVESGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQPL 162 Query: 174 DDDFLEKVIVKMFA 187 D L+K++ K+ A Sbjct: 163 SSDGLKKLVAKVLA 176 >gi|84489878|ref|YP_448110.1| CdcH [Methanosphaera stadtmanae DSM 3091] gi|84373197|gb|ABC57467.1| CdcH [Methanosphaera stadtmanae DSM 3091] Length = 730 Score = 44.4 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 21/164 (12%), Positives = 59/164 (35%), Gaps = 43/164 (26%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILIDTRKP 110 V+L GP G+GK+ LA ++++ + + + + ++ Sbjct: 241 VLLHGPPGTGKTLLAKAVANETNAHFIVINGPEIMSKYVGGSEEQLRELFEEAEENSPSI 300 Query: 111 VLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLP-- 156 + ++++D + QL +++ + +++ A P + L Sbjct: 301 IFIDELDAIAPKREEVSGDVERRTVAQLLTLMDGLKSRGEVVVIGATNRPDAIDAALRRP 360 Query: 157 ---DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 D ++I +PD + ++++ R + +D + Sbjct: 361 GRFD--------REIEIGVPDKEERKEILEVHT--RHMPLDDDV 394 >gi|15669688|ref|NP_248501.1| AAA ATPase family protein [Methanocaldococcus jannaschii DSM 2661] gi|3915816|sp|Q58889|PRS2_METJA RecName: Full=Putative 26S protease regulatory subunit homolog MJ1494 gi|2826420|gb|AAB99505.1| AAA superfamily ATPase, similar to FtsH [Methanocaldococcus jannaschii DSM 2661] Length = 371 Score = 44.4 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 23/170 (13%), Positives = 59/170 (34%), Gaps = 34/170 (20%) Query: 61 SWPSRVVILVGPSGSGKSCLANIWSDKSR------------STRFSNIAKSLDSILIDTR 108 W + V+ GP G+GK+ +A + ++ + +K + + Sbjct: 151 EWAPKNVLFYGPPGTGKTLMARALATETNSSFILVKAPELIGEHVGDASKMIRELYQRAS 210 Query: 109 KP----VLLEDIDLLDFNDT-------------QLFHIINSIHQYDSSLLMTARTFPVSW 151 + V ++++D + + L ++ I + + + + A P Sbjct: 211 ESAPCIVFIDELDAIGLSREYQSLRGDVSEVVNALLTELDGIKENEGVVTIAATNNPAML 270 Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 P + SR + K+ P+D+ K++ + + L ++ Sbjct: 271 D---PAIRSRFEEEIEFKL--PNDEERLKIMELYAKKMPLPVKANLKEFV 315 >gi|2127780|pir||E64486 ATP-dependent 26S proteosome regulatory subunit 8 homolog - Methanococcus jannaschii Length = 373 Score = 44.4 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 23/170 (13%), Positives = 59/170 (34%), Gaps = 34/170 (20%) Query: 61 SWPSRVVILVGPSGSGKSCLANIWSDKSR------------STRFSNIAKSLDSILIDTR 108 W + V+ GP G+GK+ +A + ++ + +K + + Sbjct: 153 EWAPKNVLFYGPPGTGKTLMARALATETNSSFILVKAPELIGEHVGDASKMIRELYQRAS 212 Query: 109 KP----VLLEDIDLLDFNDT-------------QLFHIINSIHQYDSSLLMTARTFPVSW 151 + V ++++D + + L ++ I + + + + A P Sbjct: 213 ESAPCIVFIDELDAIGLSREYQSLRGDVSEVVNALLTELDGIKENEGVVTIAATNNPAML 272 Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 P + SR + K+ P+D+ K++ + + L ++ Sbjct: 273 D---PAIRSRFEEEIEFKL--PNDEERLKIMELYAKKMPLPVKANLKEFV 317 >gi|332294941|ref|YP_004436864.1| IstB domain protein ATP-binding protein [Thermodesulfobium narugense DSM 14796] gi|332295259|ref|YP_004437182.1| IstB domain protein ATP-binding protein [Thermodesulfobium narugense DSM 14796] gi|332295939|ref|YP_004437862.1| IstB domain protein ATP-binding protein [Thermodesulfobium narugense DSM 14796] gi|332178044|gb|AEE13733.1| IstB domain protein ATP-binding protein [Thermodesulfobium narugense DSM 14796] gi|332178362|gb|AEE14051.1| IstB domain protein ATP-binding protein [Thermodesulfobium narugense DSM 14796] gi|332179042|gb|AEE14731.1| IstB domain protein ATP-binding protein [Thermodesulfobium narugense DSM 14796] Length = 258 Score = 44.4 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 22/141 (15%), Positives = 49/141 (34%), Gaps = 39/141 (27%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID-------------------T 107 ++L+GP G GK+ LA + R ++ ++I Sbjct: 101 ILLIGPPGVGKTHLAVAIGYAATQKRIKTKFVTMADLIIQIDTALSQNRLEQYIKKSINF 160 Query: 108 RKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164 +++++ N+ Q LF I+N ++ S+L+T + W Sbjct: 161 TGLLIIDEFGYFKLNEKQSNLLFQIVNKKYETG-SILITTNLSFIRWK------------ 207 Query: 165 ATVVKISLPDDDFLEKVIVKM 185 +I D+ ++ ++ Sbjct: 208 ----EIFNNDEGLTTAILDRL 224 >gi|296284437|ref|ZP_06862435.1| Microtubule-severing ATPase [Citromicrobium bathyomarinum JL354] Length = 411 Score = 44.4 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 11/73 (15%) Query: 33 PRCLGISRDDL-----LVHSAIEQAVRLIDSW------PSWPSRVVILVGPSGSGKSCLA 81 PR G++ DD +V A E ++ + P + ++ GP G+GK+ LA Sbjct: 148 PREGGLTFDDFGGYKGVVARAKELIETQLERRDELEKIGARPVKGILFTGPPGTGKTHLA 207 Query: 82 NIWSDKSRSTRFS 94 I ++++ ++ + Sbjct: 208 RIIANQAGASFYD 220 >gi|217074084|gb|ACJ85402.1| unknown [Medicago truncatula] Length = 423 Score = 44.4 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 30/201 (14%), Positives = 69/201 (34%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V+L GP G+GK+ +A + ++ +T L + I ++ Sbjct: 203 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEK 262 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH--QYDSSLLMTARTFPVSWG 152 +++ID + + ++N + D + +TA T Sbjct: 263 SPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVTAAT--NRAD 320 Query: 153 VCLPDL-CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 + P L S RL ++ P ++ +++ R++ + + + R Sbjct: 321 ILDPALMRSGRLD--RKIEFPHPTEEARARILQ--IHSRKMNVHPDVNFEELARSTDDFN 376 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ L+ T Sbjct: 377 GAQLKAVCVEAGMLALRRDAT 397 >gi|328771657|gb|EGF81696.1| hypothetical protein BATDEDRAFT_32935 [Batrachochytrium dendrobatidis JAM81] Length = 449 Score = 44.4 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 14/80 (17%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P R ++L GP G+GKS LA + ++ +T FS + L S + + ++ Sbjct: 173 PWRGILLYGPPGTGKSYLAKAIATEADATFFSVSSADLVSKWLGESERLV---------- 222 Query: 123 DTQLFHIINSIHQYDSSLLM 142 QLF + + S++ Sbjct: 223 -KQLFTL---ARENKPSIIF 238 >gi|312377117|gb|EFR24029.1| hypothetical protein AND_11685 [Anopheles darlingi] Length = 834 Score = 44.4 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 37/205 (18%), Positives = 79/205 (38%), Gaps = 60/205 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 234 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 293 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148 + + +++ID + QL +++ + + ++M A P Sbjct: 294 SPAIIFIDEIDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNSIDPA 353 Query: 149 --------VSWGVCLPDLCSRLKAATVVKIS-----LPDDDFLEKVIVKMFADRQIFIDK 195 + +PD RL+ V++I L DD LE++ A+ + Sbjct: 354 LRRFGRFDREIDIGIPDATGRLE---VLRIHTKNMKLADDVDLEQI----AAESHGHVGA 406 Query: 196 KLAAYIVQRMERSLVFAEKLVDKMD 220 LA+ S +++ +KMD Sbjct: 407 DLASLC------SEAALQQIREKMD 425 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 507 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKA 563 >gi|258515784|ref|YP_003192006.1| recombination factor protein RarA [Desulfotomaculum acetoxidans DSM 771] gi|257779489|gb|ACV63383.1| AAA ATPase central domain protein [Desulfotomaculum acetoxidans DSM 771] Length = 422 Score = 44.4 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 36/205 (17%), Positives = 73/205 (35%), Gaps = 43/205 (20%) Query: 67 VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD---F 121 +I GP G+GK+ LANI + KS + + + I ++++ Sbjct: 55 MIFFGPPGTGKTALANIIASMTKSHFETINAVMAGVGDIRR------VVDEAQKRRSYYG 108 Query: 122 NDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 T LF H N + L+ + T + V P L SR + + + Sbjct: 109 EKTVLFIDEIHRFNKAQQDALLPFVENGLITLIGSTTENPMFSVNRPIL-SR---SQLYR 164 Query: 170 ISLPDDDFLEKVIVKMFADRQIFI-------DKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 L + + +++ + DR + D + Y+ E S A ++ ++ Sbjct: 165 FELLSTEAIVRLLQRALQDRNRGLGNYNTGADPEALPYLA---EISNGDARAALNALELA 221 Query: 223 ALSR------GMGITRSLAAEVLKE 241 ++ +T + E L++ Sbjct: 222 VITTVPEENGSRKLTLATVQEALQK 246 >gi|15679634|ref|NP_276751.1| cell division control protein Cdc48 [Methanothermobacter thermautotrophicus str. Delta H] gi|2622767|gb|AAB86112.1| cell division control protein Cdc48 [Methanothermobacter thermautotrophicus str. Delta H] Length = 732 Score = 44.4 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 23/163 (14%), Positives = 61/163 (37%), Gaps = 33/163 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110 P + V++ GP G+GK+ LA +++S + + + S + + Sbjct: 238 PPKGVLMHGPPGTGKTLLAKAVANESDAHFIAINGPEIMSKYVGGSEERLREFFEEAEEN 297 Query: 111 ----VLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + +++ A P + Sbjct: 298 APSIIFIDEIDAIAPKREDVSGEVERRIVAQLLTLMDGLKSRGQVVVIGATNRPDALD-- 355 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L + ++I +PD + ++++ R + + + Sbjct: 356 -PALRRPGRFDREIEIGVPDREERKEILQ--IHTRGMPLADDV 395 >gi|194227313|ref|XP_001489788.2| PREDICTED: similar to Nuclear valosin-containing protein-like (Nuclear VCP-like protein) (NVLp) [Equus caballus] Length = 1175 Score = 44.4 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 56/167 (33%), Gaps = 42/167 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS----------------LDSILID 106 P R V+L GP G GK+ LA+ + + A + + + Sbjct: 297 PPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAATEVVSGVSGESEQKLRELFEQAVSN 356 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151 + +++ID + QL + N+ L++ A P S Sbjct: 357 APCILFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNAAATARVLVIGATNRPDSL 416 Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDK 195 L +A + + +PD+ E+++ + R++ + Sbjct: 417 DPALR------RAGRFDREICLGIPDEASRERILQTLC--RKLRLPD 455 >gi|2492504|sp|Q96372|CDC48_CAPAN RecName: Full=Cell division cycle protein 48 homolog gi|1669660|emb|CAA70565.1| protein of AAA family [Capsicum annuum] Length = 805 Score = 44.4 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 47/121 (38%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP GSGK+ +A ++++ + F SN+ K+ + + Sbjct: 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN 300 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + ++M A P S Sbjct: 301 APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPA 360 Query: 155 L 155 L Sbjct: 361 L 361 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 514 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 570 >gi|330723618|gb|AEC45988.1| chromosomal replication initiation protein [Mycoplasma hyorhinis MCLD] Length = 474 Score = 44.4 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 71/180 (39%), Gaps = 28/180 (15%) Query: 67 VILVGPSGSGKSCLANIW------SDKSRSTRFSNIAKSLDSILIDTRKPVLLED----- 115 + L G SG GK+ + K+ S+ +L + + ++ + + Sbjct: 170 LFLYGSSGIGKTHFLHAIGNEFIKRKKTVYYIHSSAFTTLITNWMIKKENIDINHFVETV 229 Query: 116 --IDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 D+L F++ Q L I+N+ + D +++T+ P G +R Sbjct: 230 CYADVLLFDEIQLLANKTSTMSVLLQIVNNFIENDKQIIITSDKSPEVLGGFEERFITRF 289 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFI---DKKLAAYIVQRMERSLVFAEKLVDKM 219 + +++ S P + KV+ + I +K ++V ++S+ E +V+++ Sbjct: 290 NSGLILEFSKPTKEDFLKVLKYKLEFQNINPEKFEKDALDFLVYN-KKSVREIEGVVNRI 348 >gi|304372806|ref|YP_003856015.1| Chromosomal replication initiator protein dnaA [Mycoplasma hyorhinis HUB-1] gi|304308997|gb|ADM21477.1| Chromosomal replication initiator protein dnaA [Mycoplasma hyorhinis HUB-1] Length = 404 Score = 44.4 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 71/180 (39%), Gaps = 28/180 (15%) Query: 67 VILVGPSGSGKSCLANIW------SDKSRSTRFSNIAKSLDSILIDTRKPVLLED----- 115 + L G SG GK+ + K+ S+ +L + + ++ + + Sbjct: 100 LFLYGSSGIGKTHFLHAIGNEFIKRKKTVYYIHSSAFTTLITNWMIKKENIDINHFVETV 159 Query: 116 --IDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 D+L F++ Q L I+N+ + D +++T+ P G +R Sbjct: 160 CYADVLLFDEIQLLANKTSTMSVLLQIVNNFIENDKQIIITSDKSPEVLGGFEERFITRF 219 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFI---DKKLAAYIVQRMERSLVFAEKLVDKM 219 + +++ S P + KV+ + I +K ++V ++S+ E +V+++ Sbjct: 220 NSGLILEFSKPTKEDFLKVLKYKLEFQNINPEKFEKDALDFLVYN-KKSVREIEGVVNRI 278 >gi|302841577|ref|XP_002952333.1| 26S proteasome regulatory complex [Volvox carteri f. nagariensis] gi|300262269|gb|EFJ46476.1| 26S proteasome regulatory complex [Volvox carteri f. nagariensis] Length = 426 Score = 44.4 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 50/154 (32%), Gaps = 48/154 (31%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA ++++ + I L + ++ Sbjct: 201 PPKGVLMYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSK 260 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQYDSS----LLMTARTF--- 147 +++D + + I+N + +D+ +LM Sbjct: 261 KACIVFFDEVDAIGGARFDDGAGGDNEVQRTMLEIVNQLDGFDARGNVKVLMATNRPDTL 320 Query: 148 -PVSW---------GVCLPDLCSRLKAATVVKIS 171 P LPDL SR + +I Sbjct: 321 DPALLRPGRLDRKVEFSLPDLASR---TQIFQIH 351 >gi|283777738|gb|ADB28898.1| 26S protease regulatory subunit-like protein [Lolium perenne] Length = 433 Score = 44.4 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 27/57 (47%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P + V+L GP G+GK+ +A + ++ +T L + I ++ + +L Sbjct: 213 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFELA 269 >gi|74317514|ref|YP_315254.1| recombination factor protein RarA [Thiobacillus denitrificans ATCC 25259] gi|74057009|gb|AAZ97449.1| putative helicase ATPase [Thiobacillus denitrificans ATCC 25259] Length = 442 Score = 44.4 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 24/171 (14%), Positives = 60/171 (35%), Gaps = 21/171 (12%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS-------------NIAKSLDSILIDTRKPVLL 113 +IL GP G GK+ LA + + + + + ++ + + + + Sbjct: 60 MILWGPPGVGKTTLARLTAQAFGADFIAISAVLSGVKDIREAVERARMNQKLGRATILFV 119 Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 +++ + + F + + A T S+ V L SR A V + Sbjct: 120 DEVHRFNKSQQDAFLPH---VESGLFTFIGATTENPSFEVVGA-LLSR---AQVYVLKSL 172 Query: 174 DDDFLEKVIVKMFAD-RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 D L +++ + + + + + + + L++++D A Sbjct: 173 TPDELGRLMQRALQELPSLKLADGVDKLLAAYADGDARKLLNLLEQLDTAA 223 >gi|60681036|ref|YP_211180.1| insertion sequence IS21-like putative ATP-binding protein [Bacteroides fragilis NCTC 9343] gi|2497390|sp|Q45120|ISTB2_BACFR RecName: Full=Insertion sequence IS21-like putative ATP-binding protein gi|10442746|gb|AAG17461.1|AF303352_2 TnpB [Bacteroides fragilis] gi|458313|gb|AAA21539.1| transposase TnpB [Bacteroides fragilis] gi|60492470|emb|CAH07240.1| insertion sequence IS21-like putative ATP-binding protein [Bacteroides fragilis NCTC 9343] Length = 263 Score = 44.4 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 28/126 (22%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDTR 108 ++LVGPSG+GK+ +A ++ + +L+ +L I Sbjct: 110 LLLVGPSGTGKTFIAAGLVYEAVKAGYEAYLMTLEELLTCLKTKEVSAHAMKTYKRIMKA 169 Query: 109 KPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD------LC 159 + + ++D L + LF ++N + +SL++TA W L D L Sbjct: 170 RLLAIDDATLFPLKREEAVLLFKLVNDFQER-TSLIITANKALTRWLETLEDEAVTAALL 228 Query: 160 SRLKAA 165 RL Sbjct: 229 DRLLYC 234 >gi|312211421|emb|CBX91506.1| similar to AAA family ATPase/60S ribosome export protein Rix7 [Leptosphaeria maculans] Length = 729 Score = 44.4 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 40/197 (20%), Positives = 71/197 (36%), Gaps = 40/197 (20%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRF--------------SNIAKSLDSILIDTRKPVL 112 V+L GP G GK+ LA + +S++ S A + + P + Sbjct: 505 VLLWGPPGCGKTLLAKAVAAESKANFISVKGPELLNKYVGESERALRQLFMRARSSVPCV 564 Query: 113 L--EDIDLLDFNDTQLFH-----IINSIHQY-------DSSLLMTARTFPVSWGVCLPDL 158 + ++ID L + H ++N++ L+ A P + L Sbjct: 565 IFFDEIDALVPRRSTELHEASARVVNTLLTELDGLNPRQGIYLIAATNRPEMIDEAM--L 622 Query: 159 C-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER----SLVFAE 213 RL+ V++ P++ I+K + +D LA + R + S + Sbjct: 623 RPGRLETLLYVELPKPEE---RVGILKALIQQGGAMDIALAE--LGRSDECNNFSGADLQ 677 Query: 214 KLVDKMDNLALSRGMGI 230 L+ K AL RG I Sbjct: 678 SLLRKAGQNALRRGSDI 694 >gi|302335826|ref|YP_003801033.1| ATP-dependent metalloprotease FtsH [Olsenella uli DSM 7084] gi|301319666|gb|ADK68153.1| ATP-dependent metalloprotease FtsH [Olsenella uli DSM 7084] Length = 633 Score = 44.4 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 25/141 (17%), Positives = 46/141 (32%), Gaps = 44/141 (31%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110 R +LVGP G+GK+ LA + ++ T F + + Sbjct: 215 RGALLVGPPGTGKTLLAKAVAGEAGVTFFQISGSEFVEMFVGRGAAKVRDLFKEANKKAP 274 Query: 111 --VLLEDIDLLDF---------ND-----TQLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + +++ID + ++ QL ++ + +++ A P S Sbjct: 275 CIIFIDEIDAVGKKRDMSLNSNDEREQTLNQLLSEMDGFDNHKGIVVLAATNRPESLDQA 334 Query: 152 -----------GVCLPDLCSR 161 V LPDL R Sbjct: 335 LLRPGRFDRRIPVELPDLTGR 355 >gi|258596995|ref|XP_001347366.2| 26S proteasome regulatory subunit 4, putative [Plasmodium falciparum 3D7] gi|254922393|gb|AAN35279.2| 26S proteasome regulatory subunit 4, putative [Plasmodium falciparum 3D7] Length = 448 Score = 44.4 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 31/208 (14%), Positives = 70/208 (33%), Gaps = 45/208 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + VIL GP G+GK+ LA ++++ +T + L + ++ Sbjct: 226 PPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVREMFKVAEEH 285 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTA----RT 146 +++ID + + ++N + + D ++M Sbjct: 286 APSIVFIDEIDAVGTKRYEATSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIDSL 345 Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206 P D +++ PD ++ + + D L +++ + E Sbjct: 346 DPALIRPGRIDRK--------IQLPNPDTKTKRRIFQIHTSKMTMSPDVDLEEFVMSKDE 397 Query: 207 RSLVFAEKLVDKMDNLALSRGM-GITRS 233 S + + + LAL IT++ Sbjct: 398 LSGADIKAICTEAGLLALRERRMKITQA 425 >gi|238063892|ref|ZP_04608601.1| recombination factor protein rarA [Micromonospora sp. ATCC 39149] gi|237885703|gb|EEP74531.1| recombination factor protein rarA [Micromonospora sp. ATCC 39149] Length = 498 Score = 44.4 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 59/157 (37%), Gaps = 28/157 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL---DFND 123 VIL GP G GK+ +A++ + + + A + + +++ Sbjct: 74 VILWGPPGCGKTTIAHLVAHATDRRFVAMSALTAGVKDVRA----VIDTARRQRRSGGPQ 129 Query: 124 TQLF----HIIN--------SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 T LF H + + + + L+ A T + V P L SR ++ + Sbjct: 130 TVLFIDEVHRFSKTQQDSLLAAVEDRTVTLLAATTENPYFSVISP-LLSR---CVLLTLQ 185 Query: 172 LPDDDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQ 203 DD + ++ + AD R + ++ ++V+ Sbjct: 186 PLDDAAVRGLLRRAVADARGLAGAFTLETDAEDHLVR 222 >gi|160944440|ref|ZP_02091668.1| hypothetical protein FAEPRAM212_01950 [Faecalibacterium prausnitzii M21/2] gi|158444222|gb|EDP21226.1| hypothetical protein FAEPRAM212_01950 [Faecalibacterium prausnitzii M21/2] Length = 280 Score = 44.4 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 54/141 (38%), Gaps = 35/141 (24%) Query: 50 EQAVRLIDSWPS-WPSRVVIL-VGPSGSGKSCLANIWSDKSR-----------STRFSNI 96 A R ++ W + L G G+GKS LA ++ + +++ Sbjct: 111 GIARRYVEHWEDMRTDNIGCLFWGGVGTGKSYLAGCIANALMEKEIPVHMTNFALILNDL 170 Query: 97 AKSLDSI-----LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFP 148 A S ++ + ++L+D + + Q+F++I+S ++ L++T Sbjct: 171 AASFENRNEYISRLCRYPLLILDDFGMERGTEYGLEQVFNVIDSRYRSGKPLIVTT---- 226 Query: 149 VSWGVCLPDLC-------SRL 162 + L DL SR+ Sbjct: 227 ---NLTLDDLRNPEDTAHSRI 244 >gi|50426999|ref|XP_462104.1| DEHA2G13024p [Debaryomyces hansenii CBS767] gi|49657774|emb|CAG90590.1| DEHA2G13024p [Debaryomyces hansenii] Length = 427 Score = 44.4 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 63/178 (35%), Gaps = 40/178 (22%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + ++ GP G+GK+ LA + +S +T A L + I ++ Sbjct: 206 PPKGALMYGPPGTGKTLLARACAAQSGATFLKLAAPQLVQMFIGDGAKLVRDAFALAKEK 265 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151 ++++D + + ++N + D ++ A + Sbjct: 266 APTIIFIDELDAIGTKRFDSDKSGDREVQRTMLELLNQLDGFGSDDRVKVLAATNRVDTL 325 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 L L S RL ++ LP ++ E V+ R++ D + + + RS Sbjct: 326 DPAL--LRSGRLD--RKIEFPLPSEEARESVLKIHA--RKLNCDNSSVNW--RELARS 375 >gi|320169867|gb|EFW46766.1| proteasome 26S ATPase subunit 3 [Capsaspora owczarzaki ATCC 30864] Length = 436 Score = 44.4 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 26/201 (12%), Positives = 66/201 (32%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + +L GP G+GK+ +A + ++ +T L + I ++ Sbjct: 216 PPKGCLLYGPPGTGKTLMARACAAQTNATYLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 275 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151 ++++D + + + ++N + D ++ A Sbjct: 276 APAIIFIDELDAIGTKRFDSDKAGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRIDIL 335 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ LP ++ +++ R++ + + + R Sbjct: 336 DPAL--LRSGRLD--RKIEFPLPTEEARARIMQ--IHSRKMNVSPDVNYEELARCTDDFN 389 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A ++ ++ T Sbjct: 390 GAMLKAVCVEAGMIALRREAT 410 >gi|301062625|ref|ZP_07203257.1| ATPase, AAA family [delta proteobacterium NaphS2] gi|300443305|gb|EFK07438.1| ATPase, AAA family [delta proteobacterium NaphS2] Length = 741 Score = 44.4 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 65/173 (37%), Gaps = 29/173 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIA-----KSLDSILIDTRKPVLLEDIDLLDF 121 VI GP G+GK+ LA + ++ +RS A K L + D R+ ED + F Sbjct: 49 VIFHGPPGTGKTTLAMVIANTTRSRFIPLNAVLTGVKDLREAISDARRHREEEDRRTILF 108 Query: 122 NDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 D H N + + +L+ A T + V P L SR + V ++ Sbjct: 109 VDEI--HRWNKSQQDALLPWVENGTVILVGATTENPYFSVNSP-LVSR---SRVFRLEPL 162 Query: 174 DDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 L V+++ DR + + ++V A +++ + Sbjct: 163 SKADLRTVLIRALTDRENGYGTLNVKVHPDALEHLVNVAG---GDARSVLNAL 212 >gi|206900704|ref|YP_002250508.1| ATPase, AAA family [Dictyoglomus thermophilum H-6-12] gi|206739807|gb|ACI18865.1| ATPase, AAA family [Dictyoglomus thermophilum H-6-12] Length = 431 Score = 44.4 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 34/202 (16%), Positives = 71/202 (35%), Gaps = 37/202 (18%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I+ GP GSGK+ L+ + + + A + + +++L T Sbjct: 52 PSLIVYGPPGSGKTTLSILLAKAINAEFIELNAAIVGVQELKEALQRARRNLELYGKR-T 110 Query: 125 QLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N + + + +L+ T + L SR ++++ Sbjct: 111 VLFLDEIHHFNRLQQDVLLPFVEKGTIILIGATTENPFFALNTT---LLSR---CRLIEL 164 Query: 171 SLPDDDFLEKVIVKMF--ADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 ++ +EK++ + DR + I IV+ A ++ ++ + Sbjct: 165 KPLSNENIEKILRRALEDEDRGLGKKKLQITDDAIEEIVRFAN---GDARIALNTLELAS 221 Query: 224 -----LSRGM-GITRSLAAEVL 239 L G I R + EV+ Sbjct: 222 FMASPLEDGRLMIDRDVVKEVI 243 >gi|159490282|ref|XP_001703109.1| 26S proteasome regulatory subunit [Chlamydomonas reinhardtii] gi|158270805|gb|EDO96639.1| 26S proteasome regulatory subunit [Chlamydomonas reinhardtii] Length = 294 Score = 44.4 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 25/61 (40%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G+GK+ LA + + T L I ++L + +D D L Sbjct: 134 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVLMATNRIDILDAAL 193 Query: 127 F 127 Sbjct: 194 L 194 >gi|6760428|gb|AAF28347.1| calmodulin-binding protein [Arabidopsis thaliana] gi|6760430|gb|AAF28348.1| calmodulin-binding protein [Arabidopsis thaliana] Length = 1022 Score = 44.4 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 47/121 (38%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106 P++ V++ GP G+GK+ LA ++ S FS + + S Sbjct: 417 PTKGVLIHGPPGTGKTSLARTFARHSGVNFFSVNGPEIISQYLGESEKALDEVFRSASNA 476 Query: 107 TRKPVLLEDIDLLD-----FNDT-------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 T V ++D+D + + L ++++ I + D +++ A P S Sbjct: 477 TPAAVFIDDLDAIAPARKEGGEELSQRMVATLLNLMDGISRTDGVVVIAATNRPDSIEPA 536 Query: 155 L 155 L Sbjct: 537 L 537 >gi|328770250|gb|EGF80292.1| hypothetical protein BATDEDRAFT_1279 [Batrachochytrium dendrobatidis JAM81] Length = 464 Score = 44.4 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 70/195 (35%), Gaps = 44/195 (22%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK----------------P 110 V+L GP G+GK+ LA + ++ F D + + Sbjct: 76 VLLYGPPGTGKTHLARAIAGEAGVPFFQMSGSEFDELYVGVGARRVRELFAAAKKRAPCI 135 Query: 111 VLLEDIDLLD-----FNDTQLFHIINSIHQY-------DSSLLMTARTFPVSWGVCL--P 156 V ++++D + + + + +N + + +L+ A P S L P Sbjct: 136 VFIDELDAVGSKRSTKDQSYMRQTLNQLLVELDGFSPTEGVILIAATNTPDSLDKALVRP 195 Query: 157 ---DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213 D RL V + LPD +++ R + +D+ + A I+ R A Sbjct: 196 GRFD---RL-----VPVPLPDVKGRTQILKVHM--RGVQMDRGVDASIIARGTPGFSGA- 244 Query: 214 KLVDKMDNLALSRGM 228 L + +++ A+ Sbjct: 245 DLANIINHAAIKASK 259 >gi|291402323|ref|XP_002717424.1| PREDICTED: nuclear VCP-like [Oryctolagus cuniculus] Length = 869 Score = 44.4 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 60/167 (35%), Gaps = 42/167 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109 P R V+L GP G GK+ LA+ + + A + S + + Sbjct: 297 PPRGVLLHGPPGCGKTLLAHAIAGELNLPILKVAAPEVVSGVSGESEQKLRELFTQAVSN 356 Query: 110 ---PVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151 V +++ID + QL + N++ L++ A P S Sbjct: 357 APCIVFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNMPATAQVLVIGATNRPDSL 416 Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDK 195 P L +A + + +PD+ E+++ + R++ + + Sbjct: 417 D---PALR---RAGRFDREICLGIPDEASRERILQTLC--RKLRLPE 455 >gi|289619637|emb|CBI53920.1| unnamed protein product [Sordaria macrospora] Length = 820 Score = 44.4 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 30/207 (14%), Positives = 69/207 (33%), Gaps = 54/207 (26%) Query: 45 VHSAIEQAVRL-------IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIA 97 V +++ +AVR+ + + + P + +L GP G K+ A + +S F+ Sbjct: 536 VKTSLRRAVRMSTEPSHVLSRFFARPPKGFLLYGPPGCSKTMAAQAMATESGLNFFAVKG 595 Query: 98 KSLDSILIDTRKPVL----------------LEDIDLLDFNDTQ---------------- 125 L ++ + + + ++ID + Sbjct: 596 AELLNMYVGESERAVRRLFQRAREVAPSMIFFDEIDSIAGQRAGFGHGGGSSTSGGSSSG 655 Query: 126 ---LFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT---VVKISLPDDD 176 L ++N +++ A P + L L+ ++ +S PD++ Sbjct: 656 LNVLTTLLNEMDGFEALTGVVVLAATNRPQALDPAL------LRPGRFDELIYVSPPDEE 709 Query: 177 FLEKVIVKMFADRQIFIDKKLAAYIVQ 203 + K RQ+ I ++ A + Sbjct: 710 ARAAIFRKEAEKRQMLIGEEEIARLAT 736 >gi|301111406|ref|XP_002904782.1| cell division cycle protein 48 [Phytophthora infestans T30-4] gi|262095112|gb|EEY53164.1| cell division cycle protein 48 [Phytophthora infestans T30-4] Length = 682 Score = 44.4 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 21/34 (61%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNI 96 P + V+L GP GSGK+ LAN +++ R ++ Sbjct: 384 PPKGVLLTGPPGSGKTHLANAIAEEVRRRGLASF 417 >gi|145258000|ref|XP_001401914.1| AAA family ATPase [Aspergillus niger CBS 513.88] gi|134074518|emb|CAK38812.1| unnamed protein product [Aspergillus niger] Length = 531 Score = 44.4 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 40/251 (15%), Positives = 83/251 (33%), Gaps = 45/251 (17%) Query: 20 QPKNKEEQLFFSFPRCLG-ISRDDL----LVHSAIEQAVRLIDSWPSWPSRVVILVGPSG 74 +PK Q P + + DD+ LV LI+ +IL G G Sbjct: 110 KPKVSALQKAAPLPERMRPRTLDDVCGQELVGP-NGVLRGLIEQDR---VPSMILWGGPG 165 Query: 75 SGKSCLANIWSDKSRSTRFS-------------NIAKSLDSILIDTRKPVLL-EDIDLLD 120 +GK+ +A + + S + + + + RK ++ ++I Sbjct: 166 TGKTTIARVIASMVGSRFVEINSTSSGVAECKKIFSDAKSELGLTGRKTIIFCDEIHRFS 225 Query: 121 FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 + +F + L+ A T S+ V L SR +S D+ ++ Sbjct: 226 KSQQDVFL---GPVESGQVTLIGATTENPSFKVQNA-LLSR---CRTFTLSKLTDEDIKS 278 Query: 181 VIVKMFADRQIF------IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG----- 229 ++ + +D++L Y+ + + A ++ ++ Sbjct: 279 ILHRALRLEGPNYSPSELVDEELIDYLARFAD---GDARTSLNLLELAMDLSKRPGMTKD 335 Query: 230 -ITRSLAAEVL 239 I RSL ++ Sbjct: 336 EIKRSLTKTLV 346 >gi|148240504|ref|YP_001225891.1| fused recombination factor protein RarA/unknown domain-containing protein [Synechococcus sp. WH 7803] gi|147849043|emb|CAK24594.1| ATPase related to the helicase subunit of the Holliday junction resolvase [Synechococcus sp. WH 7803] Length = 737 Score = 44.4 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 64/170 (37%), Gaps = 24/170 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA I ++ +R+ S A + + ++ T L Sbjct: 61 LILHGPPGVGKTTLARIIANHTRAHFSSLNAVLAGVKDLRAEVSEAGQRLERHGLR-TIL 119 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H NS + + L+ A T + V L SR + + ++ Sbjct: 120 FIDEVHRFNSAQQDALLPWVENGTLTLIGATTENPYFEVNKA-LVSR---SRLFRLQALT 175 Query: 175 DDFLEKVI-------VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 L K++ + + DR+I I+ + AA++V ++ Sbjct: 176 PGDLSKLLNSALKDPERGYGDRKIKIEPEAAAHLVDVASGDARSLLNALE 225 >gi|323464281|gb|ADX76434.1| ATPase AAA family protein [Staphylococcus pseudintermedius ED99] Length = 423 Score = 44.4 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 63/180 (35%), Gaps = 34/180 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117 +I GP G GK+ +A + + + ++ +D + + +LL++I Sbjct: 43 MIFYGPPGIGKTSIAQAIAGSTAFKFRQLNAVTNTKKDMQMIVDEAKMSGQVILLLDEIH 102 Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 L D L H+ N +L+ T + P + SR A + ++ Sbjct: 103 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELFPL 151 Query: 174 DDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 D D ++ + D R + ID Y + S ++ ++ LS Sbjct: 152 DKDDIKVALNHALEDEERGLKQFDASIDDDAFEYFATQ---SQGDVRSALNALELAVLSA 208 >gi|302680609|ref|XP_003029986.1| hypothetical protein SCHCODRAFT_57429 [Schizophyllum commune H4-8] gi|300103677|gb|EFI95083.1| hypothetical protein SCHCODRAFT_57429 [Schizophyllum commune H4-8] Length = 552 Score = 44.4 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 55/142 (38%), Gaps = 21/142 (14%) Query: 61 SWPSRVVILVGPSGSGKSCLANIWSDKSRST-------------RFSNIAKSLDSILIDT 107 + + +I GP G GK+ LA + + + S + ++ +++++ Sbjct: 115 NGAAGSMIFWGPPGCGKTTLARLIAKHTGSIFRELSATEAGIKDVRAVFEEAKNTLMLTG 174 Query: 108 RKPVL-LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 RK VL L++I + +F + L+ A T S+ + P L SR Sbjct: 175 RKSVLFLDEIHRFNKAQQDIFLPY---VEQGYIQLIGATTENPSFKLVSP-LLSR---CR 227 Query: 167 VVKISLPDDDFLEKVIVKMFAD 188 V + DD ++ +I Sbjct: 228 VFVLERLTDDDIKTIIHHAIQR 249 >gi|297529269|ref|YP_003670544.1| ATPase AAA [Geobacillus sp. C56-T3] gi|297252521|gb|ADI25967.1| AAA ATPase central domain protein [Geobacillus sp. C56-T3] Length = 431 Score = 44.4 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 28/176 (15%), Positives = 65/176 (36%), Gaps = 22/176 (12%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFS---------NIAKSLDSILIDTRKPVLLED 115 ++L G G+GK+ LA + + + I +++++ + +++ Sbjct: 43 PSLLLYGEPGTGKTSLAYAIARTAGREWVAINATTAGKKEIEEAVEAARWSGNVLLFIDE 102 Query: 116 IDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 I L+ + H+ + L+ A T V P + SR +K P Sbjct: 103 IHRLNKAQQDVLLPHL-----ESGLVTLIGATTENPFHEVN-PAIRSRCGQIQQLKPLKP 156 Query: 174 DDDFLEKVIVKMFAD--RQIFIDKKLAA-YIVQRMERSLVFAEKLVDKMDNLALSR 226 DD L ++ + AD R + + ++ R+ + ++ + A++ Sbjct: 157 DD--LMIILKRALADPERGVGEPPVVIDESLLWRIAEAAGGDARVALSLLEAAVAA 210 >gi|290769876|gb|ADD61648.1| putative protein [uncultured organism] gi|291549543|emb|CBL25805.1| phage DNA replication protein (predicted replicative helicase loader) [Ruminococcus torques L2-14] Length = 275 Score = 44.4 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 18/124 (14%), Positives = 43/124 (34%), Gaps = 21/124 (16%) Query: 50 EQAVRLIDSWP--SWPSRVVILVGPSGSGKSCLANIWSDKSR-----------STRFSNI 96 A ++ W + ++L G G+GKS A ++ + +++ Sbjct: 107 GMAHSYVERWEQMKEGNHGLLLWGKVGTGKSYFAGCIANALMEQEIPVRMTNFALILNDL 166 Query: 97 AKSLDSI-----LIDTRKPVLLEDIDLLDFNDTQLFHIINSI---HQYDSSLLMTARTFP 148 A S + + ++++D + + L + N I ++ L++T P Sbjct: 167 AASFEGRNEYIDRLCRYPLLIIDDFGMERGTEYGLEQVYNVIDSRYRSGKPLIVTTNHTP 226 Query: 149 VSWG 152 Sbjct: 227 DMLE 230 >gi|227548587|ref|ZP_03978636.1| ATP-binding protein [Corynebacterium lipophiloflavum DSM 44291] gi|227079338|gb|EEI17301.1| ATP-binding protein [Corynebacterium lipophiloflavum DSM 44291] Length = 263 Score = 44.4 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 46/144 (31%), Gaps = 31/144 (21%) Query: 30 FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA---NIWSD 86 F F + R A W + + V+ L GP G+GK+ LA + + Sbjct: 81 FDFSTQPALDRA--------RIARLETGGWITEAANVIFL-GPPGTGKTHLATGLGVIAA 131 Query: 87 KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFNDTQ---LFH 128 + + A + L ++++++ + F Sbjct: 132 RQGYRVAFDTAAGWITRLTQAHSIGGLTTLLAKLNRYHLLIIDEVGYVPIEAEAANLFFQ 191 Query: 129 IINSIHQYDSSLLMTARTFPVSWG 152 ++ S SL+MT+ WG Sbjct: 192 LV-SNRYERGSLIMTSNLPFSRWG 214 >gi|165975898|ref|YP_001651491.1| recombination factor protein RarA [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165875999|gb|ABY69047.1| putative ATPase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 428 Score = 44.4 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 41/206 (19%), Positives = 72/206 (34%), Gaps = 35/206 (16%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 S +I GP G GK+ LA I + + R S + + I + ++ Sbjct: 31 SHSMIFWGPPGIGKTTLAEIIAHHFDAEVERLSAVTSGVKEIREAIERA----KLNRQTG 86 Query: 122 NDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATV 167 T LF H N Q D +++ T L SR A + Sbjct: 87 RRTLLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNA---LLSR---AKI 140 Query: 168 VKISLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 + + +V+ D R + +I+ + + + FA ++ M Sbjct: 141 YILKPLQAVEIAQVLTNALYDKERGLGNESYYIEDNVIELLADYVNGDARFALNCLELMS 200 Query: 221 NLALS--RGMGITRSLAAEVLKETQQ 244 ++A +G + ++L AEVL E Q Sbjct: 201 DMAEISPQGKHLNKALLAEVLGERQA 226 >gi|237833247|ref|XP_002365921.1| cell division protein 48, putative [Toxoplasma gondii ME49] gi|211963585|gb|EEA98780.1| cell division protein 48, putative [Toxoplasma gondii ME49] gi|221488381|gb|EEE26595.1| cell division protein, putative [Toxoplasma gondii GT1] gi|221508884|gb|EEE34453.1| cell division protein, putative [Toxoplasma gondii VEG] Length = 811 Score = 44.4 bits (104), Expect = 0.015, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 62/164 (37%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R V+L GP GSGK+ +A ++++ + F SN+ ++ + + Sbjct: 243 PPRGVLLYGPPGSGKTLIAKAVANETGAFFFLINGPEVMSKMAGEAESNLRRAFEEAEKN 302 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + +++ A Sbjct: 303 APAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGLKGRGQVVVIGAT---NRQNSI 359 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PDD+ +++ R + + + Sbjct: 360 DPALR-RFGRFDREIDIGVPDDNGRLEIL--RIHTRNMKLANDV 400 Score = 38.2 bits (88), Expect = 0.91, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 1/66 (1%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL-DF 121 PSR V+ GP G GK+ LA + + + S L ++ + + E D Sbjct: 516 PSRGVLFYGPPGCGKTLLAKAVASECSANFVSIKGPELLTMWFGESEANVREVFDKARAA 575 Query: 122 NDTQLF 127 + LF Sbjct: 576 SPCVLF 581 >gi|297588295|ref|ZP_06946938.1| AAA family ATPase [Finegoldia magna ATCC 53516] gi|297573668|gb|EFH92389.1| AAA family ATPase [Finegoldia magna ATCC 53516] Length = 431 Score = 44.4 bits (104), Expect = 0.015, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 68/181 (37%), Gaps = 31/181 (17%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLL 119 +I GP G+GK+ LA I S+++ S S+ K + ++ + + + + + Sbjct: 53 PSMIFYGPPGTGKTTLAEIISNQTNSLFERLSAISSGVKDIREVISTAKNNLSMYNKKTV 112 Query: 120 DF-NDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 F ++ H N + + L+ A T + V L SR ++++ Sbjct: 113 LFIDEI---HRFNKSQQDALLGYVEDGTITLIGATTENPFFEVNKA-LLSR---CQIIEL 165 Query: 171 SLPDDDFLEKVIV------KMFADRQIFIDKKLAAYIVQRME---RS-LVFAEKLVDKMD 220 D + +I K + I I++K +V RS L E V+ D Sbjct: 166 KPLTDTDIRNIIENALTEDKKLREMNIQINEKAIDVLVNSANGDARSALNALEIAVESTD 225 Query: 221 N 221 Sbjct: 226 Q 226 >gi|312134908|ref|YP_004002246.1| AAA ATPase central domain-containing protein [Caldicellulosiruptor owensensis OL] gi|311774959|gb|ADQ04446.1| AAA ATPase central domain protein [Caldicellulosiruptor owensensis OL] Length = 441 Score = 44.4 bits (104), Expect = 0.015, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 72/175 (41%), Gaps = 32/175 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125 +IL GP G+GK+ +A++ ++ + T F I ++ + R ++E+ ++F+ T Sbjct: 55 IILYGPPGTGKTTIAHVIANATGKT-FKTINATIAGVNDIKR---IIEEA-KIEFSQTGK 109 Query: 126 ---LF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N + + +L+ A T + V L SR + V ++ Sbjct: 110 KTILFIDEIHRFNKLQQDALLPSVEEGVIILIGATTENPFYEVNKA-LVSR---SLVFEL 165 Query: 171 SLPDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDK 218 ++ + K+I + D+ I ID +I + A +++ Sbjct: 166 FPLKEEDILKIIERAITDKENGLGELNIQIDDNAKKFIAKLSGGDARVALNILEA 220 >gi|302821103|ref|XP_002992216.1| hypothetical protein SELMODRAFT_448703 [Selaginella moellendorffii] gi|300139983|gb|EFJ06713.1| hypothetical protein SELMODRAFT_448703 [Selaginella moellendorffii] Length = 1086 Score = 44.4 bits (104), Expect = 0.015, Method: Composition-based stats. Identities = 33/204 (16%), Positives = 68/204 (33%), Gaps = 55/204 (26%) Query: 67 VILVGPSGSGKSCLANIWSDKSR------STRFS----------------NIAKSLDSIL 104 ++L GP+ GK+ LA + + + R + +++ + Sbjct: 486 ILLYGPAACGKTQLALSLARELGENKQIQAHRVILKCAELVGEAESPTKRRLKEAVLGAI 545 Query: 105 IDTRKPVLLEDIDLLDFNDTQLFHII---------------------NSIHQYDSSLLMT 143 V+L+D+D LF I N+ + L T Sbjct: 546 QHAPSLVVLDDLD-------ALFSIHEEGGVDMSATSLAEYLSDVMDNAQRTASVAFLAT 598 Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203 A P S + L S + V++ P E ++ ++ A R K + + + Sbjct: 599 AS-GPKSLPLS---LRSSGRFDFSVELEPPGIREREGILEQIIASRGFECPKTITSRVAA 654 Query: 204 RME-RSLVFAEKLVDKMDNLALSR 226 + + E +VD+ + + +R Sbjct: 655 KCDGYDANDLEIMVDRALHASSAR 678 >gi|255761620|gb|ACU32853.1| cell division cycle 48 protein [Toxoplasma gondii] Length = 806 Score = 44.4 bits (104), Expect = 0.015, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 62/164 (37%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R V+L GP GSGK+ +A ++++ + F SN+ ++ + + Sbjct: 238 PPRGVLLYGPPGSGKTLIAKAVANETGAFFFLINGPEVMSKMAGEAESNLRRAFEEAEKN 297 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + +++ A Sbjct: 298 APAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGLKGRGQVVVIGAT---NRQNSI 354 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PDD+ +++ R + + + Sbjct: 355 DPALR-RFGRFDREIDIGVPDDNGRLEIL--RIHTRNMKLANDV 395 Score = 38.2 bits (88), Expect = 0.91, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 1/66 (1%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL-DF 121 PSR V+ GP G GK+ LA + + + S L ++ + + E D Sbjct: 511 PSRGVLFYGPPGCGKTLLAKAVASECSANFVSIKGPELLTMWFGESEANVREVFDKARAA 570 Query: 122 NDTQLF 127 + LF Sbjct: 571 SPCVLF 576 >gi|227824827|ref|ZP_03989659.1| recombination factor protein rarA [Acidaminococcus sp. D21] gi|226905326|gb|EEH91244.1| recombination factor protein rarA [Acidaminococcus sp. D21] Length = 440 Score = 44.4 bits (104), Expect = 0.015, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 54/153 (35%), Gaps = 26/153 (16%) Query: 54 RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPV 111 LI+ +I GP G GK+ LA I + +++ FS + + I ++ Sbjct: 42 NLIERDQ---ISSMIFWGPPGVGKTTLAKIIAHTTKASFITFSAVTSGIKEIRAVMQRA- 97 Query: 112 LLEDIDLLDFNDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLC 159 D T +F H N + S +L+ A T S+ V L Sbjct: 98 ---DEQTRFGQRTIVFIDEIHRFNRAQQDAFLPFVEKGSIILIGATTENPSFEVNGA-LL 153 Query: 160 SRLKAATVVKISLPDDDFLEKVIVKMFAD-RQI 191 SR V + + + ++ + D R + Sbjct: 154 SR---CKVFVLKELTTEDIMALLKRALTDSRGL 183 >gi|189239513|ref|XP_975553.2| PREDICTED: similar to spastin CG5977-PA [Tribolium castaneum] Length = 690 Score = 44.4 bits (104), Expect = 0.015, Method: Composition-based stats. Identities = 32/150 (21%), Positives = 56/150 (37%), Gaps = 55/150 (36%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P+R ++L GP G+GK+ LA + + R+T FS A SL S + + ++ Sbjct: 447 PARGLLLFGPPGNGKTLLARAVATECRATFFSISAASLTSKYVGEGEKMVRALFAIAREL 506 Query: 113 ------LEDIDLLDFNDTQLFHIINSIHQYDSSL---------------------LMTAR 145 ++++D L ++ N+ H+ L +M A Sbjct: 507 QPSIIFIDEVDSL-LSERS-----NNEHEASRRLKTEFLVEFDGLPSNPDSERVVVMAAT 560 Query: 146 TFPVSWG------------VCLPDLCSRLK 163 P V LPDL +R++ Sbjct: 561 NRPQELDEAALRRFPKRVYVTLPDLETRIR 590 >gi|145607716|ref|XP_365898.2| hypothetical protein MGG_10118 [Magnaporthe oryzae 70-15] gi|145015240|gb|EDJ99776.1| hypothetical protein MGG_10118 [Magnaporthe oryzae 70-15] Length = 1337 Score = 44.4 bits (104), Expect = 0.015, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 16/34 (47%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 IL GP G+GK+ LA + + + + + Sbjct: 1027 AILYGPPGTGKTHLARVVAASAGTNLIVATPADI 1060 >gi|312136744|ref|YP_004004081.1| proteasome-activating nucleotidase [Methanothermus fervidus DSM 2088] gi|311224463|gb|ADP77319.1| Proteasome-activating nucleotidase [Methanothermus fervidus DSM 2088] Length = 410 Score = 44.4 bits (104), Expect = 0.015, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 27/57 (47%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P + V+L GP G+GK+ LA + ++ +T +A I ++ E +L Sbjct: 184 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIKVVASEFVRKYIGEGARLVREVFELA 240 >gi|322709309|gb|EFZ00885.1| cell division control protein Cdc48 [Metarhizium anisopliae ARSEF 23] Length = 818 Score = 44.4 bits (104), Expect = 0.015, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 64/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R V+L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 252 PPRGVLLYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 311 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + + ++M A P S Sbjct: 312 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSID-- 369 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + V I +PD +++ + + + + Sbjct: 370 -PALR-RFGRFDREVDIGVPDPTGRLEILQ--IHTKNMKLGDDV 409 >gi|254442732|ref|ZP_05056208.1| ATPase, AAA family protein [Verrucomicrobiae bacterium DG1235] gi|198257040|gb|EDY81348.1| ATPase, AAA family protein [Verrucomicrobiae bacterium DG1235] Length = 496 Score = 44.4 bits (104), Expect = 0.015, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 70/186 (37%), Gaps = 28/186 (15%) Query: 65 RVVILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 ++ GP G GK+ +A + KSR R + + ++ + +ED D + F Sbjct: 111 GSLLFYGPPGCGKTSMAEAIAGETKSRFVRINAVMSNVAELREILGIARRMEDKDTVLFI 170 Query: 123 DTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 D H N + + L+ A T + V P L SR + + +++ D Sbjct: 171 DEI--HRFNKSQQDLLLPDVEAGNIRLIGATTHNPGFYVNAP-LLSR---SHLFRLNPHD 224 Query: 175 DDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA--LS 225 D + + K D R+I + + + + + ++ ++ +A L Sbjct: 225 VDTVAATLAKALTDEERGLGERKITAVAGVLEGLAKLCD---GDLRRGLNALEVIAMGLE 281 Query: 226 RGMGIT 231 G IT Sbjct: 282 EGGEIT 287 >gi|256810841|ref|YP_003128210.1| AAA ATPase central domain protein [Methanocaldococcus fervens AG86] gi|256794041|gb|ACV24710.1| AAA ATPase central domain protein [Methanocaldococcus fervens AG86] Length = 371 Score = 44.4 bits (104), Expect = 0.015, Method: Composition-based stats. Identities = 24/170 (14%), Positives = 59/170 (34%), Gaps = 34/170 (20%) Query: 61 SWPSRVVILVGPSGSGKSCLANIWSDKSR------------STRFSNIAKSLDSILIDTR 108 W + V+ GP G+GK+ +A + ++ + +K + + Sbjct: 151 EWAPKNVLFYGPPGTGKTLMARALATETNSSFILVKAPELIGEHVGDASKMIRELYQRAS 210 Query: 109 KP----VLLEDIDLLDFNDT-------------QLFHIINSIHQYDSSLLMTARTFPVSW 151 + V ++++D + + L ++ I + + + + A P Sbjct: 211 ESAPCIVFIDELDAIGLSREYQSLRGDVSEVVNALLTELDGIKENEGVVTIAATNNPAML 270 Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 P + SR + K+ P+D+ K++ I + L ++ Sbjct: 271 D---PAIRSRFEEEIEFKL--PNDEERLKIMELYAKKMPIPVKANLKEFV 315 >gi|77360654|ref|YP_340229.1| recombination factor protein RarA [Pseudoalteromonas haloplanktis TAC125] gi|76875565|emb|CAI86786.1| putative polynucleotide enzyme with nucleotide triphosphate hydrolase domain [Pseudoalteromonas haloplanktis TAC125] Length = 447 Score = 44.4 bits (104), Expect = 0.015, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 5/74 (6%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA I ++ + + A + I E++ T + Sbjct: 52 LILWGPPGVGKTTLAQIIANHADAALIQMSAVTAGVKDIRDSVTQARENLQS-RGQRTLM 110 Query: 127 F----HIINSIHQY 136 F H N Q Sbjct: 111 FVDEVHRFNKSQQD 124 >gi|124511780|ref|XP_001349023.1| cell division cycle ATPase, putative [Plasmodium falciparum 3D7] gi|45645005|sp|P46468|CDAT_PLAF7 RecName: Full=Putative cell division cycle ATPase gi|23498791|emb|CAD50861.1| cell division cycle ATPase, putative [Plasmodium falciparum 3D7] Length = 1229 Score = 44.4 bits (104), Expect = 0.015, Method: Composition-based stats. Identities = 25/141 (17%), Positives = 48/141 (34%), Gaps = 43/141 (30%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILIDT 107 ++ ++L GP G GK+ LA +++ ++ S N+ D + Sbjct: 968 NKGILLYGPPGCGKTLLAKAIANECKANFISVKGPELLTMWFGESEANVRDLFDKARAAS 1027 Query: 108 RKPVLLEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWG-- 152 + ++ID L Q+ I+ I++ + ++ A P Sbjct: 1028 PCIIFFDEIDSLAKERNSNTNNDASDRVINQILTEIDGINEKKTIFIIAATNRPDILDKA 1087 Query: 153 ------------VCLPDLCSR 161 + LPDL SR Sbjct: 1088 LTRPGRLDKLIYISLPDLKSR 1108 >gi|327264770|ref|XP_003217184.1| PREDICTED: transitional endoplasmic reticulum ATPase-like [Anolis carolinensis] Length = 975 Score = 44.4 bits (104), Expect = 0.015, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 48/121 (39%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 398 PPRGILLYGPPGTGKTLVARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 457 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + ++++D + QL +++ + Q ++M A P S Sbjct: 458 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRSHVIVMAATNRPNSIDPA 517 Query: 155 L 155 L Sbjct: 518 L 518 Score = 39.4 bits (91), Expect = 0.53, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 671 PSRGVLFYGPPGCGKTLLAKAIANECQANFVSIKGPELLTMWFGESEANVRDVFDKA 727 >gi|309810782|ref|ZP_07704588.1| recombination factor protein RarA [Dermacoccus sp. Ellin185] gi|308435262|gb|EFP59088.1| recombination factor protein RarA [Dermacoccus sp. Ellin185] Length = 457 Score = 44.4 bits (104), Expect = 0.015, Method: Composition-based stats. Identities = 40/191 (20%), Positives = 74/191 (38%), Gaps = 32/191 (16%) Query: 54 RLIDSWPSWPSRV-VILVGPSGSGKSCLANIWSDKS--RSTRFSNIAKSLDSILIDTRKP 110 RLI+ + IL GP G+GK+ LA++ ++ + R S I + + + Sbjct: 54 RLIEGQAGAAGPMSAILWGPPGTGKTTLAHLAANSAERRFVELSAITAGVKDVRQAMEEA 113 Query: 111 ------------VLLEDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 + L++I L + + +L+ A T S+ V P Sbjct: 114 GRHLAMYGRSTVLFLDEIHRFSKAQQDALL----PGVENRTVILVAATTENPSFSVIAP- 168 Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQRMERSLVFA 212 L SR + +V ++ DD + VI D R + +D ++V RM + A Sbjct: 169 LLSR---SVLVTLTSLDDAQIADVIGAALVDERGLDERFTLDDDARDHLV-RM--AGGDA 222 Query: 213 EKLVDKMDNLA 223 + + ++ A Sbjct: 223 RRALTALEAGA 233 >gi|290956155|ref|YP_003487337.1| restriction protein [Streptomyces scabiei 87.22] gi|260645681|emb|CBG68772.1| putative restriction enzyme [Streptomyces scabiei 87.22] Length = 604 Score = 44.4 bits (104), Expect = 0.015, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 7/54 (12%) Query: 30 FSFPRCLGISRDDLLVHSA--IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 P DLLVH A + + L+ W R ++L GP G+GK+ LA Sbjct: 318 LELPEPTDELAADLLVHDAEWLREVRDLL-----WDERQLVLYGPPGTGKTYLA 366 >gi|295402804|ref|ZP_06812740.1| IstB domain protein ATP-binding protein [Geobacillus thermoglucosidasius C56-YS93] gi|295402902|ref|ZP_06812826.1| IstB domain protein ATP-binding protein [Geobacillus thermoglucosidasius C56-YS93] gi|312109433|ref|YP_003987749.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1] gi|312109577|ref|YP_003987893.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1] gi|312109798|ref|YP_003988114.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1] gi|312110830|ref|YP_003989146.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1] gi|312110848|ref|YP_003989164.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1] gi|312111361|ref|YP_003989677.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1] gi|312111373|ref|YP_003989689.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1] gi|312111416|ref|YP_003989732.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1] gi|312111472|ref|YP_003989788.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1] gi|312111599|ref|YP_003989915.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1] gi|312111955|ref|YP_003990271.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1] gi|312111957|ref|YP_003990273.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1] gi|312112242|ref|YP_003990558.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1] gi|312112419|ref|YP_003990735.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1] gi|312112549|ref|YP_003990865.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1] gi|294975060|gb|EFG50714.1| IstB domain protein ATP-binding protein [Geobacillus thermoglucosidasius C56-YS93] gi|294975150|gb|EFG50792.1| IstB domain protein ATP-binding protein [Geobacillus thermoglucosidasius C56-YS93] gi|311214534|gb|ADP73138.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1] gi|311214678|gb|ADP73282.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1] gi|311214899|gb|ADP73503.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1] gi|311215931|gb|ADP74535.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1] gi|311215949|gb|ADP74553.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1] gi|311216462|gb|ADP75066.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1] gi|311216474|gb|ADP75078.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1] gi|311216517|gb|ADP75121.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1] gi|311216573|gb|ADP75177.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1] gi|311216700|gb|ADP75304.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1] gi|311217056|gb|ADP75660.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1] gi|311217058|gb|ADP75662.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1] gi|311217343|gb|ADP75947.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1] gi|311217520|gb|ADP76124.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1] gi|311217650|gb|ADP76254.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y4.1MC1] Length = 246 Score = 44.4 bits (104), Expect = 0.015, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 24/125 (19%) Query: 67 VILVGPSGSGKSCLANIW-------SDKSRSTRFSNIAKSLDSILIDTRKPVL---LEDI 116 V+L+G G+GK+ LA + R R +++ L+ L + P L +E Sbjct: 96 VLLLGSPGTGKTHLATALGLKACEKGHEVRFFRVADLVAQLEEALKNGTLPRLKRQIETC 155 Query: 117 DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 +LL ++ LFHII ++ S+++T+ W D +RL AA Sbjct: 156 ELLILDELGYVPFQKQGSELLFHIIADCYER-KSVIVTSNLEFGQWNRVFGD--NRLTAA 212 Query: 166 TVVKI 170 V ++ Sbjct: 213 LVDRL 217 >gi|189460625|ref|ZP_03009410.1| hypothetical protein BACCOP_01266 [Bacteroides coprocola DSM 17136] gi|189432584|gb|EDV01569.1| hypothetical protein BACCOP_01266 [Bacteroides coprocola DSM 17136] Length = 342 Score = 44.4 bits (104), Expect = 0.015, Method: Composition-based stats. Identities = 38/202 (18%), Positives = 69/202 (34%), Gaps = 31/202 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G GK+ L+NI +++ LD LE D+L ++ Sbjct: 58 VLLHGPPGLGKTTLSNIIANELGVGFKVTSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHR 117 Query: 127 F------HIINSIHQYDSSLLMTARTFPVSWGVCLPDL----------CS-------RLK 163 ++ +++ Y +++ P + + L DL S R + Sbjct: 118 LSPVVEEYLYSAMEDYRIDIMI--DKGPSARSIQL-DLNPFTLVGATTRSGLLTAPLRAR 174 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR---MERSLVFAEKLVDKMD 220 + + DD L ++I++ + I D A I R R + V D Sbjct: 175 FGINLHLEYYDDAVLSRIILRSASILGIPCDVDAAGEIASRSRGTPRIANALLRRVR--D 232 Query: 221 NLALSRGMGITRSLAAEVLKET 242 + I +A L+ Sbjct: 233 FAQVKGSGRIDVEIARYALEAL 254 >gi|325963405|ref|YP_004241311.1| recombination protein MgsA [Arthrobacter phenanthrenivorans Sphe3] gi|323469492|gb|ADX73177.1| Recombination protein MgsA [Arthrobacter phenanthrenivorans Sphe3] Length = 472 Score = 44.4 bits (104), Expect = 0.015, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 71/180 (39%), Gaps = 24/180 (13%) Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDID 117 P+ P+ +IL GP G+GK+ LA++ + S I + + + + D+ Sbjct: 76 PAGPTS-LILWGPPGTGKTTLAHVIARGPGRKFVELSAITAGVKDVRRVMDEALTARDLY 134 Query: 118 LLDFNDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 T LF H N + +L+ A T S+ V P L + Sbjct: 135 KTT---TVLFLDEIHRFNKAQQDALLPGVENRWVVLVAATTENPSFSVVSPL----LSRS 187 Query: 166 TVVKISLPDDDFLEKVIVKMFAD-RQIFIDKKLAAYIVQRMER-SLVFAEKLVDKMDNLA 223 ++ + D +E +I + AD R + L+A ++ + R S A + + ++ A Sbjct: 188 LLLTLRPLTDADIEGLIQRAVADPRGLSGKVDLSAEALEHLVRLSGGDARRALTALEAAA 247 >gi|188589876|ref|YP_001920352.1| Holliday junction DNA helicase RuvB [Clostridium botulinum E3 str. Alaska E43] gi|238689662|sp|B2V338|RUVB_CLOBA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|188500157|gb|ACD53293.1| Holliday junction DNA helicase RuvB [Clostridium botulinum E3 str. Alaska E43] Length = 344 Score = 44.4 bits (104), Expect = 0.015, Method: Composition-based stats. Identities = 39/201 (19%), Positives = 78/201 (38%), Gaps = 27/201 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G GK+ LANI + + +++ L+D D+L ++ Sbjct: 55 VLLYGPPGLGKTTLANIIAKEMTGDLKITSGPAIERAGDLAAILTTLKDYDVLFIDEI-- 112 Query: 127 FHIINSIHQ-------YDSSL--LMTARTFPVSWGVCLPD------------LCS--RLK 163 H +N + D +L ++ S + LP L S R + Sbjct: 113 -HRLNRSVEEILYPAMEDYALDIVIGKGAAAKSIRLDLPKFTLIGATTRIGMLTSPLRDR 171 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNL 222 + + D++ L++++++ A I ++ A I R + A +L+ ++ D Sbjct: 172 FGVLCAMEYYDENQLKEIVIRSAAVFGCKITEEGALEIASRSRGTPRIANRLLKRVRDYS 231 Query: 223 ALSRGMGITRSLAAEVLKETQ 243 + I+ A E L+ + Sbjct: 232 EVKSNTVISLKEAREALELLE 252 >gi|154345666|ref|XP_001568770.1| Transitional endoplasmic reticulum ATPase [Leishmania braziliensis MHOM/BR/75/M2904] gi|134066112|emb|CAM43901.1| putative transitional endoplasmic reticulum ATPase [Leishmania braziliensis MHOM/BR/75/M2904] Length = 785 Score = 44.4 bits (104), Expect = 0.015, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 34/74 (45%), Gaps = 16/74 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP GSGK+ +A ++++ + F SN+ K+ + + Sbjct: 227 PPRGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAERN 286 Query: 107 TRKPVLLEDIDLLD 120 + +++ID + Sbjct: 287 APAIIFIDEIDSIA 300 Score = 37.8 bits (87), Expect = 1.5, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 24/57 (42%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P + V+ GP G GK+ LA + + ++ S L ++ + + + D Sbjct: 500 PPKGVLFYGPPGCGKTLLAKAIATECQANFISIKGPELLTMWFGESEANVRDVFDKA 556 >gi|21492917|ref|NP_659992.1| transposase [Rhizobium etli CFN 42] gi|21467342|gb|AAM55005.1| probable insertion sequence transposase protein [Rhizobium etli CFN 42] gi|327192825|gb|EGE59751.1| transposase [Rhizobium etli CNPAF512] Length = 297 Score = 44.4 bits (104), Expect = 0.015, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 54/134 (40%), Gaps = 23/134 (17%) Query: 45 VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI---------WS-------DKS 88 + A A+ DSW + + +++ GP G GKS LA W D Sbjct: 88 ISKAQVMAITAGDSWLAKGANILM-FGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLV 146 Query: 89 RSTRFSNIAKSLDSIL--IDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMT 143 + + + L+S + ++ ++L+D+ + + + LF +I S S+L+T Sbjct: 147 QKLQVARRELQLESAIDKLNRYDLLILDDLAYVTKDQAETSVLFELI-SARYEHRSILIT 205 Query: 144 ARTFPVSWGVCLPD 157 A W PD Sbjct: 206 ANQPFGEWNRVFPD 219 >gi|121726259|ref|ZP_01679549.1| conserved hypothetical protein [Vibrio cholerae V52] gi|229515491|ref|ZP_04404950.1| ATPase AAA family [Vibrio cholerae TMA 21] gi|229529802|ref|ZP_04419192.1| ATPase AAA family [Vibrio cholerae 12129(1)] gi|121631205|gb|EAX63578.1| conserved hypothetical protein [Vibrio cholerae V52] gi|229333576|gb|EEN99062.1| ATPase AAA family [Vibrio cholerae 12129(1)] gi|229347260|gb|EEO12220.1| ATPase AAA family [Vibrio cholerae TMA 21] gi|327483813|gb|AEA78220.1| ATPase, AAA family [Vibrio cholerae LMA3894-4] Length = 449 Score = 44.4 bits (104), Expect = 0.015, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 65/199 (32%), Gaps = 38/199 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G+GK+ LA + ++ + + A + I E+ L T L Sbjct: 54 MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAREN--KLSGRRTIL 111 Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172 F H N Q D ++ T L SR A V K++ Sbjct: 112 FVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKLTS 165 Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIV------QRMERSLVFAEKLVDKM 219 + + + + + AD R + + + RM + + + + Sbjct: 166 LNQQEILQALHQAIADTERGLGKVAAVFADNVLDRLAELVNGDARMSLNYLELLYDMARE 225 Query: 220 DNLALSRGMGITRSLAAEV 238 D+ I L AEV Sbjct: 226 DD---QGRKQIDLPLLAEV 241 >gi|328463405|gb|EGF35073.1| AAA family ATPase [Lactobacillus rhamnosus MTCC 5462] Length = 305 Score = 44.4 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 29/167 (17%), Positives = 60/167 (35%), Gaps = 23/167 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117 +IL GP G+GK+ +A+ + ++ + R N A + + +LL++I Sbjct: 68 MILYGPPGTGKTSIASAIAGSTKYAFRILNAATDTKKDLQIVAEEAKMSGTVILLLDEIH 127 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 LD + + +L+ A T + P + SR + ++ Sbjct: 128 RLDKTKQDFLLP---LLESGRIVLIGATTENPYMNIQ-PAIRSR---TQIFQVKPLTPTD 180 Query: 178 LEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 + I + AD Q+ + + Y+ L A ++ Sbjct: 181 ISTAIDRALADDKRGLGKYQVDLTPEARDYLTHTTNGDLRAALNGLE 227 >gi|303229442|ref|ZP_07316232.1| recombination factor protein RarA [Veillonella atypica ACS-134-V-Col7a] gi|303230800|ref|ZP_07317547.1| recombination factor protein RarA [Veillonella atypica ACS-049-V-Sch6] gi|302514560|gb|EFL56555.1| recombination factor protein RarA [Veillonella atypica ACS-049-V-Sch6] gi|302515978|gb|EFL57930.1| recombination factor protein RarA [Veillonella atypica ACS-134-V-Col7a] Length = 434 Score = 44.4 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 61/157 (38%), Gaps = 30/157 (19%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 ++ GP G+GK+ LA I + S S + + ++ + + R ++ED + Sbjct: 51 PSMLFYGPCGTGKTTLAGIIAKMSNSHFVN--LNATNAGIGELRN--IIEDARKRVRSLQ 106 Query: 125 Q---LF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 Q LF H N + + +L+ A T + V P L SRL+ ++ Sbjct: 107 QRTILFLDEIHRFNKSQQDVLLPCVEDGTIILIGATTENPFFEVNRP-LLSRLR---LIT 162 Query: 170 ISLPDDDFLEKVIVKMFAD-------RQIFIDKKLAA 199 + + +++ + D R + + +L Sbjct: 163 LEALTPKAISQILKRALTDSEVGLGARNLQVKDELLE 199 >gi|254225502|ref|ZP_04919112.1| conserved hypothetical protein [Vibrio cholerae V51] gi|125621972|gb|EAZ50296.1| conserved hypothetical protein [Vibrio cholerae V51] Length = 449 Score = 44.4 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 65/199 (32%), Gaps = 38/199 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G+GK+ LA + ++ + + A + I E+ L T L Sbjct: 54 MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAREN--KLSGRRTIL 111 Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172 F H N Q D ++ T L SR A V K++ Sbjct: 112 FVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKLTS 165 Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIV------QRMERSLVFAEKLVDKM 219 + + + + + AD R + + + RM + + + + Sbjct: 166 LNQQEILQALHQAIADTERGLGKVAAVFADNVLDRLAELVNGDARMSLNYLELLYDMARE 225 Query: 220 DNLALSRGMGITRSLAAEV 238 D+ I L AEV Sbjct: 226 DD---QGRKQIDLPLLAEV 241 >gi|160934233|ref|ZP_02081620.1| hypothetical protein CLOLEP_03104 [Clostridium leptum DSM 753] gi|156866906|gb|EDO60278.1| hypothetical protein CLOLEP_03104 [Clostridium leptum DSM 753] Length = 319 Score = 44.4 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 9/77 (11%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL-------EDID 117 +V++L GPSGSGK+ A I + S + SLD + K +L EDI Sbjct: 56 KVIMLSGPSGSGKTTTARILQKLLKEKGVSAVQISLDDFFMGEGKAPILDSGEYDYEDIR 115 Query: 118 LLDFNDTQ--LFHIINS 132 L+ + L + N Sbjct: 116 ALNLEQVENCLLDLSNR 132 >gi|11493971|gb|AAG35725.1|AF208046_1 RuvB-like RUVBL1 [Mus musculus] Length = 445 Score = 44.4 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 16/83 (19%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA+I ++ S+ + S + + + D+ N+ Sbjct: 42 PSLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 96 Query: 125 QLF-----------HIINSIHQY 136 F H N Q Sbjct: 97 SFFKRKTILFIDEIHRFNKSQQD 119 >gi|83593992|ref|YP_427744.1| recombination factor protein RarA [Rhodospirillum rubrum ATCC 11170] gi|83576906|gb|ABC23457.1| Recombination protein MgsA [Rhodospirillum rubrum ATCC 11170] Length = 439 Score = 44.4 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 51/147 (34%), Gaps = 26/147 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 V+L GP G GK+ +A + +D + L I R+ + LL Sbjct: 51 VVLWGPPGCGKTTIARLLADSTDLHFEPLSAVFAGVADLRKIFTAARERRTVGRGTLLFI 110 Query: 122 NDTQLFHIINSIHQYD-------SSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKIS 171 ++ H N Q ++++ T L SR V+ + Sbjct: 111 DEI---HRFNRAQQDGFLPYVEDGTVVLVGATTENPSFELNAA---LLSR---CQVLVLR 161 Query: 172 LPDDDFLEKVIVKMFAD--RQIFIDKK 196 DD LE +I + A+ R + + + Sbjct: 162 RLDDAALETLIARAEAECGRSLPLSAE 188 >gi|37679508|ref|NP_934117.1| recombination factor protein RarA [Vibrio vulnificus YJ016] gi|37198252|dbj|BAC94088.1| putative ATPase protein [Vibrio vulnificus YJ016] Length = 449 Score = 44.4 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 42/197 (21%), Positives = 70/197 (35%), Gaps = 34/197 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G+GK+ LA + ++ + + A + I E+ + T L Sbjct: 54 MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAREN--KMAGRRTIL 111 Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172 F H N Q D ++ T L SR A V K++ Sbjct: 112 FVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKLTS 165 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER-----------SLVFAEKLVDKMDN 221 + + + + + D+Q + A + ++R SL + E L D ++ Sbjct: 166 LNKEEISLALNQAINDKQRGLGNTPAHFADNVLDRLAELVNGDARMSLNYLELLYDMAED 225 Query: 222 LALSRGMGITRSLAAEV 238 A IT L AEV Sbjct: 226 NA-QGEKAITLKLLAEV 241 >gi|325959789|ref|YP_004291255.1| AAA family ATPase [Methanobacterium sp. AL-21] gi|325331221|gb|ADZ10283.1| AAA family ATPase, CDC48 subfamily [Methanobacterium sp. AL-21] Length = 729 Score = 44.4 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 26/166 (15%), Positives = 59/166 (35%), Gaps = 39/166 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF--------------SNIAKSLDSILIDTR 108 P + V++ GP G+GK+ LA +++S + S + Sbjct: 236 PPKGVLMHGPPGTGKTLLAKAVANESDAHFIAINGPEIMSKYVGGSEERLRELFEEAEEN 295 Query: 109 KP--VLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 P + +++ID + QL +++ + +++ A P + Sbjct: 296 APSIIFIDEIDAIAPKREEVSGEVERRTVAQLLTLMDGLKSRGQVVVIGATNRPDALDAA 355 Query: 155 LPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 + + ++I +PD D +V+ R + +D K+ Sbjct: 356 IR------RGGRFDREIEIGVPDKDGRGEVLQ--IHTRGMPLDDKV 393 Score = 39.7 bits (92), Expect = 0.40, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 21/38 (55%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P R V++ GP G+GK+ LA +++S + + L Sbjct: 508 PPRGVLIYGPPGTGKTLLAKAVANESDANFIAVKGPEL 545 >gi|257464659|ref|ZP_05629030.1| AAA family ATPase, CDC48 subfamily protein [Actinobacillus minor 202] gi|257450319|gb|EEV24362.1| AAA family ATPase, CDC48 subfamily protein [Actinobacillus minor 202] Length = 545 Score = 44.4 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 18/117 (15%), Positives = 42/117 (35%), Gaps = 28/117 (23%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILIDTRKP 110 ++L GP GSGK+ +A + ++ + S + + D Sbjct: 59 ILLYGPPGSGKTLIARAVAAETDAHFISVNSAEIIRQHYGESEQRLREIFDEAKDYPYSI 118 Query: 111 VLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 + ++ID L N +L +++ + + ++++A P + L Sbjct: 119 LFFDEIDALAPNREEVAGDAEKRLVSELLALMDGVKSRGNIVIISATNLPNNLDPAL 175 >gi|224002178|ref|XP_002290761.1| transitional endoplasmic reticulum [Thalassiosira pseudonana CCMP1335] gi|220974183|gb|EED92513.1| transitional endoplasmic reticulum [Thalassiosira pseudonana CCMP1335] Length = 818 Score = 44.4 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 65/171 (38%), Gaps = 42/171 (24%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + V+L GP GSGK+ +A ++++ + + N+ K+ + + Sbjct: 246 PPQGVLLYGPPGSGKTLIARAIANETGAFFYLINGPEIMSKGSGESEGNLRKAFEEAAKN 305 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSS-------LLMTARTF 147 V +++ID + QL +++ +H + L++ A Sbjct: 306 APAIVFIDEIDCIAPKRDKINGEVERRVVSQLLTLMDGMHSGPTRSSSLKPVLVIAATNR 365 Query: 148 PVSWGVCLPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P + + L R + + + +PD+ +++ R + +D + Sbjct: 366 PNAIDLSLR----RFGRFDREIDLGVPDEIGRLEIL--HIHTRSMKLDDSV 410 >gi|270010589|gb|EFA07037.1| hypothetical protein TcasGA2_TC010011 [Tribolium castaneum] Length = 625 Score = 44.4 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 32/150 (21%), Positives = 56/150 (37%), Gaps = 55/150 (36%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P+R ++L GP G+GK+ LA + + R+T FS A SL S + + ++ Sbjct: 382 PARGLLLFGPPGNGKTLLARAVATECRATFFSISAASLTSKYVGEGEKMVRALFAIAREL 441 Query: 113 ------LEDIDLLDFNDTQLFHIINSIHQYDSSL---------------------LMTAR 145 ++++D L ++ N+ H+ L +M A Sbjct: 442 QPSIIFIDEVDSL-LSERS-----NNEHEASRRLKTEFLVEFDGLPSNPDSERVVVMAAT 495 Query: 146 TFPVSWG------------VCLPDLCSRLK 163 P V LPDL +R++ Sbjct: 496 NRPQELDEAALRRFPKRVYVTLPDLETRIR 525 >gi|115958544|ref|XP_001190690.1| PREDICTED: hypothetical protein, partial [Strongylocentrotus purpuratus] Length = 339 Score = 44.4 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 28/201 (13%), Positives = 70/201 (34%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V+L GP G+GK+ LA + +++ST L + I ++ Sbjct: 119 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 178 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151 ++++D + + + ++N + + ++ A Sbjct: 179 LPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSSEEIKVIAATNRVDIL 238 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ P+++ +++ R++ + + + R Sbjct: 239 DPAL--LRSGRLD--RKIEFPAPNEEARARIMQ--IHSRKMNVGADVNFEELARCTDDFN 292 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ ++ G T Sbjct: 293 GAQCKAVCVEAGMIALRRGAT 313 >gi|45185047|ref|NP_982764.1| ABL183Wp [Ashbya gossypii ATCC 10895] gi|44980683|gb|AAS50588.1| ABL183Wp [Ashbya gossypii ATCC 10895] Length = 547 Score = 44.4 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 63/184 (34%), Gaps = 29/184 (15%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP----VLLEDID--- 117 +IL GP G GK+ LA + S + + I L + ++ Sbjct: 143 PSMILWGPPGVGKTSLARLLSKTVNARPQAKITYQLVETSATKANAQELRTVFDNAKKEF 202 Query: 118 LLDFNDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 L T LF H N + +L+ A T S+ + L SR Sbjct: 203 RLTKRMTVLFVDEIHRFNKGQQDLLLPYVESGGIVLIGATTENPSFQLNNA-LLSR---C 258 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 V ++ +D + +V+ R I + K + + R L + ++ ++ +A+ Sbjct: 259 QVFVLNKLTEDEMNRVLT-----RGIAMLNKCRRLLWEN-PRPLKLEMECIEYINRVAVG 312 Query: 226 RGMG 229 Sbjct: 313 DTRK 316 >gi|260220658|emb|CBA28419.1| Replication-associated recombination protein A [Curvibacter putative symbiont of Hydra magnipapillata] Length = 431 Score = 44.4 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 42/194 (21%), Positives = 74/194 (38%), Gaps = 24/194 (12%) Query: 68 ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLF 127 IL GP G GK+ +A + +D + + A I L D L+ T +F Sbjct: 49 ILWGPPGVGKTTIARLMADAFDAQFITISAVLGGIKEIREAVDQALNARDGLEQRRTIIF 108 Query: 128 ----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 H N + + A T S+ V L SR A V + D Sbjct: 109 VDEVHRFNKSQQDAFLPHVESGLFTFIGATTENPSFEVNSA-LLSR---AAVYVLQPLDA 164 Query: 176 DFLEKVIVKMFADRQI-FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM----GI 230 D L+K+++K + + I+ ++ + A +L++ ++ LA++ I Sbjct: 165 DSLKKIVLKAQTEYALPAIESIAIDRLIAYAD---GDARRLLNTLETLAIAARQEQAPEI 221 Query: 231 TRSLAAEVLKETQQ 244 T + +VL E + Sbjct: 222 TDAWLLKVLGERMR 235 >gi|254738944|ref|ZP_05196646.1| hypothetical protein BantWNA_27620 [Bacillus anthracis str. Western North America USA6153] Length = 267 Score = 44.4 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 48/125 (38%), Gaps = 24/125 (19%) Query: 52 AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------- 104 AV+ + ++ W ++L G G+GK+ A + + + + + +L Sbjct: 103 AVKYVKTFKXWNGESLMLWGEPGNGKTHXAAAIVNXLSKKGYXVVFQXVPELLQRIRXTX 162 Query: 105 --------------IDTRKPVLLEDIDL---LDFNDTQLFHIINSIHQYDSSLLMTARTF 147 + ++L+DI ++ + +LF+II+ ++ + L T+ Sbjct: 163 XXENKENETQIMRALLECDLLILDDIGAEKTTEWVEEKLFNIIDGRYRKELPTLYTSNLE 222 Query: 148 PVSWG 152 P Sbjct: 223 PKELK 227 >gi|261418417|ref|YP_003252099.1| recombination factor protein RarA [Geobacillus sp. Y412MC61] gi|319767623|ref|YP_004133124.1| ATPase AAA [Geobacillus sp. Y412MC52] gi|261374874|gb|ACX77617.1| AAA ATPase central domain protein [Geobacillus sp. Y412MC61] gi|317112489|gb|ADU94981.1| AAA ATPase central domain protein [Geobacillus sp. Y412MC52] Length = 431 Score = 44.4 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 54/148 (36%), Gaps = 21/148 (14%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFS---------NIAKSLDSILIDTRKPVLLED 115 ++L G G+GK+ LA + + + I +++++ + +++ Sbjct: 43 PSLLLYGEPGTGKTSLAYAIARTAGREWVAINATTAGKKEIEEAVEAARWSGNVLLFIDE 102 Query: 116 IDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 I L+ + H+ + L+ A T V P + SR +K P Sbjct: 103 IHRLNKAQQDVLLPHL-----ESGLVTLIGATTENPFHEVN-PAIRSRCGQIQQLKPLKP 156 Query: 174 DDDFLEKVIVKMFAD--RQIFIDKKLAA 199 DD L ++ + AD R + + Sbjct: 157 DD--LLIILKRALADPERGVGEPPVVID 182 >gi|269859412|ref|XP_002649431.1| ATPase of the AAA+ class [Enterocytozoon bieneusi H348] gi|220067194|gb|EED44661.1| ATPase of the AAA+ class [Enterocytozoon bieneusi H348] Length = 778 Score = 44.4 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 37/221 (16%), Positives = 84/221 (38%), Gaps = 51/221 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A +++ + SN+ K+ + Sbjct: 245 PPRGILLHGPPGTGKTQIARAIANEIGAYLLIINGPEIMSKMSGESESNLRKAFEEANKK 304 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + N QL +++ +++ + +++ A P + Sbjct: 305 QPSIIFMDEIDSIAPNREKSTQETEKRIVSQLLTLMDGMNERSNVIVLGATNRPNAID-- 362 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER------ 207 P L R + ++I +PD+ +V+ + + + + Y V + Sbjct: 363 -PALR-RFGRFDREIEIGVPDEIGRFEVL--SIHTKNMRLADDVDLYAVAKETHGFTGSD 418 Query: 208 -----SLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 S ++L +K+ + L R + EVLK+ Sbjct: 419 IASMCSEAAIQQLREKLPYIDLDRER---IPI--EVLKDLS 454 Score = 43.2 bits (101), Expect = 0.035, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 48/145 (33%), Gaps = 44/145 (30%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 PS+ V+L GP G GK+ LA + + ++ S L S + + + E D + Sbjct: 518 PSKGVLLYGPPGCGKTLLAKAVATECKANFISIKGPELLSKWVGDSESNVRELFDKARGS 577 Query: 123 DT-QLF------------HIINS-----------------IHQYDSSLLMTARTFPVSWG 152 LF H N ++Q + +M A P Sbjct: 578 APCVLFFDEIDSVGKSRMHASNDGGTTDRMLNQILTEMDGMNQKKNVFVMGATNRPGLLD 637 Query: 153 --------------VCLPDLCSRLK 163 + LPDL SR+K Sbjct: 638 SALMRPGRLDQLVYIPLPDLKSRIK 662 >gi|153213560|ref|ZP_01948850.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|153824929|ref|ZP_01977596.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|153828124|ref|ZP_01980791.1| ATPase, AAA family [Vibrio cholerae 623-39] gi|229520459|ref|ZP_04409884.1| ATPase AAA family [Vibrio cholerae TM 11079-80] gi|261210730|ref|ZP_05925022.1| ATPase AAA family [Vibrio sp. RC341] gi|124115896|gb|EAY34716.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|148876366|gb|EDL74501.1| ATPase, AAA family [Vibrio cholerae 623-39] gi|149741441|gb|EDM55471.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|229342557|gb|EEO07550.1| ATPase AAA family [Vibrio cholerae TM 11079-80] gi|260840215|gb|EEX66795.1| ATPase AAA family [Vibrio sp. RC341] Length = 449 Score = 44.4 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 65/199 (32%), Gaps = 38/199 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G+GK+ LA + ++ + + A + I E+ L T L Sbjct: 54 MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAREN--KLSGRRTIL 111 Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172 F H N Q D ++ T L SR A V K++ Sbjct: 112 FVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKLTS 165 Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIV------QRMERSLVFAEKLVDKM 219 + + + + + AD R + + + RM + + + + Sbjct: 166 LNQQEILQALHQAIADTERGLGKVAAVFADNVLDRLAELVNGDARMSLNYLELLYDMARE 225 Query: 220 DNLALSRGMGITRSLAAEV 238 D+ I L AEV Sbjct: 226 DD---QGRKQIDLPLLAEV 241 >gi|310789403|gb|EFQ24936.1| AAA family ATPase [Glomerella graminicola M1.001] Length = 819 Score = 44.4 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 63/164 (38%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R V+L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 256 PPRGVLLYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 315 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + + ++M A P S Sbjct: 316 SPAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNIVVMAATNRPNSIDPA 375 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L R + V I +PD +V+ + + + + Sbjct: 376 LR----RFGRFDREVDIGIPDPTGRLEVLQ--IHTKNMKLGDDV 413 >gi|294954392|ref|XP_002788145.1| werner helicase interacting protein, putative [Perkinsus marinus ATCC 50983] gi|239903360|gb|EER19941.1| werner helicase interacting protein, putative [Perkinsus marinus ATCC 50983] Length = 622 Score = 44.4 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 38/194 (19%), Positives = 72/194 (37%), Gaps = 29/194 (14%) Query: 47 SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS-------RSTRFSNIAKS 99 A+ Q+ I P+ PS +I GP G GK+ LA + R T+ S + Sbjct: 154 EALSQSAATISHHPTVPS--MIFWGPPGCGKTTLAQLLCRSLTQSGLPWRHTKLSAVNAG 211 Query: 100 LDSILIDTRKPVLLEDIDLLDFNDTQLF----HIINSIH--------QYDSSLLMTARTF 147 ++ + ++ K +E + + T LF H N + + L+ A T Sbjct: 212 VNDVGLEIPKAESMEG--KVTISGTLLFLDEIHRFNKAQQDALLPHVESGTLTLIGATTE 269 Query: 148 PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR--QIFIDKKLAAYIVQRM 205 S+ L SR V+K S D + +++ + Q+ +D+ + Sbjct: 270 NPSFQCNRA-LVSR---CQVIKFSSLTSDSIGRILRRALTSYYPQVAVDESTGDLLRILA 325 Query: 206 ERSLVFAEKLVDKM 219 E + ++ + Sbjct: 326 EFGMGDVRASLNAL 339 >gi|159469321|ref|XP_001692816.1| 26S proteasome regulatory subunit [Chlamydomonas reinhardtii] gi|158278069|gb|EDP03835.1| 26S proteasome regulatory subunit [Chlamydomonas reinhardtii] Length = 427 Score = 44.4 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 50/154 (32%), Gaps = 48/154 (31%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA ++++ + I L + ++ Sbjct: 202 PPKGVLMYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSK 261 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQYDSS----LLMTARTF--- 147 +++D + + I+N + +D+ +LM Sbjct: 262 KACIVFFDEVDAIGGARFDDGAGGDNEVQRTMLEIVNQLDGFDARGNVKVLMATNRPDTL 321 Query: 148 -PVSW---------GVCLPDLCSRLKAATVVKIS 171 P LPDL SR + +I Sbjct: 322 DPALLRPGRLDRKVEFGLPDLASR---TQIFQIH 352 >gi|289178455|gb|ADC85701.1| ATPase, AAA family [Bifidobacterium animalis subsp. lactis BB-12] Length = 520 Score = 44.4 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 58/143 (40%), Gaps = 28/143 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 VIL GP G GK+ LA+I + +S ++ K L +L + ++ Sbjct: 78 VILFGPPGVGKTTLAHIVAKQSGRQYEELSAVTSGVKDLREVLRRAHERLV------SQG 131 Query: 122 NDTQLF--HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVK 169 +T LF + +LL + A T S+ V P L SR + VVK Sbjct: 132 KETVLFIDEVHRFSKSQQDALLPSVENRDVTFIAATTENPSFSVIKP-LLSR---SVVVK 187 Query: 170 ISLPDDDFLEKVIVKMFAD-RQI 191 + + + L VI + ++ R + Sbjct: 188 LESLEPEELRTVIERAVSNPRGL 210 >gi|237751577|ref|ZP_04582057.1| recombination factor protein RarA [Helicobacter bilis ATCC 43879] gi|229372943|gb|EEO23334.1| recombination factor protein RarA [Helicobacter bilis ATCC 43879] Length = 402 Score = 44.4 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 63/197 (31%), Gaps = 32/197 (16%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 ++ GP GSGK+ LA+I + S+ T S A + + + N Sbjct: 44 PNLLFFGPPGSGKTSLAHIIATLSKKTFLSFNATNFKLDSLKKELSLY-----EHTMNKP 98 Query: 125 QLF----HIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDLCSR-----LKAATVV 168 LF H +N Q + + + P L SR LKA Sbjct: 99 LLFIDEVHRLNIAQQEFLLPILEKGQVAFIGASTENPFFTLSPALRSRSFLFELKALQTQ 158 Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD-KMDNLALSRG 227 + L+ K D + ++++ L+D +D + Sbjct: 159 DFEELYNRVLKAYPPKHSFD-------SIKSWLLSHHNGDCRAFLNLLDIALD---IDSK 208 Query: 228 MGITRSLAAEVLKETQQ 244 ++ S+ +++ Q Sbjct: 209 QEVSVSMLQSLVQNAQG 225 >gi|291278894|ref|YP_003495729.1| ATPase AAA family [Deferribacter desulfuricans SSM1] gi|290753596|dbj|BAI79973.1| ATPase, AAA family [Deferribacter desulfuricans SSM1] Length = 404 Score = 44.4 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 64/173 (36%), Gaps = 27/173 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSIL--------IDTRKPVLLEDI 116 +IL+GP G GK+ +A + + R S I + +++I Sbjct: 40 IILIGPPGCGKTTIAKLIGKQHSMIFYRLHAANCSSSDIRKIVEETKGYGKTSIIFIDEI 99 Query: 117 DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD-- 174 + + L ++N I + L+ + P + + P L SR + + +++ P Sbjct: 100 HHFNKSQQNL--LLNIIDEGYVKLVGASTENP-YYSLIPP-LRSR---SILFELNQPRRS 152 Query: 175 --DDFLEKV---IVKMFADRQIFIDKKLAAYIVQRME---RSLVFAEKLVDKM 219 + ++V + + F I D + ++Q R + + K+ Sbjct: 153 DFEKLFKRVENWLKEEFEVSDIVYDDNVVDLLIQNANGDVRKFYIMMESLAKI 205 >gi|261415785|ref|YP_003249468.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372241|gb|ACX74986.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327080|gb|ADL26281.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Fibrobacter succinogenes subsp. succinogenes S85] Length = 417 Score = 44.4 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 46/127 (36%), Gaps = 30/127 (23%) Query: 17 KNDQPKNKEEQ-------LFFSFPRCLGISRDDLLVHS-----AIEQAV-RLIDSWP--- 60 + D + K+EQ P + DD ++ A+ AV Sbjct: 47 EEDLARTKQEQEAKEISSKPLPLPTEIKAHLDDFVIGQDRAKMALSVAVYNHYKRLRYKQ 106 Query: 61 --------SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 ++LVGP+GSGK+ LA + RF ++ ++ + T + Sbjct: 107 THKSKDDVDVEKSNLLLVGPTGSGKTLLAQTMA------RFLDVPFTIADATVLTEAGYV 160 Query: 113 LEDIDLL 119 ED+D + Sbjct: 161 GEDVDSI 167 >gi|183601785|ref|ZP_02963155.1| recombination factor protein RarA [Bifidobacterium animalis subsp. lactis HN019] gi|219683685|ref|YP_002470068.1| recombination factor protein RarA [Bifidobacterium animalis subsp. lactis AD011] gi|241190717|ref|YP_002968111.1| recombination factor protein RarA [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196123|ref|YP_002969678.1| recombination factor protein RarA [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219391|gb|EDT90032.1| recombination factor protein RarA [Bifidobacterium animalis subsp. lactis HN019] gi|219621335|gb|ACL29492.1| AAA ATPase, central domain protein [Bifidobacterium animalis subsp. lactis AD011] gi|240249109|gb|ACS46049.1| recombination factor protein RarA [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250677|gb|ACS47616.1| recombination factor protein RarA [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793706|gb|ADG33241.1| recombination factor protein RarA [Bifidobacterium animalis subsp. lactis V9] Length = 504 Score = 44.4 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 58/143 (40%), Gaps = 28/143 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 VIL GP G GK+ LA+I + +S ++ K L +L + ++ Sbjct: 62 VILFGPPGVGKTTLAHIVAKQSGRQYEELSAVTSGVKDLREVLRRAHERLV------SQG 115 Query: 122 NDTQLF--HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVK 169 +T LF + +LL + A T S+ V P L SR + VVK Sbjct: 116 KETVLFIDEVHRFSKSQQDALLPSVENRDVTFIAATTENPSFSVIKP-LLSR---SVVVK 171 Query: 170 ISLPDDDFLEKVIVKMFAD-RQI 191 + + + L VI + ++ R + Sbjct: 172 LESLEPEELRTVIERAVSNPRGL 194 >gi|134055619|emb|CAK37265.1| unnamed protein product [Aspergillus niger] Length = 767 Score = 44.4 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 17/75 (22%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST--------RFSNIAKSLDSILIDTRKPV-----LL 113 V+L GP G+GK+ LA +++ ++T S+IA + + + Sbjct: 517 VLLHGPPGTGKTHLARAIANEFKATMLWVKPADIVSDIAGDAEKAIHAAFTLAKKLSPCI 576 Query: 114 EDIDLLDFNDTQLFH 128 ID +D LFH Sbjct: 577 LFIDEVD----ALFH 587 >gi|332796490|ref|YP_004457990.1| 26S proteasome subunit P45 family [Acidianus hospitalis W1] gi|332694225|gb|AEE93692.1| 26S proteasome subunit P45 family [Acidianus hospitalis W1] Length = 390 Score = 44.0 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 27/57 (47%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P + V+L GP G+GK+ LA + +S +T +A + V+ E +L Sbjct: 166 PPKGVLLYGPPGTGKTMLAKAVATESNATFIHVVASEFAQKFVGEGARVVREVFELA 222 >gi|325179638|emb|CCA14036.1| 26S protease regulatory subunit 6AA putative [Albugo laibachii Nc14] Length = 436 Score = 44.0 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + ++ + A L + I ++ + Sbjct: 209 PPKGVLLHGPPGTGKTLLARACAKQTDAVFLKIAAPLLVQMFIGDGAKLVRD 260 >gi|317013863|gb|ADU81299.1| recombination factor protein RarA [Helicobacter pylori Gambia94/24] Length = 391 Score = 44.0 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 66/179 (36%), Gaps = 21/179 (11%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILI--------DTRKPVLLE 114 GP G GK+ LA I + F+ L+ + + + V ++ Sbjct: 38 PHAFFYGPPGVGKTSLAQIIARSLECPILLFNATDFKLEDLRLKLKNYQNTLLKPVVFID 97 Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 + L+ + I + + +L++ A T ++ + + SR + + +++ Sbjct: 98 ETHRLNKTQQEFLLPI---MEKNHALILGASTQDPNYSLSHA-IRSR---SFIFELTPLK 150 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233 L+++ K Q I+ Y++ S A L++ +D L+ IT Sbjct: 151 KSDLDRLCDKALTLLQKQIEPGAKTYLLNN---SAGDARALLNLLD-LSAKIENPITLK 205 >gi|327295304|ref|XP_003232347.1| AAA family ATPase [Trichophyton rubrum CBS 118892] gi|326465519|gb|EGD90972.1| AAA family ATPase [Trichophyton rubrum CBS 118892] Length = 550 Score = 44.0 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 34/214 (15%), Positives = 74/214 (34%), Gaps = 37/214 (17%) Query: 49 IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN------------- 95 LI+ +IL G +G+GK+ LA + + S Sbjct: 162 NGVLRGLIERDR---VPSMILWGSAGTGKTTLARVIASMVGSRFVEINSTSSGVAECKKL 218 Query: 96 IAKSLDSILIDTRKPVLL-EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 A++ + + + RK ++ ++I + +F + L+ A T S+ V Sbjct: 219 FAEAKNELSLTGRKTIIFCDEIHRFSKSQQDVFL---GPVESGQVTLIGATTENPSFKVQ 275 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ------IFIDKKLAAYIVQRMERS 208 L SR ++ ++ + ++ + +D +L Y+ + Sbjct: 276 NA-LLSR---CRTFTLAKLTEENICAILNRALRVEGPNYSPSALVDDELIRYLAAFADGD 331 Query: 209 LVFAEKLVD-KMD---NLALSR---GMGITRSLA 235 A L++ MD +++ +TR+L Sbjct: 332 ARTALNLLELAMDLSQRENMTKDELKKSLTRTLV 365 >gi|78183967|ref|YP_376402.1| recombination factor protein RarA/unknown domain fusion protein [Synechococcus sp. CC9902] gi|78168261|gb|ABB25358.1| Recombination protein MgsA [Synechococcus sp. CC9902] Length = 733 Score = 44.0 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 61/170 (35%), Gaps = 24/170 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA I ++ +R+ + A + + ++ T L Sbjct: 58 LILHGPPGVGKTTLARIVANHTRAHFSNLNAVLAGVKDLRAEVDAAQQRLERHGLR-TIL 116 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H NS + + L+ A T + V L SR + + ++ + Sbjct: 117 FIDEVHRFNSAQQDALLPWVENGTVTLIGATTENPFFEVNKA-LVSR---SRLFRLLPLE 172 Query: 175 DDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 L +++ + D R + +D A ++V ++ Sbjct: 173 PKDLHQLLQRALTDQDRGYGERSVVLDTDAANHLVDVAGGDARSLLNALE 222 >gi|302753326|ref|XP_002960087.1| hypothetical protein SELMODRAFT_74992 [Selaginella moellendorffii] gi|302804594|ref|XP_002984049.1| hypothetical protein SELMODRAFT_180681 [Selaginella moellendorffii] gi|300148401|gb|EFJ15061.1| hypothetical protein SELMODRAFT_180681 [Selaginella moellendorffii] gi|300171026|gb|EFJ37626.1| hypothetical protein SELMODRAFT_74992 [Selaginella moellendorffii] Length = 420 Score = 44.0 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ +A + ++ +T L + I ++ + Sbjct: 200 PPKGVLLYGPPGTGKTLMARACAAQTNATYLKLAGPQLVQMFIGDGAKLVRD 251 >gi|225352769|ref|ZP_03743792.1| hypothetical protein BIFPSEUDO_04399 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225156376|gb|EEG69945.1| hypothetical protein BIFPSEUDO_04399 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 458 Score = 44.0 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 40/177 (22%), Positives = 72/177 (40%), Gaps = 31/177 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 +IL GP G GK+ LA I + +S ++ K + +L ++ E + + F Sbjct: 62 IILFGPPGVGKTTLAYIVAKQSGRVFEELSAVTSGVKDVRDVLRRAHDRLVAEGKETVLF 121 Query: 122 NDTQLFHIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 D + +LL + A T S+ + P L SR + VVK+ Sbjct: 122 IDE----VHRFSKSQQDALLPSVENRDVTFIAATTENPSFSIIKP-LLSR---SVVVKLE 173 Query: 172 LPDDDFLEKVIVKMF-ADRQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + D L+ +I + ++R + I+ + IV RM + A K + ++ A Sbjct: 174 SLEPDDLKTLIKRAIESERGLKNEVKINDEAVDEIV-RM--AGGDARKTLTILEAAA 227 >gi|297201931|ref|ZP_06919328.1| transcriptional regulator [Streptomyces sviceus ATCC 29083] gi|197712693|gb|EDY56727.1| transcriptional regulator [Streptomyces sviceus ATCC 29083] Length = 1118 Score = 44.0 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 14/102 (13%) Query: 17 KNDQPKNK--EEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSG 74 + P++ QL PR V + VR +D+W ++++VGP+G Sbjct: 259 REHSPRDTRVPHQL----PRAPR-----FFVGRGTD--VRQLDAWWRGGEDILLIVGPAG 307 Query: 75 SGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 GK+ LA WS + + F + LD D +P+ +E+ Sbjct: 308 VGKTALALHWSHQV-ARGFPDGQLFLDMRGFDDGEPMTVEEA 348 >gi|195125637|ref|XP_002007284.1| GI12851 [Drosophila mojavensis] gi|193918893|gb|EDW17760.1| GI12851 [Drosophila mojavensis] Length = 614 Score = 44.0 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 16/79 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 PSR ++L GP G GK+ LA + + + A L + + + Sbjct: 298 PSRGLLLHGPPGCGKTYLARAIAGQLKMPLLEVPATELIGGISGESEERIRDVFEQAIDN 357 Query: 107 TRKPVLLEDIDLLDFNDTQ 125 + + +++ID + N Sbjct: 358 SPCVLFIDEIDAIAGNRQW 376 >gi|170698492|ref|ZP_02889563.1| AAA ATPase central domain protein [Burkholderia ambifaria IOP40-10] gi|170136576|gb|EDT04833.1| AAA ATPase central domain protein [Burkholderia ambifaria IOP40-10] Length = 436 Score = 44.0 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 62/180 (34%), Gaps = 23/180 (12%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA + + + A I + ++ + T L Sbjct: 50 MILWGPPGVGKTTLARLTALAFDCEFIALSAVLGGVKDIRESMEQAKDTLNRTGRH-TIL 108 Query: 127 F----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N + + A T S+ V L SR A V + + Sbjct: 109 FVDEIHRFNKGQQDALLPFVESGLVTFIGATTENPSFEVNSA-LLSR---AQVYVLQSLN 164 Query: 175 DDFLEKVIVKM--FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL-ALSRGMGIT 231 DD + +++ + A + D K ++ + A + ++ ++ + IT Sbjct: 165 DDEMRQLLKRAQEIALDGLAFDDKAVDTLIGYAD---GDARRFLNLLEQAQTAASSSRIT 221 >gi|262402531|ref|ZP_06079092.1| ATPase AAA family [Vibrio sp. RC586] gi|262351313|gb|EEZ00446.1| ATPase AAA family [Vibrio sp. RC586] Length = 449 Score = 44.0 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 65/199 (32%), Gaps = 38/199 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G+GK+ LA + ++ + + A + I E+ L T L Sbjct: 54 MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAREN--KLSGRRTIL 111 Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172 F H N Q D ++ T L SR A V K++ Sbjct: 112 FVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKLTS 165 Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIV------QRMERSLVFAEKLVDKM 219 + + + + + AD R + + + RM + + + + Sbjct: 166 LNQQEILQALHQAIADTERGLGKVAAVFADNVLDRLAELVSGDARMSLNYLELLYDMARE 225 Query: 220 DNLALSRGMGITRSLAAEV 238 D+ I L AEV Sbjct: 226 DD---QGRKQIDLPLLAEV 241 >gi|237746808|ref|ZP_04577288.1| recombination factor protein RarA [Oxalobacter formigenes HOxBLS] gi|229378159|gb|EEO28250.1| recombination factor protein RarA [Oxalobacter formigenes HOxBLS] Length = 430 Score = 44.0 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 69/200 (34%), Gaps = 34/200 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA + +D + S + + I + L+ T Sbjct: 43 MILWGPPGVGKTTLARLMADGFNAEFIALSAVLSGVKDIREAVERARLI---RSGSGRRT 99 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + + A T S+ V L SR A V + Sbjct: 100 ILFVDEVHRFNKSQQDAFLPHVESGLFTFIGATTENPSFEVNNA-LLSR---AAVYVLKP 155 Query: 173 PD----DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228 D D + + + + + + + ++ + A +L++ ++ +A + Sbjct: 156 LDNGNLDTLVNRALERELD--GLTVSAEARTLLLMSAD---GDARRLLNNLEIVAQAARA 210 Query: 229 G----ITRSLAAEVLKETQQ 244 I +L E L + + Sbjct: 211 KNEEEIGVALLKETLGDAMR 230 >gi|221055976|ref|XP_002259126.1| hypothetical protein, conserved in Plasmodium species [Plasmodium knowlesi strain H] gi|193809197|emb|CAQ39899.1| hypothetical protein, conserved in Plasmodium species [Plasmodium knowlesi strain H] Length = 655 Score = 44.0 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 63/167 (37%), Gaps = 24/167 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAK--------------SLDSILIDTRKPVL 112 +IL GP GSGKS L N+ +K+ + S ++ L R + Sbjct: 227 LILCGPPGSGKSSLVNVIKNKTNNLFISLFHLNNLNNELRKIYDQSVINYKLSKKRTILC 286 Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 ++DI+ L+ N + +I + + LL T P + L SR + ++ Sbjct: 287 IKDINRLNKNQQENLLLI--LKKGYFYLLATCLFNP--MNILNASLSSR---CLYLYLNA 339 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 D L +I ++ I I+ I+ S A ++ + Sbjct: 340 YDKIELALIIKRIINKLDIDIEDNALNIIMNH---SCGDARVAINMI 383 >gi|33152375|ref|NP_873728.1| recombination factor protein RarA [Haemophilus ducreyi 35000HP] gi|33148598|gb|AAP96117.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP] Length = 446 Score = 44.0 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 38/200 (19%), Positives = 70/200 (35%), Gaps = 35/200 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G+GK+ LA I + + R S + + I + + T Sbjct: 52 MILWGPPGTGKTTLAEIIAQHFDAEVERLSAVTSGVKEIREAIEQA----KYNRQAGRKT 107 Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N Q D +++ T L SR A + + Sbjct: 108 LLFVDEVHRFNKSQQDAFLPYIEDGTVIFIGATTENPSFELNNA---LLSR---ARIYLL 161 Query: 171 SLPDDDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 D +E+++ D+Q + ++ + + +A + M ++A Sbjct: 162 KPLQADEIEQILQNALQDKQNGLGQEHFILADEVLKLLADYVNGDARYALNCLALMADMA 221 Query: 224 LS--RGMGITRSLAAEVLKE 241 S +G + ++L VL E Sbjct: 222 ESSPQGKVLNQALLIAVLGE 241 >gi|322795198|gb|EFZ18020.1| hypothetical protein SINV_06601 [Solenopsis invicta] Length = 784 Score = 44.0 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 29/50 (58%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + + +T FS A SL S + + ++ Sbjct: 593 PARGLLLFGPPGNGKTLLARAVATQCNATFFSISAASLTSKYVGEGEKLV 642 >gi|300709323|ref|XP_002996827.1| hypothetical protein NCER_100015 [Nosema ceranae BRL01] gi|239606153|gb|EEQ83156.1| hypothetical protein NCER_100015 [Nosema ceranae BRL01] Length = 408 Score = 44.0 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 47/142 (33%), Gaps = 43/142 (30%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------ILIDTR 108 P + V+L GP G+GK+ LA ++++ + I L + TR Sbjct: 185 PPKGVLLYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVREIFEMAKTR 244 Query: 109 KPVLL--EDIDLLDFN----------DTQLFHIINSIH----QYDSSLLMTARTF----P 148 + ++ +++D + +IN + + + +LM P Sbjct: 245 RACIIFFDEVDAFGGTRFEDSGENEVQRTMLELINQLDGFDSRGNIKVLMATNRPDTLDP 304 Query: 149 VSW---------GVCLPDLCSR 161 LPDL R Sbjct: 305 ALLRPGRLDRKVEFSLPDLEGR 326 >gi|221122395|ref|XP_002164973.1| PREDICTED: similar to predicted protein [Hydra magnipapillata] Length = 428 Score = 44.0 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 26/183 (14%), Positives = 63/183 (34%), Gaps = 38/183 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V+L GP G+GK+ LA + +++ST L + I ++ Sbjct: 208 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 267 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151 ++++D + + + ++N + ++ A Sbjct: 268 LPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTSQIKVIAATNRVDIL 327 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ P ++ +++ R++ + ++ + R Sbjct: 328 DPAL--LRSGRLD--RKIEFPNPTEEARARILQ--IHSRKMNVSPEVNFEELARCTDDFN 381 Query: 211 FAE 213 A+ Sbjct: 382 GAQ 384 >gi|160936160|ref|ZP_02083533.1| hypothetical protein CLOBOL_01056 [Clostridium bolteae ATCC BAA-613] gi|158440970|gb|EDP18694.1| hypothetical protein CLOBOL_01056 [Clostridium bolteae ATCC BAA-613] Length = 625 Score = 44.0 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 37/205 (18%), Positives = 64/205 (31%), Gaps = 54/205 (26%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 +LVGP G+GK+ LA + ++ FS + + Sbjct: 213 ALLVGPPGTGKTLLARAVAGEAHVPFFSISGSEFVEMFVGMGAAKVRDLFKQANDKAPCI 272 Query: 111 VLLEDIDLLD---------FNDT------QLFHIINSIHQYDSSLLMTARTFPVSW---- 151 V +++ID + ND QL ++ +++ A P S Sbjct: 273 VFIDEIDTIGKKRDGGGMSGNDEREQTLNQLLTEMDGFDGKKGVVILAATNRPESLDKAL 332 Query: 152 ----------GVCLPDLCSRLKAATVVK---ISLPDDDFLEKVIVKMFADRQIFIDKKLA 198 V LPDL R +A V + + DD + + + Sbjct: 333 LRPGRFDRRVPVELPDLKGR-EAILKVHGQNVKMSDDVDYNAIARATAGASGAELANIIN 391 Query: 199 AYIVQ--RMERSL---VFAEKLVDK 218 ++ RM RS E+ V+ Sbjct: 392 EAALRAVRMGRSAVVQADLEESVET 416 >gi|145349496|ref|XP_001419168.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144579399|gb|ABO97461.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 560 Score = 44.0 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 23/48 (47%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 V+L GP G GK+ LA + ++ +T FS A + + + + Sbjct: 99 VLLTGPPGCGKTLLARAVAGEAGATFFSLAASEFVEMFVGVGAARVRD 146 >gi|116071416|ref|ZP_01468685.1| ATPase [Synechococcus sp. BL107] gi|116066821|gb|EAU72578.1| ATPase [Synechococcus sp. BL107] Length = 726 Score = 44.0 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 61/170 (35%), Gaps = 24/170 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA I ++ +R+ + A + + ++ T L Sbjct: 58 LILHGPPGVGKTTLARIVANHTRAHFSNLNAVLAGVKDLRAEVDAAQQRLERHGLR-TIL 116 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H NS + + L+ A T + V L SR + + ++ + Sbjct: 117 FIDEVHRFNSAQQDALLPWVENGTVTLIGATTENPFFEVNKA-LVSR---SRLFRLLPLE 172 Query: 175 DDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 L +++ + D R + +D A ++V ++ Sbjct: 173 PKDLHQLLQRALTDQERGYGERSVVLDTDAANHLVDVAGGDARSLLNALE 222 >gi|15641121|ref|NP_230753.1| recombination factor protein RarA [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121591286|ref|ZP_01678581.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|153816923|ref|ZP_01969590.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|153823890|ref|ZP_01976557.1| conserved hypothetical protein [Vibrio cholerae B33] gi|227081281|ref|YP_002809832.1| hypothetical protein VCM66_1064 [Vibrio cholerae M66-2] gi|229505296|ref|ZP_04394806.1| ATPase AAA family [Vibrio cholerae BX 330286] gi|229511034|ref|ZP_04400513.1| ATPase AAA family [Vibrio cholerae B33] gi|229518155|ref|ZP_04407599.1| ATPase AAA family [Vibrio cholerae RC9] gi|229608315|ref|YP_002878963.1| recombination factor protein RarA [Vibrio cholerae MJ-1236] gi|254848238|ref|ZP_05237588.1| recombination factor protein RarA [Vibrio cholerae MO10] gi|255745521|ref|ZP_05419469.1| holliday junction DNA helicase RuvB [Vibrio cholera CIRS 101] gi|262158405|ref|ZP_06029521.1| holliday junction DNA helicase RuvB [Vibrio cholerae INDRE 91/1] gi|298498787|ref|ZP_07008594.1| conserved hypothetical protein [Vibrio cholerae MAK 757] gi|9655578|gb|AAF94267.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121546870|gb|EAX57028.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|126512510|gb|EAZ75104.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|126518593|gb|EAZ75816.1| conserved hypothetical protein [Vibrio cholerae B33] gi|227009169|gb|ACP05381.1| conserved hypothetical protein [Vibrio cholerae M66-2] gi|229344870|gb|EEO09844.1| ATPase AAA family [Vibrio cholerae RC9] gi|229350999|gb|EEO15940.1| ATPase AAA family [Vibrio cholerae B33] gi|229357519|gb|EEO22436.1| ATPase AAA family [Vibrio cholerae BX 330286] gi|229370970|gb|ACQ61393.1| ATPase AAA family [Vibrio cholerae MJ-1236] gi|254843943|gb|EET22357.1| recombination factor protein RarA [Vibrio cholerae MO10] gi|255736596|gb|EET91993.1| holliday junction DNA helicase RuvB [Vibrio cholera CIRS 101] gi|262029846|gb|EEY48494.1| holliday junction DNA helicase RuvB [Vibrio cholerae INDRE 91/1] gi|297543120|gb|EFH79170.1| conserved hypothetical protein [Vibrio cholerae MAK 757] Length = 449 Score = 44.0 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 65/199 (32%), Gaps = 38/199 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G+GK+ LA + ++ + + A + I E+ L T L Sbjct: 54 MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAREN--KLSGRRTIL 111 Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172 F H N Q D ++ T L SR A V K++ Sbjct: 112 FVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKLTS 165 Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIV------QRMERSLVFAEKLVDKM 219 + + + + + AD R + + + RM + + + + Sbjct: 166 LNQQEILQALHQAIADTERGLGKVAAVFADNVLDRLAELVNGDARMSLNYLELLYDMARE 225 Query: 220 DNLALSRGMGITRSLAAEV 238 D+ I L AEV Sbjct: 226 DD---QGRKQIDLPLLAEV 241 >gi|296243008|ref|YP_003650495.1| proteasome-activating nucleotidase [Thermosphaera aggregans DSM 11486] gi|296095592|gb|ADG91543.1| Proteasome-activating nucleotidase [Thermosphaera aggregans DSM 11486] Length = 404 Score = 44.0 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G GK+ LA + ++ +T S + L I ++ E Sbjct: 168 PPKGVLLYGPPGCGKTMLAKAVASEAGATFISIVGSELVQKFIGEGARIVRE 219 >gi|295091290|emb|CBK77397.1| phage DNA replication protein (predicted replicative helicase loader) [Clostridium cf. saccharolyticum K10] Length = 280 Score = 44.0 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 53/141 (37%), Gaps = 35/141 (24%) Query: 50 EQAVRLIDSWPS-WPSRVVIL-VGPSGSGKSCLANIWSDKSR-----------STRFSNI 96 A R ++ W + L G G+GKS LA ++ + +++ Sbjct: 111 GIARRYVEHWEDMRTDNIGCLFWGGVGTGKSYLAGCIANALMEKEIPVRMTNFALILNDL 170 Query: 97 AKSLDSI-----LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFP 148 A S + + ++L+D + + Q+F++I+S ++ L++T Sbjct: 171 AASFEGRNEYISRLCRYPLLILDDFGMERGTEYGLEQVFNVIDSRYRSGKPLIVTT---- 226 Query: 149 VSWGVCLPDLC-------SRL 162 + L DL SR+ Sbjct: 227 ---NLTLDDLRNPEDTAHSRI 244 >gi|255637103|gb|ACU18883.1| unknown [Glycine max] Length = 423 Score = 44.0 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 66/201 (32%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V+L GP G+GK+ +A + ++ +T L + I ++ Sbjct: 203 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEK 262 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151 +++ID + + ++N + D ++ A Sbjct: 263 SPCTIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADIL 322 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L + S RL ++ P ++ +++ R++ + + + R Sbjct: 323 DPAL--MRSGRLD--RKIEFPHPSEEARARILQ--IHSRKMNVHPDVNFEELARSTDDFN 376 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ L+ T Sbjct: 377 GAQLKAVCVEAGMLALRRDAT 397 >gi|229525720|ref|ZP_04415125.1| ATPase AAA family [Vibrio cholerae bv. albensis VL426] gi|229339301|gb|EEO04318.1| ATPase AAA family [Vibrio cholerae bv. albensis VL426] Length = 449 Score = 44.0 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 65/199 (32%), Gaps = 38/199 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G+GK+ LA + ++ + + A + I E+ L T L Sbjct: 54 MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAREN--KLSGRRTIL 111 Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172 F H N Q D ++ T L SR A V K++ Sbjct: 112 FVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKLTS 165 Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIV------QRMERSLVFAEKLVDKM 219 + + + + + AD R + + + RM + + + + Sbjct: 166 LNQQEILQALHQAIADTERGLGKVAAVFADNVLDRLAELVNGDARMSLNYLELLYDMARE 225 Query: 220 DNLALSRGMGITRSLAAEV 238 D+ I L AEV Sbjct: 226 DD---QGRKQIDLPLLAEV 241 >gi|237809054|ref|YP_002893494.1| recombination factor protein RarA [Tolumonas auensis DSM 9187] gi|237501315|gb|ACQ93908.1| AAA ATPase central domain protein [Tolumonas auensis DSM 9187] Length = 448 Score = 44.0 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 38/195 (19%), Positives = 81/195 (41%), Gaps = 32/195 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS-------------TRFSNIAKSLDSILIDTRKPVLL 113 +IL GP G+GK+ LA + + ++ + I ++ D+ R + + Sbjct: 52 MILWGPPGTGKTTLAELMARYCQADVERISAVTSGVKEIRAAIDRAKDNSYRARRTLLFV 111 Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++ + + F HI + + + + A T S+ + L SR A V + Sbjct: 112 DEVHRFNKSQQDAFLPHI-----EDGTIIFVGATTENPSFELNNA-LLSR---ARVYLLK 162 Query: 172 LPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 D+ + +V+ + D Q+ D+ + +VQ ++ A ++ ++++A S Sbjct: 163 RLTDEEIYQVVQQALTDPRGLASEQLQFDEGVLKALVQLVDGDARKALNYLELLNDMADS 222 Query: 226 RG--MGITRSLAAEV 238 + I R L A V Sbjct: 223 QSGIKHIDRHLLAAV 237 >gi|150951374|ref|XP_001387688.2| 26S proteasome regulatory subunit [Scheffersomyces stipitis CBS 6054] gi|149388540|gb|EAZ63665.2| 26S proteasome regulatory subunit [Pichia stipitis CBS 6054] Length = 427 Score = 44.0 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 62/178 (34%), Gaps = 40/178 (22%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + ++ GP G+GK+ LA + +S +T A L + I ++ Sbjct: 206 PPKGALMYGPPGTGKTLLARACAAQSGATFLKLAAPQLVQMFIGDGAKLVRDAFALAKEK 265 Query: 113 ------LEDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSW 151 ++++D + + ++N D ++ A + Sbjct: 266 APTIIFIDELDAIGTKRFDSDKSGDREVQRTMLELLNQLDGFDSDDRVKVLAATNRVDTL 325 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 L L S RL ++ LP ++ E V+ R++ D + + + RS Sbjct: 326 DPAL--LRSGRLD--RKIEFPLPSEEARESVLKIHA--RKLNCDNNSVNW--RELARS 375 >gi|145594367|ref|YP_001158664.1| recombination factor protein RarA [Salinispora tropica CNB-440] gi|145303704|gb|ABP54286.1| Recombination protein MgsA [Salinispora tropica CNB-440] Length = 477 Score = 44.0 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 60/157 (38%), Gaps = 28/157 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI---DLLDFND 123 VIL GP GSGK+ +A++ + + + A + + +++ Sbjct: 50 VILWGPPGSGKTTIAHLVAGATDRRFVAMSALNAGVKDVRA----VIDAARRQRRAGGPQ 105 Query: 124 TQLF----HIIN--------SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 T LF H + + + + L+ A T + V P L SR ++ + Sbjct: 106 TVLFIDEVHRFSKTQQDSLLAAVEDRTVTLLAATTENPYFSVISP-LLSR---CVLLTLQ 161 Query: 172 LPDDDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQ 203 DDD + ++ + D R + + + ++V+ Sbjct: 162 PLDDDAVRSLLRRAVVDGRGLGGTPVLAPEAEEHLVR 198 >gi|153802127|ref|ZP_01956713.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|124122320|gb|EAY41063.1| conserved hypothetical protein [Vibrio cholerae MZO-3] Length = 449 Score = 44.0 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 65/199 (32%), Gaps = 38/199 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G+GK+ LA + ++ + + A + I E+ L T L Sbjct: 54 MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAREN--KLSGRRTIL 111 Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172 F H N Q D ++ T L SR A V K++ Sbjct: 112 FVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKLTS 165 Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIV------QRMERSLVFAEKLVDKM 219 + + + + + AD R + + + RM + + + + Sbjct: 166 LNQQEILQALHQAIADTERGLGKVAAVFADNVLDRLAELVNGDARMSLNYLELLYDMARE 225 Query: 220 DNLALSRGMGITRSLAAEV 238 D+ I L AEV Sbjct: 226 DD---QGRKQIDLPLLAEV 241 >gi|119719222|ref|YP_919717.1| AAA family ATPase, CDC48 subfamily protein [Thermofilum pendens Hrk 5] gi|119524342|gb|ABL77714.1| AAA family ATPase, CDC48 subfamily [Thermofilum pendens Hrk 5] Length = 732 Score = 44.0 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 76/201 (37%), Gaps = 49/201 (24%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRKP 110 P + ++L GP G+GK+ LA ++++ + + + L I + ++ Sbjct: 216 PPKGILLYGPPGTGKTLLAKAVANETDAYFIAINGPEIMSKFYGESEQRLREIFEEAKEH 275 Query: 111 ----VLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + +++ID + QL +++ + +++ A P + Sbjct: 276 APAIIFIDEIDAIAPKREEVTGEVEKRVVAQLLALMDGLEARGDVIVIGATNRPNALDPA 335 Query: 152 -----------GVCLPDLCSRLKAATVVKISLPDDDFLEKV-IVKMFADRQIFIDKKLAA 199 + +PD RL+ + K+ + V + K+ F+ +AA Sbjct: 336 LRRPGRFDREIEIGIPDKRGRLE---IFKVHTRSMPLAKDVDLEKLAEITHGFVGADIAA 392 Query: 200 YIVQRMERSLVFAEKLVDKMD 220 + R E ++ +++ K+D Sbjct: 393 --LCR-EAAMKALRRVLPKID 410 Score = 38.2 bits (88), Expect = 0.99, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 19/32 (59%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + ++L GP G+GK+ LA + +S + S Sbjct: 489 PPKGILLYGPPGTGKTLLAKAVATESEANFVS 520 >gi|15920392|ref|NP_376061.1| hypothetical protein ST0209 [Sulfolobus tokodaii str. 7] gi|15621174|dbj|BAB65170.1| 689aa long hypothetical SAV protein [Sulfolobus tokodaii str. 7] Length = 689 Score = 44.0 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 52/142 (36%), Gaps = 42/142 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTRKP 110 P + ++L GP G GK+ LA ++++ + + + L I D +K Sbjct: 145 PPKGILLYGPPGVGKTLLAKAVANETEAYFTSINGPEIMSKFYGESEQRLREIFEDAKKH 204 Query: 111 ----VLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFP------ 148 + +++ID + ++ QL +++ + + +++ A P Sbjct: 205 APAIIFIDEIDAIAPKRDEVIGEVERRVVAQLLTLMDGLESRGNVIVIAATNRPNAVDPA 264 Query: 149 --------VSWGVCLPDLCSRL 162 + LPD RL Sbjct: 265 LRRPGRFDREIEIPLPDKQGRL 286 Score = 37.4 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 19/32 (59%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + ++L GP G+GK+ LA + +S + + Sbjct: 418 PPKGILLFGPPGTGKTMLAKAVATESGANFIA 449 >gi|16519670|ref|NP_443790.1| putative transposase number 2 of insertion sequence NGRIS-3c [Sinorhizobium fredii NGR234] gi|16519818|ref|NP_443938.1| putative transposase number 2 of insertion sequence NGRIS-3b [Sinorhizobium fredii NGR234] gi|16519948|ref|NP_444068.1| putative transposase number 2 of insertion sequence NGRIS-3a [Sinorhizobium fredii NGR234] gi|227818346|ref|YP_002822317.1| transposase number 2 for insertion sequence NGRIS-3d [Sinorhizobium fredii NGR234] gi|227819172|ref|YP_002823143.1| transposase number 2 for insertion sequence NGRIS-3e [Sinorhizobium fredii NGR234] gi|227819723|ref|YP_002823694.1| transposase number 2 for insertion sequence NGRIS-3f [Sinorhizobium fredii NGR234] gi|2497396|sp|P55380|Y4BM_RHISN RecName: Full=Putative insertion sequence ATP-binding protein y4bM/y4kI/y4tA gi|11352866|pir||T47074 hypothetical protein Y4kI [imported] - Rhizobium sp. (NGR234) plasmid pNGR234a gi|2182321|gb|AAB91628.1| putative transposase number 2 of insertion sequence NGRIS-3c [Sinorhizobium fredii NGR234] gi|2182485|gb|AAB91740.1| putative transposase number 2 of insertion sequence NGRIS-3b [Sinorhizobium fredii NGR234] gi|2182631|gb|AAB91855.1| putative transposase number 2 of insertion sequence NGRIS-3a [Sinorhizobium fredii NGR234] gi|227337345|gb|ACP21564.1| putative transposase number 2 for insertion sequence NGRIS-3d [Sinorhizobium fredii NGR234] gi|227338171|gb|ACP22390.1| putative transposase number 2 for insertion sequence NGRIS-3e [Sinorhizobium fredii NGR234] gi|227338722|gb|ACP22941.1| putative transposase number 2 for insertion sequence NGRIS-3f [Sinorhizobium fredii NGR234] Length = 263 Score = 44.0 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 20/111 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS-------TRFSNIAKSLDSILIDTRKP--------- 110 +I+ G +G+GKS LA + ++ R + + L +D P Sbjct: 108 LIITGHTGTGKSWLACAFGRQAARLGHSVLYVRVPRMFEELALARLDGSFPRLIDRLTRV 167 Query: 111 --VLLEDIDLLDFNDTQLFHIINSIHQ--YDSSLLMTARTFPVSWGVCLPD 157 ++L+D +D Q FH+ + + S L+TA+ SW + D Sbjct: 168 QLLILDDFGTHTLSDQQRFHLFEIVEERYQRKSTLITAQVPVASWHDLIAD 218 >gi|297578710|ref|ZP_06940638.1| ATPase [Vibrio cholerae RC385] gi|297536304|gb|EFH75137.1| ATPase [Vibrio cholerae RC385] Length = 449 Score = 44.0 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 65/199 (32%), Gaps = 38/199 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G+GK+ LA + ++ + + A + I E+ L T L Sbjct: 54 MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAREN--KLSGRRTIL 111 Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172 F H N Q D ++ T L SR A V K++ Sbjct: 112 FVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKLTS 165 Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIV------QRMERSLVFAEKLVDKM 219 + + + + + AD R + + + RM + + + + Sbjct: 166 LNQQEILQALHQAIADSERGLGKVAAVFADNVLDRLAELVSGDARMSLNYLELLYDMARE 225 Query: 220 DNLALSRGMGITRSLAAEV 238 D+ I L AEV Sbjct: 226 DD---QGRKQIDLPLLAEV 241 >gi|291515550|emb|CBK64760.1| Recombination protein MgsA [Alistipes shahii WAL 8301] Length = 425 Score = 44.0 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 55/147 (37%), Gaps = 26/147 (17%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS-----LDSILIDTRKPVLLED-IDL 118 IL GP G GK+ LA I + + F+ A + + ++ RK + L Sbjct: 41 PSFILWGPPGVGKTTLAKIVATQLERPFFTLSAVTSGVKDVREVIESARKQRFFDQKAPL 100 Query: 119 LDFNDTQLFHIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 L ++ H N + L+ A T S+ V P L SR V + Sbjct: 101 LFIDEI---HRFNKSQQDSLLGAVEQGVFTLIGATTENPSFEVISP-LLSR---CQVYIL 153 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKL 197 +D L+ ++ DR + D +L Sbjct: 154 KSLEDKDLQTLL-----DRALTTDTEL 175 >gi|218262943|ref|ZP_03477241.1| hypothetical protein PRABACTJOHN_02921 [Parabacteroides johnsonii DSM 18315] gi|218223042|gb|EEC95692.1| hypothetical protein PRABACTJOHN_02921 [Parabacteroides johnsonii DSM 18315] Length = 424 Score = 44.0 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 62/163 (38%), Gaps = 30/163 (18%) Query: 41 DDLL-----VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS----- 90 DD + V ++ID+ IL GP G GK+ LA I S+K + Sbjct: 16 DDYIGQKHLVGPG-AVLRKMIDA---GRVPSFILWGPPGVGKTTLAQIISNKLEAPFYTL 71 Query: 91 TRFSNIAKSLDSILIDTRK---------PVLLEDIDLLDFNDTQLFHIINSIHQYDSSLL 141 + S+ K + ++ + + +++I + ++N++ + L Sbjct: 72 SAISSGVKDVREVIEKAKGNRFFNTVSPILFIDEIHRFSKSQQD--SLLNAV-ETGVVTL 128 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + A T S+ V P L SR V + + L ++ K Sbjct: 129 IGATTENPSFEVIRP-LLSR---CQVYVLKSLEKADLLTLLNK 167 >gi|322699632|gb|EFY91392.1| cell division control protein Cdc48 [Metarhizium acridum CQMa 102] Length = 818 Score = 44.0 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 49/121 (40%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R V+L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 252 PPRGVLLYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 311 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + + ++M A P S Sbjct: 312 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSIDPA 371 Query: 155 L 155 L Sbjct: 372 L 372 >gi|312131534|ref|YP_003998874.1| holliday junction DNA helicase ruvb [Leadbetterella byssophila DSM 17132] gi|311908080|gb|ADQ18521.1| Holliday junction DNA helicase RuvB [Leadbetterella byssophila DSM 17132] Length = 339 Score = 44.0 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 43/201 (21%), Positives = 76/201 (37%), Gaps = 27/201 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G GK+ L++I +++ + LD LE D+L ++ Sbjct: 57 VLLHGPPGLGKTTLSHIIANELGANLKITSGPVLDKPSDLAGLLTSLEQNDVLFIDEI-- 114 Query: 127 FHIINSIHQY---------DSSLLMTARTFPVSWGVCLPD------------LCSRLKA- 164 H +N I + +++ + S + L L S L+A Sbjct: 115 -HRLNPIVEEYLYSAMEDYKIDIMLDSGPNARSVQIGLNPFTLIGATTRSGLLTSPLRAR 173 Query: 165 -ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 ++ D L K++V+ + Q ID+ A I +R + A L+ + + A Sbjct: 174 FGINSRLEYYDAQLLSKILVRSASILQTPIDEDGAYEIARRSRGTPRIANNLLRRTRDFA 233 Query: 224 LSRGMG-ITRSLAAEVLKETQ 243 +G G IT +A L Sbjct: 234 QVKGEGVITVEIAKMALAALD 254 >gi|304313998|ref|YP_003849145.1| cell division protein 48 [Methanothermobacter marburgensis str. Marburg] gi|302587457|gb|ADL57832.1| predicted cell division protein 48 [Methanothermobacter marburgensis str. Marburg] Length = 729 Score = 44.0 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 23/163 (14%), Positives = 62/163 (38%), Gaps = 33/163 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110 P + V++ GP G+GK+ LA +++S + + + S + + Sbjct: 235 PPKGVLMHGPPGTGKTLLAKAVANESDAHFIAINGPEIMSKYVGGSEERLREFFEEAEEN 294 Query: 111 ----VLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + +++ A P + Sbjct: 295 APSIIFIDEIDAIAPKREDVSGEVERRIVAQLLTLMDGLKSRGQVVVIGATNRPDALD-- 352 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L + ++I +PD + ++++ R + + + + Sbjct: 353 -PALRRPGRFDREIEIGVPDREERKEILQ--IHTRGMPLAEDV 392 >gi|302537728|ref|ZP_07290070.1| conserved hypothetical protein [Streptomyces sp. C] gi|302446623|gb|EFL18439.1| conserved hypothetical protein [Streptomyces sp. C] Length = 218 Score = 44.0 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 51/135 (37%), Gaps = 24/135 (17%) Query: 64 SRVVILVGPSGSGKSC--------LANI-----WSDKSRSTRFS------NIAKSLDSIL 104 +++VGP+G+GK+ L W + + ++ + + Sbjct: 75 GPSLLIVGPTGTGKTHQAYGAVRSLLAAGVRLRWEAVTAADLYARLRPRPGLDAERELHT 134 Query: 105 IDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCS 160 + ++L+D+ ++ + + +IN ++Y L+T L D + S Sbjct: 135 LARCPLLVLDDLGAAKGSEWTEELTYRLINYRYEYLRPTLLTTNLPIPKLRTALGDRVAS 194 Query: 161 RLKAATV-VKISLPD 174 RL T V + PD Sbjct: 195 RLSEMTHRVILDGPD 209 >gi|227822776|ref|YP_002826748.1| putative transposase number 2 for insertion sequence NGRIS-3g [Sinorhizobium fredii NGR234] gi|227341777|gb|ACP25995.1| putative transposase number 2 for insertion sequence NGRIS-3g [Sinorhizobium fredii NGR234] Length = 258 Score = 44.0 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 20/111 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS-------TRFSNIAKSLDSILIDTRKP--------- 110 +I+ G +G+GKS LA + ++ R + + L +D P Sbjct: 103 LIITGHTGTGKSWLACAFGRQAARLGHSVLYVRVPRMFEELALARLDGSFPRLIDRLTRV 162 Query: 111 --VLLEDIDLLDFNDTQLFHIINSIHQ--YDSSLLMTARTFPVSWGVCLPD 157 ++L+D +D Q FH+ + + S L+TA+ SW + D Sbjct: 163 QLLILDDFGTHTLSDQQRFHLFEIVEERYQRKSTLITAQVPVASWHDLIAD 213 >gi|139436961|ref|ZP_01771121.1| Hypothetical protein COLAER_00094 [Collinsella aerofaciens ATCC 25986] gi|133776608|gb|EBA40428.1| Hypothetical protein COLAER_00094 [Collinsella aerofaciens ATCC 25986] Length = 635 Score = 44.0 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 59/184 (32%), Gaps = 55/184 (29%) Query: 47 SAIEQAVRLIDSWPSWPS------RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 ++++ V ++ + R +LVGP G+GK+ LA + ++ FS Sbjct: 197 ESLKEVVDFLEKPQRYEEIGAKLPRGALLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEF 256 Query: 101 DSILIDTRKP----------------VLLEDIDLLD---------FNDT------QLFHI 129 + + V +++ID + ND QL Sbjct: 257 VEMFVGRGAAKVRDLFKQAKEKAPCIVFIDEIDTIGKKRDGGGFSGNDEREQTLNQLLTE 316 Query: 130 INSIHQYDSSLLMTARTFPVSW--------------GVCLPDLCSRLK----AATVVKIS 171 ++ + +++ A P S V LPDL R A VK Sbjct: 317 MDGFDNHKGIVVLAATNRPDSLDPALLRPGRFDRRIPVELPDLTGRKNILELHAKSVKTQ 376 Query: 172 LPDD 175 P D Sbjct: 377 PPID 380 >gi|5669047|gb|AAD46145.1| 19S proteasome regulatory complex subunit S6A [Arabidopsis thaliana] Length = 424 Score = 44.0 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 26/201 (12%), Positives = 66/201 (32%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V+L GP G+GK+ +A + ++ +T L + I ++ Sbjct: 204 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEK 263 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151 +++ID + + ++N + + ++ A Sbjct: 264 APCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADIL 323 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L + S RL ++ P ++ +++ R++ + + + R Sbjct: 324 DPAL--MRSGRLD--RKIEFPHPTEEARARILQ--IHSRKMNVHPDVHFEELARSTDDFH 377 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ L+ T Sbjct: 378 GAQLKAVCVEAGMLALRRDAT 398 >gi|148227348|ref|NP_001080249.1| 26S protease regulatory subunit 6A-A [Xenopus laevis] gi|3122634|sp|O42587|PR6AA_XENLA RecName: Full=26S protease regulatory subunit 6A-A; AltName: Full=26S proteasome AAA-ATPase subunit RPT5-A; AltName: Full=Proteasome 26S subunit ATPase 3-A; AltName: Full=Tat-binding protein 6; Short=TBP-6 gi|2648047|emb|CAA71487.1| TBP6 protein [Xenopus laevis] Length = 405 Score = 44.0 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 24/176 (13%), Positives = 65/176 (36%), Gaps = 38/176 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 203 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 262 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + + ++N + Q + + ++ A Sbjct: 263 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNMQVKVIAATNRVDIL 322 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206 L L S RL ++ +P+++ +++ R++ + + + R Sbjct: 323 DPAL--LRSGRLD--RKIEFPMPNEEARARIMQ--IHSRKMNVSPDVNYEELARCP 372 >gi|320156735|ref|YP_004189114.1| ATPase AAA family [Vibrio vulnificus MO6-24/O] gi|319932047|gb|ADV86911.1| ATPase AAA family [Vibrio vulnificus MO6-24/O] Length = 449 Score = 44.0 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 42/197 (21%), Positives = 70/197 (35%), Gaps = 34/197 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G+GK+ LA + ++ + + A + I E+ + T L Sbjct: 54 MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAREN--KMAGRRTIL 111 Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172 F H N Q D ++ T L SR A V K++ Sbjct: 112 FVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKLTS 165 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER-----------SLVFAEKLVDKMDN 221 + + + + + D+Q + A + ++R SL + E L D ++ Sbjct: 166 LNKEEISLALNQAINDKQRGLGNTPAHFADNVLDRLAELVNGDARMSLNYLELLYDMAED 225 Query: 222 LALSRGMGITRSLAAEV 238 A IT L AEV Sbjct: 226 NA-QGEKAITLKLLAEV 241 >gi|260577150|ref|ZP_05845127.1| AAA ATPase central domain protein [Rhodobacter sp. SW2] gi|259020624|gb|EEW23943.1| AAA ATPase central domain protein [Rhodobacter sp. SW2] Length = 436 Score = 44.0 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 35/199 (17%), Positives = 72/199 (36%), Gaps = 31/199 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I GP G GK+ +A + + +S + S I + + + I + T Sbjct: 56 LIFWGPPGVGKTTIARLLAHESDMAFVQISAIFTGVQDLRKVFEQA----RIRRANGQGT 111 Query: 125 QLF----HIINSIHQYD-------SSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N Q ++L+ T L SR A V+ + Sbjct: 112 LLFVDEIHRFNKAQQDGFLPYMEDGTILLVGATTENPSFELNAA---LMSR---AQVIVL 165 Query: 171 SLPDDDFLEKVIVKMFAD--RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228 D LE++ + D R + + + +++ + A L++++ A Sbjct: 166 ERLSLDDLERLAQRAEQDMGRALPLKAEAREALLEMADGDGRAALNLIEQV--AAWKLDK 223 Query: 229 GITR-SLAAEVLKETQQCD 246 + R +L+ +++ + D Sbjct: 224 PLDRETLSKRLMRRAAKYD 242 >gi|256832617|ref|YP_003161344.1| AFG1-family ATPase [Jonesia denitrificans DSM 20603] gi|256686148|gb|ACV09041.1| AFG1-family ATPase [Jonesia denitrificans DSM 20603] Length = 352 Score = 44.0 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 38/103 (36%), Gaps = 13/103 (12%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSR------------STRFSNIAKSLDSILIDTRKP 110 P + L G G GK+ L + + + + + T+ Sbjct: 80 PPPALYLDGGFGVGKTHLLAALAHHVGPHATAFGTFVEYTNLVGALGFANTVTQLATKTL 139 Query: 111 VLLEDIDLLDFNDTQLFH-IINSIHQYDSSLLMTARTFPVSWG 152 + +++ +L D DT L ++ + + +L T+ T P S G Sbjct: 140 ICIDEFELDDPGDTVLMSRLLRELADHGVALAATSNTLPESLG 182 >gi|224123612|ref|XP_002330164.1| predicted protein [Populus trichocarpa] gi|222871620|gb|EEF08751.1| predicted protein [Populus trichocarpa] Length = 423 Score = 44.0 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + ++L GP G+GK+ +A + ++ +T L + I ++ + Sbjct: 203 PPKGILLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRD 254 >gi|242021491|ref|XP_002431178.1| proteasome-activating nucleotidase, putative [Pediculus humanus corporis] gi|212516427|gb|EEB18440.1| proteasome-activating nucleotidase, putative [Pediculus humanus corporis] Length = 581 Score = 44.0 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 29/50 (58%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 PSR ++L GP G+GK+ LA + + +T FS A SL S + + ++ Sbjct: 339 PSRGLLLFGPPGNGKTLLARAVASECNATFFSISAASLTSKYVGEGEKLV 388 >gi|161501800|ref|NP_761751.2| recombination factor protein RarA [Vibrio vulnificus CMCP6] gi|319999484|gb|AAO11278.2| ATPase, AAA family [Vibrio vulnificus CMCP6] Length = 449 Score = 44.0 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 42/197 (21%), Positives = 70/197 (35%), Gaps = 34/197 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G+GK+ LA + ++ + + A + I E+ + T L Sbjct: 54 MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAREN--KMAGRRTIL 111 Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172 F H N Q D ++ T L SR A V K++ Sbjct: 112 FVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKLTS 165 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER-----------SLVFAEKLVDKMDN 221 + + + + + D+Q + A + ++R SL + E L D ++ Sbjct: 166 LNKEEISLALNQAINDKQRGLGNTPAHFADNVLDRLAELVNGDARMSLNYLELLYDMAED 225 Query: 222 LALSRGMGITRSLAAEV 238 A IT L AEV Sbjct: 226 NA-QGEKEITLKLLAEV 241 >gi|154495040|ref|ZP_02034045.1| hypothetical protein PARMER_04086 [Parabacteroides merdae ATCC 43184] gi|154085590|gb|EDN84635.1| hypothetical protein PARMER_04086 [Parabacteroides merdae ATCC 43184] Length = 426 Score = 44.0 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 62/163 (38%), Gaps = 30/163 (18%) Query: 41 DDLL-----VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS----- 90 DD + V ++ID+ IL GP G GK+ LA I S+K + Sbjct: 16 DDYIGQKHLVGPG-AVLRKMIDA---GRVPSFILWGPPGVGKTTLAQIISNKLEAPFYTL 71 Query: 91 TRFSNIAKSLDSILIDTRK---------PVLLEDIDLLDFNDTQLFHIINSIHQYDSSLL 141 + S+ K + ++ + + +++I + ++N++ + L Sbjct: 72 SAISSGVKDVREVIEKAKGNRFFNTVSPILFIDEIHRFSKSQQD--SLLNAV-ETGVVTL 128 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 + A T S+ V P L SR V + + L ++ K Sbjct: 129 IGATTENPSFEVIRP-LLSR---CQVYVLKSLEKADLLTLLNK 167 >gi|308799295|ref|XP_003074428.1| putative transitional endoplasmic reticulum ATPase (ISS) [Ostreococcus tauri] gi|116000599|emb|CAL50279.1| putative transitional endoplasmic reticulum ATPase (ISS) [Ostreococcus tauri] Length = 1228 Score = 44.0 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 64/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP GSGK+ +A ++++ + F SN+ K+ + + Sbjct: 277 PPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 336 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + ++M A P S Sbjct: 337 APAIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGMKSRSHIIVMGATNRPNSIDPA 396 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L R + + I +PD+ +V+ + + +D+ + Sbjct: 397 LR----RFGRFDREIDIGVPDEVGRLEVL--RIHTKNMKLDEAV 434 Score = 38.6 bits (89), Expect = 0.86, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 550 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 606 >gi|316968151|gb|EFV52477.1| 26S protease regulatory subunit 6B [Trichinella spiralis] Length = 341 Score = 44.0 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 39/110 (35%), Gaps = 12/110 (10%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + V+L GP G GK+ LA + ++ + + + +++ + D Sbjct: 181 PPQGVLLYGPPGCGKTMLAKAVASQTTAAFIRVVGSEFVQKYLGEGPRMVIMATNRADTL 240 Query: 123 DTQLFHI--------INSIHQYDSSLL---MTARTFPVSWGVCLPDLCSR 161 D L + L+ +T++ V L DL SR Sbjct: 241 DPALLRPGRLDRKIEFPLPDRRQKRLVFNTITSKMNLHE-DVELEDLISR 289 >gi|259502469|ref|ZP_05745371.1| replication-associated recombination protein A [Lactobacillus antri DSM 16041] gi|259169612|gb|EEW54107.1| replication-associated recombination protein A [Lactobacillus antri DSM 16041] Length = 442 Score = 44.0 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 36/202 (17%), Positives = 74/202 (36%), Gaps = 37/202 (18%) Query: 54 RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKP- 110 LI++ +I GP G GK+ LA I + ++++ FS + S+ I ++ Sbjct: 44 ELIENDQ---LSSLIFWGPPGVGKTTLAEIIAQQTKAHFVTFSAVTSSIKDIRKIMQEAE 100 Query: 111 ----------VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 +++I + F + S +L+ A T S+ + L S Sbjct: 101 QNREYGERTICFIDEIHRFNKAQQDAFLPF---VERGSIILIGATTENPSFEINSA-LLS 156 Query: 161 R-----LKAATVVKISLPDDDFLEKVIVKMFADRQIFID--KKLAAYIVQRMERSLVFAE 213 R LKA T + ++ +++ + A ++ +D I Q A Sbjct: 157 RCKVFVLKALTTADL----EEVIKRALNHPAAFPELEVDCQPDAIHLIAQFAN---GDAR 209 Query: 214 KLVDKMDNLALSRGM---GITR 232 ++ ++ L+ +T Sbjct: 210 VALNTLEMAVLNGQRDGKKVTI 231 >gi|221055153|ref|XP_002258715.1| 26S proteasome regulatory subunit 4 [Plasmodium knowlesi strain H] gi|193808785|emb|CAQ39487.1| 26S proteasome regulatory subunit 4, putative [Plasmodium knowlesi strain H] Length = 447 Score = 44.0 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 31/206 (15%), Positives = 68/206 (33%), Gaps = 45/206 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + VIL GP G+GK+ LA ++++ +T + L + ++ Sbjct: 225 PPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVREMFKVAEDH 284 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTA----RT 146 +++ID + + ++N + + D ++M Sbjct: 285 APSIVFIDEIDAVGTKRYEATSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIDSL 344 Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206 P D +++ PD ++ + + D L +++ + E Sbjct: 345 DPALIRPGRIDRK--------IQLPNPDTKTKRRIFQIHTSKMTMSPDVDLEEFVMSKDE 396 Query: 207 RSLVFAEKLVDKMDNLALSRGM-GIT 231 S + + + LAL IT Sbjct: 397 LSGADIKAICTEAGLLALRERRMKIT 422 >gi|167535575|ref|XP_001749461.1| hypothetical protein [Monosiga brevicollis MX1] gi|163772089|gb|EDQ85746.1| predicted protein [Monosiga brevicollis MX1] Length = 801 Score = 44.0 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 36/202 (17%), Positives = 75/202 (37%), Gaps = 54/202 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 232 PPRGILLYGPPGTGKTMIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 291 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148 + + +++ID + QL +++ + Q ++M A P Sbjct: 292 SPAIIFIDEIDAIAPKREKTNGEVERRIVSQLLTLMDGLKQRAHVIVMGATNRPNSIDPA 351 Query: 149 --------VSWGVCLPDLCSRLK--AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198 + +PD RL+ + L DD L K+ + ++ LA Sbjct: 352 LRRFGRFDRELDIGIPDATGRLEILRIHTKNMKLADDVDL----EKIANETHGYVGADLA 407 Query: 199 AYIVQRMERSLVFAEKLVDKMD 220 A S +++ ++MD Sbjct: 408 ALC------SEAALQQIRERMD 423 Score = 38.6 bits (89), Expect = 0.76, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 505 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKA 561 >gi|149918222|ref|ZP_01906714.1| AAA ATPase [Plesiocystis pacifica SIR-1] gi|149820982|gb|EDM80389.1| AAA ATPase [Plesiocystis pacifica SIR-1] Length = 513 Score = 44.0 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 45/208 (21%), Positives = 74/208 (35%), Gaps = 33/208 (15%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV--LLEDIDLLDFN 122 +I GP G+GK+ LA I + ++ + + + D+ + D RK V E D Sbjct: 57 PSMIFWGPPGTGKTTLARIIASRTGAHF--DTLSATDAGVKDLRKAVERARERRD-YQGR 113 Query: 123 DTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 T LF H N + L+ A T S+ V L SR + + + Sbjct: 114 ATLLFVDEIHRFNKAQQDALLPHVEAGVCTLIGATTENPSFEVNAA-LLSRARVVQLRAL 172 Query: 171 SLPD--DDFLEKVI--VKMFADRQIFIDKKLAAYIVQ----RMERSLVFAEKLVDKMDNL 222 +P D + + RQ+ +L I R+L E VD + + Sbjct: 173 GIPQLVDILRAALEHDERGLGRRQVQASDRLLGAIALASQGDARRALNSLELAVDLVPDA 232 Query: 223 ALSRG-------MGITRSLAAEVLKETQ 243 G ++ L AE L ++ Sbjct: 233 DPDAGEGEEGTARELSPELVAEALGQSH 260 >gi|156096715|ref|XP_001614391.1| 26S proteasome regulatory subunit 4 [Plasmodium vivax SaI-1] gi|148803265|gb|EDL44664.1| 26S proteasome regulatory subunit 4, putative [Plasmodium vivax] Length = 447 Score = 44.0 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 31/206 (15%), Positives = 68/206 (33%), Gaps = 45/206 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + VIL GP G+GK+ LA ++++ +T + L + ++ Sbjct: 225 PPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVREMFKVAEDH 284 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTA----RT 146 +++ID + + ++N + + D ++M Sbjct: 285 APSIVFIDEIDAVGTKRYEATSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIDSL 344 Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206 P D +++ PD ++ + + D L +++ + E Sbjct: 345 DPALIRPGRIDRK--------IQLPNPDTKTKRRIFQIHTSKMTMSPDVDLEEFVMSKDE 396 Query: 207 RSLVFAEKLVDKMDNLALSRGM-GIT 231 S + + + LAL IT Sbjct: 397 LSGADIKAICTEAGLLALRERRMKIT 422 >gi|66816709|ref|XP_642364.1| AAA ATPase domain-containing protein [Dictyostelium discoideum AX4] gi|60470410|gb|EAL68390.1| AAA ATPase domain-containing protein [Dictyostelium discoideum AX4] Length = 886 Score = 44.0 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 12/31 (38%), Positives = 21/31 (67%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF 93 P + ++L GP G+GK+ LA I + ++ +T F Sbjct: 345 PPKGILLYGPPGTGKTLLARIVATQTNATLF 375 >gi|82704989|ref|XP_726782.1| 26S proteasome subunit 4 protein [Plasmodium yoelii yoelii str. 17XNL] gi|23482335|gb|EAA18347.1| 26S proteasome subunit 4-like protein [Plasmodium yoelii yoelii] Length = 447 Score = 44.0 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 31/206 (15%), Positives = 68/206 (33%), Gaps = 45/206 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + VIL GP G+GK+ LA ++++ +T + L + ++ Sbjct: 225 PPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVREMFKVAEDH 284 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTA----RT 146 +++ID + + ++N + + D ++M Sbjct: 285 APSIVFIDEIDAVGTKRYEATSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIDSL 344 Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206 P D +++ PD ++ + + D L +++ + E Sbjct: 345 DPALIRPGRIDRK--------IQLPNPDTKTKRRIFQIHTSKMTMSPDVDLEEFVMSKDE 396 Query: 207 RSLVFAEKLVDKMDNLALSRGM-GIT 231 S + + + LAL IT Sbjct: 397 LSGADIKAICTEAGLLALRERRMKIT 422 >gi|329120562|ref|ZP_08249225.1| replication-associated recombination protein A [Neisseria bacilliformis ATCC BAA-1200] gi|327460786|gb|EGF07120.1| replication-associated recombination protein A [Neisseria bacilliformis ATCC BAA-1200] Length = 456 Score = 44.0 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 60/153 (39%), Gaps = 23/153 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G GK+ LA I + + A S + D R+ + +I L T L Sbjct: 69 MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIREAIDKAEIALQQGRGTIL 126 Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 F H N Q D+ L L+T A T S+ V P L SR A V + Sbjct: 127 FVDEVHRFNKAQQ-DAFLPHVESGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQSL 181 Query: 174 DDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQ 203 D L + K+ A R I++ +V Sbjct: 182 SADDLNALTGKVLALPEYRNFAIEQDARELLVN 214 >gi|290981028|ref|XP_002673233.1| predicted protein [Naegleria gruberi] gi|284086815|gb|EFC40489.1| predicted protein [Naegleria gruberi] Length = 445 Score = 44.0 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA ++++ +T I L + ++ E Sbjct: 217 PPKGVLLYGPPGTGKTLLARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 268 >gi|119945376|ref|YP_943056.1| recombination factor protein RarA [Psychromonas ingrahamii 37] gi|119863980|gb|ABM03457.1| Recombination protein MgsA [Psychromonas ingrahamii 37] Length = 442 Score = 44.0 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 37/212 (17%), Positives = 78/212 (36%), Gaps = 34/212 (16%) Query: 57 DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLE 114 ++ + + +IL GP G+GK+ LA + + + R S + + I R + + Sbjct: 41 NALENGAAHSMILWGPPGTGKTTLAELIASYCDAHVERLSAVTSGIKEI----RAAIEIA 96 Query: 115 DIDLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCS 160 + + T LF H N Q D ++L T L S Sbjct: 97 QQNRTNGIRTLLFVDEVHRFNKAQQDAFLPYIEDGTILFIGATTENPSFELNNA---LLS 153 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMF------ADRQIFIDKKLAAYIVQRMERSLVFAEK 214 R A + + + + VI + A++ I + + Q ++ A Sbjct: 154 R---ARIYLLKKLSEAEIIAVIDQACSSVDGLANKNIQFVGDVKEKLAQLVQGDARKALN 210 Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 ++ + ++A+ ++ +L ++LKE + Sbjct: 211 YLELLADMAIDSEQSLSINL--DLLKEIAGRE 240 >gi|325114387|emb|CBZ49944.1| hypothetical protein NCLIV_004280 [Neospora caninum Liverpool] Length = 762 Score = 44.0 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 24/162 (14%), Positives = 59/162 (36%), Gaps = 35/162 (21%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILIDTR 108 R V+L G SG GK+ LA +++ + +N+ + + + Sbjct: 228 RGVLLHGSSGCGKTLLAKAIANECGANFLTVNGPEVMSKLAGESEANLRRIFEEAAALSP 287 Query: 109 KPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156 + +++ID + QL +++ + + +++ A P L Sbjct: 288 CLLFIDEIDSIASKRDKTQGEVEKRIVAQLLTLMDGVSSDKNIVVLAATNRPNQLDPALR 347 Query: 157 DLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 R + ++I +PD+ +++ K A + + + Sbjct: 348 ----RFGRFDREIEIPIPDEQGRTEILKKKAAK--MNLGSDV 383 >gi|294494935|ref|YP_003541428.1| ATPase AAA [Methanohalophilus mahii DSM 5219] gi|292665934|gb|ADE35783.1| AAA family ATPase, CDC48 subfamily [Methanohalophilus mahii DSM 5219] Length = 743 Score = 44.0 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 17/73 (23%) Query: 36 LGISRDDLLVHSAIEQAVRLIDS---WP-SWPSRV----------VILVGPSGSGKSCLA 81 + DD+ ++ A + I WP WP ++ ++L GP G+GK+ LA Sbjct: 459 PSVGWDDI---GGLDLARQDISEAVEWPLKWPDKISQMGIKPPTGILLYGPPGTGKTLLA 515 Query: 82 NIWSDKSRSTRFS 94 ++++ + S Sbjct: 516 QAVANEANANFIS 528 Score = 43.2 bits (101), Expect = 0.030, Method: Composition-based stats. Identities = 28/207 (13%), Positives = 69/207 (33%), Gaps = 52/207 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P + VIL GP G+GK+ +A + +S + + + D + Sbjct: 221 PPKGVILYGPPGTGKTLIARAVASESNAYFINIAGPEIMGKYYGESEERLRKIFDEAAEN 280 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + + +++ A Sbjct: 281 APSIIFVDEIDSIAPKREDVTGEVERRVVAQLLTLMDGMDERKQVVVIAAT---NRLDSI 337 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL----------------- 197 P L + ++I +PD + +++ R + +++ + Sbjct: 338 DPALRRPGRFDREIEIGVPDSEDRLEILQ--IHTRGMPLNENIDEEYFEHLAEYTQGFVG 395 Query: 198 AAYIVQRMERSLVFAEKLV--DKMDNL 222 A + E S+ +L+ +D Sbjct: 396 ADLLALVQEASMRALRRLLPDINLDEE 422 >gi|220935170|ref|YP_002514069.1| recombination factor protein RarA [Thioalkalivibrio sp. HL-EbGR7] gi|219996480|gb|ACL73082.1| recombination factor protein RarA [Thioalkalivibrio sp. HL-EbGR7] Length = 447 Score = 44.0 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 29/178 (16%), Positives = 57/178 (32%), Gaps = 31/178 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++ GP G+GK+ LA + + + + A I E + T L Sbjct: 55 MLFWGPPGTGKTTLARMIAHYCGAQFLTLSAVLSGVKDIRAAVEQARE-YRRMHGKPTVL 113 Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172 F H N Q D ++ T L SR++ + Sbjct: 114 FVDEVHRFNKSQQDAFLPHVEDGTIAFVGATTENPSFELNNA---LLSRVR---TYVLKA 167 Query: 173 PDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 D + +I + AD R + + +L + + + A + ++ ++ A Sbjct: 168 LTDGDIRAIIDRALADEERGLGGRHLHMADELRDRLARAAD---GDARRALNLLEIAA 222 >gi|295098785|emb|CBK87874.1| Recombination protein MgsA [Eubacterium cylindroides T2-87] Length = 445 Score = 44.0 bits (103), Expect = 0.019, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 52/135 (38%), Gaps = 22/135 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I GP G GK+ LA I + ++ S FS + + I ++ D + T Sbjct: 53 MIFWGPPGVGKTTLARIIAHQTESYFVDFSAVTSGIKEIKEVMKQA----DQRKVLGQKT 108 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + S +L+ A T S+ + L SR V ++ Sbjct: 109 ILFVDEIHRFNKAQQDAFLPYVEKGSIILIGATTENPSFEINSA-LLSR---CRVFVLNA 164 Query: 173 PDDDFLEKVIVKMFA 187 + LE +I + + Sbjct: 165 LEQKDLEDLIFRAIS 179 >gi|320164282|gb|EFW41181.1| valosin-containing protein [Capsaspora owczarzaki ATCC 30864] Length = 813 Score = 44.0 bits (103), Expect = 0.019, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 48/121 (39%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + ++++D + QL +++ + + ++M A P S Sbjct: 297 APSIIFIDELDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRSNVVVMAATNRPNSLDPA 356 Query: 155 L 155 L Sbjct: 357 L 357 Score = 38.2 bits (88), Expect = 1.1, Method: Composition-based stats. Identities = 36/216 (16%), Positives = 77/216 (35%), Gaps = 42/216 (19%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 PS+ V+ GP G GK+ LA +++ ++ SN+ D Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESESNVRDVFDKARSA 569 Query: 107 TRKPVLLEDIDLLDFND---------------TQLFHIINSIHQYDSSLLMTARTFPVSW 151 + +++D + + Q+ ++ ++ + ++ A P Sbjct: 570 APCVLFFDELDSIAKSRGGSSGDAGGASDRVINQILTEMDGMNVKKNVFIIGATNRPDII 629 Query: 152 GVCLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMER-S 208 + L RL ++ I LPD+ ++ A R+ I + Y+ + S Sbjct: 630 DSAV--LRPGRLD--QLIYIPLPDEPSRLAIL--KAALRKSPIAPDVDIDYLARSTNGFS 683 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 ++ + LA+ I + LA E ++ Q+ Sbjct: 684 GADLTEICQRACKLAIRE--SIDKELARERERKAQR 717 >gi|305663593|ref|YP_003859881.1| AAA ATPase central domain protein [Ignisphaera aggregans DSM 17230] gi|304378162|gb|ADM28001.1| AAA ATPase central domain protein [Ignisphaera aggregans DSM 17230] Length = 484 Score = 44.0 bits (103), Expect = 0.019, Method: Composition-based stats. Identities = 40/205 (19%), Positives = 76/205 (37%), Gaps = 41/205 (20%) Query: 55 LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS-----------NIAKSLDSI 103 +I P P ++I+ GP G GKS A + + + + Sbjct: 243 IISKAPYAPKGILII-GPPGVGKSVTAETIAGGLGLKLVEIRPSIYRSMWYGLTEKILEH 301 Query: 104 LIDTRK-----PVLLEDID----------LLDFNDTQLFHIINSIHQYDSSLLMTARTFP 148 L+ K +L++D+D ++ +F + + + LL+ P Sbjct: 302 LLKGLKNRKNIAILMDDVDFLVGRQISIHETHISEITIF--LRYLQEPSRPLLIMTTNTP 359 Query: 149 VSWGVCLPDLCSRLKAA---TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 L ++ +V + PD +F + +K +I +D+ + I +R+ Sbjct: 360 ELLDPAL------MRPGRIDVIVVMGYPDKEFRRYIALKSAERYRIKLDENILNSI-ERI 412 Query: 206 ERSLVFAEKLVDKMDNLALSRGMGI 230 R AE +D + LA S+G GI Sbjct: 413 TRWFTNAE--IDALIRLAASKGDGI 435 >gi|254568756|ref|XP_002491488.1| AAA-type ATPase that is regulated by Vta1p [Pichia pastoris GS115] gi|238031285|emb|CAY69208.1| AAA-type ATPase that is regulated by Vta1p [Pichia pastoris GS115] gi|328352002|emb|CCA38401.1| Vacuolar protein sorting-associating protein 4 [Pichia pastoris CBS 7435] Length = 426 Score = 44.0 bits (103), Expect = 0.019, Method: Composition-based stats. Identities = 32/145 (22%), Positives = 54/145 (37%), Gaps = 34/145 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P+ ++L GP G+GKS LA + ++ ST FS + L S + + ++ Sbjct: 160 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESERLV---------- 209 Query: 123 DTQLFHIINSIHQYDSSLLMT----ARTFPVSWGVCLPDLCSRLKAATVVKI----SLPD 174 QLF N + S++ A P D R+K +V++ + D Sbjct: 210 -KQLF---NMARENKPSIIFIDEVDALCGPRGENES--DASRRIKTELLVQMNGVGNDSD 263 Query: 175 DDF----------LEKVIVKMFADR 189 L+ I + F R Sbjct: 264 GVLVLGATNIPWQLDAAIRRRFEKR 288 >gi|254246062|ref|ZP_04939383.1| ATPase [Burkholderia cenocepacia PC184] gi|124870838|gb|EAY62554.1| ATPase [Burkholderia cenocepacia PC184] Length = 441 Score = 44.0 bits (103), Expect = 0.019, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 59/170 (34%), Gaps = 22/170 (12%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA + + + A I + ++ + T L Sbjct: 55 MILWGPPGVGKTTLARLTALAFDCEFIALSAVLGGVKDIRESMEQAKDTLNRTGRH-TIL 113 Query: 127 F----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N + + A T S+ V L SR A V + + Sbjct: 114 FVDEIHRFNKGQQDALLPFVESGLVTFIGATTENPSFEVNSA-LLSR---AQVYVLKSLN 169 Query: 175 DDFLEKVIVKM--FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 DD + +++ + A + D K +V + A + ++ ++ Sbjct: 170 DDEMRQLLKRAQEIALDGLAFDDKAIDTLVGYAD---GDARRFLNLLEQA 216 >gi|331269735|ref|YP_004396227.1| ATPase [Clostridium botulinum BKT015925] gi|329126285|gb|AEB76230.1| ATPase, AAA family [Clostridium botulinum BKT015925] Length = 419 Score = 44.0 bits (103), Expect = 0.019, Method: Composition-based stats. Identities = 37/200 (18%), Positives = 75/200 (37%), Gaps = 36/200 (18%) Query: 67 VILVGPSGSGKSCLANIW------------SDKSRSTRFSNIAKSLDSIL--IDTRKPVL 112 +IL GP G GK+ LA+I + + K + +L R Sbjct: 54 IILYGPPGVGKTTLAHIISLDTKSEFVKLNATSAGVKEIREYIKKAEEVLKFYGKRTIFF 113 Query: 113 LEDIDLL--DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 +++I L L + +L+ A T + + L SR + + ++ Sbjct: 114 IDEIHSLKKGSQQDALL----EAIEKGIVILIGATTENPYFEINRA-LLSR---SKIFQL 165 Query: 171 SLPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 ++ + +V+ D R I ID+++ IV ++ S A ++ ++ Sbjct: 166 ESLKENEIVEVLQMALKDSTRGYGNLKINIDEEVLK-IVAKL--SGGDARGSLNTLELAI 222 Query: 224 LSRGMGI--TRSLAAEVLKE 241 LS + ++ E++KE Sbjct: 223 LSTPRRSDGSIAINKEIIKE 242 >gi|325833397|ref|ZP_08165846.1| ATPase, AAA family [Eggerthella sp. HGA1] gi|325485321|gb|EGC87790.1| ATPase, AAA family [Eggerthella sp. HGA1] Length = 446 Score = 44.0 bits (103), Expect = 0.019, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 62/141 (43%), Gaps = 24/141 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST---------RFSNIAKSLDSI-----LIDTRKPVL 112 VIL GP+G+GK+ LA++ ++ +++T S++ + +D+ R + Sbjct: 56 VILFGPAGTGKTSLAHVIAETTKATFVEVSAIGGTVSDLRREIDAADKRLSAFGLRTILF 115 Query: 113 LEDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++I + L H + +L+ A T + V L SR + VV++ Sbjct: 116 VDEIHRFNRSQQDALLH----AVEDRVLVLVGATTENPFFEVNSA-LISR---SRVVELH 167 Query: 172 LPDDDFLEKVIVKMFAD-RQI 191 D+ + ++ + D R + Sbjct: 168 GLSDEEIVSLVERALVDERGL 188 >gi|313113296|ref|ZP_07798900.1| conserved hypothetical protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310624388|gb|EFQ07739.1| conserved hypothetical protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 264 Score = 44.0 bits (103), Expect = 0.019, Method: Composition-based stats. Identities = 18/124 (14%), Positives = 43/124 (34%), Gaps = 21/124 (16%) Query: 50 EQAVRLIDSWP--SWPSRVVILVGPSGSGKSCLANIWSDKSR-----------STRFSNI 96 A ++ W + ++L G G+GKS A ++ + +++ Sbjct: 96 GMAHSYVERWEQMKEGNHGLLLWGKVGTGKSYFAGCIANALMEQEIPVRMTNFALILNDL 155 Query: 97 AKSLDSI-----LIDTRKPVLLEDIDLLDFNDTQLFHIINSI---HQYDSSLLMTARTFP 148 A S + + ++++D + + L + N I ++ L++T P Sbjct: 156 AASFEGRNEYIDRLCRYPLLIIDDFGMERGTEYGLEQVYNVIDSRYRSGKPLIVTTNHTP 215 Query: 149 VSWG 152 Sbjct: 216 DMLE 219 >gi|305673951|ref|YP_003865623.1| ATPase putative involved in protein degradation [Bacillus subtilis subsp. spizizenii str. W23] gi|305412195|gb|ADM37314.1| ATPase possibly involved in protein degradation [Bacillus subtilis subsp. spizizenii str. W23] Length = 423 Score = 44.0 bits (103), Expect = 0.019, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 52/142 (36%), Gaps = 21/142 (14%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS----------TRFSNIAKSLDSILIDTRKPVLLE 114 R ++L GP G+GK+ L + + T I + + + +++E Sbjct: 221 RGILLYGPPGNGKTTLVKSIAGSIDAPVAYWQITEFTSSETIEEVIQAARRLAPAVLVIE 280 Query: 115 DIDLLDFNDTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 DID + + F +N+ + L+ +P L + R A +I Sbjct: 281 DIDSMPEDVRSFF--LNTLDGATSKEGLFLIGTTNYPEEIDPGLMNRAGRFDRA--YEIG 336 Query: 172 LPDDDFLEKVIVKMFADRQIFI 193 LPD++ ++ R I Sbjct: 337 LPDEELR----LEYMKMRGFDI 354 >gi|158337198|ref|YP_001518373.1| recombination factor protein RarA/unknown domain fusion protein [Acaryochloris marina MBIC11017] gi|158307439|gb|ABW29056.1| ATPase, AAA family protein [Acaryochloris marina MBIC11017] Length = 742 Score = 44.0 bits (103), Expect = 0.019, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 55/149 (36%), Gaps = 25/149 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD--FNDT 124 +I GP G+GK+ LA I ++ +++ A + I + + E D T Sbjct: 55 LIFYGPPGTGKTTLAQIIANTTQAHFL---ALNAVLAGIKDIRSSVDEAQDRRGQYGQRT 111 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + + +L+ A T + V L SR + + ++ Sbjct: 112 ILFVDEVHRFNKAQQDALLPWVENGTVILIGATTENPYFEVNKA-LVSR---SRIFQLRS 167 Query: 173 --PDDDFLEKVIVKMFADRQIFIDKKLAA 199 PDD L +V+ + D+ Sbjct: 168 LMPDD--LRQVLERALQDKYFGYGDTAIE 194 >gi|172059904|ref|YP_001807556.1| recombination factor protein RarA [Burkholderia ambifaria MC40-6] gi|171992421|gb|ACB63340.1| AAA ATPase central domain protein [Burkholderia ambifaria MC40-6] Length = 436 Score = 44.0 bits (103), Expect = 0.019, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 62/180 (34%), Gaps = 23/180 (12%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA + + + A I + ++ + T L Sbjct: 50 MILWGPPGVGKTTLARLTALAFDCEFIALSAVLGGVKDIRESMEQAKDTLNRTGRH-TIL 108 Query: 127 F----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N + + A T S+ V L SR A V + + Sbjct: 109 FVDEIHRFNKGQQDALLPFVESGLVTFIGATTENPSFEVNSA-LLSR---AQVYVLQSLN 164 Query: 175 DDFLEKVIVKM--FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL-ALSRGMGIT 231 DD + +++ + A + D K ++ + A + ++ ++ + IT Sbjct: 165 DDEMRQLLKRAQEIALDGLAFDDKAVDTLIGYAD---GDARRFLNLLEQAQTAAASSRIT 221 >gi|213404048|ref|XP_002172796.1| 19S proteasome regulatory subunit Rpt5 [Schizosaccharomyces japonicus yFS275] gi|212000843|gb|EEB06503.1| 19S proteasome regulatory subunit Rpt5 [Schizosaccharomyces japonicus yFS275] Length = 439 Score = 44.0 bits (103), Expect = 0.019, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 59/167 (35%), Gaps = 38/167 (22%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + ++ GP G+GK+ LA + +S +T A L + I ++ Sbjct: 219 PPKGALMYGPPGTGKTLLARACAAQSNATFLKLAAPQLVQMFIGDGAKLVRDAFALAKEK 278 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151 ++++D + + + ++N + D ++ A + Sbjct: 279 SPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDTL 338 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L L S RL + LP+++ ++ R++ + + Sbjct: 339 DPAL--LRSGRLDRKL--EFPLPNEEARVGIL--RIHSRKMTVADDI 379 >gi|158339883|ref|YP_001521052.1| transposase-associated ATP-binding protein, putative [Acaryochloris marina MBIC11017] gi|158310124|gb|ABW31739.1| transposase-associated ATP-binding protein, putative [Acaryochloris marina MBIC11017] Length = 249 Score = 44.0 bits (103), Expect = 0.019, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 50/172 (29%), Gaps = 41/172 (23%) Query: 15 KQKNDQPKNKEEQLF-------FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSW--PSR 65 +Q E QL F F + A+ W Sbjct: 46 EQNRISRALSEAQLPYGKSWTNFEFDHIPSL----------NPAALMEFSQTTHWLESGS 95 Query: 66 VVILVGPSGSGKSC------------------LANIWSDKSRSTRFSNIAKSLDSILIDT 107 +++ GPSG+GK+ L + + +D Sbjct: 96 NILIFGPSGTGKTHVSSALGTSMIELGKRVKFLTATALVQQLQLAKLQLELQSLLSKLDR 155 Query: 108 RKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156 ++++D+ + +D + LF +I + SLL+TA W P Sbjct: 156 YDLLIIDDLGYVQKSDVETSVLFELI-AHRYERKSLLITANQPFSQWDKIFP 206 >gi|158294507|ref|XP_315644.3| AGAP005630-PA [Anopheles gambiae str. PEST] gi|157015594|gb|EAA44058.3| AGAP005630-PA [Anopheles gambiae str. PEST] Length = 804 Score = 44.0 bits (103), Expect = 0.019, Method: Composition-based stats. Identities = 37/205 (18%), Positives = 79/205 (38%), Gaps = 60/205 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 234 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 293 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148 + + +++ID + QL +++ + + ++M A P Sbjct: 294 SPAIIFIDEIDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNSIDPA 353 Query: 149 --------VSWGVCLPDLCSRLKAATVVKIS-----LPDDDFLEKVIVKMFADRQIFIDK 195 + +PD RL+ V++I L DD LE++ A+ + Sbjct: 354 LRRFGRFDREIDIGIPDATGRLE---VLRIHTKNMKLADDVDLEQI----AAESHGHVGA 406 Query: 196 KLAAYIVQRMERSLVFAEKLVDKMD 220 LA+ S +++ +KMD Sbjct: 407 DLASLC------SEAALQQIREKMD 425 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 507 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKA 563 >gi|300770508|ref|ZP_07080387.1| AAA family ATPase [Sphingobacterium spiritivorum ATCC 33861] gi|300762984|gb|EFK59801.1| AAA family ATPase [Sphingobacterium spiritivorum ATCC 33861] Length = 439 Score = 44.0 bits (103), Expect = 0.019, Method: Composition-based stats. Identities = 48/201 (23%), Positives = 78/201 (38%), Gaps = 34/201 (16%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD-FND 123 +IL GP G GK+ LA + + FS A I ++E D L FN Sbjct: 55 PSMILWGPPGVGKTTLALLMAKALDRPFFSLSAIQSGVKDIRE----VIEKADQLQKFNQ 110 Query: 124 TQ--LF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 Q LF H + + L+ A T S+ V L SR V Sbjct: 111 EQPILFIDEIHRFSKSQQDSLLGAVERGLVTLIGATTENPSFEVISA-LLSR---CQVYV 166 Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDK--KLAAY-IVQRMERSLVFAEKLVDKMD---NLA 223 + ++ L ++ ++ + ++ ++ Y + R+ S A KL++ ++ N + Sbjct: 167 LKHLTEEELIGIVNSAISEDEFLKEEKIEVKEYEALLRL--SGGDARKLLNVLELVVNAS 224 Query: 224 LSRGMGITRSLAAEVLKETQQ 244 LS IT VLK+ QQ Sbjct: 225 LSLNKPITNEF---VLKQVQQ 242 >gi|206561377|ref|YP_002232142.1| recombination factor protein RarA [Burkholderia cenocepacia J2315] gi|198037419|emb|CAR53354.1| putative ATPase protein [Burkholderia cenocepacia J2315] Length = 441 Score = 44.0 bits (103), Expect = 0.019, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 59/170 (34%), Gaps = 22/170 (12%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA + + + A I + ++ + T L Sbjct: 55 MILWGPPGVGKTTLARLTALAFDCEFIALSAVLGGVKDIRESMEQAKDTLNRTGRH-TIL 113 Query: 127 F----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N + + A T S+ V L SR A V + + Sbjct: 114 FVDEIHRFNKGQQDALLPFVESGLVTFIGATTENPSFEVNSA-LLSR---AQVYVLKSLN 169 Query: 175 DDFLEKVIVKM--FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 DD + +++ + A + D K +V + A + ++ ++ Sbjct: 170 DDEMRQLLKRAQEIALDGLAFDDKAIDTLVGYAD---GDARRFLNLLEQA 216 >gi|167464003|ref|ZP_02329092.1| recombination factor protein RarA [Paenibacillus larvae subsp. larvae BRL-230010] gi|322382959|ref|ZP_08056791.1| RarA-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153079|gb|EFX45537.1| RarA-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 434 Score = 44.0 bits (103), Expect = 0.019, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 55/137 (40%), Gaps = 21/137 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI---DLLDFND 123 ++L GP G+GK+ LANI S +++ ++D+ + D R+ ++E L Sbjct: 54 ILLYGPPGTGKTTLANIISKRTQGQFVK--LNAVDASVKDVRE--VIEQAKQTKALYGRK 109 Query: 124 TQLF----HIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 T LF H NS Q ++ T + L SR +T+ ++ Sbjct: 110 TILFLDEVHRFNSARQDALLPAVEQGIIVFIGATTENPFHYVNGALLSR---STLFQLRA 166 Query: 173 PDDDFLEKVIVKMFADR 189 + + + ADR Sbjct: 167 LTPEHALLAMRRALADR 183 >gi|8886769|gb|AAF80563.1|AF218313_1 putative helicase RUVBL [Homo sapiens] gi|55661736|emb|CAH73665.1| Werner helicase interacting protein 1 [Homo sapiens] Length = 445 Score = 44.0 bits (103), Expect = 0.019, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 16/83 (19%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA+I + S+ + S + + + D+ N+ Sbjct: 42 PSLILWGPPGCGKTTLAHIIASNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 96 Query: 125 QLF-----------HIINSIHQY 136 F H N Q Sbjct: 97 SFFKRKTILFIDEIHRFNKSQQD 119 >gi|116493046|ref|YP_804781.1| recombination factor protein RarA [Pediococcus pentosaceus ATCC 25745] gi|116103196|gb|ABJ68339.1| Recombination protein MgsA [Pediococcus pentosaceus ATCC 25745] Length = 425 Score = 44.0 bits (103), Expect = 0.019, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 64/169 (37%), Gaps = 27/169 (15%) Query: 67 VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKP-------VLLEDID 117 +IL GP G+GK+ +A+ S K + S + I + +LL++I Sbjct: 41 MILYGPPGTGKTSIASAISGSTKYAFRILNAATDSKKDLQIVAEEAKMSGTVILLLDEIH 100 Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL--P 173 LD D L H+ N + +L+ A T + P + SR + ++ P Sbjct: 101 RLDKTKQDFLLPHLEN-----GNIILIGATTENPYININ-PAIRSR---TQIFEVKPLQP 151 Query: 174 DDDFLEKVIVKMFADRQI-----FIDKKLAAYIVQRMERSLVFAEKLVD 217 D+ + + R + ID+ ++ + L A V+ Sbjct: 152 DEIKKAVLAAIKDSSRGLGELPIVIDEDALKFVSESTNGDLRSALNAVE 200 >gi|332251955|ref|XP_003275117.1| PREDICTED: nuclear valosin-containing protein isoform 1 [Nomascus leucogenys] Length = 855 Score = 44.0 bits (103), Expect = 0.019, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 59/168 (35%), Gaps = 42/168 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P R V+L GP G GK+ LAN + + A + + + + Sbjct: 296 PPRGVLLHGPPGCGKTLLANAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFEQAVSN 355 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151 + +++ID + QL + N++ L++ A P S Sbjct: 356 APCIIFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSL 415 Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKK 196 L +A + + +PD+ E+++ + R++ + + Sbjct: 416 DPALR------RAGRFDREICLGIPDEASRERILQTLC--RKLRLPQA 455 >gi|296416602|ref|XP_002837964.1| hypothetical protein [Tuber melanosporum Mel28] gi|295633858|emb|CAZ82155.1| unnamed protein product [Tuber melanosporum] Length = 503 Score = 44.0 bits (103), Expect = 0.019, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 44/116 (37%), Gaps = 21/116 (18%) Query: 65 RVVILVGPSGSGKSCL---------ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLED 115 R +L GP G+GK+ L +++ + ++ + ++ +R VLLED Sbjct: 255 RGYLLYGPPGTGKTSLSIALAGLFNLEVYALSLSAGSLTDDTLATLFTMLPSRCIVLLED 314 Query: 116 IDLL----DFNDTQLFHIIN----SIHQYDSSLLMTA----RTFPVSWGVCLPDLC 159 +D + F ++N + + L+MT R P DL Sbjct: 315 VDASNVKRAADPPTSFGLLNAIDGAASREGRILIMTTNHRERLDPALIRPGRVDLQ 370 >gi|168034023|ref|XP_001769513.1| predicted protein [Physcomitrella patens subsp. patens] gi|162679224|gb|EDQ65674.1| predicted protein [Physcomitrella patens subsp. patens] Length = 816 Score = 44.0 bits (103), Expect = 0.019, Method: Composition-based stats. Identities = 38/201 (18%), Positives = 75/201 (37%), Gaps = 52/201 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP GSGK+ +A ++++ + F SN+ K+ + + Sbjct: 247 PPKGILLFGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 306 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148 + +++ID + QL +++ + ++M A P Sbjct: 307 APSIIFIDEIDSIAPKREKTQGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPA 366 Query: 149 --------VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV-IVKMFADRQIFIDKKLAA 199 + +PD RL+ VV+I + E V + K+ D F+ LAA Sbjct: 367 LRRFGRFDREIDIGVPDEVGRLE---VVRIHTKNMKLAEDVDLEKIAHDTHGFVGADLAA 423 Query: 200 YIVQRMERSLVFAEKLVDKMD 220 + + + +KMD Sbjct: 424 LCTE------AALQCIREKMD 438 Score = 39.7 bits (92), Expect = 0.39, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 520 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDVFDKA 576 >gi|323142310|ref|ZP_08077142.1| replication-associated recombination protein A [Phascolarctobacterium sp. YIT 12067] gi|322413194|gb|EFY04081.1| replication-associated recombination protein A [Phascolarctobacterium sp. YIT 12067] Length = 428 Score = 44.0 bits (103), Expect = 0.020, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 57/147 (38%), Gaps = 20/147 (13%) Query: 54 RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL 113 R+I+ + V+ GP G+GK+ LA + + + + A S + Sbjct: 46 RMIERD---VLQSVLFYGPPGTGKTTLAKVIAHVTGEKFEAINAVSSGVPELRKLIAKAQ 102 Query: 114 EDIDLLDFNDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSR 161 ED T +F H N + + +L+ A T + + P L SR Sbjct: 103 ED-RRSGRGRTIVFIDEIHRFNKAQQDVLLPYVENGTIVLIGATTENPFFEINSP-LLSR 160 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFAD 188 +K + K+ P +++++ + AD Sbjct: 161 MKVVRLEKLQAP---QIQQILERAIAD 184 >gi|313652041|ref|YP_004046719.1| Chromosomal replication initiator DnaA [Calditerrivibrio nitroreducens DSM 19672] gi|312940792|gb|ADR19983.1| Chromosomal replication initiator DnaA [Calditerrivibrio nitroreducens DSM 19672] Length = 485 Score = 44.0 bits (103), Expect = 0.020, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWP--SRVVILVGPSGSGKSCLANI 83 S D+ LV S A + S +++ L GP+G GK+ L + Sbjct: 121 NTKYSFDNYLVDSTNHSAYMTMKSVAEGNYGGKIITLYGPTGVGKTHLVSA 171 >gi|218884579|ref|YP_002428961.1| proteasome-activating nucleotidase [Desulfurococcus kamchatkensis 1221n] gi|218766195|gb|ACL11594.1| proteasome-activating nucleotidase [Desulfurococcus kamchatkensis 1221n] Length = 418 Score = 44.0 bits (103), Expect = 0.020, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G GK+ LA + +S +T + + L I ++ E Sbjct: 184 PPKGVLLYGPPGCGKTMLAKAVAAESNATFIAIVGSELVQKFIGEGARIVRE 235 >gi|218201158|gb|EEC83585.1| hypothetical protein OsI_29256 [Oryza sativa Indica Group] Length = 837 Score = 44.0 bits (103), Expect = 0.020, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 59/164 (35%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110 P + ++L GP G+GK+ LA + +S + + S + + Sbjct: 248 PPKGILLYGPPGTGKTLLARAIAAESGAHFVVVNGPEIMSGMPGESEANLRAVFAEADAA 307 Query: 111 ----VLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 V +++ID + + QL +++ + +++ A P S Sbjct: 308 APSIVFMDEIDSIAPSREKAHGEVERRVVSQLLTLMDGLRPRAQVIVIGATNRPNSLDPA 367 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L R + + I +PD+ L ++ + + + + + Sbjct: 368 LR----RFGRFDRELDIGVPDE--LGRLEILRIHTKNMPLSDDV 405 >gi|118586592|ref|ZP_01544033.1| ATPase, AAA family [Oenococcus oeni ATCC BAA-1163] gi|290890861|ref|ZP_06553927.1| hypothetical protein AWRIB429_1317 [Oenococcus oeni AWRIB429] gi|118432971|gb|EAV39696.1| ATPase, AAA family [Oenococcus oeni ATCC BAA-1163] gi|290479512|gb|EFD88170.1| hypothetical protein AWRIB429_1317 [Oenococcus oeni AWRIB429] Length = 429 Score = 44.0 bits (103), Expect = 0.020, Method: Composition-based stats. Identities = 35/200 (17%), Positives = 72/200 (36%), Gaps = 37/200 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSR-STRFSNIA--------KSLDSILIDTRKPVLLEDID 117 +IL G G+GK+ +A+ + + S R N A + + + +LL++I Sbjct: 43 MILYGEPGTGKTSIASAIAGSTELSFRILNAATDGKKELQEVAEEGKMSGSVILLLDEIH 102 Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 LD D L H+ + +L+ A T V P + SR + + + Sbjct: 103 RLDKTKQDFLLPHL-----ESGRIVLIGATTENPYLSVT-PAIRSR---TQIFHVEALSE 153 Query: 176 DFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228 ++ I + +D+ I +D + ++ ++ ++ LS Sbjct: 154 KDIKTAINRALSDKENGLGNYNIKLDDQAKNHLSTATN---GDLRSALNGLELAVLSTKA 210 Query: 229 -------GITRSLAAEVLKE 241 IT + E ++ Sbjct: 211 VGKEKEIHITLPIIEETIQR 230 >gi|160893530|ref|ZP_02074315.1| hypothetical protein CLOL250_01082 [Clostridium sp. L2-50] gi|156864925|gb|EDO58356.1| hypothetical protein CLOL250_01082 [Clostridium sp. L2-50] Length = 813 Score = 44.0 bits (103), Expect = 0.020, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 5/95 (5%) Query: 66 VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID---TRKPVLLEDIDLLDFN 122 + G SG+GKS L + K + F + + + I RK V+++DI L + Sbjct: 31 TAYIFGVSGTGKSELITHYLGKRKYNLFHAGEITAEDLEIPEETARKIVVIDDIHELTWE 90 Query: 123 DTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCL 155 + I N I + D +++ R W L Sbjct: 91 EDDELRNAIFNLIIREDIWMILAGRCPVPPWLSTL 125 >gi|282858602|ref|ZP_06267764.1| recombination factor protein RarA [Prevotella bivia JCVIHMP010] gi|282588606|gb|EFB93749.1| recombination factor protein RarA [Prevotella bivia JCVIHMP010] Length = 423 Score = 44.0 bits (103), Expect = 0.020, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 71/192 (36%), Gaps = 22/192 (11%) Query: 67 VILVGPSGSGKSCLANIWSDK--SRSTRFSNIAKSLDSI-----------LIDTRKPVL- 112 IL GP G GK+ LA I + K + S + + + P+L Sbjct: 41 FILWGPPGVGKTTLAQIIAHKLETPFYTLSAVTSGVKDVREVIEKAKSNRFFSANSPILF 100 Query: 113 LEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++I + L + L+ A T S+ V P L SR + T+ + Sbjct: 101 IDEIHRFSKSQQDSLL----GAVEKGIVTLIGATTENPSFEVIRP-LLSRCQLYTLKSLE 155 Query: 172 LPD-DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL-SRGMG 229 D L++ I + +++ I +++ ++D + + L + Sbjct: 156 QKDLLALLQRAITEDIELKKLKIKLTETKALLRYSGGDARKLLNILDLIVSATLEEEKVD 215 Query: 230 ITRSLAAEVLKE 241 IT +L E L++ Sbjct: 216 ITDNLVEERLQQ 227 >gi|238926943|ref|ZP_04658703.1| recombination ATPase [Selenomonas flueggei ATCC 43531] gi|238885177|gb|EEQ48815.1| recombination ATPase [Selenomonas flueggei ATCC 43531] Length = 447 Score = 44.0 bits (103), Expect = 0.020, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 23/141 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I GP G GK+ LA I + ++++ FS + + I ++ D + Sbjct: 55 MIFWGPPGVGKTTLAQIIAARTKAEFITFSAVTSGIKEIRTVMQEA----DRRRMYGERI 110 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +F H N + S +L+ A T S+ + L SR V + Sbjct: 111 VVFVDEIHRFNKAQQDAFLPFVEKGSIVLIGATTENPSFEINNA-LLSR---CRVFVLQG 166 Query: 173 PDDDFLEKVIVKMFA-DRQIF 192 + +E+++ A DR++ Sbjct: 167 LTEADIERLLRHAIATDRELS 187 >gi|221642198|ref|YP_002533285.1| istB protein [Bacillus cereus Q1] gi|222094105|ref|YP_002528162.1| transposase (23) [Bacillus cereus Q1] gi|222096110|ref|YP_002530167.1| transposase (23) [Bacillus cereus Q1] gi|222096551|ref|YP_002530608.1| transposase (23) [Bacillus cereus Q1] gi|222098098|ref|YP_002532155.1| transposase (23) [Bacillus cereus Q1] gi|222098907|ref|YP_002532965.1| transposase (23) [Bacillus cereus Q1] gi|221238160|gb|ACM10870.1| transposase (23) [Bacillus cereus Q1] gi|221240168|gb|ACM12878.1| transposase (23) [Bacillus cereus Q1] gi|221240609|gb|ACM13319.1| transposase (23) [Bacillus cereus Q1] gi|221242156|gb|ACM14866.1| transposase (23) [Bacillus cereus Q1] gi|221242966|gb|ACM15676.1| transposase (23) [Bacillus cereus Q1] gi|221243133|gb|ACM15842.1| istB protein [Bacillus cereus Q1] Length = 254 Score = 44.0 bits (103), Expect = 0.020, Method: Composition-based stats. Identities = 22/140 (15%), Positives = 55/140 (39%), Gaps = 39/140 (27%) Query: 68 ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP----------------- 110 IL+GP G GK+ LA ++ ++ + ++ + S D ++ RK Sbjct: 103 ILLGPPGVGKTHLAVSFAIEAITQGYTALFLSADDLVAQCRKANDKGTLQRLVNRWSRPD 162 Query: 111 -VLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 ++++++ F++ F +++ ++ + +L T+ S L+ Sbjct: 163 VLIVDEVGYFPFDELTANVFFQVVSKRYEQGAMIL-TSN-------------KSYLEWGK 208 Query: 167 VVKISLPDDDFLEKVIVKMF 186 V DD ++ ++ Sbjct: 209 VFG----DDVLATAILDRLL 224 >gi|94502201|ref|ZP_01308696.1| chromosomal replication initiator protein DnaA [Oceanobacter sp. RED65] gi|94425662|gb|EAT10675.1| chromosomal replication initiator protein DnaA [Oceanobacter sp. RED65] Length = 181 Score = 44.0 bits (103), Expect = 0.020, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 32/76 (42%) Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 V + P+ + +++K I + + A ++ Q++ ++ E + ++ + Sbjct: 5 TVAVEPPELETRVAILMKKAEQEGIDLPHEAAFFVAQKIRSNVRELEGALKRVIANSAFT 64 Query: 227 GMGITRSLAAEVLKET 242 G IT E LK+ Sbjct: 65 GSKITLPFIKESLKDL 80 >gi|331085539|ref|ZP_08334623.1| hypothetical protein HMPREF0987_00926 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330407426|gb|EGG86928.1| hypothetical protein HMPREF0987_00926 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 438 Score = 44.0 bits (103), Expect = 0.020, Method: Composition-based stats. Identities = 33/202 (16%), Positives = 78/202 (38%), Gaps = 37/202 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I GP G+GK+ LA + ++ + + T+ + + R+ +D + T Sbjct: 55 IIFYGPPGTGKTTLAKVIANTTSANFTQINATVAGKKDMEEVVRQA---KDNQGMYGKKT 111 Query: 125 QLF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + + +L+ A T + V L SR +++ ++ Sbjct: 112 ILFVDEIHRFNKGQQDYLLPFVEDGTLILIGATTENPYFEVNGA-LISR---SSIFELKP 167 Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 + + + ++I++ D R + ID+ ++ A ++ ++ L+ Sbjct: 168 LEKEDIRRLIMRALTDEERGMGSYHAIIDEDALEFLADICG---GDARNALNAIELGVLT 224 Query: 226 RGMG------ITRSLAAEVLKE 241 IT + +E +++ Sbjct: 225 TERSEDGKIHITIDVVSECIQK 246 >gi|319953175|ref|YP_004164442.1| microtubule-severing atpase [Cellulophaga algicola DSM 14237] gi|319421835|gb|ADV48944.1| Microtubule-severing ATPase [Cellulophaga algicola DSM 14237] Length = 435 Score = 44.0 bits (103), Expect = 0.020, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 16/72 (22%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK----------------P 110 ++L GP G GK+ LA + + + + + + I + + Sbjct: 194 ILLYGPPGCGKTHLARATAGEINANFINVGINDILDMWIGSSERNLHEIFETARENTPCV 253 Query: 111 VLLEDIDLLDFN 122 + +++ID L N Sbjct: 254 IFIDEIDALGAN 265 >gi|153000734|ref|YP_001366415.1| recombination factor protein RarA [Shewanella baltica OS185] gi|151365352|gb|ABS08352.1| AAA ATPase central domain protein [Shewanella baltica OS185] Length = 443 Score = 44.0 bits (103), Expect = 0.020, Method: Composition-based stats. Identities = 38/196 (19%), Positives = 71/196 (36%), Gaps = 35/196 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLD---F 121 ++L GP G+GK+ LA + + S + R S + + I +E + Sbjct: 52 MMLWGPPGTGKTTLAELIAHYSNAHVERISAVTSGVKDIR------AAIEQAKAVAESRG 105 Query: 122 NDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 T LF H N + + + + A T S+ + L SR A V Sbjct: 106 QRTLLFVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEINNA-LLSR---ARVYL 161 Query: 170 ISLPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 I D + ++ + +D Q + + + Q + A L++ M ++ Sbjct: 162 IKRLSHDEIAHIVTQALSDTERGLGQHQFVMPTDVLTTLAQLCDGDARKALNLIELMSDM 221 Query: 223 ALSRGMGITRSLAAEV 238 L+ G T + +V Sbjct: 222 -LADGGTFTTEMLIQV 236 >gi|70993728|ref|XP_751711.1| AAA family ATPase [Aspergillus fumigatus Af293] gi|66849345|gb|EAL89673.1| AAA family ATPase, putative [Aspergillus fumigatus Af293] gi|159125367|gb|EDP50484.1| AAA family ATPase, putative [Aspergillus fumigatus A1163] Length = 539 Score = 44.0 bits (103), Expect = 0.020, Method: Composition-based stats. Identities = 35/219 (15%), Positives = 74/219 (33%), Gaps = 37/219 (16%) Query: 44 LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS--------- 94 LV LI+ +IL G +G+GK+ +A + + S Sbjct: 139 LVGP-NGVLRGLIEQDR---VPSMILWGHAGTGKTTIARVIASMVGSRFVEINSTSTGVA 194 Query: 95 ----NIAKSLDSILIDTRKPVLL-EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPV 149 A++ + + RK ++ ++I + +F + L+ A T Sbjct: 195 ECKKIFAEARSELGLTGRKTIVFCDEIHRFSKSQQDVFL---GPVESGQITLIGATTENP 251 Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ------IFIDKKLAAYIVQ 203 S+ V L SR +S D+ ++ ++ + +D +L Y+ + Sbjct: 252 SFKVQNA-LLSR---CRTFTLSKLSDEDVKSILDRALRVEGPNYSPSSLVDDELIEYLAR 307 Query: 204 RMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + A ++ ++ S+ E LK + Sbjct: 308 FSD---GDARTSLNLLELAMDLSKRP---SMTKEELKRS 340 >gi|331010747|gb|EGH90803.1| recombination factor protein RarA [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 440 Score = 44.0 bits (103), Expect = 0.020, Method: Composition-based stats. Identities = 36/210 (17%), Positives = 76/210 (36%), Gaps = 32/210 (15%) Query: 57 DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 ++ +I GP G GK+ LA + + S + F ++ L + + + + Sbjct: 40 EALEQGALHSMIFWGPPGVGKTTLARLLAKVSDAH-FETVSAVLAGVKEIRQAVEVAKQQ 98 Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162 T LF H N Q D +L+ T L SR Sbjct: 99 AGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154 Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLV 216 A V + D+ L K++ + + RQ+ + + ++ + +++ Sbjct: 155 --ARVYVLKSLDEAALRKLVHRALTEERGLGKRQLTLSDEGFTILMAAAD---GDGRRML 209 Query: 217 DKMDNLA-LSR-GMGITRSLAAEVLKETQQ 244 + ++N + L+ G I L +L ++++ Sbjct: 210 NLLENASDLAEDGSEIDVELLQSLLGDSRR 239 >gi|304570584|ref|YP_388490.2| recombination factor protein RarA [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 428 Score = 44.0 bits (103), Expect = 0.020, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 59/162 (36%), Gaps = 14/162 (8%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSIL--IDTRKPVLLEDIDLLD 120 ++ GP G GKS +A + + + R S L + + + ++L+++ Sbjct: 60 PSLLFFGPPGCGKSTIALLLARNTGQKYIRISAPEAGLQQLRKSLAGVRILVLDELHRFS 119 Query: 121 FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 F + + L+ + T S+ V L SR+ V+++ L Sbjct: 120 KAQQDFFLP---VLESGEVTLLASTTENPSFSVTRQ-LLSRM---HVLRLKPLAHSDLLT 172 Query: 181 VIVKMFADRQIFIDKKLAAYI--VQRME-RSLVFAEKLVDKM 219 + + + + + + V + R+L+ + V + Sbjct: 173 LARRGAEAQGAALKDDVCEMLATVAHGDARTLLNLVEYVAGL 214 >gi|288560704|ref|YP_003424190.1| proteasome-activating nucleotidase [Methanobrevibacter ruminantium M1] gi|288543414|gb|ADC47298.1| proteasome-activating nucleotidase [Methanobrevibacter ruminantium M1] Length = 424 Score = 44.0 bits (103), Expect = 0.020, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 28/57 (49%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P + ++L GP G+GK+ LA ++++ +T +A I ++ E +L Sbjct: 198 PPKGILLYGPPGTGKTLLAKAVANETNATFIKVVASEFVKKYIGEGARMVREVFELA 254 >gi|255036227|ref|YP_003086848.1| hypothetical protein Dfer_2465 [Dyadobacter fermentans DSM 18053] gi|254948983|gb|ACT93683.1| conserved hypothetical protein [Dyadobacter fermentans DSM 18053] Length = 379 Score = 44.0 bits (103), Expect = 0.020, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 11/92 (11%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL-----LEDID 117 ++V+IL G GK+ L ++ A+ LD + + + + V + D+D Sbjct: 17 SNKVLILYGARRVGKTHLMREVEEQFNGKSLFLNAEDLDIVALLSDRRVASFRRWVTDVD 76 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPV 149 LL ++ Q+ + + SL + +FP Sbjct: 77 LLIIDEAQV------VPEIGKSLKLLIDSFPK 102 >gi|78485111|ref|YP_391036.1| recombination factor protein RarA [Thiomicrospira crunogena XCL-2] gi|78363397|gb|ABB41362.1| Recombination protein MgsA [Thiomicrospira crunogena XCL-2] Length = 453 Score = 44.0 bits (103), Expect = 0.020, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 19/131 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +I GP G+GK+ LA + + +S +F N++ LD + + R V + F L Sbjct: 46 MIFWGPPGTGKTTLARLIAKQSD-LQFLNLSAVLDGV-KEVRAAVEQAKLHRQQFQQGSL 103 Query: 127 F-----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 H N + + + + A T S+ + L SR A V + Sbjct: 104 LFVDEVHRFNKAQQDAFLPFVEDGTFIFIGATTENPSFELNNA-LLSR---ARVYVLRSL 159 Query: 174 DDDFLEKVIVK 184 D+D L++V+ + Sbjct: 160 DEDDLQQVLNR 170 >gi|70726294|ref|YP_253208.1| recombination factor protein RarA [Staphylococcus haemolyticus JCSC1435] gi|68447018|dbj|BAE04602.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 422 Score = 44.0 bits (103), Expect = 0.020, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 71/200 (35%), Gaps = 39/200 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117 +I GP G GK+ +A S + + ++ ++ + + +LL++I Sbjct: 43 MIFYGPPGIGKTSIAKAISGSTDYKFRQLNAVTNSKKDMQMVVEEAKMSGQVILLLDEIH 102 Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 L D L H+ N +L+ T + P + SR A + ++ Sbjct: 103 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYSL 151 Query: 174 DDDFLEKVIVKMFAD--RQIF-----IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 D D + I + D R + +D+ Y + S ++ ++ LS Sbjct: 152 DHDDVRLAINRALNDSQRGLANYHPKVDEDALEYFATQ---SQGDVRSALNALELAVLSA 208 Query: 227 G-----MGITRSLAAEVLKE 241 IT A + L++ Sbjct: 209 SVENEIRHITLQDAKDCLQK 228 >gi|325120061|emb|CBZ55613.1| hypothetical protein NCLIV_060380 [Neospora caninum Liverpool] Length = 415 Score = 44.0 bits (103), Expect = 0.020, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 69/181 (38%), Gaps = 40/181 (22%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 194 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKMVRDAFELAKEK 253 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151 ++++D + + ++N + D ++ A P Sbjct: 254 APAIIFIDELDAIGTKRFDSELSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRPDVL 313 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL +++ P+++ E+++ R++ ++K+ + + + RS Sbjct: 314 DPAL--LRSGRLD--RKIELPHPNEEARERILQIHA--RKMNVNKQDVNF--RELARSTD 365 Query: 211 F 211 Sbjct: 366 D 366 >gi|317026370|ref|XP_001389502.2| hypothetical protein ANI_1_3008014 [Aspergillus niger CBS 513.88] Length = 781 Score = 44.0 bits (103), Expect = 0.020, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 17/75 (22%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST--------RFSNIAKSLDSILIDTRKPV-----LL 113 V+L GP G+GK+ LA +++ ++T S+IA + + + Sbjct: 512 VLLHGPPGTGKTHLARAIANEFKATMLWVKPADIVSDIAGDAEKAIHAAFTLAKKLSPCI 571 Query: 114 EDIDLLDFNDTQLFH 128 ID +D LFH Sbjct: 572 LFIDEVD----ALFH 582 >gi|289621142|emb|CBI51925.1| unnamed protein product [Sordaria macrospora] Length = 824 Score = 44.0 bits (103), Expect = 0.020, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 64/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R V+L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 257 PPRGVLLYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 316 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + + ++M A P S Sbjct: 317 SPAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSID-- 374 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + V I +PD +++ + + + + Sbjct: 375 -PALR-RFGRFDREVDIGIPDPTGRLEILQ--IHTKNMKLGDDV 414 >gi|162447688|ref|YP_001620820.1| Holliday junction DNA helicase-like ATPase [Acholeplasma laidlawii PG-8A] gi|161985795|gb|ABX81444.1| Holliday junction DNA helicase-like ATPase [Acholeplasma laidlawii PG-8A] Length = 412 Score = 44.0 bits (103), Expect = 0.020, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 71/187 (37%), Gaps = 28/187 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRF--------SNIAKSLDSILIDTRKPVLLEDIDL 118 IL GP G+GK+ +A ++SDKS + K + + +++++I Sbjct: 41 FILYGPPGTGKTTIAKLFSDKSMLDTYFFNASTDNKAKLKDILDMTAYHDVLIIVDEIHR 100 Query: 119 LDFN-DTQLFHIINSIHQYDSSLL--MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 + + L + +++ +T S + + SR + +I D Sbjct: 101 MKTDIQDYLL----PFLESGKAIMIGLTTLNPYQSINMAI---RSR---CHLYEIKALSD 150 Query: 176 DFLEKVIVKMFA--DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS--RGMGIT 231 +E I+ D I + A I++ S ++ +++ +L G IT Sbjct: 151 KDIEAAILNAIQYLDHDIHLTDDALAAIIRA---SNSEIRSALNLLESASLVVDDGQKIT 207 Query: 232 RSLAAEV 238 ++ ++ Sbjct: 208 SNIIRKL 214 >gi|330836935|ref|YP_004411576.1| membrane protease FtsH catalytic subunit [Spirochaeta coccoides DSM 17374] gi|329748838|gb|AEC02194.1| membrane protease FtsH catalytic subunit [Spirochaeta coccoides DSM 17374] Length = 658 Score = 44.0 bits (103), Expect = 0.021, Method: Composition-based stats. Identities = 32/204 (15%), Positives = 62/204 (30%), Gaps = 45/204 (22%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ + F + + Sbjct: 243 VLLVGPPGTGKTLLAKAVAGEAGVSFFHTSGSDFVEMFVGMGAARVRDLFEQGRKNAPCI 302 Query: 111 VLLEDIDLLDFNDTQLFHIINSIHQY---------------DSSLLMTARTFPVSWGVCL 155 + ++++D + N + ++M A P L Sbjct: 303 LFIDELDAVGRTRGGGLGGGNDEREQTLNQMLVEMDGFATTTGVIVMAATNRPDVLDPAL 362 Query: 156 PDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL--VFA 212 L R V + PD E ++ Q+ L R+ R+ Sbjct: 363 --LRPGRFDRQVTVAL--PDVVEREAILRIHAKKIQLEPSVDLG-----RIARATPGSSG 413 Query: 213 EKLVDKMDNLAL--SRGMGITRSL 234 L + ++ AL +R +T + Sbjct: 414 ADLANLINEAALFAARRKKLTVDM 437 >gi|330826232|ref|YP_004389535.1| AAA ATPase central domain-containing protein [Alicycliphilus denitrificans K601] gi|329311604|gb|AEB86019.1| AAA ATPase central domain protein [Alicycliphilus denitrificans K601] Length = 439 Score = 44.0 bits (103), Expect = 0.021, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 79/198 (39%), Gaps = 32/198 (16%) Query: 68 ILVGPSGSGKSCLANIWSDKSRSTRFS---------------NIAKSLDSILIDTRKPVL 112 IL GP G GK+ +A + ++ + S +A+S L+ R V Sbjct: 50 ILWGPPGVGKTTIARLMAEAFDAQFISISAVLGGVKDIRDAVQLAESAAGGLMPQRTIVF 109 Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 ++++ + + F + + A T S+ V L SR A V + Sbjct: 110 VDEVHRFNKSQQDAFLPH---VESGLFTFVGATTENPSFEVNSA-LLSR---AAVYVLQP 162 Query: 173 PDDDFLEKVIVKMFADRQI--FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG- 229 D L++++V+ D Q I+ + ++ + A +L++ ++ L+++ G Sbjct: 163 LTSDDLKQIVVR-AQDIQALPAIENEALERLIAYAD---GDARRLLNTLETLSVTAGQAK 218 Query: 230 ---ITRSLAAEVLKETQQ 244 IT + +VL E + Sbjct: 219 VETITDAWLLQVLGERMR 236 >gi|329766718|ref|ZP_08258261.1| AAA family ATPase, CDC48 subfamily protein [Candidatus Nitrosoarchaeum limnia SFB1] gi|329136973|gb|EGG41266.1| AAA family ATPase, CDC48 subfamily protein [Candidatus Nitrosoarchaeum limnia SFB1] Length = 728 Score = 44.0 bits (103), Expect = 0.021, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 59/159 (37%), Gaps = 33/159 (20%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK----P 110 V+L GP G+GK+ LA +++S++ S L I + R+ Sbjct: 214 VLLYGPPGTGKTLLAKAVANESQAHFISISGPEIMSKFYGESEARLREIFKEAREKAPSI 273 Query: 111 VLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158 + +++ID + Q+ +++ + +++ A P + P L Sbjct: 274 IFVDEIDSIAPKREEVTGEVERRVVSQMLSLMDGLEARGKVIVIAATNRPNAID---PAL 330 Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 + ++I +PD + ++ R + + + Sbjct: 331 RRPGRFDREIEIKVPDKKGRKDIL--AIHSRNMPLSDDV 367 Score = 38.2 bits (88), Expect = 1.1, Method: Composition-based stats. Identities = 13/36 (36%), Positives = 20/36 (55%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 R ++L GPSG+GK+ LA + +S + S L Sbjct: 485 RGILLHGPSGTGKTLLAKAVATQSEANFVSVRGPEL 520 >gi|323455953|gb|EGB11820.1| hypothetical protein AURANDRAFT_36060 [Aureococcus anophagefferens] Length = 571 Score = 44.0 bits (103), Expect = 0.021, Method: Composition-based stats. Identities = 23/170 (13%), Positives = 51/170 (30%), Gaps = 40/170 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTR-----------------------FSNIAKS 99 P R +L GP G GK+ L + + F+ K Sbjct: 16 PPRGALLHGPPGCGKTTLLRAAAYECGCNVEVLNGGDVAAKKPGEAEEVLRAKFAAAEKG 75 Query: 100 LDSILIDTRKPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTF 147 +++++I+ + QL +++ + +++ A Sbjct: 76 GAPASRPAPSVIMIDEIECIAQKRDKADSEQDKRICAQLLTLMDGLKPASGVVVLAATGK 135 Query: 148 PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L RL V + +PD+ +++ R + + + Sbjct: 136 PNDLDPALRRFG-RLD--REVALEVPDEAARREIL--AVKTRGMSLAGDV 180 >gi|297734936|emb|CBI17170.3| unnamed protein product [Vitis vinifera] Length = 927 Score = 44.0 bits (103), Expect = 0.021, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 70/182 (38%), Gaps = 21/182 (11%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS-NIAKSLDSILIDTRKPV--LLEDIDLL 119 P + ++L GP GSGK+ +A ++++ + F N + + + ++ + E+ + Sbjct: 196 PPKGILLYGPPGSGKTLIAKAVANETGAFFFCINGPEIMSKLAGESEGNLRKAFEEAEKN 255 Query: 120 DFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL-KAATVVKISLPDD 175 + QL +++ + +++ A P S P L R + + I +PD+ Sbjct: 256 APSIRIVSQLLTLMDGLKSRAHVIVIGATNRPNSID---PALR-RFGRFDREIDIGVPDE 311 Query: 176 DFLEKVIVKMFADRQIFIDKKLAAY---IVQRMER----SLVFAEKLVDKM-DNLALSRG 227 +V+ + + + I+ +ER S + + + AL Sbjct: 312 VGRLEVL--RIHTKNMKLSDDAIQKEKGIIVDLERIAKDSHGYVGADLAALCTEAALQSI 369 Query: 228 MG 229 Sbjct: 370 RE 371 Score = 40.9 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 25/57 (43%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA +++ ++ S L + + + E D Sbjct: 456 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTKWFGESEANVREIFDKA 512 >gi|190694814|gb|ACE88957.1| polyprotein [Sclerotinia sclerotiorum RNA virus L] Length = 1964 Score = 44.0 bits (103), Expect = 0.021, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 45/128 (35%), Gaps = 26/128 (20%) Query: 48 AIEQAVRLIDSWPSWPSRVVI--LVGPSGSGKSC------------------LANIWSDK 87 A A R+++ P +V+ +VGP GSGK+ LA+ W Sbjct: 633 ATALAKRVLEHPPPGSLPIVLAAIVGPPGSGKTHGLRALVGNLDAVIVPTNQLADSWRAH 692 Query: 88 SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTF 147 + T + + L + + +++++ L + H+I + + + Sbjct: 693 APDTAVFTVERFLADPPAEPYRRLVVDECFKLAPS-----HLI-RALAHGKTCYIAGDPA 746 Query: 148 PVSWGVCL 155 + L Sbjct: 747 QPRYEGSL 754 >gi|298243741|ref|ZP_06967548.1| signaling protein [Ktedonobacter racemifer DSM 44963] gi|297556795|gb|EFH90659.1| signaling protein [Ktedonobacter racemifer DSM 44963] Length = 199 Score = 44.0 bits (103), Expect = 0.021, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 57/147 (38%), Gaps = 22/147 (14%) Query: 63 PSRVV-ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 P R + +L GP+G+GKS A ++ F+ I D + V+ +D Sbjct: 18 PQRTLIVLCGPAGAGKSTFARNLVHANQHAGFAPTMI----ISSDYCRSVIFDDEASQQA 73 Query: 122 NDTQ--LFHII--NSIHQYDSSLLMTARTFPVSWGVC--LPDLCSRLKAATVVKISL--P 173 N LFH I + Q +++ A + +SW L +L R T + I P Sbjct: 74 NREAFDLFHFIIAKRMRQNRTTI---ADSTAISWDARRNLLELAHRYNYHTSLFIFNITP 130 Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAY 200 D + ++ RQ + + Y Sbjct: 131 D------ICLRHEQQRQRRVGADVINY 151 >gi|125975232|ref|YP_001039142.1| IstB-like ATP-binding protein [Clostridium thermocellum ATCC 27405] gi|125715457|gb|ABN53949.1| IstB-like ATP-binding protein [Clostridium thermocellum ATCC 27405] Length = 241 Score = 44.0 bits (103), Expect = 0.021, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 58/147 (39%), Gaps = 29/147 (19%) Query: 67 VILVGPSGSGKSCLANIW----SDKSRSTRFSNIAKSLDSILIDTRKPVL------LEDI 116 +IL GP G GK+ LA ++ R RF A ++ +L + L LE + Sbjct: 96 LILYGPVGLGKTHLATAIGVEACNQGRHVRFFRTASLVNQLLDAKAEGSLKRFLKQLEKV 155 Query: 117 DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD--LCS--- 160 +LL ++ LF +I+ ++ S+++T W D L S Sbjct: 156 ELLICDEWGFIPFEREGSQLLFQVISDCYER-KSMIITTNLEFSKWNGIFYDEKLTSAII 214 Query: 161 -RLK-AATVVKISLPDDDFLEKVIVKM 185 R+ + ++ P D + ++ K Sbjct: 215 DRIIHHSHLIVFDGPSDRLVNSLMRKQ 241 >gi|187933032|ref|YP_001885222.1| Holliday junction DNA helicase RuvB [Clostridium botulinum B str. Eklund 17B] gi|238691635|sp|B2TMZ2|RUVB_CLOBB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|187721185|gb|ACD22406.1| Holliday junction DNA helicase RuvB [Clostridium botulinum B str. Eklund 17B] Length = 344 Score = 44.0 bits (103), Expect = 0.021, Method: Composition-based stats. Identities = 38/201 (18%), Positives = 77/201 (38%), Gaps = 27/201 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G GK+ LANI + + +++ L+D D+L ++ Sbjct: 55 VLLYGPPGLGKTTLANIIAKEMTGDLKITSGPAIERAGDLAAILTTLKDYDVLFIDEI-- 112 Query: 127 FHIINSIHQ-------YDSSL--LMTARTFPVSWGVCLPD------------LCS--RLK 163 H +N + D +L ++ S + LP L S R + Sbjct: 113 -HRLNRSVEEILYPAMEDYALDIVIGKGAAAKSIRLDLPKFTLIGATTRIGMLTSPLRDR 171 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNL 222 + + D+ L++++++ A I ++ A I R + A +L+ ++ D Sbjct: 172 FGVLCAMEYYDETQLKEIVIRSAAVFGCKITEEGALEIASRSRGTPRIANRLLKRVRDYS 231 Query: 223 ALSRGMGITRSLAAEVLKETQ 243 + I+ A + L+ + Sbjct: 232 EVKSNKVISLKEARDALELLE 252 >gi|225432252|ref|XP_002271397.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|297736845|emb|CBI26046.3| unnamed protein product [Vitis vinifera] Length = 423 Score = 44.0 bits (103), Expect = 0.021, Method: Composition-based stats. Identities = 28/201 (13%), Positives = 66/201 (32%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V+L GP G+GK+ +A + ++ +T L + I ++ Sbjct: 203 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEK 262 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151 +++ID + + ++N + D ++ A Sbjct: 263 SPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADIL 322 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L + S RL ++ P +D +++ R++ + + + R Sbjct: 323 DPAL--MRSGRLD--RKIEFPHPSEDARARILQ--IHSRKMNVHPDVNFEELARSTDDFN 376 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ L+ T Sbjct: 377 GAQLKAVCVEAGMLALRRDAT 397 >gi|146415292|ref|XP_001483616.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC 6260] Length = 426 Score = 44.0 bits (103), Expect = 0.021, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + ++ GP G+GK+ LA + +S +T A L + I ++ + Sbjct: 205 PPKGALMYGPPGTGKTLLARACAAQSGATFLKLAAPQLVQMFIGDGAKLVRD 256 >gi|148550935|ref|YP_001260365.1| IstB ATP binding domain-containing protein [Sphingomonas wittichii RW1] gi|148503346|gb|ABQ71598.1| IstB domain protein ATP-binding protein [Sphingomonas wittichii RW1] Length = 242 Score = 44.0 bits (103), Expect = 0.021, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 47/114 (41%), Gaps = 22/114 (19%) Query: 65 RVVILVGPSGSGKSCLANIWSD---KSRSTR-----FSNIAKSLDSILIDTRKPVL--LE 114 R ++LVG +G+GK+ LA + +S + + + + I + L Sbjct: 99 RNIVLVGGTGTGKTHLAIAITANVVRSGARGRYFNTVDLVTRLEEEARIGKSGALAAQLS 158 Query: 115 DIDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 +DL+ ++ LFH+I+ +++ +S+++T W D Sbjct: 159 RLDLIVLDELGYLPFARSGGQLLFHLISKLYE-QTSVIITTNLAFGEWPTVFGD 211 >gi|170732290|ref|YP_001764237.1| recombination factor protein RarA [Burkholderia cenocepacia MC0-3] gi|169815532|gb|ACA90115.1| AAA ATPase central domain protein [Burkholderia cenocepacia MC0-3] Length = 436 Score = 44.0 bits (103), Expect = 0.021, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 59/170 (34%), Gaps = 22/170 (12%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA + + + A I + ++ + T L Sbjct: 50 MILWGPPGVGKTTLARLTALAFDCEFIALSAVLGGVKDIRESMEQAKDTLNRTGRH-TIL 108 Query: 127 F----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N + + A T S+ V L SR A V + + Sbjct: 109 FVDEIHRFNKGQQDALLPFVESGLVTFIGATTENPSFEVNSA-LLSR---AQVYVLKSLN 164 Query: 175 DDFLEKVIVKM--FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 DD + +++ + A + D K +V + A + ++ ++ Sbjct: 165 DDEMRQLLKRAQEIALDGLAFDDKAIDTLVGYAD---GDARRFLNLLEQA 211 >gi|329944922|ref|ZP_08292949.1| recombination factor protein RarA [Actinomyces sp. oral taxon 170 str. F0386] gi|328529733|gb|EGF56629.1| recombination factor protein RarA [Actinomyces sp. oral taxon 170 str. F0386] Length = 476 Score = 44.0 bits (103), Expect = 0.021, Method: Composition-based stats. Identities = 27/172 (15%), Positives = 63/172 (36%), Gaps = 24/172 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G GK+ +A + +D++ F ++ + + D RK T L Sbjct: 95 IVLWGPPGCGKTTVARLLADRTG-LVFEQVSATFSGVA-DLRKVFAAAARRREIGQGTLL 152 Query: 127 F----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISL 172 F H N + + +L+ T L SR V+ + Sbjct: 153 FVDEIHRFNRAQQDSFLPYVEDGTVVLVGATTENPSFELNGA---LLSR---CQVMVLRR 206 Query: 173 PDDDFLEKVIVKMFAD--RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 D+ L +++ + + R + + ++ ++ + + +V+++ Sbjct: 207 LDEVALTELLARAESLTGRSLALTEEARTALLSMADGDGRYLLGMVEQVLAA 258 >gi|326333625|ref|ZP_08199862.1| LigA [Nocardioidaceae bacterium Broad-1] gi|325948531|gb|EGD40634.1| LigA [Nocardioidaceae bacterium Broad-1] Length = 738 Score = 44.0 bits (103), Expect = 0.021, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 67/174 (38%), Gaps = 28/174 (16%) Query: 55 LIDSWPSW----PSRVVILVGPSGSGKSCLANIW---SDKSRSTRFSNIAKSLDSILIDT 107 LI++ W S + L GPSGSGK+ W ++ R + A ++ + Sbjct: 213 LIEALGRWLQNTESNLFFLTGPSGSGKTIEIRDWTASQEQVRYISLRDGAVDYGDLVGED 272 Query: 108 RKPVLLEDIDLLDFNDTQ-------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 R P++++D DL+ + + L + ++ + ++++ R L S Sbjct: 273 RSPIVIDDFDLISSSAEEHGVTRPDLSELRSAFGRGGRFVVISKRNLQTERDELAEQLRS 332 Query: 161 --RL-----KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER 207 RL ++A VV++ + + +R + + MER Sbjct: 333 PARLEDLGVESAVVVRVEPISPVEVRAL----SEERG---GDEKLRNLAAEMER 379 >gi|229035242|ref|ZP_04189177.1| Transposition helper protein, IS21 [Bacillus cereus AH1271] gi|228728054|gb|EEL79095.1| Transposition helper protein, IS21 [Bacillus cereus AH1271] Length = 253 Score = 44.0 bits (103), Expect = 0.021, Method: Composition-based stats. Identities = 22/140 (15%), Positives = 55/140 (39%), Gaps = 39/140 (27%) Query: 68 ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP----------------- 110 IL+GP G GK+ LA ++ ++ + ++ + S D ++ RK Sbjct: 102 ILLGPPGVGKTHLAVSFAIEAITQGYTALFLSADDLVAQCRKANDKGTLQRLVNRWSRPD 161 Query: 111 -VLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 ++++++ F++ F +++ ++ + +L T+ S L+ Sbjct: 162 VLIVDEVGYFPFDELTANVFFQVVSKRYEQGAMIL-TSN-------------KSYLEWGK 207 Query: 167 VVKISLPDDDFLEKVIVKMF 186 V DD ++ ++ Sbjct: 208 VFG----DDVLATAILDRLL 223 >gi|225559886|gb|EEH08168.1| DNA replication ATPase [Ajellomyces capsulatus G186AR] gi|225559936|gb|EEH08218.1| DNA replication ATPase [Ajellomyces capsulatus G186AR] Length = 547 Score = 44.0 bits (103), Expect = 0.021, Method: Composition-based stats. Identities = 44/265 (16%), Positives = 93/265 (35%), Gaps = 46/265 (17%) Query: 2 NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDL----LVHSAIEQAVRLID 57 N +ED S V + ++ +N + S DD+ LV + LI+ Sbjct: 106 NFSEEDSSLVVKRSRTSNALENAA---PLAERMRPR-SLDDVYGQELVGPS-GVLRGLIE 160 Query: 58 SWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN-------------IAKSLDSIL 104 +IL G +G+GK+ +A + + S +++ + + Sbjct: 161 QDR---VPSMILWGGAGTGKTTIARVIAKMVGSRFVEINSTNSGVAECKKLFSEAKNELS 217 Query: 105 IDTRKPVLL-EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 + RK ++ ++I + +F + L+ A T S+ V L SR Sbjct: 218 LSGRKTIIFCDEIHRFSKSQQDVFL---GPVESGQITLIGATTENPSFKVQNA-LLSR-- 271 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIF------IDKKLAAYIVQRMERSLVFAEKLVD 217 ++ D+ + ++ + +D +L Y+ + + L++ Sbjct: 272 -CRTFTLAKLTDEDIVSILNRALKVEGPNYSPSPLVDDELIKYLAAFADGDARTSLNLLE 330 Query: 218 -KMD---NLALSR---GMGITRSLA 235 MD ++R +TR+L Sbjct: 331 LAMDLSRREGMTREDLKKSLTRTLV 355 >gi|153953934|ref|YP_001394699.1| recombination factor protein RarA [Clostridium kluyveri DSM 555] gi|219854548|ref|YP_002471670.1| hypothetical protein CKR_1205 [Clostridium kluyveri NBRC 12016] gi|146346815|gb|EDK33351.1| Predicted helicase subunit of Holliday junction resolvase [Clostridium kluyveri DSM 555] gi|219568272|dbj|BAH06256.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 437 Score = 44.0 bits (103), Expect = 0.021, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 68/176 (38%), Gaps = 30/176 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI--------------LIDTRKPVL 112 VI GP G GK+ LA I ++ +++ + A + + + + Sbjct: 55 VIFYGPPGVGKTTLARIIANTTKANFYELSAVNSGTADVKKIIKEAENNLKFYSKKTILF 114 Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +++I + ++N++ + +L+ T + V L SR + + ++ Sbjct: 115 IDEIHRFNKAQQD--SVLNAV-EKGIIILIGVTTENPYFEVNNA-LLSR---SMIFRLEH 167 Query: 173 PDDDFLEKVIV------KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 ++ ++K + K F+ +I +D K+ Y S K ++ +D Sbjct: 168 LSENNVKKALKNAIESPKGFSYLKIEVDPKVFDYFALH---SGGDIRKALNALDMA 220 >gi|307825885|ref|ZP_07656100.1| AAA ATPase central domain protein [Methylobacter tundripaludum SV96] gi|307733004|gb|EFO03866.1| AAA ATPase central domain protein [Methylobacter tundripaludum SV96] Length = 435 Score = 44.0 bits (103), Expect = 0.021, Method: Composition-based stats. Identities = 41/197 (20%), Positives = 67/197 (34%), Gaps = 33/197 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I GP G+GK+ LA + + S + S + + I + + I L T Sbjct: 47 MIFWGPPGTGKTTLARLIAQHSDAEFMPISAVLSGVKEIRAAVAEA---KKIQLEQHRRT 103 Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N Q D ++ T + L SR A V + Sbjct: 104 ILFVDEVHRFNKSQQDAFLPHVEDGTVYFVGATTENPSFALNNA---LLSR---ARVYVL 157 Query: 171 SLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVD-KMDNL 222 + D L VI K D R + + + Q + L++ ++ Sbjct: 158 NALTADDLLAVIDKALTDKVRGLGGLAIEMADDIKQQFAQAADGDARRLLNLLEIAVELA 217 Query: 223 ALSRGMGITRSLAAEVL 239 A G + ++A EVL Sbjct: 218 AAKGGQAVNEAIAKEVL 234 >gi|242043694|ref|XP_002459718.1| hypothetical protein SORBIDRAFT_02g009310 [Sorghum bicolor] gi|241923095|gb|EER96239.1| hypothetical protein SORBIDRAFT_02g009310 [Sorghum bicolor] Length = 615 Score = 44.0 bits (103), Expect = 0.021, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 4/66 (6%) Query: 28 LFFSFPRCLGISRDDLLVHSAIEQAVR--LIDSWPSW--PSRVVILVGPSGSGKSCLANI 83 L + ++ +DL V ++ +A +ID + P V+ L+GPSG GK+ L + Sbjct: 62 LPEEASHEVFLTWEDLSVTASSGKAKAAVIIDKISGYARPGEVLALMGPSGCGKTTLLDA 121 Query: 84 WSDKSR 89 + + Sbjct: 122 LAGRLG 127 >gi|171689492|ref|XP_001909686.1| hypothetical protein [Podospora anserina S mat+] gi|170944708|emb|CAP70819.1| unnamed protein product [Podospora anserina S mat+] Length = 799 Score = 44.0 bits (103), Expect = 0.021, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 59/166 (35%), Gaps = 39/166 (23%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILIDT 107 V+L GPSG GK+ LA+ + + + A S+ D + Sbjct: 229 GNGVLLHGPSGCGKTTLAHAVAGSAGAAFIPISAPSIVGGTSGESEKNIRDVFDEAIRIA 288 Query: 108 RKPVLLEDIDLLDFNDTQ---------LFHIIN---SIHQY----DSSLLMTARTFPVSW 151 + ++ID + + I+N I + + +++ A P S Sbjct: 289 PCLIFFDEIDAIAGKRESANKGMEGRIVAEIMNGMDRIKRNTPLGKNVVVLAATNRPESL 348 Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 D R + + V + +P + E+++ + D + + + + Sbjct: 349 -----DPAIRRRFGSEVDMGMPSERAREQILRSLSRD--LNLAEDV 387 Score = 37.8 bits (87), Expect = 1.5, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 20/32 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P+ ++L GP G GK+ +A +++S++ S Sbjct: 526 PAAGILLWGPPGCGKTLVAKAVANESKANFIS 557 >gi|111021572|ref|YP_704544.1| ATPase [Rhodococcus jostii RHA1] gi|110821102|gb|ABG96386.1| possible ATPase [Rhodococcus jostii RHA1] Length = 420 Score = 44.0 bits (103), Expect = 0.021, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 53/164 (32%), Gaps = 34/164 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSR-----------STRFSNIAKSLDSILIDTRKP- 110 P R V+L GP G+GK+ A + + + + +A L + Sbjct: 195 PPRAVVLFGPPGTGKTTFARAIASRLGWPFVELFPSRLAAGENGLAAGLGEAFTSMGELE 254 Query: 111 ---VLLEDIDLLDFND----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 V +++++ + +L I + LL+ A + Sbjct: 255 HVVVFIDEVEEVAARRRPGSQSVGVVNELLKSIVHFRERGGRLLVCATNSVRALDDAF-- 312 Query: 158 LCSRLKAAT---VVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198 L+ V+ I PD + + + + Q+ + +A Sbjct: 313 ----LRHGRFDYVLPIGAPDAEARHALWERYLGNEQVDVSALVA 352 >gi|239814294|ref|YP_002943204.1| recombination factor protein RarA [Variovorax paradoxus S110] gi|239800871|gb|ACS17938.1| AAA ATPase central domain protein [Variovorax paradoxus S110] Length = 430 Score = 44.0 bits (103), Expect = 0.021, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 67/176 (38%), Gaps = 26/176 (14%) Query: 68 ILVGPSGSGKSCLANIWSDKSRSTRFS---------------NIAKSLDSILIDTRKPVL 112 IL GP G+GK+ +A + +D + S A + L R V Sbjct: 47 ILWGPPGTGKTTIARLMADAFDAQFLSISAVLGGVKDIRDAVERATAARDGLEQRRTIVF 106 Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 ++++ + + F + + A T S+ V L SR A V + Sbjct: 107 VDEVHRFNKSQQDAFLPH---VESGLFTFIGATTENPSFEVNSA-LLSR---AAVYVLQP 159 Query: 173 PDDDFLEKVIVKMFADRQIF-IDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 + L++++ K A + + I+ +V + A +L++ ++ LA++ Sbjct: 160 LTEADLKQIVAKAQAIQAVPGIEDTAIDRLVAYAD---GDARRLLNTLETLAVAAR 212 >gi|161076488|ref|NP_001097250.1| TER94, isoform D [Drosophila melanogaster] gi|157400264|gb|ABV53746.1| TER94, isoform D [Drosophila melanogaster] Length = 759 Score = 44.0 bits (103), Expect = 0.021, Method: Composition-based stats. Identities = 37/205 (18%), Positives = 79/205 (38%), Gaps = 60/205 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 192 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 251 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148 + + +++ID + QL +++ + + ++M A P Sbjct: 252 SPAIIFIDEIDAIAPKRDKTHGEVERRIVSQLLTLMDGMKKSSHLIVMAATNRPNSIDPA 311 Query: 149 --------VSWGVCLPDLCSRLKAATVVKIS-----LPDDDFLEKVIVKMFADRQIFIDK 195 + +PD RL+ V++I L DD LE++ A+ + Sbjct: 312 LRRFGRFDREIDIGIPDATGRLE---VLRIHTKNMKLHDDVDLEQI----AAESHGHVGA 364 Query: 196 KLAAYIVQRMERSLVFAEKLVDKMD 220 LA+ S +++ +KMD Sbjct: 365 DLASLC------SEAALQQIREKMD 383 Score = 40.5 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 465 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKA 521 >gi|289625405|ref|ZP_06458359.1| recombination factor protein RarA [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649312|ref|ZP_06480655.1| recombination factor protein RarA [Pseudomonas syringae pv. aesculi str. 2250] gi|298487530|ref|ZP_07005572.1| Holliday junction DNA helicase RuvB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157914|gb|EFH98992.1| Holliday junction DNA helicase RuvB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320323768|gb|EFW79852.1| recombination factor protein RarA [Pseudomonas syringae pv. glycinea str. B076] gi|320327909|gb|EFW83914.1| recombination factor protein RarA [Pseudomonas syringae pv. glycinea str. race 4] gi|330866858|gb|EGH01567.1| recombination factor protein RarA [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330889679|gb|EGH22340.1| recombination factor protein RarA [Pseudomonas syringae pv. mori str. 301020] gi|330987921|gb|EGH86024.1| recombination factor protein RarA [Pseudomonas syringae pv. lachrymans str. M301315] Length = 440 Score = 43.6 bits (102), Expect = 0.022, Method: Composition-based stats. Identities = 36/210 (17%), Positives = 76/210 (36%), Gaps = 32/210 (15%) Query: 57 DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 ++ +I GP G GK+ LA + + S + F ++ L + + + + Sbjct: 40 EALEQGALHSMIFWGPPGVGKTTLARLLAKVSDAH-FETVSAVLAGVKEIRQAVEVAKQQ 98 Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162 T LF H N Q D +L+ T L SR Sbjct: 99 AGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154 Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLV 216 A V + D+ L K++ + + RQ+ + + ++ + +++ Sbjct: 155 --ARVYVLKSLDEAALRKLVHRALTEERGLGKRQLTLSDEGFTILMAAAD---GDGRRML 209 Query: 217 DKMDNLA-LSR-GMGITRSLAAEVLKETQQ 244 + ++N + L+ G I L +L ++++ Sbjct: 210 NLLENASDLAEDGSEIDVELLQSLLGDSRR 239 >gi|255659708|ref|ZP_05405117.1| replication-associated recombination protein A [Mitsuokella multacida DSM 20544] gi|260848282|gb|EEX68289.1| replication-associated recombination protein A [Mitsuokella multacida DSM 20544] Length = 462 Score = 43.6 bits (102), Expect = 0.022, Method: Composition-based stats. Identities = 36/228 (15%), Positives = 82/228 (35%), Gaps = 45/228 (19%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST--- 91 + R L R+I+ +I GP G+GK+ LA + + + S Sbjct: 58 QEAVGRGHFL--------RRMIEMDQ---IPSIIFYGPPGTGKTTLAQMIAAMTDSAFEK 106 Query: 92 --RFSNIAKSLDSILIDTRKP---------VLLEDIDLLDFNDTQLFHIINSIHQYDSSL 140 S L I+ + + V +++I + + + + + Sbjct: 107 LNAVSAGISDLRRIVKEADEARRYYQRRTIVFIDEIHRFNKSQQDVLLPY---VEDGRLI 163 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD--RQI-----FI 193 L+ A T + V L SR++ +V++ D L +V+ + D R + + Sbjct: 164 LIGATTENPFFEVNHA-LLSRVR---IVRLYQLTDAQLVEVLRRALKDEERGLGGQHVEV 219 Query: 194 DKKLAAYIVQRMERSLVFAEKLVDKMDNLAL---SRGMGITRSLAAEV 238 ++ ++ + + A ++ ++ A + G +T + E+ Sbjct: 220 PDEV---LLAMAQIAGGDARMALNLLEGAAAMLPTTGGTVTLDMLEEI 264 >gi|325846375|ref|ZP_08169344.1| ATP-dependent metallopeptidase HflB [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481559|gb|EGC84599.1| ATP-dependent metallopeptidase HflB [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 678 Score = 43.6 bits (102), Expect = 0.022, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 46/140 (32%), Gaps = 45/140 (32%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ FS + + Sbjct: 209 VLLVGPPGTGKTLLAKAVAGEANVPFFSISGSEFVEMFVGMGASKVRDLFKQAKEKAPCI 268 Query: 111 VLLEDIDLL------------DFNDTQLFHIINS---IHQYDSSLLMTARTFPVSW---- 151 V +++ID + D + L ++N + +L++A P Sbjct: 269 VFIDEIDAIGKKRDVSGYSGNDEREQTLNQLLNEMDGFDATEGVVLLSATNRPEILDPAL 328 Query: 152 ----------GVCLPDLCSR 161 V LPDL R Sbjct: 329 TRPGRFDRRVQVELPDLKGR 348 >gi|302872103|ref|YP_003840739.1| AAA ATPase central domain protein [Caldicellulosiruptor obsidiansis OB47] gi|302574962|gb|ADL42753.1| AAA ATPase central domain protein [Caldicellulosiruptor obsidiansis OB47] Length = 441 Score = 43.6 bits (102), Expect = 0.022, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 63/139 (45%), Gaps = 25/139 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125 +IL GP G+GK+ +A++ ++ + T F I ++ + + ++E+ ++F+ T Sbjct: 55 IILYGPPGTGKTTIAHVIANATGKT-FKTINATIAGVNDIKK---IIEEA-KIEFSQTGK 109 Query: 126 ---LF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N + + +L+ A T + V L SR + V ++ Sbjct: 110 KTILFIDEIHRFNKLQQDALLPSVEEGIIILIGATTENPFYEVNKA-LVSR---SLVFEL 165 Query: 171 SLPDDDFLEKVIVKMFADR 189 ++ + K+I + +D+ Sbjct: 166 FPLKEEDILKIIERAISDK 184 >gi|256545930|ref|ZP_05473285.1| cell division protease FtsH family protein 3 [Anaerococcus vaginalis ATCC 51170] gi|256398352|gb|EEU11974.1| cell division protease FtsH family protein 3 [Anaerococcus vaginalis ATCC 51170] Length = 695 Score = 43.6 bits (102), Expect = 0.022, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 46/140 (32%), Gaps = 45/140 (32%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ FS + + Sbjct: 209 VLLVGPPGTGKTLLAKAVAGEANVPFFSISGSEFVEMFVGMGASKVRDLFKQAKEKAPCI 268 Query: 111 VLLEDIDLL------------DFNDTQLFHIINS---IHQYDSSLLMTARTFPVSW---- 151 V +++ID + D + L ++N + +L++A P Sbjct: 269 VFIDEIDAIGKKRDVSGYSGNDEREQTLNQLLNEMDGFDATEGVVLLSATNRPEILDPAL 328 Query: 152 ----------GVCLPDLCSR 161 V LPDL R Sbjct: 329 TRPGRFDRRVQVELPDLKGR 348 >gi|212697413|ref|ZP_03305541.1| hypothetical protein ANHYDRO_01983 [Anaerococcus hydrogenalis DSM 7454] gi|212675605|gb|EEB35212.1| hypothetical protein ANHYDRO_01983 [Anaerococcus hydrogenalis DSM 7454] Length = 677 Score = 43.6 bits (102), Expect = 0.022, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 46/140 (32%), Gaps = 45/140 (32%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ FS + + Sbjct: 209 VLLVGPPGTGKTLLAKAVAGEANVPFFSISGSEFVEMFVGMGASKVRDLFKQAKEKAPCI 268 Query: 111 VLLEDIDLL------------DFNDTQLFHIINS---IHQYDSSLLMTARTFPVSW---- 151 V +++ID + D + L ++N + +L++A P Sbjct: 269 VFIDEIDAIGKKRDVSGYSGNDEREQTLNQLLNEMDGFDATEGVVLLSATNRPEILDPAL 328 Query: 152 ----------GVCLPDLCSR 161 V LPDL R Sbjct: 329 TRPGRFDRRVQVELPDLKGR 348 >gi|146307409|ref|YP_001187874.1| recombination factor protein RarA [Pseudomonas mendocina ymp] gi|145575610|gb|ABP85142.1| Recombination protein MgsA [Pseudomonas mendocina ymp] Length = 440 Score = 43.6 bits (102), Expect = 0.022, Method: Composition-based stats. Identities = 37/210 (17%), Positives = 75/210 (35%), Gaps = 32/210 (15%) Query: 57 DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 ++ +I GP G GK+ LA + + + + F I+ L + + + + Sbjct: 40 EALEQGALHSMIFWGPPGVGKTTLARLLAKVTDAH-FETISAVLSGVKEIRQAVEVAQQH 98 Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162 T LF H N Q D +L+ T L SR Sbjct: 99 AAQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154 Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLV 216 A V + D+ + K++ + D R + + + ++ + +L+ Sbjct: 155 --ARVYVLKSLDEAAMRKLVNRALTDPKGLGERHLSLPDEAFQILLAAAD---GDGRRLL 209 Query: 217 DKMDNLA-LSR-GMGITRSLAAEVLKETQQ 244 + ++N A L+ G I L +L ++++ Sbjct: 210 NFLENAADLAEDGGEIGVELLQNLLGDSRR 239 >gi|115638829|ref|XP_799095.2| PREDICTED: similar to proteasome 26S ATPase subunit 3 variant [Strongylocentrotus purpuratus] gi|115963310|ref|XP_001191026.1| PREDICTED: similar to proteasome 26S ATPase subunit 3 variant [Strongylocentrotus purpuratus] Length = 278 Score = 43.6 bits (102), Expect = 0.022, Method: Composition-based stats. Identities = 28/201 (13%), Positives = 70/201 (34%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V+L GP G+GK+ LA + +++ST L + I ++ Sbjct: 58 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 117 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151 ++++D + + + ++N + + ++ A Sbjct: 118 LPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSSEEIKVIAATNRVDIL 177 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ P+++ +++ R++ + + + R Sbjct: 178 DPAL--LRSGRLD--RKIEFPAPNEEARARIMQ--IHSRKMNVGADVNFEELARCTDDFN 231 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ ++ G T Sbjct: 232 GAQCKAVCVEAGMIALRRGAT 252 >gi|147920402|ref|YP_685823.1| proteasome-activating nucleotidase [uncultured methanogenic archaeon RC-I] gi|110621219|emb|CAJ36497.1| 26S proteasome regulatory subunit (proteasome-activating nucleotidase) [uncultured methanogenic archaeon RC-I] Length = 410 Score = 43.6 bits (102), Expect = 0.022, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P R V+L GP G+GK+ LA + ++ +T L I ++ + Sbjct: 186 PPRGVLLYGPPGTGKTLLAKAVAHQANATFIRMSGSELVHKFIGEGAQLVRD 237 >gi|15920578|ref|NP_376247.1| hypothetical protein ST0376 [Sulfolobus tokodaii str. 7] gi|15621361|dbj|BAB65356.1| 747aa long hypothetical SAV protein [Sulfolobus tokodaii str. 7] Length = 747 Score = 43.6 bits (102), Expect = 0.022, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 62/163 (38%), Gaps = 33/163 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTR-- 108 P + ++L GP G+GK+ LA +++ ++ ++ + L I + + Sbjct: 212 PPKGILLYGPPGNGKTLLARALANEVGASFYTINGPEIMSKFYGESEQRLREIFEEAQKN 271 Query: 109 --KPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ I +++ A P + Sbjct: 272 APAIIFIDEIDSIAPKREEVTGEVEKRVVAQLLTLMDGIKGRGKVIVIGATNRPDA---V 328 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L + ++I PD ++++ R + + + + Sbjct: 329 DPALRRPGRFDREIEIRPPDTKGRKEILQVH--TRNMPLAEDV 369 Score = 37.8 bits (87), Expect = 1.4, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 19/32 (59%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + ++L GP G+GK+ LA + +S + + Sbjct: 487 PPKGILLFGPPGTGKTMLAKAVATESGANFIA 518 >gi|225568599|ref|ZP_03777624.1| hypothetical protein CLOHYLEM_04676 [Clostridium hylemonae DSM 15053] gi|225162527|gb|EEG75146.1| hypothetical protein CLOHYLEM_04676 [Clostridium hylemonae DSM 15053] Length = 438 Score = 43.6 bits (102), Expect = 0.022, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 58/158 (36%), Gaps = 30/158 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF---ND 123 +I GP G+GK+ LA + ++ + + + ++ +++ L Sbjct: 55 IIFYGPPGTGKTTLAKVIANTTSAE----FTQINATVAGKKDMEEVVKHAKELQGMYQKR 110 Query: 124 TQLF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 T LF H N + + +L+ A T + V L SR +++ ++ Sbjct: 111 TILFVDEIHRFNKGQQDYLLPFVEDGTLILIGATTENPYFEVNGA-LISR---SSIFELH 166 Query: 172 LPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIV 202 D + + +I + D Q I++ ++ Sbjct: 167 PLDKEDIRTLIRRALTDVEKGMGSYQAVIEEDALEFLA 204 >gi|213406089|ref|XP_002173816.1| chromosome transmission fidelity protein [Schizosaccharomyces japonicus yFS275] gi|212001863|gb|EEB07523.1| chromosome transmission fidelity protein [Schizosaccharomyces japonicus yFS275] Length = 825 Score = 43.6 bits (102), Expect = 0.022, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 21/39 (53%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI 103 RV++L GP GSGK+ LA++ + ++ A + Sbjct: 282 RVLLLTGPPGSGKTTLAHVIARQAGYNVVEVNASDDRTA 320 >gi|115476404|ref|NP_001061798.1| Os08g0413000 [Oryza sativa Japonica Group] gi|37806195|dbj|BAC99698.1| putative cell division cycle protein [Oryza sativa Japonica Group] gi|113623767|dbj|BAF23712.1| Os08g0413000 [Oryza sativa Japonica Group] gi|125603399|gb|EAZ42724.1| hypothetical protein OsJ_27296 [Oryza sativa Japonica Group] Length = 848 Score = 43.6 bits (102), Expect = 0.022, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 59/164 (35%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110 P + ++L GP G+GK+ LA + +S + + S + + Sbjct: 248 PPKGILLYGPPGTGKTLLARAIAAESGAHFVVVNGPEIMSGMPGESEANLRAVFAEADAA 307 Query: 111 ----VLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 V +++ID + + QL +++ + +++ A P S Sbjct: 308 APSIVFMDEIDSIAPSREKAHGEVERRVVSQLLTLMDGLRPRAQVIVIGATNRPNSLDPA 367 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L R + + I +PD+ L ++ + + + + + Sbjct: 368 LR----RFGRFDRELDIGVPDE--LGRLEILRIHTKNMPLSDDV 405 >gi|556560|dbj|BAA04614.1| rice homologue of Tat binding protein [Oryza sativa Japonica Group] Length = 429 Score = 43.6 bits (102), Expect = 0.022, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ +A + ++ +T L + I ++ + Sbjct: 209 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRD 260 >gi|327480897|gb|AEA84207.1| recombination factor protein RarA [Pseudomonas stutzeri DSM 4166] Length = 441 Score = 43.6 bits (102), Expect = 0.022, Method: Composition-based stats. Identities = 35/208 (16%), Positives = 74/208 (35%), Gaps = 28/208 (13%) Query: 57 DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 ++ ++ GP G GK+ LA + + S + F ++ L + + + + Sbjct: 40 EALEQGALHSMVFWGPPGVGKTTLARLLAKVSDAH-FETVSAVLAGVKEIRQAVEIAKQQ 98 Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162 T LF H N Q D +L+ T L SR Sbjct: 99 AAQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154 Query: 163 KAATVVKISLPDDDFLEKVIVKMF-ADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLV 216 A V + D+ L K++ + R + + ++ ++ + L+ Sbjct: 155 --ARVYVLKSLDEAALRKLVTRALTEHRGLGELHLTLPEESFQMLLAAADGDGRRLLNLL 212 Query: 217 DKMDNLALSRGMGITRSLAAEVLKETQQ 244 + +LA +G I+ L ++L ++++ Sbjct: 213 ENASDLA-EQGGVISTDLLQDLLGDSRR 239 >gi|307183660|gb|EFN70363.1| ATPase WRNIP1 [Camponotus floridanus] Length = 554 Score = 43.6 bits (102), Expect = 0.022, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 62/171 (36%), Gaps = 29/171 (16%) Query: 65 RVVILVGPSGSGKSCLANIWS-----DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 +IL GP G GK+ LAN+ + D SR R+ ++ ++ + + ++ + + Sbjct: 147 PNMILWGPPGCGKTSLANVIAHMCKNDTSRKLRYVKLSAAMAGV-QEVKEVISVAANHAK 205 Query: 120 DFNDTQLF----HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 T +F H N Q V LP + S P Sbjct: 206 FAQQTIVFMDEIHRFNKTQQD----------------VFLPHVESGTITLIGATTENPSF 249 Query: 176 DFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 ++ + R I + K A +V ++R+++ E ++ D L Sbjct: 250 SLNSALLSRC---RVIVLHKLSVANLVSILKRAVISLEGIIHMSDKSTLQS 297 >gi|148642414|ref|YP_001272927.1| proteasome-activating nucleotidase [Methanobrevibacter smithii ATCC 35061] gi|222446088|ref|ZP_03608603.1| hypothetical protein METSMIALI_01737 [Methanobrevibacter smithii DSM 2375] gi|288869526|ref|ZP_05974789.2| proteasome-activating nucleotidase [Methanobrevibacter smithii DSM 2374] gi|148551431|gb|ABQ86559.1| ATP-dependent 26S proteasome regulatory subunit, RPT1 [Methanobrevibacter smithii ATCC 35061] gi|222435653|gb|EEE42818.1| hypothetical protein METSMIALI_01737 [Methanobrevibacter smithii DSM 2375] gi|288861736|gb|EFC94034.1| proteasome-activating nucleotidase [Methanobrevibacter smithii DSM 2374] Length = 420 Score = 43.6 bits (102), Expect = 0.022, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 28/57 (49%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P + ++L GP G+GK+ LA ++++ +T +A I ++ E +L Sbjct: 194 PPKGILLYGPPGTGKTLLAKAVANETNATFIKIVASEFVKKYIGEGARLVREVFELA 250 >gi|167621681|ref|YP_001672189.1| transposase [Caulobacter sp. K31] gi|167351804|gb|ABZ74530.1| IstB domain protein ATP-binding protein [Caulobacter sp. K31] Length = 269 Score = 43.6 bits (102), Expect = 0.022, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 54/149 (36%), Gaps = 30/149 (20%) Query: 30 FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA-------- 81 F F V A A+ DSW + +++ GP G GKS LA Sbjct: 80 FDFDAVPT-------VSKAQVMALAAGDSWLDNGANLLM-FGPPGGGKSHLAAALGLALV 131 Query: 82 ----NIWSDKSR------STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ---LFH 128 ++ ++ T ++ +D ++L+D+ + + + LF Sbjct: 132 ENGWRVFFTRTTDLVQRLQTARRDLQLEAAIAKLDKYHLLILDDLAYVTKDQAETSVLFE 191 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD 157 +I S SLL+TA WG PD Sbjct: 192 LI-SARYERRSLLITANQPFGEWGRIFPD 219 >gi|23197864|gb|AAN15459.1| 26S proteasome AAA-ATPase subunit RPT5a [Arabidopsis thaliana] Length = 424 Score = 43.6 bits (102), Expect = 0.022, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ +A + ++ +T L + I ++ + Sbjct: 204 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRD 255 >gi|330801893|ref|XP_003288957.1| 26S proteasome ATPase 3 subunit [Dictyostelium purpureum] gi|325080988|gb|EGC34521.1| 26S proteasome ATPase 3 subunit [Dictyostelium purpureum] Length = 410 Score = 43.6 bits (102), Expect = 0.022, Method: Composition-based stats. Identities = 26/183 (14%), Positives = 62/183 (33%), Gaps = 38/183 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++ ST L + I ++ Sbjct: 189 PPKGVLMYGPPGTGKTLLARACAAQTNSTYLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 248 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151 ++++D + + ++N + + ++ A Sbjct: 249 GPTIIFIDELDAIGTKRFDSEISGDREVQRTMLELLNQLDGFSSDANIKVIAATNRIDIL 308 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ LP+++ ++ R++ + + + R Sbjct: 309 DPAL--LRSGRLD--RKIEFPLPNEEARAHILQ--IHSRKMNVHPDVNFEELARSTEDFN 362 Query: 211 FAE 213 A+ Sbjct: 363 GAQ 365 >gi|318040549|ref|ZP_07972505.1| recombination factor protein RarA/unknown domain fusion protein [Synechococcus sp. CB0101] Length = 745 Score = 43.6 bits (102), Expect = 0.022, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 62/170 (36%), Gaps = 24/170 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA I + +R+ S A + + ++ + L Sbjct: 70 LILYGPPGVGKTTLARIIAASTRAHFSSLNAVLAGVKDLRSEVDEARRRLEQHGLR-SFL 128 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H NS + + L+ A T + V L SR + + ++ Sbjct: 129 FIDEVHRFNSAQQDALLPWVENGTVTLIGATTENPFFEVNKA-LVSR---SRLFRLQPLQ 184 Query: 175 DDFLEKVIVKMFA-------DRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 L +++ + + DRQ+ I + AA++V ++ Sbjct: 185 PQHLHQLLQRALSDSERGYGDRQVVISNEAAAHLVDVAGGDARSLLNALE 234 >gi|284007597|emb|CBA73185.1| recombination factor protein RarA [Arsenophonus nasoniae] Length = 455 Score = 43.6 bits (102), Expect = 0.022, Method: Composition-based stats. Identities = 42/202 (20%), Positives = 69/202 (34%), Gaps = 36/202 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTR--FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP+G+GK+ LA I + + S + + I R+ + + + T Sbjct: 61 MILWGPAGTGKTTLAEIIGHYADAAIEKISAVTSGIKEI----RESIEIARQNRQLGRRT 116 Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N Q D ++ T L SR A V + Sbjct: 117 ILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNSA---LLSR---ARVYLL 170 Query: 171 SLPDDDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNL 222 ++ + V+ + AD Q I + I Q + A L++ M D Sbjct: 171 KSLANEEIAMVLQQAMADSQRGYGGQKIILPDDTRDMIAQLVNGDARRALNLLEMMVDMA 230 Query: 223 ALSRGMGITRSLAAEVLKETQQ 244 + R LA +LK+ Sbjct: 231 EIDDKD--QRILAVNLLKDVSG 250 >gi|157132226|ref|XP_001662523.1| spermatogenesis associated factor [Aedes aegypti] gi|108871250|gb|EAT35475.1| spermatogenesis associated factor [Aedes aegypti] Length = 720 Score = 43.6 bits (102), Expect = 0.022, Method: Composition-based stats. Identities = 36/205 (17%), Positives = 78/205 (38%), Gaps = 60/205 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP G+GK+ +A ++++ + F SN+ K+ + Sbjct: 234 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKK 293 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148 + + ++++D + QL +++ + + ++M A P Sbjct: 294 SPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNSIDPA 353 Query: 149 --------VSWGVCLPDLCSRLKAATVVKIS-----LPDDDFLEKVIVKMFADRQIFIDK 195 + +PD RL+ V++I L DD LE++ A+ + Sbjct: 354 LRRFGRFDREIDIGIPDATGRLE---VLRIHSKNMKLADDVDLEQI----AAESHGHVGA 406 Query: 196 KLAAYIVQRMERSLVFAEKLVDKMD 220 LA+ S +++ +KMD Sbjct: 407 DLASLC------SEAALQQIREKMD 425 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 507 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKA 563 >gi|306823257|ref|ZP_07456633.1| replication-associated recombination protein A [Bifidobacterium dentium ATCC 27679] gi|309801882|ref|ZP_07695997.1| recombination factor protein RarA [Bifidobacterium dentium JCVIHMP022] gi|304553889|gb|EFM41800.1| replication-associated recombination protein A [Bifidobacterium dentium ATCC 27679] gi|308221438|gb|EFO77735.1| recombination factor protein RarA [Bifidobacterium dentium JCVIHMP022] Length = 458 Score = 43.6 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 42/179 (23%), Positives = 68/179 (37%), Gaps = 35/179 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 +IL GP G GK+ LA I + +S ++ K + +L ++ E Sbjct: 62 IILFGPPGVGKTTLAYIVAKQSGRVFEELSAVTSGVKDVRDVLKRAHDRLVAE------G 115 Query: 122 NDTQLF--HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVK 169 +T LF + +LL + A T S+ V P L SR + VVK Sbjct: 116 RETVLFIDEVHRFSKSQQDALLPSVENRDVTFIAATTENPSFSVIKP-LLSR---SVVVK 171 Query: 170 ISLPDDDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + + D L +I + D R + I I+ RM + A K + ++ A Sbjct: 172 LESLEPDDLRTLINRAVEDERGLNNEVRIRDDAVDEII-RM--ASGDARKTLTILEAAA 227 >gi|302658374|ref|XP_003020891.1| hypothetical protein TRV_04967 [Trichophyton verrucosum HKI 0517] gi|291184761|gb|EFE40273.1| hypothetical protein TRV_04967 [Trichophyton verrucosum HKI 0517] Length = 551 Score = 43.6 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 34/214 (15%), Positives = 74/214 (34%), Gaps = 37/214 (17%) Query: 49 IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN------------- 95 LI+ +IL G +G+GK+ LA + + S Sbjct: 163 NGVLRGLIERDR---VPSMILWGSAGTGKTTLARVIASMVGSRFVEINSTSSGVAECKKL 219 Query: 96 IAKSLDSILIDTRKPVLL-EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 A++ + + + RK ++ ++I + +F + L+ A T S+ V Sbjct: 220 FAEAKNELSLTGRKTIIFCDEIHRFSKSQQDVFL---GPVESGQVTLIGATTENPSFKVQ 276 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ------IFIDKKLAAYIVQRMERS 208 L SR ++ ++ + ++ + +D +L Y+ + Sbjct: 277 NA-LLSR---CRTFTLAKLTEENICAILNRALRLEGPNYSPSALVDDELIKYLAAFADGD 332 Query: 209 LVFAEKLVD-KMD---NLALSR---GMGITRSLA 235 A L++ MD +++ +TR+L Sbjct: 333 ARTALNLLELAMDLSQRENMTKDELKKSLTRTLV 366 >gi|302498881|ref|XP_003011437.1| hypothetical protein ARB_02287 [Arthroderma benhamiae CBS 112371] gi|291174988|gb|EFE30797.1| hypothetical protein ARB_02287 [Arthroderma benhamiae CBS 112371] Length = 551 Score = 43.6 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 34/214 (15%), Positives = 74/214 (34%), Gaps = 37/214 (17%) Query: 49 IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN------------- 95 LI+ +IL G +G+GK+ LA + + S Sbjct: 163 NGVLRGLIERDR---VPSMILWGSAGTGKTTLARVIASMVGSRFVEINSTSSGVAECKKL 219 Query: 96 IAKSLDSILIDTRKPVLL-EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 A++ + + + RK ++ ++I + +F + L+ A T S+ V Sbjct: 220 FAEAKNELSLTGRKTIIFCDEIHRFSKSQQDVFL---GPVESGQVTLIGATTENPSFKVQ 276 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ------IFIDKKLAAYIVQRMERS 208 L SR ++ ++ + ++ + +D +L Y+ + Sbjct: 277 NA-LLSR---CRTFTLAKLTEENICAILNRALRVEGPNYSPSALVDDELIKYLAAFADGD 332 Query: 209 LVFAEKLVD-KMD---NLALSR---GMGITRSLA 235 A L++ MD +++ +TR+L Sbjct: 333 ARTALNLLELAMDLSQRENMTKDELKKSLTRTLV 366 >gi|258420199|ref|ZP_05683154.1| recombination protein MgsA [Staphylococcus aureus A9719] gi|257843910|gb|EEV68304.1| recombination protein MgsA [Staphylococcus aureus A9719] Length = 424 Score = 43.6 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 33/201 (16%), Positives = 72/201 (35%), Gaps = 40/201 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117 +I GP G GK+ +A S ++ + ++ ++ + + +LL++I Sbjct: 43 MIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIH 102 Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 L D L H+ N +L+ T + P + SR A + ++ Sbjct: 103 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 151 Query: 174 DDDFLEKVIVKM-------FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 +D+ + + + + Q ID+ Y + S ++ ++ LS Sbjct: 152 NDEDVRQALTRAIEYDENGLKTYQPKIDEDAMTYFSTQ---SQGDVRNALNALELAVLSA 208 Query: 227 G------MGITRSLAAEVLKE 241 +T A + L++ Sbjct: 209 DNDKDGYRHVTLQDAKDCLQK 229 >gi|15230005|ref|NP_187204.1| RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A); ATPase/ calmodulin binding [Arabidopsis thaliana] gi|297829080|ref|XP_002882422.1| regulatory particle triple-a 5A [Arabidopsis lyrata subsp. lyrata] gi|75337114|sp|Q9SEI2|PS6AA_ARATH RecName: Full=26S protease regulatory subunit 6A homolog A; AltName: Full=26S proteasome AAA-ATPase subunit RPT5a; AltName: Full=Proteasome 26S subunit 6A homolog A; AltName: Full=Regulatory particle triple-A ATPase subunit 5a; AltName: Full=Tat-binding protein 1 homolog A; Short=TBP-1 homolog A gi|6652886|gb|AAF22525.1|AF123394_1 26S proteasome AAA-ATPase subunit RPT5a [Arabidopsis thaliana] gi|7596759|gb|AAF64530.1| 26S proteasome AAA-ATPase subunit RPT5a [Arabidopsis thaliana] gi|17065258|gb|AAL32783.1| 26S proteasome AAA-ATPase subunit RPT5a [Arabidopsis thaliana] gi|297328262|gb|EFH58681.1| regulatory particle triple-a 5A [Arabidopsis lyrata subsp. lyrata] gi|332640733|gb|AEE74254.1| regulatory particle triple-A ATPase 5A [Arabidopsis thaliana] Length = 424 Score = 43.6 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ +A + ++ +T L + I ++ + Sbjct: 204 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRD 255 >gi|3024434|sp|O23894|PRS6A_BRACM RecName: Full=26S protease regulatory subunit 6A homolog; AltName: Full=Tat-binding protein homolog 1; Short=TBP-1 gi|2564337|dbj|BAA22951.1| Tat binding protein 1 [Brassica rapa] Length = 424 Score = 43.6 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ +A + ++ +T L + I ++ + Sbjct: 204 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRD 255 >gi|327398424|ref|YP_004339293.1| Holliday junction ATP-dependent DNA helicase ruvB [Hippea maritima DSM 10411] gi|327181053|gb|AEA33234.1| Holliday junction ATP-dependent DNA helicase ruvB [Hippea maritima DSM 10411] Length = 322 Score = 43.6 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 32/200 (16%), Positives = 69/200 (34%), Gaps = 31/200 (15%) Query: 70 VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHI 129 GP G GK+ LANI + + + + +++ + L + D+L ++ H Sbjct: 48 YGPPGLGKTTLANIVAKQMNANIITTSGPAVEKVGDIAAILTNLNEKDILFIDEI---HR 104 Query: 130 INSIHQ-------YDSSLLMTARTFP--VSWGVCLPD------------LCS--RLKAAT 166 +N + D L + P + + LP L S R + Sbjct: 105 LNRAVEETLYSALEDFKLDIIVGQGPGARTIRIDLPHFTLIGATTRIGLLTSPLRDRFGI 164 Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR---MERSLVFAEKLVDKMDNLA 223 ++++ L +++ + + + I++ A I +R R + V + Sbjct: 165 ILRLDFYSAKDLTEIVKRSASILGLDIEEDAANLIAERSRGTPRIANKLLRRVRDLSQ-- 222 Query: 224 LSRGMGITRSLAAEVLKETQ 243 + I A + L + Sbjct: 223 IESKDSIDVETAKKALSMLE 242 >gi|283455715|ref|YP_003360279.1| AAA family ATPase [Bifidobacterium dentium Bd1] gi|283102349|gb|ADB09455.1| AAA family ATPase [Bifidobacterium dentium Bd1] Length = 467 Score = 43.6 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 41/177 (23%), Positives = 68/177 (38%), Gaps = 31/177 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 +IL GP G GK+ LA I + +S ++ K + +L ++ E + + F Sbjct: 71 IILFGPPGVGKTTLAYIVAKQSGRVFEELSAVTSGVKDVRDVLKRAHDRLVAEGKETVLF 130 Query: 122 NDTQLFHIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 D + +LL + A T S+ V P L SR + VVK+ Sbjct: 131 IDE----VHRFSKSQQDALLPSVENRDVTFIAATTENPSFSVIKP-LLSR---SVVVKLE 182 Query: 172 LPDDDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + D L +I + D R + I I+ RM + A K + ++ A Sbjct: 183 SLEPDDLRTLINRAVEDERGLNNEVRIRDDAVDEII-RM--ASGDARKTLTILEAAA 236 >gi|259502247|ref|ZP_05745149.1| macrolide ABC superfamily ATP binding cassette transporter, ABC/permease protein [Lactobacillus antri DSM 16041] gi|259169865|gb|EEW54360.1| macrolide ABC superfamily ATP binding cassette transporter, ABC/permease protein [Lactobacillus antri DSM 16041] Length = 251 Score = 43.6 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 16/106 (15%) Query: 66 VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125 V ++G SG+GKS L NI + ++T S + D + D F Sbjct: 36 YVAIMGESGAGKSTLLNIIATLDKATNGSAVLNGQDLGELGKD--------DAARFRREH 87 Query: 126 L------FHIINSIHQYDS-SL-LMTARTFPVSWGVCLPDLCSRLK 163 L F+++NS+ D+ L L+ A+T P L L SRL+ Sbjct: 88 LGFVFQRFNLLNSLSNRDNIYLPLVLAKTKPAEMERRLKPLASRLR 133 >gi|206891135|ref|YP_002249330.1| ATP/GTP-binding domain protein [Thermodesulfovibrio yellowstonii DSM 11347] gi|206743073|gb|ACI22130.1| ATP/GTP-binding domain protein [Thermodesulfovibrio yellowstonii DSM 11347] Length = 414 Score = 43.6 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 72/175 (41%), Gaps = 22/175 (12%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G+GK+ LA I ++K+++ A +L+ I + + + + T L Sbjct: 54 LILYGPPGTGKTALARIIANKTKAYFQWLNATTLNIEEIRKQVSLAKQRLSR--GEKTIL 111 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H +N I + + +L+ A + + L SR + V ++ Sbjct: 112 FIDEIHRLNRISQDALLPDIEEGTIILIGATIENPFFYLNSA-LLSR---SHVFELKPLT 167 Query: 175 DDFLEKVIVKMFAD--RQI-FIDKKLAAYIVQRMERSLV-FAEKLVDKMDNLALS 225 + + ++ + D R + ++ + + + +S A K + ++ L+ Sbjct: 168 EQEIITILKRAIVDTERGFGSLKVEITSEALSHLAKSSDGDARKALSALEIAVLT 222 >gi|171743312|ref|ZP_02919119.1| hypothetical protein BIFDEN_02443 [Bifidobacterium dentium ATCC 27678] gi|171278926|gb|EDT46587.1| hypothetical protein BIFDEN_02443 [Bifidobacterium dentium ATCC 27678] Length = 458 Score = 43.6 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 41/177 (23%), Positives = 68/177 (38%), Gaps = 31/177 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 +IL GP G GK+ LA I + +S ++ K + +L ++ E + + F Sbjct: 62 IILFGPPGVGKTTLAYIVAKQSGRVFEELSAVTSGVKDVRDVLKRAHDRLVAEGKETVLF 121 Query: 122 NDTQLFHIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 D + +LL + A T S+ V P L SR + VVK+ Sbjct: 122 IDE----VHRFSKSQQDALLPSVENRDVTFIAATTENPSFSVIKP-LLSR---SVVVKLE 173 Query: 172 LPDDDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + D L +I + D R + I I+ RM + A K + ++ A Sbjct: 174 SLEPDDLRTLINRAVEDERGLNNEVRIRDDAVDEII-RM--ASGDARKTLTILEAAA 227 >gi|308807062|ref|XP_003080842.1| FTSH1_SYNY3 Cell division protein ftsH homolog 1 dbj|BAA10230.1| cell division prot (ISS) [Ostreococcus tauri] gi|116059303|emb|CAL55010.1| FTSH1_SYNY3 Cell division protein ftsH homolog 1 dbj|BAA10230.1| cell division prot (ISS) [Ostreococcus tauri] Length = 891 Score = 43.6 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 23/48 (47%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 V+L GP G GK+ LA + ++ +T FS A + + + + Sbjct: 443 VLLTGPPGCGKTLLARAVAGEAGATFFSLAASEFVEMFVGVGAARVRD 490 >gi|4574740|gb|AAD24194.1|AF134402_1 Tat-binding protein-1 [Drosophila melanogaster] Length = 431 Score = 43.6 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA + +++ST L + I ++ + Sbjct: 212 PPKGVILYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRD 263 >gi|115449297|ref|NP_001048428.1| Os02g0803700 [Oryza sativa Japonica Group] gi|109940121|sp|P46465|PRS6A_ORYSJ RecName: Full=26S protease regulatory subunit 6A homolog; AltName: Full=Tat-binding protein homolog 1; Short=TBP-1 gi|17297989|dbj|BAB78492.1| 26S proteasome regulatory particle triple-A ATPase subunit5a [Oryza sativa Japonica Group] gi|51090590|dbj|BAD36042.1| 26S proteasome regulatory particle triple-A ATPase subunit5a [Oryza sativa Japonica Group] gi|113537959|dbj|BAF10342.1| Os02g0803700 [Oryza sativa Japonica Group] gi|215678901|dbj|BAG96331.1| unnamed protein product [Oryza sativa Japonica Group] Length = 429 Score = 43.6 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ +A + ++ +T L + I ++ + Sbjct: 209 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRD 260 >gi|251792120|ref|YP_003006840.1| recombination factor protein RarA [Aggregatibacter aphrophilus NJ8700] gi|247533507|gb|ACS96753.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Aggregatibacter aphrophilus NJ8700] Length = 446 Score = 43.6 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 42/202 (20%), Positives = 81/202 (40%), Gaps = 33/202 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI-----------LIDTRKPVLL 113 +I GP G+GK+ LA I + + + R S + + I L R + + Sbjct: 53 MIFWGPPGTGKTTLAEIIAQRINAEVERISAVTSGIKEIRKAIEKAKQNKLAGLRTILFV 112 Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++ + + F HI + + + + A T S+ + L SR A V + Sbjct: 113 DEVHRFNKSQQDAFLPHI-----EDGTIIFIGATTENPSFELNNA-LLSR---ARVYILK 163 Query: 172 LPDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNLA 223 +E+V+ + D+ ++ + + L + + + + A ++ M D A Sbjct: 164 PLSTQEIERVLQQAIDDQENGLGKVRLDLQENLLSLLAEYVNGDARLALNCLEMMVDMAA 223 Query: 224 LSRGMGI-TRSLAAEVLKETQQ 244 S+ I R+L EVL E Q Sbjct: 224 ESKNGKILDRTLLTEVLGERQA 245 >gi|156098430|ref|XP_001615247.1| hypothetical protein [Plasmodium vivax SaI-1] gi|148804121|gb|EDL45520.1| hypothetical protein, conserved [Plasmodium vivax] Length = 677 Score = 43.6 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 69/173 (39%), Gaps = 37/173 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAK--------------SLDSILIDTRKPVL 112 +IL GP GSGKS L N+ +K+ + S ++ L + + Sbjct: 245 LILCGPPGSGKSSLVNVIKNKTNNLFISLFHLNNLNNELRKIYDQSVINYKLSKKKTILC 304 Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR----------- 161 ++DI+ L+ N + +I + + LL T P + L SR Sbjct: 305 IKDINRLNKNQQENLLLI--LKKGYFYLLATCLFNP--MNILNASLSSRCLYLYLNPYDK 360 Query: 162 LKAATVVK--ISLPD----DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 ++ A ++K I+ D D+ L ++ D ++ I + + ++ MER Sbjct: 361 IELALIIKRIINKLDIDIEDNALNIIMNHSCGDARVAI--NIIEFAIKNMERE 411 >gi|50304123|ref|XP_452011.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49641143|emb|CAH02404.1| KLLA0B10846p [Kluyveromyces lactis] Length = 430 Score = 43.6 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 53/140 (37%), Gaps = 41/140 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P+ ++L GP G+GKS LA + ++ ST FS + L S + + ++ Sbjct: 159 PTTGILLYGPPGTGKSYLAKAVATEANSTFFSISSSDLVSKWMGESERLVKQLFAMAREN 218 Query: 113 ------LEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTA---------- 144 ++++D L T+L +N + S +L+ Sbjct: 219 KPSIIFIDEVDALTGQRGEGESEASRRIKTELLVQMNGVGNDSSGVLVLGATNIPWQLDS 278 Query: 145 ---RTFPVSWGVCLPDLCSR 161 R F + LPDL SR Sbjct: 279 AIRRRFERRIYIPLPDLASR 298 >gi|6573151|gb|AAF17568.1|AF202034_1 endoplasmic reticulum membrane fusion protein [Drosophila melanogaster] Length = 799 Score = 43.6 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 37/205 (18%), Positives = 79/205 (38%), Gaps = 60/205 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 234 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 293 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148 + + +++ID + QL +++ + + ++M A P Sbjct: 294 SPAIIFIDEIDAIAPKRDKTHGEVERRIVSQLLTLMDGMKKSSHLIVMAATNRPNSIDPA 353 Query: 149 --------VSWGVCLPDLCSRLKAATVVKIS-----LPDDDFLEKVIVKMFADRQIFIDK 195 + +PD RL+ V++I L DD LE++ A+ + Sbjct: 354 LRRFGRFDREIDIGIPDATGRLE---VLRIHTKNMKLHDDVDLEQI----AAESHGHVGA 406 Query: 196 KLAAYIVQRMERSLVFAEKLVDKMD 220 LA+ S +++ +KMD Sbjct: 407 DLASLC------SEAALQQIREKMD 425 >gi|332295575|ref|YP_004437498.1| ATP-dependent metalloprotease FtsH [Thermodesulfobium narugense DSM 14796] gi|332178678|gb|AEE14367.1| ATP-dependent metalloprotease FtsH [Thermodesulfobium narugense DSM 14796] Length = 627 Score = 43.6 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 35/208 (16%), Positives = 73/208 (35%), Gaps = 47/208 (22%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110 R V+LVGP G GK+ LA + +++ FS + + Sbjct: 190 RGVLLVGPPGCGKTLLARAVAGEAKVPFFSISGSDFVEMFVGVGASRVRDLFEQAKNQSP 249 Query: 111 --VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGV 153 + +++ID + + L + ++ ++ ++M A P Sbjct: 250 CIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFEVDETIIVMAATNRPDVLDP 309 Query: 154 CLPDLCSRLKAA---TVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSL 209 L L+ V + PD ++++ A I++++ + +R Sbjct: 310 AL------LRPGRFDRHVTVDRPDLLGRKQILEVHLA--GKPIEEEVKVDILAKRTP-GF 360 Query: 210 VFAEKLVDKMDNLAL--SRGMGITRSLA 235 A L + ++ AL +R T S+A Sbjct: 361 AGA-DLANLVNEAALLAARKGKKTISMA 387 >gi|296271397|ref|YP_003654029.1| ATP-dependent metalloprotease FtsH [Thermobispora bispora DSM 43833] gi|296094184|gb|ADG90136.1| ATP-dependent metalloprotease FtsH [Thermobispora bispora DSM 43833] Length = 679 Score = 43.6 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 32/217 (14%), Positives = 65/217 (29%), Gaps = 49/217 (22%) Query: 67 VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110 V+L GP G+GK+ LA + ++ S + + + Sbjct: 204 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKANAPAI 263 Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + D + L + ++ +L+ A P L Sbjct: 264 IFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDVKGGVILIAATNRPDILDPAL 323 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211 L+ + I PD + + ++ R + I +R Sbjct: 324 ------LRPGRFDRQIVIDRPDLEGRKAILRVH--GRGKPFAPDVDLDVIARRTP-GFTG 374 Query: 212 AEKLVDKMDNLAL----SRGMGITRSLAAEVLKETQQ 244 A L + ++ AL IT + E + Sbjct: 375 A-DLANVINEAALLTARQDQKQITMATLEEAIDRVMA 410 >gi|221213645|ref|ZP_03586619.1| ATPase, AAA family [Burkholderia multivorans CGD1] gi|221166434|gb|EED98906.1| ATPase, AAA family [Burkholderia multivorans CGD1] Length = 436 Score = 43.6 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 58/170 (34%), Gaps = 22/170 (12%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA + + + A I E ++ + T L Sbjct: 50 MILWGPPGVGKTTLARLTALAFDCEFIALSAVLGGVKDIREAMDQAKETLNRTGRH-TIL 108 Query: 127 F----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N + + A T S+ V L SR A V + Sbjct: 109 FVDEIHRFNKGQQDALLPFVESGLVTFIGATTENPSFEVNSA-LLSR---AQVYVLKSLT 164 Query: 175 DDFLEKVIVK--MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 DD + +++ + A + D K ++ + A + ++ ++ Sbjct: 165 DDEMRQLLKRAQHIALDGLEFDDKAVDTLIGYAD---GDARRFLNLLEQA 211 >gi|12697589|dbj|BAB21595.1| Tat binding protein like protein [Brassica rapa] Length = 424 Score = 43.6 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ +A + ++ +T L + I ++ + Sbjct: 204 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRD 255 >gi|298368871|ref|ZP_06980189.1| magnesium chelatase, subunit ChlI family [Neisseria sp. oral taxon 014 str. F0314] gi|298282874|gb|EFI24361.1| magnesium chelatase, subunit ChlI family [Neisseria sp. oral taxon 014 str. F0314] Length = 435 Score = 43.6 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 62/153 (40%), Gaps = 23/153 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G GK+ LA I + + A S + D R+ + +I L T L Sbjct: 50 MLLWGPPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIREAIDKAEIALQQGRTTIL 107 Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 F H N Q D+ L L+T A T S+ V P L SR A V + Sbjct: 108 FVDEVHRFNKAQQ-DAFLPHVESGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQFL 162 Query: 174 DDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQ 203 D L+K+I K+ A R I+ +V Sbjct: 163 SSDDLKKLIAKVLALPEYRDFTIEADAQELLVN 195 >gi|312110107|ref|YP_003988423.1| MgsA AAA+ ATPase-like protein [Geobacillus sp. Y4.1MC1] gi|311215208|gb|ADP73812.1| MgsA AAA+ ATPase-like protein [Geobacillus sp. Y4.1MC1] Length = 431 Score = 43.6 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 21/141 (14%), Positives = 49/141 (34%), Gaps = 29/141 (20%) Query: 65 RVVILVGPSGSGKSCLANI---------WSDKSRSTRFSNIAKSLDSILIDTRKPVLLED 115 ++L G G GK+ LA+ ++ + ++ + + +++ + + +++ Sbjct: 43 PSLLLYGEPGVGKTSLAHAIAGTVQRDFFAINATASGKKEMEEVVETAKLTGNVILFIDE 102 Query: 116 IDLLDFNDTQLFHIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168 I H N Q + + T + P + SR + Sbjct: 103 I-----------HRFNKAQQDYLLPHIEQGLITLIGATTENPFHEVNPAIRSRCGQIKQL 151 Query: 169 KISLPDDDFLEKVIVKMFADR 189 K PDD + ++ + DR Sbjct: 152 KRLEPDDILI--LLRRALHDR 170 >gi|261402636|ref|YP_003246860.1| 26S proteasome subunit P45 family [Methanocaldococcus vulcanius M7] gi|261369629|gb|ACX72378.1| 26S proteasome subunit P45 family [Methanocaldococcus vulcanius M7] Length = 432 Score = 43.6 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + ++L GP G+GK+ LA + ++ +T + L I ++ + Sbjct: 205 PPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKD 256 >gi|291301352|ref|YP_003512630.1| AAA ATPase central domain-containing protein [Stackebrandtia nassauensis DSM 44728] gi|290570572|gb|ADD43537.1| AAA ATPase central domain protein [Stackebrandtia nassauensis DSM 44728] Length = 448 Score = 43.6 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 61/157 (38%), Gaps = 28/157 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS----NIAKSLDSILIDTRKP----------VL 112 VIL GP G GK+ +AN+ + + N +I+T + + Sbjct: 62 VILWGPPGCGKTTVANLVARATDRRYVPMSALNAGVKDVRAVIETARATRRRGGAPTVLF 121 Query: 113 LEDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 ++++ L + + + L+ A T + V P L SR ++ + Sbjct: 122 IDEVHRFTKTQQDALL----AAVEDRTITLLAATTENPYFSVVSP-LLSR---CVLLTLE 173 Query: 172 LPDDDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQ 203 +D + ++ + +D R + ++ + A ++V+ Sbjct: 174 PLTEDDIRALVDRALSDERGLGGEVALEPEAADHLVR 210 >gi|303278730|ref|XP_003058658.1| predicted protein [Micromonas pusilla CCMP1545] gi|226459818|gb|EEH57113.1| predicted protein [Micromonas pusilla CCMP1545] Length = 1119 Score = 43.6 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 23/48 (47%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 V+L GP G GK+ LA + +S +T FS A + + + + Sbjct: 658 VMLTGPPGCGKTLLARAVAGESGATFFSLTASEFVEMFVGVGAARVRD 705 >gi|24213879|ref|NP_711360.1| recombination factor protein RarA [Leptospira interrogans serovar Lai str. 56601] gi|45658352|ref|YP_002438.1| recombination factor protein RarA [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24194725|gb|AAN48378.1| recombination factor protein RarA [Leptospira interrogans serovar Lai str. 56601] gi|45601595|gb|AAS71075.1| ATPase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 423 Score = 43.6 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 50/128 (39%), Gaps = 18/128 (14%) Query: 67 VILVGPSGSGKSCLANIWSDK---------SRSTRFSNIAKSLDSILIDTRKPVLLEDID 117 +IL GP G+GKS LA I K + ST + I K L+ + + L++I Sbjct: 44 IILYGPPGTGKSTLAGILCRKWNLPFVEYNAVSTGVAEIKKLLERAEREGTILLFLDEIH 103 Query: 118 LL-DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 L + +L+ A T ++ + P L SR ++KI + Sbjct: 104 RFSASQQDSLL----KGVETGHLILIGATTENPAFRITRP-LLSR---CQILKIEPLSLE 155 Query: 177 FLEKVIVK 184 ++ + Sbjct: 156 EQSSLLER 163 >gi|544175|sp|P35892|DNAA_SPIAP RecName: Full=Chromosomal replication initiator protein DnaA gi|416273|dbj|BAA03631.1| DnaA protein [Spiroplasma apis] Length = 263 Score = 43.6 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 61/174 (35%), Gaps = 29/174 (16%) Query: 73 SGSGKSCLANIWSDKSRST---------RFSNIAKSLDSILIDTRKPV-----LLEDIDL 118 SG GK+ L + + +T S+ K + L D K + L ID+ Sbjct: 2 SGLGKTHLLKAIAHEIGNTKNKLVVKYYTSSDFRKEIVDSLQDGFKEIESTKEKLSKIDV 61 Query: 119 LDFNDTQLFHIINS-------------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 L +D Q + NS + + +++T+ FP L SR Sbjct: 62 LLIDDIQF--LANSGKTNEIFFNLFNFFIENNKQIVLTSDKFPEQLNGFDKRLVSRFSQG 119 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 VK+ PD ++ + + ++ YI + E +++K+ Sbjct: 120 LNVKVETPDIITAINIVDYKAKIVNLNLSEESKKYIASFFGSDVRKIEGIINKI 173 >gi|295399332|ref|ZP_06809314.1| AAA ATPase central domain protein [Geobacillus thermoglucosidasius C56-YS93] gi|294978798|gb|EFG54394.1| AAA ATPase central domain protein [Geobacillus thermoglucosidasius C56-YS93] Length = 431 Score = 43.6 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 21/141 (14%), Positives = 49/141 (34%), Gaps = 29/141 (20%) Query: 65 RVVILVGPSGSGKSCLANI---------WSDKSRSTRFSNIAKSLDSILIDTRKPVLLED 115 ++L G G GK+ LA+ ++ + ++ + + +++ + + +++ Sbjct: 43 PSLLLYGEPGVGKTSLAHAIAGTVQRDFFAINATASGKKEMEEVVETAKLTGNVILFIDE 102 Query: 116 IDLLDFNDTQLFHIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168 I H N Q + + T + P + SR + Sbjct: 103 I-----------HRFNKAQQDYLLPHIEQGLITLIGATTENPFHEVNPAIRSRCGQIKQL 151 Query: 169 KISLPDDDFLEKVIVKMFADR 189 K PDD + ++ + DR Sbjct: 152 KRLEPDDILI--LLRRALHDR 170 >gi|281411913|ref|YP_003345992.1| DNA polymerase III, subunits gamma and tau [Thermotoga naphthophila RKU-10] gi|281373016|gb|ADA66578.1| DNA polymerase III, subunits gamma and tau [Thermotoga naphthophila RKU-10] Length = 478 Score = 43.6 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 68/190 (35%), Gaps = 47/190 (24%) Query: 68 ILVGPSGSGKSCLANIWSDKS--------------RSTRFSNIAKSLDSILIDTRKPVLL 113 I GP G+GK+ LA I + R+ R + +D I +D + Sbjct: 40 IFAGPRGTGKTTLARILAKSLNCENRKGVEPCNSCRACREIDEGTFMDVIELDAASNRGI 99 Query: 114 EDI----DLLD------------FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCL-- 155 ++I D + ++ + + ++LL T P L Sbjct: 100 DEIRRIRDAVGYRPMEGKYKVYIIDEVHM-----LTKEAFNALLKTLEEPPSHVVFVLAT 154 Query: 156 -------PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 P + SR V + D+ +EK + ++ I ID++ ++I +R Sbjct: 155 TNLEKVPPTIISR---CQVFEFRNIPDELIEKRLQEVAEAEGIEIDREALSFIAKRASGG 211 Query: 209 LVFAEKLVDK 218 L A ++++ Sbjct: 212 LRDALTMLEQ 221 >gi|170288047|ref|YP_001738285.1| DNA polymerase III, subunits gamma and tau [Thermotoga sp. RQ2] gi|170175550|gb|ACB08602.1| DNA polymerase III, subunits gamma and tau [Thermotoga sp. RQ2] Length = 478 Score = 43.6 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 68/190 (35%), Gaps = 47/190 (24%) Query: 68 ILVGPSGSGKSCLANIWSDKS--------------RSTRFSNIAKSLDSILIDTRKPVLL 113 I GP G+GK+ LA I + R+ R + +D I +D + Sbjct: 40 IFAGPRGTGKTTLARILAKSLNCENRKGVEPCNSCRACREIDEGTFMDVIELDAASNRGI 99 Query: 114 EDI----DLLD------------FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCL-- 155 ++I D + ++ + + ++LL T P L Sbjct: 100 DEIRRIRDAVGYRPMEGKYKVYIIDEVHM-----LTKEAFNALLKTLEEPPSHVVFVLAT 154 Query: 156 -------PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 P + SR V + D+ +EK + ++ I ID++ ++I +R Sbjct: 155 TNLEKVPPTIISR---CQVFEFRNIPDELIEKRLQEVAEAEGIEIDREALSFIAKRASGG 211 Query: 209 LVFAEKLVDK 218 L A ++++ Sbjct: 212 LRDALTMLEQ 221 >gi|156937784|ref|YP_001435580.1| ATPase [Ignicoccus hospitalis KIN4/I] gi|156566768|gb|ABU82173.1| AAA ATPase, central domain protein [Ignicoccus hospitalis KIN4/I] Length = 366 Score = 43.6 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 44/124 (35%), Gaps = 33/124 (26%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSW-------PS-----WPSRVVILVGPSGSGKSCLA 81 +S DD++ +E A R I+ P WP R ++L GP G GK+ LA Sbjct: 90 TKPKVSFDDVV---GLEDAKRAIEEAIVFPAKRPDLFPLGWP-RGILLFGPPGCGKTLLA 145 Query: 82 NIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ---YDS 138 +++ + A ++ S + + + + N + Sbjct: 146 AAVANELDAEFIYVDAATIMSKWLGQA--------------EKNVASLFNKAREVASSGK 191 Query: 139 SLLM 142 +++ Sbjct: 192 PVII 195 >gi|148269390|ref|YP_001243850.1| DNA polymerase III, subunits gamma and tau [Thermotoga petrophila RKU-1] gi|147734934|gb|ABQ46274.1| DNA polymerase III, subunits gamma and tau [Thermotoga petrophila RKU-1] Length = 478 Score = 43.6 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 68/190 (35%), Gaps = 47/190 (24%) Query: 68 ILVGPSGSGKSCLANIWSDKS--------------RSTRFSNIAKSLDSILIDTRKPVLL 113 I GP G+GK+ LA I + R+ R + +D I +D + Sbjct: 40 IFAGPRGTGKTTLARILAKSLNCENRKGVEPCNSCRACREIDEGTFMDVIELDAASNRGI 99 Query: 114 EDI----DLLD------------FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCL-- 155 ++I D + ++ + + ++LL T P L Sbjct: 100 DEIRRIRDAVGYRPMEGKYKVYIIDEVHM-----LTKEAFNALLKTLEEPPSHVVFVLAT 154 Query: 156 -------PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 P + SR V + D+ +EK + ++ I ID++ ++I +R Sbjct: 155 TNLEKVPPTIISR---CQVFEFRNIPDELIEKRLQEVAEAEGIEIDREALSFIAKRASGG 211 Query: 209 LVFAEKLVDK 218 L A ++++ Sbjct: 212 LRDALTMLEQ 221 >gi|15643449|ref|NP_228495.1| DNA polymerase III, gamma and tau subunit [Thermotoga maritima MSB8] gi|4981209|gb|AAD35768.1|AE001741_1 DNA polymerase III, gamma and tau subunit [Thermotoga maritima MSB8] Length = 478 Score = 43.6 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 68/190 (35%), Gaps = 47/190 (24%) Query: 68 ILVGPSGSGKSCLANIWSDKS--------------RSTRFSNIAKSLDSILIDTRKPVLL 113 I GP G+GK+ LA I + R+ R + +D I +D + Sbjct: 40 IFAGPRGTGKTTLARILAKSLNCENRKGVEPCNSCRACREIDEGTFMDVIELDAASNRGI 99 Query: 114 EDI----DLLD------------FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCL-- 155 ++I D + ++ + + ++LL T P L Sbjct: 100 DEIRRIRDAVGYRPMEGKYKVYIIDEVHM-----LTKEAFNALLKTLEEPPSHVVFVLAT 154 Query: 156 -------PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 P + SR V + D+ +EK + ++ I ID++ ++I +R Sbjct: 155 TNLEKVPPTIISR---CQVFEFRNIPDELIEKRLQEVAEAEGIEIDREALSFIAKRASGG 211 Query: 209 LVFAEKLVDK 218 L A ++++ Sbjct: 212 LRDALTMLEQ 221 >gi|107022056|ref|YP_620383.1| recombination factor protein RarA [Burkholderia cenocepacia AU 1054] gi|116689000|ref|YP_834623.1| recombination factor protein RarA [Burkholderia cenocepacia HI2424] gi|105892245|gb|ABF75410.1| Recombination protein MgsA [Burkholderia cenocepacia AU 1054] gi|116647089|gb|ABK07730.1| Recombination protein MgsA [Burkholderia cenocepacia HI2424] Length = 436 Score = 43.6 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 59/170 (34%), Gaps = 22/170 (12%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA + + + A I + ++ + T L Sbjct: 50 MILWGPPGVGKTTLARLTALAFDCEFIALSAVLGGVKDIRESMEQAKDTLNRTGRH-TIL 108 Query: 127 F----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N + + A T S+ V L SR A V + + Sbjct: 109 FVDEIHRFNKGQQDALLPFVESGLVTFIGATTENPSFEVNSA-LLSR---AQVYVLKSLN 164 Query: 175 DDFLEKVIVKM--FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 DD + +++ + A + D K +V + A + ++ ++ Sbjct: 165 DDEMRQLLKRAQEIALDGLAFDDKAIDTLVGYAD---GDARRFLNLLEQA 211 >gi|313886300|ref|ZP_07820026.1| recombination factor protein RarA [Porphyromonas asaccharolytica PR426713P-I] gi|312924245|gb|EFR35028.1| recombination factor protein RarA [Porphyromonas asaccharolytica PR426713P-I] Length = 439 Score = 43.6 bits (102), Expect = 0.024, Method: Composition-based stats. Identities = 32/199 (16%), Positives = 66/199 (33%), Gaps = 43/199 (21%) Query: 26 EQLFFSFPRCLGISRDDLLVH-----SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80 EQ+ + + V A +++ +IL GP G GK+ L Sbjct: 4 EQIPLAERMRPKTLEE--YVGQSHLVGANAPLRVMLER---GHIPSMILWGPPGVGKTTL 58 Query: 81 ANIWSD--KSRSTRFSNIAKSLDSILIDTRKP----------------VLLEDIDLLDFN 122 A + S + R S + + + ++ + +++I + Sbjct: 59 ARLLSQMMQCRCYSLSAVGSGVADVRKTLQEAKEAQSGLFSQHQGRPILFIDEIHRFSKS 118 Query: 123 DT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 L + + L+ A T S+ V P L SR V + + L ++ Sbjct: 119 QQDSLL----AAVEQGVVTLIGATTENPSFQVIRP-LLSR---CQVFVLKPLEPSDLSQL 170 Query: 182 IVK------MFADRQIFID 194 I + +F+ Q+ ++ Sbjct: 171 IDRVFSTDPLFSRYQVTLE 189 >gi|229815425|ref|ZP_04445757.1| hypothetical protein COLINT_02473 [Collinsella intestinalis DSM 13280] gi|229808958|gb|EEP44728.1| hypothetical protein COLINT_02473 [Collinsella intestinalis DSM 13280] Length = 635 Score = 43.6 bits (102), Expect = 0.024, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 54/166 (32%), Gaps = 51/166 (30%) Query: 47 SAIEQAVRLIDSWPSWPS------RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 ++++ V +++ + R +LVGP G+GK+ LA + ++ FS Sbjct: 195 ESLKEVVDFLENPQRYEEIGAKLPRGALLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEF 254 Query: 101 DSILIDTRKP----------------VLLEDIDLLD---------FNDT------QLFHI 129 + + V +++ID + ND QL Sbjct: 255 VEMFVGRGAAKVRDLFKQAKEKAPCIVFIDEIDTIGKKRDGGGFSGNDEREQTLNQLLTE 314 Query: 130 INSIHQYDSSLLMTARTFPVSW--------------GVCLPDLCSR 161 ++ +++ A P S V LPDL R Sbjct: 315 MDGFDNQKGIVVLAATNRPDSLDAALLRPGRFDRRVPVELPDLAGR 360 >gi|326915142|ref|XP_003203879.1| PREDICTED: nuclear valosin-containing protein-like [Meleagris gallopavo] Length = 874 Score = 43.6 bits (102), Expect = 0.024, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 58/168 (34%), Gaps = 42/168 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P R +L GP G GK+ LA + + A + D +++ Sbjct: 321 PPRGFLLHGPPGCGKTLLAQAIAGELELPMLKVAATEMVSGVSGESEQKLRELFDQAVLN 380 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHI---INSIHQYDSSLLMTARTFPVSW 151 + +++ID + QL +N++ L++ A P S Sbjct: 381 APCVLFIDEIDAITPKREVASKDMERRIVAQLLTCLDDLNNVAATAQVLVIGATNRPDSL 440 Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKK 196 L +A + + +PD+ EK++ + R++ + + Sbjct: 441 DPALR------RAGRFDREICLGIPDEAAREKILQTLC--RKLKLPES 480 >gi|308070341|ref|YP_003871946.1| hypothetical protein PPE_03591 [Paenibacillus polymyxa E681] gi|305859620|gb|ADM71408.1| Conserved hypothetical protein [Paenibacillus polymyxa E681] Length = 436 Score = 43.6 bits (102), Expect = 0.024, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 59/163 (36%), Gaps = 38/163 (23%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 ++L GP G GK+ LA+I S ++ R + + S+ + E ID N + Sbjct: 54 ILLYGPPGCGKTTLAHIISQHTQGDFVRLNAVEASVKDVR---------EVIDRAQTNKS 104 Query: 125 Q------LF----HIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 LF H NS Q +++ T + L SR +T+ Sbjct: 105 MYGKKTILFLDEVHRFNSSRQDALLPAVEKGTIVFIGATTENPFHYVNGALMSR---STL 161 Query: 168 VKISLPDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQ 203 ++ + + + +D Q+ +D+ A+I Sbjct: 162 FQLEALTQEHSLAAMRRALSDADKGLGYMQLQVDEAALAHIAS 204 >gi|300934544|ref|ZP_07149800.1| recombination factor protein RarA [Corynebacterium resistens DSM 45100] Length = 545 Score = 43.6 bits (102), Expect = 0.024, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 65/179 (36%), Gaps = 30/179 (16%) Query: 64 SRVVILVGPSGSGKS------------CLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV 111 VIL GP G+GK+ + + S + + LI R V Sbjct: 91 DSSVILYGPPGTGKTTIASLISAASDRHFEALSALNSGVKEVRAVIDNARQRLIHGRATV 150 Query: 112 L-LEDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 L ++++ L S + + LL+ A T S+ V P L SR + +V+ Sbjct: 151 LFIDEVHRFSKTQQDALL----SAVENRTVLLVAATTENPSFSVVAP-LLSR---SLLVQ 202 Query: 170 ISLPDDDFLEKVIVKMFAD-RQ----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + D+ + V+ + D R + + + +V S A + + ++ A Sbjct: 203 LHSLTDEDIATVLTRAVEDPRGFGSKVRLSSDALSQLVA---LSAGDARRSLTYLEAAA 258 >gi|291540574|emb|CBL13685.1| ATP-dependent metalloprotease FtsH [Roseburia intestinalis XB6B4] Length = 524 Score = 43.6 bits (102), Expect = 0.024, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 60/189 (31%), Gaps = 49/189 (25%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + +S FS + + Sbjct: 121 VLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEMFVGMGASKVRDLFGQAKEKAPCI 180 Query: 111 VLLEDIDLL--------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW----- 151 V +++ID + ND QL ++ + +++ A P S Sbjct: 181 VFIDEIDAIGKKRDGQMGGNDEREQTLNQLLTEMDGFEGNNGVIILAATNRPESLDPALT 240 Query: 152 ---------GVCLPDLCSRLKAATVV---KISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199 V LPDL R +A V KI DD L + + + Sbjct: 241 RPGRFDRRVPVELPDLAGR-EAILKVHAKKIKASDDVDLHTIARMASGASGAEL-ANIIN 298 Query: 200 YIVQRMERS 208 R RS Sbjct: 299 EAALRAVRS 307 >gi|291534756|emb|CBL07868.1| ATP-dependent metalloprotease FtsH [Roseburia intestinalis M50/1] Length = 604 Score = 43.6 bits (102), Expect = 0.024, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 60/189 (31%), Gaps = 49/189 (25%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + +S FS + + Sbjct: 201 VLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEMFVGMGASKVRDLFGQAKEKAPCI 260 Query: 111 VLLEDIDLL--------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW----- 151 V +++ID + ND QL ++ + +++ A P S Sbjct: 261 VFIDEIDAIGKKRDGQMGGNDEREQTLNQLLTEMDGFEGNNGVIILAATNRPESLDPALT 320 Query: 152 ---------GVCLPDLCSRLKAATVV---KISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199 V LPDL R +A V KI DD L + + + Sbjct: 321 RPGRFDRRVPVELPDLAGR-EAILKVHAKKIKASDDVDLHTIARMASGASGAEL-ANIIN 378 Query: 200 YIVQRMERS 208 R RS Sbjct: 379 EAALRAVRS 387 >gi|291526623|emb|CBK92209.1| ATP-dependent metalloprotease FtsH [Eubacterium rectale M104/1] Length = 604 Score = 43.6 bits (102), Expect = 0.024, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 60/189 (31%), Gaps = 49/189 (25%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + +S FS + + Sbjct: 201 VLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEMFVGMGASKVRDLFRQAKEKAPCI 260 Query: 111 VLLEDIDLL--------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW----- 151 V +++ID + ND QL ++ + +++ A P S Sbjct: 261 VFIDEIDAIGKKRDGQMGGNDEREQTLNQLLTEMDGFEGNNGVIILAATNRPESLDPALT 320 Query: 152 ---------GVCLPDLCSRLKAATVV---KISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199 V LPDL R +A V KI DD L + + + Sbjct: 321 RPGRFDRRVPVELPDLAGR-EAILKVHAKKIKASDDVDLHTIARMASGASGAEL-ANIIN 378 Query: 200 YIVQRMERS 208 R RS Sbjct: 379 EAALRAVRS 387 >gi|238922414|ref|YP_002935928.1| microtubule-severing ATPase [Eubacterium eligens ATCC 27750] gi|238874086|gb|ACR73794.1| microtubule-severing ATPase [Eubacterium eligens ATCC 27750] Length = 604 Score = 43.6 bits (102), Expect = 0.024, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 60/189 (31%), Gaps = 49/189 (25%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + +S FS + + Sbjct: 201 VLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEMFVGMGASKVRDLFRQAKEKAPCI 260 Query: 111 VLLEDIDLL--------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW----- 151 V +++ID + ND QL ++ + +++ A P S Sbjct: 261 VFIDEIDAIGKKRDGQMGGNDEREQTLNQLLTEMDGFEGNNGVIILAATNRPESLDPALT 320 Query: 152 ---------GVCLPDLCSRLKAATVV---KISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199 V LPDL R +A V KI DD L + + + Sbjct: 321 RPGRFDRRVPVELPDLAGR-EAILKVHAKKIKASDDVDLHTIARMASGASGAEL-ANIIN 378 Query: 200 YIVQRMERS 208 R RS Sbjct: 379 EAALRAVRS 387 >gi|240146417|ref|ZP_04745018.1| cell division protein FtsH [Roseburia intestinalis L1-82] gi|257201465|gb|EEU99749.1| cell division protein FtsH [Roseburia intestinalis L1-82] Length = 604 Score = 43.6 bits (102), Expect = 0.024, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 60/189 (31%), Gaps = 49/189 (25%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + +S FS + + Sbjct: 201 VLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEMFVGMGASKVRDLFGQAKEKAPCI 260 Query: 111 VLLEDIDLL--------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW----- 151 V +++ID + ND QL ++ + +++ A P S Sbjct: 261 VFIDEIDAIGKKRDGQMGGNDEREQTLNQLLTEMDGFEGNNGVIILAATNRPESLDPALT 320 Query: 152 ---------GVCLPDLCSRLKAATVV---KISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199 V LPDL R +A V KI DD L + + + Sbjct: 321 RPGRFDRRVPVELPDLAGR-EAILKVHAKKIKASDDVDLHTIARMASGASGAEL-ANIIN 378 Query: 200 YIVQRMERS 208 R RS Sbjct: 379 EAALRAVRS 387 >gi|225377197|ref|ZP_03754418.1| hypothetical protein ROSEINA2194_02843 [Roseburia inulinivorans DSM 16841] gi|225210957|gb|EEG93311.1| hypothetical protein ROSEINA2194_02843 [Roseburia inulinivorans DSM 16841] Length = 604 Score = 43.6 bits (102), Expect = 0.024, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 60/189 (31%), Gaps = 49/189 (25%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + +S FS + + Sbjct: 201 VLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEMFVGMGASKVRDLFGQAKEKAPCI 260 Query: 111 VLLEDIDLL--------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW----- 151 V +++ID + ND QL ++ + +++ A P S Sbjct: 261 VFIDEIDAIGKKRDGQMGGNDEREQTLNQLLTEMDGFEGNNGVIILAATNRPESLDPALT 320 Query: 152 ---------GVCLPDLCSRLKAATVV---KISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199 V LPDL R +A V KI DD L + + + Sbjct: 321 RPGRFDRRVPVELPDLAGR-EAILKVHAKKIKASDDVDLHTIARMASGASGAEL-ANIIN 378 Query: 200 YIVQRMERS 208 R RS Sbjct: 379 EAALRAVRS 387 >gi|226324935|ref|ZP_03800453.1| hypothetical protein COPCOM_02727 [Coprococcus comes ATCC 27758] gi|225206283|gb|EEG88637.1| hypothetical protein COPCOM_02727 [Coprococcus comes ATCC 27758] Length = 587 Score = 43.6 bits (102), Expect = 0.024, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 60/189 (31%), Gaps = 49/189 (25%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + +S FS + + Sbjct: 184 VLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEMFVGMGASKVRDLFKQAKEKAPCI 243 Query: 111 VLLEDIDLL--------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW----- 151 V +++ID + ND QL ++ + +++ A P S Sbjct: 244 VFIDEIDAIGKKRDGQMGGNDEREQTLNQLLTEMDGFEGNNGVIILAATNRPESLDPALT 303 Query: 152 ---------GVCLPDLCSRLKAATVV---KISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199 V LPDL R +A V KI DD L + + + Sbjct: 304 RPGRFDRRVPVELPDLAGR-EAILKVHAKKIKASDDVDLHTIARMASGASGAEL-ANIIN 361 Query: 200 YIVQRMERS 208 R RS Sbjct: 362 EAALRAVRS 370 >gi|218134340|ref|ZP_03463144.1| hypothetical protein BACPEC_02233 [Bacteroides pectinophilus ATCC 43243] gi|217989725|gb|EEC55736.1| hypothetical protein BACPEC_02233 [Bacteroides pectinophilus ATCC 43243] Length = 476 Score = 43.6 bits (102), Expect = 0.024, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 60/189 (31%), Gaps = 49/189 (25%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + +S FS + + Sbjct: 73 VLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEMFVGMGASKVRDLFGQAKEKAPCI 132 Query: 111 VLLEDIDLL--------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW----- 151 V +++ID + ND QL ++ + +++ A P S Sbjct: 133 VFIDEIDAIGKKRDGQMGGNDEREQTLNQLLTEMDGFEGNNGVIILAATNRPESLDPALT 192 Query: 152 ---------GVCLPDLCSRLKAATVV---KISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199 V LPDL R +A V KI DD L + + + Sbjct: 193 RPGRFDRRVPVELPDLAGR-EAILKVHAKKIKASDDVDLHTIARMASGASGAEL-ANIIN 250 Query: 200 YIVQRMERS 208 R RS Sbjct: 251 EAALRAVRS 259 >gi|154484850|ref|ZP_02027298.1| hypothetical protein EUBVEN_02568 [Eubacterium ventriosum ATCC 27560] gi|149733803|gb|EDM49922.1| hypothetical protein EUBVEN_02568 [Eubacterium ventriosum ATCC 27560] Length = 604 Score = 43.6 bits (102), Expect = 0.024, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 60/189 (31%), Gaps = 49/189 (25%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + +S FS + + Sbjct: 201 VLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEMFVGMGASKVRDLFGQAKEKAPCI 260 Query: 111 VLLEDIDLL--------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW----- 151 V +++ID + ND QL ++ + +++ A P S Sbjct: 261 VFIDEIDAIGKKRDGQMGGNDEREQTLNQLLTEMDGFEGNNGVIILAATNRPESLDPALT 320 Query: 152 ---------GVCLPDLCSRLKAATVV---KISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199 V LPDL R +A V KI DD L + + + Sbjct: 321 RPGRFDRRVPVELPDLAGR-EAILKVHAKKIKASDDVDLHTIARMASGASGAEL-ANIIN 378 Query: 200 YIVQRMERS 208 R RS Sbjct: 379 EAALRAVRS 387 >gi|116207434|ref|XP_001229526.1| hypothetical protein CHGG_03010 [Chaetomium globosum CBS 148.51] gi|88183607|gb|EAQ91075.1| hypothetical protein CHGG_03010 [Chaetomium globosum CBS 148.51] Length = 821 Score = 43.6 bits (102), Expect = 0.024, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 64/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R V+L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 257 PPRGVLLYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 316 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + + ++M A P S Sbjct: 317 SPAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSID-- 374 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + V I +PD +++ + + + + Sbjct: 375 -PALR-RFGRFDREVDIGIPDPTGRLEILQ--IHTKNMKLGDDV 414 >gi|304314884|ref|YP_003850031.1| proteasome-activating nucleotidase [Methanothermobacter marburgensis str. Marburg] gi|302588343|gb|ADL58718.1| predicted proteasome-activating nucleotidase [Methanothermobacter marburgensis str. Marburg] Length = 410 Score = 43.6 bits (102), Expect = 0.024, Method: Composition-based stats. Identities = 25/177 (14%), Positives = 64/177 (36%), Gaps = 42/177 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V+L GP G+GK+ LA + ++ +T +A I ++ Sbjct: 184 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIKIVASEFVRKYIGEGARLVRGVFELAKEK 243 Query: 113 ------LEDIDLLD---------FNDT------QLFHIINSIHQYDSSLLMTARTFPVSW 151 +++ID + + QL ++ + ++ A P Sbjct: 244 APSIIFIDEIDAVAAKRLKSSTSGDREVQRTLMQLLAELDGFESRGNVGIVAATNRPDIL 303 Query: 152 GVCLPDLCSRLKAA---TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 L L+ +++ LP++D +++ + + + +++ ++ R+ Sbjct: 304 DPAL------LRPGRFDRFIEVPLPNEDGRREILKIHTS--GMALAEEVDIELLARI 352 >gi|301789397|ref|XP_002930115.1| PREDICTED: LOW QUALITY PROTEIN: ATPase WRNIP1-like [Ailuropoda melanoleuca] Length = 618 Score = 43.6 bits (102), Expect = 0.024, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 16/83 (19%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA+I ++ S+ + S + + + D+ N+ Sbjct: 215 PSLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 269 Query: 125 QLF-----------HIINSIHQY 136 F H N Q Sbjct: 270 SFFKRKTILFIDEIHRFNKSQQD 292 >gi|289620390|emb|CBI53248.1| unnamed protein product [Sordaria macrospora] Length = 891 Score = 43.6 bits (102), Expect = 0.024, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 58/166 (34%), Gaps = 39/166 (23%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILIDT 107 V+L GPSG GK+ LA+ + + A S+ D + Sbjct: 257 DNGVLLHGPSGCGKTTLAHAVAGSVGAAFIPVSAPSIVGGTSGESEKNIREVFDEAIRLA 316 Query: 108 RKPVLLEDIDLLDFNDTQ---------LFHIIN---SIHQY----DSSLLMTARTFPVSW 151 V +++ID + + I+N I Q + +++ A P Sbjct: 317 PCLVFIDEIDAIAGKRESANKGMEGRIVAEIMNGMDRIKQQTPLGKNVVVLAATNRPDFL 376 Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P + R A + + +P++ E ++ + D + +D + Sbjct: 377 D---PAIRRRFSA--EIDMGMPNERAREHILKSLSRD--LNVDADV 415 Score = 37.4 bits (86), Expect = 2.0, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 20/32 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P+ ++L GP G GK+ +A +++S++ S Sbjct: 582 PAAGILLWGPPGCGKTLVAKAVANESKANFIS 613 >gi|118576833|ref|YP_876576.1| replication factor C/ATPase involved in DNA replication [Cenarchaeum symbiosum A] gi|118195354|gb|ABK78272.1| replication factor C/ATPase involved in DNA replication [Cenarchaeum symbiosum A] Length = 386 Score = 43.6 bits (102), Expect = 0.024, Method: Composition-based stats. Identities = 25/171 (14%), Positives = 58/171 (33%), Gaps = 33/171 (19%) Query: 48 AIEQAVRLIDSWPS-WPSRV--VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS----- 99 E+A + W S W V+LVGP G+GK+ +AN+ + S A Sbjct: 17 GNEEARAALSGWFSKWKKGTKPVLLVGPPGTGKTTVANLAAKAHGYDVISLNASDARSKS 76 Query: 100 ---------LDSILIDTRKPVLLEDIDLLDFNDTQLF----HIINSIHQYDSSLLMTA-- 144 L ++ + + ++++D + F +I + + +++ A Sbjct: 77 RINEVLSPVLGNVSVLGSPMIFIDEVDGIHGRSD--FGGAEALIKILKEPAVPIVLAANS 134 Query: 145 RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195 P + K + ++ + + K+ ++ + Sbjct: 135 DASPKMKSIK--------KTSKLIPFRPLPPRLMRVYLRKVLSEEGASLSP 177 >gi|157126628|ref|XP_001654680.1| spermatogenesis associated factor [Aedes aegypti] gi|108873203|gb|EAT37428.1| spermatogenesis associated factor [Aedes aegypti] Length = 803 Score = 43.6 bits (102), Expect = 0.024, Method: Composition-based stats. Identities = 36/205 (17%), Positives = 78/205 (38%), Gaps = 60/205 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP G+GK+ +A ++++ + F SN+ K+ + Sbjct: 234 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKK 293 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148 + + ++++D + QL +++ + + ++M A P Sbjct: 294 SPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNSIDPA 353 Query: 149 --------VSWGVCLPDLCSRLKAATVVKIS-----LPDDDFLEKVIVKMFADRQIFIDK 195 + +PD RL+ V++I L DD LE++ A+ + Sbjct: 354 LRRFGRFDREIDIGIPDATGRLE---VLRIHSKNMKLADDVDLEQI----AAESHGHVGA 406 Query: 196 KLAAYIVQRMERSLVFAEKLVDKMD 220 LA+ S +++ +KMD Sbjct: 407 DLASLC------SEAALQQIREKMD 425 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 507 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKA 563 >gi|32400784|gb|AAP80624.1|AF475102_1 tat binding protein [Triticum aestivum] Length = 187 Score = 43.6 bits (102), Expect = 0.024, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 27/57 (47%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P + V+L GP G+GK+ +A + ++ +T L + I ++ + +L Sbjct: 25 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFELA 81 >gi|2342675|gb|AAB70397.1| Similar to probable Mg-dependent ATPase (pir|S56671). ESTs gb|T46782,gb|AA04798 come from this gene [Arabidopsis thaliana] Length = 419 Score = 43.6 bits (102), Expect = 0.024, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ +A + ++ +T L + I ++ + Sbjct: 199 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRD 250 >gi|312793248|ref|YP_004026171.1| AAA ATPase central domain-containing protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180388|gb|ADQ40558.1| AAA ATPase central domain protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 441 Score = 43.6 bits (102), Expect = 0.024, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 63/139 (45%), Gaps = 25/139 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125 +IL GP G+GK+ +A++ ++ + T F I ++ + + ++E+ ++F+ T Sbjct: 55 IILYGPPGTGKTTIAHVIANATGKT-FKTINATIAGVNDIKK---IIEEA-KIEFSQTGR 109 Query: 126 ---LF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N + + +L+ A T + V L SR + V ++ Sbjct: 110 KTILFIDEIHRFNKLQQDALLPSVEEGIIILIGATTENPFYEVNKA-LVSR---SLVFEL 165 Query: 171 SLPDDDFLEKVIVKMFADR 189 ++ + K+I + +D+ Sbjct: 166 FPLKEEDILKIIERAISDK 184 >gi|212702534|ref|ZP_03310662.1| hypothetical protein DESPIG_00553 [Desulfovibrio piger ATCC 29098] gi|212673975|gb|EEB34458.1| hypothetical protein DESPIG_00553 [Desulfovibrio piger ATCC 29098] Length = 408 Score = 43.6 bits (102), Expect = 0.024, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 68/191 (35%), Gaps = 12/191 (6%) Query: 31 SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS--DKS 88 P + DL + + A RL + ++L GP G GKS LA + + K Sbjct: 6 PLPERMRPDDPDLFLGQS-HLASRLKSLMAAERLPSLLLFGPPGCGKSTLALLLARSRKR 64 Query: 89 RSTRFSNIAKSLDSIL--IDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTART 146 R S L + ++ + ++L+++ F + + + +LL T Sbjct: 65 PYLRLSAPEAGLQHLRRSLNGIEILVLDELHRFSKAQQDFF--LPLVESGELTLLATTTE 122 Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206 P + V L SRL V+++ L ++ + + + ++ I Sbjct: 123 NPS-FSVTRQ-LLSRL---HVLRLRPLGRSELMELARRGAEQTGVTLGDEVLDIITAAAH 177 Query: 207 RSLVFAEKLVD 217 LV+ Sbjct: 178 GDARTLLNLVE 188 >gi|71733913|ref|YP_275261.1| recombination factor protein RarA [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554466|gb|AAZ33677.1| ATPase, AAA family [Pseudomonas syringae pv. phaseolicola 1448A] Length = 440 Score = 43.6 bits (102), Expect = 0.024, Method: Composition-based stats. Identities = 36/210 (17%), Positives = 76/210 (36%), Gaps = 32/210 (15%) Query: 57 DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 ++ +I GP G GK+ LA + + S + F ++ L + + + + Sbjct: 40 EALEQGALHSMIFWGPPGVGKTTLARLLAKVSDAH-FETVSAVLAGVKEIRQAVEVAKQQ 98 Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162 T LF H N Q D +L+ T L SR Sbjct: 99 AGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154 Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLV 216 A V + D+ L K++ + + RQ+ + + ++ + +++ Sbjct: 155 --ARVYVLKSLDEAALRKLVHRALTEERGLGKRQLTLSDEGFTILMAAAD---GDGRRML 209 Query: 217 DKMDNLA-LSR-GMGITRSLAAEVLKETQQ 244 + ++N + L+ G I L +L ++++ Sbjct: 210 NLLENASDLAEDGSEIDVELLQSLLGDSRR 239 >gi|312127885|ref|YP_003992759.1| AAA ATPase central domain-containing protein [Caldicellulosiruptor hydrothermalis 108] gi|311777904|gb|ADQ07390.1| AAA ATPase central domain protein [Caldicellulosiruptor hydrothermalis 108] Length = 441 Score = 43.6 bits (102), Expect = 0.024, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 63/139 (45%), Gaps = 25/139 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125 +IL GP G+GK+ +A++ ++ + T F I ++ + + ++E+ ++F+ T Sbjct: 55 IILYGPPGTGKTTIAHVIANATGKT-FKTINATIAGVNDIKK---IIEEA-KIEFSQTGR 109 Query: 126 ---LF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N + + +L+ A T + V L SR + V ++ Sbjct: 110 KTILFIDEIHRFNKLQQDALLPSVEEGIIILIGATTENPFYEVNKA-LVSR---SLVFEL 165 Query: 171 SLPDDDFLEKVIVKMFADR 189 ++ + K+I + +D+ Sbjct: 166 FPLKEEDILKIIERAISDK 184 >gi|308235719|ref|ZP_07666456.1| recombination factor protein RarA [Gardnerella vaginalis ATCC 14018] gi|311114730|ref|YP_003985951.1| replication-associated recombination protein A [Gardnerella vaginalis ATCC 14019] gi|310946224|gb|ADP38928.1| replication-associated recombination protein A [Gardnerella vaginalis ATCC 14019] Length = 457 Score = 43.6 bits (102), Expect = 0.024, Method: Composition-based stats. Identities = 45/209 (21%), Positives = 80/209 (38%), Gaps = 46/209 (22%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 V+L GP G GK+ LA I + +S ++ K + ++L + ++ Sbjct: 62 VVLFGPPGVGKTTLAYIVARQSGRVFEELSAVTSGVKDVRAVLDRAHERLV------SKG 115 Query: 122 NDTQLF--HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVK 169 +T LF + +LL + A T S+ + P L SR + VVK Sbjct: 116 QETVLFIDEVHRFSKSQQDALLPSVENRDVTFIGATTENPSFSIIKP-LLSR---SVVVK 171 Query: 170 ISLPDDDFLEKVIVKMFA-----DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL-- 222 + + L +I + + + Q+ ID+ I+ R+ S A K + ++ Sbjct: 172 LESLSVEDLHTLIERAISSENGLNNQLKIDEDAIDSII-RL--SGGDARKTLTILEAAAG 228 Query: 223 ------ALSRGMG---ITRSLAAEVLKET 242 AL G IT + + V+ T Sbjct: 229 AVTGDVALQHGKNKPVITADIVSNVMDTT 257 >gi|226491766|ref|NP_001142386.1| hypothetical protein LOC100274559 [Zea mays] gi|194690812|gb|ACF79490.1| unknown [Zea mays] gi|194703712|gb|ACF85940.1| unknown [Zea mays] Length = 430 Score = 43.6 bits (102), Expect = 0.024, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ +A + ++ +T L + I ++ + Sbjct: 210 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRD 261 >gi|15217431|ref|NP_172384.1| RPT5B (26S proteasome AAA-ATPase subunit RPT5B); ATPase/ calmodulin binding [Arabidopsis thaliana] gi|288558845|sp|O04019|PS6AB_ARATH RecName: Full=26S protease regulatory subunit 6A homolog B; AltName: Full=26S proteasome AAA-ATPase subunit RPT5b; AltName: Full=Proteasome 26S subunit 6A homolog B; AltName: Full=Regulatory particle triple-A ATPase subunit 5b; AltName: Full=Tat-binding protein 1 homolog B; Short=TBP-1 homolog B gi|15724310|gb|AAL06548.1|AF412095_1 At1g09100/F7G19_2 [Arabidopsis thaliana] gi|15215788|gb|AAK91439.1| At1g09100/F7G19_2 [Arabidopsis thaliana] gi|21700797|gb|AAM70522.1| At1g09100/F7G19_2 [Arabidopsis thaliana] gi|215433748|gb|ACJ66733.1| 26S proteasome AAA-ATPase subunit RPT5b [Arabidopsis thaliana] gi|332190275|gb|AEE28396.1| 26S proteasome regulatory subunit T5 [Arabidopsis thaliana] Length = 423 Score = 43.6 bits (102), Expect = 0.024, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ +A + ++ +T L + I ++ + Sbjct: 203 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRD 254 >gi|313679564|ref|YP_004057303.1| holliday junction DNA helicase subunit ruvb [Oceanithermus profundus DSM 14977] gi|313152279|gb|ADR36130.1| Holliday junction DNA helicase subunit RuvB [Oceanithermus profundus DSM 14977] Length = 328 Score = 43.6 bits (102), Expect = 0.025, Method: Composition-based stats. Identities = 27/206 (13%), Positives = 77/206 (37%), Gaps = 30/206 (14%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLL 113 P ++L GP G GK+ LA++ + + + ++ + ++ + + Sbjct: 38 PLDHLLLFGPPGLGKTTLAHVIAAELGVNIRVTSGPAIEKPGDLAAILTNSLEEGDVLFI 97 Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD---------------- 157 ++I L + H+ ++ + +++ + + LP Sbjct: 98 DEIHRLSRTAEE--HLYPAMEDFKIDIVIGQGPAARTIRLDLPRFTLIGATTRPGLISGP 155 Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 L SR V + ++ L + + + I ++++ A I +R ++ A++L Sbjct: 156 LRSRF--GIVEHLEFYSEEELARGVERDARLMGIAVEREAALEIGRRSRGTMRVAKRLFR 213 Query: 218 KM-DNLALSRGMGITRSLAAEVLKET 242 ++ D ++ ++ + + L Sbjct: 214 RVRDYAEVAGEEVVSLARTRQALDAL 239 >gi|302528372|ref|ZP_07280714.1| transcriptional regulator [Streptomyces sp. AA4] gi|302437267|gb|EFL09083.1| transcriptional regulator [Streptomyces sp. AA4] Length = 1716 Score = 43.6 bits (102), Expect = 0.025, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 60/171 (35%), Gaps = 34/171 (19%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLD--------------------- 101 R V+L GP+G G++ LA +D A + Sbjct: 855 AGRAVLLCGPAGCGRTTLARRATDAFPGPVLQATAAEWESGSAFAVLRQLFPDLPTDGGP 914 Query: 102 -------SILIDTRKPVLLEDIDLLDFND-TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 + + ++++D L D + L ++ +++L+TA T Sbjct: 915 LSVAGRIAAELVPGTLLVVDDAQLADVDSMRTLSSLLRHHPAVRATVLLTAATGDSRARA 974 Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 + +L +R+ + V++ D + ++ + R I + +A + + Sbjct: 975 DVQELLARM-SGDEVRVPPLD----AAEVSELASARGIALHPTMAERLCRH 1020 >gi|260946507|ref|XP_002617551.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720] gi|238849405|gb|EEQ38869.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720] Length = 425 Score = 43.6 bits (102), Expect = 0.025, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + ++ GP G+GK+ LA + +S +T A L + I ++ + Sbjct: 204 PPKGALMYGPPGTGKTLLARACAAQSGATFLKLAAPQLVQMFIGDGAKLVRD 255 >gi|162312486|ref|XP_001713083.1| 19S proteasome regulatory subunit Rpt5 (predicted) [Schizosaccharomyces pombe 972h-] gi|3024433|sp|O14126|PRS6A_SCHPO RecName: Full=26S protease regulatory subunit 6A gi|6681372|dbj|BAA88693.1| regulatory subunit of 26S proteasome [Schizosaccharomyces pombe] gi|159883985|emb|CAB16588.2| 19S proteasome regulatory subunit Rpt5 (predicted) [Schizosaccharomyces pombe] Length = 438 Score = 43.6 bits (102), Expect = 0.025, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 60/167 (35%), Gaps = 38/167 (22%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + ++ GP G+GK+ LA + +S +T A L + I ++ Sbjct: 218 PPKGCLMFGPPGTGKTLLARACAAQSNATFLKLAAPQLVQMFIGDGAKLVRDAFALAKEK 277 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151 ++++D + + + ++N + D ++ A + Sbjct: 278 SPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDTL 337 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L L S RL + LP+++ ++ R++ ID + Sbjct: 338 DPAL--LRSGRLDRKL--EFPLPNEEARVGIL--RIHSRKMAIDDDI 378 >gi|332029720|gb|EGI69599.1| Spastin [Acromyrmex echinatior] Length = 717 Score = 43.6 bits (102), Expect = 0.025, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 29/50 (58%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + + +T FS A SL S + + ++ Sbjct: 475 PARGLLLFGPPGNGKTLLARAVATQCNATFFSISAASLTSKYVGEGEKLV 524 >gi|293399822|ref|ZP_06643968.1| ATPase, AAA family [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306222|gb|EFE47465.1| ATPase, AAA family [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 419 Score = 43.6 bits (102), Expect = 0.025, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 72/185 (38%), Gaps = 22/185 (11%) Query: 67 VILVGPSGSGKSCLANIWSDKSR-----STRFSNIAKSLDSILIDTRKP----VLLEDID 117 +I GP G+GK+ LA + +++ + K L+ I + R ++++++ Sbjct: 42 MIFYGPPGTGKTTLAMVLANELELPYRLFNAVTGNKKELEQIFAEARLYPGLILIVDEVH 101 Query: 118 LLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD- 174 L+ + L H+ N ++ + T P + SR V +S D Sbjct: 102 RLNKDKQDLLLPHVEN------GNITLIGATTSNPLHAINPAIRSRCHLFEVKALSQTDI 155 Query: 175 -DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233 + + + + +I I++ I + S ++ ++ A++ I+++ Sbjct: 156 EEALCKALQSPKGLNNEITIEEDALHIISRH---SNGDIRYALNILEICAIASDGCISKA 212 Query: 234 LAAEV 238 L + Sbjct: 213 LVEQF 217 >gi|226469026|emb|CAX69992.1| proteasome (prosome, macropain) 26S subunit, ATPase, 3 [Schistosoma japonicum] gi|226484784|emb|CAX74301.1| proteasome (prosome, macropain) 26S subunit, ATPase, 3 [Schistosoma japonicum] Length = 428 Score = 43.6 bits (102), Expect = 0.025, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 70/184 (38%), Gaps = 40/184 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V+L GP G+GK+ LA + +++ST L + I ++ Sbjct: 208 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEK 267 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSLLMTARTFPVSWG 152 ++++D + + + ++N + Q + + + A T Sbjct: 268 APAIIFIDELDAIGTKRFNSEKAGDREVQRTMLELLNQLDGFQPNHDIKVIAAT--NRVD 325 Query: 153 VCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209 + P L L++ V ++ P+++ +++ R++ +DK + + R Sbjct: 326 ILDPAL---LRSGRVDRKIEFPAPNEEARARIMQ--IHSRKMNVDKDVNFEELARCTDDF 380 Query: 210 VFAE 213 A+ Sbjct: 381 NGAQ 384 >gi|168061595|ref|XP_001782773.1| predicted protein [Physcomitrella patens subsp. patens] gi|162665746|gb|EDQ52420.1| predicted protein [Physcomitrella patens subsp. patens] Length = 422 Score = 43.6 bits (102), Expect = 0.025, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ +A + ++ +T L + I ++ + Sbjct: 202 PPKGVLLYGPPGTGKTLMARACAAQTNATYLKLAGPQLVQMFIGDGAKLVRD 253 >gi|88602329|ref|YP_502507.1| proteasome-activating nucleotidase [Methanospirillum hungatei JF-1] gi|121731703|sp|Q2FQ56|PAN_METHJ RecName: Full=Proteasome-activating nucleotidase; Short=PAN; AltName: Full=Proteasomal ATPase; AltName: Full=Proteasome regulatory ATPase; AltName: Full=Proteasome regulatory particle gi|88187791|gb|ABD40788.1| Proteasome-activating nucleotidase [Methanospirillum hungatei JF-1] Length = 412 Score = 43.6 bits (102), Expect = 0.025, Method: Composition-based stats. Identities = 25/166 (15%), Positives = 52/166 (31%), Gaps = 37/166 (22%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + V+L GP G+GK+ LA + ++ + + L I ++ E Sbjct: 186 PPKGVLLYGPPGTGKTLLAKAVAHETHAIFLHTVGSELVQKYIGEGARLVRE-------- 237 Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 + + + S++ + SR +A T D + ++ Sbjct: 238 ------LFDLAKEKAPSIVFIDEIDAIG--------ASRTEAMTSG-----DREVQRTLM 278 Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228 + A + ++ A +D +D L G Sbjct: 279 QLLAAMDGFEPRGDV----------KIIGATNRIDILDAALLRPGR 314 >gi|74003977|ref|XP_535865.2| PREDICTED: similar to Werner helicase interacting protein isoform 1 [Canis familiaris] Length = 427 Score = 43.6 bits (102), Expect = 0.025, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 16/83 (19%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA+I ++ S+ + S + + + D+ N+ Sbjct: 42 PSLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 96 Query: 125 QLF-----------HIINSIHQY 136 F H N Q Sbjct: 97 SFFKRKTILFIDEIHRFNKSQQD 119 >gi|19073988|ref|NP_584594.1| DNA REPLICATION FACTOR (ACTIVATOR 1) 36 kDa SUBUNIT [Encephalitozoon cuniculi GB-M1] gi|19068630|emb|CAD25098.1| DNA REPLICATION FACTOR (ACTIVATOR 1) 36 kDa SUBUNIT [Encephalitozoon cuniculi GB-M1] Length = 283 Score = 43.6 bits (102), Expect = 0.025, Method: Composition-based stats. Identities = 28/163 (17%), Positives = 62/163 (38%), Gaps = 24/163 (14%) Query: 65 RVVILVGPSGSGKSCLANIWSDK--------SRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 ++L GP G+GK+ A++ + + R + + + K V+L++ Sbjct: 34 PNLLLYGPPGTGKTTFAHLLASQKLELNASDERGISVIREKIKVYASTLGKDKTVILDEC 93 Query: 117 DLLDFNDTQLFHIINSIHQY--DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 + L + H + + + ++ + G P L SRL VK + + Sbjct: 94 ENLTSDAQ---HCLRRVIEDSVNTRFIFITNYPSKIIG---P-LRSRL---VSVKFTPTE 143 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 K++ + + + DK+L I++ L A ++ Sbjct: 144 ----SKILENIGSKEGLGYDKELYHRILKLCGNDLRRAINVLQ 182 >gi|117928540|ref|YP_873091.1| recombination factor protein RarA [Acidothermus cellulolyticus 11B] gi|117649003|gb|ABK53105.1| Recombination protein MgsA [Acidothermus cellulolyticus 11B] Length = 500 Score = 43.6 bits (102), Expect = 0.025, Method: Composition-based stats. Identities = 42/184 (22%), Positives = 68/184 (36%), Gaps = 20/184 (10%) Query: 54 RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL 113 RL+D + + ++L GP GSGK+ LA + S S RF ++ + Sbjct: 62 RLLDDPQA-TAPSLLLWGPPGSGKTTLAYLVSHASG-RRFVELSAVAAGVKDVRDVIAAA 119 Query: 114 EDIDLLDFNDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSR 161 T LF H + + L+ A T S+ V P L SR Sbjct: 120 RRERAASGRGTVLFLDEVHRFSKAQQDSLLPAVENGIVTLIGATTENPSFSVIGP-LLSR 178 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFAD-RQIFIDKKLAAYIVQRMER-SLVFAEKLVDKM 219 A ++ + DD L VI + D R + L +R+ R + A + + + Sbjct: 179 ---AVLLTLQPLSDDELRTVIRRAVVDPRGLAGRHTLTPAAEERLIRLAGGDARRALTYL 235 Query: 220 DNLA 223 + A Sbjct: 236 EAAA 239 >gi|85712404|ref|ZP_01043454.1| Uncharacterized ATPase related to the helicase subunit of the Holliday junction resolvase [Idiomarina baltica OS145] gi|85693847|gb|EAQ31795.1| Uncharacterized ATPase related to the helicase subunit of the Holliday junction resolvase [Idiomarina baltica OS145] Length = 451 Score = 43.6 bits (102), Expect = 0.025, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 68/181 (37%), Gaps = 37/181 (20%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLDFND- 123 +IL GP G+GK+ LA + + + +T R S I + I +++ Sbjct: 54 MILWGPPGTGKTTLAELMATSADATVSRLSAITSGVKEIRQ------AIDEAKQRAKQQG 107 Query: 124 --TQLF----HIINSIHQ-------YDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVK 169 T LF H N Q D +++ T G L + L SR A V + Sbjct: 108 RRTLLFVDEVHRFNKSQQDAFLPFIEDGTVIFVGATTENP-GFELNNALLSR---ARVYR 163 Query: 170 ISLPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 + + L ++ + D R I + + ++ + + A ++++ ++ Sbjct: 164 LESIKAEDLRALLQRTLQDPERGLGARHIRLTPEAEDRLL---DLAGGDARRMLNYLEVA 220 Query: 223 A 223 A Sbjct: 221 A 221 >gi|313904153|ref|ZP_07837532.1| AAA ATPase central domain protein [Eubacterium cellulosolvens 6] gi|313470955|gb|EFR66278.1| AAA ATPase central domain protein [Eubacterium cellulosolvens 6] Length = 488 Score = 43.6 bits (102), Expect = 0.025, Method: Composition-based stats. Identities = 22/172 (12%), Positives = 62/172 (36%), Gaps = 28/172 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTR--------------KPVL 112 +I GP G+GK+ LA + ++ + + A + ++ + Sbjct: 55 IIFYGPPGTGKTTLARVIANTTSAEFAQMNATTSGKKDMEAAVKEAQNRRGMYGKKTILF 114 Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +++I + + + +L+ A T + V L SR + V ++ Sbjct: 115 IDEIHRFNKGQQDFLLPY---VEDGTVILIGATTENPYFEVNTA-LISR---SVVFELKP 167 Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVD 217 + + + K++++ D + + ++ + A ++ A ++ Sbjct: 168 LEKEDVRKLLLRAVEDPVKGLGSYHAVLEPEAADFLADMAGGDARAALNAIE 219 >gi|296413658|ref|XP_002836526.1| hypothetical protein [Tuber melanosporum Mel28] gi|295630353|emb|CAZ80717.1| unnamed protein product [Tuber melanosporum] Length = 703 Score = 43.6 bits (102), Expect = 0.025, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 PS V+ L GP G GK+ LA +++S + S L + I + + Sbjct: 470 PSGVL-LWGPPGCGKTLLAKAIANESGANLISIRGPELLNKYIGESERAV 518 >gi|125541515|gb|EAY87910.1| hypothetical protein OsI_09330 [Oryza sativa Indica Group] gi|125584054|gb|EAZ24985.1| hypothetical protein OsJ_08763 [Oryza sativa Japonica Group] Length = 418 Score = 43.6 bits (102), Expect = 0.025, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ +A + ++ +T L + I ++ + Sbjct: 198 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRD 249 >gi|119470156|ref|ZP_01612922.1| recombination protein [Alteromonadales bacterium TW-7] gi|119446577|gb|EAW27851.1| recombination protein [Alteromonadales bacterium TW-7] Length = 447 Score = 43.6 bits (102), Expect = 0.025, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 5/74 (6%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA I ++ + + A + I +++ T + Sbjct: 52 LILWGPPGVGKTTLAQIIANHADAELIQMSAVTAGVKDIRDSVTQAHDNLQS-RGQRTLM 110 Query: 127 F----HIINSIHQY 136 F H N Q Sbjct: 111 FVDEVHRFNKSQQD 124 >gi|56695429|ref|YP_165777.1| recombination factor protein RarA [Ruegeria pomeroyi DSS-3] gi|56677166|gb|AAV93832.1| ATPase, AAA family [Ruegeria pomeroyi DSS-3] Length = 438 Score = 43.6 bits (102), Expect = 0.025, Method: Composition-based stats. Identities = 33/204 (16%), Positives = 71/204 (34%), Gaps = 27/204 (13%) Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDID 117 S ++ GP G GK+ +A + + ++ + S I + + I Sbjct: 51 ASGSLSSLVFWGPPGVGKTTIARLLAQETDLHFVQISAIFTGVPDLKKVFEAA----RIR 106 Query: 118 LLDFNDTQLF----HIINSIHQYD-------SSLLM---TARTFPVSWGVCLPDLCSRLK 163 + T LF H N Q ++L+ T L SR + Sbjct: 107 RGNGQGTLLFVDEIHRFNKAQQDGFLPHMEDGTILLVGATTENPSFELNAA---LLSRAQ 163 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + ++S D + L + DR++ + + + + + L++++ A Sbjct: 164 VLVLERLSAEDLEHLTARAEREL-DRELPLTPEARLALQEMADGDGRALLNLIEQV--AA 220 Query: 224 LSRGMGITR-SLAAEVLKETQQCD 246 + R +LAA +++ + D Sbjct: 221 WKVAAPLEREALAARLMRRATKYD 244 >gi|1729860|sp|P54776|PRS6A_SOLLC RecName: Full=26S protease regulatory subunit 6A homolog; AltName: Full=LEMA-1; AltName: Full=Mg(2+)-dependent ATPase 1; AltName: Full=Tat-binding protein homolog 1; Short=TBP-1 gi|732815|emb|CAA52445.1| Mg-dependent ATPase 1 [Solanum lycopersicum] Length = 423 Score = 43.6 bits (102), Expect = 0.025, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ +A + ++ +T L + I ++ + Sbjct: 203 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRD 254 >gi|312876940|ref|ZP_07736915.1| AAA ATPase central domain protein [Caldicellulosiruptor lactoaceticus 6A] gi|311796255|gb|EFR12609.1| AAA ATPase central domain protein [Caldicellulosiruptor lactoaceticus 6A] Length = 441 Score = 43.6 bits (102), Expect = 0.026, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 63/139 (45%), Gaps = 25/139 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125 +IL GP G+GK+ +A++ ++ + T F I ++ + + ++E+ ++F+ T Sbjct: 55 IILYGPPGTGKTTIAHVIANATGKT-FKTINATIAGVNDIKK---IIEEA-KIEFSQTGR 109 Query: 126 ---LF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N + + +L+ A T + V L SR + V ++ Sbjct: 110 KTILFIDEIHRFNKLQQDALLPSVEEGIIILIGATTENPFYEVNKA-LVSR---SLVFEL 165 Query: 171 SLPDDDFLEKVIVKMFADR 189 ++ + K+I + +D+ Sbjct: 166 FPLKEEDILKIIERAISDK 184 >gi|262272122|gb|ACY40036.1| AT24528p [Drosophila melanogaster] Length = 829 Score = 43.6 bits (102), Expect = 0.026, Method: Composition-based stats. Identities = 37/205 (18%), Positives = 79/205 (38%), Gaps = 60/205 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 262 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 321 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148 + + +++ID + QL +++ + + ++M A P Sbjct: 322 SPAIIFIDEIDAIAPKRDKTHGEVERRIVSQLLTLMDGMKKSSHLIVMAATNRPNSIDPA 381 Query: 149 --------VSWGVCLPDLCSRLKAATVVKIS-----LPDDDFLEKVIVKMFADRQIFIDK 195 + +PD RL+ V++I L DD LE++ A+ + Sbjct: 382 LRRFGRFDREIDIGIPDATGRLE---VLRIHTKNMKLHDDVDLEQI----AAESHGHVGA 434 Query: 196 KLAAYIVQRMERSLVFAEKLVDKMD 220 LA+ S +++ +KMD Sbjct: 435 DLASLC------SEAALQQIREKMD 453 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 535 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKA 591 >gi|242092170|ref|XP_002436575.1| hypothetical protein SORBIDRAFT_10g005010 [Sorghum bicolor] gi|241914798|gb|EER87942.1| hypothetical protein SORBIDRAFT_10g005010 [Sorghum bicolor] Length = 430 Score = 43.6 bits (102), Expect = 0.026, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ +A + ++ +T L + I ++ + Sbjct: 210 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRD 261 >gi|321314984|ref|YP_004207271.1| ATPase possibly involved in protein degradation [Bacillus subtilis BSn5] gi|320021258|gb|ADV96244.1| ATPase possibly involved in protein degradation [Bacillus subtilis BSn5] Length = 423 Score = 43.6 bits (102), Expect = 0.026, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 47/127 (37%), Gaps = 17/127 (13%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS----------TRFSNIAKSLDSILIDTRKPVLLE 114 R ++L GP G+GK+ L + + T I + + +++E Sbjct: 221 RGILLYGPPGNGKTTLVKSIAGSIDAPVAYWQITEFTSSETIEEVFQAARRLAPAVLVIE 280 Query: 115 DIDLLDFNDTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 DID + + F +N+ + L+ +P L + R A +I Sbjct: 281 DIDSMPEDVRSFF--LNTLDGATSKEGLFLIGTTNYPEEIDPGLMNRAGRFDRA--YEIG 336 Query: 172 LPDDDFL 178 LPD++ Sbjct: 337 LPDEELR 343 >gi|319952206|ref|YP_004163473.1| aaa atpase central domain protein [Cellulophaga algicola DSM 14237] gi|319420866|gb|ADV47975.1| AAA ATPase central domain protein [Cellulophaga algicola DSM 14237] Length = 425 Score = 43.6 bits (102), Expect = 0.026, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 50/139 (35%), Gaps = 24/139 (17%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS---------------TRFSNIAKSLDSILIDTRK 109 +IL GP G+GK+ LANI + +S + AK + Sbjct: 40 PSLILWGPPGTGKTTLANIIAMESGRPFYTLSAINSGVKDIREVIDKAKQSGGLFTTKNP 99 Query: 110 PVLLEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168 + +++I + L + + L+ A T S+ V +P L SR V Sbjct: 100 ILFIDEIHRFSKSQQDSLL----AAVEKGWVTLIGATTENPSFEV-IPALLSR---CQVY 151 Query: 169 KISLPDDDFLEKVIVKMFA 187 + D L ++ + A Sbjct: 152 ILKEFGKDDLVALLERAIA 170 >gi|313677438|ref|YP_004055434.1| holliday junction DNA helicase ruvb [Marivirga tractuosa DSM 4126] gi|312944136|gb|ADR23326.1| Holliday junction DNA helicase RuvB [Marivirga tractuosa DSM 4126] Length = 342 Score = 43.6 bits (102), Expect = 0.026, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 3/74 (4%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P V+L GP G GK+ L++I +++ S+ LD LE+ D+L + Sbjct: 55 PLDHVLLHGPPGLGKTTLSHIIANELGSSLKVTSGPVLDKPGDLAGLLTNLEEGDVLFID 114 Query: 123 DTQLFHIINSIHQY 136 + H +N++ + Sbjct: 115 EI---HRLNAVVEE 125 >gi|291483756|dbj|BAI84831.1| hypothetical protein BSNT_02102 [Bacillus subtilis subsp. natto BEST195] Length = 373 Score = 43.6 bits (102), Expect = 0.026, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 47/127 (37%), Gaps = 17/127 (13%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS----------TRFSNIAKSLDSILIDTRKPVLLE 114 R ++L GP G+GK+ L + + T I + + +++E Sbjct: 221 RGILLYGPPGNGKTTLVKSIAGSIDAPVAYWQITEFTSSETIEEVFQAARRLAPAVLVIE 280 Query: 115 DIDLLDFNDTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 DID + + F +N+ + L+ +P L + R A +I Sbjct: 281 DIDSMPEDVRSFF--LNTLDGATSKEGLFLIGTTNYPEEIDPGLMNRAGRFDRA--YEIG 336 Query: 172 LPDDDFL 178 LPD++ Sbjct: 337 LPDEELR 343 >gi|256379279|ref|YP_003102939.1| recombination factor protein RarA [Actinosynnema mirum DSM 43827] gi|255923582|gb|ACU39093.1| AAA ATPase central domain protein [Actinosynnema mirum DSM 43827] Length = 448 Score = 43.6 bits (102), Expect = 0.026, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 69/176 (39%), Gaps = 32/176 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVL--------- 112 V+L GP G+GK+ LA + S + S K + +++ + ++ ++ Sbjct: 61 VLLYGPPGTGKTTLATLVSQATGRRFAALSALSAGVKEVRAVIEEAKRRLVRSGEATVLF 120 Query: 113 LEDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 ++++ L + LL+ A T + V P L SR + V+++ Sbjct: 121 IDEVHRFSKTQQDALL----GAVEDRIVLLVAATTENPFFSVVSP-LLSR---SLVLQLR 172 Query: 172 LPDDDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQ----RMERSLVFAEKLVDK 218 D + +++ + AD R + I+ ++V+ R+L E D Sbjct: 173 PLTDGSVRELVRRAAADERGLGGRVAIEPDAEDHLVRLAGGDGRRALTALEAAADT 228 >gi|226502552|ref|NP_001141483.1| hypothetical protein LOC100273594 [Zea mays] gi|194704750|gb|ACF86459.1| unknown [Zea mays] Length = 428 Score = 43.6 bits (102), Expect = 0.026, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ +A + ++ +T L + I ++ + Sbjct: 208 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRD 259 >gi|16078307|ref|NP_389124.1| ATPase possibly involved in protein degradation [Bacillus subtilis subsp. subtilis str. 168] gi|221309091|ref|ZP_03590938.1| hypothetical protein Bsubs1_06861 [Bacillus subtilis subsp. subtilis str. 168] gi|221313418|ref|ZP_03595223.1| hypothetical protein BsubsN3_06797 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318341|ref|ZP_03599635.1| hypothetical protein BsubsJ_06736 [Bacillus subtilis subsp. subtilis str. JH642] gi|221322614|ref|ZP_03603908.1| hypothetical protein BsubsS_06842 [Bacillus subtilis subsp. subtilis str. SMY] gi|81342375|sp|O34703|YJOB_BACSU RecName: Full=Uncharacterized ATPase YjoB gi|2612914|gb|AAC46338.1| cell division cycle CDC48 homolog [Bacillus subtilis subsp. subtilis str. 168] gi|2633596|emb|CAB13099.1| ATPase possibly involved in protein degradation [Bacillus subtilis subsp. subtilis str. 168] Length = 423 Score = 43.6 bits (102), Expect = 0.026, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 47/127 (37%), Gaps = 17/127 (13%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS----------TRFSNIAKSLDSILIDTRKPVLLE 114 R ++L GP G+GK+ L + + T I + + +++E Sbjct: 221 RGILLYGPPGNGKTTLVKSIAGSIDAPVAYWQITEFTSSETIEEVFQAARRLAPAVLVIE 280 Query: 115 DIDLLDFNDTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 DID + + F +N+ + L+ +P L + R A +I Sbjct: 281 DIDSMPEDVRSFF--LNTLDGATSKEGLFLIGTTNYPEEIDPGLMNRAGRFDRA--YEIG 336 Query: 172 LPDDDFL 178 LPD++ Sbjct: 337 LPDEELR 343 >gi|85080134|ref|XP_956487.1| hypothetical protein NCU01809 [Neurospora crassa OR74A] gi|18376102|emb|CAD21168.1| related to nuclear VCP-like protein [Neurospora crassa] gi|28917553|gb|EAA27251.1| conserved hypothetical protein [Neurospora crassa OR74A] Length = 884 Score = 43.6 bits (102), Expect = 0.026, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 57/166 (34%), Gaps = 39/166 (23%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILIDT 107 V+L GPSG GK+ LA+ + + A S+ D + Sbjct: 256 DNGVLLHGPSGCGKTTLAHAVAGSVGAAFIPVSAPSIVGGTSGESEKNIRDVFDEAIRLA 315 Query: 108 RKPVLLEDIDLLDFNDTQ---------LFHIIN---SIHQY----DSSLLMTARTFPVSW 151 + +++ID + + I+N I Q + +++ A P Sbjct: 316 PCLIFIDEIDAIAGKRESANKGMEGRIVAEIMNGMDRIKQQTPLGKNVVVLAATNRPDFL 375 Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P + R A + + +P++ E ++ + D + + + Sbjct: 376 D---PAIRRRFSA--EIDMGMPNERAREHILKSLSRD--LNVADDV 414 Score = 37.4 bits (86), Expect = 1.9, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 20/32 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P+ ++L GP G GK+ +A +++S++ S Sbjct: 581 PAAGILLWGPPGCGKTLVAKAVANESKANFIS 612 >gi|302308117|ref|NP_984925.2| AER065Cp [Ashbya gossypii ATCC 10895] gi|299789303|gb|AAS52749.2| AER065Cp [Ashbya gossypii ATCC 10895] Length = 774 Score = 43.6 bits (102), Expect = 0.026, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 66/172 (38%), Gaps = 40/172 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTR------------FSNIAKSLDSILIDTR-- 108 P R ++L GP G+GK+ L ++++ + + L +I + R Sbjct: 275 PPRGILLHGPPGTGKTMLLRCVANENDAHVQIINGPSLTSKFLGETEERLRAIFDEARQF 334 Query: 109 --KPVLLEDIDLLD----FND---------TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 +L+++ID + +D L +++ + S +++ P Sbjct: 335 QPSIILIDEIDSIAPSRDSDDAGEAESRVVATLLTLMDGVDSSGSIVVVATTNRPNKID- 393 Query: 154 CLPDLC--SRLKAATVVKISLPDDDFLEKVIVKMFAD----RQIFIDKKLAA 199 P L R V+I +PD ++++K + R+ F D+ +A Sbjct: 394 --PALRRPGRFN--VEVEIGVPDAAARLEILMKQVSRMAESRRGFTDQDIAE 441 Score = 37.1 bits (85), Expect = 2.6, Method: Composition-based stats. Identities = 25/197 (12%), Positives = 66/197 (33%), Gaps = 36/197 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106 P + ++L GP G K+ A + +S F+ + + + Sbjct: 544 PPKGILLYGPPGCSKTLTAKALATESGFNFFAIKGPEVLNKYVGETERTVRELFRKAKVA 603 Query: 107 TRKPVLLEDIDLLDF--NDTQ--------LFHIINSIH---QYDSSLLMTARTFPVSWGV 153 + +++ID L ++ L ++N I + + +++ A P Sbjct: 604 APSIIFIDEIDELAKTRDEDAGSSAAANVLITLLNEIDGVEELNGVVVVAATNKPHIIDS 663 Query: 154 CLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 L + S RL + ++ PD + +++ + + + ++ A Sbjct: 664 AL--IRSGRLD--KHIYVAPPDFEARLQILRNNTRTFGLDDPDAILKRLAEQTAHCSGAA 719 Query: 213 EKLVDKMDNLALSRGMG 229 + + + A++ Sbjct: 720 VAQLCR--DAAIAATRE 734 >gi|161076486|ref|NP_001097249.1| TER94, isoform C [Drosophila melanogaster] gi|157400263|gb|ABV53745.1| TER94, isoform C [Drosophila melanogaster] Length = 826 Score = 43.6 bits (102), Expect = 0.026, Method: Composition-based stats. Identities = 37/205 (18%), Positives = 79/205 (38%), Gaps = 60/205 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 259 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 318 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148 + + +++ID + QL +++ + + ++M A P Sbjct: 319 SPAIIFIDEIDAIAPKRDKTHGEVERRIVSQLLTLMDGMKKSSHLIVMAATNRPNSIDPA 378 Query: 149 --------VSWGVCLPDLCSRLKAATVVKIS-----LPDDDFLEKVIVKMFADRQIFIDK 195 + +PD RL+ V++I L DD LE++ A+ + Sbjct: 379 LRRFGRFDREIDIGIPDATGRLE---VLRIHTKNMKLHDDVDLEQI----AAESHGHVGA 431 Query: 196 KLAAYIVQRMERSLVFAEKLVDKMD 220 LA+ S +++ +KMD Sbjct: 432 DLASLC------SEAALQQIREKMD 450 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 532 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKA 588 >gi|50292021|ref|XP_448443.1| hypothetical protein [Candida glabrata CBS 138] gi|49527755|emb|CAG61404.1| unnamed protein product [Candida glabrata] Length = 559 Score = 43.6 bits (102), Expect = 0.026, Method: Composition-based stats. Identities = 31/215 (14%), Positives = 73/215 (33%), Gaps = 52/215 (24%) Query: 65 RVVILVGPSGSGKSCLANIW-----------------SDKSRSTRFSNIAKSLDSILIDT 107 +IL GP G GK+ LA + + K+ + +I + T Sbjct: 154 PSMILWGPPGVGKTTLARLLTKTASLHGSRYTMVETSATKANAQELRSIFEKGRKEYQLT 213 Query: 108 RKPVL--LEDIDLLDFNDTQLF--HIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSR 161 ++ V+ +++I + L H+ N +L+ T L SR Sbjct: 214 KRRVVLFIDEIHRFNKAQQDLLLPHVEN-----GDIVLIGATTENPSFQLNNA---LISR 265 Query: 162 LKAATVVKISLPDDDFLEKVIVK----MFADRQ--------IFIDKKLAAYIVQRMERSL 209 V + + + ++ + + R + + + + Y+ + S+ Sbjct: 266 ---CHVFVLEKLSETEVIIILSRGVALLNKLRNVIWNVKNPLKLSRSILVYL---CDISV 319 Query: 210 VFAEKLVDKMDNLALSRG---MGITRSLAAEVLKE 241 A + ++ ++ + +S +T E++K Sbjct: 320 GDARRALNLLEMIEVSTRHVEKELTIEQIREIIKN 354 >gi|11499558|ref|NP_070800.1| proteasome-activating nucleotidase [Archaeoglobus fulgidus DSM 4304] gi|3122632|sp|O28303|PAN_ARCFU RecName: Full=Proteasome-activating nucleotidase; Short=PAN; AltName: Full=Proteasomal ATPase; AltName: Full=Proteasome regulatory ATPase; AltName: Full=Proteasome regulatory particle gi|2648566|gb|AAB89280.1| 26S protease regulatory subunit 4 [Archaeoglobus fulgidus DSM 4304] Length = 398 Score = 43.6 bits (102), Expect = 0.026, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA ++++R+T + I ++ E Sbjct: 174 PPKGVLLYGPPGTGKTLLAKAVANQTRATFIRVVGSEFVQKYIGEGARLVRE 225 >gi|332295959|ref|YP_004437882.1| AAA ATPase central domain protein [Thermodesulfobium narugense DSM 14796] gi|332179062|gb|AEE14751.1| AAA ATPase central domain protein [Thermodesulfobium narugense DSM 14796] Length = 420 Score = 43.6 bits (102), Expect = 0.026, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 10/78 (12%) Query: 65 RVVILVGPSGSGKSCLANIWS--DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 R VIL GP G GK+ LA I + K+ + + + + K + D Sbjct: 46 RSVILYGPPGVGKTTLAKIIASYSKANFEILNAVLSGVPELRKIIEKAI----DDKKRGI 101 Query: 123 DTQLF----HIINSIHQY 136 +T LF H N Q Sbjct: 102 ETLLFVDEVHRWNKAQQD 119 >gi|88860147|ref|ZP_01134786.1| putative polynucleotide enzyme with nucleotide triphosphate hydrolase domain [Pseudoalteromonas tunicata D2] gi|88818141|gb|EAR27957.1| putative polynucleotide enzyme with nucleotide triphosphate hydrolase domain [Pseudoalteromonas tunicata D2] Length = 446 Score = 43.6 bits (102), Expect = 0.026, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 57/138 (41%), Gaps = 25/138 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS-------------NIAKSLDSILIDTRKPVLL 113 +IL GP G+GK+ LA + + + + ++ ++ +S+ R + + Sbjct: 52 MILWGPPGTGKTTLAQLIAHHATAQFIQLSAVTAGVKEIRESVQQAKNSLQHGQRTLLFV 111 Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++ + + F HI + + L + A T S+ + L SR + V + Sbjct: 112 DEVHRFNKSQQDAFLPHI-----EDGTFLFVGATTENPSFALNNAIL-SRTR---VYVLK 162 Query: 172 LP-DDDFLEKVIVKMFAD 188 DDD L+ + + D Sbjct: 163 SLTDDDLLQVINRALIQD 180 >gi|325660738|ref|ZP_08149366.1| hypothetical protein HMPREF0490_00098 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472812|gb|EGC76022.1| hypothetical protein HMPREF0490_00098 [Lachnospiraceae bacterium 4_1_37FAA] Length = 438 Score = 43.6 bits (102), Expect = 0.026, Method: Composition-based stats. Identities = 34/202 (16%), Positives = 78/202 (38%), Gaps = 37/202 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I GP G+GK+ LA + ++ + + T+ + + R+ +D + T Sbjct: 55 IIFYGPPGTGKTTLAKVIANTTSANFTQINATVAGKKDMEEVVRQA---KDNQGMYGKKT 111 Query: 125 QLF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + + +L+ A T + V L SR +++ ++ Sbjct: 112 ILFVDEIHRFNKGQQDYLLPFVEDGTLILIGATTENPYFEVNGA-LISR---SSIFELKP 167 Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 + + + K+I++ D R + ID+ ++ A ++ ++ L+ Sbjct: 168 LEKEDIRKLIMRALTDEERGMGSYHAIIDEDALEFLADICG---GDARNALNAIELGVLT 224 Query: 226 RGMG------ITRSLAAEVLKE 241 IT + +E +++ Sbjct: 225 TERSEDGKIHITIDVVSECIQK 246 >gi|239978025|ref|ZP_04700549.1| AAA ATPase, central region [Streptomyces albus J1074] gi|291449928|ref|ZP_06589318.1| ATPase [Streptomyces albus J1074] gi|291352877|gb|EFE79779.1| ATPase [Streptomyces albus J1074] Length = 876 Score = 43.6 bits (102), Expect = 0.026, Method: Composition-based stats. Identities = 37/207 (17%), Positives = 70/207 (33%), Gaps = 31/207 (14%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSR-------------------STRFSNIAKSLDSI 103 PSR ++ G G+GK+ +A + + R + A+ ++ Sbjct: 370 PSRHLVFTGNPGTGKTTVARLLGEMYRDAGVLTRGHCVEAGPGDLIAGFVGQTAQRTAAV 429 Query: 104 LIDTRKPVLLED------IDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCL-- 155 + VL D F D + ++ + L++ +P L Sbjct: 430 IDRALDGVLFIDEAYGLSDQREGFGDQAIETLLKRMEDDRDRLVVVVAGYPGKMEEFLDA 489 Query: 156 -PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI---VQRMERSLVF 211 P L SR VV D L +++ A R + ++A + V+ + R+ Sbjct: 490 NPGLRSRFPLTNVVPFPDHDPGALHTILMNRLAQRGMTAGAEVAEELRQIVENLHRTRGA 549 Query: 212 AEKLVDKMDNLALSRGMGITRSLAAEV 238 V +M LA + + + EV Sbjct: 550 TFGNVREMRTLADAVRSRWSVRIGPEV 576 >gi|296138295|ref|YP_003645538.1| ATP-dependent metalloprotease FtsH [Tsukamurella paurometabola DSM 20162] gi|296026429|gb|ADG77199.1| ATP-dependent metalloprotease FtsH [Tsukamurella paurometabola DSM 20162] Length = 801 Score = 43.6 bits (102), Expect = 0.026, Method: Composition-based stats. Identities = 41/269 (15%), Positives = 86/269 (31%), Gaps = 64/269 (23%) Query: 22 KNKEEQLFFSFPRCL---GISRD----------DLLVHSAIEQAVRLIDSWPSWPSRVVI 68 K+K +QL P+ D D L + A QA+ P V+ Sbjct: 155 KSKAKQLTKDMPKTTFADVAGADEAVEELYEIKDFLQNPARYQALG-----AKIPKGVL- 208 Query: 69 LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP----------------VL 112 L GP G+GK+ LA + ++ F+ + + + Sbjct: 209 LYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFEQAKENSPCIIF 268 Query: 113 LEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCLPD 157 +++ID + + L + ++ +L+ A P L Sbjct: 269 VDEIDAVGRQRGAGMGGGHDEREQTLNQLLVEMDGFGDRQGIILIAATNRPDILDPAL-- 326 Query: 158 LCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVFAE 213 L+ + +S PD + ++ + + + + + +R + A Sbjct: 327 ----LRPGRFDRQIPVSNPDMAGRKAILEVHA--KGKPLADDVDLSGLAKRTP-GMSGA- 378 Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKET 242 L + ++ AL + A +L+E+ Sbjct: 379 DLANVINEAALLTARENGSQITAPILEES 407 >gi|268590184|ref|ZP_06124405.1| replication-associated recombination protein A [Providencia rettgeri DSM 1131] gi|291314464|gb|EFE54917.1| replication-associated recombination protein A [Providencia rettgeri DSM 1131] Length = 447 Score = 43.6 bits (102), Expect = 0.026, Method: Composition-based stats. Identities = 41/198 (20%), Positives = 71/198 (35%), Gaps = 36/198 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G+GK+ LA I + +++ R S + + I K + T Sbjct: 53 MILWGPPGTGKTTLAEIIGNYAQADIERISAVTSGIKEIRESIEKA----RQNRSAGRRT 108 Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N Q D ++ T L SR A V + Sbjct: 109 ILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSA---LLSR---ARVYLL 162 Query: 171 SLPDDDFLEKVIVKMFAD--RQI-----FIDK---KLAAYIVQRMERSLVFAEKLVDKMD 220 +++ +E+V+++ AD R + + K+ A +V R + +++ M Sbjct: 163 KSLEENDIEQVLLQALADSSRGLGGQNIVLPDNTRKMVAQLVNGDARRSLNLLEMMADMA 222 Query: 221 NLALSRGMGITRSLAAEV 238 +T L EV Sbjct: 223 EADSQGQRILTADLLKEV 240 >gi|195332987|ref|XP_002033173.1| GM21173 [Drosophila sechellia] gi|195582062|ref|XP_002080847.1| GD10706 [Drosophila simulans] gi|194125143|gb|EDW47186.1| GM21173 [Drosophila sechellia] gi|194192856|gb|EDX06432.1| GD10706 [Drosophila simulans] Length = 801 Score = 43.6 bits (102), Expect = 0.026, Method: Composition-based stats. Identities = 37/205 (18%), Positives = 79/205 (38%), Gaps = 60/205 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 234 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 293 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148 + + +++ID + QL +++ + + ++M A P Sbjct: 294 SPAIIFIDEIDAIAPKRDKTHGEVERRIVSQLLTLMDGMKKSSHLIVMAATNRPNSIDPA 353 Query: 149 --------VSWGVCLPDLCSRLKAATVVKIS-----LPDDDFLEKVIVKMFADRQIFIDK 195 + +PD RL+ V++I L DD LE++ A+ + Sbjct: 354 LRRFGRFDREIDIGIPDATGRLE---VLRIHTKNMKLHDDVDLEQI----AAESHGHVGA 406 Query: 196 KLAAYIVQRMERSLVFAEKLVDKMD 220 LA+ S +++ +KMD Sbjct: 407 DLASLC------SEAALQQIREKMD 425 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 507 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKA 563 >gi|159905016|ref|YP_001548678.1| replication factor C large subunit [Methanococcus maripaludis C6] gi|226739139|sp|A9A6N2|RFCL_METM6 RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|159886509|gb|ABX01446.1| AAA ATPase central domain protein [Methanococcus maripaludis C6] Length = 484 Score = 43.6 bits (102), Expect = 0.026, Method: Composition-based stats. Identities = 38/221 (17%), Positives = 72/221 (32%), Gaps = 44/221 (19%) Query: 45 VHSAIEQAVRLIDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNI 96 V + LI+ W ++L GP GSGK+ LA + Sbjct: 16 VAGHNKTKETLIE----WIESFVSGQKQKPILLAGPPGSGKTTLAYAIAKDYAYDVIELN 71 Query: 97 A---------------KSLDSILIDTRKPVLLEDIDLLDFNDT--QLFHIINSIHQYDSS 139 A + + R ++L+++D L ND + II + ++ Sbjct: 72 ASDKRNKDVISQVVGTAATSKSITGRRTLIVLDEVDGLSGNDDRGGVAEIIKVLKTAENP 131 Query: 140 LLMTART--FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 +++TA P + ++ + + + V+ K+ ID+K+ Sbjct: 132 VILTANDVYKPALMTLR--------NNVNLINVGSVHTNSIPPVLRKIALKEGFEIDEKV 183 Query: 198 AAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238 I L A D +L+ G + A E+ Sbjct: 184 IKTIASHAGGDLRAAIN-----DLQSLATGGSLEVEDAKEL 219 >gi|126180097|ref|YP_001048062.1| AAA family ATPase, CDC48 subfamily protein [Methanoculleus marisnigri JR1] gi|125862891|gb|ABN58080.1| AAA family ATPase, CDC48 subfamily [Methanoculleus marisnigri JR1] Length = 805 Score = 43.6 bits (102), Expect = 0.026, Method: Composition-based stats. Identities = 26/164 (15%), Positives = 60/164 (36%), Gaps = 33/164 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTR-- 108 P + V+L GP G+GK+ +A + +S + S + L + D R Sbjct: 217 PPKGVLLYGPPGTGKTLIAKAVASESGAHFISIAGPEVISKYYGESEQRLREVFEDARQH 276 Query: 109 --KPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + ++++D + QL +++ + + +++ A Sbjct: 277 APAIIFIDELDSIAPRREEVTGEVERRVVAQLLTMMDGLEERGQVVVIGAT---NRLDAI 333 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198 P L + ++I +P +D +V+ R + + +A Sbjct: 334 DPALRRPGRFDREIEIGVPAEDDRTQVL--HIHTRGMPLADDVA 375 Score = 36.3 bits (83), Expect = 3.7, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 18/32 (56%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + V+L GP G+GK+ +A + +S + Sbjct: 490 PPKGVLLYGPPGTGKTLIAKAVASESGANFVP 521 >gi|90424538|ref|YP_532908.1| IstB-like ATP-binding protein [Rhodopseudomonas palustris BisB18] gi|90424550|ref|YP_532920.1| IstB-like ATP-binding protein [Rhodopseudomonas palustris BisB18] gi|90106552|gb|ABD88589.1| IstB-like ATP-binding protein [Rhodopseudomonas palustris BisB18] gi|90106564|gb|ABD88601.1| IstB-like ATP-binding protein [Rhodopseudomonas palustris BisB18] Length = 287 Score = 43.6 bits (102), Expect = 0.026, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 49/110 (44%), Gaps = 22/110 (20%) Query: 64 SRVVILVGPSGSGKSCLANIWS-------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 R ++L+G +G+GK+ LA + + R ++ L++ + R+ + E + Sbjct: 98 QRNIVLIGGTGTGKTHLAIAIARSCIRSGARGRFYNVVDLVNRLEAETRNGRQGQIAEHL 157 Query: 117 ---DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 DL+ ++ LFH+++ +++ +S+++T W Sbjct: 158 TRMDLIVLDELGYLPFAQSGGQLLFHLVSRLYER-TSIIVTTNLAFGEWP 206 >gi|332251957|ref|XP_003275118.1| PREDICTED: nuclear valosin-containing protein isoform 2 [Nomascus leucogenys] Length = 749 Score = 43.6 bits (102), Expect = 0.027, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 59/168 (35%), Gaps = 42/168 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P R V+L GP G GK+ LAN + + A + + + + Sbjct: 190 PPRGVLLHGPPGCGKTLLANAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFEQAVSN 249 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151 + +++ID + QL + N++ L++ A P S Sbjct: 250 APCIIFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSL 309 Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKK 196 L +A + + +PD+ E+++ + R++ + + Sbjct: 310 DPALR------RAGRFDREICLGIPDEASRERILQTLC--RKLRLPQA 349 >gi|289191993|ref|YP_003457934.1| AAA ATPase central domain protein [Methanocaldococcus sp. FS406-22] gi|288938443|gb|ADC69198.1| AAA ATPase central domain protein [Methanocaldococcus sp. FS406-22] Length = 371 Score = 43.6 bits (102), Expect = 0.027, Method: Composition-based stats. Identities = 24/170 (14%), Positives = 59/170 (34%), Gaps = 34/170 (20%) Query: 61 SWPSRVVILVGPSGSGKSCLANIWSDKSR------------STRFSNIAKSLDSILIDTR 108 W + V+ GP G+GK+ +A + ++ + +K + + Sbjct: 151 EWAPKNVLFYGPPGTGKTLMARALATETNSSFILVKAPELIGEHVGDASKMIRELYQRAS 210 Query: 109 K----PVLLEDIDLLDFNDT-------------QLFHIINSIHQYDSSLLMTARTFPVSW 151 + V ++++D + + L ++ I + + + + A P Sbjct: 211 ENAPCIVFIDELDAIGLSREYQSLRGDVSEVVNALLTELDGIKENEGVVTIAATNNPAML 270 Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 P + SR + K+ P+D+ K++ I + L ++ Sbjct: 271 D---PAIRSRFEEEIEFKL--PNDEERLKIMELYAKKMPIPVKANLKEFV 315 >gi|262203872|ref|YP_003275080.1| ATP-dependent metalloprotease FtsH [Gordonia bronchialis DSM 43247] gi|262087219|gb|ACY23187.1| ATP-dependent metalloprotease FtsH [Gordonia bronchialis DSM 43247] Length = 793 Score = 43.6 bits (102), Expect = 0.027, Method: Composition-based stats. Identities = 33/213 (15%), Positives = 69/213 (32%), Gaps = 45/213 (21%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110 R V+L GP G+GK+ LA + ++ F+ + + Sbjct: 200 RGVLLFGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFEQAKANSP 259 Query: 111 --VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGV 153 + +++ID + + L + ++ +L+ A P Sbjct: 260 CIIFVDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGDRSGVILIAATNRPDILDP 319 Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME-RSL 209 L L+ + + PD + ++ + I D L + +R S Sbjct: 320 AL------LRPGRFDRQIPVGNPDMAGRKAILRVHAKGKPIDADADL-DGLAKRTPGMSG 372 Query: 210 VFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 +V + AL +++ AE+L+E Sbjct: 373 ADLANVV---NEAALLAARENKQTITAEMLEEA 402 >gi|171911243|ref|ZP_02926713.1| ATPase, AAA family protein [Verrucomicrobium spinosum DSM 4136] Length = 466 Score = 43.6 bits (102), Expect = 0.027, Method: Composition-based stats. Identities = 41/180 (22%), Positives = 70/180 (38%), Gaps = 31/180 (17%) Query: 67 VILVGPSGSGKSCLANIWSDK--SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I GP G GK+ LA I S++ SR S + ++ I + E + L+ T Sbjct: 76 LIFYGPPGVGKTTLATIISNETHSRFVTLSGVESNVAEIRMVADAA---EKEERLNGIGT 132 Query: 125 QLF----HIINSIHQ-------YDSSL-LMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N Q SL + A T + + P L SR + V + Sbjct: 133 VLFVDEIHRFNKSQQDVLLPHLERGSLRFIGATTHNPFFYINSP-LVSR---SQVFTLEP 188 Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 + LE++I + AD R + I + ++ + K ++ ++ AL+ Sbjct: 189 LTVEHLERLIDQAIADEERGLGKLHVEITPEAKRHLAVVCD---GDGRKCLNALELAALT 245 >gi|46122305|ref|XP_385706.1| hypothetical protein FG05530.1 [Gibberella zeae PH-1] Length = 821 Score = 43.6 bits (102), Expect = 0.027, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 64/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R V+L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 255 PPRGVLLFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 314 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + + ++M A P S Sbjct: 315 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSID-- 372 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + V I +PD +++ + + + + Sbjct: 373 -PALR-RFGRFDREVDIGVPDPTGRLEILQ--IHTKNMKLGDDV 412 >gi|326473927|gb|EGD97936.1| AAA family ATPase [Trichophyton tonsurans CBS 112818] Length = 551 Score = 43.6 bits (102), Expect = 0.027, Method: Composition-based stats. Identities = 34/214 (15%), Positives = 74/214 (34%), Gaps = 37/214 (17%) Query: 49 IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN------------- 95 LI+ +IL G +G+GK+ LA + + S Sbjct: 163 NGVLRGLIERDR---VPSMILWGSAGTGKTTLARVIASMVGSRFVEINSTSSGVAECKKL 219 Query: 96 IAKSLDSILIDTRKPVLL-EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 A++ + + + RK ++ ++I + +F + L+ A T S+ V Sbjct: 220 FAEAKNELSLTGRKTIIFCDEIHRFSKSQQDVFL---GPVESGQVTLIGATTENPSFKVQ 276 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ------IFIDKKLAAYIVQRMERS 208 L SR ++ ++ + ++ + +D +L Y+ + Sbjct: 277 NA-LLSR---CRTFTLAKLTEENICAILNRALRVEGPNYSPSALVDDELIKYLAAFADGD 332 Query: 209 LVFAEKLVD-KMD---NLALSR---GMGITRSLA 235 A L++ MD +++ +TR+L Sbjct: 333 ARTALNLLELAMDLSQRENMTKDELKKSLTRTLV 366 >gi|297820436|ref|XP_002878101.1| CIP111 [Arabidopsis lyrata subsp. lyrata] gi|297323939|gb|EFH54360.1| CIP111 [Arabidopsis lyrata subsp. lyrata] Length = 1025 Score = 43.6 bits (102), Expect = 0.027, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 47/121 (38%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSR------------STRFSNIAKSLDSILIDTRKP 110 P++ V++ GP G+GK+ LA ++ S S K+LD + Sbjct: 420 PTKGVLIYGPPGTGKTSLARSFARDSGVNFFSVNGPEIISQYLGESEKALDEVFRSASNA 479 Query: 111 ----VLLEDIDLLD-----FNDT-------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 V ++D+D + + L ++++ I + D +++ A P S Sbjct: 480 TPAVVFIDDLDAIAPARKEGGEELSQRMVATLLNLMDGISRSDGVVVIAATNRPDSIEPA 539 Query: 155 L 155 L Sbjct: 540 L 540 >gi|302881263|ref|XP_003039549.1| hypothetical protein NECHADRAFT_55976 [Nectria haematococca mpVI 77-13-4] gi|256720402|gb|EEU33836.1| hypothetical protein NECHADRAFT_55976 [Nectria haematococca mpVI 77-13-4] Length = 242 Score = 43.6 bits (102), Expect = 0.027, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 45/136 (33%), Gaps = 41/136 (30%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK----------------P 110 ++L GP G+GK+ L + +S ++ SL S + + Sbjct: 3 ILLYGPPGTGKTHLTRSIAKESGASMLCVDGASLLSKYVGEIEKNIKAAFTLATKLHPCV 62 Query: 111 VLLEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTA------------R 145 + ++++D L ++ L + + ++ A R Sbjct: 63 LFIDEVDSLFYDRGMARRTWERSAVTQFLMQMDGLAQNDKAPCVILATNRPNSLDNAFLR 122 Query: 146 TFPVSWGVCLPDLCSR 161 P + LPD+ SR Sbjct: 123 RLPQKIPIGLPDMKSR 138 >gi|194702228|gb|ACF85198.1| unknown [Zea mays] gi|223950171|gb|ACN29169.1| unknown [Zea mays] Length = 428 Score = 43.6 bits (102), Expect = 0.027, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ +A + ++ +T L + I ++ + Sbjct: 208 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRD 259 >gi|125596214|gb|EAZ35994.1| hypothetical protein OsJ_20298 [Oryza sativa Japonica Group] Length = 368 Score = 43.6 bits (102), Expect = 0.027, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ +A + ++ +T L + I ++ + Sbjct: 195 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRD 246 >gi|225712126|gb|ACO11909.1| 26S protease regulatory subunit 6A [Lepeophtheirus salmonis] gi|290462793|gb|ADD24444.1| 26S protease regulatory subunit 6A [Lepeophtheirus salmonis] Length = 429 Score = 43.6 bits (102), Expect = 0.027, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + +L GP G+GK+ LA + ++ ST L + I ++ + Sbjct: 209 PPKGALLYGPPGTGKTLLARACAAQTNSTFLKLAGPQLVQMFIGDGAKLVRD 260 >gi|124803745|ref|XP_001347804.1| conserved Plasmodium protein [Plasmodium falciparum 3D7] gi|23496055|gb|AAN35717.1| conserved Plasmodium protein [Plasmodium falciparum 3D7] Length = 707 Score = 43.6 bits (102), Expect = 0.027, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 68/170 (40%), Gaps = 24/170 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS-----NIAKSLDSILIDT---------RKPVL 112 +IL GP GSGKS L N+ +K+ + S N+ L + + + + Sbjct: 216 LILCGPPGSGKSSLVNVIRNKTNNCFISLFHLNNLNNELRKVYDKSVINYKISKKKSILC 275 Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 ++DI+ L+ + + +I + + LL T P + L SR + ++ Sbjct: 276 IKDINRLNKSQQENLLLI--LKKGYFYLLATCLFNP--MNILNASLSSR---CLYLYLNS 328 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 + LE +I ++ I I++ I+ S A ++ +D Sbjct: 329 YEKTELELIIKRITNKLDIQIEEDALNLIMNH---SCGDARVAINIIDFA 375 >gi|288958714|ref|YP_003449055.1| ATPase [Azospirillum sp. B510] gi|288911022|dbj|BAI72511.1| ATPase [Azospirillum sp. B510] Length = 439 Score = 43.6 bits (102), Expect = 0.027, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 49/144 (34%), Gaps = 22/144 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ +A + + + F ++ + D RK T L Sbjct: 59 MILWGPPGCGKTTIARLLAHSTD-LHFEPLSAVFSGVA-DLRKVFDAARARRAAGQGTLL 116 Query: 127 F----HIINSIHQYD---------SSLLMTARTFPV-SWGVCLPDLCSRLKAATVVKISL 172 F H N Q +L+ P L SR A V ++ Sbjct: 117 FIDEIHRFNRSQQDGFLPFVEDGTVTLVGATTENPSFELNAA---LLSR---AQVFVLNR 170 Query: 173 PDDDFLEKVIVKMFADRQIFIDKK 196 DD LEK++ + A+ + Sbjct: 171 LDDAALEKLLSRAEAEMGRPLPLD 194 >gi|20094804|ref|NP_614651.1| ATPase of the AAA+ class [Methanopyrus kandleri AV19] gi|19888016|gb|AAM02581.1| Predicted ATPase of the AAA+ class [Methanopyrus kandleri AV19] Length = 336 Score = 43.6 bits (102), Expect = 0.027, Method: Composition-based stats. Identities = 34/222 (15%), Positives = 81/222 (36%), Gaps = 41/222 (18%) Query: 57 DSWPSWPSRVVILVGPSGSGKSC------------LANIWSDKSRSTRFSNIAKSLDSIL 104 + + W + V+ GP+G+GK+ L ++ + + ++ + Sbjct: 113 EEFRDWAPKTVLFYGPTGTGKTHTARAVAGEAKVPLLHMNAAEILGKYVGEASERIRRAF 172 Query: 105 IDTRKP----VLLEDIDLLDFND-------------TQLFHIINSIHQYDSSLL-MTART 146 RK L++ID L + L ++ + ++ + A Sbjct: 173 TRARKAAPCVFFLDEIDALALDRRYQELRGDVVESVNALLTNLDRLKNEGEGVVFIAATN 232 Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRM 205 P P + +R + ++ +LP+ E+++ + +++ + + YI R Sbjct: 233 QPDILD---PAVRNRFEY--EIEFTLPNKREREELV--RYYAKKLPMPLDVDPRYIAART 285 Query: 206 -ERSLVFA-EKLVDKMDNLALSRGM-GITRSLAAEVLKETQQ 244 S E+++ + AL G I R +VL + ++ Sbjct: 286 GGMSHREIKERVLKRALLEALREGAEKIERKHIQKVLNQERE 327 >gi|318041651|ref|ZP_07973607.1| cell division protein FtsH [Synechococcus sp. CB0101] Length = 600 Score = 43.6 bits (102), Expect = 0.027, Method: Composition-based stats. Identities = 35/197 (17%), Positives = 64/197 (32%), Gaps = 43/197 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ FS A + + Sbjct: 179 VLLVGPPGTGKTLLAKAIAGEAGVPFFSMAASEFVELFVGVGASRVRDLFRQAKEKAPCI 238 Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 V +++ID + ND QL ++ +L+ A P L Sbjct: 239 VFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFADNSGVILLAATNRPDVLDTAL 298 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 ++ + + LPD E ++ R + + LA + R A Sbjct: 299 ------MRPGRFDRRIHVDLPDRRGREAILAVHARSRPLDPEVSLADW-ASRTP-GFSGA 350 Query: 213 EKLVDKMDNLALSRGMG 229 L + ++ A+ Sbjct: 351 -DLSNLLNEAAILTARR 366 >gi|261204033|ref|XP_002629230.1| vacuolar protein sorting-associated protein VPS4 [Ajellomyces dermatitidis SLH14081] gi|239587015|gb|EEQ69658.1| vacuolar protein sorting-associated protein VPS4 [Ajellomyces dermatitidis SLH14081] gi|239608750|gb|EEQ85737.1| vacuolar protein sorting-associated protein VPS4 [Ajellomyces dermatitidis ER-3] gi|327355463|gb|EGE84320.1| vacuolar protein sorting-associated protein VPS4 [Ajellomyces dermatitidis ATCC 18188] Length = 433 Score = 43.6 bits (102), Expect = 0.027, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 53/142 (37%), Gaps = 41/142 (28%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS---------------ILIDT 107 P + ++L GP G+GKS LA + ++ ST FS + L S + ++ Sbjct: 163 PWKAILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESERLVKQLFNMARES 222 Query: 108 RKPVL-LEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 R ++ ++++D L L + + L++ A P + Sbjct: 223 RPAIIFIDEVDALCGPRGEGESEASRRIKTELLVQMQGVGKDSEGILVLGATNIPWQLDI 282 Query: 154 C------------LPDLCSRLK 163 LPDL +R+K Sbjct: 283 AIRRRFQRRVHISLPDLRARMK 304 >gi|229827568|ref|ZP_04453637.1| hypothetical protein GCWU000182_02957 [Abiotrophia defectiva ATCC 49176] gi|229788206|gb|EEP24320.1| hypothetical protein GCWU000182_02957 [Abiotrophia defectiva ATCC 49176] Length = 437 Score = 43.6 bits (102), Expect = 0.027, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 66/175 (37%), Gaps = 29/175 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS-------------NIAKSLDSILIDTRKPVLL 113 +I GP G GK+ LA I + K+ S + +AK+ ++ + R + + Sbjct: 53 MIFWGPPGVGKTTLAGIIAAKTHSEFINFSAVTSGIKEIKEVMAKAGETRKLGMRTVLFV 112 Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 ++I + F + S +L+ A T S+ + L SR V + Sbjct: 113 DEIHRFNKAQQDAFLPF---VERGSIILIGATTENPSFEINAA-LLSR---CKVFVLKQL 165 Query: 174 DDDFLEKVIVKMFADRQ------IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 + + K++ + D++ + I +L I S A ++ ++ Sbjct: 166 TTEDIAKLLTRALKDKKGFGMLNVEIADELVHAIALF---SNGDARTALNTLEMA 217 >gi|17137560|ref|NP_477369.1| TER94, isoform A [Drosophila melanogaster] gi|122087253|sp|Q7KN62|TERA_DROME RecName: Full=Transitional endoplasmic reticulum ATPase TER94; AltName: Full=Valosin-containing protein homolog gi|4689330|gb|AAD27852.1|AF132553_1 BcDNA.GM02885 [Drosophila melanogaster] gi|7303816|gb|AAF58863.1| TER94, isoform A [Drosophila melanogaster] gi|220942716|gb|ACL83901.1| TER94-PA [synthetic construct] Length = 801 Score = 43.6 bits (102), Expect = 0.027, Method: Composition-based stats. Identities = 37/205 (18%), Positives = 79/205 (38%), Gaps = 60/205 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 234 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 293 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148 + + +++ID + QL +++ + + ++M A P Sbjct: 294 SPAIIFIDEIDAIAPKRDKTHGEVERRIVSQLLTLMDGMKKSSHLIVMAATNRPNSIDPA 353 Query: 149 --------VSWGVCLPDLCSRLKAATVVKIS-----LPDDDFLEKVIVKMFADRQIFIDK 195 + +PD RL+ V++I L DD LE++ A+ + Sbjct: 354 LRRFGRFDREIDIGIPDATGRLE---VLRIHTKNMKLHDDVDLEQI----AAESHGHVGA 406 Query: 196 KLAAYIVQRMERSLVFAEKLVDKMD 220 LA+ S +++ +KMD Sbjct: 407 DLASLC------SEAALQQIREKMD 425 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 507 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKA 563 >gi|284164772|ref|YP_003403051.1| 26S proteasome subunit P45 family [Haloterrigena turkmenica DSM 5511] gi|284014427|gb|ADB60378.1| 26S proteasome subunit P45 family [Haloterrigena turkmenica DSM 5511] Length = 405 Score = 43.6 bits (102), Expect = 0.028, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 29/64 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P V+L GP G+GK+ LA ++++ +T L I ++ + D+ + Sbjct: 182 PPSGVLLYGPPGTGKTMLAKAVANETNATFIKMAGSELVHKFIGEGAKLVRDLFDVAREH 241 Query: 123 DTQL 126 + + Sbjct: 242 EPAV 245 >gi|258647387|ref|ZP_05734856.1| ATPase, AAA family [Prevotella tannerae ATCC 51259] gi|260852753|gb|EEX72622.1| ATPase, AAA family [Prevotella tannerae ATCC 51259] Length = 422 Score = 43.6 bits (102), Expect = 0.028, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 66/177 (37%), Gaps = 38/177 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIA--------------KSLDSILIDTRKPVL 112 IL GP G GK+ LA I + + ++ ++ A + + D + Sbjct: 41 FILWGPPGVGKTTLARIVATQFKAPFYTLSAVNSGVKDVRDVIEKAAKNRFFSDQSPILF 100 Query: 113 LEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++I + L + + + L+ A T S+ V P L SR V ++ Sbjct: 101 IDEIHRFSKSQQDSLL----AAVENGTITLIGATTENPSFEVIRP-LLSR---CQVYVLN 152 Query: 172 LPDDDFLEKVIVK------MFADRQIFI--DKKLAAYIVQRMERSLVFAEKLVDKMD 220 D L +++ + ++QI + L Y S A KL++ +D Sbjct: 153 SLTKDELLQLLQHALTTDELLKEQQIELKETDALLRY-------SGGDARKLLNILD 202 >gi|237708886|ref|ZP_04539367.1| TnpB [Bacteroides sp. 9_1_42FAA] gi|229456948|gb|EEO62669.1| TnpB [Bacteroides sp. 9_1_42FAA] Length = 236 Score = 43.6 bits (102), Expect = 0.028, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 48/112 (42%), Gaps = 22/112 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDTR 108 +IL+GPSG+GK+ LA + + +++ I+ I Sbjct: 103 LILIGPSGTGKTFLAAGLVFDAVKAGYKAYLMTMEDIVNCLRLKDISTPAMMTYNKILRA 162 Query: 109 KPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 + + ++DI L T F++IN++H+ +S+++T P L D Sbjct: 163 QLLAIDDIMLFPVKRKEATAFFNLINTLHE-KTSIIITTNKAPTECVETLND 213 >gi|164662265|ref|XP_001732254.1| hypothetical protein MGL_0029 [Malassezia globosa CBS 7966] gi|159106157|gb|EDP45040.1| hypothetical protein MGL_0029 [Malassezia globosa CBS 7966] Length = 426 Score = 43.6 bits (102), Expect = 0.028, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P + ++ GP G+GK+ LA + ++ + SL + I ++ + +L Sbjct: 206 PPKGALMYGPPGTGKTLLARACAAQTNACYLKLAGPSLVQMFIGDGAKLVRDAFELA 262 >gi|161525591|ref|YP_001580603.1| recombination factor protein RarA [Burkholderia multivorans ATCC 17616] gi|189349680|ref|YP_001945308.1| recombination factor protein RarA [Burkholderia multivorans ATCC 17616] gi|221201180|ref|ZP_03574220.1| ATPase, AAA family [Burkholderia multivorans CGD2M] gi|221206366|ref|ZP_03579379.1| ATPase, AAA family [Burkholderia multivorans CGD2] gi|160343020|gb|ABX16106.1| AAA ATPase central domain protein [Burkholderia multivorans ATCC 17616] gi|189333702|dbj|BAG42772.1| putative ATPase [Burkholderia multivorans ATCC 17616] gi|221173675|gb|EEE06109.1| ATPase, AAA family [Burkholderia multivorans CGD2] gi|221179030|gb|EEE11437.1| ATPase, AAA family [Burkholderia multivorans CGD2M] Length = 436 Score = 43.6 bits (102), Expect = 0.028, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 58/170 (34%), Gaps = 22/170 (12%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA + + + A I E ++ + T L Sbjct: 50 MILWGPPGVGKTTLARLTALAFDCEFIALSAVLGGVKDIREAMDQAKETLNRTGRH-TIL 108 Query: 127 F----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N + + A T S+ V L SR A V + Sbjct: 109 FVDEIHRFNKGQQDALLPFVESGLVTFIGATTENPSFEVNSA-LLSR---AQVYVLKSLT 164 Query: 175 DDFLEKVIVK--MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 DD + +++ + A + D K ++ + A + ++ ++ Sbjct: 165 DDEMRQLLKRAQHIALDGLEFDDKAVDTLIGYAD---GDARRFLNLLEQA 211 >gi|332232434|ref|XP_003265410.1| PREDICTED: 26S protease regulatory subunit 4-like [Nomascus leucogenys] Length = 328 Score = 43.6 bits (102), Expect = 0.028, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 14/81 (17%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 106 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELTQKYLGDGPKLVRE-------- 157 Query: 123 DTQLFHIINSIHQYDSSLLMT 143 + ++ S++ T Sbjct: 158 ------LFRVAEEHAPSIVFT 172 >gi|322514789|ref|ZP_08067812.1| replication-associated recombination protein A [Actinobacillus ureae ATCC 25976] gi|322119251|gb|EFX91381.1| replication-associated recombination protein A [Actinobacillus ureae ATCC 25976] Length = 446 Score = 43.6 bits (102), Expect = 0.028, Method: Composition-based stats. Identities = 37/206 (17%), Positives = 69/206 (33%), Gaps = 41/206 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I GP G+GK+ LA I + + R S + + I + ++ T Sbjct: 52 MIFWGPPGTGKTTLAEIIAHHFDAEVERLSAVTSGVKEIREAIERA----KLNRQTGRRT 107 Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSR-----LKAA 165 LF H N Q D +++ T L SR LK Sbjct: 108 LLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNA---LLSRARIYILKPL 164 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 V+I + K +R + ++ + + + +A ++ M Sbjct: 165 QTVEIHQ---ILQNALFDK---ERGLGNESFVLEDDVLTLLADYVNGDGRYALNCLELMS 218 Query: 221 NLALS--RGMGITRSLAAEVLKETQQ 244 ++A +G + ++L E+L E Sbjct: 219 DMAEQGTQGKILNKALLTELLGERSA 244 >gi|218885443|ref|YP_002434764.1| recombination factor protein RarA [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756397|gb|ACL07296.1| AAA ATPase central domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 408 Score = 43.6 bits (102), Expect = 0.028, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 63/162 (38%), Gaps = 14/162 (8%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSIL--IDTRKPVLLEDIDLLD 120 ++L GP G GKS LA + ++ + R S L + + ++L+++ Sbjct: 39 PSLLLFGPPGCGKSTLALLLANAHGTKVLRLSAPEAGLQQLRRSLSGVDVLVLDELHRFS 98 Query: 121 FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 F I + ++ T S+ V L SRL V+++ + L + Sbjct: 99 KAQQDFFLPI---LESGEITMIATTTENPSFSVTRQ-LLSRL---HVMRLRPLGREELME 151 Query: 181 VIVKMFADRQIFIDKKLAAYI--VQRME-RSLVFAEKLVDKM 219 + + ++ + + ++ + + R+++ + V + Sbjct: 152 LGRRGGTAQEAPLTDDVLDFLSGMSHGDARAMLNLVEYVAGL 193 >gi|195375722|ref|XP_002046649.1| GJ12996 [Drosophila virilis] gi|194153807|gb|EDW68991.1| GJ12996 [Drosophila virilis] Length = 933 Score = 43.6 bits (102), Expect = 0.028, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 16/79 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 PSR ++L GP G GK+ LA + + + A L + + + Sbjct: 283 PSRGLLLHGPPGCGKTYLARAIAGQLKMPLLEVPATELIGGISGESEERIRDVFEQAIDN 342 Query: 107 TRKPVLLEDIDLLDFNDTQ 125 + + +++ID + N Sbjct: 343 SPCVLFIDEIDAIAGNRQW 361 Score = 39.4 bits (91), Expect = 0.51, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 PS V+ L GP G GK+ LA ++++ S L ++ + + + Sbjct: 685 PSGVL-LCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESERAV 733 >gi|169611346|ref|XP_001799091.1| hypothetical protein SNOG_08783 [Phaeosphaeria nodorum SN15] gi|111062831|gb|EAT83951.1| hypothetical protein SNOG_08783 [Phaeosphaeria nodorum SN15] Length = 738 Score = 43.6 bits (102), Expect = 0.028, Method: Composition-based stats. Identities = 36/201 (17%), Positives = 69/201 (34%), Gaps = 48/201 (23%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID--------------TRKPVL 112 V+L GP G GK+ LA + +S++ S L + + + P + Sbjct: 514 VLLWGPPGCGKTLLAKAVAAESKANFISVKGPELLNKYVGESERAIRQVFQRARSSAPCV 573 Query: 113 L--EDIDLLDFNDTQLFH-----IINSIHQY-------DSSLLMTARTFPVSWG---VCL 155 + ++ D L + H ++N++ L+ A P + Sbjct: 574 VFFDEFDALAPKRSTELHEASARVVNTLLTELDGLSMRQGIYLIAATNRPEMIDEAILRP 633 Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER------SL 209 L +RL + LP ++ + R + + +LA + ER S Sbjct: 634 GRLETRL------YVGLPSPKERVDILRALIRQRGV-LSAELALF----GERDECTNFSG 682 Query: 210 VFAEKLVDKMDNLALSRGMGI 230 E L+ + +AL R + Sbjct: 683 ADLEALLRRAGQIALRRKSDV 703 >gi|253574915|ref|ZP_04852255.1| AAA ATPase central domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251845961|gb|EES73969.1| AAA ATPase central domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 452 Score = 43.2 bits (101), Expect = 0.028, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 70/180 (38%), Gaps = 31/180 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID---LLDFND 123 ++L GP G GK+ LA+I S +++ ++D+ + D R+ ++E Sbjct: 69 ILLYGPPGCGKTTLAHIISHHTKAEFVR--LNAVDASVKDVRE--VIEKAQNDKAFYGTK 124 Query: 124 TQLF----HIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 T LF H NS Q +++ T + L SR +T+ ++ Sbjct: 125 TILFLDEVHRFNSSRQDALLPAVEKGTIIFIGATTENPFHYVNGALMSR---STLFQLEP 181 Query: 173 PDDDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 + + + AD++ + +D++ +I + ++ ++ A++ Sbjct: 182 LTKEHSLIAMRRALADQEKGLGFMPLQVDEEALLHIAAMAN---GDIRRALNALELAAMT 238 >gi|3337433|gb|AAC27447.1| transitional endoplasmic reticulum ATPase TER94 [Drosophila melanogaster] Length = 801 Score = 43.2 bits (101), Expect = 0.028, Method: Composition-based stats. Identities = 37/205 (18%), Positives = 79/205 (38%), Gaps = 60/205 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 234 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 293 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148 + + +++ID + QL +++ + + ++M A P Sbjct: 294 SPAIIFIDEIDAIAPKRDKTHGEVERRIVSQLLTLMDGMKKSSHLIVMAATNRPNSIDPA 353 Query: 149 --------VSWGVCLPDLCSRLKAATVVKIS-----LPDDDFLEKVIVKMFADRQIFIDK 195 + +PD RL+ V++I L DD LE++ A+ + Sbjct: 354 LRRFGRFDREIDIGIPDATGRLE---VLRIHTKNMKLHDDVDLEQI----AAESHGHVGA 406 Query: 196 KLAAYIVQRMERSLVFAEKLVDKMD 220 LA+ S +++ +KMD Sbjct: 407 DLASLC------SEAALQQIREKMD 425 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 507 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKA 563 >gi|85375691|ref|YP_459753.1| cell division cycle protein [Erythrobacter litoralis HTCC2594] gi|84788774|gb|ABC64956.1| Cell division cycle protein [Erythrobacter litoralis HTCC2594] Length = 772 Score = 43.2 bits (101), Expect = 0.028, Method: Composition-based stats. Identities = 35/196 (17%), Positives = 74/196 (37%), Gaps = 40/196 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTR-- 108 P + V+L GP G+GK+ LA +++S + + + K+L + + Sbjct: 239 PPKGVLLHGPPGTGKTRLAQAVANESDANFSIINGPEIMGSGYGDSEKALREVFENASKN 298 Query: 109 --KPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + + +++ A P + Sbjct: 299 APAIIFIDEIDSIAPKRDRVAGEAEKRLVAQLLTLMDGLEARANVVVIAATNRPDAIDEA 358 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 L R V I +PD++ +++ R + + ++ + RM V A Sbjct: 359 LRR-PGRFDREIV--IGVPDENGRREIL--GIHTRGMPLGDRVDLRELARMTYGFVGA-- 411 Query: 215 LVDKMDNLALSRGMGI 230 D AL+R I Sbjct: 412 -----DIAALAREAAI 422 >gi|325118113|emb|CBZ53664.1| hypothetical protein NCLIV_034460 [Neospora caninum Liverpool] Length = 592 Score = 43.2 bits (101), Expect = 0.028, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 62/164 (37%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R V+L GP GSGK+ +A ++++ + F SN+ ++ + + Sbjct: 25 PPRGVLLYGPPGSGKTLIAKAVANETGAFFFLINGPEVMSKMAGEAESNLRRAFEEAEKN 84 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + +++ A Sbjct: 85 APAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGLKGRGQVVVIGAT---NRQNSI 141 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PDD+ +++ R + + + Sbjct: 142 DPALR-RFGRFDREIDIGVPDDNGRLEIL--RIHTRNMKLANDV 182 Score = 37.8 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 24/57 (42%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA + + + S L ++ + + E D Sbjct: 298 PSRGVLFYGPPGCGKTLLAKAVASECSANFVSIKGPELLTMWFGESEANVREVFDKA 354 >gi|253681470|ref|ZP_04862267.1| recombination factor protein RarA [Clostridium botulinum D str. 1873] gi|253561182|gb|EES90634.1| recombination factor protein RarA [Clostridium botulinum D str. 1873] Length = 419 Score = 43.2 bits (101), Expect = 0.028, Method: Composition-based stats. Identities = 40/202 (19%), Positives = 76/202 (37%), Gaps = 40/202 (19%) Query: 67 VILVGPSGSGKSCLANIW------------SDKSRSTRFSNIAKSLDSIL--IDTRKPVL 112 +IL GP G GK+ LA+I + + K + +L R Sbjct: 54 IILYGPPGVGKTTLAHIISLDTKSEFVKLNATSTGVKEIREYIKKAEEVLKFYGKRTIFF 113 Query: 113 LEDIDLL--DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 +++I L L + +L+ A T + + L SR + + ++ Sbjct: 114 IDEIHSLKKGSQQDALL----EAIEKGIVVLIGATTENPYFEINRA-LLSR---SKIFQL 165 Query: 171 SLPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 ++ + +V+ + D R I IDK++ IV ++ S A ++ ++ Sbjct: 166 ESLKENEIVEVLQRALKDSKRGYGNLKINIDKEVLK-IVAKL--SGGDARGSLNTLELAI 222 Query: 224 LSRGMG----ITRSLAAEVLKE 241 LS IT + E++KE Sbjct: 223 LSTPRNSDGSITIN--KEIIKE 242 >gi|195635679|gb|ACG37308.1| 26S protease regulatory subunit 6A [Zea mays] Length = 428 Score = 43.2 bits (101), Expect = 0.028, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ +A + ++ +T L + I ++ + Sbjct: 208 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRD 259 >gi|51090591|dbj|BAD36043.1| putative 26S proteasome regulatory particle triple-A ATPase subunit5a [Oryza sativa Japonica Group] Length = 265 Score = 43.2 bits (101), Expect = 0.028, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ +A + ++ +T L + I ++ + Sbjct: 45 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRD 96 >gi|332251959|ref|XP_003275119.1| PREDICTED: nuclear valosin-containing protein isoform 3 [Nomascus leucogenys] Length = 764 Score = 43.2 bits (101), Expect = 0.029, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 59/168 (35%), Gaps = 42/168 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P R V+L GP G GK+ LAN + + A + + + + Sbjct: 205 PPRGVLLHGPPGCGKTLLANAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFEQAVSN 264 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151 + +++ID + QL + N++ L++ A P S Sbjct: 265 APCIIFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSL 324 Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKK 196 L +A + + +PD+ E+++ + R++ + + Sbjct: 325 DPALR------RAGRFDREICLGIPDEASRERILQTLC--RKLRLPQA 364 >gi|296282012|ref|ZP_06860010.1| cell division cycle protein [Citromicrobium bathyomarinum JL354] Length = 769 Score = 43.2 bits (101), Expect = 0.029, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 72/196 (36%), Gaps = 40/196 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106 P + V+L GP G+GK+ LA +++S + F+ + + ++ Sbjct: 239 PPKGVLLHGPPGTGKTRLAQAVANESDAEFFAINGPEIMGSGYGESEKRLREVFENANQA 298 Query: 107 TRKPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + + +++ A P + Sbjct: 299 APAIIFIDEIDSIAPKRDSVPGEAEKRLVAQLLTLMDGLESRANIVVIAATNRPDAIDEA 358 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 L R V I +PD+ +++ R + + + + + R+ V A Sbjct: 359 LRR-PGRFDREIV--IGVPDETGRREIL--AIHTRGMPLGEGVDLKELARVTHGFVGA-- 411 Query: 215 LVDKMDNLALSRGMGI 230 D AL+R I Sbjct: 412 -----DIAALAREAAI 422 >gi|239628694|ref|ZP_04671725.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239518840|gb|EEQ58706.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 438 Score = 43.2 bits (101), Expect = 0.029, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 63/172 (36%), Gaps = 24/172 (13%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I GP G+GK+ LA + ++ + + A ++ +++ + T Sbjct: 53 GSIIFYGPPGTGKTTLAKVIANTTSADFKQINATVAGKKDMEEVVKGAKDNM-GMYGRKT 111 Query: 125 QLF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + + +L+ A T + V L SR + + ++ Sbjct: 112 ILFVDEIHRFNKGQQDYLLPFVEDGTLILIGATTENPYFEVNGA-LLSR---SRIFELKP 167 Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVD 217 + + + ++I + D R + ID+ A ++ A V+ Sbjct: 168 LEKEDIRELIHRAVYDKERGMGAYDPVIDEDAADFLADTANGDARAALNAVE 219 >gi|114763607|ref|ZP_01443012.1| putative transposase [Pelagibaca bermudensis HTCC2601] gi|114543887|gb|EAU46899.1| putative transposase [Roseovarius sp. HTCC2601] Length = 755 Score = 43.2 bits (101), Expect = 0.029, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 68/162 (41%), Gaps = 24/162 (14%) Query: 14 DKQKNDQPKNKEEQLFFS-FPRCLGISRDDLLVHSAIEQAVR-LIDSWPSWPSRVVILVG 71 + Q ++ + Q+ + P ++ D E VR L+ + R V+L+G Sbjct: 559 AEINEKQARSIKYQMTIAKLPLAKEVNEFDFEETPVNETLVRVLVSAEFLEQQRNVVLIG 618 Query: 72 PSGSGKSCLANIWSD-------KSRSTRFSNIAKSLDSILIDTRKP-----------VLL 113 +G+GKS LA + + R ++ LD+ D R+ V+L Sbjct: 619 GTGTGKSHLAVGIARACIRSGKRGRFFNVVDLVNKLDAEARDDRQGRIADLLCRMDFVIL 678 Query: 114 EDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWG 152 +++ L F T LFH+I+ +++ +S+++T W Sbjct: 679 DELGYLPFAQTGGQLLFHLISRLYER-TSIIVTTNLDFGEWP 719 >gi|148243691|ref|YP_001219931.1| IstB ATP binding domain-containing protein [Acidiphilium cryptum JF-5] gi|148243744|ref|YP_001219984.1| IstB ATP binding domain-containing protein [Acidiphilium cryptum JF-5] gi|146400254|gb|ABQ28789.1| IstB domain protein ATP-binding protein [Acidiphilium cryptum JF-5] gi|146400307|gb|ABQ28842.1| IstB domain protein ATP-binding protein [Acidiphilium cryptum JF-5] Length = 291 Score = 43.2 bits (101), Expect = 0.029, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 25/133 (18%) Query: 48 AIEQAVRLI--DSWPSWPSRVVILVGPSGSGKSCLANI---------WS-------DKSR 89 + Q + L D W + ++ GP G GKS LA W D + Sbjct: 90 SKAQVLALCSGDGWLDTGANLLA-FGPPGGGKSHLAAAIGLALVENGWRVLFTRTSDLVQ 148 Query: 90 STRFSNIAKSLDSIL--IDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTA 144 + + +L++ + +D ++L+D+ + + + LF +I S SL++TA Sbjct: 149 KLQIARRELALEATIAKLDKFHLLILDDLAYVTKDQAETSVLFELI-STRYERRSLMITA 207 Query: 145 RTFPVSWGVCLPD 157 WG PD Sbjct: 208 NQPFGEWGKVFPD 220 >gi|115350891|ref|YP_772730.1| recombination factor protein RarA [Burkholderia ambifaria AMMD] gi|115280879|gb|ABI86396.1| Recombination protein MgsA [Burkholderia ambifaria AMMD] Length = 436 Score = 43.2 bits (101), Expect = 0.029, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 61/180 (33%), Gaps = 23/180 (12%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA + + + A I + ++ + T L Sbjct: 50 MILWGPPGVGKTTLARLTALAFDCEFIALSAVLGGVKDIRESMEQAKDTLNRTGRH-TIL 108 Query: 127 F----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N + + A T S+ V L SR A V + Sbjct: 109 FVDEIHRFNKGQQDALLPFVESGLVTFIGATTENPSFEVNSA-LLSR---AQVYVLQSLS 164 Query: 175 DDFLEKVIVKM--FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL-ALSRGMGIT 231 DD + +++ + A + D K ++ + A + ++ ++ + IT Sbjct: 165 DDEMRQLLKRAQEIALDGLAFDDKAVDTLIGYAD---GDARRFLNLLEQAQTAAASSRIT 221 >gi|320450980|ref|YP_004203076.1| holliday junction DNA helicase RuvB [Thermus scotoductus SA-01] gi|320151149|gb|ADW22527.1| holliday junction DNA helicase RuvB [Thermus scotoductus SA-01] Length = 323 Score = 43.2 bits (101), Expect = 0.029, Method: Composition-based stats. Identities = 30/206 (14%), Positives = 75/206 (36%), Gaps = 30/206 (14%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLL 113 P ++L GP G GK+ LA++ + + + ++ + ++ + + Sbjct: 38 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLEEGDILFI 97 Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD---------------- 157 ++I L + H+ ++ + +++ + + LP Sbjct: 98 DEIHRLSRQAEE--HLYPAMEDFKMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAP 155 Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 L SR V + + L + + + + I ++ A I +R ++ A++L Sbjct: 156 LRSRF--GIVEHLEYYSLEELAEGVRRDARLLGVAITEEAALEIAKRSRGTMRVAKRLFR 213 Query: 218 KM-DNLALSRGMGITRSLAAEVLKET 242 ++ D ++ IT+ E L Sbjct: 214 RVRDFAQVAGEETITQERTLEALNAL 239 >gi|297676986|ref|XP_002816398.1| PREDICTED: LOW QUALITY PROTEIN: ATPase WRNIP1-like [Pongo abelii] Length = 658 Score = 43.2 bits (101), Expect = 0.029, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 16/83 (19%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA+I ++ S+ + S + + + D+ N+ Sbjct: 255 PSLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 309 Query: 125 QLF-----------HIINSIHQY 136 F H N Q Sbjct: 310 SFFKRKTILFIDEIHRFNKSQQD 332 >gi|255081660|ref|XP_002508052.1| predicted protein [Micromonas sp. RCC299] gi|226523328|gb|ACO69310.1| predicted protein [Micromonas sp. RCC299] Length = 509 Score = 43.2 bits (101), Expect = 0.029, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 23/48 (47%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 V+L GP G GK+ LA + +S +T FS A + + + + Sbjct: 47 VMLTGPPGCGKTLLARAVAGESGATFFSLTASEFVEMFVGVGAARVRD 94 >gi|223973381|gb|ACN30878.1| unknown [Zea mays] Length = 366 Score = 43.2 bits (101), Expect = 0.029, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ +A + ++ +T L + I ++ + Sbjct: 146 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRD 197 >gi|146303255|ref|YP_001190571.1| vesicle-fusing ATPase [Metallosphaera sedula DSM 5348] gi|145701505|gb|ABP94647.1| Vesicle-fusing ATPase [Metallosphaera sedula DSM 5348] Length = 703 Score = 43.2 bits (101), Expect = 0.029, Method: Composition-based stats. Identities = 37/215 (17%), Positives = 71/215 (33%), Gaps = 52/215 (24%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTRKP 110 P + V+L GP G+GK+ +A ++ + + K L I K Sbjct: 206 PPKGVLLYGPPGTGKTLIAKALANSVMANFFFISGPEIGSKYYGESEKRLREIFEQAEKS 265 Query: 111 ----VLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + N QL +++ + L++ A P + Sbjct: 266 APSMIFIDEIDAIAPNRDVTNGEADKRIVAQLLTLMDGVSSSGGLLVLGATNRPNAIDPA 325 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 L R +I +P D ++ + R+I + + + L Sbjct: 326 L-----RRPGRFDREIEIPVPDKRARLDIIKIHTRRIPLAEDV----------DLEAIAS 370 Query: 215 LVDKM---DNLALSRGMGITRSLAAEVLKETQQCD 246 + + D AL T S L+ TQ + Sbjct: 371 MTNGFVGADLEALV--REATMS----ALRRTQNPE 399 Score = 39.0 bits (90), Expect = 0.67, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 PS V+ L GP G+GK+ LA + +S + + L Sbjct: 467 PSGVM-LYGPPGTGKTMLAKAVAHESGANFIAVSGPEL 503 >gi|47157022|gb|AAT12385.1| 26S proteasome regulatory subunit T1 [Antonospora locustae] Length = 412 Score = 43.2 bits (101), Expect = 0.029, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 66/200 (33%), Gaps = 38/200 (19%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V+L GP G+GK+ LA ++++ + I L + ++ Sbjct: 189 PPKGVLLYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVREIFELAKSK 248 Query: 113 ------LEDIDLLDFN----------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGV 153 +++D + +IN + ++ A P + Sbjct: 249 KAAIIFFDEVDAFGGTRFEDSGENEVQRTMLELINQLDGFDSRGNIKVLMATNRPDTLHP 308 Query: 154 CLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM-ERSLVF 211 L L RL V+ LPD + +++ + ++K + ++ RM S Sbjct: 309 AL--LRPGRLD--RKVEFGLPDAEGRTQILKIHAKT--MSVEKNIRYDLIARMCPNSTGA 362 Query: 212 -AEKLVDKMDNLALSRGMGI 230 + + A+ I Sbjct: 363 ELRSVCTEAGMFAIRERRKI 382 >gi|332704198|ref|ZP_08424286.1| AAA ATPase central domain protein [Desulfovibrio africanus str. Walvis Bay] gi|332554347|gb|EGJ51391.1| AAA ATPase central domain protein [Desulfovibrio africanus str. Walvis Bay] Length = 426 Score = 43.2 bits (101), Expect = 0.029, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 67/165 (40%), Gaps = 18/165 (10%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSIL--IDTRKPVLLEDIDLLD 120 ++L GP GSGKS LA + + + R S L + + ++L+++ Sbjct: 47 PSLLLFGPPGSGKSTLALLLARSTGRPYRRVSAPETGLAELRKQLSGVDLLILDEVHRYS 106 Query: 121 FNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178 F + N + +L+ T P + V L SRL V+++ D L Sbjct: 107 KAQQDFFLPQLEN----GEVTLIATTTENPS-FSVTRQ-LLSRL---HVLRLMPLADPDL 157 Query: 179 EKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 ++ + + I ++ + +V + S A L++ ++ +A Sbjct: 158 LEITNRGLKALNLEIPEE-SRRLVAGV--SGGDARTLLNLLEYVA 199 >gi|297616929|ref|YP_003702088.1| Holliday junction DNA helicase RuvB [Syntrophothermus lipocalidus DSM 12680] gi|297144766|gb|ADI01523.1| Holliday junction DNA helicase RuvB [Syntrophothermus lipocalidus DSM 12680] Length = 346 Score = 43.2 bits (101), Expect = 0.029, Method: Composition-based stats. Identities = 41/210 (19%), Positives = 78/210 (37%), Gaps = 37/210 (17%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P V+L GP G GK+ LA++ +++ +L+ LE ++L + Sbjct: 54 PLDHVLLSGPPGLGKTTLASVIANEMGKPIRKTSGPALERPGDLAAILTNLEPGEVLFID 113 Query: 123 DTQLFHIINSIHQY--------------------DSSL--------LMTARTFPVSWGVC 154 + H +N + + +L L+ A T P Sbjct: 114 EI---HRLNRVVEEILYPAMEDFAIDIVIGKGPSARTLRLDLPPFTLIGATTRPGLLSSP 170 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 L D + + ++ ++D L +I + A I ID+ A I +R + A + Sbjct: 171 LRD-----RFGILCRLDFYEEDELILIITRSAALLGISIDEGGAREIARRARGTPRIANR 225 Query: 215 LVDKM-DNLALSRGMGITRSLAAEVLKETQ 243 L+ ++ D + G I +AA L + + Sbjct: 226 LLKRVRDFAVVQSGGTIDAEIAAMALSKLE 255 >gi|260768112|ref|ZP_05877046.1| ATPase AAA family [Vibrio furnissii CIP 102972] gi|260616142|gb|EEX41327.1| ATPase AAA family [Vibrio furnissii CIP 102972] Length = 449 Score = 43.2 bits (101), Expect = 0.029, Method: Composition-based stats. Identities = 40/199 (20%), Positives = 64/199 (32%), Gaps = 38/199 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G+GK+ LA + ++ + + A + I E+ L T L Sbjct: 54 MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAREN--KLAGRRTIL 111 Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172 F H N Q D ++ T L SR A V K++ Sbjct: 112 FVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKLTS 165 Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIV------QRMERSLVFAEKLVDKM 219 + + + + D R + + + RM + +L+ M Sbjct: 166 LSQTEIRQALDQAIEDTERGLGKQVAQFHDNVLDRLSELVNGDARMSLNY---LELLYDM 222 Query: 220 DNLALSRGMGITRSLAAEV 238 IT SL AEV Sbjct: 223 AEENEQGEKQITLSLLAEV 241 >gi|168049694|ref|XP_001777297.1| predicted protein [Physcomitrella patens subsp. patens] gi|162671399|gb|EDQ57952.1| predicted protein [Physcomitrella patens subsp. patens] Length = 411 Score = 43.2 bits (101), Expect = 0.029, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ +A + ++ +T L + I ++ + Sbjct: 191 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRD 242 >gi|77462287|ref|YP_351791.1| recombination factor protein RarA [Rhodobacter sphaeroides 2.4.1] gi|77386705|gb|ABA77890.1| Recombination protein MgsA [Rhodobacter sphaeroides 2.4.1] Length = 437 Score = 43.2 bits (101), Expect = 0.029, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 68/201 (33%), Gaps = 35/201 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ +A + + ++ A + D RK + + T L Sbjct: 57 LILWGPPGVGKTTIARLLAKETDLAFVQISAIFTG--VPDLRKVFEAAKLRRANGQGTLL 114 Query: 127 F----HIINSIHQYD-------SSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172 F H N Q ++L+ T L SR A V+ + Sbjct: 115 FVDEIHRFNKAQQDGFLPHMEDGTILLVGATTENPSFELNAA---LMSR---AQVIVL-- 166 Query: 173 PDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 D + ++ R + +D +++ + LV+++ +A Sbjct: 167 --DRLSLADLERLAQRAEHETGRALPLDGPAREALLEMADGDGRALLNLVEQV--MAWKV 222 Query: 227 GMGITR-SLAAEVLKETQQCD 246 + R LA +++ + D Sbjct: 223 KGPLDRDQLATRLMRRAAKYD 243 >gi|116050600|ref|YP_790581.1| recombination factor protein RarA [Pseudomonas aeruginosa UCBPP-PA14] gi|115585821|gb|ABJ11836.1| putative ATPase associated with chromosome architecture [Pseudomonas aeruginosa UCBPP-PA14] Length = 441 Score = 43.2 bits (101), Expect = 0.029, Method: Composition-based stats. Identities = 39/210 (18%), Positives = 78/210 (37%), Gaps = 32/210 (15%) Query: 57 DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 ++ +I GP G GK+ LA + + S + F I+ L + + + + Sbjct: 40 EALEQGALHSMIFWGPPGVGKTTLARLLAQVSDAH-FETISAVLSGVKEIRQAVEVAKQH 98 Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162 T LF H N Q D +L+ T L SR Sbjct: 99 AAQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154 Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLV 216 A V + D+ L K++ + + R++ + ++ ++ + +L+ Sbjct: 155 --ARVYVLKSLDEAALRKLVGRALNEDKGLGKRKLSLPEESFQVLLAAAD---GDGRRLL 209 Query: 217 DKMDNLA-LSR-GMGITRSLAAEVLKETQQ 244 + ++N A L+ G I+ L +L +T++ Sbjct: 210 NLLENAADLAEDGSEISPELLQNLLGDTRR 239 >gi|15597809|ref|NP_251303.1| recombination factor protein RarA [Pseudomonas aeruginosa PAO1] gi|107102135|ref|ZP_01366053.1| hypothetical protein PaerPA_01003185 [Pseudomonas aeruginosa PACS2] gi|218891226|ref|YP_002440092.1| recombination factor protein RarA [Pseudomonas aeruginosa LESB58] gi|254235599|ref|ZP_04928922.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|254241046|ref|ZP_04934368.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|296388928|ref|ZP_06878403.1| recombination factor protein RarA [Pseudomonas aeruginosa PAb1] gi|9948679|gb|AAG06001.1|AE004690_1 conserved hypothetical protein [Pseudomonas aeruginosa PAO1] gi|126167530|gb|EAZ53041.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|126194424|gb|EAZ58487.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|218771451|emb|CAW27218.1| putative ATPase associated with chromosome architecture [Pseudomonas aeruginosa LESB58] Length = 441 Score = 43.2 bits (101), Expect = 0.029, Method: Composition-based stats. Identities = 39/210 (18%), Positives = 78/210 (37%), Gaps = 32/210 (15%) Query: 57 DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 ++ +I GP G GK+ LA + + S + F I+ L + + + + Sbjct: 40 EALEQGALHSMIFWGPPGVGKTTLARLLAQVSDAH-FETISAVLSGVKEIRQAVEVAKQH 98 Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162 T LF H N Q D +L+ T L SR Sbjct: 99 AAQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154 Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLV 216 A V + D+ L K++ + + R++ + ++ ++ + +L+ Sbjct: 155 --ARVYVLKSLDEAALRKLVGRALNEDKGLGKRKLRLPEESFQVLLAAAD---GDGRRLL 209 Query: 217 DKMDNLA-LSR-GMGITRSLAAEVLKETQQ 244 + ++N A L+ G I+ L +L +T++ Sbjct: 210 NLLENAADLAEDGSEISPELLQNLLGDTRR 239 >gi|325270474|ref|ZP_08137076.1| AAA family ATPase [Prevotella multiformis DSM 16608] gi|324987197|gb|EGC19178.1| AAA family ATPase [Prevotella multiformis DSM 16608] Length = 406 Score = 43.2 bits (101), Expect = 0.030, Method: Composition-based stats. Identities = 32/194 (16%), Positives = 68/194 (35%), Gaps = 27/194 (13%) Query: 67 VILVGPSGSGKSCLANIWSDK--SRSTRFSNIAKSLDSI------------LIDTRKPVL 112 IL GP G GK+ LA I + + + S + + + + Sbjct: 41 FILWGPPGVGKTTLAQIIAHRLETPFYTLSAVTSGVKDVRDVIERAQKGRFFNSASPILF 100 Query: 113 LEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++I + L + + L+ A T S+ V P L SR + + Sbjct: 101 IDEIHRFSKSQQDSLL----GAVEKGTVTLIGATTENPSFEVIRP-LLSR---CQLYVLK 152 Query: 172 LPD-DDFLEKVIVKMFADRQI---FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 + DD L + + D ++ ID +++ +++ + + A Sbjct: 153 PLEKDDLLTLLHRAVAEDTELKKRHIDLHETDALLRYSGGDARKLLNILELIVDAAPDGT 212 Query: 228 MGITRSLAAEVLKE 241 + +T + E L++ Sbjct: 213 VTVTDRIVEERLQQ 226 >gi|315640057|ref|ZP_07895182.1| AAA family ATPase [Enterococcus italicus DSM 15952] gi|315484185|gb|EFU74656.1| AAA family ATPase [Enterococcus italicus DSM 15952] Length = 423 Score = 43.2 bits (101), Expect = 0.030, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 65/172 (37%), Gaps = 24/172 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKP-------VLLEDID 117 +IL GP G+GK+ +A+ + ++ + + + I + +LL+++ Sbjct: 42 MILYGPPGTGKTSIASAIAGSTQFAFRTLNAATDTKKDLQIVAEEAKMSGTVILLLDEVH 101 Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 LD D L H+ N +L+ A T + P + SR + ++ + Sbjct: 102 RLDKTKQDFLLPHLEN-----GRIILIGATTENPYITIN-PAIRSR---TQIFEVYPLSE 152 Query: 176 DFLEKVIVKMFAD--RQIFIDKKLAAYI-VQRMER-SLVFAEKLVDKMDNLA 223 + + + D R + D + + + R + ++ ++ A Sbjct: 153 SDIYHALEQALQDSERGLGKDAITIDEVALTHLARVTNGDLRSALNALELAA 204 >gi|313107649|ref|ZP_07793832.1| putative ATPase associated with chromosome architecture [Pseudomonas aeruginosa 39016] gi|310880334|gb|EFQ38928.1| putative ATPase associated with chromosome architecture [Pseudomonas aeruginosa 39016] Length = 441 Score = 43.2 bits (101), Expect = 0.030, Method: Composition-based stats. Identities = 39/210 (18%), Positives = 78/210 (37%), Gaps = 32/210 (15%) Query: 57 DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 ++ +I GP G GK+ LA + + S + F I+ L + + + + Sbjct: 40 EALEQGALHSMIFWGPPGVGKTTLARLLAQVSDAH-FETISAVLSGVKEIRQAVEVAKQH 98 Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162 T LF H N Q D +L+ T L SR Sbjct: 99 AAQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154 Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLV 216 A V + D+ L K++ + + R++ + ++ ++ + +L+ Sbjct: 155 --ARVYVLKSLDEAALRKLVGRALNEDKGLGKRKLRLPEESFQVLLAAAD---GDGRRLL 209 Query: 217 DKMDNLA-LSR-GMGITRSLAAEVLKETQQ 244 + ++N A L+ G I+ L +L +T++ Sbjct: 210 NLLENAADLAEDGSEISPELLQNLLGDTRR 239 >gi|182418590|ref|ZP_02949870.1| holliday junction DNA helicase RuvB [Clostridium butyricum 5521] gi|237668079|ref|ZP_04528063.1| Holliday junction DNA helicase RuvB [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377593|gb|EDT75144.1| holliday junction DNA helicase RuvB [Clostridium butyricum 5521] gi|237656427|gb|EEP53983.1| Holliday junction DNA helicase RuvB [Clostridium butyricum E4 str. BoNT E BL5262] Length = 347 Score = 43.2 bits (101), Expect = 0.030, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 3/70 (4%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G GK+ LANI + + +++ L+D D+L ++ Sbjct: 55 VLLYGPPGLGKTTLANIIAKEMTGDLKVTSGPAIERAGDLAAILTTLKDYDVLFIDEI-- 112 Query: 127 FHIINSIHQY 136 H +N + Sbjct: 113 -HRLNRSVEE 121 >gi|168037127|ref|XP_001771056.1| predicted protein [Physcomitrella patens subsp. patens] gi|162677589|gb|EDQ64057.1| predicted protein [Physcomitrella patens subsp. patens] Length = 820 Score = 43.2 bits (101), Expect = 0.030, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 47/121 (38%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP GSGK+ +A ++++ + F SN+ K+ + + Sbjct: 253 PPKGILLFGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 312 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + ++M A P S Sbjct: 313 APSIIFIDEIDSIAPKREKTQGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPA 372 Query: 155 L 155 L Sbjct: 373 L 373 Score = 39.7 bits (92), Expect = 0.39, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 526 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDVFDKA 582 >gi|209520410|ref|ZP_03269172.1| AAA ATPase central domain protein [Burkholderia sp. H160] gi|209499147|gb|EDZ99240.1| AAA ATPase central domain protein [Burkholderia sp. H160] Length = 437 Score = 43.2 bits (101), Expect = 0.030, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 18/130 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA + +D + + ++ S + D R+ V I + + T + Sbjct: 48 MILWGPPGVGKTTLARLMADAFHAEFIA--LSAVLSGVKDIREAVETAQIHRANGHQTLV 105 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N + + + A T S+ V L SR A V + Sbjct: 106 FVDEVHRFNKSQQDAFLPHVESGLFVFVGATTENPSFEVNSA-LLSR---AAVYVLKSLT 161 Query: 175 DDFLEKVIVK 184 DD +++ + Sbjct: 162 DDEQRELLER 171 >gi|332560168|ref|ZP_08414490.1| recombination factor protein RarA [Rhodobacter sphaeroides WS8N] gi|332277880|gb|EGJ23195.1| recombination factor protein RarA [Rhodobacter sphaeroides WS8N] Length = 437 Score = 43.2 bits (101), Expect = 0.030, Method: Composition-based stats. Identities = 36/208 (17%), Positives = 69/208 (33%), Gaps = 35/208 (16%) Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 S +IL GP G GK+ +A + + ++ A + D RK + Sbjct: 50 ASGSLSSLILWGPPGVGKTTIARLLAKETDLAFVQISAIFTG--VPDLRKVFEAAKLRRA 107 Query: 120 DFNDTQLF----HIINSIHQYD-------SSLLM---TARTFPVSWGVCLPDLCSRLKAA 165 + T LF H N Q ++L+ T L SR A Sbjct: 108 NGQGTLLFVDEIHRFNKAQQDGFLPHMEDGTILLVGATTENPSFELNAA---LMSR---A 161 Query: 166 TVVKISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 V+ + D + ++ R + +D +++ + LV+++ Sbjct: 162 QVIVL----DRLSLADLERLAQRAEHETGRALPLDGPAREALLEMADGDGRALLNLVEQV 217 Query: 220 DNLALSRGMGITR-SLAAEVLKETQQCD 246 +A + R LA +++ + D Sbjct: 218 --MAWKVKGPLDRDQLATRLMRRAAKYD 243 >gi|325336547|gb|ADZ12821.1| DNA polymerase III, gamma/tau subunits [Riemerella anatipestifer RA-GD] Length = 347 Score = 43.2 bits (101), Expect = 0.030, Method: Composition-based stats. Identities = 33/208 (15%), Positives = 64/208 (30%), Gaps = 46/208 (22%) Query: 64 SRVVILVGPSGSGKSCLANIWS----DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 ++ ++ GP G GK+ A I + +K +T + ++ + + ++DI L Sbjct: 39 AQALLFCGPRGVGKTTCARILARKINEKDGATSEDGFSYNIFELDAASNNS--VDDIREL 96 Query: 120 D----------------FNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCL------ 155 ++ + N+ L T P L Sbjct: 97 TDQVRYAPQVGKYKVYIIDEVHMLSSQAFNAF-------LKTLEEPPAHAIFILATTEKH 149 Query: 156 ---PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 P + SR + + ++ + K+ I + I Q+ + Sbjct: 150 KIIPTILSR---CQIYDFKRITIEDIQAHLRKIADKEGISYEDDALFLIAQKAD---GAL 203 Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLK 240 + D L IT + AAEVL Sbjct: 204 RDALSIFDRLVTFTQKNITLAKAAEVLN 231 >gi|319408738|emb|CBI82395.1| ATPase, AAA family [Bartonella schoenbuchensis R1] Length = 443 Score = 43.2 bits (101), Expect = 0.030, Method: Composition-based stats. Identities = 29/189 (15%), Positives = 66/189 (34%), Gaps = 33/189 (17%) Query: 54 RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPV 111 R+I+ S +I GP G+GK+ +A + + ++ + S I + + +K Sbjct: 47 RMIE---SGSFGSMIFWGPPGTGKTTIARLLALETNFAFEQVSAICTGVTEL----KKIF 99 Query: 112 LLEDIDLLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPD 157 + + T LF H N + + +L+ T Sbjct: 100 EVAQARFISGCRTLLFVDEIHRFNRAQQDVFLPFMEDGTVVLVGATTENPSFELNSA--- 156 Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQRMERSLVFAEK 214 L SR + ++ D +++K + + + +D +++ + A Sbjct: 157 LLSRAR-VLTFRLH---DSKSLNMLLKRAEEVEGKSLPLDDHARDLLIRMSDGDARAALT 212 Query: 215 LVDKMDNLA 223 L +++ A Sbjct: 213 LAEEIWRAA 221 >gi|315022325|gb|EFT35353.1| putative DNA polymerase III [Riemerella anatipestifer RA-YM] Length = 559 Score = 43.2 bits (101), Expect = 0.030, Method: Composition-based stats. Identities = 33/208 (15%), Positives = 64/208 (30%), Gaps = 46/208 (22%) Query: 64 SRVVILVGPSGSGKSCLANIWS----DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 ++ ++ GP G GK+ A I + +K +T + ++ + + ++DI L Sbjct: 39 AQALLFCGPRGVGKTTCARILARKINEKDGATSEDGFSYNIFELDAASNNS--VDDIREL 96 Query: 120 D----------------FNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCL------ 155 ++ + N+ L T P L Sbjct: 97 TDQVRYAPQVGKYKVYIIDEVHMLSSQAFNAF-------LKTLEEPPAHAIFILATTEKH 149 Query: 156 ---PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 P + SR + + ++ + K+ I + I Q+ + Sbjct: 150 KIIPTILSR---CQIYDFKRITIEDIQAHLRKIADKEGISYEDDALFLIAQKAD---GAL 203 Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLK 240 + D L IT + AAEVL Sbjct: 204 RDALSIFDRLVTFTQKNITLAKAAEVLN 231 >gi|242004678|ref|XP_002423206.1| 26S protease regulatory subunit 6A, putative [Pediculus humanus corporis] gi|212506177|gb|EEB10468.1| 26S protease regulatory subunit 6A, putative [Pediculus humanus corporis] Length = 381 Score = 43.2 bits (101), Expect = 0.030, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 68/201 (33%), Gaps = 38/201 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V+L GP G+GK+ LA + +++ST L + I ++ Sbjct: 161 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 220 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151 ++++D + + + ++N + ++ A Sbjct: 221 APAIIFIDELDAVGTKRFDSEKAGDREVQRTMLELLNQLDGFSSNADIKVIAATNRVDIL 280 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ P+++ +++ R++ + + + R Sbjct: 281 DPAL--LRSGRLD--RKIEFPHPNEEARARIMQ--IHSRKMNVSPDVNFEELSRSTDDFN 334 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 A+ ++ ++ T Sbjct: 335 GAQCKAVCVEAGMIALRRNAT 355 >gi|194708576|gb|ACF88372.1| unknown [Zea mays] Length = 418 Score = 43.2 bits (101), Expect = 0.030, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ +A + ++ +T L + I ++ + Sbjct: 198 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRD 249 >gi|164662339|ref|XP_001732291.1| hypothetical protein MGL_0066 [Malassezia globosa CBS 7966] gi|159106194|gb|EDP45077.1| hypothetical protein MGL_0066 [Malassezia globosa CBS 7966] Length = 446 Score = 43.2 bits (101), Expect = 0.030, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 51/128 (39%), Gaps = 19/128 (14%) Query: 65 RVVILVGPSGSGKSCLANIWSDKS----RSTRFSNIAKSLDSILIDTRKPVLLEDIDL-- 118 ++L GP GSGK+ LA + + ++ T F + S + + K ++ E ++ Sbjct: 91 PSMVLWGPPGSGKTTLARLLTREAITTTNHTPFRFVELSATTATANDVKRIVEEAVNRQM 150 Query: 119 LDFNDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 L T LF N + L+ A T S+ + L SRL+ Sbjct: 151 LTTQRTVLFIDEIQRFNRAQQDLFLPMLERGLITLLAATTENPSFRLQGA-LLSRLRVVV 209 Query: 167 VVKISLPD 174 + K+S D Sbjct: 210 LTKLSECD 217 >gi|192289525|ref|YP_001990130.1| IstB domain protein ATP-binding protein [Rhodopseudomonas palustris TIE-1] gi|192283274|gb|ACE99654.1| IstB domain protein ATP-binding protein [Rhodopseudomonas palustris TIE-1] Length = 242 Score = 43.2 bits (101), Expect = 0.030, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 48/115 (41%), Gaps = 22/115 (19%) Query: 64 SRVVILVGPSGSGKSCLANIWS-------DKSRSTRFSNIAKSLDSILIDTRKPVLLE-- 114 R V+L+G +G+GK+ LA + + R ++ L++ R+ L + Sbjct: 98 QRNVVLIGGTGTGKTHLAIAIARNCIRAGARGRFFTTVDLVNRLEAEARSGRQARLADYL 157 Query: 115 -DIDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 +D + ++ LFH+I+ +++ +S+++T W D Sbjct: 158 TRLDFIILDELGYLPFAQAGGQLLFHLISRLYER-TSIIVTTNLAFGEWPTVFGD 211 >gi|125554262|gb|EAY99867.1| hypothetical protein OsI_21861 [Oryza sativa Indica Group] Length = 415 Score = 43.2 bits (101), Expect = 0.030, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ +A + ++ +T L + I ++ + Sbjct: 195 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRD 246 >gi|82751226|ref|YP_416967.1| recombination factor protein RarA [Staphylococcus aureus RF122] gi|82656757|emb|CAI81186.1| probable ATPase [Staphylococcus aureus RF122] Length = 424 Score = 43.2 bits (101), Expect = 0.030, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 66/171 (38%), Gaps = 31/171 (18%) Query: 67 VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKS-------LDSILIDTRKPVLLEDID 117 +I GP G GK+ +A S + + + + + + ++ + + +LL++I Sbjct: 43 MIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKDMQFVVEEAKMSGQVILLLDEIH 102 Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 L D L H+ N +L+ T + P + SR A + ++ Sbjct: 103 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELYPL 151 Query: 174 DDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 +D+ + + + + D Q ID+ AY + + + A ++ Sbjct: 152 NDEDVRQALTRAIEDEENGLKTYQPKIDEDAMAYFSTQSQGDVRSALNALE 202 >gi|322372274|ref|ZP_08046815.1| cell division control protein 48 [Haladaptatus paucihalophilus DX253] gi|320548283|gb|EFW89956.1| cell division control protein 48 [Haladaptatus paucihalophilus DX253] Length = 740 Score = 43.2 bits (101), Expect = 0.031, Method: Composition-based stats. Identities = 23/163 (14%), Positives = 62/163 (38%), Gaps = 33/163 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P + V+L GP G+GK+ LA ++++ ++ FS + + + Sbjct: 222 PPQGVLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDAAEE 281 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + ++++D + QL +++ + +++ A S Sbjct: 282 SPSIIFIDELDSIAPKREDVTGEVERRVVAQLLTMMDGLEARGQVIVIAATNRVDS---V 338 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L + ++I +PD++ +++ R + + + Sbjct: 339 DPALRRPGRFDREIEIGVPDEEGRTEILQ--IHTRGMPLSDDV 379 Score = 39.7 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 37/217 (17%), Positives = 72/217 (33%), Gaps = 55/217 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106 P V+L GP G+GK+ +A ++++ + S I ++ Sbjct: 495 PPSGVLLYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKARQV 554 Query: 107 TRKPVLLEDIDLLD---FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 + + +++D L + QL ++ + +++ A P Sbjct: 555 SPTVIFFDELDSLAPGRGQEVGSNVSERVVNQLLTELDGLEDKGDVMVIGATNRPDMIDP 614 Query: 154 CLPDLCS----RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209 L + S RL V I PD++ E+++ D + D L R L Sbjct: 615 AL--IRSGRFDRL-----VMIGQPDEEGREQILKIHTEDSPLAPDVSL---------REL 658 Query: 210 VFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 D +++R I E L+E + Sbjct: 659 AEMTDGYVGSDLESIAREAAI------EALREDDDAE 689 >gi|313150350|dbj|BAJ39942.1| hypothetical protein [Terrabacter sp. DBF63] Length = 156 Score = 43.2 bits (101), Expect = 0.031, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 42/114 (36%), Gaps = 20/114 (17%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKS----------------RSTRFSNIAKSLDSIL-- 104 P R + + GPSG+GK+ + K+ + + + S+ +L Sbjct: 3 PRRNLAISGPSGTGKTHFVEALAHKAIDEGMRVSWFTLESLTTAIGRAAVDGSISKVLAK 62 Query: 105 IDTRKPVLLEDIDLLDFNDTQLFHIINSIHQ--YDSSLLMTARTFPVSWGVCLP 156 I + V+++DI +L + SL +T+ P + +P Sbjct: 63 ITRAELVVVDDIGMLPSGQAAAEAFYRLVDATYERRSLAVTSNIHPAGYDTIMP 116 >gi|225718536|gb|ACO15114.1| 26S protease regulatory subunit 6A [Caligus clemensi] Length = 428 Score = 43.2 bits (101), Expect = 0.031, Method: Composition-based stats. Identities = 28/202 (13%), Positives = 66/202 (32%), Gaps = 38/202 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + +L GP G+GK+ LA + ++ ST L + I ++ Sbjct: 208 PPKGALLYGPPGTGKTLLARACAAQTNSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 267 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151 ++++D + + ++N + D ++ A Sbjct: 268 APAIIFIDELDAIGTERFDSEKAGDREVQRTMLELLNQLDGFSSSDDIKVIAATNRVDIL 327 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ P ++ +++ R++ I ++ + R Sbjct: 328 DPAL--LRSGRLD--RKIEFPAPTEEARARIMQ--IHSRKMNISGEVNFDELARSTDDFN 381 Query: 211 FAEKLVDKMDNLALSRGMGITR 232 A+ ++ ++ T Sbjct: 382 GAQCKAVCVEAGMIALRREATI 403 >gi|15678755|ref|NP_275871.1| proteasome-activating nucleotidase [Methanothermobacter thermautotrophicus str. Delta H] gi|3122631|sp|O26824|PAN_METTH RecName: Full=Proteasome-activating nucleotidase; Short=PAN; AltName: Full=Proteasomal ATPase; AltName: Full=Proteasome regulatory ATPase; AltName: Full=Proteasome regulatory particle gi|2621817|gb|AAB85233.1| ATP-dependent 26S protease regulatory subunit 4 [Methanothermobacter thermautotrophicus str. Delta H] Length = 410 Score = 43.2 bits (101), Expect = 0.031, Method: Composition-based stats. Identities = 25/177 (14%), Positives = 64/177 (36%), Gaps = 42/177 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V+L GP G+GK+ LA + ++ +T +A I ++ Sbjct: 184 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIKIVASEFVRKYIGEGARLVRGVFELAKEK 243 Query: 113 ------LEDIDLLD---------FNDT------QLFHIINSIHQYDSSLLMTARTFPVSW 151 +++ID + + QL ++ + ++ A P Sbjct: 244 SPSIIFIDEIDAVAAKRLKSSTSGDREVQRTLMQLLAELDGFESRGNVGIVAATNRPDIL 303 Query: 152 GVCLPDLCSRLKAA---TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 L L+ +++ LP++D +++ + + + +++ ++ R+ Sbjct: 304 DPAL------LRPGRFDRFIEVPLPNEDGRREILKIHTS--GMALAEEVDIELLARI 352 >gi|329848354|ref|ZP_08263382.1| C4-dicarboxylate transport transcriptional regulatory protein dctD [Asticcacaulis biprosthecum C19] gi|328843417|gb|EGF92986.1| C4-dicarboxylate transport transcriptional regulatory protein dctD [Asticcacaulis biprosthecum C19] Length = 403 Score = 43.2 bits (101), Expect = 0.031, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 4/91 (4%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTR---FSNIAKSLDSILIDTRKPVLLEDIDLLD-FN 122 V+L G +G+GK+ A + +S A + + +L+E+ID L Sbjct: 166 VLLTGEAGTGKTLAAMAFHRQSGRANLTCVEASALTAGDLDDMANTTLLVENIDRLGEGQ 225 Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 L ++ +++S L+ T+ G+ Sbjct: 226 GPALLAWLHRAPRHNSRLIATSTRPRAELGL 256 >gi|225568918|ref|ZP_03777943.1| hypothetical protein CLOHYLEM_04997 [Clostridium hylemonae DSM 15053] gi|225162417|gb|EEG75036.1| hypothetical protein CLOHYLEM_04997 [Clostridium hylemonae DSM 15053] Length = 445 Score = 43.2 bits (101), Expect = 0.031, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 55/161 (34%), Gaps = 27/161 (16%) Query: 39 SRDDL-----LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRF 93 S DD L+ +LID +I GP G GK+ LA I + ++++ Sbjct: 25 SLDDFAGQEHLLGPG-RLLRQLIDKDQ---ISSMIFWGPPGVGKTTLARIIARRTKADFI 80 Query: 94 SNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLF----HIINSIH--------QYDSSLL 141 A + I + D T +F H N + S +L Sbjct: 81 DFSAVTSGIKEIKEVMSKA--EKDRHAGIRTLVFVDEIHRFNKAQQDAFLPYVEKGSIIL 138 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 + A T S+ + L SR V + + L +++ Sbjct: 139 IGATTENPSFEINAA-LLSR---CKVFVLQALTEKDLLRLL 175 >gi|312075254|ref|XP_003140335.1| AAA ATPase [Loa loa] gi|307764496|gb|EFO23730.1| AAA ATPase [Loa loa] Length = 353 Score = 43.2 bits (101), Expect = 0.031, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 49/140 (35%), Gaps = 41/140 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL------------DSILIDTRK- 109 P + V+L GP G GK+ LA I + + + + SL D++ +K Sbjct: 121 PPKGVLLYGPPGCGKTLLAKIIARAANARFINLQVSSLCDKWYGESQKLADAVFSVAQKF 180 Query: 110 ---PVLLEDIDLLDFNDTQLFH------------IINSIHQYDSSLLMTA---------- 144 + +++ID + H + + D ++++ Sbjct: 181 QPTIIFIDEIDSFLRDRNTQDHEATAMMKAQFMCLWDGFASSDDAIIVLGATNRPNDVDS 240 Query: 145 ---RTFPVSWGVCLPDLCSR 161 R P + V LP L SR Sbjct: 241 AILRRMPARFYVPLPSLESR 260 >gi|241663732|ref|YP_002982092.1| recombination factor protein RarA [Ralstonia pickettii 12D] gi|240865759|gb|ACS63420.1| AAA ATPase central domain protein [Ralstonia pickettii 12D] Length = 449 Score = 43.2 bits (101), Expect = 0.031, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 64/187 (34%), Gaps = 21/187 (11%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS-------------NIAKSLDSILIDTRKPVLL 113 +IL GP G GK+ LA + ++ + + + ++ R V + Sbjct: 54 MILWGPPGVGKTTLARLMANAFDAEFIALSAVLSGVKDIREAVERAEQFRANGRRTLVFV 113 Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 +++ + + F + + A T S+ V L SR A V + Sbjct: 114 DEVHRFNKSQQDAFLPH---VESGLFTFIGATTENPSFEVNGA-LLSR---AAVYVLKSL 166 Query: 174 DDDFLEKVIVKMFAD-RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232 DD L+++ + + + IV + V+ + A S+ G T Sbjct: 167 SDDELKQLAERARQELGGLEWTPAALDAIVASADGDGRKLLNNVEIVTRAARSQAEGDTV 226 Query: 233 SLAAEVL 239 + E L Sbjct: 227 PVIDEAL 233 >gi|56421126|ref|YP_148444.1| Holliday junction DNA helicase RuvB [Geobacillus kaustophilus HTA426] gi|81819658|sp|Q5KWR0|RUVB_GEOKA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|56380968|dbj|BAD76876.1| holliday junction DNA helicase [Geobacillus kaustophilus HTA426] Length = 333 Score = 43.2 bits (101), Expect = 0.031, Method: Composition-based stats. Identities = 48/209 (22%), Positives = 81/209 (38%), Gaps = 43/209 (20%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G GK+ LA I +++ + +L+ LE D+L ++ Sbjct: 56 VLLYGPPGLGKTTLAVIIANEMGVKLRATSGPALERPGDLAALLTSLEPGDVLFIDEI-- 113 Query: 127 FHIINSIHQY--------------------DSSL--------LMTARTFPVSWGVCLPD- 157 H + + +L L+ A T + L D Sbjct: 114 -HRLPRAVEEVLYPAMEDYCLDITIGKGPDARTLRLDLPPFTLVGATTRAGALSAPLRDR 172 Query: 158 --LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215 + SRL+ V D L ++I + A QI I+++ A + +R + A +L Sbjct: 173 FGVISRLEYYHV--------DQLAQIIERAAAILQIGIEREAALELARRARGTPRIANRL 224 Query: 216 VDKMDNLALSRG-MGITRSLAAEVLKETQ 243 + ++ + A RG GIT LA E L+ Q Sbjct: 225 LRRVRDFAQVRGEGGITLPLAVEALERLQ 253 >gi|126461163|ref|YP_001042277.1| recombination factor protein RarA [Rhodobacter sphaeroides ATCC 17029] gi|221638141|ref|YP_002524403.1| recombination factor protein RarA [Rhodobacter sphaeroides KD131] gi|126102827|gb|ABN75505.1| Recombination protein MgsA [Rhodobacter sphaeroides ATCC 17029] gi|221158922|gb|ACL99901.1| Recombination protein MgsA [Rhodobacter sphaeroides KD131] Length = 437 Score = 43.2 bits (101), Expect = 0.031, Method: Composition-based stats. Identities = 37/204 (18%), Positives = 71/204 (34%), Gaps = 27/204 (13%) Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 S +IL GP G GK+ +A + + ++ A + D RK + Sbjct: 50 ASGSLSSLILWGPPGVGKTTIARLLAKETDLAFVQISAIFTG--VPDLRKVFEAAKLRRA 107 Query: 120 DFNDTQLF----HIINSIHQYD-------SSLLM---TARTFPVSWGVCLPDLCSRLKAA 165 + T LF H N Q ++L+ T L SR A Sbjct: 108 NGQGTLLFVDEIHRFNKAQQDGFLPHMEDGTILLVGATTENPSFELNAA---LMSR---A 161 Query: 166 TVVKISLPDDDFLEKVIVKMFAD--RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 V+ + LE++ + + R + +D +++ + LV+++ +A Sbjct: 162 QVIVLERLSLADLERLAQRAEHETGRALPLDGPAREALLEMADGDGRALLNLVEQV--MA 219 Query: 224 LSRGMGITR-SLAAEVLKETQQCD 246 + R LA +++ + D Sbjct: 220 WKVKGPLDRDQLATRLMRRAAKYD 243 >gi|192289465|ref|YP_001990070.1| IstB domain protein ATP-binding protein [Rhodopseudomonas palustris TIE-1] gi|192283214|gb|ACE99594.1| IstB domain protein ATP-binding protein [Rhodopseudomonas palustris TIE-1] Length = 287 Score = 43.2 bits (101), Expect = 0.031, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 49/110 (44%), Gaps = 22/110 (20%) Query: 64 SRVVILVGPSGSGKSCLANIWS-------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 R V+L+G +G+GK+ LA + ++R ++ L++ + ++ + E + Sbjct: 98 QRNVVLIGGTGTGKTHLAIAIARNCIRAGARARFYNVVDLVNRLETEARNGKQGQIAEHL 157 Query: 117 ---DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 D + ++ LFH+I+ +++ +S+++T W Sbjct: 158 TRMDFVVLDELGYLPFAQAGGQLLFHLISRLYER-TSIIVTTNLAFGEWP 206 >gi|114766529|ref|ZP_01445486.1| putative transposase [Pelagibaca bermudensis HTCC2601] gi|114541219|gb|EAU44270.1| putative transposase [Roseovarius sp. HTCC2601] Length = 652 Score = 43.2 bits (101), Expect = 0.031, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 68/162 (41%), Gaps = 24/162 (14%) Query: 14 DKQKNDQPKNKEEQLFFS-FPRCLGISRDDLLVHSAIEQAVR-LIDSWPSWPSRVVILVG 71 + Q ++ + Q+ + P ++ D E VR L+ + R V+L+G Sbjct: 456 AEINEKQARSIKYQMTIAKLPLAKEVNEFDFEETPVNETLVRVLVSAEFLEQQRNVVLIG 515 Query: 72 PSGSGKSCLANIWSD-------KSRSTRFSNIAKSLDSILIDTRKP-----------VLL 113 +G+GKS LA + + R ++ LD+ D R+ V+L Sbjct: 516 GTGTGKSHLAVGIARACIRSGKRGRFFNVVDLVNKLDAEARDDRQGRIADLLCRMDFVIL 575 Query: 114 EDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWG 152 +++ L F T LFH+I+ +++ +S+++T W Sbjct: 576 DELGYLPFAQTGGQLLFHLISRLYER-TSIIVTTNLDFGEWP 616 >gi|114767638|ref|ZP_01446357.1| putative transposase [Pelagibaca bermudensis HTCC2601] gi|114540342|gb|EAU43434.1| putative transposase [Roseovarius sp. HTCC2601] Length = 652 Score = 43.2 bits (101), Expect = 0.031, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 68/162 (41%), Gaps = 24/162 (14%) Query: 14 DKQKNDQPKNKEEQLFFS-FPRCLGISRDDLLVHSAIEQAVR-LIDSWPSWPSRVVILVG 71 + Q ++ + Q+ + P ++ D E VR L+ + R V+L+G Sbjct: 456 AEINEKQARSIKYQMTIAKLPLAKEVNEFDFEETPVNETLVRVLVSAEFLEQQRNVVLIG 515 Query: 72 PSGSGKSCLANIWSD-------KSRSTRFSNIAKSLDSILIDTRKP-----------VLL 113 +G+GKS LA + + R ++ LD+ D R+ V+L Sbjct: 516 GTGTGKSHLAVGIARACIRSGKRGRFFNVVDLVNKLDAEARDDRQGRIADLLCRMDFVIL 575 Query: 114 EDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWG 152 +++ L F T LFH+I+ +++ +S+++T W Sbjct: 576 DELGYLPFAQTGGQLLFHLISRLYER-TSIIVTTNLDFGEWP 616 >gi|73961501|ref|XP_537239.2| PREDICTED: similar to Nuclear valosin-containing protein-like (Nuclear VCP-like protein) (NVLp) [Canis familiaris] Length = 955 Score = 43.2 bits (101), Expect = 0.031, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 57/167 (34%), Gaps = 42/167 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS----------------LDSILID 106 P R V+L GP G GK+ LA+ + + A + + + Sbjct: 364 PPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAATEVVSGVSGESEQKLRELFEQAVSN 423 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151 + +++ID + QL + N+ L++ A P S Sbjct: 424 APCVLFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNTTAATARVLVIGATNRPDSL 483 Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDK 195 L +A + + +PD+ E+++ + R++ + + Sbjct: 484 DPALR------RAGRFDREICLGIPDEASRERILQTLC--RKLRLPE 522 >gi|302425218|sp|D4GUJ7|PAN1_HALVD RecName: Full=Proteasome-activating nucleotidase 1; Short=PAN 1; AltName: Full=Proteasomal ATPase 1; AltName: Full=Proteasome regulatory ATPase 1; AltName: Full=Proteasome regulatory particle 1 gi|54694989|gb|AAV38126.1| proteasome-activating nucleotidase A [Haloferax volcanii DS2] Length = 406 Score = 43.2 bits (101), Expect = 0.031, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 29/64 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P V+L GP G+GK+ LA ++++ ++ L I ++ + ++ N Sbjct: 183 PPSGVLLYGPPGTGKTMLAKAVANQTNASFIKMAGSELVHKFIGEGAKLVRDLFEVAREN 242 Query: 123 DTQL 126 + + Sbjct: 243 EPAV 246 >gi|115466690|ref|NP_001056944.1| Os06g0173100 [Oryza sativa Japonica Group] gi|55773703|dbj|BAD72286.1| putative 26S proteasome regulatory particle triple-A ATPase subunit5a [Oryza sativa Japonica Group] gi|113594984|dbj|BAF18858.1| Os06g0173100 [Oryza sativa Japonica Group] Length = 429 Score = 43.2 bits (101), Expect = 0.031, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ +A + ++ +T L + I ++ + Sbjct: 209 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRD 260 >gi|15643274|ref|NP_228318.1| recombination factor protein RarA/unknown domain fusion protein [Thermotoga maritima MSB8] gi|20178177|sp|Q9WYX8|Y508_THEMA RecName: Full=UPF0189 protein TM_0508 gi|4981020|gb|AAD35593.1|AE001727_5 conserved hypothetical protein [Thermotoga maritima MSB8] Length = 599 Score = 43.2 bits (101), Expect = 0.031, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 74/176 (42%), Gaps = 25/176 (14%) Query: 68 ILVGPSGSGKS----CLANIWSDK--------SRSTRFSNIAKSLDSILIDTRKPVL-LE 114 IL GP GSGK+ L ++ + + N+ K + + +K +L L+ Sbjct: 46 ILYGPPGSGKTSVFSLLKRYFNGEVVYLSSTVHGVSEIKNVLKRGEQLRKYGKKLLLFLD 105 Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 +I L+ N + +++ + + D L+ T P V +P L SR ++ Sbjct: 106 EIHRLNKNQQMV--LVSHVERGDIVLVATTTENPSF--VIVPALLSR---CRILYFKKLS 158 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD--NLALSRGM 228 D+ L K++ K I +++ + IV+ E A KL++ ++ + A Sbjct: 159 DEDLMKILKKATEVLNIDLEESVEKAIVRHSE---GDARKLLNTLEIVHQAFKNKR 211 >gi|322491749|emb|CBZ27022.1| putative proteasome regulatory ATPase subunit 1 [Leishmania mexicana MHOM/GT/2001/U1103] Length = 437 Score = 43.2 bits (101), Expect = 0.032, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA ++++ +T I L I ++ E Sbjct: 214 PPKGVLLYGPPGTGKTLLAKAVANRTDATFIRVIGSELVQRYIGEGARMIRE 265 >gi|304436891|ref|ZP_07396855.1| replication-associated recombination protein A [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370090|gb|EFM23751.1| replication-associated recombination protein A [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 447 Score = 43.2 bits (101), Expect = 0.032, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 60/173 (34%), Gaps = 28/173 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I GP G GK+ LA I + ++++ FS + + I ++ D + Sbjct: 55 MIFWGPPGVGKTTLAQIIAARTKAEFITFSAVTSGIKEIRTVMQEA----DRRRMYGERI 110 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +F H N + S +L+ A T S+ + L SR V + Sbjct: 111 VVFVDEIHRFNKAQQDAFLPFVEKGSIVLIGATTENPSFEINNA-LLSR---CRVFVLQG 166 Query: 173 PDDDFLEKVIVKMFA-DRQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKM 219 + +E ++ A DR++ + + A ++ + Sbjct: 167 LTEADIEHLLRHAIATDRELSQMHIHLSDDGITAVAAFANGDARSALSTLEML 219 >gi|288939849|ref|YP_003442089.1| AAA ATPase central domain-containing protein [Allochromatium vinosum DSM 180] gi|288895221|gb|ADC61057.1| AAA ATPase central domain protein [Allochromatium vinosum DSM 180] Length = 435 Score = 43.2 bits (101), Expect = 0.032, Method: Composition-based stats. Identities = 34/188 (18%), Positives = 67/188 (35%), Gaps = 27/188 (14%) Query: 58 SWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID 117 ++ S + +IL GP G GK+ LA + + ++ + F ++ + E Sbjct: 41 AFQSGQAHSMILWGPPGVGKTTLARL-TAQAFAGEFIALSAVFAGVKDIRAAMEQAEH-H 98 Query: 118 LLDFNDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 T LF H N + L+ A T S+ V L SR A Sbjct: 99 RSRGRRTILFVDEIHRFNKAQQDALLPYVESGLVTLIGATTENPSFEVNAA-LLSR---A 154 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQ----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 V + D L +++++ A Q + D ++ + A + ++ ++ Sbjct: 155 QVYVLQSLTDAELRQLLMR--ARDQVLTHLQFDAAAVDTLIGYAD---GDARRCLNLLEQ 209 Query: 222 LALSRGMG 229 ++ G Sbjct: 210 CHIAAGTA 217 >gi|226941287|ref|YP_002796361.1| recombination factor protein RarA [Laribacter hongkongensis HLHK9] gi|226716214|gb|ACO75352.1| recombination factor protein RarA [Laribacter hongkongensis HLHK9] Length = 442 Score = 43.2 bits (101), Expect = 0.032, Method: Composition-based stats. Identities = 28/171 (16%), Positives = 58/171 (33%), Gaps = 26/171 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST-------------RFSNIAKSLDSILIDTRKPVLL 113 +IL GP G GK+ LA I + + + ++ + + + Sbjct: 52 MILWGPPGVGKTTLARILAHAFDAEFTPLSAVFSGVKDIREAVERAQMAAARGRHTILFV 111 Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 +++ + + F + + A T S+ V L SR A V + Sbjct: 112 DEVHRFNKSQQDAFLPF---VEAGLFTFIGATTENPSFEVNAA-LLSR---AQVYVLKPL 164 Query: 174 DDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 D LE + V+ A + +D A + + A + ++ ++ Sbjct: 165 TDADLEALFVRAQAAGVLEGLELDAAARAVLAGYAD---GDARRFLNLLEQ 212 >gi|255542742|ref|XP_002512434.1| 26S protease regulatory subunit 6a, putative [Ricinus communis] gi|223548395|gb|EEF49886.1| 26S protease regulatory subunit 6a, putative [Ricinus communis] Length = 429 Score = 43.2 bits (101), Expect = 0.032, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ +A + ++ +T L + I ++ + Sbjct: 203 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRD 254 >gi|146086546|ref|XP_001465575.1| proteasome regulatory ATPase subunit 1 [Leishmania infantum JPCM5] gi|134069674|emb|CAM67998.1| putative proteasome regulatory ATPase subunit 1 [Leishmania infantum JPCM5] gi|322499017|emb|CBZ34089.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 437 Score = 43.2 bits (101), Expect = 0.032, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA ++++ +T I L I ++ E Sbjct: 214 PPKGVLLYGPPGTGKTLLAKAVANRTDATFIRVIGSELVQRYIGEGARMIRE 265 >gi|154337475|ref|XP_001564970.1| proteasome regulatory ATPase subunit 1 [Leishmania braziliensis MHOM/BR/75/M2904] gi|134062009|emb|CAM45095.1| putative proteasome regulatory ATPase subunit 1 [Leishmania braziliensis MHOM/BR/75/M2904] Length = 437 Score = 43.2 bits (101), Expect = 0.032, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA ++++ +T I L I ++ E Sbjct: 214 PPKGVLLYGPPGTGKTLLAKAVANRTDATFIRVIGSELVQRYIGEGARMIRE 265 >gi|159037439|ref|YP_001536692.1| recombination factor protein RarA [Salinispora arenicola CNS-205] gi|157916274|gb|ABV97701.1| AAA ATPase central domain protein [Salinispora arenicola CNS-205] Length = 502 Score = 43.2 bits (101), Expect = 0.032, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 61/157 (38%), Gaps = 28/157 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRK---------PVL 112 VIL GP GSGK+ +A++ + + + K + +++ R+ + Sbjct: 74 VILWGPPGSGKTTIAHLVAGATDRRFVAMSALNAGVKDVRAVIEAARRQRRTGGPPTVLF 133 Query: 113 LEDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 ++++ L + + + L+ A T + V P L SR ++ + Sbjct: 134 IDEVHRFSKTQQDSLL----AAVEDRTVTLLAATTENPYFSVISP-LLSR---CVLLTLQ 185 Query: 172 LPDDDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQ 203 DDD + ++ + D R + + ++V+ Sbjct: 186 PLDDDAVRSLLRRAVVDGRGLGGTPALAPDAEEHLVR 222 >gi|157869313|ref|XP_001683208.1| proteasome regulatory ATPase subunit 1 [Leishmania major strain Friedlin] gi|68224092|emb|CAJ04186.1| putative proteasome regulatory ATPase subunit 1 [Leishmania major strain Friedlin] Length = 437 Score = 43.2 bits (101), Expect = 0.032, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA ++++ +T I L I ++ E Sbjct: 214 PPKGVLLYGPPGTGKTLLAKAVANRTDATFIRVIGSELVQRYIGEGARMIRE 265 >gi|72391158|ref|XP_845873.1| proteasome regulatory ATPase subunit 1 [Trypanosoma brucei TREU927] gi|9651733|gb|AAF91243.1|AF227499_1 proteasome regulatory ATPase subunit 1 [Trypanosoma brucei] gi|62175505|gb|AAX69645.1| proteasome regulatory ATPase subunit 1 [Trypanosoma brucei] gi|70802409|gb|AAZ12314.1| proteasome regulatory ATPase subunit 1 [Trypanosoma brucei brucei strain 927/4 GUTat10.1] gi|261329341|emb|CBH12322.1| proteasome regulatory ATPase subunit 1 [Trypanosoma brucei gambiense DAL972] Length = 437 Score = 43.2 bits (101), Expect = 0.032, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA ++++ +T I L I ++ E Sbjct: 214 PPKGVLLYGPPGTGKTLLAKAVANRTDATFIRVIGSELVQRYIGEGARMIRE 265 >gi|74213878|dbj|BAE29367.1| unnamed protein product [Mus musculus] Length = 351 Score = 43.2 bits (101), Expect = 0.032, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + V++ GP G+GK+ LA + ++++T L + I L+ D L Sbjct: 222 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFI-GDGAKLVRDAFALAKE 280 Query: 123 DT 124 + Sbjct: 281 EA 282 >gi|328951016|ref|YP_004368351.1| AAA ATPase central domain protein [Marinithermus hydrothermalis DSM 14884] gi|328451340|gb|AEB12241.1| AAA ATPase central domain protein [Marinithermus hydrothermalis DSM 14884] Length = 431 Score = 43.2 bits (101), Expect = 0.032, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 44/133 (33%), Gaps = 18/133 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA + + R+ A + + T L Sbjct: 47 MILWGPPGVGKTTLARVLAQGVRAEFIPLSAVAAGVKEVREAVARAE--AAARVGRRTVL 104 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N + L+ A T S+ V P L SR A V + + Sbjct: 105 FLDEVHRFNKAQQDALLPHVESGLLTLIGATTENPSFEVN-PALRSR---ARVYVLKPLE 160 Query: 175 DDFLEKVIVKMFA 187 L +V+ + Sbjct: 161 KADLLRVLQRALE 173 >gi|292655013|ref|YP_003534910.1| proteasome-activating nucleotidase A [Haloferax volcanii DS2] gi|291372419|gb|ADE04646.1| proteasome-activating nucleotidase A [Haloferax volcanii DS2] Length = 405 Score = 43.2 bits (101), Expect = 0.032, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 29/64 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P V+L GP G+GK+ LA ++++ ++ L I ++ + ++ N Sbjct: 182 PPSGVLLYGPPGTGKTMLAKAVANQTNASFIKMAGSELVHKFIGEGAKLVRDLFEVAREN 241 Query: 123 DTQL 126 + + Sbjct: 242 EPAV 245 >gi|261420121|ref|YP_003253803.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y412MC61] gi|319766933|ref|YP_004132434.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y412MC52] gi|261376578|gb|ACX79321.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y412MC61] gi|317111799|gb|ADU94291.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y412MC52] Length = 250 Score = 43.2 bits (101), Expect = 0.032, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 24/125 (19%) Query: 67 VILVGPSGSGKSCLANI----WSDKSRSTRFSNIAKSLDSILIDTRKPVL------LEDI 116 V+L+G G+GK+ LA ++ RF +A + + + +L ++ Sbjct: 96 VLLLGSPGTGKTHLATALGLKACERGHEVRFFRVADLVAQLEEALKDGILGRLKRQIDTC 155 Query: 117 DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 +LL ++ LFHII ++ S+++T+ W D +RL AA Sbjct: 156 ELLILDELGYVPFQKQGSELLFHIIADCYER-KSVIVTSNLEFGQWNRVFGD--NRLTAA 212 Query: 166 TVVKI 170 V ++ Sbjct: 213 LVDRL 217 >gi|217967181|ref|YP_002352687.1| ATPase AAA [Dictyoglomus turgidum DSM 6724] gi|217336280|gb|ACK42073.1| AAA ATPase central domain protein [Dictyoglomus turgidum DSM 6724] Length = 431 Score = 43.2 bits (101), Expect = 0.032, Method: Composition-based stats. Identities = 35/202 (17%), Positives = 73/202 (36%), Gaps = 37/202 (18%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I+ GP GSGK+ L+ + + + A + + +++L + T Sbjct: 52 PSLIIYGPPGSGKTTLSVLLAKAINAEFIELNAAIVGVQELKEALQKAKRNLELYNKR-T 110 Query: 125 QLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N + + +L+ T S L SR +V++ Sbjct: 111 VLFLDEIHHFNKLQQDVLLPFVERGIMILIGATTENPFFSLNTT---LLSR---CRLVEL 164 Query: 171 SLPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + +E++I + D R + I++ IV+ A ++ ++ + Sbjct: 165 KPLSKENIERIIKRALEDKERGLGERDLEINEDAMEEIVRFAN---GDARIALNTLELAS 221 Query: 224 LS------RGMGITRSLAAEVL 239 + ITR++ EV+ Sbjct: 222 FMVAPSENGKLIITRNIVKEVI 243 >gi|119897658|ref|YP_932871.1| recombination factor protein RarA [Azoarcus sp. BH72] gi|119670071|emb|CAL93984.1| conserved hypothetical protein [Azoarcus sp. BH72] Length = 445 Score = 43.2 bits (101), Expect = 0.032, Method: Composition-based stats. Identities = 42/194 (21%), Positives = 71/194 (36%), Gaps = 29/194 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA + + + + A S + D R+ ++ T L Sbjct: 52 MILWGPPGVGKTTLARLMAKGFDAEFVALSAVF--SGVKDIREAIVQAQAAKARGRHTIL 109 Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 F H N Q D+ L L+T A T S+ V L SR A V + Sbjct: 110 FVDEVHRFNKAQQ-DAFLPYVEQGLVTFIGATTENPSFEVNSA-LLSR---AAVYVLEPL 164 Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQ-RM----ERSLVFAEKLVDKMDNLALSRG- 227 D + ++ + + R + + + RM + L++++ A + G Sbjct: 165 DTEAMQGLFERA---RSLACPDLVFEEAARERMIGFADGDARRLMNLIEQIQVAAETAGV 221 Query: 228 MGITRSLAAEVLKE 241 +T E L Sbjct: 222 APVTADFVDEALSR 235 >gi|15228991|ref|NP_191228.1| CIP111 (CAM INTERACTING PROTEIN 111); ATPase/ calmodulin binding [Arabidopsis thaliana] gi|9662988|emb|CAC00732.1| calmodulin-binding protein [Arabidopsis thaliana] gi|332646031|gb|AEE79552.1| Cam interacting protein 111 [Arabidopsis thaliana] Length = 1022 Score = 43.2 bits (101), Expect = 0.032, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 47/121 (38%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSR------------STRFSNIAKSLDSILIDTRKP 110 P++ V++ GP G+GK+ LA ++ S S K+LD + Sbjct: 417 PTKGVLIHGPPGTGKTSLARTFARHSGVNFFSVNGPEIISQYLGESEKALDEVFRSASNA 476 Query: 111 ----VLLEDIDLLD-----FNDT-------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 V ++D+D + + L ++++ I + D +++ A P S Sbjct: 477 TPAVVFIDDLDAIAPARKEGGEELSQRMVATLLNLMDGISRTDGVVVIAATNRPDSIEPA 536 Query: 155 L 155 L Sbjct: 537 L 537 >gi|297265754|ref|XP_002799248.1| PREDICTED: spastin-like [Macaca mulatta] Length = 596 Score = 43.2 bits (101), Expect = 0.032, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 30/50 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S +T F+ A SL S + + ++ Sbjct: 344 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 393 >gi|261418394|ref|YP_003252076.1| Holliday junction DNA helicase RuvB [Geobacillus sp. Y412MC61] gi|319767647|ref|YP_004133148.1| Holliday junction DNA helicase RuvB [Geobacillus sp. Y412MC52] gi|261374851|gb|ACX77594.1| Holliday junction DNA helicase RuvB [Geobacillus sp. Y412MC61] gi|317112513|gb|ADU95005.1| Holliday junction DNA helicase RuvB [Geobacillus sp. Y412MC52] Length = 333 Score = 43.2 bits (101), Expect = 0.032, Method: Composition-based stats. Identities = 48/209 (22%), Positives = 81/209 (38%), Gaps = 43/209 (20%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G GK+ LA I +++ + +L+ LE D+L ++ Sbjct: 56 VLLYGPPGLGKTTLAVIIANEMGVKLRATSGPALERPGDLAALLTSLEPGDVLFIDEI-- 113 Query: 127 FHIINSIHQY--------------------DSSL--------LMTARTFPVSWGVCLPD- 157 H + + +L L+ A T + L D Sbjct: 114 -HRLPRAVEEVLYPAMEDYCLDIAIGKGPDARTLRLDLPPFTLVGATTRAGALSAPLRDR 172 Query: 158 --LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215 + SRL+ V D L ++I + A QI I+++ A + +R + A +L Sbjct: 173 FGVISRLEYYHV--------DQLAQIIERAAAILQIGIEREAALELARRARGTPRIANRL 224 Query: 216 VDKMDNLALSRG-MGITRSLAAEVLKETQ 243 + ++ + A RG GIT LA E L+ Q Sbjct: 225 LRRVRDFAQVRGEGGITLPLAVEALERLQ 253 >gi|153809776|ref|ZP_01962444.1| hypothetical protein RUMOBE_00157 [Ruminococcus obeum ATCC 29174] gi|149833954|gb|EDM89034.1| hypothetical protein RUMOBE_00157 [Ruminococcus obeum ATCC 29174] Length = 427 Score = 43.2 bits (101), Expect = 0.032, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 62/174 (35%), Gaps = 32/174 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLD--FN 122 VI GP G+GK+ LA + ++ + + T+ + + + V+ E D L Sbjct: 55 VIFYGPPGTGKTTLAKVIANTTSASFTQINATVAGKKDM-----EEVVKEAQDRLGMYGK 109 Query: 123 DTQLF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 T LF H N + + +L+ A T + V L SR + + ++ Sbjct: 110 KTILFIDEIHRFNKGQQDYLLPFVEDGTIILIGATTENPYFEVNGA-LLSR---SIIFEL 165 Query: 171 SLPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 ++ + +I++ D ID ++ A V+ Sbjct: 166 KPLSNENIRTLILRAVNDCDKGMGNYGAVIDDDALEFLADMAGGDARSALNAVE 219 >gi|326480926|gb|EGE04936.1| AAA family ATPase [Trichophyton equinum CBS 127.97] Length = 551 Score = 43.2 bits (101), Expect = 0.032, Method: Composition-based stats. Identities = 34/214 (15%), Positives = 74/214 (34%), Gaps = 37/214 (17%) Query: 49 IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN------------- 95 LI+ +IL G +G+GK+ LA + + S Sbjct: 163 NGVLRGLIERDR---VPSMILWGSAGTGKTTLARVIASMVGSRFVEINSTSSGVAECKKL 219 Query: 96 IAKSLDSILIDTRKPVLL-EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 A++ + + + RK ++ ++I + +F + L+ A T S+ V Sbjct: 220 FAEAKNELSLTGRKTIIFCDEIHRFSKSQQDVFL---GPVESGQVTLIGATTENPSFKVQ 276 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ------IFIDKKLAAYIVQRMERS 208 L SR ++ ++ + ++ + +D +L Y+ + Sbjct: 277 NA-LLSR---CRTFTLAKLTEENICAILNRALRVEGPNYSPSALVDDELIKYLAAFADGD 332 Query: 209 LVFAEKLVD-KMD---NLALSR---GMGITRSLA 235 A L++ MD +++ +TR+L Sbjct: 333 ARTALNLLELAMDLSQRENMTKDELKKSLTRTLV 366 >gi|218195010|gb|EEC77437.1| hypothetical protein OsI_16238 [Oryza sativa Indica Group] Length = 571 Score = 43.2 bits (101), Expect = 0.032, Method: Composition-based stats. Identities = 38/203 (18%), Positives = 74/203 (36%), Gaps = 36/203 (17%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110 R V+LVGP G+GK+ LA + ++ FS A + + Sbjct: 318 RGVLLVGPPGTGKTLLARAVAGEAGIPFFSVSASEFVEVFVGRGAARVRDLFKEAKEAAP 377 Query: 111 --VLLEDIDLLDF-------ND-----TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL- 155 + ++++D + ++ QL ++ ++M A P + L Sbjct: 378 SIIFIDELDAVGGSRGRSFNDERDQTLNQLLTEMDGFDSDMKVIVMAATNRPKALDPALC 437 Query: 156 -PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 P SR V + +PD + ++ D + D ++ +V + LV A Sbjct: 438 RPGRFSR-----KVLVGVPDLEGRRNILAVHLRDVPLEEDPEIICDLVASLTPGLVGA-D 491 Query: 215 LVDKMDNLALSRGMGITRSLAAE 237 L + ++ AL ++A E Sbjct: 492 LANIVNEAALLAARRGGNTVARE 514 >gi|170289821|ref|YP_001736637.1| AAA family ATPase, CDC48 subfamily protein [Candidatus Korarchaeum cryptofilum OPF8] gi|170173901|gb|ACB06954.1| AAA family ATPase, CDC48 subfamily [Candidatus Korarchaeum cryptofilum OPF8] Length = 742 Score = 43.2 bits (101), Expect = 0.032, Method: Composition-based stats. Identities = 34/223 (15%), Positives = 83/223 (37%), Gaps = 57/223 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106 P + V+L GP G+GK+ LA +++S + S + + + + Sbjct: 226 PPKGVLLYGPPGTGKTLLAKAVANESNAHFISISGPEIMSKYYGESEKRLREIFEEAEKN 285 Query: 107 TRKPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + ++++D + N QL +++ + +++ A P + Sbjct: 286 APSIIFIDELDSIAPNRNEVTGEVERRVVAQLLALMDGLKGRGEVIVIGATNRPEAID-- 343 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYI------------ 201 P L + ++I +PD + ++++ + R + + + + Sbjct: 344 -PALRRPGRFDREIEIGVPDREGRKEIL--LIHTRNMPLADDVDLDRLADITHGFVGADL 400 Query: 202 --VQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + R E ++ +++ K+D A + L EVL+E Sbjct: 401 AALVR-EAAMAALRRVLPKIDLDA------ESIPL--EVLEEL 434 Score = 37.8 bits (87), Expect = 1.4, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 20/38 (52%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P R V+L GP G GK+ +A +++S + S L Sbjct: 499 PPRGVLLYGPPGCGKTLIAKAVANESEANFISVKGPEL 536 >gi|50550265|ref|XP_502605.1| YALI0D09119p [Yarrowia lipolytica] gi|49648473|emb|CAG80793.1| YALI0D09119p [Yarrowia lipolytica] Length = 413 Score = 43.2 bits (101), Expect = 0.032, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + ++ GP G+GK+ LA + +S +T A L + I ++ + Sbjct: 193 PPKGALMYGPPGTGKTLLARACAAQSNATFLKLAAPQLVQMFIGDGAKLVRD 244 >gi|221507884|gb|EEE33471.1| calmodulin-binding protein, putative [Toxoplasma gondii VEG] Length = 746 Score = 43.2 bits (101), Expect = 0.033, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 17/25 (68%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDK 87 P + V+L GP GSGK+ LA +++ Sbjct: 43 PPKGVLLYGPPGSGKTHLARALAEE 67 >gi|221483404|gb|EEE21723.1| spermatogenesis associated factor, putative [Toxoplasma gondii GT1] Length = 746 Score = 43.2 bits (101), Expect = 0.033, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 17/25 (68%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDK 87 P + V+L GP GSGK+ LA +++ Sbjct: 43 PPKGVLLYGPPGSGKTHLARALAEE 67 >gi|330916077|ref|XP_003297285.1| hypothetical protein PTT_07630 [Pyrenophora teres f. teres 0-1] gi|311330141|gb|EFQ94627.1| hypothetical protein PTT_07630 [Pyrenophora teres f. teres 0-1] Length = 784 Score = 43.2 bits (101), Expect = 0.033, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 69/192 (35%), Gaps = 32/192 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF----- 121 V+LVGP G+GK+ LA + ++ F A + I V ++++D + Sbjct: 367 VLLVGPPGTGKTLLARACAGEAGVPFFYMSAARSKAPAI-----VFIDELDAVGGKRKSR 421 Query: 122 ----NDTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA---TVVKIS 171 + L ++N Q + + A P L L+ V++ Sbjct: 422 DANYHRQTLNQLLNDLDGFDQSTGVIFIAATNHPELLDQAL------LRPGRFDRHVQVE 475 Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231 LPD ++ ++ D L++ + R AE ++ + N A R + Sbjct: 476 LPDVTGRLAILKYHTKKIRLSPDIDLSS--IARGTPGFSGAE--LENLANSAAIRASKLQ 531 Query: 232 RSLAAEVLKETQ 243 + L + + Sbjct: 532 AKFVS--LNDME 541 >gi|291280185|ref|YP_003497020.1| Holliday junction DNA helicase RuvB [Deferribacter desulfuricans SSM1] gi|290754887|dbj|BAI81264.1| Holliday junction DNA helicase RuvB [Deferribacter desulfuricans SSM1] Length = 343 Score = 43.2 bits (101), Expect = 0.033, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 70/176 (39%), Gaps = 20/176 (11%) Query: 68 ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLF 127 ++ GP G GK+ LANI +++ + S +++ L + D+L ++ Sbjct: 55 LIYGPPGLGKTTLANIIANELGVSIKSTSGPTIEKPGDLAAILTNLSEGDVLFIDEIHRL 114 Query: 128 H------IINSIHQYDSSLLMTARTFPVSWGVCLPD------------LCS--RLKAATV 167 H + ++ + +++ + + LP L S R + + Sbjct: 115 HTSVEEILYPAMEDFKLDIIIGQGPAARTIKIDLPKFTLIGATTRAGLLTSPLRDRFGMI 174 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 ++ D D L++++++ + ID A I R + A +++ ++ + A Sbjct: 175 FRLDFYDVDELKQIVLRGAKVLGVEIDDSAAMVIASRCRGTPRIAHRILRRVRDFA 230 >gi|330503298|ref|YP_004380167.1| recombination factor protein RarA [Pseudomonas mendocina NK-01] gi|328917584|gb|AEB58415.1| recombination factor protein RarA [Pseudomonas mendocina NK-01] Length = 441 Score = 43.2 bits (101), Expect = 0.033, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 64/187 (34%), Gaps = 30/187 (16%) Query: 57 DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 ++ +I GP G GK+ LA + + + + F I+ L + + + + Sbjct: 40 EALEQGALHSMIFWGPPGVGKTTLARLLAKVTDAH-FETISAVLSGVKEIRQAVEVAQQH 98 Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162 T LF H N Q D +L+ T L SR Sbjct: 99 AAQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154 Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLV 216 A V + D+ + K++ + +D R + + ++ + +L+ Sbjct: 155 --ARVYVLKSLDEAAMRKLVNRALSDPKGLGERHLSLPDDAFQILLAAAD---GDGRRLL 209 Query: 217 DKMDNLA 223 + ++N A Sbjct: 210 NFLENAA 216 >gi|298713722|emb|CBJ48913.1| flagellar associated protein [Ectocarpus siliculosus] Length = 932 Score = 43.2 bits (101), Expect = 0.033, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 57/147 (38%), Gaps = 33/147 (22%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILIDTR 108 R V+L GP G GK+ LA ++ + +N+ K+ + ++ Sbjct: 356 RGVLLYGPPGCGKTLLARAVIAETGAHLVTVNGPDIMGKVAGESETNLRKAFEEAEENSP 415 Query: 109 KPVLLEDIDLL------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156 V ++++D + +T QL +++ I +++ A P V P Sbjct: 416 SIVFIDEVDSIAPKRDKAGGETEKRIVSQLLTLMDGIKPTSHVVVIAATNRP---NVIDP 472 Query: 157 DLCSRL-KAATVVKISLPDDDFLEKVI 182 L R + + I +PD+ +V+ Sbjct: 473 ALR-RFGRFDRELDIGIPDEQGRLEVL 498 Score = 40.1 bits (93), Expect = 0.31, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 14/74 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 PS+ V+ GP G GK+ LA +++ + S L S+ + + E Sbjct: 626 PSKGVLFYGPPGCGKTLLAKAVANQCNANFISVKGPELLSMWFGESEANIRE-------- 677 Query: 123 DTQLFHIINSIHQY 136 + N Sbjct: 678 ------LFNKARAA 685 >gi|291530499|emb|CBK96084.1| phage DNA replication protein (predicted replicative helicase loader) [Eubacterium siraeum 70/3] Length = 280 Score = 43.2 bits (101), Expect = 0.033, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 50/130 (38%), Gaps = 28/130 (21%) Query: 50 EQAVRLIDSWPS-WPSRVVIL-VGPSGSGKSCLANIWSDKSR-----------STRFSNI 96 A R ++ W + L G G+GKS LA ++ + +++ Sbjct: 111 GLARRYVEHWEDMRTDNIGCLFWGGVGTGKSYLAGCIANALMEKEIPVRMTNFALILNDL 170 Query: 97 AKSLDSI-----LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFP 148 A S + + ++L+D + + Q+F++I+S ++ L++T Sbjct: 171 AASFEGRNEYISRLCRYPLLILDDFGMERGTEYGLEQVFNVIDSRYRSGKPLIVTT---- 226 Query: 149 VSWGVCLPDL 158 + L DL Sbjct: 227 ---NLTLDDL 233 >gi|256078590|ref|XP_002575578.1| 26S protease regulatory subunit 6a [Schistosoma mansoni] gi|238660819|emb|CAZ31811.1| 26S protease regulatory subunit 6a, putative [Schistosoma mansoni] Length = 404 Score = 43.2 bits (101), Expect = 0.033, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + +++ST L + I ++ + Sbjct: 208 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRD 259 >gi|194745851|ref|XP_001955398.1| GF16259 [Drosophila ananassae] gi|190628435|gb|EDV43959.1| GF16259 [Drosophila ananassae] Length = 428 Score = 43.2 bits (101), Expect = 0.033, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + +++ST L + I ++ + Sbjct: 208 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRD 259 >gi|190574295|ref|YP_001972140.1| recombination factor protein RarA [Stenotrophomonas maltophilia K279a] gi|190012217|emb|CAQ45840.1| putative ATPase [Stenotrophomonas maltophilia K279a] Length = 453 Score = 43.2 bits (101), Expect = 0.033, Method: Composition-based stats. Identities = 42/200 (21%), Positives = 70/200 (35%), Gaps = 31/200 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD-FNDTQ 125 +IL GP G GK+ LA + ++ + + A S + + VL E T Sbjct: 62 MILWGPPGCGKTTLALLLAEYADAEF---RAISAVLSGLPEVRQVLAEAAQRFAEGRRTV 118 Query: 126 LF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKIS 171 LF H N Q ++L T L SR + V++ Sbjct: 119 LFVDEVHRFNKAQQDAFLPHIERGTILFVGATTENPSFELNSA---LLSRCR-VHVLEGV 174 Query: 172 LPDDDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 P D + + + + DR+ I + +L I + + A L++ LA Sbjct: 175 SPTD--IVEALERALGDRERGLGEEHIEVAPELLLEIATAADGDVRRALTLLEIAAELAG 232 Query: 225 SRGMGITRSLAAEVLKETQQ 244 G IT +VL + + Sbjct: 233 GEGGRITPQTLTQVLADRTR 252 >gi|116309721|emb|CAH66766.1| OSIGBa0115M15.4 [Oryza sativa Indica Group] Length = 577 Score = 43.2 bits (101), Expect = 0.033, Method: Composition-based stats. Identities = 38/203 (18%), Positives = 74/203 (36%), Gaps = 36/203 (17%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110 R V+LVGP G+GK+ LA + ++ FS A + + Sbjct: 324 RGVLLVGPPGTGKTLLARAVAGEAGIPFFSVSASEFVEVFVGRGAARVRDLFKEAQEAAP 383 Query: 111 --VLLEDIDLLDF-------ND-----TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL- 155 + ++++D + ++ QL ++ ++M A P + L Sbjct: 384 SIIFIDELDAVGGSRGRSFNDERDQTLNQLLTEMDGFDSDMKVIVMAATNRPKALDPALC 443 Query: 156 -PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 P SR V + +PD + ++ D + D ++ +V + LV A Sbjct: 444 RPGRFSR-----KVLVGVPDLEGRRNILAVHLRDVPLEEDPEIICDLVASLTPGLVGA-D 497 Query: 215 LVDKMDNLALSRGMGITRSLAAE 237 L + ++ AL ++A E Sbjct: 498 LANIVNEAALLAARRGGNTVARE 520 >gi|255636469|gb|ACU18573.1| unknown [Glycine max] Length = 486 Score = 43.2 bits (101), Expect = 0.034, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 61/150 (40%), Gaps = 26/150 (17%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P+R ++L GP G+GK+ LA + +S++T F+ A SL S + + ++ Sbjct: 247 PARGLLLFGPPGNGKTMLAKAVASESQATFFNVTAASLTSKWVGEAEKLV---------- 296 Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP---DLCSRLKAATVVKIS----LPDD 175 LF + ++ L D RLK+ +++ PDD Sbjct: 297 -RTLF----MVAISRQPSVIFIDEIDSIMSTRLANENDASRRLKSEFLIQFDGVTSNPDD 351 Query: 176 DFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 VIV ++ +D + +V+R+ Sbjct: 352 ----IVIVIGATNKPQELDDAVLRRLVKRI 377 >gi|222529053|ref|YP_002572935.1| recombination factor protein RarA [Caldicellulosiruptor bescii DSM 6725] gi|222455900|gb|ACM60162.1| AAA ATPase central domain protein [Caldicellulosiruptor bescii DSM 6725] Length = 441 Score = 43.2 bits (101), Expect = 0.034, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 59/138 (42%), Gaps = 23/138 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID---LLDFND 123 +IL GP G+GK+ +A++ ++ + T F I ++ + + ++E+ Sbjct: 55 IILYGPPGTGKTTIAHVIANATGKT-FKTINATIAGVNDIKK---IIEEAKFEFTQTGKK 110 Query: 124 TQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 T LF H N + + +L+ A T + V L SR + V ++ Sbjct: 111 TILFIDEIHRFNKLQQDALLPSVEEGVIILIGATTENPFYEVNKA-LVSR---SLVFELF 166 Query: 172 LPDDDFLEKVIVKMFADR 189 ++ + K+I + +D+ Sbjct: 167 PLKEEDILKIIERAISDK 184 >gi|161505182|ref|YP_001572294.1| hypothetical protein SARI_03320 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866529|gb|ABX23152.1| hypothetical protein SARI_03320 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 1397 Score = 43.2 bits (101), Expect = 0.034, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 39/106 (36%), Gaps = 12/106 (11%) Query: 39 SRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLAN-IWSDKSRSTRFSNIA 97 D + ++ A S ++IL G +G GKS L I + + +S + Sbjct: 313 DFSDFIKGPLLKLA----------NSPLMILSGEAGIGKSHLLADIANHRIKSRIPCLLL 362 Query: 98 KSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIIN-SIHQYDSSLLM 142 + + ++ +L +I +D + L +N LL Sbjct: 363 LGQNFVSEESPWTQILRNILRVDGKENVLLGALNARAEAQGERLLF 408 >gi|219847790|ref|YP_002462223.1| Holliday junction DNA helicase RuvB [Chloroflexus aggregans DSM 9485] gi|254767418|sp|B8G5S6|RUVB_CHLAD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|219542049|gb|ACL23787.1| Holliday junction DNA helicase RuvB [Chloroflexus aggregans DSM 9485] Length = 350 Score = 43.2 bits (101), Expect = 0.034, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 77/201 (38%), Gaps = 27/201 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 + GP G GK+ LAN+ +++ + +++ L+ D+L ++ Sbjct: 57 TLFYGPPGLGKTSLANVVANEMGAKIKITSGPAIERAGDLAAILTNLQPNDVLFIDEV-- 114 Query: 127 FHIINSIHQ-------YDSSL-LMTARTF-PVSWGVCLPD------------LCS--RLK 163 H +N + D +L L+ + S + LP L S R + Sbjct: 115 -HRLNRAVEEVLYPAMEDFALDLVVGKGPGARSLRLNLPRFTVIGATTRLALLTSPLRDR 173 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNL 222 V ++ D + +++ + + I + A I +R + A +++ ++ D Sbjct: 174 FVAVHRLVFYSDAAMTEIVSRSARILGVPISPEGAREIGRRARGTPRIANRILRRVRDYA 233 Query: 223 ALSRGMGITRSLAAEVLKETQ 243 + IT ++A E L + + Sbjct: 234 QVVANGEITLAVAREALAQLE 254 >gi|38606517|emb|CAE05991.3| OSJNBa0016O02.1 [Oryza sativa Japonica Group] Length = 584 Score = 43.2 bits (101), Expect = 0.034, Method: Composition-based stats. Identities = 38/203 (18%), Positives = 74/203 (36%), Gaps = 36/203 (17%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110 R V+LVGP G+GK+ LA + ++ FS A + + Sbjct: 331 RGVLLVGPPGTGKTLLARAVAGEAGIPFFSVSASEFVEVFVGRGAARVRDLFKEAKEAAP 390 Query: 111 --VLLEDIDLLDF-------ND-----TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL- 155 + ++++D + ++ QL ++ ++M A P + L Sbjct: 391 SIIFIDELDAVGGSRGRSFNDERDQTLNQLLTEMDGFDSDMKVIVMAATNRPKALDPALC 450 Query: 156 -PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 P SR V + +PD + ++ D + D ++ +V + LV A Sbjct: 451 RPGRFSR-----KVLVGVPDLEGRRNILAVHLRDVPLEEDPEIICDLVASLTPGLVGA-D 504 Query: 215 LVDKMDNLALSRGMGITRSLAAE 237 L + ++ AL ++A E Sbjct: 505 LANIVNEAALLAARRGGNTVARE 527 >gi|17738151|ref|NP_524464.1| Tat-binding protein-1 [Drosophila melanogaster] gi|195503003|ref|XP_002098470.1| Tbp-1 [Drosophila yakuba] gi|195573226|ref|XP_002104596.1| GD21035 [Drosophila simulans] gi|5679018|gb|AAD46823.1|AF160882_1 GH12068p [Drosophila melanogaster] gi|6434948|gb|AAF08386.1|AF145305_1 26S proteasome regulatory complex subunit p50 [Drosophila melanogaster] gi|7301041|gb|AAF56177.1| Tat-binding protein-1 [Drosophila melanogaster] gi|194184571|gb|EDW98182.1| Tbp-1 [Drosophila yakuba] gi|194200523|gb|EDX14099.1| GD21035 [Drosophila simulans] gi|220943596|gb|ACL84341.1| Tbp-1-PA [synthetic construct] gi|220953566|gb|ACL89326.1| Tbp-1-PA [synthetic construct] Length = 428 Score = 43.2 bits (101), Expect = 0.034, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + +++ST L + I ++ + Sbjct: 208 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRD 259 >gi|71650243|ref|XP_813823.1| 26S protease regulatory subunit [Trypanosoma cruzi strain CL Brener] gi|70878744|gb|EAN91972.1| 26S protease regulatory subunit, putative [Trypanosoma cruzi] gi|322821227|gb|EFZ27608.1| 26S protease regulatory subunit, putative [Trypanosoma cruzi] Length = 398 Score = 43.2 bits (101), Expect = 0.034, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + + +A S+ I V+ E Sbjct: 175 PPKGVLLYGPPGTGKTLLAKAIASNVDAAFLKVVASSIVDKYIGESARVVRE 226 >gi|71419044|ref|XP_811049.1| proteasome regulatory ATPase subunit 1 [Trypanosoma cruzi strain CL Brener] gi|71650024|ref|XP_813719.1| proteasome regulatory ATPase subunit 1 [Trypanosoma cruzi strain CL Brener] gi|70875669|gb|EAN89198.1| proteasome regulatory ATPase subunit 1, putative [Trypanosoma cruzi] gi|70878629|gb|EAN91868.1| proteasome regulatory ATPase subunit 1, putative [Trypanosoma cruzi] gi|322829818|gb|EFZ33082.1| proteasome regulatory ATPase subunit 1, putative [Trypanosoma cruzi] Length = 437 Score = 43.2 bits (101), Expect = 0.034, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA ++++ +T I L I ++ E Sbjct: 214 PPKGVLLYGPPGTGKTLLAKAVANRTDATFIRVIGSELVQRYIGEGARMIRE 265 >gi|125774761|ref|XP_001358632.1| GA10280 [Drosophila pseudoobscura pseudoobscura] gi|195145428|ref|XP_002013695.1| GL23259 [Drosophila persimilis] gi|54638371|gb|EAL27773.1| GA10280 [Drosophila pseudoobscura pseudoobscura] gi|194102638|gb|EDW24681.1| GL23259 [Drosophila persimilis] Length = 428 Score = 43.2 bits (101), Expect = 0.034, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + +++ST L + I ++ + Sbjct: 208 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRD 259 >gi|330993252|ref|ZP_08317188.1| Replication-associated recombination protein A [Gluconacetobacter sp. SXCC-1] gi|329759654|gb|EGG76162.1| Replication-associated recombination protein A [Gluconacetobacter sp. SXCC-1] Length = 463 Score = 43.2 bits (101), Expect = 0.034, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 49/144 (34%), Gaps = 26/144 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124 +IL G G GK+ +A + +D + RF ++ + R ED T Sbjct: 83 LILWGGPGVGKTTIARLLADAAG-LRFVQLSAVFSGVADLKR---AFEDARRTSAQGGGT 138 Query: 125 QLF----HIINSIHQYD-------SSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N Q ++++ T + L SR V+ + Sbjct: 139 LLFVDEIHRFNRAQQDGFLPVVEDGTVVLVGATTENPSFALNSA---LLSR---CQVLVL 192 Query: 171 SLPDDDFLEKVIVKMFADRQIFID 194 DD +EK++ + + Sbjct: 193 HRLDDAAMEKLLERAEETTGTALP 216 >gi|285018238|ref|YP_003375949.1| ATPase [Xanthomonas albilineans GPE PC73] gi|283473456|emb|CBA15961.1| putative atpase protein [Xanthomonas albilineans] Length = 457 Score = 43.2 bits (101), Expect = 0.034, Method: Composition-based stats. Identities = 42/195 (21%), Positives = 70/195 (35%), Gaps = 21/195 (10%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL-LDFNDTQ 125 +IL GP G GK+ LA + + + + F I+ L + + VL E D T Sbjct: 62 MILWGPPGCGKTTLALLLAQYADAE-FKAISAVLSG--LPDVRLVLAEAAQRFADGRRTV 118 Query: 126 LF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 LF H N + + L + A T S+ + L SR + + +S Sbjct: 119 LFVDEVHRFNKAQQDAFLPHIERGNILFVGATTENPSFELNSA-LLSRCRVHVLEAVSPQ 177 Query: 174 D--DDFLEKV--IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229 D + + + QI + I + + A L++ LA G Sbjct: 178 DIVEALQRALHDAERGLGAEQIQVSDAALLEIASAADGDVRRALTLLEIAAELAQDEGGE 237 Query: 230 ITRSLAAEVLKETQQ 244 IT +VL + + Sbjct: 238 ITAQTLQQVLADRTR 252 >gi|239606942|gb|EEQ83929.1| 26S protease regulatory subunit 6A [Ajellomyces dermatitidis ER-3] Length = 465 Score = 43.2 bits (101), Expect = 0.034, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 54/160 (33%), Gaps = 38/160 (23%) Query: 70 VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113 GP G+GK+ LA + ++ +T L + I ++ + Sbjct: 251 YGPPGTGKTLLARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPSIIFI 310 Query: 114 EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158 +++D + + ++N D ++ A L L Sbjct: 311 DELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRVKVLAATNRVDVLDPAL--L 368 Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 S RL ++ LP+++ +++ R++ +D + Sbjct: 369 RSGRLD--RKIEFPLPNEEARAQIL--RIHSRKMAVDDGV 404 >gi|197334410|ref|YP_002155669.1| ATPase, AAA family [Vibrio fischeri MJ11] gi|197315900|gb|ACH65347.1| ATPase, AAA family [Vibrio fischeri MJ11] Length = 448 Score = 43.2 bits (101), Expect = 0.034, Method: Composition-based stats. Identities = 40/200 (20%), Positives = 78/200 (39%), Gaps = 40/200 (20%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST-------------RFSNIAKSLDSILIDTRKPVLL 113 +IL GP G+GK+ LA + ++ + + + I K+ ++ + R + + Sbjct: 54 MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKDIRAAIEKAKENQITGRRTIMFV 113 Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++ + + F HI + + + A T S+ + L SR A V K+ Sbjct: 114 DEVHRFNKSQQDAFLPHI-----EDGTITFIGATTENPSFELNNA-LLSR---ARVYKLK 164 Query: 172 LPDDDFLEKVIVKMF--ADRQI-----FIDKKLAAYIV------QRMERSLVFAEKLVDK 218 + + + +VI + DR + + + + RM SL + E L D Sbjct: 165 SLEKEDIVQVIDQALLDKDRGLNDENFVLPDDVKLQLADLVSGDARM--SLNYLELLHDM 222 Query: 219 MDNLALSRGMGITRSLAAEV 238 + A + L AEV Sbjct: 223 AEENA-QGKKVVDLPLLAEV 241 >gi|195054667|ref|XP_001994246.1| GH23603 [Drosophila grimshawi] gi|195112222|ref|XP_002000673.1| GI10364 [Drosophila mojavensis] gi|195392345|ref|XP_002054818.1| GJ22583 [Drosophila virilis] gi|193896116|gb|EDV94982.1| GH23603 [Drosophila grimshawi] gi|193917267|gb|EDW16134.1| GI10364 [Drosophila mojavensis] gi|194152904|gb|EDW68338.1| GJ22583 [Drosophila virilis] Length = 428 Score = 43.2 bits (101), Expect = 0.034, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + +++ST L + I ++ + Sbjct: 208 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRD 259 >gi|121602885|ref|YP_989024.1| recombination factor protein RarA [Bartonella bacilliformis KC583] gi|120615062|gb|ABM45663.1| ATPase, AAA family protein [Bartonella bacilliformis KC583] Length = 439 Score = 43.2 bits (101), Expect = 0.034, Method: Composition-based stats. Identities = 29/195 (14%), Positives = 66/195 (33%), Gaps = 38/195 (19%) Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDID 117 + +I G G+GK+ +A + + ++ + S I + + +K + Sbjct: 50 AAGSLGSMIFWGAPGTGKTTVARLLALETNFAFEQVSAIFTGITEL----KKVFEVARAR 105 Query: 118 LLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLK 163 + T LF H N + + +L+ T + L SR Sbjct: 106 FMSGAKTLLFVDEIHRFNRAQQDIFLPFMEDGTVVLVGATTENPSFALNAA---LLSR-- 160 Query: 164 AATVVKISLPDDDFLEKVIVKM--FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK--- 218 A V+ DD+ L +++ + + + +D +++ + LV++ Sbjct: 161 -ARVLTFHTHDDESLRRLLKRAEELERKTLPLDDHAKDVLIRISDGDARAMLTLVEEIWC 219 Query: 219 -------MDNLALSR 226 ++ AL Sbjct: 220 ITRSGEILNAEALQE 234 >gi|71661257|ref|XP_817652.1| 26S protease regulatory subunit [Trypanosoma cruzi strain CL Brener] gi|70882857|gb|EAN95801.1| 26S protease regulatory subunit, putative [Trypanosoma cruzi] Length = 398 Score = 43.2 bits (101), Expect = 0.034, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + + +A S+ I V+ E Sbjct: 175 PPKGVLLYGPPGTGKTLLAKAIASNVDAAFLKVVASSIVDKYIGESARVVRE 226 >gi|326403764|ref|YP_004283846.1| putative transposase-associated ATP-binding protein [Acidiphilium multivorum AIU301] gi|326404123|ref|YP_004284205.1| putative transposase-associated ATP-binding protein [Acidiphilium multivorum AIU301] gi|325050626|dbj|BAJ80964.1| putative transposase-associated ATP-binding protein [Acidiphilium multivorum AIU301] gi|325050985|dbj|BAJ81323.1| putative transposase-associated ATP-binding protein [Acidiphilium multivorum AIU301] Length = 291 Score = 43.2 bits (101), Expect = 0.034, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 22/109 (20%) Query: 70 VGPSGSGKSCLANI---------WS-------DKSRSTRFSNIAKSLDSIL--IDTRKPV 111 GP G GKS LA W D + + + +L++ + +D + Sbjct: 113 FGPPGGGKSHLAAAIGLALVENGWRVLFTRTSDLVQKLQIARRELALEATIAKLDKFHLL 172 Query: 112 LLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 +L+D+ + + + LF +I S SL++TA WG PD Sbjct: 173 ILDDLAYVTKDQAETSVLFELI-SARYERRSLMITANQPFGEWGKVFPD 220 >gi|317180683|dbj|BAJ58469.1| recombination factor protein RarA [Helicobacter pylori F32] Length = 391 Score = 43.2 bits (101), Expect = 0.034, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 71/196 (36%), Gaps = 25/196 (12%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILI--------DTRKPVLLE 114 GP G GK+ LA I + F+ L+ + + + V ++ Sbjct: 38 PHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRLKLKNYQHTLLKPVVFID 97 Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 + L+ + I + D +L++ A T ++ + + SR + + +++ + Sbjct: 98 ETHRLNKTQQEFLLPI---MEKDHALILGASTQDPNYSLSHA-IRSR---SFIFELTPLN 150 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234 L+K+ K + I+ Y++ S A L++ +D L+ IT Sbjct: 151 KSDLDKLCAKALTLLKKQIEPSAKTYLLNN---SAGDARALLNLLD-LSAKIENPITLKT 206 Query: 235 AAEV----LKETQQCD 246 + L + D Sbjct: 207 LQSLRPHSLNDGSHSD 222 >gi|307178105|gb|EFN66932.1| Spastin [Camponotus floridanus] Length = 711 Score = 43.2 bits (101), Expect = 0.034, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 58/165 (35%), Gaps = 55/165 (33%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P+R ++L GP G+GK+ LA + + +T FS A SL S + + ++ Sbjct: 469 PARGLLLFGPPGNGKTLLARAVATQCHATFFSISAASLTSKYVGEGEKLVRALFAIAREL 528 Query: 113 ------LEDIDLLDFNDTQLFHIINS--------------IHQYDSSLLMTARTFPVSWG 152 ++++D L H + + + L+M A P Sbjct: 529 QPSVIFIDEVDSLLSERKDNEHEASRRLKTEFLVEFDGLPCNPEERVLVMAATNRPQELD 588 Query: 153 ------------VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 V LPDL +R+ L++++ K Sbjct: 589 EAALRRFTKRVYVTLPDLQTRI-------------VLLQRLLAKH 620 >gi|301774052|ref|XP_002922441.1| PREDICTED: nuclear valosin-containing protein-like [Ailuropoda melanoleuca] Length = 849 Score = 43.2 bits (101), Expect = 0.034, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 60/168 (35%), Gaps = 42/168 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P R V+L GP G GK+ LAN + + A + + + + Sbjct: 290 PPRGVLLHGPPGCGKTLLANAIAGELDLPILKVAATEIVSGVSGESEQKLRELFEQAVSN 349 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151 + +++ID + QL + N++ + L++ A P + Sbjct: 350 APCVLFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNTMAETAQVLVIGATNRPDAL 409 Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKK 196 L +A + + +PD+ E+++ + R++ + + Sbjct: 410 DPALR------RAGRFDREICLGIPDEASRERILRTLC--RKLRLPES 449 >gi|227509636|ref|ZP_03939685.1| recombination ATPase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190998|gb|EEI71065.1| recombination ATPase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 441 Score = 43.2 bits (101), Expect = 0.034, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 8/77 (10%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDF- 121 +I GP GSGK+ LA I + K+++ FS + + I + D+ Sbjct: 52 PSMIFWGPPGSGKTTLAEIIAKKTKAKFVTFSAVTSGIRDIRKLMKDAEANRDMGGKTIV 111 Query: 122 --NDTQLFHIINSIHQY 136 ++ H N Q Sbjct: 112 FVDEI---HRFNKAQQD 125 >gi|237839317|ref|XP_002368956.1| ATPase, AAA family domain-containing protein [Toxoplasma gondii ME49] gi|211966620|gb|EEB01816.1| ATPase, AAA family domain-containing protein [Toxoplasma gondii ME49] Length = 746 Score = 43.2 bits (101), Expect = 0.034, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 17/25 (68%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDK 87 P + V+L GP GSGK+ LA +++ Sbjct: 43 PPKGVLLYGPPGSGKTHLARALAEE 67 >gi|195331393|ref|XP_002032387.1| GM26527 [Drosophila sechellia] gi|194121330|gb|EDW43373.1| GM26527 [Drosophila sechellia] Length = 428 Score = 43.2 bits (101), Expect = 0.034, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + +++ST L + I ++ + Sbjct: 208 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRD 259 >gi|194910264|ref|XP_001982101.1| GG11226 [Drosophila erecta] gi|190656739|gb|EDV53971.1| GG11226 [Drosophila erecta] Length = 428 Score = 43.2 bits (101), Expect = 0.034, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + +++ST L + I ++ + Sbjct: 208 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRD 259 >gi|116328835|ref|YP_798555.1| recombination factor protein RarA [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331744|ref|YP_801462.1| recombination factor protein RarA [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121579|gb|ABJ79622.1| Holliday junction resolvase helicase subunit-like ATPase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116125433|gb|ABJ76704.1| Holliday junction resolvase helicase subunit-like ATPase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 423 Score = 43.2 bits (101), Expect = 0.034, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 50/128 (39%), Gaps = 18/128 (14%) Query: 67 VILVGPSGSGKSCLANIWSDK---------SRSTRFSNIAKSLDSILIDTRKPVLLEDID 117 +IL GP G+GKS LA I K + ST S I K L+ + + L++I Sbjct: 44 IILYGPPGTGKSTLAGILCRKWNLPFVEYNAVSTGVSEIKKLLERAEREGTILLFLDEIH 103 Query: 118 LL-DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 L + +L+ A T ++ + P L SR ++KI + Sbjct: 104 RFSASQQDSLL----KGVETGHLVLIGATTENPAFRITRP-LLSR---CQILKIEPLSWE 155 Query: 177 FLEKVIVK 184 ++ + Sbjct: 156 EQSLLLER 163 >gi|37589162|gb|AAH58744.1| Wrnip1 protein [Mus musculus] Length = 526 Score = 43.2 bits (101), Expect = 0.034, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 16/83 (19%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA+I ++ S+ + S + + + D+ N+ Sbjct: 123 PSLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 177 Query: 125 QLF-----------HIINSIHQY 136 F H N Q Sbjct: 178 SFFKRKTILFIDEIHRFNKSQQD 200 >gi|268530368|ref|XP_002630310.1| Hypothetical protein CBG00746 [Caenorhabditis briggsae] gi|187038824|emb|CAP21912.1| hypothetical protein CBG_00746 [Caenorhabditis briggsae AF16] Length = 811 Score = 43.2 bits (101), Expect = 0.034, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 47/121 (38%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + Sbjct: 242 PPRGILLFGPPGTGKTLIARAVANETGAFFFLINGPEIMSKMSGESESNLRKAFAECEKN 301 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + +++ A P S Sbjct: 302 SPAILFIDEIDAIAPKREKAHGEVEKRIVSQLLTLMDGLKTRAHVVVIAATNRPNSIDGA 361 Query: 155 L 155 L Sbjct: 362 L 362 Score = 40.1 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 515 PSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKA 571 >gi|327284728|ref|XP_003227088.1| PREDICTED: ATPase family AAA domain-containing protein 1-A-like [Anolis carolinensis] Length = 362 Score = 43.2 bits (101), Expect = 0.034, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 19/40 (47%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P R V+L GP G GK+ LA + S + A +L Sbjct: 129 PPRGVLLYGPPGCGKTLLAKAIAQASGCRFINLQASTLTD 168 >gi|326336426|ref|ZP_08202596.1| AAA family ATPase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691299|gb|EGD33268.1| AAA family ATPase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 428 Score = 43.2 bits (101), Expect = 0.034, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 48/140 (34%), Gaps = 32/140 (22%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I GP G+GK+ LA I + + + T FS A S + DI + Sbjct: 42 PSLIFWGPPGTGKTTLAYIIAKEGQRTFFSLSAISSGIKEVR--------DIIEKSKREQ 93 Query: 125 QLF------------HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164 LF H N + L+ A T S+ V +P L SR Sbjct: 94 GLFTPKNPIIFIDEIHRFNKTQQDSLLEAVERGWVTLIGATTENPSFEV-IPALLSR--- 149 Query: 165 ATVVKISLPDDDFLEKVIVK 184 V + + L ++ + Sbjct: 150 CQVYTLHPFTKEDLLALLHR 169 >gi|259046674|ref|ZP_05737075.1| ATPase, AAA family domain protein [Granulicatella adiacens ATCC 49175] gi|259036839|gb|EEW38094.1| ATPase, AAA family domain protein [Granulicatella adiacens ATCC 49175] Length = 423 Score = 43.2 bits (101), Expect = 0.034, Method: Composition-based stats. Identities = 33/172 (19%), Positives = 67/172 (38%), Gaps = 24/172 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKP-------VLLEDID 117 +IL GP G+GK+ +A+ S ++ + + + + I + +LL++I Sbjct: 43 MILYGPPGTGKTSIASAISGSTKVSFRQLNAATDTKKDLQIVAEEAKMSGSVILLLDEIH 102 Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 LD D L HI N +L+ A T + P + SR + ++ Sbjct: 103 RLDKTKQDFLLPHIEN-----GRIILVGATTENPYISIN-PAIRSR---TQIFELKPLSP 153 Query: 176 DFLEKVIVKMFAD--RQI-FIDKKLAAYIVQRMERSLV-FAEKLVDKMDNLA 223 + + K +V D R + +D ++ + S ++ ++ A Sbjct: 154 EDIIKALVNAIEDEERGLGKLDLDVSEEALNHFASSTNGDVRSALNALELAA 205 >gi|225620542|ref|YP_002721799.1| Holliday junction resolvase helicase subunit-like ATPase [Brachyspira hyodysenteriae WA1] gi|225215361|gb|ACN84095.1| Holliday junction resolvase helicase subunit-like ATPase [Brachyspira hyodysenteriae WA1] Length = 431 Score = 43.2 bits (101), Expect = 0.034, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 78/201 (38%), Gaps = 32/201 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++ GP G GKS +A+I + K++S A + + + R+ + + +L + T L Sbjct: 51 MVFFGPPGVGKSTVASIIAKKTKSEYIKLNAVLSN--VSEIREAIKKAEKNLENRKKTIL 108 Query: 127 F----HIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 F H N Q + S+++ T + L SR+ + + DD Sbjct: 109 FIDEIHRFNKSQQDALLPAVENGSIILIGSTTLNPYFYLNNALLSRI---MLFEFRNLDD 165 Query: 176 DFLEKVIVKMFAD-RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS---- 225 + +++ ++K D R + ++ + IV+ S K ++ L+ Sbjct: 166 NDIKEAVLKAIEDKRGLGEYDVDVEDEAVNLIVRY---SHGDVRKAFTYLEASYLATQID 222 Query: 226 ---RGMGITRSLAAEVLKETQ 243 + IT + +V + Sbjct: 223 ESKEKLTITEEIVRDVTSKQS 243 >gi|186478078|ref|NP_001117220.1| AAA-type ATPase family protein [Arabidopsis thaliana] Length = 1224 Score = 43.2 bits (101), Expect = 0.034, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 59/141 (41%), Gaps = 27/141 (19%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----SNIAKSLDSILIDTRKPVLLEDIDL 118 P++ ++L GP G+GK+ LA + ++ + S+I +DS+L P E + Sbjct: 984 PTKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKVDSMLGRRENPGEHEAM-R 1042 Query: 119 LDFNDTQLFHIIN----SIHQYDSSLLMTA------------RTFPVSWGVCLPDL--CS 160 N+ F +IN + L++ A R P V LPD S Sbjct: 1043 KMKNE---F-MINWDGLRTKDKERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDSANRS 1098 Query: 161 RLKAATVVKISLPDDDFLEKV 181 ++ + + K + +D LE + Sbjct: 1099 KILSVILAKEEMAEDVDLEAI 1119 >gi|70606665|ref|YP_255535.1| hypothetical protein Saci_0877 [Sulfolobus acidocaldarius DSM 639] gi|30088860|gb|AAP13476.1| AAA family ATPase [Sulfolobus acidocaldarius] gi|68567313|gb|AAY80242.1| hypothetical protein Saci_0877 [Sulfolobus acidocaldarius DSM 639] Length = 591 Score = 43.2 bits (101), Expect = 0.034, Method: Composition-based stats. Identities = 30/194 (15%), Positives = 77/194 (39%), Gaps = 39/194 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + ++L GP G+GK+ +A +++ +++ + S+ ++ Sbjct: 365 PVKGILLYGPPGTGKTSIAKALANELQASFIVVSGDEISSVGPFKAGELIAEKFHIAKDN 424 Query: 113 ------LEDIDLLD---------FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 +++ID++ T+L ++ I + + +++ A P L Sbjct: 425 SPSIIFIDEIDMIARTRGENEWRGALTELLSEMDGIRENEDVIIIGATNRPWDLDPAL-- 482 Query: 158 LCSRLKAA---TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL--VFA 212 L+A ++ + PD + KV+ + + + +D+++ V RM + Sbjct: 483 ----LRAGRFDRIIYVPPPDYEGRVKVLKVLT--KGLSVDEEILN-KVSRMTNNYTPADL 535 Query: 213 EKLVDKMDNLALSR 226 + +VD++ L Sbjct: 536 KLVVDEIRRNLLKE 549 >gi|332189372|gb|AEE27493.1| AAA-type ATPase-like protein [Arabidopsis thaliana] Length = 1218 Score = 43.2 bits (101), Expect = 0.035, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 59/141 (41%), Gaps = 27/141 (19%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----SNIAKSLDSILIDTRKPVLLEDIDL 118 P++ ++L GP G+GK+ LA + ++ + S+I +DS+L P E + Sbjct: 978 PTKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKVDSMLGRRENPGEHEAM-R 1036 Query: 119 LDFNDTQLFHIIN----SIHQYDSSLLMTA------------RTFPVSWGVCLPDL--CS 160 N+ F +IN + L++ A R P V LPD S Sbjct: 1037 KMKNE---F-MINWDGLRTKDKERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDSANRS 1092 Query: 161 RLKAATVVKISLPDDDFLEKV 181 ++ + + K + +D LE + Sbjct: 1093 KILSVILAKEEMAEDVDLEAI 1113 >gi|329939451|ref|ZP_08288787.1| cell division protein ftsH-like protein [Streptomyces griseoaurantiacus M045] gi|329301680|gb|EGG45574.1| cell division protein ftsH-like protein [Streptomyces griseoaurantiacus M045] Length = 676 Score = 43.2 bits (101), Expect = 0.035, Method: Composition-based stats. Identities = 36/204 (17%), Positives = 66/204 (32%), Gaps = 49/204 (24%) Query: 67 VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110 V+L GP G+GK+ LA + ++ S + + + Sbjct: 205 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKANAPAI 264 Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 V +++ID + D + L + ++ +L+ A P L Sbjct: 265 VFVDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDVKGGVILIAATNRPDILDPAL 324 Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVKMFADRQIFIDKKL-- 197 PD+ RL+ V + P D L V + + L Sbjct: 325 LRPGRFDRQIAVDRPDMQGRLEILKVHQKGKPVAPDVDLSAVARRTPGFTGADLSNVLNE 384 Query: 198 AAYIVQRMERSLVFAEKLVDKMDN 221 AA + R +R L+ + L + +D Sbjct: 385 AALLTARSDRKLIDNQMLDEAIDR 408 >gi|229550919|ref|ZP_04439644.1| recombination ATPase [Lactobacillus rhamnosus LMS2-1] gi|258538369|ref|YP_003172868.1| recombination factor protein RarA [Lactobacillus rhamnosus Lc 705] gi|229315744|gb|EEN81717.1| recombination ATPase [Lactobacillus rhamnosus LMS2-1] gi|257150045|emb|CAR89017.1| AAA ATPase [Lactobacillus rhamnosus Lc 705] Length = 448 Score = 43.2 bits (101), Expect = 0.035, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 21/138 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI-----------LIDTRKPVLL 113 +I GP G GK+ LA I + ++++ FS + + I + + V + Sbjct: 51 MIFWGPPGVGKTTLARIIARRTQAQFVTFSAVTSGIKEIKQVMKEAEQNRELGQKTIVFV 110 Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 ++I + F + S +L+ A T S+ V L SR + V + Sbjct: 111 DEIHRFNKAQQDAFLPY---VERGSIILIGATTENPSFEVNAA-LLSRTR---VFVLHGL 163 Query: 174 DDDFLEKVIVKMFAD-RQ 190 L ++ + D R Sbjct: 164 TSAELVDLLQRALKDPRG 181 >gi|255284508|ref|ZP_05349063.1| replication-associated recombination protein A [Bryantella formatexigens DSM 14469] gi|255264944|gb|EET58149.1| replication-associated recombination protein A [Bryantella formatexigens DSM 14469] Length = 438 Score = 43.2 bits (101), Expect = 0.035, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 61/177 (34%), Gaps = 34/177 (19%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 +I GP G+GK+ LA + ++ + + K ++ ++ + + + Sbjct: 53 GSLIFYGPPGTGKTTLAKVIANTTSADFKQINATVAGKKDMEDVVKAAKDSL------GM 106 Query: 120 DFNDTQLF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 T LF H N + + +L+ A T + V L SR + V Sbjct: 107 YGKKTILFVDEIHRFNKGQQDYLLPFVEDGTLILIGATTENPYFEVNSA-LISR---SVV 162 Query: 168 VKISLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVD 217 ++ + + +I + D R + ID ++ + A V+ Sbjct: 163 FELKPLSKEDICTLIDRAINDKERGMGNYNAVIDGDAKDFLADVADGDARAALNAVE 219 >gi|152987484|ref|YP_001347959.1| recombination factor protein RarA [Pseudomonas aeruginosa PA7] gi|150962642|gb|ABR84667.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7] Length = 441 Score = 43.2 bits (101), Expect = 0.035, Method: Composition-based stats. Identities = 40/210 (19%), Positives = 76/210 (36%), Gaps = 32/210 (15%) Query: 57 DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 ++ +I GP G GK+ LA + + S + F I+ L + + + + Sbjct: 40 EALEQGALHSMIFWGPPGVGKTTLARLLAQVSDAH-FETISAVLSGVKEIRQAVEVAKQH 98 Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162 T LF H N Q D +L+ T L SR Sbjct: 99 AAQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154 Query: 163 KAATVVKISLPDDDFLEKVI------VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216 A V + D+ L K++ K R + + ++ ++ + +L+ Sbjct: 155 --ARVYVLKSLDETALRKLVGRALNEEKGLGKRNLSLPEESFQVLLAAAD---GDGRRLL 209 Query: 217 DKMDNLA-LSR-GMGITRSLAAEVLKETQQ 244 + ++N A L+ G I+ L +L +T++ Sbjct: 210 NLLENAADLAEDGSEISPELLQNLLGDTRR 239 >gi|66509032|ref|XP_623527.1| PREDICTED: 26S protease regulatory subunit 4 isoform 1 [Apis mellifera] Length = 440 Score = 43.2 bits (101), Expect = 0.035, Method: Composition-based stats. Identities = 31/206 (15%), Positives = 69/206 (33%), Gaps = 45/206 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + VIL GP G+GK+ LA ++++ +T + L + ++ Sbjct: 218 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEH 277 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTART---- 146 +++ID + + ++N + + D ++M Sbjct: 278 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVVMATNRIETL 337 Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206 P D ++ LPD+ ++ + + D LA I+ + + Sbjct: 338 DPALIRPGRIDRK--------IEFPLPDEKTKRRIFSIHTSRMTLAPDVNLAELIMAKDD 389 Query: 207 RSLVFAEKLVDKMDNLALSRGM-GIT 231 S + + + +AL +T Sbjct: 390 LSGADIKAICTEAGLMALRERRMKVT 415 >gi|269114959|ref|YP_003302722.1| holliday junction DNA helicase ruvB [Mycoplasma hominis] gi|268322584|emb|CAX37319.1| Holliday junction DNA helicase ruvB [Mycoplasma hominis ATCC 23114] Length = 317 Score = 43.2 bits (101), Expect = 0.035, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 68/189 (35%), Gaps = 36/189 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRF---SNIAKSLDSIL-----IDTRKPVLLEDIDL 118 ++ GP G GK+ LA I S +++S + + +L I+ + +++I Sbjct: 40 LLFYGPPGLGKTTLAKIISKETKSNIVYVQGPLIEKKSDVLTIFSSINDNDIIFIDEIHG 99 Query: 119 LDFNDTQLFHIINSIHQYD--------------------SSLLMTARTFPVSWGVCLPDL 158 ++ N +LF+ S + L+ A T L D Sbjct: 100 INKNIEELFY---SALEEGTIDVALGVDGDKKIMRMKLKKFCLIAATTKINLLSKPLKD- 155 Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218 + + K+S D + K+I +I I +I ++ A L+ + Sbjct: 156 ----RFGYIGKLSDYSDLEIAKIIFNSATKNKIKIKNDAINFIAIHSRQTPRVANTLLKR 211 Query: 219 MDNLALSRG 227 +++ A+ Sbjct: 212 VNDFAIYYK 220 >gi|157129681|ref|XP_001655453.1| 26S protease regulatory subunit 6a [Aedes aegypti] gi|108882054|gb|EAT46279.1| 26S protease regulatory subunit 6a [Aedes aegypti] Length = 428 Score = 43.2 bits (101), Expect = 0.035, Method: Composition-based stats. Identities = 24/167 (14%), Positives = 59/167 (35%), Gaps = 38/167 (22%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V+L GP G+GK+ LA + +++ST L + I ++ Sbjct: 208 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 267 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151 ++++D + + + ++N + ++ A Sbjct: 268 SPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDIL 327 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L L S RL ++ P+++ +++ R++ + + Sbjct: 328 DPAL--LRSGRLD--RKIEFPHPNEEARARIMQ--IHSRKMNVSPDV 368 >gi|332246191|ref|XP_003272236.1| PREDICTED: ATPase WRNIP1 isoform 1 [Nomascus leucogenys] Length = 638 Score = 43.2 bits (101), Expect = 0.035, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 16/83 (19%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA+I ++ S+ + S + + + D+ N+ Sbjct: 235 PSLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 289 Query: 125 QLF-----------HIINSIHQY 136 F H N Q Sbjct: 290 SFFKRKTILFIDEIHRFNKSQQD 312 >gi|325959942|ref|YP_004291408.1| proteasome-activating nucleotidase [Methanobacterium sp. AL-21] gi|325331374|gb|ADZ10436.1| Proteasome-activating nucleotidase [Methanobacterium sp. AL-21] Length = 410 Score = 43.2 bits (101), Expect = 0.035, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P + V+L GP G+GK+ LA + ++ +T +A I ++ Sbjct: 184 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIKIVASEFVKKYIGEGARLV 233 >gi|296197529|ref|XP_002746322.1| PREDICTED: ATPase WRNIP1-like isoform 1 [Callithrix jacchus] Length = 666 Score = 43.2 bits (101), Expect = 0.035, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 16/83 (19%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA+I ++ S+ + S + + + D+ N+ Sbjct: 263 PSLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 317 Query: 125 QLF-----------HIINSIHQY 136 F H N Q Sbjct: 318 SFFKRKTILFIDEIHRFNKSQQD 340 >gi|289192286|ref|YP_003458227.1| 26S proteasome subunit P45 family [Methanocaldococcus sp. FS406-22] gi|288938736|gb|ADC69491.1| 26S proteasome subunit P45 family [Methanocaldococcus sp. FS406-22] Length = 430 Score = 43.2 bits (101), Expect = 0.035, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + ++L GP G+GK+ LA + ++ +T + L I ++ + Sbjct: 203 PPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKD 254 >gi|256810123|ref|YP_003127492.1| 26S proteasome subunit P45 family [Methanocaldococcus fervens AG86] gi|256793323|gb|ACV23992.1| 26S proteasome subunit P45 family [Methanocaldococcus fervens AG86] Length = 430 Score = 43.2 bits (101), Expect = 0.035, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + ++L GP G+GK+ LA + ++ +T + L I ++ + Sbjct: 203 PPKGILLYGPPGTGKTLLAKAVARETNATFIRVVGSELVKKFIGEGATLVKD 254 >gi|254573216|ref|XP_002493717.1| One of six ATPases of the 19S regulatory particle of the 26S proteasome [Pichia pastoris GS115] gi|238033516|emb|CAY71538.1| One of six ATPases of the 19S regulatory particle of the 26S proteasome [Pichia pastoris GS115] gi|328354458|emb|CCA40855.1| 26S protease regulatory subunit 6A [Pichia pastoris CBS 7435] Length = 423 Score = 43.2 bits (101), Expect = 0.035, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + ++ GP G+GK+ LA + +S +T A L + I ++ + Sbjct: 203 PPKGALMYGPPGTGKTLLARACAAQSNATFLKLAAPQLVQMFIGDGAKLVRD 254 >gi|195449908|ref|XP_002072279.1| GK22416 [Drosophila willistoni] gi|194168364|gb|EDW83265.1| GK22416 [Drosophila willistoni] Length = 428 Score = 43.2 bits (101), Expect = 0.035, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + +++ST L + I ++ + Sbjct: 208 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRD 259 >gi|160878660|ref|YP_001557628.1| recombination factor protein RarA [Clostridium phytofermentans ISDg] gi|160427326|gb|ABX40889.1| AAA ATPase central domain protein [Clostridium phytofermentans ISDg] Length = 444 Score = 43.2 bits (101), Expect = 0.035, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 75/205 (36%), Gaps = 39/205 (19%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD---F 121 VI GP G+GK+ LA + ++ + SN + + ++E Sbjct: 53 GSVIFYGPPGTGKTTLAKVIANTTS----SNFQQINATSAGKKDMEAVIEQAKQTLGMYG 108 Query: 122 NDTQLF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 T LF H N + + +L+ A T + V L SR + V + Sbjct: 109 KKTILFVDEIHRFNKGQQDYLLPFVEDGTIVLVGATTENPYFEVNSA-LISR---SIVFE 164 Query: 170 ISLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 + + + +++++++ D + + ++ ++ A ++ ++ Sbjct: 165 LKPLEQNDIKELLIRAITDKEKGLGAYHAVMEDDALDFLANAAN---GDARSALNAIELG 221 Query: 223 ALSRGMG------ITRSLAAEVLKE 241 L+ IT +A+E +++ Sbjct: 222 VLTTKRSEDGFIHITLEVASECIQK 246 >gi|325954336|ref|YP_004237996.1| ATPase AAA [Weeksella virosa DSM 16922] gi|323436954|gb|ADX67418.1| AAA ATPase central domain protein [Weeksella virosa DSM 16922] Length = 424 Score = 43.2 bits (101), Expect = 0.036, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 53/140 (37%), Gaps = 22/140 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDT--RKPVLLEDIDLL 119 +I GP G+GK+ LA + ++ S + + K + ++ + E +L Sbjct: 42 MIFWGPPGTGKTTLAQLIAELSNRPFYTLSAINAGVKDVREVIDKAKSQNLFTTEKNPIL 101 Query: 120 DFNDTQLFHIIN--------SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 ++ H N S + L+ A T S+ V P L SR A V + Sbjct: 102 FIDEI---HRFNKSQQDSLLSAVEKGYITLIGATTENPSFEVV-PALLSR---AQVYTLH 154 Query: 172 LPDDDFLEKVIVKMFADRQI 191 + LE ++ + + + Sbjct: 155 ALVKEDLEDLLFRAIQEDNL 174 >gi|315645809|ref|ZP_07898930.1| AAA ATPase central domain protein [Paenibacillus vortex V453] gi|315278570|gb|EFU41884.1| AAA ATPase central domain protein [Paenibacillus vortex V453] Length = 435 Score = 43.2 bits (101), Expect = 0.036, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 68/182 (37%), Gaps = 35/182 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDID---LLDF 121 ++L GP G GK+ LA+I S +++ R + + S+ + ++E L Sbjct: 54 ILLYGPPGCGKTTLAHIISQQTKGHFVRLNAVEASVKDVRE------VIEQAQSNRSLYG 107 Query: 122 NDTQLF----HIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 T LF H NS Q + +++ T + L SR +T+ ++ Sbjct: 108 TKTILFLDEVHRFNSSRQDALLPAVENGTIIFIGATTENPFHYVNGALMSR---STLFQL 164 Query: 171 SLPDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + + + AD+ + +++ +I + ++ ++ A Sbjct: 165 QPLTKEHSMIAMQRALADQDKGLGFMDLRAEEEALDHIATMAN---GDIRRALNALELAA 221 Query: 224 LS 225 ++ Sbjct: 222 MT 223 >gi|300023015|ref|YP_003755626.1| ATPase AAA [Hyphomicrobium denitrificans ATCC 51888] gi|299524836|gb|ADJ23305.1| AAA ATPase central domain protein [Hyphomicrobium denitrificans ATCC 51888] Length = 439 Score = 43.2 bits (101), Expect = 0.036, Method: Composition-based stats. Identities = 37/189 (19%), Positives = 71/189 (37%), Gaps = 25/189 (13%) Query: 65 RVVILVGPSGSGKSCLANIWSDKS--RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 +I GP GSGK+ +A + ++++ + S I + + + ++ Sbjct: 53 PSLIFWGPPGSGKTTIARLLANETNLNFEQLSAIFSGVADLRKAFERAKIM----REQGK 108 Query: 123 DTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 T LF H N + + L+ A T S+ + L SR A+V+ + Sbjct: 109 GTLLFIDEIHRFNRSQQDSFLPYMEDGTITLVGATTENPSFELNAAVL-SR---ASVLVL 164 Query: 171 SLPDDDFLEKVIVKMFAD--RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228 + DD LE ++ + AD R + +D + + L + + G Sbjct: 165 NRLDDATLETLLQRAEADVGRPLPLDADAREALKGMADGDGRAILNLAEDVFAAVAPSGK 224 Query: 229 GITR-SLAA 236 +TR +L Sbjct: 225 ALTRDALVK 233 >gi|157964609|ref|YP_001499433.1| transposase [Rickettsia massiliae MTU5] gi|157844385|gb|ABV84886.1| Transposase and inactivated derivative [Rickettsia massiliae MTU5] Length = 253 Score = 43.2 bits (101), Expect = 0.036, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 44/114 (38%), Gaps = 24/114 (21%) Query: 61 SWPSRV--VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL-------------- 104 +W R +++ GPSG GKS LA + S ++ Sbjct: 96 AWIKRSENLLIFGPSGVGKSHLAAAIGYALVEKHVKVLFISTTKLVQLLQAARKEYRLPN 155 Query: 105 ----IDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSW 151 +D ++L+DI + ++ + LF +I ++ S+++TA W Sbjct: 156 ELTKLDKYDVIILDDIGYVRKDEGETHVLFELIAQRYESG-SMIVTANQPFSEW 208 >gi|145500528|ref|XP_001436247.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124403386|emb|CAK68850.1| unnamed protein product [Paramecium tetraurelia] Length = 652 Score = 43.2 bits (101), Expect = 0.036, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 21/43 (48%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109 ++LVGP GSGK+ LA + ++ + F D + + Sbjct: 257 ILLVGPPGSGKTLLARALAGEAGCSFFQKSGSEFDEMFVGVGA 299 >gi|74147276|dbj|BAE27531.1| unnamed protein product [Mus musculus] Length = 433 Score = 43.2 bits (101), Expect = 0.036, Method: Composition-based stats. Identities = 31/215 (14%), Positives = 62/215 (28%), Gaps = 66/215 (30%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109 P + V+L GP G+GK+ A ++++ + I L + Sbjct: 208 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 267 Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147 + ++ID + + +IN + + + +LM Sbjct: 268 KACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 327 Query: 148 ------PVSW----GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P LPDL SR + KI R + +++ + Sbjct: 328 DPALMRPGRLDRKIEFSLPDLESR---THIFKIHA----------------RSMSVERDI 368 Query: 198 AAYIVQR-MERSLVF-AEKLVDKMDNLALSRGMGI 230 ++ R S + + A+ I Sbjct: 369 RFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKI 403 >gi|327350588|gb|EGE79445.1| 26S protease regulatory subunit 6A [Ajellomyces dermatitidis ATCC 18188] Length = 465 Score = 43.2 bits (101), Expect = 0.036, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 54/160 (33%), Gaps = 38/160 (23%) Query: 70 VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113 GP G+GK+ LA + ++ +T L + I ++ + Sbjct: 251 YGPPGTGKTLLARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPSIIFI 310 Query: 114 EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158 +++D + + ++N D ++ A L L Sbjct: 311 DELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRVKVLAATNRVDVLDPAL--L 368 Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 S RL ++ LP+++ +++ R++ +D + Sbjct: 369 RSGRLD--RKIEFPLPNEEARAQIL--RIHSRKMAVDDGV 404 >gi|301632691|ref|XP_002945415.1| PREDICTED: replication-associated recombination protein A-like [Xenopus (Silurana) tropicalis] Length = 435 Score = 43.2 bits (101), Expect = 0.036, Method: Composition-based stats. Identities = 38/197 (19%), Positives = 78/197 (39%), Gaps = 30/197 (15%) Query: 68 ILVGPSGSGKSCLANIWSDKSRSTRFS---------------NIAKSLDSILIDTRKPVL 112 IL GP G GK+ +A + ++ + S +A+ L R V Sbjct: 50 ILWGPPGVGKTTIARLMAEAFDAQFISISAVLGGVKDIRDAVQLAERARDGLAPQRTIVF 109 Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 ++++ + + F + + A T S+ V L SR ATV + Sbjct: 110 VDEVHRFNKSQQDAFLPH---VESGLFTFVGATTENPSFEVNSA-LLSR---ATVYVLQP 162 Query: 173 PDDDFLEKVIVKMFADRQI-FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG-- 229 D L++++ K A + + I+ + +V + A +L++ ++ L+++ G Sbjct: 163 LAADDLKQIVAKAQALQALPAIENEALERLVAYAD---GDARRLLNTLETLSVTAGQAQL 219 Query: 230 --ITRSLAAEVLKETQQ 244 +T + +VL E + Sbjct: 220 ATLTDAWLLQVLGERMR 236 >gi|210076057|ref|XP_505704.2| YALI0F21329p [Yarrowia lipolytica] gi|199424971|emb|CAG78513.2| YALI0F21329p [Yarrowia lipolytica] Length = 845 Score = 43.2 bits (101), Expect = 0.036, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 56/164 (34%), Gaps = 36/164 (21%) Query: 61 SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSIL 104 P V+ L GP G GK+ LA + ++ + S I + + Sbjct: 600 DAPGGVL-LWGPPGCGKTLLAKAVASETAANFISVRGPELLNKYVGESERAIRQVFERAA 658 Query: 105 IDTRKPVLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 + + + ++ D L +D L +N + + ++ A P Sbjct: 659 LSSPCIIFFDEFDSLAPRRDDGGSEHSSRLVNTLLTELNGLTERRGVYVIAATNRPDIID 718 Query: 153 --VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194 + P RL V + PD++ +++ K+ R + D Sbjct: 719 PAMVRP---GRLDKTLFVGL--PDENERFEILSKVCRKRPLAAD 757 >gi|156846683|ref|XP_001646228.1| hypothetical protein Kpol_1013p42 [Vanderwaltozyma polyspora DSM 70294] gi|156116902|gb|EDO18370.1| hypothetical protein Kpol_1013p42 [Vanderwaltozyma polyspora DSM 70294] Length = 430 Score = 43.2 bits (101), Expect = 0.036, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 60/153 (39%), Gaps = 44/153 (28%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P+ ++L GP G+GKS LA + ++ ST FS + L S + + ++ Sbjct: 159 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSISSSDLVSKWMGESERLVKQLFNMAREN 218 Query: 113 ------LEDIDLLDFND------------TQLFHIINSI-HQYDSSLLMTARTFPVSWG- 152 ++++D L T+L +N + + L++ A P Sbjct: 219 KPSIIFIDEVDALTGQRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDS 278 Query: 153 -----------VCLPDLCSRLKAATVVKISLPD 174 + LPDL +R K + +I++ D Sbjct: 279 AIRRRFERRIYIPLPDLAARTK---MFEINVAD 308 >gi|149240319|ref|XP_001526035.1| hypothetical protein LELG_02593 [Lodderomyces elongisporus NRRL YB-4239] gi|146450158|gb|EDK44414.1| hypothetical protein LELG_02593 [Lodderomyces elongisporus NRRL YB-4239] Length = 516 Score = 43.2 bits (101), Expect = 0.036, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 48/128 (37%), Gaps = 17/128 (13%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------LE 114 ++L+GP GSGK+ LA + + + I S ++ + K ++ ++ Sbjct: 57 PSMLLIGPPGSGKTTLARLVAKSCGYATSNIIELSATTLTTENIKNLVNDCQEQLVVFID 116 Query: 115 DIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 +I L L + +L+ A T + SR + + ++ Sbjct: 117 EIHRLSKVQQDWLL----PFVEDGKIVLIGATTLETPLRRIRKAILSRCQVFPLQRLH-- 170 Query: 174 DDDFLEKV 181 DD+ L + Sbjct: 171 DDELLSVL 178 >gi|126662272|ref|ZP_01733271.1| ATPase, AAA family protein [Flavobacteria bacterium BAL38] gi|126625651|gb|EAZ96340.1| ATPase, AAA family protein [Flavobacteria bacterium BAL38] Length = 428 Score = 43.2 bits (101), Expect = 0.036, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 50/136 (36%), Gaps = 24/136 (17%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS---------------TRFSNIAKSLDSILIDTRK 109 +IL GP G+GK+ LA I + +S+ AK + Sbjct: 40 PSLILWGPPGTGKTTLAQIMAQESKRPFYQLSAIHSGVKDIREVIEKAKQSSGLFTAKNP 99 Query: 110 PVLLEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168 + +++I + L + + L+ A T S+ V +P L SR V Sbjct: 100 ILFIDEIHRFSKSQQDSLL----AAVEKGWITLIGATTENPSFEV-IPALLSR---CQVY 151 Query: 169 KISLPDDDFLEKVIVK 184 ++ D LE ++ + Sbjct: 152 VLNAFTKDDLEALLHR 167 >gi|313207354|ref|YP_004046531.1| AAA ATPase central domain protein [Riemerella anatipestifer DSM 15868] gi|312446670|gb|ADQ83025.1| AAA ATPase central domain protein [Riemerella anatipestifer DSM 15868] gi|315023249|gb|EFT36259.1| ATPase, AAA family protein [Riemerella anatipestifer RA-YM] gi|325335187|gb|ADZ11461.1| the helicase subunit-like protein of the Holliday junction resolvase [Riemerella anatipestifer RA-GD] Length = 425 Score = 43.2 bits (101), Expect = 0.036, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 50/132 (37%), Gaps = 23/132 (17%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI---DLLDF 121 +IL GP G+GK+ LA I S++S F A S + +++D L Sbjct: 42 NSLILWGPPGTGKTTLAEILSEQSGRKFFKLSAVSSGVKEVRE----VIDDAKKQHLFSG 97 Query: 122 NDTQLF----HIIN--------SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 LF H N + +L+ A T S+ V L SR + V Sbjct: 98 KSPILFIDEIHRFNKSQQDSLLHAVEKGWVILIGATTENPSFEVVSA-LLSR---SQVYI 153 Query: 170 ISLPDDDFLEKV 181 + + LE++ Sbjct: 154 LKPLSYEKLEEL 165 >gi|312380412|gb|EFR26411.1| hypothetical protein AND_07557 [Anopheles darlingi] Length = 429 Score = 43.2 bits (101), Expect = 0.036, Method: Composition-based stats. Identities = 26/167 (15%), Positives = 58/167 (34%), Gaps = 38/167 (22%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V+L GP G+GK+ LA + +++ST L + I ++ Sbjct: 209 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 268 Query: 113 ------LEDIDLL---------DFNDTQ---LFHIINS---IHQYDSSLLMTARTFPVSW 151 ++++D + + + ++N D ++ A Sbjct: 269 APTIIFIDELDAIGTKRFDSEKAGDREAQRTMLELLNQMDGFSSADDIKVIAATNRVDIL 328 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L L S RL ++ P++ +V+ R++ + + Sbjct: 329 DPAL--LRSGRLD--RKIEFPHPNEQARARVMQ--IHSRKMNVSPDV 369 >gi|307108607|gb|EFN56847.1| hypothetical protein CHLNCDRAFT_51635 [Chlorella variabilis] Length = 694 Score = 43.2 bits (101), Expect = 0.036, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 59/172 (34%), Gaps = 43/172 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI----------------D 106 P V+LVGP G+GK+ LA + ++ FS A + + + Sbjct: 182 PPSGVLLVGPPGTGKTLLARAVAGEADVPFFSIAASEFVELYVGMGAMRVRELFATARKE 241 Query: 107 TRKPVLLEDIDLLD-FNDTQLFHIINSIHQYDSSLLMT-----------------ARTFP 148 V +++ID + D++L + N + + L+T A P Sbjct: 242 APAIVFIDEIDAVAKGRDSRLRSVGNDEREQTLNQLLTELDGFDTHRDNLVICIAATNRP 301 Query: 149 VSWGVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L L+ V + PD E+++ R + + + + Sbjct: 302 DVLDAAL------LRPGRFDRRVSVERPDKQGREEILRVHINQRGLPLGEDV 347 >gi|170062088|ref|XP_001866517.1| 26S protease regulatory subunit 6A [Culex quinquefasciatus] gi|167880127|gb|EDS43510.1| 26S protease regulatory subunit 6A [Culex quinquefasciatus] Length = 428 Score = 43.2 bits (101), Expect = 0.036, Method: Composition-based stats. Identities = 24/167 (14%), Positives = 59/167 (35%), Gaps = 38/167 (22%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V+L GP G+GK+ LA + +++ST L + I ++ Sbjct: 208 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 267 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151 ++++D + + + ++N + ++ A Sbjct: 268 SPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDIL 327 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L L S RL ++ P+++ +++ R++ + + Sbjct: 328 DPAL--LRSGRLD--RKIEFPHPNEEARARIMQ--IHSRKMNVSPDV 368 >gi|88797458|ref|ZP_01113047.1| ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Reinekea sp. MED297] gi|88779630|gb|EAR10816.1| ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Reinekea sp. MED297] Length = 330 Score = 43.2 bits (101), Expect = 0.036, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 13/85 (15%) Query: 42 DLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLD 101 D + + +AV + S P + L G SG GKS LA S+ + Sbjct: 17 DYVTDTGNARAVNQV-SLEIRPGETLGLAGESGCGKSTLAFAISNLHNA----------- 64 Query: 102 SILIDTRKPVLLEDIDLLDFNDTQL 126 + + +L ED D+L ND QL Sbjct: 65 -PALISEGEILFEDRDVLKMNDEQL 88 >gi|314938563|ref|ZP_07845847.1| recombination factor protein RarA [Enterococcus faecium TX0133a04] gi|314940908|ref|ZP_07847814.1| recombination factor protein RarA [Enterococcus faecium TX0133C] gi|314948071|ref|ZP_07851473.1| recombination factor protein RarA [Enterococcus faecium TX0082] gi|314952045|ref|ZP_07855068.1| recombination factor protein RarA [Enterococcus faecium TX0133A] gi|314991926|ref|ZP_07857381.1| recombination factor protein RarA [Enterococcus faecium TX0133B] gi|314995184|ref|ZP_07860298.1| recombination factor protein RarA [Enterococcus faecium TX0133a01] gi|313590593|gb|EFR69438.1| recombination factor protein RarA [Enterococcus faecium TX0133a01] gi|313593510|gb|EFR72355.1| recombination factor protein RarA [Enterococcus faecium TX0133B] gi|313595835|gb|EFR74680.1| recombination factor protein RarA [Enterococcus faecium TX0133A] gi|313600266|gb|EFR79109.1| recombination factor protein RarA [Enterococcus faecium TX0133C] gi|313642120|gb|EFS06700.1| recombination factor protein RarA [Enterococcus faecium TX0133a04] gi|313645487|gb|EFS10067.1| recombination factor protein RarA [Enterococcus faecium TX0082] Length = 459 Score = 43.2 bits (101), Expect = 0.037, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 67/178 (37%), Gaps = 32/178 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117 +IL GP G+GK+ +A+ + + + R N A + + +LL+++ Sbjct: 73 MILYGPPGTGKTSIASAIAGSTNYAFRMLNAATDSKKDLQVVAEEAKMSGTVILLLDEVH 132 Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 LD D L H+ + +L+ A T + P + SR + ++ + Sbjct: 133 RLDKTKQDFLLPHL-----ESGRIILIGATTENPYITIN-PAIRSR---TQIFEVKPLTE 183 Query: 176 DFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLV-FAEKLVDKMDNLALS 225 ++ + D R + +D+ + + R+ ++ ++ LS Sbjct: 184 QDIQLAVEHALRDKERGLGQQAIQLDEDA----LLHLSRATNGDLRSALNGLELATLS 237 >gi|312868564|ref|ZP_07728759.1| ABC transporter, ATP-binding protein [Lactobacillus oris PB013-T2-3] gi|311095861|gb|EFQ54110.1| ABC transporter, ATP-binding protein [Lactobacillus oris PB013-T2-3] Length = 251 Score = 43.2 bits (101), Expect = 0.037, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 16/111 (14%) Query: 66 VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125 V ++G SG+GKS L NI + ++T S + D + D F Sbjct: 36 YVAIMGESGAGKSTLLNIIATLDKATNGSAVLNGQDLGELGKD--------DAARFRREH 87 Query: 126 L---FHIINSI----HQYDSSL-LMTARTFPVSWGVCLPDLCSRLKAATVV 168 L F N + ++ + L L+ A+T P + L SRL+ A ++ Sbjct: 88 LGFVFQRFNLLDSLSNRDNIYLPLVLAKTKPAEMERRVKPLASRLRIAPII 138 >gi|291287827|ref|YP_003504643.1| AAA ATPase central domain protein [Denitrovibrio acetiphilus DSM 12809] gi|290884987|gb|ADD68687.1| AAA ATPase central domain protein [Denitrovibrio acetiphilus DSM 12809] Length = 426 Score = 43.2 bits (101), Expect = 0.037, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 56/136 (41%), Gaps = 20/136 (14%) Query: 67 VILVGPSGSGKSCLANI--------WSDKSRSTRFSNIAKSLDSILIDTRKPVL--LEDI 116 V+LVGP G+GK+ LA I + +T S K + K VL ++++ Sbjct: 40 VVLVGPPGTGKTTLAEIIGKHLNMPYFSLHAATAGSGDLKQIMESARHAGKTVLVFVDEL 99 Query: 117 DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 + L ++N I + L+ + P + P L SR + V ++ + Sbjct: 100 HRFNKTQQVL--LLNMIDSGLAKLIGASTENPYH-NLIQP-LRSR---SFVFRLERLEKP 152 Query: 177 FLEKVIVK---MFADR 189 L+++ K F +R Sbjct: 153 DLKELFEKVKLYFKER 168 >gi|303273578|ref|XP_003056149.1| cell division cycle protein 48 [Micromonas pusilla CCMP1545] gi|226462233|gb|EEH59525.1| cell division cycle protein 48 [Micromonas pusilla CCMP1545] Length = 823 Score = 43.2 bits (101), Expect = 0.037, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 34/74 (45%), Gaps = 16/74 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP GSGK+ +A ++++ + F SN+ K+ + + Sbjct: 242 PPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 301 Query: 107 TRKPVLLEDIDLLD 120 + +++ID + Sbjct: 302 APAIIFIDEIDSIA 315 Score = 40.1 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 515 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 571 >gi|116620085|ref|YP_822241.1| Holliday junction DNA helicase RuvB [Candidatus Solibacter usitatus Ellin6076] gi|122255536|sp|Q02AG6|RUVB_SOLUE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|116223247|gb|ABJ81956.1| Holliday junction DNA helicase subunit RuvB [Candidatus Solibacter usitatus Ellin6076] Length = 344 Score = 43.2 bits (101), Expect = 0.037, Method: Composition-based stats. Identities = 35/197 (17%), Positives = 72/197 (36%), Gaps = 25/197 (12%) Query: 67 VILVGPSGSGKSCLANIWSDK--------SRSTRFSNIAKSLDSILIDTRKPVLLEDIDL 118 V+L GP G GK+ LA+I +++ S + + I + +++I Sbjct: 57 VLLYGPPGLGKTTLASIIAEELQVQFTPTSGPVLQKKLDLTGILSNIRLHQVFFIDEIHR 116 Query: 119 LDFN-DTQLFHIINSIH----------QYDSSLLM---TARTFPVSWGVCLPDLCSRLKA 164 L + + L+ + SL M TA G+ L R Sbjct: 117 LLPDVEEMLYSALEDFRVDILVGVGPGARTHSLPMPKFTAIGATTRQGLVSAPLRGRF-- 174 Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNLA 223 V+++ + + L+ ++ + + I+ A I +R + A +L+ ++ D Sbjct: 175 GLVLRLDPYNTEELKAIVKRSARLLTVEIEDGAAEEIARRCRGTPRIANRLLRRVRDYAQ 234 Query: 224 LSRGMGITRSLAAEVLK 240 + I + +A L Sbjct: 235 VRADGRINQKVAQTALN 251 >gi|304385275|ref|ZP_07367620.1| AAA family ATPase [Pediococcus acidilactici DSM 20284] gi|304328482|gb|EFL95703.1| AAA family ATPase [Pediococcus acidilactici DSM 20284] Length = 425 Score = 42.8 bits (100), Expect = 0.037, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 65/169 (38%), Gaps = 27/169 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117 +IL GP G+GK+ +A+ + ++ + R N A + + +LL++I Sbjct: 41 MILYGPPGTGKTSIASAIAGSTKYAFRMLNAATDSKKQLQIVAEEAKMSGTVVLLLDEIH 100 Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 LD D L H+ + +L+ A T + P + SR + ++ Sbjct: 101 RLDKTKQDFLLPHL-----ESGQIILIGATTENPYININ-PAIRSR---TQIFEVKPLTP 151 Query: 176 DFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVD 217 +++ + D Q + +D+ ++ + L A V+ Sbjct: 152 ADIKEAVEMALQDSQRGLGDLPLQMDENALQFVSKATGGDLRSALNAVE 200 >gi|291224570|ref|XP_002732276.1| PREDICTED: spastin-like [Saccoglossus kowalevskii] Length = 574 Score = 42.8 bits (100), Expect = 0.037, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 69/170 (40%), Gaps = 37/170 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P+R ++L GP G+GK+ LA + +S +T F+ A +L S + + ++ Sbjct: 331 PARGLLLFGPPGNGKTLLAKAVAHESNATFFNISASTLTSKYVGEGEKLVRAMFAVAREL 390 Query: 113 ------LEDIDLLDFNDTQLFH----------IIN----SIHQYDSSLLMTARTFPVSWG 152 +++ID L + H ++ + D L+M A P Sbjct: 391 QPSIVFIDEIDSLLCERREGEHEASRRLKTEFLLEFDGVHANSDDRLLVMGATNRPQELD 450 Query: 153 VCLPDLCSRLKAAT-VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 + L+ V +S+PD +++I ++ + Q + ++ ++ Sbjct: 451 DAV------LRRFPKRVYVSVPDKQARKQLIRQLLSKHQNPLSERELEHL 494 >gi|260437226|ref|ZP_05791042.1| ATPase, AAA family [Butyrivibrio crossotus DSM 2876] gi|292810539|gb|EFF69744.1| ATPase, AAA family [Butyrivibrio crossotus DSM 2876] Length = 446 Score = 42.8 bits (100), Expect = 0.037, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 56/157 (35%), Gaps = 28/157 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I GP G+GK+ LA + ++ + + + + + +DI T Sbjct: 55 IIFYGPPGTGKTTLAKVIANTTSASFRQINATVAGKKDMEDVVNGA---KDIMASMGQRT 111 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + + +L+ A T + V L SR + V ++ Sbjct: 112 ILFVDEIHRFNKGQQDYLLPYVEDGTIILIGATTENPYFEVNKA-LISR---SVVFELKP 167 Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIV 202 + + + +I D R + ID A ++ Sbjct: 168 LEKEDILSIIKTAVYDTKRGMGNYNAVIDDDAAEFLA 204 >gi|308233738|ref|ZP_07664475.1| Recombination protein MgsA [Atopobium vaginae DSM 15829] gi|328943727|ref|ZP_08241192.1| AAA family ATPase [Atopobium vaginae DSM 15829] gi|327491696|gb|EGF23470.1| AAA family ATPase [Atopobium vaginae DSM 15829] Length = 475 Score = 42.8 bits (100), Expect = 0.037, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 68/175 (38%), Gaps = 27/175 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS-----NIAKSLDSILIDTRKPVLLEDIDLLDF 121 +IL GP G+GK+ LA I + S + K + L R +L+ ++ + F Sbjct: 81 IILYGPPGTGKTTLAQIIAHTSSAHFVDLSALLARVKDVREELAQARSRLLITNVKTIMF 140 Query: 122 NDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 D H + + +L+ A T + V L SR + +++++ Sbjct: 141 IDEI--HRFSRSQQDSLLKGVENRDVILIGATTENPYFEVNSA-LISR---SKIIELTRL 194 Query: 174 DDDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 DD + +I + D R + +D+ ++ M S A + ++ + Sbjct: 195 SDDDIACIIARALTDSRGLNNCFTLDESALQALI-YM--SAGDARAALTSLELAS 246 >gi|225019550|ref|ZP_03708742.1| hypothetical protein CLOSTMETH_03503 [Clostridium methylpentosum DSM 5476] gi|226325667|ref|ZP_03801185.1| hypothetical protein COPCOM_03480 [Coprococcus comes ATCC 27758] gi|283796483|ref|ZP_06345636.1| replicative DNA helicase [Clostridium sp. M62/1] gi|290969254|ref|ZP_06560779.1| IstB-like ATP binding protein [Megasphaera genomosp. type_1 str. 28L] gi|331004534|ref|ZP_08328003.1| hypothetical protein HMPREF0491_02865 [Lachnospiraceae oral taxon 107 str. F0167] gi|224947695|gb|EEG28904.1| hypothetical protein CLOSTMETH_03503 [Clostridium methylpentosum DSM 5476] gi|225205791|gb|EEG88145.1| hypothetical protein COPCOM_03480 [Coprococcus comes ATCC 27758] gi|290780760|gb|EFD93363.1| IstB-like ATP binding protein [Megasphaera genomosp. type_1 str. 28L] gi|291075895|gb|EFE13259.1| replicative DNA helicase [Clostridium sp. M62/1] gi|295090348|emb|CBK76455.1| phage DNA replication protein (predicted replicative helicase loader) [Clostridium cf. saccharolyticum K10] gi|295100562|emb|CBK98107.1| phage DNA replication protein (predicted replicative helicase loader) [Faecalibacterium prausnitzii L2-6] gi|330410642|gb|EGG90066.1| hypothetical protein HMPREF0491_02865 [Lachnospiraceae oral taxon 107 str. F0167] Length = 280 Score = 42.8 bits (100), Expect = 0.037, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 50/130 (38%), Gaps = 28/130 (21%) Query: 50 EQAVRLIDSWPS-WPSRVVIL-VGPSGSGKSCLANIWSDKSR-----------STRFSNI 96 A R ++ W + L G G+GKS LA ++ + +++ Sbjct: 111 GLARRYVEHWEDMRTDNIGCLFWGGVGTGKSYLAGCIANALMEKEIPVRMTNFALILNDL 170 Query: 97 AKSLDSI-----LIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFP 148 A S + + ++L+D + + Q+F++I+S ++ L++T Sbjct: 171 AASFEGRNEYISRLCRYPLLILDDFGMERGTEYGLEQVFNVIDSRYRSGKPLIVTT---- 226 Query: 149 VSWGVCLPDL 158 + L DL Sbjct: 227 ---NLTLDDL 233 >gi|84367998|dbj|BAE69156.1| ATPase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 430 Score = 42.8 bits (100), Expect = 0.037, Method: Composition-based stats. Identities = 39/200 (19%), Positives = 67/200 (33%), Gaps = 31/200 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125 +IL GP G GK+ LA + + + + F+ I+ L + + VL E Sbjct: 34 MILWGPPGCGKTTLALLLAHYADAE-FNAISAVLSG--LPEVRQVLAEAAQRFAGGRRTV 90 Query: 126 LF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKIS 171 LF H N Q ++L T L SR + + +S Sbjct: 91 LFVDEVHRFNKAQQDAFLPHIERGTILFVGATTENPSFELNSA---LLSRCRVHVLEGVS 147 Query: 172 LPD--DDFLEKVIVKMFADRQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 D + + A+R + + + I + + A L++ LA Sbjct: 148 PQDIVEALQRAL---HDAERGLGQQTIQVSEASLLEIASAADGDVRRALTLLEIAAELAT 204 Query: 225 SRGMGITRSLAAEVLKETQQ 244 G IT +VL + + Sbjct: 205 GEGGEITPRTLLQVLADRTR 224 >gi|148244014|ref|YP_001220252.1| IstB ATP binding domain-containing protein [Acidiphilium cryptum JF-5] gi|146400577|gb|ABQ29110.1| IstB domain protein ATP-binding protein [Acidiphilium cryptum JF-5] Length = 291 Score = 42.8 bits (100), Expect = 0.037, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 22/109 (20%) Query: 70 VGPSGSGKSCLANI---------WS-------DKSRSTRFSNIAKSLDSIL--IDTRKPV 111 GP G GKS LA W D + + + +L++ + +D + Sbjct: 113 FGPPGGGKSHLAAAIGLALVENGWRVLFTRTSDLVQKLQIARRELALEATIAKLDKFHLL 172 Query: 112 LLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 +L+D+ + + + LF +I S SL++TA WG PD Sbjct: 173 ILDDLAYVTKDQAETSVLFELI-SARYERRSLMITANQPFGEWGKVFPD 220 >gi|326385130|ref|ZP_08206799.1| LuxR family transcriptional regulator [Gordonia neofelifaecis NRRL B-59395] gi|326196163|gb|EGD53368.1| LuxR family transcriptional regulator [Gordonia neofelifaecis NRRL B-59395] Length = 856 Score = 42.8 bits (100), Expect = 0.037, Method: Composition-based stats. Identities = 40/206 (19%), Positives = 70/206 (33%), Gaps = 42/206 (20%) Query: 66 VVILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPV-LLEDIDLLDFN 122 +++ PSG GKS + S+ + R R + A+ + L D V L++D D D N Sbjct: 29 FILITAPSGGGKSTVLRRLSETLRGRGVRVAGGAEHDPASLFDGAPAVLLIDDADRSDPN 88 Query: 123 DTQLFHIINSIH-QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 H + S ++TA + LPD +++ D Sbjct: 89 TLHRLHELADARPDAPVSTVLTADAATSAIADLLPD---------TMRLPGLD----RSA 135 Query: 182 IVKMFADRQIFIDKKLA----------------------AYIVQRMERSLVFAEKLVDKM 219 + ++ R + L + R + SL ++V ++ Sbjct: 136 VAEIALRRGRAVHPSLIDELTRHTAGRPREIVELLDELPDRLWSRADASLPAPRRVVAEV 195 Query: 220 DNLALSRGMGITRSL--AAEVLKETQ 243 L+ TRSL A VL + Sbjct: 196 -RAGLAECRPETRSLIEAIAVLNAPE 220 >gi|322487941|emb|CBZ23187.1| putative 26S protease regulatory subunit [Leishmania mexicana MHOM/GT/2001/U1103] Length = 396 Score = 42.8 bits (100), Expect = 0.037, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + + +A S+ I V+ E Sbjct: 173 PPKGVLLYGPPGTGKTLLAKAIAANVDAAFLKIVASSIVDKYIGESARVIRE 224 >gi|299744108|ref|XP_001840883.2| AAA family ATPase [Coprinopsis cinerea okayama7#130] gi|298405968|gb|EAU80936.2| AAA family ATPase [Coprinopsis cinerea okayama7#130] Length = 789 Score = 42.8 bits (100), Expect = 0.037, Method: Composition-based stats. Identities = 11/31 (35%), Positives = 19/31 (61%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF 93 P R ++L GP G+GK+ LA + ++S+ Sbjct: 279 PPRGILLHGPPGTGKTHLARAIASSTQSSVL 309 >gi|199599229|ref|ZP_03212631.1| recombination factor protein RarA [Lactobacillus rhamnosus HN001] gi|258507184|ref|YP_003169935.1| recombination factor protein RarA [Lactobacillus rhamnosus GG] gi|199589910|gb|EDY98014.1| recombination factor protein RarA [Lactobacillus rhamnosus HN001] gi|257147111|emb|CAR86084.1| AAA ATPase [Lactobacillus rhamnosus GG] gi|259648554|dbj|BAI40716.1| recombination factor protein RarA [Lactobacillus rhamnosus GG] Length = 448 Score = 42.8 bits (100), Expect = 0.037, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 21/138 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI-----------LIDTRKPVLL 113 +I GP G GK+ LA I + ++++ FS + + I + + V + Sbjct: 51 MIFWGPPGVGKTTLARIIARRTQAQFVTFSAVTSGIKEIKQVMKEAEQNRELGQKTIVFV 110 Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 ++I + F + S +L+ A T S+ V L SR + V + Sbjct: 111 DEIHRFNKAQQDAFLPY---VERGSIILIGATTENPSFEVNAA-LLSRTR---VFVLHGL 163 Query: 174 DDDFLEKVIVKMFAD-RQ 190 L ++ + D R Sbjct: 164 TSAELVDLLQRALKDPRG 181 >gi|114605194|ref|XP_001159632.1| PREDICTED: ATPase WRNIP1 isoform 3 [Pan troglodytes] Length = 665 Score = 42.8 bits (100), Expect = 0.037, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 16/83 (19%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA+I + S+ + S + + + D+ N+ Sbjct: 262 PSLILWGPPGCGKTTLAHIIASNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 316 Query: 125 QLF-----------HIINSIHQY 136 F H N Q Sbjct: 317 SFFKRKTILFIDEIHRFNKSQQD 339 >gi|62898918|dbj|BAD97313.1| Werner helicase interacting protein isoform 1 variant [Homo sapiens] Length = 665 Score = 42.8 bits (100), Expect = 0.037, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 16/83 (19%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA+I + S+ + S + + + D+ N+ Sbjct: 262 PSLILWGPPGCGKTTLAHIIASNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 316 Query: 125 QLF-----------HIINSIHQY 136 F H N Q Sbjct: 317 SFFKRKTILFIDEIHRFNKSQQD 339 >gi|146297065|ref|YP_001180836.1| recombination factor protein RarA [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410641|gb|ABP67645.1| Recombination protein MgsA [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 444 Score = 42.8 bits (100), Expect = 0.037, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 59/138 (42%), Gaps = 23/138 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL---LDFND 123 +IL GP G+GK+ +A++ + + F +I ++ I + ++E+ L Sbjct: 55 IILYGPPGTGKTTIAHVIAQVTN-NIFKSINATIAGINDIKK---IIEEAKLEFSQGGRR 110 Query: 124 TQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 T LF H N + + +L+ A T + V L SR + V ++ Sbjct: 111 TILFIDEIHRFNKLQQDALLPSVEEGIIVLIGATTENPFYEVNKA-LVSR---SLVFELF 166 Query: 172 LPDDDFLEKVIVKMFADR 189 ++ + K+I + +D+ Sbjct: 167 PLKEEDIIKIINRAISDK 184 >gi|71029248|ref|XP_764267.1| replication factor C [Theileria parva strain Muguga] gi|68351221|gb|EAN31984.1| replication factor C, putative [Theileria parva] Length = 1193 Score = 42.8 bits (100), Expect = 0.037, Method: Composition-based stats. Identities = 48/219 (21%), Positives = 87/219 (39%), Gaps = 51/219 (23%) Query: 40 RDDLLVHSA-IEQAVRLIDSWP---------SWPSRVVILVG-PSGSGKSCLANIWSD-- 86 DLL + +R + SW P ++L+G P G GK+ L N+ + Sbjct: 581 FSDLLTSENVNLECLRWLSSWKCSSNYLDKYEEPEHKILLIGGPPGVGKTSLVNVIAKHC 640 Query: 87 --------------KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINS 132 K R+ N S S++ + LLED+D L ++ Q II+ Sbjct: 641 GYNVVEINSSDDRTKGRAIPIINGVISAGSVVPNKPNLCLLEDVDTLFGSELQ---IISY 697 Query: 133 IHQYDSSLLMTARTFPVSWG-VCLP------DLCSR----LKAAT-VVKISLPDDDFLEK 180 + Q ++++ P + P D+ SR L+ + VV I D L+ Sbjct: 698 LKQ------ISSKKHPKGGHFIKRPIICTCIDVYSRQLKELRDVSKVVIIDTCDPSVLQS 751 Query: 181 VIVKMFADRQIFIDKKLAAYIVQ--RME-RSLVFAEKLV 216 I + + I++ +L I++ R + RS + + + + Sbjct: 752 RIEWVLDEEGIYMADELIKEILETYRYDIRSCLTSMEFI 790 >gi|319792075|ref|YP_004153715.1| aaa atpase central domain protein [Variovorax paradoxus EPS] gi|315594538|gb|ADU35604.1| AAA ATPase central domain protein [Variovorax paradoxus EPS] Length = 430 Score = 42.8 bits (100), Expect = 0.038, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 68/176 (38%), Gaps = 26/176 (14%) Query: 68 ILVGPSGSGKSCLANIWSDKSRSTRFS---------------NIAKSLDSILIDTRKPVL 112 IL GP G+GK+ +A + +D + S A + L R V Sbjct: 47 ILWGPPGTGKTTIARLMADAFDAQFLSISAVLGGVKDIREAVERATAARDGLEQRRTIVF 106 Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 ++++ + + F + + A T S+ V L SR A V + Sbjct: 107 VDEVHRFNKSQQDAFLPH---VESGLFTFIGATTENPSFEVNSA-LLSR---AAVYVLQP 159 Query: 173 PDDDFLEKVIVKMFADRQI-FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 + LE+++ K + + + ID+ +V + A +L++ ++ LA++ Sbjct: 160 LTEGDLEQIVAKAQSIQAVPAIDETAIDRLVAYAD---GDARRLLNTLETLAVAAR 212 >gi|281355534|ref|ZP_06242028.1| Holliday junction DNA helicase RuvB [Victivallis vadensis ATCC BAA-548] gi|281318414|gb|EFB02434.1| Holliday junction DNA helicase RuvB [Victivallis vadensis ATCC BAA-548] Length = 341 Score = 42.8 bits (100), Expect = 0.038, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 53/135 (39%), Gaps = 18/135 (13%) Query: 3 LMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRD-DLLVHSAIEQAVRLIDSWPS 61 + + P ++ + +P FP + +L VH+A + +D Sbjct: 5 FITSTLNKKDPARETSLRPPKFA-----DFPGQDRVKEQLELFVHAAKAR-EEALDH--- 55 Query: 62 WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 ++L GP G GK+ LA I +++ + S+ +++ LE D+L Sbjct: 56 -----ILLCGPPGLGKTTLAYIIANERGTNLKSSSGPAIEKPGDLAGLLTALEPGDVLFI 110 Query: 122 NDTQLFHIINSIHQY 136 ++ H +NS + Sbjct: 111 DEI---HRLNSTVEE 122 >gi|254508488|ref|ZP_05120607.1| ATPase, AAA family [Vibrio parahaemolyticus 16] gi|219548600|gb|EED25606.1| ATPase, AAA family [Vibrio parahaemolyticus 16] Length = 428 Score = 42.8 bits (100), Expect = 0.038, Method: Composition-based stats. Identities = 44/199 (22%), Positives = 67/199 (33%), Gaps = 38/199 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G+GK+ LA + ++ + + A + I E+ L T L Sbjct: 34 MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIERAREN--KLAGRRTIL 91 Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172 F H N Q D ++ T L SR A V K++ Sbjct: 92 FVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKLTS 145 Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIV------QRMERSLVFAEKLVDKM 219 + + + D R + D+ + + RM SL + E L D Sbjct: 146 LSQQDIGLALQQAINDEKRGLGKVEAAFDEGVLDRLSELVNGDARM--SLNYLELLYDMA 203 Query: 220 DNLALSRGMGITRSLAAEV 238 + A IT L AEV Sbjct: 204 EEDA-QGVKVITLPLLAEV 221 >gi|242279432|ref|YP_002991561.1| recombination factor protein RarA [Desulfovibrio salexigens DSM 2638] gi|242122326|gb|ACS80022.1| AAA ATPase central domain protein [Desulfovibrio salexigens DSM 2638] Length = 420 Score = 42.8 bits (100), Expect = 0.038, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 61/163 (37%), Gaps = 16/163 (9%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSIL--IDTRKPVLLEDIDLLD 120 ++L GP G GKS LA + + + R S + ++ + ++L+++ Sbjct: 43 PSLLLFGPPGCGKSTLAMLLAKSTGRHFMRISAPESGITALRKQLAGMDILILDELHRFS 102 Query: 121 FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 F I + L+ T S+ V L SRL V+++ L Sbjct: 103 KAQQDFFLPI---LESGEITLLATTTENPSFSVTRQ-LLSRL---HVLRLRSLGKTDLLA 155 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRM----ERSLVFAEKLVDKM 219 + + + +I + + ++ M RSL+ + ++ Sbjct: 156 ICNRACEELEIELSEDSLN-LITSMAGGDGRSLLNLLEYTSQL 197 >gi|170594441|ref|XP_001901972.1| Probable 26S protease regulatory subunit 4 [Brugia malayi] gi|158590916|gb|EDP29531.1| Probable 26S protease regulatory subunit 4, putative [Brugia malayi] Length = 422 Score = 42.8 bits (100), Expect = 0.038, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 65/183 (35%), Gaps = 26/183 (14%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + VIL G G+GK+ LA ++++ +T + + ID V + D Sbjct: 229 PPKGVILYGCPGTGKTLLAKAVANQTSATFL-----RVSIVFIDEIDAVGTKRYDSNSGG 283 Query: 123 DTQL----FHIINSIH----QYDSSLLMTA----RTFPVSWGVCLPDLCSRLKAATVVKI 170 + ++ ++N + + D +LM P D ++ Sbjct: 284 EREIQRTMLELLNQLDGFDSRGDVKVLMATNRIDSLDPALIRPGRIDRK--------IEF 335 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM-G 229 LPD+ ++ + + D L +I + E S + + + LAL Sbjct: 336 PLPDEKTKRRIFQIHTSRMTLANDVDLDEFIAAKDELSGADIKAMCTEAGLLALRERRMR 395 Query: 230 ITR 232 +T Sbjct: 396 VTM 398 >gi|59711514|ref|YP_204290.1| recombination factor protein RarA [Vibrio fischeri ES114] gi|59479615|gb|AAW85402.1| recombination protein [Vibrio fischeri ES114] Length = 448 Score = 42.8 bits (100), Expect = 0.038, Method: Composition-based stats. Identities = 40/200 (20%), Positives = 78/200 (39%), Gaps = 40/200 (20%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST-------------RFSNIAKSLDSILIDTRKPVLL 113 +IL GP G+GK+ LA + ++ + + + I K+ ++ + R + + Sbjct: 54 MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKDIRAAIEKAKENQITGRRTIMFV 113 Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++ + + F HI + + + A T S+ + L SR A V K+ Sbjct: 114 DEVHRFNKSQQDAFLPHI-----EDGTITFIGATTENPSFELNNA-LLSR---ARVYKLK 164 Query: 172 LPDDDFLEKVIVKMF--ADRQI-----FIDKKLAAYIV------QRMERSLVFAEKLVDK 218 + + + +VI + DR + + + + RM SL + E L D Sbjct: 165 SLEKEDIVQVIDQALLDKDRGLNDENFVLPDDVKLQLADLVSGDARM--SLNYLELLHDM 222 Query: 219 MDNLALSRGMGITRSLAAEV 238 + A + L AEV Sbjct: 223 AEENA-QGKKVVDLPLLAEV 241 >gi|307110563|gb|EFN58799.1| hypothetical protein CHLNCDRAFT_140589 [Chlorella variabilis] Length = 841 Score = 42.8 bits (100), Expect = 0.038, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 66/182 (36%), Gaps = 53/182 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP GSGK+ +A ++++ + F SN+ K+ + + Sbjct: 248 PPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 307 Query: 107 TRKPVLLEDIDLLD-------FNDTQ-----------------------LFHIINSIHQY 136 + +++ID + ++ L +++ + Sbjct: 308 APAIIFIDEIDSIAPKREKTQASEEAWGQGCGDGLERAKGEVERRIVSQLLTLMDGLKSR 367 Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195 ++M A P S P L R + + I +PD+ +V+ R + +D+ Sbjct: 368 SHVIVMGATNRPNSID---PALR-RFGRFDREIDIGVPDEIGRLEVL--RIHTRNMKLDE 421 Query: 196 KL 197 + Sbjct: 422 DV 423 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 539 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 595 >gi|298715833|emb|CBJ28298.1| conserved unknown protein [Ectocarpus siliculosus] Length = 394 Score = 42.8 bits (100), Expect = 0.038, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + +T +A ++ I V+ E Sbjct: 171 PPKGVLLYGPPGTGKTLLARALASNINATFLKVVASAIVDKYIGESARVVRE 222 >gi|260909479|ref|ZP_05916183.1| replication-associated recombination protein A [Prevotella sp. oral taxon 472 str. F0295] gi|260636404|gb|EEX54390.1| replication-associated recombination protein A [Prevotella sp. oral taxon 472 str. F0295] Length = 424 Score = 42.8 bits (100), Expect = 0.038, Method: Composition-based stats. Identities = 42/209 (20%), Positives = 70/209 (33%), Gaps = 47/209 (22%) Query: 39 SRDDL-----LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--SRST 91 S DD LV +I++ IL GP G GK+ LA I + K + Sbjct: 13 SLDDYVGQKHLVGP-NAVLRNMIEA---GRIPSFILWGPPGVGKTTLAQIVAKKLETPFY 68 Query: 92 RFSNIAKSLDSI-----------LIDTRKPVL-LEDIDLLDFNDT-QLFHIINSIHQYDS 138 S + + + + P+L +++I + L + Sbjct: 69 TLSAVTSGVKDVREVIEKAKGGRFFGSHSPILFIDEIHRFSKSQQDSLL----GAVEKGI 124 Query: 139 SLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM------FADRQIF 192 L+ A T S+ V P L SR + + + LE +I + R I Sbjct: 125 VTLIGATTENPSFEVIRP-LLSR---CQLYVLQSLSKEDLEDLIERALKTDVSLQQRHIE 180 Query: 193 IDK--KLAAYIVQRMERSLVFAEKLVDKM 219 + + L Y S A KL++ + Sbjct: 181 VKENAALIRY-------SGGDARKLLNIL 202 >gi|296130791|ref|YP_003638041.1| AAA ATPase central domain protein [Cellulomonas flavigena DSM 20109] gi|296022606|gb|ADG75842.1| AAA ATPase central domain protein [Cellulomonas flavigena DSM 20109] Length = 466 Score = 42.8 bits (100), Expect = 0.038, Method: Composition-based stats. Identities = 34/143 (23%), Positives = 54/143 (37%), Gaps = 23/143 (16%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRST---RFSNIAKSLDSILIDTRKP-----VLLEDI 116 R V+L GP G+GK+ +S S A L ++ +T + V+LED Sbjct: 255 RGVLLYGPPGTGKTHTVRHLVGESPGVTVILLSGQALQLVTVATETARALQPAMVVLEDC 314 Query: 117 DLLD------FNDTQLFHIIN----SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA- 165 DL+ + LF +++ D + L+T V P L R Sbjct: 315 DLVAEERSMHGSSPVLFEVLDALDGLASDADVTFLLTTNRA----DVLEPALAQRPGRVD 370 Query: 166 TVVKISLPDDDFLEKVIVKMFAD 188 V++ LPD ++ AD Sbjct: 371 LAVEVPLPDAAGRRRLFRLYAAD 393 >gi|221480962|gb|EEE19376.1| hypothetical protein TGGT1_094980 [Toxoplasma gondii GT1] Length = 592 Score = 42.8 bits (100), Expect = 0.038, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 68/184 (36%), Gaps = 44/184 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 371 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKMVRDAFELAKEK 430 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151 ++++D + + ++N + D ++ A P Sbjct: 431 APAIIFIDELDAIGTKRFDSELSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRPDVL 490 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL +++ P+++ E+++ R++ ++K+ + R L Sbjct: 491 DPAL--LRSGRLD--RKIELPHPNEEARERILQIHA--RKMNVNKEDVNF------RELA 538 Query: 211 FAEK 214 A Sbjct: 539 RATD 542 >gi|160331385|ref|XP_001712400.1| prsS6A [Hemiselmis andersenii] gi|159765848|gb|ABW98075.1| prsS6A [Hemiselmis andersenii] Length = 410 Score = 42.8 bits (100), Expect = 0.038, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G GK+ LA + ++++T L + I ++ E Sbjct: 190 PPKGVLLHGPPGMGKTLLARACASQTKATFLKLAGPQLVQMYIGEGASLIRE 241 >gi|110667503|ref|YP_657314.1| proteasome-activating nucleotidase [Haloquadratum walsbyi DSM 16790] gi|109625250|emb|CAJ51672.1| proteasome-activating nucleotidase 2 [Haloquadratum walsbyi DSM 16790] Length = 405 Score = 42.8 bits (100), Expect = 0.038, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 29/64 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P V+L GP G+GK+ LA ++++ ++ L I ++ + ++ N Sbjct: 182 PPSGVLLYGPPGTGKTMLAKAVANQTDASFIKMAGSELVHKFIGEGAKLVRDLFEVAREN 241 Query: 123 DTQL 126 + + Sbjct: 242 EPAV 245 >gi|85717050|ref|ZP_01048012.1| putative transposase [Nitrobacter sp. Nb-311A] gi|85696174|gb|EAQ34070.1| putative transposase [Nitrobacter sp. Nb-311A] Length = 230 Score = 42.8 bits (100), Expect = 0.038, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 22/110 (20%) Query: 64 SRVVILVGPSGSGKSCLANIWS-------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 R V+LVG +G+GK+ LA + + R ++ L+ + R+ L E + Sbjct: 98 QRNVVLVGGTGTGKTHLAIAIARSCIRSGARGRFYNVVDLVNRLEIETRNGRQGRLAEHL 157 Query: 117 ---DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 D + ++ LFH+++ +++ +S+++T W Sbjct: 158 TRMDFIVLDELGYLPFAQSGGQLLFHLVSRLYER-ASVIVTTNLAFGEWP 206 >gi|83854945|ref|ZP_00948475.1| ATPase, AAA family protein [Sulfitobacter sp. NAS-14.1] gi|83842788|gb|EAP81955.1| ATPase, AAA family protein [Sulfitobacter sp. NAS-14.1] Length = 435 Score = 42.8 bits (100), Expect = 0.038, Method: Composition-based stats. Identities = 34/204 (16%), Positives = 72/204 (35%), Gaps = 27/204 (13%) Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDID 117 S +I GP G GK+ +A + +D++ + S I + + I Sbjct: 49 QSGSLGSLIFWGPPGVGKTTIARLLADETDLHFVQISAIFSGVPELRKVFDAA----KIR 104 Query: 118 LLDFNDTQLF----HIINSIHQYD-------SSLLM---TARTFPVSWGVCLPDLCSRLK 163 + T LF H N Q ++L+ T + SR + Sbjct: 105 RQNGQGTLLFVDEIHRFNKAQQDGFLPHMEDGTILLVGATTENPSFELNAAV---LSRSQ 161 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + ++ L D + L + K R + +D +++ + L++++ A Sbjct: 162 VLVLERLPLSDLERLAQRAEKELG-RGLPLDGPARENLLEMADGDGRALLNLIEQV--AA 218 Query: 224 LSRGMGIT-RSLAAEVLKETQQCD 246 + ++L+A +++ Q D Sbjct: 219 WKVEGKLDGKALSARLMRRAAQYD 242 >gi|261492454|ref|ZP_05989010.1| putative recombination ATPase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261311913|gb|EEY13060.1| putative recombination ATPase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 445 Score = 42.8 bits (100), Expect = 0.038, Method: Composition-based stats. Identities = 41/203 (20%), Positives = 69/203 (33%), Gaps = 35/203 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I GP G+GK+ LA I + + R S + + I + ++ T Sbjct: 52 MIFWGPPGTGKTTLAEIIAHHLDAEVERISAVTSGVKEIREAIEQA----KLNRQAGRRT 107 Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N Q D +++ T L SR A + + Sbjct: 108 LLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNA---LLSR---ARIYIL 161 Query: 171 SLPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNL 222 + K++ AD R + ++ + A + + FA ++ M D Sbjct: 162 KPLQAVEILKILQMAIADTERGLGNETLVLEDDVLALLADYVNGDARFALNCLELMVDMA 221 Query: 223 ALSRGMGI-TRSLAAEVLKETQQ 244 S + +SL EVL E Q Sbjct: 222 QDSAKGKVLNKSLLTEVLGERQA 244 >gi|94986459|ref|YP_594392.1| recombination factor protein RarA [Lawsonia intracellularis PHE/MN1-00] gi|94730708|emb|CAJ54070.1| ATPase related to the helicase subunit of the Holliday junction resolvase [Lawsonia intracellularis PHE/MN1-00] Length = 410 Score = 42.8 bits (100), Expect = 0.038, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 57/159 (35%), Gaps = 11/159 (6%) Query: 65 RVVILVGPSGSGKSCLANIWS--DKSRSTRFSNIAKSLDSIL--IDTRKPVLLEDIDLLD 120 ++ GP G GKS LA + + + R S + + + ++L++I Sbjct: 38 PSLLFFGPPGCGKSTLALLLAYKKSTNILRISAPETGIQQLRQKLTDIDILILDEIHRFS 97 Query: 121 FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 F + + ++ T S+ V L SRL V+++ + L++ Sbjct: 98 KAQQDFFLP---LLESGKLTMLATTTENPSFSVT-KQLLSRLN---VLQLRQLGYNELKE 150 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 ++ K I + + ++ L++ + Sbjct: 151 LVKKGTLFLNILLPDDVINFLATTAHGDARTLFNLIEYI 189 >gi|62089026|dbj|BAD92960.1| Werner helicase interacting protein isoform 1 variant [Homo sapiens] Length = 646 Score = 42.8 bits (100), Expect = 0.038, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 16/83 (19%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA+I + S+ + S + + + D+ N+ Sbjct: 243 PSLILWGPPGCGKTTLAHIIASNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 297 Query: 125 QLF-----------HIINSIHQY 136 F H N Q Sbjct: 298 SFFKRKTILFIDEIHRFNKSQQD 320 >gi|294877998|ref|XP_002768232.1| 26S protease regulatory subunit 6A, putative [Perkinsus marinus ATCC 50983] gi|239870429|gb|EER00950.1| 26S protease regulatory subunit 6A, putative [Perkinsus marinus ATCC 50983] Length = 457 Score = 42.8 bits (100), Expect = 0.039, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 67/185 (36%), Gaps = 40/185 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + ++L GP G+GK+ +A + + +T L + I ++ Sbjct: 235 PPKGLLLYGPPGTGKTMMARSCAAATNATFLKLAGPQLVQMFIGDGSKMVRDAFNLAKEK 294 Query: 113 ------LEDIDLLDFN-------------DTQLFHIINSIH---QYDSSLLMTARTFPVS 150 ++++D + + ++N + D ++ A Sbjct: 295 APAIIFIDELDAIGMKRSAGGELSGVREVQRTMLELLNQLDGFSSDDRVKVIAATNRADM 354 Query: 151 WGVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY-IVQRMERS 208 L L S RL V++ LP++D ++++ R++ ++K+ + + R Sbjct: 355 LDPAL--LRSGRLD--RKVELPLPNEDARKRILQ--IHSRKMNVNKEDVNFDELARCTDD 408 Query: 209 LVFAE 213 A+ Sbjct: 409 FNGAQ 413 >gi|269837537|ref|YP_003319765.1| AFG1-family ATPase [Sphaerobacter thermophilus DSM 20745] gi|269786800|gb|ACZ38943.1| AFG1-family ATPase [Sphaerobacter thermophilus DSM 20745] Length = 329 Score = 42.8 bits (100), Expect = 0.039, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 50/148 (33%), Gaps = 29/148 (19%) Query: 30 FSFPRCLGISRDDLLVHSA-------IEQAVRLID----------SWPSWPSRVVILVGP 72 F P S DD A + + ++D P R + L GP Sbjct: 21 FRLPARFAASLDDYRPDPAYPGQAEALTRVRAMLDPEPPRRRLFRRAPDSTPRGLYLDGP 80 Query: 73 SGSGKSCLANIWSDKSRSTRFSNIAKSLDSI-----------LIDTRKPVLLEDIDLLDF 121 G GK+ L + + R L + L+ ++ V +++IDL D Sbjct: 81 PGVGKTHLMAAAFNSASEPRLFVTFDELSAAAGTLGMSGLSRLLANQRLVCIDEIDLRDP 140 Query: 122 NDTQLF-HIINSIHQYDSSLLMTARTFP 148 + L ++ ++ ++ TA P Sbjct: 141 ANIMLLVSLLRAMLAGSPRIIATANADP 168 >gi|218133225|ref|ZP_03462029.1| hypothetical protein BACPEC_01089 [Bacteroides pectinophilus ATCC 43243] gi|217992098|gb|EEC58102.1| hypothetical protein BACPEC_01089 [Bacteroides pectinophilus ATCC 43243] Length = 447 Score = 42.8 bits (100), Expect = 0.039, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 58/155 (37%), Gaps = 24/155 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +I GP G+GK+ LA + ++ + + A ++ ++I + T L Sbjct: 59 IIFYGPPGTGKTTLAKVIANTTSADFCQINATVAGKKDMEDVVAKAKDNI-GMYGRKTIL 117 Query: 127 F----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N + + +L+ A T + V L SR + V ++ + Sbjct: 118 FVDEIHRFNKGQQDYLLPFVEDGTIILIGATTENPYFEVNQA-LISR---SAVFELRPLE 173 Query: 175 DDFLEKVIVKMFAD-------RQIFIDKKLAAYIV 202 D + K+I + +D ID + ++ Sbjct: 174 KDDILKLIKRAISDDKKGMGAYGALIDDDASEFLA 208 >gi|58426759|gb|AAW75796.1| ATPase [Xanthomonas oryzae pv. oryzae KACC10331] Length = 517 Score = 42.8 bits (100), Expect = 0.039, Method: Composition-based stats. Identities = 39/200 (19%), Positives = 67/200 (33%), Gaps = 31/200 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125 +IL GP G GK+ LA + + + + F+ I+ L + + VL E Sbjct: 121 MILWGPPGCGKTTLALLLAHYADAE-FNAISAVLSG--LPEVRQVLAEAAQRFAGGRRTV 177 Query: 126 LF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKIS 171 LF H N Q ++L T L SR + + +S Sbjct: 178 LFVDEVHRFNKAQQDAFLPHIERGTILFVGATTENPSFELNSA---LLSRCRVHVLEGVS 234 Query: 172 LPD--DDFLEKVIVKMFADRQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 D + + A+R + + + I + + A L++ LA Sbjct: 235 PQDIVEALQRAL---HDAERGLGQQTIQVSEASLLEIASAADGDVRRALTLLEIAAELAT 291 Query: 225 SRGMGITRSLAAEVLKETQQ 244 G IT +VL + + Sbjct: 292 GEGGEITPRTLLQVLADRTR 311 >gi|157879038|ref|XP_001687348.1| serine peptidase, Clan SJ, family S16 [Leishmania major strain Friedlin] gi|321438263|emb|CBZ12016.1| putative 26S protease regulatory subunit [Leishmania major strain Friedlin] Length = 396 Score = 42.8 bits (100), Expect = 0.039, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + + +A S+ I V+ E Sbjct: 173 PPKGVLLYGPPGTGKTLLAKAIAANVDAAFLKIVASSIVDKYIGESARVIRE 224 >gi|229581607|ref|YP_002840006.1| proteasome-activating nucleotidase [Sulfolobus islandicus Y.N.15.51] gi|259535109|sp|C3NFW6|PAN_SULIN RecName: Full=Proteasome-activating nucleotidase; Short=PAN; AltName: Full=Proteasomal ATPase; AltName: Full=Proteasome regulatory ATPase; AltName: Full=Proteasome regulatory particle gi|228012323|gb|ACP48084.1| 26S proteasome subunit P45 family [Sulfolobus islandicus Y.N.15.51] Length = 393 Score = 42.8 bits (100), Expect = 0.039, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + +S + +A + ++ E Sbjct: 167 PPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRE 218 >gi|308271855|emb|CBX28463.1| Holliday junction ATP-dependent DNA helicase ruvB [uncultured Desulfobacterium sp.] Length = 352 Score = 42.8 bits (100), Expect = 0.039, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 30/62 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P V+L GP G GK+ LA+I ++++ + +L+ LE+ D+L + Sbjct: 70 PIDHVLLHGPPGLGKTTLAHIIANETGANLTVTSGPALEKGGDLVGILTHLEEGDILFID 129 Query: 123 DT 124 + Sbjct: 130 EI 131 >gi|254558147|ref|YP_003065672.1| transposase of ISMdi27, IS21 family (ORF 2) [Methylobacterium extorquens DM4] gi|254265690|emb|CAX17034.1| transposase of ISMdi27, IS21 family (ORF 2) [Methylobacterium extorquens DM4] Length = 244 Score = 42.8 bits (100), Expect = 0.039, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 49/110 (44%), Gaps = 22/110 (20%) Query: 64 SRVVILVGPSGSGKSCLANIWS-------DKSRSTRFSNIAKSLDSILIDTRKPVLLED- 115 R V+LVG +G+GK+ LA + ++R ++ L++ R+ + + Sbjct: 99 QRNVVLVGGTGTGKTHLAIAMARACIRDGARARFYNVVDLVNRLEAEARAGRQGRIADHL 158 Query: 116 --IDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 +DL+ ++ LFH+I+ +++ +S+++T W Sbjct: 159 ARLDLVVLDELGYLPFAQSGGQLLFHLISKLYET-TSIVVTTNLAFGEWP 207 >gi|254518552|ref|ZP_05130608.1| holliday junction DNA helicase RuvB [Clostridium sp. 7_2_43FAA] gi|226912301|gb|EEH97502.1| holliday junction DNA helicase RuvB [Clostridium sp. 7_2_43FAA] Length = 341 Score = 42.8 bits (100), Expect = 0.039, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 3/70 (4%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G GK+ LANI + + +++ L+D D+L ++ Sbjct: 54 VLLYGPPGLGKTTLANIIAKEMDGELKITSGPAIERAGDLAAILTTLKDNDVLFIDEI-- 111 Query: 127 FHIINSIHQY 136 H +N + Sbjct: 112 -HRLNRNVEE 120 >gi|210622016|ref|ZP_03292959.1| hypothetical protein CLOHIR_00905 [Clostridium hiranonis DSM 13275] gi|210154461|gb|EEA85467.1| hypothetical protein CLOHIR_00905 [Clostridium hiranonis DSM 13275] Length = 351 Score = 42.8 bits (100), Expect = 0.039, Method: Composition-based stats. Identities = 40/203 (19%), Positives = 72/203 (35%), Gaps = 37/203 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G GK+ LA I +++ +++ LE+ D+L ++ Sbjct: 74 VLLYGPPGLGKTTLAGIIANEMGVNLRITSGPAIEKAGDLAAILTNLEENDVLFIDEI-- 131 Query: 127 FHIINSIHQY----------------------------DSSLLMTARTFPVSWGVCLPDL 158 H IN + L+ A T P L D Sbjct: 132 -HRINRSVEEVLYPAMEDFCLDIIIGKGPSARSIRLDLPKFTLIGATTRPGMLTNPLRD- 189 Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218 + + K+ +D L +++ + ID K AA I +R + A +L+ + Sbjct: 190 ----RFGVICKLDYYTNDELAQIVKRSSGLLGAGIDDKSAAEIARRSRGTPRIANRLLKR 245 Query: 219 M-DNLALSRGMGITRSLAAEVLK 240 + D + IT +A + L+ Sbjct: 246 VRDYAQVRANGDITEDVAKDALE 268 >gi|56459774|ref|YP_155055.1| recombination factor protein RarA [Idiomarina loihiensis L2TR] gi|56178784|gb|AAV81506.1| Uncharacterized ATPase related to the helicase subunit of the Holliday junction resolvase [Idiomarina loihiensis L2TR] Length = 446 Score = 42.8 bits (100), Expect = 0.039, Method: Composition-based stats. Identities = 39/178 (21%), Positives = 72/178 (40%), Gaps = 31/178 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G+GK+ LA + + ++ +T R S + + I + LL T Sbjct: 52 MILWGPPGTGKTTLAELIATQANATVSRISAVTSGVKDIRKAIEEAKLL---AQQQGRRT 108 Query: 125 QLF----HIINSIHQ-------YDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISL 172 LF H N Q D +++ T G L + L SR A V ++ Sbjct: 109 ILFVDEVHRFNKSQQDAFLPHIEDGTIVFIGATTENP-GFELNNALLSR---ARVYRLQT 164 Query: 173 PDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 LE+ + D RQ+ ++ + A ++ + + A +L++ ++ +A Sbjct: 165 LSKTDLEQALESALTDAERGLGQRQLQLEGEARAKLL---DLAGGDARRLLNYLEVVA 219 >gi|17532375|ref|NP_495705.1| Cell Division Cycle related family member (cdc-48.2) [Caenorhabditis elegans] gi|6226902|sp|P54812|TERA2_CAEEL RecName: Full=Transitional endoplasmic reticulum ATPase homolog 2; AltName: Full=Cell division cycle-related protein 48.2; AltName: Full=p97/CDC48 homolog 2 gi|3874892|emb|CAA88105.1| C. elegans protein C41C4.8, confirmed by transcript evidence [Caenorhabditis elegans] gi|3875715|emb|CAA88314.1| C. elegans protein C41C4.8, confirmed by transcript evidence [Caenorhabditis elegans] Length = 810 Score = 42.8 bits (100), Expect = 0.039, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 47/121 (38%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + Sbjct: 242 PPRGILLFGPPGTGKTLIARAVANETGAFFFLINGPEIMSKMSGESESNLRKAFAECEKN 301 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + +++ A P S Sbjct: 302 SPAILFIDEIDAIAPKREKAHGEVEKRIVSQLLTLMDGLKTRAHVVVIAATNRPNSIDGA 361 Query: 155 L 155 L Sbjct: 362 L 362 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 515 PSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKA 571 >gi|332031295|gb|EGI70823.1| 26S protease regulatory subunit 4 [Acromyrmex echinatior] Length = 439 Score = 42.8 bits (100), Expect = 0.040, Method: Composition-based stats. Identities = 31/206 (15%), Positives = 69/206 (33%), Gaps = 45/206 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + VIL GP G+GK+ LA ++++ +T + L + ++ Sbjct: 217 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEH 276 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTART---- 146 +++ID + + ++N + + D ++M Sbjct: 277 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVVMATNRIETL 336 Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206 P D ++ LPD+ ++ + + D LA I+ + + Sbjct: 337 DPALIRPGRIDRK--------IEFPLPDEKTKRRIFNIHTSRMTLAPDVNLAELIMAKDD 388 Query: 207 RSLVFAEKLVDKMDNLALSRGM-GIT 231 S + + + +AL +T Sbjct: 389 LSGADIKAICTEAGLMALRERRMKVT 414 >gi|281202026|gb|EFA76231.1| 26S proteasome ATPase 3 subunit [Polysphondylium pallidum PN500] Length = 427 Score = 42.8 bits (100), Expect = 0.040, Method: Composition-based stats. Identities = 24/167 (14%), Positives = 58/167 (34%), Gaps = 38/167 (22%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++ ST L + I ++ Sbjct: 207 PPKGVLMYGPPGTGKTLLARACAAQTNSTYLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 266 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151 ++++D + + ++N + + ++ A Sbjct: 267 GPTIIFIDELDAIGTKRFDSELSGDREVQRTMLELLNQLDGFSSDANIKVIAATNRIDIL 326 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L L S RL ++ LP+++ ++ R++ + + Sbjct: 327 DPAL--LRSGRLD--RKIEFPLPNEEARSHIL--RIHSRKMNVSPDV 367 >gi|46580096|ref|YP_010904.1| recombination factor protein RarA [Desulfovibrio vulgaris str. Hildenborough] gi|120602446|ref|YP_966846.1| recombination factor protein RarA [Desulfovibrio vulgaris DP4] gi|46449512|gb|AAS96163.1| ATPase, AAA family [Desulfovibrio vulgaris str. Hildenborough] gi|120562675|gb|ABM28419.1| Recombination protein MgsA [Desulfovibrio vulgaris DP4] gi|311233905|gb|ADP86759.1| AAA ATPase central domain protein [Desulfovibrio vulgaris RCH1] Length = 411 Score = 42.8 bits (100), Expect = 0.040, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 64/163 (39%), Gaps = 14/163 (8%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSIL--IDTRKPVLLEDIDLLD 120 ++L GP G GKS LA + + + R S L + + ++L+++ Sbjct: 39 PSLLLFGPPGCGKSTLALLLAKARSANVLRLSAPEAGLQHLRKQLHGVDILVLDELHRFS 98 Query: 121 FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 F + + D ++L T P + V L SRL V+++ L + Sbjct: 99 KAQQDFF--LPLLESGDITMLATTTENPS-FSVTRQ-LLSRL---HVLRLRPLGRAELLE 151 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + + +++ I+ + + S A +++ ++ +A Sbjct: 152 LGRRGAVAQEVQIEDDVLDLLA---SMSHGDARTMLNLLEYVA 191 >gi|18426902|ref|NP_064520.2| ATPase WRNIP1 isoform 1 [Homo sapiens] gi|73622085|sp|Q96S55|WRIP1_HUMAN RecName: Full=ATPase WRNIP1; AltName: Full=Werner helicase-interacting protein 1 gi|55661735|emb|CAH73664.1| Werner helicase interacting protein 1 [Homo sapiens] gi|119575489|gb|EAW55085.1| Werner helicase interacting protein 1, isoform CRA_a [Homo sapiens] Length = 665 Score = 42.8 bits (100), Expect = 0.040, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 16/83 (19%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA+I + S+ + S + + + D+ N+ Sbjct: 262 PSLILWGPPGCGKTTLAHIIASNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 316 Query: 125 QLF-----------HIINSIHQY 136 F H N Q Sbjct: 317 SFFKRKTILFIDEIHRFNKSQQD 339 >gi|147669758|ref|YP_001214576.1| recombination factor protein RarA [Dehalococcoides sp. BAV1] gi|146270706|gb|ABQ17698.1| AAA ATPase, central domain protein [Dehalococcoides sp. BAV1] Length = 457 Score = 42.8 bits (100), Expect = 0.040, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 51/137 (37%), Gaps = 21/137 (15%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF--N 122 +I GP GSGK+ LANI + + A S S + + V+ E + L Sbjct: 58 PSLIFWGPPGSGKTTLANIIAHSLDAHF---SALSAVSAGVADLRRVVEEARERLKLYHR 114 Query: 123 DTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 T LF H N + + +L+ A T S+ V L SR V + Sbjct: 115 RTILFIDEIHRFNKSQQDAILPYVEDGTVVLIGATTENPSFEVNSA-LLSR---VQVYVL 170 Query: 171 SLPDDDFLEKVIVKMFA 187 + + L ++ + Sbjct: 171 NSLSEKELSVILKRSLE 187 >gi|330900604|gb|EGH32023.1| recombination factor protein RarA [Pseudomonas syringae pv. japonica str. M301072PT] Length = 440 Score = 42.8 bits (100), Expect = 0.040, Method: Composition-based stats. Identities = 38/210 (18%), Positives = 74/210 (35%), Gaps = 32/210 (15%) Query: 57 DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 ++ +I GP G GK+ LA + + S + + A I V + Sbjct: 40 EALEQGALHSMIFWGPPGVGKTTLARLLAKVSDAHFETVSAVLAGVKEIRQAVEVARQQA 99 Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162 T LF H N Q D +L+ T L SR Sbjct: 100 GQYGKR-TILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154 Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLV 216 A V + D+ L K++ + + RQ+ + + A ++ + +++ Sbjct: 155 --ARVYVLKSLDEAALRKLVNRALTEERGLGKRQLALSDEGFAMLMSAAD---GDGRRML 209 Query: 217 DKMDNLA-LSR-GMGITRSLAAEVLKETQQ 244 + ++N + L+ G I L +L ++++ Sbjct: 210 NLLENASDLAEDGSEIDVGLLQSLLGDSRR 239 >gi|320101978|ref|YP_004177569.1| AAA family ATPase, CDC48 subfamily [Isosphaera pallida ATCC 43644] gi|319749260|gb|ADV61020.1| AAA family ATPase, CDC48 subfamily [Isosphaera pallida ATCC 43644] Length = 845 Score = 42.8 bits (100), Expect = 0.040, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P + V+L GP G GK+ +A + +S + F+ + D Sbjct: 339 PPQGVLLHGPPGCGKTLIARAVAAESDAAFFAVNGPEIVHKFYGESEAHLRRIFDEAARS 398 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + L++ID + QL +++ +++ L++ A P + Sbjct: 399 APSIIFLDEIDAIAPKRENAVGEVEKRIVAQLLALMDGMNRRGRVLVLAATNLPNNLDPA 458 Query: 155 L 155 L Sbjct: 459 L 459 Score = 37.8 bits (87), Expect = 1.4, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P R ++L GP G GK+ +A + +S++ +L S + + + E Sbjct: 612 PPRGILLHGPPGCGKTLIAKAIARESQANFIPVKGPALLSKYVGDSEKAVRE 663 >gi|289705553|ref|ZP_06501945.1| ATPase, AFG1 family [Micrococcus luteus SK58] gi|289557782|gb|EFD51081.1| ATPase, AFG1 family [Micrococcus luteus SK58] Length = 351 Score = 42.8 bits (100), Expect = 0.040, Method: Composition-based stats. Identities = 41/203 (20%), Positives = 64/203 (31%), Gaps = 43/203 (21%) Query: 67 VILVGPSGSGKSC-LANIWSDKSR----------STRFSNIAKSLDSILIDTRKPVLLED 115 + L G G GK+ LA+ W + ++ + V +++ Sbjct: 86 IYLDGGFGVGKTHLLASTWHAAPGPKAFGTFVEYTNLVGALSFRKAVDQLKEYTLVCIDE 145 Query: 116 IDLLDFNDTQLFH-IINSIHQYDSSLLMTARTFPVSWG---------------------- 152 +L D DT L ++ + L+ T+ T P S G Sbjct: 146 FELDDPGDTVLMSRLMRELADAGVRLVATSNTLPGSLGEGRFAAQDFKREIQVLADQFEV 205 Query: 153 --VCLPDLCSR-LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209 V D R L AA DD +E + F D + A + + R Sbjct: 206 IRVDGEDYRHRGLSAAPS----PLDDAAVEATAQENFPDAGVLAVDDFAD-LTAMLSRVH 260 Query: 210 VF-AEKLVDKMDNLALSRGMGIT 231 +LV +D LAL IT Sbjct: 261 PSRYRELVKDVDVLALHDVHTIT 283 >gi|259089391|ref|NP_001158521.1| Transitional endoplasmic reticulum ATPase [Oncorhynchus mykiss] gi|225703688|gb|ACO07690.1| Transitional endoplasmic reticulum ATPase [Oncorhynchus mykiss] Length = 323 Score = 42.8 bits (100), Expect = 0.040, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 39/85 (45%), Gaps = 16/85 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 296 Query: 107 TRKPVLLEDIDLLDFNDTQLFHIIN 131 + + ++++D + +++ N Sbjct: 297 SPAIIFIDELDAIAPKREKVWGREN 321 >gi|189466213|ref|ZP_03014998.1| hypothetical protein BACINT_02583 [Bacteroides intestinalis DSM 17393] gi|189434477|gb|EDV03462.1| hypothetical protein BACINT_02583 [Bacteroides intestinalis DSM 17393] Length = 424 Score = 42.8 bits (100), Expect = 0.040, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 66/175 (37%), Gaps = 34/175 (19%) Query: 67 VILVGPSGSGKSCLANIWSDK--SRSTRFSNIAKSLDSI-----------LIDTRKPVL- 112 IL GP G GK+ LA I ++K + S + + + P+L Sbjct: 41 FILWGPPGVGKTTLAQIIANKLETPFYTLSAVTSGVKDVREVIERAKSNRFFSQGSPILF 100 Query: 113 LEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++I + L + + L+ A T S+ V P L SR + + Sbjct: 101 IDEIHRFSKSQQDSLL----GAVEQGTVTLIGATTENPSFEVIRP-LLSR---CQLYVLK 152 Query: 172 LPDDDFLEKVIVKM------FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 + + L +++ + +R+I + + A + S A KL++ +D Sbjct: 153 SLEKEDLMELLQRAVTTDHILKERKIELKETTAM-----LRYSGGDARKLLNILD 202 >gi|118780835|ref|XP_310465.2| AGAP000616-PA [Anopheles gambiae str. PEST] gi|116130339|gb|EAA06390.2| AGAP000616-PA [Anopheles gambiae str. PEST] Length = 407 Score = 42.8 bits (100), Expect = 0.040, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + +++ST L + I ++ + Sbjct: 187 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRD 238 >gi|296197533|ref|XP_002746324.1| PREDICTED: ATPase WRNIP1-like isoform 3 [Callithrix jacchus] Length = 620 Score = 42.8 bits (100), Expect = 0.040, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 16/83 (19%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA+I ++ S+ + S + + + D+ N+ Sbjct: 263 PSLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 317 Query: 125 QLF-----------HIINSIHQY 136 F H N Q Sbjct: 318 SFFKRKTILFIDEIHRFNKSQQD 340 >gi|294782592|ref|ZP_06747918.1| holliday junction DNA helicase RuvB [Fusobacterium sp. 1_1_41FAA] gi|294481233|gb|EFG29008.1| holliday junction DNA helicase RuvB [Fusobacterium sp. 1_1_41FAA] Length = 338 Score = 42.8 bits (100), Expect = 0.040, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 64/183 (34%), Gaps = 41/183 (22%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G GK+ LA + +++ ++ L+ LE+ D+L ++ Sbjct: 55 ILLYGPPGLGKTTLAGVIANEMQANLKITSGPILEKAGDLAAILTSLEENDILFIDEI-- 112 Query: 127 FHIINS--------IHQYDSSLLMTARTFPV-SWGVCLP-----------DLCS---RLK 163 H +N+ + ++ + S + LP L S R + Sbjct: 113 -HRLNNTVEEILYPAMEDGELDIIIGKGPSAKSIRIELPPFTLIGATTRAGLLSAPLRDR 171 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKK--------------LAAYIVQRMERSL 209 K+ + D + +I++ + I ++ +A +++R+ R Sbjct: 172 FGVSHKMEYYNIDEIRAIIIRGAKILGVKISEEGAIEISKRSRGTPRIANRLLKRV-RDY 230 Query: 210 VFA 212 Sbjct: 231 CEI 233 >gi|270668822|ref|ZP_06222556.1| chromosomal replication initiator protein DnaA [Haemophilus influenzae HK1212] gi|270316646|gb|EFA28449.1| chromosomal replication initiator protein DnaA [Haemophilus influenzae HK1212] Length = 148 Score = 42.8 bits (100), Expect = 0.040, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 9/63 (14%) Query: 40 RDDLLVHSAIEQAVRL---IDSWPSWPS-RVVILVGPSGSGKSCLAN-----IWSDKSRS 90 D+ + + + A + + P PS L G +G GK+ L + I +DK + Sbjct: 62 FDNFVEGKSNQLARAVGQKLAQAPGEPSANPFFLYGGTGLGKTHLLHAIGNGILADKPNA 121 Query: 91 TRF 93 Sbjct: 122 RVL 124 >gi|258517288|ref|YP_003193510.1| IstB domain-containing protein ATP-binding protein [Desulfotomaculum acetoxidans DSM 771] gi|257780993|gb|ACV64887.1| IstB domain protein ATP-binding protein [Desulfotomaculum acetoxidans DSM 771] Length = 261 Score = 42.8 bits (100), Expect = 0.040, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 30/139 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 + +VGP+G+GK+ LA + T ++ + L+DT +P Sbjct: 117 LYIVGPTGTGKTHLAYAIISQLIQTHMVSVVSCIVPELMDTLRPQNNRNEAEERFRLIKN 176 Query: 111 ---VLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGV-CLPDL----- 158 VLL+D+ ++ +L IIN+ + ++T+ V +L Sbjct: 177 TELVLLDDLGAEKESEWVVERLLVIINARYSNMVPTIITSNIPLDLLSVDKDRNLILDWQ 236 Query: 159 --CSRLKAATVVKISLPDD 175 SR++ + + DD Sbjct: 237 RIVSRIREMCHLVLVDGDD 255 >gi|238917273|ref|YP_002930790.1| putative ATPase [Eubacterium eligens ATCC 27750] gi|238872633|gb|ACR72343.1| putative ATPase [Eubacterium eligens ATCC 27750] Length = 455 Score = 42.8 bits (100), Expect = 0.040, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 57/155 (36%), Gaps = 24/155 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 VI GP G+GK+ LA I ++ + + A ++ +++ + T L Sbjct: 70 VIFYGPPGTGKTTLARIIANTTSAEFCQVNATVAGKKDMEEVVAKAKDNL-GMYGRKTIL 128 Query: 127 F----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N + + +L+ A T + V L SR + + ++ + Sbjct: 129 FVDEIHRFNKGQQDYLLPFVEDGTIILIGATTENPYFEVNGA-LISR---SIIFELKPLE 184 Query: 175 DDFLEKVIVKMFAD-------RQIFIDKKLAAYIV 202 D ++ +I + D + ID ++ Sbjct: 185 KDDIKTIIKRAVYDEKKGMGSYKAVIDDDALEFLA 219 >gi|146095326|ref|XP_001467545.1| 26S protease regulatory subunit [Leishmania infantum JPCM5] gi|321398878|emb|CBZ08327.1| putative 26S protease regulatory subunit [Leishmania infantum JPCM5] gi|322496221|emb|CBZ31293.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 396 Score = 42.8 bits (100), Expect = 0.040, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + + +A S+ I V+ E Sbjct: 173 PPKGVLLYGPPGTGKTLLAKAIAANVDAAFLKIVASSIVDKYIGESARVIRE 224 >gi|32477050|ref|NP_870044.1| chromosomal replication initiator protein dnaA [Rhodopirellula baltica SH 1] gi|32447598|emb|CAD79197.1| chromosomal replication initiator protein dnaA [Rhodopirellula baltica SH 1] Length = 420 Score = 42.8 bits (100), Expect = 0.040, Method: Composition-based stats. Identities = 31/205 (15%), Positives = 64/205 (31%), Gaps = 51/205 (24%) Query: 64 SRVVILVGPSGSGKS----CLA------NIWSD--------------------------- 86 SR ++LVG G+GK+ L+ N+W Sbjct: 95 SRPMLLVGQPGTGKTALALHLSKRMSISNVWEAMEMDKDTAQGGPSGVTSRVLSSRVLYQ 154 Query: 87 ------KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD---FNDTQLFHIINSIHQYD 137 + ++ + +DT ++L+D+ L+ +L + + Sbjct: 155 PAIDFAREFASSIDSKDMPRFREKLDTVPILVLDDLHLIADKGPAQEELAQRLEARDAEG 214 Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 ++T R P P L SR V + P D ++ ++ ++ + Sbjct: 215 RLTIVTCRRLPSEVRGLRPALVSRTLPGLTVTLHPPAGDTRRTILRELMLAHLPDVEPEA 274 Query: 198 AAYIVQRME-----RSLVFAEKLVD 217 + + + R+ A K V Sbjct: 275 LSLLDAGLPAESTVRAFESAIKQVA 299 >gi|15669365|ref|NP_248170.1| proteasome-activating nucleotidase [Methanocaldococcus jannaschii DSM 2661] gi|2492524|sp|Q58576|PAN_METJA RecName: Full=Proteasome-activating nucleotidase; Short=PAN; AltName: Full=Proteasomal ATPase; AltName: Full=Proteasome regulatory ATPase; AltName: Full=Proteasome regulatory particle gi|1591803|gb|AAB99179.1| proteasome regulatory AAA-ATPase [Methanocaldococcus jannaschii DSM 2661] Length = 430 Score = 42.8 bits (100), Expect = 0.040, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + ++L GP G+GK+ LA + ++ +T + L I ++ + Sbjct: 203 PPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKD 254 >gi|316973947|gb|EFV57489.1| putative midasin [Trichinella spiralis] Length = 4042 Score = 42.8 bits (100), Expect = 0.041, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 6/81 (7%) Query: 64 SRVVILVGPSGSGKSCLANIWSD---KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120 +V+++ GP G GKS L ++ + R +++ +D K +LLED+D Sbjct: 123 EKVLVVYGPGGCGKSWLLRSFAHSVKRCRDLVVLQLSEHMDVKAAKMGKWLLLEDVDCSP 182 Query: 121 FNDTQLFHIINSIHQYDSSLL 141 +L H + ++ + L+ Sbjct: 183 V---ELLHQLGAMIENRQLLV 200 >gi|193632027|ref|XP_001948697.1| PREDICTED: 26S protease regulatory subunit 6A-like [Acyrthosiphon pisum] Length = 431 Score = 42.8 bits (100), Expect = 0.041, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + +++ST L + I ++ + Sbjct: 212 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRD 263 >gi|119872197|ref|YP_930204.1| AAA family ATPase, CDC48 subfamily protein [Pyrobaculum islandicum DSM 4184] gi|119673605|gb|ABL87861.1| AAA family ATPase, CDC48 subfamily [Pyrobaculum islandicum DSM 4184] Length = 731 Score = 42.8 bits (100), Expect = 0.041, Method: Composition-based stats. Identities = 29/208 (13%), Positives = 70/208 (33%), Gaps = 47/208 (22%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTR-- 108 P + ++L+GP G+GK+ LA ++++ + + L I + + Sbjct: 212 PPKGILLIGPPGTGKTLLAKAVANEANAYFVAINGPEIMSKYYGESEARLREIFEEAKKN 271 Query: 109 --KPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + + +++ A P + Sbjct: 272 APAIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLQERGQVIVIGATNRPDAIDPA 331 Query: 155 LP-----DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209 L D R I+ PD +++ + R + + + + M Sbjct: 332 LRRPGRFD---REIW-----INPPDFKGRYEIL--LIHTRNMPLAPDVDLRKLAEMTHGF 381 Query: 210 VFAEKLVDKMDNLAL--SRGMGITRSLA 235 A+ + + A + I L Sbjct: 382 SGAD--LAALAREAAMSALRRAIQSGLI 407 Score = 36.7 bits (84), Expect = 3.2, Method: Composition-based stats. Identities = 9/28 (32%), Positives = 17/28 (60%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS 94 ++L GP G+GK+ LA + +S + + Sbjct: 491 ILLFGPPGTGKTLLAKAVATESGANFIA 518 >gi|27229310|ref|NP_758835.1| ATPase WRNIP1 [Rattus norvegicus] gi|73920471|sp|Q8CG07|WRIP1_RAT RecName: Full=ATPase WRNIP1; AltName: Full=Werner helicase-interacting protein 1 gi|25989624|gb|AAN15750.1| Werner syndrome-interacting protein-like protein [Rattus norvegicus] gi|68534260|gb|AAH98652.1| Werner helicase interacting protein 1 [Rattus norvegicus] gi|149045258|gb|EDL98344.1| Werner helicase interacting protein 1, isoform CRA_b [Rattus norvegicus] Length = 660 Score = 42.8 bits (100), Expect = 0.041, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 52/148 (35%), Gaps = 28/148 (18%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA+I ++ S+ + S + + + D+ N+ Sbjct: 257 PSLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 311 Query: 125 QLF-----------HIINSIHQY--------DSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 F H N Q + L+ A T S+ V L SR Sbjct: 312 SFFKRKTILFIDEIHRFNKSQQDTFLPHVECGTITLIGATTENPSFQVNTA-LLSR---C 367 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFI 193 V+ + + + ++++ I + Sbjct: 368 RVIVLEKLPVEAMVTILMRAINSLGIHV 395 >gi|323475184|gb|ADX85790.1| 26S proteasome subunit P45 family [Sulfolobus islandicus REY15A] Length = 393 Score = 42.8 bits (100), Expect = 0.041, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + +S + +A + ++ E Sbjct: 167 PPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRE 218 >gi|319790480|ref|YP_004152113.1| Holliday junction DNA helicase RuvB [Thermovibrio ammonificans HB-1] gi|317114982|gb|ADU97472.1| Holliday junction DNA helicase RuvB [Thermovibrio ammonificans HB-1] Length = 320 Score = 42.8 bits (100), Expect = 0.041, Method: Composition-based stats. Identities = 24/159 (15%), Positives = 55/159 (34%), Gaps = 21/159 (13%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSR-------STRFSNIAKSLDSILIDTRKPVL-LE 114 P ++L GP G+GK+ LA I + + R + L + +L ++ Sbjct: 34 PLDHILLYGPPGTGKTTLATILASELRVGLKLLSAPTVERKGDLLGVLTTLNEGDILFID 93 Query: 115 DIDLLDFN-DTQLFHIINSIHQY---DSSLLMTARTFP-------VSWGVCLPDLCSRLK 163 +I L + + L+ + ++ P + P L SR Sbjct: 94 EIHRLPRSIEEMLYTAMEDFRVDVIVGGKRAVSFELPPFTLVGATTRLNLITPPLRSRFG 153 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 +++ P + L++V + ++ + + + Sbjct: 154 IVCRLELYSPRE--LKEVARRGAEKLKLNLTEGALELLA 190 >gi|317507132|ref|ZP_07964892.1| ATPase [Segniliparus rugosus ATCC BAA-974] gi|316254578|gb|EFV13888.1| ATPase [Segniliparus rugosus ATCC BAA-974] Length = 449 Score = 42.8 bits (100), Expect = 0.041, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 62/156 (39%), Gaps = 27/156 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLD-------------SILIDTRKPVLL 113 V+L GP G+GK+ +A++ S + + A + + R + + Sbjct: 48 VVLHGPPGTGKTTIASLLSSATGREFVALSALTAGVKEVREVIEDARMRLAAGVRTVLFI 107 Query: 114 EDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +++ L + ++ LL+ A T + V P L SR + V+++ Sbjct: 108 DEVHRFSKTQQDALL----AAVEHQIVLLVAATTENPGFAVVSP-LLSR---SLVLELRP 159 Query: 173 PDDDFLEKVIVKMFAD-RQ----IFIDKKLAAYIVQ 203 + L+ +I + AD R + + + ++++ Sbjct: 160 LAREDLDALISRALADERGYGGSVALSDEAREHLLR 195 >gi|312086086|ref|XP_003144939.1| ATPase [Loa loa] gi|307759896|gb|EFO19130.1| ATPase [Loa loa] Length = 737 Score = 42.8 bits (100), Expect = 0.041, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 68/196 (34%), Gaps = 34/196 (17%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSR------------STRFSNIAKSLDSILIDTR-- 108 P ++L GP G K+ +A + +SR S +++ + R Sbjct: 505 PPSGILLYGPPGCSKTLIARAIASQSRMNFLAVKGPELFSKWVGESERAVRELFRRARQV 564 Query: 109 KPVLL--EDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 P ++ ++ID + N TQL ++ + + +++ A P Sbjct: 565 APAIIFFDEIDAVGANRGDRNESHVGERVLTQLLTELDGLEEKGDVMVLAATNRPDRLDS 624 Query: 154 CLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 L L R + + LPD++ +++ ++ +D + + S Sbjct: 625 AL--LRPGRFN--LTIHVPLPDEETRLEILRIRLNHMKVNVDLDVEDIGKRTKGFSGAEV 680 Query: 213 EKLVDKMDNLALSRGM 228 +L D+ AL Sbjct: 681 VELCDQAVREALLENR 696 >gi|260941976|ref|XP_002615154.1| hypothetical protein CLUG_05169 [Clavispora lusitaniae ATCC 42720] gi|238851577|gb|EEQ41041.1| hypothetical protein CLUG_05169 [Clavispora lusitaniae ATCC 42720] Length = 431 Score = 42.8 bits (100), Expect = 0.041, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 61/150 (40%), Gaps = 34/150 (22%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P+ ++L GP G+GKS LA + ++ ST FS + L S + + ++ Sbjct: 161 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESERLVKQLFTMAREN 220 Query: 113 ------LEDIDLLDFND------------TQLFHIINSI-HQYDSSLLMTARTFPVSWGV 153 ++++D L T+L +N + + L++ A P W + Sbjct: 221 KPSIIFIDEVDALCGPRGEGESEASRRIKTELLVQMNGVGNDSGGVLVLGATNIP--WQL 278 Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 D R + + I+LPD + +++ Sbjct: 279 ---DAAVRRRFERRIYIALPDIEARKRMFE 305 >gi|227828122|ref|YP_002829902.1| proteasome-activating nucleotidase [Sulfolobus islandicus M.14.25] gi|227830829|ref|YP_002832609.1| proteasome-activating nucleotidase [Sulfolobus islandicus L.S.2.15] gi|229579725|ref|YP_002838124.1| proteasome-activating nucleotidase [Sulfolobus islandicus Y.G.57.14] gi|229585361|ref|YP_002843863.1| proteasome-activating nucleotidase [Sulfolobus islandicus M.16.27] gi|238620322|ref|YP_002915148.1| proteasome-activating nucleotidase [Sulfolobus islandicus M.16.4] gi|284998344|ref|YP_003420112.1| 26S proteasome subunit P45 family [Sulfolobus islandicus L.D.8.5] gi|259535094|sp|C3MZI6|PAN_SULIA RecName: Full=Proteasome-activating nucleotidase; Short=PAN; AltName: Full=Proteasomal ATPase; AltName: Full=Proteasome regulatory ATPase; AltName: Full=Proteasome regulatory particle gi|259535097|sp|C4KIR6|PAN_SULIK RecName: Full=Proteasome-activating nucleotidase; Short=PAN; AltName: Full=Proteasomal ATPase; AltName: Full=Proteasome regulatory ATPase; AltName: Full=Proteasome regulatory particle gi|259535101|sp|C3MRF1|PAN_SULIL RecName: Full=Proteasome-activating nucleotidase; Short=PAN; AltName: Full=Proteasomal ATPase; AltName: Full=Proteasome regulatory ATPase; AltName: Full=Proteasome regulatory particle gi|259535105|sp|C3MY47|PAN_SULIM RecName: Full=Proteasome-activating nucleotidase; Short=PAN; AltName: Full=Proteasomal ATPase; AltName: Full=Proteasome regulatory ATPase; AltName: Full=Proteasome regulatory particle gi|259535113|sp|C3N7K8|PAN_SULIY RecName: Full=Proteasome-activating nucleotidase; Short=PAN; AltName: Full=Proteasomal ATPase; AltName: Full=Proteasome regulatory ATPase; AltName: Full=Proteasome regulatory particle gi|227457277|gb|ACP35964.1| 26S proteasome subunit P45 family [Sulfolobus islandicus L.S.2.15] gi|227459918|gb|ACP38604.1| 26S proteasome subunit P45 family [Sulfolobus islandicus M.14.25] gi|228010440|gb|ACP46202.1| 26S proteasome subunit P45 family [Sulfolobus islandicus Y.G.57.14] gi|228020411|gb|ACP55818.1| 26S proteasome subunit P45 family [Sulfolobus islandicus M.16.27] gi|238381392|gb|ACR42480.1| 26S proteasome subunit P45 family [Sulfolobus islandicus M.16.4] gi|284446240|gb|ADB87742.1| 26S proteasome subunit P45 family [Sulfolobus islandicus L.D.8.5] gi|323477916|gb|ADX83154.1| 26S proteasome subunit P45 family [Sulfolobus islandicus HVE10/4] Length = 393 Score = 42.8 bits (100), Expect = 0.041, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + +S + +A + ++ E Sbjct: 167 PPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRE 218 >gi|218283047|ref|ZP_03489149.1| hypothetical protein EUBIFOR_01735 [Eubacterium biforme DSM 3989] gi|218216241|gb|EEC89779.1| hypothetical protein EUBIFOR_01735 [Eubacterium biforme DSM 3989] Length = 604 Score = 42.8 bits (100), Expect = 0.041, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 45/140 (32%), Gaps = 45/140 (32%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 +LVGP G+GK+ LA + ++ FS + + Sbjct: 190 ALLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEMFVGRGAAKVRDLFKQAREKAPCI 249 Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW---- 151 V +++ID + + ND QL ++ +L+ A P S Sbjct: 250 VFIDEIDTIGKKRDGAGMNGNDEREQTLNQLLAEMDGFDGSKGVVLLAATNRPDSLDPAL 309 Query: 152 ----------GVCLPDLCSR 161 V LPDL R Sbjct: 310 TRPGRFDRRIPVELPDLAGR 329 >gi|161507635|ref|YP_001577589.1| recombination factor protein RarA [Lactobacillus helveticus DPC 4571] gi|160348624|gb|ABX27298.1| putative chromosome segregation helicase [Lactobacillus helveticus DPC 4571] Length = 441 Score = 42.8 bits (100), Expect = 0.041, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 51/148 (34%), Gaps = 40/148 (27%) Query: 6 EDYSFFVPDKQKNDQP---KNKEEQLFFSFPRCLGISRDDLLVHSAI-----EQAVRLID 57 ++ S F Q + P + + + L DD V + LI+ Sbjct: 2 KEESLFSLANQNENTPLADRVRPQNL------------DDF-VGQENLIGHGKILRDLIE 48 Query: 58 SWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID 117 +IL GP G+GK+ LA I + ++++ + A + I ++E+ + Sbjct: 49 KDR---VPSLILWGPPGTGKTTLAEIIAKRTKAHFITFSAVTSSIKDIRK----IMEEAE 101 Query: 118 L---------LDFNDTQLFHIINSIHQY 136 + ++ H N Q Sbjct: 102 QNRQFGERNIVFIDEI---HRFNKAQQD 126 >gi|37525550|ref|NP_928894.1| recombination factor protein RarA [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784978|emb|CAE13896.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 447 Score = 42.8 bits (100), Expect = 0.041, Method: Composition-based stats. Identities = 43/199 (21%), Positives = 69/199 (34%), Gaps = 38/199 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G+GK+ LA I +++ R S + + I K + T Sbjct: 53 MILWGPPGTGKTTLAEIIGHYAQADVERISAVTSGIKEIRESIEKA----RQNRNAGRRT 108 Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N Q D ++ T L SR A V + Sbjct: 109 ILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSA---LLSR---ARVYLL 162 Query: 171 SLPDDDFLEKVIVKMFAD--RQ-----IFIDKK----LAAYIVQRMERSLVFAEKLVDKM 219 + +E+V+ + +D R I + + +A + RSL E + D Sbjct: 163 KSLTTEEIEQVLEQAMSDKERGYHGQNIVLPENTRHMIAELVAGDARRSLNLLEMMADMA 222 Query: 220 DNLALSRGMGITRSLAAEV 238 + A +T +L EV Sbjct: 223 ETNA-QGQRVLTPALLKEV 240 >gi|187251382|ref|YP_001875864.1| DNA replication initiation ATPase [Elusimicrobium minutum Pei191] gi|186971542|gb|ACC98527.1| ATPase involved in DNA replication initiation [Elusimicrobium minutum Pei191] Length = 215 Score = 42.8 bits (100), Expect = 0.041, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 51/148 (34%), Gaps = 24/148 (16%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA--NI------- 83 P + + +D V + ++ P + + GP+G+GK+ LA I Sbjct: 20 PVHMAYTFEDFEVTGPTKNNYDACRAFVENPLN-LYVYGPAGNGKTRLAITAIKNRLLKY 78 Query: 84 ---------WSDKSRSTRFSNIAKSLDSI-LIDTRKPVLLEDIDLLDFNDTQLFHIINSI 133 W D + S + I + RK +L++DI N+T II Sbjct: 79 ADEYGRVIFWEDFKNAVMADMRNDSTEYIDSLARRKCLLIDDIFRNGVNETTKAAIIRLF 138 Query: 134 ----HQYDSSLLMTARTFPVSWGVCLPD 157 + L++T+ L D Sbjct: 139 EKWGNHGKKKLIVTSNKDIEQLSKILED 166 >gi|118431889|ref|NP_148637.2| cell division protein CDC48 [Aeropyrum pernix K1] gi|116063212|dbj|BAA81490.2| cell division control protein 48, AAA family [Aeropyrum pernix K1] Length = 737 Score = 42.8 bits (100), Expect = 0.041, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 46/121 (38%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTR-- 108 P + ++L GP G+GK+ LA ++++ + S + L I + + Sbjct: 221 PPKGILLYGPPGTGKTLLAKAVANEADAYFISINGPEIMSKYYGESEQRLREIFEEAKKN 280 Query: 109 --KPVLLEDIDLLD------------FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + + +++ A P + Sbjct: 281 APSIIFIDEIDAIAPKRDEVVGEVERRVVAQLLALMDGLEARGNVIVIAATNRPNAIDPA 340 Query: 155 L 155 L Sbjct: 341 L 341 Score = 39.7 bits (92), Expect = 0.38, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 19/32 (59%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P R V+L GP G+GK+ LA + +S + + Sbjct: 494 PPRGVLLFGPPGTGKTLLAKAVATESGANFIA 525 >gi|20093924|ref|NP_613771.1| ATPase of the AAA+ class [Methanopyrus kandleri AV19] gi|19886871|gb|AAM01701.1| ATPase of the AAA+ class [Methanopyrus kandleri AV19] Length = 1249 Score = 42.8 bits (100), Expect = 0.041, Method: Composition-based stats. Identities = 23/162 (14%), Positives = 62/162 (38%), Gaps = 32/162 (19%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106 P + V+L GP G+GK+ LA +++ + +S I + + + Sbjct: 248 PPKGVLLYGPPGTGKTLLAKAVANECGAKFYSINGPEIMSKYYGESEARIREVFEEARKN 307 Query: 107 TRKPVLLEDIDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + QL +++ + + + +++ + P Sbjct: 308 APAIIYIDEIDAIAPKRGETGEVERRVVAQLLTLMDGLSEDERVVVLASTNRPDDID--- 364 Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L + ++I +PD + ++++ D + + + Sbjct: 365 PALRRPGRFDKEIEIGVPDKEGRKEILQIHTRD--MPLADDV 404 Score = 39.4 bits (91), Expect = 0.49, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 20/32 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + ++L GP G+GK+ LA +++S + + Sbjct: 590 PPKGILLYGPPGTGKTLLAKAVANESDANFIA 621 >gi|332246193|ref|XP_003272237.1| PREDICTED: ATPase WRNIP1 isoform 2 [Nomascus leucogenys] Length = 592 Score = 42.8 bits (100), Expect = 0.042, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 16/83 (19%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA+I ++ S+ + S + + + D+ N+ Sbjct: 235 PSLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 289 Query: 125 QLF-----------HIINSIHQY 136 F H N Q Sbjct: 290 SFFKRKTILFIDEIHRFNKSQQD 312 >gi|330791557|ref|XP_003283859.1| hypothetical protein DICPUDRAFT_147573 [Dictyostelium purpureum] gi|325086245|gb|EGC39638.1| hypothetical protein DICPUDRAFT_147573 [Dictyostelium purpureum] Length = 851 Score = 42.8 bits (100), Expect = 0.042, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 22/31 (70%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF 93 P + ++L GP G+GK+ LA I S+++ +T F Sbjct: 328 PPKGILLYGPPGTGKTLLARIVSNQTNATLF 358 >gi|302185003|ref|ZP_07261676.1| recombination factor protein RarA [Pseudomonas syringae pv. syringae 642] Length = 440 Score = 42.8 bits (100), Expect = 0.042, Method: Composition-based stats. Identities = 38/210 (18%), Positives = 74/210 (35%), Gaps = 32/210 (15%) Query: 57 DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 ++ +I GP G GK+ LA + + S + + A I V + Sbjct: 40 EALEQGALHSMIFWGPPGVGKTTLAKLLAKVSDAHFETVSAVLAGVKEIRQAVEVARQQA 99 Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162 T LF H N Q D +L+ T L SR Sbjct: 100 GQYGKR-TILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154 Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLV 216 A V + D+ L K++ + + RQ+ + + A ++ + +++ Sbjct: 155 --ARVYVLKSLDEAALRKLVNRALTEERGLGTRQLTLSDEGFAMLMAAAD---GDGRRML 209 Query: 217 DKMDNLA-LSR-GMGITRSLAAEVLKETQQ 244 + ++N + L+ G I L +L ++++ Sbjct: 210 NLLENASDLAEDGSEIDIGLLQSLLGDSRR 239 >gi|281338564|gb|EFB14148.1| hypothetical protein PANDA_011417 [Ailuropoda melanoleuca] Length = 719 Score = 42.8 bits (100), Expect = 0.042, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 60/168 (35%), Gaps = 42/168 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P R V+L GP G GK+ LAN + + A + + + + Sbjct: 248 PPRGVLLHGPPGCGKTLLANAIAGELDLPILKVAATEIVSGVSGESEQKLRELFEQAVSN 307 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151 + +++ID + QL + N++ + L++ A P + Sbjct: 308 APCVLFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNTMAETAQVLVIGATNRPDAL 367 Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKK 196 L +A + + +PD+ E+++ + R++ + + Sbjct: 368 DPALR------RAGRFDREICLGIPDEASRERILRTLC--RKLRLPES 407 >gi|218528117|ref|YP_002418933.1| IstB domain protein ATP-binding protein [Methylobacterium chloromethanicum CM4] gi|218520420|gb|ACK81005.1| IstB domain protein ATP-binding protein [Methylobacterium chloromethanicum CM4] Length = 243 Score = 42.8 bits (100), Expect = 0.042, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 57/150 (38%), Gaps = 36/150 (24%) Query: 32 FPRCLGISRDDLLVHSAIEQAVR-------LIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 FP ++ DL VR L D SR +L+G +GSGK+ LA Sbjct: 65 FPVLKTLAEFDLTASPVNAALVRDLHQGSFLTD------SRNAVLIGGTGSGKTHLAIAI 118 Query: 85 -----SDKSRSTRFSNIAKSLDSILIDTRK------PVLLEDIDLLDFND---------- 123 ++ RF N ++ + + R L +DL+ ++ Sbjct: 119 GANCVREREARVRFFNTVDLVNQLEAEARAGKAGRLASQLARVDLVILDELGYLPFPRAG 178 Query: 124 -TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 LFH+++ +++ +S+++T W Sbjct: 179 GQMLFHLVSRLYER-TSVIVTTNLPFGEWP 207 >gi|310750391|ref|NP_001073044.2| nuclear valosin-containing protein-like [Gallus gallus] Length = 844 Score = 42.8 bits (100), Expect = 0.042, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 58/166 (34%), Gaps = 42/166 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P R +L GP G GK+ LA + + A + D +++ Sbjct: 291 PPRGFLLHGPPGCGKTLLAQAIAGELELPMLKVAATEMVSGVSGESEQKLRELFDQAVLN 350 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHI---INSIHQYDSSLLMTARTFPVSW 151 + +++ID + QL +N++ L++ A P S Sbjct: 351 APCVLFIDEIDAITPKREVASKDMERRIVAQLLTCLDDLNNVAATAQVLVIGATNRPDSL 410 Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFID 194 P L +A + + +PD+ EK++ + R++ + Sbjct: 411 D---PALR---RAGRFDREICLGIPDEAAREKILQTLC--RKLKLP 448 >gi|156551619|ref|XP_001600109.1| PREDICTED: similar to AT01057p [Nasonia vitripennis] Length = 751 Score = 42.8 bits (100), Expect = 0.042, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 29/50 (58%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + + +T FS A SL S + + ++ Sbjct: 509 PARGLLLFGPPGNGKTLLARAVATQCNATFFSISAASLTSKYVGDGEKLV 558 >gi|229543042|ref|ZP_04432102.1| AAA ATPase central domain protein [Bacillus coagulans 36D1] gi|229327462|gb|EEN93137.1| AAA ATPase central domain protein [Bacillus coagulans 36D1] Length = 442 Score = 42.8 bits (100), Expect = 0.042, Method: Composition-based stats. Identities = 33/144 (22%), Positives = 59/144 (40%), Gaps = 21/144 (14%) Query: 54 RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL 113 +I+ +I GP G GK+ LA I +++++S + A + I + V+ Sbjct: 44 EMIEHDR---LSSMIFWGPPGVGKTTLAKIIANQTQSEFINFSAVTSG---IKDIRNVMK 97 Query: 114 EDIDLLDFNDTQ-LF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCS 160 E + + LF H N + S +L+ A T S+ V L S Sbjct: 98 EAEERRQLGEKTILFLDEIHRFNKAQQDAFLPYVENGSIILIGATTENPSFEVNSA-LLS 156 Query: 161 RLKAATVVKISLPDD-DFLEKVIV 183 R K + K++ + + L++ IV Sbjct: 157 RTKVFVLHKLTSSEIVELLKQAIV 180 >gi|15679029|ref|NP_276146.1| ATP-dependent 26S protease regulatory subunit 8 [Methanothermobacter thermautotrophicus str. Delta H] gi|3334301|sp|O27092|PRS2_METTH RecName: Full=Putative 26S protease regulatory subunit homolog MTH_1011 gi|2622113|gb|AAB85507.1| ATP-dependent 26S protease regulatory subunit 8 [Methanothermobacter thermautotrophicus str. Delta H] Length = 372 Score = 42.8 bits (100), Expect = 0.042, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 72/199 (36%), Gaps = 37/199 (18%) Query: 57 DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR------------STRFSNIAKSLDSIL 104 D + W R V+ G G+GK+ LA +++ + + A+ + + Sbjct: 150 DRFRDWAPRNVLFHGSPGTGKTMLAKSLANELKVPLYLIKATSLIGEHVGDGARQIHELY 209 Query: 105 IDTRKP----VLLEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTF 147 K + ++++D + + L ++ I+Q + + A Sbjct: 210 ELASKTAPSVIFIDEMDAIGLDRRYQSLRGDVSEVVNALLTEMDGINQNWGVVTIGATNN 269 Query: 148 PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER 207 P + SR + K+ PDD+ + ++ K + +D + + ++ R Sbjct: 270 PELLDKAI---RSRFEEEIEFKL--PDDEERKLMLEKYIETMPLKVDFPVDK--LVKLTR 322 Query: 208 SLVFAEKLVDKMDNLALSR 226 + + D++ AL R Sbjct: 323 EMSG-RDIKDRVLKTALHR 340 >gi|332019399|gb|EGI59885.1| 26S protease regulatory subunit 6A [Acromyrmex echinatior] Length = 414 Score = 42.8 bits (100), Expect = 0.042, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + +++ST L + I ++ + Sbjct: 194 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRD 245 >gi|326442050|ref|ZP_08216784.1| transposase [Streptomyces clavuligerus ATCC 27064] Length = 503 Score = 42.8 bits (100), Expect = 0.042, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 43/106 (40%), Gaps = 20/106 (18%) Query: 67 VILVGPSGSGKSCLANI----WSDKSRSTRFSNIAK--------------SLDSILIDTR 108 V+L+GP GSG + LA TRF+ A+ + + +++D Sbjct: 346 VVLLGPPGSGTTHLAVALGTRACQAGHGTRFATAAEWVARLTCAHAEGRLTEELVVLDRY 405 Query: 109 KPVLLEDIDLLDFNDTQ--LFHIINSIHQYDSSLLMTARTFPVSWG 152 ++++ + + F+ L H + S S+++TA W Sbjct: 406 ALLIVDGVGAVPFDTESTRLLHRLVSHRYARGSVVVTADRPFGRWS 451 >gi|319892681|ref|YP_004149556.1| Uncharacterized ATPase (AAA family) associated with cysteine desulfurase [Staphylococcus pseudintermedius HKU10-03] gi|317162377|gb|ADV05920.1| Uncharacterized ATPase (AAA family) associated with cysteine desulfurase [Staphylococcus pseudintermedius HKU10-03] Length = 423 Score = 42.8 bits (100), Expect = 0.042, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 63/180 (35%), Gaps = 34/180 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117 +I GP G GK+ +A + + + ++ +D + + +LL++I Sbjct: 43 MIFYGPPGIGKTSIAQAIAGSTAFKFRQLNAVTNTKKDMQMIVDEAKMSGQVILLLDEIH 102 Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 L D L H+ N +L+ T + P + SR A + ++ Sbjct: 103 RLDKAKQDFLLPHLEN-----GKIVLIGATTSNPYHAIN---PAIRSR---AQIFELFPL 151 Query: 174 DDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 D + ++ + D R + ID Y + S ++ ++ LS Sbjct: 152 DKNDIKVALNHALEDEERGLKQFDASIDDDAFEYFATQ---SQGDVRSALNALELAVLSA 208 >gi|316968483|gb|EFV52755.1| putative ATPase, AAA family [Trichinella spiralis] Length = 869 Score = 42.8 bits (100), Expect = 0.042, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 47/121 (38%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G GK+ +A ++++ + F SN+ K+ + + Sbjct: 294 PPRGILLYGPPGCGKTLIARAVANETGAFFFLLNGPEIMSKLAGESESNLRKAFEECEKN 353 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + Q+ +++ + Q +++ A P S Sbjct: 354 APSILFIDEIDAITPKREKTHGEVERRIVSQMLTLMDGLKQRSHVIVIAATNRPNSIDPA 413 Query: 155 L 155 L Sbjct: 414 L 414 Score = 40.9 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 3/81 (3%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL-DF 121 PSR V+ GP G GK+ LA + + ++ S L ++ + + + D Sbjct: 570 PSRGVLFYGPPGCGKTLLAKAIAHECQANFISIKGPELLTMWFGESEANVRDVFDKARAA 629 Query: 122 NDTQLF--HIINSIHQYDSSL 140 LF + + SL Sbjct: 630 APCVLFFDELDSIAKARGGSL 650 >gi|296126532|ref|YP_003633784.1| ATPase AAA [Brachyspira murdochii DSM 12563] gi|296018348|gb|ADG71585.1| AAA ATPase central domain protein [Brachyspira murdochii DSM 12563] Length = 435 Score = 42.8 bits (100), Expect = 0.042, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 70/178 (39%), Gaps = 25/178 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++ GP G GKS +A+I + K++S A + + + R+ + + +L + T L Sbjct: 55 MVFFGPPGVGKSTVASIIAKKTKSEYIKLNAVLSN--VSEIREAIKKAEKNLENRKKTIL 112 Query: 127 F----HIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 F H N Q + S+++ T + L SR+ + + DD Sbjct: 113 FIDEIHRFNKSQQDALLPAVENGSVILIGSTTQNPYFYLNNALLSRI---MLFEFRNLDD 169 Query: 176 DFLEKVIVKMFAD-RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 + + + ++K D R + ++ + IV+ S K ++ L+ Sbjct: 170 NDIREALLKAITDKRGLGEDDVAVEDGAVSLIVRY---SHGDVRKAFTYLEASYLATQ 224 >gi|225703928|gb|ACO07810.1| 26S protease regulatory subunit 4 [Oncorhynchus mykiss] Length = 440 Score = 42.8 bits (100), Expect = 0.042, Method: Composition-based stats. Identities = 28/208 (13%), Positives = 67/208 (32%), Gaps = 49/208 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + VIL G G+GK+ LA ++++ +T + L + ++ Sbjct: 218 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRAVGSELIQKYLGDGPKLVRELFRVAEEH 277 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTART---- 146 +++ID + L ++N + + D ++M Sbjct: 278 APSIVFIDEIDAIGTKRYDSNSGGEREIQRTLLELLNQLDGFDSRGDVKVIMATNRIETL 337 Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA--AYIVQR 204 P D ++ LPD+ ++ + + + + I+ + Sbjct: 338 DPALIRPGRIDRK--------IEFPLPDEKTKRRIFQIHTSR--MTVADDVILDDLILAK 387 Query: 205 MERSLVFAEKLVDKMDNLALSRGM-GIT 231 + S + + + +AL +T Sbjct: 388 DDLSGADIKAICTEAGLMALGGRRMKVT 415 >gi|158295544|ref|XP_316268.4| AGAP006205-PA [Anopheles gambiae str. PEST] gi|157016089|gb|EAA10786.4| AGAP006205-PA [Anopheles gambiae str. PEST] Length = 1020 Score = 42.8 bits (100), Expect = 0.042, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 23/58 (39%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120 P R +L GP GSGK+ LA + + A L + + + + + + Sbjct: 338 PPRGFLLHGPPGSGKTLLAQAIAGQLNVRLIEVPATELVAGVSGESEERIRDVFEQAA 395 Score = 38.2 bits (88), Expect = 1.0, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 PS V+ L GP G GK+ LA ++++ S L ++ + + + Sbjct: 766 PSGVL-LCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYVGESERAV 814 >gi|332246195|ref|XP_003272238.1| PREDICTED: ATPase WRNIP1 isoform 3 [Nomascus leucogenys] Length = 587 Score = 42.8 bits (100), Expect = 0.042, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 16/83 (19%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA+I ++ S+ + S + + + D+ N+ Sbjct: 235 PSLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 289 Query: 125 QLF-----------HIINSIHQY 136 F H N Q Sbjct: 290 SFFKRKTILFIDEIHRFNKSQQD 312 >gi|307206656|gb|EFN84628.1| Spastin [Harpegnathos saltator] Length = 578 Score = 42.8 bits (100), Expect = 0.042, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 29/50 (58%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + + +T FS A SL S + + ++ Sbjct: 336 PARGLLLFGPPGNGKTLLARAVATQCNATFFSISAASLTSKYVGEGEKLV 385 >gi|307190289|gb|EFN74381.1| 26S protease regulatory subunit 6A [Camponotus floridanus] gi|322796826|gb|EFZ19244.1| hypothetical protein SINV_06515 [Solenopsis invicta] Length = 428 Score = 42.8 bits (100), Expect = 0.042, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + +++ST L + I ++ + Sbjct: 208 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRD 259 >gi|289740289|gb|ADD18892.1| 26S proteasome regulatory complex ATPase RPT5 [Glossina morsitans morsitans] Length = 427 Score = 42.8 bits (100), Expect = 0.042, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + +++ST L + I ++ + Sbjct: 207 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRD 258 >gi|219851580|ref|YP_002466012.1| proteasome-activating nucleotidase [Methanosphaerula palustris E1-9c] gi|254783493|sp|B8GGN4|PAN_METPE RecName: Full=Proteasome-activating nucleotidase; Short=PAN; AltName: Full=Proteasomal ATPase; AltName: Full=Proteasome regulatory ATPase; AltName: Full=Proteasome regulatory particle gi|219545839|gb|ACL16289.1| 26S proteasome subunit P45 family [Methanosphaerula palustris E1-9c] Length = 412 Score = 42.8 bits (100), Expect = 0.042, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + ++ + + L I ++ E Sbjct: 186 PPKGVLLHGPPGTGKTLLARAVAHQTEAHFLRVVGSELVQKYIGEGARLVRE 237 >gi|91087475|ref|XP_967673.1| PREDICTED: similar to 26S protease regulatory subunit 6a [Tribolium castaneum] gi|270010662|gb|EFA07110.1| hypothetical protein TcasGA2_TC010100 [Tribolium castaneum] Length = 426 Score = 42.8 bits (100), Expect = 0.042, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + +++ST L + I ++ + Sbjct: 206 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRD 257 >gi|54287936|gb|AAV31415.1| putative 26S protease regulatory subunit 6A [Toxoptera citricida] Length = 431 Score = 42.8 bits (100), Expect = 0.042, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + +++ST L + I ++ + Sbjct: 212 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRD 263 >gi|117925981|ref|YP_866598.1| IstB ATP binding domain-containing protein [Magnetococcus sp. MC-1] gi|117609737|gb|ABK45192.1| IstB domain protein ATP-binding protein [Magnetococcus sp. MC-1] Length = 239 Score = 42.8 bits (100), Expect = 0.042, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 56/148 (37%), Gaps = 33/148 (22%) Query: 32 FPRCLGISRDDLLVHSAIEQAVR------LIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 FP + D SA E +R +D + +ILVG +G+GK+ LA + Sbjct: 65 FPSQKNLDSFDFTASSANEGRIRTLYDGEFLDG-----AGNIILVGGTGTGKTHLAIAVA 119 Query: 86 D-------KSRSTRFSNIAKSLDSILIDTRKPVLLEDI---DLLDFND-----------T 124 + R ++ L+ D L E + LL ++ Sbjct: 120 ANCIRLGKRCRYFSVVDLVNKLEREQADGLAGRLAEKLLRTHLLVLDELGYRPFSKTGGA 179 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWG 152 LFH+I+ +++ +SL++T W Sbjct: 180 LLFHLISKLYE-QTSLIVTTNLTFGEWP 206 >gi|328768472|gb|EGF78518.1| hypothetical protein BATDEDRAFT_37257 [Batrachochytrium dendrobatidis JAM81] Length = 434 Score = 42.8 bits (100), Expect = 0.043, Method: Composition-based stats. Identities = 22/167 (13%), Positives = 56/167 (33%), Gaps = 38/167 (22%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + ++ GP G+GK+ LA + ++ + L + I ++ Sbjct: 214 PPKGCLMYGPPGTGKTLLARACAAQTNACFLKLAGPQLVQMFIGDGAKLVRDAFNLAKEK 273 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151 +++ID + + ++N + D ++ A Sbjct: 274 APAIIFIDEIDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRIDIL 333 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L L S RL ++ P+++ +++ R++ + + Sbjct: 334 DPAL--LRSGRLD--RKIEFPHPNEEARARIMQ--IHSRKMTVSPDV 374 >gi|312622691|ref|YP_004024304.1| AAA ATPase central domain-containing protein [Caldicellulosiruptor kronotskyensis 2002] gi|312203158|gb|ADQ46485.1| AAA ATPase central domain protein [Caldicellulosiruptor kronotskyensis 2002] Length = 441 Score = 42.8 bits (100), Expect = 0.043, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 59/138 (42%), Gaps = 23/138 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID---LLDFND 123 +IL GP G+GK+ +A++ ++ + T F I ++ + + ++E+ Sbjct: 55 IILYGPPGTGKTTIAHVIANATGKT-FKTINATIAGVNDIKK---IIEEAKFEFTQTGKK 110 Query: 124 TQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 T LF H N + + +L+ A T + V L SR + V ++ Sbjct: 111 TILFIDEIHRFNKLQQDALLPSVEEGVIILIGATTENPFYEVNKA-LVSR---SLVFELF 166 Query: 172 LPDDDFLEKVIVKMFADR 189 ++ + K+I + +D+ Sbjct: 167 PLKEEDILKIIERAISDK 184 >gi|307199279|gb|EFN79932.1| 26S protease regulatory subunit 4 [Harpegnathos saltator] Length = 486 Score = 42.8 bits (100), Expect = 0.043, Method: Composition-based stats. Identities = 31/206 (15%), Positives = 69/206 (33%), Gaps = 45/206 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + VIL GP G+GK+ LA ++++ +T + L + ++ Sbjct: 264 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEH 323 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTART---- 146 +++ID + + ++N + + D ++M Sbjct: 324 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVVMATNRIETL 383 Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206 P D ++ LPD+ ++ + + D LA I+ + + Sbjct: 384 DPALIRPGRIDRK--------IEFPLPDEKTKRRIFNIHTSRMTLAPDVNLAELIMAKDD 435 Query: 207 RSLVFAEKLVDKMDNLALSRGM-GIT 231 S + + + +AL +T Sbjct: 436 LSGADIKAICTEAGLMALRERRMKVT 461 >gi|307197075|gb|EFN78443.1| 26S protease regulatory subunit 6A [Harpegnathos saltator] Length = 386 Score = 42.8 bits (100), Expect = 0.043, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + +++ST L + I ++ + Sbjct: 166 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRD 217 >gi|298252773|ref|ZP_06976567.1| helicase subunit of the Holliday junction resolvase-like ATPase [Gardnerella vaginalis 5-1] gi|297533137|gb|EFH72021.1| helicase subunit of the Holliday junction resolvase-like ATPase [Gardnerella vaginalis 5-1] Length = 462 Score = 42.8 bits (100), Expect = 0.043, Method: Composition-based stats. Identities = 44/209 (21%), Positives = 80/209 (38%), Gaps = 46/209 (22%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 V+L GP G GK+ LA I + +S ++ K + ++L + ++ + Sbjct: 62 VVLFGPPGVGKTTLAYIVARQSGRVFEELSAVTSGVKDVRAVLDRAHERLV------SNG 115 Query: 122 NDTQLF--HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVK 169 +T LF + +LL + A T S+ + P L SR + VVK Sbjct: 116 QETVLFIDEVHRFSKSQQDALLPSVENRDVTFIGATTENPSFSIIKP-LLSR---SVVVK 171 Query: 170 ISLPDDDFLEKVIVKMFA-----DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL-- 222 ++ + L +I + + Q+ I+ I+ R+ S A K + ++ Sbjct: 172 LASLSVEDLHTLIERALTSENGLNNQLKINDDAIDSII-RL--SGGDARKTLTILEAAAG 228 Query: 223 ------ALSRGMG---ITRSLAAEVLKET 242 AL G IT + + V+ T Sbjct: 229 AVTGDVALQHGKKKPVITADIVSNVMDTT 257 >gi|291409441|ref|XP_002721014.1| PREDICTED: Werner helicase interacting protein [Oryctolagus cuniculus] Length = 589 Score = 42.8 bits (100), Expect = 0.043, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 16/83 (19%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA+I ++ S+ + S + + + D+ N+ Sbjct: 186 PSLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 240 Query: 125 QLF-----------HIINSIHQY 136 F H N Q Sbjct: 241 SFFKRKTILFIDEIHRFNKSQQD 263 >gi|227533349|ref|ZP_03963398.1| recombination ATPase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227189020|gb|EEI69087.1| recombination ATPase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 448 Score = 42.8 bits (100), Expect = 0.043, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 21/138 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI-----------LIDTRKPVLL 113 +I GP G GK+ LA I + ++++ FS + + I + + V + Sbjct: 51 MIFWGPPGVGKTTLARIIARRTKAQFVTFSAVTSGIKEIKQVMKEAEQNRELGQKTIVFV 110 Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 ++I + F + S +L+ A T S+ V L SR + V + Sbjct: 111 DEIHRFNKAQQDAFLPY---VERGSIILIGATTENPSFEVNAA-LLSRTR---VFVLHGL 163 Query: 174 DDDFLEKVIVKMFAD-RQ 190 L ++ + D R Sbjct: 164 TSAELVDLLQRALKDPRG 181 >gi|255947800|ref|XP_002564667.1| Pc22g06370 [Penicillium chrysogenum Wisconsin 54-1255] gi|211591684|emb|CAP97925.1| Pc22g06370 [Penicillium chrysogenum Wisconsin 54-1255] Length = 539 Score = 42.8 bits (100), Expect = 0.043, Method: Composition-based stats. Identities = 35/221 (15%), Positives = 75/221 (33%), Gaps = 42/221 (19%) Query: 44 LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS--------- 94 LV LI+ +IL G +G+GK+ +A + + S Sbjct: 141 LVGP-NGILRGLIEQDR---VPSMILWGSAGTGKTTIARVIASLVGSRFVEINSTSSGVA 196 Query: 95 ----NIAKSLDSILIDTRKPVLL-EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPV 149 A++ + + RK ++ ++I + +F + L+ A T Sbjct: 197 ECKKIFAEARSELGLTGRKTIIFCDEIHRFSKSQQDVFL---GPVESGQVTLIGATTENP 253 Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF------IDKKLAAYIVQ 203 S+ V L SR ++ D+ + ++ + +D++L Y+ + Sbjct: 254 SFKVQNA-LLSR---CRTFTLAKLTDEDIISILHRALQVEGPSYSPSELVDEELIQYLAR 309 Query: 204 RMERSLVFAEKLVDK---------MDNLALSRGMGITRSLA 235 + + L++ MD L +T++L Sbjct: 310 FADGDARTSLNLLELAMDLSKRAGMDKEDL--KRSLTKTLV 348 >gi|191636983|ref|YP_001986149.1| recombination factor protein RarA [Lactobacillus casei BL23] gi|190711285|emb|CAQ65291.1| Chromosome segregation helicase (Putative) [Lactobacillus casei BL23] gi|327381009|gb|AEA52485.1| hypothetical protein LC2W_0149 [Lactobacillus casei LC2W] gi|327384185|gb|AEA55659.1| hypothetical protein LCBD_0159 [Lactobacillus casei BD-II] Length = 448 Score = 42.8 bits (100), Expect = 0.043, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 21/138 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI-----------LIDTRKPVLL 113 +I GP G GK+ LA I + ++++ FS + + I + + V + Sbjct: 51 MIFWGPPGVGKTTLARIIARRTKAQFVTFSAVTSGIKEIKQVMKEAEQNRELGQKTIVFV 110 Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 ++I + F + S +L+ A T S+ V L SR + V + Sbjct: 111 DEIHRFNKAQQDAFLPY---VERGSIILIGATTENPSFEVNAA-LLSRTR---VFVLHGL 163 Query: 174 DDDFLEKVIVKMFAD-RQ 190 L ++ + D R Sbjct: 164 TSAELVDLLQRALKDPRG 181 >gi|109069425|ref|XP_001090684.1| PREDICTED: ATPase WRNIP1 isoform 3 [Macaca mulatta] Length = 665 Score = 42.8 bits (100), Expect = 0.043, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 16/83 (19%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA+I ++ S+ + S + + + D+ N+ Sbjct: 262 PSLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 316 Query: 125 QLF-----------HIINSIHQY 136 F H N Q Sbjct: 317 SFFKRKTILFIDEIHRFNKSQQD 339 >gi|83720479|ref|YP_442107.1| recombination factor protein RarA [Burkholderia thailandensis E264] gi|167619051|ref|ZP_02387682.1| recombination factor protein RarA [Burkholderia thailandensis Bt4] gi|257138292|ref|ZP_05586554.1| recombination factor protein RarA [Burkholderia thailandensis E264] gi|83654304|gb|ABC38367.1| ATPase, AAA family protein [Burkholderia thailandensis E264] Length = 436 Score = 42.8 bits (100), Expect = 0.043, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 61/173 (35%), Gaps = 28/173 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA + + + A I + ++ + T L Sbjct: 50 MILWGPPGVGKTTLARLTALAFDCEFIALSAVLGGVKDIREAMEQARDTLNRTGRH-TIL 108 Query: 127 F----HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 F H N Q +LL + A T S+ V L SR A V + Sbjct: 109 FVDEIHRFNKAQQD--ALLPFVESGLVTFIGATTENPSFEVNSA-LLSR---AQVYVLKS 162 Query: 173 PDDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 +D L +++ K D + D K +V + A + ++ ++ Sbjct: 163 LTEDELRQLL-KRAQDTALDGLAFDDKAVDTLVGYAD---GDARRFLNLLEQA 211 >gi|116493737|ref|YP_805471.1| recombination factor protein RarA [Lactobacillus casei ATCC 334] gi|239630989|ref|ZP_04674020.1| recombination factor protein RarA [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301065310|ref|YP_003787333.1| helicase subunit of the Holliday junction resolvase-like ATPase [Lactobacillus casei str. Zhang] gi|116103887|gb|ABJ69029.1| Recombination protein MgsA [Lactobacillus casei ATCC 334] gi|239527272|gb|EEQ66273.1| recombination factor protein RarA [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300437717|gb|ADK17483.1| Helicase subunit of the Holliday junction resolvase related ATPase [Lactobacillus casei str. Zhang] Length = 448 Score = 42.8 bits (100), Expect = 0.043, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 21/138 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI-----------LIDTRKPVLL 113 +I GP G GK+ LA I + ++++ FS + + I + + V + Sbjct: 51 MIFWGPPGVGKTTLARIIARRTKAQFVTFSAVTSGIKEIKQVMKEAEQNRELGQKTIVFV 110 Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 ++I + F + S +L+ A T S+ V L SR + V + Sbjct: 111 DEIHRFNKAQQDAFLPY---VERGSIILIGATTENPSFEVNAA-LLSRTR---VFVLHGL 163 Query: 174 DDDFLEKVIVKMFAD-RQ 190 L ++ + D R Sbjct: 164 TSAELVDLLQRALKDPRG 181 >gi|308510670|ref|XP_003117518.1| CRE-CDC-48.2 protein [Caenorhabditis remanei] gi|308242432|gb|EFO86384.1| CRE-CDC-48.2 protein [Caenorhabditis remanei] Length = 812 Score = 42.8 bits (100), Expect = 0.043, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 47/121 (38%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ K+ + Sbjct: 242 PPRGILLFGPPGTGKTLIARAVANETGAFFFLINGPEIMSKMSGESESNLRKAFAECEKN 301 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + +++ A P S Sbjct: 302 SPAILFIDEIDAIAPKREKAHGEVEKRIVSQLLTLMDGLKTRAHVVVIAATNRPNSIDGA 361 Query: 155 L 155 L Sbjct: 362 L 362 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 515 PSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKA 571 >gi|229051482|ref|ZP_04194975.1| Transposition helper protein, IS21 [Bacillus cereus AH676] gi|229142425|ref|ZP_04270934.1| Transposition helper protein, IS21 [Bacillus cereus BDRD-ST26] gi|229176514|ref|ZP_04303943.1| Transposition helper protein, IS21 [Bacillus cereus MM3] gi|229199897|ref|ZP_04326482.1| Transposition helper protein, IS21 [Bacillus cereus m1293] gi|228583586|gb|EEK41819.1| Transposition helper protein, IS21 [Bacillus cereus m1293] gi|228606951|gb|EEK64344.1| Transposition helper protein, IS21 [Bacillus cereus MM3] gi|228641033|gb|EEK97355.1| Transposition helper protein, IS21 [Bacillus cereus BDRD-ST26] gi|228721872|gb|EEL73323.1| Transposition helper protein, IS21 [Bacillus cereus AH676] Length = 238 Score = 42.8 bits (100), Expect = 0.043, Method: Composition-based stats. Identities = 22/140 (15%), Positives = 51/140 (36%), Gaps = 37/140 (26%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 ++L+GP G GK+ LA ++ ++ ++ D + RK Sbjct: 88 ILLLGPPGVGKTHLAIGFAIEALRQGYTAYYTRADDFITSCRKAEQRGTTSRLVRSLSRC 147 Query: 111 --VLLEDIDLLDFND--TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 ++++++ F++ LF I S S+++T+ S ++ Sbjct: 148 DVLIIDEMGYFPFDELSADLFFRIISKRYEKGSIILTSN-------------KSYIEWGK 194 Query: 167 VVKISLPDDDFLEKVIVKMF 186 + DD V+ ++ Sbjct: 195 IFG----DDVLATAVLDRLL 210 >gi|225164815|ref|ZP_03727041.1| AAA ATPase central domain protein [Opitutaceae bacterium TAV2] gi|224800567|gb|EEG18937.1| AAA ATPase central domain protein [Opitutaceae bacterium TAV2] Length = 401 Score = 42.8 bits (100), Expect = 0.043, Method: Composition-based stats. Identities = 41/198 (20%), Positives = 73/198 (36%), Gaps = 36/198 (18%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRF------SNIAKSLDSILIDTRKPVLLEDIDL 118 ++ GP G GK+ A + ++ S SN+A+ + + + R P E L Sbjct: 7 GSLLFYGPPGCGKTSFAEAIARQTGSRFVRLNAVMSNVAELREILALARRTP---ESPTL 63 Query: 119 LDFNDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 L ++ H N + L+ A T + V P L SR + + ++ Sbjct: 64 LFIDE---LHRFNKSQQDLLLPDVEEGYVRLIGATTHNPGFYVNPP-LLSR---SHLFRL 116 Query: 171 SLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 D + V+ + AD R + D K+ A + + L A ++ + L+ Sbjct: 117 EPLRADAVATVLTRALADTERGLGNRHHTADAKILADLATLCDGDLRRALNALEVI-ALS 175 Query: 224 LSRGMGITRS----LAAE 237 L IT + A E Sbjct: 176 LPEAAPITEAELEVFARE 193 >gi|220912773|ref|YP_002488082.1| recombination factor protein RarA [Arthrobacter chlorophenolicus A6] gi|219859651|gb|ACL39993.1| AAA ATPase central domain protein [Arthrobacter chlorophenolicus A6] Length = 466 Score = 42.8 bits (100), Expect = 0.043, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 65/173 (37%), Gaps = 23/173 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G+GK+ LA++ + S I + + + D+ T Sbjct: 76 LILWGPPGTGKTTLAHVIARGPGRKFVELSAITAGVKDVRRVMDDALTARDLYKTT---T 132 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + +L+ A T S+ V P L + ++ + Sbjct: 133 VLFLDEIHRFNKAQQDALLPGVENRWVVLVAATTENPSFSVVSPL----LSRSLLLTLKP 188 Query: 173 PDDDFLEKVIVKMFAD-RQIFIDKKLAAYIVQRMER-SLVFAEKLVDKMDNLA 223 D +E ++ + AD R + +LA + + R S A + + ++ A Sbjct: 189 LTDADIEGLLSRAVADPRGLDGKAELAPEALAHLVRLSGGDARRALTALEAAA 241 >gi|166712096|ref|ZP_02243303.1| recombination factor protein RarA [Xanthomonas oryzae pv. oryzicola BLS256] Length = 458 Score = 42.8 bits (100), Expect = 0.043, Method: Composition-based stats. Identities = 42/212 (19%), Positives = 73/212 (34%), Gaps = 29/212 (13%) Query: 54 RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL 113 L ++ S +IL GP G GK+ LA + + + + F I+ L + + R+ + Sbjct: 49 ALRRAFESGRVHSMILWGPPGCGKTTLALLLAHYADAE-FKAISAVLSGLP-EVRQVLAE 106 Query: 114 EDIDLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLC 159 D D T LF H N Q ++L T L Sbjct: 107 ADQRFADGRRTVLFVDEVHRFNKAQQDAFLPHIERGTILFVGATTENPSFELNSA---LL 163 Query: 160 SRLKAATVVKISLPD--DDFLEKVIVKMFADRQI-----FIDKKLAAYIVQRMERSLVFA 212 SR + + +S D + + A+R + + + I + + A Sbjct: 164 SRCRVHVLEGVSPQDIVEALQRAL---HDAERGLGQQTIQVSEASLLEIASAADGDVRRA 220 Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 L++ LA G IT +VL + + Sbjct: 221 LTLLEIAAELATGEGGEITPRTLLQVLADRTR 252 >gi|190015588|ref|YP_001967328.1| transposition helper protein, IS21 family [Bacillus cereus] gi|217956852|ref|YP_002335946.1| transposition helper protein, IS21 family [Bacillus cereus AH187] gi|116584495|gb|ABK00612.1| transposition helper protein, IS21 family [Bacillus cereus] gi|217068488|gb|ACJ82736.1| transposition helper protein, IS21 family [Bacillus cereus AH187] Length = 252 Score = 42.8 bits (100), Expect = 0.043, Method: Composition-based stats. Identities = 22/140 (15%), Positives = 51/140 (36%), Gaps = 37/140 (26%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 ++L+GP G GK+ LA ++ ++ ++ D + RK Sbjct: 102 ILLLGPPGVGKTHLAIGFAIEALRQGYTAYYTRADDFITSCRKAEQRGTTSRLVRSLSRC 161 Query: 111 --VLLEDIDLLDFND--TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 ++++++ F++ LF I S S+++T+ S ++ Sbjct: 162 DVLIIDEMGYFPFDELSADLFFRIISKRYEKGSIILTSN-------------KSYIEWGK 208 Query: 167 VVKISLPDDDFLEKVIVKMF 186 + DD V+ ++ Sbjct: 209 IFG----DDVLATAVLDRLL 224 >gi|70943427|ref|XP_741761.1| 26S proteasome regulatory subunit 4 [Plasmodium chabaudi chabaudi] gi|56520345|emb|CAH77685.1| 26S proteasome regulatory subunit 4, putative [Plasmodium chabaudi chabaudi] Length = 293 Score = 42.8 bits (100), Expect = 0.043, Method: Composition-based stats. Identities = 31/206 (15%), Positives = 68/206 (33%), Gaps = 45/206 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + VIL GP G+GK+ LA ++++ +T + L + ++ Sbjct: 71 PPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVREMFKVAEDH 130 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTA----RT 146 +++ID + + ++N + + D ++M Sbjct: 131 APSIVFIDEIDAVGTKRYEATSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIDSL 190 Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206 P D +++ PD ++ + + D L +++ + E Sbjct: 191 DPALIRPGRIDRK--------IQLPNPDTKTKRRIFQIHTSKMTMSPDVDLEEFVMSKDE 242 Query: 207 RSLVFAEKLVDKMDNLALSRGM-GIT 231 S + + + LAL IT Sbjct: 243 LSGADIKAICTEAGLLALRERRMKIT 268 >gi|330507008|ref|YP_004383436.1| AAA family ATPase [Methanosaeta concilii GP-6] gi|328927816|gb|AEB67618.1| AAA family ATPase, CDC48 subfamily [Methanosaeta concilii GP-6] Length = 758 Score = 42.8 bits (100), Expect = 0.044, Method: Composition-based stats. Identities = 26/205 (12%), Positives = 73/205 (35%), Gaps = 57/205 (27%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106 P + V+L GP G+GK+ LA +++S + S + + + Sbjct: 242 PPKGVLLHGPPGTGKTMLAKAVANESDAYFISINGPEIMSKYYGESEKALRDLFEEAEKN 301 Query: 107 TRKPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 T + L+++D + QL +++ + + + +++ + P + + Sbjct: 302 TPAIIFLDELDSIAPKRGDVTGEVERRVVAQLLSLMDGLKERKNVIVIGSTNRPEALDMA 361 Query: 155 LP-----DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA--AYI------ 201 L D +++ +PD + ++ R + + + + Y Sbjct: 362 LRRPGRFD--------REIELGVPDMEGRLEIFQ--IHTRGMPLHEDVVLEDYAIETYGF 411 Query: 202 ----VQRMERS--LVFAEKLVDKMD 220 + + R + +++ ++D Sbjct: 412 VGADIAAVSREAAMNALRRILPQID 436 >gi|327541880|gb|EGF28391.1| chromosomal replication initiator protein dnaA [Rhodopirellula baltica WH47] Length = 384 Score = 42.8 bits (100), Expect = 0.044, Method: Composition-based stats. Identities = 31/205 (15%), Positives = 64/205 (31%), Gaps = 51/205 (24%) Query: 64 SRVVILVGPSGSGKS----CLA------NIWSD--------------------------- 86 SR ++LVG G+GK+ L+ N+W Sbjct: 59 SRPMLLVGQPGTGKTALALHLSKRMSISNVWEAMEMDKDTAQGGPSGVTSRVLSSRVLYQ 118 Query: 87 ------KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD---FNDTQLFHIINSIHQYD 137 + ++ + +DT ++L+D+ L+ +L + + Sbjct: 119 PAIDFAREFASSIDSKDMPRFREKLDTVPILVLDDLHLIADKGPAQEELAQRLEARDAEG 178 Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 ++T R P P L SR V + P D ++ ++ ++ + Sbjct: 179 RLTIVTCRRLPSEVRGLRPALVSRTLPGLTVTLHPPAGDTRRTILRELMLAHLPDVEPEA 238 Query: 198 AAYIVQRME-----RSLVFAEKLVD 217 + + + R+ A K V Sbjct: 239 LSLLDAGLPAESTVRAFESAIKQVA 263 >gi|169350137|ref|ZP_02867075.1| hypothetical protein CLOSPI_00879 [Clostridium spiroforme DSM 1552] gi|169292920|gb|EDS75053.1| hypothetical protein CLOSPI_00879 [Clostridium spiroforme DSM 1552] Length = 330 Score = 42.8 bits (100), Expect = 0.044, Method: Composition-based stats. Identities = 36/208 (17%), Positives = 72/208 (34%), Gaps = 49/208 (23%) Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P V+L GP G GK+ ++ I +++ + S++ LE D+L Sbjct: 47 RDEPLDHVLLYGPPGLGKTTMSMIIANEMGTNIKITTGPSIEKTGDLVAILTALEPGDVL 106 Query: 120 DFNDTQLFHIINSIHQYDSS---------LLMTARTFPVSWGVCLP------------DL 158 ++ H +N + + +++ S + LP DL Sbjct: 107 FIDEI---HRLNKVVEEILYPAMEDFCVDVVIGKEASTRSVRIDLPPFTLVGATTRAGDL 163 Query: 159 CS--RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK--------------LAAYIV 202 + R + V K+ +D L+ +I + Q+ +D +A + Sbjct: 164 SAPLRDRFGIVSKLEYYSEDELKVIIDRTSRVYQMPMDDDAKTALAMRSRGTPRIANRLF 223 Query: 203 QRMERSLV--------FAEKLVDKMDNL 222 +R+ R E+ V+ +D L Sbjct: 224 RRV-RDFAQFNGEEIITKERTVEALDRL 250 >gi|195030434|ref|XP_001988073.1| GH10966 [Drosophila grimshawi] gi|193904073|gb|EDW02940.1| GH10966 [Drosophila grimshawi] Length = 356 Score = 42.8 bits (100), Expect = 0.044, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 11/76 (14%) Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 T+R P SR +++ P + + V+ + + +LA +V Sbjct: 168 TSRIIPAI--------RSR---CLGIRVPAPSESDMAAVLQNTCKREGLVLPPELAKRVV 216 Query: 203 QRMERSLVFAEKLVDK 218 + ER++ A +++ Sbjct: 217 DKSERNMRRALLMLEA 232 >gi|156553813|ref|XP_001604886.1| PREDICTED: similar to 26S protease regulatory subunit 6a [Nasonia vitripennis] Length = 428 Score = 42.8 bits (100), Expect = 0.044, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + +++ST L + I ++ + Sbjct: 208 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRD 259 >gi|118577136|ref|YP_876879.1| AAA ATPase [Cenarchaeum symbiosum A] gi|118195657|gb|ABK78575.1| AAA ATPase [Cenarchaeum symbiosum A] Length = 728 Score = 42.8 bits (100), Expect = 0.044, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 59/159 (37%), Gaps = 33/159 (20%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK----P 110 V+L GP G+GK+ LA +++S + S L I + R+ Sbjct: 214 VLLYGPPGTGKTLLAKAVANESNAHFISISGPEIMSKFYGESEARLREIFKEAREKAPSI 273 Query: 111 VLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158 + +++ID + Q+ +++ + ++++A P + P L Sbjct: 274 IFVDEIDSIAPKREEVTGEVERRVVSQMLSLMDGLEARGKVIVISATNRPNAID---PAL 330 Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 + ++I +PD + ++ R + + + Sbjct: 331 RRPGRFDREIEIKVPDKKGRKDIL--AIHTRNMPLTDDV 367 >gi|328855781|gb|EGG04906.1| ATP-dependent 26S proteasome regulatory subunit [Melampsora larici-populina 98AG31] Length = 458 Score = 42.8 bits (100), Expect = 0.044, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 28/57 (49%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P + V++ GP G+GK+ LA + ++++ SL + I ++ + +L Sbjct: 238 PPKGVLMYGPPGTGKTLLARACAAQTKACYLKLAGPSLVQMFIGDGAKLVRDAFELA 294 >gi|325962425|ref|YP_004240331.1| DNA replication protein [Arthrobacter phenanthrenivorans Sphe3] gi|325964152|ref|YP_004242058.1| DNA replication protein [Arthrobacter phenanthrenivorans Sphe3] gi|325964800|ref|YP_004242706.1| DNA replication protein [Arthrobacter phenanthrenivorans Sphe3] gi|323468512|gb|ADX72197.1| DNA replication protein [Arthrobacter phenanthrenivorans Sphe3] gi|323470239|gb|ADX73924.1| DNA replication protein [Arthrobacter phenanthrenivorans Sphe3] gi|323470887|gb|ADX74572.1| DNA replication protein [Arthrobacter phenanthrenivorans Sphe3] Length = 262 Score = 42.8 bits (100), Expect = 0.044, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 56/153 (36%), Gaps = 49/153 (32%) Query: 30 FSFPRCLGISRDD--------LLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 FSF G+ RD L ++ ++L+GP G+GK+ LA Sbjct: 79 FSFDHQPGLKRDTIAHLATGAFLTEASN-----------------IVLLGPPGTGKTHLA 121 Query: 82 N-------------------IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 W + ++ S + + + ++++++ + F Sbjct: 122 TGLGLRATQLGHRVLFATAIDWVARLQAAHQSAR-LPQELVRLRRYGLIIVDEVGYIPFE 180 Query: 123 DTQ---LFHIINSIHQYDSSLLMTARTFPVSWG 152 F +++S +++ +SL++T+ WG Sbjct: 181 QDAANLFFQLVSSRYEH-ASLILTSNLPFARWG 212 >gi|294813543|ref|ZP_06772186.1| IstB domain protein ATP-binding protein [Streptomyces clavuligerus ATCC 27064] gi|294326142|gb|EFG07785.1| IstB domain protein ATP-binding protein [Streptomyces clavuligerus ATCC 27064] Length = 505 Score = 42.8 bits (100), Expect = 0.044, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 43/106 (40%), Gaps = 20/106 (18%) Query: 67 VILVGPSGSGKSCLANI----WSDKSRSTRFSNIAK--------------SLDSILIDTR 108 V+L+GP GSG + LA TRF+ A+ + + +++D Sbjct: 348 VVLLGPPGSGTTHLAVALGTRACQAGHGTRFATAAEWVARLTCAHAEGRLTEELVVLDRY 407 Query: 109 KPVLLEDIDLLDFNDTQ--LFHIINSIHQYDSSLLMTARTFPVSWG 152 ++++ + + F+ L H + S S+++TA W Sbjct: 408 ALLIVDGVGAVPFDTESTRLLHRLVSHRYARGSVVVTADRPFGRWS 453 >gi|221504199|gb|EEE29874.1| conserved hypothetical protein [Toxoplasma gondii VEG] Length = 791 Score = 42.8 bits (100), Expect = 0.044, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 21/32 (65%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P+R ++L GP GSGKS +A I + ++ + + Sbjct: 512 PARSLLLYGPPGSGKSLVARIIATEAGAMFYD 543 >gi|126322071|ref|XP_001368425.1| PREDICTED: similar to Werner helicase interacting protein 1 isoform 1 [Monodelphis domestica] Length = 695 Score = 42.8 bits (100), Expect = 0.044, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 52/148 (35%), Gaps = 28/148 (18%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA I ++ S+ + S S + D+ N+ Sbjct: 287 PSLILWGPPGCGKTTLAYIIANNSKKNSMRFVTLSATSAKTSD-----VRDVIKQAQNEK 341 Query: 125 QLF-----------HIINSIHQY--------DSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 F H N Q + L+ A T S+ V L SR Sbjct: 342 NFFKRKTILFIDEIHRFNKSQQDTFLPHVECGTVTLIGATTENPSFQVNAA-LLSR---C 397 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFI 193 V+ + + ++ ++++ + + + Sbjct: 398 RVIVLEKLSAEAMKTILMRAVSSLGLRV 425 >gi|123448447|ref|XP_001312954.1| ATPase, AAA family protein [Trichomonas vaginalis G3] gi|121894819|gb|EAY00025.1| ATPase, AAA family protein [Trichomonas vaginalis G3] Length = 630 Score = 42.8 bits (100), Expect = 0.044, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 1/51 (1%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKS-RSTRFSNIAKSLDSILIDTRKPVL 112 P+ +IL GP G GK+ LA + ++ R+ S L + + + + Sbjct: 384 PASGIILYGPPGCGKTLLARAIAHEAYRAAFISVKGPELLNKYLGESESAI 434 >gi|322702975|gb|EFY94593.1| mitochondrial chaperone BCS1 [Metarhizium anisopliae ARSEF 23] Length = 842 Score = 42.8 bits (100), Expect = 0.045, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 46/121 (38%), Gaps = 30/121 (24%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID-------TRKPVLLEDID 117 R +L GP G+GKS L + + + + A S+D +++ R VLLEDID Sbjct: 215 RGYLLHGPPGTGKSSLGSALAGEFNLDIYIINAPSVDDQMLEHLFNNLPDRCVVLLEDID 274 Query: 118 LLDFNDTQ----------LFHIINS----IHQYDSSLLMT---------ARTFPVSWGVC 154 + + L ++N+ Q L+MT A P V Sbjct: 275 AIGTDRQGPGKPRKAALSLSGLLNTLDGVASQEGRILIMTTNHVNNLDEALIRPGRIDVK 334 Query: 155 L 155 L Sbjct: 335 L 335 >gi|317177233|dbj|BAJ55022.1| recombination factor protein RarA [Helicobacter pylori F16] Length = 391 Score = 42.8 bits (100), Expect = 0.045, Method: Composition-based stats. Identities = 32/189 (16%), Positives = 70/189 (37%), Gaps = 25/189 (13%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILI--------DTRKPVLLE 114 GP G GK+ LA I + F+ L+ + + + V ++ Sbjct: 38 PHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRLKLKNYQNTLLKPVVFID 97 Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 + L+ + I + D +L++ A T ++ + + SR + + +++ + Sbjct: 98 ETHRLNKTQQEFLLPI---MEKDHALILGASTQDPNYSLSHA-IRSR---SFIFELTPLN 150 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234 L+K+ K + I+ Y++ S A L++ +D A I + Sbjct: 151 KSDLDKLCAKALTLLKKQIEPSAKTYLLNN---SAGDARALLNLLDLSA-----KIENPI 202 Query: 235 AAEVLKETQ 243 E L+ + Sbjct: 203 TLETLQSLR 211 >gi|167761579|ref|ZP_02433706.1| hypothetical protein CLOSCI_03990 [Clostridium scindens ATCC 35704] gi|167660722|gb|EDS04852.1| hypothetical protein CLOSCI_03990 [Clostridium scindens ATCC 35704] Length = 437 Score = 42.8 bits (100), Expect = 0.045, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 61/165 (36%), Gaps = 27/165 (16%) Query: 39 SRDDLLVHSAI----EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 S +D + + +LI+ +I GP G GK+ LA+I + ++++ + Sbjct: 24 SLEDFVGQEHLLGKGRMLRQLIERDQ---ISSMIFWGPPGVGKTTLASIIAGRTKADFIN 80 Query: 95 NIAKS-----LDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIH--------QYDSSLL 141 A + + ++ + + +L ++ H N + S +L Sbjct: 81 FSAVTSGIKEIKEVMRQAEESRCMGIRTVLFVDEI---HRFNKAQQDAFLPFVEKGSIVL 137 Query: 142 MTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 + A T S+ V L SR V + ++ L K++ Sbjct: 138 IGATTENPSFEVNAA-LLSR---CRVFVLKALEETDLVKLLTNAL 178 >gi|254361649|ref|ZP_04977787.1| possible recombination ATPase [Mannheimia haemolytica PHL213] gi|261496364|ref|ZP_05992758.1| putative recombination ATPase [Mannheimia haemolytica serotype A2 str. OVINE] gi|153093167|gb|EDN74183.1| possible recombination ATPase [Mannheimia haemolytica PHL213] gi|261307949|gb|EEY09258.1| putative recombination ATPase [Mannheimia haemolytica serotype A2 str. OVINE] Length = 445 Score = 42.8 bits (100), Expect = 0.045, Method: Composition-based stats. Identities = 42/205 (20%), Positives = 71/205 (34%), Gaps = 39/205 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLED--IDLLDFN 122 +I GP G+GK+ LA I + + R S + + I ++E ++ Sbjct: 52 MIFWGPPGTGKTTLAEIIAHHLDAEVERISAVTSGVKEIRE------VIEQAKLNRQAGR 105 Query: 123 DTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVV 168 T LF H N Q D +++ T L SR A + Sbjct: 106 RTLLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNA---LLSR---ARIY 159 Query: 169 KISLPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKM-D 220 + + K++ AD R + ++ + A + + FA ++ M D Sbjct: 160 ILKPLQAVEILKILQMAIADTERGLGNETLVLEDDVLALLADYVNGDARFALNCLELMVD 219 Query: 221 NLALSRGMGI-TRSLAAEVLKETQQ 244 S + +SL EVL E Q Sbjct: 220 MAQDSAKGKVLNKSLLTEVLGERQA 244 >gi|114605200|ref|XP_001159547.1| PREDICTED: ATPase WRNIP1 isoform 2 [Pan troglodytes] Length = 614 Score = 42.8 bits (100), Expect = 0.045, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 16/83 (19%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA+I + S+ + S + + + D+ N+ Sbjct: 262 PSLILWGPPGCGKTTLAHIIASNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 316 Query: 125 QLF-----------HIINSIHQY 136 F H N Q Sbjct: 317 SFFKRKTILFIDEIHRFNKSQQD 339 >gi|305665149|ref|YP_003861436.1| putative AAA family ATPase protein [Maribacter sp. HTCC2170] gi|88709901|gb|EAR02133.1| putative AAA family ATPase protein [Maribacter sp. HTCC2170] Length = 425 Score = 42.8 bits (100), Expect = 0.045, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 52/140 (37%), Gaps = 24/140 (17%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS---------------TRFSNIAKSLDSILIDTRK 109 +IL GP G+GK+ LANI +++S+ + AK + Sbjct: 40 PSIILWGPPGTGKTTLANIIANESQRPFYILSAINSGVKDIREVIDKAKQTGGLFTAKNP 99 Query: 110 PVLLEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168 + +++I + L + L+ A T S+ V +P L SR V Sbjct: 100 ILFIDEIHRFSKSQQDSLL----GAVEKGWVTLIGATTENPSFEV-IPALLSR---CQVY 151 Query: 169 KISLPDDDFLEKVIVKMFAD 188 ++ + LE ++ + Sbjct: 152 VLNPFGKEDLESLLSRALKQ 171 >gi|297791633|ref|XP_002863701.1| regulatory particle triple-a 4A [Arabidopsis lyrata subsp. lyrata] gi|297309536|gb|EFH39960.1| regulatory particle triple-a 4A [Arabidopsis lyrata subsp. lyrata] Length = 400 Score = 42.8 bits (100), Expect = 0.045, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + V+L GP G+GK+ LA + + ++ ++ I ++ E Sbjct: 172 PPKCVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIRE-------- 223 Query: 123 DTQLFHIINSIHQYD 137 + N ++ Sbjct: 224 ------MFNYAREHQ 232 >gi|160894379|ref|ZP_02075156.1| hypothetical protein CLOL250_01932 [Clostridium sp. L2-50] gi|156864080|gb|EDO57511.1| hypothetical protein CLOL250_01932 [Clostridium sp. L2-50] Length = 605 Score = 42.8 bits (100), Expect = 0.045, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 63/200 (31%), Gaps = 50/200 (25%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + +S FS + + Sbjct: 201 VLLVGPPGTGKTMLAKAVAGESNVPFFSMSGSEFVEMFVGMGASKVRDLFKQAKEKAPCI 260 Query: 111 VLLEDIDL--------LDFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW----- 151 V +++ID + ND QL ++ + +++ A P S Sbjct: 261 VFIDEIDAIGKKRDGQIGGNDEREQTLNQLLTEMDGFEGNNGVIILAATNRPESLDPALT 320 Query: 152 ---------GVCLPDLCSR--LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 V LPDL R + KI + DD + + + Sbjct: 321 RPGRFDRRVPVELPDLKGREAILQVHARKIKVSDDVNFHTIARMAAGASGAELANIVNEA 380 Query: 201 IVQRMERSLVFAEKLVDKMD 220 + R++ +V + D Sbjct: 381 AL----RTVRAGRTIVTEAD 396 >gi|322371776|ref|ZP_08046319.1| proteasome-activating nucleotidase [Haladaptatus paucihalophilus DX253] gi|320548661|gb|EFW90332.1| proteasome-activating nucleotidase [Haladaptatus paucihalophilus DX253] Length = 405 Score = 42.8 bits (100), Expect = 0.045, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 29/65 (44%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P V+L GP G+GK+ LA ++++ +T L I ++ + ++ + Sbjct: 182 PPSGVLLYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLFEVARQH 241 Query: 123 DTQLF 127 + + Sbjct: 242 EPAVL 246 >gi|288930616|ref|YP_003434676.1| ATPase AAA, CDC48 subfamily [Ferroglobus placidus DSM 10642] gi|288892864|gb|ADC64401.1| AAA family ATPase, CDC48 subfamily [Ferroglobus placidus DSM 10642] Length = 791 Score = 42.8 bits (100), Expect = 0.045, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 63/165 (38%), Gaps = 36/165 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109 P + ++L GP G+GK+ LA +++S + S L S + + Sbjct: 546 PPKGILLYGPPGTGKTLLAKAVANESNANFISVKGPELLSKWVGESEKHVREMFRKARQV 605 Query: 110 -PVLL--EDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 P +L ++ID L +QL ++ + + +++ A P Sbjct: 606 APCVLFFDEIDSLAPRRGTGGDTHVTERVVSQLLTELDGLEELKDVVVIAATNRPDMIDP 665 Query: 154 CLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L L RL+ + I PD+ ++ + R + +D+ + Sbjct: 666 AL--LRPGRLE--RHIYIPPPDE--KARLEIFKIHTRGMPLDEDV 704 Score = 42.1 bits (98), Expect = 0.065, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 61/162 (37%), Gaps = 33/162 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109 P + V+L GP G+GK+ +A +++ + + L I + R+ Sbjct: 212 PPKGVLLYGPPGTGKTLIAKAVANEVNAHFIPISGPEIMSKYYGESEQRLREIFEEAREN 271 Query: 110 ---PVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + +++ A P + Sbjct: 272 APSIIFIDEIDSIAPKREEVTGEVERRVVAQLLTLMDGLEARGQVIVIGATNRPDAID-- 329 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196 P L + ++I +PD + ++++ R + I+ Sbjct: 330 -PALRRPGRFDREIEIGVPDREGRKEILQ--IHTRGMPIEPD 368 >gi|251773234|gb|EES53785.1| IstB domain protein ATP-binding protein [Leptospirillum ferrodiazotrophum] Length = 251 Score = 42.8 bits (100), Expect = 0.045, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 44/111 (39%), Gaps = 20/111 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDTR 108 +++ GP+G GK+ LA + FS + SL+ +L + Sbjct: 103 ILIAGPTGVGKTHLACALGQAACRQGFSTLFFSLNRLLEKMALVRAQGRYLSLLKKLTAA 162 Query: 109 KPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL--LMTARTFPVSWGVCLPD 157 ++L+D L QL I + + SL ++T + +W LPD Sbjct: 163 SVIVLDDFGLRALTPPQLQDIYDLVDGRVESLSTIVTTQLPVENWREILPD 213 >gi|229591234|ref|YP_002873353.1| recombination factor protein RarA [Pseudomonas fluorescens SBW25] gi|229363100|emb|CAY50103.1| conserevd hypothetical protein [Pseudomonas fluorescens SBW25] Length = 440 Score = 42.8 bits (100), Expect = 0.045, Method: Composition-based stats. Identities = 37/210 (17%), Positives = 74/210 (35%), Gaps = 32/210 (15%) Query: 57 DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 ++ +I GP G GK+ LA + + S + + A I V + Sbjct: 40 EALEQGALHSMIFWGPPGVGKTTLARLLAKVSDAHFETVSAVLAGVKEIRQAVEVAKQQA 99 Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162 T LF H N Q D +L+ T L SR Sbjct: 100 GQYGKR-TILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154 Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLV 216 A V + D+ ++K++ + + RQ+ + ++ ++ + + + Sbjct: 155 --ARVYVLKSLDEVAMQKLLHRALNEDKGLGKRQLSVSEEGFKILLTAAD---GDGRRFL 209 Query: 217 DKMDNLA-LSR-GMGITRSLAAEVLKETQQ 244 + ++N + L+ G I L +L +T++ Sbjct: 210 NLLENASDLAEDGGEIGVDLLQSLLGDTRR 239 >gi|255071147|ref|XP_002507655.1| predicted protein [Micromonas sp. RCC299] gi|226522930|gb|ACO68913.1| predicted protein [Micromonas sp. RCC299] Length = 427 Score = 42.8 bits (100), Expect = 0.045, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 45/144 (31%), Gaps = 46/144 (31%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P V+ GP G+GK+ LA ++++ + I L + ++ Sbjct: 203 PKGVLC-YGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARLVRELFQMARSK 261 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQYDSS----LLMTARTF--- 147 +++D + + I+N + +D+ +LM Sbjct: 262 KACLIFFDEVDAIGGARFDDGQGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 321 Query: 148 -PVSW---------GVCLPDLCSR 161 P LPDL SR Sbjct: 322 DPALLRPGRLDRKVEFGLPDLESR 345 >gi|84998430|ref|XP_953936.1| 26S proteasome subunit 4 [Theileria annulata] gi|65304934|emb|CAI73259.1| 26S proteasome subunit 4, putative [Theileria annulata] Length = 438 Score = 42.8 bits (100), Expect = 0.045, Method: Composition-based stats. Identities = 31/202 (15%), Positives = 66/202 (32%), Gaps = 44/202 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + VIL GP G+GK+ LA ++++ +T + L + ++ Sbjct: 216 PPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGEGPKLVREMFKVAEDN 275 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTA----RT 146 +++ID + + ++N + Q D ++M Sbjct: 276 APSIIFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSQSDVKVIMATNKIESL 335 Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206 P D +++ PD K+ + + D L ++V + + Sbjct: 336 DPALIRPGRIDRK--------IQLPNPDSKTKRKIFEIHTSKMTMSKDVDLDEFVVNKDD 387 Query: 207 RSLVFAEKLVDKMDNLALSRGM 228 S + + + LAL Sbjct: 388 LSGADIKAMCTEAGLLALRERR 409 >gi|15897214|ref|NP_341819.1| proteasome-activating nucleotidase [Sulfolobus solfataricus P2] gi|284174460|ref|ZP_06388429.1| proteasome-activating nucleotidase [Sulfolobus solfataricus 98/2] gi|20532213|sp|Q980M1|PAN_SULSO RecName: Full=Proteasome-activating nucleotidase; Short=PAN; AltName: Full=Proteasomal ATPase; AltName: Full=Proteasome regulatory ATPase; AltName: Full=Proteasome regulatory particle gi|13813411|gb|AAK40609.1| AAA family ATPase [Sulfolobus solfataricus P2] gi|261601882|gb|ACX91485.1| 26S proteasome subunit P45 family [Sulfolobus solfataricus 98/2] Length = 393 Score = 42.8 bits (100), Expect = 0.045, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + +S + +A + ++ E Sbjct: 167 PPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRE 218 >gi|71747092|ref|XP_822601.1| protease regulatory ATPase subunit 4 [Trypanosoma brucei TREU927] gi|70832269|gb|EAN77773.1| protease regulatory ATPase subunit 4 [Trypanosoma brucei] Length = 399 Score = 42.8 bits (100), Expect = 0.045, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 54/158 (34%), Gaps = 39/158 (24%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V+L GP G+GK+ LA + + +A S+ I VL Sbjct: 176 PPKGVLLYGPPGTGKTLLAKAIASNVDAAFLKIVASSIVDKYIGESARVLREMFAFARDH 235 Query: 113 ------LEDIDLLDFNDT--------------QLFHIINSIHQYDSSLLMTARTFPVSWG 152 ++++D + +L H ++ + ++ A P + Sbjct: 236 EPCIIFIDEVDAIGGKRIEGSSSDREVQRTLMELLHQMDGFEKLGKVKVIMATNRPDTLD 295 Query: 153 VCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFA 187 L ++ + ++I LP++ V+ + Sbjct: 296 PAL------MRPGRLDRKIEIGLPNEAGRLDVLKIHAS 327 >gi|71033449|ref|XP_766366.1| 26S proteasome regulatory subunit 4 [Theileria parva strain Muguga] gi|68353323|gb|EAN34083.1| 26S proteasome regulatory subunit 4, putative [Theileria parva] Length = 415 Score = 42.8 bits (100), Expect = 0.045, Method: Composition-based stats. Identities = 31/202 (15%), Positives = 66/202 (32%), Gaps = 44/202 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + VIL GP G+GK+ LA ++++ +T + L + ++ Sbjct: 193 PPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGEGPKLVREMFKVAEDN 252 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTA----RT 146 +++ID + + ++N + Q D ++M Sbjct: 253 APSIIFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSQSDVKVIMATNKIESL 312 Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206 P D +++ PD K+ + + D L ++V + + Sbjct: 313 DPALIRPGRIDRK--------IQLPNPDSKTKRKIFEIHTSKMTMSKDVDLDEFVVNKDD 364 Query: 207 RSLVFAEKLVDKMDNLALSRGM 228 S + + + LAL Sbjct: 365 LSGADIKAMCTEAGLLALRERR 386 >gi|148910747|gb|ABR18440.1| unknown [Picea sitchensis] Length = 721 Score = 42.8 bits (100), Expect = 0.046, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 56/148 (37%), Gaps = 28/148 (18%) Query: 65 RVVILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL-DF 121 ++ GP G+GK+ LA ++ R + S + L + +LE+ + Sbjct: 242 PSIVFWGPPGTGKTTLARAIANSVSYRFSSVSAVTSGLKEVRE------VLEEAKRMKKM 295 Query: 122 NDTQLF-----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168 LF H N + S + + A T S+ V L SR + T+ Sbjct: 296 GQRTLFFVDEVHRFNKAQQDAFLPVVEDGSIVFIGATTENPSFEVNNA-LLSRCRVLTLN 354 Query: 169 KISLPDDDFLEKVIVKMF--ADRQIFID 194 K+ + + K++ + +D+ + + Sbjct: 355 KLQP---EHIRKLLERAVSDSDKGLMVS 379 >gi|327314193|ref|YP_004329630.1| recombination factor protein RarA [Prevotella denticola F0289] gi|326944810|gb|AEA20695.1| recombination factor protein RarA [Prevotella denticola F0289] Length = 406 Score = 42.8 bits (100), Expect = 0.046, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 73/193 (37%), Gaps = 25/193 (12%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRF-------------SNIAKSLDSILIDTRKPVL- 112 IL GP G GK+ LA I + + + + I ++ + ++ P+L Sbjct: 41 FILWGPPGVGKTTLAQIIAHRLETPFYTLSAVTSGVKDVRDVIERAQNGRFFNSASPILF 100 Query: 113 LEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++I + L + + L+ A T S+ V P L SR + + + Sbjct: 101 IDEIHRFSKSQQDSLL----GAVEKGTVTLIGATTENPSFEVIRP-LLSRCQLYVLKSLE 155 Query: 172 LPDDDFLEKVIVKMFADRQI---FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228 DD L + + D ++ ID +++ +++ + + A + Sbjct: 156 K--DDLLTLLHRAVAEDTELKKRHIDLHETDALLRYSGGDARKLLNILELIVDAAPDGTV 213 Query: 229 GITRSLAAEVLKE 241 +T + E L++ Sbjct: 214 TVTDRIVEERLQQ 226 >gi|315498196|ref|YP_004087000.1| aaa atpase central domain protein [Asticcacaulis excentricus CB 48] gi|315416208|gb|ADU12849.1| AAA ATPase central domain protein [Asticcacaulis excentricus CB 48] Length = 451 Score = 42.8 bits (100), Expect = 0.046, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 43/134 (32%), Gaps = 22/134 (16%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ +A + + F I+ + D +K + Sbjct: 66 PSLILWGPPGVGKTTIARLLAASVG-YEFQQISAVFSGVA-DLKKAFEYAQARRTQGVRS 123 Query: 125 QLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N + L+ T L SR V + Sbjct: 124 VLFVDEIHRFNRAQQDSFLPYVEAGVVTLIGATTENPSFELNGA---LLSR---CQVFVL 177 Query: 171 SLPDDDFLEKVIVK 184 DD+ ++++I + Sbjct: 178 KRLDDEAMDRLIAR 191 >gi|313899860|ref|ZP_07833363.1| recombination factor protein RarA [Clostridium sp. HGF2] gi|312955475|gb|EFR37140.1| recombination factor protein RarA [Clostridium sp. HGF2] Length = 421 Score = 42.8 bits (100), Expect = 0.046, Method: Composition-based stats. Identities = 31/187 (16%), Positives = 75/187 (40%), Gaps = 28/187 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSR-----STRFSNIAKSLDSILIDT----RKPVLLEDID 117 +I GP G+GK+ LA + +++ + K L++I + V+++++ Sbjct: 42 MIFYGPPGTGKTTLAMVLANELELPFRMFNAVTGNKKDLETIFQEAKFYEGLIVIIDEVH 101 Query: 118 LLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 L+ + L H+ N ++ + T P + SR + +I Sbjct: 102 RLNKDKQDLLLPHVEN------GNITLIGATTSNPLHAINPAIRSR---CHLFEIKQAQQ 152 Query: 176 DFLEKVIVKMFA-----DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 + +E+ ++K + + I+++ I + S ++ ++ AL+ I Sbjct: 153 EDIEQALMKAIHHQDGLNDSVQIEEEALHIIARH---SNGDIRYSLNILEICALASDGVI 209 Query: 231 TRSLAAE 237 T+ L ++ Sbjct: 210 TQELVSQ 216 >gi|265756256|ref|ZP_06090585.1| TnpB protein [Bacteroides sp. 3_1_33FAA] gi|263233847|gb|EEZ19456.1| TnpB protein [Bacteroides sp. 3_1_33FAA] Length = 236 Score = 42.8 bits (100), Expect = 0.046, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 48/112 (42%), Gaps = 22/112 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDTR 108 +IL+GPSG+GK+ LA + + +++ I+ I Sbjct: 103 LILIGPSGTGKTFLAAGLVFDAVKADYKAYLMTMEDIVNCLRLKDISTSAMMTYNKILRA 162 Query: 109 KPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 + + ++DI L T F++IN++H+ +S+++T P L D Sbjct: 163 QLLAIDDIMLFPVKRKEATAFFNLINTLHE-KTSIIITTNKAPTECVETLND 213 >gi|239782080|pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating Nucleotidase gi|239782081|pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating Nucleotidase gi|239782082|pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating Nucleotidase Length = 285 Score = 42.8 bits (100), Expect = 0.046, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + ++L GP G+GK+ LA + ++ +T + L I ++ + Sbjct: 50 PPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKD 101 >gi|254573148|ref|XP_002493683.1| Mitochondrial protein involved in sorting of proteins in the mitochondria [Pichia pastoris GS115] gi|238033482|emb|CAY71504.1| Mitochondrial protein involved in sorting of proteins in the mitochondria [Pichia pastoris GS115] gi|328354491|emb|CCA40888.1| Protein MSP1 [Pichia pastoris CBS 7435] Length = 358 Score = 42.8 bits (100), Expect = 0.046, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 46/137 (33%), Gaps = 40/137 (29%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRKP---- 110 V+L GP G GK+ LA + +S + S K +D+I K Sbjct: 128 VLLYGPPGCGKTMLAKALASESGANFISIRMSSVMDKWYGESNKLVDAIFSLANKLQPCI 187 Query: 111 VLLEDIDLLDFNDTQLFH------------IINSIHQYDSSLLMTA------------RT 146 + +++ID + H + + + L++ A R Sbjct: 188 IFIDEIDSFLRERQAMDHEITATLKAEFMTLWDGLTSTGRILVLGATNRPNDIDSAFMRR 247 Query: 147 FPVSWGVCLPDLCSRLK 163 P + V LPD R K Sbjct: 248 MPKRFSVNLPDTEQRFK 264 >gi|313127103|ref|YP_004037373.1| proteasome-activating nucleotidase [Halogeometricum borinquense DSM 11551] gi|312293468|gb|ADQ67928.1| Proteasome-activating nucleotidase [Halogeometricum borinquense DSM 11551] Length = 405 Score = 42.8 bits (100), Expect = 0.046, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 29/64 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P V+L GP G+GK+ LA ++++ ++ L I ++ + ++ N Sbjct: 182 PPSGVLLYGPPGTGKTMLAKAVANQTNASFIKMAGSELVHKFIGEGAKLVRDLFEVAREN 241 Query: 123 DTQL 126 + + Sbjct: 242 EPAV 245 >gi|237843905|ref|XP_002371250.1| AAA family ATPase domain-containing protein [Toxoplasma gondii ME49] gi|211968914|gb|EEB04110.1| AAA family ATPase domain-containing protein [Toxoplasma gondii ME49] gi|221483797|gb|EEE22109.1| conserved hypothetical protein [Toxoplasma gondii GT1] Length = 791 Score = 42.8 bits (100), Expect = 0.046, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 21/32 (65%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P+R ++L GP GSGKS +A I + ++ + + Sbjct: 512 PARSLLLYGPPGSGKSLVARIIATEAGAMFYD 543 >gi|126724895|ref|ZP_01740738.1| ATPase, AAA family protein [Rhodobacterales bacterium HTCC2150] gi|126706059|gb|EBA05149.1| ATPase, AAA family protein [Rhodobacterales bacterium HTCC2150] Length = 438 Score = 42.8 bits (100), Expect = 0.046, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 69/186 (37%), Gaps = 33/186 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I GP G GK+ +A + +D + S I + + + I + T Sbjct: 58 LIFWGPPGVGKTTIARLLADHVDLAFVQISAIFSGVADLKKVFQAAT----IRHQNGQGT 113 Query: 125 QLF----HIINSIHQYD-------SSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N Q ++L+ T L SR + + ++ Sbjct: 114 LLFVDEIHRFNKAQQDGFLPYMENGTILLVGATTENPSFELNAA---LLSRSQVLVLERL 170 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---RSLVFAEKLV------DKMDN 221 SL D +FL + K+ ++++ + +++ + R+L+ + V +D Sbjct: 171 SLIDLEFLAQRAEKLL-EKKLPLTNDSRDALLEMADGDGRTLLNLIEQVSAWKLNASLDR 229 Query: 222 LALSRG 227 AL++ Sbjct: 230 DALAKR 235 >gi|108758871|ref|YP_630990.1| AAA family ATPase [Myxococcus xanthus DK 1622] gi|108462751|gb|ABF87936.1| ATPase, AAA family [Myxococcus xanthus DK 1622] Length = 711 Score = 42.8 bits (100), Expect = 0.046, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 59/159 (37%), Gaps = 33/159 (20%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILIDTRKP 110 V+L GP G GK+ +A + ++ + F +++ + D Sbjct: 223 VLLYGPPGCGKTLIARAVAHETAAAFFTITGPEIMHKFYGESEAHLRQIFDEAQRRAPAI 282 Query: 111 VLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158 + +++ID + QL +++ + Q +++ A P V P L Sbjct: 283 IFVDEIDAIAPRRENVQGEVEKRVVAQLLSLMDGLAQRRHVIVLAATNIP---NVLDPAL 339 Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 + + IS+PD ++++ R + + + + Sbjct: 340 RRPGRFDREIAISIPDRTARKEIL--AIHSRGMPLAEDV 376 >gi|325262409|ref|ZP_08129146.1| ATPase, AAA family [Clostridium sp. D5] gi|324032241|gb|EGB93519.1| ATPase, AAA family [Clostridium sp. D5] Length = 439 Score = 42.8 bits (100), Expect = 0.047, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 57/149 (38%), Gaps = 25/149 (16%) Query: 54 RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPV 111 +LI+ +I GP G GK+ LA+I + ++++ FS + + I + Sbjct: 46 QLIERDQ---ISSMIFWGPPGVGKTTLASIIAGQTKADFINFSAVTSGIKEIKEVMNQA- 101 Query: 112 LLEDIDLLDFNDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLC 159 E + T LF H N + S +L+ A T S+ V L Sbjct: 102 --EQSRRMGIR-TVLFVDEIHRFNKAQQDAFLPFVEKGSIILIGATTENPSFEVNAA-LL 157 Query: 160 SRLKAATVVKISLPDDDFLEKVIVKMFAD 188 SR V + ++ L K++ A+ Sbjct: 158 SR---CRVFVLKALEEKDLVKLLSHALAN 183 >gi|261253433|ref|ZP_05946006.1| ATPase AAA family [Vibrio orientalis CIP 102891] gi|260936824|gb|EEX92813.1| ATPase AAA family [Vibrio orientalis CIP 102891] Length = 428 Score = 42.8 bits (100), Expect = 0.047, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 63/199 (31%), Gaps = 38/199 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G+GK+ LA + ++ + + A + I E+ L T L Sbjct: 34 MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIERAREN--KLAGRRTIL 91 Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172 F H N Q D ++ T L SR A V K++ Sbjct: 92 FVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKLTS 145 Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIV------QRMERSLVFAEKLVDKM 219 + + + D R + + + + RM + + + + Sbjct: 146 LAQQDIRLALKQAIEDKERGLGNVEASFAEGVLDRLSELVNGDARMSLNYLELLYDMAEE 205 Query: 220 DNLALSRGMGITRSLAAEV 238 D IT L AEV Sbjct: 206 DE---QGVKVITLPLLAEV 221 >gi|302530751|ref|ZP_07283093.1| predicted protein [Streptomyces sp. AA4] gi|302439646|gb|EFL11462.1| predicted protein [Streptomyces sp. AA4] Length = 219 Score = 42.8 bits (100), Expect = 0.047, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 61/156 (39%), Gaps = 28/156 (17%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSR----------STRFSNIAKSLDSILIDTRKPVLLE 114 R ++L GP G+GK+ + + RF + A SL L + V+LE Sbjct: 3 RGLLLHGPPGTGKTHTVRYLMGQLPNCTVVILTGVAMRFISQAASLARRLQPSV--VVLE 60 Query: 115 DIDLLDFNDT-------QLFHIINSIH----QYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 D+DL+ + LF +++++ D + L+T S L D R+ Sbjct: 61 DVDLIAEDRALAHGPTPLLFSLLDAMDGVGGDADVTFLLTTNRA-SSLEKALADRPGRVD 119 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199 V++ LPD E ++ R + + L Sbjct: 120 --LAVEVPLPDAAGREALL--RLYSRDLELTADLTP 151 >gi|256078588|ref|XP_002575577.1| 26S protease regulatory subunit 6a [Schistosoma mansoni] gi|238660818|emb|CAZ31810.1| 26S protease regulatory subunit 6a, putative [Schistosoma mansoni] Length = 428 Score = 42.8 bits (100), Expect = 0.047, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + +++ST L + I ++ + Sbjct: 208 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRD 259 >gi|193787734|dbj|BAG52937.1| unnamed protein product [Homo sapiens] Length = 614 Score = 42.8 bits (100), Expect = 0.047, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 16/83 (19%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA+I + S+ + S + + + D+ N+ Sbjct: 262 PSLILWGPPGCGKTTLAHIIASNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 316 Query: 125 QLF-----------HIINSIHQY 136 F H N Q Sbjct: 317 SFFKRKTILFIDEIHRFNKSQQD 339 >gi|81362459|gb|ABB71589.1| 26S proteasome subunit ATPase 3 [Schistosoma mansoni] Length = 407 Score = 42.8 bits (100), Expect = 0.047, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + +++ST L + I ++ + Sbjct: 187 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRD 238 >gi|149054560|gb|EDM06377.1| peptidase (prosome, macropain) 26S subunit, ATPase 5, isoform CRA_f [Rattus norvegicus] Length = 240 Score = 42.8 bits (100), Expect = 0.047, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 22/54 (40%) Query: 61 SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + + T L I ++ E Sbjct: 14 DGPEQGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRE 67 >gi|48101907|ref|XP_392722.1| PREDICTED: 26S protease regulatory subunit 6A [Apis mellifera] Length = 428 Score = 42.8 bits (100), Expect = 0.047, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + +++ST L + I ++ + Sbjct: 208 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRD 259 >gi|195118724|ref|XP_002003886.1| GI18150 [Drosophila mojavensis] gi|193914461|gb|EDW13328.1| GI18150 [Drosophila mojavensis] Length = 356 Score = 42.8 bits (100), Expect = 0.047, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 31/76 (40%), Gaps = 11/76 (14%) Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 T+R P SR +++ P + + V+ + + +LA +V Sbjct: 168 TSRIIPAI--------RSR---CLGIRVPAPSEAEMIAVLQNTCKREGLVLPPELAKRVV 216 Query: 203 QRMERSLVFAEKLVDK 218 ++ ER++ A +++ Sbjct: 217 EKSERNMRRALLMLEA 232 >gi|154148052|ref|YP_001406390.1| recombination factor protein RarA [Campylobacter hominis ATCC BAA-381] gi|153804061|gb|ABS51068.1| ATPase, AAA family [Campylobacter hominis ATCC BAA-381] Length = 392 Score = 42.8 bits (100), Expect = 0.047, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 65/167 (38%), Gaps = 20/167 (11%) Query: 68 ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT----------RKPVLLEDID 117 I GP+GSGK+ LA + +++ T + A +L I + + +++I Sbjct: 38 IFFGPAGSGKTTLAKVLANELNYTFYELDASNLKVEDIRKILNMHENSLYKPLIFIDEIH 97 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 L N ++ I + ++++ A T + V + SR + + Sbjct: 98 RLSKNQQEILLI---PLENQKAVIIGATTENPQF-VLTSGIRSR---CMFFEFKALTNAD 150 Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 L ++ K+ IDK+ Y+ + S A + + +D L Sbjct: 151 LCELFEKVQKSLNFTIDKEAKNYL---ISSSGGDARAMFNLLDFALL 194 >gi|145341718|ref|XP_001415951.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144576174|gb|ABO94243.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 429 Score = 42.8 bits (100), Expect = 0.047, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 45/144 (31%), Gaps = 46/144 (31%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P V+ GP G+GK+ LA ++++ + I L + ++ Sbjct: 205 PKGVLC-YGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARLVRELFQMARSK 263 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQYDSS----LLMTARTF--- 147 +++D + + I+N + +D+ +LM Sbjct: 264 KACLIFFDEVDAIGGARFDDGQGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 323 Query: 148 -PVSW---------GVCLPDLCSR 161 P LPDL SR Sbjct: 324 DPALLRPGRLDRKVEFGLPDLESR 347 >gi|157962052|ref|YP_001502086.1| recombination factor protein RarA [Shewanella pealeana ATCC 700345] gi|157847052|gb|ABV87551.1| AAA ATPase central domain protein [Shewanella pealeana ATCC 700345] Length = 443 Score = 42.8 bits (100), Expect = 0.047, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 72/193 (37%), Gaps = 29/193 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 ++ GP G+GK+ LA + + + + R S + + I +++ T Sbjct: 52 MMFWGPPGTGKTTLAELVARYANAHVERISAVTSGVKEIRSAIEHA---KNVAQSRGQRT 108 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + + + + A T S+ + L SR A V I Sbjct: 109 LLFVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEINNA-LLSR---ARVYVIKQ 164 Query: 173 PDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 + D + +++ + D R+ + +A + Q + A L++ M ++ L Sbjct: 165 LEADEIGQIVQQALKDEERGLGKRKFLLPPDVALKLAQTCDGDARKALNLIELMSDM-LK 223 Query: 226 RGMGITRSLAAEV 238 G T + +V Sbjct: 224 DGEAFTEEMIVQV 236 >gi|331220862|ref|XP_003323106.1| cell division protease ftsH [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309302096|gb|EFP78687.1| cell division protease ftsH [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 830 Score = 42.8 bits (100), Expect = 0.047, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 47/141 (33%), Gaps = 42/141 (29%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK--------------- 109 R V+L GP G+GK+ LA + ++ F D + + Sbjct: 416 RGVLLTGPPGTGKTLLARAVAGEAGVQFFIASGSEFDEMYVGVGARRIRELFAAARKAAP 475 Query: 110 -PVLLEDIDLLDF-----NDTQLFHIINS-------IHQYDSSLLMTARTFPVSWG---- 152 + ++++D + + + +N Q + +LM A FP S Sbjct: 476 AIIFIDELDAIGGKRSPKDQHYMKQTLNQLLVELDGFQQSEGVILMAATNFPASLDKALT 535 Query: 153 ----------VCLPDLCSRLK 163 V LPD R++ Sbjct: 536 RPGRFDRHVAVPLPDARGRIQ 556 >gi|257784257|ref|YP_003179474.1| AAA ATPase central domain-containing protein [Atopobium parvulum DSM 20469] gi|257472764|gb|ACV50883.1| AAA ATPase central domain protein [Atopobium parvulum DSM 20469] Length = 443 Score = 42.8 bits (100), Expect = 0.047, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 55/136 (40%), Gaps = 23/136 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS-------------NIAKSLDSILIDTRKPVL- 112 V+L GP+G+GK+ LA I + + + I + +L R+ +L Sbjct: 56 VLLYGPAGTGKTTLARIIAHTTHAEFVEVSAITGTVKDLRREIEAAESRLLTAGRRTILF 115 Query: 113 LEDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++I L H + +L+ A T + V L SR + VV++ Sbjct: 116 IDEIHRFTRSQQDALLH----AVEDRIVVLIGATTENPYFEVNSA-LISR---SRVVELH 167 Query: 172 LPDDDFLEKVIVKMFA 187 D+ ++++I + Sbjct: 168 ALSDNAIDELIQRALE 183 >gi|269860426|ref|XP_002649934.1| 19S/PA700 proteasome regulatory particle subunit Rpt1p/S7 [Enterocytozoon bieneusi H348] gi|220066621|gb|EED44096.1| 19S/PA700 proteasome regulatory particle subunit Rpt1p/S7 [Enterocytozoon bieneusi H348] Length = 417 Score = 42.8 bits (100), Expect = 0.047, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 14/72 (19%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + V+L GP G+GK+ LA ++++ + I L + ++ E Sbjct: 194 PPKGVLLYGPPGTGKTLLARAVANRTNACFIRVIGSELIQKYVGEGARMIRE-------- 245 Query: 123 DTQLFHIINSIH 134 I N Sbjct: 246 ------IFNLAR 251 >gi|251798346|ref|YP_003013077.1| ATPase AAA [Paenibacillus sp. JDR-2] gi|247545972|gb|ACT02991.1| AAA ATPase central domain protein [Paenibacillus sp. JDR-2] Length = 436 Score = 42.8 bits (100), Expect = 0.047, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 71/208 (34%), Gaps = 49/208 (23%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---- 122 ++L GP G GK+ LANI S ++ A +D + E ID N Sbjct: 54 ILLYGPPGCGKTTLANIISKRTAGEFVKLNA-------VDASVKDVREVIDTAKTNKLMY 106 Query: 123 --DTQLF----HIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 T LF H N+ Q ++ T + L SR +T+ + Sbjct: 107 GKKTILFLDEVHRFNTSRQDALLPAVEQGIIIFIGATTENPFHHVNGALLSR---STLFQ 163 Query: 170 ISLPD-----DDFLEKVIVKMFADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 + + + + K DR + +++ +I + ++ + Sbjct: 164 LEPLNEKHALEAMKRALTDK---DRGLGFMTLHAEEEALQHIAAMAG---GDIRRALNAL 217 Query: 220 DNLALSRGM------GITRSLAAEVLKE 241 + A++ IT +A E +++ Sbjct: 218 ELAAVTTPSEPDGSVRITMEVAQESIRK 245 >gi|166368947|ref|YP_001661220.1| cell division protein [Microcystis aeruginosa NIES-843] gi|166091320|dbj|BAG06028.1| cell division protein [Microcystis aeruginosa NIES-843] Length = 625 Score = 42.8 bits (100), Expect = 0.047, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 77/220 (35%), Gaps = 59/220 (26%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ + FS + + Sbjct: 205 VLLVGPPGTGKTLLAKAVAGEAGVSFFSISGSEFVELFVGAGAARVRDLFEQAKKKAPCI 264 Query: 111 VLLEDIDLL----------DFNDT------QLFHIINSIHQYDSSL-LMTARTFPVSWGV 153 + ++++D + ND QL ++ + D+++ ++ A P + Sbjct: 265 IFIDELDAIGKSRANGNFMGGNDEREQTLNQLLTEMDGFNAGDATVIVLAATNRPETLDT 324 Query: 154 CL--------------PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR-----QIFID 194 L PDL RLK +++I V +K A R + Sbjct: 325 ALLRPGRFDRQVLVDRPDLAGRLK---ILEIYAGKVKLGSGVDLKQIATRTPGFAGADLA 381 Query: 195 KKL--AAYIVQRMERSLVFAEKLVDKMDN--LALSRGMGI 230 + AA + R +RS V E + ++ L + + Sbjct: 382 NLVNEAALLAARNQRSTVAQEDFNEAIERVVAGLEKKSRV 421 >gi|327393324|dbj|BAK10746.1| ATPase AAA family YcaJ [Pantoea ananatis AJ13355] Length = 455 Score = 42.8 bits (100), Expect = 0.048, Method: Composition-based stats. Identities = 43/199 (21%), Positives = 65/199 (32%), Gaps = 38/199 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G+GK+ LA I + + R S + + I + + T Sbjct: 61 MILWGPPGTGKTTLAEIIAHYGNADVERISAVTSGVKEIREAIERA----RLSKQAGRRT 116 Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N Q D ++ T L SR A V + Sbjct: 117 ILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSA---LLSR---ARVYLL 170 Query: 171 SLPDDDFLEKVIVKMF--ADRQIFIDKKLAAYIVQRM---------ERSLVFAEKLVDKM 219 + +E+V+ + ADR L +RM R+L E + D Sbjct: 171 KSLTTEDIEQVLDQAMQDADRGYGNSDILLPNNTRRMIAELVSGDARRALNTLEMMADMA 230 Query: 220 DNLALSRGMGITRSLAAEV 238 + A +T L EV Sbjct: 231 ETNA-QGKRELTPQLLTEV 248 >gi|312376781|gb|EFR23773.1| hypothetical protein AND_12269 [Anopheles darlingi] Length = 276 Score = 42.8 bits (100), Expect = 0.048, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + +++ST L + I ++ + Sbjct: 45 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRD 96 >gi|308162288|gb|EFO64695.1| AAA family ATPase [Giardia lamblia P15] Length = 870 Score = 42.8 bits (100), Expect = 0.048, Method: Composition-based stats. Identities = 13/32 (40%), Positives = 18/32 (56%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 PSR +L GP G+GKS LA +++ S Sbjct: 539 PSRGALLWGPPGTGKSLLAKAIANECGCNYIS 570 Score = 40.5 bits (94), Expect = 0.24, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 66/177 (37%), Gaps = 46/177 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G GK+ + ++++ + F N+ K+ D + Sbjct: 252 PPRGILLTGPPGCGKTTIGKAIANEAGAYFFLLNGAEIMSSMAGESEKNLRKAFDICEQE 311 Query: 107 TRKP-----------VLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMT 143 K + +++ID + N QL +++ I + +++ Sbjct: 312 AEKSAKENDGVGCAILFIDEIDCIAGNRAESKGEVEKRVVSQLLTLMDGIKPRSNVIVLA 371 Query: 144 ARTFPVSWGVCLPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199 A P V P L R + ++I++PD++ +++ R++ + Sbjct: 372 ATNRP---NVIDPALR-RFGRFDREIQINVPDENGRLEIL--SIHTRKLKLHPDGVD 422 >gi|269468528|gb|EEZ80182.1| Holliday junction resolvasome, helicase subunit [uncultured SUP05 cluster bacterium] Length = 341 Score = 42.8 bits (100), Expect = 0.048, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 3/69 (4%) Query: 68 ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLF 127 ++ GP G GK+ LA++ + + + L+ LE D+L ++ Sbjct: 59 LIYGPPGLGKTTLAHVIAHQMGAGLKQTAGPVLERSGDLAAILTKLEPYDILFIDEI--- 115 Query: 128 HIINSIHQY 136 H +N + + Sbjct: 116 HRLNPVVEE 124 >gi|266621439|ref|ZP_06114374.1| replication-associated recombination protein A [Clostridium hathewayi DSM 13479] gi|288866879|gb|EFC99177.1| replication-associated recombination protein A [Clostridium hathewayi DSM 13479] Length = 444 Score = 42.8 bits (100), Expect = 0.048, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 62/174 (35%), Gaps = 28/174 (16%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD--FN 122 VI GP G+GK+ LA + ++ + + A ++ ++ E D L Sbjct: 53 GSVIFYGPPGTGKTTLAKVIANTTSADFKQINATVAGKKDMEE---IVKEARDSLGMFGR 109 Query: 123 DTQLF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 T LF H N + + L+ A T + V L SR + V ++ Sbjct: 110 KTILFVDEIHRFNKGQQDYLLPFVEDGTLTLIGATTENPYFEVNGA-LLSR---SRVFEL 165 Query: 171 SLPDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVD 217 + + + ++I + DR ID++ ++ A V+ Sbjct: 166 KPLEREDIRELIRRAVYDRDKGMGAYNAVIDEEAMNFLADVANGDARAALNAVE 219 >gi|253742222|gb|EES99067.1| AAA family ATPase [Giardia intestinalis ATCC 50581] Length = 870 Score = 42.8 bits (100), Expect = 0.048, Method: Composition-based stats. Identities = 13/32 (40%), Positives = 18/32 (56%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 PSR +L GP G+GKS LA +++ S Sbjct: 539 PSRGALLWGPPGTGKSLLAKAIANECGCNYIS 570 Score = 40.5 bits (94), Expect = 0.24, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 66/177 (37%), Gaps = 46/177 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G GK+ + ++++ + F N+ K+ D + Sbjct: 252 PPRGILLTGPPGCGKTTIGKAIANEAGAYFFLLNGAEIMSSMAGESEKNLRKAFDICEQE 311 Query: 107 TRKP-----------VLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMT 143 K + +++ID + N QL +++ I + +++ Sbjct: 312 AEKSAKENDGVGCAILFIDEIDCIAGNRAESKGEVEKRVVSQLLTLMDGIKPRSNVIVLA 371 Query: 144 ARTFPVSWGVCLPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199 A P V P L R + ++I++PD++ +++ R++ + Sbjct: 372 ATNRP---NVIDPALR-RFGRFDREIQINVPDENGRLEIL--SIHTRKLKLHPDGVD 422 >gi|225681655|gb|EEH19939.1| 26S protease regulatory subunit 6A [Paracoccidioides brasiliensis Pb03] Length = 428 Score = 42.8 bits (100), Expect = 0.048, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 54/160 (33%), Gaps = 38/160 (23%) Query: 70 VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113 GP G+GK+ LA + ++ +T L + I ++ + Sbjct: 214 YGPPGTGKTLLARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPSIIFI 273 Query: 114 EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158 +++D + + ++N D ++ A L L Sbjct: 274 DELDAVGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRVKVLAATNRVDVLDPAL--L 331 Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 S RL ++ LP+++ +++ R++ +D + Sbjct: 332 RSGRLD--RKIEFPLPNEEARAQIL--RIHSRKMAVDDGV 367 >gi|159108838|ref|XP_001704687.1| AAA family ATPase [Giardia lamblia ATCC 50803] gi|157432757|gb|EDO77013.1| AAA family ATPase [Giardia lamblia ATCC 50803] Length = 870 Score = 42.8 bits (100), Expect = 0.048, Method: Composition-based stats. Identities = 13/32 (40%), Positives = 18/32 (56%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 PSR +L GP G+GKS LA +++ S Sbjct: 539 PSRGALLWGPPGTGKSLLAKAIANECGCNYIS 570 Score = 40.5 bits (94), Expect = 0.24, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 66/177 (37%), Gaps = 46/177 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G GK+ + ++++ + F N+ K+ D + Sbjct: 252 PPRGILLTGPPGCGKTTIGKAIANEAGAYFFLLNGAEIMSSMAGESEKNLRKAFDICEQE 311 Query: 107 TRKP-----------VLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMT 143 K + +++ID + N QL +++ I + +++ Sbjct: 312 AEKSAKENDGVGCAILFIDEIDCIAGNRAESKGEVEKRVVSQLLTLMDGIKPRSNVIVLA 371 Query: 144 ARTFPVSWGVCLPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199 A P V P L R + ++I++PD++ +++ R++ + Sbjct: 372 ATNRP---NVIDPALR-RFGRFDREIQINVPDENGRLEIL--SIHTRKLKLHPDGVD 422 >gi|323486280|ref|ZP_08091606.1| hypothetical protein HMPREF9474_03357 [Clostridium symbiosum WAL-14163] gi|323693929|ref|ZP_08108116.1| replication-associated recombination protein A [Clostridium symbiosum WAL-14673] gi|323400390|gb|EGA92762.1| hypothetical protein HMPREF9474_03357 [Clostridium symbiosum WAL-14163] gi|323502026|gb|EGB17901.1| replication-associated recombination protein A [Clostridium symbiosum WAL-14673] Length = 440 Score = 42.4 bits (99), Expect = 0.048, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 64/174 (36%), Gaps = 28/174 (16%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD--FN 122 +I GP G+GK+ LA + + + + RF + ++ + V+ E D L Sbjct: 53 GSIIFYGPPGTGKTTLAKVIAGTTSA-RFKQLNATVAGK--KDMEEVVQEAKDALGMYGQ 109 Query: 123 DTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 T LF H N + + LL+ A T + V L SR + + ++ Sbjct: 110 KTILFVDEIHRFNKSQQDYLLPFVEDGTLLLIGATTENPYFEVNGA-LISR---SRIFEL 165 Query: 171 SLPDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVD 217 + + +++ + D+ + I ++ ++ A V+ Sbjct: 166 KPLAKEDVAELLRRAVYDKEKGMGSYKADISEEAVDFLADMAGGDARAALNAVE 219 >gi|319405871|emb|CBI79503.1| ATPase, AAA family [Bartonella sp. AR 15-3] Length = 439 Score = 42.4 bits (99), Expect = 0.048, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 68/182 (37%), Gaps = 28/182 (15%) Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDID 117 S +I GP G+GK+ +A + + ++ + S I + + +K + Sbjct: 50 ASGSFSSMIFWGPPGTGKTTIARLLALETNFAFEQVSAIFTGISEL----KKIFEVARAR 105 Query: 118 LLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLK 163 L+ T LF H N + + +L+ T L SR++ Sbjct: 106 LMSGCQTLLFIDEIHRFNRAQQDSFLSFMEDGTIILVGATTENPSFELNAA---LLSRVR 162 Query: 164 AATVVKISLPDDDFLEKVIVK--MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 ++ D++ LE ++ + R + +D + +++ + A L +++ Sbjct: 163 ---ILTFHTHDNESLEILLKRAEKMEGRALPLDDQAREILIRMSDGDARAALTLAEEIWR 219 Query: 222 LA 223 +A Sbjct: 220 VA 221 >gi|295659984|ref|XP_002790549.1| vacuolar protein sorting-associated protein [Paracoccidioides brasiliensis Pb01] gi|226281424|gb|EEH36990.1| vacuolar protein sorting-associated protein [Paracoccidioides brasiliensis Pb01] Length = 433 Score = 42.4 bits (99), Expect = 0.048, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 14/80 (17%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + ++L GP G+GKS LA + ++ ST FS + L S + + ++ Sbjct: 163 PWKAILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESERLV---------- 212 Query: 123 DTQLFHIINSIHQYDSSLLM 142 QLF N + +++ Sbjct: 213 -KQLF---NMARENRPAIIF 228 >gi|255283517|ref|ZP_05348072.1| replication-associated recombination protein A [Bryantella formatexigens DSM 14469] gi|255265974|gb|EET59179.1| replication-associated recombination protein A [Bryantella formatexigens DSM 14469] Length = 468 Score = 42.4 bits (99), Expect = 0.048, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 54/144 (37%), Gaps = 20/144 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS-------------NIAKSLDSILIDTRKPVLL 113 +I GP G GK+ LA I + +++ + + ++ +S + R + + Sbjct: 75 MIFWGPPGVGKTTLAGIIAAHTKAEFINFSAVTSGIKEIKEVMQQAENSRRMGRRTVLFV 134 Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 ++I + F + S +L+ A T S+ V L SR V + Sbjct: 135 DEIHRFNKAQQDAFLPF---VEKGSIILIGATTENPSFEVNAA-LLSR---CRVFVLKAL 187 Query: 174 DDDFLEKVIVKMFADRQIFIDKKL 197 ++ L +V+ F+ + Sbjct: 188 EEKDLVRVLENALTSPSGFLHSHV 211 >gi|114605198|ref|XP_518204.2| PREDICTED: Werner helicase interacting protein isoform 4 [Pan troglodytes] Length = 576 Score = 42.4 bits (99), Expect = 0.048, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 16/83 (19%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA+I + S+ + S + + + D+ N+ Sbjct: 262 PSLILWGPPGCGKTTLAHIIASNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 316 Query: 125 QLF-----------HIINSIHQY 136 F H N Q Sbjct: 317 SFFKRKTILFIDEIHRFNKSQQD 339 >gi|308512763|gb|ADO33035.1| proteasome 26S subunit 6A [Biston betularia] Length = 428 Score = 42.4 bits (99), Expect = 0.048, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + +++ST L + I ++ + Sbjct: 208 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRD 259 >gi|224137776|ref|XP_002326437.1| predicted protein [Populus trichocarpa] gi|222833759|gb|EEE72236.1| predicted protein [Populus trichocarpa] Length = 428 Score = 42.4 bits (99), Expect = 0.048, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 49/154 (31%), Gaps = 49/154 (31%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P V+ GP G+GK+ LA ++++ + I L + ++ Sbjct: 204 PKGVLC-YGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSK 262 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQYDSS----LLMTARTF--- 147 ++ID + + I+N + +D+ +LM Sbjct: 263 KACIVFFDEIDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 322 Query: 148 -PVSW---------GVCLPDLCSRLKAATVVKIS 171 P LPDL SR A + KI Sbjct: 323 DPALLRPGRLDRKVEFGLPDLESR---AQIFKIH 353 >gi|110669001|ref|YP_658812.1| proteasome-activating nucleotidase [Haloquadratum walsbyi DSM 16790] gi|109626748|emb|CAJ53215.1| proteasome-activating nucleotidase 1 [Haloquadratum walsbyi DSM 16790] Length = 410 Score = 42.4 bits (99), Expect = 0.048, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 28/64 (43%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P V+L GP G+GK+ LA ++++ +T L I ++ + DL Sbjct: 185 PPSGVLLHGPPGTGKTMLAKAVANETDATFIKMAGSELVRKFIGEGSRLVRDLFDLAAER 244 Query: 123 DTQL 126 + + Sbjct: 245 EPAV 248 >gi|296109413|ref|YP_003616362.1| 26S proteasome subunit P45 family [Methanocaldococcus infernus ME] gi|295434227|gb|ADG13398.1| 26S proteasome subunit P45 family [Methanocaldococcus infernus ME] Length = 421 Score = 42.4 bits (99), Expect = 0.049, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + ++ +T + L I ++ + Sbjct: 196 PPKGVLLYGPPGTGKTLLAKAVARETNATFIRVVGSELVKKFIGEGASLVKD 247 >gi|14349164|dbj|BAB60708.1| Werner helicase interacting protein [Mus musculus] Length = 660 Score = 42.4 bits (99), Expect = 0.049, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 16/83 (19%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA+I ++ S+ + S + + + D+ N+ Sbjct: 257 PSLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 311 Query: 125 QLF-----------HIINSIHQY 136 F H N Q Sbjct: 312 SFFKRKTILFIDEIHRFNKSQQD 334 >gi|161898988|ref|YP_201181.2| recombination factor protein RarA [Xanthomonas oryzae pv. oryzae KACC10331] gi|162319801|ref|YP_451430.2| recombination factor protein RarA [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188576725|ref|YP_001913654.1| recombination factor protein RarA [Xanthomonas oryzae pv. oryzae PXO99A] gi|188576916|ref|YP_001913845.1| recombination factor protein RarA [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521177|gb|ACD59122.1| ATPase [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521368|gb|ACD59313.1| ATPase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 458 Score = 42.4 bits (99), Expect = 0.049, Method: Composition-based stats. Identities = 37/200 (18%), Positives = 66/200 (33%), Gaps = 31/200 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA + + + + F+ I+ L + + VL E + Sbjct: 62 MILWGPPGCGKTTLALLLAHYADAE-FNAISAVLSG--LPEVRQVLAEAAQRFAGGRRTV 118 Query: 127 F-----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKIS 171 H N Q ++L T L SR + + +S Sbjct: 119 LFVDEVHRFNKAQQDAFLPHIERGTILFVGATTENPSFELNSA---LLSRCRVHVLEGVS 175 Query: 172 LPD--DDFLEKVIVKMFADRQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 D + + A+R + + + I + + A L++ LA Sbjct: 176 PQDIVEALQRAL---HDAERGLGQQTIQVSEASLLEIASAADGDVRRALTLLEIAAELAT 232 Query: 225 SRGMGITRSLAAEVLKETQQ 244 G IT +VL + + Sbjct: 233 GEGGEITPRTLLQVLADRTR 252 >gi|92116765|ref|YP_576494.1| IstB-like ATP-binding protein [Nitrobacter hamburgensis X14] gi|91799659|gb|ABE62034.1| IstB-like ATP-binding protein [Nitrobacter hamburgensis X14] Length = 287 Score = 42.4 bits (99), Expect = 0.049, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 46/110 (41%), Gaps = 22/110 (20%) Query: 64 SRVVILVGPSGSGKSCLANIWS-------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 R +LVG +G+GK+ LA + + R ++ L+ + R+ + E + Sbjct: 98 QRNAVLVGGAGTGKTHLAIAIARSCIRSGARGRFYNVVDLVNRLEIETRNGRQGRIAEHL 157 Query: 117 ---DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 D + ++ LFH+++ +++ +S+++T W Sbjct: 158 TRMDFIVLDELGYLPFAQSGGQLLFHLVSRLYER-TSIVVTTNLAFGEWP 206 >gi|323139555|ref|ZP_08074600.1| ATP-dependent metalloprotease FtsH [Methylocystis sp. ATCC 49242] gi|322395174|gb|EFX97730.1| ATP-dependent metalloprotease FtsH [Methylocystis sp. ATCC 49242] Length = 662 Score = 42.4 bits (99), Expect = 0.050, Method: Composition-based stats. Identities = 33/213 (15%), Positives = 74/213 (34%), Gaps = 43/213 (20%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110 R V+LVGP G+GK+ LA + ++ FS + + Sbjct: 193 RGVLLVGPPGTGKTLLARAIAGEAGVPFFSISGSDFVEMFVGVGASRVRDMFEQAKKNAP 252 Query: 111 --VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGV 153 + +++ID + D + L + ++ + +L+ A P Sbjct: 253 CIIFVDEIDAVGRHRGAGLGGGNDEREQTLNQLLVEMDGFEANEGIILIAATNRPDVLDP 312 Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L ++ +++ PD EK++ R++ + + +V R Sbjct: 313 AL------MRPGRFDRQIQVPNPDFIGREKILKVHA--RKVPLAPDVDLKVVARGTPGFS 364 Query: 211 FAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 A L++ ++ AL R + + ++ + Sbjct: 365 GA-DLMNLVNEAALLAARRSKRIVTNQEFEDAR 396 >gi|226469024|emb|CAX69991.1| proteasome (prosome, macropain) 26S subunit, ATPase, 3 [Schistosoma japonicum] Length = 428 Score = 42.4 bits (99), Expect = 0.050, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 69/184 (37%), Gaps = 40/184 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID---------------- 106 P + V+L GP G+GK+ LA + +++ST L + I Sbjct: 208 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLFRDAFQLAKEK 267 Query: 107 TRKPVLLEDIDLL---------DFN---DTQLFHIINSIH--QYDSSLLMTARTFPVSWG 152 + ++++D + + + ++N + Q + + + A T Sbjct: 268 APAIIFIDELDAIGTKRFNSEKAGDREVQRTMLELLNQLDGFQPNHDIKVIAAT--NRVD 325 Query: 153 VCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL 209 + P L L++ V ++ P+++ +++ R++ +DK + + R Sbjct: 326 ILDPAL---LRSGRVDRKIEFPAPNEEARARIMQ--IHSRKMNVDKDVNFEELARCTDDF 380 Query: 210 VFAE 213 A+ Sbjct: 381 NGAQ 384 >gi|119719589|ref|YP_920084.1| AAA family ATPase, CDC48 subfamily protein [Thermofilum pendens Hrk 5] gi|119524709|gb|ABL78081.1| AAA family ATPase, CDC48 subfamily [Thermofilum pendens Hrk 5] Length = 718 Score = 42.4 bits (99), Expect = 0.050, Method: Composition-based stats. Identities = 23/168 (13%), Positives = 57/168 (33%), Gaps = 43/168 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106 P + V+ GP G+GK+ LA ++++ + + + + + + Sbjct: 213 PPKGVLFYGPPGTGKTLLAKAVANETGAYFIAINGPEIMSKFYGESEQRLREIFEEATKN 272 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + + +++ A P Sbjct: 273 APAIIFIDEIDAIAPKREEVTGEVEKRVVAQLLALMDGLKERGQVIVIAATNRPDDIDPA 332 Query: 155 LP-----DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L D R A V PD +++ R + + + + Sbjct: 333 LRRPGRFD---REIAFPV-----PDKRARREILQVH--TRNMPLAEDV 370 Score = 37.8 bits (87), Expect = 1.4, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 18/31 (58%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF 93 P + ++L GP G+GK+ LA + +S + Sbjct: 486 PPKGILLYGPPGTGKTLLAKAVATESEANFI 516 >gi|150019877|ref|YP_001312131.1| DNA replication protein DnaC [Clostridium beijerinckii NCIMB 8052] gi|149906342|gb|ABR37175.1| DNA replication protein DnaC, putative [Clostridium beijerinckii NCIMB 8052] Length = 326 Score = 42.4 bits (99), Expect = 0.050, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 45/117 (38%), Gaps = 21/117 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI-----------------LIDTRK 109 ++ G GSGK+ L+ + F I K+ D + L+ Sbjct: 186 LLFYGNPGSGKTYLSYCIAKSVLDMGFLVIYKTSDELIKNLREIRFNNDSGLESLLLECD 245 Query: 110 PVLLEDIDLLDFND---TQLFHIIN-SIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 ++++D+ N+ T+LF+IIN I L+ T T P + SRL Sbjct: 246 LLIVDDLGAEHLNEFSVTELFNIINKRILANKKMLISTNLTLPGITKQYSERIASRL 302 >gi|317486968|ref|ZP_07945778.1| ATPase [Bilophila wadsworthia 3_1_6] gi|316921843|gb|EFV43119.1| ATPase [Bilophila wadsworthia 3_1_6] Length = 407 Score = 42.4 bits (99), Expect = 0.050, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 64/178 (35%), Gaps = 12/178 (6%) Query: 28 LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87 L P L S L V + A RL ++L GP G GKS LA + + Sbjct: 3 LSQPLPERLRPSELALFVGQS-HLAERLTTLLEGPRLPSLLLFGPPGCGKSTLALLLARA 61 Query: 88 SRS--TRFSNIAKSLDSIL--IDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMT 143 R S L + + ++L+++ F + + ++ Sbjct: 62 RGGNVLRLSAPEAGLQQLRRQLTGVDILVLDELHRFSKAQQDFFLP---LLESGDLTMIA 118 Query: 144 ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 T S+ V L SRL + ++ P+ L ++ + A + ++ ++ ++ Sbjct: 119 TTTENPSFSVTRQ-LLSRLHVLRLRQLGRPE---LLELGKRGAAALSVTLNDEILDFL 172 >gi|308061773|gb|ADO03661.1| recombination factor protein RarA [Helicobacter pylori Cuz20] Length = 391 Score = 42.4 bits (99), Expect = 0.050, Method: Composition-based stats. Identities = 32/189 (16%), Positives = 70/189 (37%), Gaps = 25/189 (13%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILI--------DTRKPVLLE 114 GP G GK+ LA I + F+ L+ + + + V ++ Sbjct: 38 PHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRLKLKNYQNTLLKPVVFID 97 Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 + L+ + I + D +L++ A T ++ + + SR + + +++ + Sbjct: 98 ETHRLNKTQQEFLLPI---MEKDHALILGASTQDPNYSLSHA-IRSR---SFIFELTPLN 150 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234 L+K+ K + I+ Y++ S A L++ +D A I + Sbjct: 151 KSDLDKLCTKALTLLKKQIEPSAKTYLLNN---SAGDARALLNLLDLSA-----KIEDPI 202 Query: 235 AAEVLKETQ 243 E L+ + Sbjct: 203 TLETLQSLR 211 >gi|297289911|ref|XP_002803619.1| PREDICTED: ATPase WRNIP1 [Macaca mulatta] Length = 619 Score = 42.4 bits (99), Expect = 0.050, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 16/83 (19%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA+I ++ S+ + S + + + D+ N+ Sbjct: 262 PSLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 316 Query: 125 QLF-----------HIINSIHQY 136 F H N Q Sbjct: 317 SFFKRKTILFIDEIHRFNKSQQD 339 >gi|253583196|ref|ZP_04860394.1| holliday junction DNA helicase ruvB [Fusobacterium varium ATCC 27725] gi|251833768|gb|EES62331.1| holliday junction DNA helicase ruvB [Fusobacterium varium ATCC 27725] Length = 340 Score = 42.4 bits (99), Expect = 0.050, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 3/70 (4%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G GK+ LA + + + + L+ LE+ D+L ++ Sbjct: 55 ILLYGPPGLGKTTLAGVIATEMGANLKITSGPVLERAGDLAAILTSLEENDILFIDEI-- 112 Query: 127 FHIINSIHQY 136 H +N+ + Sbjct: 113 -HRLNNTVEE 121 >gi|226293608|gb|EEH49028.1| vacuolar protein sorting-associated protein [Paracoccidioides brasiliensis Pb18] Length = 434 Score = 42.4 bits (99), Expect = 0.050, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 14/80 (17%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + ++L GP G+GKS LA + ++ ST FS + L S + + ++ Sbjct: 164 PWKAILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESERLV---------- 213 Query: 123 DTQLFHIINSIHQYDSSLLM 142 QLF N + +++ Sbjct: 214 -KQLF---NMARENRPAIIF 229 >gi|162149341|ref|YP_001603802.1| transposase [Gluconacetobacter diazotrophicus PAl 5] gi|161787918|emb|CAP57517.1| transposase [Gluconacetobacter diazotrophicus PAl 5] Length = 212 Score = 42.4 bits (99), Expect = 0.050, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 58/145 (40%), Gaps = 26/145 (17%) Query: 32 FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--VILVGPSGSGKSCLANIWSDKS- 88 FP ++ D E VR + + R V+L+G G+GK+ LA + ++ Sbjct: 22 FPAYKDLAGFDFSAAEVNEAMVRQL-HAGDFIDRADNVVLIGGPGTGKTHLATALAVQAI 80 Query: 89 -------RSTRFSNIAKSLDSILIDTRKPVLLE---DIDLLDFND-----------TQLF 127 R ++ +L+ R + E +DL+ ++ LF Sbjct: 81 EHHRKKIRFWSTVDLVNALEQEKTANRAGQIAERLLRLDLVILDELGYLPFSASGGALLF 140 Query: 128 HIINSIHQYDSSLLMTARTFPVSWG 152 H+++ +++ +S+++T WG Sbjct: 141 HLLSRLYER-TSVIITTNLSFSEWG 164 >gi|73748992|ref|YP_308231.1| recombination factor protein RarA [Dehalococcoides sp. CBDB1] gi|73660708|emb|CAI83315.1| ATPase, AAA family [Dehalococcoides sp. CBDB1] Length = 457 Score = 42.4 bits (99), Expect = 0.050, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 52/137 (37%), Gaps = 21/137 (15%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF--N 122 +I GP GSGK+ LANI + + A S S + + V+ E + L Sbjct: 58 PSLIFWGPPGSGKTTLANIIAHSLDAHF---SALSAVSAGVADLRRVVEEARERLKLYHR 114 Query: 123 DTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 T LF H N + + +L+ A T S+ V L SR A V + Sbjct: 115 RTILFIDEIHRFNKSQQDAILPYVEDGTVVLIGATTENPSFEVNSA-LLSR---AQVYVL 170 Query: 171 SLPDDDFLEKVIVKMFA 187 + + + ++ + Sbjct: 171 NSLSEKEISVILKRSLE 187 >gi|320159500|ref|YP_004172724.1| putative ATPase [Anaerolinea thermophila UNI-1] gi|319993353|dbj|BAJ62124.1| putative ATPase [Anaerolinea thermophila UNI-1] Length = 463 Score = 42.4 bits (99), Expect = 0.051, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 68/172 (39%), Gaps = 27/172 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G+GK+ LA + + +++ F I+ L + R E+ L T L Sbjct: 56 IILWGPPGTGKTTLAQLIAQYTQAH-FEVISAVLAGVPDLRRVIQEAEERRKLYRRRTIL 114 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N + L+ A T + V L SR + + ++ + Sbjct: 115 FVDEVHRWNKAQQDALLPHVESGMITLVGATTENPYFEVISA-LVSR---SRIFQLLPLE 170 Query: 175 DDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 + L + + +D R + +D + A++++ S A L++ + Sbjct: 171 EHHLSILFDRALSDPERGYGKISVQVDPEARAHLIRV---SGGDARNLLNAL 219 >gi|312381272|gb|EFR27057.1| hypothetical protein AND_06456 [Anopheles darlingi] Length = 848 Score = 42.4 bits (99), Expect = 0.051, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 24/58 (41%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120 P R +L GP GSGK+ LA + + + A L + L + + E + Sbjct: 313 PPRGFLLHGPPGSGKTLLAQAIAGQLKIELIEVPATELVASLSGESEERIREVFEQAA 370 Score = 37.4 bits (86), Expect = 1.8, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 PS V+ L GP G GK+ LA ++++ S L Sbjct: 797 PSGVL-LCGPPGCGKTLLAKAVANEAGINFISVKGPEL 833 >gi|255280597|ref|ZP_05345152.1| cell division protein FtsH [Bryantella formatexigens DSM 14469] gi|255269062|gb|EET62267.1| cell division protein FtsH [Bryantella formatexigens DSM 14469] Length = 609 Score = 42.4 bits (99), Expect = 0.051, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 65/200 (32%), Gaps = 50/200 (25%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 ++LVGP G+GK+ LA + ++ FS + + Sbjct: 201 LLLVGPPGTGKTMLAKAVAGEANVPFFSISGSEFVEMFVGMGASKVRDLFKQAKEKAPCI 260 Query: 111 VLLEDIDLL--------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW----- 151 V +++ID + ND QL ++ + +++ A P S Sbjct: 261 VFIDEIDAIGKKRDGQLGGNDEREQTLNQLLTEMDGFEGNNGVIILAATNRPESLDPALT 320 Query: 152 ---------GVCLPDLCSR--LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 V LPDL R + KI L DD + + + Sbjct: 321 RPGRFDRRVPVELPDLKGREEILKVHAKKIKLADDVDFHTIARMASGASGAELANIVNEA 380 Query: 201 IVQRMERSLVFAEKLVDKMD 220 + R++ K+V++ D Sbjct: 381 AL----RAVRSGRKVVNQSD 396 >gi|294654757|ref|XP_456823.2| DEHA2A11286p [Debaryomyces hansenii CBS767] gi|199429126|emb|CAG84798.2| DEHA2A11286p [Debaryomyces hansenii] Length = 792 Score = 42.4 bits (99), Expect = 0.051, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 58/153 (37%), Gaps = 32/153 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTR-- 108 P R ++L GP G+GK+ L ++++ + + ++ I + R Sbjct: 292 PPRGILLHGPPGTGKTMLLRCVANETNAHVLTVNGPSIVSKYLGETENAIRDIFEEARKF 351 Query: 109 --KPVLLEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 + L++ID L N L +++ + +++ A P S Sbjct: 352 QPSIIFLDEIDSLAPNRNSDDSGETESRVVATLLTMMDGMGDTGRIVVVGATNRPNSID- 410 Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 P L + V+I +PD + +++K F Sbjct: 411 --PALRRPGRFDQEVEIGIPDVEARGDILIKQF 441 >gi|109069429|ref|XP_001090565.1| PREDICTED: ATPase WRNIP1 isoform 2 [Macaca mulatta] Length = 614 Score = 42.4 bits (99), Expect = 0.051, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 16/83 (19%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA+I ++ S+ + S + + + D+ N+ Sbjct: 262 PSLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 316 Query: 125 QLF-----------HIINSIHQY 136 F H N Q Sbjct: 317 SFFKRKTILFIDEIHRFNKSQQD 339 >gi|47523346|ref|NP_998914.1| spastin [Sus scrofa] gi|33332017|gb|AAQ11224.1| spastin [Sus scrofa] Length = 530 Score = 42.4 bits (99), Expect = 0.051, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 30/50 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S +T F+ A SL S + + ++ Sbjct: 288 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 337 >gi|307314388|ref|ZP_07593994.1| AAA ATPase central domain protein [Sinorhizobium meliloti BL225C] gi|306899086|gb|EFN29728.1| AAA ATPase central domain protein [Sinorhizobium meliloti BL225C] Length = 436 Score = 42.4 bits (99), Expect = 0.051, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 62/182 (34%), Gaps = 28/182 (15%) Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDID 117 S +I GP G+GK+ +A + S ++ + S I + + Sbjct: 49 ASGSLGSMIFWGPPGTGKTTVARLLSGEAGLAFEQISAIFSGVADLKKVFESA----RAR 104 Query: 118 LLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLK 163 + T LF H N + + +L+ T L SR Sbjct: 105 RMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVILVGATTENPSFELNAA---LLSR-- 159 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 A V+ D+ LE+++ + A + +D + A +++ + L +++ Sbjct: 160 -ARVLTFKPHDEASLEELLKRAEAAEGKPLPLDDEARASLIRMADGDGRAVLTLAEEVWR 218 Query: 222 LA 223 A Sbjct: 219 AA 220 >gi|89097402|ref|ZP_01170291.1| ATP-dependent metalloprotease FtsH [Bacillus sp. NRRL B-14911] gi|89087698|gb|EAR66810.1| ATP-dependent metalloprotease FtsH [Bacillus sp. NRRL B-14911] Length = 579 Score = 42.4 bits (99), Expect = 0.051, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 16/75 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110 P + ++L GP G+GK+ LA + + ++ FS S + + + Sbjct: 185 PPKGILLYGPPGTGKTLLAQAIAKEIGASFFSTSGSSFNEMFVGVGASRVRSLFQNARKH 244 Query: 111 ----VLLEDIDLLDF 121 V ++++D L Sbjct: 245 SPAVVFIDEVDALAG 259 >gi|307175886|gb|EFN65701.1| 26S protease regulatory subunit 4 [Camponotus floridanus] Length = 440 Score = 42.4 bits (99), Expect = 0.051, Method: Composition-based stats. Identities = 31/206 (15%), Positives = 69/206 (33%), Gaps = 45/206 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + VIL GP G+GK+ LA ++++ +T + L + ++ Sbjct: 218 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEH 277 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTART---- 146 +++ID + + ++N + + D ++M Sbjct: 278 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVVMATNRIETL 337 Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206 P D ++ LPD+ ++ + + D LA I+ + + Sbjct: 338 DPALIRPGRIDRK--------IEFPLPDEKTKRRIFNIHTSRMTLAPDVNLAELIMAKDD 389 Query: 207 RSLVFAEKLVDKMDNLALSRGM-GIT 231 S + + + +AL +T Sbjct: 390 LSGADIKAICTEAGLMALRERRMKVT 415 >gi|302817378|ref|XP_002990365.1| hypothetical protein SELMODRAFT_131462 [Selaginella moellendorffii] gi|300141927|gb|EFJ08634.1| hypothetical protein SELMODRAFT_131462 [Selaginella moellendorffii] Length = 489 Score = 42.4 bits (99), Expect = 0.051, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 64/159 (40%), Gaps = 43/159 (27%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI--------------LIDTR 108 P R ++L GP G+GK+ +A + ++ +T + ++ S+ L + Sbjct: 250 PCRGMLLFGPPGTGKTHIAKAIASEANTTFIGITSSTISSMWYGEAEKLAKAVFTLAEKL 309 Query: 109 KP--VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 P + ++++D + +L ++ +T+R+ + L ++ Sbjct: 310 APTIIFVDEVDSILGARGEL-------NED-----VTSRSVKNEFMTAWDGLRTK----- 352 Query: 167 VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 DD ++V+V +R +D+ + + +R+ Sbjct: 353 -------DD---KRVMVLAATNRPFDLDEAVIRRLPRRI 381 >gi|296224141|ref|XP_002757919.1| PREDICTED: spastin isoform 1 [Callithrix jacchus] Length = 616 Score = 42.4 bits (99), Expect = 0.051, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 30/50 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S +T F+ A SL S + + ++ Sbjct: 374 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 423 >gi|188534279|ref|YP_001908076.1| recombination factor protein RarA [Erwinia tasmaniensis Et1/99] gi|188029321|emb|CAO97198.1| Putative polynucleotide ATPase protein [Erwinia tasmaniensis Et1/99] Length = 447 Score = 42.4 bits (99), Expect = 0.051, Method: Composition-based stats. Identities = 39/201 (19%), Positives = 64/201 (31%), Gaps = 42/201 (20%) Query: 67 VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G+GK+ LA I ++ R S + + I + + T Sbjct: 53 MILWGPPGTGKTTLAEIIGHYGQADVERISAVTSGIKDIREAIERA----RQNRHAGRRT 108 Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N Q D ++ T L SR A V + Sbjct: 109 ILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSA---LLSR---ARVYLL 162 Query: 171 SLPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 D + V+ + D R I + I Q + A + ++ ++ +A Sbjct: 163 KSLTDKDISAVLDQAMQDSERGYGKDNIVLPDNTRDMIAQLVN---GDARRALNTLEMMA 219 Query: 224 LSR------GMGITRSLAAEV 238 +T +L EV Sbjct: 220 DMAEVNGKGKRELTSTLLNEV 240 >gi|108761837|ref|YP_631057.1| recombination factor protein RarA [Myxococcus xanthus DK 1622] gi|108465717|gb|ABF90902.1| ATPase, AAA family [Myxococcus xanthus DK 1622] Length = 444 Score = 42.4 bits (99), Expect = 0.051, Method: Composition-based stats. Identities = 33/195 (16%), Positives = 69/195 (35%), Gaps = 37/195 (18%) Query: 70 VGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDT---------RKPVLLED 115 GP G GK+ LA + + + S+ + ++ + R + +++ Sbjct: 60 WGPPGVGKTTLARMMATGVDAEFVILSAVSDGIPRIREVVAEAERLRNQYSRRTVLFVDE 119 Query: 116 IDLLDFN--DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 I N + L H+ + +L+ A T VS+ V P L SR V ++ Sbjct: 120 IHRWAKNVQEQALPHV-----ESGLFVLLGATTENVSFEVR-PALVSR---CRVFQLKEL 170 Query: 174 DDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA--L 224 ++ + + D R + + + + + + K + ++ A Sbjct: 171 TVADIQSALTRALGDSKRGLGARNLSVGEGALTLLAKGG---VGDVRKALGALELAASLT 227 Query: 225 SRGMGITRSLAAEVL 239 + G IT A E + Sbjct: 228 ADGAEITPETAREAV 242 >gi|9651739|gb|AAF91246.1|AF227502_1 proteasome regulatory ATPase subunit 4 [Trypanosoma brucei] gi|261332358|emb|CBH15353.1| Tbgamb.27571 protease regulatory ATPase subunit,putative [Trypanosoma brucei gambiense DAL972] Length = 399 Score = 42.4 bits (99), Expect = 0.051, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 54/158 (34%), Gaps = 39/158 (24%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V+L GP G+GK+ LA + + +A S+ I VL Sbjct: 176 PPKGVLLYGPPGTGKTLLAKAIASNVDAAFLKIVASSIVDKYIGESARVLREMFAFARDH 235 Query: 113 ------LEDIDLLDFNDT--------------QLFHIINSIHQYDSSLLMTARTFPVSWG 152 ++++D + +L H ++ + ++ A P + Sbjct: 236 EPCIIFIDEVDAIGGKRIEGSSSDREVQRTLMELLHQMDGFEKLGKVKVIMATNRPDTLD 295 Query: 153 VCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFA 187 L ++ + ++I LP++ V+ + Sbjct: 296 PAL------MRPGRLDRKIEIGLPNEAGRLDVLKIHAS 327 >gi|14714682|gb|AAH10482.1| Werner helicase interacting protein 1 [Mus musculus] Length = 660 Score = 42.4 bits (99), Expect = 0.051, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 16/83 (19%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA+I ++ S+ + S + + + D+ N+ Sbjct: 257 PSLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 311 Query: 125 QLF-----------HIINSIHQY 136 F H N Q Sbjct: 312 SFFKRKTILFIDEIHRFNKSQQD 334 >gi|254540120|ref|NP_084491.3| ATPase WRNIP1 [Mus musculus] gi|73622086|sp|Q91XU0|WRIP1_MOUSE RecName: Full=ATPase WRNIP1; AltName: Full=Werner helicase-interacting protein 1 gi|26334781|dbj|BAC31091.1| unnamed protein product [Mus musculus] gi|56206896|emb|CAI25647.1| Werner helicase interacting protein 1 [Mus musculus] gi|74195651|dbj|BAE39633.1| unnamed protein product [Mus musculus] gi|74215304|dbj|BAE41868.1| unnamed protein product [Mus musculus] gi|74221135|dbj|BAE42069.1| unnamed protein product [Mus musculus] gi|148700413|gb|EDL32360.1| Werner helicase interacting protein 1, isoform CRA_c [Mus musculus] Length = 660 Score = 42.4 bits (99), Expect = 0.051, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 16/83 (19%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA+I ++ S+ + S + + + D+ N+ Sbjct: 257 PSLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 311 Query: 125 QLF-----------HIINSIHQY 136 F H N Q Sbjct: 312 SFFKRKTILFIDEIHRFNKSQQD 334 >gi|323140178|ref|ZP_08075161.1| ATP-dependent metalloprotease FtsH [Methylocystis sp. ATCC 49242] gi|322394566|gb|EFX97184.1| ATP-dependent metalloprotease FtsH [Methylocystis sp. ATCC 49242] Length = 453 Score = 42.4 bits (99), Expect = 0.052, Method: Composition-based stats. Identities = 34/213 (15%), Positives = 75/213 (35%), Gaps = 43/213 (20%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110 R V+LVGP G+GK+ LA + ++ FS + + Sbjct: 193 RGVLLVGPPGTGKTLLARAIAGEAGVPFFSISGSHFVEMFVGVGASRVRDMFDQAKKNAP 252 Query: 111 --VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGV 153 V +++ID + D + L + ++ + +L+ A P Sbjct: 253 CIVFVDEIDAVGRHRGAGLGGGNDEREQTLNQLLVEMDGFEANEGIILIAATNRPDVLDP 312 Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L ++ +++ PD EK++ R++ + + +V R Sbjct: 313 AL------MRPGRFDRQIQVPNPDFIGREKILKVHA--RKVPLAPDVDLKVVARGTPGFS 364 Query: 211 FAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 A L++ ++ AL R + + ++++ Sbjct: 365 GA-DLMNLVNEAALLAARRSKRIVTNQEFEDSR 396 >gi|322370336|ref|ZP_08044895.1| cell division control protein 48 [Haladaptatus paucihalophilus DX253] gi|320550044|gb|EFW91699.1| cell division control protein 48 [Haladaptatus paucihalophilus DX253] Length = 713 Score = 42.4 bits (99), Expect = 0.052, Method: Composition-based stats. Identities = 35/207 (16%), Positives = 74/207 (35%), Gaps = 46/207 (22%) Query: 54 RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL------------- 100 L ++ + P V+L GP G+GK+ LA + +S S L Sbjct: 482 NLFEATRTEPPSGVLLYGPPGTGKTLLARALAGESDVNFVSVAGPELLDRYVGESEKSVR 541 Query: 101 ---DSILIDTRKPVLLEDIDLLDFND-----------TQLFHIINSIHQYDSSLLMTART 146 D + + ++ID L +QL ++ + + + +++ A Sbjct: 542 EVFDRARQASPAIIFFDEIDALASQRGESHEVTERVVSQLLTELDGLTENPNLVVLAATN 601 Query: 147 FPVSWGVCLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 + L L RL++ ++I P ++ K++ D+ + D L ++ + Sbjct: 602 RREAIDPAL--LRPGRLES--HIEIPAPGEEGRRKILSVHAGDKPLADDIDL-DWLATEL 656 Query: 206 E-----------R--SLVFAEKLVDKM 219 E R S+ + D++ Sbjct: 657 EGYTGADIEALVRAASMRAIREAADEL 683 >gi|224058199|ref|XP_002299463.1| predicted protein [Populus trichocarpa] gi|222846721|gb|EEE84268.1| predicted protein [Populus trichocarpa] Length = 932 Score = 42.4 bits (99), Expect = 0.052, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 34/100 (34%), Gaps = 21/100 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110 P V+L G G GK+ +A + ++ + +L+ Sbjct: 451 PPHGVLLEGAPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVN 510 Query: 111 ----VLLEDIDLLDFNDTQLF-----HIINSIHQYDSSLL 141 + +++ID L +F H+ N+ Q + L Sbjct: 511 KPSVIFIDEIDALATRRQGIFKESTDHLYNAATQERETTL 550 >gi|197304052|ref|ZP_03169081.1| hypothetical protein RUMLAC_02786 [Ruminococcus lactaris ATCC 29176] gi|197296877|gb|EDY31448.1| hypothetical protein RUMLAC_02786 [Ruminococcus lactaris ATCC 29176] Length = 443 Score = 42.4 bits (99), Expect = 0.052, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 62/155 (40%), Gaps = 24/155 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +I GP G+GK+ LA + ++ + + F I ++ +D+ + T L Sbjct: 60 LIFYGPPGTGKTTLAKVIANTTSAE-FKQINATVAGKKDMEEVVKAAKDLQGMYGKKTIL 118 Query: 127 F----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N + + +L+ A T + V L SR +++ ++ + Sbjct: 119 FIDEIHRFNKGQQDYLLPFVEDGTLILIGATTENPYFEVNGA-LISR---SSIFELKPLE 174 Query: 175 DDFLEKVIVKMFAD--RQI-----FIDKKLAAYIV 202 + ++K++V+ D + + ID ++ Sbjct: 175 KEDIKKLLVRAVEDTEKGMGSFHAQIDPDALEFLA 209 >gi|170593977|ref|XP_001901740.1| AAA ATPase [Brugia malayi] gi|158590684|gb|EDP29299.1| AAA ATPase, putative [Brugia malayi] Length = 353 Score = 42.4 bits (99), Expect = 0.052, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 49/140 (35%), Gaps = 41/140 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL------------DSILIDTRK- 109 P + V+L GP G GK+ LA + + + + + SL D++ +K Sbjct: 121 PPKGVLLYGPPGCGKTLLAKVIARAANARFINLQVSSLCDKWYGESQKLADAVFSVAQKF 180 Query: 110 ---PVLLEDIDLLDFNDTQLFH------------IINSIHQYDSSLLMTA---------- 144 + +++ID + H + + D ++++ Sbjct: 181 QPTIIFIDEIDSFLRDRNTQDHEATAMMKAQFMCLWDGFASSDDAIVVLGATNRPNDVDS 240 Query: 145 ---RTFPVSWGVCLPDLCSR 161 R P + V LP L SR Sbjct: 241 AILRRMPARFYVPLPSLESR 260 >gi|270307903|ref|YP_003329961.1| DNA replication protein [Dehalococcoides sp. VS] gi|270153795|gb|ACZ61633.1| DNA replication protein [Dehalococcoides sp. VS] Length = 470 Score = 42.4 bits (99), Expect = 0.052, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 13/71 (18%) Query: 46 HSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI 105 A A+ W ++ GPSG+GK+ LA ++K S+ ++ Sbjct: 110 SQAYNAALDFASKPAGW----LVFSGPSGAGKTHLAAAIANK---------RLSMGQPVL 156 Query: 106 DTRKPVLLEDI 116 R L++D+ Sbjct: 157 YKRASELIDDL 167 Score = 42.1 bits (98), Expect = 0.064, Method: Composition-based stats. Identities = 23/151 (15%), Positives = 51/151 (33%), Gaps = 30/151 (19%) Query: 51 QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------ 104 A L + P ++ G +G GK+ LA+ ++ + + L Sbjct: 298 AAYNLALEFSRNPESWLVFQGETGCGKTHLASAIVNERYRQGKPAMFVVVPEFLDHLRST 357 Query: 105 ---------------IDTRKPVLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTART 146 + K ++L+D + +L+ +IN + + ++T R Sbjct: 358 FSPESKTSYDQMFDAVKNAKLLVLDDFGEQSSTPWAQEKLYQVINYRYNRRLATVITTRC 417 Query: 147 FPVSWGVCLPDLCSRL---KAATVVKISLPD 174 + + SR + + V I+ P+ Sbjct: 418 QLSEIEIAI---SSRFVDPQISMVFNITAPN 445 >gi|307354221|ref|YP_003895272.1| 26S proteasome subunit P45 family [Methanoplanus petrolearius DSM 11571] gi|307157454|gb|ADN36834.1| 26S proteasome subunit P45 family [Methanoplanus petrolearius DSM 11571] Length = 411 Score = 42.4 bits (99), Expect = 0.052, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + V+L GP G+GK+ LA + ++ + + L I ++ E + N Sbjct: 185 PPKGVLLYGPPGTGKTLLARAVAHETNAKFLRVVGSELVQKYIGEGARLVRELFEHAKMN 244 >gi|167580959|ref|ZP_02373833.1| recombination factor protein RarA [Burkholderia thailandensis TXDOH] Length = 436 Score = 42.4 bits (99), Expect = 0.052, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 61/173 (35%), Gaps = 28/173 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA + + + A I + ++ + T L Sbjct: 50 MILWGPPGVGKTTLARLTALAFDCEFIALSAVLGGVKDIREAMEQARDTLNRTGRH-TIL 108 Query: 127 F----HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 F H N Q +LL + A T S+ V L SR A V + Sbjct: 109 FVDEIHRFNKAQQD--ALLPFVESGLVTFIGATTENPSFEVNSA-LLSR---AQVYVLKS 162 Query: 173 PDDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 +D L +++ K D + D K +V + A + ++ ++ Sbjct: 163 LTEDELRQLL-KRAQDTALDGLAFDDKAVDTLVGYAD---GDARRFLNLLEQA 211 >gi|148508161|gb|ABQ75952.1| AAA-type ATPase [uncultured haloarchaeon] Length = 752 Score = 42.4 bits (99), Expect = 0.052, Method: Composition-based stats. Identities = 27/192 (14%), Positives = 72/192 (37%), Gaps = 41/192 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P + V+L GP G+GK+ LA ++++ ++ FS + + + Sbjct: 232 PPQGVLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDATEE 291 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLM--TARTFPVSWG 152 + + ++++D + QL +++ + +++ T R V Sbjct: 292 SPSIIFIDELDSIAPKREDVTGEVERRVVAQLLTMMDGLETRGQVIVIGATNRVDSVDPA 351 Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211 + P R ++I +PD+ ++++ R + + + Y+ + + F Sbjct: 352 LRRP---GRFD--REIEIGVPDEVGRKEILQ--IHTRGMPLSDDVSLDYLA---DETHGF 401 Query: 212 AEKLVDKMDNLA 223 ++ + A Sbjct: 402 VGADIESLTKEA 413 Score = 35.5 bits (81), Expect = 6.8, Method: Composition-based stats. Identities = 9/28 (32%), Positives = 18/28 (64%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS 94 V+L GP G+GK+ +A ++++ + S Sbjct: 509 VLLYGPPGTGKTLIAKAVANETNANFIS 536 >gi|317970117|ref|ZP_07971507.1| cell division protein FtsH4 [Synechococcus sp. CB0205] Length = 626 Score = 42.4 bits (99), Expect = 0.053, Method: Composition-based stats. Identities = 33/197 (16%), Positives = 65/197 (32%), Gaps = 43/197 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ FS A + + Sbjct: 200 VLLVGPPGTGKTLLAKAIAGEAGVPFFSMAASEFVELFVGVGASRVRDLFRQAKEKAPCI 259 Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + ND QL ++ + +L+ A P L Sbjct: 260 IFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFAENSGVILLAATNRPDVLDAAL 319 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 ++ + + LPD E ++ R + + L+ + R A Sbjct: 320 ------MRPGRFDRRIHVDLPDRRGREAILAVHARSRPLEPEVSLSDW-ASRTP-GFSGA 371 Query: 213 EKLVDKMDNLALSRGMG 229 L + ++ A+ Sbjct: 372 -DLSNLLNEAAILTARR 387 >gi|332654867|ref|ZP_08420609.1| ATP-dependent metalloprotease FtsH [Ruminococcaceae bacterium D16] gi|332516210|gb|EGJ45818.1| ATP-dependent metalloprotease FtsH [Ruminococcaceae bacterium D16] Length = 605 Score = 42.4 bits (99), Expect = 0.053, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 45/140 (32%), Gaps = 44/140 (31%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 +LVGP G+GK+ LA + ++ FS + + Sbjct: 203 ALLVGPPGTGKTLLAKAVAGEANVPFFSIAGSEFVEMFVGRGAAKVRDLFKQANEKAPCI 262 Query: 111 VLLEDIDLL--------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW----- 151 V +++ID + ND QL ++ +++ A P S Sbjct: 263 VFIDEIDTIGKKRDGQLAGNDEREQTLNQLLTEMDGFDGSKGVVVLAATNRPDSLDPALL 322 Query: 152 ---------GVCLPDLCSRL 162 V LPDL R+ Sbjct: 323 RPGRFDRRIPVELPDLQGRI 342 >gi|300865996|ref|ZP_07110730.1| vesicle-fusing ATPase [Oscillatoria sp. PCC 6506] gi|300335987|emb|CBN55888.1| vesicle-fusing ATPase [Oscillatoria sp. PCC 6506] Length = 611 Score = 42.4 bits (99), Expect = 0.053, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 59/160 (36%), Gaps = 43/160 (26%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS------------TRFSNIAKSLDSILIDTRKP-- 110 R ++L GP G+GK+ LA + ++R+ +++ + R+ Sbjct: 389 RGILLWGPPGTGKTLLAKAVASQARANFICVNGPELLSRWVGASEQAVRELFTKARQASP 448 Query: 111 --VLLEDIDLLDFND------------------TQLFHIINSIHQYDSSLLMTARTFPVS 150 V +++ID L T+L + NS + LL+ A P Sbjct: 449 CVVFIDEIDSLAPARGRHSGDSGVSDRVVGQLLTELDGLHNSANV----LLIGATNRPEI 504 Query: 151 WGVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADR 189 L L S RL +K+ LP+ + ++ DR Sbjct: 505 IDPAL--LRSGRLD--LQLKVDLPNLENRLAILEIHNQDR 540 Score = 39.0 bits (90), Expect = 0.57, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 47/130 (36%), Gaps = 28/130 (21%) Query: 54 RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLD 101 L++ P++ V+LVGP G+GK+ A +D+ + + L Sbjct: 112 ELLEKLGLEPTKGVLLVGPPGTGKTLTARALADELGVNYIALAGPEVMSKYYGEAEQKLR 171 Query: 102 SILIDTRK----PVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTAR 145 +I K V +++ID L + QL +++ Q +L+ A Sbjct: 172 AIFEKAAKNAPCLVFIDEIDSLAPDRSKVEGEVEKRLVAQLLSLMDGFAQTKGVILLAAT 231 Query: 146 TFPVSWGVCL 155 P L Sbjct: 232 NRPDHLDPAL 241 >gi|289432988|ref|YP_003462861.1| ATPase AAA [Dehalococcoides sp. GT] gi|288946708|gb|ADC74405.1| AAA ATPase central domain protein [Dehalococcoides sp. GT] Length = 452 Score = 42.4 bits (99), Expect = 0.053, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 52/137 (37%), Gaps = 21/137 (15%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF--N 122 +I GP GSGK+ LANI + + A S S + + V+ E + L Sbjct: 53 PSLIFWGPPGSGKTTLANIIAHSLDAHF---SALSAVSAGVADLRRVVEEARERLKLYHR 109 Query: 123 DTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 T LF H N + + +L+ A T S+ V L SR A V + Sbjct: 110 RTILFIDEIHRFNKSQQDAILPYVEDGTVVLIGATTENPSFEVNSA-LLSR---AQVYVL 165 Query: 171 SLPDDDFLEKVIVKMFA 187 + + + ++ + Sbjct: 166 NSLSEKEISVILKRSLE 182 >gi|164687537|ref|ZP_02211565.1| hypothetical protein CLOBAR_01178 [Clostridium bartlettii DSM 16795] gi|164603311|gb|EDQ96776.1| hypothetical protein CLOBAR_01178 [Clostridium bartlettii DSM 16795] Length = 338 Score = 42.4 bits (99), Expect = 0.053, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 3/74 (4%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P V+L GP G GK+ LA+I +++ +++ LE+ D+L + Sbjct: 57 PLDHVLLYGPPGLGKTTLASIIANEMGVNLRITSGPAIERAGDLAALLTNLEENDVLFID 116 Query: 123 DTQLFHIINSIHQY 136 + H IN + Sbjct: 117 EI---HRINRSVEE 127 >gi|56758882|gb|AAW27581.1| SJCHGC09453 protein [Schistosoma japonicum] Length = 802 Score = 42.4 bits (99), Expect = 0.053, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 65/166 (39%), Gaps = 33/166 (19%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A +++S S F SN+ K+ + + Sbjct: 234 PPRGILLYGPPGTGKTLVARAVANESGSFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 293 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + ++++D + QL +++ + Q ++M A P S Sbjct: 294 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRSHVIVMAATNRPNS---V 350 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199 P L R + ++I +PD +++ + ++ D L Sbjct: 351 DPALR-RFGRFDREIEIGIPDSIGRLEILRIHTKNVRLAKDVDLVQ 395 Score = 38.6 bits (89), Expect = 0.83, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 25/57 (43%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA + + ++ S L ++ + + + D Sbjct: 507 PSKGVLFYGPPGCGKTLLAKAIASECQANFISIKGPELLTMWFGESEANVRDIFDKA 563 >gi|73980099|ref|XP_850973.1| PREDICTED: similar to spastin isoform 1 isoform 1 [Canis familiaris] Length = 624 Score = 42.4 bits (99), Expect = 0.053, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 30/50 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S +T F+ A SL S + + ++ Sbjct: 382 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 431 >gi|15965138|ref|NP_385491.1| recombination factor protein RarA [Sinorhizobium meliloti 1021] gi|15074318|emb|CAC45964.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021] Length = 436 Score = 42.4 bits (99), Expect = 0.053, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 62/182 (34%), Gaps = 28/182 (15%) Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDID 117 S +I GP G+GK+ +A + S ++ + S I + + Sbjct: 49 ASGSLGSMIFWGPPGTGKTTVARLLSGEAGLAFEQISAIFSGVADLKKVFESA----RAR 104 Query: 118 LLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLK 163 + T LF H N + + +L+ T L SR Sbjct: 105 RMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVILVGATTENPSFELNAA---LLSR-- 159 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 A V+ D+ LE+++ + A + +D + A +++ + L +++ Sbjct: 160 -ARVLTFKPHDEASLEELLKRAEAAEGKPLPLDDEARASLIRMADGDGRAVLTLAEEVWR 218 Query: 222 LA 223 A Sbjct: 219 AA 220 >gi|11875211|ref|NP_055761.2| spastin isoform 1 [Homo sapiens] gi|114576879|ref|XP_001164367.1| PREDICTED: spastin isoform 1 [Pan troglodytes] gi|12230611|sp|Q9UBP0|SPAST_HUMAN RecName: Full=Spastin; AltName: Full=Spastic paraplegia 4 protein gi|6273491|emb|CAB60141.1| spastin protein [Homo sapiens] gi|6273493|emb|CAB60208.1| spastin protein [Homo sapiens] gi|119620866|gb|EAX00461.1| spastin, isoform CRA_a [Homo sapiens] gi|311348858|gb|ADP91574.1| spastin [Homo sapiens] gi|311348861|gb|ADP91576.1| spastin [Homo sapiens] gi|311348864|gb|ADP91578.1| spastin [Homo sapiens] gi|311348867|gb|ADP91580.1| spastin [Homo sapiens] gi|311348870|gb|ADP91582.1| spastin [Homo sapiens] gi|311348873|gb|ADP91584.1| spastin [Homo sapiens] gi|311348876|gb|ADP91586.1| spastin [Homo sapiens] gi|311348879|gb|ADP91588.1| spastin [Homo sapiens] gi|311348882|gb|ADP91590.1| spastin [Homo sapiens] gi|311348885|gb|ADP91592.1| spastin [Homo sapiens] gi|311348888|gb|ADP91594.1| spastin [Homo sapiens] gi|311348891|gb|ADP91596.1| spastin [Homo sapiens] gi|311348894|gb|ADP91598.1| spastin [Homo sapiens] gi|311348897|gb|ADP91600.1| spastin [Homo sapiens] gi|311348900|gb|ADP91602.1| spastin [Homo sapiens] gi|311348903|gb|ADP91604.1| spastin [Homo sapiens] gi|311348906|gb|ADP91606.1| spastin [Homo sapiens] gi|311348909|gb|ADP91608.1| spastin [Homo sapiens] gi|311348912|gb|ADP91610.1| spastin [Homo sapiens] gi|311348915|gb|ADP91612.1| spastin [Homo sapiens] gi|311348918|gb|ADP91614.1| spastin [Homo sapiens] gi|311348921|gb|ADP91616.1| spastin [Homo sapiens] gi|311348924|gb|ADP91618.1| spastin [Homo sapiens] gi|311348927|gb|ADP91620.1| spastin [Homo sapiens] gi|311348930|gb|ADP91622.1| spastin [Homo sapiens] gi|311348933|gb|ADP91624.1| spastin [Homo sapiens] gi|311348936|gb|ADP91626.1| spastin [Homo sapiens] gi|311348939|gb|ADP91628.1| spastin [Homo sapiens] gi|311348942|gb|ADP91630.1| spastin [Homo sapiens] gi|311348945|gb|ADP91632.1| spastin [Homo sapiens] gi|311348948|gb|ADP91634.1| spastin [Homo sapiens] gi|311348951|gb|ADP91636.1| spastin [Homo sapiens] gi|311348954|gb|ADP91638.1| spastin [Homo sapiens] gi|311348957|gb|ADP91640.1| spastin [Homo sapiens] gi|311348960|gb|ADP91642.1| spastin [Homo sapiens] gi|311348963|gb|ADP91644.1| spastin [Homo sapiens] gi|311348966|gb|ADP91646.1| spastin [Homo sapiens] gi|311348969|gb|ADP91648.1| spastin [Homo sapiens] gi|311348972|gb|ADP91650.1| spastin [Homo sapiens] gi|311348975|gb|ADP91652.1| spastin [Homo sapiens] Length = 616 Score = 42.4 bits (99), Expect = 0.053, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 30/50 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S +T F+ A SL S + + ++ Sbjct: 374 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 423 >gi|307322100|ref|ZP_07601476.1| AAA ATPase central domain protein [Sinorhizobium meliloti AK83] gi|306892282|gb|EFN23092.1| AAA ATPase central domain protein [Sinorhizobium meliloti AK83] Length = 436 Score = 42.4 bits (99), Expect = 0.053, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 62/182 (34%), Gaps = 28/182 (15%) Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDID 117 S +I GP G+GK+ +A + S ++ + S I + + Sbjct: 49 ASGSLGSMIFWGPPGTGKTTVARLLSGEAGLAFEQISAIFSGVADLKKVFESA----RAR 104 Query: 118 LLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLK 163 + T LF H N + + +L+ T L SR Sbjct: 105 RMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVILVGATTENPSFELNAA---LLSR-- 159 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 A V+ D+ LE+++ + A + +D + A +++ + L +++ Sbjct: 160 -ARVLTFKPHDEASLEELLKRAEAAEGKPLPLDDEARASLIRMADGDGRAVLTLAEEVWR 218 Query: 222 LA 223 A Sbjct: 219 AA 220 >gi|296114938|ref|ZP_06833584.1| recombination factor protein RarA [Gluconacetobacter hansenii ATCC 23769] gi|295978496|gb|EFG85228.1| recombination factor protein RarA [Gluconacetobacter hansenii ATCC 23769] Length = 466 Score = 42.4 bits (99), Expect = 0.053, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 49/144 (34%), Gaps = 26/144 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125 +IL G G GK+ +A + + + RF I+ + R E+ N Sbjct: 87 LILWGGPGVGKTTIARLLAHAAG-LRFVQISAVFSGVADLKR---AFEEARRRAANGEGT 142 Query: 126 -LF----HIINSIHQYD-------SSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N Q ++++ T + L SR V+ + Sbjct: 143 LLFVDEIHRFNRAQQDGFLPVVEDGTVVLVGATTENPSFALNGA---LLSR---CQVLVL 196 Query: 171 SLPDDDFLEKVIVKMFADRQIFID 194 DD LE+++ + + + Sbjct: 197 RRLDDAALEQLLCRAEGETGRALP 220 >gi|260101304|ref|ZP_05751541.1| AAA family ATPase [Lactobacillus helveticus DSM 20075] gi|260084889|gb|EEW69009.1| AAA family ATPase [Lactobacillus helveticus DSM 20075] Length = 89 Score = 42.4 bits (99), Expect = 0.053, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 21/35 (60%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS 99 +IL GP G+GK+ LA I + ++++ + A + Sbjct: 11 PSLILWGPPGTGKTTLAEIIAKRTKAHFITFSAVT 45 >gi|239906239|ref|YP_002952979.1| putative ABC transporter ATP-binding protein [Desulfovibrio magneticus RS-1] gi|239796104|dbj|BAH75093.1| putative ABC transporter ATP-binding protein [Desulfovibrio magneticus RS-1] Length = 666 Score = 42.4 bits (99), Expect = 0.053, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 11/73 (15%) Query: 17 KNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP--------SRVVI 68 + D+P + L FS P R D V +A + A D P WP + V Sbjct: 301 RGDRPDVRGRTLDFSLPEPE---RCDKTVCAAADLAYHWPDRAPLWPPLTFQLFRGQKVA 357 Query: 69 LVGPSGSGKSCLA 81 LVG +G+GK+ L Sbjct: 358 LVGHNGAGKTTLL 370 >gi|227485726|ref|ZP_03916042.1| cell division protein FtsH [Anaerococcus lactolyticus ATCC 51172] gi|227236281|gb|EEI86296.1| cell division protein FtsH [Anaerococcus lactolyticus ATCC 51172] Length = 680 Score = 42.4 bits (99), Expect = 0.053, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 46/140 (32%), Gaps = 45/140 (32%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 ++LVGP G+GK+ LA + +++ F+ + + Sbjct: 209 ILLVGPPGTGKTLLAKAVAGEAKVPFFTISGSEFVEMFVGMGASKVRDLFKQAKEKAPCI 268 Query: 111 VLLEDIDLL------------DFNDTQLFHIINS---IHQYDSSLLMTARTFPVSW---- 151 V +++ID + D + L ++N + +L+ A P Sbjct: 269 VFIDEIDAIGKKRDVSGYSGNDEREQTLNQLLNEMDGFDAAEGVVLLAATNRPEILDPAL 328 Query: 152 ----------GVCLPDLCSR 161 V LPDL R Sbjct: 329 TRPGRFDRQVQVELPDLKGR 348 >gi|225678772|gb|EEH17056.1| suppressor protein of bem1/bed5 double mutants [Paracoccidioides brasiliensis Pb03] Length = 434 Score = 42.4 bits (99), Expect = 0.053, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 14/80 (17%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + ++L GP G+GKS LA + ++ ST FS + L S + + ++ Sbjct: 164 PWKAILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESERLV---------- 213 Query: 123 DTQLFHIINSIHQYDSSLLM 142 QLF N + +++ Sbjct: 214 -KQLF---NMARENRPAIIF 229 >gi|195384848|ref|XP_002051124.1| GJ14536 [Drosophila virilis] gi|194147581|gb|EDW63279.1| GJ14536 [Drosophila virilis] Length = 356 Score = 42.4 bits (99), Expect = 0.053, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 32/76 (42%), Gaps = 11/76 (14%) Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 T+R P SR +++ P ++ + V+ + + +LA +V Sbjct: 168 TSRIIPAI--------RSR---CLGIRVPAPSENEMTAVLQSTCKREGLVLPPELAKRVV 216 Query: 203 QRMERSLVFAEKLVDK 218 ++ ER++ A +++ Sbjct: 217 EKSERNMRRALLMLEA 232 >gi|332227157|ref|XP_003262758.1| PREDICTED: spastin isoform 1 [Nomascus leucogenys] Length = 616 Score = 42.4 bits (99), Expect = 0.054, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 30/50 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S +T F+ A SL S + + ++ Sbjct: 374 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 423 >gi|325478877|gb|EGC81987.1| ATP-dependent metallopeptidase HflB [Anaerococcus prevotii ACS-065-V-Col13] Length = 651 Score = 42.4 bits (99), Expect = 0.054, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 45/140 (32%), Gaps = 45/140 (32%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ +A + ++ FS + + Sbjct: 209 VLLVGPPGTGKTLMAQAVAGEANVPFFSISGSEFVEMFVGMGASKVRDLFKQAKEKAPCI 268 Query: 111 VLLEDIDLL------------DFNDTQLFHIINS---IHQYDSSLLMTARTFPVSW---- 151 V +++ID + D + L ++N + +L+ A P Sbjct: 269 VFIDEIDAIGKKRDVSGYSGNDEREQTLNQLLNEMDGFDATEGVVLLAATNRPEILDPAL 328 Query: 152 ----------GVCLPDLCSR 161 V LPDL R Sbjct: 329 TRPGRFDRQVQVELPDLKGR 348 >gi|284161924|ref|YP_003400547.1| ATPase AAA [Archaeoglobus profundus DSM 5631] gi|284011921|gb|ADB57874.1| AAA family ATPase, CDC48 subfamily [Archaeoglobus profundus DSM 5631] Length = 1217 Score = 42.4 bits (99), Expect = 0.054, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 34/89 (38%), Gaps = 16/89 (17%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + ++L GP G+GK+ LA ++++ + S L S + + + + Sbjct: 546 PPKGILLYGPPGTGKTLLAKAVANEANANFISVKGPELLSKWVG----------ESITGD 595 Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSW 151 + L ++TA +W Sbjct: 596 EIVL------AKVNGKLKVLTAEELYNAW 618 Score = 39.4 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 60/162 (37%), Gaps = 33/162 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDT--R 108 P + V+L GP G+GK+ +A +++ + + L I + Sbjct: 215 PPKGVLLYGPPGTGKTLIAKAVANEVDAHFIPVSGPEIMSKYYGESEQRLREIFEEAKEN 274 Query: 109 KPVLL--EDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 P ++ ++ID + QL +++ + +++ A P + Sbjct: 275 APSIIFFDEIDAIAPKREEVTGEVERRVVAQLLALMDGLEARGDVIVIGATNRPDAID-- 332 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196 P L + ++I +PD + ++++ R + I+ Sbjct: 333 -PALRRPGRFDREIEIGVPDREGRKEILQ--IHTRGMPIEPD 371 >gi|257067200|ref|YP_003153456.1| ATP-dependent metalloprotease FtsH [Anaerococcus prevotii DSM 20548] gi|256799080|gb|ACV29735.1| ATP-dependent metalloprotease FtsH [Anaerococcus prevotii DSM 20548] Length = 662 Score = 42.4 bits (99), Expect = 0.054, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 45/140 (32%), Gaps = 45/140 (32%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ +A + ++ FS + + Sbjct: 209 VLLVGPPGTGKTLMAQAVAGEANVPFFSISGSEFVEMFVGMGASKVRDLFKQAKEKAPCI 268 Query: 111 VLLEDIDLL------------DFNDTQLFHIINS---IHQYDSSLLMTARTFPVSW---- 151 V +++ID + D + L ++N + +L+ A P Sbjct: 269 VFIDEIDAIGKKRDVSGYSGNDEREQTLNQLLNEMDGFDATEGVVLLAATNRPEILDPAL 328 Query: 152 ----------GVCLPDLCSR 161 V LPDL R Sbjct: 329 TRPGRFDRQVQVELPDLKGR 348 >gi|162148061|ref|YP_001602522.1| recombination factor protein RarA [Gluconacetobacter diazotrophicus PAl 5] gi|209542678|ref|YP_002274907.1| recombination factor protein RarA [Gluconacetobacter diazotrophicus PAl 5] gi|161786638|emb|CAP56221.1| ATPase, AAA family protein [Gluconacetobacter diazotrophicus PAl 5] gi|209530355|gb|ACI50292.1| AAA ATPase central domain protein [Gluconacetobacter diazotrophicus PAl 5] Length = 473 Score = 42.4 bits (99), Expect = 0.054, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 56/161 (34%), Gaps = 31/161 (19%) Query: 54 RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL 113 R++D +IL G G GK+ +A + +D + RF ++ + R Sbjct: 74 RMLDR---GSLASLILWGGPGVGKTTIARLLADAAG-LRFVQLSAVFSGVADLKR---AF 126 Query: 114 EDIDLL--DFNDTQLF----HIINSIHQYD-------SSLLM---TARTFPVSWGVCLPD 157 +D L T LF H N Q ++++ T + Sbjct: 127 DDARRLGEAGQGTLLFVDEIHRFNRAQQDGFLPVVEDGTVVLVGATTENPSFALNGA--- 183 Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKM--FADRQIFIDKK 196 L SR V+ + DD LE+++ + R + + Sbjct: 184 LLSR---CQVMVLRRLDDPALERLLCRAEEATGRALPLTPD 221 >gi|160893315|ref|ZP_02074102.1| hypothetical protein CLOL250_00864 [Clostridium sp. L2-50] gi|156865007|gb|EDO58438.1| hypothetical protein CLOL250_00864 [Clostridium sp. L2-50] Length = 438 Score = 42.4 bits (99), Expect = 0.054, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 77/201 (38%), Gaps = 32/201 (15%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI---DLLDF 121 +I GP G+GK+ LA + + +++ A + ++ ++E+ + Sbjct: 53 GSLIFYGPPGTGKTTLAMVIAHTTKADFKQINATTSGKKDMEQ----IIEEAKNTKAMYG 108 Query: 122 NDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 T LF H N + + +L+ A T + V L SR + + + Sbjct: 109 RRTILFIDEIHRFNKSQQDYLLPFVEDGTIILIGATTENPYFEVNGA-LISR---SNIFE 164 Query: 170 ISLPDDDFLEKVIVKMFADRQ------IFIDKKLAAYIVQRMERSLVFAEKLVDK--MDN 221 + + ++ +I+K D++ + ID ++ E A V+ + + Sbjct: 165 LKPLSKENIKDIILKAVYDQKGMGAFNVCIDDDAVEFLSDMSEGDARSALNAVELGVLSS 224 Query: 222 LALSRGM-GITRSLAAEVLKE 241 + G IT ++A E ++ Sbjct: 225 EPAADGRIHITLAVAEECIQR 245 >gi|145509587|ref|XP_001440732.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124407960|emb|CAK73335.1| unnamed protein product [Paramecium tetraurelia] Length = 466 Score = 42.4 bits (99), Expect = 0.054, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 14/76 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G+GK+ LA + + T FS + L S + + ++ E Sbjct: 200 ILLYGPPGTGKTFLAKACATECDGTFFSVSSADLISKFVGESERLIKE------------ 247 Query: 127 FHIINSIHQYDSSLLM 142 + N + +++ Sbjct: 248 --LFNMARESKPTIIF 261 >gi|294905732|ref|XP_002777666.1| 26S protease subunit regulatory subunit 6a, putative [Perkinsus marinus ATCC 50983] gi|239885557|gb|EER09482.1| 26S protease subunit regulatory subunit 6a, putative [Perkinsus marinus ATCC 50983] Length = 459 Score = 42.4 bits (99), Expect = 0.054, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 62/171 (36%), Gaps = 39/171 (22%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + ++L GP G+GK+ +A + + +T L + I ++ Sbjct: 237 PPKGLLLYGPPGTGKTMMARSCAAATNATFLKLAGPQLVQMFIGDGSKMVRDAFNLAKEK 296 Query: 113 ------LEDIDLLDFN-------------DTQLFHIINSIH---QYDSSLLMTARTFPVS 150 ++++D + + ++N + D ++ A Sbjct: 297 APAIIFIDELDAIGMKRSAGGELSGVREVQRTMLELLNQLDGFSSDDRVKVIAATNRADM 356 Query: 151 WGVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L L S RL V++ LP++D ++++ R++ ++K + Sbjct: 357 LDPAL--LRSGRLD--RKVELPLPNEDARKRILQ--IHSRKMNVNKDDVNF 401 >gi|226288798|gb|EEH44310.1| 26S protease regulatory subunit 6A [Paracoccidioides brasiliensis Pb18] Length = 462 Score = 42.4 bits (99), Expect = 0.054, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 54/160 (33%), Gaps = 38/160 (23%) Query: 70 VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113 GP G+GK+ LA + ++ +T L + I ++ + Sbjct: 248 YGPPGTGKTLLARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPSIIFI 307 Query: 114 EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158 +++D + + ++N D ++ A L L Sbjct: 308 DELDAVGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRVKVLAATNRVDVLDPAL--L 365 Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 S RL ++ LP+++ +++ R++ +D + Sbjct: 366 RSGRLD--RKIEFPLPNEEARAQIL--RIHSRKMAVDDGV 401 >gi|255590995|ref|XP_002535413.1| conserved hypothetical protein [Ricinus communis] gi|223523182|gb|EEF26968.1| conserved hypothetical protein [Ricinus communis] Length = 252 Score = 42.4 bits (99), Expect = 0.054, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 45/108 (41%), Gaps = 23/108 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKS-----------RSTRFSNIAKSLDSILIDTRKPVLLED 115 V+LVG G+GK+ LA ++ + +N+ ++ + L + Sbjct: 95 VVLVGGPGTGKTHLATAIGTQAIEQHSCRVRFFSTVELANLLEAEKQQGRSGNLAMKLVN 154 Query: 116 IDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 DL+ ++ LFH+I+ +++ +SL++T WG Sbjct: 155 TDLVILDEVGYLPFSQTGGALLFHLISKLYER-TSLIITTNLGFSEWG 201 >gi|154757528|gb|AAI51634.1| WRNIP1 protein [Bos taurus] Length = 545 Score = 42.4 bits (99), Expect = 0.054, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 16/83 (19%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA+I ++ S+ ++ + K + D+ N+ Sbjct: 142 PSLILWGPPGCGKTTLAHIIANNSKKHSI-----RFVTLSATSAKTTDVRDVIKQAQNEK 196 Query: 125 QLF-----------HIINSIHQY 136 + F H N Q Sbjct: 197 RFFKRKTILFIDEIHRFNKSQQD 219 >gi|117927413|ref|YP_871964.1| Mername-AA223 peptidase [Acidothermus cellulolyticus 11B] gi|117647876|gb|ABK51978.1| membrane protease FtsH catalytic subunit [Acidothermus cellulolyticus 11B] Length = 654 Score = 42.4 bits (99), Expect = 0.054, Method: Composition-based stats. Identities = 32/210 (15%), Positives = 67/210 (31%), Gaps = 43/210 (20%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+L GP G+GK+ LA + ++ +S + + Sbjct: 187 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFQQAKENAPAI 246 Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 V +++ID + D + L + ++ +L+ A P L Sbjct: 247 VFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDVKGGVILIAATNRPDILDPAL 306 Query: 156 PDLCSRLKAA---TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 L+ + + PD + + ++ + D L I +R A Sbjct: 307 ------LRPGRFDRHIVVDRPDLEGRKGILRVHAKGKPFAPDVDL-DVIARRTP-GFTGA 358 Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKET 242 L + ++ AL + + L+E+ Sbjct: 359 -DLANVINEAALLTARANQKQITMATLEES 387 >gi|110669061|ref|YP_658872.1| AAA-type ATPase (transitional ATPase homolog) [Haloquadratum walsbyi DSM 16790] gi|109626808|emb|CAJ53276.1| AAA-type ATPase (transitional ATPase homolog) [Haloquadratum walsbyi DSM 16790] Length = 742 Score = 42.4 bits (99), Expect = 0.054, Method: Composition-based stats. Identities = 27/192 (14%), Positives = 72/192 (37%), Gaps = 41/192 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P + V+L GP G+GK+ LA ++++ ++ FS + + + Sbjct: 222 PPQGVLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDATEE 281 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLM--TARTFPVSWG 152 + + ++++D + QL +++ + +++ T R V Sbjct: 282 SPSIIFIDELDSIAPKREDVTGEVERRVVAQLLTMMDGLETRGQVIVIGATNRVDSVDPA 341 Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211 + P R ++I +PD+ ++++ R + + + Y+ + + F Sbjct: 342 LRRP---GRFD--REIEIGVPDEVGRKEILQ--IHTRGMPLSDDVSLDYLA---DETHGF 391 Query: 212 AEKLVDKMDNLA 223 ++ + A Sbjct: 392 VGADIESLTKEA 403 Score = 35.5 bits (81), Expect = 6.8, Method: Composition-based stats. Identities = 9/28 (32%), Positives = 18/28 (64%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS 94 V+L GP G+GK+ +A ++++ + S Sbjct: 499 VLLYGPPGTGKTLIAKAVANETNANFIS 526 >gi|89896741|ref|YP_520228.1| hypothetical protein DSY3995 [Desulfitobacterium hafniense Y51] gi|89336189|dbj|BAE85784.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 234 Score = 42.4 bits (99), Expect = 0.054, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 16/61 (26%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123 + + L+GPSGSGKS L +I L ++ T V ++DID+ ++ Sbjct: 35 GQFLALLGPSGSGKSTLLSI----------------LGALNPPTEGKVFIDDIDIYGLDE 78 Query: 124 T 124 Sbjct: 79 E 79 >gi|332205010|gb|EGJ19074.1| hypothetical protein SPAR93_0134 [Streptococcus pneumoniae GA47368] Length = 213 Score = 42.4 bits (99), Expect = 0.054, Method: Composition-based stats. Identities = 11/33 (33%), Positives = 17/33 (51%) Query: 49 IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 + A R+ W ++L G +G+GKS LA Sbjct: 60 LAFAKRICREWSEGARNNIVLQGEAGTGKSHLA 92 >gi|332201913|gb|EGJ15982.1| hypothetical protein SPAR69_0024 [Streptococcus pneumoniae GA41317] Length = 213 Score = 42.4 bits (99), Expect = 0.054, Method: Composition-based stats. Identities = 11/33 (33%), Positives = 17/33 (51%) Query: 49 IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 + A R+ W ++L G +G+GKS LA Sbjct: 60 LAFAKRICREWSEGARNNIVLQGEAGTGKSHLA 92 >gi|317129448|ref|YP_004095730.1| IstB domain protein ATP-binding protein [Bacillus cellulosilyticus DSM 2522] gi|315474396|gb|ADU30999.1| IstB domain protein ATP-binding protein [Bacillus cellulosilyticus DSM 2522] Length = 267 Score = 42.4 bits (99), Expect = 0.054, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 48/126 (38%), Gaps = 25/126 (19%) Query: 50 EQAVRLIDSWPSWPSRVVILVGPSGSGKSCL----ANIWSDKSRSTRFSNIAKSLDSI-- 103 E A+R ++S+ R ++L G G+GKS L A DK F + L ++ Sbjct: 113 EIAIRYVNSFDHDNPRGLLLFGNYGTGKSHLSVSIAKKIVDKRNFVVFLPVPDYLANLKA 172 Query: 104 --------------LIDTRKPVLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTART 146 I ++L+DI D + + +LF IIN + + T+ Sbjct: 173 TYGNNSDTELRIINKIARVPLLILDDIGRVDPSGWVEEKLFQIIN--RRIGMHTIYTSNF 230 Query: 147 FPVSWG 152 P Sbjct: 231 GPSELP 236 >gi|301799181|emb|CBW31694.1| DNA replication protein [Streptococcus pneumoniae OXC141] Length = 262 Score = 42.4 bits (99), Expect = 0.054, Method: Composition-based stats. Identities = 11/33 (33%), Positives = 17/33 (51%) Query: 49 IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 + A R+ W ++L G +G+GKS LA Sbjct: 109 LAFAKRICREWSEGARNNIVLQGEAGTGKSHLA 141 >gi|239625342|ref|ZP_04668373.1| AAA ATPase central domain-containing protein [Clostridiales bacterium 1_7_47_FAA] gi|239519572|gb|EEQ59438.1| AAA ATPase central domain-containing protein [Clostridiales bacterium 1_7_47FAA] Length = 442 Score = 42.4 bits (99), Expect = 0.054, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 20/136 (14%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFS-------------NIAKSLDSILIDTRKPV 111 +I GP G GK+ LA I + K+ + + +A++ +S + + V Sbjct: 51 PSMIFWGPPGVGKTTLAGIIAHKTHAEFINFSAVTSGIKEIKEVMAQAENSRRMGIKTVV 110 Query: 112 LLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++I + F + S +L+ A T S+ + L SR V + Sbjct: 111 FVDEIHRFNKAQQDAFLPY---VEKGSIILIGATTENPSFEINGA-LLSR---CRVFVLQ 163 Query: 172 LPDDDFLEKVIVKMFA 187 + L ++ K Sbjct: 164 ALTQENLSCLLKKALK 179 >gi|256393040|ref|YP_003114604.1| IstB domain-containing protein ATP-binding protein [Catenulispora acidiphila DSM 44928] gi|256359266|gb|ACU72763.1| IstB domain protein ATP-binding protein [Catenulispora acidiphila DSM 44928] Length = 263 Score = 42.4 bits (99), Expect = 0.054, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 39/104 (37%), Gaps = 19/104 (18%) Query: 67 VILVGPSGSGKSC----LANIWSDKSRSTRFSNIAKSLDSILIDTR-------------- 108 VIL GP G GK+ L ++ + + +F+ ++ L + Sbjct: 104 VILFGPVGVGKTHVAQGLGHLAVRQGAAVQFAKTSRVLADLAGGHADRTWDKRVRELVRP 163 Query: 109 KPVLLEDIDLLDFNDTQLFHIINSIHQ-YDSSLLMTARTFPVSW 151 ++L+D + Q + + + SL++T+ P W Sbjct: 164 DVLILDDFAMRQMTAPQADDLYELVSERQGRSLIITSNRAPSDW 207 >gi|225855771|ref|YP_002737282.1| gp21 [Streptococcus pneumoniae P1031] gi|225724453|gb|ACO20305.1| gp21 [Streptococcus pneumoniae P1031] Length = 213 Score = 42.4 bits (99), Expect = 0.054, Method: Composition-based stats. Identities = 11/33 (33%), Positives = 17/33 (51%) Query: 49 IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 + A R+ W ++L G +G+GKS LA Sbjct: 60 LAFAKRICREWSEGARNNIVLQGEAGTGKSHLA 92 >gi|198412134|ref|XP_002122137.1| PREDICTED: similar to valosin-containing protein, partial [Ciona intestinalis] Length = 256 Score = 42.4 bits (99), Expect = 0.054, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 34/74 (45%), Gaps = 16/74 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ + F SN+ ++ + + Sbjct: 90 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRRAFEEAEKN 149 Query: 107 TRKPVLLEDIDLLD 120 + ++++D + Sbjct: 150 APAIIFIDELDAIA 163 Score = 39.7 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S + ++ + + E D Sbjct: 184 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEMLTMWFGESEANVREVFDKA 240 >gi|183603743|ref|ZP_02719083.2| gp21 [Streptococcus pneumoniae CDC3059-06] gi|183575197|gb|EDT95725.1| gp21 [Streptococcus pneumoniae CDC3059-06] Length = 213 Score = 42.4 bits (99), Expect = 0.054, Method: Composition-based stats. Identities = 11/33 (33%), Positives = 17/33 (51%) Query: 49 IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 + A R+ W ++L G +G+GKS LA Sbjct: 60 LAFAKRICREWSEGARNNIVLQGEAGTGKSHLA 92 >gi|172079635|ref|ZP_02709747.2| gp21 [Streptococcus pneumoniae CDC1873-00] gi|172042045|gb|EDT50091.1| gp21 [Streptococcus pneumoniae CDC1873-00] Length = 252 Score = 42.4 bits (99), Expect = 0.054, Method: Composition-based stats. Identities = 11/33 (33%), Positives = 17/33 (51%) Query: 49 IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 + A R+ W ++L G +G+GKS LA Sbjct: 99 LAFAKRICREWSEGARNNIVLQGEAGTGKSHLA 131 >gi|169833703|ref|YP_001693464.1| hypothetical protein SPH_0040 [Streptococcus pneumoniae Hungary19A-6] gi|307066668|ref|YP_003875634.1| DNA replication protein [Streptococcus pneumoniae AP200] gi|168996205|gb|ACA36817.1| gp21 [Streptococcus pneumoniae Hungary19A-6] gi|306408205|gb|ADM83632.1| DNA replication protein [Streptococcus phage PhiSpn_200] Length = 256 Score = 42.4 bits (99), Expect = 0.054, Method: Composition-based stats. Identities = 11/33 (33%), Positives = 17/33 (51%) Query: 49 IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 + A R+ W ++L G +G+GKS LA Sbjct: 103 LAFAKRICREWSEGARNNIVLQGEAGTGKSHLA 135 >gi|168494849|ref|ZP_02718992.1| gp21 [Streptococcus pneumoniae CDC3059-06] gi|168494887|ref|ZP_02719030.1| gp21 [Streptococcus pneumoniae CDC3059-06] gi|168495011|ref|ZP_02719154.1| gp21 [Streptococcus pneumoniae CDC3059-06] gi|183575141|gb|EDT95669.1| gp21 [Streptococcus pneumoniae CDC3059-06] gi|183575214|gb|EDT95742.1| gp21 [Streptococcus pneumoniae CDC3059-06] gi|183575290|gb|EDT95818.1| gp21 [Streptococcus pneumoniae CDC3059-06] Length = 256 Score = 42.4 bits (99), Expect = 0.054, Method: Composition-based stats. Identities = 11/33 (33%), Positives = 17/33 (51%) Query: 49 IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 + A R+ W ++L G +G+GKS LA Sbjct: 103 LAFAKRICREWSEGARNNIVLQGEAGTGKSHLA 135 >gi|168483725|ref|ZP_02708677.1| gp21 [Streptococcus pneumoniae CDC1873-00] gi|168484677|ref|ZP_02709629.1| gp21 [Streptococcus pneumoniae CDC1873-00] gi|172042150|gb|EDT50196.1| gp21 [Streptococcus pneumoniae CDC1873-00] gi|172042930|gb|EDT50976.1| gp21 [Streptococcus pneumoniae CDC1873-00] Length = 256 Score = 42.4 bits (99), Expect = 0.054, Method: Composition-based stats. Identities = 11/33 (33%), Positives = 17/33 (51%) Query: 49 IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 + A R+ W ++L G +G+GKS LA Sbjct: 103 LAFAKRICREWSEGARNNIVLQGEAGTGKSHLA 135 >gi|148986131|ref|ZP_01819117.1| putative phage DNA replication protein [Streptococcus pneumoniae SP3-BS71] gi|147921845|gb|EDK72972.1| putative phage DNA replication protein [Streptococcus pneumoniae SP3-BS71] Length = 256 Score = 42.4 bits (99), Expect = 0.054, Method: Composition-based stats. Identities = 11/33 (33%), Positives = 17/33 (51%) Query: 49 IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 + A R+ W ++L G +G+GKS LA Sbjct: 103 LAFAKRICREWSEGARNNIVLQGEAGTGKSHLA 135 >gi|148998970|ref|ZP_01826404.1| putative phage DNA replication protein [Streptococcus pneumoniae SP11-BS70] gi|147755178|gb|EDK62231.1| putative phage DNA replication protein [Streptococcus pneumoniae SP11-BS70] Length = 256 Score = 42.4 bits (99), Expect = 0.054, Method: Composition-based stats. Identities = 11/33 (33%), Positives = 17/33 (51%) Query: 49 IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 + A R+ W ++L G +G+GKS LA Sbjct: 103 LAFAKRICREWSEGARNNIVLQGEAGTGKSHLA 135 >gi|87200560|ref|YP_497817.1| recombination factor protein RarA [Novosphingobium aromaticivorans DSM 12444] gi|87136241|gb|ABD26983.1| Recombination protein MgsA [Novosphingobium aromaticivorans DSM 12444] Length = 452 Score = 42.4 bits (99), Expect = 0.054, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 49/142 (34%), Gaps = 22/142 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G+GK+ +A + ++ + A S + D +K + L T L Sbjct: 72 MILWGPPGTGKTSIARLLAEAVGMRYVAISAVF--SGVADLKKAFAEAEAMALAGRRTLL 129 Query: 127 F----HIINSIHQYD---------SSLLMTARTFPV-SWGVCLPDLCSRLKAATVVKISL 172 F H N Q +L+ P + L SR A V+ + Sbjct: 130 FVDEIHRFNRAQQDGFLPFVENGTVTLVGATTENPSFALNAA---LLSR---AQVLILHR 183 Query: 173 PDDDFLEKVIVKMFADRQIFID 194 D L ++ + + + Sbjct: 184 LDAAALGTLLDRAEDVTGLRLP 205 >gi|159111570|ref|XP_001706016.1| 26S protease regulatory subunit 6A [Giardia lamblia ATCC 50803] gi|157434108|gb|EDO78342.1| 26S protease regulatory subunit 6A [Giardia lamblia ATCC 50803] Length = 501 Score = 42.4 bits (99), Expect = 0.054, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 PS+ V+L G G+GK+ LA + ++ + A L + I +++E Sbjct: 258 PSKGVLLYGVPGTGKTALARALAHEANCSFLQLTATQLVQLYIGDGSAMVIE 309 >gi|310816981|ref|YP_003964945.1| ATPase, AAA family protein [Ketogulonicigenium vulgare Y25] gi|308755716|gb|ADO43645.1| ATPase, AAA family protein [Ketogulonicigenium vulgare Y25] Length = 441 Score = 42.4 bits (99), Expect = 0.055, Method: Composition-based stats. Identities = 32/197 (16%), Positives = 74/197 (37%), Gaps = 27/197 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKS--RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ +A + +D++ + S I + + + + T Sbjct: 57 LILWGPPGVGKTTIARLLADQTSLAFVQISAIFTGVPDLKKVFEGA----RLRRANGQGT 112 Query: 125 QLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N + + +L+ T L SR + + ++ Sbjct: 113 LLFVDEIHRFNKAQQDSFLPHMEDGTIVLVGATTENPSFELNAA---LLSRAQVLVLNRL 169 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 +L D + L + + A R++ ++ +++ + L++++ +A + Sbjct: 170 TLADLERLAQRAEQELA-RKLPLNGPARDALLEMADGDGRALLNLIEQV--MAWRVQQPL 226 Query: 231 TR-SLAAEVLKETQQCD 246 T L+ ++K + D Sbjct: 227 TTDDLSRRLMKRAVRYD 243 >gi|242371659|ref|ZP_04817233.1| cell division protein FtsH [Staphylococcus epidermidis M23864:W1] gi|242350608|gb|EES42209.1| cell division protein FtsH [Staphylococcus epidermidis M23864:W1] Length = 709 Score = 42.4 bits (99), Expect = 0.055, Method: Composition-based stats. Identities = 30/198 (15%), Positives = 66/198 (33%), Gaps = 45/198 (22%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ + FS + + Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260 Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + + L + ++ + + +++ A P L Sbjct: 261 IFIDEIDAVGRQRGAGVGGGHDEREQTLNQLLVEMDGFGENEGIIMIAATNRPDILDPAL 320 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211 L+ +++ PD E ++ R +D+ + I QR Sbjct: 321 ------LRPGRFDRQIQVGRPDVKGREAIL--HVHARNKPLDETVDLKAISQRTP-GFSG 371 Query: 212 AEKLVDKMDNLALSRGMG 229 A L + ++ +L Sbjct: 372 A-DLENLLNEASLIAARE 388 >gi|197284594|ref|YP_002150466.1| recombination factor protein RarA [Proteus mirabilis HI4320] gi|194682081|emb|CAR41637.1| putative ATPase [Proteus mirabilis HI4320] Length = 449 Score = 42.4 bits (99), Expect = 0.055, Method: Composition-based stats. Identities = 43/199 (21%), Positives = 69/199 (34%), Gaps = 38/199 (19%) Query: 67 VILVGPSGSGKSCLANIWS--DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G+GK+ LA I ++ R S + + I R + + + T Sbjct: 53 MILWGPPGTGKTTLAEIIGRYAQADIERLSAVTSGIKEI----RAAIDIAHQNRNAGRRT 108 Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N Q D ++ T L SR A V + Sbjct: 109 ILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSA---LLSR---ARVYLL 162 Query: 171 SLPDDDFLEKVIVKMFAD-------RQIFIDK---KLAAYIVQ-RMERSLVFAEKLVDKM 219 + +E+V+ + D R I + K+ A +V RSL E + D Sbjct: 163 RSLTETDIEQVLQQALDDTERGLGGRNIILPDNTRKMIAELVNGDARRSLNLLEMMADMA 222 Query: 220 DNLALSRGMGITRSLAAEV 238 + + +T L E+ Sbjct: 223 EVDS-QGKRTLTAELLKEI 240 >gi|297584757|ref|YP_003700537.1| Holliday junction DNA helicase RuvB [Bacillus selenitireducens MLS10] gi|297143214|gb|ADH99971.1| Holliday junction DNA helicase RuvB [Bacillus selenitireducens MLS10] Length = 333 Score = 42.4 bits (99), Expect = 0.055, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 3/70 (4%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G GK+ LA I +++ + +++ LE D+L ++ Sbjct: 56 VLLYGPPGLGKTTLATIIANELGVQIRTTSGPAIERPGDLAAVLTALEPGDVLFIDEI-- 113 Query: 127 FHIINSIHQY 136 H +N + Sbjct: 114 -HRLNRAVEE 122 >gi|157363945|ref|YP_001470712.1| recombination factor protein RarA [Thermotoga lettingae TMO] gi|157314549|gb|ABV33648.1| AAA ATPase central domain protein [Thermotoga lettingae TMO] Length = 436 Score = 42.4 bits (99), Expect = 0.055, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 75/191 (39%), Gaps = 32/191 (16%) Query: 68 ILVGPSGSGKSCLANIWSDKSRSTRF-------------SNIAKSLDSILIDTRKPVLLE 114 +L GP G GKS +A + + F + ++ + + + ++ Sbjct: 48 VLYGPPGCGKSSIAELIRKHVDAEFFFFSGALHGANDIKQAMNRAQEMKRYGKQTIIFID 107 Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL-P 173 +I L+ L +++ + + + L+ A T S+ + P L SR V+ + Sbjct: 108 EIHRLNKAQQDL--LLSKV-EDGTITLIGATTENPSFEIIPP-LLSR---CRVIFLKPLS 160 Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233 +++ ++ + R I +D+K+A+Y + + ++ AL+ T Sbjct: 161 NEELIKIM------KRAIIVDEKIASYEINVTDEVFQAIAQMSQGDARFALN-----TLE 209 Query: 234 LAAEVLKETQQ 244 +A E + Q Sbjct: 210 IAIEAARGMNQ 220 >gi|119872050|ref|YP_930057.1| AAA family ATPase, CDC48 subfamily protein [Pyrobaculum islandicum DSM 4184] gi|119673458|gb|ABL87714.1| AAA family ATPase, CDC48 subfamily [Pyrobaculum islandicum DSM 4184] Length = 738 Score = 42.4 bits (99), Expect = 0.055, Method: Composition-based stats. Identities = 18/121 (14%), Positives = 46/121 (38%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTR-- 108 P + ++L+GP G+GK+ LA ++++ + + L I + + Sbjct: 210 PPKGILLIGPPGTGKTLLAKAVANEANAYFVAINGPEIMSKYYGESEARLREIFEEAKKN 269 Query: 109 --KPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + + +++ A P + Sbjct: 270 APAIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLQERGQVIVIGATNRPDAIDPA 329 Query: 155 L 155 L Sbjct: 330 L 330 Score = 37.1 bits (85), Expect = 2.4, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 18/38 (47%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P + ++L GP G GK+ A + +S + + L Sbjct: 498 PPKGILLFGPPGVGKTLFAKAVATESGANFIAVRGPEL 535 >gi|146305021|ref|YP_001192337.1| proteasome-activating nucleotidase [Metallosphaera sedula DSM 5348] gi|145703271|gb|ABP96413.1| Proteasome-activating nucleotidase [Metallosphaera sedula DSM 5348] Length = 379 Score = 42.4 bits (99), Expect = 0.055, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 27/57 (47%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P + ++L GP G+GK+ LA + +S ++ +A + V+ + +L Sbjct: 154 PPKGILLYGPPGTGKTMLAKAVATESNASFIHVVASEFAQKFVGEGARVVRDVFELA 210 >gi|26341102|dbj|BAC34213.1| unnamed protein product [Mus musculus] Length = 660 Score = 42.4 bits (99), Expect = 0.055, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 16/83 (19%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA+I ++ S+ + S + + + D+ N+ Sbjct: 257 PSLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 311 Query: 125 QLF-----------HIINSIHQY 136 F H N Q Sbjct: 312 SFFKRKTILFIDEIHRFNKSQQD 334 >gi|83766813|dbj|BAE56953.1| unnamed protein product [Aspergillus oryzae] Length = 491 Score = 42.4 bits (99), Expect = 0.055, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 53/160 (33%), Gaps = 38/160 (23%) Query: 70 VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113 GP G+GK+ LA + ++ +T L + I ++ + Sbjct: 277 YGPPGTGKTLLARACAAETNATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPSIIFI 336 Query: 114 EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158 +++D + + ++N D ++ A L L Sbjct: 337 DELDAVGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRIKVLAATNRVDVLDPAL--L 394 Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 S RL ++ LP+++ ++ R++ +D + Sbjct: 395 RSGRLD--RKIEFPLPNEEARANILQ--IHSRKMAVDDSV 430 >gi|28378253|ref|NP_785145.1| recombination factor protein RarA [Lactobacillus plantarum WCFS1] gi|28271088|emb|CAD63993.1| chromosome segregation helicase (putative) [Lactobacillus plantarum WCFS1] Length = 458 Score = 42.4 bits (99), Expect = 0.055, Method: Composition-based stats. Identities = 35/155 (22%), Positives = 56/155 (36%), Gaps = 22/155 (14%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLD-- 120 +I GP G GK+ LA I + +++S FS + + I + D Sbjct: 52 PSLIFWGPPGVGKTTLAEIIAQQTQSHFITFSAVTSGIKEIRQIMDEAEANRDFGEKTIV 111 Query: 121 -FNDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 ++ H N + S L+ A T S+ + L SR K V+K Sbjct: 112 FIDEI---HRFNKAQQDAFLPYVERGSITLIGATTENPSFEINAA-LLSRCK-VLVLKAL 166 Query: 172 LPD--DDFLEKVIV--KMFADRQIFIDKKLAAYIV 202 PD + L+ + K F D +I + I Sbjct: 167 TPDALEAVLQGALQNPKGFPDLEITMQPDTLRLIA 201 >gi|329889161|ref|ZP_08267504.1| ATPase family associated with various cellular activities AAA family protein [Brevundimonas diminuta ATCC 11568] gi|328844462|gb|EGF94026.1| ATPase family associated with various cellular activities AAA family protein [Brevundimonas diminuta ATCC 11568] Length = 434 Score = 42.4 bits (99), Expect = 0.055, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 60/188 (31%), Gaps = 37/188 (19%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G+GK+ +A + + + S A S + D +K + T Sbjct: 52 GSMILWGPPGTGKTTIARLLAKAAGYEYQSISAVF--SGVADLKKAFEAARMRRAAGQQT 109 Query: 125 QLF----HIINSIHQYD---------SSLLMTARTFPV-SWGVCLPDLCSRLKAATVVKI 170 LF H N Q +L+ P L SR + V + Sbjct: 110 LLFVDEIHRFNRAQQDGFLPFVEEGIVTLVGATTENPSFELNGA---LLSR---SQVYVL 163 Query: 171 SLP-----------DDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKLVD 217 + + K++ RQ + + Y++ M L V+ Sbjct: 164 KRLDDASLDLLLDRAEALMGKLLPLTPEARQAMLALADGDGRYLLT-MSEVLFDLTD-VE 221 Query: 218 KMDNLALS 225 +D AL+ Sbjct: 222 PLDVQALA 229 >gi|262182974|ref|ZP_06042395.1| Putative transposase [Corynebacterium aurimucosum ATCC 700975] Length = 169 Score = 42.4 bits (99), Expect = 0.055, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 53/150 (35%), Gaps = 30/150 (20%) Query: 58 SWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------- 104 +W P+ + IL P+G+GK+ +A + +S L ++ Sbjct: 15 NWRENPTNIHILA-PTGTGKTYIACAIGIAACKAGYSVAYYRLGQLVDMLAVFSPTDQNY 73 Query: 105 ------IDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL--LMTARTFPVSWGVCLP 156 + ++++D + N + I D L L+++++ W LP Sbjct: 74 LDKMRKLINVDVLIIDDFMTISINQRGQEDLTKIIFDRDGRLPTLISSQSAAAYWVETLP 133 Query: 157 D------LCSRLKAATVVKISLPDDDFLEK 180 D L SRL + I D D + Sbjct: 134 DRVGADSLVSRLNNGHRIHIG--DFDMRKA 161 >gi|262068258|ref|ZP_06027870.1| holliday junction DNA helicase RuvB [Fusobacterium periodonticum ATCC 33693] gi|291377996|gb|EFE85514.1| holliday junction DNA helicase RuvB [Fusobacterium periodonticum ATCC 33693] Length = 338 Score = 42.4 bits (99), Expect = 0.055, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 64/183 (34%), Gaps = 41/183 (22%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G GK+ LA + +++ ++ L+ LE+ D+L ++ Sbjct: 55 ILLYGPPGLGKTTLAGVIANEMQANLKITSGPILEKAGDLAAILTSLEENDILFIDEI-- 112 Query: 127 FHIINS--------IHQYDSSLLMTARTFPV-SWGVCLP-----------DLCS---RLK 163 H +N+ + ++ + S + LP L S R + Sbjct: 113 -HRLNNTVEEILYPAMEDGELDIIIGKGPSAKSIRIELPAFTLIGATTRAGLLSAPLRDR 171 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKK--------------LAAYIVQRMERSL 209 K+ + D ++ +I++ + I + +A +++R+ R Sbjct: 172 FGVSHKMEYYNIDEIKAIIIRGAKILGVKISDEGAIEISKRSRGTPRIANRLLKRV-RDY 230 Query: 210 VFA 212 Sbjct: 231 CEI 233 >gi|189218507|ref|YP_001939148.1| Holliday junction resolvasome, helicase subunit RuvB [Methylacidiphilum infernorum V4] gi|189185365|gb|ACD82550.1| Holliday junction resolvasome, helicase subunit RuvB [Methylacidiphilum infernorum V4] Length = 350 Score = 42.4 bits (99), Expect = 0.055, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 27/62 (43%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P ++ GP G GK+ LA+I S + ++ +LD LE D+L + Sbjct: 64 PLPHLLFSGPPGLGKTTLAHILSKEMNASLKITSGPALDKAANLAGILTSLESFDVLFID 123 Query: 123 DT 124 + Sbjct: 124 EI 125 >gi|182413522|ref|YP_001818588.1| ATPase central domain-containing protein [Opitutus terrae PB90-1] gi|177840736|gb|ACB74988.1| AAA ATPase central domain protein [Opitutus terrae PB90-1] Length = 448 Score = 42.4 bits (99), Expect = 0.055, Method: Composition-based stats. Identities = 37/184 (20%), Positives = 67/184 (36%), Gaps = 24/184 (13%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 +I GP G GK+ +A + ++ S R + + ++ + L + F Sbjct: 64 GSLIFYGPPGCGKTSIAEAIAQETNSRFVRVNAVMSNVAELREILHSARRLPQASTILFI 123 Query: 123 DTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 D H N + + L+ A T + V P L SR + + ++ Sbjct: 124 DE--LHRFNKSQQDLLLPDVEEGTVRLIGATTHNPGFYVNPP-LLSR---SHLFRLEPLS 177 Query: 175 DDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 + V+ K AD R++ D K+ A + + L A ++ + L L G Sbjct: 178 PAAVTGVLKKALADEERGLGARKVTADDKVLADLAVLCDGDLRRALNALEVL-VLGLPEG 236 Query: 228 MGIT 231 IT Sbjct: 237 GVIT 240 >gi|170049711|ref|XP_001858122.1| werner helicase interacting protein [Culex quinquefasciatus] gi|167871474|gb|EDS34857.1| werner helicase interacting protein [Culex quinquefasciatus] Length = 529 Score = 42.4 bits (99), Expect = 0.055, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 58/153 (37%), Gaps = 27/153 (17%) Query: 65 RVVILVGPSGSGKSCLANIWSD---KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 +I GP G GK+ LA+I + K + RF ++ ++ + D ++ V + +L Sbjct: 166 PSMIFWGPPGCGKTTLAHIIAAHCKKHENMRFVKLSATMSGVN-DVKEAVKVAKNELKFK 224 Query: 122 NDTQLF----HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 T LF H N + Q + LP + S P Sbjct: 225 RKTILFMDEIHRFNKLQQD----------------IFLPHVESGTVTLLGATTENPSFSL 268 Query: 178 LEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 ++ + R I ++K +++ +ER+L Sbjct: 269 NSALLSRC---RVIVLEKLAVEPMMKILERALP 298 >gi|6273572|emb|CAB60143.1| spastin protein orthologue [Mus musculus] Length = 504 Score = 42.4 bits (99), Expect = 0.055, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 30/50 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S +T F+ A SL S + + ++ Sbjct: 262 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 311 >gi|116670830|ref|YP_831763.1| recombination factor protein RarA [Arthrobacter sp. FB24] gi|116610939|gb|ABK03663.1| Recombination protein MgsA [Arthrobacter sp. FB24] Length = 474 Score = 42.4 bits (99), Expect = 0.055, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 65/173 (37%), Gaps = 23/173 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G+GK+ LA++ + S I + + + D+ T Sbjct: 84 LILWGPPGTGKTTLAHVIAKGPGRKFVELSAITAGVKDVRRVMDDALTARDLYKTT---T 140 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + +L+ A T S+ V P L + ++ + Sbjct: 141 VLFLDEIHRFNKAQQDALLPGVENRWVVLVAATTENPSFSVVSPL----LSRSLLLTLRP 196 Query: 173 PDDDFLEKVIVKMFAD-RQIFIDKKLAAYIVQRMER-SLVFAEKLVDKMDNLA 223 D +E ++ + AD R + +L+ + + R S A + + ++ A Sbjct: 197 LTDADIEGLVQRAVADPRGLNGKVQLSEEALAHLVRLSGGDARRALTALEAAA 249 >gi|313238059|emb|CBY13178.1| unnamed protein product [Oikopleura dioica] Length = 432 Score = 42.4 bits (99), Expect = 0.056, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + + ++ ++ I ++ E Sbjct: 166 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 217 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 218 ------MFNYARDHQ 226 >gi|319761904|ref|YP_004125841.1| aaa atpase central domain protein [Alicycliphilus denitrificans BC] gi|317116465|gb|ADU98953.1| AAA ATPase central domain protein [Alicycliphilus denitrificans BC] Length = 437 Score = 42.4 bits (99), Expect = 0.056, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 66/194 (34%), Gaps = 24/194 (12%) Query: 68 ILVGPSGSGKSCLANIWSDKSRSTRFS---------------NIAKSLDSILIDTRKPVL 112 IL GP G GK+ +A + ++ + S +A+S L+ R V Sbjct: 49 ILWGPPGVGKTTIARLMAEAFDAQFISISAVLGGVKDIRDAVQLAESAAGGLMPQRTIVF 108 Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 ++++ + + F + + A T S+ V L SR A V + Sbjct: 109 VDEVHRFNKSQQDAFLPH---VESGLFTFVGATTENPSFEVNSA-LLSR---AAVYVLQP 161 Query: 173 P-DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG-I 230 DD V+ I+ + ++ + ++ + A + I Sbjct: 162 LTSDDLKRIVVRAQDIQALPAIENEALERLIAYADGDARRLLNTLETLSVTAEQAKVETI 221 Query: 231 TRSLAAEVLKETQQ 244 T + +VL E + Sbjct: 222 TDAWLLQVLGERMR 235 >gi|297379642|gb|ADI34529.1| recombination factor protein RarA [Helicobacter pylori v225d] Length = 391 Score = 42.4 bits (99), Expect = 0.056, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 63/169 (37%), Gaps = 20/169 (11%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILI--------DTRKPVLLE 114 GP G GK+ LA I + F+ L+ + + + V ++ Sbjct: 38 PHAFFYGPPGVGKTSLAQIIAHALERPILLFNATDFKLEDLRLKLKNYQNTLLKPVVFID 97 Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 + L+ + I + D +L++ A T ++ + + SR + + +++ + Sbjct: 98 ETHRLNKTQQEFLLPI---MEKDHALILGASTQDPNYSLSHA-IRSR---SFIFELTPLN 150 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 L+ + K + I+ Y++ S A L++ +D A Sbjct: 151 KSDLDNLCAKALTLLKKQIEPSAKTYLLNN---SAGDARALLNLLDLSA 196 >gi|258563624|ref|XP_002582557.1| 26S protease regulatory subunit 6A-B [Uncinocarpus reesii 1704] gi|237908064|gb|EEP82465.1| 26S protease regulatory subunit 6A-B [Uncinocarpus reesii 1704] Length = 462 Score = 42.4 bits (99), Expect = 0.056, Method: Composition-based stats. Identities = 29/199 (14%), Positives = 67/199 (33%), Gaps = 53/199 (26%) Query: 45 VHSAIEQAVRLIDS--WP------------SWPSRVVILVGPSGSGKSCLANIWSDKSRS 90 V +Q L+++ WP P ++ GP G+GK+ LA + ++ + Sbjct: 210 VGGLNKQIEELVEAIVWPMKEADRFKKIGIKAPKGALM-YGPPGTGKTLLARACAAQTDA 268 Query: 91 TRFSNIAKSLDSILIDTRKPVL----------------LEDIDLLDFN------------ 122 T L + I ++ ++++D + Sbjct: 269 TFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPAIIFIDELDAIGTKRFDSEKSGDREV 328 Query: 123 DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDLCS-RLKAATVVKISLPDDDFL 178 + ++N D ++ A L L S RL ++ LP+++ Sbjct: 329 QRTMLELLNQLDGFASDDRIKVLAATNRVDVLDPAL--LRSGRLD--RKIEFPLPNEEAR 384 Query: 179 EKVIVKMFADRQIFIDKKL 197 +++ R++ +D+ + Sbjct: 385 AQIL--KIHSRKMTVDENV 401 >gi|302391510|ref|YP_003827330.1| recombination protein MgsA [Acetohalobium arabaticum DSM 5501] gi|302203587|gb|ADL12265.1| Recombination protein MgsA [Acetohalobium arabaticum DSM 5501] Length = 439 Score = 42.4 bits (99), Expect = 0.056, Method: Composition-based stats. Identities = 36/202 (17%), Positives = 80/202 (39%), Gaps = 33/202 (16%) Query: 67 VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSI------------LIDTRKPVL 112 +IL GP G+GK+ LA I ++ S R + + + I + T+ + Sbjct: 55 LILYGPPGTGKTTLAMIIANTTSSEFERLNAVTSGIKDIREIIKQAKERRRMYQTKTILF 114 Query: 113 LEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++I + + L + +L+ A T + V P L SR + V ++ Sbjct: 115 IDEIHRFNKSQQDALL----PAVEKGIIILIGATTENPYFEVNSP-LVSR---SRVFELK 166 Query: 172 LPDDDFLEKVIVKMFADRQIFIDK---KLAAYIVQRM-ERSLVFAEKLVDKMDNLALSRG 227 D L+++++K D + + + ++ + E + A ++ ++ L+ Sbjct: 167 PLTKDNLKQILLKALDDTEQGLGDYKVDVTQEALEHIAEMANGDARIALNALELAVLTTP 226 Query: 228 ------MGITRSLAAEVLKETQ 243 IT +A E +++ Sbjct: 227 ENGTGIKEITLKVAEESIQQRS 248 >gi|301300882|ref|ZP_07207054.1| recombination factor protein RarA [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851481|gb|EFK79193.1| recombination factor protein RarA [Lactobacillus salivarius ACS-116-V-Col5a] Length = 423 Score = 42.4 bits (99), Expect = 0.056, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 55/134 (41%), Gaps = 20/134 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSR-STRFSNIA--------KSLDSILIDTRKPVLLEDID 117 +IL GP G+GK+ +A+ + ++ + R N A + ++ +LL++I Sbjct: 41 MILYGPPGTGKTSIASAIAGSTKYAFRKMNAATDSKKKLEQVVEEAKFSGTVILLLDEIH 100 Query: 118 LLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 L H+ + +L+ A T + P + SR + ++ ++ Sbjct: 101 RLTKPKQDFLLPHL-----EDGHIILIGATTENPYISIN-PAIRSR---TQIFEVHPLNE 151 Query: 176 DFLEKVIVKMFADR 189 D + + I + D+ Sbjct: 152 DDIIQAINRAITDK 165 >gi|302660686|ref|XP_003022019.1| hypothetical protein TRV_03836 [Trichophyton verrucosum HKI 0517] gi|291185945|gb|EFE41401.1| hypothetical protein TRV_03836 [Trichophyton verrucosum HKI 0517] Length = 461 Score = 42.4 bits (99), Expect = 0.056, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 67/199 (33%), Gaps = 53/199 (26%) Query: 45 VHSAIEQAVRLIDS--WP------------SWPSRVVILVGPSGSGKSCLANIWSDKSRS 90 V +Q L+++ WP P ++ GP G+GK+ LA + ++ + Sbjct: 209 VGGLNKQIEELLEAIVWPMKEADRFKKIGIKAPKGALM-YGPPGTGKTLLARACAAQTEA 267 Query: 91 TRFSNIAKSLDSILIDTRKPVL----------------LEDIDLLDFN------------ 122 T L + I ++ ++++D + Sbjct: 268 TFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPAIIFIDELDAIGTKRFDSEKSGDREV 327 Query: 123 DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDLCS-RLKAATVVKISLPDDDFL 178 + ++N D ++ A L L S RL ++ LP+++ Sbjct: 328 QRTMLELLNQLDGFASDDRVKVLAATNRIDVLDPAL--LRSGRLD--RKIEFPLPNEEAR 383 Query: 179 EKVIVKMFADRQIFIDKKL 197 +++ R++ +D K+ Sbjct: 384 AQIL--RIHSRKMTVDDKV 400 >gi|261405433|ref|YP_003241674.1| AAA ATPase central domain-containing protein [Paenibacillus sp. Y412MC10] gi|261281896|gb|ACX63867.1| AAA ATPase central domain protein [Paenibacillus sp. Y412MC10] Length = 435 Score = 42.4 bits (99), Expect = 0.056, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 67/182 (36%), Gaps = 35/182 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDID---LLDF 121 ++L GP G GK+ LA+I S +++ R + + ++ + ++E L Sbjct: 54 ILLYGPPGCGKTTLAHIISQQTKGHFVRLNAVEATVKDVRE------VIEQAQSNRSLYG 107 Query: 122 NDTQLF----HIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 T LF H NS Q + +++ T + L SR +T+ ++ Sbjct: 108 TKTILFLDEVHRFNSSRQDALLPAVENGTIIFIGATTENPFHYVNGALMSR---STLFQL 164 Query: 171 SLPDDDFLEKVIVKMF--ADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 D + + D+ + D++ +I + ++ ++ A Sbjct: 165 QPLTKDHSMIAMRRALIDQDKGLGFMDLKADEEALEHIAAMAN---GDIRRALNALELAA 221 Query: 224 LS 225 ++ Sbjct: 222 MT 223 >gi|332969682|gb|EGK08698.1| cell division protein FtsH [Desmospora sp. 8437] Length = 455 Score = 42.4 bits (99), Expect = 0.057, Method: Composition-based stats. Identities = 33/216 (15%), Positives = 75/216 (34%), Gaps = 49/216 (22%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILIDTRKP 110 ++L GP G GK+ +A + + + S N+ + ++ Sbjct: 216 ILLYGPPGCGKTFIARATAGECNAHFISLDIHRILDMYIGQSEKNLHELFETARRHAPTI 275 Query: 111 VLLEDIDLLDF--NDTQLFH-------IINSIH----QYDSSLLMTARTFP--VSWGVCL 155 + ++++D + Q H ++N + L++ A P V + Sbjct: 276 IFIDELDAIGGARQQGQSAHSRALTNQLLNELDGIHSDNRDILVLGATNTPWFVDSALRR 335 Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY--IVQRMER-SLVFA 212 P R V PD + +++ ++ + Y + ++ +R S Sbjct: 336 P---GRFDRVLFVA--PPDLEARVEILHIHLKEK----PVEEIDYVKVAKKTDRFSGADL 386 Query: 213 EKLVDKMDNLALS------RGMGITRSLAAEVLKET 242 +VD ++A+ + IT S+ + +KE Sbjct: 387 RAVVDTAADMAIREAMKTGQKRPITTSMLVQAVKEV 422 >gi|302688501|ref|XP_003033930.1| hypothetical protein SCHCODRAFT_81752 [Schizophyllum commune H4-8] gi|300107625|gb|EFI99027.1| hypothetical protein SCHCODRAFT_81752 [Schizophyllum commune H4-8] Length = 426 Score = 42.4 bits (99), Expect = 0.057, Method: Composition-based stats. Identities = 22/167 (13%), Positives = 58/167 (34%), Gaps = 38/167 (22%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + ++ GP G+GK+ LA + ++++ SL + I ++ Sbjct: 206 PPKGALMYGPPGTGKTLLARACAAQTQACYLKLAGPSLVQMFIGDGAKLVRDAFALAKEK 265 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151 ++++D + + ++N + + ++ A Sbjct: 266 APAIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRIDIL 325 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L L S RL ++ LP++ +++ R++ + + Sbjct: 326 DPAL--LRSGRLD--RKIEFPLPNETARSRILE--IHSRKMSVSDDV 366 >gi|123911070|sp|Q05AS3|SPAST_XENTR RecName: Full=Spastin gi|116284104|gb|AAI23974.1| spg4 protein [Xenopus (Silurana) tropicalis] Length = 603 Score = 42.4 bits (99), Expect = 0.057, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 30/50 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S +T F+ A SL S + + ++ Sbjct: 361 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 410 >gi|18310929|ref|NP_562863.1| Holliday junction DNA helicase B [Clostridium perfringens str. 13] gi|20140041|sp|Q8XJ14|RUVB_CLOPE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|18145611|dbj|BAB81653.1| holliday junction DNA helicase [Clostridium perfringens str. 13] Length = 346 Score = 42.4 bits (99), Expect = 0.057, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 64/184 (34%), Gaps = 41/184 (22%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 VIL GP G GK+ LANI +++ +++ L D+L ++ Sbjct: 56 VILYGPPGLGKTTLANIIANEMGGNLKITSGPAIERAGDLAAILTTLNTNDVLFIDEI-- 113 Query: 127 FHIINSIHQY------DSSLL--MTAR-TFPVSWGVCLPD------------LCS--RLK 163 H +N + + +L + + S + LP L S R + Sbjct: 114 -HRLNRSVEEILYPAMEDYVLDIIIGKGAASKSIRLDLPKFTLIGATTRIGMLSSPLRDR 172 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKK--------------LAAYIVQRMERSL 209 + + D+ L+++I++ I ++ +A +++R+ R Sbjct: 173 LGVLCSMEYYTDEQLKEIIIRSAEILGCHITEEGAFEIAKRSRGTPRIANRLLKRV-RDF 231 Query: 210 VFAE 213 Sbjct: 232 AEVL 235 >gi|219667427|ref|YP_002457862.1| ABC transporter [Desulfitobacterium hafniense DCB-2] gi|219537687|gb|ACL19426.1| ABC transporter related [Desulfitobacterium hafniense DCB-2] Length = 232 Score = 42.4 bits (99), Expect = 0.057, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 16/61 (26%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123 + + L+GPSGSGKS L +I L ++ T V ++DID+ ++ Sbjct: 33 GQFLALLGPSGSGKSTLLSI----------------LGALNPPTEGKVFIDDIDIYGLDE 76 Query: 124 T 124 Sbjct: 77 E 77 >gi|327293497|ref|XP_003231445.1| hypothetical protein TERG_08231 [Trichophyton rubrum CBS 118892] gi|326466561|gb|EGD92014.1| hypothetical protein TERG_08231 [Trichophyton rubrum CBS 118892] Length = 604 Score = 42.4 bits (99), Expect = 0.057, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 39/115 (33%), Gaps = 25/115 (21%) Query: 63 PSRVVILV-GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS---------ILIDTRKPVL 112 P R L GP G GK+ L + + S + + R VL Sbjct: 298 PYRRGYLFSGPPGCGKTSLCFAVAGLLGLKIYVANLSSPNLTEEGLASLFATLPRRCIVL 357 Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 LEDID ++L Q + + P + SRLKA+TV Sbjct: 358 LEDIDTAGITKSRL--------QAGAP----SSISPAAQNAST---QSRLKASTV 397 >gi|296224143|ref|XP_002757920.1| PREDICTED: spastin isoform 2 [Callithrix jacchus] Length = 584 Score = 42.4 bits (99), Expect = 0.057, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 30/50 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S +T F+ A SL S + + ++ Sbjct: 342 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 391 >gi|289450847|ref|YP_003475226.1| Holliday junction DNA helicase RuvB [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185394|gb|ADC91819.1| Holliday junction DNA helicase RuvB [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 372 Score = 42.4 bits (99), Expect = 0.057, Method: Composition-based stats. Identities = 39/202 (19%), Positives = 76/202 (37%), Gaps = 31/202 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G GK+ LA I + + +S +++ L+ D+L ++ Sbjct: 91 VLLYGPPGLGKTTLAGIIAGEMKSNLRITSGPAIEKAGDLAAILTNLQPRDVLFIDEI-- 148 Query: 127 FHIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLC--------------S---R 161 H +N + LM + P + V L DL S R Sbjct: 149 -HRLNHSVEEILYPAMEDRVLDLMIGK-GPSARSVRL-DLAPFTLVGATTKAGNLSAPLR 205 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-D 220 + + ++ L D L ++ + I I ++ + +R + A +L+ ++ D Sbjct: 206 DRFGVINRLELYDVKDLAAILKRDAEIMHIGITEEAVTCLAERSRGTPRIAIRLLRRLRD 265 Query: 221 NLALSRGMGITRSLAAEVLKET 242 ++ +TR++A LK Sbjct: 266 FAQVASTSTVTRTIAENGLKAL 287 >gi|253701023|ref|YP_003022212.1| IstB domain protein ATP-binding protein [Geobacter sp. M21] gi|253701486|ref|YP_003022675.1| IstB domain protein ATP-binding protein [Geobacter sp. M21] gi|253702650|ref|YP_003023839.1| IstB domain protein ATP-binding protein [Geobacter sp. M21] gi|251775873|gb|ACT18454.1| IstB domain protein ATP-binding protein [Geobacter sp. M21] gi|251776336|gb|ACT18917.1| IstB domain protein ATP-binding protein [Geobacter sp. M21] gi|251777500|gb|ACT20081.1| IstB domain protein ATP-binding protein [Geobacter sp. M21] Length = 245 Score = 42.4 bits (99), Expect = 0.057, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 57/143 (39%), Gaps = 23/143 (16%) Query: 32 FPRCLGISRDDLLVHSAIEQAV-RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS-- 88 FP + + E + RL D VI+VG +G+GK+ LA + +S Sbjct: 66 FPVDKDLDSFEFSDSPVNEMQLKRLYDGGFLGDHTNVIMVGGTGTGKTHLAISIARQSIR 125 Query: 89 -----RSTRFSNIAKSLDSILIDTRKPVLLEDI---DLLDFND-----------TQLFHI 129 R ++ L+ +D R L E + DL+ ++ LFH+ Sbjct: 126 NDRKARFFNVLDLVNQLEQEKLDGRGGKLAEQLARHDLVILDELGYLPFSKNGGQLLFHL 185 Query: 130 INSIHQYDSSLLMTARTFPVSWG 152 I+ +++ +SL++T W Sbjct: 186 ISKLYER-TSLIITTNLTFGEWP 207 >gi|148264882|ref|YP_001231588.1| AAA family ATPase, CDC48 subfamily protein [Geobacter uraniireducens Rf4] gi|146398382|gb|ABQ27015.1| AAA family ATPase, CDC48 subfamily [Geobacter uraniireducens Rf4] Length = 701 Score = 42.4 bits (99), Expect = 0.057, Method: Composition-based stats. Identities = 22/168 (13%), Positives = 61/168 (36%), Gaps = 43/168 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P + ++L GP G+GK+ +A ++++ ++ +S + + + Sbjct: 208 PPKGLLLHGPPGTGKTLIARAVANETNASFYSVSGPEIIHKFYGESEAKLRNLFEEARKN 267 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + L++ID + QL +++ + + +++ A P + Sbjct: 268 APSIIFLDEIDAIAPKREQVTGEVEKRVVAQLLALMDGLAERGQVIVIGATNIPNALDQA 327 Query: 155 LP-----DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L D ++I +PD + +++ R + + + Sbjct: 328 LRRPGRFD--------RELEIGIPDVNGRMEILD--IHTRGMPLTDDV 365 >gi|124266314|ref|YP_001020318.1| recombination factor protein RarA [Methylibium petroleiphilum PM1] gi|124259089|gb|ABM94083.1| Recombination protein MgsA [Methylibium petroleiphilum PM1] Length = 443 Score = 42.4 bits (99), Expect = 0.057, Method: Composition-based stats. Identities = 31/189 (16%), Positives = 62/189 (32%), Gaps = 35/189 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS-------------NIAKSLDSILIDTRKPVLL 113 +IL GP G+GK+ LA + + + + + ++ + + R V + Sbjct: 58 MILWGPPGTGKTTLARLMAHAFDAQFIAISAVLGGVKDIRDAVEQAQVAQGMGRRTIVFV 117 Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 +++ + F + + A T S+ V L SR ATV + Sbjct: 118 DEVHRFNKAQQDAFLPH---VESGLFTFIGATTENPSFEVNSA-LLSR---ATVHVLRPL 170 Query: 174 DDDFLEKVIVK------------MFADRQIFIDKKLAAYIVQ---RMERSLVFAEKLVDK 218 DD L +++ + R I A ++ + R ++ + Sbjct: 171 DDSELAELLERGRALLNGSPLSDAARTRLIAYADGDARRLLNTYENIARMAGAVLEIDEA 230 Query: 219 MDNLALSRG 227 AL Sbjct: 231 FLEQALGEQ 239 >gi|332227159|ref|XP_003262759.1| PREDICTED: spastin isoform 2 [Nomascus leucogenys] Length = 584 Score = 42.4 bits (99), Expect = 0.058, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 30/50 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S +T F+ A SL S + + ++ Sbjct: 342 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 391 >gi|329926789|ref|ZP_08281197.1| ATPase, AAA family protein [Paenibacillus sp. HGF5] gi|328938989|gb|EGG35357.1| ATPase, AAA family protein [Paenibacillus sp. HGF5] Length = 435 Score = 42.4 bits (99), Expect = 0.058, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 67/182 (36%), Gaps = 35/182 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDID---LLDF 121 ++L GP G GK+ LA+I S +++ R + + S+ + ++E L Sbjct: 54 ILLYGPPGCGKTTLAHIISQQTKGHFVRLNAVEASVKDVRE------VIEQAQSNRSLYG 107 Query: 122 NDTQLF----HIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 T LF H NS Q + +++ T + L SR +T+ ++ Sbjct: 108 TKTILFLDEVHRFNSSRQDALLPAVENGTIIFIGATTENPFHYVNGALMSR---STLFQL 164 Query: 171 SLPDDDFLEKVIVKMF--ADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 D + + D+ + D++ +I + ++ ++ A Sbjct: 165 QPLTKDHSMIAMRRALTDQDKGLGFMDLKADEEALEHIAAMAN---GDIRRALNALELAA 221 Query: 224 LS 225 ++ Sbjct: 222 MT 223 >gi|315924088|ref|ZP_07920314.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC 23263] gi|315622490|gb|EFV02445.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC 23263] Length = 317 Score = 42.4 bits (99), Expect = 0.058, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 6/70 (8%) Query: 77 KSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY 136 KS LA SLD ID ++ +D+D +ND L++++ + Sbjct: 48 KSHLATAV-----GFAIDEEKLSLDDKPIDAFADIIPDDVDP-RWNDVTLYNLMTMTSGH 101 Query: 137 DSSLLMTART 146 LMT+ Sbjct: 102 GEPFLMTSDR 111 >gi|302499390|ref|XP_003011691.1| mitochondrial chaperone ATPase (Bcs1), putative [Arthroderma benhamiae CBS 112371] gi|291175243|gb|EFE31051.1| mitochondrial chaperone ATPase (Bcs1), putative [Arthroderma benhamiae CBS 112371] Length = 601 Score = 42.4 bits (99), Expect = 0.058, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 39/115 (33%), Gaps = 25/115 (21%) Query: 63 PSRVVILV-GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS---------ILIDTRKPVL 112 P R L GP G GK+ L + + S + + R VL Sbjct: 295 PYRRGYLFSGPPGCGKTSLCFAVAGLLGLKIYVANLSSPNLTEEGLASLFATLPRRCIVL 354 Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 LEDID ++L Q + + P + SRLKA+TV Sbjct: 355 LEDIDTAGITKSRL--------QAGAP----SSISPAAQNAST---QSRLKASTV 394 >gi|256078592|ref|XP_002575579.1| 26S protease regulatory subunit 6a [Schistosoma mansoni] gi|238660820|emb|CAZ31812.1| 26S protease regulatory subunit 6a, putative [Schistosoma mansoni] Length = 365 Score = 42.4 bits (99), Expect = 0.058, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + +++ST L + I ++ + Sbjct: 208 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRD 259 >gi|53804168|ref|YP_114220.1| recombination factor protein RarA [Methylococcus capsulatus str. Bath] gi|53757929|gb|AAU92220.1| ATPase, AAA family [Methylococcus capsulatus str. Bath] Length = 435 Score = 42.4 bits (99), Expect = 0.058, Method: Composition-based stats. Identities = 31/194 (15%), Positives = 70/194 (36%), Gaps = 27/194 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS-------------NIAKSLDSILIDTRKPVLL 113 +I GP G+GK+ LA + + + + +A+++ R + + Sbjct: 46 MIFWGPPGTGKTTLARLVARHADAEFLPVSAVLSGVKEIREALARAVQFKAAGRRAILFV 105 Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 +++ + + F + + + A T S+ V L SR A V + Sbjct: 106 DEVHRFNKSQQDAFLAH---VEDGTVSFIGATTENPSFEVNSA-LLSR---ARVYVLKAL 158 Query: 174 DDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 + L VI + +D R + + + V+ + L++ +L + Sbjct: 159 TEADLLGVIDRALSDAERGLGGRGLNMSDPVRMAYVRAADGDARRLLNLLEITADLLDAG 218 Query: 227 GMGITRSLAAEVLK 240 ++ +A +VL Sbjct: 219 QTVVSEEVARQVLA 232 >gi|261415680|ref|YP_003249363.1| AAA ATPase central domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372136|gb|ACX74881.1| AAA ATPase central domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326489|gb|ADL25690.1| ATPase, AAA family protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 431 Score = 42.4 bits (99), Expect = 0.058, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 66/195 (33%), Gaps = 30/195 (15%) Query: 65 RVVILVGPSGSGKSCLANIWSDKS--RSTRFSNIA---KSLDSILIDTR--------KPV 111 +I GP G GK+ LA++ + R S +A K + +L D R + Sbjct: 40 PSMIFWGPPGCGKTSLAHVIRQHTKKRFVALSAVASGVKEVKEVLADARQMKKAFMDTIL 99 Query: 112 LLEDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 +++I + L + + L+ A T + V L SR + + Sbjct: 100 FIDEIHRFNKGQQDALL----GAVEDGTVTLIGATTENPGFEVNGA-LLSRCQLILFAPL 154 Query: 171 SLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 S D L +I D R + ++ + ++ + E F ++ + Sbjct: 155 SKED---LRTLIFSALRDHPRGLQLKDVEVEDSVVDKLIAQSEGDARFLLNQLEWIGKN- 210 Query: 224 LSRGMGITRSLAAEV 238 L I L E Sbjct: 211 LGDNKKIDEKLLEEF 225 >gi|194037953|ref|XP_001924550.1| PREDICTED: ATPase WRNIP1 [Sus scrofa] Length = 503 Score = 42.4 bits (99), Expect = 0.058, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 16/83 (19%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA+I ++ S+ ++ + K + D+ N+ Sbjct: 100 PSLILWGPPGCGKTTLAHIIANNSKKHSI-----RFVTLSATSAKTTDVRDVIKQAQNEK 154 Query: 125 QLF-----------HIINSIHQY 136 F H N Q Sbjct: 155 SFFKRKTILFIDEIHRFNKSQQD 177 >gi|281485591|ref|NP_001102172.2| spastin [Rattus norvegicus] gi|226694298|sp|B2RYN7|SPAST_RAT RecName: Full=Spastin gi|187469086|gb|AAI66846.1| Spast protein [Rattus norvegicus] Length = 581 Score = 42.4 bits (99), Expect = 0.058, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 30/50 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S +T F+ A SL S + + ++ Sbjct: 339 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 388 >gi|73980101|ref|XP_862831.1| PREDICTED: similar to spastin isoform 2 isoform 2 [Canis familiaris] Length = 592 Score = 42.4 bits (99), Expect = 0.058, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 30/50 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S +T F+ A SL S + + ++ Sbjct: 350 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 399 >gi|326514984|dbj|BAJ99853.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 826 Score = 42.4 bits (99), Expect = 0.059, Method: Composition-based stats. Identities = 26/164 (15%), Positives = 57/164 (34%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP G+GK+ LA + +S + N+ K Sbjct: 269 PPKGILLYGPPGTGKTLLARAIAAESGANFVVINGPEIMSMMAGQSEDNLRKVFAQAEAQ 328 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + N QL +++ + +++ A P S Sbjct: 329 APSIIFMDEIDAIAPNREKTRGEVERRVVSQLLTLMDGLCPRAQVMVIGATNRPNSIDPA 388 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L R + + I +PD+ +++ D + + + Sbjct: 389 LR----RFGRFDKEIDIGVPDEVGRLEILRIHSKD--MPLSDDV 426 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 20/38 (52%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 PSR V+L GP G GK+ LA + + ++ S L Sbjct: 543 PSRGVLLYGPPGCGKTLLAKAIARECKANFISVKGPEL 580 >gi|323346540|gb|EGA80827.1| Rpt5p [Saccharomyces cerevisiae Lalvin QA23] Length = 382 Score = 42.4 bits (99), Expect = 0.059, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 54/160 (33%), Gaps = 38/160 (23%) Query: 70 VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113 GP G+GK+ LA + ++ +T A L + I ++ + Sbjct: 169 YGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFI 228 Query: 114 EDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSWGVCLPDL 158 +++D + + ++N + D ++ A L L Sbjct: 229 DELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPAL--L 286 Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 S RL ++ LP +D +++ R++ D + Sbjct: 287 RSGRLD--RKIEFPLPSEDSRAQILQ--IHSRKMTTDDDI 322 >gi|297537214|ref|YP_003672983.1| IstB domain-containing protein ATP-binding protein [Methylotenera sp. 301] gi|297538441|ref|YP_003674210.1| IstB domain-containing protein ATP-binding protein [Methylotenera sp. 301] gi|297539655|ref|YP_003675424.1| IstB domain-containing protein ATP-binding protein [Methylotenera sp. 301] gi|297539802|ref|YP_003675571.1| IstB domain-containing protein ATP-binding protein [Methylotenera sp. 301] gi|297256561|gb|ADI28406.1| IstB domain protein ATP-binding protein [Methylotenera sp. 301] gi|297257788|gb|ADI29633.1| IstB domain protein ATP-binding protein [Methylotenera sp. 301] gi|297259002|gb|ADI30847.1| IstB domain protein ATP-binding protein [Methylotenera sp. 301] gi|297259149|gb|ADI30994.1| IstB domain protein ATP-binding protein [Methylotenera sp. 301] Length = 241 Score = 42.4 bits (99), Expect = 0.059, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 21/113 (18%) Query: 65 RVVILVGPSGSGKSCLANIW----SDKSRSTRFSNIAKSLDSILID-------------T 107 R +I VG G+GK+ LA+ + K RF N+ ++ + +D Sbjct: 99 RNIIFVGGPGTGKTHLASAIGVDAATKGARVRFYNVLDLVNQLELDKDQQKHKLAQQLAK 158 Query: 108 RKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 V+L+++ L F+ LFH+I+ +H+ +S+++T WG D Sbjct: 159 YDLVILDELGYLPFSQKGGALLFHLISQLHE-QTSIIITTNLAFSEWGKLFAD 210 >gi|295706728|ref|YP_003599803.1| holliday junction DNA helicase RuvB [Bacillus megaterium DSM 319] gi|294804387|gb|ADF41453.1| holliday junction DNA helicase RuvB [Bacillus megaterium DSM 319] Length = 333 Score = 42.4 bits (99), Expect = 0.059, Method: Composition-based stats. Identities = 41/202 (20%), Positives = 77/202 (38%), Gaps = 29/202 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G GK+ LA I +++ + +++ LE D+L ++ Sbjct: 56 VLLYGPPGLGKTTLATIIANEMGVQIRTTSGPAIERPGDLAAVLTSLEPGDVLFIDEI-- 113 Query: 127 FHIINSIHQ-------YDSSLLMTARTFPVSWGVCLPD---------------LCS--RL 162 H +N + D L + P + V L D L S R Sbjct: 114 -HRLNRSVEEVLYPAMEDFCLDIVIGKGPSARSVRL-DLPPFTLVGATTRAGLLSSPLRD 171 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-DN 221 + + ++ ++ L ++ + A + ID+K + +R + A +L+ ++ D Sbjct: 172 RFGVLSRLEYYQEEDLASIVERTAAILDVEIDEKATFEMARRARGTPRIANRLLRRVRDF 231 Query: 222 LALSRGMGITRSLAAEVLKETQ 243 + IT LA E L+ Q Sbjct: 232 AQVKGDGAITERLANEALEMLQ 253 >gi|226694318|sp|Q719N1|SPAST_PIG RecName: Full=Spastin Length = 613 Score = 42.4 bits (99), Expect = 0.059, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 30/50 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S +T F+ A SL S + + ++ Sbjct: 371 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 420 >gi|222629017|gb|EEE61149.1| hypothetical protein OsJ_15108 [Oryza sativa Japonica Group] Length = 588 Score = 42.4 bits (99), Expect = 0.059, Method: Composition-based stats. Identities = 38/203 (18%), Positives = 74/203 (36%), Gaps = 36/203 (17%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110 R V+LVGP G+GK+ LA + ++ FS A + + Sbjct: 335 RGVLLVGPPGTGKTLLARAVAGEAGIPFFSVSASEFVEVFVGRGAARVRDLFKEAKEAAP 394 Query: 111 --VLLEDIDLLDF-------ND-----TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL- 155 + ++++D + ++ QL ++ ++M A P + L Sbjct: 395 SIIFIDELDAVGGSRGRSFNDERDQTLNQLLTEMDGFDSDMKVIVMAATNRPKALDPALC 454 Query: 156 -PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 P SR V + +PD + ++ D + D ++ +V + LV A Sbjct: 455 RPGRFSR-----KVLVGVPDLEGRRNILAVHLRDVPLEEDPEIICDLVASLTPGLVGA-D 508 Query: 215 LVDKMDNLALSRGMGITRSLAAE 237 L + ++ AL ++A E Sbjct: 509 LANIVNEAALLAARRGGNTVARE 531 >gi|194220831|ref|XP_001918126.1| PREDICTED: similar to spastin [Equus caballus] Length = 616 Score = 42.4 bits (99), Expect = 0.059, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 30/50 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S +T F+ A SL S + + ++ Sbjct: 374 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 423 >gi|195427309|ref|XP_002061719.1| GK17038 [Drosophila willistoni] gi|194157804|gb|EDW72705.1| GK17038 [Drosophila willistoni] Length = 844 Score = 42.4 bits (99), Expect = 0.059, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 28/110 (25%) Query: 47 SAIEQAVRLIDSWPSWPSRV--------------VILVGPSGSGKSCLANIWSDKSRSTR 92 +E V +++ WPSR V+L GP G+GK+ L Sbjct: 615 PGLELVVGVLEEVLMWPSRYPTIFNASPLRNQAGVLLYGPPGTGKTYL------------ 662 Query: 93 FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLM 142 S +A S + +I + P LL + ++ + ++ N +L Sbjct: 663 VSQLATSWNLRIISVKGPELL--AKYIGQSEENVRNLFNRARSAKPCVLF 710 >gi|195055733|ref|XP_001994767.1| GH14249 [Drosophila grimshawi] gi|193892530|gb|EDV91396.1| GH14249 [Drosophila grimshawi] Length = 392 Score = 42.4 bits (99), Expect = 0.059, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 58/174 (33%), Gaps = 49/174 (28%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P R V+L GP G GK+ LA ++++ + + + ++ Sbjct: 172 PPRGVLLYGPPGCGKTMLAKAVANQTTAAFIHVVGSEFVQKYLGEGPRMVRDIFRLAKQN 231 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147 +++ID + L ++N + + ++M Sbjct: 232 APSVIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDETTNIKVIMATNRADTL 291 Query: 148 -PVSW---------GVCLPDLCS-RLK-AATVVKISLPDDDFLEKVIVKMFADR 189 P LPD RL KI+L +D LE++I + ADR Sbjct: 292 DPALLRPGRLDRKIEFPLPDRRQKRLVFTTITAKINLAEDVDLEELIAR--ADR 343 >gi|40806170|ref|NP_955468.1| spastin isoform 2 [Homo sapiens] gi|114576881|ref|XP_515388.2| PREDICTED: spastin isoform 2 [Pan troglodytes] gi|5689503|dbj|BAA83035.1| KIAA1083 protein [Homo sapiens] gi|119620867|gb|EAX00462.1| spastin, isoform CRA_b [Homo sapiens] gi|152012808|gb|AAI50261.1| Spastin [Homo sapiens] gi|168269668|dbj|BAG09961.1| spastin [synthetic construct] gi|311348859|gb|ADP91575.1| spastin [Homo sapiens] gi|311348862|gb|ADP91577.1| spastin [Homo sapiens] gi|311348865|gb|ADP91579.1| spastin [Homo sapiens] gi|311348868|gb|ADP91581.1| spastin [Homo sapiens] gi|311348871|gb|ADP91583.1| spastin [Homo sapiens] gi|311348874|gb|ADP91585.1| spastin [Homo sapiens] gi|311348877|gb|ADP91587.1| spastin [Homo sapiens] gi|311348880|gb|ADP91589.1| spastin [Homo sapiens] gi|311348883|gb|ADP91591.1| spastin [Homo sapiens] gi|311348886|gb|ADP91593.1| spastin [Homo sapiens] gi|311348889|gb|ADP91595.1| spastin [Homo sapiens] gi|311348892|gb|ADP91597.1| spastin [Homo sapiens] gi|311348895|gb|ADP91599.1| spastin [Homo sapiens] gi|311348898|gb|ADP91601.1| spastin [Homo sapiens] gi|311348901|gb|ADP91603.1| spastin [Homo sapiens] gi|311348904|gb|ADP91605.1| spastin [Homo sapiens] gi|311348907|gb|ADP91607.1| spastin [Homo sapiens] gi|311348910|gb|ADP91609.1| spastin [Homo sapiens] gi|311348913|gb|ADP91611.1| spastin [Homo sapiens] gi|311348916|gb|ADP91613.1| spastin [Homo sapiens] gi|311348919|gb|ADP91615.1| spastin [Homo sapiens] gi|311348922|gb|ADP91617.1| spastin [Homo sapiens] gi|311348925|gb|ADP91619.1| spastin [Homo sapiens] gi|311348928|gb|ADP91621.1| spastin [Homo sapiens] gi|311348931|gb|ADP91623.1| spastin [Homo sapiens] gi|311348934|gb|ADP91625.1| spastin [Homo sapiens] gi|311348937|gb|ADP91627.1| spastin [Homo sapiens] gi|311348940|gb|ADP91629.1| spastin [Homo sapiens] gi|311348943|gb|ADP91631.1| spastin [Homo sapiens] gi|311348946|gb|ADP91633.1| spastin [Homo sapiens] gi|311348949|gb|ADP91635.1| spastin [Homo sapiens] gi|311348952|gb|ADP91637.1| spastin [Homo sapiens] gi|311348955|gb|ADP91639.1| spastin [Homo sapiens] gi|311348958|gb|ADP91641.1| spastin [Homo sapiens] gi|311348961|gb|ADP91643.1| spastin [Homo sapiens] gi|311348964|gb|ADP91645.1| spastin [Homo sapiens] gi|311348967|gb|ADP91647.1| spastin [Homo sapiens] gi|311348970|gb|ADP91649.1| spastin [Homo sapiens] gi|311348973|gb|ADP91651.1| spastin [Homo sapiens] gi|311348976|gb|ADP91653.1| spastin [Homo sapiens] Length = 584 Score = 42.4 bits (99), Expect = 0.059, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 30/50 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S +T F+ A SL S + + ++ Sbjct: 342 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 391 >gi|69247927|ref|ZP_00604543.1| AAA ATPase, central region [Enterococcus faecium DO] gi|257880292|ref|ZP_05659945.1| AAA ATPase [Enterococcus faecium 1,230,933] gi|257882146|ref|ZP_05661799.1| AAA ATPase [Enterococcus faecium 1,231,502] gi|257885338|ref|ZP_05664991.1| AAA ATPase [Enterococcus faecium 1,231,501] gi|257894205|ref|ZP_05673858.1| AAA ATPase [Enterococcus faecium 1,231,408] gi|258614762|ref|ZP_05712532.1| recombination factor protein RarA [Enterococcus faecium DO] gi|260562406|ref|ZP_05832920.1| AAA ATPase [Enterococcus faecium C68] gi|293556301|ref|ZP_06674886.1| ATPase, AAA family [Enterococcus faecium E1039] gi|293560717|ref|ZP_06677196.1| ATPase, AAA family [Enterococcus faecium E1162] gi|293566152|ref|ZP_06678555.1| ATPase, AAA family [Enterococcus faecium E1071] gi|294618776|ref|ZP_06698303.1| ATPase, AAA family [Enterococcus faecium E1679] gi|294622228|ref|ZP_06701288.1| ATPase, AAA family [Enterococcus faecium U0317] gi|68194629|gb|EAN09116.1| AAA ATPase, central region [Enterococcus faecium DO] gi|257814520|gb|EEV43278.1| AAA ATPase [Enterococcus faecium 1,230,933] gi|257817804|gb|EEV45132.1| AAA ATPase [Enterococcus faecium 1,231,502] gi|257821194|gb|EEV48324.1| AAA ATPase [Enterococcus faecium 1,231,501] gi|257830584|gb|EEV57191.1| AAA ATPase [Enterococcus faecium 1,231,408] gi|260073330|gb|EEW61671.1| AAA ATPase [Enterococcus faecium C68] gi|291590078|gb|EFF21870.1| ATPase, AAA family [Enterococcus faecium E1071] gi|291594964|gb|EFF26314.1| ATPase, AAA family [Enterococcus faecium E1679] gi|291598270|gb|EFF29363.1| ATPase, AAA family [Enterococcus faecium U0317] gi|291601560|gb|EFF31827.1| ATPase, AAA family [Enterococcus faecium E1039] gi|291605308|gb|EFF34763.1| ATPase, AAA family [Enterococcus faecium E1162] Length = 428 Score = 42.4 bits (99), Expect = 0.059, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 67/178 (37%), Gaps = 32/178 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117 +IL GP G+GK+ +A+ + + + R N A + + +LL+++ Sbjct: 42 MILYGPPGTGKTSIASAIAGSTNYAFRMLNAATDSKKDLQVVAEEAKMSGTVILLLDEVH 101 Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 LD D L H+ + +L+ A T + P + SR + ++ + Sbjct: 102 RLDKTKQDFLLPHL-----ESGRIILIGATTENPYITIN-PAIRSR---TQIFEVKPLTE 152 Query: 176 DFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLV-FAEKLVDKMDNLALS 225 ++ + D R + +D+ + + R+ ++ ++ LS Sbjct: 153 QDIQLAVEHALRDKERGLGQQAIQLDEDA----LLHLSRATNGDLRSALNGLELATLS 206 >gi|308158252|gb|EFO61017.1| 26S protease regulatory subunit 6A [Giardia lamblia P15] Length = 501 Score = 42.4 bits (99), Expect = 0.059, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 PS+ V+L G G+GK+ LA + ++ + A L + I +++E Sbjct: 258 PSKGVLLYGVPGTGKTALARALAHEANCSFLQLTATQLVQLYIGDGSAMVIE 309 >gi|261837854|gb|ACX97620.1| hypothetical protein KHP_0409 [Helicobacter pylori 51] Length = 391 Score = 42.4 bits (99), Expect = 0.059, Method: Composition-based stats. Identities = 32/189 (16%), Positives = 70/189 (37%), Gaps = 25/189 (13%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILI--------DTRKPVLLE 114 GP G GK+ LA I + F+ L+ + + + V ++ Sbjct: 38 PHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRLKLKNYQNTLLKPVVFID 97 Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 + L+ + I + D +L++ A T ++ + + SR + + +++ + Sbjct: 98 ETHRLNKTQQEFLLPI---MEKDHALILGASTQDPNYSLSHA-IRSR---SFIFELTPLN 150 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234 L+K+ K + I+ Y++ S A L++ +D A I + Sbjct: 151 KSDLDKLCAKALTLLKKQIEPSAKTYLLNN---SAGDARALLNLLDLSA-----KIEDPI 202 Query: 235 AAEVLKETQ 243 E L+ + Sbjct: 203 TLETLQSLR 211 >gi|255710443|ref|XP_002551505.1| KLTH0A00968p [Lachancea thermotolerans] gi|238932882|emb|CAR21063.1| KLTH0A00968p [Lachancea thermotolerans] Length = 427 Score = 42.4 bits (99), Expect = 0.059, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 54/142 (38%), Gaps = 41/142 (28%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P+ ++L GP G+GKS LA + ++ ST FS + L S + + ++ Sbjct: 156 PTSGILLFGPPGTGKSYLAKAVATEANSTFFSISSSDLVSKWMGESERLVKQLFAMAREN 215 Query: 113 ------LEDIDLLDFND------------TQLFHIINSI-HQYDSSLLMTARTFPVSWG- 152 ++++D L T+L +N + + L++ A P Sbjct: 216 KPSIIFIDEVDALTGQRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDS 275 Query: 153 -----------VCLPDLCSRLK 163 + LPDL +R + Sbjct: 276 AIRRRFEKRIYISLPDLAARTR 297 >gi|238026471|ref|YP_002910702.1| recombination factor protein RarA [Burkholderia glumae BGR1] gi|237875665|gb|ACR27998.1| AAA ATPase, central region [Burkholderia glumae BGR1] Length = 436 Score = 42.4 bits (99), Expect = 0.059, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 64/190 (33%), Gaps = 24/190 (12%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA + + + A I E ++ T L Sbjct: 50 MILWGPPGVGKTTLARLTAHAFDCEFIAISAVLGGVKDIRESMEQARETLNR-SGRHTIL 108 Query: 127 F----HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 F H N Q +LL + A T S+ V L SR A V + Sbjct: 109 FVDEIHRFNKSQQD--ALLPFVESGLVTFIGATTENPSFEVNSA-LLSR---AQVYVLKS 162 Query: 173 PDDDFLEKVIVK--MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL-SRGMG 229 DD + +++ + A + + ++ + L+++ AL +R Sbjct: 163 LSDDEMRQLLARAQQIALDGLEFEPLAVDTLIGYADGDARRFLNLLEQAQTAALSARTNR 222 Query: 230 ITRSLAAEVL 239 I A + Sbjct: 223 IDADFVASAM 232 >gi|125991900|ref|NP_001075060.1| spastin [Bos taurus] gi|226694297|sp|A2VDN5|SPAST_BOVIN RecName: Full=Spastin gi|124829112|gb|AAI33328.1| Spastin [Bos taurus] gi|296482694|gb|DAA24809.1| spastin [Bos taurus] Length = 614 Score = 42.4 bits (99), Expect = 0.059, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 30/50 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S +T F+ A SL S + + ++ Sbjct: 372 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 421 >gi|229542261|ref|ZP_04431321.1| ATP-dependent metalloprotease FtsH [Bacillus coagulans 36D1] gi|229326681|gb|EEN92356.1| ATP-dependent metalloprotease FtsH [Bacillus coagulans 36D1] Length = 670 Score = 42.4 bits (99), Expect = 0.059, Method: Composition-based stats. Identities = 32/197 (16%), Positives = 63/197 (31%), Gaps = 43/197 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ FS + + Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 257 Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + + L + ++ + +++ A P L Sbjct: 258 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFSANEGIIIIAATNRPDILDPAL 317 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 L+ + + PD E V+ ++ + L A I QR A Sbjct: 318 ------LRPGRFDRQITVDRPDVHGREAVLRVHARNKPLDPSVDLKA-IAQRTP-GFSGA 369 Query: 213 EKLVDKMDNLALSRGMG 229 L + ++ AL Sbjct: 370 -DLENLLNEAALIAARA 385 >gi|84490197|ref|YP_448429.1| putative 26S protease, regulatory subunit [Methanosphaera stadtmanae DSM 3091] gi|84373516|gb|ABC57786.1| putative 26S protease, regulatory subunit [Methanosphaera stadtmanae DSM 3091] Length = 370 Score = 42.4 bits (99), Expect = 0.059, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 55/157 (35%), Gaps = 34/157 (21%) Query: 57 DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR------------STRFSNIAKSLDSIL 104 D + +W R ++ G G+GK+ LA +++ + A + + Sbjct: 147 DKFKNWAPRNILFYGRPGTGKTMLAQALANELNVPIHMIKATSLIGNHVGDGANQIHELY 206 Query: 105 IDTR----KPVLLEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTF 147 R + +++ID + L ++ I DS + + A Sbjct: 207 KQARYTKPTVIFIDEIDAIALERKYQSLRGDVTEIVNALLTEMDGIEDNDSIITICATNN 266 Query: 148 PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 P + SR + ++ +LP+D+ ++ K Sbjct: 267 PEILDYAI---RSRFEE--EIEFTLPNDEERRIILEK 298 >gi|84686620|ref|ZP_01014512.1| putative transposase [Maritimibacter alkaliphilus HTCC2654] gi|84686630|ref|ZP_01014522.1| putative transposase [Maritimibacter alkaliphilus HTCC2654] gi|84665294|gb|EAQ11772.1| putative transposase [Rhodobacterales bacterium HTCC2654] gi|84665304|gb|EAQ11782.1| putative transposase [Rhodobacterales bacterium HTCC2654] Length = 225 Score = 42.4 bits (99), Expect = 0.059, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 65/168 (38%), Gaps = 30/168 (17%) Query: 11 FVPDKQKNDQPKNKEEQLFFS-FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP----SR 65 + + + Q ++ + Q+ + P + D E LI + R Sbjct: 26 LLTAEIREKQARSVKYQMTIAKLPLAKELEEFDFEAAEVNET---LIRDLANGDFLDHQR 82 Query: 66 VVILVGPSGSGKSCLA-NIWSDKSRSTR------FSNIAKSLDSILID---TRKPVLLED 115 ++L+G +G+GK+ LA +I R+ R ++ LD+ R L+ Sbjct: 83 NLVLIGGTGTGKTHLAVSIARTCIRAGRRGRFFNVVDLVNKLDAEARAERQGRTADLISR 142 Query: 116 IDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 +D L ++ LFH+I+ +++ +S+++T W Sbjct: 143 LDFLILDELGYLPFAQTGGQLLFHLISKLYER-TSIIVTTNLAFGEWP 189 >gi|323140181|ref|ZP_08075163.1| IstB domain protein ATP-binding protein [Methylocystis sp. ATCC 49242] gi|322394563|gb|EFX97182.1| IstB domain protein ATP-binding protein [Methylocystis sp. ATCC 49242] Length = 243 Score = 42.4 bits (99), Expect = 0.060, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 48/110 (43%), Gaps = 22/110 (20%) Query: 64 SRVVILVGPSGSGKSCLANIWSD-------KSRSTRFSNIAKSLDSILIDTRKPVLLE-- 114 R ++LVG +G+GK+ LA + + R ++ L++ R+ L + Sbjct: 99 QRNIVLVGGTGTGKTHLAIAIARSCIRASLRGRFYTTVDLVNRLEAETRAGRQGRLADYL 158 Query: 115 -DIDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 +D++ ++ LFH+I+ +++ +S+++T W Sbjct: 159 TRLDVVILDELGYLPFAQAGGQLLFHLISRLYER-TSIIVTTNLAFGEWP 207 >gi|317179185|dbj|BAJ56973.1| recombination factor protein RarA [Helicobacter pylori F30] Length = 391 Score = 42.4 bits (99), Expect = 0.060, Method: Composition-based stats. Identities = 32/189 (16%), Positives = 70/189 (37%), Gaps = 25/189 (13%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILI--------DTRKPVLLE 114 GP G GK+ LA I + F+ L+ + + + V ++ Sbjct: 38 PHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRLKLKNYQNTLLKPVVFID 97 Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 + L+ + I + D +L++ A T ++ + + SR + + +++ + Sbjct: 98 ETHRLNKTQQEFLLPI---MEKDHALILGASTQDPNYSLSHA-IRSR---SFIFELTPLN 150 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234 L+K+ K + I+ Y++ S A L++ +D A I + Sbjct: 151 KSDLDKLCAKALTLLKKQIEPSAKTYLLNN---SAGDARALLNLLDLSA-----KIEDPI 202 Query: 235 AAEVLKETQ 243 E L+ + Sbjct: 203 TLETLQSLR 211 >gi|313212248|emb|CBY36254.1| unnamed protein product [Oikopleura dioica] gi|313232801|emb|CBY09484.1| unnamed protein product [Oikopleura dioica] Length = 801 Score = 42.4 bits (99), Expect = 0.060, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 60/161 (37%), Gaps = 44/161 (27%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILIDTR 108 R ++L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 237 RGILLFGPPGTGKTLIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNAP 296 Query: 109 KPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL- 155 + +++ID + QL +++ + Q ++M A P S L Sbjct: 297 SIIFIDEIDSIAPKRDKTNGEVERRIVSQLLTLMDGLKQRAHVVVMGATNRPNSIDAALR 356 Query: 156 -------------PDLCSRLK--AATVVKISLPDDDFLEKV 181 PD R++ K+ L DD LE V Sbjct: 357 RFGRFDREVDIGIPDTVGRMEILQIHTKKMKLADDVDLEVV 397 Score = 39.7 bits (92), Expect = 0.38, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 508 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREVFDKA 564 >gi|312882487|ref|ZP_07742228.1| recombination factor protein RarA [Vibrio caribbenthicus ATCC BAA-2122] gi|309369887|gb|EFP97398.1| recombination factor protein RarA [Vibrio caribbenthicus ATCC BAA-2122] Length = 448 Score = 42.4 bits (99), Expect = 0.060, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 72/198 (36%), Gaps = 36/198 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G+GK+ LA + + + + R S + + I + K + L T Sbjct: 54 MILWGPPGTGKTTLAELAAQYADAEVERVSAVTSGVKEIRLAIDKA----RENKLAGRRT 109 Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N Q D ++ T L SR A V K+ Sbjct: 110 VLFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKL 163 Query: 171 SLPD-DDFLEKVIVK-MFADRQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 S D DD L + +D + + + + ++ + + ++ + ++A Sbjct: 164 SALDKDDILLALKQAIECSDNGLGQSTALFKDNVLDRLAELVQGDVRMSLNYLELLYDMA 223 Query: 224 LSRGMG---ITRSLAAEV 238 G IT +L AEV Sbjct: 224 EEDAKGNKVITLALLAEV 241 >gi|303388375|ref|XP_003072422.1| DNA replication factor C small subunit [Encephalitozoon intestinalis ATCC 50506] gi|303301562|gb|ADM11062.1| DNA replication factor C small subunit [Encephalitozoon intestinalis ATCC 50506] Length = 284 Score = 42.4 bits (99), Expect = 0.060, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 64/165 (38%), Gaps = 24/165 (14%) Query: 65 RVVILVGPSGSGKSCLANIWSDK--------SRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 ++L GP G+GK+ A++ + + R + + ++ K V+L++ Sbjct: 34 PNLLLYGPPGTGKTTFAHLLATRKLELNASDERGISVIREKIKVYASTLEKDKTVILDEC 93 Query: 117 DLLDFNDTQLFHIINSIHQY--DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 + L + H + + + ++ + G P L SRL VK +L D Sbjct: 94 ENLTSDAQ---HCLRRVIEDSVNTRFIFITNYPSKIIG---P-LRSRLVG---VKFTLAD 143 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 + LE + + + DK+L + + L A ++ + Sbjct: 144 NRVLEGI----GGNEGLGYDKELYRRLFKLCGNDLRKAINVLQGI 184 >gi|239627918|ref|ZP_04670949.1| ATP-dependent metalloprotease FtsH [Clostridiales bacterium 1_7_47_FAA] gi|239518064|gb|EEQ57930.1| ATP-dependent metalloprotease FtsH [Clostridiales bacterium 1_7_47FAA] Length = 625 Score = 42.4 bits (99), Expect = 0.060, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 59/191 (30%), Gaps = 51/191 (26%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 +LVGP G+GK+ LA + ++ FS + + Sbjct: 215 ALLVGPPGTGKTLLARAVAGEAHVPFFSISGSEFVEMFVGMGAAKVRDLFKQANDKAPCI 274 Query: 111 VLLEDIDLLD---------FNDT------QLFHIINSIHQYDSSLLMTARTFPVSW---- 151 V +++ID + ND QL ++ +++ A P S Sbjct: 275 VFIDEIDTIGKKRDGGGMSGNDEREQTLNQLLTEMDGFDGKKGVVILAATNRPESLDKAL 334 Query: 152 ----------GVCLPDLCSRLKAATVVK---ISLPDDDFLEKVIVKMFADRQIFIDKKLA 198 V LPDL R +A V + + DD + + + Sbjct: 335 LRPGRFDRRVPVELPDLKGR-EAILRVHGQNVKMSDDVDYSAIARATAGASGAELANIIN 393 Query: 199 AYIVQ--RMER 207 ++ RM R Sbjct: 394 EAALRAVRMGR 404 >gi|237737738|ref|ZP_04568219.1| holliday junction DNA helicase ruvB [Fusobacterium mortiferum ATCC 9817] gi|229419618|gb|EEO34665.1| holliday junction DNA helicase ruvB [Fusobacterium mortiferum ATCC 9817] Length = 333 Score = 42.4 bits (99), Expect = 0.060, Method: Composition-based stats. Identities = 25/184 (13%), Positives = 64/184 (34%), Gaps = 41/184 (22%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G GK+ LA + +++ + L+ LE+ D+L ++ Sbjct: 55 ILLYGPPGLGKTTLAGVVANEMGANLKITSGPVLERAGDLAAILTSLEENDILFIDEI-- 112 Query: 127 FHIINS--------IHQYDSSLLMTARTFPVS-WGVCLPD------------LCS--RLK 163 H +N+ + ++ + + LP+ L S R + Sbjct: 113 -HRLNNTVEEILYPAMEDGELDIIIGKGPSARSIRIELPNFTLIGATTRAGLLSSPLRDR 171 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFID--------------KKLAAYIVQRMERSL 209 ++ ++ L ++I++ + ++ ++A +++R+ R Sbjct: 172 FGVTHRMEYYTEEELAQIILRGGKILGVKVEREGALELASRSRGTPRIANRLLKRV-RDY 230 Query: 210 VFAE 213 Sbjct: 231 CEIR 234 >gi|227356776|ref|ZP_03841161.1| recombination ATPase [Proteus mirabilis ATCC 29906] gi|227163066|gb|EEI48001.1| recombination ATPase [Proteus mirabilis ATCC 29906] Length = 457 Score = 42.4 bits (99), Expect = 0.060, Method: Composition-based stats. Identities = 43/199 (21%), Positives = 69/199 (34%), Gaps = 38/199 (19%) Query: 67 VILVGPSGSGKSCLANIWS--DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G+GK+ LA I ++ R S + + I R + + + T Sbjct: 61 MILWGPPGTGKTTLAEIIGRYAQADIERLSAVTSGIKEI----RAAIDIAHQNRNAGRRT 116 Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N Q D ++ T L SR A V + Sbjct: 117 ILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSA---LLSR---ARVYLL 170 Query: 171 SLPDDDFLEKVIVKMFAD-------RQIFIDK---KLAAYIVQ-RMERSLVFAEKLVDKM 219 + +E+V+ + D R I + K+ A +V RSL E + D Sbjct: 171 RSLTETDIEQVLQQALDDTERGLGGRNIILPDNTRKMIAELVNGDARRSLNLLEMMADMA 230 Query: 220 DNLALSRGMGITRSLAAEV 238 + + +T L E+ Sbjct: 231 EVDS-QGKRTLTAELLKEI 248 >gi|225377756|ref|ZP_03754977.1| hypothetical protein ROSEINA2194_03407 [Roseburia inulinivorans DSM 16841] gi|225210433|gb|EEG92787.1| hypothetical protein ROSEINA2194_03407 [Roseburia inulinivorans DSM 16841] Length = 443 Score = 42.4 bits (99), Expect = 0.060, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 64/177 (36%), Gaps = 38/177 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125 +IL GP G+GK+ LA + ++ + + A S + ED+ N+ Sbjct: 55 IILYGPPGTGKTTLAKVIANTTSAEFLQINATSAGKKDM--------EDVIAQAKNNQGM 106 Query: 126 ------LF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 LF H N + + +L+ A T + V L SR + + Sbjct: 107 YGKKTILFIDEIHRFNKGQQDYLLPFVEDGTVILIGATTENPYFEVNGA-LLSR---SII 162 Query: 168 VKISLPDDDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVD 217 ++ + ++ +I++ D++ I+++ ++ A ++ Sbjct: 163 FELKNLSTEDIKTLILRAVNDKEKGMGAYDAVIEEEALDFLADVANGDARAALTAIE 219 >gi|154149662|ref|YP_001403280.1| Holliday junction DNA helicase RuvB [Candidatus Methanoregula boonei 6A8] gi|166231501|sp|A7I4H6|RUVB_METB6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|153998214|gb|ABS54637.1| Holliday junction DNA helicase RuvB [Methanoregula boonei 6A8] Length = 335 Score = 42.4 bits (99), Expect = 0.060, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 3/74 (4%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P ++ GP G GK+ LA+I + + + + L+ L++ D+L + Sbjct: 51 PIDHILFAGPPGLGKTTLAHIIAREMGAAIRTTTGPVLEKTGDMAAIATALQNGDVLFID 110 Query: 123 DTQLFHIINSIHQY 136 + H +N + + Sbjct: 111 EI---HRMNPVVEE 121 >gi|114771182|ref|ZP_01448602.1| ATP-dependent metalloprotease FtsH [alpha proteobacterium HTCC2255] gi|114548107|gb|EAU50994.1| ATP-dependent metalloprotease FtsH [alpha proteobacterium HTCC2255] Length = 639 Score = 42.4 bits (99), Expect = 0.060, Method: Composition-based stats. Identities = 31/198 (15%), Positives = 64/198 (32%), Gaps = 47/198 (23%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 +L+GP G+GK+ LA + ++ F+ + + Sbjct: 194 ALLIGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCI 253 Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 V +++ID + D + L + ++ + +L+ A P L Sbjct: 254 VFIDEIDAVGRHRGAGHGGGNDEREQTLNQLLVEMDGFSANEGVILLAATNRPDVLDPAL 313 Query: 156 P-----DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 D V++ PD EK++ R+ + + I+ R Sbjct: 314 KRPGRFD--------RQVQVPNPDIKGREKILNVHA--RKSPLGPDVDLRIIARGTPGFS 363 Query: 211 FAEKLVDKMDNLALSRGM 228 A L + ++ AL+ Sbjct: 364 GA-DLANLVNEAALTAAR 380 >gi|244790112|ref|NP_058658.2| spastin isoform 2 [Mus musculus] Length = 613 Score = 42.4 bits (99), Expect = 0.060, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 30/50 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S +T F+ A SL S + + ++ Sbjct: 371 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 420 >gi|149050667|gb|EDM02840.1| spastin (predicted) [Rattus norvegicus] Length = 299 Score = 42.4 bits (99), Expect = 0.060, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 30/50 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S +T F+ A SL S + + ++ Sbjct: 122 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 171 >gi|28279482|gb|AAH46286.1| Spastin [Mus musculus] gi|148706481|gb|EDL38428.1| spastin, isoform CRA_a [Mus musculus] Length = 613 Score = 42.4 bits (99), Expect = 0.060, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 30/50 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S +T F+ A SL S + + ++ Sbjct: 371 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 420 >gi|66357928|ref|XP_626142.1| nuclear VCP like protein with 2 AAA ATpase domains [Cryptosporidium parvum Iowa II] gi|46227286|gb|EAK88236.1| nuclear VCP like protein with 2 AAA ATpase domains [Cryptosporidium parvum Iowa II] Length = 695 Score = 42.4 bits (99), Expect = 0.060, Method: Composition-based stats. Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 PS V+ L GP G GK+ LA + +S + S Sbjct: 442 PSGVL-LYGPPGCGKTLLAKAIAKESGANFIS 472 >gi|328865371|gb|EGG13757.1| 26S proteasome ATPase 3 subunit [Dictyostelium fasciculatum] Length = 426 Score = 42.4 bits (99), Expect = 0.061, Method: Composition-based stats. Identities = 26/183 (14%), Positives = 63/183 (34%), Gaps = 38/183 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++ ST L + I ++ Sbjct: 206 PPKGVLMYGPPGTGKTLLARACAAQTNSTYLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 265 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151 ++++D + + ++N + + ++ A Sbjct: 266 GPTIIFIDELDAIGTKRFDSELSGDREVQRTMLELLNQLDGFSSDANIKVIAATNRIDIL 325 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ LP+++ ++ R++ ++ + + R Sbjct: 326 DPAL--LRSGRLD--RKIEFPLPNEEARAHILQ--IHSRKMNVNPDVNFEELARSTEDFN 379 Query: 211 FAE 213 A+ Sbjct: 380 GAQ 382 >gi|240280730|gb|EER44234.1| vacuolar sorting protein [Ajellomyces capsulatus H143] gi|325089013|gb|EGC42323.1| vacuolar sorting-associated protein [Ajellomyces capsulatus H88] Length = 433 Score = 42.4 bits (99), Expect = 0.061, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 14/80 (17%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + ++L GP G+GKS LA + ++ ST FS + L S + + ++ Sbjct: 163 PWKAILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESERLV---------- 212 Query: 123 DTQLFHIINSIHQYDSSLLM 142 QLF N + +++ Sbjct: 213 -KQLF---NMARESRPAIIF 228 >gi|296824210|ref|XP_002850606.1| 26S protease regulatory subunit 6A [Arthroderma otae CBS 113480] gi|238838160|gb|EEQ27822.1| 26S protease regulatory subunit 6A [Arthroderma otae CBS 113480] Length = 461 Score = 42.4 bits (99), Expect = 0.061, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 67/199 (33%), Gaps = 53/199 (26%) Query: 45 VHSAIEQAVRLIDS--WP------------SWPSRVVILVGPSGSGKSCLANIWSDKSRS 90 V +Q L+++ WP P ++ GP G+GK+ LA + ++ + Sbjct: 209 VGGLNKQIEELLEAIVWPMKEADRFKKIGIKAPKGALM-YGPPGTGKTLLARACAAQTEA 267 Query: 91 TRFSNIAKSLDSILIDTRKPVL----------------LEDIDLLDFN------------ 122 T L + I ++ ++++D + Sbjct: 268 TFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPAIIFIDELDAIGTKRFDSEKSGDREV 327 Query: 123 DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDLCS-RLKAATVVKISLPDDDFL 178 + ++N D ++ A L L S RL ++ LP+++ Sbjct: 328 QRTMLELLNQLDGFASDDRVKVLAATNRIDVLDPAL--LRSGRLD--RKIEFPLPNEEAR 383 Query: 179 EKVIVKMFADRQIFIDKKL 197 +++ R++ +D K+ Sbjct: 384 AQIL--RIHSRKMTVDDKV 400 >gi|198465206|ref|XP_002134929.1| GA23750 [Drosophila pseudoobscura pseudoobscura] gi|198150056|gb|EDY73556.1| GA23750 [Drosophila pseudoobscura pseudoobscura] Length = 1329 Score = 42.4 bits (99), Expect = 0.061, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 28/110 (25%) Query: 47 SAIEQAVRLIDSWPSWPSRV--------------VILVGPSGSGKSCLANIWSDKSRSTR 92 +E V +++ WPSR V+L GP G+GK+ L Sbjct: 725 PGLESVVGVLEEVLMWPSRYPTIFNASPLRNQAGVLLYGPPGTGKTYL------------ 772 Query: 93 FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLM 142 S +A S + +I + P LL + ++ + ++ N +L Sbjct: 773 VSQLATSWNLRIISVKGPELL--AKYIGQSEENVRNLFNRARSARPCVLF 820 >gi|158424151|ref|YP_001525443.1| recombination factor protein RarA [Azorhizobium caulinodans ORS 571] gi|158331040|dbj|BAF88525.1| AAA ATPase [Azorhizobium caulinodans ORS 571] Length = 469 Score = 42.4 bits (99), Expect = 0.061, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 67/183 (36%), Gaps = 28/183 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 IL GP GSGK+ +A + + F ++ L + + + T + Sbjct: 85 FILWGPPGSGKTTIARL-VARGLGFEFVQLSAVLSGVADLRKVVETARQLRTGSGRQTAV 143 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N + + +L+ A T S+ + L SR A V + + Sbjct: 144 FVDELHRFNRTTQDALLPHVEDGTIVLIGATTENPSFSMVAA-LLSR---AKVYTLRRLE 199 Query: 175 DDFLEKVIVK--MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK---------MDNLA 223 L +++ + A R + +D + + + + + LV++ +D A Sbjct: 200 KADLARLLERAEAHAGRCLPLDAQAREALTEMADGDGRYLLGLVEELLALPPGPDLDLEA 259 Query: 224 LSR 226 L++ Sbjct: 260 LAQ 262 >gi|126179507|ref|YP_001047472.1| AAA family ATPase, CDC48 subfamily protein [Methanoculleus marisnigri JR1] gi|125862301|gb|ABN57490.1| AAA family ATPase, CDC48 subfamily [Methanoculleus marisnigri JR1] Length = 808 Score = 42.4 bits (99), Expect = 0.061, Method: Composition-based stats. Identities = 28/206 (13%), Positives = 67/206 (32%), Gaps = 54/206 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + V+L GP G+GK+ +A + + + + + + + Sbjct: 217 PPKGVLLYGPPGTGKTLIAKAVASEVDAHFITLSGPEIMSKYYGESEERLREVFEEAQEN 276 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 V +++ID + QL +++ + +++ A P Sbjct: 277 APSIVFIDEIDSIAPKREEVKGEVERRIVAQLLALMDGLKTRGQVVVIAATNLPDMIDPA 336 Query: 155 LPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---RS 208 L + ++I +PD +++ R + + + + R++ RS Sbjct: 337 LR------RGGRFDREIEIGIPDTKGRQQIFQ--IHTRGMPLAEDV------RLDDYARS 382 Query: 209 ----LVFAEKLVDKMDNLALSRGMGI 230 + L+ K A+ I Sbjct: 383 THGFVGADIALLAK--EAAMHALRRI 406 Score = 37.4 bits (86), Expect = 1.7, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 21/38 (55%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P R ++L GP G+GK+ LA +++S S S L Sbjct: 489 PPRGILLFGPPGTGKTLLAKAVANESESNFISVKGPEL 526 >gi|148231546|ref|NP_001086725.1| spastin [Xenopus laevis] gi|82235616|sp|Q6AZT2|SPAST_XENLA RecName: Full=Spastin gi|50603653|gb|AAH77358.1| Spg4-prov protein [Xenopus laevis] Length = 600 Score = 42.4 bits (99), Expect = 0.061, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 30/50 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S +T F+ A SL S + + ++ Sbjct: 358 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 407 >gi|295105669|emb|CBL03213.1| Recombination protein MgsA [Faecalibacterium prausnitzii SL3/3] Length = 424 Score = 42.4 bits (99), Expect = 0.061, Method: Composition-based stats. Identities = 37/202 (18%), Positives = 75/202 (37%), Gaps = 35/202 (17%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTR------------FSNIAKSLDSILIDTRKPVL 112 +I GPSG+GK+ +A I ++ S T + K + ++ + Sbjct: 40 PNMIFYGPSGTGKTTVARIIAENSGMTLHKLNGTSCGTGDIKAVLKDIGTLAAAGGILLY 99 Query: 113 LEDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK-- 169 L++I L+ L I + S L+ + T + + L SR TV + Sbjct: 100 LDEIQYLNKKQQQSLLECI----EDGSVTLIASTTENPYFYIYNA-LLSR---CTVFEFK 151 Query: 170 -ISLPD-DDFLEKVIVKMFADRQIFI--DKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 ++ D + + + ++ Q+ + D+ AY+ E + K + +D + Sbjct: 152 PLAAADVERGVRNAVQRLSEGEQVPVCMDEDACAYLA---ESAGGDLRKALGCLDFAVTA 208 Query: 226 R-----GMGITRSLAAEVLKET 242 IT + +V + T Sbjct: 209 APVENGEKRITLDMIRQVTRRT 230 >gi|270291003|ref|ZP_06197226.1| ATPase [Pediococcus acidilactici 7_4] gi|270280399|gb|EFA26234.1| ATPase [Pediococcus acidilactici 7_4] Length = 425 Score = 42.4 bits (99), Expect = 0.061, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 65/169 (38%), Gaps = 27/169 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117 +IL GP G+GK+ +A+ + ++ + R N A + + +LL++I Sbjct: 41 MILYGPPGTGKTSIASAIAGSTKYAFRMLNAATDSKKQLQIVAEEAKMSGTVVLLLDEIH 100 Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 LD D L H+ + +L+ A T + P + SR + ++ Sbjct: 101 RLDKTKQDFLLPHL-----ESGQIILIGATTENPYININ-PAIRSR---TQIFEVKPLTP 151 Query: 176 DFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVD 217 +++ + D Q + +D+ ++ + L A V+ Sbjct: 152 ADIKEAVEMALQDSQRGLGDLPLQMDENALQFVSEATGGDLRSALNAVE 200 >gi|167627500|ref|YP_001678000.1| recombination factor protein RarA [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597501|gb|ABZ87499.1| AAA family-ATPase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 411 Score = 42.4 bits (99), Expect = 0.061, Method: Composition-based stats. Identities = 31/193 (16%), Positives = 63/193 (32%), Gaps = 29/193 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS---------NIAKSLDSILIDTRKPVLLEDID 117 +IL G G GK+ LA I + + F ++ K + + L++I Sbjct: 43 LILCGKPGVGKTTLAKIIASSKQLEFFELSAVDSGVKDVKKLIADNQHLGSFVLFLDEIH 102 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 + + L + +L+ T L SR ++++ + Sbjct: 103 RFNKSQQDLLLPY---VESGKIILIGATTENPTYYLNNA---LVSR---VFILRLKRLNI 153 Query: 176 DFLEKVIVK------MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229 K+I + + A ID L I E K+++ ++ + L Sbjct: 154 SETRKLIQRAITKDELLAKHSFEIDDDLYNAIHNYSE---GDCRKILNLLERMFLISDRT 210 Query: 230 ITRSLAAEVLKET 242 T L ++ + Sbjct: 211 NTIHLDKDLFDQA 223 >gi|156083703|ref|XP_001609335.1| cell division cycle protein ATPase [Babesia bovis T2Bo] gi|154796586|gb|EDO05767.1| cell division cycle protein ATPase, putative [Babesia bovis] Length = 922 Score = 42.4 bits (99), Expect = 0.061, Method: Composition-based stats. Identities = 22/164 (13%), Positives = 61/164 (37%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + VIL GP G+GK+ +A + ++ + + + ++ + + Sbjct: 394 PPKGVILHGPPGTGKTLIARAIASETGAHCVVINGPEIMSKHVGESEAKLRRAFEKASKN 453 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ I + +++ A S Sbjct: 454 SPAIIFIDEIDSIATKREKSPSELERRIVSQLLTLMDGIEPSKNVVVLAATNRINSIDTA 513 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L R + ++I+ D++ +++ R + + + Sbjct: 514 LR----RFGRFDREIEIAACDEEERYEIL--KIKTRGMRLSPDI 551 >gi|145296361|ref|YP_001139182.1| hypothetical protein cgR_2276 [Corynebacterium glutamicum R] gi|140846281|dbj|BAF55280.1| hypothetical protein [Corynebacterium glutamicum R] Length = 687 Score = 42.4 bits (99), Expect = 0.061, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 9/97 (9%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123 R +++ GP G K ++ + + K I V+++D+ L D +D Sbjct: 27 GRFLVVTGPHGVNKEHFTREFAAELGEFEVNPFLKKRPRASI-----VVVDDVHLADKDD 81 Query: 124 TQLFHIINSIHQYDSSLLMTA--RTFPVSWGVCLPDL 158 Q +N +H ++L TA R + + LP L Sbjct: 82 IQ--KTLNLVHTKGLTVLATAPHRIPGATDLLALPPL 116 >gi|47217168|emb|CAG11004.1| unnamed protein product [Tetraodon nigroviridis] Length = 440 Score = 42.4 bits (99), Expect = 0.061, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V++ GP G+GK+ LA + ++++T L + I ++ + Sbjct: 207 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRD 258 >gi|56964617|ref|YP_176348.1| hypothetical protein ABC2853 [Bacillus clausii KSM-K16] gi|56910860|dbj|BAD65387.1| DNA replication protein [Bacillus clausii KSM-K16] Length = 278 Score = 42.4 bits (99), Expect = 0.061, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 51/144 (35%), Gaps = 28/144 (19%) Query: 40 RDDLLVHSAIEQA----VRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS----DKSRST 91 D+ +V E A ++ ++ + W + L G G+GKS LA + K + Sbjct: 95 FDNFIVRPGSEVAHKACLKYVNEFKEWGGDSLGLWGTYGNGKSLLAAAVANELSSKGHTV 154 Query: 92 RFSNIAKSLDSI-----------------LIDTRKPVLLEDIDL---LDFNDTQLFHIIN 131 F + LD + + T ++L+DI ++ + F II+ Sbjct: 155 VFQTTKQLLDKLKSSFGDKSNFKYDEIIRALVTCDLLVLDDIGAEKVTEWTEETFFGIID 214 Query: 132 SIHQYDSSLLMTARTFPVSWGVCL 155 ++ + T P + Sbjct: 215 HRYRKKRPIFYTTNLRPSELHTKI 238 >gi|87125265|ref|ZP_01081111.1| putative ATPase, AAA family protein [Synechococcus sp. RS9917] gi|86167034|gb|EAQ68295.1| putative ATPase, AAA family protein [Synechococcus sp. RS9917] Length = 738 Score = 42.4 bits (99), Expect = 0.061, Method: Composition-based stats. Identities = 38/217 (17%), Positives = 76/217 (35%), Gaps = 28/217 (12%) Query: 22 KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--VILVGPSGSGKSC 79 + ++ Q + DD V A + RV ++L GP G GK+ Sbjct: 12 QLRQRQAPLADRLRPR-DLDDF-VGQGAILAEGRLLRRAIAADRVGNLLLHGPPGVGKTT 69 Query: 80 LANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLF----HIINSIH- 134 LA I ++ +R+ S A + + ++ T LF H NS Sbjct: 70 LARIIANHTRAHFSSLNAVLAGVKELRAEVDAARQRLERHGLR-TILFIDEVHRFNSAQQ 128 Query: 135 -------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 + + L+ A T + V L SR + + ++ + + L +++ + + Sbjct: 129 DALLPWVENGTLTLIGATTENPYFEVNKA-LVSR---SRLFRLQALEAEDLHRLLQRALS 184 Query: 188 D-------RQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 D R + + + AA++V ++ Sbjct: 185 DSERGYGNRAVSVTAEAAAHLVDVANGDARSLLNALE 221 >gi|67623819|ref|XP_668192.1| AAA ATPase [Cryptosporidium hominis TU502] gi|54659385|gb|EAL37964.1| AAA ATPase [Cryptosporidium hominis] Length = 690 Score = 42.4 bits (99), Expect = 0.061, Method: Composition-based stats. Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 PS V+ L GP G GK+ LA + +S + S Sbjct: 437 PSGVL-LYGPPGCGKTLLAKAIAKESGANFIS 467 >gi|330794089|ref|XP_003285113.1| hypothetical protein DICPUDRAFT_148953 [Dictyostelium purpureum] gi|325084939|gb|EGC38356.1| hypothetical protein DICPUDRAFT_148953 [Dictyostelium purpureum] Length = 743 Score = 42.4 bits (99), Expect = 0.062, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 48/120 (40%), Gaps = 20/120 (16%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRF-------------SNIAKSLDSILIDTRKPV 111 +IL GP G GK+ LA I + KS + I K+ +S++ + + Sbjct: 294 PSIILYGPPGCGKTTLAKIITKKSNANYLELSAVGSGVKDVKEAIDKAKNSLMFGKKTIL 353 Query: 112 LLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++I + + + + + +L+ A T S+ + L SR V ++ Sbjct: 354 FIDEIHRYNKSQQDVLLP---AIESGTIILIGATTENPSFEINNA-LLSR---CKVFRLE 406 >gi|261209220|ref|ZP_05923612.1| AAA ATPase [Enterococcus faecium TC 6] gi|289566136|ref|ZP_06446571.1| AAA domain-containing protein yrvN [Enterococcus faecium D344SRF] gi|294614190|ref|ZP_06694110.1| ATPase, AAA family [Enterococcus faecium E1636] gi|260076766|gb|EEW64501.1| AAA ATPase [Enterococcus faecium TC 6] gi|289162081|gb|EFD09946.1| AAA domain-containing protein yrvN [Enterococcus faecium D344SRF] gi|291592966|gb|EFF24555.1| ATPase, AAA family [Enterococcus faecium E1636] Length = 428 Score = 42.4 bits (99), Expect = 0.062, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 67/178 (37%), Gaps = 32/178 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117 +IL GP G+GK+ +A+ + + + R N A + + +LL+++ Sbjct: 42 MILYGPPGTGKTSIASAIAGSTNYAFRMLNAATDSKKDLQVVAEEAKMSGTVILLLDEVH 101 Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 LD D L H+ + +L+ A T + P + SR + ++ + Sbjct: 102 RLDKTKQDFLLPHL-----ESGRIILIGATTENPYITIN-PAIRSR---TQIFEVKPLTE 152 Query: 176 DFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLV-FAEKLVDKMDNLALS 225 ++ + D R + +D+ + + R+ ++ ++ LS Sbjct: 153 QDIQLAVEHALRDKERGLGQQAIQLDEDA----LLHLSRATNGDLRSALNGLELATLS 206 >gi|257467707|ref|ZP_05631803.1| Holliday junction DNA helicase RuvB [Fusobacterium ulcerans ATCC 49185] gi|317062000|ref|ZP_07926485.1| holliday junction DNA helicase B [Fusobacterium ulcerans ATCC 49185] gi|313687676|gb|EFS24511.1| holliday junction DNA helicase B [Fusobacterium ulcerans ATCC 49185] Length = 340 Score = 42.4 bits (99), Expect = 0.062, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 3/70 (4%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G GK+ LA + + + + L+ LE+ D+L ++ Sbjct: 55 ILLYGPPGLGKTTLAGVIATEMGANLKITSGPVLERAGDLAAILTSLEENDILFIDEI-- 112 Query: 127 FHIINSIHQY 136 H +N+ + Sbjct: 113 -HRLNNTVEE 121 >gi|227833965|ref|YP_002835672.1| Putative transposase [Corynebacterium aurimucosum ATCC 700975] gi|227454981|gb|ACP33734.1| Putative transposase [Corynebacterium aurimucosum ATCC 700975] Length = 165 Score = 42.4 bits (99), Expect = 0.062, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 53/150 (35%), Gaps = 30/150 (20%) Query: 58 SWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------- 104 +W P+ + IL P+G+GK+ +A + +S L ++ Sbjct: 11 NWRENPTNIHILA-PTGTGKTYIACAIGIAACKAGYSVAYYRLGQLVDMLAVFSPTDQNY 69 Query: 105 ------IDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL--LMTARTFPVSWGVCLP 156 + ++++D + N + I D L L+++++ W LP Sbjct: 70 LDKMRKLINVDVLIIDDFMTISINQRGQEDLTKIIFDRDGRLPTLISSQSAAAYWVETLP 129 Query: 157 D------LCSRLKAATVVKISLPDDDFLEK 180 D L SRL + I D D + Sbjct: 130 DRVGADSLVSRLNNGHRIHIG--DFDMRKA 157 >gi|255550263|ref|XP_002516182.1| 26S protease regulatory subunit, putative [Ricinus communis] gi|223544668|gb|EEF46184.1| 26S protease regulatory subunit, putative [Ricinus communis] Length = 430 Score = 42.4 bits (99), Expect = 0.062, Method: Composition-based stats. Identities = 27/154 (17%), Positives = 49/154 (31%), Gaps = 49/154 (31%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P V+ GP G+GK+ LA ++++ + I L + ++ Sbjct: 206 PKGVLC-YGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSK 264 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQYDSS----LLMTARTF--- 147 +++D + + I+N + +D+ +LM Sbjct: 265 KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 324 Query: 148 -PVSW---------GVCLPDLCSRLKAATVVKIS 171 P LPDL SR A + KI Sbjct: 325 DPALLRPGRLDRKVEFGLPDLESR---AQIFKIH 355 >gi|212635390|ref|YP_002311915.1| recombination factor protein RarA [Shewanella piezotolerans WP3] gi|212556874|gb|ACJ29328.1| AAA ATPase, central region [Shewanella piezotolerans WP3] Length = 443 Score = 42.4 bits (99), Expect = 0.062, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 63/177 (35%), Gaps = 34/177 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLD---F 121 ++ GP G+GK+ LA + + + + R S + + I +E + Sbjct: 52 MMFWGPPGTGKTTLAELVASYANAHVERISAVTSGVKEIRS------AIEHAKSVAQSRG 105 Query: 122 NDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 T LF H N + + + + A T S+ + L SR A V Sbjct: 106 QRTLLFVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEINNA-LLSR---ARVYL 161 Query: 170 ISLPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 I + + ++ + D R++ + +A + + + A L++ + Sbjct: 162 IKQLTIEEICQITQQALLDEERGLGKRKLILPPDVAIKLAKVCDGDARKALNLIELI 218 >gi|168047367|ref|XP_001776142.1| predicted protein [Physcomitrella patens subsp. patens] gi|162672517|gb|EDQ59053.1| predicted protein [Physcomitrella patens subsp. patens] Length = 495 Score = 42.4 bits (99), Expect = 0.062, Method: Composition-based stats. Identities = 33/193 (17%), Positives = 66/193 (34%), Gaps = 36/193 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ FS A + + Sbjct: 242 VLLVGPPGTGKTLLARAVAGEAGVPFFSASASEFVEMFVGRGAARIRELFAEAKKNTPSI 301 Query: 111 VLLEDIDLLDF-------ND-----TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL--P 156 V ++++D + ++ QL ++ +++ A P L P Sbjct: 302 VFIDELDAVGGKRGRSFNDERDQTLNQLLTEMDGFDSETGVMVIAATNRPEVLDAALTRP 361 Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216 SR V + PD + ++V+ + D ++ ++ V A L Sbjct: 362 GRISR-----RVNVDAPDFEGRQQVLAVHMRSTPVDGDAATVRAVIAKLTPGFVGA-DLA 415 Query: 217 DKMDNLALSRGMG 229 + ++ AL Sbjct: 416 NVVNEAALLAARE 428 >gi|1066063|gb|AAB34132.1| P26s4 [Cricetinae gen. sp.] Length = 143 Score = 42.4 bits (99), Expect = 0.062, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 62 PKVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 111 >gi|85859556|ref|YP_461758.1| istB-like ATP binding protein [Syntrophus aciditrophicus SB] gi|85722647|gb|ABC77590.1| istB-like ATP binding protein [Syntrophus aciditrophicus SB] Length = 255 Score = 42.4 bits (99), Expect = 0.062, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 20/111 (18%) Query: 67 VILVGPSGSGKSCLANIW---SDKSRSTRFSNIAKSLDSILIDTRK-------------- 109 V+L GPSG GK+ +A + + A L +L+ R Sbjct: 103 VLLCGPSGVGKTHIAQAIGHHACRLGHDVLFTKAVKLFRVLLAGRADQSWEKRMKRYLAP 162 Query: 110 -PVLLEDIDLLDFNDTQLFHIINSIHQY--DSSLLMTARTFPVSWGVCLPD 157 ++++D L N Q I + SS+++T+ P W PD Sbjct: 163 DLLIIDDFGLSALNPLQAEDFYEIIAERYLRSSIIITSNRPPQDWLPLFPD 213 >gi|19553593|ref|NP_601595.1| DNA-binding HTH domain-containing protein [Corynebacterium glutamicum ATCC 13032] gi|62391237|ref|YP_226639.1| ATP-dependent transcription regulator LuxR [Corynebacterium glutamicum ATCC 13032] gi|21325165|dbj|BAB99787.1| DNA-binding HTH domains [Corynebacterium glutamicum ATCC 13032] gi|41326577|emb|CAF21059.1| ATP-dependent transcriptional regulator, LuxR family [Corynebacterium glutamicum ATCC 13032] Length = 687 Score = 42.4 bits (99), Expect = 0.062, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 9/97 (9%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123 R +++ GP G K ++ + + K I V+++D+ L D +D Sbjct: 27 GRFLVVTGPHGVNKEHFTREFAAELGEFEVNPFLKKRPRASI-----VVVDDVHLADKDD 81 Query: 124 TQLFHIINSIHQYDSSLLMTA--RTFPVSWGVCLPDL 158 Q +N +H ++L TA R + + LP L Sbjct: 82 IQ--KTLNLVHTKGLTVLATAPHRIPGATDLLALPPL 116 >gi|71005074|ref|XP_757203.1| hypothetical protein UM01056.1 [Ustilago maydis 521] gi|46096565|gb|EAK81798.1| hypothetical protein UM01056.1 [Ustilago maydis 521] Length = 822 Score = 42.4 bits (99), Expect = 0.062, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 64/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R V++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 236 PPRGVLMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 295 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + + ++M A P S Sbjct: 296 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGLKARSNIVVMAATNRPNSID-- 353 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + V I +PD +++ + + + + Sbjct: 354 -PALR-RFGRFDREVDIGIPDPTGRLEIL--RIHTKNMKLADDV 393 Score = 38.2 bits (88), Expect = 1.1, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 27/57 (47%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G+GK+ LA +++ ++ S L ++ + + + D Sbjct: 509 PSKGVLFYGPPGTGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKA 565 >gi|323509185|dbj|BAJ77485.1| cgd5_2010 [Cryptosporidium parvum] gi|323509813|dbj|BAJ77799.1| cgd5_2010 [Cryptosporidium parvum] Length = 690 Score = 42.4 bits (99), Expect = 0.062, Method: Composition-based stats. Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 PS V+ L GP G GK+ LA + +S + S Sbjct: 437 PSGVL-LYGPPGCGKTLLAKAIAKESGANFIS 467 >gi|241668070|ref|ZP_04755648.1| recombination factor protein RarA [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876605|ref|ZP_05249315.1| recombination factor protein rarA [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842626|gb|EET21040.1| recombination factor protein rarA [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 412 Score = 42.4 bits (99), Expect = 0.062, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 62/193 (32%), Gaps = 29/193 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS---------NIAKSLDSILIDTRKPVLLEDID 117 +IL G G GK+ LA I + R F ++ K + + L++I Sbjct: 43 LILCGKPGVGKTTLAKIIASSKRLEFFELSAVDSGVKDVKKIIADNQHLGSFVLFLDEIH 102 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 + + L + +L+ T L SR ++++ + Sbjct: 103 RFNKSQQDLLLPY---VESGKIILIGATTENPTYYLNNA---LVSR---VFILRLKRLNI 153 Query: 176 DFLEKVIVK------MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229 K+I + + A ID L I E K+++ ++ + L Sbjct: 154 SETRKLIQRAITKDELLAKHSFEIDDDLYNAIHNYSE---GDCRKILNLLERMFLISDRT 210 Query: 230 ITRSLAAEVLKET 242 T L ++ Sbjct: 211 NTIHLDKDLFDRA 223 >gi|244790106|ref|NP_001156342.1| spastin isoform 1 [Mus musculus] gi|226694320|sp|Q9QYY8|SPAST_MOUSE RecName: Full=Spastin Length = 614 Score = 42.4 bits (99), Expect = 0.062, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 30/50 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S +T F+ A SL S + + ++ Sbjct: 372 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 421 >gi|224005579|ref|XP_002291750.1| hypothetical protein THAPSDRAFT_35798 [Thalassiosira pseudonana CCMP1335] gi|220972269|gb|EED90601.1| hypothetical protein THAPSDRAFT_35798 [Thalassiosira pseudonana CCMP1335] Length = 290 Score = 42.4 bits (99), Expect = 0.062, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 4/69 (5%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKS----RSTRFSNIAKSLDSILIDTRKPVLLEDIDL 118 P R ++L GP GSGK+ LA + ++ + ++DS ++ + + + Sbjct: 47 PPRGILLHGPPGSGKTLLARAIAGEAGRSIGGVGSLGLGATVDSFVVCSGSDFVETYVGR 106 Query: 119 LDFNDTQLF 127 LF Sbjct: 107 GAARVRALF 115 >gi|213024936|ref|ZP_03339383.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 35 Score = 42.4 bits (99), Expect = 0.062, Method: Composition-based stats. Identities = 7/34 (20%), Positives = 17/34 (50%) Query: 207 RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 R + +D++D+ +++ +T E+LK Sbjct: 1 REMRTLFMTLDQLDHASITAQRKLTIPFVKEILK 34 >gi|168071185|ref|XP_001787086.1| predicted protein [Physcomitrella patens subsp. patens] gi|162659751|gb|EDQ48100.1| predicted protein [Physcomitrella patens subsp. patens] Length = 216 Score = 42.4 bits (99), Expect = 0.062, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 55/139 (39%), Gaps = 27/139 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 +I GP G+GK+ LA + + +RS + + ++ ++ +++++ Sbjct: 57 LIFYGPPGTGKTTLAKVIARSTRSHFSELNAVTAGVADIRKVVEAAKERLVMDN------ 110 Query: 122 NDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 T LF H N + + +L+ A T + V P L SR + + Sbjct: 111 QRTTLFVDEIHRFNKSQQDALLPYVEEGTIILIGATTENPFFEVN-PALLSR---SQIFS 166 Query: 170 ISLPDDDFLEKVIVKMFAD 188 + + L +V+ + D Sbjct: 167 LQSLTHEELGQVMERALTD 185 >gi|108758416|ref|YP_633125.1| Holliday junction DNA helicase RuvB [Myxococcus xanthus DK 1622] gi|123074142|sp|Q1D2J8|RUVB_MYXXD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|108462296|gb|ABF87481.1| Holliday junction DNA helicase RuvB [Myxococcus xanthus DK 1622] Length = 343 Score = 42.4 bits (99), Expect = 0.062, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 70/198 (35%), Gaps = 31/198 (15%) Query: 71 GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHII 130 GP G GK+ LA+I +++ +L+ L+ D+L ++ H + Sbjct: 64 GPPGLGKTSLAHIIANELGVGIHVTSGPALERKGDLAGLLTNLDARDVLFIDEI---HRL 120 Query: 131 NSIHQ-------YDSSLLMTARTFPV--SWGVCLP----------------DLCSRLKAA 165 N+ + D L +T T P + + LP L R + Sbjct: 121 NAAVEEYLYPAMEDFRLDITIDTGPAARAMKIDLPPFTLIGATTRTGLLTSPLRDRFQ-- 178 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNLAL 224 ++ D LE ++ + I +DK A + R + +L+ ++ D + Sbjct: 179 IQERLEYYDAKALESILHRSARILGIPLDKDAAREVASRSRGTPRITNRLLRRLRDFAEV 238 Query: 225 SRGMGITRSLAAEVLKET 242 IT LA + L Sbjct: 239 EGNGRITLELAQKSLDRL 256 >gi|37360228|dbj|BAC98092.1| mKIAA1083 protein [Mus musculus] Length = 614 Score = 42.4 bits (99), Expect = 0.062, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 30/50 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S +T F+ A SL S + + ++ Sbjct: 372 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 421 >gi|309388968|gb|ADO76848.1| Recombination protein MgsA [Halanaerobium praevalens DSM 2228] Length = 447 Score = 42.1 bits (98), Expect = 0.063, Method: Composition-based stats. Identities = 34/204 (16%), Positives = 80/204 (39%), Gaps = 39/204 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 +I GP G+GK+ LA + ++++ + + K + ++ + L + + F Sbjct: 54 LIFYGPPGTGKTSLAQVIANQTEADFVKLNAVTAGVKDIREVIKKAKSNRNLYNSKTILF 113 Query: 122 -NDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 ++ H N + + +++ A T + V P L SR + + ++ Sbjct: 114 IDEI---HRFNKSQQDALLPSVEKGTIIMIGATTENPYFEVNSP-LLSR---SRIFRLEK 166 Query: 173 PDDDFLEKVIVKMFADRQ-------IFIDKKLAAYI--VQRMERSLVFAEKLVDKMDNLA 223 + D + ++ +R+ I I KL +I + + A ++ ++ Sbjct: 167 LNSDQIVLILKAALKNRKRGLGKLNIEIKPKLLNFIGQLANGD-----ARVALNTLELAV 221 Query: 224 LS---RGMGITRSLAAEVLKETQQ 244 L+ GI L +++E+ Q Sbjct: 222 LTTPPNKKGI-IKLTKTIIEESMQ 244 >gi|195327508|ref|XP_002030460.1| GM25452 [Drosophila sechellia] gi|194119403|gb|EDW41446.1| GM25452 [Drosophila sechellia] Length = 1006 Score = 42.1 bits (98), Expect = 0.063, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 28/110 (25%) Query: 47 SAIEQAVRLIDSWPSWPSRV--------------VILVGPSGSGKSCLANIWSDKSRSTR 92 +E V +++ WPSR V+L GP G+GK+ L Sbjct: 723 PGLESVVGVLEEVLMWPSRYPTIFNASPLRNQAGVLLYGPPGTGKTYL------------ 770 Query: 93 FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLM 142 S +A S + +I + P LL + ++ + ++ N +L Sbjct: 771 VSQLATSWNLRIISVKGPELL--AKYIGQSEENVRNLFNRARSARPCVLF 818 >gi|169614385|ref|XP_001800609.1| hypothetical protein SNOG_10333 [Phaeosphaeria nodorum SN15] gi|111061548|gb|EAT82668.1| hypothetical protein SNOG_10333 [Phaeosphaeria nodorum SN15] Length = 734 Score = 42.1 bits (98), Expect = 0.063, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 64/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 253 PPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 312 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + + ++M A P S Sbjct: 313 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSID-- 370 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + V I +PD +++ + + + + Sbjct: 371 -PALR-RFGRFDREVDIGIPDPTGRLEILQ--IHTKNMKLGDDV 410 Score = 39.0 bits (90), Expect = 0.55, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 52/160 (32%), Gaps = 48/160 (30%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 PSR V+ GP G+GK+ LA +++ + SNI D Sbjct: 527 PSRGVLFYGPPGTGKTLLAKAVANECAANFISIKGPELLSMWFGESESNIRDIFDKARAA 586 Query: 107 TRKPVLLEDIDLLDFND---------------TQLFHIINSIHQYDSSLLMTARTFPVSW 151 V L+++D + + QL ++ + + ++ A P Sbjct: 587 APCVVFLDELDSIAKSRGGSQGDAGGASDRVVNQLLTEMDGMTSKKNVFVIGATNRPEQL 646 Query: 152 G--------------VCLPDLCSR---LKAATVVKISLPD 174 V LPDL SR LKA PD Sbjct: 647 DNALCRPGRLDTLVYVPLPDLASRTSILKAQLRKTPVAPD 686 >gi|320163965|gb|EFW40864.1| vacuolar protein sorting factor 4B [Capsaspora owczarzaki ATCC 30864] Length = 441 Score = 42.1 bits (98), Expect = 0.063, Method: Composition-based stats. Identities = 14/32 (43%), Positives = 22/32 (68%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P R ++L GP G+GKS LA + ++++T FS Sbjct: 164 PWRGILLYGPPGTGKSYLAKAVATEAQATFFS 195 >gi|320101277|ref|YP_004176869.1| AAA family ATPase, CDC48 subfamily [Desulfurococcus mucosus DSM 2162] gi|319753629|gb|ADV65387.1| AAA family ATPase, CDC48 subfamily [Desulfurococcus mucosus DSM 2162] Length = 730 Score = 42.1 bits (98), Expect = 0.063, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 46/124 (37%), Gaps = 31/124 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTR-- 108 P + ++L GP G+GK+ LA +++ + + + L I R Sbjct: 208 PPKGILLYGPPGTGKTLLAKALANEVNAYFITINGPEIMSKYYGESEQRLREIFKLARKK 267 Query: 109 -----KPVLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPVSW 151 + +++ID + ++ QL +++ + + +++ A P + Sbjct: 268 SKKNPAIIFIDEIDAIAPKRDEVIGEVERRVVAQLLALMDGLESRGNVIVIAATNRPNAL 327 Query: 152 GVCL 155 L Sbjct: 328 DPAL 331 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 18/32 (56%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + V+L GP G GK+ LA + +S + + Sbjct: 488 PPKGVLLYGPPGCGKTLLAKAVATESGANFIA 519 >gi|281204612|gb|EFA78807.1| 26S protease regulatory subunit S10B [Polysphondylium pallidum PN500] Length = 493 Score = 42.1 bits (98), Expect = 0.063, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + + ++ ++ I V+ E Sbjct: 169 PPKGVLLYGPPGTGKTLLARAIASNLDANFLKVVSSAIVDKYIGESARVIRE 220 >gi|237740314|ref|ZP_04570795.1| holliday junction DNA helicase ruvB [Fusobacterium sp. 2_1_31] gi|229422331|gb|EEO37378.1| holliday junction DNA helicase ruvB [Fusobacterium sp. 2_1_31] Length = 338 Score = 42.1 bits (98), Expect = 0.063, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 41/183 (22%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G GK+ LA + +++ ++ L+ LE+ D+L ++ Sbjct: 55 ILLYGPPGLGKTTLAGVIANEMQANLKITSGPILEKAGDLAAILTSLEENDILFIDEI-- 112 Query: 127 FHIINS--------IHQYDSSLLMTARTFPV-SWGVCLP-----------DLCS---RLK 163 H +N+ + ++ + S + LP L S R + Sbjct: 113 -HRLNNTVEEILYPAMEDGELDIIIGKGPSAKSIRIELPPFTLIGATTRAGLLSAPLRDR 171 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKK--------------LAAYIVQRMERSL 209 K+ + D ++ +I++ + I ++ +A +++R+ R Sbjct: 172 FGVSHKMEYYNIDEIKAIIIRGAKILGVKISEEGAIEISKRSRGTPRIANRLLKRV-RDY 230 Query: 210 VFA 212 Sbjct: 231 CEI 233 >gi|167041791|gb|ABZ06533.1| putative Holliday junction DNA helicase ruvB C-terminal domain [uncultured marine microorganism HF4000_093M11] Length = 354 Score = 42.1 bits (98), Expect = 0.063, Method: Composition-based stats. Identities = 40/204 (19%), Positives = 79/204 (38%), Gaps = 33/204 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD---FND 123 V+L GP G GK+ LANI+ SR A S I +L +++ ++ Sbjct: 71 VLLSGPPGLGKTTLANIF---SREMEVPLRATSGPVIERQGDLAAILTNLEPGTIFFIDE 127 Query: 124 TQLFHIINSIHQ-------YDSSLLMTARTFP--VSWGVCLPD------------LCS-- 160 H +N + + D +L + P + + LP L S Sbjct: 128 I---HRLNRVVEEVLYGAMEDFTLDIIIGEGPGARTVKIDLPHFTLVGATTRAGLLTSPL 184 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM- 219 R + +++ D + L+ +I++ + I I ++ + + +R + A +L+ + Sbjct: 185 RERFGIQFRLNFYDPEELKTIILRAASLLGIEIVEEASLELARRARGTPRIANRLLKRCR 244 Query: 220 DNLALSRGMGITRSLAAEVLKETQ 243 D + IT L L++ + Sbjct: 245 DFADMETSGVITLPLVVRSLEKMR 268 >gi|152997260|ref|YP_001342095.1| recombination factor protein RarA [Marinomonas sp. MWYL1] gi|150838184|gb|ABR72160.1| AAA ATPase central domain protein [Marinomonas sp. MWYL1] Length = 455 Score = 42.1 bits (98), Expect = 0.063, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 25/138 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 IL GP G GK+ A + S + S + + I + + + ++ T Sbjct: 53 FILWGPPGVGKTTFAQLLSHALDAQFIEISAVMSGVKEIRAAVDQA---KQLRAMNGTQT 109 Query: 125 QLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N + + L + T L SR A V ++ Sbjct: 110 VLFVDEVHRFNKSQQDAFLPFIEDGTFLFIGATTENPAFELNSA---LLSR---ARVYRL 163 Query: 171 SLPDDDFLEKVIVKMFAD 188 P + +++V+V+ D Sbjct: 164 KTPSVEDVKQVLVRALQD 181 >gi|330506537|ref|YP_004382965.1| AAA family ATPase [Methanosaeta concilii GP-6] gi|328927345|gb|AEB67147.1| AAA family ATPase, CDC48 subfamily [Methanosaeta concilii GP-6] Length = 723 Score = 42.1 bits (98), Expect = 0.064, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 73/197 (37%), Gaps = 49/197 (24%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSIL----IDTRKP 110 V+L GP G+GK+ LA + ++ + + + L + Sbjct: 215 VLLYGPPGTGKTLLAKALASETNAHFETLSGPEIMSKYYGESEEKLRQLFKTAEEQAPSI 274 Query: 111 VLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP---------- 148 +L+++ID + QL +++ + +++ A P Sbjct: 275 ILIDEIDSIAPKREEVTGEVERRVVAQLLALMDGMETRGKVVVIAATNRPDSIDPALRRP 334 Query: 149 ----VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD-RQIFIDKKLAAYIVQ 203 + +P+ SRL+ V++I + V + FAD F+ LAA + Sbjct: 335 GRFDREIEIGVPNRQSRLE---VLQIHTRGMPLAKDVNQEKFADVTHGFVGADLAA--LA 389 Query: 204 RMERSLVFAEKLVDKMD 220 R E ++ +++ ++D Sbjct: 390 R-EAAMRAIRRVLPEID 405 Score = 40.5 bits (94), Expect = 0.24, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 16/74 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106 P R ++L GP G+GK+ LA + +S++ S + ++ Sbjct: 484 PPRGILLYGPPGTGKTMLAKAVATESQANFISIKGPEFLSKWVGESEKAVRETFRKARQA 543 Query: 107 TRKPVLLEDIDLLD 120 V L++ID + Sbjct: 544 APSVVFLDEIDSIA 557 >gi|300214751|gb|ADJ79167.1| ATPase, AAA family [Lactobacillus salivarius CECT 5713] Length = 423 Score = 42.1 bits (98), Expect = 0.064, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 73/198 (36%), Gaps = 32/198 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSR-STRFSNIA--------KSLDSILIDTRKPVLLEDID 117 +IL GP G+GK+ +A+ + ++ + R N A + ++ +LL++I Sbjct: 41 MILYGPPGTGKTSIASAIAGSTKYAFRKMNAATDSKKKLEQVVEEAKFSGTVILLLDEIH 100 Query: 118 LLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 L H+ + +L+ A T + P + SR + ++ ++ Sbjct: 101 RLTKPKQDFLLPHL-----EDGHIILIGATTENPYISIN-PAIRSR---TQIFEVHPLNE 151 Query: 176 DFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228 D + + I + D+ + I+ + + ++ ++ A S Sbjct: 152 DDIIQAINRAITDKDDGLGELPLQINDDAMHQLAIA---THGDLRSALNALELAAKSTPK 208 Query: 229 GI--TRSLAAEVLKETQQ 244 L E+++E Q Sbjct: 209 NSEGNIVLTLEIIEECMQ 226 >gi|302508151|ref|XP_003016036.1| hypothetical protein ARB_05433 [Arthroderma benhamiae CBS 112371] gi|291179605|gb|EFE35391.1| hypothetical protein ARB_05433 [Arthroderma benhamiae CBS 112371] Length = 461 Score = 42.1 bits (98), Expect = 0.064, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 67/199 (33%), Gaps = 53/199 (26%) Query: 45 VHSAIEQAVRLIDS--WP------------SWPSRVVILVGPSGSGKSCLANIWSDKSRS 90 V +Q L+++ WP P ++ GP G+GK+ LA + ++ + Sbjct: 209 VGGLNKQIEELLEAIVWPMKEADRFKKIGIKAPKGALM-YGPPGTGKTLLARACAAQTEA 267 Query: 91 TRFSNIAKSLDSILIDTRKPVL----------------LEDIDLLDFN------------ 122 T L + I ++ ++++D + Sbjct: 268 TFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPAIIFIDELDAIGTKRFDSEKSGDREV 327 Query: 123 DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDLCS-RLKAATVVKISLPDDDFL 178 + ++N D ++ A L L S RL ++ LP+++ Sbjct: 328 QRTMLELLNQLDGFASDDRVKVLAATNRIDVLDPAL--LRSGRLD--RKIEFPLPNEEAR 383 Query: 179 EKVIVKMFADRQIFIDKKL 197 +++ R++ +D K+ Sbjct: 384 AQIL--RIHSRKMTVDDKV 400 >gi|300767183|ref|ZP_07077095.1| replication-associated recombination protein A [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180402|ref|YP_003924530.1| replication-associated recombination protein A [Lactobacillus plantarum subsp. plantarum ST-III] gi|300495002|gb|EFK30158.1| replication-associated recombination protein A [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308045893|gb|ADN98436.1| replication-associated recombination protein A [Lactobacillus plantarum subsp. plantarum ST-III] Length = 449 Score = 42.1 bits (98), Expect = 0.064, Method: Composition-based stats. Identities = 35/155 (22%), Positives = 56/155 (36%), Gaps = 22/155 (14%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLD-- 120 +I GP G GK+ LA I + +++S FS + + I + D Sbjct: 52 PSLIFWGPPGVGKTTLAEIIAQQTQSHFITFSAVTSGIKEIRQIMDEAEANRDFGEKTIV 111 Query: 121 -FNDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 ++ H N + S L+ A T S+ + L SR K V+K Sbjct: 112 FIDEI---HRFNKAQQDAFLPYVERGSITLIGATTENPSFEINAA-LLSRCK-VLVLKAL 166 Query: 172 LPD--DDFLEKVIV--KMFADRQIFIDKKLAAYIV 202 PD + L+ + K F D +I + I Sbjct: 167 TPDALEAVLQGALQNPKGFPDLEITMQPDTLRLIA 201 >gi|227823319|ref|YP_002827291.1| Holliday junction DNA helicase RuvB [Sinorhizobium fredii NGR234] gi|227342320|gb|ACP26538.1| holliday junction DNA helicase RuvB [Sinorhizobium fredii NGR234] Length = 349 Score = 42.1 bits (98), Expect = 0.064, Method: Composition-based stats. Identities = 49/264 (18%), Positives = 91/264 (34%), Gaps = 43/264 (16%) Query: 4 MKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDD---LLVHSAIEQAVRLIDSWP 60 M E P+K+ D Q +R + + + +D Sbjct: 4 MTEAARLIAPEKRGEDLDATLRPQ-SLDEFTGQAEARANLKIFIEAARNRG--EALDH-- 58 Query: 61 SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120 V+ VGP G GK+ LA I + + S + LE+ D+L Sbjct: 59 ------VLFVGPPGLGKTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLF 112 Query: 121 FNDTQLFHIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDLC--------SRLKAA 165 ++ H +N + D L + P + V + DL +RL Sbjct: 113 IDEI---HRLNPAVEEILYPAMEDFQLDLIIGEGPAARSVKI-DLAKFTLVAATTRLGLL 168 Query: 166 TV---------VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216 T V+++ + LE ++ + + + + A I +R + A +L+ Sbjct: 169 TTPLRDRFGIPVRLNFYTVEELELIVRRGARLMGLGMTDEGAREIARRARGTPRIAGRLL 228 Query: 217 DKM-DNLALSRGMGITRSLAAEVL 239 ++ D ++R +TR +A E L Sbjct: 229 RRVRDFAEVARAEAVTRQIADEAL 252 >gi|222151512|ref|YP_002560668.1| hypothetical protein MCCL_1265 [Macrococcus caseolyticus JCSC5402] gi|222120637|dbj|BAH17972.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 419 Score = 42.1 bits (98), Expect = 0.064, Method: Composition-based stats. Identities = 35/199 (17%), Positives = 75/199 (37%), Gaps = 39/199 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKP-------VLLEDID 117 +IL GP G GK+ +A + + + + + + + + + +LL++I Sbjct: 41 MILYGPPGIGKTSIAQAIAGSTNLKFRQLNAVTNTKKDMQLIAEEAKMSGQVILLLDEIH 100 Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 LD D L H+ + S +L+ T + P + SR + ++ Sbjct: 101 RLDKGKQDFLLPHL-----EKGSIILIGATTSNPYHAIN---PAIRSR---TQIFELYPH 149 Query: 174 DDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLV-FAEKLVDKMDNLALS 225 D +++ + + D + + ID ++ VQ S ++ ++ LS Sbjct: 150 GDKEVKQALTRALNDDVNGYGKKDVKIDDDAVSHFVQ----SAAGDIRTALNALELAVLS 205 Query: 226 RGMG---ITRSLAAEVLKE 241 IT A + L++ Sbjct: 206 AQGDPVHITLQDAKDCLQK 224 >gi|28392844|ref|NP_786906.1| putative NTPase protein [Canine calicivirus] Length = 356 Score = 42.1 bits (98), Expect = 0.064, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 26/49 (53%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLED 115 +IL GP+G GK+ LA +++ + + S + ++D T V + D Sbjct: 151 IILTGPAGCGKTTLAYAIANRLSAQKPSVLNLNIDHHDAYTGNEVCIID 199 >gi|50344782|ref|NP_001002064.1| 26S protease regulatory subunit 6A [Danio rerio] gi|47938854|gb|AAH71390.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 3 [Danio rerio] Length = 404 Score = 42.1 bits (98), Expect = 0.064, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V++ GP G+GK+ LA + ++++T L + I ++ + Sbjct: 184 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRD 235 >gi|27881466|ref|NP_777373.1| non-structural polyprotein [Canine calicivirus] gi|55583961|sp|Q8V736|POLG_CACV4 RecName: Full=Genome polyprotein; Contains: RecName: Full=Protein p18; Contains: RecName: Full=Protein p32; Contains: RecName: Full=NTPase; AltName: Full=p39; Contains: RecName: Full=Protein p30; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; AltName: Full=p13; Contains: RecName: Full=Protease-polymerase; Short=Pro-Pol gi|18149158|dbj|BAB83601.1| non-structural polyprotein [Canine calicivirus] Length = 1929 Score = 42.1 bits (98), Expect = 0.064, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 26/49 (53%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLED 115 +IL GP+G GK+ LA +++ + + S + ++D T V + D Sbjct: 619 IILTGPAGCGKTTLAYAIANRLSAQKPSVLNLNIDHHDAYTGNEVCIID 667 >gi|294501381|ref|YP_003565081.1| holliday junction DNA helicase RuvB [Bacillus megaterium QM B1551] gi|294351318|gb|ADE71647.1| holliday junction DNA helicase RuvB [Bacillus megaterium QM B1551] Length = 333 Score = 42.1 bits (98), Expect = 0.064, Method: Composition-based stats. Identities = 41/202 (20%), Positives = 77/202 (38%), Gaps = 29/202 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G GK+ LA I +++ + +++ LE D+L ++ Sbjct: 56 VLLYGPPGLGKTTLATIIANEMGVQIRTTSGPAIERPGDLAAVLTSLEPGDVLFIDEI-- 113 Query: 127 FHIINSIHQ-------YDSSLLMTARTFPVSWGVCLPD---------------LCS--RL 162 H +N + D L + P + V L D L S R Sbjct: 114 -HRLNRSVEEVLYPAMEDFCLDIVIGKGPSARSVRL-DLPPFTLVGATTRAGLLSSPLRD 171 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-DN 221 + + ++ ++ L ++ + A + ID+K + +R + A +L+ ++ D Sbjct: 172 RFGVLSRLEYYQEEDLASIVERTAAILDVEIDEKATFEMARRARGTPRIANRLLRRVRDF 231 Query: 222 LALSRGMGITRSLAAEVLKETQ 243 + IT LA E L+ Q Sbjct: 232 AQVKGDGAITERLANEALEMLQ 253 >gi|227891074|ref|ZP_04008879.1| crossover junction endodeoxyribonuclease [Lactobacillus salivarius ATCC 11741] gi|227866948|gb|EEJ74369.1| crossover junction endodeoxyribonuclease [Lactobacillus salivarius ATCC 11741] Length = 416 Score = 42.1 bits (98), Expect = 0.064, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 73/198 (36%), Gaps = 32/198 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSR-STRFSNIA--------KSLDSILIDTRKPVLLEDID 117 +IL GP G+GK+ +A+ + ++ + R N A + ++ +LL++I Sbjct: 34 MILYGPPGTGKTSIASAIAGSTKYAFRKMNAATDSKKKLEQVVEEAKFSGTVILLLDEIH 93 Query: 118 LLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 L H+ + +L+ A T + P + SR + ++ ++ Sbjct: 94 RLTKPKQDFLLPHL-----EDGHIILIGATTENPYISIN-PAIRSR---TQIFEVHPLNE 144 Query: 176 DFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228 D + + I + D+ + I+ + + ++ ++ A S Sbjct: 145 DDIIQAINRAITDKDDGLGELPLQINDDAMHQLAIA---THGDLRSALNALELAAKSTPK 201 Query: 229 GI--TRSLAAEVLKETQQ 244 L E+++E Q Sbjct: 202 NSEGNIVLTLEIIEECMQ 219 >gi|222099137|ref|YP_002533705.1| recombination factor protein RarA/unknown domain fusion protein [Thermotoga neapolitana DSM 4359] gi|221571527|gb|ACM22339.1| recombination factor protein RarA/unknown domain fusion protein [Thermotoga neapolitana DSM 4359] Length = 599 Score = 42.1 bits (98), Expect = 0.064, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 69/168 (41%), Gaps = 27/168 (16%) Query: 67 VILVGPSGSGKS----CLANIWSDK--------SRSTRFSNIAKSLDSILIDTRKPVL-L 113 IL GP GSGK+ L ++ + + ++ K + + +K +L L Sbjct: 45 AILYGPPGSGKTSVFSLLKRYFNGEVVYLSSTVHGVSEIKSVLKRGEQMKRYGKKLLLFL 104 Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 ++I L+ N + H+ + +L+ T S+ V +P L SR ++ Sbjct: 105 DEIHRLNKNQQAVLVTHV-----ERGDIILVATTTENPSFAV-IPALLSR---CKILYFK 155 Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 ++ L +++ K + +D + +V+ E A +L++ + Sbjct: 156 PLSENDLLEIVEKAVKKLNMKLDDDVKKALVRNAE---GDARRLLNTL 200 >gi|45190341|ref|NP_984595.1| AEL265Wp [Ashbya gossypii ATCC 10895] gi|44983237|gb|AAS52419.1| AEL265Wp [Ashbya gossypii ATCC 10895] Length = 431 Score = 42.1 bits (98), Expect = 0.064, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 14/80 (17%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P+ ++L GP G+GKS LA + ++ ST FS + L S + + ++ Sbjct: 160 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSISSSDLVSKWMGESERLV---------- 209 Query: 123 DTQLFHIINSIHQYDSSLLM 142 QLF N + S++ Sbjct: 210 -KQLF---NMARENKPSIIF 225 >gi|18312110|ref|NP_558777.1| AAA family ATPase, CDC48 subfamily protein [Pyrobaculum aerophilum str. IM2] gi|18159541|gb|AAL62959.1| AAA family ATPase, possible cell division control protein cdc48 [Pyrobaculum aerophilum str. IM2] Length = 731 Score = 42.1 bits (98), Expect = 0.064, Method: Composition-based stats. Identities = 28/203 (13%), Positives = 71/203 (34%), Gaps = 37/203 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTR-- 108 P + ++L+GP G+GK+ LA ++++ + + L I + + Sbjct: 212 PPKGILLIGPPGTGKTLLAKAVANEANAYFVAINGPEIMSKYYGESEARLREIFEEAKKN 271 Query: 109 --KPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + + +++ A P + Sbjct: 272 APAIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLQERGQVIVIGATNRPDA---V 328 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 P L + + I+ PD +++ + R + + + + M A+ Sbjct: 329 DPALRRPGRFDREIWINPPDFKGRYEIL--LIHTRNMPLAPDVDLRKLAEMTHGFSGAD- 385 Query: 215 LVDKMDNLAL--SRGMGITRSLA 235 + + A + I L Sbjct: 386 -LAALAREAAMSALRRAIQSGLI 407 Score = 38.6 bits (89), Expect = 0.76, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 16/74 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P + ++L GP G+GK+ LA + +S + + + + Sbjct: 487 PPKGILLFGPPGTGKTLLAKAVATESGANFIAVRGPEIFSKWVGESEKMVREIFRKARMA 546 Query: 107 TRKPVLLEDIDLLD 120 V +++ID L Sbjct: 547 APAVVFIDEIDALA 560 >gi|67900534|ref|XP_680523.1| hypothetical protein AN7254.2 [Aspergillus nidulans FGSC A4] gi|74680687|sp|Q5AWS6|CDC48_EMENI RecName: Full=Cell division control protein 48 gi|40741970|gb|EAA61160.1| hypothetical protein AN7254.2 [Aspergillus nidulans FGSC A4] Length = 827 Score = 42.1 bits (98), Expect = 0.064, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 49/121 (40%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 262 PPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 321 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + + ++M A P S Sbjct: 322 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSIDPA 381 Query: 155 L 155 L Sbjct: 382 L 382 >gi|332375729|gb|AEE63005.1| unknown [Dendroctonus ponderosae] Length = 721 Score = 42.1 bits (98), Expect = 0.065, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 21/43 (48%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109 V+LVGP G+GK+ LA + ++ F D +L+ Sbjct: 322 VLLVGPPGTGKTLLARAVAGEAGVPFFHAAGPEFDEVLVGQGA 364 >gi|308177757|ref|YP_003917163.1| AFG1-like ATPase [Arthrobacter arilaitensis Re117] gi|307745220|emb|CBT76192.1| AFG1-like ATPase [Arthrobacter arilaitensis Re117] Length = 346 Score = 42.1 bits (98), Expect = 0.065, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 12/98 (12%) Query: 67 VILVGPSGSGKSC-LANIWSDKSR----------STRFSNIAKSLDSILIDTRKPVLLED 115 + L G G GK+ LA++W + ++ ++ V +++ Sbjct: 83 IYLDGGFGVGKTHLLASLWHAAPGRKAFGTFVEYTNLVGALSFRQTVEVLSQYSLVCIDE 142 Query: 116 IDLLDFNDTQLFH-IINSIHQYDSSLLMTARTFPVSWG 152 +L D DT L ++ + L T+ T P + G Sbjct: 143 FELDDPGDTVLMSRLMRELSDAGVKLAATSNTLPGALG 180 >gi|45384432|ref|NP_990289.1| 26S protease regulatory subunit 4 [Gallus gallus] gi|2492516|sp|Q90732|PRS4_CHICK RecName: Full=26S protease regulatory subunit 4; Short=P26s4; AltName: Full=26S proteasome AAA-ATPase subunit RPT2; AltName: Full=Proteasome 26S subunit ATPase 1 gi|1399943|gb|AAC60013.1| 26S ATPase complex subunit 4 [Gallus gallus] Length = 440 Score = 42.1 bits (98), Expect = 0.065, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 14/80 (17%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 218 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE-------- 269 Query: 123 DTQLFHIINSIHQYDSSLLM 142 + ++ S++ Sbjct: 270 ------LFRVAEEHGPSIVF 283 >gi|89068036|ref|ZP_01155453.1| ATP-dependent metalloprotease FtsH [Oceanicola granulosus HTCC2516] gi|89046275|gb|EAR52332.1| ATP-dependent metalloprotease FtsH [Oceanicola granulosus HTCC2516] Length = 635 Score = 42.1 bits (98), Expect = 0.065, Method: Composition-based stats. Identities = 32/203 (15%), Positives = 67/203 (33%), Gaps = 44/203 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 +LVGP G+GK+ LA + ++ F+ + + Sbjct: 190 ALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCI 249 Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 V +++ID + D + L + ++ + +++ A P L Sbjct: 250 VFIDEIDAVGRSRGVGYGGGNDEREQTLNQLLVEMDGFEANEGIIIVAATNRPDVLDPAL 309 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 L+ V++ PD EK++ R++ + + I+ R A Sbjct: 310 ------LRPGRFDRQVQVPNPDIKGREKILGVHA--RKVPLGPDVDLRIIARGTPGFSGA 361 Query: 213 EKLVDKMDNLALSRGMGITRSLA 235 L + ++ AL + R Sbjct: 362 -DLANLVNEAALMAAR-VGRRFV 382 >gi|66809787|ref|XP_638617.1| 26S proteasome ATPase 3 subunit [Dictyostelium discoideum AX4] gi|74996886|sp|Q54PN7|PRS6A_DICDI RecName: Full=26S protease regulatory subunit 6A homolog; AltName: Full=26S proteasome AAA-ATPase subunit RPT5; AltName: Full=Proteasome 26S subunit ATPase 3; AltName: Full=Tat-binding protein 1; Short=TBP-1 gi|60467222|gb|EAL65256.1| 26S proteasome ATPase 3 subunit [Dictyostelium discoideum AX4] Length = 421 Score = 42.1 bits (98), Expect = 0.065, Method: Composition-based stats. Identities = 26/183 (14%), Positives = 62/183 (33%), Gaps = 38/183 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + ++ ST L + I ++ Sbjct: 201 PPKGVLMYGPPGTGKTLLARACAAQTNSTYLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 260 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151 ++++D + + ++N + + ++ A Sbjct: 261 GPTIIFIDELDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDANIKVIAATNRIDIL 320 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ LP+++ ++ R++ + + + R Sbjct: 321 DPAL--LRSGRLD--RKIEFPLPNEEARAHILQ--IHSRKMNVSADVNFDELARSSEDFN 374 Query: 211 FAE 213 A+ Sbjct: 375 GAQ 377 >gi|300172649|ref|YP_003771814.1| chromosome segregation helicase [Leuconostoc gasicomitatum LMG 18811] gi|299887027|emb|CBL90995.1| Chromosome segregation helicase (Putative) [Leuconostoc gasicomitatum LMG 18811] Length = 428 Score = 42.1 bits (98), Expect = 0.065, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 55/134 (41%), Gaps = 20/134 (14%) Query: 67 VILVGPSGSGKSCLANIWS--DKSRSTRFSNIAKSLDSILIDTRKP-------VLLEDID 117 +IL GP G+GK+ +A+ + K + S + I + +LL++I Sbjct: 42 MILYGPPGTGKTSIASAIAGSSKYAFRMLNAATDSQKDLQIVAEEAKMSGTVVLLLDEIH 101 Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 L+ D L H+ + + +L+ A T V P + SR + ++ + Sbjct: 102 RLNKIKQDFLLPHL-----ESGAIILIGATTENPYINVT-PAIRSR---TQIFQVMPLTE 152 Query: 176 DFLEKVIVKMFADR 189 + ++ + + D+ Sbjct: 153 NDIKIAVKRALEDK 166 >gi|284162725|ref|YP_003401348.1| 26S proteasome subunit P45 family [Archaeoglobus profundus DSM 5631] gi|284012722|gb|ADB58675.1| 26S proteasome subunit P45 family [Archaeoglobus profundus DSM 5631] Length = 407 Score = 42.1 bits (98), Expect = 0.065, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 28/57 (49%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P + V+L GP G+GK+ LA ++K+++T + I ++ E +L Sbjct: 184 PPKGVLLYGPPGTGKTLLAKAVANKTKATFIRVVGSEFVQKYIGEGARLVREVFELA 240 >gi|62858271|ref|NP_001016453.1| spastin [Xenopus (Silurana) tropicalis] gi|89272836|emb|CAJ82090.1| spastin [Xenopus (Silurana) tropicalis] Length = 571 Score = 42.1 bits (98), Expect = 0.065, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 30/50 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S +T F+ A SL S + + ++ Sbjct: 329 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 378 >gi|150390103|ref|YP_001320152.1| Holliday junction DNA helicase B [Alkaliphilus metalliredigens QYMF] gi|172052478|sp|A6TQM5|RUVB_ALKMQ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|149949965|gb|ABR48493.1| Holliday junction DNA helicase RuvB [Alkaliphilus metalliredigens QYMF] Length = 336 Score = 42.1 bits (98), Expect = 0.065, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 75/201 (37%), Gaps = 27/201 (13%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P V+L GP G GK+ LANI +++ +++ L D+L + Sbjct: 56 PLDHVLLYGPPGLGKTTLANIIANEMNVNIKITSGPAIERPGDLAAILTNLAANDVLFID 115 Query: 123 DTQLFHIINSIHQ-------YDSSLLMTARTFPVSWGVCLP--------------DLCS- 160 + H +N + D +L + P + + L L S Sbjct: 116 EI---HRLNRTVEEVLYPAMEDFALDIIIGKGPSARSIRLDLSQFTLIGATTRAGQLSSP 172 Query: 161 -RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 R + + K+ L ++ L ++ + +ID + A I R + A +L+ ++ Sbjct: 173 LRDRFGVICKLELYNNKQLTAIVKRSARILDAYIDDEGATEIASRSRGTPRIANRLLRRV 232 Query: 220 -DNLALSRGMGITRSLAAEVL 239 D + IT+ +A E L Sbjct: 233 RDYAQVKSDGRITKRVAEEAL 253 >gi|321458492|gb|EFX69559.1| hypothetical protein DAPPUDRAFT_202764 [Daphnia pulex] Length = 697 Score = 42.1 bits (98), Expect = 0.066, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 21/43 (48%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109 V+LVGP G+GK+ LA + ++ F D IL+ Sbjct: 294 VLLVGPPGTGKTLLARAVAGEAGVPYFHAAGPEFDEILVGQGA 336 >gi|320591119|gb|EFX03558.1| cell division control protein cdc48 [Grosmannia clavigera kw1407] Length = 828 Score = 42.1 bits (98), Expect = 0.066, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 63/164 (38%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R V+L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 258 PPRGVLLFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 317 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + + ++M A P S Sbjct: 318 SPAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSIDPA 377 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L R + V I +PD +++ + + + + Sbjct: 378 LR----RFGRFDREVDIGIPDPTGRLEILQ--IHTKNMKLGDDV 415 Score = 36.7 bits (84), Expect = 2.9, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 20/38 (52%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 PSR V+ GP G+GK+ LA +++ + S L Sbjct: 532 PSRGVLFYGPPGTGKTLLAKAVANECAANFISVKGPEL 569 >gi|320583346|gb|EFW97561.1| DNA replication ATPase [Pichia angusta DL-1] Length = 769 Score = 42.1 bits (98), Expect = 0.066, Method: Composition-based stats. Identities = 43/216 (19%), Positives = 72/216 (33%), Gaps = 48/216 (22%) Query: 65 RVVILVGPSGSGKSCLANIW--SDKSRSTRFSNIAKSLDSI------------LIDTRKP 110 +IL G G+GK+ LA I + KSR S + + L Sbjct: 379 PSLILWGYPGTGKTTLARIISHATKSRFIELSATSNGISDCKRVFEEARNEYKLTKRHTI 438 Query: 111 VLLEDIDLLDFNDTQLF--HIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAAT 166 V +++I + +F H+ + + L+ T L SR Sbjct: 439 VFIDEIHRFNKAQQDIFLPHV-----EKGTITLVGATTENPSFQLNSA---LLSR---CR 487 Query: 167 VVKISLPDDDFLEKVIVKMF----ADRQIF-------IDKKLAAYIVQRMERSLVFAEKL 215 V ++ D L K++ K R++ +K+ YI + A L Sbjct: 488 VFVLNRLTSDELHKIVSKALLVINKTRKLVHNVPVLRFNKEAIGYICNIADGDSRSALNL 547 Query: 216 VDKMD-----NLALSRGM---GITRSLAAEVLKETQ 243 ++ D N +L +G + EVLK T Sbjct: 548 LELADSHFMTNYSLEQGKHVIEVNAEQLREVLKRTH 583 >gi|312285608|gb|ADQ64494.1| hypothetical protein [Bactrocera oleae] Length = 276 Score = 42.1 bits (98), Expect = 0.066, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + + ++ ++ I ++ E Sbjct: 173 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 224 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 225 ------MFNYARDHQ 233 >gi|210633172|ref|ZP_03297708.1| hypothetical protein COLSTE_01621 [Collinsella stercoris DSM 13279] gi|210159212|gb|EEA90183.1| hypothetical protein COLSTE_01621 [Collinsella stercoris DSM 13279] Length = 635 Score = 42.1 bits (98), Expect = 0.066, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 45/142 (31%), Gaps = 45/142 (31%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110 R +LVGP G+GK+ LA + ++ FS + + Sbjct: 219 RGALLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEMFVGRGAAKVRDLFKQAKEKAP 278 Query: 111 --VLLEDIDLLD---------FNDT------QLFHIINSIHQYDSSLLMTARTFPVSW-- 151 V +++ID + ND QL ++ +++ A P S Sbjct: 279 CIVFIDEIDTIGKKRDGGGFSGNDEREQTLNQLLTEMDGFDNQKGIVVLAATNRPDSLDA 338 Query: 152 ------------GVCLPDLCSR 161 V LPDL R Sbjct: 339 ALLRPGRFDRRVPVELPDLAGR 360 >gi|257059785|ref|YP_003137673.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802] gi|256589951|gb|ACV00838.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802] Length = 646 Score = 42.1 bits (98), Expect = 0.066, Method: Composition-based stats. Identities = 36/196 (18%), Positives = 61/196 (31%), Gaps = 41/196 (20%) Query: 67 VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110 V+L+GP G+GK+ LA + ++ S + D Sbjct: 206 VLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFIELFVGIGASRVRDLFDQAKTQAPCI 265 Query: 111 VLLEDIDL-----------LDFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGV 153 V ++++D + ND QL ++ +L+ A P Sbjct: 266 VFIDELDALGKSRANMGGMIGGNDEREQTLNQLLAEMDGFDPNTGVILLAATNRPEVLDP 325 Query: 154 CLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 L L R VV PD E ++ D ++ D L + R A Sbjct: 326 AL--LRPGRFDRQIVV--DRPDKSGREAILRVHAHDVRLAPDVDL-DKLAARTP-GFAGA 379 Query: 213 EKLVDKMDNLALSRGM 228 L + ++ AL Sbjct: 380 -DLANLINEAALLAAR 394 >gi|218246744|ref|YP_002372115.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801] gi|218167222|gb|ACK65959.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801] Length = 646 Score = 42.1 bits (98), Expect = 0.066, Method: Composition-based stats. Identities = 36/196 (18%), Positives = 61/196 (31%), Gaps = 41/196 (20%) Query: 67 VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110 V+L+GP G+GK+ LA + ++ S + D Sbjct: 206 VLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFIELFVGIGASRVRDLFDQAKTQAPCI 265 Query: 111 VLLEDIDL-----------LDFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGV 153 V ++++D + ND QL ++ +L+ A P Sbjct: 266 VFIDELDALGKSRANMGGMIGGNDEREQTLNQLLAEMDGFDPNTGVILLAATNRPEVLDP 325 Query: 154 CLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 L L R VV PD E ++ D ++ D L + R A Sbjct: 326 AL--LRPGRFDRQIVV--DRPDKSGREAILRVHAHDVRLAPDVDL-DKLAARTP-GFAGA 379 Query: 213 EKLVDKMDNLALSRGM 228 L + ++ AL Sbjct: 380 -DLANLINEAALLAAR 394 >gi|170692566|ref|ZP_02883728.1| AAA ATPase [Burkholderia graminis C4D1M] gi|170142222|gb|EDT10388.1| AAA ATPase [Burkholderia graminis C4D1M] Length = 466 Score = 42.1 bits (98), Expect = 0.066, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 6/89 (6%) Query: 35 CLGISRDDLLVHSAI-EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRF 93 + + D + ++ + AV +++ R V+L GP+GSGK+ LA R Sbjct: 156 DVRAAFADFIGDMSLLDSAVAALNA-----GRPVMLYGPAGSGKTYLAERLGSLLRGAVP 210 Query: 94 SNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 A + +I P++ +D + Sbjct: 211 VPYALYVAGDVIQLHDPLIHKDAEPGALP 239 >gi|294495737|ref|YP_003542230.1| ATPase AAA [Methanohalophilus mahii DSM 5219] gi|292666736|gb|ADE36585.1| AAA family ATPase, CDC48 subfamily [Methanohalophilus mahii DSM 5219] Length = 761 Score = 42.1 bits (98), Expect = 0.067, Method: Composition-based stats. Identities = 29/211 (13%), Positives = 74/211 (35%), Gaps = 57/211 (27%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILIDTRKP 110 V+L GP G+GK+ LA +++S + S ++ + + + Sbjct: 250 VLLQGPPGTGKTMLARAVANESDAYFISINGPEIMSKFYGESEQHLRQLFEDAEANAPSI 309 Query: 111 VLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLP-- 156 + L++ID + QL +++ + + + +++ A P + + L Sbjct: 310 IFLDEIDSIAPKRAEVTGEVERRVVSQLLSLMDGLKERKNVIVIGATNRPGALDMALRRP 369 Query: 157 ---DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-------AAYIVQRME 206 D +++ +PD D +++ R + + + + Y + Sbjct: 370 GRFD--------REIELRVPDTDGRLEILQ--IHTRGMPVTEDVNLEELADITYGFVGAD 419 Query: 207 -----RS--LVFAEKLVDKMDNLALSRGMGI 230 R + +++ ++D A I Sbjct: 420 IAALCREAAMSSLRRILPEIDLKAEQIPREI 450 >gi|296815108|ref|XP_002847891.1| vacuolar protein sorting-associated protein 4 [Arthroderma otae CBS 113480] gi|238840916|gb|EEQ30578.1| vacuolar protein sorting-associated protein 4 [Arthroderma otae CBS 113480] Length = 434 Score = 42.1 bits (98), Expect = 0.067, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 14/80 (17%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + ++L GP G+GKS LA + ++ ST FS + L S + + ++ Sbjct: 164 PWKGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESERLV---------- 213 Query: 123 DTQLFHIINSIHQYDSSLLM 142 QLF N + +++ Sbjct: 214 -KQLF---NMARENKPAIVF 229 >gi|171685948|ref|XP_001907915.1| hypothetical protein [Podospora anserina S mat+] gi|170942935|emb|CAP68588.1| unnamed protein product [Podospora anserina S mat+] Length = 824 Score = 42.1 bits (98), Expect = 0.067, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 64/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R V+L GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 257 PPRGVLLFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 316 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + + ++M A P S Sbjct: 317 SPAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSID-- 374 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + V I +PD +++ + + + + Sbjct: 375 -PALR-RFGRFDREVDIGVPDPTGRLEILQ--IHTKNMKLGDDV 414 >gi|119025603|ref|YP_909448.1| recombination factor protein RarA [Bifidobacterium adolescentis ATCC 15703] gi|154487065|ref|ZP_02028472.1| hypothetical protein BIFADO_00903 [Bifidobacterium adolescentis L2-32] gi|118765187|dbj|BAF39366.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703] gi|154084928|gb|EDN83973.1| hypothetical protein BIFADO_00903 [Bifidobacterium adolescentis L2-32] Length = 466 Score = 42.1 bits (98), Expect = 0.067, Method: Composition-based stats. Identities = 45/195 (23%), Positives = 77/195 (39%), Gaps = 37/195 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 +IL GP G GK+ LA I + +S ++ K + +L + ++ E + + F Sbjct: 62 IILFGPPGVGKTTLAYIVAKQSGRVFEELSAVTSGVKDVRDVLKRAHERLVSEGKETVLF 121 Query: 122 NDTQLFHIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 D + +LL + A T S+ V P L SR + VVK+ Sbjct: 122 IDE----VHRFSKSQQDALLPSVENRDVTFIAATTENPSFSVIKP-LLSR---SVVVKLE 173 Query: 172 LPDDDFLEKVIVKMFA-----DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS- 225 + D L+ +I + A D +I I + I+ RM + A K + ++ A + Sbjct: 174 SLEPDDLKTLINRAIASEHGLDNEIRITDEAVDEII-RM--AGGDARKTLTILEAAAGAL 230 Query: 226 -----RGMGITRSLA 235 R G R + Sbjct: 231 TGDKERKKGAKRPII 245 >gi|328718995|ref|XP_001946697.2| PREDICTED: ATP-dependent zinc metalloprotease YME1 homolog [Acyrthosiphon pisum] Length = 710 Score = 42.1 bits (98), Expect = 0.067, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 21/43 (48%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109 V+LVGP G+GK+ LA + ++ F D IL+ Sbjct: 310 VLLVGPPGTGKTLLARAVAGEAGVPFFHAAGSEFDEILVGQGA 352 >gi|327307154|ref|XP_003238268.1| 26S protease regulatory subunit 6A [Trichophyton rubrum CBS 118892] gi|326458524|gb|EGD83977.1| 26S protease regulatory subunit 6A [Trichophyton rubrum CBS 118892] Length = 461 Score = 42.1 bits (98), Expect = 0.067, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 67/199 (33%), Gaps = 53/199 (26%) Query: 45 VHSAIEQAVRLIDS--WP------------SWPSRVVILVGPSGSGKSCLANIWSDKSRS 90 V +Q L+++ WP P ++ GP G+GK+ LA + ++ + Sbjct: 209 VGGLNKQIEELLEAIVWPMKEADRFKKIGIKAPKGALM-YGPPGTGKTLLARACAAQTEA 267 Query: 91 TRFSNIAKSLDSILIDTRKPVL----------------LEDIDLLDFN------------ 122 T L + I ++ ++++D + Sbjct: 268 TFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPAIIFIDELDAIGTKRFDSEKSGDREV 327 Query: 123 DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDLCS-RLKAATVVKISLPDDDFL 178 + ++N D ++ A L L S RL ++ LP+++ Sbjct: 328 QRTMLELLNQLDGFASDDRVKVLAATNRIDVLDPAL--LRSGRLD--RKIEFPLPNEEAR 383 Query: 179 EKVIVKMFADRQIFIDKKL 197 +++ R++ +D K+ Sbjct: 384 AQIL--RIHSRKMTVDDKV 400 >gi|307637117|gb|ADN79567.1| ATPase [Helicobacter pylori 908] gi|325995708|gb|ADZ51113.1| ATPase [Helicobacter pylori 2018] gi|325997304|gb|ADZ49512.1| putative recombination factor protein [Helicobacter pylori 2017] Length = 391 Score = 42.1 bits (98), Expect = 0.067, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 65/179 (36%), Gaps = 21/179 (11%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI----------DTRKPVLLE 114 GP G GK+ LA I + S A + + V ++ Sbjct: 38 PHAFFYGPPGVGKTSLAQIIARSLERPILSFNATDFKLEDLRLKLKNYQNTLLKPVVFID 97 Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 + L+ + I + D +L++ A T ++ + + SR + + +++ + Sbjct: 98 ETHRLNKTQQEFLLPI---MEKDHALILGASTQDPNYSLSHA-IRSR---SFIFELTPLN 150 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233 L+++ K A + I+ Y++ S A L++ +D L+ IT Sbjct: 151 KSDLDRLCDKALALLKKQIESGAKTYLLNN---STGDARALLNLLD-LSAKIENPITLK 205 >gi|312194201|ref|YP_004014262.1| ATP-dependent metalloprotease FtsH [Frankia sp. EuI1c] gi|311225537|gb|ADP78392.1| ATP-dependent metalloprotease FtsH [Frankia sp. EuI1c] Length = 718 Score = 42.1 bits (98), Expect = 0.067, Method: Composition-based stats. Identities = 35/208 (16%), Positives = 73/208 (35%), Gaps = 39/208 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110 V+L GP G+GK+ LA + ++ S + + + Sbjct: 194 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKANAPAI 253 Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + D + L + ++ +L+ A P L Sbjct: 254 IFVDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDVKGGVILIAATNRPDILDPAL 313 Query: 156 PDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 L R VV PD + I+K+ A + I + ++ R A Sbjct: 314 --LRPGRFDRQIVV--DRPD-LLGREAILKVHA-KGKPIGPDVDLLVIARRTPGFTGA-D 366 Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKET 242 L + ++ AL + +++++L+E+ Sbjct: 367 LANVLNEAALLAARADQKMISSDLLEES 394 >gi|240273684|gb|EER37204.1| 26S protease regulatory subunit 6A-B [Ajellomyces capsulatus H143] gi|325087581|gb|EGC40891.1| 26S protease regulatory subunit 6A-B [Ajellomyces capsulatus H88] Length = 464 Score = 42.1 bits (98), Expect = 0.067, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 54/160 (33%), Gaps = 38/160 (23%) Query: 70 VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113 GP G+GK+ LA + ++ +T L + I ++ + Sbjct: 250 YGPPGTGKTLLARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPSIIFI 309 Query: 114 EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158 +++D + + ++N D ++ A L L Sbjct: 310 DELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRVKVLAATNRIDVLDPAL--L 367 Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 S RL ++ LP+++ +++ R++ +D + Sbjct: 368 RSGRLD--RKIEFPLPNEEARAQIL--RIHSRKMAVDDGV 403 >gi|186489067|ref|NP_001117440.1| 26S proteasome regulatory complex subunit p42D, putative [Arabidopsis thaliana] gi|332193952|gb|AEE32073.1| AAA-type ATPase family protein [Arabidopsis thaliana] Length = 335 Score = 42.1 bits (98), Expect = 0.067, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + V+L GP G+GK+ LA + + ++ ++ I ++ E Sbjct: 172 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIRE-------- 223 Query: 123 DTQLFHIINSIHQYD 137 + N ++ Sbjct: 224 ------MFNYAREHQ 232 >gi|158340071|ref|YP_001521241.1| transposase-associated IstB-like ATP-binding protein [Acaryochloris marina MBIC11017] gi|158310312|gb|ABW31927.1| transposase-associated IstB-like ATP-binding protein [Acaryochloris marina MBIC11017] Length = 262 Score = 42.1 bits (98), Expect = 0.067, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 44/111 (39%), Gaps = 18/111 (16%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110 R +IL GP G+GK+ L + K+ F+ + +++ D R Sbjct: 97 RSLILEGPPGTGKTHLCVSIAYKAIQNGFTARFTTATALINDLRVAHDLNLALKPYLQPN 156 Query: 111 -VLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 ++++++ L + LF +++ + +L T WG L D Sbjct: 157 VLVIDEMGYLGYGPGAADVLFQVVDQRYLKGKPILFTTNKPLKHWGRVLHD 207 >gi|145591861|ref|YP_001153863.1| AAA family ATPase, CDC48 subfamily protein [Pyrobaculum arsenaticum DSM 13514] gi|145283629|gb|ABP51211.1| AAA family ATPase, CDC48 subfamily [Pyrobaculum arsenaticum DSM 13514] Length = 737 Score = 42.1 bits (98), Expect = 0.067, Method: Composition-based stats. Identities = 17/116 (14%), Positives = 45/116 (38%), Gaps = 28/116 (24%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTR-- 108 P + ++L+GP G+GK+ LA ++++ + + L I + + Sbjct: 209 PPKGILLIGPPGTGKTLLAKAVANEANAYFVAINGPEIMSKYYGESEARLREIFEEAKKN 268 Query: 109 --KPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVS 150 + +++ID + QL +++ + + +++ A P + Sbjct: 269 APAIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLQERGQVVVIGATNRPDA 324 Score = 37.1 bits (85), Expect = 2.5, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 18/38 (47%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P + ++L GP G GK+ A + +S + + L Sbjct: 497 PPKGILLFGPPGVGKTLFAKAVATESGANFIAVRGPEL 534 >gi|90962054|ref|YP_535970.1| recombination factor protein RarA [Lactobacillus salivarius UCC118] gi|90821248|gb|ABD99887.1| ATPase, AAA family [Lactobacillus salivarius UCC118] Length = 423 Score = 42.1 bits (98), Expect = 0.067, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 55/134 (41%), Gaps = 20/134 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSR-STRFSNIA--------KSLDSILIDTRKPVLLEDID 117 +IL GP G+GK+ +A+ + ++ + R N A + ++ +LL++I Sbjct: 41 MILYGPPGTGKTSIASAIAGSTKYAFRKMNAATDSKKKLEQVVEEAKFSGTVILLLDEIH 100 Query: 118 LLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 L H+ + +L+ A T + P + SR + ++ ++ Sbjct: 101 RLTKPKQDFLLPHL-----EDGHIILIGATTENPYISIN-PAIRSR---TQIFEVHPLNE 151 Query: 176 DFLEKVIVKMFADR 189 D + + I + D+ Sbjct: 152 DDIIQAINRAITDK 165 >gi|66046406|ref|YP_236247.1| recombination factor protein RarA [Pseudomonas syringae pv. syringae B728a] gi|63257113|gb|AAY38209.1| AAA ATPase, central region [Pseudomonas syringae pv. syringae B728a] gi|330972888|gb|EGH72954.1| recombination factor protein RarA [Pseudomonas syringae pv. aceris str. M302273PT] Length = 440 Score = 42.1 bits (98), Expect = 0.067, Method: Composition-based stats. Identities = 38/210 (18%), Positives = 74/210 (35%), Gaps = 32/210 (15%) Query: 57 DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 ++ +I GP G GK+ LA + + S + + A I V + Sbjct: 40 EALEQGALHSMIFWGPPGVGKTTLAKLLAKVSDAHFETVSAVLAGVKEIRQAVEVARQQA 99 Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162 T LF H N Q D +L+ T L SR Sbjct: 100 GQYGKR-TILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154 Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLV 216 A V + D+ L K++ + + RQ+ + + A ++ + +++ Sbjct: 155 --ARVYVLKSLDEAALRKLVNRALTEERGLGKRQLTLSDEGFAILMSAAD---GDGRRML 209 Query: 217 DKMDNLA-LSR-GMGITRSLAAEVLKETQQ 244 + ++N + L+ G I L +L ++++ Sbjct: 210 NLLENASDLAEDGSEIDVGLLQSLLGDSRR 239 >gi|308063282|gb|ADO05169.1| recombination factor protein RarA [Helicobacter pylori Sat464] Length = 391 Score = 42.1 bits (98), Expect = 0.068, Method: Composition-based stats. Identities = 32/189 (16%), Positives = 70/189 (37%), Gaps = 25/189 (13%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILI--------DTRKPVLLE 114 GP G GK+ LA I + F+ L+ + + + V ++ Sbjct: 38 PHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRLKLKNYQNTLLKPVVFID 97 Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 + L+ + I + D +L++ A T ++ + + SR + + +++ + Sbjct: 98 ETHRLNKTQQEFLLPI---MEKDHALILGASTQDPNYSLSHA-IRSR---SFIFELTPLN 150 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234 L+K+ K + I+ Y++ S A L++ +D A I + Sbjct: 151 KSDLDKLCAKALTLLKKQIEPSAKTYLLNN---SAGDARALLNLLDLSA-----KIEDPI 202 Query: 235 AAEVLKETQ 243 E L+ + Sbjct: 203 TLETLQSLR 211 >gi|295396913|ref|ZP_06807037.1| AAA family ATPase [Aerococcus viridans ATCC 11563] gi|294974847|gb|EFG50550.1| AAA family ATPase [Aerococcus viridans ATCC 11563] Length = 423 Score = 42.1 bits (98), Expect = 0.068, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 54/138 (39%), Gaps = 22/138 (15%) Query: 67 VILVGPSGSGKSCLANIWSDK---------SRSTRFSNIAKSLDSILIDTRKPVLLEDID 117 +IL GP G GK+ +A+ + + + ++ ++ +LL++I Sbjct: 44 MILYGPPGIGKTSIASAIAGSTKYAFRKLNAATDSKKDLQAVVEEAKFSGGIVLLLDEIH 103 Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 LD D L H+ + L+ A T P + SR A + ++ D+ Sbjct: 104 RLDKTKQDFLLPHL-----ESGLITLIGATTENPFINTS-PAIRSR---AQIFQLEPLDE 154 Query: 176 DFLEKVIVKMF--ADRQI 191 ++ + + +DR + Sbjct: 155 ADIKIGLERALTDSDRGL 172 >gi|225560725|gb|EEH09006.1| vacuolar sorting-associated protein [Ajellomyces capsulatus G186AR] Length = 433 Score = 42.1 bits (98), Expect = 0.068, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 14/80 (17%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + ++L GP G+GKS LA + ++ ST FS + L S + + ++ Sbjct: 163 PWKAILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESERLV---------- 212 Query: 123 DTQLFHIINSIHQYDSSLLM 142 QLF N + +++ Sbjct: 213 -KQLF---NMARESRPAIIF 228 >gi|224542189|ref|ZP_03682728.1| hypothetical protein CATMIT_01364 [Catenibacterium mitsuokai DSM 15897] gi|224524880|gb|EEF93985.1| hypothetical protein CATMIT_01364 [Catenibacterium mitsuokai DSM 15897] Length = 436 Score = 42.1 bits (98), Expect = 0.068, Method: Composition-based stats. Identities = 35/202 (17%), Positives = 74/202 (36%), Gaps = 38/202 (18%) Query: 29 FFSFPRCLGISRDDL--------LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80 F+ P + D+L LV + RLI++ +I GP G GK+ L Sbjct: 8 TFNEPLPSRLRPDNLDEFVGQTHLVGKG-KILRRLIETD---SISSMIFWGPPGVGKTTL 63 Query: 81 ANIWSDKSRSTRFS-------------NIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLF 127 A I + + S+ + ++ ++ + + + +++I + + F Sbjct: 64 ARIIASHTHSSFIDFSAVTSGIKEIREVMKQAENNRVFGEKTILFVDEIHRFNKSQQDAF 123 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIV---- 183 + S +L+ A T S+ + L SR V ++ +++ + ++ Sbjct: 124 LPF---VEKGSIILIGATTENPSFEINGA-LLSR---CKVFVLNALEEEDIVSLLKHAIS 176 Query: 184 --KMFADRQIFIDKKLAAYIVQ 203 K F + +I I I Sbjct: 177 SPKGFGNMKIDISDDCLHLIAS 198 >gi|126322073|ref|XP_001368463.1| PREDICTED: similar to Werner helicase interacting protein 1 isoform 2 [Monodelphis domestica] Length = 677 Score = 42.1 bits (98), Expect = 0.068, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 47/140 (33%), Gaps = 32/140 (22%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA I ++ S+ + S S + D+ N+ Sbjct: 289 PSLILWGPPGCGKTTLAYIIANNSKKNSMRFVTLSATSAKTSD-----VRDVIKQAQNEK 343 Query: 125 QLF-----------HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 F H N Q S + A L SR V+ + Sbjct: 344 NFFKRKTILFIDEIHRFNKSQQNPSFQVNAA-------------LLSR---CRVIVLEKL 387 Query: 174 DDDFLEKVIVKMFADRQIFI 193 + ++ ++++ + + + Sbjct: 388 SAEAMKTILMRAVSSLGLRV 407 >gi|26349529|dbj|BAC38404.1| unnamed protein product [Mus musculus] Length = 568 Score = 42.1 bits (98), Expect = 0.068, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 16/83 (19%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA+I ++ S+ + S + + + D+ N+ Sbjct: 257 PSLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 311 Query: 125 QLF-----------HIINSIHQY 136 F H N Q Sbjct: 312 SFFKRKTILFIDEIHRFNKSQQD 334 >gi|83590536|ref|YP_430545.1| Holliday junction DNA helicase RuvB [Moorella thermoacetica ATCC 39073] gi|97190146|sp|Q2RHT7|RUVB_MOOTA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|83573450|gb|ABC20002.1| Holliday junction DNA helicase subunit RuvB [Moorella thermoacetica ATCC 39073] Length = 336 Score = 42.1 bits (98), Expect = 0.068, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 82/206 (39%), Gaps = 37/206 (17%) Query: 67 VILVGPSGSGKSCLANIWSD----KSRSTRFSNIAKSLDSILIDT----RKPVLLEDIDL 118 V+L GP G GK+ LA I ++ + R T + ++ D I T R + +++I Sbjct: 57 VLLYGPPGLGKTTLAGIIANELGVQLRVTSGPALERAGDLAAILTNLQPRDVLFIDEIHR 116 Query: 119 LDFNDTQLFH------IINSIHQYDS-----------SLLMTARTFPVSWGVCLPD---L 158 L ++ + +++ I L+ A T L D + Sbjct: 117 LPRQVEEILYPAMEDFVLDIILGKGPGARSIRLDLPPFTLVGATTRAGLLSSPLRDRFGI 176 Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218 SRL+ V ++ +I + Q+ I+ + A I +R + A +L+ + Sbjct: 177 NSRLEFYQVAELEE--------IIRRAATILQVAIEPEGAREIARRARGTPRVANRLLKR 228 Query: 219 M-DNLALSRGMGITRSLAAEVLKETQ 243 + D + G ITR +A E L+ Q Sbjct: 229 VRDYAEIRAGGVITREVAREALELLQ 254 >gi|116195742|ref|XP_001223683.1| hypothetical protein CHGG_04469 [Chaetomium globosum CBS 148.51] gi|88180382|gb|EAQ87850.1| hypothetical protein CHGG_04469 [Chaetomium globosum CBS 148.51] Length = 210 Score = 42.1 bits (98), Expect = 0.068, Method: Composition-based stats. Identities = 23/163 (14%), Positives = 55/163 (33%), Gaps = 38/163 (23%) Query: 70 VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113 GP G+GK+ LA + ++ +T L + I ++ + Sbjct: 52 YGPPGTGKTLLARACAAQTDATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPAIIFI 111 Query: 114 EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158 +++D + + ++N D ++ A L L Sbjct: 112 DELDAVGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRIKVIAATNRVDVLDPAL--L 169 Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 S RL ++ LP+++ +++ R++ +D+ + Sbjct: 170 RSGRLD--RKIEFPLPNEEARAQIL--KIHSRKMKVDEATVNF 208 >gi|114562972|ref|YP_750485.1| recombination factor protein RarA [Shewanella frigidimarina NCIMB 400] gi|114334265|gb|ABI71647.1| Recombination protein MgsA [Shewanella frigidimarina NCIMB 400] Length = 443 Score = 42.1 bits (98), Expect = 0.068, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 64/174 (36%), Gaps = 31/174 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 ++L GP G+GK+ LA + + + + R S + + I + + T Sbjct: 52 MLLWGPPGTGKTTLAELIAHYANAHVERISAVTSGVKDIRAAIEQAKAI---AQSRGQRT 108 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + + + + A T S+ + L SR A V I+ Sbjct: 109 LLFVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEINNA-LLSR---ARVYLINR 164 Query: 173 PDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 D + ++ + D RQ+ + +A + + S A K ++ + Sbjct: 165 LSSDEINLIVTQALVDVERGLGKRQLILPADVAKQLA---DISDGDARKALNLL 215 >gi|326429214|gb|EGD74784.1| hypothetical protein PTSG_07017 [Salpingoeca sp. ATCC 50818] Length = 552 Score = 42.1 bits (98), Expect = 0.068, Method: Composition-based stats. Identities = 30/192 (15%), Positives = 67/192 (34%), Gaps = 29/192 (15%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P R ++L GP G+GK+ +A+ ++ + F+ + + + +LE + + Sbjct: 276 PQRWLLLHGPHGTGKTAIAHALANSAG-LPFAALNMEGVDGYLGHSRAHVLEALLTAASD 334 Query: 123 DT--------------QLFHI-----INSIHQYDSSLLMTARTFPVSWGVCLPD-LCS-- 160 L H+ NS LL A +P + D + S Sbjct: 335 LACKPTDNVTPGCAVVVLEHLEAIAGHNSATDAIVDLL-HADRWPNLILIATADTIGSLN 393 Query: 161 ----RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216 R A + + P+ D ++I ++ + + + R R + + + Sbjct: 394 AQVRRTFAMPMFCL-PPNKDSRRRLITLQLSNHRTGVSDVTLLRHLVRETRLMTVPDVIQ 452 Query: 217 DKMDNLALSRGM 228 + +++R Sbjct: 453 AATNAASIARAR 464 >gi|324006203|gb|EGB75422.1| transposase domain protein [Escherichia coli MS 57-2] Length = 162 Score = 42.1 bits (98), Expect = 0.068, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 43/115 (37%), Gaps = 24/115 (20%) Query: 61 SW--PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------- 110 W V+L G SG GKS LA D + S +L + RK Sbjct: 7 DWVDAGENVLLFGASGLGKSHLAAAIVDGVVGQGYRARFYSAGELLQELRKARAQLKLNE 66 Query: 111 ----------VLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWG 152 ++++D+ + + + LF +I ++ SL++T+ WG Sbjct: 67 LLLKLDRYRVIVVDDLGYVKRDSAETGVLFELIAHRYERG-SLVITSNHPFSMWG 120 >gi|160945075|ref|ZP_02092301.1| hypothetical protein FAEPRAM212_02594 [Faecalibacterium prausnitzii M21/2] gi|158442806|gb|EDP19811.1| hypothetical protein FAEPRAM212_02594 [Faecalibacterium prausnitzii M21/2] Length = 424 Score = 42.1 bits (98), Expect = 0.068, Method: Composition-based stats. Identities = 37/202 (18%), Positives = 75/202 (37%), Gaps = 35/202 (17%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTR------------FSNIAKSLDSILIDTRKPVL 112 +I GPSG+GK+ +A I ++ S T + K + ++ + Sbjct: 40 PNMIFYGPSGTGKTTVARIIAENSGMTLHKLNGTSCGTGDIKAVLKDIGTLAAAGGILLY 99 Query: 113 LEDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK-- 169 L++I L+ L I + S L+ + T + + L SR TV + Sbjct: 100 LDEIQYLNKKQQQSLLECI----EDGSVTLIASTTENPYFYIYNA-LLSR---CTVFEFK 151 Query: 170 -ISLPD-DDFLEKVIVKMFADRQIFI--DKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 ++ D + + + ++ Q+ + D+ AY+ E + K + +D + Sbjct: 152 PLAAADVERGVRNAVQRLSEGEQVPVCMDEDACAYLA---ESAGGDLRKALGCLDFAVTA 208 Query: 226 R-----GMGITRSLAAEVLKET 242 IT + +V + T Sbjct: 209 APVENGEKRITLDMIRQVTRRT 230 >gi|113954265|ref|YP_731698.1| recombination factor protein RarA/unknown domain fusion protein [Synechococcus sp. CC9311] gi|113881616|gb|ABI46574.1| ATPase [Synechococcus sp. CC9311] Length = 733 Score = 42.1 bits (98), Expect = 0.068, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 5/74 (6%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA I + +R+ S A + + E ++ T L Sbjct: 57 LILHGPPGVGKTTLARIIATHTRAQFSSLNAVLAGVKDLREQVDAAKERLERHGLR-TIL 115 Query: 127 F----HIINSIHQY 136 F H NS Q Sbjct: 116 FIDEVHRFNSAQQD 129 >gi|91086165|ref|XP_970259.1| PREDICTED: similar to GA17483-PA [Tribolium castaneum] gi|270009883|gb|EFA06331.1| hypothetical protein TcasGA2_TC009202 [Tribolium castaneum] Length = 716 Score = 42.1 bits (98), Expect = 0.068, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 21/43 (48%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109 V+LVGP G+GK+ LA + ++ F D IL+ Sbjct: 311 VLLVGPPGTGKTLLARAVAGEAGVPFFHAAGPEFDEILVGQGA 353 >gi|19115118|ref|NP_594206.1| AAA family ATPase, unknown biological role [Schizosaccharomyces pombe 972h-] gi|74625010|sp|Q9P3U2|YKX4_SCHPO RecName: Full=Uncharacterized AAA domain-containing protein C328.04 gi|8894855|emb|CAB95999.1| AAA family ATPase, unknown biological role [Schizosaccharomyces pombe] Length = 741 Score = 42.1 bits (98), Expect = 0.068, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 30/50 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +SRS FS A SL S + + ++ Sbjct: 491 PARGMLLFGPPGTGKTMLARAVATESRSVFFSISASSLTSKFLGESEKLV 540 >gi|12841566|dbj|BAB25259.1| unnamed protein product [Mus musculus] Length = 556 Score = 42.1 bits (98), Expect = 0.068, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 30/50 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S +T F+ A SL S + + ++ Sbjct: 314 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 363 >gi|327310719|ref|YP_004337616.1| AAA family ATPase [Thermoproteus uzoniensis 768-20] gi|326947198|gb|AEA12304.1| AAA family ATPase, possible cell division control protein cdc48 [Thermoproteus uzoniensis 768-20] Length = 730 Score = 42.1 bits (98), Expect = 0.069, Method: Composition-based stats. Identities = 22/163 (13%), Positives = 58/163 (35%), Gaps = 33/163 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P + ++L GP G+GK+ LA ++++ + + + D + Sbjct: 211 PPKGILLFGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEAKLREIFDEAKKN 270 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + + +++ A P + Sbjct: 271 APAIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLQERGQIVVIGATNRPDA---V 327 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L + + I+ PD +++ R + + + Sbjct: 328 DPALRRPGRFDREIWINPPDFKGRLEILQ--IHTRNMPLSPDV 368 Score = 38.2 bits (88), Expect = 0.96, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 19/32 (59%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + ++L GP G+GK+ LA + +S + + Sbjct: 486 PPKGILLFGPPGTGKTLLAKAVATESGANFIA 517 >gi|319899072|ref|YP_004159165.1| ATPase, AAA family [Bartonella clarridgeiae 73] gi|319403036|emb|CBI76591.1| ATPase, AAA family [Bartonella clarridgeiae 73] Length = 438 Score = 42.1 bits (98), Expect = 0.069, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 63/182 (34%), Gaps = 28/182 (15%) Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDID 117 S +I GP G+GK+ +A + + ++ + S I + + Sbjct: 50 ASGSFSSMIFWGPPGTGKTTIARLLALETNFVFEQVSAIFTGISELKKIFEAA----QAR 105 Query: 118 LLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLK 163 L+ T LF H N + + +L+ T L SR Sbjct: 106 LMSGYQTLLFIDEIHRFNRAQQDSFLPFMEDGTIILVGATTENPSFELNAA---LLSR-- 160 Query: 164 AATVVKISLPDDDFLEKVIVK--MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 A V+ D++ L+ ++ + R + +D +++ + A L +++ Sbjct: 161 -ARVLTFRSHDNESLDTLLKRAEKAEGRSLPLDDHAREILIRVSDGDARVALTLAEEIWR 219 Query: 222 LA 223 +A Sbjct: 220 VA 221 >gi|317012260|gb|ADU82868.1| recombination factor protein RarA [Helicobacter pylori Lithuania75] Length = 391 Score = 42.1 bits (98), Expect = 0.069, Method: Composition-based stats. Identities = 31/189 (16%), Positives = 70/189 (37%), Gaps = 25/189 (13%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILI--------DTRKPVLLE 114 GP G GK+ LA I + F+ L+ + + + V ++ Sbjct: 38 PHAFFYGPPGVGKTSLAQIIARSLERPILLFNATDFKLEDLRLKLKNYQNTLLKPVVFID 97 Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 + L+ + I + D +L++ A T ++ + + SR + + +++ + Sbjct: 98 ETHRLNKTQQEFLLPI---MEKDHALILWASTQDPNYSLSHA-IRSR---SFIFELTPLN 150 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234 L+++ K + I+ Y++ S A L++ +D A I + Sbjct: 151 KSDLDRLCDKALTLLKKQIEPSAKTYLLNN---SAGDARALLNLLDLSA-----KIEDPI 202 Query: 235 AAEVLKETQ 243 E L+ + Sbjct: 203 TLETLQSLR 211 >gi|294656475|ref|XP_458749.2| DEHA2D06688p [Debaryomyces hansenii CBS767] gi|199431503|emb|CAG86893.2| DEHA2D06688p [Debaryomyces hansenii] Length = 852 Score = 42.1 bits (98), Expect = 0.069, Method: Composition-based stats. Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 PS V+ L GP G GK+ LA +++SR+ S Sbjct: 576 PSGVL-LWGPPGCGKTLLAKAVANESRANFIS 606 >gi|195161040|ref|XP_002021378.1| GL25293 [Drosophila persimilis] gi|194118491|gb|EDW40534.1| GL25293 [Drosophila persimilis] Length = 1008 Score = 42.1 bits (98), Expect = 0.069, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 28/110 (25%) Query: 47 SAIEQAVRLIDSWPSWPSRV--------------VILVGPSGSGKSCLANIWSDKSRSTR 92 +E V +++ WPSR V+L GP G+GK+ L Sbjct: 725 PGLESVVGVLEEVLMWPSRYPTIFNASPLRNQAGVLLYGPPGTGKTYL------------ 772 Query: 93 FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLM 142 S +A S + +I + P LL + ++ + ++ N +L Sbjct: 773 VSQLATSWNLRIISVKGPELL--AKYIGQSEENVRNLFNRARSARPCVLF 820 >gi|168001966|ref|XP_001753685.1| predicted protein [Physcomitrella patens subsp. patens] gi|162695092|gb|EDQ81437.1| predicted protein [Physcomitrella patens subsp. patens] Length = 807 Score = 42.1 bits (98), Expect = 0.069, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 60/164 (36%), Gaps = 29/164 (17%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI----------------D 106 P R ++LVGP G+GK+ LA + ++ S A + + + Sbjct: 372 PPRGILLVGPPGTGKTLLAKAVAGEADVPFISCSASEFVELYVGMGASRVRDLFARAKKE 431 Query: 107 TRKPVLLEDIDLLD-FNDTQLFHIINSIHQYDSSLLMT-------ART-----FPVSWGV 153 V +++ID + D +L + N + + L+T + T V Sbjct: 432 APSIVFIDEIDAVAKGRDGRLRSVGNDEREQTLNQLLTELDGFESSSTVIVLGATNRADV 491 Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L + +V + PD E+++ +Q+ + + Sbjct: 492 LDPALRRPGRFDRIVTVEPPDRQGREEILTVHVTKKQLPLAPDV 535 >gi|158340697|ref|YP_001521865.1| transposase-associated ATP-binding protein, putative [Acaryochloris marina MBIC11017] gi|158341091|ref|YP_001522258.1| transposase-associated ATP-binding protein, putative [Acaryochloris marina MBIC11017] gi|158310938|gb|ABW32551.1| transposase-associated ATP-binding protein, putative [Acaryochloris marina MBIC11017] gi|158311332|gb|ABW32944.1| transposase-associated ATP-binding protein, putative [Acaryochloris marina MBIC11017] Length = 249 Score = 42.1 bits (98), Expect = 0.069, Method: Composition-based stats. Identities = 26/160 (16%), Positives = 50/160 (31%), Gaps = 37/160 (23%) Query: 25 EEQLF-------FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGK 77 E QL F F ++ L+ W +++ GPSG+GK Sbjct: 56 EAQLPYGKSWTNFEFAHVPTLNPAALME-------FAQTTHWLE-SGSNILIFGPSGTGK 107 Query: 78 SCLANIWSDK------------------SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 + +++ + +D ++++D+ + Sbjct: 108 THVSSALGASIIELGKRVKFVTATTLVQQLQLAKLQLELQSLLSKLDRYDLLIIDDLGYV 167 Query: 120 DFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156 +D + LF +I + SLL+TA W P Sbjct: 168 QKSDVETSVLFELI-AHRYERKSLLITANQPFSQWDSIFP 206 >gi|110802636|ref|YP_699224.1| Holliday junction DNA helicase RuvB [Clostridium perfringens SM101] gi|123341652|sp|Q0SRN3|RUVB_CLOPS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|110683137|gb|ABG86507.1| Holliday junction DNA helicase RuvB [Clostridium perfringens SM101] Length = 346 Score = 42.1 bits (98), Expect = 0.069, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 3/70 (4%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 VIL GP G GK+ LANI +++ +++ L D+L ++ Sbjct: 56 VILYGPPGLGKTTLANIIANEMGGNLKITSGPAIERAGDLAAILTTLNTNDVLFIDEI-- 113 Query: 127 FHIINSIHQY 136 H +N + Sbjct: 114 -HRLNRSVEE 122 >gi|157103169|ref|XP_001647852.1| peroxisome assembly factor-2 (peroxisomal-type atpase 1) [Aedes aegypti] gi|108884684|gb|EAT48909.1| peroxisome assembly factor-2 (peroxisomal-type atpase 1) [Aedes aegypti] Length = 940 Score = 42.1 bits (98), Expect = 0.069, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 25/59 (42%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 P R +L GP GSGK+ LA+ + + + A L + + + + E + Sbjct: 266 PPRGFLLHGPPGSGKTLLAHAIAGQLKIGLIEIPATELVAGVSGESEERIREVFEQAAV 324 Score = 37.8 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 PS V+ L GP G GK+ LA ++++ S L ++ + + + Sbjct: 690 PSGVL-LCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYVGESERAV 738 >gi|119944996|ref|YP_942676.1| cell division protein CDC48 [Psychromonas ingrahamii 37] gi|119863600|gb|ABM03077.1| cell division control protein 48 ATPase of AAA family CDC48 subfamily [Psychromonas ingrahamii 37] Length = 732 Score = 42.1 bits (98), Expect = 0.069, Method: Composition-based stats. Identities = 24/161 (14%), Positives = 56/161 (34%), Gaps = 37/161 (22%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILIDTRKP 110 V++ GP G GK+ +A I + ++ + FS + + Sbjct: 218 VLIYGPPGCGKTLIARIIAHETEANFFSVSGPEIIHKFYGESEAHLRKIFEEAGRKGPSI 277 Query: 111 VLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158 + +++ID + QL +++ ++ + +++ A P + P L Sbjct: 278 IFIDEIDAIAPRRDQVVGEVEKRVVAQLLALMDGLNSRQNIIVIAATNLP---NLLDPAL 334 Query: 159 C--SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 R + I PD D +++ R + + + Sbjct: 335 RRPGRFDREICIPI--PDRDGRLQILE--IHTRGMPLADDV 371 Score = 36.3 bits (83), Expect = 3.7, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 20/38 (52%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P + ++L GP G GK+ +A +++S S +L Sbjct: 487 PPKGLLLCGPPGVGKTLIAKAVANESGVNVISVKGPAL 524 >gi|83766090|dbj|BAE56233.1| unnamed protein product [Aspergillus oryzae] Length = 449 Score = 42.1 bits (98), Expect = 0.069, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 14/80 (17%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + ++L GP G+GKS LA + ++ ST FS + L S + + ++ Sbjct: 179 PWKGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESERLV---------- 228 Query: 123 DTQLFHIINSIHQYDSSLLM 142 QLF N + +++ Sbjct: 229 -KQLF---NMARENKPAIIF 244 >gi|260891161|ref|ZP_05902424.1| holliday junction DNA helicase RuvB [Leptotrichia hofstadii F0254] gi|260859188|gb|EEX73688.1| holliday junction DNA helicase RuvB [Leptotrichia hofstadii F0254] Length = 336 Score = 42.1 bits (98), Expect = 0.069, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 65/189 (34%), Gaps = 30/189 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G GK+ LA + + + L+ LE+ D+L ++ Sbjct: 56 ILLYGPPGLGKTTLAGVIATEMGVNLKITTGPVLEKAGDLAAILTSLEENDILFIDEI-- 113 Query: 127 FHIINS--------IHQYDSSLLMTARTFPVS-WGVCLPD----------------LCSR 161 H +N+ + ++ + V LP L R Sbjct: 114 -HRLNTSVEEILYPAMEDGELDILIGKGPSARSIRVELPQFTLIGATTRAGQLSTPLRDR 172 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 ++ +D L+++I + I D+ I +R + A +L+ + + Sbjct: 173 FGVTHRMEYYQLED--LKEIIRRGANILNISYDEDGITEIAKRSRGTPRIANRLLKRARD 230 Query: 222 LALSRGMGI 230 AL G GI Sbjct: 231 FALVEGSGI 239 >gi|237744244|ref|ZP_04574725.1| holliday junction DNA helicase ruvB [Fusobacterium sp. 7_1] gi|256027908|ref|ZP_05441742.1| Holliday junction DNA helicase RuvB [Fusobacterium sp. D11] gi|260494172|ref|ZP_05814303.1| Holliday junction DNA helicase RuvB [Fusobacterium sp. 3_1_33] gi|289765857|ref|ZP_06525235.1| holliday junction DNA helicase ruvB [Fusobacterium sp. D11] gi|229431473|gb|EEO41685.1| holliday junction DNA helicase ruvB [Fusobacterium sp. 7_1] gi|260198318|gb|EEW95834.1| Holliday junction DNA helicase RuvB [Fusobacterium sp. 3_1_33] gi|289717412|gb|EFD81424.1| holliday junction DNA helicase ruvB [Fusobacterium sp. D11] Length = 332 Score = 42.1 bits (98), Expect = 0.069, Method: Composition-based stats. Identities = 31/196 (15%), Positives = 72/196 (36%), Gaps = 43/196 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G GK+ LA + +++ ++ L+ LE+ D+L ++ Sbjct: 55 ILLYGPPGLGKTTLAGVIANEMKANLKITSGPILEKAGDLAAILTSLEENDILFIDEI-- 112 Query: 127 FHIINS--------IHQYDSSLLMTARTFPV-SWGVCLP-----------DLCS---RLK 163 H +NS + ++ + S + LP L S R + Sbjct: 113 -HRLNSTVEEILYPAMEDGELDIIIGKGPSAKSIRIELPPFTLIGATTRAGLLSAPLRDR 171 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKK--------------LAAYIVQRMERSL 209 K+ +++ ++ +I++ + ID+ +A +++R+ R Sbjct: 172 FGVSHKMEYYNENEIKSIIIRGAKILGVKIDEDGAIEISKRSRGTPRIANRLLKRV-RDY 230 Query: 210 VFAE--KLVDKMDNLA 223 + +DK+ + Sbjct: 231 CEIKGNGTIDKLSAKS 246 >gi|225452590|ref|XP_002275755.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 491 Score = 42.1 bits (98), Expect = 0.069, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 11/85 (12%) Query: 41 DDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------ 94 +DL+ S ++ R I +W + L GP G+GKS + ++ + Sbjct: 216 EDLIAFSENQEYYRRIGR--AWKRGYL-LYGPPGTGKSTMIAAIANLLNYDVYDLELTGV 272 Query: 95 --NIAKSLDSILIDTRKPVLLEDID 117 N + + I ++ +++EDID Sbjct: 273 ENNTDLKMLLMEISSKAVIVIEDID 297 >gi|224126871|ref|XP_002319947.1| predicted protein [Populus trichocarpa] gi|222858323|gb|EEE95870.1| predicted protein [Populus trichocarpa] Length = 822 Score = 42.1 bits (98), Expect = 0.069, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 39/101 (38%), Gaps = 25/101 (24%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSR--------STRFSNIAKSLDSILID-------- 106 P ++L GP G GK+ LA+ ++++ + S ++ + + + D Sbjct: 268 PISGILLHGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRT 327 Query: 107 TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL---LMTA 144 + +++ID + N + + + LMT Sbjct: 328 APSIIFIDEIDAIASKRE------NLQREMERRIVTQLMTC 362 >gi|170786275|gb|ACB38131.1| nonstructural polyprotein [Tulane virus] Length = 1447 Score = 42.1 bits (98), Expect = 0.069, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 4/63 (6%) Query: 66 VVILVGPSGSGKS----CLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 V++L GP G GK+ LA + + ++ +S+ D + ++ ED + Sbjct: 383 VIVLAGPPGCGKTTFAKHLAQHCAKELKTGIYSHTPGVDHWDAYDNQGVMIWEDFGATNP 442 Query: 122 NDT 124 + Sbjct: 443 EEE 445 >gi|254291532|ref|ZP_04962323.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|150422596|gb|EDN14552.1| conserved hypothetical protein [Vibrio cholerae AM-19226] Length = 449 Score = 42.1 bits (98), Expect = 0.069, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 65/199 (32%), Gaps = 38/199 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G+GK+ LA + ++ + + A + I E+ L T L Sbjct: 54 MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAREN--KLSGRRTIL 111 Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172 F H N Q D ++ T L SR A V K++ Sbjct: 112 FVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKLTS 165 Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIV------QRMERSLVFAEKLVDKM 219 + + + + + AD R + + + RM + + + + Sbjct: 166 LNQQEILQALHQAIADTERGLGKVAAVFADNVLDRLAELVNGDARMSLNYLELLYDMARE 225 Query: 220 DNLALSRGMGITRSLAAEV 238 D+ I L AEV Sbjct: 226 DD---QGCKQIDLPLLAEV 241 >gi|148706482|gb|EDL38429.1| spastin, isoform CRA_b [Mus musculus] Length = 556 Score = 42.1 bits (98), Expect = 0.069, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 30/50 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S +T F+ A SL S + + ++ Sbjct: 314 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 363 >gi|320583831|gb|EFW98044.1| 26S protease subunit, putative [Pichia angusta DL-1] Length = 422 Score = 42.1 bits (98), Expect = 0.070, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + + + A ++ I ++ E Sbjct: 199 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLVRE 250 >gi|296417719|ref|XP_002838500.1| hypothetical protein [Tuber melanosporum Mel28] gi|295634439|emb|CAZ82691.1| unnamed protein product [Tuber melanosporum] Length = 609 Score = 42.1 bits (98), Expect = 0.070, Method: Composition-based stats. Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 PS V+ L GP G GK+ LA +++S + S Sbjct: 361 PSGVL-LWGPPGCGKTLLAKAVANESGANFIS 391 >gi|156937380|ref|YP_001435176.1| proteasome-activating nucleotidase [Ignicoccus hospitalis KIN4/I] gi|156566364|gb|ABU81769.1| 26S proteasome subunit P45 family [Ignicoccus hospitalis KIN4/I] Length = 400 Score = 42.1 bits (98), Expect = 0.070, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G GK+ +A + + +T + L + I ++ E Sbjct: 168 PLKGVLLYGPPGCGKTLIARAVAGEVGATFIRVVGSELVNKFIGEGARIVRE 219 >gi|110799933|ref|YP_696627.1| Holliday junction DNA helicase RuvB [Clostridium perfringens ATCC 13124] gi|168204869|ref|ZP_02630874.1| holliday junction DNA helicase RuvB [Clostridium perfringens E str. JGS1987] gi|168208648|ref|ZP_02634273.1| holliday junction DNA helicase RuvB [Clostridium perfringens B str. ATCC 3626] gi|168214132|ref|ZP_02639757.1| holliday junction DNA helicase RuvB [Clostridium perfringens CPE str. F4969] gi|168215573|ref|ZP_02641198.1| holliday junction DNA helicase RuvB [Clostridium perfringens NCTC 8239] gi|169343509|ref|ZP_02864508.1| holliday junction DNA helicase RuvB [Clostridium perfringens C str. JGS1495] gi|182624456|ref|ZP_02952240.1| holliday junction DNA helicase RuvB [Clostridium perfringens D str. JGS1721] gi|123344604|sp|Q0TP13|RUVB_CLOP1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|110674580|gb|ABG83567.1| Holliday junction DNA helicase RuvB [Clostridium perfringens ATCC 13124] gi|169298069|gb|EDS80159.1| holliday junction DNA helicase RuvB [Clostridium perfringens C str. JGS1495] gi|170663662|gb|EDT16345.1| holliday junction DNA helicase RuvB [Clostridium perfringens E str. JGS1987] gi|170712997|gb|EDT25179.1| holliday junction DNA helicase RuvB [Clostridium perfringens B str. ATCC 3626] gi|170714356|gb|EDT26538.1| holliday junction DNA helicase RuvB [Clostridium perfringens CPE str. F4969] gi|177910459|gb|EDT72836.1| holliday junction DNA helicase RuvB [Clostridium perfringens D str. JGS1721] gi|182382068|gb|EDT79547.1| holliday junction DNA helicase RuvB [Clostridium perfringens NCTC 8239] Length = 346 Score = 42.1 bits (98), Expect = 0.070, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 3/70 (4%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 VIL GP G GK+ LANI +++ +++ L D+L ++ Sbjct: 56 VILYGPPGLGKTTLANIIANEMGGNLKITSGPAIERAGDLAAILTTLNTNDVLFIDEI-- 113 Query: 127 FHIINSIHQY 136 H +N + Sbjct: 114 -HRLNRSVEE 122 >gi|73669574|ref|YP_305589.1| cell division cycle protein [Methanosarcina barkeri str. Fusaro] gi|72396736|gb|AAZ71009.1| cell division cycle protein [Methanosarcina barkeri str. Fusaro] Length = 763 Score = 42.1 bits (98), Expect = 0.070, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 17/83 (20%) Query: 32 FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--------------VILVGPSGSGK 77 + DD+ +E+ RL+ WP + V+L GP G+GK Sbjct: 479 LIEVPTVGWDDV---GGLEEVKRLLKEVVEWPLKNPESYRDIGVEAPKGVLLYGPPGTGK 535 Query: 78 SCLANIWSDKSRSTRFSNIAKSL 100 + LA + +S + + L Sbjct: 536 TLLAKAIAHESDANFITAKGSDL 558 Score = 40.9 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 44/117 (37%), Gaps = 28/117 (23%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILIDTRKP 110 V+L GP G+GK+ LA +++S + S I + + + Sbjct: 252 VLLHGPPGTGKTLLAKAVANESDAYFISINGPEIMSKYYGESERAIREIFEDAEKNAPAI 311 Query: 111 VLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 + L++ID + QL +++ + + +++ + P + V L Sbjct: 312 IFLDEIDSIAPKRAEVTGEVERRVVAQLLSLMDGLKARKNVIVIGSTNRPEALDVAL 368 >gi|283458260|ref|YP_003362879.1| putative ATPase [Rothia mucilaginosa DY-18] gi|283134294|dbj|BAI65059.1| predicted ATPase [Rothia mucilaginosa DY-18] Length = 418 Score = 42.1 bits (98), Expect = 0.071, Method: Composition-based stats. Identities = 37/202 (18%), Positives = 70/202 (34%), Gaps = 42/202 (20%) Query: 67 VILVGPSGSGKSC-LANIWSDKSR----------STRFSNIAKSLDSILIDTRKPVLLED 115 + L G G GK+ LA++W + + + + K V +++ Sbjct: 154 LYLDGGFGVGKTHLLASLWHYVEGPKAFGTFVEYTNLVGALTFRKTVEALSSYKLVCIDE 213 Query: 116 IDLLDFNDTQLFH-IINSIHQYDSSLLMTARTFPVSWG---VCLPD-------LCS---- 160 +L D DT L ++ + L+ T+ T P + G D L S Sbjct: 214 FELDDPGDTVLMSRLMRELADAGVKLVATSNTLPGALGEGRFAAEDFKREIQVLASQFEV 273 Query: 161 --------RLKAATVVKISLPDDDFLEKVIVKMFADRQIFID--KKLAAYIVQ-RMERSL 209 R + + DD + I ++F + + +D L ++ + R Sbjct: 274 HRVDGEDFRHRGLPAAPEPVADDA-FDAKIEEVFGGQTVGVDNFADLVEHLAKVHPSR-- 330 Query: 210 VFAEKLVDKMDNLALSRGMGIT 231 +L+D +D +A IT Sbjct: 331 --YRQLIDGLDGIAWRDVHPIT 350 >gi|255037439|ref|YP_003088060.1| Holliday junction DNA helicase RuvB [Dyadobacter fermentans DSM 18053] gi|254950195|gb|ACT94895.1| Holliday junction DNA helicase RuvB [Dyadobacter fermentans DSM 18053] Length = 341 Score = 42.1 bits (98), Expect = 0.071, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 73/201 (36%), Gaps = 27/201 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G GK+ L+NI +++ S LD L++ D+L ++ Sbjct: 59 VLLHGPPGLGKTTLSNIIANELGSGIKITSGPVLDKPSDLAGLLTNLQEHDVLFIDEI-- 116 Query: 127 FHIINSIHQY---------DSSLLMTARTFPVSWGVCLPD------------LCSRLKA- 164 H +N I + +++ + S + L L S L+A Sbjct: 117 -HRLNPIVEEYLYSAMEDYKIDIMLDSGPNARSIQIGLNPFTLIGATTRAGMLTSPLRAR 175 Query: 165 -ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNL 222 ++ D L ++ + + +++ A I +R + A L+ + D Sbjct: 176 FGINARLEYYDAQLLSSILKRSASILGTPLEEDAAFEIARRSRGTPRIANNLLRRTRDFA 235 Query: 223 ALSRGMGITRSLAAEVLKETQ 243 + IT ++A L+ Sbjct: 236 QVKGNGRITVAIAEMALQALD 256 >gi|261368793|ref|ZP_05981676.1| cell division protein FtsH [Subdoligranulum variabile DSM 15176] gi|282569057|gb|EFB74592.1| cell division protein FtsH [Subdoligranulum variabile DSM 15176] Length = 626 Score = 42.1 bits (98), Expect = 0.071, Method: Composition-based stats. Identities = 39/215 (18%), Positives = 67/215 (31%), Gaps = 70/215 (32%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ FS + + Sbjct: 205 VLLVGPPGTGKTLLARAVAGEAGVPFFSIAGSEFVEMFVGMGASKVRDLFKQAAEKAPCI 264 Query: 111 VLLEDID----------LLDFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151 V +++ID + ND QL ++ +++ A P S Sbjct: 265 VFIDEIDTIGKKRDGAGSIGGNDEREQTLNQLLTEMDGFDATKGVVILAATNRPESLDPA 324 Query: 152 -----------GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 V LPDL R E ++ +++ + Sbjct: 325 LTRPGRFDRRVPVELPDLKGR-----------------ESILRLHA--KKVKLGPDCDFA 365 Query: 201 IVQRMERSLVFAEKLVDKMDNLAL----SRGMGIT 231 IV RM A +L + ++ AL R +T Sbjct: 366 IVARMTPGASGA-ELANIINEAALCAVRHRRKAVT 399 >gi|225556569|gb|EEH04857.1| 26S protease regulatory subunit [Ajellomyces capsulatus G186AR] Length = 464 Score = 42.1 bits (98), Expect = 0.071, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 54/160 (33%), Gaps = 38/160 (23%) Query: 70 VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113 GP G+GK+ LA + ++ +T L + I ++ + Sbjct: 250 YGPPGTGKTLLARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPSIIFI 309 Query: 114 EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158 +++D + + ++N D ++ A L L Sbjct: 310 DELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRVKVLAATNRIDVLDPAL--L 367 Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 S RL ++ LP+++ +++ R++ +D + Sbjct: 368 RSGRLD--RKIEFPLPNEEARAQIL--RIHSRKMAVDDGV 403 >gi|224100633|ref|XP_002311954.1| predicted protein [Populus trichocarpa] gi|222851774|gb|EEE89321.1| predicted protein [Populus trichocarpa] Length = 434 Score = 42.1 bits (98), Expect = 0.071, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 47/141 (33%), Gaps = 42/141 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS----------------ILID 106 P R +L GP G+GKS LA + ++ ST FS + L S + Sbjct: 164 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFQMARDN 223 Query: 107 TRKPVLLEDIDLLDFND--------------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 + +++ID L L + + L++ A P + Sbjct: 224 APSIIFIDEIDSLCGQRGECNESEASRRIKTELLVQMQGIGNDDQKVLVLAATNTPYALD 283 Query: 153 ------------VCLPDLCSR 161 + LPDL +R Sbjct: 284 QAIRRRFDKRIYIPLPDLKAR 304 >gi|154284456|ref|XP_001543023.1| 26S protease regulatory subunit 6A [Ajellomyces capsulatus NAm1] gi|150406664|gb|EDN02205.1| 26S protease regulatory subunit 6A [Ajellomyces capsulatus NAm1] Length = 464 Score = 42.1 bits (98), Expect = 0.071, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 54/160 (33%), Gaps = 38/160 (23%) Query: 70 VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113 GP G+GK+ LA + ++ +T L + I ++ + Sbjct: 250 YGPPGTGKTLLARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPSIIFI 309 Query: 114 EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158 +++D + + ++N D ++ A L L Sbjct: 310 DELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRVKVLAATNRIDVLDPAL--L 367 Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 S RL ++ LP+++ +++ R++ +D + Sbjct: 368 RSGRLD--RKIEFPLPNEEARAQIL--RIHSRKMAVDDGV 403 >gi|153955758|ref|YP_001396523.1| Holliday junction DNA helicase RuvB [Clostridium kluyveri DSM 555] gi|219856125|ref|YP_002473247.1| hypothetical protein CKR_2782 [Clostridium kluyveri NBRC 12016] gi|189046026|sp|A5N206|RUVB_CLOK5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|254767421|sp|B9E5Q8|RUVB_CLOK1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|146348616|gb|EDK35152.1| RuvB [Clostridium kluyveri DSM 555] gi|219569849|dbj|BAH07833.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 350 Score = 42.1 bits (98), Expect = 0.071, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 13/94 (13%) Query: 43 LLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 + + + +D V+ GP G GK+ LANI + + +++ Sbjct: 42 FIEAAKNRK--EALDH--------VLFYGPPGLGKTTLANIIALEMGGNLKITSGPAIER 91 Query: 103 ILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY 136 L+D D+L ++ H +N + Sbjct: 92 AGDLAAILTGLDDRDVLFIDEI---HRLNRSVEE 122 >gi|311745415|ref|ZP_07719200.1| holliday junction DNA helicase RuvB [Algoriphagus sp. PR1] gi|126577964|gb|EAZ82184.1| holliday junction DNA helicase RuvB [Algoriphagus sp. PR1] Length = 344 Score = 42.1 bits (98), Expect = 0.071, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 3/74 (4%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P V+L GP G GK+ L++I +++ +S LD LE+ D+L + Sbjct: 55 PLDHVLLHGPPGLGKTTLSHIIANELQSGIKITSGPVLDKPSDLAGLLTNLEEGDVLFID 114 Query: 123 DTQLFHIINSIHQY 136 + H +N I + Sbjct: 115 EI---HRLNPIVEE 125 >gi|145494450|ref|XP_001433219.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124400336|emb|CAK65822.1| unnamed protein product [Paramecium tetraurelia] Length = 465 Score = 42.1 bits (98), Expect = 0.071, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 14/76 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G+GK+ LA + + T FS + L S + + ++ E Sbjct: 199 ILLYGPPGTGKTFLAKACATECEGTFFSVSSADLISKFVGESERLIKE------------ 246 Query: 127 FHIINSIHQYDSSLLM 142 + N + +++ Sbjct: 247 --LFNMARESKPTIIF 260 >gi|157167438|ref|XP_001660693.1| metalloprotease m41 ftsh [Aedes aegypti] gi|108873589|gb|EAT37814.1| metalloprotease m41 ftsh [Aedes aegypti] Length = 598 Score = 42.1 bits (98), Expect = 0.071, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 21/43 (48%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109 V+LVGP G+GK+ LA + ++ F D +L+ Sbjct: 192 VLLVGPPGTGKTLLARAVAGEAGVPFFHAAGPEFDEVLVGQGA 234 >gi|328781990|ref|XP_392923.4| PREDICTED: smallminded [Apis mellifera] Length = 939 Score = 42.1 bits (98), Expect = 0.071, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 22/52 (42%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P R +L GP G GK+ LA+ + + A L + + + + E Sbjct: 322 PPRGFLLHGPPGCGKTLLAHAIAGELGIPLLKVAAPELVTGVSGESEARIRE 373 Score = 39.0 bits (90), Expect = 0.69, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 22/46 (47%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 V+L GP G GK+ LA ++++ S L ++ + + + Sbjct: 678 VLLCGPPGCGKTLLAKAIANEAGINFISVKGPELLNMYVGESEKAV 723 >gi|319948202|ref|ZP_08022361.1| putative transcriptional regulator [Dietzia cinnamea P4] gi|319438137|gb|EFV93098.1| putative transcriptional regulator [Dietzia cinnamea P4] Length = 591 Score = 42.1 bits (98), Expect = 0.071, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 59/141 (41%), Gaps = 12/141 (8%) Query: 71 GPSGSGKSCLANIWSD-KSRSTRFSNIAKS-------LDSILIDTRKPVLLEDIDLLDFN 122 GPSGSG+S A + +R R + + + L + PV+L+DIDLL + Sbjct: 356 GPSGSGRSTTARAIAGPGARHLRLAEADDAATAWREMVAPALRERSGPVILDDIDLL--D 413 Query: 123 DTQLFHIINSIHQYDSSL-LMTARTFPVSWGVCLPDLCSRLKAA-TVVKISLPDDDFLEK 180 + L + + L ++T+R P + DLC R + + + + + Sbjct: 414 EADLRRLAARMESAGEHLVVVTSRDDPRPAVTAILDLCDRRTEVRPLHERGTEGEGIVRR 473 Query: 181 VIVKMFADRQIFIDKKLAAYI 201 ++ + A R + + ++ Sbjct: 474 MVADLAARRGMRPPTVTSRFV 494 >gi|299532556|ref|ZP_07045946.1| recombination factor protein RarA [Comamonas testosteroni S44] gi|298719503|gb|EFI60470.1| recombination factor protein RarA [Comamonas testosteroni S44] Length = 446 Score = 42.1 bits (98), Expect = 0.071, Method: Composition-based stats. Identities = 41/197 (20%), Positives = 81/197 (41%), Gaps = 30/197 (15%) Query: 68 ILVGPSGSGKSCLANIWSDKSRSTRFS---------------NIAKSLDSILIDTRKPVL 112 IL GP G GK+ +A + +D + S A++ S L+ R V Sbjct: 55 ILWGPPGVGKTTIARLMADAFDAQFISISAVLGGVKDIREAVEQAQAAQSGLLQQRTIVF 114 Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 ++++ + + F + + A T S+ V L SR A V++ Sbjct: 115 VDEVHRFNKSQQDAFLPH---VESGLFTFIGATTENPSFEVNSA-LLSR-AAVYVLQSLT 169 Query: 173 PDDDFLEKVIVKMFADRQI-FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG-- 229 PDD L++++ K A + I I+ + ++ + A +L++ ++ L+++ Sbjct: 170 PDD--LKQIVAKAQAIQAIPAIEDEALERLIAYAD---GDARRLLNTLETLSITAEQAGV 224 Query: 230 --ITRSLAAEVLKETQQ 244 IT + +VL E + Sbjct: 225 QSITDAWLLKVLGERMR 241 >gi|261404143|ref|YP_003240384.1| AAA ATPase [Paenibacillus sp. Y412MC10] gi|261280606|gb|ACX62577.1| AAA ATPase [Paenibacillus sp. Y412MC10] Length = 1148 Score = 42.1 bits (98), Expect = 0.071, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 69/183 (37%), Gaps = 24/183 (13%) Query: 47 SAIEQAVRLI--DSWPSWPSR-VVILVGPSGSGKSCLANIWS-------DKSRSTRFSNI 96 ++ A I ++ W V+++ G G GK+ +A + + D +I Sbjct: 176 ASNTFAPTRIYREALQRWSHNHVIVISGEPGVGKTTIAYLLALAYLQPDDLDGFIWAYSI 235 Query: 97 AKSLDSILIDTRKPVLLEDIDLLDF--------NDTQLFHIINSIHQYD--SSLLMTART 146 + + D ++ ++L+D F ++ QL +I I + L++T R Sbjct: 236 KDVYNMLEDDKKQVIILDDFWGSIFHNESTRRNDENQLNKLIQRIIDFGGNKRLILTTRE 295 Query: 147 FPVSWGVCL-PDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 + + G+ P L +L + A + + + ++ + + + Y+ Q Sbjct: 296 YVLRQGLQRQPMLKEKLEQYALICTVEEYSNIEKASILFQHLYSSNLHY--EYVTYLFQN 353 Query: 205 MER 207 R Sbjct: 354 CSR 356 >gi|195590190|ref|XP_002084829.1| GD14479 [Drosophila simulans] gi|194196838|gb|EDX10414.1| GD14479 [Drosophila simulans] Length = 1006 Score = 42.1 bits (98), Expect = 0.071, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 28/110 (25%) Query: 47 SAIEQAVRLIDSWPSWPSRV--------------VILVGPSGSGKSCLANIWSDKSRSTR 92 +E V +++ WPSR V+L GP G+GK+ L Sbjct: 723 PGLESVVGVLEEVLMWPSRYPTIFNASPLRNQAGVLLYGPPGTGKTYL------------ 770 Query: 93 FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLM 142 S +A S + +I + P LL + ++ + ++ N +L Sbjct: 771 VSQLATSWNLRIISVKGPELL--AKYIGQSEENVRNLFNRARSARPCVLF 818 >gi|156355133|ref|XP_001623528.1| predicted protein [Nematostella vectensis] gi|156210238|gb|EDO31428.1| predicted protein [Nematostella vectensis] Length = 284 Score = 42.1 bits (98), Expect = 0.071, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 11/66 (16%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P R V+L GP G+GK+ LA + + ST +S + L S + + ++ Sbjct: 15 PWRRVLLYGPPGTGKTRLAQAVASEVNSTFYSVSSADLISSWVGESEKLI---------- 64 Query: 123 DTQLFH 128 +LFH Sbjct: 65 -RELFH 69 >gi|87198597|ref|YP_495854.1| AAA family ATPase, CDC48 subfamily protein [Novosphingobium aromaticivorans DSM 12444] gi|87134278|gb|ABD25020.1| AAA family ATPase, CDC48 subfamily [Novosphingobium aromaticivorans DSM 12444] Length = 772 Score = 42.1 bits (98), Expect = 0.071, Method: Composition-based stats. Identities = 34/196 (17%), Positives = 73/196 (37%), Gaps = 40/196 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + V+L GP G+GK+ LA +++S ++ F + + + + Sbjct: 243 PPKGVLLHGPPGTGKTRLARAVANESDASFFTINGPEIMGSAYGESEKRLREVFEEATAN 302 Query: 107 TRKPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ +H + +++ A P + Sbjct: 303 SPSIIFIDEIDSIAPKRSEVHGEAEKRLVAQLLTLMDGLHSRSNLVVIAATNRPDAIDEA 362 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 L R VV + PD+ +++ R + + + + + R V A Sbjct: 363 LRR-PGRFDREIVVGV--PDESGRREIL--GIHTRGMPLAEDVDLQELARTTHGFVGA-- 415 Query: 215 LVDKMDNLALSRGMGI 230 D AL+R I Sbjct: 416 -----DLAALAREAAI 426 >gi|68068217|ref|XP_676018.1| cell division cycle ATPase [Plasmodium berghei strain ANKA] gi|56495516|emb|CAH99651.1| cell division cycle ATPase, putative [Plasmodium berghei] Length = 932 Score = 42.1 bits (98), Expect = 0.071, Method: Composition-based stats. Identities = 24/141 (17%), Positives = 46/141 (32%), Gaps = 43/141 (30%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILIDT 107 ++ ++L GP G GK+ LA +++ + S N+ D + Sbjct: 670 NKGILLYGPPGCGKTLLAKAIANECNANFISVKGPELLTMWFGESEANVRDLFDKARAAS 729 Query: 108 RKPVLLEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWG-- 152 + ++ID L Q+ I+ I++ + ++ A P Sbjct: 730 PCIIFFDEIDSLAKERNSNNNNDASDRVINQILTEIDGINEKKTIFIIAATNRPDILDKA 789 Query: 153 ------------VCLPDLCSR 161 + LPD SR Sbjct: 790 LTRPGRLDKLIYISLPDFKSR 810 >gi|82596542|ref|XP_726304.1| cell division cycle ATPase [Plasmodium yoelii yoelii str. 17XNL] gi|23481659|gb|EAA17869.1| putative cell division cycle ATPase [Plasmodium yoelii yoelii] Length = 1078 Score = 42.1 bits (98), Expect = 0.071, Method: Composition-based stats. Identities = 24/141 (17%), Positives = 46/141 (32%), Gaps = 43/141 (30%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILIDT 107 ++ ++L GP G GK+ LA +++ + S N+ D + Sbjct: 816 NKGILLYGPPGCGKTLLAKAIANECNANFISVKGPELLTMWFGESEANVRDLFDKARAAS 875 Query: 108 RKPVLLEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWG-- 152 + ++ID L Q+ I+ I++ + ++ A P Sbjct: 876 PCIIFFDEIDSLAKERNSNNNNDASDRVINQILTEIDGINEKKTIFIIAATNRPDILDKA 935 Query: 153 ------------VCLPDLCSR 161 + LPD SR Sbjct: 936 LTRPGRLDKLIYISLPDFKSR 956 >gi|330902594|gb|EGH33609.1| chromosomal replication initiation protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 219 Score = 42.1 bits (98), Expect = 0.072, Method: Composition-based stats. Identities = 11/78 (14%), Positives = 29/78 (37%), Gaps = 11/78 (14%) Query: 15 KQKNDQPKNKEEQLFFSFPRCLGISR----DDLLVHSAIEQAVRLIDSWPSWPSRV---- 66 +Q + + + Q+ + ++R ++ + + + A +W + Sbjct: 144 QQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAA--AWQVADNPKHGYN 201 Query: 67 -VILVGPSGSGKSCLANI 83 + L G G GK+ L + Sbjct: 202 PLFLYGGVGLGKTHLMHA 219 >gi|317402140|gb|EFV82732.1| hypothetical protein HMPREF0005_00317 [Achromobacter xylosoxidans C54] Length = 446 Score = 42.1 bits (98), Expect = 0.072, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 59/179 (32%), Gaps = 20/179 (11%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +I GP G GK+ LA + +D + + A + + D R V + + T L Sbjct: 55 MIFWGPPGVGKTTLARLMADGFDAQFIAISA--VLGGVKDIRDAVTVAQVAQGQGRRTIL 112 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSR-----LKAATVVK 169 F H N + + A T S+ V L SR L++ T + Sbjct: 113 FVDEVHRFNKAQQDAFLPYVESGLFTFIGATTENPSFEVNSA-LLSRARVYVLQSLTPEE 171 Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228 + D + D +I ID + + V+ + A + G Sbjct: 172 LQQLVDRAITAFNDGHEEDARIHIDADAREQLAAWADGDARRLISAVEVVAESAQAAGR 230 >gi|314959094|gb|EFT03196.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL002PA1] Length = 717 Score = 42.1 bits (98), Expect = 0.072, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 51/165 (30%), Gaps = 47/165 (28%) Query: 67 VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110 V+L GP G+GK+ LA + ++ S + + Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAPAI 262 Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + D + L + ++ + +L+ A P L Sbjct: 263 IFIDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDVHGGVILIAATNRPDVLDPAL 322 Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVK 184 PDL RLK V P DD L + + Sbjct: 323 LRPGRFDRQIAVEAPDLDGRLKILKVHAHGKPMADDVDLASIARR 367 >gi|154151004|ref|YP_001404622.1| proteasome-activating nucleotidase [Candidatus Methanoregula boonei 6A8] gi|166199290|sp|A7I8B8|PAN_METB6 RecName: Full=Proteasome-activating nucleotidase; Short=PAN; AltName: Full=Proteasomal ATPase; AltName: Full=Proteasome regulatory ATPase; AltName: Full=Proteasome regulatory particle gi|153999556|gb|ABS55979.1| 26S proteasome subunit P45 family [Methanoregula boonei 6A8] Length = 436 Score = 42.1 bits (98), Expect = 0.072, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P + V+L GP G+GK+ LA + ++ + + L I ++ E DL Sbjct: 211 PPKGVLLYGPPGTGKTLLAKAVAHETNAHFMRVVGSELVQKYIGEGARLVRELFDLA 267 >gi|154336677|ref|XP_001564574.1| ATPase-like protein [Leishmania braziliensis MHOM/BR/75/M2904] gi|134061609|emb|CAM38640.1| ATPase-like protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 532 Score = 42.1 bits (98), Expect = 0.072, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 20/38 (52%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P R ++L GP G+GK+ LA + + + S A L Sbjct: 182 PWRRLLLYGPPGTGKTRLAAATATEYGAVFLSVSAADL 219 >gi|294861450|gb|ADF45322.1| proteasome 26S ATPase subunit 1 [Pagothenia borchgrevinki] Length = 171 Score = 42.1 bits (98), Expect = 0.072, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 91 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 142 >gi|294861448|gb|ADF45321.1| proteasome 26S ATPase subunit 1 [Trematomus bernacchii] Length = 180 Score = 42.1 bits (98), Expect = 0.072, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 106 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 157 >gi|328720702|ref|XP_001944737.2| PREDICTED: 26S protease regulatory subunit 4-like [Acyrthosiphon pisum] Length = 438 Score = 42.1 bits (98), Expect = 0.072, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 216 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 267 >gi|326476433|gb|EGE00443.1| ATPase [Trichophyton tonsurans CBS 112818] gi|326482126|gb|EGE06136.1| 26S protease regulatory subunit 6A [Trichophyton equinum CBS 127.97] Length = 461 Score = 42.1 bits (98), Expect = 0.072, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 67/199 (33%), Gaps = 53/199 (26%) Query: 45 VHSAIEQAVRLIDS--WP------------SWPSRVVILVGPSGSGKSCLANIWSDKSRS 90 V +Q L+++ WP P ++ GP G+GK+ LA + ++ + Sbjct: 209 VGGLNKQIEELLEAIVWPMKEADRFKKIGIKAPKGALM-YGPPGTGKTLLARACAAQTEA 267 Query: 91 TRFSNIAKSLDSILIDTRKPVL----------------LEDIDLLDFN------------ 122 T L + I ++ ++++D + Sbjct: 268 TFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPAIIFIDELDAIGTKRFDSEKSGDREV 327 Query: 123 DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDLCS-RLKAATVVKISLPDDDFL 178 + ++N D ++ A L L S RL ++ LP+++ Sbjct: 328 QRTMLELLNQLDGFASDDRVKVLAATNRIDVLDPAL--LRSGRLD--RKIEFPLPNEEAR 383 Query: 179 EKVIVKMFADRQIFIDKKL 197 +++ R++ +D K+ Sbjct: 384 AQIL--RIHSRKMTVDDKV 400 >gi|322692993|gb|EFY84872.1| 26S protease regulatory subunit 6A [Metarhizium acridum CQMa 102] Length = 457 Score = 42.1 bits (98), Expect = 0.072, Method: Composition-based stats. Identities = 24/160 (15%), Positives = 54/160 (33%), Gaps = 38/160 (23%) Query: 70 VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113 GP G+GK+ LA + ++ +T L + I ++ + Sbjct: 244 YGPPGTGKTLLARACAAQTDATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPAIIFI 303 Query: 114 EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158 +++D + + ++N D ++ A L L Sbjct: 304 DELDAVGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRIKVLAATNRVDVLDPAL--L 361 Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 S RL ++ LP+++ +++ R++ ID + Sbjct: 362 RSGRLD--RKIEFPLPNEEARAQIL--KIHSRKMKIDPGV 397 >gi|313239604|emb|CBY14503.1| unnamed protein product [Oikopleura dioica] Length = 435 Score = 42.1 bits (98), Expect = 0.072, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 213 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 264 >gi|296222266|ref|XP_002757114.1| PREDICTED: 26S protease regulatory subunit 4-like [Callithrix jacchus] Length = 440 Score = 42.1 bits (98), Expect = 0.072, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 218 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 269 >gi|291386961|ref|XP_002709835.1| PREDICTED: spastin [Oryctolagus cuniculus] Length = 631 Score = 42.1 bits (98), Expect = 0.072, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 30/50 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S +T F+ A SL S + + ++ Sbjct: 389 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 438 >gi|255639927|gb|ACU20256.1| unknown [Glycine max] Length = 426 Score = 42.1 bits (98), Expect = 0.072, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 45/144 (31%), Gaps = 46/144 (31%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P V+ GP G+GK+ LA ++++ + I L + ++ Sbjct: 202 PKGVLC-YGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSK 260 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQYDSS----LLMTARTF--- 147 +++D + + I+N + +D+ +LM Sbjct: 261 KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 Query: 148 -PVSW---------GVCLPDLCSR 161 P LPDL SR Sbjct: 321 DPALLRPGRLDRKVEFGLPDLESR 344 >gi|253743929|gb|EET00205.1| 26S protease regulatory subunit 6A [Giardia intestinalis ATCC 50581] Length = 501 Score = 42.1 bits (98), Expect = 0.072, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 PS+ V+L G G+GK+ LA + ++ + A L + I +++E Sbjct: 258 PSKGVLLYGVPGTGKTALARALAHEANCSFLQLTATQLVQLYIGEGSAMVIE 309 >gi|227522807|ref|ZP_03952856.1| recombination ATPase [Lactobacillus hilgardii ATCC 8290] gi|227090008|gb|EEI25320.1| recombination ATPase [Lactobacillus hilgardii ATCC 8290] Length = 441 Score = 42.1 bits (98), Expect = 0.072, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 10/78 (12%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 +I GP GSGK+ LA I + K+++ FS + + I + + + Sbjct: 52 PSMIFWGPPGSGKTTLAEIIAKKTKAKFVTFSAVTSGIRDIRKLMKDA----EANRNMGG 107 Query: 123 DTQLF----HIINSIHQY 136 T +F H N Q Sbjct: 108 KTIVFVDEIHRFNKAQQD 125 >gi|225712344|gb|ACO12018.1| 26S protease regulatory subunit 4 [Lepeophtheirus salmonis] Length = 438 Score = 42.1 bits (98), Expect = 0.072, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 216 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 267 >gi|224051609|ref|XP_002200588.1| PREDICTED: putative 26S ATPase complex subunit 4 [Taeniopygia guttata] gi|327259152|ref|XP_003214402.1| PREDICTED: 26S protease regulatory subunit 4-like [Anolis carolinensis] Length = 440 Score = 42.1 bits (98), Expect = 0.072, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 218 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 269 >gi|255585245|ref|XP_002533324.1| 26S protease regulatory subunit, putative [Ricinus communis] gi|223526846|gb|EEF29060.1| 26S protease regulatory subunit, putative [Ricinus communis] Length = 357 Score = 42.1 bits (98), Expect = 0.072, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 45/144 (31%), Gaps = 46/144 (31%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P V+ GP G+GK+ LA ++++ + I L + ++ Sbjct: 133 PKGVLC-YGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSK 191 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQYDSS----LLMTARTF--- 147 +++D + + I+N + +D+ +LM Sbjct: 192 KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 251 Query: 148 -PVSW---------GVCLPDLCSR 161 P LPDL SR Sbjct: 252 DPALLRPGRLDRKVEFGLPDLESR 275 >gi|224088623|ref|XP_002308501.1| predicted protein [Populus trichocarpa] gi|222854477|gb|EEE92024.1| predicted protein [Populus trichocarpa] Length = 429 Score = 42.1 bits (98), Expect = 0.072, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 45/144 (31%), Gaps = 46/144 (31%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P V+ GP G+GK+ LA ++++ + I L + ++ Sbjct: 205 PKGVLC-YGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSK 263 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQYDSS----LLMTARTF--- 147 +++D + + I+N + +D+ +LM Sbjct: 264 KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 323 Query: 148 -PVSW---------GVCLPDLCSR 161 P LPDL SR Sbjct: 324 DPALLRPGRLDRKVEFGLPDLESR 347 >gi|148910381|gb|ABR18268.1| unknown [Picea sitchensis] Length = 425 Score = 42.1 bits (98), Expect = 0.072, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 45/144 (31%), Gaps = 46/144 (31%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P V+ GP G+GK+ LA ++++ + I L + ++ Sbjct: 201 PKGVLC-YGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSK 259 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQYDSS----LLMTARTF--- 147 +++D + + I+N + +D+ +LM Sbjct: 260 KACIVFFDEVDAIGGARFDDGLGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 319 Query: 148 -PVSW---------GVCLPDLCSR 161 P LPDL SR Sbjct: 320 DPALLRPGRLDRKVEFGLPDLESR 343 >gi|148906531|gb|ABR16418.1| unknown [Picea sitchensis] Length = 425 Score = 42.1 bits (98), Expect = 0.072, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 45/144 (31%), Gaps = 46/144 (31%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P V+ GP G+GK+ LA ++++ + I L + ++ Sbjct: 201 PKGVLC-YGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSK 259 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQYDSS----LLMTARTF--- 147 +++D + + I+N + +D+ +LM Sbjct: 260 KACIVFFDEVDAIGGARFDDGLGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 319 Query: 148 -PVSW---------GVCLPDLCSR 161 P LPDL SR Sbjct: 320 DPALLRPGRLDRKVEFGLPDLESR 343 >gi|242022643|ref|XP_002431748.1| 26S protease regulatory subunit, putative [Pediculus humanus corporis] gi|212517073|gb|EEB19010.1| 26S protease regulatory subunit, putative [Pediculus humanus corporis] Length = 440 Score = 42.1 bits (98), Expect = 0.072, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 218 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 269 >gi|194017275|ref|ZP_03055887.1| crossover junction endodeoxyribonuclease ATPase [Bacillus pumilus ATCC 7061] gi|194011143|gb|EDW20713.1| crossover junction endodeoxyribonuclease ATPase [Bacillus pumilus ATCC 7061] Length = 421 Score = 42.1 bits (98), Expect = 0.072, Method: Composition-based stats. Identities = 28/197 (14%), Positives = 69/197 (35%), Gaps = 32/197 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKS-------RSTRFS--NIAKSLDSILIDTRKPVLLEDID 117 +IL GP G GK+ +A + + + + ++ + + ++L+++ Sbjct: 41 MILYGPPGIGKTSIATAIAGSTSIAFRTLNAVIHNKKDMEAVAAEAKMSGQVILILDEVH 100 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 LD + +L+ A T + V P + SR + ++ + + Sbjct: 101 RLDKGKQDFLLPY---LENGMIILIGATTA-NPYHVINPAIRSR---TQIFELKPLETEQ 153 Query: 178 LEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG- 229 ++ + + D R + +D + + ++ ++ LS Sbjct: 154 IKAALTRALQDEHRGLGGYEVTVDDEAMNHFSNGCG---GDVRSALNALELAVLSTKADD 210 Query: 230 -----ITRSLAAEVLKE 241 IT + A E L++ Sbjct: 211 AGHIMITLAAAEECLQK 227 >gi|168018023|ref|XP_001761546.1| predicted protein [Physcomitrella patens subsp. patens] gi|162687230|gb|EDQ73614.1| predicted protein [Physcomitrella patens subsp. patens] Length = 425 Score = 42.1 bits (98), Expect = 0.072, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 45/144 (31%), Gaps = 46/144 (31%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P V+ GP G+GK+ LA ++++ + I L + ++ Sbjct: 201 PKGVLC-YGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSK 259 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQYDSS----LLMTARTF--- 147 +++D + + I+N + +D+ +LM Sbjct: 260 KACIVFFDEVDAIGGARFDDGLGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 319 Query: 148 -PVSW---------GVCLPDLCSR 161 P LPDL SR Sbjct: 320 DPALLRPGRLDRKVEFGLPDLESR 343 >gi|168039290|ref|XP_001772131.1| predicted protein [Physcomitrella patens subsp. patens] gi|162676594|gb|EDQ63075.1| predicted protein [Physcomitrella patens subsp. patens] Length = 769 Score = 42.1 bits (98), Expect = 0.072, Method: Composition-based stats. Identities = 29/200 (14%), Positives = 64/200 (32%), Gaps = 43/200 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+L GP G+GK+ LA + ++ FS + + Sbjct: 268 VLLYGPPGTGKTLLAKAIAGEAGVPFFSASGAEFVEMFVGVAAARVRDLFTRARQFAPSI 327 Query: 111 VLLEDIDLLDF-------------NDTQLFHIINS---IHQYDSSLLMTARTFPVSWGVC 154 V +++ID + + L I+ S +L+ T + Sbjct: 328 VFIDEIDAIGAKRGGPDVGGGGVEREQGLIQILTELDGFQSQGSKVLVVGAT--NRLDML 385 Query: 155 LPDLCSRLKAAT---VVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI--VQRMERSL 209 P L L+ + I LP ++ ++ ++ +K+ + + + Sbjct: 386 DPAL---LRKGRFDKTISIGLPSEEGRLAILQVHSRNKGFKSEKEKQELLKELASITFDY 442 Query: 210 VFAEKLVDKMDNLALSRGMG 229 A +L + ++ A+ Sbjct: 443 SGA-ELQNVLNEAAILAARK 461 >gi|168040186|ref|XP_001772576.1| predicted protein [Physcomitrella patens subsp. patens] gi|162676131|gb|EDQ62618.1| predicted protein [Physcomitrella patens subsp. patens] Length = 425 Score = 42.1 bits (98), Expect = 0.072, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 45/144 (31%), Gaps = 46/144 (31%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P V+ GP G+GK+ LA ++++ + I L + ++ Sbjct: 201 PKGVLC-YGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSK 259 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQYDSS----LLMTARTF--- 147 +++D + + I+N + +D+ +LM Sbjct: 260 KACIVFFDEVDAIGGARFDDGLGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 319 Query: 148 -PVSW---------GVCLPDLCSR 161 P LPDL SR Sbjct: 320 DPALLRPGRLDRKVEFGLPDLESR 343 >gi|225441955|ref|XP_002263826.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|297742918|emb|CBI35785.3| unnamed protein product [Vitis vinifera] Length = 426 Score = 42.1 bits (98), Expect = 0.072, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 45/144 (31%), Gaps = 46/144 (31%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P V+ GP G+GK+ LA ++++ + I L + ++ Sbjct: 202 PKGVLC-YGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSK 260 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQYDSS----LLMTARTF--- 147 +++D + + I+N + +D+ +LM Sbjct: 261 KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 Query: 148 -PVSW---------GVCLPDLCSR 161 P LPDL SR Sbjct: 321 DPALLRPGRLDRKVEFGLPDLESR 344 >gi|156551041|ref|XP_001604655.1| PREDICTED: similar to 26S proteasome regulatory chain 4 [Nasonia vitripennis] Length = 464 Score = 42.1 bits (98), Expect = 0.072, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 218 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 269 >gi|156718142|ref|NP_001096576.1| ATPase WRNIP1 [Bos taurus] gi|151553722|gb|AAI50137.1| Werner helicase interacting protein 1 [Bos taurus] Length = 638 Score = 42.1 bits (98), Expect = 0.072, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 16/83 (19%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA+I ++ S+ ++ + K + D+ N+ Sbjct: 235 PSLILWGPPGCGKTTLAHIIANNSKKHSI-----RFVTLSATSAKTTDVRDVIKQAQNEK 289 Query: 125 QLF-----------HIINSIHQY 136 + F H N Q Sbjct: 290 RFFKRKTILFIDEIHRFNKSQQD 312 >gi|152977760|ref|YP_001343389.1| recombination factor protein RarA [Actinobacillus succinogenes 130Z] gi|150839483|gb|ABR73454.1| AAA ATPase central domain protein [Actinobacillus succinogenes 130Z] Length = 439 Score = 42.1 bits (98), Expect = 0.072, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 55/146 (37%), Gaps = 23/146 (15%) Query: 54 RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILI------ 105 RLI++ +I GP G GK+ LA I ++ +++ FS + + I Sbjct: 43 RLIENDQ---ISSMIFWGPPGVGKTTLAQIIANSTQAGFIEFSAVTSGIKDIRAIMQQAE 99 Query: 106 -----DTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 + V +++I + F + S +L+ A T S+ + L S Sbjct: 100 QNRRYGAKTIVFVDEIHRFNKAQQDAFLPF---VEKGSIVLIGATTENPSFEINGA-LLS 155 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMF 186 R V + + + K++ + Sbjct: 156 R---CKVFVLQPLETADIVKLLQRAL 178 >gi|126303140|ref|XP_001371504.1| PREDICTED: similar to spastin protein isoform 1 [Monodelphis domestica] Length = 619 Score = 42.1 bits (98), Expect = 0.072, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 30/50 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S +T F+ A SL S + + ++ Sbjct: 377 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 426 >gi|119585865|gb|EAW65461.1| hCG16327, isoform CRA_a [Homo sapiens] Length = 251 Score = 42.1 bits (98), Expect = 0.072, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 175 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 226 >gi|119585866|gb|EAW65462.1| hCG16327, isoform CRA_b [Homo sapiens] Length = 294 Score = 42.1 bits (98), Expect = 0.072, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 218 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 269 >gi|114654363|ref|XP_001142024.1| PREDICTED: 26S protease regulatory subunit 4 isoform 1 [Pan troglodytes] gi|297298439|ref|XP_002805227.1| PREDICTED: 26S protease regulatory subunit 4 isoform 2 [Macaca mulatta] gi|332223520|ref|XP_003260921.1| PREDICTED: 26S protease regulatory subunit 4 isoform 2 [Nomascus leucogenys] gi|194386730|dbj|BAG61175.1| unnamed protein product [Homo sapiens] Length = 367 Score = 42.1 bits (98), Expect = 0.072, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 145 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 196 >gi|62896895|dbj|BAD96388.1| proteasome 26S ATPase subunit 1 variant [Homo sapiens] Length = 440 Score = 42.1 bits (98), Expect = 0.072, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 218 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 269 >gi|6652878|gb|AAF22521.1|AF123390_1 26S proteasome AAA-ATPase subunit RPT1a [Arabidopsis thaliana] Length = 426 Score = 42.1 bits (98), Expect = 0.072, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 45/144 (31%), Gaps = 46/144 (31%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P V+ GP G+GK+ LA ++++ + I L + ++ Sbjct: 202 PKGVLC-YGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSK 260 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQYDSS----LLMTARTF--- 147 +++D + + I+N + +D+ +LM Sbjct: 261 KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 Query: 148 -PVSW---------GVCLPDLCSR 161 P LPDL SR Sbjct: 321 DPALLRSGRLDRKVEFGLPDLESR 344 >gi|28932716|gb|AAO60052.1| proteasome-like protein [Rhipicephalus appendiculatus] Length = 397 Score = 42.1 bits (98), Expect = 0.072, Method: Composition-based stats. Identities = 14/86 (16%), Positives = 31/86 (36%), Gaps = 14/86 (16%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + + ++ ++ I ++ E Sbjct: 174 PPKGCLLYGPPGTGKTLLARAVASQIEANFLKVVSSAIVDKYIGESARLIRE-------- 225 Query: 123 DTQLFHIINSIHQYDSSLLMTARTFP 148 + N + ++ T P Sbjct: 226 ------MFNYARDHQPCVIFMDETMP 245 >gi|15220930|ref|NP_175778.1| RPT1A (REGULATORY PARTICLE TRIPLE-A 1A); ATPase [Arabidopsis thaliana] gi|297853156|ref|XP_002894459.1| regulatory particle triple-a 1A [Arabidopsis lyrata subsp. lyrata] gi|28558169|sp|Q9SSB5|PRS7A_ARATH RecName: Full=26S protease regulatory subunit 7 homolog A; AltName: Full=26S proteasome AAA-ATPase subunit RPT1a; AltName: Full=26S proteasome subunit 7 homolog A; AltName: Full=Regulatory particle triple-A ATPase subunit 1a gi|6056388|gb|AAF02852.1|AC009324_1 26S proteasome ATPase subunit [Arabidopsis thaliana] gi|12324021|gb|AAG51970.1|AC024260_8 26S proteasome ATPase subunit; 3861-6264 [Arabidopsis thaliana] gi|17065568|gb|AAL32938.1| 26S proteasome ATPase subunit [Arabidopsis thaliana] gi|23197722|gb|AAN15388.1| 26S proteasome ATPase subunit [Arabidopsis thaliana] gi|297340301|gb|EFH70718.1| regulatory particle triple-a 1A [Arabidopsis lyrata subsp. lyrata] gi|332194871|gb|AEE32992.1| regulatory particle triple-A 1A [Arabidopsis thaliana] Length = 426 Score = 42.1 bits (98), Expect = 0.072, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 45/144 (31%), Gaps = 46/144 (31%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P V+ GP G+GK+ LA ++++ + I L + ++ Sbjct: 202 PKGVLC-YGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSK 260 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQYDSS----LLMTARTF--- 147 +++D + + I+N + +D+ +LM Sbjct: 261 KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 Query: 148 -PVSW---------GVCLPDLCSR 161 P LPDL SR Sbjct: 321 DPALLRPGRLDRKVEFGLPDLESR 344 >gi|3914449|sp|O64982|PRS7_PRUPE RecName: Full=26S protease regulatory subunit 7; AltName: Full=26S proteasome AAA-ATPase subunit RPT1; AltName: Full=26S proteasome subunit 7; AltName: Full=Regulatory particle triple-A ATPase subunit 1 gi|3172331|gb|AAC18523.1| 26S proteasome subunit 7 [Prunus persica] Length = 425 Score = 42.1 bits (98), Expect = 0.072, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 45/144 (31%), Gaps = 46/144 (31%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P V+ GP G+GK+ LA ++++ + I L + ++ Sbjct: 201 PKGVLC-YGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSK 259 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQYDSS----LLMTARTF--- 147 +++D + + I+N + +D+ +LM Sbjct: 260 KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 319 Query: 148 -PVSW---------GVCLPDLCSR 161 P LPDL SR Sbjct: 320 DPALLRPGRLDRKVEFGLPDLESR 343 >gi|15239140|ref|NP_199115.1| RPT4A; ATPase [Arabidopsis thaliana] gi|75337115|sp|Q9SEI3|PS10A_ARATH RecName: Full=26S protease regulatory subunit 10B homolog A; AltName: Full=26S proteasome AAA-ATPase subunit RPT4a; AltName: Full=26S proteasome subunit 10B homolog A; AltName: Full=Regulatory particle triple-A ATPase subunit 4a gi|6652884|gb|AAF22524.1|AF123393_1 26S proteasome AAA-ATPase subunit RPT4a [Arabidopsis thaliana] gi|13937183|gb|AAK50085.1|AF372945_1 AT5g43010/MBD2_21 [Arabidopsis thaliana] gi|9758590|dbj|BAB09203.1| 26S proteasome AAA-ATPase subunit RPT4a [Arabidopsis thaliana] gi|18700262|gb|AAL77741.1| AT5g43010/MBD2_21 [Arabidopsis thaliana] gi|332007517|gb|AED94900.1| regulatory particle triple-A ATPase 4A [Arabidopsis thaliana] Length = 399 Score = 42.1 bits (98), Expect = 0.072, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + V+L GP G+GK+ LA + + ++ ++ I ++ E Sbjct: 172 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIRE-------- 223 Query: 123 DTQLFHIINSIHQYD 137 + N ++ Sbjct: 224 ------MFNYAREHQ 232 >gi|320104949|ref|YP_004180540.1| Chromosomal replication initiator DnaA [Isosphaera pallida ATCC 43644] gi|319752231|gb|ADV63991.1| Chromosomal replication initiator DnaA [Isosphaera pallida ATCC 43644] Length = 439 Score = 42.1 bits (98), Expect = 0.073, Method: Composition-based stats. Identities = 26/185 (14%), Positives = 58/185 (31%), Gaps = 47/185 (25%) Query: 67 VILVGPSGSGKSC----LANIWSDKSRSTRFSNIAKSLDSILIDTR-------------- 108 ++L GP G GK+ LA W D + + +A S + R Sbjct: 97 LVLFGPPGVGKTRVLAGLAGDWLDAAAGRELTFVASSPPQSEVVARHRTVWMTAEGFGTA 156 Query: 109 ----------------------KPVLLEDIDLLDFN---DTQLFHIINSIHQYDSSLLMT 143 + L+D++ L + +L ++++ ++ +T Sbjct: 157 CERAERAGIAGWERLRRRIRSVGLLALDDLEGLRASRVAQRELIATLDALREHGGVAAVT 216 Query: 144 ARTFPVSWGVC--LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ--IFIDKKLAA 199 AR P L +RL V++ P + + ++ + ++ Sbjct: 217 ARGSPARLAAQGWSRRLVNRLVGGLAVRLEPPSLETRRRAALERAGQIGSVVVLNTDAIE 276 Query: 200 YIVQR 204 ++ Sbjct: 277 WLAAH 281 >gi|315082721|gb|EFT54697.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL027PA2] Length = 717 Score = 42.1 bits (98), Expect = 0.073, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 51/165 (30%), Gaps = 47/165 (28%) Query: 67 VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110 V+L GP G+GK+ LA + ++ S + + Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAPAI 262 Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + D + L + ++ + +L+ A P L Sbjct: 263 IFIDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDVHGGVILIAATNRPDVLDPAL 322 Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVK 184 PDL RLK V P DD L + + Sbjct: 323 LRPGRFDRQIAVEAPDLDGRLKILKVHAHGKPMADDVDLASIARR 367 >gi|313793175|gb|EFS41242.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL110PA1] gi|315078396|gb|EFT50427.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL053PA2] gi|327457122|gb|EGF03777.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL092PA1] Length = 717 Score = 42.1 bits (98), Expect = 0.073, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 51/165 (30%), Gaps = 47/165 (28%) Query: 67 VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110 V+L GP G+GK+ LA + ++ S + + Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAPAI 262 Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + D + L + ++ + +L+ A P L Sbjct: 263 IFIDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDVHGGVILIAATNRPDVLDPAL 322 Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVK 184 PDL RLK V P DD L + + Sbjct: 323 LRPGRFDRQIAVEAPDLDGRLKILKVHAHGKPMADDVDLASIARR 367 >gi|290769987|gb|ADD61754.1| putative protein [uncultured organism] Length = 440 Score = 42.1 bits (98), Expect = 0.073, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 62/172 (36%), Gaps = 27/172 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 VI GP G+GK+ LA I ++ + + A ++ +++ + T L Sbjct: 55 VIFYGPPGTGKTTLARIIANTTSAEFNQVNATVAGKKDMEEVVAKAKDNL-GMYGRKTIL 113 Query: 127 F----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N + + +L+ A T + V L SR + + ++ + Sbjct: 114 FVDEIHRFNKGQQDYLLPFVEDGTIILIGATTENPYFEVNGA-LISR---SIIFELKPLE 169 Query: 175 DDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 + ++ +I + D ID ++ + S A ++ + Sbjct: 170 KEDIKTIIKRAVYDEKKGMGSYNAAIDDDALEFLA---DISNGDARNALNAI 218 >gi|291333224|gb|ADD92934.1| putative ATPase family associated with various cellular activities AAA [uncultured archaeon MedDCM-OCT-S04-C14] Length = 406 Score = 42.1 bits (98), Expect = 0.073, Method: Composition-based stats. Identities = 27/154 (17%), Positives = 54/154 (35%), Gaps = 40/154 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V+LVGP G GK+ LA ++ + +T + L I ++ Sbjct: 181 PPKGVLLVGPPGCGKTLLAKAVANHTNATFIRMVGSELAQKYIGEGGRMVRELFSLAKEK 240 Query: 113 ------LEDIDLLD---------FNDTQLFHIINSIHQYDSS------LLMTARTFPVSW 151 L++ID + + ++ + + D ++ A P Sbjct: 241 APSVIFLDEIDAIGAKRLDGSTSGDREVQRTLMQLLAELDGFDALKDVKIIAATNRPDIL 300 Query: 152 GVCLPDLCSRLKAA---TVVKISLPDDDFLEKVI 182 L L+ V++I +PDD + ++ Sbjct: 301 DDAL------LRPGRFDRVIEIPIPDDASRKAIL 328 >gi|171186069|ref|YP_001794988.1| AAA family ATPase, CDC48 subfamily protein [Thermoproteus neutrophilus V24Sta] gi|170935281|gb|ACB40542.1| AAA family ATPase, CDC48 subfamily [Thermoproteus neutrophilus V24Sta] Length = 737 Score = 42.1 bits (98), Expect = 0.073, Method: Composition-based stats. Identities = 17/116 (14%), Positives = 45/116 (38%), Gaps = 28/116 (24%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTR-- 108 P + ++L+GP G+GK+ LA ++++ + + L I + + Sbjct: 209 PPKGILLIGPPGTGKTLLAKAVANEANAYFVAINGPEIMSKYYGESEARLREIFEEAKKN 268 Query: 109 --KPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVS 150 + +++ID + QL +++ + + +++ A P + Sbjct: 269 APAIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLQERGQVVVIGATNRPDA 324 Score = 36.7 bits (84), Expect = 2.7, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 18/38 (47%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P + ++L GP G GK+ A + +S + + L Sbjct: 497 PPKGILLFGPPGVGKTLFAKAVATESGANFIAVRGPEL 534 >gi|115385577|ref|XP_001209335.1| cell division cycle protein 48 [Aspergillus terreus NIH2624] gi|114187782|gb|EAU29482.1| cell division cycle protein 48 [Aspergillus terreus NIH2624] Length = 821 Score = 42.1 bits (98), Expect = 0.073, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 65/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 255 PPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 314 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + + ++M A P S Sbjct: 315 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSID-- 372 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + V I +PD +++ + + + + + Sbjct: 373 -PALR-RFGRFDREVDIGIPDPTGRLEILQ--IHTKNMKLGEDV 412 >gi|314916066|gb|EFS79897.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL005PA4] Length = 717 Score = 42.1 bits (98), Expect = 0.074, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 51/165 (30%), Gaps = 47/165 (28%) Query: 67 VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110 V+L GP G+GK+ LA + ++ S + + Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAPAI 262 Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + D + L + ++ + +L+ A P L Sbjct: 263 IFIDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDVHGGVILIAATNRPDVLDPAL 322 Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVK 184 PDL RLK V P DD L + + Sbjct: 323 LRPGRFDRQIAVEAPDLDGRLKILKVHAHGKPMADDVDLASIARR 367 >gi|313765281|gb|EFS36645.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL013PA1] gi|313815350|gb|EFS53064.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL059PA1] gi|314917217|gb|EFS81048.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL050PA1] gi|314921717|gb|EFS85548.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL050PA3] gi|314931076|gb|EFS94907.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL067PA1] gi|314955055|gb|EFS99461.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL027PA1] gi|315099486|gb|EFT71462.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL059PA2] gi|327454532|gb|EGF01187.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL087PA3] gi|327456602|gb|EGF03257.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL083PA2] gi|328755586|gb|EGF69202.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL087PA1] gi|328756913|gb|EGF70529.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL025PA2] Length = 717 Score = 42.1 bits (98), Expect = 0.074, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 51/165 (30%), Gaps = 47/165 (28%) Query: 67 VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110 V+L GP G+GK+ LA + ++ S + + Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAPAI 262 Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + D + L + ++ + +L+ A P L Sbjct: 263 IFIDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDVHGGVILIAATNRPDVLDPAL 322 Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVK 184 PDL RLK V P DD L + + Sbjct: 323 LRPGRFDRQIAVEAPDLDGRLKILKVHAHGKPMADDVDLASIARR 367 >gi|303246049|ref|ZP_07332330.1| Adenosinetriphosphatase [Desulfovibrio fructosovorans JJ] gi|302492445|gb|EFL52316.1| Adenosinetriphosphatase [Desulfovibrio fructosovorans JJ] Length = 503 Score = 42.1 bits (98), Expect = 0.074, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 20/38 (52%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P R V+L GP G GK+ LA + +S + FS L Sbjct: 254 PPRGVLLYGPPGCGKTLLARAVAHESGARFFSVSGPEL 291 >gi|222054983|ref|YP_002537345.1| ATP-dependent metalloprotease FtsH [Geobacter sp. FRC-32] gi|221564272|gb|ACM20244.1| ATP-dependent metalloprotease FtsH [Geobacter sp. FRC-32] Length = 616 Score = 42.1 bits (98), Expect = 0.074, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 70/196 (35%), Gaps = 43/196 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI----------------DTRKP 110 ++LVGP G+GK+ LA + ++ FS A + + Sbjct: 210 ILLVGPPGTGKTLLARAVAGEAGVAFFSISASQFIEMFVGVGASRVRDLFSNAKKAAPSI 269 Query: 111 VLLEDIDLLDF----------ND-----TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 V ++++D + ++ QL ++ ++ +++ A P L Sbjct: 270 VFIDELDAVGRSRGAGFGGGHDEREQTLNQLLSEMDGFDPHEEVIVIAATNRPDVLDPAL 329 Query: 156 PDLCSRLKAA---TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 L+ V I PD E+++ R+I +D ++ I+ R + A Sbjct: 330 ------LRPGRFDRHVVIDRPDLRDREQILKVHA--RKIRLDPQVDLSIIARGTPGMTGA 381 Query: 213 EKLVDKMDNLALSRGM 228 L + ++ A+ Sbjct: 382 -DLENLINEAAIQAAR 396 >gi|195390229|ref|XP_002053771.1| GJ24070 [Drosophila virilis] gi|194151857|gb|EDW67291.1| GJ24070 [Drosophila virilis] Length = 444 Score = 42.1 bits (98), Expect = 0.074, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 222 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 273 >gi|158340534|ref|YP_001521528.1| transposase-associated ATP-binding protein, putative [Acaryochloris marina MBIC11017] gi|158310775|gb|ABW32389.1| transposase-associated ATP-binding protein, putative [Acaryochloris marina MBIC11017] Length = 251 Score = 42.1 bits (98), Expect = 0.074, Method: Composition-based stats. Identities = 26/160 (16%), Positives = 50/160 (31%), Gaps = 37/160 (23%) Query: 25 EEQLF-------FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGK 77 E QL F F ++ L+ W +++ GPSG+GK Sbjct: 58 EAQLPYGKSWTNFEFAHVPTLNPAALME-------FAQTTHWLE-SGSNILIFGPSGTGK 109 Query: 78 SCLANIWSDK------------------SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 + +++ + +D ++++D+ + Sbjct: 110 THVSSALGASIIELGKRVKFVTATTLVQQLQLAKLQLELQSLLSKLDRYDLLIIDDLGYV 169 Query: 120 DFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156 +D + LF +I + SLL+TA W P Sbjct: 170 QKSDVETSVLFELI-AHRYERKSLLITANQPFSQWDSIFP 208 >gi|119186983|ref|XP_001244098.1| hypothetical protein CIMG_03539 [Coccidioides immitis RS] gi|303317368|ref|XP_003068686.1| 26S protease regulatory subunit 6A, putative [Coccidioides posadasii C735 delta SOWgp] gi|240108367|gb|EER26541.1| 26S protease regulatory subunit 6A, putative [Coccidioides posadasii C735 delta SOWgp] gi|320038641|gb|EFW20576.1| 26S protease regulatory subunit 6A [Coccidioides posadasii str. Silveira] Length = 462 Score = 42.1 bits (98), Expect = 0.074, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 54/160 (33%), Gaps = 38/160 (23%) Query: 70 VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113 GP G+GK+ LA + ++ +T L + I ++ + Sbjct: 248 YGPPGTGKTLLARACAAQTDATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPAIIFI 307 Query: 114 EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158 +++D + + ++N D ++ A L L Sbjct: 308 DELDAVGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRIKVLAATNRVDVLDPAL--L 365 Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 S RL ++ LP+++ +++ R++ +D + Sbjct: 366 RSGRLD--RKIEFPLPNEEARAQIL--KIHSRKMTVDDGV 401 >gi|150388870|ref|YP_001318919.1| IstB ATP binding domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|150389280|ref|YP_001319329.1| IstB ATP binding domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|150389548|ref|YP_001319597.1| IstB ATP binding domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|150389882|ref|YP_001319931.1| IstB ATP binding domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|150390605|ref|YP_001320654.1| IstB ATP binding domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|150391292|ref|YP_001321341.1| IstB ATP binding domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|150391579|ref|YP_001321628.1| IstB ATP binding domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|150391667|ref|YP_001321716.1| IstB ATP binding domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|150391772|ref|YP_001321821.1| IstB ATP binding domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|150392363|ref|YP_001322412.1| IstB ATP binding domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|149948732|gb|ABR47260.1| IstB domain protein ATP-binding protein [Alkaliphilus metalliredigens QYMF] gi|149949142|gb|ABR47670.1| IstB domain protein ATP-binding protein [Alkaliphilus metalliredigens QYMF] gi|149949410|gb|ABR47938.1| IstB domain protein ATP-binding protein [Alkaliphilus metalliredigens QYMF] gi|149949744|gb|ABR48272.1| IstB domain protein ATP-binding protein [Alkaliphilus metalliredigens QYMF] gi|149950467|gb|ABR48995.1| IstB domain protein ATP-binding protein [Alkaliphilus metalliredigens QYMF] gi|149951154|gb|ABR49682.1| IstB domain protein ATP-binding protein [Alkaliphilus metalliredigens QYMF] gi|149951441|gb|ABR49969.1| IstB domain protein ATP-binding protein [Alkaliphilus metalliredigens QYMF] gi|149951529|gb|ABR50057.1| IstB domain protein ATP-binding protein [Alkaliphilus metalliredigens QYMF] gi|149951634|gb|ABR50162.1| IstB domain protein ATP-binding protein [Alkaliphilus metalliredigens QYMF] gi|149952225|gb|ABR50753.1| IstB domain protein ATP-binding protein [Alkaliphilus metalliredigens QYMF] Length = 247 Score = 42.1 bits (98), Expect = 0.074, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 52/120 (43%), Gaps = 24/120 (20%) Query: 61 SWPSRV--VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL-------------- 104 W R+ +IL+GP G GKS L K+ + ++D+++ Sbjct: 95 DWIDRMYNLILLGPPGVGKSHLCIALGYKAVEMGYKVSFTTMDNLMHCLKTQEISRKSKG 154 Query: 105 ----IDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 + + ++++++ L + + F +I+++H+ +SL++T+ W L D Sbjct: 155 KINNVLSSSLLIIDELGYLPISREEANLFFQLISALHE-QTSLIITSNKGLEDWTELLGD 213 >gi|325119019|emb|CBZ54571.1| putative ATPase, AAA family domain-containing protein [Neospora caninum Liverpool] Length = 1165 Score = 42.1 bits (98), Expect = 0.074, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 17/25 (68%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDK 87 P + V+L GP GSGK+ LA +++ Sbjct: 458 PPKGVLLYGPPGSGKTHLARAVAEE 482 >gi|303244216|ref|ZP_07330553.1| 26S proteasome subunit P45 family [Methanothermococcus okinawensis IH1] gi|302485343|gb|EFL48270.1| 26S proteasome subunit P45 family [Methanothermococcus okinawensis IH1] Length = 408 Score = 42.1 bits (98), Expect = 0.074, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + ++ ++ + L I ++ + Sbjct: 182 PPKGVLLYGPPGTGKTLLAKAVAHETNASFIKIVGSELVKKFIGEGAKLVKD 233 >gi|301770835|ref|XP_002920836.1| PREDICTED: 26S protease regulatory subunit 4-like [Ailuropoda melanoleuca] Length = 454 Score = 42.1 bits (98), Expect = 0.074, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 232 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 283 >gi|195494266|ref|XP_002094763.1| GE22001 [Drosophila yakuba] gi|194180864|gb|EDW94475.1| GE22001 [Drosophila yakuba] Length = 1006 Score = 42.1 bits (98), Expect = 0.074, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 28/110 (25%) Query: 47 SAIEQAVRLIDSWPSWPSRV--------------VILVGPSGSGKSCLANIWSDKSRSTR 92 +E V +++ WPSR V+L GP G+GK+ L Sbjct: 723 PGLESVVGVLEEVLMWPSRYPTIFNASPLRNQAGVLLYGPPGTGKTYL------------ 770 Query: 93 FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLM 142 S +A S + +I + P LL + ++ + ++ N +L Sbjct: 771 VSQLATSWNLRIISVKGPELL--AKYIGQSEENVRNLFNRARSARPCVLF 818 >gi|167586457|ref|ZP_02378845.1| recombination factor protein RarA [Burkholderia ubonensis Bu] Length = 436 Score = 42.1 bits (98), Expect = 0.074, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 58/170 (34%), Gaps = 22/170 (12%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA + + + A I + ++ + T L Sbjct: 50 MILWGPPGVGKTTLARLTALAFDCEFIALSAVLGGVKDIREAMEQAKDTLNRTGRH-TIL 108 Query: 127 F----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N + + A T S+ V L SR A V + Sbjct: 109 FVDEIHRFNKGQQDALLPFVESGLVTFIGATTENPSFEVNSA-LLSR---AQVYVLKSLT 164 Query: 175 DDFLEKVIVKM--FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 DD + +++ + A + D K +V + A + ++ ++ Sbjct: 165 DDEMRQLLKRAQEIALEGLAFDDKAVDTLVGYAD---GDARRFLNLLEQA 211 >gi|126667375|ref|ZP_01738347.1| hypothetical protein MELB17_13951 [Marinobacter sp. ELB17] gi|126628131|gb|EAZ98756.1| hypothetical protein MELB17_13951 [Marinobacter sp. ELB17] Length = 445 Score = 42.1 bits (98), Expect = 0.074, Method: Composition-based stats. Identities = 30/174 (17%), Positives = 66/174 (37%), Gaps = 25/174 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ A + ++ S F N++ L + DT L Sbjct: 52 MILWGPPGVGKTTFAQLLANVSD-LAFENVSAVLSGVKDIRAAVERARARKQGSGQDTLL 110 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N + + + + A T S+ + L SR + V + + Sbjct: 111 FVDEVHRFNKSQQDAFLPHIEDGTFIFVGATTENPSFELNSA-LLSRTR---VYVLKNLE 166 Query: 175 DDFLEKVIVKMFADR-----QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 DD +++++++ + ++ + + + A + A + ++ ++ A Sbjct: 167 DDDIQRLLIRALSAEEGFGGRLRVAEDVLAMMASAAS---GDARRALNILEVAA 217 >gi|308805464|ref|XP_003080044.1| PRS6A_LYCES 26S protease regulatory subunit 6A homolog (ISS) [Ostreococcus tauri] gi|116058503|emb|CAL53692.1| PRS6A_LYCES 26S protease regulatory subunit 6A homolog (ISS) [Ostreococcus tauri] Length = 425 Score = 42.1 bits (98), Expect = 0.074, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ +A + ++ + L + I ++ + Sbjct: 205 PPKGVLLYGPPGTGKTLIARACAAQTNAAYLKLAGPLLVQMFIGDGAKLVRD 256 >gi|91086399|ref|XP_974859.1| PREDICTED: similar to 26S protease regulatory subunit 4 [Tribolium castaneum] gi|270010293|gb|EFA06741.1| hypothetical protein TcasGA2_TC009675 [Tribolium castaneum] Length = 438 Score = 42.1 bits (98), Expect = 0.074, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 216 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 267 >gi|158291405|ref|XP_312923.4| AGAP003215-PA [Anopheles gambiae str. PEST] gi|158291407|ref|XP_312924.4| AGAP003216-PA [Anopheles gambiae str. PEST] gi|157017759|gb|EAA08386.4| AGAP003215-PA [Anopheles gambiae str. PEST] gi|157017760|gb|EAA08387.4| AGAP003216-PA [Anopheles gambiae str. PEST] Length = 438 Score = 42.1 bits (98), Expect = 0.074, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 216 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 267 >gi|301787485|ref|XP_002929160.1| PREDICTED: LOW QUALITY PROTEIN: spastin-like [Ailuropoda melanoleuca] Length = 645 Score = 42.1 bits (98), Expect = 0.075, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 30/50 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S +T F+ A SL S + + ++ Sbjct: 403 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 452 >gi|255956331|ref|XP_002568918.1| Pc21g19270 [Penicillium chrysogenum Wisconsin 54-1255] gi|211590629|emb|CAP96824.1| Pc21g19270 [Penicillium chrysogenum Wisconsin 54-1255] Length = 820 Score = 42.1 bits (98), Expect = 0.075, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 49/121 (40%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 255 PPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 314 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + + ++M A P S Sbjct: 315 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSIDPA 374 Query: 155 L 155 L Sbjct: 375 L 375 >gi|193617698|ref|XP_001948523.1| PREDICTED: 26S protease regulatory subunit 4-like [Acyrthosiphon pisum] Length = 440 Score = 42.1 bits (98), Expect = 0.075, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 218 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 269 >gi|154296359|ref|XP_001548611.1| hypothetical protein BC1G_13006 [Botryotinia fuckeliana B05.10] gi|150843464|gb|EDN18657.1| hypothetical protein BC1G_13006 [Botryotinia fuckeliana B05.10] Length = 960 Score = 42.1 bits (98), Expect = 0.075, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 22/45 (48%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109 ++L GP G+GK+ LA + +S +T ++ + + + Sbjct: 684 PGLLLYGPPGTGKTLLAKAVAKESGATVLEISGAEVNDMYVGEGE 728 >gi|148700412|gb|EDL32359.1| Werner helicase interacting protein 1, isoform CRA_b [Mus musculus] Length = 590 Score = 42.1 bits (98), Expect = 0.075, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 16/83 (19%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA+I ++ S+ + S + + + D+ N+ Sbjct: 279 PSLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 333 Query: 125 QLF-----------HIINSIHQY 136 F H N Q Sbjct: 334 SFFKRKTILFIDEIHRFNKSQQD 356 >gi|27383310|ref|NP_774839.1| transposase [Bradyrhizobium japonicum USDA 110] gi|27356485|dbj|BAC53464.1| bll8199 [Bradyrhizobium japonicum USDA 110] Length = 287 Score = 42.1 bits (98), Expect = 0.075, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 48/110 (43%), Gaps = 22/110 (20%) Query: 64 SRVVILVGPSGSGKSCLANIWS-------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 R V+LVG +G+GK+ LA + + R ++ L++ + R+ L E + Sbjct: 98 QRNVVLVGGTGTGKTHLAIAIARSCIRSGARGRFFNVVDLVNRLETETRNGRQGRLAEHL 157 Query: 117 ---DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 D + ++ LFH+++ +++ +S+++T W Sbjct: 158 TRMDFIVLDELGYLPFAQSGGQLLFHLVSRLYER-ASVIVTTNLAFGEWP 206 >gi|66806375|ref|XP_636910.1| cell division cycle protein 48 [Dictyostelium discoideum AX4] gi|4996891|gb|AAB40928.2| cell division cycle protein 48 [Dictyostelium discoideum] gi|60465285|gb|EAL63377.1| cell division cycle protein 48 [Dictyostelium discoideum AX4] Length = 793 Score = 42.1 bits (98), Expect = 0.075, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 46/121 (38%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP G GK+ +A ++++ + F SN+ K+ + + Sbjct: 235 PPKGILLYGPPGCGKTMIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 294 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + ++M A P S Sbjct: 295 APSIIFIDEIDSIAPKREKTQGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPA 354 Query: 155 L 155 L Sbjct: 355 L 355 Score = 39.0 bits (90), Expect = 0.55, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 508 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRELFDKA 564 >gi|313821991|gb|EFS59705.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL036PA1] gi|313824113|gb|EFS61827.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL036PA2] gi|313826480|gb|EFS64194.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL063PA1] gi|314926566|gb|EFS90397.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL036PA3] gi|314961368|gb|EFT05469.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL002PA2] gi|314980289|gb|EFT24383.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL072PA2] gi|314987373|gb|EFT31464.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL005PA2] gi|314989086|gb|EFT33177.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL005PA3] gi|315086079|gb|EFT58055.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL002PA3] gi|315087665|gb|EFT59641.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL072PA1] gi|327333318|gb|EGE75038.1| putative cell division protein [Propionibacterium acnes HL096PA3] gi|327445204|gb|EGE91858.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL013PA2] gi|332674668|gb|AEE71484.1| cell division protease FtsH [Propionibacterium acnes 266] Length = 717 Score = 42.1 bits (98), Expect = 0.075, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 51/165 (30%), Gaps = 47/165 (28%) Query: 67 VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110 V+L GP G+GK+ LA + ++ S + + Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAPAI 262 Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + D + L + ++ + +L+ A P L Sbjct: 263 IFIDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDVHGGVILIAATNRPDVLDPAL 322 Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVK 184 PDL RLK V P DD L + + Sbjct: 323 LRPGRFDRQIAVEAPDLDGRLKILKVHAHGKPMADDVDLASIARR 367 >gi|306845140|ref|ZP_07477720.1| transposase [Brucella sp. BO1] gi|306274555|gb|EFM56350.1| transposase [Brucella sp. BO1] Length = 244 Score = 42.1 bits (98), Expect = 0.075, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 55/125 (44%), Gaps = 24/125 (19%) Query: 67 VILVGPSGSGKSCLANIWS-------DKSRSTRFSNIAKSLDSILIDTRKPVLLE---DI 116 ++LVG +G+GKS L+ ++ + R ++ L++ + ++ L + + Sbjct: 101 IVLVGGTGTGKSHLSIAFARALIRNGARGRFYNVVDLVNRLETEARNGKQGRLADFITRL 160 Query: 117 DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 D + ++ LFH+I+ +++ +S+++T W D + AA Sbjct: 161 DFVIMDELGYLPFAQAGGQLLFHLISRLYER-TSIIVTTNLTFGEWPTVFGDAK--MTAA 217 Query: 166 TVVKI 170 + ++ Sbjct: 218 LLDRL 222 >gi|303232661|ref|ZP_07319346.1| recombination factor protein RarA [Atopobium vaginae PB189-T1-4] gi|302481147|gb|EFL44222.1| recombination factor protein RarA [Atopobium vaginae PB189-T1-4] Length = 471 Score = 42.1 bits (98), Expect = 0.075, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 22/140 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL------DSILIDTRKPVLLEDIDLLD 120 +IL GPSG+GK+ LA+I + + + + A S D+I + + +L Sbjct: 67 IILYGPSGTGKTTLAHIIARYTHAHVVTMSAISATVKDVRDTISTASSRLYTRRQRTILF 126 Query: 121 FNDTQLFHIINSIHQY--------DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 ++ H N Q + +L+ A T + V L SR + +++++ Sbjct: 127 LDEI---HRFNRSQQDALLEAVEMRTIILIGATTENPYFEVNSA-LISR---SRIIELTS 179 Query: 173 PDDDFLEKVIVKMFAD-RQI 191 DD + KVI + D R + Sbjct: 180 LSDDDIAKVINRALTDERGL 199 >gi|302389033|ref|YP_003824854.1| AAA family ATPase, CDC48 subfamily [Thermosediminibacter oceani DSM 16646] gi|302199661|gb|ADL07231.1| AAA family ATPase, CDC48 subfamily [Thermosediminibacter oceani DSM 16646] Length = 733 Score = 42.1 bits (98), Expect = 0.075, Method: Composition-based stats. Identities = 23/166 (13%), Positives = 60/166 (36%), Gaps = 34/166 (20%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILIDTRKP 110 ++L GP G+GK+ +A + ++ + + + + D Sbjct: 243 ILLYGPPGTGKTLIARAIASETEAHFLLVNGPEIMHKYYGESEARLRQVFDEAKKKAPSI 302 Query: 111 VLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158 + L++ID + T QL +++ + + +++ A P + P L Sbjct: 303 IFLDEIDAIAPRRTEVYGDVEKRVVAQLLALMDGLEARGNVIVLAATNVP---DLIDPAL 359 Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQ 203 + + I +PD ++++ R + + + + Y+ Sbjct: 360 RRPGRFDREILIDVPDQRGRKEIL--AIHTRGMALAEDVSLEYLAA 403 >gi|307727977|ref|YP_003911190.1| IstB domain-containing protein ATP-binding protein [Burkholderia sp. CCGE1003] gi|307588502|gb|ADN61899.1| IstB domain protein ATP-binding protein [Burkholderia sp. CCGE1003] Length = 250 Score = 42.1 bits (98), Expect = 0.075, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 56/154 (36%), Gaps = 34/154 (22%) Query: 32 FPRCLGISRDDLLVHSAIEQAVR------LIDSWPSWPSRVVILVGPSGSGKSCLANIW- 84 FP I D A E VR IDS + ++LVG G+GK+ LA Sbjct: 57 FPAYRDIGGFDFSCSDANEALVRQLYECEFIDS-----AHNIVLVGGPGTGKTHLATAIG 111 Query: 85 -SDKSRSTRFSNIAKSLDSILIDTRKPVL---------LEDIDLLDFND----------- 123 R +++ + ++ ++ L DL+ ++ Sbjct: 112 VQALEHHRRRVRFFSTIELVNALEQEKLVGKPGQLATRLMYADLVVLDELGYLPFSQTGG 171 Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 LFH+++ +++ +S+++T W D Sbjct: 172 ALLFHLLSKLYER-TSIIITTNLSFAEWASVFDD 204 >gi|259483400|tpe|CBF78760.1| TPA: Cell division control protein 48 [Source:UniProtKB/Swiss-Prot;Acc:Q5AWS6] [Aspergillus nidulans FGSC A4] Length = 814 Score = 42.1 bits (98), Expect = 0.075, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 49/121 (40%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 249 PPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 308 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + + ++M A P S Sbjct: 309 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSIDPA 368 Query: 155 L 155 L Sbjct: 369 L 369 >gi|323339472|ref|ZP_08079751.1| AAA family ATPase [Lactobacillus ruminis ATCC 25644] gi|323093086|gb|EFZ35679.1| AAA family ATPase [Lactobacillus ruminis ATCC 25644] Length = 424 Score = 42.1 bits (98), Expect = 0.075, Method: Composition-based stats. Identities = 28/167 (16%), Positives = 67/167 (40%), Gaps = 23/167 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSR-STRFSNIA----KSLDSILIDTRKP----VLLEDID 117 +IL GP G+GK+ +A+ + ++ + R N A K L+ + ++ + ++L++I Sbjct: 41 MILYGPPGTGKTSIASAIAGSTKYAFRILNAATDSKKELEQVALEAKMSGTVILMLDEIH 100 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 L + + +L+ A T + P + SR + ++ ++ Sbjct: 101 RLTKPKQDFLLPM---LESGKIILIGATTENPYISIN-PAIRSR---TQIFEVQKLSEED 153 Query: 178 LEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVD 217 ++ I + D R + +D ++ + L A ++ Sbjct: 154 IKTAINRALQDDERGLGKYHVVLDDDAMIHLARATNGDLRSALNGLE 200 >gi|184185457|gb|ACC68862.1| proteasome 26S ATPase subunit 1 (predicted) [Rhinolophus ferrumequinum] Length = 356 Score = 42.1 bits (98), Expect = 0.075, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 134 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 185 >gi|163754796|ref|ZP_02161918.1| cell division cycle protein 48-related protein [Kordia algicida OT-1] gi|161325737|gb|EDP97064.1| cell division cycle protein 48-related protein [Kordia algicida OT-1] Length = 430 Score = 42.1 bits (98), Expect = 0.075, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 64/193 (33%), Gaps = 43/193 (22%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILIDTRKP 110 ++L GP G GK+ +A + + + + N+ + + + Sbjct: 189 ILLYGPPGCGKTHIARATAGEINANFINIGINDILDMWIGNSEKNLHEIFEVARANKPCV 248 Query: 111 VLLEDIDLLDFNDTQL-----FHIINSIH--------QYDSSLLMTARTFPVSWG--VCL 155 V +++ID L N + +IN D L++ A P Sbjct: 249 VFIDEIDALGANRNDVNKTSGRSVINQFLAELDGIDADNDGILVLGATNAPWHLDPAFRR 308 Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI-VQRMERSLVFAEK 214 P R ++ +S PD + + ++ + Y+ + + + A Sbjct: 309 P---GRFD--RIIFVSPPDVEAKAAIFNIHLKEK----PTETIDYMALAKAAKEFSGA-D 358 Query: 215 LVDKMDNLALSRG 227 + +D +A+ R Sbjct: 359 IQAAID-VAIERK 370 >gi|146161282|ref|XP_977097.2| ATPase, AAA family protein [Tetrahymena thermophila] gi|146146796|gb|EAR86317.2| ATPase, AAA family protein [Tetrahymena thermophila SB210] Length = 440 Score = 42.1 bits (98), Expect = 0.075, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 27/50 (54%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P + ++L GP G+GK+ LA + ++ T FS + L S + + ++ Sbjct: 172 PWKGILLYGPPGTGKTYLAKACATETEGTFFSVSSADLVSKYVGESEKLI 221 >gi|114778010|ref|ZP_01452910.1| ATPase [Mariprofundus ferrooxydans PV-1] gi|114551616|gb|EAU54169.1| ATPase [Mariprofundus ferrooxydans PV-1] Length = 448 Score = 42.1 bits (98), Expect = 0.075, Method: Composition-based stats. Identities = 28/170 (16%), Positives = 57/170 (33%), Gaps = 28/170 (16%) Query: 68 ILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125 I GP G GK+ LA + +D + + S ++ + ++ LL ++ Sbjct: 60 IFWGPPGVGKTTLATVMADAAGIPFVQLSAVSAGKAEVQDVVKRARSAGQTWLLFLDEI- 118 Query: 126 LFHIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 H N Q D +L++ T S L SR + + + D Sbjct: 119 --HRFNKAQQDVLLPCIEDGTLVLVGATTENPSFSLNNA---LLSRCRVIVLQALQASD- 172 Query: 176 DFLEKVIVKMF------ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 VI+K + +D ++ + + +A ++ + Sbjct: 173 ---VAVILKRACRYLGDQAKAFSLDDDALVWLAENSDGDARYALNALESL 219 >gi|58261852|ref|XP_568336.1| endopeptidase [Cryptococcus neoformans var. neoformans JEC21] gi|134118417|ref|XP_772095.1| hypothetical protein CNBM1410 [Cryptococcus neoformans var. neoformans B-3501A] gi|50254702|gb|EAL17448.1| hypothetical protein CNBM1410 [Cryptococcus neoformans var. neoformans B-3501A] gi|57230509|gb|AAW46819.1| endopeptidase, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 464 Score = 42.1 bits (98), Expect = 0.075, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P + ++ GP G+GK+ LA + ++ + +L + + ++ + +L Sbjct: 245 PPKGCLMYGPPGTGKTLLARACAAQTNACYLKLAGPALVQMYLGDGAKLVRDAFELA 301 >gi|315102008|gb|EFT73984.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL046PA1] Length = 717 Score = 42.1 bits (98), Expect = 0.076, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 51/165 (30%), Gaps = 47/165 (28%) Query: 67 VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110 V+L GP G+GK+ LA + ++ S + + Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAPAI 262 Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + D + L + ++ + +L+ A P L Sbjct: 263 IFIDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDVHGGVILIAATNRPDVLDPAL 322 Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVK 184 PDL RLK V P DD L + + Sbjct: 323 LRPGRFDRQIAVEAPDLDGRLKILKVHAHGKPMADDVDLASIARR 367 >gi|289428980|ref|ZP_06430660.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes J165] gi|289157981|gb|EFD06204.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes J165] gi|328758404|gb|EGF72020.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL020PA1] Length = 717 Score = 42.1 bits (98), Expect = 0.076, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 51/165 (30%), Gaps = 47/165 (28%) Query: 67 VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110 V+L GP G+GK+ LA + ++ S + + Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAPAI 262 Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + D + L + ++ + +L+ A P L Sbjct: 263 IFIDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDVHGGVILIAATNRPDVLDPAL 322 Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVK 184 PDL RLK V P DD L + + Sbjct: 323 LRPGRFDRQIAVEAPDLDGRLKILKVHAHGKPMADDVDLASIARR 367 >gi|295129829|ref|YP_003580492.1| Cell division protein FtsH [Propionibacterium acnes SK137] gi|310946756|sp|D4HA34|FTSH_PROAS RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|291376079|gb|ADD99933.1| Cell division protein FtsH [Propionibacterium acnes SK137] Length = 717 Score = 42.1 bits (98), Expect = 0.076, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 51/165 (30%), Gaps = 47/165 (28%) Query: 67 VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110 V+L GP G+GK+ LA + ++ S + + Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAPAI 262 Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + D + L + ++ + +L+ A P L Sbjct: 263 IFIDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDVHGGVILIAATNRPDVLDPAL 322 Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVK 184 PDL RLK V P DD L + + Sbjct: 323 LRPGRFDRQIAVEAPDLDGRLKILKVHAHGKPMADDVDLASIARR 367 >gi|218440251|ref|YP_002378580.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7424] gi|218172979|gb|ACK71712.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7424] Length = 628 Score = 42.1 bits (98), Expect = 0.076, Method: Composition-based stats. Identities = 33/214 (15%), Positives = 69/214 (32%), Gaps = 45/214 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ FS + + Sbjct: 209 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCL 268 Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + ND QL ++ +++ A P L Sbjct: 269 IFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEGNTGIIIIAATNRPDVLDSAL 328 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 ++ V + PD ++ ++++ + + I +R A Sbjct: 329 ------MRPGRFDRQVIVDAPDVKGRLAILEVHARNKKLA-PEVVLDAIARRTP-GFSGA 380 Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 L + ++ A+ R A +L+ D Sbjct: 381 -DLANLLNEAAILTARR--RKEAITMLEIDDAID 411 >gi|50841750|ref|YP_054977.1| putative cell division protein FtsH [Propionibacterium acnes KPA171202] gi|289424180|ref|ZP_06425963.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes SK187] gi|50839352|gb|AAT82019.1| putative cell division protein FtsH [Propionibacterium acnes KPA171202] gi|289154877|gb|EFD03559.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes SK187] gi|313802737|gb|EFS43955.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL110PA2] gi|313814558|gb|EFS52272.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL025PA1] gi|313828789|gb|EFS66503.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL063PA2] gi|313831709|gb|EFS69423.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL007PA1] gi|313834409|gb|EFS72123.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL056PA1] gi|313840400|gb|EFS78114.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL086PA1] gi|314969686|gb|EFT13784.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL037PA1] gi|314974751|gb|EFT18846.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL053PA1] gi|314977052|gb|EFT21147.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL045PA1] gi|314985463|gb|EFT29555.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL005PA1] gi|315082135|gb|EFT54111.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL078PA1] gi|315097298|gb|EFT69274.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL038PA1] gi|315106292|gb|EFT78268.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL030PA1] gi|315110070|gb|EFT82046.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL030PA2] gi|327331332|gb|EGE73071.1| cell division protein FtsH [Propionibacterium acnes HL096PA2] gi|327447287|gb|EGE93941.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL043PA1] gi|327450266|gb|EGE96920.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL043PA2] gi|328761145|gb|EGF74689.1| cell division protein FtsH [Propionibacterium acnes HL099PA1] Length = 717 Score = 42.1 bits (98), Expect = 0.076, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 51/165 (30%), Gaps = 47/165 (28%) Query: 67 VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110 V+L GP G+GK+ LA + ++ S + + Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAPAI 262 Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + D + L + ++ + +L+ A P L Sbjct: 263 IFIDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDVHGGVILIAATNRPDVLDPAL 322 Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVK 184 PDL RLK V P DD L + + Sbjct: 323 LRPGRFDRQIAVEAPDLDGRLKILKVHAHGKPMADDVDLASIARR 367 >gi|312384064|gb|EFR28883.1| hypothetical protein AND_02632 [Anopheles darlingi] gi|312384065|gb|EFR28884.1| hypothetical protein AND_02633 [Anopheles darlingi] Length = 438 Score = 42.1 bits (98), Expect = 0.077, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 216 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 267 >gi|237800567|ref|ZP_04589028.1| recombination factor protein RarA [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023427|gb|EGI03484.1| recombination factor protein RarA [Pseudomonas syringae pv. oryzae str. 1_6] Length = 440 Score = 42.1 bits (98), Expect = 0.077, Method: Composition-based stats. Identities = 37/210 (17%), Positives = 73/210 (34%), Gaps = 32/210 (15%) Query: 57 DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 ++ +I GP G GK+ LA + + S + + A I V + Sbjct: 40 EALEQGALHSMIFWGPPGVGKTTLARLLAKVSDAHFETVSAVLAGVKEIRQAVEVARQQA 99 Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162 T LF H N Q D +L+ T L SR Sbjct: 100 GQYGKR-TILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154 Query: 163 KAATVVKISLPDDDFLEKVI------VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216 A V + D+ L K++ + R++ + + A ++ + +++ Sbjct: 155 --ARVYVLKSLDEAALRKLVNRALTEERGLGRRRLTLSDEGFAILMSAAD---GDGRRML 209 Query: 217 DKMDNLA-LSR-GMGITRSLAAEVLKETQQ 244 + ++N + L+ G I L +L ++++ Sbjct: 210 NLLENASDLAEDGSEIDIELLQSLLGDSRR 239 >gi|297563373|ref|YP_003682347.1| IstB domain protein ATP-binding protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847821|gb|ADH69841.1| IstB domain protein ATP-binding protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 230 Score = 42.1 bits (98), Expect = 0.077, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 47/130 (36%), Gaps = 26/130 (20%) Query: 64 SRVVILVGPSGSGKSC-------------------LANIWSDKSRSTRFSNIAKSLDSIL 104 + ++L G +G+GK+ LA + D + R L Sbjct: 88 APSLMLWGGTGTGKTHAAFGAVRRIALTGPIRFGFLATTFPDLYAALRPGAGNDEERERL 147 Query: 105 ---IDTRKPVLLEDIDLLD---FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD- 157 + + +LL+D+ + + + I+N + +++T+ P + L D Sbjct: 148 MRRVLSVPVLLLDDLGTTKSSLWTEETTYRIVNHRYNRMLPVVITSNEPPAALPELLGDR 207 Query: 158 LCSRLKAATV 167 + SRL T Sbjct: 208 IASRLIEMTT 217 >gi|227552635|ref|ZP_03982684.1| crossover junction endodeoxyribonuclease [Enterococcus faecium TX1330] gi|227178261|gb|EEI59233.1| crossover junction endodeoxyribonuclease [Enterococcus faecium TX1330] Length = 459 Score = 42.1 bits (98), Expect = 0.077, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 67/176 (38%), Gaps = 32/176 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117 +IL GP G+GK+ +A+ + + + R N A + + +LL+++ Sbjct: 73 MILYGPPGTGKTSIASAIAGSTNYAFRMLNAATDSKKELQVVAEEAKMSGTVILLLDEVH 132 Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 LD D L H+ + +L+ A T + P + SR + ++ + Sbjct: 133 RLDKTKQDFLLPHL-----ESGRIILIGATTENPYITIN-PAIRSR---TQIFEVKPLTE 183 Query: 176 DFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLV-FAEKLVDKMDNLA 223 ++ + D R + +D++ + + R+ ++ ++ A Sbjct: 184 QDIQLAVKHALKDKERGLGQQAIQLDEEA----LLHLSRATNGDLRSALNGLELAA 235 >gi|195145006|ref|XP_002013487.1| GL24166 [Drosophila persimilis] gi|194102430|gb|EDW24473.1| GL24166 [Drosophila persimilis] Length = 417 Score = 42.1 bits (98), Expect = 0.077, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 195 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 246 >gi|146319649|ref|YP_001199361.1| multidrug ABC transporter ATP-binding protein [Streptococcus suis 05ZYH33] gi|146321847|ref|YP_001201558.1| multidrug ABC transporter ATP-binding protein [Streptococcus suis 98HAH33] gi|253752647|ref|YP_003025788.1| ABC transporter ATP-binding protein [Streptococcus suis SC84] gi|253754473|ref|YP_003027614.1| ABC transporter ATP-binding protein [Streptococcus suis P1/7] gi|253756406|ref|YP_003029546.1| ABC transporter ATP-binding protein [Streptococcus suis BM407] gi|145690455|gb|ABP90961.1| multidrug ABC transporter, ATP-binding protein [Streptococcus suis 05ZYH33] gi|145692653|gb|ABP93158.1| multidrug ABC transporter, ATP-binding protein [Streptococcus suis 98HAH33] gi|251816936|emb|CAZ52585.1| ABC transporter ATP-binding membrane protein [Streptococcus suis SC84] gi|251818870|emb|CAZ56713.1| ABC transporter ATP-binding membrane protein [Streptococcus suis BM407] gi|251820719|emb|CAR47481.1| ABC transporter ATP-binding membrane protein [Streptococcus suis P1/7] gi|292559266|gb|ADE32267.1| ATP-binding protein: Amino acid transport [Streptococcus suis GZ1] gi|319759063|gb|ADV71005.1| multidrug ABC transporter, ATP-binding protein [Streptococcus suis JS14] Length = 525 Score = 42.1 bits (98), Expect = 0.077, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 61/158 (38%), Gaps = 24/158 (15%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123 + +++G SGSGKS LA I +++++ +D I + ++D + Sbjct: 342 GKKYLILGESGSGKSSLALI---LTKNSQLQAGDIYVDQISLSDLSYQAIQDKIAYLPQE 398 Query: 124 TQLFH---IINSIHQYDSSLLMTARTFPV---SWGVCLPDLCSRLKAATVVKISLPDDDF 177 LFH + N R P + + +L SR + + + DD Sbjct: 399 GSLFHDTVLYNLTM---------GREVPEDRLMFHIKTVNLDSRFPSYASLSEEISDDSG 449 Query: 178 LEKVI-VKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 L ++ R + DK + ++ ++ SL ++ Sbjct: 450 LSGGQKQRLLLIRALLQDKDI---LL--LDESLSALDQ 482 >gi|109018123|ref|XP_001096627.1| PREDICTED: nuclear VCP-like isoform 4 [Macaca mulatta] Length = 856 Score = 42.1 bits (98), Expect = 0.077, Method: Composition-based stats. Identities = 26/168 (15%), Positives = 58/168 (34%), Gaps = 42/168 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P R V+L GP G GK+ LA+ + + A + + + + Sbjct: 297 PPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFEQAVSN 356 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151 + +++ID + QL + N++ L++ A P S Sbjct: 357 APCIIFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSL 416 Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKK 196 L +A + + +P + E+++ + R++ + + Sbjct: 417 DPALR------RAGRFDREICLGIPGEASRERILQTLC--RKLRLPQA 456 Score = 38.6 bits (89), Expect = 0.71, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 51/164 (31%), Gaps = 37/164 (22%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109 P+ V+ L GP G GK+ LA +++S S L ++ + + Sbjct: 615 PAGVL-LAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNS 673 Query: 110 -PVLL--EDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWG-- 152 P ++ +++D L QL ++ + +M A P Sbjct: 674 APCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPA 733 Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196 + P RL V + P D I+K Sbjct: 734 ILRP---GRLDKTLFVGLPPPTDRL---AILKTITKNGTKPPLD 771 >gi|5531245|emb|CAB51031.1| l(3)70Da [Drosophila melanogaster] Length = 1006 Score = 42.1 bits (98), Expect = 0.077, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 28/110 (25%) Query: 47 SAIEQAVRLIDSWPSWPSRV--------------VILVGPSGSGKSCLANIWSDKSRSTR 92 +E V +++ WPSR V+L GP G+GK+ L Sbjct: 723 PGLESVVGVLEEVLMWPSRYPTIFNASPLRNQAGVLLYGPPGTGKTYL------------ 770 Query: 93 FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLM 142 S +A S + +I + P LL + ++ + ++ N +L Sbjct: 771 VSQLATSWNLRIISVKGPELL--AKYIGQSEENVRNLFNRARSARPCVLF 818 >gi|332375398|gb|AEE62840.1| unknown [Dendroctonus ponderosae] Length = 438 Score = 42.1 bits (98), Expect = 0.077, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 216 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 267 >gi|323331380|gb|EGA72798.1| Vps4p [Saccharomyces cerevisiae AWRI796] Length = 437 Score = 42.1 bits (98), Expect = 0.077, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 53/140 (37%), Gaps = 41/140 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P+ ++L GP G+GKS LA + ++ ST FS + L S + + ++ Sbjct: 165 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMAREN 224 Query: 113 ------LEDIDLLDFND------------TQLFHIINSI-HQYDSSLLMTARTFPVSWG- 152 ++++D L T+L +N + + L++ A P Sbjct: 225 KPSIIFIDEVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDS 284 Query: 153 -----------VCLPDLCSR 161 + LPDL +R Sbjct: 285 AIRRRFERRIYIPLPDLAAR 304 >gi|299536710|ref|ZP_07050020.1| cell division protease ftsH-like protein [Lysinibacillus fusiformis ZC1] gi|298727824|gb|EFI68389.1| cell division protease ftsH-like protein [Lysinibacillus fusiformis ZC1] Length = 675 Score = 42.1 bits (98), Expect = 0.077, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 70/205 (34%), Gaps = 45/205 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 ++LVGP G+GK+ LA + ++ FS + + Sbjct: 201 ILLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260 Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + + L + ++ + +++ A P L Sbjct: 261 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANEGIIIIAATNRPDILDKAL 320 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 L+ + + PD E ++ ++ + LAA + QR A Sbjct: 321 ------LRPGRFDRQITVGHPDVKGREAILKVHARNKPLADTVDLAA-VAQRTP-GFSGA 372 Query: 213 EKLVDKMDNLAL--SRGMGITRSLA 235 L + ++ AL +R T ++A Sbjct: 373 -DLENLLNEAALVAARKSKRTINMA 396 >gi|289740351|gb|ADD18923.1| 26S proteasome regulatory complex ATPase RPT2 [Glossina morsitans morsitans] Length = 439 Score = 42.1 bits (98), Expect = 0.077, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 217 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 268 >gi|260773038|ref|ZP_05881954.1| ATPase AAA family [Vibrio metschnikovii CIP 69.14] gi|260612177|gb|EEX37380.1| ATPase AAA family [Vibrio metschnikovii CIP 69.14] Length = 449 Score = 42.1 bits (98), Expect = 0.077, Method: Composition-based stats. Identities = 40/196 (20%), Positives = 80/196 (40%), Gaps = 32/196 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS-------------TRFSNIAKSLDSILIDTRKPVLL 113 +IL GP G+GK+ LA + ++ + + + I ++ ++ + R + + Sbjct: 54 MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIDRARENQRVGRRTILFV 113 Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 +++ + + F + + + A T S+ + L SR A V K++ Sbjct: 114 DEVHRFNKSQQDAFLPY---IEDGTVTFIGATTENPSFELNNA-LLSR---ARVYKLTSL 166 Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAY---IVQRMER--------SLVFAEKLVDKMDNL 222 D + + + + D+Q + + A + ++QR+ SL + E L D Sbjct: 167 SVDEILQTLQQAIDDKQKGLGQHPADFHDNVLQRLAELVNGDARMSLNYLELLYDMASQD 226 Query: 223 ALSRGMGITRSLAAEV 238 A IT SL AEV Sbjct: 227 A-QGRKQITLSLLAEV 241 >gi|212528130|ref|XP_002144222.1| AAA family ATPase/60S ribosome export protein Rix7, putative [Penicillium marneffei ATCC 18224] gi|210073620|gb|EEA27707.1| AAA family ATPase/60S ribosome export protein Rix7, putative [Penicillium marneffei ATCC 18224] Length = 741 Score = 42.1 bits (98), Expect = 0.077, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P R V+L GP G GK+ LAN ++ S A S+ S + + L E D Sbjct: 208 PPRGVLLHGPPGCGKTMLANAFAADLGVPFISISAPSIVSGMSGESEKALREHFDEA 264 Score = 40.5 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 12/28 (42%), Positives = 18/28 (64%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS 94 V+L GP G GK+ LA +++SR+ S Sbjct: 518 VLLWGPPGCGKTLLAKAVANESRANFIS 545 >gi|207340221|gb|EDZ68640.1| YPR173Cp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 397 Score = 42.1 bits (98), Expect = 0.077, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 53/140 (37%), Gaps = 41/140 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P+ ++L GP G+GKS LA + ++ ST FS + L S + + ++ Sbjct: 125 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMAREN 184 Query: 113 ------LEDIDLLDFND------------TQLFHIINSI-HQYDSSLLMTARTFPVSWG- 152 ++++D L T+L +N + + L++ A P Sbjct: 185 KPSIIFIDEVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDS 244 Query: 153 -----------VCLPDLCSR 161 + LPDL +R Sbjct: 245 AIRRRFERRIYIPLPDLAAR 264 >gi|195112656|ref|XP_002000888.1| GI22277 [Drosophila mojavensis] gi|193917482|gb|EDW16349.1| GI22277 [Drosophila mojavensis] Length = 439 Score = 42.1 bits (98), Expect = 0.077, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 217 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 268 >gi|169825698|ref|YP_001695856.1| cell division protease ftsH-like protein [Lysinibacillus sphaericus C3-41] gi|168990186|gb|ACA37726.1| Cell division protease ftsH-like protein [Lysinibacillus sphaericus C3-41] Length = 658 Score = 42.1 bits (98), Expect = 0.077, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 70/205 (34%), Gaps = 45/205 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 ++LVGP G+GK+ LA + ++ FS + + Sbjct: 185 ILLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 244 Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + + L + ++ + +++ A P L Sbjct: 245 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANEGIIIIAATNRPDILDKAL 304 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 L+ + + PD E ++ ++ + LAA + QR A Sbjct: 305 ------LRPGRFDRQITVGHPDVKGREAILKVHARNKPLADTVDLAA-VAQRTP-GFSGA 356 Query: 213 EKLVDKMDNLAL--SRGMGITRSLA 235 L + ++ AL +R T ++A Sbjct: 357 -DLENLLNEAALVAARKSKRTINMA 380 >gi|153009313|ref|YP_001370528.1| recombination factor protein RarA [Ochrobactrum anthropi ATCC 49188] gi|151561201|gb|ABS14699.1| AAA ATPase central domain protein [Ochrobactrum anthropi ATCC 49188] Length = 438 Score = 42.1 bits (98), Expect = 0.077, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 62/182 (34%), Gaps = 28/182 (15%) Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDID 117 S +I GP G+GK+ +A + + ++ + S I + + Sbjct: 49 ASGSLGSMIFWGPPGTGKTTVARLLAGETDLAFEQISAIFSGVADLKKVFETA----RAR 104 Query: 118 LLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLK 163 + T LF H N + + +L+ T L SR Sbjct: 105 RMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVILIGATTENPSFELNAA---LLSR-- 159 Query: 164 AATVVKISLPDDDFLEKVIVKM--FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 A V+ D + + ++ + +R + +D++ +V+ + A L +++ Sbjct: 160 -ARVLTFHPHDGESIATLLTRAEEQEERPLPLDEEARVSLVRMADGDGRAALTLAEEVWR 218 Query: 222 LA 223 A Sbjct: 219 AA 220 >gi|149196409|ref|ZP_01873464.1| ATPase, AAA family protein [Lentisphaera araneosa HTCC2155] gi|149140670|gb|EDM29068.1| ATPase, AAA family protein [Lentisphaera araneosa HTCC2155] Length = 430 Score = 42.1 bits (98), Expect = 0.077, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 65/169 (38%), Gaps = 23/169 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV-LLEDIDLLDFNDTQ 125 +I GP G+GK+ LA+I S + + + ++DS + + RK V ++ T Sbjct: 49 IIFTGPPGTGKTSLASIISKHTEADFIA--LSAIDSSVSEVRKAVKAADEARKFSGRKTV 106 Query: 126 LF----HIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 LF H N Q + ++ T P LCSR + + + + Sbjct: 107 LFVDEIHRFNKAQQDSLLKDIENGTVRFIGATTHNPGFYLTPALCSR---SLIFTLKPLE 163 Query: 175 ----DDFLEKVIVK--MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 LE + K + ++ D++ ++ + E A +++ Sbjct: 164 ASAVKSLLEAKMTKIMKALEAELQFDEEGLKFLSENCEGDARRALTVIE 212 >gi|126653288|ref|ZP_01725399.1| cell division protein [Bacillus sp. B14905] gi|126589962|gb|EAZ84091.1| cell division protein [Bacillus sp. B14905] Length = 660 Score = 42.1 bits (98), Expect = 0.077, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 70/205 (34%), Gaps = 45/205 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 ++LVGP G+GK+ LA + ++ FS + + Sbjct: 185 ILLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 244 Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + + L + ++ + +++ A P L Sbjct: 245 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANEGIIIIAATNRPDILDKAL 304 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 L+ + + PD E ++ ++ + LAA + QR A Sbjct: 305 ------LRPGRFDRQITVGHPDVKGREAILKVHARNKPLADTVDLAA-VAQRTP-GFSGA 356 Query: 213 EKLVDKMDNLAL--SRGMGITRSLA 235 L + ++ AL +R T ++A Sbjct: 357 -DLENLLNEAALVAARKSKRTINMA 380 >gi|124028002|ref|YP_001013322.1| proteasome-activating nucleotidase [Hyperthermus butylicus DSM 5456] gi|123978696|gb|ABM80977.1| proteasome-activating nucleotidase [Hyperthermus butylicus DSM 5456] Length = 405 Score = 42.1 bits (98), Expect = 0.077, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 23/52 (44%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G GK+ LA + + +T +A + ++ E Sbjct: 164 PPKGVLLYGPPGCGKTLLAKAVASMTNATFIRVVASEFVHKYVGEGARIVRE 215 >gi|308799665|ref|XP_003074613.1| cell division protein FtsH-like protein (ISS) [Ostreococcus tauri] gi|116000784|emb|CAL50464.1| cell division protein FtsH-like protein (ISS) [Ostreococcus tauri] Length = 659 Score = 42.1 bits (98), Expect = 0.077, Method: Composition-based stats. Identities = 27/159 (16%), Positives = 57/159 (35%), Gaps = 35/159 (22%) Query: 68 ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP----------------V 111 +LVGP G+GK+ LA + +S + F A + + + Sbjct: 397 LLVGPPGTGKTLLARAVAGESGVSFFPVAASEFVELFVGRGAARVRELFAEARKSQPAII 456 Query: 112 LLEDIDLL------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC 159 ++++D + N+ QL ++ + S L++ A P + L L Sbjct: 457 FIDELDAVGSRRGAGLNEERDQTLNQLLVEMDGFSKDQSILILAATNRPDALDPAL--LR 514 Query: 160 -SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 RL V + P +++ R + +++ + Sbjct: 515 PGRL--TRRVFVGPPSQQGRAQILGVHL--RGLDLEEDV 549 >gi|94971570|ref|YP_593618.1| Holliday junction DNA helicase RuvB [Candidatus Koribacter versatilis Ellin345] gi|123381145|sp|Q1IHV6|RUVB_ACIBL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|94553620|gb|ABF43544.1| Holliday junction DNA helicase subunit RuvB [Candidatus Koribacter versatilis Ellin345] Length = 360 Score = 42.1 bits (98), Expect = 0.077, Method: Composition-based stats. Identities = 41/202 (20%), Positives = 84/202 (41%), Gaps = 29/202 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----DSILIDTR----KPVLLEDIDL 118 V+L GP G GK+ LANI +++ ++ +L D I T + + ++++ Sbjct: 78 VLLYGPPGLGKTTLANIIANEMQAQFQQTSGPTLQIKGDLTAILTNVRDKQVLFIDEVHR 137 Query: 119 LDFNDTQLFHIINSIHQYDSSLLM---------TARTFPVSW-------GVCLPDLCSRL 162 L +L + +++ Y +++ T P + G+ L SR Sbjct: 138 LQPALEEL--LYSAVEDYKLDIIIGQGPSARTHTIDVAPFTLVAATTRAGLLSAPLRSRF 195 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 V+++ + L+ ++ + + ID+ AA I R + A +L+ ++ + Sbjct: 196 --GIVLRLEFYTTEDLKIILKRSAEILNVEIDEGGAAEIATRCRGTPRIANRLLRRVRDY 253 Query: 223 ALSRG-MGITRSLAAEVLKETQ 243 A RG I R A + L+ + Sbjct: 254 AQVRGAGKIDRETAQKALEMLE 275 >gi|62460402|ref|NP_001014855.1| 26S protease regulatory subunit 4 [Bos taurus] gi|59858331|gb|AAX09000.1| proteasome 26S ATPase subunit 1 [Bos taurus] Length = 440 Score = 42.1 bits (98), Expect = 0.077, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 218 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 269 >gi|1054845|emb|CAA63364.1| END13 [Saccharomyces cerevisiae] Length = 437 Score = 42.1 bits (98), Expect = 0.077, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 53/140 (37%), Gaps = 41/140 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P+ ++L GP G+GKS LA + ++ ST FS + L S + + ++ Sbjct: 165 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMAREN 224 Query: 113 ------LEDIDLLDFND------------TQLFHIINSI-HQYDSSLLMTARTFPVSWG- 152 ++++D L T+L +N + + L++ A P Sbjct: 225 KPSIIFIDEVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDS 284 Query: 153 -----------VCLPDLCSR 161 + LPDL +R Sbjct: 285 AIRRRFERRIYIPLPDLAAR 304 >gi|24649446|ref|NP_524469.2| proteasome 26S subunit subunit 4 ATPase [Drosophila melanogaster] gi|195331448|ref|XP_002032413.1| GM23527 [Drosophila sechellia] gi|195573289|ref|XP_002104626.1| GD18337 [Drosophila simulans] gi|30581054|sp|P48601|PRS4_DROME RecName: Full=26S protease regulatory subunit 4; Short=P26s4 gi|7301070|gb|AAF56205.1| proteasome 26S subunit subunit 4 ATPase [Drosophila melanogaster] gi|16198307|gb|AAL13988.1| SD02658p [Drosophila melanogaster] gi|194121356|gb|EDW43399.1| GM23527 [Drosophila sechellia] gi|194200553|gb|EDX14129.1| GD18337 [Drosophila simulans] gi|220956224|gb|ACL90655.1| Pros26.4-PA [synthetic construct] Length = 439 Score = 42.1 bits (98), Expect = 0.077, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 217 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 268 >gi|6325431|ref|NP_015499.1| Vps4p [Saccharomyces cerevisiae S288c] gi|1706647|sp|P52917|VPS4_YEAST RecName: Full=Vacuolar protein sorting-associated protein 4; AltName: Full=DOA4-independent degradation protein 6; AltName: Full=Protein END13; AltName: Full=Vacuolar protein-targeting protein 10 gi|786322|gb|AAB68107.1| Vps4p [Saccharomyces cerevisiae] gi|151942944|gb|EDN61290.1| AAA ATPase [Saccharomyces cerevisiae YJM789] gi|190408096|gb|EDV11361.1| vacuolar protein sorting-associated protein VPS4 [Saccharomyces cerevisiae RM11-1a] gi|256272426|gb|EEU07408.1| Vps4p [Saccharomyces cerevisiae JAY291] gi|259150330|emb|CAY87133.1| Vps4p [Saccharomyces cerevisiae EC1118] gi|285815698|tpg|DAA11590.1| TPA: Vps4p [Saccharomyces cerevisiae S288c] gi|323335223|gb|EGA76513.1| Vps4p [Saccharomyces cerevisiae Vin13] gi|323346039|gb|EGA80330.1| Vps4p [Saccharomyces cerevisiae Lalvin QA23] Length = 437 Score = 42.1 bits (98), Expect = 0.077, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 53/140 (37%), Gaps = 41/140 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P+ ++L GP G+GKS LA + ++ ST FS + L S + + ++ Sbjct: 165 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMAREN 224 Query: 113 ------LEDIDLLDFND------------TQLFHIINSI-HQYDSSLLMTARTFPVSWG- 152 ++++D L T+L +N + + L++ A P Sbjct: 225 KPSIIFIDEVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDS 284 Query: 153 -----------VCLPDLCSR 161 + LPDL +R Sbjct: 285 AIRRRFERRIYIPLPDLAAR 304 >gi|301050560|ref|ZP_07197431.1| transposase domain protein [Escherichia coli MS 185-1] gi|300297747|gb|EFJ54132.1| transposase domain protein [Escherichia coli MS 185-1] Length = 162 Score = 42.1 bits (98), Expect = 0.078, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 43/115 (37%), Gaps = 24/115 (20%) Query: 61 SW--PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------- 110 W V+L G SG GKS LA D + S +L + RK Sbjct: 7 DWVDAGENVLLFGASGLGKSHLAAAIVDGVVGQGYRARFYSAGELLQELRKARAQLKLNE 66 Query: 111 ----------VLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWG 152 ++++D+ + + + LF +I ++ SL++T+ WG Sbjct: 67 LLLKLDRYRVIVVDDLGYVKRDSAETGVLFELIAHRYERG-SLVITSNHPFSMWG 120 >gi|255722928|ref|XP_002546398.1| hypothetical protein CTRG_05876 [Candida tropicalis MYA-3404] gi|240130915|gb|EER30477.1| hypothetical protein CTRG_05876 [Candida tropicalis MYA-3404] Length = 754 Score = 42.1 bits (98), Expect = 0.078, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 31/50 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S+ST FS A SL S + + ++ Sbjct: 508 PTRGMLLFGPPGTGKTMLARAVATESKSTFFSVSAASLVSKYLGESEKLV 557 >gi|257387828|ref|YP_003177601.1| ATPase AAA [Halomicrobium mukohataei DSM 12286] gi|257170135|gb|ACV47894.1| AAA family ATPase, CDC48 subfamily [Halomicrobium mukohataei DSM 12286] Length = 740 Score = 42.1 bits (98), Expect = 0.078, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 62/164 (37%), Gaps = 33/164 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P + V+L GP G+GK+ LA ++++ ++ FS + + + Sbjct: 222 PPQGVLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDASEE 281 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + ++++D + QL +++ + +++ A S Sbjct: 282 APSIIFIDELDSIAPKREDVTGEVERRVVAQLLTMMDGLESRGQVIVIAATNRVDS---V 338 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198 P L + ++I +PD+ E+++ R + + +A Sbjct: 339 DPALRRPGRFDREIEIGVPDEVGREEILQ--IHTRGMPLSDDVA 380 Score = 37.1 bits (85), Expect = 2.3, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 19/32 (59%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P V+L GP G+GK+ +A ++++ + S Sbjct: 495 PPSGVLLYGPPGTGKTLMAKAVANETDANFIS 526 >gi|195053572|ref|XP_001993700.1| GH19692 [Drosophila grimshawi] gi|193895570|gb|EDV94436.1| GH19692 [Drosophila grimshawi] Length = 439 Score = 42.1 bits (98), Expect = 0.078, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 217 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 268 >gi|194910105|ref|XP_001982075.1| GG12390 [Drosophila erecta] gi|195445240|ref|XP_002070237.1| GK11948 [Drosophila willistoni] gi|195505012|ref|XP_002099325.1| GE10845 [Drosophila yakuba] gi|190656713|gb|EDV53945.1| GG12390 [Drosophila erecta] gi|194166322|gb|EDW81223.1| GK11948 [Drosophila willistoni] gi|194185426|gb|EDW99037.1| GE10845 [Drosophila yakuba] Length = 439 Score = 42.1 bits (98), Expect = 0.078, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 217 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 268 >gi|194748000|ref|XP_001956437.1| btl [Drosophila ananassae] gi|190623719|gb|EDV39243.1| btl [Drosophila ananassae] Length = 1032 Score = 42.1 bits (98), Expect = 0.078, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 28/110 (25%) Query: 47 SAIEQAVRLIDSWPSWPSRV--------------VILVGPSGSGKSCLANIWSDKSRSTR 92 +E V +++ WPSR V+L GP G+GK+ L Sbjct: 724 PGLESVVGVLEEVLMWPSRYPTIFNASPLRNQAGVLLYGPPGTGKTYL------------ 771 Query: 93 FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLM 142 S +A S + +I + P LL + ++ + ++ N +L Sbjct: 772 VSQLATSWNLRIISVKGPELL--AKYIGQSEENVRNLFNRARSARPCVLF 819 >gi|326536234|ref|YP_004300672.1| gp44 clamp-loader subunit [Acinetobacter phage 133] gi|47779197|gb|AAT38483.1| gp44 clamp-loader subunit [Acinetobacter phage 133] Length = 319 Score = 42.1 bits (98), Expect = 0.078, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 67/175 (38%), Gaps = 35/175 (20%) Query: 73 SGSGKSCLANIWSDKSRSTR------------FSNIAKSLDSILIDTRKP--VLLEDIDL 118 G+GK+ +A + + + S L + +P +++++ D Sbjct: 53 PGTGKTTVARALCNGVDAHMLFVNGSDCKIDFVRGPLTTFASSLSNDGRPKVIVIDEFDR 112 Query: 119 LDFNDTQLFHI--INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 D QL H+ + + S+++TA + + L SR + V+K P + Sbjct: 113 NGLQDAQL-HMRTFMEAYGDNCSVIITA----NNLEGIVKPLRSR---SRVIKFGTPSET 164 Query: 177 FLEKVIVKMFADRQI--------FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + ++V+M Q+ ++ K+ +V + + K+ + +D + Sbjct: 165 DRKSMMVQMVKRAQLICANEGIEILEPKVLGALVLQ---NFPDFRKVTNLLDLYS 216 >gi|45767857|gb|AAH67741.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 1 [Homo sapiens] Length = 440 Score = 42.1 bits (98), Expect = 0.078, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 218 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 269 >gi|313817473|gb|EFS55187.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL046PA2] Length = 717 Score = 42.1 bits (98), Expect = 0.079, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 51/165 (30%), Gaps = 47/165 (28%) Query: 67 VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110 V+L GP G+GK+ LA + ++ S + + Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAPAI 262 Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + D + L + ++ + +L+ A P L Sbjct: 263 IFIDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDVHGGVILIAATNRPDVLDPAL 322 Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVK 184 PDL RLK V P DD L + + Sbjct: 323 LRPGRFDRQIAVEAPDLDGRLKILKVHAHGKPMADDVDLASIARR 367 >gi|313772804|gb|EFS38770.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL074PA1] gi|313810944|gb|EFS48658.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL083PA1] gi|314964587|gb|EFT08687.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL082PA1] Length = 717 Score = 42.1 bits (98), Expect = 0.079, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 51/165 (30%), Gaps = 47/165 (28%) Query: 67 VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110 V+L GP G+GK+ LA + ++ S + + Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAPAI 262 Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + D + L + ++ + +L+ A P L Sbjct: 263 IFIDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDVHGGVILIAATNRPDVLDPAL 322 Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVK 184 PDL RLK V P DD L + + Sbjct: 323 LRPGRFDRQIAVEAPDLDGRLKILKVHAHGKPMADDVDLASIARR 367 >gi|294464641|gb|ADE77829.1| unknown [Picea sitchensis] Length = 388 Score = 42.1 bits (98), Expect = 0.079, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 19/32 (59%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + V+L GP G+GK+ LA + +S + + Sbjct: 117 PPKGVLLYGPPGTGKTLLAKAIARESGAVFIN 148 >gi|255549242|ref|XP_002515675.1| Protein MSP1, putative [Ricinus communis] gi|223545218|gb|EEF46727.1| Protein MSP1, putative [Ricinus communis] Length = 387 Score = 42.1 bits (98), Expect = 0.079, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 47/150 (31%), Gaps = 35/150 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN----------------IAKSLDSILID 106 P + V+L GP G+GK+ LA + +S + + +A Sbjct: 114 PQKGVLLYGPPGTGKTMLAKAIARESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKL 173 Query: 107 TRKPVLLEDIDLLDFNDTQLFH--IINSIHQ------------YDSSLLMTARTFPVSWG 152 + ++++D H + N + +++ A P Sbjct: 174 QPAIIFIDEVDSFLGQRRSTDHEALTNMKTEFMALWDGFTTDHNARVMVLAATNRPSELD 233 Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 + L RL +I +PD ++ Sbjct: 234 EAI--LR-RLP--QSFEIGIPDRRERAAIL 258 >gi|188591551|ref|YP_001796150.1| transposase, IS21 family [Cupriavidus taiwanensis] gi|170938946|emb|CAP63953.1| transposase, IS21 family [Cupriavidus taiwanensis LMG 19424] Length = 243 Score = 42.1 bits (98), Expect = 0.079, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 46/128 (35%), Gaps = 30/128 (23%) Query: 53 VRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-- 110 + I+ + V+L+GPSG GK+ LA + ++ + + +++ Sbjct: 76 LAFIERAEN-----VVLLGPSGVGKTHLATALAYRATQAGIKSRFLTAADLMMQLATARQ 130 Query: 111 -----------------VLLEDIDLLDF--NDTQLFHIINSI--HQYDSSLLMTARTFPV 149 +++++I L F + LF N + S+++T+ Sbjct: 131 QGRLREYFNRAVMGPRLLVVDEIGYLTFGREEANLF--FNVVAKRYERGSMVLTSNLPFA 188 Query: 150 SWGVCLPD 157 W D Sbjct: 189 QWATAFAD 196 >gi|158523435|gb|ABW70832.1| AAA-family ATPase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 408 Score = 42.1 bits (98), Expect = 0.079, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 62/193 (32%), Gaps = 29/193 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS---------NIAKSLDSILIDTRKPVLLEDID 117 +IL G G GK+ LA I + R F ++ K + + L++I Sbjct: 39 LILCGKPGVGKTTLAKIIASSKRLEFFELSAVDSGVKDVKKIIADNQHLGSFVLFLDEIH 98 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 + + L + +L+ T L SR ++++ + Sbjct: 99 RFNKSQQDLLLPY---VESGKIILIGATTENPTYYLNNA---LVSR---VFILRLKRLNI 149 Query: 176 DFLEKVIVK------MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229 K+I + + A ID L I E K+++ ++ + L Sbjct: 150 SETRKLIQRAITKDELLAKHSFEIDDDLYNAIHNYSE---GDCRKILNLLERMFLISDRT 206 Query: 230 ITRSLAAEVLKET 242 T L ++ Sbjct: 207 NTIHLDKDLFDRA 219 >gi|149486736|ref|XP_001517805.1| PREDICTED: similar to P26s4, partial [Ornithorhynchus anatinus] Length = 388 Score = 42.1 bits (98), Expect = 0.079, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 166 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 217 >gi|146282639|ref|YP_001172792.1| recombination factor protein RarA [Pseudomonas stutzeri A1501] gi|145570844|gb|ABP79950.1| ATPase, AAA family [Pseudomonas stutzeri A1501] Length = 441 Score = 42.1 bits (98), Expect = 0.079, Method: Composition-based stats. Identities = 34/208 (16%), Positives = 75/208 (36%), Gaps = 28/208 (13%) Query: 57 DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 ++ ++ GP G GK+ LA + + S + F ++ L + + + + Sbjct: 40 EALEHGALHSMVFWGPPGVGKTTLARLLAKVSDAH-FETVSAVLAGVKEIRQAVEIAKQQ 98 Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162 T LF H N Q D +L+ T L SR Sbjct: 99 AAQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQ------IFIDKKLAAYIVQRMERSLVFAEKLV 216 A V + D+ L K++ + + + + + ++ ++ + L+ Sbjct: 155 --ARVYVLKSLDEAALRKLVTRALTEPKGLGELHLTLPEESFQMLLAAADGDGRRLLNLL 212 Query: 217 DKMDNLALSRGMGITRSLAAEVLKETQQ 244 + +LA +G I+ L ++L ++++ Sbjct: 213 ENASDLA-EQGGVISTDLLQDLLGDSRR 239 >gi|157131453|ref|XP_001655853.1| 26S protease regulatory subunit [Aedes aegypti] gi|94468994|gb|ABF18346.1| 26S proteasome regulatory chain 4 [Aedes aegypti] gi|108871524|gb|EAT35749.1| 26S protease regulatory subunit [Aedes aegypti] Length = 438 Score = 42.1 bits (98), Expect = 0.079, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 216 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 267 >gi|91791126|ref|YP_552076.1| IstB-like ATP-binding protein [Polaromonas sp. JS666] gi|91701007|gb|ABE47178.1| IstB-like ATP-binding protein [Polaromonas sp. JS666] Length = 275 Score = 42.1 bits (98), Expect = 0.079, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 49/113 (43%), Gaps = 23/113 (20%) Query: 67 VILVGPSGSGKSCLANI-----WSDKSRSTRFSNIAKSLDSILIDTRK------PVLLED 115 +L+G G+GK+ LA + K + RF + ++ + + R+ + L Sbjct: 103 AVLIGGPGTGKTHLATAIGVSGIAAKGKRVRFYSTVDLVNELEKEKREGKAGRIALALMR 162 Query: 116 IDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 +DL+ ++ LFH+++ ++++ +S+++T W D Sbjct: 163 LDLVILDELGYLPFSQTGGALLFHLLSKLYEH-TSVVITTNLSFSEWSAVFGD 214 >gi|125775059|ref|XP_001358781.1| GA18789 [Drosophila pseudoobscura pseudoobscura] gi|54638522|gb|EAL27924.1| GA18789 [Drosophila pseudoobscura pseudoobscura] Length = 439 Score = 42.1 bits (98), Expect = 0.079, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 217 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 268 >gi|313806394|gb|EFS44901.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL087PA2] Length = 717 Score = 42.1 bits (98), Expect = 0.079, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 51/165 (30%), Gaps = 47/165 (28%) Query: 67 VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110 V+L GP G+GK+ LA + ++ S + + Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAPAI 262 Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + D + L + ++ + +L+ A P L Sbjct: 263 IFIDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDVHGGVILIAATNRPDVLDPAL 322 Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVK 184 PDL RLK V P DD L + + Sbjct: 323 LRPGRFDRQIAVEAPDLDGRLKILKVHAHGKPMADDVDLASIARR 367 >gi|291458146|ref|ZP_06597536.1| ATPase, AAA family [Oribacterium sp. oral taxon 078 str. F0262] gi|291419229|gb|EFE92948.1| ATPase, AAA family [Oribacterium sp. oral taxon 078 str. F0262] Length = 430 Score = 42.1 bits (98), Expect = 0.079, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 61/159 (38%), Gaps = 34/159 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRF-----SNIAKSLDSILIDTRKPVLLEDIDLLDF 121 +I GP G+GK+ LA + + +++ S K ++ I+ +K + Sbjct: 55 LIFYGPPGTGKTTLARLIARTTKAEFCQLNATSAGKKEMEEIVERAKKNL------GGYG 108 Query: 122 NDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 T LF H N + S +L+ A T + V L SR + + + Sbjct: 109 KRTILFVDEIHRFNKAQQDYLLPYVEDGSLILIGATTENPYFEVNSA-LLSR---SRIFE 164 Query: 170 ISLPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYI 201 + + + ++ + +D R + I+++ ++ Sbjct: 165 LKPLTGEEIRILLKRAVSDQRRGLGSFRLRIEEEALDFL 203 >gi|282165489|ref|YP_003357874.1| cell division control protein 48 [Methanocella paludicola SANAE] gi|282157803|dbj|BAI62891.1| cell division control protein 48 [Methanocella paludicola SANAE] Length = 839 Score = 42.1 bits (98), Expect = 0.079, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 20/32 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + ++L GP G+GK+ LA +++S + S Sbjct: 496 PPKGIVLYGPPGTGKTLLARAVANESEANFIS 527 Score = 38.6 bits (89), Expect = 0.81, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 20/32 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + V+L GP G+GK+ LA +++ + FS Sbjct: 225 PPKGVLLHGPPGTGKTLLAKAVANECGAEFFS 256 >gi|242093540|ref|XP_002437260.1| hypothetical protein SORBIDRAFT_10g023770 [Sorghum bicolor] gi|241915483|gb|EER88627.1| hypothetical protein SORBIDRAFT_10g023770 [Sorghum bicolor] Length = 398 Score = 42.1 bits (98), Expect = 0.079, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + V+L GP G+GK+ LA + + ++ ++ I ++ E Sbjct: 171 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIRE-------- 222 Query: 123 DTQLFHIINSIHQYD 137 + N ++ Sbjct: 223 ------MFNYAREHQ 231 >gi|227530160|ref|ZP_03960209.1| recombination ATPase [Lactobacillus vaginalis ATCC 49540] gi|227349913|gb|EEJ40204.1| recombination ATPase [Lactobacillus vaginalis ATCC 49540] Length = 441 Score = 42.1 bits (98), Expect = 0.079, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 49/128 (38%), Gaps = 21/128 (16%) Query: 48 AIEQAVR-LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSIL 104 + +R LI+ +IL GP G GK+ LA I + +++S FS + S+ I Sbjct: 36 GNGKVLRDLIEHDQ---VSSLILWGPPGVGKTTLAEIIAQQTKSHFITFSAVTSSIRDIR 92 Query: 105 -----------IDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 R +++I + F + S +L+ A T S+ + Sbjct: 93 KIMEEAEKNREFGERTICFIDEIHRFNKAQQDAFLPF---VERGSIILIGATTENPSFEI 149 Query: 154 CLPDLCSR 161 L SR Sbjct: 150 NSA-LLSR 156 >gi|238501396|ref|XP_002381932.1| proteasome regulatory particle subunit Rpt5, putative [Aspergillus flavus NRRL3357] gi|317142566|ref|XP_001818955.2| 26S protease regulatory subunit 6A [Aspergillus oryzae RIB40] gi|220692169|gb|EED48516.1| proteasome regulatory particle subunit Rpt5, putative [Aspergillus flavus NRRL3357] Length = 462 Score = 42.1 bits (98), Expect = 0.079, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 53/160 (33%), Gaps = 38/160 (23%) Query: 70 VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113 GP G+GK+ LA + ++ +T L + I ++ + Sbjct: 248 YGPPGTGKTLLARACAAETNATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPSIIFI 307 Query: 114 EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158 +++D + + ++N D ++ A L L Sbjct: 308 DELDAVGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRIKVLAATNRVDVLDPAL--L 365 Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 S RL ++ LP+++ ++ R++ +D + Sbjct: 366 RSGRLD--RKIEFPLPNEEARANILQ--IHSRKMAVDDSV 401 >gi|118594496|ref|ZP_01551843.1| Deoxynucleoside kinase [Methylophilales bacterium HTCC2181] gi|118440274|gb|EAV46901.1| Deoxynucleoside kinase [Methylophilales bacterium HTCC2181] Length = 215 Score = 42.1 bits (98), Expect = 0.079, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 7/72 (9%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123 +++ GP GSGKS LA + +++ + FS A+ + P ED+ Sbjct: 7 YPYIVVEGPIGSGKSTLARLLANQFNANMFSEKAERNPFL------PKFYEDMKHYALP- 59 Query: 124 TQLFHIINSIHQ 135 TQLF + +Q Sbjct: 60 TQLFFLFQRANQ 71 >gi|46109186|ref|XP_381651.1| hypothetical protein FG01475.1 [Gibberella zeae PH-1] Length = 790 Score = 42.1 bits (98), Expect = 0.079, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 64/194 (32%), Gaps = 40/194 (20%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTR----------------KP 110 V+LVGP G+GK+ LA + ++ F D I + Sbjct: 343 VLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEIFVGVGAKRVRELFTAAKNKSPAI 402 Query: 111 VLLEDIDLLDF-----NDT-------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158 V ++++D + + QL ++ Q +++ A P L Sbjct: 403 VFIDELDAIGGKRNPRDQAHAKQTLNQLLTELDGFDQDSKIIIIGATNLPKMLDKAL--- 459 Query: 159 CSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRME-RSLVFAEKL 215 +R + V + LPD ++ ++I + + I R +S E Sbjct: 460 -TRPGRFDRHVNVDLPDVRGRIAILKHHA--KKIKVSPDVDLEAIAARCPGQSGAELE-- 514 Query: 216 VDKMDNLALSRGMG 229 + ++ AL Sbjct: 515 -NMLNVAALRASRA 527 >gi|325115158|emb|CBZ50714.1| putative AAA family ATPase domain-containing protein [Neospora caninum Liverpool] Length = 786 Score = 42.1 bits (98), Expect = 0.080, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 21/32 (65%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P+R ++L GP GSGKS ++ I + ++ + F Sbjct: 509 PARSLLLYGPPGSGKSLISRIIATEAGAMFFD 540 >gi|218197427|gb|EEC79854.1| hypothetical protein OsI_21333 [Oryza sativa Indica Group] Length = 770 Score = 42.1 bits (98), Expect = 0.080, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 39/108 (36%), Gaps = 29/108 (26%) Query: 60 PSW----PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP----- 110 P W P ++L GP G GK+ LA+ ++++ + A + S + + Sbjct: 217 PRWLGVKPVAGLLLHGPPGCGKTTLAHAIANETGVPFYKISAPEVVSGVSGASEENIRSL 276 Query: 111 -----------VLLEDIDLLDFNDTQLFHIINSIHQYDSSL---LMTA 144 V +++ID + N + + + LMT Sbjct: 277 FKKAYRTAPSIVFIDEIDAIASKRE------NLQREMERRIVTQLMTC 318 >gi|189501748|ref|YP_001957465.1| Holliday junction DNA helicase RuvB [Candidatus Amoebophilus asiaticus 5a2] gi|238692303|sp|B3ER84|RUVB_AMOA5 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|189497189|gb|ACE05736.1| hypothetical protein Aasi_0299 [Candidatus Amoebophilus asiaticus 5a2] Length = 342 Score = 42.1 bits (98), Expect = 0.080, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 3/74 (4%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P V+L GP G GK+ LA+I +++ + LD L D+L + Sbjct: 55 PLDHVLLHGPPGLGKTTLAHIIANELGANIRITSGPVLDKPGDLAGLLTNLGPYDVLFID 114 Query: 123 DTQLFHIINSIHQY 136 + H +N I + Sbjct: 115 EI---HRLNPIVEE 125 >gi|170289856|ref|YP_001736672.1| AAA family ATPase, CDC48 subfamily protein [Candidatus Korarchaeum cryptofilum OPF8] gi|170173936|gb|ACB06989.1| AAA family ATPase, CDC48 subfamily [Candidatus Korarchaeum cryptofilum OPF8] Length = 732 Score = 42.1 bits (98), Expect = 0.080, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 75/206 (36%), Gaps = 42/206 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106 P + V+L GP G+GK+ LA +++S + S + + + + Sbjct: 213 PPKGVLLYGPPGTGKTLLAKAVANESNAHFISISGPEIMSKYYGESEKRLREIFEEAEKN 272 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + +++ A P + Sbjct: 273 APSIIFMDEIDAIAPKREEVTGEVERRVVAQLLALMDGLKGRGEVIVIGATNRPEAID-- 330 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 P L + ++I +PD + ++++ + R + + + ++R L Sbjct: 331 -PALRRPGRFDREIEIGVPDREGRKEIL--LIHTRNMPLADDV------DLDR-LADITH 380 Query: 215 LVDKMDNLALSR--GMGITRSLAAEV 238 D AL R M R L EV Sbjct: 381 GFVGADLAALVREAAMRALRRLMKEV 406 Score = 36.3 bits (83), Expect = 3.9, Method: Composition-based stats. Identities = 10/28 (35%), Positives = 18/28 (64%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS 94 ++L GP G+GK+ LA +++S + S Sbjct: 491 ILLFGPPGTGKTLLAKAVANESEANFIS 518 >gi|169832181|ref|YP_001718163.1| recombination factor protein RarA [Candidatus Desulforudis audaxviator MP104C] gi|169639025|gb|ACA60531.1| AAA ATPase, central domain protein [Candidatus Desulforudis audaxviator MP104C] Length = 435 Score = 42.1 bits (98), Expect = 0.080, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 49/144 (34%), Gaps = 31/144 (21%) Query: 65 RVVILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 +IL GP GSGK+ LA+I S KS S ++ + + D Sbjct: 59 GSIILYGPPGSGKTTLAHIISRTTKSNFRTVSAVSSGVKELRQVIEAAA---DSLKFHGR 115 Query: 123 DTQLF----HIINSIHQYDSSLLM-------------TARTFPVSWGVCLPDLCSRLKAA 165 T LF H N Q +L+ T L SR + Sbjct: 116 KTILFVDECHAFNKSQQD---VLLPGIEKGIVTFIGGTTENPYFEMRGA---LLSR---S 166 Query: 166 TVVKISLPDDDFLEKVIVKMFADR 189 + ++ + LE ++ + ADR Sbjct: 167 RIFRLEELSTEDLESILRRALADR 190 >gi|156055944|ref|XP_001593896.1| hypothetical protein SS1G_05324 [Sclerotinia sclerotiorum 1980] gi|154703108|gb|EDO02847.1| hypothetical protein SS1G_05324 [Sclerotinia sclerotiorum 1980 UF-70] Length = 2921 Score = 42.1 bits (98), Expect = 0.080, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 22/45 (48%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109 ++L GP G+GK+ LA + +S +T ++ + + + Sbjct: 2652 PGLLLYGPPGTGKTLLAKAVAKESGATVLEISGAEVNDMYVGEGE 2696 >gi|126303142|ref|XP_001371530.1| PREDICTED: similar to spastin protein isoform 2 [Monodelphis domestica] Length = 587 Score = 42.1 bits (98), Expect = 0.080, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 30/50 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S +T F+ A SL S + + ++ Sbjct: 345 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 394 >gi|21355121|ref|NP_652016.1| peroxin 1 [Drosophila melanogaster] gi|7294415|gb|AAF49760.1| peroxin 1 [Drosophila melanogaster] gi|18447347|gb|AAL68239.1| LD43687p [Drosophila melanogaster] gi|220947334|gb|ACL86210.1| l(3)70Da-PA [synthetic construct] Length = 1006 Score = 42.1 bits (98), Expect = 0.080, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 28/110 (25%) Query: 47 SAIEQAVRLIDSWPSWPSRV--------------VILVGPSGSGKSCLANIWSDKSRSTR 92 +E V +++ WPSR V+L GP G+GK+ L Sbjct: 723 PGLESVVGVLEEVLMWPSRYPTIFNASPLRNQAGVLLYGPPGTGKTYL------------ 770 Query: 93 FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLM 142 S +A S + +I + P LL + ++ + ++ N +L Sbjct: 771 VSQLATSWNLRIISVKGPELL--AKYIGQSEENVRNLFNRARSARPCVLF 818 >gi|14590059|ref|NP_142123.1| replication factor C large subunit [Pyrococcus horikoshii OT3] gi|42559336|sp|O57853|RFCL_PYRHO RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|3256499|dbj|BAA29182.1| 468aa long hypothetical replication factor C subunit [Pyrococcus horikoshii OT3] Length = 468 Score = 42.1 bits (98), Expect = 0.080, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 66/193 (34%), Gaps = 36/193 (18%) Query: 48 AIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRFS---------- 94 A+E+ I+SW ++L GP GSGK+ + + Sbjct: 24 ALEKVRAWIESWLHGNPPKKKALLLAGPPGSGKTTTVYALAHEYNFEVIELNASDERTYN 83 Query: 95 -----NIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTART 146 A I+ RK + L++ D + + I + + ++M A Sbjct: 84 KIARYVQAAYTMDIMGKRRKIIFLDEADNIEPSGAPEIA-----KLIDKARNPIIMAAN- 137 Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206 W V ++ R A +V+ + + +V++ I + K++ I + Sbjct: 138 --HYWEV-PKEIRDR---AELVEYKRLNQRDVISALVRILKREGITVPKEILTEIAK--- 188 Query: 207 RSLVFAEKLVDKM 219 RS ++ + Sbjct: 189 RSSGDLRAAINDL 201 >gi|309791814|ref|ZP_07686301.1| AAA family ATPase, CDC48 subfamily protein [Oscillochloris trichoides DG6] gi|308226136|gb|EFO79877.1| AAA family ATPase, CDC48 subfamily protein [Oscillochloris trichoides DG6] Length = 710 Score = 42.1 bits (98), Expect = 0.081, Method: Composition-based stats. Identities = 33/219 (15%), Positives = 79/219 (36%), Gaps = 51/219 (23%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILIDTRKP 110 V+L GP GSGK+ +A ++++ + +N+ D Sbjct: 220 VLLYGPPGSGKTLIARAVANETSAHFVTINGPEIIDKLYGASEANLRGIFDEARKRAPAI 279 Query: 111 VLLEDIDLLDFNDT--------------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156 + +++ID + QL +++ + + +++ A P S P Sbjct: 280 IFIDEIDAIAPKREDLSGDRQVERRVVAQLLALMDGLESRGNVIVIAATNLPNSLD---P 336 Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYI-----------VQR 204 L + + I++PD D +++ R + + ++ ++ +Q Sbjct: 337 ALRRPGRFDREISINVPDKDGRAEILE--IHTRGMPLAAEVNLDWLAGVTHGFVGADLQA 394 Query: 205 MERS--LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKE 241 + R + +L+ +D + + +A EVL + Sbjct: 395 LCREAAMGALRRLLPDIDFS--QAQIPYDKLMALEVLPD 431 Score = 37.4 bits (86), Expect = 1.8, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 17/83 (20%) Query: 32 FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--------------VILVGPSGSGK 77 F ++ DD+ +E RL+ WP R V+L GP G+GK Sbjct: 449 FTEIPDVTWDDV---GGLEDVRRLLIEAVEWPLRHARAFEHLGVRTPKGVLLYGPPGTGK 505 Query: 78 SCLANIWSDKSRSTRFSNIAKSL 100 + LA + +S + S L Sbjct: 506 TLLAKALARESEANFISVKGPEL 528 >gi|304413825|ref|ZP_07395242.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Candidatus Regiella insecticola LSR1] gi|304283545|gb|EFL91940.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Candidatus Regiella insecticola LSR1] Length = 423 Score = 42.1 bits (98), Expect = 0.081, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 42/105 (40%), Gaps = 20/105 (19%) Query: 29 FFSFPRCLGISRDDLLVH-----SAIEQAV-----RLIDSWPSWP----SRVVILVGPSG 74 P + DD ++ A+ AV RL + + ++L+GP+G Sbjct: 63 ALPTPHEIRHHLDDYVIGQEQAKKALAVAVYNHYKRLCNGDSNNGVELGKSNILLIGPTG 122 Query: 75 SGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 SGK+ LA + RF ++ ++ T + ED++ + Sbjct: 123 SGKTLLAETLA------RFLDVPFTMADATTLTEAGYVGEDVENI 161 >gi|302782429|ref|XP_002972988.1| hypothetical protein SELMODRAFT_98264 [Selaginella moellendorffii] gi|300159589|gb|EFJ26209.1| hypothetical protein SELMODRAFT_98264 [Selaginella moellendorffii] Length = 570 Score = 42.1 bits (98), Expect = 0.081, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 1/72 (1%) Query: 43 LLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 + S + A+ +P V+ L+GP G+GK+ LA + ++ F+ A Sbjct: 340 FQIVSCLRGALNFRSLGAKFPKGVL-LIGPPGTGKTLLARALAGEAGVPFFAASASEFVE 398 Query: 103 ILIDTRKPVLLE 114 + + + E Sbjct: 399 MFVGRGAARIRE 410 >gi|300711801|ref|YP_003737615.1| proteasome-activating nucleotidase [Halalkalicoccus jeotgali B3] gi|299125484|gb|ADJ15823.1| proteasome-activating nucleotidase [Halalkalicoccus jeotgali B3] Length = 403 Score = 42.1 bits (98), Expect = 0.081, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 29/65 (44%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P V+L GP G+GK+ LA ++++ +T L I ++ + ++ + Sbjct: 181 PPSGVLLYGPPGTGKTMLAKAVANETDATFIKMAGSELVHKFIGEGAKLVRDLFEVARSH 240 Query: 123 DTQLF 127 + + Sbjct: 241 EPAVL 245 >gi|34496831|ref|NP_901046.1| recombination factor protein RarA [Chromobacterium violaceum ATCC 12472] gi|34102686|gb|AAQ59051.1| probable ATPase associated with chromosome architecture [Chromobacterium violaceum ATCC 12472] Length = 443 Score = 42.1 bits (98), Expect = 0.081, Method: Composition-based stats. Identities = 40/180 (22%), Positives = 64/180 (35%), Gaps = 28/180 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL---DFND 123 +IL GP G GK+ LA I + + A I +E + Sbjct: 50 MILWGPPGVGKTTLARILAASFDAEFIPISAVFAGVKDIRE----AVEKAHAVLQRSGRR 105 Query: 124 TQLF----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKI 170 T LF H N Q D+ L L+T A T S+ V L SR A V + Sbjct: 106 TILFVDEVHRFNKSQQ-DAFLPFVESGLITFIGATTENPSFEVNSA-LLSR---AQVYVL 160 Query: 171 SLPDDDFLEKVIVKMF---ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 + +D L+++ + A + D + + + L+++ A +RG Sbjct: 161 NSLSEDELKQLFARARTEGALDGLNFDDAAVSTLTGYADGDARRFLNLLEQTRTAAQARG 220 >gi|83312305|ref|YP_422569.1| ATP-dependent Zn protease [Magnetospirillum magneticum AMB-1] gi|82947146|dbj|BAE52010.1| ATP-dependent Zn protease [Magnetospirillum magneticum AMB-1] Length = 546 Score = 42.1 bits (98), Expect = 0.081, Method: Composition-based stats. Identities = 34/204 (16%), Positives = 69/204 (33%), Gaps = 47/204 (23%) Query: 68 ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP----------------V 111 +LVGP G+GK+ LA + ++ F+ + + + Sbjct: 192 LLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEMFVGVGASRVRDMFEQGKKNAPCII 251 Query: 112 LLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCLP 156 +++ID + D + L + ++ + +L+ A P L Sbjct: 252 FIDEIDAVGRHRGAGLGGGNDEREQTLNQLLVEMDGFESNEGVILIAATNRPDVLDPAL- 310 Query: 157 DLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213 L+ V + PD EK+I R++ + + A I+ R A Sbjct: 311 -----LRPGRFDRQVVVPNPDILGREKIIKVHM--RKVPLSPDVDARIIARGTPGFSGA- 362 Query: 214 KLVDKMDNLAL----SRGMGITRS 233 L + ++ AL + +T + Sbjct: 363 DLANLVNEAALLAARAGKRVVTMA 386 >gi|315104914|gb|EFT76890.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL050PA2] Length = 717 Score = 42.1 bits (98), Expect = 0.081, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 51/165 (30%), Gaps = 47/165 (28%) Query: 67 VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110 V+L GP G+GK+ LA + ++ S + + Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAPAI 262 Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + D + L + ++ + +L+ A P L Sbjct: 263 IFIDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDVHGGVILIAATNRPDVLDPAL 322 Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVK 184 PDL RLK V P DD L + + Sbjct: 323 LRPGRFDRQIAVEAPDLDGRLKILKVHAHGKPMADDVDLASIARR 367 >gi|310658620|ref|YP_003936341.1| ATP-dependent DNA helicase, component of ruvABC resolvasome [Clostridium sticklandii DSM 519] gi|308825398|emb|CBH21436.1| ATP-dependent DNA helicase, component of RuvABC resolvasome [Clostridium sticklandii] Length = 333 Score = 42.1 bits (98), Expect = 0.081, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 3/70 (4%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G GK+ L++I + + +++ L+D D+L ++ Sbjct: 59 VLLYGPPGLGKTTLSHIIASEMGVDIKVTSGPAIERAGDLAAILTNLKDKDILFIDEI-- 116 Query: 127 FHIINSIHQY 136 H IN + Sbjct: 117 -HRINRNVEE 125 >gi|307354036|ref|YP_003895087.1| AAA family ATPase [Methanoplanus petrolearius DSM 11571] gi|307157269|gb|ADN36649.1| AAA family ATPase, CDC48 subfamily [Methanoplanus petrolearius DSM 11571] Length = 846 Score = 42.1 bits (98), Expect = 0.081, Method: Composition-based stats. Identities = 21/149 (14%), Positives = 54/149 (36%), Gaps = 31/149 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106 P + V+L GP G+GK+ +A +++S + S + + D + Sbjct: 215 PPKGVLLYGPPGTGKTLIAKAVANESGAHFISIAGPEVISKYYGESEQRLREIFDEAEDN 274 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + ++++D + QL +++ + + +++ A Sbjct: 275 APSIIFIDELDSIAPRREDVTGEVERRVVAQLLTMMDGLEERGQVVVIGAT---NRLDAI 331 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIV 183 P L + ++I PD+ +++ Sbjct: 332 DPALRRPGRFDREIEIGPPDESDRLEILR 360 Score = 39.0 bits (90), Expect = 0.69, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 19/32 (59%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P R V+L GP G+GK+ +A +++S + Sbjct: 525 PPRGVLLYGPPGTGKTLIAKAVANESGANFIP 556 >gi|288930996|ref|YP_003435056.1| 26S proteasome subunit P45 family [Ferroglobus placidus DSM 10642] gi|288893244|gb|ADC64781.1| 26S proteasome subunit P45 family [Ferroglobus placidus DSM 10642] Length = 400 Score = 42.1 bits (98), Expect = 0.081, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 16/79 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V+L GP G+GK+ LA + ++ +T + I ++ Sbjct: 174 PPKGVLLYGPPGTGKTLLAKAVATETNATFIRVVGSEFVQKYIGEGARLVREVFQLAREK 233 Query: 113 ------LEDIDLLDFNDTQ 125 +++ID + T Sbjct: 234 APSIIFIDEIDAIAARRTA 252 >gi|242398848|ref|YP_002994272.1| Proteasome-activating nucleotidase [Thermococcus sibiricus MM 739] gi|242265241|gb|ACS89923.1| Proteasome-activating nucleotidase [Thermococcus sibiricus MM 739] Length = 400 Score = 42.1 bits (98), Expect = 0.081, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 23/52 (44%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P R V+L GP G GK+ +A + + +T I L I ++ E Sbjct: 174 PPRGVLLYGPPGCGKTLMAKALAHEVNATFIRVIGSELVRKYIGEGARLVSE 225 >gi|257784645|ref|YP_003179862.1| ATP-dependent metalloprotease FtsH [Atopobium parvulum DSM 20469] gi|310943118|sp|C8W731|FTSH_ATOPD RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|257473152|gb|ACV51271.1| ATP-dependent metalloprotease FtsH [Atopobium parvulum DSM 20469] Length = 644 Score = 42.1 bits (98), Expect = 0.081, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 50/154 (32%), Gaps = 47/154 (30%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110 R +LVGP G+GK+ +A + ++ F + + Sbjct: 218 RGALLVGPPGTGKTLIAKAVAGEAGVPFFQIAGSEFVEMFVGRGAAKVRDLFKQANEKAP 277 Query: 111 --VLLEDIDLLDF---------ND-----TQLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + +++ID + ++ QL ++ + +++ A P + Sbjct: 278 CIIFIDEIDAVGKRRDASLNSNDEREQTLNQLLSEMDGFDNHKGIVVLAATNRPETLDKA 337 Query: 152 -----------GVCLPDLCSRLKAATVVKISLPD 174 V LPDL R V++I D Sbjct: 338 LLRPGRFDRRIPVELPDLKGR---EAVLQIHAND 368 >gi|170051679|ref|XP_001861875.1| 26S protease regulatory subunit 4 [Culex quinquefasciatus] gi|167872831|gb|EDS36214.1| 26S protease regulatory subunit 4 [Culex quinquefasciatus] Length = 438 Score = 42.1 bits (98), Expect = 0.081, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 216 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 267 >gi|225464119|ref|XP_002264023.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|147867423|emb|CAN83271.1| hypothetical protein VITISV_001131 [Vitis vinifera] Length = 434 Score = 42.1 bits (98), Expect = 0.081, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 46/141 (32%), Gaps = 42/141 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS----------------ILID 106 P R +L GP G+GKS LA + ++ ST FS + L S Sbjct: 163 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFQMARES 222 Query: 107 TRKPVLLEDIDLLDFND--------------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 + +++ID L L + H L++ A P S Sbjct: 223 APSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYSLD 282 Query: 153 ------------VCLPDLCSR 161 + LPDL +R Sbjct: 283 QAIRRRFDKRIYIPLPDLKAR 303 >gi|126282307|ref|XP_001371702.1| PREDICTED: similar to P26s4 [Monodelphis domestica] Length = 461 Score = 42.1 bits (98), Expect = 0.081, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 239 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 290 >gi|109104429|ref|XP_001103312.1| PREDICTED: 26S protease regulatory subunit 4-like [Macaca mulatta] Length = 440 Score = 42.1 bits (98), Expect = 0.081, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 218 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 269 >gi|403456|gb|AAA35484.1| 26S protease (S4) regulatory subunit [Homo sapiens] Length = 440 Score = 42.1 bits (98), Expect = 0.081, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 218 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 269 >gi|15219503|ref|NP_175120.1| 26S proteasome regulatory complex subunit p42D, putative [Arabidopsis thaliana] gi|297846852|ref|XP_002891307.1| hypothetical protein ARALYDRAFT_891428 [Arabidopsis lyrata subsp. lyrata] gi|75336159|sp|Q9MAK9|PS10B_ARATH RecName: Full=26S protease regulatory subunit S10B homolog B; AltName: Full=26S proteasome AAA-ATPase subunit RPT4b; AltName: Full=26S proteasome subunit S10B homolog B; AltName: Full=Regulatory particle triple-A ATPase subunit 4b gi|7767657|gb|AAF69154.1|AC007915_6 F27F5.8 [Arabidopsis thaliana] gi|17065266|gb|AAL32787.1| similar to 26S proteasome AAA-ATPase subunit RPT4a [Arabidopsis thaliana] gi|21387177|gb|AAM47992.1| 26S proteasome AAA-ATPase subunit RPT4a-like protein [Arabidopsis thaliana] gi|297337149|gb|EFH67566.1| hypothetical protein ARALYDRAFT_891428 [Arabidopsis lyrata subsp. lyrata] gi|332193951|gb|AEE32072.1| AAA-type ATPase family protein [Arabidopsis thaliana] Length = 399 Score = 42.1 bits (98), Expect = 0.081, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + V+L GP G+GK+ LA + + ++ ++ I ++ E Sbjct: 172 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIRE-------- 223 Query: 123 DTQLFHIINSIHQYD 137 + N ++ Sbjct: 224 ------MFNYAREHQ 232 >gi|6679501|ref|NP_032973.1| 26S protease regulatory subunit 4 [Mus musculus] gi|16923972|ref|NP_476464.1| 26S protease regulatory subunit 4 [Rattus norvegicus] gi|24430151|ref|NP_002793.2| 26S protease regulatory subunit 4 [Homo sapiens] gi|113931412|ref|NP_001039154.1| proteasome (prosome, macropain) 26S subunit, ATPase, 1 [Xenopus (Silurana) tropicalis] gi|114654359|ref|XP_510114.2| PREDICTED: 26S protease regulatory subunit 4 isoform 3 [Pan troglodytes] gi|194038242|ref|XP_001928020.1| PREDICTED: 26S protease regulatory subunit 4 [Sus scrofa] gi|194225274|ref|XP_001494140.2| PREDICTED: proteasome (prosome, macropain) 26S subunit, ATPase, 1 [Equus caballus] gi|296215716|ref|XP_002754239.1| PREDICTED: 26S protease regulatory subunit 4 [Callithrix jacchus] gi|297298437|ref|XP_001086338.2| PREDICTED: 26S protease regulatory subunit 4 isoform 1 [Macaca mulatta] gi|297714911|ref|XP_002833857.1| PREDICTED: 26S protease regulatory subunit 4-like [Pongo abelii] gi|332223518|ref|XP_003260920.1| PREDICTED: 26S protease regulatory subunit 4 isoform 1 [Nomascus leucogenys] gi|49065780|sp|P62193|PRS4_RAT RecName: Full=26S protease regulatory subunit 4; Short=P26s4; AltName: Full=26S proteasome AAA-ATPase subunit RPT2; AltName: Full=Proteasome 26S subunit ATPase 1 gi|49065817|sp|P62191|PRS4_HUMAN RecName: Full=26S protease regulatory subunit 4; Short=P26s4; AltName: Full=26S proteasome AAA-ATPase subunit RPT2; AltName: Full=Proteasome 26S subunit ATPase 1 gi|49065818|sp|P62192|PRS4_MOUSE RecName: Full=26S protease regulatory subunit 4; Short=P26s4; AltName: Full=26S proteasome AAA-ATPase subunit RPT2; AltName: Full=Proteasome 26S subunit ATPase 1 gi|1066067|gb|AAB34137.1| P26s4 [Mus musculus] gi|1395182|dbj|BAA09341.1| proteasomal ATPase (S4) [Rattus norvegicus] gi|12653481|gb|AAH00512.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 1 [Homo sapiens] gi|13277996|gb|AAH03860.1| Protease (prosome, macropain) 26S subunit, ATPase 1 [Mus musculus] gi|26353418|dbj|BAC40339.1| unnamed protein product [Mus musculus] gi|32879995|gb|AAP88828.1| proteasome (prosome, macropain) 26S subunit, ATPase, 1 [Homo sapiens] gi|38970033|gb|AAH63157.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 1 [Rattus norvegicus] gi|48146205|emb|CAG33325.1| PSMC1 [Homo sapiens] gi|49522871|gb|AAH73818.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 1 [Homo sapiens] gi|61359328|gb|AAX41701.1| proteasome 26S subunit 1 [synthetic construct] gi|61359333|gb|AAX41702.1| proteasome 26S subunit 1 [synthetic construct] gi|61359339|gb|AAX41703.1| proteasome 26S subunit 1 [synthetic construct] gi|74139332|dbj|BAE40812.1| unnamed protein product [Mus musculus] gi|74177859|dbj|BAE39016.1| unnamed protein product [Mus musculus] gi|74179883|dbj|BAE36506.1| unnamed protein product [Mus musculus] gi|74223651|dbj|BAE28695.1| unnamed protein product [Mus musculus] gi|74228913|dbj|BAE21929.1| unnamed protein product [Mus musculus] gi|89272512|emb|CAJ83548.1| proteasome (prosome, macropain) 26S subunit, ATPase, 1 [Xenopus (Silurana) tropicalis] gi|119601825|gb|EAW81419.1| proteasome (prosome, macropain) 26S subunit, ATPase, 1, isoform CRA_a [Homo sapiens] gi|123981600|gb|ABM82629.1| proteasome (prosome, macropain) 26S subunit, ATPase, 1 [synthetic construct] gi|123996411|gb|ABM85807.1| proteasome (prosome, macropain) 26S subunit, ATPase, 1 [synthetic construct] gi|133778179|gb|AAI23488.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 1 [Bos taurus] gi|148686957|gb|EDL18904.1| mCG122657 [Mus musculus] gi|149025345|gb|EDL81712.1| peptidase (prosome, macropain) 26S subunit, ATPase 1 [Rattus norvegicus] gi|189055350|dbj|BAG36130.1| unnamed protein product [Homo sapiens] gi|197692323|dbj|BAG70125.1| proteasome 26S ATPase subunit 1 [Homo sapiens] gi|197692583|dbj|BAG70255.1| proteasome 26S ATPase subunit 1 [Homo sapiens] gi|208965388|dbj|BAG72708.1| proteasome (prosome, macropain) 26S subunit, ATPase, 1 [synthetic construct] gi|296482890|gb|DAA25005.1| proteasome 26S ATPase subunit 1 [Bos taurus] Length = 440 Score = 42.1 bits (98), Expect = 0.081, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 218 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 269 >gi|307701252|ref|ZP_07638274.1| ATP-dependent metallopeptidase HflB [Mobiluncus mulieris FB024-16] gi|307613646|gb|EFN92893.1| ATP-dependent metallopeptidase HflB [Mobiluncus mulieris FB024-16] Length = 765 Score = 41.7 bits (97), Expect = 0.082, Method: Composition-based stats. Identities = 35/214 (16%), Positives = 69/214 (32%), Gaps = 51/214 (23%) Query: 67 VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110 V+L GP G+GK+ LA + ++ S + + Sbjct: 223 VLLYGPPGTGKTLLAKAVAGEAGVPFFSMSGSEFVEMFVGMGASRVRDLFEQARSAAPAI 282 Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + D + L + ++ + + +L+ A P L Sbjct: 283 IFVDEIDAVGRHRGTGMGGGHDEREQTLNQLLVEMDGFDERTNVILIAATNRPDVLDPAL 342 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 L+ V + PD E ++ ++ + D L A + +R A Sbjct: 343 ------LRPGRFDRQVAVEAPDIKGREAILTVHAKNKPLSKDTDLKA-LAKRTP-GFTGA 394 Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 L + ++ AL A L+E D Sbjct: 395 -DLANVLNEAALLA--------ARHTLEEINASD 419 >gi|303244707|ref|ZP_07331038.1| AAA ATPase central domain protein [Methanothermococcus okinawensis IH1] gi|302484921|gb|EFL47854.1| AAA ATPase central domain protein [Methanothermococcus okinawensis IH1] Length = 372 Score = 41.7 bits (97), Expect = 0.082, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 52/150 (34%), Gaps = 33/150 (22%) Query: 61 SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSIL 104 W + ++ GP G+GK+ LA + ++ + A L + L Sbjct: 152 EWAPKNILFYGPPGTGKTLLARALATETDVPLYLIKATELIGEHVGDGSKQIQDLYNKAL 211 Query: 105 IDTRKPVLLEDIDLLDFNDT-------------QLFHIINSIHQYDSSLLMTARTFPVSW 151 D + ++++D + + L ++ IH D + + A P Sbjct: 212 NDRPCIIFIDELDAIALSRQYQSLRGDVSEIVNALLTELDGIHNNDGIVTIAATNNPEML 271 Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 + SR + ++ DD+ L+ + Sbjct: 272 DNAV---RSRFEEEIKFELPN-DDERLKII 297 >gi|254496577|ref|ZP_05109445.1| recombination factor protein RarA [Legionella drancourtii LLAP12] gi|254354201|gb|EET12868.1| recombination factor protein RarA [Legionella drancourtii LLAP12] Length = 432 Score = 41.7 bits (97), Expect = 0.082, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 58/169 (34%), Gaps = 24/169 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ +A+I + + A I E++ T L Sbjct: 49 MILWGPPGVGKTTIAHITAAAFECEWIALSAVFSGVKDIRAAMERAQENL--AQGKHTIL 106 Query: 127 F----HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 F H N Q +LL + A T S+ V L SR A V + Sbjct: 107 FIDEIHRFNKAQQD--ALLPYTESGLVTFIGATTENPSFEVNSA-LLSR---AQVYVLKP 160 Query: 173 PDDDFLEKVIVKMFAD--RQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 ++ L+++ K I D A ++ + V+++ Sbjct: 161 LTNEELKQLFQKAHQAVLSHISFDDAAVAIVIDYADGDARRLLNCVEQL 209 >gi|227512582|ref|ZP_03942631.1| recombination ATPase [Lactobacillus buchneri ATCC 11577] gi|227084197|gb|EEI19509.1| recombination ATPase [Lactobacillus buchneri ATCC 11577] Length = 441 Score = 41.7 bits (97), Expect = 0.082, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 10/78 (12%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 +I GP GSGK+ LA I + K+++ FS + + I + + + Sbjct: 52 PSMIFWGPPGSGKTTLAEIIAKKTKAKFVTFSAVTSGIRDIRKLMKDA----EANRNMGG 107 Query: 123 DTQLF----HIINSIHQY 136 T +F H N Q Sbjct: 108 KTIVFVDEIHRFNKAQQD 125 >gi|209695310|ref|YP_002263239.1| recombination factor protein RarA [Aliivibrio salmonicida LFI1238] gi|208009262|emb|CAQ79528.1| conserevd hypothetical protein [Aliivibrio salmonicida LFI1238] Length = 448 Score = 41.7 bits (97), Expect = 0.082, Method: Composition-based stats. Identities = 33/200 (16%), Positives = 69/200 (34%), Gaps = 40/200 (20%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKP-----------VLL 113 +IL GP G+GK+ LA + ++ + + R S + + I K + + Sbjct: 54 MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKDIRAAIDKAKENQTTGRRTILFV 113 Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++ + + F HI N + + T L SR A V K+ Sbjct: 114 DEVHRFNKSQQDAFLPHIENGTI---TFIGATTENPSFELNNA---LLSR---ARVYKLK 164 Query: 172 LPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIV------QRMERSLVFAEKLVDK 218 + + ++I + D R + + + + RM + + + + Sbjct: 165 SLEKQDIVQIIEQALTDKNRGLNDDNFVLPDDVKLQLADLVSGDARMSLNYLELLHDMAE 224 Query: 219 MDNLALSRGMGITRSLAAEV 238 ++ + L AEV Sbjct: 225 ENHE---GKKVVDLPLLAEV 241 >gi|170089231|ref|XP_001875838.1| predicted protein [Laccaria bicolor S238N-H82] gi|164649098|gb|EDR13340.1| predicted protein [Laccaria bicolor S238N-H82] Length = 405 Score = 41.7 bits (97), Expect = 0.082, Method: Composition-based stats. Identities = 26/183 (14%), Positives = 61/183 (33%), Gaps = 38/183 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + ++ GP G+GK+ LA + +++ SL + I ++ Sbjct: 185 PPKGCLMYGPPGTGKTLLARACAASTKACYLKLAGPSLVQMFIGDGAKLVRDAFALAKEK 244 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151 ++++D + + ++N + D ++ A Sbjct: 245 APAIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFGSDDRIKVIAATNRIDIL 304 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ LP++ +++ R++ I + + R Sbjct: 305 DPAL--LRSGRLD--RKIEFPLPNETARARILQ--IHSRKMAISPDVNYEELARSTDEFN 358 Query: 211 FAE 213 A+ Sbjct: 359 AAQ 361 >gi|158430364|pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4 gi|158430365|pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of Adp gi|158430366|pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of Adp gi|158430367|pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of Adp Length = 355 Score = 41.7 bits (97), Expect = 0.082, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 52/140 (37%), Gaps = 41/140 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P+ ++L GP G+GKS LA + ++ ST FS + L S + + ++ Sbjct: 83 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMAREN 142 Query: 113 ------LEDIDLLDFND------------TQLFHIINSI-HQYDSSLLMTARTFPVSWG- 152 ++ +D L T+L +N + + L++ A P Sbjct: 143 KPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDS 202 Query: 153 -----------VCLPDLCSR 161 + LPDL +R Sbjct: 203 AIRRRFERRIYIPLPDLAAR 222 >gi|92113453|ref|YP_573381.1| recombination factor protein RarA [Chromohalobacter salexigens DSM 3043] gi|91796543|gb|ABE58682.1| Recombination protein MgsA [Chromohalobacter salexigens DSM 3043] Length = 469 Score = 41.7 bits (97), Expect = 0.082, Method: Composition-based stats. Identities = 43/186 (23%), Positives = 72/186 (38%), Gaps = 36/186 (19%) Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKP------- 110 S R +IL GP G GK+ LA+I +D S + R S + + I + Sbjct: 69 ESGAVRSMILWGPPGVGKTTLADILADASGAMLERLSAVMAGVKDIRAAVERAREGQVRG 128 Query: 111 ----VLLEDIDLLDF--NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164 + L++I L+ D L H+ + L+ A T S+ V L SR Sbjct: 129 QPTLLFLDEIHRLNKSQQDALLPHV-----ESGLLTLIGATTENPSFEVNSA-LLSR--- 179 Query: 165 ATVVKISLPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLV-FAEKLV 216 A V + + + L +V+ + AD R I D+ + + RS A + + Sbjct: 180 ARVYVLRKLETEDLLRVLHQALADTERGLGKRHIEADEGVLETLA----RSASGDARRAL 235 Query: 217 DKMDNL 222 ++ Sbjct: 236 GLLETA 241 >gi|169775759|ref|XP_001822346.1| cell division control protein 48 [Aspergillus oryzae RIB40] gi|238502409|ref|XP_002382438.1| cell division control protein Cdc48 [Aspergillus flavus NRRL3357] gi|83771081|dbj|BAE61213.1| unnamed protein product [Aspergillus oryzae] gi|220691248|gb|EED47596.1| cell division control protein Cdc48 [Aspergillus flavus NRRL3357] Length = 821 Score = 41.7 bits (97), Expect = 0.082, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 49/121 (40%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 255 PPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 314 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + + ++M A P S Sbjct: 315 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSIDPA 374 Query: 155 L 155 L Sbjct: 375 L 375 >gi|296535676|ref|ZP_06897851.1| replication-associated recombination protein A [Roseomonas cervicalis ATCC 49957] gi|296264000|gb|EFH10450.1| replication-associated recombination protein A [Roseomonas cervicalis ATCC 49957] Length = 463 Score = 41.7 bits (97), Expect = 0.083, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 63/187 (33%), Gaps = 36/187 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ +A + ++ + RF+ ++ + D +K T L Sbjct: 71 LILWGPPGVGKTTIARLLAEAAG-LRFAALSAVFSGVA-DLKKAFDEARARRRAGQGTLL 128 Query: 127 F----HIINSIHQYD---------SSLLMTARTFPV-SWGVCLPDLCSRLKAATVVKISL 172 F H N Q +L+ P + + L V+ + Sbjct: 129 FVDEIHRFNRAQQDGFLPVVEDGTVTLVGATTENPSFALNGAI------LSRCQVMVLRR 182 Query: 173 PDDDFLEKVIVKMF-----------ADRQI--FIDKKLAAYIVQRMERSLVFAEKLVDKM 219 DD LE+++ + A R + + Y++ M L+ + + Sbjct: 183 LDDAALERLLARAEAEAGRALPVDEAARGVLRAMADGDGRYLLN-MAEQLLALPEGSAAL 241 Query: 220 DNLALSR 226 D LS Sbjct: 242 DPAGLSA 248 >gi|255641390|gb|ACU20972.1| unknown [Glycine max] Length = 426 Score = 41.7 bits (97), Expect = 0.083, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 45/144 (31%), Gaps = 46/144 (31%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P V+ GP G+GK+ LA ++++ + I L + ++ Sbjct: 202 PKGVLC-YGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSK 260 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQYDSS----LLMTARTF--- 147 +++D + + I+N + +D+ +LM Sbjct: 261 KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNGPDTL 320 Query: 148 ------PVSWG----VCLPDLCSR 161 P LPDL SR Sbjct: 321 DPALLRPGRLNRKVEFGLPDLESR 344 >gi|242008303|ref|XP_002424946.1| 26S protease regulatory subunit S10B, putative [Pediculus humanus corporis] gi|212508560|gb|EEB12208.1| 26S protease regulatory subunit S10B, putative [Pediculus humanus corporis] Length = 395 Score = 41.7 bits (97), Expect = 0.083, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + + ++ ++ I ++ E Sbjct: 172 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 223 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 224 ------MFNYARDHQ 232 >gi|170690290|ref|ZP_02881457.1| IstB domain protein ATP-binding protein [Burkholderia graminis C4D1M] gi|170690892|ref|ZP_02882058.1| IstB domain protein ATP-binding protein [Burkholderia graminis C4D1M] gi|170691664|ref|ZP_02882829.1| IstB domain protein ATP-binding protein [Burkholderia graminis C4D1M] gi|170692086|ref|ZP_02883250.1| IstB domain protein ATP-binding protein [Burkholderia graminis C4D1M] gi|170694060|ref|ZP_02885216.1| IstB domain protein ATP-binding protein [Burkholderia graminis C4D1M] gi|170694104|ref|ZP_02885259.1| IstB domain protein ATP-binding protein [Burkholderia graminis C4D1M] gi|170695159|ref|ZP_02886307.1| IstB domain protein ATP-binding protein [Burkholderia graminis C4D1M] gi|170696576|ref|ZP_02887698.1| IstB domain protein ATP-binding protein [Burkholderia graminis C4D1M] gi|170138529|gb|EDT06735.1| IstB domain protein ATP-binding protein [Burkholderia graminis C4D1M] gi|170140011|gb|EDT08191.1| IstB domain protein ATP-binding protein [Burkholderia graminis C4D1M] gi|170140844|gb|EDT09017.1| IstB domain protein ATP-binding protein [Burkholderia graminis C4D1M] gi|170141132|gb|EDT09304.1| IstB domain protein ATP-binding protein [Burkholderia graminis C4D1M] gi|170143370|gb|EDT11534.1| IstB domain protein ATP-binding protein [Burkholderia graminis C4D1M] gi|170143869|gb|EDT12032.1| IstB domain protein ATP-binding protein [Burkholderia graminis C4D1M] gi|170144141|gb|EDT12303.1| IstB domain protein ATP-binding protein [Burkholderia graminis C4D1M] gi|170144725|gb|EDT12886.1| IstB domain protein ATP-binding protein [Burkholderia graminis C4D1M] Length = 258 Score = 41.7 bits (97), Expect = 0.083, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 55/148 (37%), Gaps = 34/148 (22%) Query: 32 FPRCLGISRDDLLVHSAIEQAVR------LIDSWPSWPSRVVILVGPSGSGKSCLANIW- 84 FP I D A E VR IDS + ++LVG G+GK+ LA Sbjct: 65 FPAYRDIGGFDFSCSDANEALVRQLYECEFIDS-----AHNIVLVGGPGTGKTHLATAIG 119 Query: 85 -SDKSRSTRFSNIAKSLDSILIDTRKPVL---------LEDIDLLDFND----------- 123 R +++ + ++ ++ L DL+ ++ Sbjct: 120 VQALEHHRRRVRFFSTIELVNALEQEKLVGKPGQLATRLMYADLVVLDELGYLPFSQTGG 179 Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSW 151 LFH+++ +++ +S+++T W Sbjct: 180 ALLFHLLSKLYER-TSIIITTNLSFAEW 206 >gi|149195243|ref|ZP_01872332.1| Holliday junction DNA helicase B [Caminibacter mediatlanticus TB-2] gi|149134585|gb|EDM23072.1| Holliday junction DNA helicase B [Caminibacter mediatlanticus TB-2] Length = 330 Score = 41.7 bits (97), Expect = 0.083, Method: Composition-based stats. Identities = 37/204 (18%), Positives = 76/204 (37%), Gaps = 35/204 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++ GP G GK+ LANI +++ + + A L+ LE+ D+L ++ Sbjct: 54 MLFFGPPGLGKTTLANIIANEMNANIKTISAPMLEKSGDLAAILTNLEEGDILFIDEI-- 111 Query: 127 FHIINSIHQ-------YDSSLLMTARTFPVSWGVCLPD-------------------LCS 160 H + + + D L + + P + + L D L Sbjct: 112 -HRLKAAIEEVLYSAMEDFRLDIVIGSGPAAQTIKL-DVAKFTLIGATTRAGMLSNPLRD 169 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFADR-QIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 R +++ +++ L +I+K+ + + I A I +R + A +L+ ++ Sbjct: 170 RF--GMSFRLNFYNEEEL-ALIIKLASKKLNYEIKDDAAKEIAKRSRGTPRIALRLLKRI 226 Query: 220 -DNLALSRGMGITRSLAAEVLKET 242 D + I +A L E Sbjct: 227 RDFAEVENKKIIDLKIAKYGLDEL 250 >gi|123478150|ref|XP_001322239.1| proteasome endopeptidase complex [Trichomonas vaginalis G3] gi|121905081|gb|EAY10016.1| proteasome endopeptidase complex, putative [Trichomonas vaginalis G3] Length = 423 Score = 41.7 bits (97), Expect = 0.083, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA ++++ S I L I ++ E Sbjct: 198 PPKGVLLYGPPGTGKTLLARAVANRTESVFIRVIGSELVQKYIGEGARMVRE 249 >gi|169610313|ref|XP_001798575.1| hypothetical protein SNOG_08255 [Phaeosphaeria nodorum SN15] gi|111063411|gb|EAT84531.1| hypothetical protein SNOG_08255 [Phaeosphaeria nodorum SN15] Length = 461 Score = 41.7 bits (97), Expect = 0.083, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 55/160 (34%), Gaps = 38/160 (23%) Query: 70 VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113 GP G+GK+ LA + ++ +T L + I ++ + Sbjct: 248 YGPPGTGKTLLARACAAQTDATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPSIIFI 307 Query: 114 EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158 +++D + + ++N D ++ A L L Sbjct: 308 DELDAVGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRVKVLAATNRVDVLDPAL--L 365 Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 S RL ++ LP+++ +++ R++ +D+ + Sbjct: 366 RSGRLD--RKIEFPLPNEEARAQIL--RIHSRKMTVDEGV 401 >gi|21228802|ref|NP_634724.1| transposase [Methanosarcina mazei Go1] gi|20907320|gb|AAM32396.1| Transposase [Methanosarcina mazei Go1] Length = 265 Score = 41.7 bits (97), Expect = 0.083, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 22/112 (19%) Query: 67 VILVGPSGSGKSCLA---NIWSDKSR-STRFSNIAKSLDSILIDTRKPVL---------- 112 ++L+GP G GKS LA I + K+ S F+N ++ + I R+ +L Sbjct: 105 IVLLGPPGVGKSHLAIALGIEAVKAGISVHFTNTGNLIERLKIANREGILEKKIRDLMKF 164 Query: 113 ----LEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 +++I L F+D LF +I+ ++ S++L T+ WG D Sbjct: 165 KVLIIDEIGYLPFDDEGAHCLFQLISRRYEKSSTIL-TSNKSYGEWGEIFKD 215 >gi|115465954|ref|NP_001056576.1| Os06g0109400 [Oryza sativa Japonica Group] gi|55296101|dbj|BAD67691.1| putative cell survival CED-4-interacting protein MAC-1 [Oryza sativa Japonica Group] gi|55296176|dbj|BAD67894.1| putative cell survival CED-4-interacting protein MAC-1 [Oryza sativa Japonica Group] gi|113594616|dbj|BAF18490.1| Os06g0109400 [Oryza sativa Japonica Group] gi|222634830|gb|EEE64962.1| hypothetical protein OsJ_19854 [Oryza sativa Japonica Group] Length = 770 Score = 41.7 bits (97), Expect = 0.083, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 39/108 (36%), Gaps = 29/108 (26%) Query: 60 PSW----PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP----- 110 P W P ++L GP G GK+ LA+ ++++ + A + S + + Sbjct: 217 PRWLGVKPVAGLLLHGPPGCGKTTLAHAIANETGVPFYKISAPEVVSGVSGASEENIRSL 276 Query: 111 -----------VLLEDIDLLDFNDTQLFHIINSIHQYDSSL---LMTA 144 V +++ID + N + + + LMT Sbjct: 277 FKKAYRTAPSIVFIDEIDAIASKRE------NLQREMERRIVTQLMTC 318 >gi|148548551|ref|YP_001268653.1| AFG1 family ATPase [Pseudomonas putida F1] gi|148512609|gb|ABQ79469.1| AFG1-family ATPase [Pseudomonas putida F1] Length = 357 Score = 41.7 bits (97), Expect = 0.083, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 34/110 (30%), Gaps = 23/110 (20%) Query: 65 RVVILVGPSGSGKSCL----------------------ANIWSDKSRSTRFSNIAKSLDS 102 R + L G G GKS L A + R + + Sbjct: 65 RSLYLYGSVGRGKSWLLDGFFQAVPIADKLRLHFHDFFARLHQGMHRHRALDDALGATLD 124 Query: 103 ILIDTRKPVLLEDIDLLDFNDTQLFH-IINSIHQYDSSLLMTARTFPVSW 151 L+ + + ++ + D D L + N++ LL+T+ P Sbjct: 125 ELVGGCRVLCFDEFHVHDIGDAMLLTRLFNALFARGVYLLVTSNYAPEGL 174 >gi|317500629|ref|ZP_07958848.1| replicative DNA helicase [Lachnospiraceae bacterium 8_1_57FAA] gi|316897947|gb|EFV19999.1| replicative DNA helicase [Lachnospiraceae bacterium 8_1_57FAA] Length = 284 Score = 41.7 bits (97), Expect = 0.083, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 50/131 (38%), Gaps = 28/131 (21%) Query: 50 EQAVRLIDSWPSWPSRVV--ILVGPSGSGKSCLANIWSDKSR-----------STRFSNI 96 E A +++W + R + +L G G+GKS A ++ + +++ Sbjct: 110 EHAHFYVENWEAMKERNIGYLLWGGVGTGKSYFAGCIANALMEREIPVCMTNFALILNDL 169 Query: 97 AKSLDSI-----LIDTRKPVLLEDIDLLDFNDTQLFHIINSI---HQYDSSLLMTARTFP 148 A S + + + ++L+D + + L + N I ++ L++T Sbjct: 170 AASFEGRNEYISRLCSFPLLILDDFGMERGTEYGLEQVYNVIDSRYRSGRPLIVTT---- 225 Query: 149 VSWGVCLPDLC 159 + L DL Sbjct: 226 ---NLTLEDLQ 233 >gi|257388941|ref|YP_003178714.1| proteasome-activating nucleotidase [Halomicrobium mukohataei DSM 12286] gi|257171248|gb|ACV49007.1| 26S proteasome subunit P45 family [Halomicrobium mukohataei DSM 12286] Length = 404 Score = 41.7 bits (97), Expect = 0.083, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 28/64 (43%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P V+L GP G+GK+ LA ++++ +T L I ++ + +L Sbjct: 181 PPSGVLLHGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGSKLVRDLFELARNE 240 Query: 123 DTQL 126 + + Sbjct: 241 EPAV 244 >gi|14591092|ref|NP_143167.1| hypothetical protein PH1278 [Pyrococcus horikoshii OT3] gi|3257698|dbj|BAA30381.1| 363aa long hypothetical protein [Pyrococcus horikoshii OT3] Length = 363 Score = 41.7 bits (97), Expect = 0.083, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 63/158 (39%), Gaps = 17/158 (10%) Query: 50 EQAVRL-IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTR 108 QAV L I P P + ++L GP G+GKS LA+ ++ +T FS A L S Sbjct: 106 AQAVGLSIAKSPIDPPQGILLFGPPGTGKSLLASATANSLNATFFSVKASDLLSKYFGES 165 Query: 109 KPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWG-VCLPDLCSRLKAATV 167 ++ + LF + Q S++ ++ L D R+ + Sbjct: 166 SKLV-----------SALFSL---ARQLSPSVIFIDEVDSLTMKRSSLDDAARRMIGTLL 211 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 +I D KVIV + +D+ + + + R+ Sbjct: 212 AEIDGFKD-KRRKVIVLTATNTPWDLDEAMLSRLPIRI 248 >gi|298674960|ref|YP_003726710.1| AAA family ATPase [Methanohalobium evestigatum Z-7303] gi|298287948|gb|ADI73914.1| AAA family ATPase, CDC48 subfamily [Methanohalobium evestigatum Z-7303] Length = 733 Score = 41.7 bits (97), Expect = 0.084, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 58/167 (34%), Gaps = 39/167 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P + V++ GPSG+GK+ +A + ++ + S + + D Sbjct: 211 PPKGVMVYGPSGTGKTLIAKAVAYETDANFISLSGPEIMSKYYGESEEKLREIFEEAEND 270 Query: 107 TRKPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + +++ A P S Sbjct: 271 APSIIFIDEIDSIAPKRGEVSGEVEQRIVAQLLSLMDGLKSRGEVIVIAATNRPSSVDEA 330 Query: 155 LPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198 L + ++I +PD D +++ R + D + Sbjct: 331 LR------RGGRFDREIEIEIPDRDARLEILKVHT--RGMPFDNDIV 369 Score = 39.4 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 16/74 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106 P R VIL GP G+GK+ LA S +S + S I ++ Sbjct: 483 PPRGVILYGPPGTGKTMLAKAVSGESEANFISIKGPELLSKYVGESERAIRETFRKAKQA 542 Query: 107 TRKPVLLEDIDLLD 120 + +++ID + Sbjct: 543 APTVIFIDEIDSIA 556 >gi|291550085|emb|CBL26347.1| ATPase related to the helicase subunit of the Holliday junction resolvase [Ruminococcus torques L2-14] Length = 438 Score = 41.7 bits (97), Expect = 0.084, Method: Composition-based stats. Identities = 31/205 (15%), Positives = 80/205 (39%), Gaps = 43/205 (20%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS-----NIAKSLDSILIDTRKPVLLEDIDLLDF 121 +I GP G+GK+ LA + + + + K ++ ++ + + D+ + Sbjct: 55 LIFYGPPGTGKTTLAKVIAHTTSAEFKQINATVAGKKDMEEVVKEAK------DLQGMYG 108 Query: 122 NDTQLF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 T LF H N + + +L+ A T + V L SR +++ + Sbjct: 109 KKTILFIDEIHRFNKGQQDYLLPFVEDGTLILIGATTENPYFEVNGA-LISR---SSIFE 164 Query: 170 ISLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 + + +++++++ D + + I+ ++ + S A ++ ++ Sbjct: 165 LRPLEKTDIKELLLRAVNDTEKGLGSFHAVIEDDALEFLA---DVSGGDARNALNAIELG 221 Query: 223 ALSRGMG------ITRSLAAEVLKE 241 L+ IT +A+E +++ Sbjct: 222 VLTTDRSEDGQIHITLDVASECIQK 246 >gi|294875153|ref|XP_002767218.1| cell division cycle protein, putative [Perkinsus marinus ATCC 50983] gi|239868730|gb|EEQ99935.1| cell division cycle protein, putative [Perkinsus marinus ATCC 50983] Length = 295 Score = 41.7 bits (97), Expect = 0.084, Method: Composition-based stats. Identities = 11/31 (35%), Positives = 19/31 (61%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF 93 P R V+L GP G GK+ +A ++++ + F Sbjct: 240 PPRGVLLYGPPGCGKTLIARAIANETGAFFF 270 >gi|194742744|ref|XP_001953861.1| GF17023 [Drosophila ananassae] gi|190626898|gb|EDV42422.1| GF17023 [Drosophila ananassae] Length = 446 Score = 41.7 bits (97), Expect = 0.084, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 224 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 275 >gi|167854588|ref|ZP_02477369.1| hypothetical protein HPS_02389 [Haemophilus parasuis 29755] gi|219872223|ref|YP_002476598.1| recombination factor protein RarA [Haemophilus parasuis SH0165] gi|167854343|gb|EDS25576.1| hypothetical protein HPS_02389 [Haemophilus parasuis 29755] gi|219692427|gb|ACL33650.1| recombination factor protein RarA [Haemophilus parasuis SH0165] Length = 447 Score = 41.7 bits (97), Expect = 0.084, Method: Composition-based stats. Identities = 43/205 (20%), Positives = 71/205 (34%), Gaps = 39/205 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I GP G+GK+ LA I +++ + R S + + I K ++ T Sbjct: 52 MIFWGPPGTGKTTLAEIIANELDAEVERLSAVTSGIKEIREAIEKA----KLNRQSGRRT 107 Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N Q D +++ T L SR A + + Sbjct: 108 LLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNA---LLSR---ARIYIL 161 Query: 171 SLPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRME---R-SLVFAEKLVDKM 219 + K++ AD R + I + + + R SL E + D Sbjct: 162 KPLQAVDILKILQNAIADKERGLGNEKLIIQDDVLQLLADYVNGDGRFSLNCLELMCDM- 220 Query: 220 DNLALSRGMGITRSLAAEVLKETQQ 244 L +G + ++L EVL E Q Sbjct: 221 -AEQLPQGKLLDKALLTEVLGERQA 244 >gi|145259126|ref|XP_001402275.1| cell division control protein 48 [Aspergillus niger CBS 513.88] gi|134074895|emb|CAK39004.1| unnamed protein product [Aspergillus niger] Length = 820 Score = 41.7 bits (97), Expect = 0.084, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 49/121 (40%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 255 PPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 314 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + + ++M A P S Sbjct: 315 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSIDPA 374 Query: 155 L 155 L Sbjct: 375 L 375 >gi|118473106|ref|YP_890326.1| cell division protein [Mycobacterium smegmatis str. MC2 155] gi|118174393|gb|ABK75289.1| cell division protein [Mycobacterium smegmatis str. MC2 155] Length = 770 Score = 41.7 bits (97), Expect = 0.084, Method: Composition-based stats. Identities = 41/269 (15%), Positives = 81/269 (30%), Gaps = 64/269 (23%) Query: 22 KNKEEQLFFSFPRCL---GISRD----------DLLVHSAIEQAVRLIDSWPSWPSRVVI 68 K++ +QL P+ D D L + + QA+ P V+ Sbjct: 147 KSRAKQLSKDMPKTTFADVAGVDEAVEELYEIKDFLQNPSRYQALG-----AKIPKGVL- 200 Query: 69 LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP----------------VL 112 L GP G+GK+ LA + ++ F+ + + + Sbjct: 201 LYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFEQAKQNSPCIIF 260 Query: 113 LEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCLPD 157 +++ID + + L + ++ +L+ A P L Sbjct: 261 VDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGDRQGVILIAATNRPDILDPAL-- 318 Query: 158 LCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR-MERSLVFAE 213 L+ + +S PD V+ + I D L + +R + S Sbjct: 319 ----LRPGRFDRQIPVSNPDLAGRRAVLKVHSQGKPIAPDADL-DGLAKRTVGMSGADLA 373 Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKET 242 + ++ AL + L+E Sbjct: 374 NV---INEAALLTARENGTVITGPALEEA 399 >gi|16741033|gb|AAH16368.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 1 [Homo sapiens] Length = 440 Score = 41.7 bits (97), Expect = 0.084, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 218 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 269 >gi|54308357|ref|YP_129377.1| recombination factor protein RarA [Photobacterium profundum SS9] gi|46912785|emb|CAG19575.1| putative ATPase protein [Photobacterium profundum SS9] Length = 446 Score = 41.7 bits (97), Expect = 0.084, Method: Composition-based stats. Identities = 46/201 (22%), Positives = 71/201 (35%), Gaps = 42/201 (20%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G+GK+ LA + ++ + + R S + + I I K + + T Sbjct: 52 MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKDIRIAIDKA----RENKMAGRRT 107 Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N Q D ++ T L SR A V K+ Sbjct: 108 ILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKL 161 Query: 171 SLPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIV------QRMERSLVFAEKLVD 217 + + V+ + D R + + + RM SL + E+LVD Sbjct: 162 KSLETAEVLAVVEQALKDSSRGISDTNLEFVDDVKERLSELVCGDARM--SLNYLEQLVD 219 Query: 218 KMDNLALSRGMGITRSLAAEV 238 M + IT L AEV Sbjct: 220 -MAEENKAGIKYITLELLAEV 239 >gi|323138990|ref|ZP_08074050.1| ATP-dependent metalloprotease FtsH [Methylocystis sp. ATCC 49242] gi|322395744|gb|EFX98285.1| ATP-dependent metalloprotease FtsH [Methylocystis sp. ATCC 49242] Length = 639 Score = 41.7 bits (97), Expect = 0.085, Method: Composition-based stats. Identities = 33/213 (15%), Positives = 74/213 (34%), Gaps = 43/213 (20%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110 R V+LVGP G+GK+ LA + ++ FS + + Sbjct: 190 RGVLLVGPPGTGKTLLARAIAGEAGVPFFSISGSDFVEMFVGVGASRVRDMFEQAKKNAP 249 Query: 111 --VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGV 153 + +++ID + D + L + ++ + +L+ A P Sbjct: 250 CIIFVDEIDAVGRHRGAGLGGGNDEREQTLNQLLVEMDGFEANEGIILIAATNRPDVLDP 309 Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L ++ +++ PD EK++ R++ + + +V R Sbjct: 310 AL------MRPGRFDRQIQVPNPDFIGREKILKVHA--RKVPLAPDVDLKVVARGTPGFS 361 Query: 211 FAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 A L++ ++ AL R + + ++ + Sbjct: 362 GA-DLMNLVNEAALLAARRSKRIVTNQEFEDAR 393 >gi|331237454|ref|XP_003331384.1| hypothetical protein PGTG_12706 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309310374|gb|EFP86965.1| hypothetical protein PGTG_12706 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 818 Score = 41.7 bits (97), Expect = 0.085, Method: Composition-based stats. Identities = 35/203 (17%), Positives = 75/203 (36%), Gaps = 56/203 (27%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 244 PPRGILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 303 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + +++ID + QL +++ + + ++M A P S Sbjct: 304 APAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGLKARSNVVVMAATNRPNSIDPA 363 Query: 152 -----------GVCLPDLCSRLKAATVVKISLP---DDDFLEKVIVKMFADRQIFIDKKL 197 + +PD RL+ + DD L K+ AD ++ + Sbjct: 364 LRRFGRFDREVDIGIPDATGRLE-ILRIHTKNMKLGDDVDL----EKIAADTHGYVGSDV 418 Query: 198 AAYIVQRMERSLVFAEKLVDKMD 220 A+ S +++ +KMD Sbjct: 419 ASLC------SEAAMQQIREKMD 435 Score = 38.2 bits (88), Expect = 1.1, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 27/57 (47%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G+GK+ LA +++ ++ S L ++ + + + D Sbjct: 517 PSKGVLFYGPPGTGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKA 573 >gi|297687914|ref|XP_002821444.1| PREDICTED: 26S protease regulatory subunit 4-like [Pongo abelii] Length = 424 Score = 41.7 bits (97), Expect = 0.085, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 202 PPKGVILCGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVWE 253 >gi|302661469|ref|XP_003022402.1| hypothetical protein TRV_03466 [Trichophyton verrucosum HKI 0517] gi|291186345|gb|EFE41784.1| hypothetical protein TRV_03466 [Trichophyton verrucosum HKI 0517] Length = 994 Score = 41.7 bits (97), Expect = 0.085, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 13/83 (15%) Query: 29 FFSFP--RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 FP + +D+ + D+ +V++L GP G GK+ LA+I + Sbjct: 246 PIVFPGLAKPKLKKDNF----SN-------DAEERAHRKVLLLTGPPGLGKTTLAHICAK 294 Query: 87 KSRSTRFSNIAKSLDSILIDTRK 109 + A S + T + Sbjct: 295 QVGYEVLEINASDERSRTVVTGR 317 >gi|302508986|ref|XP_003016453.1| hypothetical protein ARB_04742 [Arthroderma benhamiae CBS 112371] gi|291180023|gb|EFE35808.1| hypothetical protein ARB_04742 [Arthroderma benhamiae CBS 112371] Length = 964 Score = 41.7 bits (97), Expect = 0.085, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 13/83 (15%) Query: 29 FFSFP--RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 FP + +D+ + D+ +V++L GP G GK+ LA+I + Sbjct: 246 PIVFPGLAKPKLKKDNF----SN-------DAEERAHRKVLLLTGPPGLGKTTLAHICAK 294 Query: 87 KSRSTRFSNIAKSLDSILIDTRK 109 + A S + T + Sbjct: 295 QVGYEVLEINASDERSRTVVTGR 317 >gi|257052236|ref|YP_003130069.1| proteasome-activating nucleotidase [Halorhabdus utahensis DSM 12940] gi|256690999|gb|ACV11336.1| 26S proteasome subunit P45 family [Halorhabdus utahensis DSM 12940] Length = 407 Score = 41.7 bits (97), Expect = 0.085, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 28/64 (43%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P V+L GP G+GK+ LA ++++ +T L I ++ + +L Sbjct: 184 PPSGVLLHGPPGTGKTMLAKAVANQTDATFIKMAGSELVRKFIGEGAKLVRDLFELAAER 243 Query: 123 DTQL 126 + + Sbjct: 244 EPAI 247 >gi|261349970|ref|ZP_05975387.1| replication factor C large subunit [Methanobrevibacter smithii DSM 2374] gi|288860753|gb|EFC93051.1| replication factor C large subunit [Methanobrevibacter smithii DSM 2374] Length = 492 Score = 41.7 bits (97), Expect = 0.085, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 16/83 (19%) Query: 55 LIDSWPSW-PSRVVILVGPSGSGKSCLANIWSD-------------KSRSTRFSNIAKSL 100 +D+W + P + ++LVGP G GK+ LA + +S+ S I +S Sbjct: 28 WVDNWKAGNPQKPLLLVGPPGIGKTTLAQAIAREFSEYIELNASDKRSQDVIKSTIGESS 87 Query: 101 D--SILIDTRKPVLLEDIDLLDF 121 S+ D K ++L+++D + Sbjct: 88 SSKSLFGDDYKLLILDEVDGIHG 110 >gi|148908185|gb|ABR17208.1| unknown [Picea sitchensis] Length = 336 Score = 41.7 bits (97), Expect = 0.085, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 19/32 (59%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + V+L GP G+GK+ LA + +S + + Sbjct: 117 PQKGVLLYGPPGTGKTLLAKAIAKESGAVFIN 148 >gi|242761705|ref|XP_002340232.1| cell division control protein Cdc48 [Talaromyces stipitatus ATCC 10500] gi|218723428|gb|EED22845.1| cell division control protein Cdc48 [Talaromyces stipitatus ATCC 10500] Length = 822 Score = 41.7 bits (97), Expect = 0.085, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 49/121 (40%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 255 PPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 314 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + + ++M A P S Sbjct: 315 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNIVVMAATNRPNSIDPA 374 Query: 155 L 155 L Sbjct: 375 L 375 >gi|148643237|ref|YP_001273750.1| replication factor C large subunit [Methanobrevibacter smithii ATCC 35061] gi|158513781|sp|A5UMF4|RFCL_METS3 RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|148552254|gb|ABQ87382.1| replication factor C, large subunit, RfcL [Methanobrevibacter smithii ATCC 35061] Length = 492 Score = 41.7 bits (97), Expect = 0.085, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 16/83 (19%) Query: 55 LIDSWPSW-PSRVVILVGPSGSGKSCLANIWSD-------------KSRSTRFSNIAKSL 100 +D+W + P + ++LVGP G GK+ LA + +S+ S I +S Sbjct: 28 WVDNWKAGNPQKPLLLVGPPGIGKTTLAQAIAREFSEYIELNASDKRSQDVIKSTIGESS 87 Query: 101 D--SILIDTRKPVLLEDIDLLDF 121 S+ D K ++L+++D + Sbjct: 88 SSKSLFGDDYKLLILDEVDGIHG 110 >gi|28211816|ref|NP_782760.1| Holliday junction DNA helicase RuvB [Clostridium tetani E88] gi|44888476|sp|Q891Z8|RUVB_CLOTE RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|28204258|gb|AAO36697.1| holliday junction DNA helicase ruvB [Clostridium tetani E88] Length = 345 Score = 41.7 bits (97), Expect = 0.085, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 3/70 (4%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G GK+ LANI + + + +++ L + D+L ++ Sbjct: 59 VLLYGPPGLGKTTLANIIAKEMKGNLKITSGPAIERAGDLAAILTTLNEHDVLFIDEI-- 116 Query: 127 FHIINSIHQY 136 H +N + Sbjct: 117 -HRLNRAVEE 125 >gi|219669601|ref|YP_002460036.1| recombination factor protein RarA [Desulfitobacterium hafniense DCB-2] gi|219539861|gb|ACL21600.1| AAA ATPase central domain protein [Desulfitobacterium hafniense DCB-2] Length = 437 Score = 41.7 bits (97), Expect = 0.085, Method: Composition-based stats. Identities = 36/201 (17%), Positives = 75/201 (37%), Gaps = 36/201 (17%) Query: 67 VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G+GK+ LA + ++ S R + +A + I + E + L T Sbjct: 53 LILYGPPGTGKTSLAQVIANTTSSGFVRINAVAAGVKEIREIIQTAT--EQLHLYGKK-T 109 Query: 125 QLF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +F H N + + + A T + + L SR +T+ ++ Sbjct: 110 LVFCDEVHRFNKGQQDALLPAVENGTITFIGATTENPFFELNSA-LLSR---STLFRLQP 165 Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 + + + + AD R + ID + + + + ++ ++ L+ Sbjct: 166 LTAEDIRSGLAQALADKERGLGNYSVSIDPEAWEHWLNFAN---GDLRRALNALELAVLT 222 Query: 226 RG-----MGITRSLAAEVLKE 241 IT S+A E +++ Sbjct: 223 TPPEQGVRRITLSVAEESIQQ 243 >gi|326920936|ref|XP_003206722.1| PREDICTED: 26S protease regulatory subunit 4-like, partial [Meleagris gallopavo] Length = 429 Score = 41.7 bits (97), Expect = 0.086, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 207 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 258 >gi|325971760|ref|YP_004247951.1| ATP-dependent metalloprotease FtsH [Spirochaeta sp. Buddy] gi|324026998|gb|ADY13757.1| ATP-dependent metalloprotease FtsH [Spirochaeta sp. Buddy] Length = 655 Score = 41.7 bits (97), Expect = 0.086, Method: Composition-based stats. Identities = 38/209 (18%), Positives = 70/209 (33%), Gaps = 51/209 (24%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110 R V+LVGP G+GK+ LA + +S + F + + Sbjct: 228 RGVLLVGPPGTGKTLLAKAVAGESGVSFFHTSGSDFVEMFVGMGAARVRDLFEQARKHAP 287 Query: 111 --VLLEDIDLLDFNDTQLFHIINSIHQY---------------DSSLLMTARTFPVSWGV 153 + ++++D + N + ++M A P Sbjct: 288 CILFIDELDAVGRTRGGGLGGGNDEREQTLNQILVEMDGFSTTAGVIVMAATNRPDVLDP 347 Query: 154 CLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER----- 207 L L R VV + PD E+++ R+I ++K + ++R+ R Sbjct: 348 AL--LRPGRFDRQVVVDL--PDIQEREEILKIHC--RKIKLEKDVD---LKRLARGSAGT 398 Query: 208 SLVFAEKLVDKMDNLAL--SRGMGITRSL 234 S LV + AL +R T ++ Sbjct: 399 SGADLANLV---NEAALFAARKNKSTVNM 424 >gi|321455705|gb|EFX66831.1| hypothetical protein DAPPUDRAFT_229316 [Daphnia pulex] Length = 464 Score = 41.7 bits (97), Expect = 0.086, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 29/50 (58%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S + F+ A SL S + + ++ Sbjct: 222 PARGLLLFGPPGNGKTLLARAVASESSAKFFNISASSLTSKYVGEGEKLV 271 >gi|296284469|ref|ZP_06862467.1| recombination factor protein RarA [Citromicrobium bathyomarinum JL354] Length = 440 Score = 41.7 bits (97), Expect = 0.086, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 6/75 (8%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G+GK+ +A + +D R++ ++ + + E T L Sbjct: 63 MILWGPPGTGKTTIARLLADSVG-MRYAAVSAVFSGVADLKKAFAEAETA-AKAGQKTLL 120 Query: 127 F----HIINSIHQYD 137 F H N Q Sbjct: 121 FVDEIHRFNRAQQDG 135 >gi|257485416|ref|ZP_05639457.1| recombination factor protein RarA [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 228 Score = 41.7 bits (97), Expect = 0.086, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 51/160 (31%), Gaps = 27/160 (16%) Query: 57 DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 ++ +I GP G GK+ LA + + S + + A I V + Sbjct: 40 EALEQGALHSMIFWGPPGVGKTTLARLLAKVSDAHFETVSAVLAGVKEIRQAVEVAKQQA 99 Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162 T LF H N Q D +L+ T L SR Sbjct: 100 GQYGKR-TILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154 Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKK 196 A V + D+ L K++ + + RQ+ + + Sbjct: 155 --ARVYVLKSLDEAALRKLVHRALTEERGLGKRQLTLSDE 192 >gi|224047636|ref|XP_002192150.1| PREDICTED: spastin isoform 1 [Taeniopygia guttata] Length = 612 Score = 41.7 bits (97), Expect = 0.086, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 30/50 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S +T F+ A SL S + + ++ Sbjct: 370 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 419 >gi|255568008|ref|XP_002524981.1| Vacuolar sorting protein 4b, putative [Ricinus communis] gi|223535725|gb|EEF37388.1| Vacuolar sorting protein 4b, putative [Ricinus communis] Length = 428 Score = 41.7 bits (97), Expect = 0.086, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 31/124 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P R +L GP G+GKS LA + ++ ST FS + L Sbjct: 166 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFRLARDS 225 Query: 107 TRKPVLLEDIDLLD-----FNDTQLFHIINSIHQYDSSLLM----TARTFPVSWGVCLPD 157 + +++ID L N+++ + + + LL+ R F + LPD Sbjct: 226 APSIIFIDEIDSLCGQRGEGNESE------ASRRIKTELLVQMQAIRRRFDKRIYIPLPD 279 Query: 158 LCSR 161 L +R Sbjct: 280 LKAR 283 >gi|134094254|ref|YP_001099329.1| recombination factor protein RarA [Herminiimonas arsenicoxydans] gi|133738157|emb|CAL61202.1| ATPase, AAA family protein [Herminiimonas arsenicoxydans] Length = 430 Score = 41.7 bits (97), Expect = 0.086, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 61/178 (34%), Gaps = 23/178 (12%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIA--------------KSLDSILIDTRKPVL 112 +IL GP G GK+ LA + +D + + A L +D R + Sbjct: 43 MILWGPPGVGKTTLARLMADSFNADFIALSAVLSGVKDIRDAVERAQLSRGAMDRRTILF 102 Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 ++++ + + F + + A T S+ V L SR A V + Sbjct: 103 VDEVHRFNKSQQDAFLPH---VESGLFTFIGATTENPSFEVNGA-LLSR---AAVYVLKS 155 Query: 173 PDDDFLEKVIVKMFADR--QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228 D++ L ++ + A+ I A ++ + ++ + A + Sbjct: 156 LDENDLAAMLDRACANELGDISFTPDAKATLIASADGDGRKLLNNLEIVARAAQANQR 213 >gi|1066065|gb|AAB34134.1| P26s4 [Drosophila melanogaster] Length = 439 Score = 41.7 bits (97), Expect = 0.086, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 217 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 268 >gi|47222682|emb|CAG00116.1| unnamed protein product [Tetraodon nigroviridis] Length = 440 Score = 41.7 bits (97), Expect = 0.086, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 218 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 269 >gi|317009066|gb|ADU79646.1| recombination factor protein RarA [Helicobacter pylori India7] Length = 391 Score = 41.7 bits (97), Expect = 0.086, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 69/184 (37%), Gaps = 21/184 (11%) Query: 65 RVVILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILI--------DTRKPVLLE 114 GP G GK+ LA I + + F+ L+ + + + V ++ Sbjct: 38 PHAFFYGPPGVGKTSLAQIIARMLERPFLLFNATDFKLEDLRLKLKNYQNTLLKPVVFID 97 Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 + L+ + I + + +L++ A T ++ + + SR + + +++ + Sbjct: 98 ETHRLNKTQQEFLLPI---MEKNHALILGASTQDPNYSLSHA-IRSR---SFIFELTPLN 150 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234 L+K+ K + I+ Y++ S A L++ +D L+ IT Sbjct: 151 KSDLDKLCAKALTLLKKQIESDAKTYLLNN---SAGDARALLNLLD-LSAKIEDPITLKT 206 Query: 235 AAEV 238 + Sbjct: 207 LKSL 210 >gi|331232967|ref|XP_003329145.1| 26S proteasome regulatory subunit 6A-B [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309308135|gb|EFP84726.1| 26S proteasome regulatory subunit 6A-B [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 460 Score = 41.7 bits (97), Expect = 0.086, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 28/57 (49%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P + V++ GP G+GK+ LA + ++++ SL + I ++ + +L Sbjct: 240 PPKGVLMYGPPGTGKTLLARACAAQTKACYMKLAGPSLVQMFIGDGAKLVRDAFELA 296 >gi|260177252|gb|ACX33971.1| IstB ATP binding domain-containing protein [uncultured bacterium RM44] Length = 274 Score = 41.7 bits (97), Expect = 0.086, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 56/146 (38%), Gaps = 27/146 (18%) Query: 32 FPRCLGISRDDLLVHSAIEQAVRLIDSWPSW----PSRVVILVGPSGSGKSCLA---NIW 84 FP + D ++ RLID + R V+ +GP G GK+ LA + Sbjct: 69 FPYKKRLEDFDFAAQPGLD--RRLIDELATGRFLAEGRNVVFLGPPGVGKTHLAISLGVI 126 Query: 85 SDKSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFNDTQ---L 126 + + + A + L + ++++++ L + TQ L Sbjct: 127 TAQLGHRTYFTTAIDMARKLTQAMEQNRLHRMLNALTQPKLLIIDEVGYLTLDQTQASLL 186 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWG 152 F ++ ++ + ++++T+ WG Sbjct: 187 FQVLCKRYEREQAVILTSNKAFSDWG 212 >gi|301122253|ref|XP_002908853.1| 26S protease regulatory subunit S10B [Phytophthora infestans T30-4] gi|262099615|gb|EEY57667.1| 26S protease regulatory subunit S10B [Phytophthora infestans T30-4] Length = 394 Score = 41.7 bits (97), Expect = 0.086, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + +T +A ++ I V+ E Sbjct: 171 PPKGVLLYGPPGTGKTLLARALACNINATFLKVVASAIVDKYIGESARVIRE 222 >gi|255934450|ref|XP_002558404.1| Pc12g16060 [Penicillium chrysogenum Wisconsin 54-1255] gi|211583023|emb|CAP81233.1| Pc12g16060 [Penicillium chrysogenum Wisconsin 54-1255] Length = 433 Score = 41.7 bits (97), Expect = 0.086, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 14/80 (17%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + ++L GP G+GKS LA + ++ ST FS + L S + + ++ Sbjct: 163 PWKGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESERLV---------- 212 Query: 123 DTQLFHIINSIHQYDSSLLM 142 QLF N + +++ Sbjct: 213 -KQLF---NMARENKPAIIF 228 >gi|198418062|ref|XP_002127866.1| PREDICTED: similar to AGAP003215-PA [Ciona intestinalis] Length = 443 Score = 41.7 bits (97), Expect = 0.086, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 221 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 272 >gi|169334953|ref|ZP_02862146.1| hypothetical protein ANASTE_01359 [Anaerofustis stercorihominis DSM 17244] gi|169257691|gb|EDS71657.1| hypothetical protein ANASTE_01359 [Anaerofustis stercorihominis DSM 17244] Length = 604 Score = 41.7 bits (97), Expect = 0.086, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 44/140 (31%), Gaps = 45/140 (32%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 +LVGP G+GK+ LA + ++ FS + + Sbjct: 201 ALLVGPPGTGKTLLAKAVAGEANVPFFSISGSEFVEMFVGMGAAKVRDLFKQANEKAPCI 260 Query: 111 VLLEDIDL---------LDFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW---- 151 V +++ID + ND QL ++ +++ A P S Sbjct: 261 VFIDEIDTIGKKRGNANIGGNDEREQTLNQLLTEMDGFDSSKGVIILAASNRPDSLDPAL 320 Query: 152 ----------GVCLPDLCSR 161 V LPDL R Sbjct: 321 LRPGRFDRRIPVELPDLKGR 340 >gi|146185105|ref|XP_001030952.2| ATP-dependent metalloprotease FtsH family protein [Tetrahymena thermophila] gi|146142708|gb|EAR83289.2| ATP-dependent metalloprotease FtsH family protein [Tetrahymena thermophila SB210] Length = 741 Score = 41.7 bits (97), Expect = 0.086, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 16/76 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 ++LVGP G+GK+ LA + ++ + + D + + Sbjct: 343 ILLVGPPGTGKTLLARALAGEAGCSFYYKSGSEFDEMFVGVGASRVRELFKKARQTAPSI 402 Query: 111 VLLEDIDLLDFNDTQL 126 + +++ID + + L Sbjct: 403 IFIDEIDSVCGKRSAL 418 >gi|115378704|ref|ZP_01465852.1| ATPase [Stigmatella aurantiaca DW4/3-1] gi|115364290|gb|EAU63377.1| ATPase [Stigmatella aurantiaca DW4/3-1] Length = 408 Score = 41.7 bits (97), Expect = 0.086, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 3/74 (4%) Query: 35 CLGISRDDLLVH-SAIEQAVRLIDS--WPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91 +SR+DLL+ S + L+D SR + L GP G+GK+ LA S Sbjct: 104 NPVVSREDLLMGLSHLTVTEELLDKLGPAVNSSRSLFLYGPPGNGKTSLAEAISRMFGGE 163 Query: 92 RFSNIAKSLDSILI 105 F +D+ +I Sbjct: 164 AFVPYCLEIDNQII 177 >gi|115384726|ref|XP_001208910.1| vacuolar protein sorting-associated protein VPS4 [Aspergillus terreus NIH2624] gi|114196602|gb|EAU38302.1| vacuolar protein sorting-associated protein VPS4 [Aspergillus terreus NIH2624] Length = 434 Score = 41.7 bits (97), Expect = 0.086, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 14/80 (17%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + ++L GP G+GKS LA + ++ ST FS + L S + + ++ Sbjct: 164 PWKGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESERLV---------- 213 Query: 123 DTQLFHIINSIHQYDSSLLM 142 QLF N + +++ Sbjct: 214 -KQLF---NMARENKPAIIF 229 >gi|291229298|ref|XP_002734612.1| PREDICTED: protease (prosome, macropain) 26S subunit, ATPase 1-like, partial [Saccoglossus kowalevskii] Length = 227 Score = 41.7 bits (97), Expect = 0.087, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 49 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 100 >gi|195430960|ref|XP_002063516.1| GK21952 [Drosophila willistoni] gi|194159601|gb|EDW74502.1| GK21952 [Drosophila willistoni] Length = 801 Score = 41.7 bits (97), Expect = 0.087, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 78/201 (38%), Gaps = 52/201 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 234 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 293 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148 + + +++ID + QL +++ + + ++M A P Sbjct: 294 SPAIIFIDEIDAIAPKRDKTHGEVERRIVSQLLTLMDGMKKSSHLIVMAATNRPNSIDPA 353 Query: 149 --------VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV-IVKMFADRQIFIDKKLAA 199 + +PD RL+ V++I + E V + ++ A+ + LA+ Sbjct: 354 LRRFGRFDREIDIGIPDATGRLE---VLRIHTKNMKLHEDVDLEQIAAETHGHVGADLAS 410 Query: 200 YIVQRMERSLVFAEKLVDKMD 220 S +++ +KMD Sbjct: 411 LC------SEAALQQIREKMD 425 Score = 40.5 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 507 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKA 563 >gi|121717057|ref|XP_001275994.1| cell division control protein Cdc48 [Aspergillus clavatus NRRL 1] gi|119404151|gb|EAW14568.1| cell division control protein Cdc48 [Aspergillus clavatus NRRL 1] Length = 819 Score = 41.7 bits (97), Expect = 0.087, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 49/121 (40%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 255 PPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 314 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + + ++M A P S Sbjct: 315 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSIDPA 374 Query: 155 L 155 L Sbjct: 375 L 375 Score = 37.4 bits (86), Expect = 1.8, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 60/175 (34%), Gaps = 41/175 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 PSR V+ GP G+GK+ LA +++ + SNI D Sbjct: 529 PSRGVLFYGPPGTGKTMLAKAVANECAANFISVKGPELLSMWFGESESNIRDIFDKARAA 588 Query: 107 TRKPVLLEDIDLLDFND---------------TQLFHIINSIHQYDSSLLMTARTFPVSW 151 V L+++D + + QL ++ + + ++ A P Sbjct: 589 APCVVFLDELDSIAKSRGGSVGDAGGASDRVVNQLLTEMDGMTSKKNVFVIGATNRPEQL 648 Query: 152 GVCL--PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQ 203 L P RL T+V + LPD E ++ R+ + + +I Sbjct: 649 DAALVRP---GRLD--TLVYVPLPDQASRESIL--RAQLRKTPVAPDVDIPFIAS 696 >gi|89895174|ref|YP_518661.1| recombination factor protein RarA [Desulfitobacterium hafniense Y51] gi|89334622|dbj|BAE84217.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 440 Score = 41.7 bits (97), Expect = 0.087, Method: Composition-based stats. Identities = 36/201 (17%), Positives = 75/201 (37%), Gaps = 36/201 (17%) Query: 67 VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G+GK+ LA + ++ S R + +A + I + E + L T Sbjct: 56 LILYGPPGTGKTSLAQVIANTTSSGFVRINAVAAGVKEIREIIQTAT--EQLHLYGKK-T 112 Query: 125 QLF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +F H N + + + A T + + L SR +T+ ++ Sbjct: 113 LVFCDEVHRFNKGQQDALLPAVENGTITFIGATTENPFFELNSA-LLSR---STLFRLQP 168 Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 + + + + AD R + ID + + + + ++ ++ L+ Sbjct: 169 LTAEDIRSGLAQALADKERGLGNYSVSIDPEAWEHWLNFAN---GDLRRALNALELAVLT 225 Query: 226 RG-----MGITRSLAAEVLKE 241 IT S+A E +++ Sbjct: 226 TPPEQGVRRITLSVAEESIQQ 246 >gi|162606548|ref|XP_001713304.1| 26S protease regulatory SU 6A [Guillardia theta] gi|12580770|emb|CAC27088.1| 26S protease regulatory SU 6A [Guillardia theta] Length = 397 Score = 41.7 bits (97), Expect = 0.087, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 23/48 (47%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 V+L GP G GK+ LA + ++ + F +L + I ++ E Sbjct: 181 VLLYGPPGMGKTLLARACASQTNAKFFKIGGPNLVQMYIGEGASLVRE 228 >gi|87119779|ref|ZP_01075676.1| PhoH family protein [Marinomonas sp. MED121] gi|86165255|gb|EAQ66523.1| PhoH family protein [Marinomonas sp. MED121] Length = 463 Score = 41.7 bits (97), Expect = 0.087, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 11/101 (10%) Query: 28 LFFSFPRCLGISRDDLLVHSAI---EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 R + + ++ A L+ S ++I+ GP+GSGK+ LA + Sbjct: 236 YLLDLNRASLMHQSFWGINPRNLEQAMAFYLLRHE---NSDLMIMTGPAGSGKTLLALAY 292 Query: 85 SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125 + + S K I++ P + EDI L + + Sbjct: 293 -----ALQVSMEEKRFSKIIVARSTPPMAEDIGFLPGTEEE 328 >gi|332653921|ref|ZP_08419665.1| putative phage replication protein [Ruminococcaceae bacterium D16] gi|332517007|gb|EGJ46612.1| putative phage replication protein [Ruminococcaceae bacterium D16] Length = 314 Score = 41.7 bits (97), Expect = 0.088, Method: Composition-based stats. Identities = 13/91 (14%), Positives = 35/91 (38%), Gaps = 13/91 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 + + GP G+GK+ LA ++ + I ++ +L ++ +++ + Sbjct: 168 LFIAGPPGTGKTHLAAAIANHLIAQGKPVICMTMIDLLERIKRT-----YSATGGSESDV 222 Query: 127 FHIINSIHQYDSSLLM---TARTFPVSWGVC 154 + ++ LL+ + P W + Sbjct: 223 LKLYKTV-----PLLVIDDIGKEPPTEWAIS 248 >gi|326915457|ref|XP_003204034.1| PREDICTED: spastin-like [Meleagris gallopavo] Length = 598 Score = 41.7 bits (97), Expect = 0.088, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 30/50 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S +T F+ A SL S + + ++ Sbjct: 356 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 405 >gi|303236721|ref|ZP_07323300.1| ATP-dependent metallopeptidase HflB [Prevotella disiens FB035-09AN] gi|302482889|gb|EFL45905.1| ATP-dependent metallopeptidase HflB [Prevotella disiens FB035-09AN] Length = 692 Score = 41.7 bits (97), Expect = 0.088, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 52/167 (31%), Gaps = 55/167 (32%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 +LVGP G+GK+ LA + ++ + FS + + Sbjct: 232 ALLVGPPGTGKTLLAKAVAGEAGAPFFSMSGSDFVEMFVGVGASRVRDAFRQAKEKAPSI 291 Query: 111 VLLEDIDLLDF-----------NDTQ--------------------LFHIINSIHQYDSS 139 + +++ID + ++ + + N + D + Sbjct: 292 IFIDEIDAVGRARSKNPSMGGNDERENTLNALLTEMDGFGTNSGVIVLAATNRVDMLDKA 351 Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISL------PDDDFLEK 180 LL R V LPDL R KA V + D D L + Sbjct: 352 LLRAGRFD-RQIHVDLPDLPER-KAIFQVHLRPLKLDNNLDIDLLAR 396 >gi|262039464|ref|ZP_06012768.1| holliday junction DNA helicase RuvB [Leptotrichia goodfellowii F0264] gi|261746531|gb|EEY34066.1| holliday junction DNA helicase RuvB [Leptotrichia goodfellowii F0264] Length = 353 Score = 41.7 bits (97), Expect = 0.088, Method: Composition-based stats. Identities = 32/189 (16%), Positives = 65/189 (34%), Gaps = 30/189 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G GK+ LA + + + L+ LE+ D+L ++ Sbjct: 56 ILLYGPPGLGKTTLAGVIATEMGVNLKITTGPVLEKAGDLAAILTSLEENDILFIDEI-- 113 Query: 127 FHIINS--------IHQYDSSLLMTARTFPVS-WGVCLPD----------------LCSR 161 H +N+ + ++ + + LP L R Sbjct: 114 -HRLNTSVEEILYPAMEDGELDILIGKGPSARSIRIELPKFTLIGATTKAGQLSTPLRDR 172 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 ++ ++ L+++I + Q+ D+ I +R + A +L + + Sbjct: 173 FGVTHRMEYYKLEE--LKEIIRRGANIFQVSYDEDGITEIAKRSRGTPRIANRLFKRARD 230 Query: 222 LALSRGMGI 230 AL G GI Sbjct: 231 FALVEGKGI 239 >gi|151941136|gb|EDN59514.1| ribosome export [Saccharomyces cerevisiae YJM789] Length = 837 Score = 41.7 bits (97), Expect = 0.088, Method: Composition-based stats. Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P V+ L GP G GK+ LA +++SR+ S Sbjct: 567 PGGVL-LWGPPGCGKTLLAKAVANESRANFIS 597 >gi|119601826|gb|EAW81420.1| proteasome (prosome, macropain) 26S subunit, ATPase, 1, isoform CRA_b [Homo sapiens] Length = 397 Score = 41.7 bits (97), Expect = 0.088, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 175 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 226 >gi|16518974|gb|AAL25088.1|AF426837_1 Tobacco mosaic virus helicase domain-binding protein [Nicotiana tabacum] Length = 537 Score = 41.7 bits (97), Expect = 0.088, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 30/50 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S +T F+ A SL S + + ++ Sbjct: 298 PARGLLLFGPPGTGKTMLAKAVASESEATFFNVSASSLTSKWVGEGEKLV 347 >gi|85717334|ref|ZP_01048287.1| putative transposase [Nitrobacter sp. Nb-311A] gi|85695873|gb|EAQ33778.1| putative transposase [Nitrobacter sp. Nb-311A] Length = 287 Score = 41.7 bits (97), Expect = 0.088, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 22/110 (20%) Query: 64 SRVVILVGPSGSGKSCLANIWS-------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 R V+LVG +G+GK+ LA + + R ++ L+ + R+ L E + Sbjct: 98 QRNVVLVGGTGTGKTHLAIAIARSCIRSGARGRFYNVVDLVNRLEIETRNGRQGRLAEHL 157 Query: 117 ---DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 D + ++ LFH+++ +++ +S+++T W Sbjct: 158 TRMDFIVLDELGYLPFAQSGGQLLFHLVSRLYER-ASVIVTTNLAFGEWP 206 >gi|103487637|ref|YP_617198.1| recombination factor protein RarA [Sphingopyxis alaskensis RB2256] gi|98977714|gb|ABF53865.1| Recombination protein MgsA [Sphingopyxis alaskensis RB2256] Length = 439 Score = 41.7 bits (97), Expect = 0.088, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 65/169 (38%), Gaps = 24/169 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G+GK+ +A + ++ + RF+ ++ + + E + T L Sbjct: 61 IILWGPPGTGKTTIARLLAEAVK-MRFAALSAVFSGVADLRQAFADAEKM-AATGKRTLL 118 Query: 127 F----HIINSIHQYD-------SSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172 F H N Q ++++ T + L SR A V+ ++ Sbjct: 119 FVDEIHRFNRAQQDGFLPYVERGTVVLVGATTENPSFALNAA---LLSR---AQVLVLNR 172 Query: 173 PDDDFLEKVIVKMFAD--RQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 D LE +I + A+ R + + + A +V + F V+ + Sbjct: 173 LGDAALETLIDRAEAETGRALPVTTEARAALVASADGDGRFLLNQVETL 221 >gi|325982300|ref|YP_004294702.1| IstB domain-containing protein ATP-binding protein [Nitrosomonas sp. AL212] gi|325531819|gb|ADZ26540.1| IstB domain protein ATP-binding protein [Nitrosomonas sp. AL212] Length = 767 Score = 41.7 bits (97), Expect = 0.088, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 50/108 (46%), Gaps = 23/108 (21%) Query: 67 VILVGPSGSGKSCLA--------NIWSDKSRSTRFSNIAKSLD-----------SILIDT 107 ++LVG +G+GK+ LA + K R ++A SL+ ++ + Sbjct: 600 LVLVGGTGTGKTHLAIAIGTSGIQHHNKKVRFFSAIDLANSLEQEKSTGKQGRLALRLLQ 659 Query: 108 RKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWG 152 V+L+++ L F+ LFH+++ +++ +S+++T W Sbjct: 660 IDLVILDELGYLPFSQAGGALLFHLLSRLYER-TSVIITTNLAFAEWS 706 >gi|321265163|ref|XP_003197298.1| 26S protease regulatory subunit 6A [Cryptococcus gattii WM276] gi|317463777|gb|ADV25511.1| 26S protease regulatory subunit 6A, putative [Cryptococcus gattii WM276] Length = 468 Score = 41.7 bits (97), Expect = 0.088, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P + ++ GP G+GK+ LA + ++ + +L + + ++ + +L Sbjct: 249 PPKGCLMYGPPGTGKTLLARACAAQTNACYLKLAGPALVQMYLGDGAKLVRDAFELA 305 >gi|264677024|ref|YP_003276930.1| transporter ATM1 precursor [Comamonas testosteroni CNB-2] gi|262207536|gb|ACY31634.1| transporter ATM1 precursor [Comamonas testosteroni CNB-2] Length = 446 Score = 41.7 bits (97), Expect = 0.088, Method: Composition-based stats. Identities = 41/197 (20%), Positives = 80/197 (40%), Gaps = 30/197 (15%) Query: 68 ILVGPSGSGKSCLANIWSDKSRSTRFS---------------NIAKSLDSILIDTRKPVL 112 IL GP G GK+ +A + +D + S A++ S L+ R V Sbjct: 55 ILWGPPGVGKTTIARLMADAFDAQFISISAVLGGVKDIREAVEQAQAAQSGLLQQRTIVF 114 Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 ++++ + F + + A T S+ V L SR A V++ Sbjct: 115 VDEVHRFNKGQQDAFLPH---VESGLFTFIGATTENPSFEVNSA-LLSR-AAVYVLQSLT 169 Query: 173 PDDDFLEKVIVKMFADRQI-FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG-- 229 PDD L++++ K A + I I+ + ++ + A +L++ ++ L+++ Sbjct: 170 PDD--LKQIVAKAQAIQAIPAIEDEALERLIAYAD---GDARRLLNTLETLSITAEQAGV 224 Query: 230 --ITRSLAAEVLKETQQ 244 IT + +VL E + Sbjct: 225 QSITDAWLLKVLGERMR 241 >gi|260944346|ref|XP_002616471.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720] gi|238850120|gb|EEQ39584.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720] Length = 427 Score = 41.7 bits (97), Expect = 0.088, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 52/148 (35%), Gaps = 40/148 (27%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID--------------TR 108 P + V+L GP G+GK+ LA + + + A ++ I Sbjct: 204 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFSYAKEH 263 Query: 109 KPVLL--EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSW 151 +P ++ ++ID + L ++N + ++ A P + Sbjct: 264 EPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLGQTKVIMATNRPDTL 323 Query: 152 GVCLPDLCSRLKAATV---VKISLPDDD 176 L L+A + ++I LP++ Sbjct: 324 DPAL------LRAGRLDRKIEIGLPNEA 345 >gi|194400003|gb|ACF60960.1| neuronal spastin [Gallus gallus] Length = 613 Score = 41.7 bits (97), Expect = 0.088, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 30/50 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S +T F+ A SL S + + ++ Sbjct: 371 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 420 >gi|241589554|ref|YP_002979579.1| IstB domain protein ATP-binding protein [Ralstonia pickettii 12D] gi|241662646|ref|YP_002981006.1| IstB domain-containing protein ATP-binding protein [Ralstonia pickettii 12D] gi|240864673|gb|ACS62334.1| IstB domain protein ATP-binding protein [Ralstonia pickettii 12D] gi|240868266|gb|ACS65925.1| IstB domain protein ATP-binding protein [Ralstonia pickettii 12D] Length = 261 Score = 41.7 bits (97), Expect = 0.088, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 59/144 (40%), Gaps = 24/144 (16%) Query: 32 FPRCLGISRDDLLVHSAIEQAVRLIDS-WPSWPSRVVILVGPSGSGKSCLA-----NIWS 85 FP ++ D A E VR + + ++LVG G+GK+ L Sbjct: 65 FPAYRDLTGFDFSCSEANEALVRQLHRCEFLESAHNIVLVGGPGTGKTHLGTAIGVQAVE 124 Query: 86 DKSRSTRFSNIAKSLDSILIDT--------------RKPVLLEDIDLLDFNDTQ---LFH 128 R RF + + ++++ ++ V+L+++ L F+ T LFH Sbjct: 125 HHHRRVRFFSTVELVNALELEKVSGKPGHLATRLMYADLVILDELGYLPFSQTGGALLFH 184 Query: 129 IINSIHQYDSSLLMTARTFPVSWG 152 +I+ +++ +SL++T W Sbjct: 185 LISKLYER-TSLVITTNLSFGEWS 207 >gi|50307971|ref|XP_453984.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49643119|emb|CAG99071.1| KLLA0E00837p [Kluyveromyces lactis] Length = 814 Score = 41.7 bits (97), Expect = 0.088, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 14/70 (20%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G GK+ LA +++SR+ S L + + ++ + Sbjct: 551 VLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKY--------------VGESERAI 596 Query: 127 FHIINSIHQY 136 + N Sbjct: 597 RQVFNRARAS 606 >gi|83645244|ref|YP_433679.1| recombination factor protein RarA [Hahella chejuensis KCTC 2396] gi|83633287|gb|ABC29254.1| ATPase related to the helicase subunit of the Holliday junction resolvase [Hahella chejuensis KCTC 2396] Length = 448 Score = 41.7 bits (97), Expect = 0.088, Method: Composition-based stats. Identities = 36/196 (18%), Positives = 73/196 (37%), Gaps = 29/196 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKP-----------VLL 113 VI GP G GK+ LA + + + + S + + I +++ V + Sbjct: 57 VIFWGPPGVGKTSLARLVAGYTGAEFITLSAVQSGVKEIREVSQRARANSQSGRKTIVFV 116 Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 +++ + + F + + + + A T S+ + L SR A V + Sbjct: 117 DEVHRFNKSQQDAFLPY---VEEGAFVFIGATTENPSFELNNA-LLSR---ARVYPLKPL 169 Query: 174 DDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL-- 224 D L ++ + +D D L I + A +++ M +LA Sbjct: 170 TIDDLTALLQRALSDAENGLGQTSWSYDADLLRMIAEAANGDARQALNILETMSDLADPG 229 Query: 225 SRGMGITRSLAAEVLK 240 +G ++R L A V++ Sbjct: 230 EQGGILSRELLASVMQ 245 >gi|87125173|ref|ZP_01081020.1| putative transposase [Synechococcus sp. RS9917] gi|86167493|gb|EAQ68753.1| putative transposase [Synechococcus sp. RS9917] Length = 173 Score = 41.7 bits (97), Expect = 0.088, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 22/111 (19%) Query: 67 VILVGPSGSGKSCL--------------ANIWSDKSRSTRFSNIAKSLDSILI----DTR 108 ++L GPSG GK+ L + + + D I D Sbjct: 20 LLLFGPSGVGKTHLAIAITMAMAAQDQACRFFPATALVQLLQKAKAAYDLPAILQKLDRY 79 Query: 109 KPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156 ++++DI + ++ + LF +I SLL+T+ W P Sbjct: 80 SLLVIDDISYVRRSELETSVLFELICH-RYERRSLLVTSNQPFREWDDIFP 129 >gi|331697349|ref|YP_004333588.1| AAA ATPase central domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326952038|gb|AEA25735.1| AAA ATPase central domain protein [Pseudonocardia dioxanivorans CB1190] Length = 456 Score = 41.7 bits (97), Expect = 0.089, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 72/176 (40%), Gaps = 27/176 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL---LDFND 123 V+L GP G+GK+ LA + + +R +L + + + R ++ED D Sbjct: 67 VLLYGPPGTGKTTLARLMARSGGGSRHFVALSALSAGVKELRA--VIEDARRRLDRDGRS 124 Query: 124 TQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 T LF H + + LL+ A T S+ V P L SR + ++++ Sbjct: 125 TVLFIDEVHRFSKTQQDALLGAVEDRLVLLVAATTENPSFSVVSP-LLSR---SLILQLR 180 Query: 172 LPDDDFLEKVIVKMFAD-RQIFIDKKLAA---YIVQRMERSLVFAEKLVDKMDNLA 223 + D L ++ + D R + +LA + R+ + A + + ++ A Sbjct: 181 SLEPDELRALLRRAVVDGRGLGGSVELADDGEDALVRL--AAGDARRALTALEAAA 234 >gi|291406631|ref|XP_002719731.1| PREDICTED: protease (prosome, macropain) 26S subunit, ATPase 1-like [Oryctolagus cuniculus] Length = 511 Score = 41.7 bits (97), Expect = 0.089, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 289 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 340 >gi|291238456|ref|XP_002739147.1| PREDICTED: TER94-like [Saccoglossus kowalevskii] Length = 1200 Score = 41.7 bits (97), Expect = 0.089, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 22/42 (52%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL 104 P R ++L GP G GK+ LA +++ R+ S L ++ Sbjct: 916 PCRGMLLYGPPGCGKTLLAKAVANECRANFLSVGGPELMAMP 957 >gi|317128226|ref|YP_004094508.1| ATPase AAA [Bacillus cellulosilyticus DSM 2522] gi|315473174|gb|ADU29777.1| AAA ATPase central domain protein [Bacillus cellulosilyticus DSM 2522] Length = 442 Score = 41.7 bits (97), Expect = 0.089, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 68/183 (37%), Gaps = 37/183 (20%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I GP G+GK+ LA + ++ + + + + + + + + + L ++ Sbjct: 53 MIFHGPPGTGKTTLAKVIANSTSAHFEQLNAVIAGIKDVREVVSRA-----KERLKYDQE 107 Query: 125 Q--LF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDL-CSRLKAATVVK 169 + LF H N + + +L+ A T + V L SRL + Sbjct: 108 KTVLFIDEIHRFNKGQQDALLPFVEDGTVILIGATTENPMFEVNPALLSRSRL-----FR 162 Query: 170 ISLPDDDFLEKVIVKMF--ADRQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 + +D +++VI DR I I + ++V A ++ ++ Sbjct: 163 LQSLTNDDIKQVIHAAINDKDRGFGEYDITIASEALDHLVNVAN---GDARTALNALELA 219 Query: 223 ALS 225 L+ Sbjct: 220 ILT 222 >gi|256271958|gb|EEU06977.1| Rix7p [Saccharomyces cerevisiae JAY291] Length = 837 Score = 41.7 bits (97), Expect = 0.089, Method: Composition-based stats. Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P V+ L GP G GK+ LA +++SR+ S Sbjct: 567 PGGVL-LWGPPGCGKTLLAKAVANESRANFIS 597 >gi|195028018|ref|XP_001986879.1| GH20288 [Drosophila grimshawi] gi|193902879|gb|EDW01746.1| GH20288 [Drosophila grimshawi] Length = 802 Score = 41.7 bits (97), Expect = 0.089, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 78/201 (38%), Gaps = 52/201 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 235 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 294 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148 + + +++ID + QL +++ + + ++M A P Sbjct: 295 SPAIIFIDEIDAIAPKRDKTHGEVERRIVSQLLTLMDGMKKSSHLIVMAATNRPNSIDPA 354 Query: 149 --------VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV-IVKMFADRQIFIDKKLAA 199 + +PD RL+ V++I + E V + ++ A+ + LA+ Sbjct: 355 LRRFGRFDREIDIGIPDATGRLE---VLRIHTKNMKLHEDVDLEQIAAETHGHVGADLAS 411 Query: 200 YIVQRMERSLVFAEKLVDKMD 220 S +++ +KMD Sbjct: 412 LC------SEAALQQIREKMD 426 Score = 40.5 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 508 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKA 564 >gi|163797539|ref|ZP_02191489.1| putative insertion sequence ATP-binding protein, IS21 family [alpha proteobacterium BAL199] gi|159177138|gb|EDP61698.1| putative insertion sequence ATP-binding protein, IS21 family [alpha proteobacterium BAL199] Length = 281 Score = 41.7 bits (97), Expect = 0.089, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 62/173 (35%), Gaps = 42/173 (24%) Query: 29 FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILV--GPSGSGKSCLA---NI 83 F F + R A+ ++ + +R +L GP G+GKS LA + Sbjct: 75 SFDFSFQPSLDR-------HRIMALAQLE----FINRAEVLHFLGPPGTGKSHLATALGV 123 Query: 84 WSDKSR--------STRFSNIAKSLDSILID------TRKPVLLED----IDLLDFNDTQ 125 + K+ + +A+S + R +L+ D + + Sbjct: 124 AAVKAGRSVYRCTLAELIDALAQSEREGRLSEKIRFYARASLLIVDEIGYMPITSGGANL 183 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD------LCSRLK-AATVVKIS 171 F ++N+ ++ + +L T+ WG D L RL A VV+I Sbjct: 184 FFQLVNARYEKGAMIL-TSNRGFAEWGEVFGDPVVATALLDRLLHHAVVVQIE 235 >gi|154278255|ref|XP_001539944.1| vacuolar protein sorting-associated protein VPS4 [Ajellomyces capsulatus NAm1] gi|150413529|gb|EDN08912.1| vacuolar protein sorting-associated protein VPS4 [Ajellomyces capsulatus NAm1] Length = 353 Score = 41.7 bits (97), Expect = 0.089, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 14/80 (17%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + ++L GP G+GKS LA + ++ ST FS + L S + + ++ Sbjct: 95 PWKAILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESERLV---------- 144 Query: 123 DTQLFHIINSIHQYDSSLLM 142 QLF N + +++ Sbjct: 145 -KQLF---NMARESRPAIIF 160 >gi|67970603|dbj|BAE01644.1| unnamed protein product [Macaca fascicularis] Length = 440 Score = 41.7 bits (97), Expect = 0.089, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 218 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 269 >gi|330805727|ref|XP_003290830.1| cell division cycle protein 48 [Dictyostelium purpureum] gi|325079040|gb|EGC32661.1| cell division cycle protein 48 [Dictyostelium purpureum] Length = 792 Score = 41.7 bits (97), Expect = 0.090, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 46/121 (38%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP G GK+ +A ++++ + F SN+ K+ + + Sbjct: 235 PPKGILLYGPPGCGKTMIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 294 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + ++M A P S Sbjct: 295 APSIIFIDEIDSIAPKREKTQGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPA 354 Query: 155 L 155 L Sbjct: 355 L 355 Score = 39.0 bits (90), Expect = 0.60, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 508 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRELFDKA 564 >gi|323342363|ref|ZP_08082595.1| ATP-dependent metalloprotease FtsH [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463475|gb|EFY08669.1| ATP-dependent metalloprotease FtsH [Erysipelothrix rhusiopathiae ATCC 19414] Length = 631 Score = 41.7 bits (97), Expect = 0.090, Method: Composition-based stats. Identities = 31/213 (14%), Positives = 70/213 (32%), Gaps = 45/213 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 ++LVGP G+GK+ LA + ++ ++ + + Sbjct: 198 MLLVGPPGTGKTLLAKAAAGEADVPFYAISGSDFVEMFVGVGASRVRDMFKKAKATAPCI 257 Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + + L + ++ I + L++ A L Sbjct: 258 IFIDEIDAVGRQRGAGMGGGHDEREQTLNQLLVEMDGIEENSGVLVLAATNRDDVLDPAL 317 Query: 156 PDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER-SLVFAE 213 L R V + PD +++ +++I D + +I +R S E Sbjct: 318 --LRPGRFDRTITVGL--PDVKGRTEILQVHARNKKIA-DDVVLKHIARRTPGFSGADLE 372 Query: 214 KLVDKMDNLAL----SRGMGITRSLAAEVLKET 242 + ++ A+ IT + E + Sbjct: 373 NV---LNEAAILSVRENKTEITTDIIDEAIDRV 402 >gi|312375083|gb|EFR22519.1| hypothetical protein AND_15087 [Anopheles darlingi] Length = 790 Score = 41.7 bits (97), Expect = 0.090, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 21/43 (48%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109 V+LVGP G+GK+ LA + ++ F D +L+ Sbjct: 385 VLLVGPPGTGKTLLARAVAGEAGVPFFHAAGPEFDEVLVGQGA 427 >gi|262371848|ref|ZP_06065127.1| predicted protein [Acinetobacter junii SH205] gi|262311873|gb|EEY92958.1| predicted protein [Acinetobacter junii SH205] Length = 786 Score = 41.7 bits (97), Expect = 0.090, Method: Composition-based stats. Identities = 25/161 (15%), Positives = 56/161 (34%), Gaps = 34/161 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 ++L GP G+GK+ +A + + +S + L + I Sbjct: 575 ILLYGPPGTGKTQIARVLASQSGLSFIGATTSDLKANYIGQSGSKVKQLFEQARSQAPCI 634 Query: 111 VLLEDIDLLDFNDTQ-------------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 + +++ID++ L + + L+ A +P + Sbjct: 635 LFIDEIDIVAGARNGSNDSFIQEIVGQMLQELDGIATKEGQVFLLAASNYPENIDSA--- 691 Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198 L SRL+ ++I LP++ ++I + + D + Sbjct: 692 LMSRLE--RKIEIGLPNEFARSQIIANILRKKPTNFDVETI 730 >gi|255074337|ref|XP_002500843.1| predicted protein [Micromonas sp. RCC299] gi|226516106|gb|ACO62101.1| predicted protein [Micromonas sp. RCC299] Length = 818 Score = 41.7 bits (97), Expect = 0.090, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 24/48 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110 P R V+L GP G GK+ LA+ + ++ FS A + + + + Sbjct: 204 PPRGVLLHGPPGCGKTTLAHAIAREAGVPFFSIAAPEIVAGVSGESEA 251 Score = 35.5 bits (81), Expect = 6.5, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 54/160 (33%), Gaps = 35/160 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRF--------------SNIAKSLDSILIDTRKPVL 112 V+L GP G GK+ +A ++++ + S A P + Sbjct: 514 VLLYGPPGCGKTLVAKATANEANANFISIKGPELLNKYVGESERAVRTLFARARAASPCV 573 Query: 113 L--EDIDLLD---FND---------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158 L +++D L N+ QL ++ + S+ ++ A P + L Sbjct: 574 LFFDELDSLAPRRGNEGNQASERVVNQLLTEMDGLEARSSTFVVAATNRPDMIDSAM--L 631 Query: 159 C-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 RL V + PD I+K R+ + + Sbjct: 632 RPGRLDKLLYVPLPPPDG---RAAILKTLT-RKTPLAADV 667 >gi|261338170|ref|ZP_05966054.1| ATP-dependent metalloprotease FtsH [Bifidobacterium gallicum DSM 20093] gi|270276807|gb|EFA22661.1| ATP-dependent metalloprotease FtsH [Bifidobacterium gallicum DSM 20093] Length = 691 Score = 41.7 bits (97), Expect = 0.090, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 25/62 (40%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 R V+L GP G+GK+ LA + ++ +S + + + + D N Sbjct: 247 RGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEMFVGLGASRVRDVFDEAKKNAP 306 Query: 125 QL 126 + Sbjct: 307 AI 308 >gi|222152145|ref|YP_002561305.1| cell-division protein [Macrococcus caseolyticus JCSC5402] gi|222121274|dbj|BAH18609.1| cell-division protein [Macrococcus caseolyticus JCSC5402] Length = 690 Score = 41.7 bits (97), Expect = 0.090, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 65/197 (32%), Gaps = 45/197 (22%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ FS + + Sbjct: 205 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 264 Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + + L + ++ + + +++ A P L Sbjct: 265 IFIDEIDAVGRQRGAGVGGGHDEREQTLNQLLVEMDGFGENEGIIMIAATNRPDILDPAL 324 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211 L+ +++ PD E V+ R +D+ + + QR Sbjct: 325 ------LRPGRFDRQIQVGAPDVKGREAVLKVHA--RNKPLDETVDLKALSQRTP-GFSG 375 Query: 212 AEKLVDKMDNLALSRGM 228 A L + ++ AL Sbjct: 376 A-DLENLLNEAALVAAR 391 >gi|194400005|gb|ACF60961.1| neuronal spastin [Gallus gallus] Length = 489 Score = 41.7 bits (97), Expect = 0.090, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 30/50 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S +T F+ A SL S + + ++ Sbjct: 247 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 296 >gi|195036578|ref|XP_001989747.1| GH18966 [Drosophila grimshawi] gi|193893943|gb|EDV92809.1| GH18966 [Drosophila grimshawi] Length = 398 Score = 41.7 bits (97), Expect = 0.090, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + + ++ ++ I ++ E Sbjct: 175 PPKGCLLYGPPGTGKTLLARAIASQMDANFLKVVSSAIVDKYIGESARLIRE-------- 226 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 227 ------MFNYARDHQ 235 >gi|190406014|gb|EDV09281.1| ribosome biogenesis ATPase RIX7 [Saccharomyces cerevisiae RM11-1a] gi|259147956|emb|CAY81205.1| Rix7p [Saccharomyces cerevisiae EC1118] gi|323303931|gb|EGA57711.1| Rix7p [Saccharomyces cerevisiae FostersB] Length = 837 Score = 41.7 bits (97), Expect = 0.090, Method: Composition-based stats. Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P V+ L GP G GK+ LA +++SR+ S Sbjct: 567 PGGVL-LWGPPGCGKTLLAKAVANESRANFIS 597 >gi|170033703|ref|XP_001844716.1| cell division protease ftsH [Culex quinquefasciatus] gi|167874684|gb|EDS38067.1| cell division protease ftsH [Culex quinquefasciatus] Length = 757 Score = 41.7 bits (97), Expect = 0.090, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 21/43 (48%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109 V+LVGP G+GK+ LA + ++ F D +L+ Sbjct: 351 VLLVGPPGTGKTLLARAVAGEAGVPFFHAAGPEFDEVLVGQGA 393 >gi|71895307|ref|NP_001026232.1| spastin [Gallus gallus] gi|82233831|sp|Q5ZK92|SPAST_CHICK RecName: Full=Spastin gi|53131842|emb|CAG31851.1| hypothetical protein RCJMB04_12e12 [Gallus gallus] Length = 613 Score = 41.7 bits (97), Expect = 0.090, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 30/50 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S +T F+ A SL S + + ++ Sbjct: 371 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 420 >gi|6322994|ref|NP_013066.1| Rix7p [Saccharomyces cerevisiae S288c] gi|2492526|sp|Q07844|RIX7_YEAST RecName: Full=Ribosome biogenesis ATPase RIX7 gi|1360222|emb|CAA97483.1| unnamed protein product [Saccharomyces cerevisiae] gi|285813391|tpg|DAA09287.1| TPA: Rix7p [Saccharomyces cerevisiae S288c] Length = 837 Score = 41.7 bits (97), Expect = 0.090, Method: Composition-based stats. Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P V+ L GP G GK+ LA +++SR+ S Sbjct: 567 PGGVL-LWGPPGCGKTLLAKAVANESRANFIS 597 >gi|84499813|ref|ZP_00998101.1| ATPase, AAA family protein [Oceanicola batsensis HTCC2597] gi|84392957|gb|EAQ05168.1| ATPase, AAA family protein [Oceanicola batsensis HTCC2597] Length = 435 Score = 41.7 bits (97), Expect = 0.090, Method: Composition-based stats. Identities = 30/188 (15%), Positives = 61/188 (32%), Gaps = 26/188 (13%) Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 S ++ GP G GK+ +A + +D++ A + ++ Sbjct: 48 ASGSLSSLVFWGPPGVGKTTIARLLADETDLEFIQISAIFSGVADLKKVFEAAIQR--RR 105 Query: 120 DFNDTQLF----HIINSIHQYD-------SSLLM---TARTFPVSWGVCLPDLCSRLKAA 165 T LF H N Q ++L+ T L SR A Sbjct: 106 AGQGTLLFVDEIHRFNKAQQDGFLPHMEDGTILLVGATTENPSFELNAA---LLSR---A 159 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 V+ + + LE+++ + A+ + + A + + + LV+++ A Sbjct: 160 QVLVLERLGPEDLERLLQRAEAEIGQELELTDAARATLREMADGDGRALLNLVEQV--AA 217 Query: 224 LSRGMGIT 231 +T Sbjct: 218 WRVKAPLT 225 >gi|330686091|gb|EGG97713.1| ATP-dependent metallopeptidase HflB [Staphylococcus epidermidis VCU121] Length = 685 Score = 41.7 bits (97), Expect = 0.091, Method: Composition-based stats. Identities = 28/199 (14%), Positives = 65/199 (32%), Gaps = 47/199 (23%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ + FS + + Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260 Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + + L + ++ + + +++ A P L Sbjct: 261 IFIDEIDAVGRQRGAGVGGGHDEREQTLNQLLVEMDGFGENEGIIMIAATNRPDILDPAL 320 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY--IVQRMERSLV 210 L+ +++ PD E ++ ++ + + I QR Sbjct: 321 ------LRPGRFDRQIQVGRPDVKGREAILHVHAKNKPL---DETVDLKAISQRTP-GFS 370 Query: 211 FAEKLVDKMDNLALSRGMG 229 A L + ++ +L Sbjct: 371 GA-DLENLLNEASLIAARE 388 >gi|328792507|ref|XP_623784.2| PREDICTED: 26S protease regulatory subunit 10B [Apis mellifera] Length = 368 Score = 41.7 bits (97), Expect = 0.091, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + + ++ ++ I ++ E Sbjct: 170 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 221 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 222 ------MFNYARDHQ 230 >gi|319399668|gb|EFV87922.1| putative ATP-dependent metallopeptidase HflB [Staphylococcus epidermidis FRI909] Length = 700 Score = 41.7 bits (97), Expect = 0.091, Method: Composition-based stats. Identities = 28/199 (14%), Positives = 65/199 (32%), Gaps = 47/199 (23%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ + FS + + Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260 Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + + L + ++ + + +++ A P L Sbjct: 261 IFIDEIDAVGRQRGAGVGGGHDEREQTLNQLLVEMDGFGENEGIIMIAATNRPDILDPAL 320 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY--IVQRMERSLV 210 L+ +++ PD E ++ ++ + + I QR Sbjct: 321 ------LRPGRFDRQIQVGRPDVKGREAILHVHAKNKPL---DETVDLKAISQRTP-GFS 370 Query: 211 FAEKLVDKMDNLALSRGMG 229 A L + ++ +L Sbjct: 371 GA-DLENLLNEASLIAARE 388 >gi|314937282|ref|ZP_07844624.1| ATP-dependent metalloprotease FtsH [Staphylococcus hominis subsp. hominis C80] gi|313654578|gb|EFS18328.1| ATP-dependent metalloprotease FtsH [Staphylococcus hominis subsp. hominis C80] Length = 710 Score = 41.7 bits (97), Expect = 0.091, Method: Composition-based stats. Identities = 28/199 (14%), Positives = 65/199 (32%), Gaps = 47/199 (23%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ + FS + + Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260 Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + + L + ++ + + +++ A P L Sbjct: 261 IFIDEIDAVGRQRGAGVGGGHDEREQTLNQLLVEMDGFGENEGIIMIAATNRPDILDPAL 320 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY--IVQRMERSLV 210 L+ +++ PD E ++ ++ + + I QR Sbjct: 321 ------LRPGRFDRQIQVGRPDVKGREAILHVHAKNKPL---DETVDLKAISQRTP-GFS 370 Query: 211 FAEKLVDKMDNLALSRGMG 229 A L + ++ +L Sbjct: 371 GA-DLENLLNEASLIAARE 388 >gi|289551690|ref|YP_003472594.1| Cell division protein FtsH [Staphylococcus lugdunensis HKU09-01] gi|315660321|ref|ZP_07913174.1| ATP-dependent metalloprotease FtsH [Staphylococcus lugdunensis M23590] gi|289181221|gb|ADC88466.1| Cell division protein FtsH [Staphylococcus lugdunensis HKU09-01] gi|315494610|gb|EFU82952.1| ATP-dependent metalloprotease FtsH [Staphylococcus lugdunensis M23590] Length = 695 Score = 41.7 bits (97), Expect = 0.091, Method: Composition-based stats. Identities = 28/199 (14%), Positives = 65/199 (32%), Gaps = 47/199 (23%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ + FS + + Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260 Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + + L + ++ + + +++ A P L Sbjct: 261 IFIDEIDAVGRQRGAGVGGGHDEREQTLNQLLVEMDGFGENEGIIMIAATNRPDILDPAL 320 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY--IVQRMERSLV 210 L+ +++ PD E ++ ++ + + I QR Sbjct: 321 ------LRPGRFDRQIQVGRPDVKGREAILHVHAKNKPL---DETVDLKAISQRTP-GFS 370 Query: 211 FAEKLVDKMDNLALSRGMG 229 A L + ++ +L Sbjct: 371 GA-DLENLLNEASLIAARE 388 >gi|239637497|ref|ZP_04678471.1| Cell division protease FtsH homolog [Staphylococcus warneri L37603] gi|239596942|gb|EEQ79465.1| Cell division protease FtsH homolog [Staphylococcus warneri L37603] Length = 685 Score = 41.7 bits (97), Expect = 0.091, Method: Composition-based stats. Identities = 28/199 (14%), Positives = 65/199 (32%), Gaps = 47/199 (23%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ + FS + + Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260 Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + + L + ++ + + +++ A P L Sbjct: 261 IFIDEIDAVGRQRGAGVGGGHDEREQTLNQLLVEMDGFGENEGIIMIAATNRPDILDPAL 320 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY--IVQRMERSLV 210 L+ +++ PD E ++ ++ + + I QR Sbjct: 321 ------LRPGRFDRQIQVGRPDVKGREAILHVHAKNKPL---DETVDLKAISQRTP-GFS 370 Query: 211 FAEKLVDKMDNLALSRGMG 229 A L + ++ +L Sbjct: 371 GA-DLENLLNEASLIAARE 388 >gi|228476204|ref|ZP_04060907.1| Cell division protease FtsH homolog [Staphylococcus hominis SK119] gi|228269689|gb|EEK11188.1| Cell division protease FtsH homolog [Staphylococcus hominis SK119] Length = 710 Score = 41.7 bits (97), Expect = 0.091, Method: Composition-based stats. Identities = 28/199 (14%), Positives = 65/199 (32%), Gaps = 47/199 (23%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ + FS + + Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260 Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + + L + ++ + + +++ A P L Sbjct: 261 IFIDEIDAVGRQRGAGVGGGHDEREQTLNQLLVEMDGFGENEGIIMIAATNRPDILDPAL 320 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY--IVQRMERSLV 210 L+ +++ PD E ++ ++ + + I QR Sbjct: 321 ------LRPGRFDRQIQVGRPDVKGREAILHVHAKNKPL---DETVDLKAISQRTP-GFS 370 Query: 211 FAEKLVDKMDNLALSRGMG 229 A L + ++ +L Sbjct: 371 GA-DLENLLNEASLIAARE 388 >gi|224047638|ref|XP_002192184.1| PREDICTED: spastin isoform 2 [Taeniopygia guttata] Length = 580 Score = 41.7 bits (97), Expect = 0.091, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 30/50 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S +T F+ A SL S + + ++ Sbjct: 338 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 387 >gi|158298980|ref|XP_319111.4| AGAP009973-PA [Anopheles gambiae str. PEST] gi|157014148|gb|EAA13918.4| AGAP009973-PA [Anopheles gambiae str. PEST] Length = 570 Score = 41.7 bits (97), Expect = 0.091, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 21/43 (48%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109 V+LVGP G+GK+ LA + ++ F D +L+ Sbjct: 165 VLLVGPPGTGKTLLARAVAGEAGVPFFHAAGPEFDEVLVGQGA 207 >gi|149412391|ref|XP_001509194.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus] Length = 572 Score = 41.7 bits (97), Expect = 0.091, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 30/50 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S +T F+ A SL S + + ++ Sbjct: 330 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 379 >gi|219848796|ref|YP_002463229.1| AAA ATPase [Chloroflexus aggregans DSM 9485] gi|219543055|gb|ACL24793.1| AAA ATPase [Chloroflexus aggregans DSM 9485] Length = 354 Score = 41.7 bits (97), Expect = 0.091, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 36/98 (36%), Gaps = 11/98 (11%) Query: 49 IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTR----FSNIAKSLDSIL 104 + A ++ R ++L GPSGSG+S L + + + + L + Sbjct: 24 LGAACEQLER-----RRPLLLYGPSGSGRSSLLTHLAQAAGAVLEIPNLNAFYLDLALLP 78 Query: 105 IDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLM 142 T L+ + L ++ + + + +L+ Sbjct: 79 DATTTYSLI--VRALGGSEPTITALERRLAANGRPVLI 114 >gi|78043136|ref|YP_360914.1| ABC transporter ATP-binding protein [Carboxydothermus hydrogenoformans Z-2901] gi|77995251|gb|ABB14150.1| ABC transporter, ATP-binding protein [Carboxydothermus hydrogenoformans Z-2901] Length = 229 Score = 41.7 bits (97), Expect = 0.091, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 18/64 (28%) Query: 68 ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF--NDTQ 125 I+ GPSGSGKS L +I L S+ VL++D+DL ++ Sbjct: 37 IIAGPSGSGKSTLLSI----------------LGSLNEPDSGRVLVDDLDLFSLSHDERA 80 Query: 126 LFHI 129 LF + Sbjct: 81 LFRL 84 >gi|27469190|ref|NP_765827.1| cell-division protein [Staphylococcus epidermidis ATCC 12228] gi|57866073|ref|YP_187746.1| cell division protein FtsH [Staphylococcus epidermidis RP62A] gi|242241596|ref|ZP_04796041.1| cell division protein FtsH [Staphylococcus epidermidis W23144] gi|251809818|ref|ZP_04824291.1| cell division protein FtsH [Staphylococcus epidermidis BCM-HMP0060] gi|282875442|ref|ZP_06284314.1| ATP-dependent metallopeptidase HflB [Staphylococcus epidermidis SK135] gi|293366153|ref|ZP_06612840.1| ATP-dependent metalloprotease FtsH [Staphylococcus epidermidis M23864:W2(grey)] gi|27316739|gb|AAO05914.1|AE016751_209 cell-division protein [Staphylococcus epidermidis ATCC 12228] gi|57636731|gb|AAW53519.1| cell division protein FtsH, putative [Staphylococcus epidermidis RP62A] gi|242234977|gb|EES37288.1| cell division protein FtsH [Staphylococcus epidermidis W23144] gi|251806686|gb|EES59343.1| cell division protein FtsH [Staphylococcus epidermidis BCM-HMP0060] gi|281295799|gb|EFA88321.1| ATP-dependent metallopeptidase HflB [Staphylococcus epidermidis SK135] gi|291319747|gb|EFE60106.1| ATP-dependent metalloprotease FtsH [Staphylococcus epidermidis M23864:W2(grey)] gi|329723965|gb|EGG60490.1| ATP-dependent metallopeptidase HflB [Staphylococcus epidermidis VCU144] gi|329733033|gb|EGG69372.1| ATP-dependent metallopeptidase HflB [Staphylococcus epidermidis VCU028] gi|329737911|gb|EGG74139.1| ATP-dependent metallopeptidase HflB [Staphylococcus epidermidis VCU045] Length = 700 Score = 41.7 bits (97), Expect = 0.091, Method: Composition-based stats. Identities = 28/199 (14%), Positives = 65/199 (32%), Gaps = 47/199 (23%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ + FS + + Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260 Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + + L + ++ + + +++ A P L Sbjct: 261 IFIDEIDAVGRQRGAGVGGGHDEREQTLNQLLVEMDGFGENEGIIMIAATNRPDILDPAL 320 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY--IVQRMERSLV 210 L+ +++ PD E ++ ++ + + I QR Sbjct: 321 ------LRPGRFDRQIQVGRPDVKGREAILHVHAKNKPL---DETVDLKAISQRTP-GFS 370 Query: 211 FAEKLVDKMDNLALSRGMG 229 A L + ++ +L Sbjct: 371 GA-DLENLLNEASLIAARE 388 >gi|58260308|ref|XP_567564.1| MMS2 [Cryptococcus neoformans var. neoformans JEC21] gi|134116242|ref|XP_773075.1| hypothetical protein CNBJ0700 [Cryptococcus neoformans var. neoformans B-3501A] gi|50255696|gb|EAL18428.1| hypothetical protein CNBJ0700 [Cryptococcus neoformans var. neoformans B-3501A] gi|57229614|gb|AAW46047.1| MMS2, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 810 Score = 41.7 bits (97), Expect = 0.091, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 63/164 (38%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 239 PPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 298 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + ++++D + QL +++ + + ++M A P S Sbjct: 299 SPSIIFIDELDSIAPKREKANGEVERRVVSQLLTLMDGLKARSNVVVMAATNRPNSIDPA 358 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L R + V I +PD +++ + + + + Sbjct: 359 LR----RFGRFDREVDIGIPDPTGRLEIL--RIHTKNMKLSDDV 396 Score = 37.8 bits (87), Expect = 1.5, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 27/57 (47%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G+GK+ LA +++ ++ S L ++ + + + D Sbjct: 512 PSKGVLFYGPPGTGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKA 568 >gi|297849202|ref|XP_002892482.1| 26S proteasome aaa-ATPase subunit rpt5B [Arabidopsis lyrata subsp. lyrata] gi|297338324|gb|EFH68741.1| 26S proteasome aaa-ATPase subunit rpt5B [Arabidopsis lyrata subsp. lyrata] Length = 406 Score = 41.7 bits (97), Expect = 0.091, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 11/70 (15%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF-----------SNIAKSLDSILIDTRKPV 111 P + V+L GP G+GK+ +A + ++ +T D+ L+ K Sbjct: 194 PPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLMFIGDGAKLVRDAFLLAKEKSP 253 Query: 112 LLEDIDLLDF 121 + ID +D Sbjct: 254 CIIFIDEIDA 263 >gi|257890950|ref|ZP_05670603.1| recombination factor protein RarA [Enterococcus faecium 1,231,410] gi|257827310|gb|EEV53936.1| recombination factor protein RarA [Enterococcus faecium 1,231,410] Length = 342 Score = 41.7 bits (97), Expect = 0.091, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 67/178 (37%), Gaps = 32/178 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117 +IL GP G+GK+ +A+ + + + R N A + + +LL+++ Sbjct: 42 MILYGPPGTGKTSIASAIAGSTNYAFRMLNAATDSKKDLQVVAEEAKMSGTVILLLDEVH 101 Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 LD D L H+ + +L+ A T + P + SR + ++ + Sbjct: 102 RLDKTKQDFLLPHL-----ESGRIILIGATTENPYITIN-PAIRSR---TQIFEVKPLTE 152 Query: 176 DFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLV-FAEKLVDKMDNLALS 225 ++ + D R + +D+ + + R+ ++ ++ LS Sbjct: 153 QDIQLAVEHALRDKERGLGQQAIQLDEDA----LLHLSRATNGDLRSALNGLELATLS 206 >gi|239791471|dbj|BAH72196.1| ACYPI010231 [Acyrthosiphon pisum] Length = 173 Score = 41.7 bits (97), Expect = 0.091, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + + ++ ++ I ++ E Sbjct: 65 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 116 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 117 ------MFNYARDHQ 125 >gi|224542103|ref|ZP_03682642.1| hypothetical protein CATMIT_01278 [Catenibacterium mitsuokai DSM 15897] gi|224525036|gb|EEF94141.1| hypothetical protein CATMIT_01278 [Catenibacterium mitsuokai DSM 15897] Length = 423 Score = 41.7 bits (97), Expect = 0.091, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 58/150 (38%), Gaps = 19/150 (12%) Query: 67 VILVGPSGSGKSCLANIWSDK---------SRSTRFSNIAKSLDSILIDTRKPVLLEDID 117 +IL GP G GK+ +A + + + + + + + V+++++ Sbjct: 43 IILYGPPGCGKTTIAKALAHDLNIPYRIFNASTGNKKEMDQIITEAKLSEGLFVIVDEVH 102 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 L+ H++ I L++ T + P + SR V ++ +++ Sbjct: 103 RLNKAKQD--HLLPYIES--GLLIIAGCTTANPYHSINPAIRSRCHLCEVKPLN--NEEI 156 Query: 178 LEKVIVKMFADRQI----FIDKKLAAYIVQ 203 ++ ++R + ID+ + YI + Sbjct: 157 VKACKRAAVSERGLNHQYEIDEDVYDYIAR 186 >gi|222478623|ref|YP_002564860.1| 26S proteasome subunit P45 family [Halorubrum lacusprofundi ATCC 49239] gi|222451525|gb|ACM55790.1| 26S proteasome subunit P45 family [Halorubrum lacusprofundi ATCC 49239] Length = 405 Score = 41.7 bits (97), Expect = 0.091, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 28/65 (43%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P V+L GP G+GK+ LA ++++ +T L I ++ + ++ N Sbjct: 182 PPSGVLLYGPPGTGKTMLAKAVANETDATFIKMAGSELVHKFIGEGAKLVRDLFEVAREN 241 Query: 123 DTQLF 127 + Sbjct: 242 QPAVL 246 >gi|153854634|ref|ZP_01995884.1| hypothetical protein DORLON_01879 [Dorea longicatena DSM 13814] gi|149752738|gb|EDM62669.1| hypothetical protein DORLON_01879 [Dorea longicatena DSM 13814] Length = 439 Score = 41.7 bits (97), Expect = 0.091, Method: Composition-based stats. Identities = 35/200 (17%), Positives = 76/200 (38%), Gaps = 33/200 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 VI GP G+GK+ LA + ++ + + A + ++ E + + T L Sbjct: 55 VIFYGPPGTGKTTLAKVIANTTSAEFTQINATTAGKKDMEEVINKAKE-MQGMYRKKTIL 113 Query: 127 F----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N + + +L+ A T + V L SR +++ ++ Sbjct: 114 FVDEIHRFNKGQQDYLLPFVEDGTIILIGATTENPYFEVNGA-LLSR---SSIFELQPLA 169 Query: 175 DDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 + ++ +I + D Q ID+ ++ + S A ++ ++ L+ Sbjct: 170 KEDIKTLITRAVYDTVKGMGSYQAVIDEDALEFLA---DISGGDARSALNAVELGILTTE 226 Query: 228 M------GITRSLAAEVLKE 241 IT +A+E +++ Sbjct: 227 RSADGKIRITLDVASECIQK 246 >gi|119482299|ref|XP_001261178.1| cell division control protein Cdc48 [Neosartorya fischeri NRRL 181] gi|119409332|gb|EAW19281.1| cell division control protein Cdc48 [Neosartorya fischeri NRRL 181] Length = 819 Score = 41.7 bits (97), Expect = 0.091, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 49/121 (40%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 255 PPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 314 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + + ++M A P S Sbjct: 315 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSIDPA 374 Query: 155 L 155 L Sbjct: 375 L 375 >gi|116251573|ref|YP_767411.1| recombination factor protein RarA [Rhizobium leguminosarum bv. viciae 3841] gi|115256221|emb|CAK07302.1| putative ATPase AAA family protein [Rhizobium leguminosarum bv. viciae 3841] Length = 438 Score = 41.7 bits (97), Expect = 0.091, Method: Composition-based stats. Identities = 34/188 (18%), Positives = 69/188 (36%), Gaps = 31/188 (16%) Query: 54 RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPV 111 R+I+ S +I GP G+GK+ +A + S ++ + S I + + Sbjct: 47 RMIE---SGSLGSMIFWGPPGTGKTTVARLLSGEAGLAFEQISAIFSGVADLKKVFETA- 102 Query: 112 LLEDIDLLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPD 157 + +D T LF H N + + +L+ T Sbjct: 103 ---RLRRMDGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVILVGATTENPSFELNAA--- 156 Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKL 215 L SR A V+ D++ LE+++ + A Q + + + A +++ + L Sbjct: 157 LLSR---ARVLTFKSHDEESLEELLKRAEAIEQKSLPLTEDARASLIRMADGDGRAVLTL 213 Query: 216 VDKMDNLA 223 +++ A Sbjct: 214 AEEVWRAA 221 >gi|88801469|ref|ZP_01116997.1| AAA ATPase, CDC48 [Polaribacter irgensii 23-P] gi|88782127|gb|EAR13304.1| AAA ATPase, CDC48 [Polaribacter irgensii 23-P] Length = 717 Score = 41.7 bits (97), Expect = 0.091, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 15/72 (20%) Query: 36 LGISRDDLLVHSAIEQAVRLIDS--WP-----------SWPSRVVILVGPSGSGKSCLAN 82 + DD V E L ++ WP + P + +IL GP G+GK+ LA Sbjct: 452 PDVKWDD--VGGLNEIKEALKEAIEWPLKYAELFRKADTNPPKGIILYGPPGTGKTYLAK 509 Query: 83 IWSDKSRSTRFS 94 + +S S Sbjct: 510 AVASESGVNFIS 521 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 31/204 (15%), Positives = 64/204 (31%), Gaps = 52/204 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRKP 110 P + V L GP G+GK+ + + ++ + + L + D + Sbjct: 215 PPKGVFLYGPPGTGKTLIVRAVASETDAYFLHISGPEIMGKFYGESEERLRKVFADAQAH 274 Query: 111 ----VLLEDIDLLDFNDT--------------QLFHIINSIHQYDSSLLMTARTFPVSWG 152 + +++ID + QL +++ + +++ A P Sbjct: 275 APAIIFIDEIDAIAPKREDLGGEKQVEKRVVAQLLSLMDGLESRGKVIVIGATNIP---N 331 Query: 153 VCLPDLC--SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 P L R V I PD +++ R + + + SL Sbjct: 332 TIDPALRRPGRFDRELSVSI--PDKKGRLEILE--IHTRGMPLAIDV----------SLE 377 Query: 211 FAEKLVDKM---DNLALSRGMGIT 231 ++ D AL+R +T Sbjct: 378 KLAEITHGFVGADLEALAREAAMT 401 >gi|83941468|ref|ZP_00953930.1| ATPase, AAA family protein [Sulfitobacter sp. EE-36] gi|83847288|gb|EAP85163.1| ATPase, AAA family protein [Sulfitobacter sp. EE-36] Length = 435 Score = 41.7 bits (97), Expect = 0.091, Method: Composition-based stats. Identities = 34/204 (16%), Positives = 72/204 (35%), Gaps = 27/204 (13%) Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDID 117 S +I GP G GK+ +A + +D++ + S I + + I Sbjct: 49 QSGSLGSLIFWGPPGVGKTTIARLLADETDLHFVQISAIFSGVPELRKVFDAA----KIR 104 Query: 118 LLDFNDTQLF----HIINSIHQYD-------SSLLM---TARTFPVSWGVCLPDLCSRLK 163 + T LF H N Q ++L+ T + SR + Sbjct: 105 RQNGRGTLLFVDEIHRFNKAQQDGFLPHMEDGTILLVGATTENPSFELNAAV---LSRSQ 161 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + ++ L D + L + K R + +D +++ + L++++ A Sbjct: 162 VLVLERLPLADLERLAQRAEKELG-RGLPLDGPARENLLEMADGDGRALLNLIEQV--AA 218 Query: 224 LSRGMGIT-RSLAAEVLKETQQCD 246 + ++L+A +++ Q D Sbjct: 219 WKVEGKLDGKALSARLMRRAAQYD 242 >gi|325287034|ref|YP_004262824.1| AAA ATPase central domain-containing protein [Cellulophaga lytica DSM 7489] gi|324322488|gb|ADY29953.1| AAA ATPase central domain protein [Cellulophaga lytica DSM 7489] Length = 425 Score = 41.7 bits (97), Expect = 0.092, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 51/142 (35%), Gaps = 26/142 (18%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS---------------TRFSNIAKSLDSILIDTRK 109 +IL GP G+GK+ LANI +++ AK + Sbjct: 40 PSLILWGPPGTGKTTLANIIANEIDRPFYTLSAISSGVKDVREVIEKAKKSGGLFTTKNP 99 Query: 110 PVLLEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168 + +++I + L + + L+ A T S+ V +P L SR V Sbjct: 100 ILFIDEIHRFSKSQQDSLL----AAVEKGWVTLIGATTENPSFEV-IPALLSR---CQVY 151 Query: 169 KISLPDDDFLEKVIVKMFADRQ 190 + D L ++ + A RQ Sbjct: 152 ILKPFDKHDLVTLLER--AIRQ 171 >gi|253741751|gb|EES98614.1| P60 katanin [Giardia intestinalis ATCC 50581] Length = 501 Score = 41.7 bits (97), Expect = 0.092, Method: Composition-based stats. Identities = 37/191 (19%), Positives = 74/191 (38%), Gaps = 58/191 (30%) Query: 62 WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS----------------ILI 105 WP+ ++L GP+G+GK+ +A+ + ++ F+ + S Sbjct: 245 WPTTGLLLYGPAGTGKTLMASAVATQAGYNFFNVAVSDIVSKWKGEAVLCVRALYTIARA 304 Query: 106 DTRKPVLLEDIDLL------DFNDTQL-----F--------HIINSIHQYD-----SSLL 141 V +++ID L ++T + F H + + D +L+ Sbjct: 305 CAPSVVFIDEIDALVSGDSRTTDETSIQIRTEFQTQLDGFQHKMLDSVEEDLSFNPDTLV 364 Query: 142 MT--ARTFPVSWGVCLPDLC---SRLKAATVVKISLPDDDFLEKVIVKMFA-DRQIFIDK 195 +T A FP W + P L SR + I LPD+ +++++ +RQ D Sbjct: 365 ITIGATNFP--WKLDGPILRRFTSR------IYIGLPDEATIKELLTIYVDFERQ---DP 413 Query: 196 KL-AAYIVQRM 205 + ++ R+ Sbjct: 414 SVTIDWLASRL 424 >gi|153829956|ref|ZP_01982623.1| putative Cell division protein FtsH homolog [Vibrio cholerae 623-39] gi|148874542|gb|EDL72677.1| putative Cell division protein FtsH homolog [Vibrio cholerae 623-39] Length = 320 Score = 41.7 bits (97), Expect = 0.092, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 52/160 (32%), Gaps = 42/160 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106 ++L GP G GK+ A + + + F+ NI + Sbjct: 65 AGGGLLLYGPPGCGKTYFARAIAGECHAAFFNVSIDDILDMYLGNSEKNIQALFATARAH 124 Query: 107 TRKPVLLEDIDLLDFNDTQLFH-----IINSIH--------QYDSSLLMTARTFP--VSW 151 + +++ID L L H IN ++ L++ A P V Sbjct: 125 KPAVIFIDEIDALGRKRELLRHTSLTTTINHFLAELDGVESDNENLLVIGATNAPWDVDS 184 Query: 152 GVCLP---DLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 P DL + +S PD + ++ ++ AD Sbjct: 185 AFRRPGRFDL--------TLFVSPPDAKARQDILQRLLAD 216 >gi|116326272|ref|YP_802992.1| gp44 clamp-loader subunit [Enterobacteria phage RB32] gi|115343865|gb|ABI94874.1| gp44 clamp-loader subunit [Enterobacteria phage RB32] Length = 319 Score = 41.7 bits (97), Expect = 0.092, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 72/184 (39%), Gaps = 36/184 (19%) Query: 65 RVVILVGPS-GSGKSCLANIWSDKSRS--------------TRFSNIAKSLDSILIDTRK 109 +IL PS G+GK+ +A + R + + +K Sbjct: 43 PHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKIDFVRGPLTNFASAASFDGRQK 102 Query: 110 PVLLEDIDLLDFNDTQLFHI--INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 +++++ D ++Q H+ + + S+++TA + + L SR + V Sbjct: 103 VIVIDEFDRSGLAESQR-HLRSFMEAYSSNCSIIITA----NNIDGIIKPLQSR---SRV 154 Query: 168 VKISLPDD----DFLEKVIVKM---FADRQIFIDK-KLAAYIVQRMERSLVFAEKLVDKM 219 + P D + ++++I ++ I I K+ A +V++ + K + ++ Sbjct: 155 ITFGQPTDEDKIEMMKQMIRRLTEICKREGIAIADMKVVAALVKK---NFPDFRKTIGEL 211 Query: 220 DNLA 223 D+ + Sbjct: 212 DSYS 215 >gi|308474132|ref|XP_003099288.1| CRE-CDC-48.3 protein [Caenorhabditis remanei] gi|308267427|gb|EFP11380.1| CRE-CDC-48.3 protein [Caenorhabditis remanei] Length = 728 Score = 41.7 bits (97), Expect = 0.093, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 57/127 (44%), Gaps = 6/127 (4%) Query: 63 PSRVVILVGPSGSGKSCLAN-IWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 P V++ G GSGK+ L + S + + L + D V++ D++ ++ Sbjct: 274 PPCSVLIWGLPGSGKTLLLQELSRVLSGNVTYIGSCDELVELGGDVTGQVVIVDLNEVEK 333 Query: 122 NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 ++++ H + + + + ++ + S DL R++ +I++P + ++ Sbjct: 334 ENSKVNHALGKLLAEEKTCVILSVRSSESL-----DLGFRVRFPVEAEITVPTQEERLEI 388 Query: 182 IVKMFAD 188 + K+ A+ Sbjct: 389 LSKISAN 395 >gi|293375861|ref|ZP_06622127.1| ATP-dependent metallopeptidase HflB [Turicibacter sanguinis PC909] gi|325841821|ref|ZP_08167481.1| ATP-dependent metallopeptidase HflB [Turicibacter sp. HGF1] gi|292645506|gb|EFF63550.1| ATP-dependent metallopeptidase HflB [Turicibacter sanguinis PC909] gi|325489851|gb|EGC92203.1| ATP-dependent metallopeptidase HflB [Turicibacter sp. HGF1] Length = 677 Score = 41.7 bits (97), Expect = 0.093, Method: Composition-based stats. Identities = 35/224 (15%), Positives = 71/224 (31%), Gaps = 53/224 (23%) Query: 42 DLLVHSA--IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS 99 D L A E R+ P ++ LVGP G+GK+ LA + ++ +S Sbjct: 203 DFLKSPAKYNEMGARV-------PKGIL-LVGPPGTGKTLLARAVAGEAGVPFYSISGSD 254 Query: 100 LDSILIDTRKP----------------VLLEDIDLLDFN------------DTQLFHI-- 129 + + + +++ID + + L + Sbjct: 255 FVEMFVGVGASRVRDMFQTAKKTAPCIIFIDEIDAVGRQRGAGMGGGHDEREQTLNQLLV 314 Query: 130 -INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKM 185 ++ ++M A P L L+ + I PD E ++ Sbjct: 315 EMDGFGPNSGIIVMAATNRPDVLDPAL------LRPGRFDRQITIGRPDVKGREAILKVH 368 Query: 186 FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229 ++++ + +L I +R A L + ++ AL Sbjct: 369 ARNKRLAPEVRLED-IARRTP-GFSGA-DLENLLNESALLAARE 409 >gi|255710671|ref|XP_002551619.1| KLTH0A03696p [Lachancea thermotolerans] gi|238932996|emb|CAR21177.1| KLTH0A03696p [Lachancea thermotolerans] Length = 781 Score = 41.7 bits (97), Expect = 0.093, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 29/50 (58%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P R ++L GP G+GK+ LA + +S ST FS A SL S + + ++ Sbjct: 528 PVRGMLLFGPPGTGKTMLARAVATESNSTFFSISASSLTSKYLGESEKLV 577 >gi|242012194|ref|XP_002426820.1| ATP-dependent metalloprotease, putative [Pediculus humanus corporis] gi|212511027|gb|EEB14082.1| ATP-dependent metalloprotease, putative [Pediculus humanus corporis] Length = 559 Score = 41.7 bits (97), Expect = 0.093, Method: Composition-based stats. Identities = 15/43 (34%), Positives = 22/43 (51%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109 V+LVGP G+GK+ LA + ++R F D IL+ Sbjct: 145 VLLVGPPGTGKTLLARAVAGEARVPFFHAAGPEFDEILVGQGA 187 >gi|198457521|ref|XP_001360696.2| GA15351 [Drosophila pseudoobscura pseudoobscura] gi|198136008|gb|EAL25271.2| GA15351 [Drosophila pseudoobscura pseudoobscura] Length = 801 Score = 41.7 bits (97), Expect = 0.093, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 78/201 (38%), Gaps = 52/201 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 234 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 293 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148 + + +++ID + QL +++ + + ++M A P Sbjct: 294 SPAIIFIDEIDAIAPKRDKTHGEVERRIVSQLLTLMDGMKKSSHLIVMAATNRPNSIDPA 353 Query: 149 --------VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV-IVKMFADRQIFIDKKLAA 199 + +PD RL+ V++I + E V + ++ A+ + LA+ Sbjct: 354 LRRFGRFDREIDIGIPDATGRLE---VLRIHTKNMKLHEDVDLEQIAAETHGHVGADLAS 410 Query: 200 YIVQRMERSLVFAEKLVDKMD 220 S +++ +KMD Sbjct: 411 LC------SEAALQQIREKMD 425 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 507 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKA 563 >gi|162148915|ref|YP_001603376.1| transposase [Gluconacetobacter diazotrophicus PAl 5] gi|161787492|emb|CAP57088.1| putative transposase [Gluconacetobacter diazotrophicus PAl 5] Length = 259 Score = 41.7 bits (97), Expect = 0.093, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 58/145 (40%), Gaps = 26/145 (17%) Query: 32 FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--VILVGPSGSGKSCLANIWSDKS- 88 FP ++ D E VR + + R V+L+G G+GK+ LA + ++ Sbjct: 69 FPAYKDLAGFDFSAAEVNEAMVRQL-HAGDFIDRADNVVLIGGPGTGKTHLATALAVQAI 127 Query: 89 -------RSTRFSNIAKSLDSILIDTRKPVLLE---DIDLLDFND-----------TQLF 127 R ++ +L+ R + E +DL+ ++ LF Sbjct: 128 EHHRKKIRFWSTVDLVNALEQEKTANRAGQIAERLLRLDLVILDELGYLPFSASGGALLF 187 Query: 128 HIINSIHQYDSSLLMTARTFPVSWG 152 H+++ +++ +S+++T WG Sbjct: 188 HLLSRLYER-TSVIITTNLSFSEWG 211 >gi|146302995|ref|YP_001190311.1| AAA family ATPase [Metallosphaera sedula DSM 5348] gi|145701245|gb|ABP94387.1| AAA family ATPase, CDC48 subfamily [Metallosphaera sedula DSM 5348] Length = 768 Score = 41.7 bits (97), Expect = 0.093, Method: Composition-based stats. Identities = 34/224 (15%), Positives = 77/224 (34%), Gaps = 70/224 (31%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTRKP 110 P + ++L GP G GK+ LA ++++ S + + L I D +K Sbjct: 224 PPKGIMLYGPPGVGKTLLAKAVANETESYFTSINGPEIMSKFYGESEQRLREIFEDAKKH 283 Query: 111 ----VLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFP------ 148 + ++++D + ++ QL +++ + + +++ A P Sbjct: 284 APAIIFIDEVDAIAPKRDEVIGEVERRVVAQLLTLMDGLESRGNVIVIAATNRPNAVDPA 343 Query: 149 --------VSWGVCLPDLCSRL-------KAATV---VKISLPDD-------DFLEKVIV 183 + LPD RL + + V++ D L ++ Sbjct: 344 LRRPGRFDREIEIPLPDKQGRLEILQIHTRNMPLSKDVELEKLADISHGYTGADLSALVR 403 Query: 184 KMF--ADR---------QIFIDKKLAAYIVQRMERSLVFAEKLV 216 + A R Q I ++ + +ME + +++V Sbjct: 404 EAAMNALRRYLPMIDISQDKIPPEILERMEVKMEDFMNAFKEIV 447 Score = 37.4 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 19/32 (59%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + ++L GP G+GK+ LA + +S + + Sbjct: 497 PPKGILLFGPPGTGKTMLAKAVATESGANFIA 528 >gi|85717455|ref|ZP_01048403.1| putative transposase [Nitrobacter sp. Nb-311A] gi|85717580|ref|ZP_01048522.1| putative transposase [Nitrobacter sp. Nb-311A] gi|85695585|gb|EAQ33501.1| putative transposase [Nitrobacter sp. Nb-311A] gi|85695701|gb|EAQ33611.1| putative transposase [Nitrobacter sp. Nb-311A] Length = 287 Score = 41.7 bits (97), Expect = 0.093, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 22/110 (20%) Query: 64 SRVVILVGPSGSGKSCLANIWS-------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 R V+LVG +G+GK+ LA + + R ++ L+ + R+ L E + Sbjct: 98 QRNVVLVGGTGTGKTHLAIAIARSCIRSGARGRFYNVVDLVNRLEIETRNGRQGRLAEHL 157 Query: 117 ---DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 D + ++ LFH+++ +++ +S+++T W Sbjct: 158 TRMDFIVLDELGYLPFAQSGGQLLFHLVSRLYER-ASVIVTTNLAFGEWP 206 >gi|85717483|ref|ZP_01048430.1| putative transposase [Nitrobacter sp. Nb-311A] gi|85695678|gb|EAQ33589.1| putative transposase [Nitrobacter sp. Nb-311A] Length = 287 Score = 41.7 bits (97), Expect = 0.093, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 22/110 (20%) Query: 64 SRVVILVGPSGSGKSCLANIWS-------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 R V+LVG +G+GK+ LA + + R ++ L+ + R+ L E + Sbjct: 98 QRNVVLVGGTGTGKTHLAIAIARSCIQSGARGRFYNVVDLVNRLEIETRNGRQGRLAEHL 157 Query: 117 ---DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 D + ++ LFH+++ +++ +S+++T W Sbjct: 158 TRMDFIVLDELGYLPFAQSGGQLLFHLVSRLYER-ASVIVTTNLAFGEWP 206 >gi|195379959|ref|XP_002048738.1| GJ21209 [Drosophila virilis] gi|194143535|gb|EDW59931.1| GJ21209 [Drosophila virilis] Length = 801 Score = 41.7 bits (97), Expect = 0.094, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 78/201 (38%), Gaps = 52/201 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 234 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 293 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148 + + +++ID + QL +++ + + ++M A P Sbjct: 294 SPAIIFIDEIDAIAPKRDKTHGEVERRIVSQLLTLMDGMKKSSHLIVMAATNRPNSIDPA 353 Query: 149 --------VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV-IVKMFADRQIFIDKKLAA 199 + +PD RL+ V++I + E V + ++ A+ + LA+ Sbjct: 354 LRRFGRFDREIDIGIPDATGRLE---VLRIHTKNMKLHEDVDLEQIAAETHGHVGADLAS 410 Query: 200 YIVQRMERSLVFAEKLVDKMD 220 S +++ +KMD Sbjct: 411 LC------SEAALQQIREKMD 425 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 507 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKA 563 >gi|157693158|ref|YP_001487620.1| recombination factor protein RarA [Bacillus pumilus SAFR-032] gi|157681916|gb|ABV63060.1| crossover junction endodeoxyribonuclease ATPase [Bacillus pumilus SAFR-032] Length = 421 Score = 41.7 bits (97), Expect = 0.094, Method: Composition-based stats. Identities = 27/197 (13%), Positives = 68/197 (34%), Gaps = 32/197 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKS-------RSTRFS--NIAKSLDSILIDTRKPVLLEDID 117 +IL GP G GK+ +A + + + + ++ + + ++L+++ Sbjct: 41 MILYGPPGIGKTSIATAIAGSTSIAFRTLNAVIHNKKDMEAVAAEAKMSGQVILILDEVH 100 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 LD + +L+ A T + P + SR + ++ + + Sbjct: 101 RLDKGKQDFLLPY---LENGMIILIGATTANPYHAIN-PAIRSR---TQIFELKPLETEQ 153 Query: 178 LEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG- 229 ++ + + D R + +D + + ++ ++ LS Sbjct: 154 IKAALTRALQDEHRGLGGYEVTVDDEAMHHFANGCG---GDVRSALNALELAVLSTKADE 210 Query: 230 -----ITRSLAAEVLKE 241 IT + A E L++ Sbjct: 211 AGHIVITLAAAEECLQK 227 >gi|225436679|ref|XP_002262762.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 433 Score = 41.7 bits (97), Expect = 0.094, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 46/141 (32%), Gaps = 42/141 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS----------------ILID 106 P R +L GP G+GKS LA + ++ ST FS + L S Sbjct: 162 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFQMARES 221 Query: 107 TRKPVLLEDIDLLDFND--------------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 + +++ID L L + H L++ A P + Sbjct: 222 APSIIFIDEIDSLCGQRGESNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALD 281 Query: 153 ------------VCLPDLCSR 161 + LPDL +R Sbjct: 282 QAIRRRFDKRIYIPLPDLKAR 302 >gi|50310633|ref|XP_455337.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49644473|emb|CAG98045.1| KLLA0F05676p [Kluyveromyces lactis] Length = 830 Score = 41.7 bits (97), Expect = 0.094, Method: Composition-based stats. Identities = 35/205 (17%), Positives = 80/205 (39%), Gaps = 60/205 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + +++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 247 PPKGILMYGPPGTGKTLMARAVANETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEKN 306 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + +++ID + QL +++ + + +++ A P S Sbjct: 307 APAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNIVVIAATNRPNSIDPA 366 Query: 152 -----------GVCLPDLCSRLKAATVVKIS-----LPDDDFLEKVIVKMFADRQIFIDK 195 + +PD+ RL+ V++I L DD L K+ A+ ++ Sbjct: 367 LRRFGRFDREVDIGVPDVTGRLE---VLRIHTKNMKLADDVDL----EKLAAETHGYVGA 419 Query: 196 KLAAYIVQRMERSLVFAEKLVDKMD 220 +A+ S +++ +KMD Sbjct: 420 DIASLC------SEAAMQQIREKMD 438 Score = 37.1 bits (85), Expect = 2.1, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 16/74 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 PS+ V+ GP G+GK+ LA + + + SNI D Sbjct: 520 PSKGVLFYGPPGTGKTLLAKAVATEVSANFISVKGPELLSMWYGESESNIRDIFDKARAA 579 Query: 107 TRKPVLLEDIDLLD 120 V L+++D + Sbjct: 580 APTVVFLDELDSIA 593 >gi|313206012|ref|YP_004045189.1| DNA polymerase iii, subunits gamma and tau [Riemerella anatipestifer DSM 15868] gi|312445328|gb|ADQ81683.1| DNA polymerase III, subunits gamma and tau [Riemerella anatipestifer DSM 15868] Length = 559 Score = 41.7 bits (97), Expect = 0.095, Method: Composition-based stats. Identities = 33/208 (15%), Positives = 64/208 (30%), Gaps = 46/208 (22%) Query: 64 SRVVILVGPSGSGKSCLANIWS----DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 ++ ++ GP G GK+ A I + +K +T + ++ + + ++DI L Sbjct: 39 AQALLFCGPRGVGKTTCARILARKINEKDGATSEDGFSYNIFELDAASNNS--VDDIREL 96 Query: 120 D----------------FNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCL------ 155 ++ + N+ L T P L Sbjct: 97 TDQVRYAPQVGKYKVYIIDEVHMLSSQAFNAF-------LKTLEEPPAHAIFILATTEKH 149 Query: 156 ---PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 P + SR + + ++ + K+ I + I Q+ + Sbjct: 150 KIIPTILSR---CQIYDFKRITIEDIQGHLRKIADKEGISYEDDALFLIAQKAD---GAL 203 Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLK 240 + D L IT + AAEVL Sbjct: 204 RDALSIFDRLVTFTQKNITLAKAAEVLN 231 >gi|299753266|ref|XP_001833167.2| CHTF18 protein [Coprinopsis cinerea okayama7#130] gi|298410221|gb|EAU88856.2| CHTF18 protein [Coprinopsis cinerea okayama7#130] Length = 940 Score = 41.7 bits (97), Expect = 0.095, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 29/66 (43%), Gaps = 8/66 (12%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK--------PVLLED 115 + ++L GP G GK+ LA++ + ++ R N+ ++ V++++ Sbjct: 281 EKFLLLSGPPGLGKTTLAHVIAKQAGDARSGNVVDDRIRPTLEAGSTVGSTKPVLVVIDE 340 Query: 116 IDLLDF 121 ID Sbjct: 341 IDGATG 346 >gi|302546908|ref|ZP_07299250.1| AAA family ATPase [Streptomyces hygroscopicus ATCC 53653] gi|302464526|gb|EFL27619.1| AAA family ATPase [Streptomyces himastatinicus ATCC 53653] Length = 434 Score = 41.7 bits (97), Expect = 0.095, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 57/188 (30%), Gaps = 36/188 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 IL GP G GK+ +A + + ++ + F ++ + + + RK T L Sbjct: 53 AILWGPPGVGKTTIARLLA-RAGNLAFEPVSATFSGVA-ELRKVFAAAQRRRGIGQGTLL 110 Query: 127 F----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISL 172 F H N + + L+ T L SR V+ + Sbjct: 111 FVDEIHRFNRAQQDSFLPYVEDGTITLIGATTENPSFELNGA---LLSR---TQVLVLKR 164 Query: 173 PDDDFLEKVIVKM-------------FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 D+ L ++ + I + Y++ M L M Sbjct: 165 LDEAALSTLLHRAEQLTGHRLPLGDDARRALIAMADGDGRYLLN-MAEQLQALPDTETTM 223 Query: 220 DNLALSRG 227 D AL+ Sbjct: 224 DTTALAHH 231 >gi|303273262|ref|XP_003055992.1| predicted protein [Micromonas pusilla CCMP1545] gi|226462076|gb|EEH59368.1| predicted protein [Micromonas pusilla CCMP1545] Length = 439 Score = 41.7 bits (97), Expect = 0.095, Method: Composition-based stats. Identities = 27/188 (14%), Positives = 58/188 (30%), Gaps = 65/188 (34%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P V+ GP G+GK+ LA ++++ + I L + ++ Sbjct: 203 PKGVLC-YGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARLVRELFQLARSK 261 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQYDSS----LLMTARTF--- 147 +++D + + I+N + +D+ +LM Sbjct: 262 KACLIFFDEVDAIGGARFDDGQGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 321 Query: 148 -PVSW---------GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P LPDL SR + +I R + +++ + Sbjct: 322 DPALLRPGRLDRKVEFGLPDLDSR---TQIFRIHS----------------RSMAVERDI 362 Query: 198 AAYIVQRM 205 ++ R+ Sbjct: 363 RYELLSRL 370 >gi|145345157|ref|XP_001417088.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144577314|gb|ABO95381.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 169 Score = 41.7 bits (97), Expect = 0.095, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 26/66 (39%), Gaps = 4/66 (6%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +++ G G+GK+ LA+ + + + R A +ED D + ++ Sbjct: 6 PFILVTGVPGAGKTTLADALATRIDAKRIDVGALCAREGFHGAY----VEDADTHELDED 61 Query: 125 QLFHII 130 L + Sbjct: 62 ALLDRM 67 >gi|145343613|ref|XP_001416411.1| ATP/GTP-binding protein, putative [Ostreococcus lucimarinus CCE9901] gi|144576636|gb|ABO94704.1| ATP/GTP-binding protein, putative [Ostreococcus lucimarinus CCE9901] Length = 432 Score = 41.7 bits (97), Expect = 0.095, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%) Query: 66 VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125 V L+G SGSGK+ L N W + A + + + ++ +L+ D + Q Sbjct: 76 TVCLIGRSGSGKTHLLN-WLLRHDFDSKVEPALT-EQKMKESLTVTVLDSFDESIYWTPQ 133 Query: 126 LFHI 129 LFH+ Sbjct: 134 LFHL 137 >gi|89899601|ref|YP_522072.1| ATPase [Rhodoferax ferrireducens T118] gi|89344338|gb|ABD68541.1| ATPase [Rhodoferax ferrireducens T118] Length = 452 Score = 41.7 bits (97), Expect = 0.095, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 13/84 (15%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT-----RKPVLLEDID 117 R ++L GP+GSGK+ LA A S+ +I +P++++ Sbjct: 167 SGRPILLYGPAGSGKTYLAERLQRLITGAVAIPYAISVHGEVIRVFDAQCHRPLVVDGAP 226 Query: 118 LLDFNDTQLFHIINSIHQYDSSLL 141 + N +L Sbjct: 227 RAALD--------NRARPDARWVL 242 >gi|317486086|ref|ZP_07944936.1| hypothetical protein HMPREF0179_02291 [Bilophila wadsworthia 3_1_6] gi|316922659|gb|EFV43895.1| hypothetical protein HMPREF0179_02291 [Bilophila wadsworthia 3_1_6] Length = 884 Score = 41.7 bits (97), Expect = 0.095, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 65/193 (33%), Gaps = 39/193 (20%) Query: 47 SAIEQAVRLIDSWPSWPSRVVIL--VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL 104 + A L + +R + + GPS SGKS L + + + + + + Sbjct: 43 ESNRLARAL-RKEAATAARKMCVGVFGPSQSGKSYLISALAQDADGSLLTALGDESADF- 100 Query: 105 IDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK- 163 ++DI+ ++ + +T P + V L L S L Sbjct: 101 --------IQDINPAGGKEST---------GLVTRFTLTPSGAPAMFPVKLR-LLSELDI 142 Query: 164 --------AATVVKISLPDDDFLEKVIVKMFA------DRQIFIDKKLAAYIVQRMERSL 209 A ++ PD+D L + + R F + + + + + R+ Sbjct: 143 VKILTNTYYADCRHLTPPDEDALAARVDALAKKAKGEPWRASFSEDDMID-LKEYVTRNF 201 Query: 210 VFAEKLVDKMDNL 222 +V ++++L Sbjct: 202 RA-TAVVQRLEHL 213 >gi|300124005|emb|CBK25276.2| unnamed protein product [Blastocystis hominis] Length = 388 Score = 41.7 bits (97), Expect = 0.095, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 14/76 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G+GK+ +A + ++T +A SL + V+ E Sbjct: 166 VLLYGPPGTGKTLIAKALASSIKATFIKTVASSLIEKYVGESSRVVRE------------ 213 Query: 127 FHIINSIHQYDSSLLM 142 + N Q+ +++ Sbjct: 214 --LFNYARQHTPAVVF 227 >gi|242809506|ref|XP_002485383.1| mitochondrial AAA ATPase, putative [Talaromyces stipitatus ATCC 10500] gi|218716008|gb|EED15430.1| mitochondrial AAA ATPase, putative [Talaromyces stipitatus ATCC 10500] Length = 1433 Score = 41.7 bits (97), Expect = 0.095, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 61/171 (35%), Gaps = 35/171 (20%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK--------------- 109 ++L GP G+GK+ LA + +S +T + + + + Sbjct: 720 PGMLLYGPPGTGKTLLAKAVARESGATVLEVSGSDIYDMYVGEGEKNVKAIFTLAKKLSP 779 Query: 110 -PVLLEDIDLLDFNDTQL---F--H--IINSI-HQYDS-----SLLMTARTFPVSWGVCL 155 V +++ D + + Q F H +IN ++D + +M A P L Sbjct: 780 CVVFIDEADAIFGSRNQSRNRFSSHRELINQFLREWDGMNDMSAFIMVATNRP----FDL 835 Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206 D + + + LP + E ++ + Q+ LA + +R Sbjct: 836 DDAVL-RRLPRRLLVDLPVEQDREAILKIHLKNEQLDPSVDLAD-LARRTP 884 >gi|238607311|ref|XP_002396945.1| hypothetical protein MPER_02714 [Moniliophthora perniciosa FA553] gi|215470438|gb|EEB97875.1| hypothetical protein MPER_02714 [Moniliophthora perniciosa FA553] Length = 226 Score = 41.7 bits (97), Expect = 0.095, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + ++ GP G+GK+ LA + ++ + SL + I ++ + Sbjct: 161 PPKGCLMYGPPGTGKTLLARACAAQTNACYLKLAGPSLVQMFIGDGAKLVRD 212 >gi|208435780|pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of Atpgammas gi|208435781|pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of Atpgammas gi|208435782|pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of Atpgammas Length = 340 Score = 41.7 bits (97), Expect = 0.095, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 52/140 (37%), Gaps = 41/140 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P+ ++L GP G+GKS LA + ++ ST FS + L S + + ++ Sbjct: 68 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMAREN 127 Query: 113 ------LEDIDLLDFND------------TQLFHIINSI-HQYDSSLLMTARTFPVSWG- 152 ++ +D L T+L +N + + L++ A P Sbjct: 128 KPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDS 187 Query: 153 -----------VCLPDLCSR 161 + LPDL +R Sbjct: 188 AIRRRFERRIYIPLPDLAAR 207 >gi|188527230|ref|YP_001909917.1| recombination factor protein RarA [Helicobacter pylori Shi470] gi|188143470|gb|ACD47887.1| recombination factor protein RarA [Helicobacter pylori Shi470] Length = 391 Score = 41.7 bits (97), Expect = 0.095, Method: Composition-based stats. Identities = 31/189 (16%), Positives = 70/189 (37%), Gaps = 25/189 (13%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILI--------DTRKPVLLE 114 GP G GK+ LA I + F+ L+ + + + + ++ Sbjct: 38 PHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRLKLKNYQNTLLKPVIFID 97 Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 + L+ + I + D +L++ A T ++ + + SR + + +++ + Sbjct: 98 ETHRLNKTQQEFLLPI---MEKDHALILGASTQDPNYSLSHA-IRSR---SFIFELTPLN 150 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234 L+K+ K + I+ Y++ S A L++ +D A I + Sbjct: 151 KSDLDKLCAKALTLLKKQIEPGAKTYLLNN---SAGDARALLNLLDLSA-----KIEDPI 202 Query: 235 AAEVLKETQ 243 E L+ + Sbjct: 203 TLETLQSLR 211 >gi|167462709|ref|ZP_02327798.1| XkdC [Paenibacillus larvae subsp. larvae BRL-230010] Length = 273 Score = 41.7 bits (97), Expect = 0.095, Method: Composition-based stats. Identities = 18/121 (14%), Positives = 42/121 (34%), Gaps = 21/121 (17%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIA----------------KSLDSILIDT 107 S + L+G G+GK+ L ++ + + + Sbjct: 130 SNSIALLGRPGAGKTHLLMAVANNLLARGIGVVYFPYVEGFNELRKDLDQLDERVRRLQQ 189 Query: 108 RKPVLLEDI-----DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 + + ++D+ + ++ QLF IIN + +L+++ + SRL Sbjct: 190 AEVLFIDDLFKGRSEPTEWQKEQLFAIINYRNLQKLPMLISSERNFAQMVDIDEAIGSRL 249 Query: 163 K 163 + Sbjct: 250 R 250 >gi|148551048|ref|YP_001260478.1| IstB ATP binding domain-containing protein [Sphingomonas wittichii RW1] gi|148503459|gb|ABQ71711.1| IstB domain protein ATP-binding protein [Sphingomonas wittichii RW1] Length = 242 Score = 41.7 bits (97), Expect = 0.095, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 48/109 (44%), Gaps = 22/109 (20%) Query: 65 RVVILVGPSGSGKSCLANIWSDK-----SRSTRFSNI-------------AKSLDSILID 106 R ++LVG +G+GK+ LA+ + +R F+ + + + Sbjct: 99 RNIVLVGGTGTGKTHLASAIAASVIRAGARGRYFNTVDLVTQLEEETRIGKAGALAAQLR 158 Query: 107 TRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 + V+L+++ L F LFH+I+ +++ +S+++T W Sbjct: 159 RHELVVLDELGYLPFARSGGQLLFHLISKLYE-QTSVIITTNLTFGEWP 206 >gi|50547369|ref|XP_501154.1| YALI0B20834p [Yarrowia lipolytica] gi|49647020|emb|CAG83407.1| YALI0B20834p [Yarrowia lipolytica] Length = 1050 Score = 41.7 bits (97), Expect = 0.095, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 30/50 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S ST FS A SL S + + ++ Sbjct: 800 PARGMLLFGPPGTGKTMLARAVATESNSTFFSISASSLTSKFLGESEKLV 849 >gi|14349166|dbj|BAB60709.1| Werner helicase interacting protein [Homo sapiens] Length = 665 Score = 41.7 bits (97), Expect = 0.095, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 16/83 (19%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 + L GP G GK+ LA+I + S+ + S + + + D+ N+ Sbjct: 262 PSLNLWGPPGCGKTTLAHIIASNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 316 Query: 125 QLF-----------HIINSIHQY 136 F H N Q Sbjct: 317 SFFKRKTILFIDEIHRFNKSQQD 339 >gi|330881213|gb|EGH15362.1| recombination factor protein RarA [Pseudomonas syringae pv. glycinea str. race 4] Length = 195 Score = 41.7 bits (97), Expect = 0.096, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 51/160 (31%), Gaps = 27/160 (16%) Query: 57 DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 ++ +I GP G GK+ LA + + S + + A I V + Sbjct: 40 EALEQGALHSMIFWGPPGVGKTTLARLLAKVSDAHFETVSAVLAGVKEIRQAVEVAKQQA 99 Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162 T LF H N Q D +L+ T L SR Sbjct: 100 GQYGKR-TILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154 Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKK 196 A V + D+ L K++ + + RQ+ + + Sbjct: 155 --ARVYVLKSLDEGALRKLVHRALTEERGLGKRQLTLSDE 192 >gi|328864072|gb|EGG13171.1| cell division cycle protein cdc48 [Melampsora larici-populina 98AG31] Length = 820 Score = 41.7 bits (97), Expect = 0.096, Method: Composition-based stats. Identities = 36/201 (17%), Positives = 79/201 (39%), Gaps = 52/201 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 243 PPRGILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 302 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + +++ID + QL +++ + + ++M A P S Sbjct: 303 APAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGLKARSNVVVMAATNRPNSIDPA 362 Query: 152 -----------GVCLPDLCSRLKAATVVKISLPDDDFLEKV-IVKMFADRQIFIDKKLAA 199 V +PD RL+ +++I + E V + K+ AD ++ +A+ Sbjct: 363 LRRFGRFDREVDVGIPDATGRLE---ILRIHTKNMKLGEDVDLEKIAADTHGYVGSDVAS 419 Query: 200 YIVQRMERSLVFAEKLVDKMD 220 S +++ +KMD Sbjct: 420 LC------SEAAMQQIREKMD 434 Score = 38.2 bits (88), Expect = 1.0, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 27/57 (47%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G+GK+ LA +++ ++ S L ++ + + + D Sbjct: 516 PSKGVLFYGPPGTGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKA 572 >gi|271961638|ref|YP_003335834.1| cell division cycle protein 48-related protein [Streptosporangium roseum DSM 43021] gi|270504813|gb|ACZ83091.1| cell division cycle protein 48-related protein [Streptosporangium roseum DSM 43021] Length = 448 Score = 41.7 bits (97), Expect = 0.096, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 21/47 (44%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109 V+L GP G+GK+ LA + + + + + + I + + Sbjct: 201 AGGGVLLYGPPGAGKTHLARAAAGELGAAFVNVGLADILDMYIGSSE 247 >gi|195150721|ref|XP_002016299.1| GL11509 [Drosophila persimilis] gi|194110146|gb|EDW32189.1| GL11509 [Drosophila persimilis] Length = 626 Score = 41.7 bits (97), Expect = 0.096, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 78/201 (38%), Gaps = 52/201 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 234 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 293 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148 + + +++ID + QL +++ + + ++M A P Sbjct: 294 SPAIIFIDEIDAIAPKRDKTHGEVERRIVSQLLTLMDGMKKSSHLIVMAATNRPNSIDPA 353 Query: 149 --------VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV-IVKMFADRQIFIDKKLAA 199 + +PD RL+ V++I + E V + ++ A+ + LA+ Sbjct: 354 LRRFGRFDREIDIGIPDATGRLE---VLRIHTKNMKLHEDVDLEQIAAETHGHVGADLAS 410 Query: 200 YIVQRMERSLVFAEKLVDKMD 220 S +++ +KMD Sbjct: 411 LC------SEAALQQIREKMD 425 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 27/57 (47%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA +++ ++ S L ++ + + + +D Sbjct: 507 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDILDKA 563 >gi|162146236|ref|YP_001600695.1| tranposase [Gluconacetobacter diazotrophicus PAl 5] gi|162149567|ref|YP_001604028.1| transposase [Gluconacetobacter diazotrophicus PAl 5] gi|209544802|ref|YP_002277031.1| IstB domain-containing protein ATP-binding protein [Gluconacetobacter diazotrophicus PAl 5] gi|161784811|emb|CAP54354.1| putative tranposase [Gluconacetobacter diazotrophicus PAl 5] gi|161788144|emb|CAP57749.1| putative transposase [Gluconacetobacter diazotrophicus PAl 5] gi|209532479|gb|ACI52416.1| IstB domain protein ATP-binding protein [Gluconacetobacter diazotrophicus PAl 5] Length = 259 Score = 41.7 bits (97), Expect = 0.096, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 58/145 (40%), Gaps = 26/145 (17%) Query: 32 FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--VILVGPSGSGKSCLANIWSDKS- 88 FP ++ D E VR + + R V+L+G G+GK+ LA + ++ Sbjct: 69 FPAYKDLAGFDFSAAEVNEAMVRQL-HAGDFIDRADNVVLIGGPGTGKTHLATALAVQAI 127 Query: 89 -------RSTRFSNIAKSLDSILIDTRKPVLLE---DIDLLDFND-----------TQLF 127 R ++ +L+ R + E +DL+ ++ LF Sbjct: 128 EHHRKKIRFWSTVDLVNALEQEKTANRAGQIAERLLRLDLVILDELGYLPFSASGGALLF 187 Query: 128 HIINSIHQYDSSLLMTARTFPVSWG 152 H+++ +++ +S+++T WG Sbjct: 188 HLLSRLYER-TSVIITTNLSFSEWG 211 >gi|156842059|ref|XP_001644399.1| hypothetical protein Kpol_1064p22 [Vanderwaltozyma polyspora DSM 70294] gi|156115041|gb|EDO16541.1| hypothetical protein Kpol_1064p22 [Vanderwaltozyma polyspora DSM 70294] Length = 432 Score = 41.7 bits (97), Expect = 0.096, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 23/52 (44%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + + + A + I ++ E Sbjct: 209 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIRE 260 >gi|149237877|ref|XP_001524815.1| vacuolar protein sorting-associated protein VPS4 [Lodderomyces elongisporus NRRL YB-4239] gi|146451412|gb|EDK45668.1| vacuolar protein sorting-associated protein VPS4 [Lodderomyces elongisporus NRRL YB-4239] Length = 487 Score = 41.7 bits (97), Expect = 0.096, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 54/143 (37%), Gaps = 43/143 (30%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P+ ++L GP G+GKS LA + ++ ST FS + L S + + ++ Sbjct: 212 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESERLVKQLFTMARES 271 Query: 113 ------LEDIDLLDFND------------TQLFHIINSI-HQYDSSLLMTARTFPVSWG- 152 ++++D L T+L +N + + L++ A P Sbjct: 272 KPSIIFIDEVDALCGPRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDA 331 Query: 153 -----------VCLPDL--CSRL 162 + LPD+ SR+ Sbjct: 332 AIRRRFERRIYIPLPDVEARSRM 354 >gi|14521065|ref|NP_126540.1| cell division protein CDC48 [Pyrococcus abyssi GE5] gi|5458282|emb|CAB49771.1| ATPase of the AAA+ family [Pyrococcus abyssi GE5] Length = 363 Score = 41.7 bits (97), Expect = 0.096, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 16/124 (12%) Query: 50 EQAVRL-IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTR 108 QA+ L I P P + ++L GP G+GKS LA+ ++ +T FS A L S Sbjct: 106 AQAIGLSIAKSPIEPPQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGES 165 Query: 109 KPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWG-VCLPDLCSRLKAATV 167 ++ + LF + Q S++ ++ V L D R+ + Sbjct: 166 SKLI-----------SALFSL---ARQLSPSVIFIDEVDSLTMKRVSLDDAARRMIGTLL 211 Query: 168 VKIS 171 ++ Sbjct: 212 AEMD 215 >gi|328881973|emb|CCA55212.1| putative ATP-binding protein [Streptomyces venezuelae ATCC 10712] Length = 491 Score = 41.7 bits (97), Expect = 0.097, Method: Composition-based stats. Identities = 41/199 (20%), Positives = 64/199 (32%), Gaps = 42/199 (21%) Query: 7 DYSFFVPDKQKNDQPKNKEEQLF--FSFPRCLGISRD-DLLV---HSAIEQAVRLIDSW- 59 + PD Q+ + QL P + DLL+ + A Q L +W Sbjct: 123 GWDILTPDPQEVCWRRT---QLTGELPLPVKDTDGKGIDLLMRLCNFANAQTESLAIAWL 179 Query: 60 -----PSWPSRVVILVGPSGSGKSC----LANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110 PS P L GP G+GKS L I + R + + + Sbjct: 180 IGCLGPSVPVPAPFLTGPQGAGKSTGARMLLRIIEGMTSDLRRAPKDEENLIAAVAAGWV 239 Query: 111 VLLEDIDLLDFN---------------DTQLFHIINSIHQY-DSSLLMTARTFPVSWGVC 154 L+++ L + LF + + LL+T + GV Sbjct: 240 TALDNLSHLGPDLSDLMCCIVTGAETIKRALFTDGDVVRSRYRKPLLLTG----IDVGVI 295 Query: 155 LPDLCSRLKAATVVKISLP 173 PDL RL +++ P Sbjct: 296 RPDLAERL---LPLRLERP 311 >gi|325963037|ref|YP_004240943.1| ATPase [Arthrobacter phenanthrenivorans Sphe3] gi|323469124|gb|ADX72809.1| putative ATPase [Arthrobacter phenanthrenivorans Sphe3] Length = 345 Score = 41.7 bits (97), Expect = 0.097, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 12/98 (12%) Query: 67 VILVGPSGSGKSC-LANIWSDKSR----------STRFSNIAKSLDSILIDTRKPVLLED 115 + L G G GK+ LA++W + ++ + + K V +++ Sbjct: 83 IYLDGGFGVGKTHLLASLWHASPGPKAFGTFVEYTNLVGALSFRKTVEALSSYKLVCIDE 142 Query: 116 IDLLDFNDTQLFH-IINSIHQYDSSLLMTARTFPVSWG 152 +L D DT L ++ + L T+ T P S G Sbjct: 143 FELDDPGDTVLMSRLMRELADAGVKLAATSNTLPGSLG 180 >gi|294900019|ref|XP_002776859.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] gi|239884060|gb|EER08675.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] Length = 901 Score = 41.7 bits (97), Expect = 0.097, Method: Composition-based stats. Identities = 11/31 (35%), Positives = 18/31 (58%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 ++ ++L GP G GKS LA I + + +T Sbjct: 587 AKSILLYGPKGCGKSLLARIIATEVGATFID 617 >gi|255713900|ref|XP_002553232.1| KLTH0D11990p [Lachancea thermotolerans] gi|238934612|emb|CAR22794.1| KLTH0D11990p [Lachancea thermotolerans] Length = 433 Score = 41.7 bits (97), Expect = 0.097, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 23/52 (44%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + + + A + I ++ E Sbjct: 210 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIRE 261 >gi|168988715|pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer Length = 331 Score = 41.7 bits (97), Expect = 0.097, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 53/140 (37%), Gaps = 41/140 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P+ ++L GP G+GKS LA + ++ ST FS + L S + + ++ Sbjct: 59 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMAREN 118 Query: 113 ------LEDIDLLDFND------------TQLFHIINSI-HQYDSSLLMTARTFPVSWG- 152 ++++D L T+L +N + + L++ A P Sbjct: 119 KPSIIFIDEVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDS 178 Query: 153 -----------VCLPDLCSR 161 + LPDL +R Sbjct: 179 AIRRRFERRIYIPLPDLAAR 198 >gi|50305331|ref|XP_452625.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49641758|emb|CAH01476.1| KLLA0C09592p [Kluyveromyces lactis] Length = 434 Score = 41.7 bits (97), Expect = 0.097, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 23/52 (44%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + + + A + I ++ E Sbjct: 211 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIRE 262 >gi|88856891|ref|ZP_01131543.1| ATP/GTP-binding integral membrane protein [marine actinobacterium PHSC20C1] gi|88813859|gb|EAR23729.1| ATP/GTP-binding integral membrane protein [marine actinobacterium PHSC20C1] Length = 336 Score = 41.7 bits (97), Expect = 0.097, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 40/100 (40%), Gaps = 12/100 (12%) Query: 65 RVVILVGPSGSGKSC-LANIWSDKSR----------STRFSNIAKSLDSILIDTRKPVLL 113 V L G G GK+ LA +W + + + + L+ V + Sbjct: 81 PGVYLDGGFGVGKTHLLAALWHQMAGRKYFGTFIEYTALVGAVGYAPAVQLLKGASLVCI 140 Query: 114 EDIDLLDFNDTQLFH-IINSIHQYDSSLLMTARTFPVSWG 152 ++ +L D DT+L +++ + + + T+ T P + G Sbjct: 141 DEFELDDPGDTRLISRLLSELVASGTKIAATSNTPPNALG 180 >gi|109898773|ref|YP_662028.1| recombination factor protein RarA [Pseudoalteromonas atlantica T6c] gi|109701054|gb|ABG40974.1| Recombination protein MgsA [Pseudoalteromonas atlantica T6c] Length = 445 Score = 41.7 bits (97), Expect = 0.098, Method: Composition-based stats. Identities = 41/200 (20%), Positives = 67/200 (33%), Gaps = 38/200 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125 +IL GP G+GK+ LA I + + A + I + +E N + Sbjct: 55 MILWGPPGTGKTTLAEIIAMHCDAHIERISAVTSGVKDIRS----AIEQAKQNALNQAKR 110 Query: 126 --LF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVK 169 LF H N Q D ++ T L SR A V Sbjct: 111 TILFVDEVHRFNKSQQDAFLPFIEDGTITFIGATTENPSFELNGA---LLSR---ARVYV 164 Query: 170 ISLPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 + ++ L + + D R + I+ K A + E + A +L++ ++ Sbjct: 165 LKSLTENDLTDIAKRALTDEPRGLGQLALQIEDKGIALL---TELAGGDARRLLNYIELA 221 Query: 223 A-LSRGMGITRSLAAEVLKE 241 A S IT E + E Sbjct: 222 ADFSTEGKITLEAIKEAVGE 241 >gi|47197726|emb|CAF89426.1| unnamed protein product [Tetraodon nigroviridis] Length = 230 Score = 41.7 bits (97), Expect = 0.098, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 30/50 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S +T F+ A SL S + + ++ Sbjct: 131 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 180 >gi|85716443|ref|ZP_01047415.1| putative transposase [Nitrobacter sp. Nb-311A] gi|85696800|gb|EAQ34686.1| putative transposase [Nitrobacter sp. Nb-311A] Length = 287 Score = 41.7 bits (97), Expect = 0.098, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 22/110 (20%) Query: 64 SRVVILVGPSGSGKSCLANIWS-------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 R V+LVG +G+GK+ LA + + R ++ L+ + R+ L E + Sbjct: 98 QRNVVLVGGTGTGKTHLAIAIARSCIRSGARGRFYNVVDLVNRLEIETRNGRQGRLAEHL 157 Query: 117 ---DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 D + ++ LFH+++ +++ +S+++T W Sbjct: 158 TRMDFIVLDELGYLPFAQSGGQLLFHLVSRLYER-ASVIVTTNLAFGEWP 206 >gi|71002728|ref|XP_756045.1| cell division control protein Cdc48 [Aspergillus fumigatus Af293] gi|28394450|gb|AAM08677.1| Cdc48p [Aspergillus fumigatus] gi|66853683|gb|EAL94007.1| cell division control protein Cdc48 [Aspergillus fumigatus Af293] gi|159130099|gb|EDP55213.1| cell division control protein Cdc48 [Aspergillus fumigatus A1163] Length = 819 Score = 41.7 bits (97), Expect = 0.098, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 49/121 (40%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 255 PPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 314 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + + ++M A P S Sbjct: 315 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSIDPA 374 Query: 155 L 155 L Sbjct: 375 L 375 Score = 37.1 bits (85), Expect = 2.1, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 60/175 (34%), Gaps = 41/175 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 PSR V+ GP G+GK+ LA +++ + SNI D Sbjct: 529 PSRGVLFYGPPGTGKTMLAKAVANECAANFISVKGPELLSMWFGESESNIRDIFDKARAA 588 Query: 107 TRKPVLLEDIDLLDFND---------------TQLFHIINSIHQYDSSLLMTARTFPVSW 151 V L+++D + + QL ++ + + ++ A P Sbjct: 589 APCVVFLDELDSIAKSRGGSVGDAGGASDRVVNQLLTEMDGMTSKKNVFVIGATNRPEQL 648 Query: 152 GVCL--PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQ 203 L P RL T+V + LPD E ++ R+ + + +I Sbjct: 649 DAALVRP---GRLD--TLVYVPLPDQASRESIL--RAQLRKTPVAPDVDIPFIAS 696 >gi|224132668|ref|XP_002321379.1| predicted protein [Populus trichocarpa] gi|222868375|gb|EEF05506.1| predicted protein [Populus trichocarpa] Length = 390 Score = 41.7 bits (97), Expect = 0.099, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 49/150 (32%), Gaps = 35/150 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN----------------IAKSLDSILID 106 P + V+L GP G+GK+ LA + +S + + +A Sbjct: 118 PQKGVLLYGPPGTGKTMLAKAIARESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKL 177 Query: 107 TRKPVLLEDIDLLDFNDTQLFH--IINS------------IHQYDSSLLMTARTFPVSWG 152 + ++++D H + N Q +++ A P Sbjct: 178 QPAIIFIDEVDSFLGQRRTTDHEALTNMKTEFMALWDGFTTDQNAQVMVLAATNRPSELD 237 Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 + L RL A +I +PD +++ Sbjct: 238 EAI--LR-RLPQA--FEIGMPDQRERAEIL 262 >gi|208435779|pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound State Length = 322 Score = 41.7 bits (97), Expect = 0.099, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 52/140 (37%), Gaps = 41/140 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P+ ++L GP G+GKS LA + ++ ST FS + L S + + ++ Sbjct: 50 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMAREN 109 Query: 113 ------LEDIDLLDFND------------TQLFHIINSI-HQYDSSLLMTARTFPVSWG- 152 ++ +D L T+L +N + + L++ A P Sbjct: 110 KPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDS 169 Query: 153 -----------VCLPDLCSR 161 + LPDL +R Sbjct: 170 AIRRRFERRIYIPLPDLAAR 189 >gi|194870717|ref|XP_001972707.1| GG15672 [Drosophila erecta] gi|190654490|gb|EDV51733.1| GG15672 [Drosophila erecta] Length = 1006 Score = 41.7 bits (97), Expect = 0.099, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 28/110 (25%) Query: 47 SAIEQAVRLIDSWPSWPSRV--------------VILVGPSGSGKSCLANIWSDKSRSTR 92 +E V +++ WPSR V+L GP G+GK+ L Sbjct: 723 PGLESVVGVLEEVLMWPSRYPTIFNASPLRNQAGVLLYGPPGTGKTYL------------ 770 Query: 93 FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLM 142 + +A S + +I + P LL + ++ + ++ N +L Sbjct: 771 VAQLATSWNLRIISVKGPELL--AKYIGQSEENVRNLFNRARSARPCVLF 818 >gi|162147376|ref|YP_001601837.1| IstB-like ATP-binding protein [Gluconacetobacter diazotrophicus PAl 5] gi|162148206|ref|YP_001602667.1| transposase [Gluconacetobacter diazotrophicus PAl 5] gi|162148387|ref|YP_001602848.1| IstB-like ATP-binding protein [Gluconacetobacter diazotrophicus PAl 5] gi|162148484|ref|YP_001602945.1| transposase [Gluconacetobacter diazotrophicus PAl 5] gi|209542828|ref|YP_002275057.1| IstB domain-containing protein ATP-binding protein [Gluconacetobacter diazotrophicus PAl 5] gi|209543940|ref|YP_002276169.1| IstB domain-containing protein ATP-binding protein [Gluconacetobacter diazotrophicus PAl 5] gi|161785953|emb|CAP55533.1| IstB-like ATP-binding protein [Gluconacetobacter diazotrophicus PAl 5] gi|161786783|emb|CAP56366.1| putative transposase [Gluconacetobacter diazotrophicus PAl 5] gi|161786964|emb|CAP56549.1| putative IstB-like ATP-binding protein [Gluconacetobacter diazotrophicus PAl 5] gi|161787061|emb|CAP56647.1| putative transposase [Gluconacetobacter diazotrophicus PAl 5] gi|209530505|gb|ACI50442.1| IstB domain protein ATP-binding protein [Gluconacetobacter diazotrophicus PAl 5] gi|209531617|gb|ACI51554.1| IstB domain protein ATP-binding protein [Gluconacetobacter diazotrophicus PAl 5] Length = 259 Score = 41.7 bits (97), Expect = 0.099, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 58/145 (40%), Gaps = 26/145 (17%) Query: 32 FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--VILVGPSGSGKSCLANIWSDKS- 88 FP ++ D E VR + + R V+L+G G+GK+ LA + ++ Sbjct: 69 FPAYKDLAGFDFSAAEVNEAMVRQL-HAGDFIDRADNVVLIGGPGTGKTHLATALAVQAI 127 Query: 89 -------RSTRFSNIAKSLDSILIDTRKPVLLE---DIDLLDFND-----------TQLF 127 R ++ +L+ R + E +DL+ ++ LF Sbjct: 128 EHHRKKIRFWSTVDLVNALEQEKTANRAGQIAERLLRLDLVILDELGYLPFSASGGALLF 187 Query: 128 HIINSIHQYDSSLLMTARTFPVSWG 152 H+++ +++ +S+++T WG Sbjct: 188 HLLSRLYER-TSVIITTNLSFSEWG 211 >gi|121705368|ref|XP_001270947.1| vacuolar sorting ATPase Vps4, putative [Aspergillus clavatus NRRL 1] gi|119399093|gb|EAW09521.1| vacuolar sorting ATPase Vps4, putative [Aspergillus clavatus NRRL 1] Length = 434 Score = 41.7 bits (97), Expect = 0.099, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 14/80 (17%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + ++L GP G+GKS LA + ++ ST FS + L S + + ++ Sbjct: 164 PWKGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESERLV---------- 213 Query: 123 DTQLFHIINSIHQYDSSLLM 142 QLF N + +++ Sbjct: 214 -KQLF---NMARENKPAIIF 229 >gi|109018127|ref|XP_001096523.1| PREDICTED: nuclear VCP-like isoform 3 [Macaca mulatta] Length = 750 Score = 41.7 bits (97), Expect = 0.099, Method: Composition-based stats. Identities = 26/168 (15%), Positives = 58/168 (34%), Gaps = 42/168 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P R V+L GP G GK+ LA+ + + A + + + + Sbjct: 191 PPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFEQAVSN 250 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151 + +++ID + QL + N++ L++ A P S Sbjct: 251 APCIIFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSL 310 Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKK 196 L +A + + +P + E+++ + R++ + + Sbjct: 311 DPALR------RAGRFDREICLGIPGEASRERILQTLC--RKLRLPQA 350 Score = 38.6 bits (89), Expect = 0.90, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 51/164 (31%), Gaps = 37/164 (22%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109 P+ V+ L GP G GK+ LA +++S S L ++ + + Sbjct: 509 PAGVL-LAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNS 567 Query: 110 -PVLL--EDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWG-- 152 P ++ +++D L QL ++ + +M A P Sbjct: 568 APCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPA 627 Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196 + P RL V + P D I+K Sbjct: 628 ILRP---GRLDKTLFVGLPPPTDRL---AILKTITKNGTKPPLD 665 >gi|73668447|ref|YP_304462.1| cell division control protein 48 [Methanosarcina barkeri str. Fusaro] gi|72395609|gb|AAZ69882.1| cell division control protein 48 [Methanosarcina barkeri str. Fusaro] Length = 754 Score = 41.7 bits (97), Expect = 0.099, Method: Composition-based stats. Identities = 22/164 (13%), Positives = 59/164 (35%), Gaps = 39/164 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + V+L GP G+GK+ +A + ++ + + + + + Sbjct: 209 PPKGVLLHGPPGTGKTLIAKAVASETDANFITISGPEIVSKYYGESEQKLREIFEEAEKE 268 Query: 107 TRKPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ ++ +++ A P S Sbjct: 269 APSIIFIDEIDSIAPKRGEVTGELERRVVAQLLSLMDGLNSRGEVVVIAATNRPNSIDEA 328 Query: 155 LPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDK 195 L + ++I +PD + ++++ + R + I Sbjct: 329 LR------RGGRFDREIEIGIPDRNGRKQIL--LIHTRGMPIQD 364 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P R V+L GP G+GK+ LA + +S + S L S + + + E Sbjct: 481 PPRGVLLFGPPGTGKTLLAKAVASESEANFISIKGPELLSKYVGESERAVRE 532 >gi|67469139|ref|XP_650561.1| ATPase, AAA family protein [Entamoeba histolytica HM-1:IMSS] gi|56467200|gb|EAL45175.1| ATPase, AAA family protein [Entamoeba histolytica HM-1:IMSS] Length = 622 Score = 41.7 bits (97), Expect = 0.099, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 56/167 (33%), Gaps = 40/167 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS----------------ILID 106 P R ++L GP G GK+ LA + + A L Sbjct: 74 PPRGILLHGPPGCGKTLLAKAIAGEVGVAFIEVSATELVGGMSGESESKIRDLFQLASQR 133 Query: 107 TRKPVLLEDIDLL------DFND------TQLFHIINSIHQYDSSLLMTART-FPVSWGV 153 + +++ID + + QL ++ + + D +++ T P S Sbjct: 134 APALLFIDEIDAITPKRDNAQREMERRIVAQLLSSLDKLSEADKPVIVIGATNRPDSLDP 193 Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L +A + + +P + +++ KM + + ID + Sbjct: 194 ALR------RAGRFDREIALGIPSESQRRQILDKMMVN--LKIDSAV 232 >gi|330916411|ref|XP_003297409.1| hypothetical protein PTT_07804 [Pyrenophora teres f. teres 0-1] gi|311329919|gb|EFQ94491.1| hypothetical protein PTT_07804 [Pyrenophora teres f. teres 0-1] Length = 789 Score = 41.7 bits (97), Expect = 0.099, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 11/67 (16%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P+R ++L GP G+GK+ LA + +SRST F+ A SL S + + ++ Sbjct: 533 PARGMLLFGPPGTGKTMLARAVATESRSTFFAISASSLTSKFLGESEKLV---------- 582 Query: 123 DTQLFHI 129 LF + Sbjct: 583 -RALFQL 588 >gi|294896442|ref|XP_002775559.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] gi|239881782|gb|EER07375.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] Length = 459 Score = 41.7 bits (97), Expect = 0.099, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 23/38 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P + ++L GP G+GKS LA + ++ +T FS + L Sbjct: 187 PWKGILLYGPPGTGKSYLAKACATEADATFFSVSSSDL 224 >gi|260945583|ref|XP_002617089.1| hypothetical protein CLUG_02533 [Clavispora lusitaniae ATCC 42720] gi|238848943|gb|EEQ38407.1| hypothetical protein CLUG_02533 [Clavispora lusitaniae ATCC 42720] Length = 548 Score = 41.7 bits (97), Expect = 0.099, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 16/30 (53%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 +IL GP G GK+ LA+I + ++ Sbjct: 55 PSMILYGPPGVGKTTLAHILAAETNHVFLE 84 >gi|227892533|ref|ZP_04010338.1| recombination ATPase [Lactobacillus ultunensis DSM 16047] gi|227865654|gb|EEJ73075.1| recombination ATPase [Lactobacillus ultunensis DSM 16047] Length = 441 Score = 41.7 bits (97), Expect = 0.099, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 10/78 (12%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID--LLDFN 122 +IL GP G+GK+ LA I + +++ + A + I ++E+ + Sbjct: 53 PSLILWGPPGTGKTTLAEIIAKHTKAHFITFSAVTSSIKDIRK----IMEEAESNRQFGE 108 Query: 123 DTQLF----HIINSIHQY 136 T +F H N Q Sbjct: 109 KTIVFIDEIHRFNKAQQD 126 >gi|212716947|ref|ZP_03325075.1| hypothetical protein BIFCAT_01891 [Bifidobacterium catenulatum DSM 16992] gi|212660232|gb|EEB20807.1| hypothetical protein BIFCAT_01891 [Bifidobacterium catenulatum DSM 16992] Length = 464 Score = 41.7 bits (97), Expect = 0.099, Method: Composition-based stats. Identities = 43/195 (22%), Positives = 76/195 (38%), Gaps = 37/195 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 +IL GP G GK+ LA I + +S ++ K + +L ++ E + + F Sbjct: 62 IILFGPPGVGKTTLAYIVAKQSGRVFEELSAVTSGVKDVRDVLRRAHDRLVAEGKETVLF 121 Query: 122 NDTQLFHIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 D + +LL + A T S+ V P L SR + VVK+ Sbjct: 122 IDE----VHRFSKSQQDALLPSVENRDVTFIAATTENPSFSVIKP-LLSR---SVVVKLE 173 Query: 172 LPDDDFLEKVIVKMF-ADRQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA--- 223 + D L+ +I + ++ + I+ + IV RM + A K + ++ A Sbjct: 174 SLEPDDLKTLINRAIESEYGLKNEVKINDEAVDEIV-RM--AGGDARKTLTILEAAAGAL 230 Query: 224 ---LSRGMGITRSLA 235 +R G R + Sbjct: 231 TGDKARKKGAKRPII 245 >gi|119492027|ref|XP_001263508.1| vacuolar sorting ATPase Vps4, putative [Neosartorya fischeri NRRL 181] gi|119411668|gb|EAW21611.1| vacuolar sorting ATPase Vps4, putative [Neosartorya fischeri NRRL 181] Length = 435 Score = 41.7 bits (97), Expect = 0.099, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 14/80 (17%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + ++L GP G+GKS LA + ++ ST FS + L S + + ++ Sbjct: 165 PWKGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESERLV---------- 214 Query: 123 DTQLFHIINSIHQYDSSLLM 142 QLF N + +++ Sbjct: 215 -KQLF---NMARENKPAIIF 230 >gi|114654361|ref|XP_001142567.1| PREDICTED: similar to P26s4 isoform 2 [Pan troglodytes] Length = 399 Score = 41.7 bits (97), Expect = 0.099, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 218 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 269 >gi|115391273|ref|XP_001213141.1| hypothetical protein ATEG_03963 [Aspergillus terreus NIH2624] gi|114194065|gb|EAU35765.1| hypothetical protein ATEG_03963 [Aspergillus terreus NIH2624] Length = 531 Score = 41.7 bits (97), Expect = 0.099, Method: Composition-based stats. Identities = 33/220 (15%), Positives = 73/220 (33%), Gaps = 35/220 (15%) Query: 44 LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS--------- 94 LV LI+ ++L G G+GK+ +A + + S Sbjct: 139 LVGP-NGVLRGLIEQDR---VPSMVLWGGPGTGKTTIARVIASMVGSRFVEINSTSTGVA 194 Query: 95 ----NIAKSLDSILIDTRKPVLL-EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPV 149 A++ + + RK ++ ++I + +F + L+ A T Sbjct: 195 ECKKIFAEAKSELGLTGRKTIIFCDEIHRFSKSQQDVFL---GPVESGQVTLIGATTENP 251 Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ------IFIDKKLAAYIVQ 203 S+ V L SR ++ D+ ++ ++ + +D +L Y+ + Sbjct: 252 SFKVQSA-LLSR---CRTFTLAKLTDEDVKSILNRALQVEGPNYSPSALVDDELITYLAK 307 Query: 204 RMERSLVFAEKLVDKMDNLALSRGMG-ITRSLAAEVLKET 242 + A ++ ++ IT+ L +T Sbjct: 308 FSD---GDARTSLNLLELAMDLSKRPDITKEELKRSLTKT 344 >gi|85713846|ref|ZP_01044836.1| putative transposase [Nitrobacter sp. Nb-311A] gi|85714525|ref|ZP_01045513.1| putative transposase [Nitrobacter sp. Nb-311A] gi|85715687|ref|ZP_01046667.1| putative transposase [Nitrobacter sp. Nb-311A] gi|85716293|ref|ZP_01047267.1| putative transposase [Nitrobacter sp. Nb-311A] gi|85716640|ref|ZP_01047610.1| putative transposase [Nitrobacter sp. Nb-311A] gi|85716809|ref|ZP_01047776.1| putative transposase [Nitrobacter sp. Nb-311A] gi|85717285|ref|ZP_01048240.1| putative transposase [Nitrobacter sp. Nb-311A] gi|85717424|ref|ZP_01048374.1| putative transposase [Nitrobacter sp. Nb-311A] gi|85717452|ref|ZP_01048401.1| putative transposase [Nitrobacter sp. Nb-311A] gi|85717696|ref|ZP_01048632.1| putative transposase [Nitrobacter sp. Nb-311A] gi|85695493|gb|EAQ33415.1| putative transposase [Nitrobacter sp. Nb-311A] gi|85695754|gb|EAQ33663.1| putative transposase [Nitrobacter sp. Nb-311A] gi|85695779|gb|EAQ33687.1| putative transposase [Nitrobacter sp. Nb-311A] gi|85695926|gb|EAQ33829.1| putative transposase [Nitrobacter sp. Nb-311A] gi|85696416|gb|EAQ34307.1| putative transposase [Nitrobacter sp. Nb-311A] gi|85696641|gb|EAQ34529.1| putative transposase [Nitrobacter sp. Nb-311A] gi|85696965|gb|EAQ34849.1| putative transposase [Nitrobacter sp. Nb-311A] gi|85697626|gb|EAQ35503.1| putative transposase [Nitrobacter sp. Nb-311A] gi|85698972|gb|EAQ36841.1| putative transposase [Nitrobacter sp. Nb-311A] gi|85699750|gb|EAQ37617.1| putative transposase [Nitrobacter sp. Nb-311A] Length = 286 Score = 41.7 bits (97), Expect = 0.099, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 22/110 (20%) Query: 64 SRVVILVGPSGSGKSCLANIWS-------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 R V+LVG +G+GK+ LA + + R ++ L+ + R+ L E + Sbjct: 98 QRNVVLVGGTGTGKTHLAIAIARSCIRSGARGRFYNVVDLVNRLEIETRNGRQGRLAEHL 157 Query: 117 ---DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 D + ++ LFH+++ +++ +S+++T W Sbjct: 158 TRMDFIVLDELGYLPFAQSGGQLLFHLVSRLYER-ASVIVTTNLAFGEWP 206 >gi|308159198|gb|EFO61741.1| Katanin [Giardia lamblia P15] Length = 509 Score = 41.7 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 16/40 (40%), Positives = 24/40 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P R V+L GP G+GK+ LA + ++ T FS A ++S Sbjct: 248 PWRGVLLFGPPGTGKTLLAKAIAMQAGFTFFSASASVIES 287 >gi|302784987|ref|XP_002974265.1| hypothetical protein SELMODRAFT_149735 [Selaginella moellendorffii] gi|300157863|gb|EFJ24487.1| hypothetical protein SELMODRAFT_149735 [Selaginella moellendorffii] Length = 340 Score = 41.7 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 30/174 (17%), Positives = 64/174 (36%), Gaps = 36/174 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V+L GP G+GK+ LA + ++R+ + SL S + + ++ Sbjct: 85 PQKGVLLYGPPGTGKTLLAKALAKEARAVFINVQIASLMSKWLGDAQKLVTAVFTLAHKL 144 Query: 113 ------LEDIDLLDFND------------TQLFHIIN--SIHQYDSSLLMTARTFPVSWG 152 ++++D T+ + + + Q L++ A P W Sbjct: 145 QPSIIFIDEVDSFLGRRGVTSHEVMTQMKTEFMALWDGLTTDQNARVLVLAATNRP--WE 202 Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206 + L RL A +I +PD ++ + + ++ D Y+ + Sbjct: 203 LDEAILR-RLPRA--FEIGMPDVKQRASILQVLLKEERVEDDLD-IDYLASLCD 252 >gi|259488300|tpe|CBF87639.1| TPA: AAA family ATPase/60S ribosome export protein Rix7, putative (AFU_orthologue; AFUA_1G09210) [Aspergillus nidulans FGSC A4] Length = 729 Score = 41.7 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 67/191 (35%), Gaps = 43/191 (22%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P R V+L GP G GK+ +AN ++ + S A S+ + Sbjct: 198 PPRGVLLHGPPGCGKTMIANAFAAELGVPFISISAPSIVSGMSGESEKALREHFEEAKRL 257 Query: 107 TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA- 165 + +++ID + NS + + ++ C+ DL L+ Sbjct: 258 APCLIFIDEIDAITPKRE------NSQREMEKRIV-------AQLLTCMDDLA--LEKTD 302 Query: 166 --TVVKISL---PD--DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218 V+ ++ PD D L + + + I++ + R + +LVD Sbjct: 303 GKPVIVLAATNRPDSLDAALRRGGRFDKEINMTVPSEPVREQILRALTRKM----RLVDD 358 Query: 219 MDNLALSRGMG 229 +D L++ Sbjct: 359 LDFKTLAKRTP 369 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 23/46 (50%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 V+L GP G GK+ LA +++SR+ S L + + + + Sbjct: 506 VLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAV 551 >gi|225010505|ref|ZP_03700976.1| AAA ATPase central domain protein [Flavobacteria bacterium MS024-3C] gi|225005334|gb|EEG43285.1| AAA ATPase central domain protein [Flavobacteria bacterium MS024-3C] Length = 425 Score = 41.7 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 11/24 (45%), Positives = 17/24 (70%) Query: 65 RVVILVGPSGSGKSCLANIWSDKS 88 +IL GP G+GK+ LANI + ++ Sbjct: 40 PSIILWGPPGTGKTTLANIIAAQT 63 >gi|238484427|ref|XP_002373452.1| vacuolar sorting ATPase Vps4, putative [Aspergillus flavus NRRL3357] gi|317140519|ref|XP_001818235.2| vacuolar protein sorting-associated protein 4 [Aspergillus oryzae RIB40] gi|220701502|gb|EED57840.1| vacuolar sorting ATPase Vps4, putative [Aspergillus flavus NRRL3357] Length = 434 Score = 41.7 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 14/80 (17%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + ++L GP G+GKS LA + ++ ST FS + L S + + ++ Sbjct: 164 PWKGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESERLV---------- 213 Query: 123 DTQLFHIINSIHQYDSSLLM 142 QLF N + +++ Sbjct: 214 -KQLF---NMARENKPAIIF 229 >gi|195120371|ref|XP_002004702.1| GI19458 [Drosophila mojavensis] gi|193909770|gb|EDW08637.1| GI19458 [Drosophila mojavensis] Length = 801 Score = 41.7 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 78/201 (38%), Gaps = 52/201 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 234 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 293 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148 + + +++ID + QL +++ + + ++M A P Sbjct: 294 SPAIIFIDEIDAIAPKRDKTHGEVERRIVSQLLTLMDGMKKSSHLIVMAATNRPNSIDPA 353 Query: 149 --------VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV-IVKMFADRQIFIDKKLAA 199 + +PD RL+ V++I + E V + ++ A+ + LA+ Sbjct: 354 LRRFGRFDREIDIGIPDATGRLE---VLRIHTKNMKLHEDVDLEQIAAETHGHVGADLAS 410 Query: 200 YIVQRMERSLVFAEKLVDKMD 220 S +++ +KMD Sbjct: 411 LC------SEAALQQIREKMD 425 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 507 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKA 563 >gi|308802281|ref|XP_003078454.1| Predicted nucleotide kinase/nuclear protein involved oxidative stress response (ISS) [Ostreococcus tauri] gi|116056906|emb|CAL53195.1| Predicted nucleotide kinase/nuclear protein involved oxidative stress response (ISS) [Ostreococcus tauri] Length = 180 Score = 41.7 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 4/67 (5%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123 + +++ G GSGK+ LA+ + + + R A +E +D + + Sbjct: 11 APFILITGVPGSGKTTLADALAARIDARRLDVGALCAAEGFHGAY----VEAMDTHELRE 66 Query: 124 TQLFHII 130 L + Sbjct: 67 DALLDRM 73 >gi|300778766|ref|ZP_07088624.1| replication-associated recombination protein A [Chryseobacterium gleum ATCC 35910] gi|300504276|gb|EFK35416.1| replication-associated recombination protein A [Chryseobacterium gleum ATCC 35910] Length = 425 Score = 41.7 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 51/133 (38%), Gaps = 23/133 (17%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI---DLLDF 121 +I GP G+GK+ LA I S++S + A S + ++ED +L Sbjct: 42 NSLIFWGPPGTGKTTLAEIISEQSGRKFYKLSAVSSGVKDVRD----VIEDAKKQNLFSG 97 Query: 122 NDTQLF----HIIN--------SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 LF H N + +L+ A T S+ V L SR + V Sbjct: 98 KSPILFIDEIHRFNKSQQDSLLHAVEKGWIVLIGATTENPSFEVVSA-LLSR---SQVYI 153 Query: 170 ISLPDDDFLEKVI 182 + + LE++I Sbjct: 154 LKALSYEKLEELI 166 >gi|289583038|ref|YP_003481504.1| adenosinetriphosphatase [Natrialba magadii ATCC 43099] gi|289532591|gb|ADD06942.1| Adenosinetriphosphatase [Natrialba magadii ATCC 43099] Length = 746 Score = 41.7 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 22/173 (12%), Positives = 62/173 (35%), Gaps = 39/173 (22%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P V+L GP G+GK+ +A +++ + + ++ + + Sbjct: 259 PPSGVLLYGPPGTGKTLIARAVANEVDAHFVTISGPEIMSKYKGESEEQLRRTFEEAREN 318 Query: 107 TRKPVLLEDIDLLDF--NDT---------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 + ++ID + +D QL +++ + +++ A S L Sbjct: 319 APTIIFFDEIDSIAGTRDDEGDAENRIVGQLLTLMDGLDARGEVIVIGATNRVDSIDPAL 378 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQR 204 + ++I +PD+ ++++ R + + + + + +R Sbjct: 379 R------RGGRFDREIQIGVPDETGRKEILEVH--TRGMPLAEDVSVDALARR 423 Score = 36.7 bits (84), Expect = 3.4, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 53/163 (32%), Gaps = 34/163 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P V+L GP G+GK+ LA + ++ I K + Sbjct: 526 PPSGVLLHGPPGTGKTLLARALAGETDVNFVRVDGPEIIDRYVGESEKAIRKVFERARQA 585 Query: 107 TRKPVLLEDIDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 V ++ID + +QL ++ + + + +++ A L Sbjct: 586 APSIVFFDEIDAITAARGEGHEVTERVVSQLLTELDGMRENPNLVVLAATNRKDQIDPAL 645 Query: 156 PDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L RL T V + PD EK++ R + + Sbjct: 646 --LRPGRLD--THVYVGEPDHAAREKILEVH--SRGKPLGDDV 682 >gi|220912427|ref|YP_002487736.1| AFG1-family ATPase [Arthrobacter chlorophenolicus A6] gi|219859305|gb|ACL39647.1| AFG1-family ATPase [Arthrobacter chlorophenolicus A6] Length = 345 Score = 41.7 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 12/98 (12%) Query: 67 VILVGPSGSGKSC-LANIWSDKSR----------STRFSNIAKSLDSILIDTRKPVLLED 115 + L G G GK+ LA++W + ++ + + K V +++ Sbjct: 83 IYLDGGFGVGKTHLLASLWHAAPGPKAFGTFVEYTNLVGALSFRKTVDALSSYKLVCIDE 142 Query: 116 IDLLDFNDTQLFH-IINSIHQYDSSLLMTARTFPVSWG 152 +L D DT L ++ + L T+ T P S G Sbjct: 143 FELDDPGDTVLMSRLMRELADAGVKLAATSNTLPGSLG 180 >gi|167043583|gb|ABZ08278.1| putative Holliday junction DNA helicase ruvB C-terminal domain [uncultured marine microorganism HF4000_APKG2K17] Length = 354 Score = 41.7 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 77/201 (38%), Gaps = 27/201 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G GK+ LANI++ + S ++ L+ +L ++ Sbjct: 71 VLLSGPPGLGKTTLANIFAREMEVQLRSTSGPVIERQGDLAAILTNLDPGSILFIDEI-- 128 Query: 127 FHIINSIHQ-------YDSSLLMTARTFP--VSWGVCLPD------------LCS--RLK 163 H +N + + D +L + P + + LP L S R + Sbjct: 129 -HRLNRVVEEVLYGAMEDFTLDIIIGEGPGARTVKIDLPHFTLVGATTRAGLLSSPLRER 187 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNL 222 +++ D + L+ +I++ + I I ++ + + +R + A +L+ + D Sbjct: 188 FGIQFRLNFYDAEDLKTIILRAASLLGIEIVEEASLELARRARGTPRIANRLLKRCRDFA 247 Query: 223 ALSRGMGITRSLAAEVLKETQ 243 + IT L L+ + Sbjct: 248 DMETSGVITLPLVERSLERMR 268 >gi|121702517|ref|XP_001269523.1| proteasome regulatory particle subunit Rpt5, putative [Aspergillus clavatus NRRL 1] gi|119397666|gb|EAW08097.1| proteasome regulatory particle subunit Rpt5, putative [Aspergillus clavatus NRRL 1] Length = 466 Score = 41.7 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 24/167 (14%), Positives = 56/167 (33%), Gaps = 39/167 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P ++ GP G+GK+ LA + ++ +T L + I ++ Sbjct: 246 PKGALM-YGPPGTGKTLLARACAAETNATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEK 304 Query: 113 ------LEDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSW 151 ++++D + + ++N D ++ A Sbjct: 305 APSIIFIDELDAVGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRIKVLAATNRIDVL 364 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L L S RL ++ LP+++ ++ R++ +D + Sbjct: 365 DPAL--LRSGRLD--RKIEFPLPNEEARANILQ--IHSRKMAVDDTV 405 >gi|90076686|dbj|BAE88023.1| unnamed protein product [Macaca fascicularis] Length = 227 Score = 41.7 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 5 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 56 >gi|120404241|ref|YP_954070.1| IstB ATP binding domain-containing protein [Mycobacterium vanbaalenii PYR-1] gi|119957059|gb|ABM14064.1| IstB domain protein ATP-binding protein [Mycobacterium vanbaalenii PYR-1] Length = 265 Score = 41.7 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 24/122 (19%) Query: 67 VILVGPSGSGKSCLA----NIWSDKSRSTRFSNIAKSLDSILIDTRKPVL------LEDI 116 V+L+G SG+GKS L ++ R R+ A+ ++ ++ + VL + Sbjct: 115 VVLLGDSGTGKSHLLIGLGLAACEQGRRVRYVTTAQLVNELVEAADERVLSRVVARYGRL 174 Query: 117 DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 DLL ++ LF II + + +S+ + WG PD RL AA Sbjct: 175 DLLCLDELGYVQIDPRGAELLFQII-TEREERASVAIATNLPFSEWGTVFPD--PRLVAA 231 Query: 166 TV 167 V Sbjct: 232 IV 233 >gi|85714528|ref|ZP_01045515.1| putative transposase [Nitrobacter sp. Nb-311A] gi|85714796|ref|ZP_01045782.1| putative transposase [Nitrobacter sp. Nb-311A] gi|85715061|ref|ZP_01046045.1| putative transposase [Nitrobacter sp. Nb-311A] gi|85715151|ref|ZP_01046135.1| putative transposase [Nitrobacter sp. Nb-311A] gi|85715330|ref|ZP_01046312.1| putative transposase [Nitrobacter sp. Nb-311A] gi|85715841|ref|ZP_01046819.1| putative transposase [Nitrobacter sp. Nb-311A] gi|85716135|ref|ZP_01047110.1| putative transposase [Nitrobacter sp. Nb-311A] gi|85716701|ref|ZP_01047669.1| putative transposase [Nitrobacter sp. Nb-311A] gi|85717527|ref|ZP_01048472.1| putative transposase [Nitrobacter sp. Nb-311A] gi|85717595|ref|ZP_01048537.1| putative transposase [Nitrobacter sp. Nb-311A] gi|85695600|gb|EAQ33516.1| putative transposase [Nitrobacter sp. Nb-311A] gi|85695644|gb|EAQ33557.1| putative transposase [Nitrobacter sp. Nb-311A] gi|85696419|gb|EAQ34309.1| putative transposase [Nitrobacter sp. Nb-311A] gi|85696968|gb|EAQ34851.1| putative transposase [Nitrobacter sp. Nb-311A] gi|85697248|gb|EAQ35128.1| putative transposase [Nitrobacter sp. Nb-311A] gi|85697751|gb|EAQ35626.1| putative transposase [Nitrobacter sp. Nb-311A] gi|85697976|gb|EAQ35849.1| putative transposase [Nitrobacter sp. Nb-311A] gi|85698066|gb|EAQ35939.1| putative transposase [Nitrobacter sp. Nb-311A] gi|85698282|gb|EAQ36153.1| putative transposase [Nitrobacter sp. Nb-311A] gi|85698413|gb|EAQ36283.1| putative transposase [Nitrobacter sp. Nb-311A] Length = 287 Score = 41.7 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 22/110 (20%) Query: 64 SRVVILVGPSGSGKSCLANIWS-------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 R V+LVG +G+GK+ LA + + R ++ L+ + R+ L E + Sbjct: 98 QRNVVLVGGTGTGKTHLAIAIARSCIRSGARGRFYNVVDLVNRLEIETRNGRQGRLAEHL 157 Query: 117 ---DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 D + ++ LFH+++ +++ +S+++T W Sbjct: 158 TRMDFIVLDELGYLPFAQSGGQLLFHLVSRLYER-ASVIVTTNLAFGEWP 206 >gi|310822364|ref|YP_003954722.1| hypothetical protein STAUR_5123 [Stigmatella aurantiaca DW4/3-1] gi|309395436|gb|ADO72895.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1] Length = 444 Score = 41.7 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 3/74 (4%) Query: 35 CLGISRDDLLVH-SAIEQAVRLIDS--WPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91 +SR+DLL+ S + L+D SR + L GP G+GK+ LA S Sbjct: 140 NPVVSREDLLMGLSHLTVTEELLDKLGPAVNSSRSLFLYGPPGNGKTSLAEAISRMFGGE 199 Query: 92 RFSNIAKSLDSILI 105 F +D+ +I Sbjct: 200 AFVPYCLEIDNQII 213 >gi|258566251|ref|XP_002583870.1| hypothetical protein UREG_06837 [Uncinocarpus reesii 1704] gi|237907571|gb|EEP81972.1| hypothetical protein UREG_06837 [Uncinocarpus reesii 1704] Length = 361 Score = 41.7 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 14/80 (17%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + ++L GP G+GKS LA + ++ ST FS + L S + + ++ Sbjct: 163 PWKGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESERLV---------- 212 Query: 123 DTQLFHIINSIHQYDSSLLM 142 QLF N + +++ Sbjct: 213 -KQLF---NMARENKPAIIF 228 >gi|227543541|ref|ZP_03973590.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri CF48-3A] gi|300908249|ref|ZP_07125715.1| replication-associated recombination protein A [Lactobacillus reuteri SD2112] gi|227186468|gb|EEI66539.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri CF48-3A] gi|300894676|gb|EFK88032.1| replication-associated recombination protein A [Lactobacillus reuteri SD2112] Length = 434 Score = 41.7 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 20/137 (14%) Query: 67 VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKP-------VLLEDID 117 +IL GP G+GK+ +A+ + K + + + + I + +LL++I Sbjct: 42 MILYGPPGTGKTSIASAIAGSTKYAFRKLNAATDTKKDLQIVAEEAKMSGTVILLLDEIH 101 Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 LD D L H+ N +L+ A T + P + SR + V +S D Sbjct: 102 RLDKVKQDFLLPHLEN-----GRIILIGATTENPYISIN-PAIRSRTQIFPVYSLST--D 153 Query: 176 DFLEKVIVKMF-ADRQI 191 + + + +R + Sbjct: 154 EMKTAIQRALVDKERGL 170 >gi|221119825|ref|XP_002168341.1| PREDICTED: similar to spastin [Hydra magnipapillata] Length = 475 Score = 41.7 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 16/40 (40%), Positives = 27/40 (67%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P+R ++L GP G+GK+ LA + +S++T F+ A +L S Sbjct: 109 PARGLLLFGPPGNGKTLLAKAVATQSKATFFNISAATLTS 148 >gi|167382107|ref|XP_001735975.1| hypothetical protein [Entamoeba dispar SAW760] gi|165901776|gb|EDR27788.1| hypothetical protein, conserved [Entamoeba dispar SAW760] Length = 622 Score = 41.7 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 29/167 (17%), Positives = 59/167 (35%), Gaps = 40/167 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P R ++L GP G GK+ LA + + A L S Sbjct: 74 PPRGILLHGPPGCGKTLLAKAIAGEVGVAFIEVSATELVGGMSGESESKIRDLFQSASQR 133 Query: 107 TRKPVLLEDIDLL------DFND------TQLFHIINSIHQYDSSLLMTART-FPVSWGV 153 + +++ID + + QL ++ + + D +++ T P S Sbjct: 134 APALLFIDEIDAITPKRDNAQREMERRIVAQLLSSLDKLSEADKPVIVIGATNRPDSLD- 192 Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L +A + + +P + ++++ KM + + ID + Sbjct: 193 --PALR---RAGRFDREIAMGIPSEAQRKQILDKMMVN--LKIDSAV 232 >gi|153814722|ref|ZP_01967390.1| hypothetical protein RUMTOR_00937 [Ruminococcus torques ATCC 27756] gi|317500253|ref|ZP_07958482.1| cell division protein FtsH [Lachnospiraceae bacterium 8_1_57FAA] gi|331087513|ref|ZP_08336447.1| hypothetical protein HMPREF1025_00030 [Lachnospiraceae bacterium 3_1_46FAA] gi|145847753|gb|EDK24671.1| hypothetical protein RUMTOR_00937 [Ruminococcus torques ATCC 27756] gi|316898349|gb|EFV20391.1| cell division protein FtsH [Lachnospiraceae bacterium 8_1_57FAA] gi|330406265|gb|EGG85782.1| hypothetical protein HMPREF1025_00030 [Lachnospiraceae bacterium 3_1_46FAA] Length = 645 Score = 41.7 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 44/140 (31%), Gaps = 45/140 (32%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 +LVGP G+GK+ LA + ++ FS + + Sbjct: 204 ALLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEMFVGMGASKVRDLFKQANEKAPCI 263 Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW---- 151 V +++ID + ND QL ++ +++ A P + Sbjct: 264 VFIDEIDTIGKKRDSHGMAGNDEREQTLNQLLTEMDGFDASKGVVILAATNRPDTLDPAL 323 Query: 152 ----------GVCLPDLCSR 161 V LPDL R Sbjct: 324 LRPGRFDRRIPVELPDLKGR 343 >gi|170726827|ref|YP_001760853.1| recombination factor protein RarA [Shewanella woodyi ATCC 51908] gi|169812174|gb|ACA86758.1| AAA ATPase central domain protein [Shewanella woodyi ATCC 51908] Length = 443 Score = 41.7 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 66/175 (37%), Gaps = 30/175 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLD---F 121 ++ GP G+GK+ LA + ++ + + R S + + I +E + Sbjct: 52 MMFWGPPGTGKTTLAELVANYANAHVERISAVTSGVKEIRT------AIEHAKNVAESRG 105 Query: 122 NDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 T LF H N + + + + A T S+ + L SR + + K Sbjct: 106 QRTLLFVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEINNA-LLSRARVYLIKK 164 Query: 170 ISLPDDDFL---EKVI--VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 ++ D+ L + ++ + R++ I +A + + A L++ M Sbjct: 165 LTN-DEIVLIVNQALLDVERGLGKRKLTIPDAVANKLANVCDGDARKALNLIELM 218 >gi|116333872|ref|YP_795399.1| recombination factor protein RarA [Lactobacillus brevis ATCC 367] gi|116099219|gb|ABJ64368.1| Recombination protein MgsA [Lactobacillus brevis ATCC 367] Length = 425 Score = 41.7 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 53/133 (39%), Gaps = 20/133 (15%) Query: 67 VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKP-------VLLEDID 117 +IL GP G+GK+ +A+ + + + + S + I + +LL++I Sbjct: 43 MILYGPPGTGKTSIASAIAGSTQYAFRKLNAATDSKKDLQIVAEEAKMSGTVILLLDEIH 102 Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 LD D L H+ + +L+ A T + P + SR + ++ Sbjct: 103 RLDKTKQDFLLPHL-----ESGRIVLIGATTENPYININ-PAIRSR---TQIFEVHPLTP 153 Query: 176 DFLEKVIVKMFAD 188 D ++ + + D Sbjct: 154 DDIKIALHRALTD 166 >gi|147919399|ref|YP_686862.1| proteasome-activating nucleotidase [uncultured methanogenic archaeon RC-I] gi|121685313|sp|Q0W257|PAN_UNCMA RecName: Full=Proteasome-activating nucleotidase; Short=PAN; AltName: Full=Proteasomal ATPase; AltName: Full=Proteasome regulatory ATPase; AltName: Full=Proteasome regulatory particle gi|110622258|emb|CAJ37536.1| 26s proteasome, regulatory subunit (proteasome-activating nucleotidase) [uncultured methanogenic archaeon RC-I] Length = 417 Score = 41.7 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 27/52 (51%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA ++++++T I L I ++ E Sbjct: 192 PPKGVLLYGPPGTGKTLLAKAVANRTKATFIRIIGSELVQKYIGEGARMVRE 243 >gi|49175787|gb|AAT52191.1| 26S proteasome ATPase subunit [Pisum sativum] Length = 211 Score = 41.7 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 45/144 (31%), Gaps = 46/144 (31%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P V+ GP G+GK+ LA ++++ + I L + ++ Sbjct: 40 PKGVLC-YGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSK 98 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQYDSS----LLMTARTF--- 147 +++D + + I+N + +D+ +LM Sbjct: 99 KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 158 Query: 148 -PVSW---------GVCLPDLCSR 161 P LPDL SR Sbjct: 159 DPALLRPGRLDRKVEFGLPDLESR 182 >gi|330932516|ref|XP_003303807.1| hypothetical protein PTT_16168 [Pyrenophora teres f. teres 0-1] gi|311319950|gb|EFQ88096.1| hypothetical protein PTT_16168 [Pyrenophora teres f. teres 0-1] Length = 430 Score = 41.7 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 9/69 (13%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTR---------KPVLL 113 P + ++L GP G+GKS LA + ++ ST FS + L S L+ + + Sbjct: 167 PWKGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKLVKQLFGMARENKPSIIFI 226 Query: 114 EDIDLLDFN 122 ++ID L Sbjct: 227 DEIDALCGP 235 >gi|260809218|ref|XP_002599403.1| hypothetical protein BRAFLDRAFT_242774 [Branchiostoma floridae] gi|229284681|gb|EEN55415.1| hypothetical protein BRAFLDRAFT_242774 [Branchiostoma floridae] Length = 396 Score = 41.7 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 16/92 (17%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDS---WP----------SWPSRVVILVGPSGSGKSCL 80 +S DD+ + +E A I WP P + ++L GP G+GK+ + Sbjct: 115 HGPPVSWDDI---AGLEFAKATIKEIVIWPMLRPDIFKGLRGPPKGLLLFGPPGTGKTLI 171 Query: 81 ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 + +S +T FS A SL S + + ++ Sbjct: 172 GKCIASQSGATFFSISASSLTSKWVGEGEKLV 203 >gi|212543135|ref|XP_002151722.1| vacuolar sorting ATPase Vps4, putative [Penicillium marneffei ATCC 18224] gi|210066629|gb|EEA20722.1| vacuolar sorting ATPase Vps4, putative [Penicillium marneffei ATCC 18224] Length = 433 Score = 41.7 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 14/80 (17%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + ++L GP G+GKS LA + ++ ST FS + L S + + ++ Sbjct: 163 PWKGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESERLV---------- 212 Query: 123 DTQLFHIINSIHQYDSSLLM 142 QLF N + +++ Sbjct: 213 -KQLF---NMARENKPAIIF 228 >gi|147919922|ref|YP_686325.1| replication factor C, large subunit [uncultured methanogenic archaeon RC-I] gi|121687915|sp|Q0W3P4|RFCL_UNCMA RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|110621721|emb|CAJ36999.1| replication factor C, large subunit [uncultured methanogenic archaeon RC-I] Length = 553 Score = 41.7 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 35/212 (16%), Positives = 68/212 (32%), Gaps = 42/212 (19%) Query: 48 AIEQAVRLIDSWPS--WPSRV-VILVGPSGSGKSCLANIWSDKSR--------------- 89 + AV+ + W + VIL G G GK+ A + Sbjct: 24 GNDAAVKALRQWAETFGTGKKAVILYGGPGVGKTSAALALAHDMGWDYIELNASDVRTKD 83 Query: 90 --STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN-----DTQLFHIINSIHQYDSSLLM 142 + A + R+ V+L++ D L N + IIN I +++ Sbjct: 84 AINRIAGPAAMAGTFEGTGGRRLVILDEADNLHGNYDRGGEAA---IINVIRNASQPVIL 140 Query: 143 TA-RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 A + +S + L + +A + KV+ K+ A+ + D + I Sbjct: 141 IANDMYAMSKPLRESALQIQFRAILSTSV--------AKVLRKVCANEGLKCDPEALMKI 192 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233 +R ++ + A +T + Sbjct: 193 AERT----NDLRSAINDL-QAAAQGSGQVTVA 219 >gi|237742214|ref|ZP_04572695.1| holliday junction DNA helicase ruvB [Fusobacterium sp. 4_1_13] gi|256845487|ref|ZP_05550945.1| Holliday junction DNA helicase RuvB [Fusobacterium sp. 3_1_36A2] gi|294785207|ref|ZP_06750495.1| holliday junction DNA helicase RuvB [Fusobacterium sp. 3_1_27] gi|229429862|gb|EEO40074.1| holliday junction DNA helicase ruvB [Fusobacterium sp. 4_1_13] gi|256719046|gb|EEU32601.1| Holliday junction DNA helicase RuvB [Fusobacterium sp. 3_1_36A2] gi|294486921|gb|EFG34283.1| holliday junction DNA helicase RuvB [Fusobacterium sp. 3_1_27] Length = 338 Score = 41.7 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 3/70 (4%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G GK+ LA + +++ ++ L+ LE+ D+L ++ Sbjct: 55 ILLYGPPGLGKTTLAGVIANEMKANLKITSGPILEKAGDLAAILTSLEENDILFIDEI-- 112 Query: 127 FHIINSIHQY 136 H +NS + Sbjct: 113 -HRLNSTVEE 121 >gi|255563409|ref|XP_002522707.1| Protein cdcH, putative [Ricinus communis] gi|223538057|gb|EEF39669.1| Protein cdcH, putative [Ricinus communis] Length = 828 Score = 41.7 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 16/101 (15%), Positives = 39/101 (38%), Gaps = 25/101 (24%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSR--------STRFSNIAKSLDSILID-------- 106 P ++L GP G GK+ LA+ ++++ + S ++ + + + + Sbjct: 286 PIGGILLHGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRELFSKAYRT 345 Query: 107 TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL---LMTA 144 V +++ID + N + + + L+T Sbjct: 346 APSIVFIDEIDAIASKRE------NLQREMERRIVTQLLTC 380 Score = 37.8 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 8/46 (17%), Positives = 21/46 (45%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 ++L GP G GK+ +A ++++ + L + + + + Sbjct: 595 ILLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAV 640 >gi|254302939|ref|ZP_04970297.1| crossover junction DNA helicase RuvB [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323131|gb|EDK88381.1| crossover junction DNA helicase RuvB [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 338 Score = 41.7 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 3/70 (4%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G GK+ LA + +++ ++ L+ LE+ D+L ++ Sbjct: 55 ILLYGPPGLGKTTLAGVIANEMKANLKITSGPILEKAGDLAAILTSLEENDILFIDEI-- 112 Query: 127 FHIINSIHQY 136 H +NS + Sbjct: 113 -HRLNSTVEE 121 >gi|150401457|ref|YP_001325223.1| proteasome-activating nucleotidase [Methanococcus aeolicus Nankai-3] gi|150014160|gb|ABR56611.1| 26S proteasome subunit P45 family [Methanococcus aeolicus Nankai-3] Length = 408 Score = 41.7 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA ++++ ++ + L I ++ + Sbjct: 182 PPKGVLLYGPPGTGKTLLAKAVANETNASFIKLVGSELVKKFIGEGAKLVKD 233 >gi|21113093|gb|AAM41265.1| ATPase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573854|gb|AAY49264.1| ATPase [Xanthomonas campestris pv. campestris str. 8004] Length = 428 Score = 41.7 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 40/200 (20%), Positives = 67/200 (33%), Gaps = 31/200 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD-FNDTQ 125 +IL GP G GK+ LA + + + + F I+ L + + VL E T Sbjct: 34 MILWGPPGCGKTTLALLLAHYADAE-FKAISAVLSGLPDVRQ--VLAEAAQRFASGRRTV 90 Query: 126 LF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKIS 171 LF H N Q ++L T L SR + + +S Sbjct: 91 LFVDEVHRFNKAQQDAFLPHIERGTILFVGATTENPSFELNSA---LLSRCRVHVLEGVS 147 Query: 172 LPD--DDFLEKVIVKMFADRQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 D + + A+R + + + I + + A L++ LA Sbjct: 148 PQDIVEALQRAL---HDAERGLGQETIQVSEASLLEIASAADGDVRRALTLLEIAAELAT 204 Query: 225 SRGMGITRSLAAEVLKETQQ 244 G IT +VL + + Sbjct: 205 GEGGEITPRTLLQVLADRTR 224 >gi|19704552|ref|NP_604114.1| Holliday junction DNA helicase RuvB [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296328431|ref|ZP_06870957.1| crossover junction ATP-dependent DNA helicase RuvB [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|22001977|sp|Q8RE97|RUVB_FUSNN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|19714838|gb|AAL95413.1| Holliday junction DNA helicase ruvB [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296154505|gb|EFG95297.1| crossover junction ATP-dependent DNA helicase RuvB [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 332 Score = 41.7 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 3/70 (4%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G GK+ LA + +++ ++ L+ LE+ D+L ++ Sbjct: 55 ILLYGPPGLGKTTLAGVIANEMKANLKITSGPILEKAGDLAAILTSLEENDILFIDEI-- 112 Query: 127 FHIINSIHQY 136 H +NS + Sbjct: 113 -HRLNSTVEE 121 >gi|34763187|ref|ZP_00144153.1| Holliday junction DNA helicase ruvB [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887156|gb|EAA24261.1| Holliday junction DNA helicase ruvB [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 338 Score = 41.7 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 3/70 (4%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G GK+ LA + +++ ++ L+ LE+ D+L ++ Sbjct: 55 ILLYGPPGLGKTTLAGVIANEMKANLKITSGPILEKAGDLAAILTSLEENDILFIDEI-- 112 Query: 127 FHIINSIHQY 136 H +NS + Sbjct: 113 -HRLNSTVEE 121 >gi|321263001|ref|XP_003196219.1| cell division cycle protein 48 [Cryptococcus gattii WM276] gi|317462694|gb|ADV24432.1| Cell division cycle protein 48, putative [Cryptococcus gattii WM276] Length = 810 Score = 41.7 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 63/164 (38%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 239 PPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 298 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + ++++D + QL +++ + + ++M A P S Sbjct: 299 SPSIIFIDELDSIAPKREKANGEVERRVVSQLLTLMDGLKARSNVVVMAATNRPNSIDPA 358 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L R + V I +PD +++ + + + + Sbjct: 359 LR----RFGRFDREVDIGIPDPTGRLEIL--RIHTKNMKLSDDV 396 Score = 37.4 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 27/57 (47%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G+GK+ LA +++ ++ S L ++ + + + D Sbjct: 512 PSKGVLFYGPPGTGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKA 568 >gi|282899399|ref|ZP_06307366.1| AAA ATPase, central region protein [Cylindrospermopsis raciborskii CS-505] gi|281195663|gb|EFA70593.1| AAA ATPase, central region protein [Cylindrospermopsis raciborskii CS-505] Length = 615 Score = 41.7 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 25/50 (50%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 R ++L GP G+GK+ LA + ++R+ + L + + + + E Sbjct: 396 RGILLWGPPGTGKTLLAKAVASQARANFIAVNGPELLTRWVGASEQAVRE 445 >gi|193629665|ref|XP_001951431.1| PREDICTED: 26S protease regulatory subunit 10B-like [Acyrthosiphon pisum] Length = 395 Score = 41.7 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + + ++ ++ I ++ E Sbjct: 172 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 223 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 224 ------MFNYARDHQ 232 >gi|158288070|ref|XP_309949.3| AGAP011557-PA [Anopheles gambiae str. PEST] gi|157019297|gb|EAA05708.3| AGAP011557-PA [Anopheles gambiae str. PEST] Length = 431 Score = 41.7 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V++ GP G+GK+ LA + ++++T L + I ++ + Sbjct: 211 PPKGVLMYGPPGTGKTLLARACAAQTKATFIKLAGPQLVQMFIGDGAKLVRD 262 >gi|92115946|ref|YP_575675.1| IstB-like ATP-binding protein [Nitrobacter hamburgensis X14] gi|92119333|ref|YP_579062.1| IstB-like ATP-binding protein [Nitrobacter hamburgensis X14] gi|91798840|gb|ABE61215.1| IstB-like ATP-binding protein [Nitrobacter hamburgensis X14] gi|91802227|gb|ABE64602.1| IstB-like ATP-binding protein [Nitrobacter hamburgensis X14] Length = 287 Score = 41.7 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 46/110 (41%), Gaps = 22/110 (20%) Query: 64 SRVVILVGPSGSGKSCLANIWS-------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 R +LVG +G+GK+ LA + + R ++ L+ + R+ + E + Sbjct: 98 QRNAVLVGGTGTGKTHLAIAIARSCIRSGARGRFYNVVDLVNRLEIETRNGRQGRIAEHL 157 Query: 117 ---DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 D + ++ LFH+++ +++ +S+++T W Sbjct: 158 TRMDFIVLDELGYLPFAQSGGQLLFHLVSRLYER-TSIVVTTNLAFGEWP 206 >gi|67527991|ref|XP_661840.1| hypothetical protein AN4236.2 [Aspergillus nidulans FGSC A4] gi|40740145|gb|EAA59335.1| conserved hypothetical protein [Aspergillus nidulans FGSC A4] gi|259481153|tpe|CBF74421.1| TPA: hypothetical protein similar to TAT-binding protein 1 (Broad) [Aspergillus nidulans FGSC A4] Length = 465 Score = 41.7 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 22/160 (13%), Positives = 53/160 (33%), Gaps = 38/160 (23%) Query: 70 VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113 GP G+GK+ LA + ++ +T L + I ++ + Sbjct: 251 YGPPGTGKTLLARACAAETNATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPSIIFI 310 Query: 114 EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158 +++D + + ++N D ++ A L L Sbjct: 311 DELDAVGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRIKVLAATNRVDVLDPAL--L 368 Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 S RL ++ LP+++ ++ R++ ++ + Sbjct: 369 RSGRLD--RKIEFPLPNEEARANILQ--IHSRKMTVEDSV 404 >gi|332662821|ref|YP_004445609.1| AAA ATPase central domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332331635|gb|AEE48736.1| AAA ATPase central domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 425 Score = 41.7 bits (97), Expect = 0.11, Method: Composition-based stats. Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 23/138 (16%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKP------------ 110 +IL GP G GK+ LANI + + S IA + + +K Sbjct: 39 PSIILWGPPGVGKTTLANILASELGRPFYSLSAIAAGVKDVRDTIQKAEQQRFFNRPNPI 98 Query: 111 VLLEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 + +++I + L + LM A T S+ V +P L SR V Sbjct: 99 LFIDEIHRFSKSQQDALL----GAVEKGVITLMGATTENPSFEV-IPALLSR---CQVYV 150 Query: 170 ISLPDDDFLEKVIVKMFA 187 + L + D L ++I + Sbjct: 151 LKLLETDQLLQLIQEALQ 168 >gi|269114890|ref|YP_003302653.1| ATPase, AAA family [Mycoplasma hominis] gi|268322515|emb|CAX37250.1| ATPase, AAA family [Mycoplasma hominis ATCC 23114] Length = 404 Score = 41.7 bits (97), Expect = 0.11, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 71/182 (39%), Gaps = 26/182 (14%) Query: 64 SRVVILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSIL--IDTRKPVLLEDIDLL 119 R I G G+GK+ ++ I ++ K F+ ++ + ++ + K +++++I L Sbjct: 36 YRSFIFYGKPGTGKTTISYILANALKVNYEYFNAAIENKEDLVHKLKLNKILIIDEIHRL 95 Query: 120 DFN--DTQLFHIINSIHQYDSSLLMTARTFPVSWG-VCL-PDLCSRLKAATVVKISLPDD 175 + + D L ++ N L+T L P L SR ++++I+ P Sbjct: 96 NKDKQDILLPYLEND--------LITIYATTTENPYFKLNPALRSR---CSIIEITKPTI 144 Query: 176 DFLEKVIVKMFADR-QIFIDKKLAAYIVQRMERSLVFAEKLVDKM-----DNL-ALSRGM 228 L + + ++K +A Y+ + A +D + D +L Sbjct: 145 QDLSSCLKNACLKTFGVDLNKDIADYLALQANGDFRSALNNLDLIMLIFKDQEFSLEAIK 204 Query: 229 GI 230 I Sbjct: 205 KI 206 >gi|225718662|gb|ACO15177.1| 26S protease regulatory subunit S10B [Caligus clemensi] Length = 392 Score = 41.7 bits (97), Expect = 0.11, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + + ++ ++ I ++ E Sbjct: 169 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 220 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 221 ------MFNYARDHQ 229 >gi|195059036|ref|XP_001995550.1| GH17814 [Drosophila grimshawi] gi|193896336|gb|EDV95202.1| GH17814 [Drosophila grimshawi] Length = 397 Score = 41.7 bits (97), Expect = 0.11, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + + ++ ++ I ++ E Sbjct: 174 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 225 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 226 ------MFNYARDHQ 234 >gi|114678323|ref|XP_001172040.1| PREDICTED: RuvB-like 2 isoform 3 [Pan troglodytes] Length = 422 Score = 41.7 bits (97), Expect = 0.11, Method: Composition-based stats. Identities = 18/132 (13%), Positives = 46/132 (34%), Gaps = 22/132 (16%) Query: 116 IDLLDFNDTQLFHIINSIHQYD-SSLLM------------TARTFPVSWGVCLPDLCSRL 162 ID + D + F +N + D + +L+ T+ P + L D RL Sbjct: 298 IDEVHMLDIESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD---RL 354 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 +V + + ++++ + + + + ++ R+ + + Sbjct: 355 ---LIVSTTPYSEKDTKQILRIRCEEEDVEMSEDAYT-VLTRIGLE-TSLRYAIQLITAA 409 Query: 223 ALS-RGMGITRS 233 +L R ++R Sbjct: 410 SLVCRKRKVSRP 421 >gi|118378556|ref|XP_001022453.1| ATPase, AAA family protein [Tetrahymena thermophila] gi|89304220|gb|EAS02208.1| ATPase, AAA family protein [Tetrahymena thermophila SB210] Length = 488 Score = 41.7 bits (97), Expect = 0.11, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 21/67 (31%) Query: 28 LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87 L FP +I W R ++L GP G+GK+ LA + + Sbjct: 204 LPIRFPHIFQ----------------GMIKPW-----RGILLYGPPGTGKTFLAKACATE 242 Query: 88 SRSTRFS 94 +T FS Sbjct: 243 CDATFFS 249 >gi|46201290|ref|ZP_00208042.1| COG0465: ATP-dependent Zn proteases [Magnetospirillum magnetotacticum MS-1] Length = 639 Score = 41.7 bits (97), Expect = 0.11, Method: Composition-based stats. Identities = 34/204 (16%), Positives = 69/204 (33%), Gaps = 47/204 (23%) Query: 68 ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP----------------V 111 +LVGP G+GK+ LA + ++ F+ + + + Sbjct: 192 LLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEMFVGVGASRVRDMFEQGKKNAPCII 251 Query: 112 LLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCLP 156 +++ID + D + L + ++ + +L+ A P L Sbjct: 252 FIDEIDAVGRHRGAGLGGGNDEREQTLNQLLVEMDGFESNEGVILIAATNRPDVLDPAL- 310 Query: 157 DLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213 L+ V + PD EK+I R++ + + A I+ R A Sbjct: 311 -----LRPGRFDRQVTVPNPDILGREKIIKVHM--RKVPLSPDVDARIIARGTPGFSGA- 362 Query: 214 KLVDKMDNLAL----SRGMGITRS 233 L + ++ AL + +T + Sbjct: 363 DLANLVNEAALLAARAGKRVVTMA 386 >gi|67525207|ref|XP_660665.1| hypothetical protein AN3061.2 [Aspergillus nidulans FGSC A4] gi|40744456|gb|EAA63632.1| hypothetical protein AN3061.2 [Aspergillus nidulans FGSC A4] gi|259485992|tpe|CBF83480.1| TPA: vacuolar sorting ATPase Vps4, putative (AFU_orthologue; AFUA_3G09360) [Aspergillus nidulans FGSC A4] Length = 434 Score = 41.7 bits (97), Expect = 0.11, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 14/80 (17%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + ++L GP G+GKS LA + ++ ST FS + L S + + ++ Sbjct: 164 PWKGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESERLV---------- 213 Query: 123 DTQLFHIINSIHQYDSSLLM 142 QLF N + +++ Sbjct: 214 -KQLF---NMARENKPAIIF 229 >gi|254580125|ref|XP_002496048.1| ZYRO0C09262p [Zygosaccharomyces rouxii] gi|238938939|emb|CAR27115.1| ZYRO0C09262p [Zygosaccharomyces rouxii] Length = 830 Score = 41.7 bits (97), Expect = 0.11, Method: Composition-based stats. Identities = 37/205 (18%), Positives = 79/205 (38%), Gaps = 60/205 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R V++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 247 PPRGVLMYGPPGTGKTLMARAVANETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEKN 306 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + +++ID + QL +++ + + +++ A P S Sbjct: 307 APAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKSRSNVVVIAATNRPNSIDPA 366 Query: 152 -----------GVCLPDLCSRLKAATVVKIS-----LPDDDFLEKVIVKMFADRQIFIDK 195 + +PD RL+ V++I L DD LE + A+ ++ Sbjct: 367 LRRFGRFDREVDIGIPDATGRLE---VLRIHTKNMKLADDVDLEAL----AAETHGYVGA 419 Query: 196 KLAAYIVQRMERSLVFAEKLVDKMD 220 +A+ S +++ +KMD Sbjct: 420 DVASLC------SEAAMQQIREKMD 438 Score = 37.1 bits (85), Expect = 2.5, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 16/74 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 PS+ V+ GP G+GK+ LA + + + SNI D Sbjct: 520 PSKGVLFYGPPGTGKTLLAKAVATEVSANFISVKGPELLSMWYGESESNIRDIFDKARAA 579 Query: 107 TRKPVLLEDIDLLD 120 V L+++D + Sbjct: 580 APTVVFLDELDSIA 593 >gi|271970341|ref|YP_003344537.1| microtubule-severing ATPase [Streptosporangium roseum DSM 43021] gi|270513516|gb|ACZ91794.1| Microtubule-severing ATPase [Streptosporangium roseum DSM 43021] Length = 656 Score = 41.7 bits (97), Expect = 0.11, Method: Composition-based stats. Identities = 32/211 (15%), Positives = 69/211 (32%), Gaps = 45/211 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110 V+L GP G+GK+ LA + ++ S + + + Sbjct: 200 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKANAPAI 259 Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + D + L + ++ +L+ A P L Sbjct: 260 IFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDVKGGVILIAATNRPDILDPAL 319 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211 L+ V + PD + + ++ R + + I +R Sbjct: 320 ------LRPGRFDRQVTVDRPDLEGRKGILKVH--GRGKPFAEGVELDIIARRTP-GFTG 370 Query: 212 AEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 A L + ++ AL + + E+L+E+ Sbjct: 371 A-DLANVINEAALLTARADQKLITMEMLEES 400 >gi|207343269|gb|EDZ70783.1| YLL034Cp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 693 Score = 41.7 bits (97), Expect = 0.11, Method: Composition-based stats. Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P V+ L GP G GK+ LA +++SR+ S Sbjct: 423 PGGVL-LWGPPGCGKTLLAKAVANESRANFIS 453 >gi|254432154|ref|ZP_05045857.1| ATPase [Cyanobium sp. PCC 7001] gi|197626607|gb|EDY39166.1| ATPase [Cyanobium sp. PCC 7001] Length = 753 Score = 41.7 bits (97), Expect = 0.11, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 63/163 (38%), Gaps = 24/163 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G+GK+ LA I + +R+ S A + T ++ T L Sbjct: 56 LILHGPPGTGKTTLARIIAGTTRAHFTSLNAVLAGVKDLRTAVDEARGRLEQHGLR-TLL 114 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N+ + + L+ A T + V L SR + + ++ + Sbjct: 115 FIDEVHRFNAAQQDALLPWVENGTVTLIGATTENPFFEVNKA-LVSR---SRLFRLQPLE 170 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 L +++ + + + A Y R++ + A+ LVD Sbjct: 171 PIHLHQLLQR-------ALSDEAAGYGRIRVQLTPEAADHLVD 206 >gi|194757830|ref|XP_001961165.1| GF11135 [Drosophila ananassae] gi|190622463|gb|EDV37987.1| GF11135 [Drosophila ananassae] Length = 801 Score = 41.7 bits (97), Expect = 0.11, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 78/201 (38%), Gaps = 52/201 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 234 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 293 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148 + + +++ID + QL +++ + + ++M A P Sbjct: 294 SPAIIFIDEIDAIAPKRDKTHGEVERRIVSQLLTLMDGMKKSSHLIVMAATNRPNSIDPA 353 Query: 149 --------VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV-IVKMFADRQIFIDKKLAA 199 + +PD RL+ V++I + E V + ++ A+ + LA+ Sbjct: 354 LRRFGRFDREIDIGIPDATGRLE---VLRIHTKNMKLHEDVDLEQIAAETHGHVGADLAS 410 Query: 200 YIVQRMERSLVFAEKLVDKMD 220 S +++ +KMD Sbjct: 411 LC------SEAALQQIREKMD 425 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 507 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKA 563 >gi|145252200|ref|XP_001397613.1| vacuolar protein sorting-associated protein 4 [Aspergillus niger CBS 513.88] gi|134083158|emb|CAK48610.1| unnamed protein product [Aspergillus niger] Length = 434 Score = 41.7 bits (97), Expect = 0.11, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 14/80 (17%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + ++L GP G+GKS LA + ++ ST FS + L S + + ++ Sbjct: 164 PWKGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESERLV---------- 213 Query: 123 DTQLFHIINSIHQYDSSLLM 142 QLF N + +++ Sbjct: 214 -KQLF---NMARENKPAIIF 229 >gi|47220389|emb|CAF98488.1| unnamed protein product [Tetraodon nigroviridis] Length = 499 Score = 41.7 bits (97), Expect = 0.11, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 7/79 (8%) Query: 65 RVVILVGPSGSGKSCLANIWSD---KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 IL GP G GK+ LA+I + + + RF ++ + S+ ++ L Sbjct: 196 PSFILWGPPGCGKTTLAHIIAGKCKRKGTARFVTLSATSASVSDVREVIKQAQNELRLCK 255 Query: 122 NDTQLF----HIINSIHQY 136 T LF H N Q Sbjct: 256 RKTVLFIDEIHRFNKSQQD 274 >gi|70999932|ref|XP_754683.1| vacuolar sorting ATPase Vps4 [Aspergillus fumigatus Af293] gi|66852320|gb|EAL92645.1| vacuolar sorting ATPase Vps4, putative [Aspergillus fumigatus Af293] gi|159127693|gb|EDP52808.1| vacuolar sorting ATPase Vps4, putative [Aspergillus fumigatus A1163] Length = 435 Score = 41.7 bits (97), Expect = 0.11, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 14/80 (17%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + ++L GP G+GKS LA + ++ ST FS + L S + + ++ Sbjct: 165 PWKGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESERLV---------- 214 Query: 123 DTQLFHIINSIHQYDSSLLM 142 QLF N + +++ Sbjct: 215 -KQLF---NMARENKPAIIF 230 >gi|302308248|ref|NP_985111.2| AER254Wp [Ashbya gossypii ATCC 10895] gi|299789363|gb|AAS52935.2| AER254Wp [Ashbya gossypii ATCC 10895] Length = 460 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 21/45 (46%) Query: 70 VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 GP G+GK+ LA + ++ +T A L + I ++ + Sbjct: 247 YGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMFIGEGAKLVRD 291 >gi|295689102|ref|YP_003592795.1| hypothetical protein Cseg_1694 [Caulobacter segnis ATCC 21756] gi|295431005|gb|ADG10177.1| conserved hypothetical protein [Caulobacter segnis ATCC 21756] Length = 1512 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 34/98 (34%), Gaps = 3/98 (3%) Query: 49 IEQAVRLID-SWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107 E A L W +R +++VG +GSGKS L D + + + Sbjct: 341 NEVARELAAAHWDHTQTRALLVVGAAGSGKSHLLADVCDLAIDNLAPAVMVLGGKLPDAE 400 Query: 108 RKPVLLEDIDLLDFND-TQLFHIINSI-HQYDSSLLMT 143 +L+D+DL +N+ L+ Sbjct: 401 PWAEILKDLDLPRGLQVQAFLGALNAAGQAAGVRALLA 438 >gi|156840873|ref|XP_001643814.1| hypothetical protein Kpol_1044p15 [Vanderwaltozyma polyspora DSM 70294] gi|156114440|gb|EDO15956.1| hypothetical protein Kpol_1044p15 [Vanderwaltozyma polyspora DSM 70294] Length = 839 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P+ V+ L GP G GK+ LA +++SR+ S Sbjct: 575 PAGVL-LWGPPGCGKTLLAKAVANESRANFIS 605 >gi|151945344|gb|EDN63587.1| 26S proteasome cap subunit component [Saccharomyces cerevisiae YJM789] Length = 437 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 23/52 (44%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + + + A + I ++ E Sbjct: 214 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIRE 265 >gi|91774045|ref|YP_566737.1| proteasome-activating nucleotidase [Methanococcoides burtonii DSM 6242] gi|91713060|gb|ABE52987.1| Proteasome-activating nucleotidase [Methanococcoides burtonii DSM 6242] Length = 426 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + ++ +T + L I ++ + Sbjct: 202 PPKGVLLFGPPGTGKTLLAKAVAHRTNATFIRVVGSELVQKYIGDGAKLVRD 253 >gi|50286221|ref|XP_445539.1| hypothetical protein [Candida glabrata CBS 138] gi|49524844|emb|CAG58450.1| unnamed protein product [Candida glabrata] Length = 834 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P V+ L GP G GK+ LA +++SR+ S Sbjct: 566 PGGVL-LWGPPGCGKTLLAKAVANESRANFIS 596 >gi|297537202|ref|YP_003672971.1| IstB domain-containing protein ATP-binding protein [Methylotenera sp. 301] gi|297538575|ref|YP_003674344.1| IstB domain-containing protein ATP-binding protein [Methylotenera sp. 301] gi|297539252|ref|YP_003675021.1| IstB domain-containing protein ATP-binding protein [Methylotenera sp. 301] gi|297256549|gb|ADI28394.1| IstB domain protein ATP-binding protein [Methylotenera sp. 301] gi|297257922|gb|ADI29767.1| IstB domain protein ATP-binding protein [Methylotenera sp. 301] gi|297258599|gb|ADI30444.1| IstB domain protein ATP-binding protein [Methylotenera sp. 301] Length = 257 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 58/144 (40%), Gaps = 24/144 (16%) Query: 32 FPRCLGISRDDLLVHSAIEQAVRLIDS-WPSWPSRVVILVGPSGSGKSCLANIWSDKS-- 88 FP ++ D SA E ++ + + ++ V+L+G G+GK+ LA ++ Sbjct: 65 FPVYRDLTGFDFSQSSANEPLIKQLHRCAFTEDAQNVVLIGGPGTGKTHLATAIGVQAIE 124 Query: 89 ----RSTRFSNIAKSLDSILIDTRK-----PVLLEDIDLLDFND-----------TQLFH 128 R FS I L L +DL+ ++ LFH Sbjct: 125 HHLKRVRFFSTIELVNTLELEKAAGKQGQLAFRLMYVDLVILDELGYLPFSQAGGALLFH 184 Query: 129 IINSIHQYDSSLLMTARTFPVSWG 152 +++ ++++ +S+++T WG Sbjct: 185 LLSKLYEH-TSVIITTNLGFAEWG 207 >gi|296413660|ref|XP_002836527.1| hypothetical protein [Tuber melanosporum Mel28] gi|295630354|emb|CAZ80718.1| unnamed protein product [Tuber melanosporum] Length = 560 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 PS V+ L GP G GK+ LA +++S + + Sbjct: 351 PSGVL-LWGPPGCGKTLLAKAIANESGANFIN 381 >gi|255534679|ref|YP_003095050.1| ATPase, AAA family [Flavobacteriaceae bacterium 3519-10] gi|255340875|gb|ACU06988.1| ATPase, AAA family [Flavobacteriaceae bacterium 3519-10] Length = 442 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 44/204 (21%), Positives = 78/204 (38%), Gaps = 36/204 (17%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRF-------------SNIAKSLDSILIDTRKPV 111 +I GP G+GK+ +A I S++S F I ++ L + P+ Sbjct: 59 NSLIFWGPPGTGKTTIAEIISEQSGRKFFKLSAVSSGVKDVREVIEEAKKQNLFSGKSPI 118 Query: 112 L-LEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR-----LKA 164 L +++I + + L H + +L+ A T S+ V L SR LK+ Sbjct: 119 LFIDEIHRFNKSQQDSLLH----AVEKGWIVLIGATTENPSFEVVSA-LLSRSQVYVLKS 173 Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK----MD 220 + K+ + L+ + +I + Y S A KL++ ++ Sbjct: 174 LSYEKLEELAELSLKNYNASHGTEFRIKDKEAFIQY-------SGGDARKLINSVENVLN 226 Query: 221 NLALSRGMGITRSLAAEVLKETQQ 244 N S I+ + EVL+ET Sbjct: 227 NFKNSDKKEISNADVLEVLQETMA 250 >gi|313125445|ref|YP_004035709.1| reca-superfamily ATPase possibly involved in signal transduction [Halogeometricum borinquense DSM 11551] gi|312291810|gb|ADQ66270.1| RecA-superfamily ATPase possibly involved in signal transduction [Halogeometricum borinquense DSM 11551] Length = 234 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 8/83 (9%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE----DIDL 118 P R+ +L GP GSGK+ ++ + + N + + ++R+ ++ + D Sbjct: 20 PGRLYVLSGPPGSGKT----TFTTQYVAEGLRNGENCMYITMHESREELVNDMSSYDFGF 75 Query: 119 LDFNDTQLFHIINSIHQYDSSLL 141 ++ F IN Q +L Sbjct: 76 ETLTESDQFRFINLASQKGKHVL 98 >gi|242011782|ref|XP_002426625.1| ATP-dependent metalloprotease, putative [Pediculus humanus corporis] gi|212510778|gb|EEB13887.1| ATP-dependent metalloprotease, putative [Pediculus humanus corporis] Length = 720 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 20/43 (46%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109 V+LVGP G+GK+ LA + ++ F D I + Sbjct: 324 VLLVGPPGTGKTLLARAIAGEANVPFFHASGSEFDEIFVGEGA 366 >gi|145550325|ref|XP_001460841.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124428672|emb|CAK93444.1| unnamed protein product [Paramecium tetraurelia] Length = 668 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 22/48 (45%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 ++LVGP G+GK+ LA + ++ F D + + + E Sbjct: 274 ILLVGPPGTGKTLLARALAGEAGCAFFYKSGSEFDEMFVGVGASRVRE 321 >gi|145546005|ref|XP_001458686.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124426507|emb|CAK91289.1| unnamed protein product [Paramecium tetraurelia] Length = 647 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 22/48 (45%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 ++LVGP G+GK+ LA + ++ F D + + + E Sbjct: 253 ILLVGPPGTGKTLLARALAGEAGCAFFYKSGSEFDEMFVGVGASRVRE 300 >gi|145543416|ref|XP_001457394.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124425210|emb|CAK89997.1| unnamed protein product [Paramecium tetraurelia] Length = 673 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 22/48 (45%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 ++LVGP G+GK+ LA + ++ F D + + + E Sbjct: 279 ILLVGPPGTGKTLLARALAGEAGCAFFYKSGSEFDEMFVGVGASRVRE 326 >gi|55378540|ref|YP_136390.1| holliday junction DNA helicase [Haloarcula marismortui ATCC 43049] gi|55231265|gb|AAV46684.1| holliday junction DNA helicase [Haloarcula marismortui ATCC 43049] Length = 850 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 26/154 (16%), Positives = 53/154 (34%), Gaps = 38/154 (24%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILIDTRKP 110 ++L GP G GK+ LA + + + N+A+ + + Sbjct: 625 LLLYGPPGCGKTHLAGALAGELGHSFVEISPADVTSKWMGEPARNVAEVFEVARANAPCV 684 Query: 111 VLLEDIDLLDF--------NDTQLFHIINSIH------QYDSSLLMTARTFPVSWGVCLP 156 + +++ID + ++ QL +N + D +++ A F L Sbjct: 685 LFIDEIDGIAGSRRGSMNTSEQQL---VNQLLTELEGAAADDIVVVAATNFVEDIDTALR 741 Query: 157 DLCS-RLKAATVVKISLPDDDFLEKVIVKMFADR 189 S R V++ PD +++ DR Sbjct: 742 --RSGRFDE--RVEVPPPDAKARRQILEIHLQDR 771 >gi|84996219|ref|XP_952831.1| 26S proteasome ATPase subunit [Theileria annulata strain Ankara] gi|65303829|emb|CAI76206.1| 26S proteasome ATPase subunit, putative [Theileria annulata] Length = 448 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA ++ +A ++ I ++ E Sbjct: 225 PPKGVLLYGPPGTGKTLLARALANDLGCNFLKVVASAVVDKYIGESAKIIRE 276 >gi|71028288|ref|XP_763787.1| 26S proteasome regulatory subunit [Theileria parva strain Muguga] gi|68350741|gb|EAN31504.1| 26S proteasome regulatory subunit, putative [Theileria parva] Length = 415 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA ++ +A ++ I ++ E Sbjct: 192 PPKGVLLYGPPGTGKTLLARALANDLGCNFLKVVASAVVDKYIGESAKIIRE 243 >gi|327334838|gb|EGE76549.1| putative cell division protein [Propionibacterium acnes HL097PA1] Length = 711 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 51/165 (30%), Gaps = 47/165 (28%) Query: 67 VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110 V+L GP G+GK+ LA + ++ S + + Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAPAI 262 Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + D + L + ++ + +L+ A P L Sbjct: 263 IFIDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDVHGGVILIAATNRPDVLDPAL 322 Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVK 184 PDL RLK V P DD + + + Sbjct: 323 LRPGRFDRQIAVEAPDLDGRLKILKVHAHGKPMADDVDMASIARR 367 >gi|294101443|ref|YP_003553301.1| AAA ATPase central domain protein [Aminobacterium colombiense DSM 12261] gi|293616423|gb|ADE56577.1| AAA ATPase central domain protein [Aminobacterium colombiense DSM 12261] Length = 424 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 25/155 (16%), Positives = 54/155 (34%), Gaps = 24/155 (15%) Query: 68 ILVGPSGSGKSCLANIWS-----DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 +L GP G GK+ L + + S L ++ + + +L + F Sbjct: 49 VLYGPPGVGKTTLVRLMAMVTERSLLEINAVSAKVSELRDLVEEAKNLKILSGSAAIAFV 108 Query: 123 DTQLFHIINSIHQY-------DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 D ++H N Q +++ T W L SRL V ++ + Sbjct: 109 DE-IYH-FNKSQQNALLPSVEKGDIILVGTTTENPWFEINKTLLSRL---VVFQLKPLAE 163 Query: 176 DFLEKVIVKMFADR-------QIFIDKKLAAYIVQ 203 + L +++ K D ++ + + + + + Sbjct: 164 EDLVQILYKALKDEEKGLGALKLAVSEDVITVLAK 198 >gi|226944894|ref|YP_002799967.1| recombination factor protein RarA [Azotobacter vinelandii DJ] gi|226719821|gb|ACO78992.1| recombination factor protein RarA [Azotobacter vinelandii DJ] Length = 441 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 31/187 (16%), Positives = 62/187 (33%), Gaps = 30/187 (16%) Query: 57 DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 ++ +I GP G GK+ LA + + + + F I+ L + + + Sbjct: 40 EALEQGALHSMIFWGPPGVGKTTLARLLAKVTDAH-FETISAVLAGVKEIRQAVEIARQQ 98 Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162 T LF H N Q D +L+ T L SR Sbjct: 99 AAQHGRRTILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154 Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLV 216 A V + D+ L ++ + + R + + + ++ + +L+ Sbjct: 155 --ARVYVLKSLDEAALRRLAERALGEERGLGGRHLSLPEDSLRMLLAAAD---GDGRRLL 209 Query: 217 DKMDNLA 223 + ++N A Sbjct: 210 NLLENAA 216 >gi|222637668|gb|EEE67800.1| hypothetical protein OsJ_25538 [Oryza sativa Japonica Group] Length = 784 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 55/164 (33%), Gaps = 45/164 (27%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS----------------ILID 106 P + ++L GP G+GK+ LA + ++ + + S+ S Sbjct: 516 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIASKWFGEGEKYVKAVFSLASKI 575 Query: 107 TRKPVLLEDIDLL------DFNDTQLFHIIN---------SIHQYDSSLLMTA------- 144 + ++++D + + + N + L++ A Sbjct: 576 APSVIFVDEVDGMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 635 Query: 145 -----RTFPVSWGVCLPDLCSR--LKAATVVKISLPDDDFLEKV 181 R P V LPD +R + + + K L DD LE + Sbjct: 636 DEAVVRRLPRRLMVNLPDASNRKKILSVILAKEDLADDVDLEAL 679 >gi|218200238|gb|EEC82665.1| hypothetical protein OsI_27291 [Oryza sativa Indica Group] Length = 1081 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 55/164 (33%), Gaps = 45/164 (27%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS----------------ILID 106 P + ++L GP G+GK+ LA + ++ + + S+ S Sbjct: 813 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIASKWFGEGEKYVKAVFSLASKI 872 Query: 107 TRKPVLLEDIDLL------DFNDTQLFHIIN---------SIHQYDSSLLMTA------- 144 + ++++D + + + N + L++ A Sbjct: 873 APSVIFVDEVDGMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 932 Query: 145 -----RTFPVSWGVCLPDLCSR--LKAATVVKISLPDDDFLEKV 181 R P V LPD +R + + + K L DD LE + Sbjct: 933 DEAVVRRLPRRLMVNLPDASNRKKILSVILAKEDLADDVDLEAL 976 >gi|195432950|ref|XP_002064478.1| GK23803 [Drosophila willistoni] gi|194160563|gb|EDW75464.1| GK23803 [Drosophila willistoni] Length = 397 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + + ++ ++ I ++ E Sbjct: 174 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 225 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 226 ------MFNYARDHQ 234 >gi|115727595|ref|XP_783032.2| PREDICTED: similar to spastic paraplegia 4 (autosomal dominant; spastin) [Strongylocentrotus purpuratus] gi|115956139|ref|XP_001187782.1| PREDICTED: similar to spastic paraplegia 4 (autosomal dominant; spastin) [Strongylocentrotus purpuratus] Length = 505 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 31/50 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA +++S +T F+ A +L S + + ++ Sbjct: 317 PARGLLLFGPPGNGKTMLAKAVANESNATFFNISAATLTSKYVGEGEKLV 366 >gi|114620178|ref|XP_519765.2| PREDICTED: 26S protease regulatory subunit 10B-like [Pan troglodytes] Length = 389 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + ++ S+ I ++ E Sbjct: 166 PPKGCLLYGPPGTGKTLLARAIASQLDCNFLKVVSSSIVDKYIGESAHLIRE-------- 217 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 218 ------MFNYARDHQ 226 >gi|21226350|ref|NP_632272.1| cell division cycle protein [Methanosarcina mazei Go1] gi|20904601|gb|AAM29944.1| Cell division cycle protein [Methanosarcina mazei Go1] Length = 764 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 17/83 (20%) Query: 32 FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRV--------------VILVGPSGSGK 77 I DD+ + + L+ WP + V+L GP G+GK Sbjct: 480 LIEVPNIGWDDV---GGLGEVKELLKEAVEWPLKSPESYRNIGVEAPKGVLLYGPPGTGK 536 Query: 78 SCLANIWSDKSRSTRFSNIAKSL 100 + LA + +S + + L Sbjct: 537 TLLAKAIAHESDANFITAKGSDL 559 Score = 37.4 bits (86), Expect = 1.7, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 44/117 (37%), Gaps = 28/117 (23%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILIDTRKP 110 V+L GP G+GK+ LA +++S + S I + + + Sbjct: 253 VLLHGPPGTGKTMLAKAVANESDAYFISINGPEIMSKYYGESERAIREIFEDAEKNAPAI 312 Query: 111 VLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 + L++ID + QL +++ + + +++ + P + + L Sbjct: 313 IFLDEIDSIAPKRAEVTGEVERRVVAQLLSLMDGLKARKNVIVIGSTNRPEAIDIAL 369 >gi|115474007|ref|NP_001060602.1| Os07g0672500 [Oryza sativa Japonica Group] gi|33146850|dbj|BAC79845.1| putative MSP1(mitochondrial sorting of proteins) protein [Oryza sativa Japonica Group] gi|113612138|dbj|BAF22516.1| Os07g0672500 [Oryza sativa Japonica Group] Length = 1081 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 55/164 (33%), Gaps = 45/164 (27%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS----------------ILID 106 P + ++L GP G+GK+ LA + ++ + + S+ S Sbjct: 813 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIASKWFGEGEKYVKAVFSLASKI 872 Query: 107 TRKPVLLEDIDLL------DFNDTQLFHIIN---------SIHQYDSSLLMTA------- 144 + ++++D + + + N + L++ A Sbjct: 873 APSVIFVDEVDGMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 932 Query: 145 -----RTFPVSWGVCLPDLCSR--LKAATVVKISLPDDDFLEKV 181 R P V LPD +R + + + K L DD LE + Sbjct: 933 DEAVVRRLPRRLMVNLPDASNRKKILSVILAKEDLADDVDLEAL 976 >gi|159113196|ref|XP_001706825.1| Katanin [Giardia lamblia ATCC 50803] gi|157434925|gb|EDO79151.1| Katanin [Giardia lamblia ATCC 50803] Length = 509 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 16/40 (40%), Positives = 24/40 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P R V+L GP G+GK+ LA + ++ T FS A ++S Sbjct: 248 PWRGVLLFGPPGTGKTLLAKAIAMQAGFTFFSASASVIES 287 >gi|332299790|ref|YP_004441711.1| AAA ATPase central domain protein [Porphyromonas asaccharolytica DSM 20707] gi|332176853|gb|AEE12543.1| AAA ATPase central domain protein [Porphyromonas asaccharolytica DSM 20707] Length = 439 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 62/186 (33%), Gaps = 37/186 (19%) Query: 26 EQLFFSFPRCLGISRDDLLVH-----SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL 80 EQ+ + + V A +++ +IL GP G GK+ L Sbjct: 4 EQIPLAERMRPKTLEE--YVGQSHLVGANAPLRVMLER---GHIPSMILWGPPGVGKTTL 58 Query: 81 ANIWSD--KSRSTRFSNIAKSLDSILIDTRKP----------------VLLEDIDLLDFN 122 A + S + R S + + + ++ + +++I + Sbjct: 59 ARLLSQMMQCRCYSLSAVGSGVADVRKTLQEAKEAQSGLFSQHQGRPILFIDEIHRFSKS 118 Query: 123 DT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 L + + L+ A T S+ V P L SR V + + L ++ Sbjct: 119 QQDSLL----AAVEQGVVTLIGATTENPSFQVIHP-LLSR---CQVFVLKPLEPSDLSQL 170 Query: 182 IVKMFA 187 I ++FA Sbjct: 171 IDRVFA 176 >gi|325958393|ref|YP_004289859.1| Replication factor C large subunit [Methanobacterium sp. AL-21] gi|325329825|gb|ADZ08887.1| Replication factor C large subunit [Methanobacterium sp. AL-21] Length = 491 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 32/223 (14%), Positives = 81/223 (36%), Gaps = 40/223 (17%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSW-PSW----PSRVVILVGPSGSGKSCLANIWSDK-- 87 S + + I +W W S+ ++L+GP G+GK+ +A++ +++ Sbjct: 4 TEKYSPKNFDEVLGNVKIKDEILNWTEDWLLGKTSQCILLIGPPGTGKTTMAHLAANEFS 63 Query: 88 -------SRSTRFSNIAKSLDS------ILIDTRKPVLLEDIDLLDFND-----TQLFHI 129 S + + ++ + D K ++L+++D + N+ Sbjct: 64 EYIELNASDKRSYDILKNTIGESSLSKSLYGDGLKLIILDEVDGIHGNEDRGGTRA---- 119 Query: 130 INSIHQYD-SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 IN I + ++M A L L + + K+ + + ++ K+ Sbjct: 120 INQIVKDGKHPIIMMANDPYSK---RLQSLKPKCNTLIMRKVHT---NSIVSLLKKICVK 173 Query: 189 RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231 + ++ + + + RS ++ ++ +A IT Sbjct: 174 EGVEFEEHVIRNLAK---RSNGDLRTAINDLEVIA-RGQERIT 212 >gi|330795954|ref|XP_003286035.1| 26S protease regulatory subunit S10B [Dictyostelium purpureum] gi|325084033|gb|EGC37471.1| 26S protease regulatory subunit S10B [Dictyostelium purpureum] Length = 393 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + + ++ ++ I V+ E Sbjct: 170 PPKGVLLYGPPGTGKTLLARAIASNLEANFLKVVSSAIVDKYIGESARVIRE 221 >gi|323337945|gb|EGA79184.1| Sap1p [Saccharomyces cerevisiae Vin13] Length = 897 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 29/50 (58%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P R ++L GP G+GK+ LA + +S ST FS A SL S + + ++ Sbjct: 637 PVRGMLLFGPPGTGKTMLARAVATESHSTFFSISASSLTSKYLGESEKLV 686 >gi|322711614|gb|EFZ03187.1| 26S protease regulatory subunit 6A [Metarhizium anisopliae ARSEF 23] Length = 458 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 54/160 (33%), Gaps = 38/160 (23%) Query: 70 VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113 GP G+GK+ LA + ++ +T L + I ++ + Sbjct: 245 YGPPGTGKTLLARACAAQTDATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPAIIFI 304 Query: 114 EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158 +++D + + ++N D ++ A L L Sbjct: 305 DELDAVGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRIKVLAATNRVDVLDPAL--L 362 Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 S RL ++ LP+++ +++ R++ +D + Sbjct: 363 RSGRLD--RKIEFPLPNEEARAQIL--KIHSRKMKVDPGV 398 >gi|315586413|gb|ADU40794.1| crossover junction endodeoxyribonuclease ATPase [Helicobacter pylori 35A] Length = 391 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 32/189 (16%), Positives = 70/189 (37%), Gaps = 25/189 (13%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILI--------DTRKPVLLE 114 GP G GK+ LA I + F+ L+ + + + V ++ Sbjct: 38 PHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRLKLKNYQNTLLKPVVFID 97 Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 + L+ + I + D +L++ A T ++ + + SR + + +++ + Sbjct: 98 ETHRLNKTQQEFLLPI---MEKDHALILGASTQDPNYSLSHA-IRSR---SFIFELTPLN 150 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234 L+K+ K + I+ Y++ S A L++ +D A I + Sbjct: 151 KSDLDKLCAKALILLKKQIEPSAKTYLLNN---SAGDARALLNLLDLSA-----KIEDPI 202 Query: 235 AAEVLKETQ 243 E L+ + Sbjct: 203 TLETLQSLR 211 >gi|260593081|ref|ZP_05858539.1| ATPase, AAA family [Prevotella veroralis F0319] gi|260534967|gb|EEX17584.1| ATPase, AAA family [Prevotella veroralis F0319] Length = 400 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 66/184 (35%), Gaps = 28/184 (15%) Query: 54 RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--SRSTRFSNIAKSLDSI-------- 103 R+ID S IL GP G GK+ LA I + + + S + + + Sbjct: 31 RMID---SGHISSFILWGPPGVGKTTLAQIIAHQLETPFYTLSAVTSGVKDVREVIERAK 87 Query: 104 ---LIDTRKPVL-LEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158 ++ P+L +++I + L + L+ A T S+ V P L Sbjct: 88 SGRFFNSVSPILFIDEIHRFSKSQQDSLL----GAVERGVVTLIGATTENPSFEVIRP-L 142 Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQRMERSLVFAEKL 215 SR + + + DD L V + D +++ I +++ + Sbjct: 143 LSRCQLYVLKSLEK--DDLLRLVQRAITEDTELKKLTIKLSETTALLRYSGGDARKLLNI 200 Query: 216 VDKM 219 +D + Sbjct: 201 IDLL 204 >gi|256271139|gb|EEU06232.1| Sap1p [Saccharomyces cerevisiae JAY291] Length = 897 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 29/50 (58%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P R ++L GP G+GK+ LA + +S ST FS A SL S + + ++ Sbjct: 637 PVRGMLLFGPPGTGKTMLARAVATESHSTFFSISASSLTSKYLGESEKLV 686 >gi|207345974|gb|EDZ72614.1| YER047Cp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 897 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 29/50 (58%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P R ++L GP G+GK+ LA + +S ST FS A SL S + + ++ Sbjct: 637 PVRGMLLFGPPGTGKTMLARAVATESHSTFFSISASSLTSKYLGESEKLV 686 >gi|151944758|gb|EDN63017.1| AAA ATPase [Saccharomyces cerevisiae YJM789] gi|190405609|gb|EDV08876.1| AAA ATPase [Saccharomyces cerevisiae RM11-1a] Length = 897 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 29/50 (58%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P R ++L GP G+GK+ LA + +S ST FS A SL S + + ++ Sbjct: 637 PVRGMLLFGPPGTGKTMLARAVATESHSTFFSISASSLTSKYLGESEKLV 686 >gi|94969641|ref|YP_591689.1| recombination factor protein RarA [Candidatus Koribacter versatilis Ellin345] gi|94551691|gb|ABF41615.1| Recombination protein MgsA [Candidatus Koribacter versatilis Ellin345] Length = 447 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 68/201 (33%), Gaps = 34/201 (16%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD--FN 122 +I GP G GK+ LA I + + + A I ++ D + + Sbjct: 53 GSLIFWGPPGVGKTTLAKIIAAMTHADFIEFSAVLSGIKEIKQ----VMADAERVRQYGT 108 Query: 123 DTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 T LF H N + + L+ A T S+ V L SR + V + Sbjct: 109 RTILFVDEIHRFNRAQQDAFLPHVERGNIKLIGATTENPSFEVNSA-LLSR---SRVYTL 164 Query: 171 SLPDDDFLEKVIVKMFAD--RQIF-IDKKLAAYIVQRM-------ERSLVFAEKLVDKMD 220 + ++ + ++ + D R + + + R+ RS ++ + Sbjct: 165 TPLTEEQIVGLLRRALTDTERGLAELHVTAEDIALARIAAYASGDARSGYNVLEVAAQ-- 222 Query: 221 NLALSRGMGITRSLAAEVLKE 241 + IT + A+ L+ Sbjct: 223 AAGATSERIITEQIVADALQR 243 >gi|50290781|ref|XP_447823.1| hypothetical protein [Candida glabrata CBS 138] gi|49527134|emb|CAG60772.1| unnamed protein product [Candida glabrata] Length = 935 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 29/50 (58%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P R ++L GP G+GK+ LA + +S ST FS A SL S + + ++ Sbjct: 684 PVRGMLLFGPPGTGKTMLARAVATESHSTFFSISASSLTSKYLGESEKLV 733 >gi|6320887|ref|NP_010966.1| Sap1p [Saccharomyces cerevisiae S288c] gi|731461|sp|P39955|SAP1_YEAST RecName: Full=Protein SAP1; AltName: Full=SIN1-associated protein gi|603280|gb|AAB64582.1| Yer047cp [Saccharomyces cerevisiae] gi|285811674|tpg|DAA07702.1| TPA: Sap1p [Saccharomyces cerevisiae S288c] Length = 897 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 29/50 (58%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P R ++L GP G+GK+ LA + +S ST FS A SL S + + ++ Sbjct: 637 PVRGMLLFGPPGTGKTMLARAVATESHSTFFSISASSLTSKYLGESEKLV 686 >gi|6324833|ref|NP_014902.1| Rpt4p [Saccharomyces cerevisiae S288c] gi|2506090|sp|P53549|PRS10_YEAST RecName: Full=26S protease subunit RPT4; AltName: Full=26S protease subunit SUG2; AltName: Full=Proteasomal cap subunit gi|1420585|emb|CAA99481.1| CRL13 [Saccharomyces cerevisiae] gi|1931623|gb|AAB51594.1| proteasome cap subunit [Saccharomyces cerevisiae] gi|190407563|gb|EDV10830.1| 26S proteasome cap subunit component [Saccharomyces cerevisiae RM11-1a] gi|256269612|gb|EEU04894.1| Rpt4p [Saccharomyces cerevisiae JAY291] gi|259149735|emb|CAY86539.1| Rpt4p [Saccharomyces cerevisiae EC1118] gi|285815133|tpg|DAA11026.1| TPA: Rpt4p [Saccharomyces cerevisiae S288c] gi|323302973|gb|EGA56777.1| Rpt4p [Saccharomyces cerevisiae FostersB] gi|323331571|gb|EGA72986.1| Rpt4p [Saccharomyces cerevisiae AWRI796] gi|323335464|gb|EGA76750.1| Rpt4p [Saccharomyces cerevisiae Vin13] gi|323346438|gb|EGA80726.1| Rpt4p [Saccharomyces cerevisiae Lalvin QA23] gi|323352176|gb|EGA84713.1| Rpt4p [Saccharomyces cerevisiae VL3] Length = 437 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 23/52 (44%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + + + A + I ++ E Sbjct: 214 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIRE 265 >gi|86135095|ref|ZP_01053677.1| Holliday junction ATP-dependent DNA helicase RuvB [Polaribacter sp. MED152] gi|85821958|gb|EAQ43105.1| Holliday junction ATP-dependent DNA helicase RuvB [Polaribacter sp. MED152] Length = 340 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 38/241 (15%), Positives = 77/241 (31%), Gaps = 46/241 (19%) Query: 38 ISRDDL------------LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 +S DD V +A ++ L + GP G GK+ LA+I + Sbjct: 26 LSFDDFTGQDQALENLKIFVEAANQRGEAL---------DHALFHGPPGLGKTTLAHILA 76 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLF------HIINSIHQYDSS 139 ++ + LD L++ D+L ++ ++ +++ Y Sbjct: 77 NELQVGIKVTSGPVLDKPGDLAGLLTNLDERDVLFIDEIHRLSPIVEEYLYSAMEDYKID 136 Query: 140 LLMTARTFPVSWGVCLPDL-------CS-------RLKAATVVKISLPDDDFLEKVIVKM 185 +++ + + + L S R + ++ + L +I + Sbjct: 137 IMIESGPNARTVQINLEPFTLIGATTRSGLLTAPMRARFGISSRLHYYSTELLTTIIQRS 196 Query: 186 FADRQIFIDKKLAAYIVQR---MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + Q+ I + A I R R + V D + IT +A LK Sbjct: 197 ASILQVPISMEAAVEIAGRSRGTPRIANALLRRVR--DFAQIKGDGKITIEIAKYALKAL 254 Query: 243 Q 243 Sbjct: 255 H 255 >gi|85717700|ref|ZP_01048635.1| putative transposase [Nitrobacter sp. Nb-311A] gi|85695475|gb|EAQ33398.1| putative transposase [Nitrobacter sp. Nb-311A] Length = 278 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 22/110 (20%) Query: 64 SRVVILVGPSGSGKSCLANIWS-------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 R V+LVG +G+GK+ LA + + R ++ L+ + R+ L E + Sbjct: 89 QRNVVLVGGTGTGKTHLAIAIARSCIRSGARGRFYNVVDLVNRLEIETRNGRQGRLAEHL 148 Query: 117 ---DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 D + ++ LFH+++ +++ +S+++T W Sbjct: 149 TRMDFIVLDELGYLPFAQSGGQLLFHLVSRLYER-ASVIVTTNLAFGEWP 197 >gi|84685387|ref|ZP_01013285.1| ATPase, AAA family protein [Maritimibacter alkaliphilus HTCC2654] gi|84666544|gb|EAQ13016.1| ATPase, AAA family protein [Rhodobacterales bacterium HTCC2654] Length = 436 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 65/191 (34%), Gaps = 29/191 (15%) Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 S +IL GP G GK+ +A + +D + A + D RK + Sbjct: 50 ASGSLGSLILWGPPGVGKTTIARLLADVTDLHFIQISAIFTG--VTDLRKVFEAAKMRRQ 107 Query: 120 DFNDTQLF----HIINSIHQYD-------SSLLM---TARTFPVSWGVCLPDLCSRLKAA 165 + T LF H N Q ++L+ T + SR + Sbjct: 108 NGKGTLLFVDEIHRFNKAQQDGFLPHMEDGTILLVGATTENPSFELNAAV---LSRAQVI 164 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD-------- 217 T+ ++ D + + + + DR + + + +++ + L++ Sbjct: 165 TLKRLEPADLERMAQRAEREL-DRALPLTGEGREALIEMADGDGRALLNLIEQVMAWRVD 223 Query: 218 -KMDNLALSRG 227 K+D AL+ Sbjct: 224 GKLDRDALATR 234 >gi|116670228|ref|YP_831161.1| AFG1 family ATPase [Arthrobacter sp. FB24] gi|116610337|gb|ABK03061.1| AFG1-family ATPase [Arthrobacter sp. FB24] Length = 345 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 12/98 (12%) Query: 67 VILVGPSGSGKSC-LANIWSDKSR----------STRFSNIAKSLDSILIDTRKPVLLED 115 + L G G GK+ LA++W + ++ + K V +++ Sbjct: 83 IYLDGGFGVGKTHLLASLWHASPGPKAFGTFVEYTNLVGALSFRKTVEALSNYKLVCIDE 142 Query: 116 IDLLDFNDTQLFH-IINSIHQYDSSLLMTARTFPVSWG 152 +L D DT L ++ + L T+ T P S G Sbjct: 143 FELDDPGDTVLMSRLMRELADAGVKLAATSNTLPGSLG 180 >gi|323307308|gb|EGA60588.1| Rpt4p [Saccharomyces cerevisiae FostersO] Length = 374 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 23/52 (44%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + + + A + I ++ E Sbjct: 214 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIRE 265 >gi|320168088|gb|EFW44987.1| proteasome 26S subunit [Capsaspora owczarzaki ATCC 30864] Length = 449 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 227 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 278 >gi|307190651|gb|EFN74615.1| 26S protease regulatory subunit S10B [Camponotus floridanus] Length = 389 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + + ++ ++ I ++ E Sbjct: 166 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 217 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 218 ------MFNYARDHQ 226 >gi|269139542|ref|YP_003296243.1| putative DNA recombination-associated ATPase RarA [Edwardsiella tarda EIB202] gi|267985203|gb|ACY85032.1| putative DNA recombination-associated ATPase RarA [Edwardsiella tarda EIB202] gi|304559431|gb|ADM42095.1| AAA family ATPase [Edwardsiella tarda FL6-60] Length = 447 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 66/199 (33%), Gaps = 38/199 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G+GK+ LA + + + R S + + I + + T Sbjct: 53 MILWGPPGTGKTTLAELIARYGHAEVERISAVTSGIKEIREAIERA----RHNRDAGRRT 108 Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N Q D ++ T L SR A V + Sbjct: 109 ILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSA---LLSR---ARVYLL 162 Query: 171 SLPDDDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRME----RSLVFAEKLVDKM 219 D + +V+ + DR+ + + + + + + R+L E + D + Sbjct: 163 KALDAQDIAQVVQQAMTDRERGYGAQDLTLPTETRDALAELVSGDARRALNTLEMMADMV 222 Query: 220 DNLALSRGMGITRSLAAEV 238 + A +T L V Sbjct: 223 EADA-QGQRVLTLDLLRSV 240 >gi|256545396|ref|ZP_05472759.1| AAA family ATPase [Anaerococcus vaginalis ATCC 51170] gi|256398957|gb|EEU12571.1| AAA family ATPase [Anaerococcus vaginalis ATCC 51170] Length = 443 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 66/170 (38%), Gaps = 27/170 (15%) Query: 68 ILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSI---LIDTRKPVLLEDIDLLDF- 121 I GP G GK+ LA I S+ + + S +A ++ + + + + E+ + F Sbjct: 56 IFYGPPGVGKTTLAKIISNSTNMAFEKVSAVASGINDLKKKIQIAKDNLKFENKKTILFI 115 Query: 122 NDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 ++ H N + + +L+ A T + V L SR+ V ++ Sbjct: 116 DEI---HRFNKSQQDYLLPFVEDSTIILIGATTENPYFEVNKA-LISRMY---VFELKAH 168 Query: 174 DDDFLEKVI------VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 DD L+K+I ++ ++ I ID +V+ ++ Sbjct: 169 TDDDLKKLIDMALSRDRLLQNKNIKIDDDARNTLVKYSNGDCRALLNALE 218 >gi|222445468|ref|ZP_03607983.1| hypothetical protein METSMIALI_01107 [Methanobrevibacter smithii DSM 2375] gi|222435033|gb|EEE42198.1| hypothetical protein METSMIALI_01107 [Methanobrevibacter smithii DSM 2375] Length = 492 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 16/83 (19%) Query: 55 LIDSW-PSWPSRVVILVGPSGSGKSCLANIWSD-------------KSRSTRFSNIAKSL 100 +D+W P + ++LVGP G GK+ LA + +S+ S I +S Sbjct: 28 WVDNWNAGNPQKPLLLVGPPGIGKTTLAQAIAREFSEYIELNASDKRSQDVIKSTIGESS 87 Query: 101 D--SILIDTRKPVLLEDIDLLDF 121 S+ D K ++L+++D + Sbjct: 88 SSKSLFGDDYKLLILDEVDGIHG 110 >gi|160331231|ref|XP_001712323.1| cdc48b [Hemiselmis andersenii] gi|159765770|gb|ABW97998.1| cdc48b [Hemiselmis andersenii] Length = 780 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 35/74 (47%), Gaps = 16/74 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP GSGK+ +A ++++ + F SN+ K+ + + Sbjct: 224 PPRGILMYGPPGSGKTLIARAVANEAGAFLFVINGPEIMSKLSGESESNLRKAFEEAEKN 283 Query: 107 TRKPVLLEDIDLLD 120 + + +++ID L Sbjct: 284 SPSIIFIDEIDSLA 297 Score = 39.4 bits (91), Expect = 0.43, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 497 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESESNVREVFDKA 553 >gi|150951678|ref|XP_001388033.2| member of the AAA ATPase family of proteins [Scheffersomyces stipitis CBS 6054] gi|149388797|gb|EAZ64010.2| member of the AAA ATPase family of proteins [Pichia stipitis CBS 6054] Length = 810 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 31/50 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S+ST FS A SL S + + ++ Sbjct: 560 PTRGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTSKYLGESEKLV 609 >gi|85717728|ref|ZP_01048661.1| putative transposase [Nitrobacter sp. Nb-311A] gi|85695458|gb|EAQ33383.1| putative transposase [Nitrobacter sp. Nb-311A] Length = 221 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 22/110 (20%) Query: 64 SRVVILVGPSGSGKSCLANIWS-------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 R V+LVG +G+GK+ LA + + R ++ L+ + R+ L E + Sbjct: 32 QRNVVLVGGTGTGKTHLAIAIARSCIRSGARGRFYNVVDLVNRLEIETRNGRQGRLAEHL 91 Query: 117 ---DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 D + ++ LFH+++ +++ +S+++T W Sbjct: 92 TRMDFIVLDELGYLPFAQSGGQLLFHLVSRLYER-ASVIVTTNLAFGEWP 140 >gi|125981363|ref|XP_001354688.1| GA17461 [Drosophila pseudoobscura pseudoobscura] gi|195164937|ref|XP_002023302.1| GL20276 [Drosophila persimilis] gi|54642999|gb|EAL31743.1| GA17461 [Drosophila pseudoobscura pseudoobscura] gi|194105407|gb|EDW27450.1| GL20276 [Drosophila persimilis] Length = 397 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + + ++ ++ I ++ E Sbjct: 174 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 225 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 226 ------MFNYARDHQ 234 >gi|332662477|ref|YP_004445265.1| IstB domain-containing protein ATP-binding protein [Haliscomenobacter hydrossis DSM 1100] gi|332664223|ref|YP_004447011.1| IstB domain-containing protein ATP-binding protein [Haliscomenobacter hydrossis DSM 1100] gi|332331291|gb|AEE48392.1| IstB domain protein ATP-binding protein [Haliscomenobacter hydrossis DSM 1100] gi|332333037|gb|AEE50138.1| IstB domain protein ATP-binding protein [Haliscomenobacter hydrossis DSM 1100] Length = 248 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 22/112 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDTR 108 +IL+G G+GK+ LAN ++ + +S + L ++L I Sbjct: 100 IILIGKPGTGKTHLANAIGLEAAARGYSVLFTHLHTLLEKLAQGRIDSSHRRTLQQILAP 159 Query: 109 KPVLLEDIDLLDFNDTQL---FHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 ++L++I L F II +++ S++ T+ WG L D Sbjct: 160 DLLILDEIGFRSLAPQALDDFFEIIRHRYEHKSTI-FTSNRNFEDWGAILGD 210 >gi|332030866|gb|EGI70502.1| 26S protease regulatory subunit S10B [Acromyrmex echinatior] Length = 393 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + + ++ ++ I ++ E Sbjct: 170 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 221 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 222 ------MFNYARDHQ 230 >gi|257091743|ref|YP_003165384.1| transposase/IS protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257092166|ref|YP_003165807.1| transposase/IS protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257092494|ref|YP_003166135.1| transposase/IS protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257093054|ref|YP_003166695.1| transposase/IS protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257093393|ref|YP_003167034.1| transposase/IS protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257095931|ref|YP_003169572.1| transposase/IS protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044267|gb|ACV33455.1| IstB domain protein ATP-binding protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044690|gb|ACV33878.1| IstB domain protein ATP-binding protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045018|gb|ACV34206.1| IstB domain protein ATP-binding protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045578|gb|ACV34766.1| IstB domain protein ATP-binding protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045917|gb|ACV35105.1| IstB domain protein ATP-binding protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048455|gb|ACV37643.1| IstB domain protein ATP-binding protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 261 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 53/149 (35%), Gaps = 39/149 (26%) Query: 67 VILVGPSGSGKSCLANIW---SDKSR----------------STRFSNIAKSLDSILIDT 107 V+LVGPSG GK+ LA + ++ + N K++ I Sbjct: 104 VVLVGPSGVGKTHLAIALGYRAAQAGIKTRFTTAADLLLTLSAAHAQNQLKAVMHRAIAA 163 Query: 108 RKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164 + +++++I L + Q F +I + SL++T+ W Sbjct: 164 YRLLIIDEIGYLPMSREQANLFFQVI-AARYEKGSLIVTSNLSFGQWD------------ 210 Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFI 193 AT + D ++ ++ QI Sbjct: 211 ATFAQ----DATLTAALLDRLLHHAQIVP 235 >gi|227501007|ref|ZP_03931056.1| cell division protein FtsH [Anaerococcus tetradius ATCC 35098] gi|227216780|gb|EEI82178.1| cell division protein FtsH [Anaerococcus tetradius ATCC 35098] Length = 655 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 45/140 (32%), Gaps = 45/140 (32%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ +A + ++ FS + + Sbjct: 209 VLLVGPPGTGKTLMAKAVAGEANVPFFSISGSEFVEMFVGMGASKVRDLFKQAKEKAPCI 268 Query: 111 VLLEDIDLL------------DFNDTQLFHIINS---IHQYDSSLLMTARTFPVSW---- 151 V +++ID + D + L ++N + +L+ A P Sbjct: 269 VFIDEIDAIGKKRDVSGYSGNDEREQTLNQLLNEMDGFDATEGVVLLAATNRPEILDPAL 328 Query: 152 ----------GVCLPDLCSR 161 V LPDL R Sbjct: 329 TRPGRFDRQVQVELPDLKGR 348 >gi|226371786|gb|ACO51518.1| LP16188p [Drosophila melanogaster] Length = 406 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + + ++ ++ I ++ E Sbjct: 183 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 234 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 235 ------MFNYARDHQ 243 >gi|195447510|ref|XP_002071246.1| GK25687 [Drosophila willistoni] gi|194167331|gb|EDW82232.1| GK25687 [Drosophila willistoni] Length = 397 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + + ++ ++ I ++ E Sbjct: 174 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 225 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 226 ------MFNYARDHQ 234 >gi|194763525|ref|XP_001963883.1| GF21021 [Drosophila ananassae] gi|190618808|gb|EDV34332.1| GF21021 [Drosophila ananassae] Length = 397 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + + ++ ++ I ++ E Sbjct: 174 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 225 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 226 ------MFNYARDHQ 234 >gi|239827838|ref|YP_002950462.1| recombination factor protein RarA [Geobacillus sp. WCH70] gi|239808131|gb|ACS25196.1| AAA ATPase central domain protein [Geobacillus sp. WCH70] Length = 430 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 28/193 (14%), Positives = 67/193 (34%), Gaps = 25/193 (12%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD---- 120 ++L G G GK+ LA+ + + F+ A + ++ ++E L Sbjct: 43 PSLLLYGEPGVGKTSLAHAIAGTVQRDFFAVNATTSGKKELEE----VVETAKLTGNVIL 98 Query: 121 -FNDTQLFHIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 ++ H N Q + + T + P + SR +K Sbjct: 99 FIDEI---HRFNKAQQDYLLPHIEQGLITLIGATTENPFHEVNPAIRSRCGQIKQLKRLE 155 Query: 173 PDDDFLEKVIVKMF--ADRQI-FIDKKLAAYIVQRM-ERSLVFAEKLVDKMDNLALSRGM 228 P D + ++ + DR + + + ++ + E S A ++ ++ + + Sbjct: 156 PADILI--LLQRALHDRDRGLGKLSIDMEERLLSMIAESSGGDARLALNLLEAIVYASEN 213 Query: 229 GITRSLAAEVLKE 241 +A + ++E Sbjct: 214 DGQIRVAEQTVRE 226 >gi|167563730|ref|ZP_02356646.1| recombination factor protein RarA [Burkholderia oklahomensis EO147] Length = 436 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 61/172 (35%), Gaps = 26/172 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA + + + A I + ++ + T L Sbjct: 50 MILWGPPGVGKTTLARLTALAFDCEFIALSAVLGGVKDIREAMDQARDTLNRTGRH-TIL 108 Query: 127 F----HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 F H N Q +LL + A T S+ V L SR A V + Sbjct: 109 FVDEIHRFNKAQQD--ALLPFVESGLVTFIGATTENPSFEVNSA-LLSR---AQVYLLKS 162 Query: 173 PDDDFLEKVIVKM--FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 +D L +++ + A + D K +V + A + ++ ++ Sbjct: 163 LTEDELRQLLARAQDTALAGLAFDDKAVDTLVGYAD---GDARRFLNLLEQA 211 >gi|126653989|ref|ZP_01725824.1| hypothetical protein BB14905_09600 [Bacillus sp. B14905] gi|126589506|gb|EAZ83649.1| hypothetical protein BB14905_09600 [Bacillus sp. B14905] Length = 420 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 31/211 (14%), Positives = 71/211 (33%), Gaps = 31/211 (14%) Query: 31 SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR- 89 + D + ++I + ++L G G GK+ +AN + S+ Sbjct: 3 PLTLDEIVGHQDFI--GPNTALYKMI---QNEHVPSMLLYGEPGIGKTSIANAIAGSSQL 57 Query: 90 --------STRFSNIAKSLDSILIDTRKPVLLEDIDLLDF--NDTQLFHIINSIHQYDSS 139 ++ + I + + L++I + DT L H+ N S Sbjct: 58 PFFALNATRAGKKDVEDIVQEARISGKVLLFLDEIHRFNKLQQDTLLPHVEN------GS 111 Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD--RQI-----F 192 +++ T + P + SR + ++ + L +++ K AD R + Sbjct: 112 IVLIGATTENPYHDVNPAIRSR--CGEIYQLKRLTKENLMELVEKALADEKRGLGKYHFV 169 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + +I + A L++ + + Sbjct: 170 LTPSQIEHIAEAANGDARKALTLLESIYYAS 200 >gi|77463057|ref|YP_352561.1| ATPase [Rhodobacter sphaeroides 2.4.1] gi|77387475|gb|ABA78660.1| ATPase [Rhodobacter sphaeroides 2.4.1] Length = 217 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 51/138 (36%), Gaps = 23/138 (16%) Query: 42 DLLVHSAIEQAVR-LIDSWPSWPSRVVILVGPSGSGKSCLANIWSD-------KSRSTRF 93 D E VR L R V+L+G +G+GKS LA + + R Sbjct: 50 DFTGTPVNEALVRELATRSLVADQRNVVLIGGTGTGKSHLAIAIARALIRNGTRGRFFNV 109 Query: 94 SNIAKSLDSILID---TRKPVLLEDIDLLDFND-----------TQLFHIINSIHQYDSS 139 ++ L++ R L +D + ++ LFH+I+ +++ +S Sbjct: 110 VDLVNKLEAETRSGKQGRTADYLGRLDFVILDELGYLPFAQAGGQLLFHLISRLYER-TS 168 Query: 140 LLMTARTFPVSWGVCLPD 157 +++T W D Sbjct: 169 IIVTTNLAFGEWPTVFGD 186 >gi|85717617|ref|ZP_01048558.1| putative transposase [Nitrobacter sp. Nb-311A] gi|85695582|gb|EAQ33499.1| putative transposase [Nitrobacter sp. Nb-311A] Length = 294 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 22/110 (20%) Query: 64 SRVVILVGPSGSGKSCLANIWS-------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 R V+LVG +G+GK+ LA + + R ++ L+ + R+ L E + Sbjct: 105 QRNVVLVGGTGTGKTHLAIAIARSCIRSGARGRFYNVVDLVNRLEIETRNGRQGRLAEHL 164 Query: 117 ---DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 D + ++ LFH+++ +++ +S+++T W Sbjct: 165 TRMDFIVLDELGYLPFAQSGGQLLFHLVSRLYER-ASVIVTTNLAFGEWP 213 >gi|313887680|ref|ZP_07821362.1| DNA replication protein DnaC [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846289|gb|EFR33668.1| DNA replication protein DnaC [Peptoniphilus harei ACS-146-V-Sch2b] Length = 318 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 21/107 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL--IDTRKPVLLED--------I 116 ++L GP+G GK+ L N + + + I ++ IL I+ RK +ED Sbjct: 184 LLLWGPTGQGKTFLLNCIAAELIKSDVIVIYQTAYEILKTIEDRKFKNIEDDKYNLYFEA 243 Query: 117 DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 DLL +D +++F+IIN+ L++ P Sbjct: 244 DLLIVDDLGIEFVNSFTASEIFNIINTRLLRGKKTLISTNLSPKELS 290 >gi|304387476|ref|ZP_07369667.1| replication-associated recombination protein A [Neisseria meningitidis ATCC 13091] gi|304338569|gb|EFM04688.1| replication-associated recombination protein A [Neisseria meningitidis ATCC 13091] Length = 436 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 40/134 (29%), Positives = 56/134 (41%), Gaps = 20/134 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L G G GK+ LA I + + A S + D R+ + +I L T L Sbjct: 50 MLLWGSPGVGKTTLARILAQSFNAQFLPVSAVF--SGVKDIREAIDKAEIALQQGRATIL 107 Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 F H N Q D+ L L+T A T S+ V P L SR A V + Sbjct: 108 FVDEVHRFNKAQQ-DAFLPYVENGLLTFIGATTENPSFEVN-PALLSR---AQVYVLQSL 162 Query: 174 DDDFLEKVIVKMFA 187 D L+K+I K+ A Sbjct: 163 SSDDLKKLIAKVLA 176 >gi|298674369|ref|YP_003726119.1| 26S proteasome subunit P45 family protein [Methanohalobium evestigatum Z-7303] gi|298287357|gb|ADI73323.1| 26S proteasome subunit P45 family [Methanohalobium evestigatum Z-7303] Length = 424 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 25/57 (43%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P V+L GP GSGK+ +A + ++ +T L I ++ + ++ Sbjct: 201 PPSGVLLYGPPGSGKTLIAKAVASQANATFIRMSGSDLVQKFIGEGARLVKDVFEMA 257 >gi|254719264|ref|ZP_05181075.1| recombination factor protein RarA [Brucella sp. 83/13] gi|265984263|ref|ZP_06096998.1| recombination factor protein RarA [Brucella sp. 83/13] gi|306838015|ref|ZP_07470873.1| recombination factor protein RarA [Brucella sp. NF 2653] gi|264662855|gb|EEZ33116.1| recombination factor protein RarA [Brucella sp. 83/13] gi|306406939|gb|EFM63160.1| recombination factor protein RarA [Brucella sp. NF 2653] Length = 437 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 28/182 (15%), Positives = 61/182 (33%), Gaps = 28/182 (15%) Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDID 117 S +I GP G+GK+ +A + + ++ + S I + + Sbjct: 49 ASGSLGSMIFWGPPGTGKTTVARLLAGETDLAFEQISAIFSGVADLKRVFEAA----RAR 104 Query: 118 LLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLK 163 + T LF H N + + +L+ T L SR Sbjct: 105 RMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVILIGATTENPSFELNAA---LLSR-- 159 Query: 164 AATVVKISLPDDDFLEKVIVKMFAD--RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 A V+ D + + ++ + + + +D + A +++ + A L +++ Sbjct: 160 -ARVLTFHPHDSESIATLLKRAEEQEGQGLPLDDEARASLIRMADGDGRAALTLAEEVWR 218 Query: 222 LA 223 A Sbjct: 219 AA 220 >gi|291288792|ref|YP_003505608.1| Holliday junction DNA helicase RuvB [Denitrovibrio acetiphilus DSM 12809] gi|290885952|gb|ADD69652.1| Holliday junction DNA helicase RuvB [Denitrovibrio acetiphilus DSM 12809] Length = 341 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 74/195 (37%), Gaps = 21/195 (10%) Query: 70 VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFH- 128 GP G GK+ LANI S + S +D +++ D+L ++ H Sbjct: 57 HGPPGLGKTTLANIISHELGVNINSTSGPVIDKAGDLAAILTNIQEGDVLFIDEIHRLHS 116 Query: 129 -----IINSIHQYDSSLLMTARTFPVSWGVCLPD------------LCS--RLKAATVVK 169 + ++ + +L+ + + LP L S R + +++ Sbjct: 117 NVEEILYPAMEDFKLDILIGQGPAARTVKIDLPPFTLIGATTRAGLLTSPLRDRFGMIMR 176 Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNLALSRGM 228 + D D L+ ++++ + I+ A I R + A +++ ++ D + Sbjct: 177 LEFYDVDELKHILLRGAGILEADIEDAAAEEIAGRSRGTPRIAHRILRRVRDFADILNNG 236 Query: 229 GITRSLAAEVLKETQ 243 IT +A E L+ + Sbjct: 237 QITLDMARESLRRLE 251 >gi|218884381|ref|YP_002428763.1| AAA family ATPase, CDC48 subfamily [Desulfurococcus kamchatkensis 1221n] gi|218765997|gb|ACL11396.1| AAA family ATPase, CDC48 subfamily [Desulfurococcus kamchatkensis 1221n] Length = 729 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 18/32 (56%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P R V+L GP G GK+ LA + +S + + Sbjct: 487 PPRGVLLYGPPGCGKTLLAKAVATESGANFIA 518 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 18/124 (14%), Positives = 44/124 (35%), Gaps = 31/124 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTR-- 108 P + ++L GP G+GK+ LA +++ + + + L I + Sbjct: 207 PPKGILLYGPPGTGKTLLAKALANEVNAYFVTINGPEIMSKYYGESEQRLREIFKLAKKK 266 Query: 109 -----KPVLLEDIDLLD------------FNDTQLFHIINSIHQYDSSLLMTARTFPVSW 151 + +++ID + QL +++ + + +++ A P + Sbjct: 267 SRKNPAIIFIDEIDAIAPKRDEVVGEVERRVVAQLLALMDGLESRGNVIVIAATNRPNAL 326 Query: 152 GVCL 155 L Sbjct: 327 DPAL 330 >gi|213970053|ref|ZP_03398185.1| ATPase, AAA family [Pseudomonas syringae pv. tomato T1] gi|301381409|ref|ZP_07229827.1| recombination factor protein RarA [Pseudomonas syringae pv. tomato Max13] gi|302058407|ref|ZP_07249948.1| recombination factor protein RarA [Pseudomonas syringae pv. tomato K40] gi|302130344|ref|ZP_07256334.1| recombination factor protein RarA [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213925157|gb|EEB58720.1| ATPase, AAA family [Pseudomonas syringae pv. tomato T1] Length = 440 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 36/210 (17%), Positives = 77/210 (36%), Gaps = 32/210 (15%) Query: 57 DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 ++ +I GP G GK+ LA + + S + F ++ L + + + + Sbjct: 40 EALEQGALHSMIFWGPPGVGKTTLARLLAKVSDAH-FETVSAVLAGVKEIRQAVEVAKQQ 98 Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162 T LF H N Q D +L+ T L SR Sbjct: 99 AGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154 Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLV 216 A V + D+ L K++ + + R++ + + A ++ + +++ Sbjct: 155 --ARVYVLKSLDEAALRKLVNRALTEDRGLGQRKLTLSDEGFAMLMAAAD---GDGRRML 209 Query: 217 DKMDNLA-LSR-GMGITRSLAAEVLKETQQ 244 + ++N + L+ G I L +L ++++ Sbjct: 210 NLLENASDLAEDGSEIDIELLQSLLGDSRR 239 >gi|254426145|ref|ZP_05039862.1| ATP-dependent metallopeptidase HflB subfamily [Synechococcus sp. PCC 7335] gi|196188568|gb|EDX83533.1| ATP-dependent metallopeptidase HflB subfamily [Synechococcus sp. PCC 7335] Length = 652 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 65/199 (32%), Gaps = 46/199 (23%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ FS A + + Sbjct: 211 VLLVGPPGTGKTLLARAIAGEAGVPFFSISASEFIEMFVGVGASRVRDLFEQAKQQAPCI 270 Query: 111 VLLEDIDLL----------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 V ++++D L ND QL ++ +L+ A P Sbjct: 271 VFIDELDALGKSRASNNRFAGNDEREQTLNQLLAEMDGFVPNAGVILLAATNRPEVLDPA 330 Query: 155 LPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLA-AYIVQRMERSLV 210 L L+A + + PD E ++ D + + + +A + R Sbjct: 331 L------LRAGRFDRRIVVDRPDKKGREAILAIHAKD--VHLAEDVALDKLAARTP-GFA 381 Query: 211 FAEKLVDKMDNLALSRGMG 229 A L + ++ AL Sbjct: 382 GA-DLANLVNEAALLAARR 399 >gi|92116492|ref|YP_576221.1| IstB-like ATP-binding protein [Nitrobacter hamburgensis X14] gi|92119172|ref|YP_578901.1| IstB-like ATP-binding protein [Nitrobacter hamburgensis X14] gi|91799386|gb|ABE61761.1| IstB-like ATP-binding protein [Nitrobacter hamburgensis X14] gi|91802066|gb|ABE64441.1| IstB-like ATP-binding protein [Nitrobacter hamburgensis X14] Length = 287 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 46/110 (41%), Gaps = 22/110 (20%) Query: 64 SRVVILVGPSGSGKSCLANIWS-------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 R +LVG +G+GK+ LA + + R ++ L+ + R+ + E + Sbjct: 98 QRNAVLVGGTGTGKTHLAIAIARSCIRSGARGRFYNVVDLVNRLEIETRNGRQGRIAEHL 157 Query: 117 ---DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 D + ++ LFH+++ +++ +S+++T W Sbjct: 158 TRMDFIVLDELGYLPFAQSGGQLLFHLVSRLYER-TSIVVTTNLAFGEWP 206 >gi|6324691|ref|NP_014760.1| Rpt5p [Saccharomyces cerevisiae S288c] gi|464859|sp|P33297|PRS6A_YEAST RecName: Full=26S protease regulatory subunit 6A; AltName: Full=Tat-binding protein homolog 1; Short=TBP-1 gi|313878|emb|CAA51971.1| YTA1 [Saccharomyces cerevisiae] gi|1050819|emb|CAA62114.1| ORF O3258 [Saccharomyces cerevisiae] gi|1164962|emb|CAA64037.1| YOR3258w [Saccharomyces cerevisiae] gi|1420311|emb|CAA99315.1| YTA1 [Saccharomyces cerevisiae] gi|151945739|gb|EDN63980.1| regulatory particle triple-a protein, or regulatory particle triphosphatase [Saccharomyces cerevisiae YJM789] gi|190407446|gb|EDV10713.1| 26S protease regulatory subunit 6A [Saccharomyces cerevisiae RM11-1a] gi|256272993|gb|EEU07957.1| Rpt5p [Saccharomyces cerevisiae JAY291] gi|259149600|emb|CAY86404.1| Rpt5p [Saccharomyces cerevisiae EC1118] gi|285814999|tpg|DAA10892.1| TPA: Rpt5p [Saccharomyces cerevisiae S288c] gi|323302883|gb|EGA56687.1| Rpt5p [Saccharomyces cerevisiae FostersB] gi|323307176|gb|EGA60459.1| Rpt5p [Saccharomyces cerevisiae FostersO] gi|323335519|gb|EGA76804.1| Rpt5p [Saccharomyces cerevisiae Vin13] gi|323352094|gb|EGA84631.1| Rpt5p [Saccharomyces cerevisiae VL3] Length = 434 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 54/160 (33%), Gaps = 38/160 (23%) Query: 70 VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113 GP G+GK+ LA + ++ +T A L + I ++ + Sbjct: 221 YGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFI 280 Query: 114 EDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSWGVCLPDL 158 +++D + + ++N + D ++ A L L Sbjct: 281 DELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPAL--L 338 Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 S RL ++ LP +D +++ R++ D + Sbjct: 339 RSGRLD--RKIEFPLPSEDSRAQILQ--IHSRKMTTDDDI 374 >gi|313499566|gb|ADR60932.1| AFG1-family ATPase [Pseudomonas putida BIRD-1] Length = 356 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 34/110 (30%), Gaps = 23/110 (20%) Query: 65 RVVILVGPSGSGKSCL----------------------ANIWSDKSRSTRFSNIAKSLDS 102 R + L G G GKS L A + R + + Sbjct: 65 RSLYLYGSVGRGKSWLLDGFFQAVPIAAKLRLHFHDFFARLHQGMHRHRALDDALGATLD 124 Query: 103 ILIDTRKPVLLEDIDLLDFNDTQLFH-IINSIHQYDSSLLMTARTFPVSW 151 L+ + + ++ + D D L + N++ LL+T+ P Sbjct: 125 ELVGGCQVLCFDEFHVHDIGDAMLLTRLFNALFARGVYLLVTSNYAPEGL 174 >gi|282896586|ref|ZP_06304604.1| AAA ATPase, central region protein [Raphidiopsis brookii D9] gi|281198528|gb|EFA73411.1| AAA ATPase, central region protein [Raphidiopsis brookii D9] Length = 615 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 51/154 (33%), Gaps = 46/154 (29%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS------------TRFSNIAKSLDSILIDTRKP-- 110 R ++L GP G+GK+ LA + ++R+ +++ + R+ Sbjct: 396 RGILLWGPPGTGKTLLAKAVASQARANFIGVNGPELLTRWVGASEQAVRELFAKARQADP 455 Query: 111 --VLLEDIDLLD-----------------------------FNDTQLFHIINSIHQYDSS 139 + +++ID L + + N D + Sbjct: 456 CVIFIDEIDTLAPARGTYTGDSGVSNRVVGQLLTELDGLETGTNILVIGATNRPDALDPA 515 Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 LL R + V LP+L SRL+ V P Sbjct: 516 LLRAGRLD-LQLKVDLPNLASRLEILRVYTEGRP 548 >gi|217033284|ref|ZP_03438715.1| hypothetical protein HP9810_9g37 [Helicobacter pylori 98-10] gi|216944225|gb|EEC23650.1| hypothetical protein HP9810_9g37 [Helicobacter pylori 98-10] Length = 391 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 32/189 (16%), Positives = 71/189 (37%), Gaps = 25/189 (13%) Query: 65 RVVILVGPSGSGKSCLANIWS--DKSRSTRFSNIAKSLDSILI--------DTRKPVLLE 114 GP G GK+ LA I + + F+ L+ + + + V ++ Sbjct: 38 PHAFFYGPPGVGKTSLAQIIACMLERPILLFNATDFKLEDLRLKLKNYQNTLLKPVVFID 97 Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 + L+ + I + D +L++ A T ++ + + SR + + +++ + Sbjct: 98 ETHRLNKTQQEFLLPI---MEKDHALILGASTQDPNYSLSHA-IRSR---SFIFELTPLN 150 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234 L+K+ K + I+ Y++ S A L++ +D A I + Sbjct: 151 KSDLDKLCAKALTLLKKQIEPSAKTYLLNN---SAGDARALLNLLDLSA-----KIEDPI 202 Query: 235 AAEVLKETQ 243 E L+ + Sbjct: 203 TLETLQSLR 211 >gi|195133630|ref|XP_002011242.1| GI16424 [Drosophila mojavensis] gi|193907217|gb|EDW06084.1| GI16424 [Drosophila mojavensis] Length = 397 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + + ++ ++ I ++ E Sbjct: 174 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 225 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 226 ------MFNYARDHQ 234 >gi|145551855|ref|XP_001461604.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124429439|emb|CAK94231.1| unnamed protein product [Paramecium tetraurelia] Length = 648 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 16/75 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 ++LVGP G+GK+ LA + ++ F D + + Sbjct: 254 ILLVGPPGTGKTLLARALAGEAGCAFFYKSGSEFDEMFVGVGASRVRDIFKAARAKAPSI 313 Query: 111 VLLEDIDLLDFNDTQ 125 + +++ID + Sbjct: 314 IFIDEIDSIGGRRRA 328 >gi|29841289|gb|AAP06321.1| similar to NM_007126 transitional endoplasmic reticulum ATPase [Schistosoma japonicum] Length = 308 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 47/116 (40%), Gaps = 28/116 (24%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A +++S S F SN+ K+ + + Sbjct: 19 PPRGILLYGPPGTGKTLVARAVANESGSFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 78 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVS 150 + ++++D + QL +++ + Q ++M A P S Sbjct: 79 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRSHVIVMAATNRPNS 134 >gi|1147800|gb|AAA85134.1| Sug2p [Saccharomyces cerevisiae] Length = 437 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 23/52 (44%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + + + A + I ++ E Sbjct: 214 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIRE 265 >gi|163848629|ref|YP_001636673.1| Holliday junction DNA helicase RuvB [Chloroflexus aurantiacus J-10-fl] gi|222526564|ref|YP_002571035.1| Holliday junction DNA helicase RuvB [Chloroflexus sp. Y-400-fl] gi|189046024|sp|A9WHF8|RUVB_CHLAA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|254767419|sp|B9LBR4|RUVB_CHLSY RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|163669918|gb|ABY36284.1| Holliday junction DNA helicase RuvB [Chloroflexus aurantiacus J-10-fl] gi|222450443|gb|ACM54709.1| Holliday junction DNA helicase RuvB [Chloroflexus sp. Y-400-fl] Length = 350 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 77/201 (38%), Gaps = 27/201 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 + GP G GK+ LAN+ +++ + +++ L+ D+L ++ Sbjct: 57 TLFYGPPGLGKTSLANVVANEMGAKIKITSGPAIERAGDLAAILTNLQANDVLFIDEV-- 114 Query: 127 FHIINSIHQ-------YDSSL-LMTARTF-PVSWGVCLPD------------LCS--RLK 163 H +N + D +L L+ + S + LP L S R + Sbjct: 115 -HRLNRAVEEVLYPAMEDFALDLVVGKGPGARSLRLNLPRFTVIGATTRLALLTSPLRDR 173 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNL 222 V ++ DD + +++ + + I + A I +R + A +++ ++ D Sbjct: 174 FVAVHRLVFYSDDAMTEIVSRSARILGVPISPEGAREIGRRARGTPRIANRILRRVRDYA 233 Query: 223 ALSRGMGITRSLAAEVLKETQ 243 + IT +A + L + + Sbjct: 234 QVVADGAITLQVARDALAQLE 254 >gi|325180998|emb|CCA15408.1| chromosome transmission fidelity protein putative [Albugo laibachii Nc14] Length = 875 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 4/53 (7%) Query: 54 RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSIL 104 R +D+ P ++++L GP G+GK+ LA+I + + + + +L Sbjct: 286 RHLDARPK--VKIILLCGPPGAGKTTLAHIIAKHAGYNAVEINASDDRTAQVL 336 >gi|317968012|ref|ZP_07969402.1| recombination factor protein RarA/unknown domain fusion protein [Synechococcus sp. CB0205] Length = 727 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 62/170 (36%), Gaps = 24/170 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +I GP G GK+ LA I + +R+ S A + +D + L Sbjct: 56 LIFYGPPGVGKTTLARIIAATTRAHFSSLNAVLAGVKDLRHEVDEAKRRLDQHGLR-SLL 114 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H NS + + L+ A T + V L SR + + ++ + Sbjct: 115 FIDEVHRFNSAQQDALLPWVENGTVTLIGATTENPFFEVNKA-LVSR---SRLFRLQPLE 170 Query: 175 DDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVD 217 + L +++ + DR+ + I + AA++V+ ++ Sbjct: 171 NRHLHQLLERALRDRERGYGERPVQISPEAAAHLVEVAGGDARSLLNALE 220 >gi|321250239|ref|XP_003191739.1| helicase [Cryptococcus gattii WM276] gi|317458206|gb|ADV19952.1| Helicase, putative [Cryptococcus gattii WM276] Length = 752 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Query: 61 SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 PS V+ L GP G GK+ LA +++SR+ S L + + + + Sbjct: 438 DAPSGVL-LWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAV 488 >gi|187735135|ref|YP_001877247.1| Holliday junction DNA helicase RuvB [Akkermansia muciniphila ATCC BAA-835] gi|238691873|sp|B2UPI9|RUVB_AKKM8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|187425187|gb|ACD04466.1| Holliday junction DNA helicase RuvB [Akkermansia muciniphila ATCC BAA-835] Length = 339 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 39/208 (18%), Positives = 68/208 (32%), Gaps = 35/208 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G GK+ LANI ++ + ++ LE D+L ++ Sbjct: 56 ILLSGPPGLGKTTLANIIANAVGCRIHTTSGPQIEKAGDLAGVLTNLEKGDILFIDEIHR 115 Query: 127 FH------IINSIHQYDSSLLMTARTFPVSWGVCL-------------------PDLCSR 161 H + ++ D L + P + + L P L SR Sbjct: 116 LHPAIEEYLYPAM--EDFRLDIIIDQGPNARSIQLNLPKFTLVGATTRAGMLTSP-LRSR 172 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR---MERSLVFAEKLVDK 218 V ++ + L +I + + +D + A I R R + V Sbjct: 173 F--GLVNRLDYYTREELCAIIERSAGLLNVPVDPEGALQIALRSRGTPRVANSLLRWVR- 229 Query: 219 MDNLALSRGMGITRSLAAEVLKETQQCD 246 D + IT LA + L + D Sbjct: 230 -DYAQVRGDGVITEQLAHDALTMIEIDD 256 >gi|171679990|ref|XP_001904941.1| hypothetical protein [Podospora anserina S mat+] gi|170939621|emb|CAP64848.1| unnamed protein product [Podospora anserina S mat+] Length = 1120 Score = 41.3 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 19/36 (52%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 +L GP G+GK+ LA + + + S + ++S Sbjct: 45 ALLYGPPGTGKTHLARVLAHEHELVMISVSSADIES 80 >gi|332185004|ref|ZP_08386753.1| ATPase associated with various cellular activities family protein [Sphingomonas sp. S17] gi|332014728|gb|EGI56784.1| ATPase associated with various cellular activities family protein [Sphingomonas sp. S17] Length = 447 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 6/75 (8%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G+GK+ +A + + + RF+ I+ + D +K T L Sbjct: 60 MILWGPPGTGKTTIARLLAAEVG-LRFAAISAVFSGVA-DLKKVFAEARDHARAGQRTLL 117 Query: 127 F----HIINSIHQYD 137 F H N Q Sbjct: 118 FVDEIHRFNRAQQDG 132 >gi|322707738|gb|EFY99316.1| DNA replication ATPase [Metarhizium anisopliae ARSEF 23] Length = 551 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 36/201 (17%), Positives = 68/201 (33%), Gaps = 35/201 (17%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS-----ILIDTRKPVLLEDIDLL 119 +IL G SG+GK+ +A + S A S + + + L Sbjct: 173 PSMILWGASGTGKTTIARCIAHMVGSRFIELNATSTGVSECKKLFQEAANELTL------ 226 Query: 120 DFNDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 T +F H N + + L+ A T S+ V L SR Sbjct: 227 TGRRTIIFCDEIHRFNKAQQDVFLKPVEAGTVTLIGATTENPSFKVANA-LLSR---CRT 282 Query: 168 VKISLPDDDFLEKVIVKMFADRQIF------IDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 + + + ++ + ++ ID ++ Y+ + + A L++ Sbjct: 283 FTLRSLTEQDITGILKRAREAEEVVYPPTPLIDDEMMGYLARFSDGDARTALNLLEV--A 340 Query: 222 LALSRGMGITRSLAAEVLKET 242 L+L+ GIT+ L +T Sbjct: 341 LSLTTREGITKEDIKSSLTKT 361 >gi|297280699|ref|XP_001096285.2| PREDICTED: nuclear VCP-like isoform 1 [Macaca mulatta] Length = 765 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 26/168 (15%), Positives = 58/168 (34%), Gaps = 42/168 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P R V+L GP G GK+ LA+ + + A + + + + Sbjct: 206 PPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFEQAVSN 265 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151 + +++ID + QL + N++ L++ A P S Sbjct: 266 APCIIFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSL 325 Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKK 196 L +A + + +P + E+++ + R++ + + Sbjct: 326 DPALR------RAGRFDREICLGIPGEASRERILQTLC--RKLRLPQA 365 Score = 38.2 bits (88), Expect = 0.99, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 49/160 (30%), Gaps = 36/160 (22%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK--------------PVL 112 V+L GP G GK+ LA +++S S L ++ + + P + Sbjct: 527 VLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCV 586 Query: 113 L--EDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWG--VCLP 156 + +++D L QL ++ + +M A P + P Sbjct: 587 IFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRP 646 Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK 196 RL V + P D I+K Sbjct: 647 ---GRLDKTLFVGLPPPTDRL---AILKTITKNGTKPPLD 680 >gi|289579864|ref|YP_003478330.1| ATPase AAA, CDC48 subfamily [Natrialba magadii ATCC 43099] gi|289529417|gb|ADD03768.1| AAA family ATPase, CDC48 subfamily [Natrialba magadii ATCC 43099] Length = 742 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 63/164 (38%), Gaps = 33/164 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P + V+L GP G+GK+ LA ++++ ++ FS + + + Sbjct: 222 PPQGVLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDASEE 281 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + ++++D + QL +++ + +++ A S Sbjct: 282 SPAIIFIDELDSIAPKREDVTGEVERRVVAQLLTMMDGLEARGQVIVIAATNRVDS---V 338 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198 P L + ++I +PD+ E+++ R + + +A Sbjct: 339 DPALRRPGRFDREIEIGVPDEVGREEILQ--IHTRGMPLSDDVA 380 Score = 36.7 bits (84), Expect = 3.4, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 19/32 (59%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P V+L GP G+GK+ +A ++++ + S Sbjct: 495 PPAGVLLYGPPGTGKTLMAKAVANETNANFIS 526 >gi|241236668|ref|XP_002400913.1| 26S protease regulatory subunit 6A, putative [Ixodes scapularis] gi|215496094|gb|EEC05735.1| 26S protease regulatory subunit 6A, putative [Ixodes scapularis] Length = 1014 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ +A + +++ST L + I ++ + Sbjct: 531 PPKGVLLYGPPGTGKTLMARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRD 582 >gi|195997743|ref|XP_002108740.1| conserved hypothetical protein [Trichoplax adhaerens] gi|190589516|gb|EDV29538.1| conserved hypothetical protein [Trichoplax adhaerens] Length = 387 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + + + ++ ++ I ++ E Sbjct: 164 PPKGVLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE 215 >gi|151941877|gb|EDN60233.1| cell division cycle-related protein [Saccharomyces cerevisiae YJM789] gi|190405128|gb|EDV08395.1| cell division control protein 48 [Saccharomyces cerevisiae RM11-1a] gi|256274085|gb|EEU08996.1| Cdc48p [Saccharomyces cerevisiae JAY291] gi|259145118|emb|CAY78382.1| Cdc48p [Saccharomyces cerevisiae EC1118] gi|323349430|gb|EGA83654.1| Cdc48p [Saccharomyces cerevisiae Lalvin QA23] gi|323355818|gb|EGA87631.1| Cdc48p [Saccharomyces cerevisiae VL3] Length = 835 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 64/166 (38%), Gaps = 50/166 (30%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R V++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 247 PPRGVLMYGPPGTGKTLMARAVANETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEKN 306 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + +++ID + QL +++ + + +++ A P S Sbjct: 307 APAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNVVVIAATNRPNSIDPA 366 Query: 152 -----------GVCLPDLCSRLKAATVVKIS-----LPDDDFLEKV 181 + +PD RL+ V++I L DD LE + Sbjct: 367 LRRFGRFDREVDIGIPDATGRLE---VLRIHTKNMKLADDVDLEAL 409 Score = 37.1 bits (85), Expect = 2.6, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 16/74 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 PS+ V+ GP G+GK+ LA + + + SNI D Sbjct: 520 PSKGVLFYGPPGTGKTLLAKAVATEVSANFISVKGPELLSMWYGESESNIRDIFDKARAA 579 Query: 107 TRKPVLLEDIDLLD 120 V L+++D + Sbjct: 580 APTVVFLDELDSIA 593 >gi|6320077|ref|NP_010157.1| Cdc48p [Saccharomyces cerevisiae S288c] gi|1705679|sp|P25694|CDC48_YEAST RecName: Full=Cell division control protein 48 gi|1431189|emb|CAA98694.1| CDC48 [Saccharomyces cerevisiae] gi|1449400|emb|CAA40276.1| CDC48p [Saccharomyces cerevisiae] gi|285810910|tpg|DAA11734.1| TPA: Cdc48p [Saccharomyces cerevisiae S288c] Length = 835 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 64/166 (38%), Gaps = 50/166 (30%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R V++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 247 PPRGVLMYGPPGTGKTLMARAVANETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEKN 306 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + +++ID + QL +++ + + +++ A P S Sbjct: 307 APAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNVVVIAATNRPNSIDPA 366 Query: 152 -----------GVCLPDLCSRLKAATVVKIS-----LPDDDFLEKV 181 + +PD RL+ V++I L DD LE + Sbjct: 367 LRRFGRFDREVDIGIPDATGRLE---VLRIHTKNMKLADDVDLEAL 409 Score = 37.1 bits (85), Expect = 2.6, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 16/74 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 PS+ V+ GP G+GK+ LA + + + SNI D Sbjct: 520 PSKGVLFYGPPGTGKTLLAKAVATEVSANFISVKGPELLSMWYGESESNIRDIFDKARAA 579 Query: 107 TRKPVLLEDIDLLD 120 V L+++D + Sbjct: 580 APTVVFLDELDSIA 593 >gi|311897757|dbj|BAJ30165.1| putative cell division protein FtsH [Kitasatospora setae KM-6054] Length = 669 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 37/215 (17%), Positives = 67/215 (31%), Gaps = 51/215 (23%) Query: 67 VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110 V+L GP G+GK+ LA + ++ S + + + Sbjct: 205 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKANAPAI 264 Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + D + L + ++ +L+ A P L Sbjct: 265 IFVDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDVKGGVILIAATNRPDILDPAL 324 Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVKMFADRQIFIDKKL-- 197 PDL RL V + P D L V + + L Sbjct: 325 LRPGRFDRQIAVDRPDLQGRLDILKVHQKGKPIAPDVDLSAVAKRTPGFTGADLSNVLNE 384 Query: 198 AAYIVQRMERSLVFAEKLVDKMDN--LALSRGMGI 230 AA + R E+ L+ + L + +D + I Sbjct: 385 AALLTARSEKKLIDNQTLDEAIDRVVAGPQKRSRI 419 >gi|291521790|emb|CBK80083.1| ATPase related to the helicase subunit of the Holliday junction resolvase [Coprococcus catus GD/7] Length = 444 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 57/157 (36%), Gaps = 28/157 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD--FNDT 124 +IL GP G+GK+ +A + ++ + + A ++ V+ E D + T Sbjct: 55 IILYGPPGTGKTTIAKVIANTTSAAFTQINATVAGKKDMEQ---VVQEAKDRMGMYGKRT 111 Query: 125 QLF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + + +L+ A T + V L SR + + ++ Sbjct: 112 ILFVDEIHRFNKGQQDYLLPFVEDGTLILIGATTENPYFEVNGA-LISR---SVIFELKP 167 Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIV 202 + + +I + D R + I ++ Sbjct: 168 LSAEDIGVLIRRAVYDTERGMGSYGAEISDDAVDFLA 204 >gi|257462825|ref|ZP_05627231.1| Holliday junction DNA helicase RuvB [Fusobacterium sp. D12] gi|317060454|ref|ZP_07924939.1| holliday junction DNA helicase ruvB [Fusobacterium sp. D12] gi|313686130|gb|EFS22965.1| holliday junction DNA helicase ruvB [Fusobacterium sp. D12] Length = 334 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 3/70 (4%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G GK+ LA + +++ S L+ LE+ D+L ++ Sbjct: 55 VLLYGPPGLGKTTLAGVIANEMGSNLKITSGPVLEKAGDLAAILTSLEENDVLFIDEI-- 112 Query: 127 FHIINSIHQY 136 H +N+ + Sbjct: 113 -HRLNTAVEE 121 >gi|197294533|ref|YP_001799074.1| ATP-dependent Zn protease [Candidatus Phytoplasma australiense] gi|171853860|emb|CAM11822.1| ATP-dependent Zn protease [Candidatus Phytoplasma australiense] Length = 647 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 57/163 (34%), Gaps = 40/163 (24%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+L GP G+GK+ LA + ++ F+ D + + Sbjct: 210 VLLYGPPGTGKTLLAKAVAGEAGVPFFAAAGSDFDEVYVGLGASRIRDLFKEAQLSAPCI 269 Query: 111 VLLEDIDLLD----------FNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCLPD 157 V +++I+ + +D L + ++ +Q +++ A P + + Sbjct: 270 VFIDEIEAVAKKRGSVMTSGGSDQTLNQLLVEMDGFNQKKGVIVIAATNRPETLDTAI-- 327 Query: 158 LCSRLKAA---TVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L+ ISLP+ E ++ +++ ++ Sbjct: 328 ----LRPGRFDRHFNISLPNVVDREAILKLHASNK--TFSDEV 364 >gi|156062042|ref|XP_001596943.1| hypothetical protein SS1G_01135 [Sclerotinia sclerotiorum 1980] gi|154696473|gb|EDN96211.1| hypothetical protein SS1G_01135 [Sclerotinia sclerotiorum 1980 UF-70] Length = 463 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 54/160 (33%), Gaps = 38/160 (23%) Query: 70 VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113 GP G+GK+ LA + ++ +T L + I ++ + Sbjct: 250 YGPPGTGKTLLARACAAQTDATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPAIIFI 309 Query: 114 EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158 +++D + + ++N D ++ A L L Sbjct: 310 DELDAVGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRIKVLAATNRVDVLDPAL--L 367 Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 S RL ++ LP+++ +++ R++ +D + Sbjct: 368 RSGRLD--RKIEFPLPNEEARAQIL--KIHSRKMTVDDAV 403 >gi|83815259|ref|YP_445272.1| Holliday junction DNA helicase B [Salinibacter ruber DSM 13855] gi|97190287|sp|Q2S3F9|RUVB_SALRD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|83756653|gb|ABC44766.1| Holliday junction DNA helicase RuvB [Salinibacter ruber DSM 13855] Length = 344 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 29/58 (50%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 V+L GP G GK+ LA+I +++ + ++ L+ LE+ DLL ++ Sbjct: 59 VLLSGPPGLGKTTLAHIIANEMGARIRTSSGPVLEKPADIAGVLTNLEEGDLLFIDEI 116 >gi|37521678|ref|NP_925055.1| recombination factor protein RarA/unknown domain fusion protein [Gloeobacter violaceus PCC 7421] gi|35212676|dbj|BAC90050.1| glr2109 [Gloeobacter violaceus PCC 7421] Length = 747 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 61/158 (38%), Gaps = 30/158 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN---D 123 +I GP G+GK+ LA I + +R+ + A I +++ Sbjct: 68 LIFYGPPGTGKTTLARIIAGTTRAHFIAINAVLAGVKDIRE----AIDEAKSRRGQFGRR 123 Query: 124 TQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 T LF H N + + +L+ A T + V L SR + + ++ Sbjct: 124 TILFVDEVHRFNKSQQDALLPWIENGTIVLVGATTENPFFEVNKA-LVSR---SRLFQLK 179 Query: 172 LPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIV 202 L + + L V ++ AD R + +D + A++V Sbjct: 180 LLESEDLRAVALQALADTERGYGKRNVRLDPEALAHLV 217 >gi|331017252|gb|EGH97308.1| recombination factor protein RarA [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 440 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 36/210 (17%), Positives = 77/210 (36%), Gaps = 32/210 (15%) Query: 57 DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 ++ +I GP G GK+ LA + + S + F ++ L + + + + Sbjct: 40 EALEQGALHSMIFWGPPGVGKTTLARLLAKVSDAH-FETVSAVLAGVKEIRQAVEVAKQQ 98 Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162 T LF H N Q D +L+ T L SR Sbjct: 99 AGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154 Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLV 216 A V + D+ L K++ + + R++ + + A ++ + +++ Sbjct: 155 --ARVYVLKSLDEAALRKLVNRALTEDRGLGQRKLTLSDEGFAMLMAAAD---GDGRRML 209 Query: 217 DKMDNLA-LSR-GMGITRSLAAEVLKETQQ 244 + ++N + L+ G I L +L ++++ Sbjct: 210 NLLENASDLAEDGSEIDIELLQSLLGDSRR 239 >gi|302855097|ref|XP_002959049.1| hypothetical protein VOLCADRAFT_70259 [Volvox carteri f. nagariensis] gi|300255615|gb|EFJ39910.1| hypothetical protein VOLCADRAFT_70259 [Volvox carteri f. nagariensis] Length = 196 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 56/153 (36%), Gaps = 14/153 (9%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + ++L GP G+GK+ LA + +SR+T S+ S+ + + + Sbjct: 5 PPKALLLFGPPGTGKTLLARAVATESRATFLPVTGDSVLSMWYGQSEQNVKALFEKARKR 64 Query: 123 DTQLFHIINSIHQ---------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 + I Q + +++ A P W + L SR + + + LP Sbjct: 65 QPAIIFIDEQAQQGPGGGGDGGDNRIVVIAATNTP--WDLDEAAL-SRF--SRRIYVPLP 119 Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206 D E ++ K + + +R + Sbjct: 120 DRGTREALMRKAMEGIACDVSDSAWQRLAERCD 152 >gi|225713006|gb|ACO12349.1| 26S protease regulatory subunit S10B [Lepeophtheirus salmonis] gi|290561741|gb|ADD38268.1| 26S protease regulatory subunit S10B [Lepeophtheirus salmonis] Length = 392 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + + ++ ++ I ++ E Sbjct: 169 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 220 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 221 ------MFNYARDHQ 229 >gi|195469930|ref|XP_002099889.1| GE16469 [Drosophila yakuba] gi|194187413|gb|EDX00997.1| GE16469 [Drosophila yakuba] Length = 397 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + + ++ ++ I ++ E Sbjct: 174 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 225 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 226 ------MFNYARDHQ 234 >gi|163751742|ref|ZP_02158960.1| hypothetical protein KT99_12234 [Shewanella benthica KT99] gi|161328394|gb|EDP99553.1| hypothetical protein KT99_12234 [Shewanella benthica KT99] Length = 441 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 55/153 (35%), Gaps = 21/153 (13%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------L 113 SR +++ GP G+GKS L + T A ++ + +I P L L Sbjct: 170 SSRPILIYGPPGTGKSYLCRNLNATLGDTVLIPYAIAVGTEIIQVYDPQLHHAVDNAIEL 229 Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV----- 168 + +DL+ +D + L +T D SR A + Sbjct: 230 DQLDLVKGHDP-------RWIECKRPLRITGGELSAEMLEVQFDSHSRTYMAPIQLKANN 282 Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 I L DD +++ K +R I ++ ++ Sbjct: 283 GILLLDDLGRQRISAKQLFNRWIIPMEEQRDFL 315 >gi|149641609|ref|XP_001512479.1| PREDICTED: similar to nuclear VCP-like protein NVLp.2 [Ornithorhynchus anatinus] Length = 677 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 56/168 (33%), Gaps = 42/168 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P R +L GP G GK+ LA + + A + + + Sbjct: 115 PPRGFLLHGPPGCGKTLLAQAIAGELDLPILKIAATEIVSGVSGESEQKLRELFEQAVSS 174 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151 + +++ID + QL + NS+ L++ A P S Sbjct: 175 APCILFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNSLAATAQVLVIGATNRPDSL 234 Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKK 196 L +A + + +PD+ E+++ + R++ + + Sbjct: 235 DPALR------RAGRFDREICLGIPDEASRERILQTLC--RKLRLPQS 274 Score = 36.3 bits (83), Expect = 3.5, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 22/46 (47%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 ++L GP G GK+ LA +++S S L ++ + + + Sbjct: 439 ILLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAV 484 >gi|114052605|ref|NP_001040484.1| 26S proteasome regulatory ATPase subunit 10B [Bombyx mori] gi|95103080|gb|ABF51481.1| 26S proteasome regulatory ATPase subunit 10B [Bombyx mori] Length = 396 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + + ++ ++ I ++ E Sbjct: 173 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 224 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 225 ------MFNYARDHQ 233 >gi|124087412|ref|XP_001346845.1| AAA ATPase, cell division control protein [Paramecium tetraurelia strain d4-2] gi|145474957|ref|XP_001423501.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|50057234|emb|CAH03218.1| AAA ATPase, cell division control protein, putative [Paramecium tetraurelia] gi|124390561|emb|CAK56103.1| unnamed protein product [Paramecium tetraurelia] Length = 632 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 18/32 (56%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P V+L GP G GK+ LA ++ SR+ + Sbjct: 406 PPAGVLLWGPPGCGKTLLAKAVANASRANFIA 437 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 29/76 (38%), Gaps = 20/76 (26%) Query: 67 VILVGPSGSGKSCLANIWSD------------KSRSTRFSNIAKSLD--------SILID 106 ++L G +G GK+ LA K+ + ++++ + + Sbjct: 148 ILLTGATGCGKTYLAKAICRDLYQQFKLNIFMKNGAEIVASLSGESEKNIRQLFQQAAQE 207 Query: 107 TRKPVLLEDIDLLDFN 122 V ++DID++ + Sbjct: 208 APSLVFIDDIDVIAGD 223 >gi|172056096|ref|YP_001812556.1| ATP-dependent metalloprotease FtsH [Exiguobacterium sibiricum 255-15] gi|171988617|gb|ACB59539.1| ATP-dependent metalloprotease FtsH [Exiguobacterium sibiricum 255-15] Length = 668 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 39/219 (17%), Positives = 69/219 (31%), Gaps = 59/219 (26%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ FS + + Sbjct: 200 VLLVGPPGTGKTLLARAAAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 259 Query: 111 VLLEDIDLLDFN------------DTQLFHII------------------NSIHQYDSSL 140 + +++ID + + L ++ N D +L Sbjct: 260 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFSENEGIIMIAATNRADILDPAL 319 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR-----QIFIDK 195 L R V PD+ R V+K+ + V +K A R ++ Sbjct: 320 LRPGRFD-RQITVERPDVVGR---EAVLKVHARNKPLDTTVDLKAIAQRTPGFSGADLEN 375 Query: 196 KL--AAYIVQRMERSLVFAEKLVDKMDN--LALSRGMGI 230 L AA I R +R + L + +D ++ I Sbjct: 376 LLNEAALIAARTDRDKISIVDLEEAIDRVIAGPAKKSRI 414 >gi|330835721|ref|YP_004410449.1| AAA family ATPase, CDC48 subfamily protein [Metallosphaera cuprina Ar-4] gi|329567860|gb|AEB95965.1| AAA family ATPase, CDC48 subfamily protein [Metallosphaera cuprina Ar-4] Length = 768 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 52/142 (36%), Gaps = 42/142 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTRKP 110 P + ++L GP G GK+ LA ++++ S + + L I D +K Sbjct: 224 PPKGIMLYGPPGVGKTLLAKAVANETESYFTSINGPEIMSKFYGESEQRLREIFEDAKKH 283 Query: 111 ----VLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFP------ 148 + ++++D + ++ QL +++ + + +++ A P Sbjct: 284 APAIIFIDEVDAIAPKRDEAIGEVERRVVAQLLTLMDGLENRGNVIVIAATNRPNAVDPA 343 Query: 149 --------VSWGVCLPDLCSRL 162 + LPD RL Sbjct: 344 LRRPGRFDREIEIPLPDKQGRL 365 Score = 37.4 bits (86), Expect = 1.7, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 19/32 (59%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + ++L GP G+GK+ LA + +S + + Sbjct: 497 PPKGILLFGPPGTGKTMLAKAVATESGANFIA 528 >gi|322710449|gb|EFZ02024.1| cell division protease ftsH [Metarhizium anisopliae ARSEF 23] Length = 808 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 21/100 (21%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID-------TRKPVLLEDID 117 R +L GP G+GKS L + + + + A S+D ++ R VLLEDID Sbjct: 176 RGYLLHGPPGTGKSSLGSAVAGEFNLDIYIISAPSVDDKTLEELFNSLPGRCVVLLEDID 235 Query: 118 LLDFNDTQ----------LFHIINS----IHQYDSSLLMT 143 + + L ++N+ Q L+MT Sbjct: 236 AIGTDRQGSDKKAKKALSLSGLLNTLDGVASQEGRVLIMT 275 >gi|301756719|ref|XP_002914210.1| PREDICTED: 26S protease regulatory subunit 10B-like [Ailuropoda melanoleuca] gi|281347245|gb|EFB22829.1| hypothetical protein PANDA_002073 [Ailuropoda melanoleuca] Length = 389 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + ++ S+ I ++ E Sbjct: 166 PPKGCLLYGPPGTGKTLLARAVASQLDCNLLKVVSSSIVDKYIGESACLIRE-------- 217 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 218 ------MFNYARDHQ 226 >gi|226314435|ref|YP_002774331.1| ABC transporter ATP binding protein [Brevibacillus brevis NBRC 100599] gi|226097385|dbj|BAH45827.1| probable ABC transporter ATP binding protein [Brevibacillus brevis NBRC 100599] Length = 227 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 16/61 (26%) Query: 66 VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125 V ++GPSGSGKS L +I L + T V+++ D+ ++T Sbjct: 35 FVAIIGPSGSGKSTLLHI----------------LGGVDTPTSGKVIVDQTDMYAMDETA 78 Query: 126 L 126 L Sbjct: 79 L 79 >gi|229818436|ref|ZP_04448717.1| hypothetical protein BIFANG_03743 [Bifidobacterium angulatum DSM 20098] gi|229784306|gb|EEP20420.1| hypothetical protein BIFANG_03743 [Bifidobacterium angulatum DSM 20098] Length = 692 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 25/62 (40%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 R V+L GP G+GK+ LA + ++ +S + + + + D N Sbjct: 246 RGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEMFVGLGASRVRDLFDEAKKNAP 305 Query: 125 QL 126 + Sbjct: 306 AI 307 >gi|206589995|emb|CAQ36956.1| hypothetical transposase (partial sequence) protein [Ralstonia solanacearum MolK2] Length = 599 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 23/162 (14%), Positives = 53/162 (32%), Gaps = 46/162 (28%) Query: 51 QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110 ++ I+ + V+L+GPSG GK+ +A+ + ++ + +++ Sbjct: 313 ASLAFIERAEN-----VVLLGPSGVGKTHIASALAYRATQAGIKTRFITAADLMMQLATA 367 Query: 111 -------------------VLLEDIDLLDF--NDTQLFHIINSI--HQYDSSLLMTARTF 147 +++++I L F + LF N + ++++T+ Sbjct: 368 RQQNRLREFFNRAVIGPRLLVIDEIGYLPFGREEADLF--FNVVAKRYERGAIVLTSNLP 425 Query: 148 PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 W D D ++ FA R Sbjct: 426 FTQWATAFAD----------------DQTLTAAMLDMAFASR 451 >gi|156087318|ref|XP_001611066.1| ATPase AAA type domain containing protein [Babesia bovis T2Bo] gi|154798319|gb|EDO07498.1| ATPase AAA type domain containing protein [Babesia bovis] Length = 707 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 21/38 (55%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P++ ++L GP GSGKS LA + ++ F A L Sbjct: 187 PTKGILLHGPPGSGKSRLAEAIAGEANCAFFRVAATEL 224 Score = 37.8 bits (87), Expect = 1.4, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 22/46 (47%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 ++L GP G GK+ LA ++ S++ S L + + + + Sbjct: 462 ILLYGPPGCGKTLLAKAVANGSKANFISVKGPELLNKYVGESERAV 507 >gi|28870511|ref|NP_793130.1| ATPase, AAA family [Pseudomonas syringae pv. tomato str. DC3000] gi|28853759|gb|AAO56825.1| ATPase, AAA family [Pseudomonas syringae pv. tomato str. DC3000] Length = 440 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 36/210 (17%), Positives = 77/210 (36%), Gaps = 32/210 (15%) Query: 57 DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 ++ +I GP G GK+ LA + + S + F ++ L + + + + Sbjct: 40 EALEQGALHSMIFWGPPGVGKTTLARLLAKVSDAH-FETVSAVLAGVKEIRQAVEVAKQQ 98 Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162 T LF H N Q D +L+ T L SR Sbjct: 99 AGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154 Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLV 216 A V + D+ L K++ + + R++ + + A ++ + +++ Sbjct: 155 --ARVYVLKSLDEAALRKLVNRALTEDRGLGQRKLTLSDEGFAMLMAAAD---GDGRRML 209 Query: 217 DKMDNLA-LSR-GMGITRSLAAEVLKETQQ 244 + ++N + L+ G I L +L ++++ Sbjct: 210 NLLENASDLAEDGSEIDIELLQSLLGDSRR 239 >gi|18312141|ref|NP_558808.1| replication factor C large subunit [Pyrobaculum aerophilum str. IM2] gi|42559512|sp|Q8ZYK3|RFCL_PYRAE RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|18159574|gb|AAL62990.1| replication factor C large subunit [Pyrobaculum aerophilum str. IM2] Length = 422 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 69/187 (36%), Gaps = 32/187 (17%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFS------NIAKSLDSILIDT---------- 107 ++ ++L GP G GK+ L + + + R A L ++ Sbjct: 56 AKAILLAGPPGVGKTTLVHALAREIRYELIELNASDVRTADRLRQVIGRGLRESSLFGFE 115 Query: 108 RKPVLLEDIDLLDFNDT--QLFHIINSIHQYDSSLLMTARTF--PVSWGVCLPDLCSRLK 163 K VL +++D L + L II I ++MTA P L D+ Sbjct: 116 GKMVLFDEVDGLHVKEDKGGLEEIIEIIETAKIPIIMTANNPYDPKFRP--LRDI----- 168 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + VV + ++ + +V+ ++ +++ I + S+ ++ + + Sbjct: 169 -SLVVNLKRLSEEEVVEVLRRICTSEGAKCEEEALRSIAKS---SMGDLRAAINDL-QMY 223 Query: 224 LSRGMGI 230 LS G I Sbjct: 224 LSGGRRI 230 >gi|63054529|ref|NP_593287.2| AAA family ATPase Cdc48 [Schizosaccharomyces pombe 972h-] gi|27151477|sp|Q9P3A7|CDC48_SCHPO RecName: Full=Cell division cycle protein 48 gi|159883922|emb|CAB99275.2| AAA family ATPase Cdc48 [Schizosaccharomyces pombe] Length = 815 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 49/121 (40%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 257 PPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 316 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + + ++M A P S Sbjct: 317 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSIDPA 376 Query: 155 L 155 L Sbjct: 377 L 377 >gi|313123479|ref|YP_004033738.1| ATP-dependent clp protease ATP-binding subunit clpx [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280042|gb|ADQ60761.1| ATP-dependent Clp protease ATP-binding subunit clpX [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 417 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 6/53 (11%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 + L+GP+GSGK+ LA I + R N+ ++ T + ED++ + Sbjct: 112 IALIGPTGSGKTYLAQILA------RILNVPFAIADATTLTEAGYVGEDVENI 158 >gi|296473933|gb|DAA16048.1| Werner helicase interacting protein 1 [Bos taurus] Length = 494 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 16/83 (19%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA+I ++ S+ ++ + K + D+ N+ Sbjct: 235 PSLILWGPPGCGKTTLAHIIANNSKKHSI-----RFVTLSATSAKTTDVRDVIKQAQNEK 289 Query: 125 QLF-----------HIINSIHQY 136 + F H N Q Sbjct: 290 RFFKRKTILFIDEIHRFNKSQQD 312 >gi|288924430|ref|ZP_06418417.1| IstB domain protein ATP-binding protein [Frankia sp. EUN1f] gi|288344222|gb|EFC78764.1| IstB domain protein ATP-binding protein [Frankia sp. EUN1f] Length = 272 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 56/144 (38%), Gaps = 31/144 (21%) Query: 30 FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA---NIWSD 86 F+ + R D+L H A V ++ VIL+GP G GK+ LA + + Sbjct: 92 FNLDHLPSLRR-DVLAHLATGTFVAKAEN--------VILLGPPGIGKTHLAIGLGVKAA 142 Query: 87 KSRSTRFSNIAKSLDSILIDTRKP---------------VLLEDIDLLDFNDTQ---LFH 128 ++ + + A + + L + ++++++ + F+ F Sbjct: 143 QAGCSVLFDTANNWITRLAAAHQAGHLDTELKKIRRYKLIIIDEVGYIPFDQDAANLFFQ 202 Query: 129 IINSIHQYDSSLLMTARTFPVSWG 152 ++ + S+L+T+ WG Sbjct: 203 LV-ASRYEQGSILVTSNLPFGRWG 225 >gi|160934386|ref|ZP_02081773.1| hypothetical protein CLOLEP_03258 [Clostridium leptum DSM 753] gi|156867059|gb|EDO60431.1| hypothetical protein CLOLEP_03258 [Clostridium leptum DSM 753] Length = 491 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 36/197 (18%), Positives = 73/197 (37%), Gaps = 24/197 (12%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTR-----FSNIAKSLDSILIDTRKPVLLEDIDLL 119 +I GPSG GK+ LA+I + ++ + L I + + LL Sbjct: 107 PNLIFYGPSGVGKTTLASIIARQTNRALRKLNGTTAGTADLREIFTEAENTFTAPNGILL 166 Query: 120 DFNDTQLFH------IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 ++ Q F+ ++ + L+ + T + V L SR +TV + Sbjct: 167 YLDEIQYFNKKQQQTLL-EFIENGKITLIASTTENPYFYVYNAIL-SR---STVFEFKTV 221 Query: 174 DDDFLEKVIVKMFA----DR--QIFIDKKLAAYIVQRMERSLVFAEKLVDK--MDNLALS 225 + + K + + F+ +R I+ + +I + A V+ + + A Sbjct: 222 EKAEVAKAVERAFSLLEEERGEGFQIEDGVVGHIALACGGDVRKAMNSVELCVLSSPAAD 281 Query: 226 RGMGITRSLAAEVLKET 242 IT A E+ +++ Sbjct: 282 GVRKITLETAKELTQKS 298 >gi|126460414|ref|YP_001056692.1| AAA family ATPase, CDC48 subfamily protein [Pyrobaculum calidifontis JCM 11548] gi|126250135|gb|ABO09226.1| AAA family ATPase, CDC48 subfamily [Pyrobaculum calidifontis JCM 11548] Length = 736 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 17/116 (14%), Positives = 45/116 (38%), Gaps = 28/116 (24%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTR-- 108 P + ++L+GP G+GK+ LA ++++ + + L I + + Sbjct: 210 PPKGILLIGPPGTGKTLLAKAVANEANAYFVAINGPEIMSKYYGESEARLREIFEEAKKN 269 Query: 109 --KPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVS 150 + +++ID + QL +++ + + +++ A P + Sbjct: 270 APAIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLQERGQVIVIGATNRPDA 325 Score = 36.7 bits (84), Expect = 3.0, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 18/38 (47%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P + ++L GP G GK+ A + +S + + L Sbjct: 498 PPKGILLFGPPGVGKTLFAKAVATESGANFIAVRGPEL 535 >gi|18313875|ref|NP_560542.1| AAA family ATPase, CDC48 subfamily protein [Pyrobaculum aerophilum str. IM2] gi|18161441|gb|AAL64724.1| AAA family ATPase, possible cell division control protein cdc48 [Pyrobaculum aerophilum str. IM2] Length = 738 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 17/116 (14%), Positives = 45/116 (38%), Gaps = 28/116 (24%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTR-- 108 P + ++L+GP G+GK+ LA ++++ + + L I + + Sbjct: 210 PPKGILLIGPPGTGKTLLAKAVANEANAYFVAINGPEIMSKYYGESEARLREIFEEAKKN 269 Query: 109 --KPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVS 150 + +++ID + QL +++ + + +++ A P + Sbjct: 270 APAIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLQERGQVIVIGATNRPDA 325 Score = 36.7 bits (84), Expect = 3.0, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 18/38 (47%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P + ++L GP G GK+ A + +S + + L Sbjct: 498 PPKGILLFGPPGVGKTLFAKAVATESGANFIAVRGPEL 535 >gi|50292351|ref|XP_448608.1| hypothetical protein [Candida glabrata CBS 138] gi|49527920|emb|CAG61571.1| unnamed protein product [Candida glabrata] Length = 436 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 23/52 (44%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + + + A + I ++ E Sbjct: 213 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIRE 264 >gi|194336865|ref|YP_002018659.1| AAA family ATPase, CDC48 subfamily [Pelodictyon phaeoclathratiforme BU-1] gi|194309342|gb|ACF44042.1| AAA family ATPase, CDC48 subfamily [Pelodictyon phaeoclathratiforme BU-1] Length = 715 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 29/204 (14%), Positives = 65/204 (31%), Gaps = 52/204 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRKP 110 P + V L GP G+GK+ + + ++ + + + +I + + Sbjct: 214 PPKGVFLYGPPGTGKTLIVRAVAQETDAYFINISGPEIMGKYYGESEARVRNIFAEAQSH 273 Query: 111 ----VLLEDIDLLDFNDT--------------QLFHIINSIHQYDSSLLMTARTFPVSWG 152 + +++ID + QL +++ + +++ A P S Sbjct: 274 APSIIFIDEIDAIAPKREDMGGEKQVEKRVVAQLLSLMDGLESRGKVIVIGATNIPNSID 333 Query: 153 VCLPDLC--SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 P L R + I PD +++ R I + + + + Sbjct: 334 ---PALRRPGRFDREISISI--PDKKGRLEIL--HIHTRGIPLSEDV----------DMS 376 Query: 211 FAEKLVDKM---DNLALSRGMGIT 231 + D AL+R +T Sbjct: 377 KIADITHGFVGADLEALAREAAMT 400 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 39/201 (19%), Positives = 69/201 (34%), Gaps = 51/201 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI----------------D 106 P + +IL G G+GK+ LA + +S S + + I Sbjct: 489 PPKGIILYGKPGTGKTYLAKALASESGVNFISVKGPQILNRFIGESEKGVRELFRLAKQS 548 Query: 107 TRKPVLLEDIDLLD-----------------------------FNDTQLFHIINSIHQYD 137 + L++ID L + N I + D Sbjct: 549 APTILFLDEIDSLAPRRRNDGVESGVIDRVISQFLTEMDGIEELKGVTVLAATNRIDRID 608 Query: 138 SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 +LL + R + + V LPDL +R + KI + E V + A++ + Sbjct: 609 PALLRSGRFD-LMFEVPLPDLSTR---EMIFKIHTKNMPLKESVSLNALAEKTDNMTGAD 664 Query: 198 AAYIVQRMERSLVFAEKLVDK 218 +I Q+ + +V +L+DK Sbjct: 665 IQFICQKAK--MVAIRELIDK 683 >gi|125974952|ref|YP_001038862.1| hypothetical protein Cthe_2467 [Clostridium thermocellum ATCC 27405] gi|125715177|gb|ABN53669.1| phage DNA replication protein (predicted replicative helicase loader) [Clostridium thermocellum ATCC 27405] Length = 278 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 19/100 (19%) Query: 67 VILVGPSGSGKSCLANIWSD----------KSRSTRFSNIAKSLDS------ILIDTRKP 110 ++L G G+GK+ A ++ + R SN +LD +D+ K Sbjct: 127 LLLWGDVGTGKTFFAACIANYLIDRGVPVLMTNFIRLSNALMALDEDRNEYIKSLDSYKL 186 Query: 111 VLLEDIDLLDFNDTQLFHIINSIHQ---YDSSLLMTARTF 147 ++++D+ +D L + N I L++T Sbjct: 187 LIIDDLGAERQSDYMLEQVYNIIDSRYKNGQPLIVTTNLP 226 >gi|320528982|ref|ZP_08030074.1| recombination factor protein RarA [Selenomonas artemidis F0399] gi|320138612|gb|EFW30502.1| recombination factor protein RarA [Selenomonas artemidis F0399] Length = 447 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 54/134 (40%), Gaps = 20/134 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKP-----------VLL 113 +I GP G GK+ LA I + ++++ FS ++ + I ++ + + Sbjct: 56 MIFWGPPGVGKTTLAQIIAARTKAEFITFSAVSGGIKDIRTVMQEAERKRSYGQRVIIFV 115 Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 ++I + F + S +L+ A T S+ + L SR V + Sbjct: 116 DEIHRFNKAQQDAFLPF---VEKGSIVLIGATTENPSFEINGA-LLSR---CRVFVLQGL 168 Query: 174 DDDFLEKVIVKMFA 187 + + K++++ A Sbjct: 169 KTEDIRKLLLRAAA 182 >gi|313895502|ref|ZP_07829058.1| replication-associated recombination protein A [Selenomonas sp. oral taxon 137 str. F0430] gi|312975628|gb|EFR41087.1| replication-associated recombination protein A [Selenomonas sp. oral taxon 137 str. F0430] Length = 444 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 54/134 (40%), Gaps = 20/134 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKP-----------VLL 113 +I GP G GK+ LA I + ++++ FS ++ + I ++ + + Sbjct: 53 MIFWGPPGVGKTTLAQIIAARTKAEFITFSAVSGGIKDIRTVMQEAERKRSYGQRVIIFV 112 Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 ++I + F + S +L+ A T S+ + L SR V + Sbjct: 113 DEIHRFNKAQQDAFLPF---VEKGSIVLIGATTENPSFEINGA-LLSR---CRVFVLQGL 165 Query: 174 DDDFLEKVIVKMFA 187 + + K++++ A Sbjct: 166 KTEDIRKLLLRAAA 179 >gi|284929519|ref|YP_003422041.1| membrane protease FtsH catalytic subunit [cyanobacterium UCYN-A] gi|284809963|gb|ADB95660.1| membrane protease FtsH catalytic subunit [cyanobacterium UCYN-A] Length = 618 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 65/201 (32%), Gaps = 46/201 (22%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ FS + + Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFEQAKSNAPCI 257 Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 V +++ID + ND QL ++ +++ A P L Sbjct: 258 VFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLTEMDGFEGNTGIIIIAATNRPDVLDAAL 317 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211 L+ V + PD +++ R + K + I +R Sbjct: 318 ------LRPGRFDRQVVVDRPDYAGRREILQVH--SRGKTLSKDVDLDKIARRTP-GFTG 368 Query: 212 AEKLVDKMDNLA-LSRGMGIT 231 A L + ++ A L+ +T Sbjct: 369 A-DLSNLLNEAAILAARRSLT 388 >gi|212716401|ref|ZP_03324529.1| hypothetical protein BIFCAT_01324 [Bifidobacterium catenulatum DSM 16992] gi|225350934|ref|ZP_03741957.1| hypothetical protein BIFPSEUDO_02509 [Bifidobacterium pseudocatenulatum DSM 20438] gi|212660654|gb|EEB21229.1| hypothetical protein BIFCAT_01324 [Bifidobacterium catenulatum DSM 16992] gi|225158390|gb|EEG71632.1| hypothetical protein BIFPSEUDO_02509 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 700 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 25/62 (40%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 R V+L GP G+GK+ LA + ++ +S + + + + D N Sbjct: 258 RGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEMFVGLGASRVRDLFDEAKKNAP 317 Query: 125 QL 126 + Sbjct: 318 AI 319 >gi|194896198|ref|XP_001978432.1| GG17681 [Drosophila erecta] gi|190650081|gb|EDV47359.1| GG17681 [Drosophila erecta] Length = 397 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + + ++ ++ I ++ E Sbjct: 174 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 225 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 226 ------MFNYARDHQ 234 >gi|156050767|ref|XP_001591345.1| hypothetical protein SS1G_07971 [Sclerotinia sclerotiorum 1980] gi|154692371|gb|EDN92109.1| hypothetical protein SS1G_07971 [Sclerotinia sclerotiorum 1980 UF-70] Length = 750 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 28/52 (53%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P+R ++L GP G+GK+ LA + +S+ST FS A SL + + Sbjct: 639 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTRFSGSDITALAKD 690 >gi|119496553|ref|XP_001265050.1| proteasome regulatory particle subunit Rpt5, putative [Neosartorya fischeri NRRL 181] gi|119413212|gb|EAW23153.1| proteasome regulatory particle subunit Rpt5, putative [Neosartorya fischeri NRRL 181] Length = 464 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 53/160 (33%), Gaps = 38/160 (23%) Query: 70 VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113 GP G+GK+ LA + ++ +T L + I ++ + Sbjct: 250 YGPPGTGKTLLARACAAETNATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPSIIFI 309 Query: 114 EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158 +++D + + ++N D ++ A L L Sbjct: 310 DELDAVGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRIKVLAATNRIDVLDPAL--L 367 Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 S RL ++ LP+++ ++ R++ +D + Sbjct: 368 RSGRLD--RKIEFPLPNEEARANILQ--IHSRKMTVDDGV 403 >gi|296163887|ref|ZP_06846541.1| IstB domain protein ATP-binding protein [Burkholderia sp. Ch1-1] gi|295885868|gb|EFG65832.1| IstB domain protein ATP-binding protein [Burkholderia sp. Ch1-1] Length = 185 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 44/108 (40%), Gaps = 23/108 (21%) Query: 67 VILVGPSGSGKSCLANIW--------SDKSRSTRFSNIAKSLDSILIDTRK---PVLLED 115 ++LVG GSGK+ LA + R ++A +L+ R L Sbjct: 18 LVLVGGPGSGKTHLATAIGVSGIMHHGKRVRFYSTVDLANALEQEKAQGRAGRIAASLLR 77 Query: 116 IDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 +DL+ ++ LFH+++ ++++ +S+ +T W Sbjct: 78 LDLVILDELGYLPFSQAGGALLFHLLSRLYEH-TSVAVTTNLDFAEWS 124 >gi|262394648|ref|YP_003286502.1| ATPase AAA family [Vibrio sp. Ex25] gi|262338242|gb|ACY52037.1| ATPase AAA family [Vibrio sp. Ex25] Length = 449 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 42/199 (21%), Positives = 66/199 (33%), Gaps = 38/199 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G+GK+ LA + ++ + + A + I E+ + T L Sbjct: 54 MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIDKAREN--KMAGRRTIL 111 Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172 F H N Q D ++ T L SR A V K++ Sbjct: 112 FVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKLTS 165 Query: 173 PDDDFLEKVIVKMF--ADRQI-----FIDKKLAAYIV------QRMERSLVFAEKLVDKM 219 + + + DR + + + RM SL + E L D Sbjct: 166 LGQSEISLALDQAINDKDRGLGNIPAHFADNVLDRLAELVNGDARM--SLNYLELLYDMA 223 Query: 220 DNLALSRGMGITRSLAAEV 238 ++ A IT L AEV Sbjct: 224 EDNA-QGEKEITLKLLAEV 241 >gi|257899569|ref|ZP_05679222.1| AAA ATPase [Enterococcus faecium Com15] gi|257837481|gb|EEV62555.1| AAA ATPase [Enterococcus faecium Com15] Length = 428 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 27/172 (15%), Positives = 66/172 (38%), Gaps = 24/172 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117 +IL GP G+GK+ +A+ + + + R N A + + +LL+++ Sbjct: 42 MILYGPPGTGKTSIASAIAGSTNYAFRMLNAATDSKKDLQVVAEEAKMSGTVILLLDEVH 101 Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 LD D L H+ + +L+ A T + P + SR + ++ + Sbjct: 102 RLDKTKQDFLLPHL-----ESGRIILIGATTENPYITIN-PAIRSR---TQIFEVKPLTE 152 Query: 176 DFLEKVIVKMFADRQIFIDKKLAAY---IVQRMERSLV-FAEKLVDKMDNLA 223 ++ + D++ + ++ + + R+ ++ ++ A Sbjct: 153 QDIQLAVEHALKDKERGLGQQAIQLDEEALLHLSRATNGDLRSALNGLELAA 204 >gi|207340961|gb|EDZ69150.1| YOR259Cp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 421 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 23/52 (44%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + + + A + I ++ E Sbjct: 214 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIRE 265 >gi|156844239|ref|XP_001645183.1| hypothetical protein Kpol_1062p33 [Vanderwaltozyma polyspora DSM 70294] gi|156115841|gb|EDO17325.1| hypothetical protein Kpol_1062p33 [Vanderwaltozyma polyspora DSM 70294] Length = 434 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 21/45 (46%) Query: 70 VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 GP G+GK+ LA + ++ +T A L + I ++ + Sbjct: 221 YGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMFIGEGAKLVRD 265 >gi|145592539|ref|YP_001154541.1| AAA family ATPase, CDC48 subfamily protein [Pyrobaculum arsenaticum DSM 13514] gi|145284307|gb|ABP51889.1| AAA family ATPase, CDC48 subfamily [Pyrobaculum arsenaticum DSM 13514] Length = 731 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 27/203 (13%), Positives = 70/203 (34%), Gaps = 37/203 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTR-- 108 P + ++L+GP G+GK+ LA ++++ + + L I + + Sbjct: 212 PPKGILLIGPPGTGKTLLAKAVANEANAYFVAINGPEIMSKYYGESEARLREIFEEAKKN 271 Query: 109 --KPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + + +++ A P + Sbjct: 272 APAIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLQERGQVVVIGATNRPDA---V 328 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 P L + + I+ PD +++ R + + + + + A+ Sbjct: 329 DPALRRPGRFDREIWINPPDFKGRYEILQ--IHTRNMPLAPDVDLRKLAEITHGFSGAD- 385 Query: 215 LVDKMDNLAL--SRGMGITRSLA 235 + + A + I L Sbjct: 386 -LAALAREAAMSALRRAIQSGLI 407 Score = 38.6 bits (89), Expect = 0.76, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 16/74 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P + ++L GP G+GK+ LA + +S + + + + Sbjct: 487 PPKGILLFGPPGTGKTLLAKAVATESGANFIAVRGPEIFSKWVGESEKMVREIFRKARMA 546 Query: 107 TRKPVLLEDIDLLD 120 V +++ID L Sbjct: 547 APAVVFIDEIDALA 560 >gi|159041123|ref|YP_001540375.1| AAA family ATPase, CDC48 subfamily protein [Caldivirga maquilingensis IC-167] gi|157919958|gb|ABW01385.1| AAA family ATPase, CDC48 subfamily [Caldivirga maquilingensis IC-167] Length = 735 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 45/116 (38%), Gaps = 28/116 (24%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106 P + V+L+GP G+GK+ LA ++++ + S + + D + Sbjct: 215 PPKGVLLIGPPGTGKTLLAKAVANEADAYFVSINGPEIVSKYYGESEARLREIFDEAKRN 274 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVS 150 + +++ID + QL +++ + + +++ A P + Sbjct: 275 APAIIFIDEIDSIAPKREEVTGEVEKRIVAQLLTLMDGLQERGQVVVIGATNRPDA 330 Score = 39.4 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 20/32 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + ++L GP G+GK+ LA +++S + + Sbjct: 491 PPKGILLFGPPGTGKTLLAKAVANESGANFIA 522 >gi|320585759|gb|EFW98438.1| aaa family ATPase rvb2 [Grosmannia clavigera kw1407] Length = 780 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 16/79 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106 ++ V+L GPSG GK+ +AN + ++++ F+ NI ++ + Sbjct: 222 SNQSVLLYGPSGCGKTLVANAIAAETKAQFFAVSGPEIIGGVSGESEGNIRNIFEAAIRM 281 Query: 107 TRKPVLLEDIDLLDFNDTQ 125 + L+DI+ + Q Sbjct: 282 APSLIFLDDIEAIAGKQEQ 300 >gi|307207117|gb|EFN84926.1| 26S protease regulatory subunit S10B [Harpegnathos saltator] Length = 393 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + + ++ ++ I ++ E Sbjct: 170 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 221 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 222 ------MFNYARDHQ 230 >gi|198427611|ref|XP_002131406.1| PREDICTED: similar to fidgetin-like 1 [Ciona intestinalis] Length = 597 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 36/179 (20%), Positives = 70/179 (39%), Gaps = 45/179 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS----------------ILID 106 P + ++L GP G+GK+ + + +S +T FS A SL S I+ Sbjct: 355 PPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWIGQGEKMVRALFAVASIN 414 Query: 107 TRKPVLLEDIDLLDFND------------TQLFHIINSIHQYDSS-------LLMTARTF 147 + +++ID L T+ F + ++ L++ A Sbjct: 415 QPAVIFIDEIDSLLSQRSDSEHESSRRIKTEFF-----VQLDGATTSSEDRILVVGATNR 469 Query: 148 PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206 P D +R + + I LP+D E++I K+ ++ + ++ +V+R E Sbjct: 470 PHEI-----DEAARRRLVKRLYIPLPEDGAREQIITKLLQEQSYRMTEEEILSVVKRTE 523 >gi|195999648|ref|XP_002109692.1| hypothetical protein TRIADDRAFT_53969 [Trichoplax adhaerens] gi|190587816|gb|EDV27858.1| hypothetical protein TRIADDRAFT_53969 [Trichoplax adhaerens] Length = 806 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 3/79 (3%) Query: 48 AIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107 A + AV + +V +L GP G GK+ LA++ + + A S+ I Sbjct: 274 ANQLAVDTQNRP---LKKVALLCGPPGLGKTTLAHVIARHAGYNVLEMNASDDRSVEIFR 330 Query: 108 RKPVLLEDIDLLDFNDTQL 126 ++ + + ++ L Sbjct: 331 QRIESATQMHSISGDEKGL 349 >gi|156547510|ref|XP_001603936.1| PREDICTED: similar to 26S proteasome regulatory complex ATPase RPT4 [Nasonia vitripennis] Length = 393 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + + ++ ++ I ++ E Sbjct: 170 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 221 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 222 ------MFNYARDHQ 230 >gi|17945503|gb|AAL48804.1| RE23388p [Drosophila melanogaster] Length = 397 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + + ++ ++ I ++ E Sbjct: 174 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 225 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 226 ------MFNYARDHQ 234 >gi|325115271|emb|CBZ50826.1| probable 26S protease regulatory subunit 6B,related [Neospora caninum Liverpool] Length = 443 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 221 PPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRE 272 >gi|315042203|ref|XP_003170478.1| hypothetical protein MGYG_07723 [Arthroderma gypseum CBS 118893] gi|311345512|gb|EFR04715.1| hypothetical protein MGYG_07723 [Arthroderma gypseum CBS 118893] Length = 814 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 65/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 252 PPRGILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 311 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + + ++M A P S Sbjct: 312 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNIVVMAATNRPNSID-- 369 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + V I +PD +++ + + + + + Sbjct: 370 -PALR-RFGRFDREVDIGIPDPTGRLEILQ--IHTKNMKLGEDV 409 >gi|296084940|emb|CBI28349.3| unnamed protein product [Vitis vinifera] Length = 377 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 46/141 (32%), Gaps = 42/141 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS----------------ILID 106 P R +L GP G+GKS LA + ++ ST FS + L S Sbjct: 106 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFQMARES 165 Query: 107 TRKPVLLEDIDLLDFND--------------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 + +++ID L L + H L++ A P + Sbjct: 166 APSIIFIDEIDSLCGQRGESNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALD 225 Query: 153 ------------VCLPDLCSR 161 + LPDL +R Sbjct: 226 QAIRRRFDKRIYIPLPDLKAR 246 >gi|308233642|ref|ZP_07664379.1| membrane protease FtsH catalytic subunit [Atopobium vaginae DSM 15829] gi|328944405|ref|ZP_08241867.1| ATP-dependent metalloprotease FtsH [Atopobium vaginae DSM 15829] gi|327490989|gb|EGF22766.1| ATP-dependent metalloprotease FtsH [Atopobium vaginae DSM 15829] Length = 717 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 68/199 (34%), Gaps = 43/199 (21%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI----------------DTR 108 R V+LVG G+GK+ LA + ++ FS + + Sbjct: 283 RGVLLVGAPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFKQAKHAAP 342 Query: 109 KPVLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGV 153 + +++ID + + L + ++ + D+ +L+ A P Sbjct: 343 SIIFIDEIDAVGRQRGAGVGGGHDEREQTLNQLLVEMDGFAESDAVILIAATNRPDILDP 402 Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L+ V++ PD + ++ ++ + D +L A + ++ Sbjct: 403 AL------LRPGRFDRRVQVDPPDIKGRKTILEVHAQNKPLAPDVRLGA--LAKLTPGFT 454 Query: 211 FAEKLVDKMDNLALSRGMG 229 A L + ++ AL Sbjct: 455 GA-DLANLLNEAALLTARR 472 >gi|300778485|ref|ZP_07088343.1| DNA polymerase III, gamma/tau subunit DnaX [Chryseobacterium gleum ATCC 35910] gi|300503995|gb|EFK35135.1| DNA polymerase III, gamma/tau subunit DnaX [Chryseobacterium gleum ATCC 35910] Length = 368 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 34/206 (16%), Positives = 64/206 (31%), Gaps = 42/206 (20%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDI-DLLD 120 ++ ++ GP G GK+ A I + K S + + +D ++DI +L+D Sbjct: 39 AQALLFCGPRGVGKTTCARILARKINEKDGSVSEDGFAYNIYELDAASNNSVDDIRELID 98 Query: 121 ---------------FNDTQLFH--IINSIHQYDSSLLMTARTFPVSWGVCL-------- 155 ++ + N+ L T P L Sbjct: 99 QVRFAPQVGKYKVYIIDEVHMLSSAAFNAF-------LKTLEEPPAHAIFILATTEKHKI 151 Query: 156 -PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 P + SR + + ++ + + I + I Q+ + Sbjct: 152 IPTILSR---CQIYDFKRIVIEDIQNHLRNIAEKENIRYEDDALYLIAQKAD---GALRD 205 Query: 215 LVDKMDNLALSRGMGITRSLAAEVLK 240 + D L+ IT + AAEVL Sbjct: 206 ALSIFDRLSTFSQRNITLAKAAEVLN 231 >gi|195475210|ref|XP_002089877.1| GE19324 [Drosophila yakuba] gi|194175978|gb|EDW89589.1| GE19324 [Drosophila yakuba] Length = 801 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 65/166 (39%), Gaps = 50/166 (30%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 234 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 293 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148 + + +++ID + QL +++ + + ++M A P Sbjct: 294 SPAIIFIDEIDAIAPKRDKTHGEVERRIVSQLLTLMDGMKKSSHLIVMAATNRPNSIDPA 353 Query: 149 --------VSWGVCLPDLCSRLKAATVVKIS-----LPDDDFLEKV 181 + +PD RL+ V++I L DD LE++ Sbjct: 354 LRRFGRFDREIDIGIPDATGRLE---VLRIHTKNMKLHDDVDLEQI 396 Score = 40.5 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 507 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKA 563 >gi|161485694|ref|NP_637341.2| recombination factor protein RarA [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|162017102|ref|YP_243284.2| recombination factor protein RarA [Xanthomonas campestris pv. campestris str. 8004] gi|188991669|ref|YP_001903679.1| recombination factor protein RarA [Xanthomonas campestris pv. campestris str. B100] gi|167733429|emb|CAP51630.1| ATPase [Xanthomonas campestris pv. campestris] Length = 456 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 40/200 (20%), Positives = 67/200 (33%), Gaps = 31/200 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD-FNDTQ 125 +IL GP G GK+ LA + + + + F I+ L + + VL E T Sbjct: 62 MILWGPPGCGKTTLALLLAHYADAE-FKAISAVLSGLPDVRQ--VLAEAAQRFASGRRTV 118 Query: 126 LF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKIS 171 LF H N Q ++L T L SR + + +S Sbjct: 119 LFVDEVHRFNKAQQDAFLPHIERGTILFVGATTENPSFELNSA---LLSRCRVHVLEGVS 175 Query: 172 LPD--DDFLEKVIVKMFADRQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 D + + A+R + + + I + + A L++ LA Sbjct: 176 PQDIVEALQRAL---HDAERGLGQETIQVSEASLLEIASAADGDVRRALTLLEIAAELAT 232 Query: 225 SRGMGITRSLAAEVLKETQQ 244 G IT +VL + + Sbjct: 233 GEGGEITPRTLLQVLADRTR 252 >gi|94498172|ref|ZP_01304734.1| transposition helper protein [Sphingomonas sp. SKA58] gi|94422452|gb|EAT07491.1| transposition helper protein [Sphingomonas sp. SKA58] Length = 223 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 58/164 (35%), Gaps = 35/164 (21%) Query: 29 FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI----- 83 F F GI + LL ++ I+S ++L G SG+GK+ Sbjct: 33 TFDFDAAPGIRKPHLL---SLAAGDDWIES-----GGNLLLFGQSGTGKTHAVAAIGHAL 84 Query: 84 --------WSDKSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFND---TQLF 127 + + + A+ S+ +D ++L+D+ + + + LF Sbjct: 85 IDTGRRVLFCSTTDMVQKLQSARRDLSLPAMLDKLDKFDLIVLDDLSYVRKDQVETSALF 144 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +I + SL +TA +W PD A TV I Sbjct: 145 ELI-AHRYERHSLAITANQPFSAWDNVFPD-----PAMTVAAID 182 >gi|26989076|ref|NP_744501.1| AFG1-family ATPase [Pseudomonas putida KT2440] gi|24983905|gb|AAN67965.1|AE016429_1 conserved hypothetical protein [Pseudomonas putida KT2440] Length = 375 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 34/110 (30%), Gaps = 23/110 (20%) Query: 65 RVVILVGPSGSGKSCL----------------------ANIWSDKSRSTRFSNIAKSLDS 102 R + L G G GKS L A + R + + Sbjct: 84 RSLYLYGSVGRGKSWLLDGFFQAVPIAAKLRLHFHDFFARLHQGMHRHRALDDALGATLD 143 Query: 103 ILIDTRKPVLLEDIDLLDFNDTQLFH-IINSIHQYDSSLLMTARTFPVSW 151 L+ + + ++ + D D L + N++ LL+T+ P Sbjct: 144 ELVGGCRVLCFDEFHVHDIGDAMLLTRLFNALFARGVYLLVTSNYAPEGL 193 >gi|68062022|ref|XP_673015.1| 26S proteasome regulatory subunit 4 [Plasmodium berghei strain ANKA] gi|56490551|emb|CAH97888.1| 26S proteasome regulatory subunit 4, putative [Plasmodium berghei] Length = 289 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 219 PPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRE 270 >gi|66357072|ref|XP_625714.1| 26S proteasome regulatory subunit S4 like AAA ATpase [Cryptosporidium parvum Iowa II] gi|67592589|ref|XP_665653.1| 26S proteasome AAA-ATPase subunit RPT2a [Cryptosporidium hominis TU502] gi|46226649|gb|EAK87628.1| 26S proteasome regulatory subunit S4 like AAA ATpase [Cryptosporidium parvum Iowa II] gi|54656441|gb|EAL35425.1| 26S proteasome AAA-ATPase subunit RPT2a [Cryptosporidium hominis] Length = 445 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 223 PPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRE 274 >gi|328354365|emb|CCA40762.1| 26S protease regulatory subunit S10B [Pichia pastoris CBS 7435] Length = 454 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + + + A ++ I ++ E Sbjct: 231 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIRE 282 >gi|325183421|emb|CCA17882.1| conserved unknown protein putative [Albugo laibachii Nc14] Length = 396 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + +T +A ++ I ++ E Sbjct: 173 PPKGVLLYGPPGTGKTLLARALACNINATFLKVVASAIVDKYIGESARIIRE 224 >gi|260589707|ref|ZP_05855620.1| replication-associated recombination protein A [Blautia hansenii DSM 20583] gi|331083138|ref|ZP_08332255.1| hypothetical protein HMPREF0992_01179 [Lachnospiraceae bacterium 6_1_63FAA] gi|260539947|gb|EEX20516.1| replication-associated recombination protein A [Blautia hansenii DSM 20583] gi|330405140|gb|EGG84677.1| hypothetical protein HMPREF0992_01179 [Lachnospiraceae bacterium 6_1_63FAA] Length = 439 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 28/188 (14%), Positives = 72/188 (38%), Gaps = 37/188 (19%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFS-----NIAKSLDSILIDTRKPVLLEDIDLL 119 VI GP G+GK+ LA + ++ + + K ++ ++ + ++ + + Sbjct: 53 GSVIFYGPPGTGKTTLAKVIANTTSARFKQINATVAGKKDMEEVVKEAQQHL------GM 106 Query: 120 DFNDTQLF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 T LF H N + + +L+ A T + V L SR + V Sbjct: 107 YGKKTILFVDEIHRFNKGQQDYLLPFVEDGTLILIGATTENPYFEVNSA-LLSR---SIV 162 Query: 168 VKISLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 ++ + + + K++ + +D R + + + +++ + + A ++ ++ Sbjct: 163 FELKPLEKEDICKILERAVSDCERGMGSYHAVLHEDAKSFLA---DIAGGDARAALNALE 219 Query: 221 NLALSRGM 228 L+ Sbjct: 220 LGILTTQK 227 >gi|239832095|ref|ZP_04680424.1| recombination factor protein RarA [Ochrobactrum intermedium LMG 3301] gi|239824362|gb|EEQ95930.1| recombination factor protein RarA [Ochrobactrum intermedium LMG 3301] Length = 438 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 63/182 (34%), Gaps = 28/182 (15%) Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDID 117 S +I GP G+GK+ +A + + ++ + S I + + Sbjct: 49 ASGSLGSMIFWGPPGTGKTTVARLLAGETDLAFEQISAIFSGVADLKKVFEAA----RAR 104 Query: 118 LLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLK 163 + T LF H N + + +L+ T L SR Sbjct: 105 RMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVILIGATTENPSFELNAA---LLSR-- 159 Query: 164 AATVVKISLPDDDFLEKVIVKM--FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 A V+ D + + ++ + +R + +D++ A +++ + A L +++ Sbjct: 160 -ARVLTFHPHDGESIATLLTRAEEQEERPLPLDEEARASLIRMADGDGRAALTLGEEVWR 218 Query: 222 LA 223 A Sbjct: 219 AA 220 >gi|150399700|ref|YP_001323467.1| proteasome-activating nucleotidase [Methanococcus vannielii SB] gi|166199294|sp|A6UQT3|PAN_METVS RecName: Full=Proteasome-activating nucleotidase; Short=PAN; AltName: Full=Proteasomal ATPase; AltName: Full=Proteasome regulatory ATPase; AltName: Full=Proteasome regulatory particle gi|150012403|gb|ABR54855.1| 26S proteasome subunit P45 family [Methanococcus vannielii SB] Length = 407 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + ++ ++ + L I ++ + Sbjct: 181 PPKGVLLYGPPGTGKTLLAKAVARETNASFVRVVGSELVKKFIGEGAKLVRD 232 >gi|119872171|ref|YP_930178.1| replication factor C large subunit [Pyrobaculum islandicum DSM 4184] gi|150415668|sp|A1RSA3|RFCL_PYRIL RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|119673579|gb|ABL87835.1| replication factor C large subunit [Pyrobaculum islandicum DSM 4184] Length = 423 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 71/187 (37%), Gaps = 32/187 (17%) Query: 64 SRVVILVGPSGSGKSCLANIWSD--------------KSRSTRFSNIAKSLDSILIDTRK 109 ++ V+L GP G GK+ + + + ++ + + L + + Sbjct: 56 AKAVLLAGPPGIGKTTIVHALAREIKYELIELNASDVRTGERIKQVVGRGLREASLFGYE 115 Query: 110 --PVLLEDIDLLDFNDT--QLFHIINSIHQYDSSLLMTARTF--PVSWGVCLPDLCSRLK 163 VL +++D L + L I+ I ++MTA P L D+ Sbjct: 116 GKLVLFDEVDGLHVKEDLGGLETIVEIIEIAKVPVIMTANNPYDPKFRP--LRDI----- 168 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 A V+ + +D + +V+ ++ A+ +++ I + SL ++ + + Sbjct: 169 -ALVINLKRLSEDDVVEVLRRICANEGAKCEEEALRSIAKS---SLGDLRAAINDL-QMY 223 Query: 224 LSRGMGI 230 LS G I Sbjct: 224 LSSGKKI 230 >gi|92116397|ref|YP_576126.1| IstB-like ATP-binding protein [Nitrobacter hamburgensis X14] gi|91799291|gb|ABE61666.1| IstB-like ATP-binding protein [Nitrobacter hamburgensis X14] Length = 287 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 46/110 (41%), Gaps = 22/110 (20%) Query: 64 SRVVILVGPSGSGKSCLANIWS-------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 R +LVG +G+GK+ LA + + R ++ L+ + R+ + E + Sbjct: 98 QRNAVLVGGTGTGKTHLAIAIARSCIRSGARGRFYNVVDLVNRLEIETRNGRQGRIAEHL 157 Query: 117 ---DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 D + ++ LFH+++ +++ +S+++T W Sbjct: 158 TRMDFIVLDELGYLPFAQSGGQLLFHLVSRLYER-TSIVVTTNLAFGEWP 206 >gi|55380068|ref|YP_137918.1| proteasome-activating nucleotidase [Haloarcula marismortui ATCC 43049] gi|55232793|gb|AAV48212.1| proteasome-activating nucleotidase 2 [Haloarcula marismortui ATCC 43049] Length = 404 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 28/64 (43%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P V+L GP G+GK+ LA ++++ +T L I ++ + +L Sbjct: 181 PPSGVLLHGPPGTGKTMLAKAVANETDATFIKMAGSELVHKFIGEGAKLVRDLFELARQE 240 Query: 123 DTQL 126 + + Sbjct: 241 EPAV 244 >gi|84998232|ref|XP_953837.1| transitional endoplasmic reticulum ATPase (CDC48 ) [Theileria annulata] gi|65304834|emb|CAI73159.1| transitional endoplasmic reticulum ATPase (CDC48 homologue), putative [Theileria annulata] Length = 822 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 62/173 (35%), Gaps = 44/173 (25%) Query: 63 PSRVVILVGPSG---------SGKSCLANIWSDKSRSTRF----------------SNIA 97 P R V+L GP G SGK+ +A ++++ + F SN+ Sbjct: 252 PPRGVLLYGPPGTILSFLYYRSGKTLIARAVANETGAFFFLINGPEVMSKMAGEAESNLR 311 Query: 98 KSLDSILIDTRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTAR 145 ++ + + +++ID + QL +++ + +++ A Sbjct: 312 RAFAEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGLKGRGQVVVIAAT 371 Query: 146 TFPVSWGVCLPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PDD +++ R + +D ++ Sbjct: 372 ---NRQNSIDPALR-RFGRFDKEIDIGVPDDQGRLEIL--KIHTRNMKLDPQV 418 Score = 39.7 bits (92), Expect = 0.38, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 24/57 (42%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA + + + S L ++ + + E D Sbjct: 534 PSRGVLFYGPPGCGKTLLAKAVASECSANFISVKGPELLTMWFGESEANVREVFDKA 590 >gi|298207712|ref|YP_003715891.1| putative ATPase, AAA family protein [Croceibacter atlanticus HTCC2559] gi|83850349|gb|EAP88217.1| putative ATPase, AAA family protein [Croceibacter atlanticus HTCC2559] Length = 425 Score = 41.3 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 39/202 (19%), Positives = 70/202 (34%), Gaps = 35/202 (17%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS---------------TRFSNIAKSLDSILIDTRK 109 +I GP G GK+ LANI +++S AK D + Sbjct: 40 PSLIFWGPPGVGKTTLANIIANESDRPFYSLSAINSGVKDVREVIEKAKKSDGLFSSKNP 99 Query: 110 PVLLEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168 + +++I + L + L+ A T S+ V +P L SR V Sbjct: 100 LLFIDEIHRFSKSQQDSLL----GAVEKGWVTLIGATTENPSFEV-IPALLSR---CQVY 151 Query: 169 KISLPDDDFLEKVIVKM------FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 + + L ++I K + + I + + +++ + + + N Sbjct: 152 VLKPFSKEDLLQLINKAIIEDPYISKKNIELKE--TEALLRLSGGDARKLLNIFELLVNT 209 Query: 223 ALSRGMGITRSLAAEVLKETQQ 244 + S + IT VLK QQ Sbjct: 210 SASEKVVITNDF---VLKNVQQ 228 >gi|317153252|ref|YP_004121300.1| MgsA AAA+ ATPase-like protein [Desulfovibrio aespoeensis Aspo-2] gi|316943503|gb|ADU62554.1| MgsA AAA+ ATPase-like protein [Desulfovibrio aespoeensis Aspo-2] Length = 407 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 8/102 (7%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSIL--IDTRKPVLLEDIDLLD 120 ++L GP G GKS LA + + + S R S L ++ + ++L+++ Sbjct: 43 PSLLLFGPPGCGKSTLAMLLARLTGKKSLRLSAPEAGLTALRKQLPGHDILILDELHRFS 102 Query: 121 FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 F I + L+ T S+ V L SRL Sbjct: 103 KAQQDFFLPI---LESGEITLLATTTENPSFSVTRQ-LLSRL 140 >gi|261420426|ref|YP_003254108.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y412MC61] gi|319768093|ref|YP_004133594.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y412MC52] gi|261376883|gb|ACX79626.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y412MC61] gi|317112959|gb|ADU95451.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y412MC52] Length = 251 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 24/125 (19%) Query: 67 VILVGPSGSGKSCLANI----WSDKSRSTRFSNIAKSLDSILIDTRKPVL------LEDI 116 V+L+G G+GK+ LA + RF +A + + + L ++ Sbjct: 96 VLLLGSPGTGKTHLATALGIQACQQGHEVRFFRVADLVAQLEEALKNGTLGRLKRSIDAC 155 Query: 117 DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 +LL ++ LFHII ++ S+++T+ W D +RL AA Sbjct: 156 ELLILDELGYVPFQKQGSELLFHIIADCYER-KSVMVTSNLEFGQWDRVFGD--NRLTAA 212 Query: 166 TVVKI 170 V ++ Sbjct: 213 LVDRL 217 >gi|311748366|ref|ZP_07722151.1| ATPase, AAA family [Algoriphagus sp. PR1] gi|126576875|gb|EAZ81123.1| ATPase, AAA family [Algoriphagus sp. PR1] Length = 420 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 29/167 (17%), Positives = 70/167 (41%), Gaps = 21/167 (12%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS---------TRFSNIAKSLDSILIDTRKPVLLED 115 +IL GP G GK+ +ANI +++ ++ + +I + ++ + +++ Sbjct: 41 PSLILWGPPGVGKTTIANIIANEIKAPFYTLSAISSGVKDIREVIEKAKFQMGVVLFIDE 100 Query: 116 IDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 I + + L + L+ A T S+ V L SR + T+ + P+ Sbjct: 101 IHRFNKSQQDALL----GAVEKGIIRLIGATTENPSFEVNAA-LLSRCQVFTLNSLGKPE 155 Query: 175 -DDFLEKVIVKMFADRQIFIDKKLAAYIVQRME----RSLVFAEKLV 216 + + + + K +++ ++ K ++ R+ R L+ ++V Sbjct: 156 LEAMVHQALEKDVDLKKLNVELKETDALL-RISGGDGRKLLNLLEIV 201 >gi|150399940|ref|YP_001323707.1| ATPase central domain-containing protein [Methanococcus vannielii SB] gi|150012643|gb|ABR55095.1| AAA ATPase central domain protein [Methanococcus vannielii SB] Length = 371 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 23/156 (14%), Positives = 51/156 (32%), Gaps = 34/156 (21%) Query: 61 SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSIL 104 W + ++ GP G+GK+ LA + ++ + A L + L Sbjct: 153 EWAPKNILFYGPPGTGKTLLARALATETDVPLYLIKATELIGDHVGDGSKQIQSLYEEAL 212 Query: 105 IDTRKPVLLEDIDLLDFNDT-------------QLFHIINSIHQYDSSLLMTARTFPVSW 151 + + ++++D + + L ++ I + + + A P Sbjct: 213 ENAPCIIFIDELDAIALSRQFQSLRGDVSEVVNALLTELDGIKSNEGIVTIAATNNPEML 272 Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 + SR + K+ PDD K++ Sbjct: 273 DSAI---RSRFEEEIEFKM--PDDSERLKIMELYAE 303 >gi|44355275|gb|AAS47025.1| proteasome 26S ATPase subunit 1 [Oreochromis mossambicus] Length = 256 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 57 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 108 >gi|194858161|ref|XP_001969115.1| TER94 [Drosophila erecta] gi|27374245|gb|AAO01004.1| CG2331-PA [Drosophila erecta] gi|190660982|gb|EDV58174.1| TER94 [Drosophila erecta] Length = 801 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 65/166 (39%), Gaps = 50/166 (30%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 234 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 293 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148 + + +++ID + QL +++ + + ++M A P Sbjct: 294 SPAIIFIDEIDAIAPKRDKTHGEVERRIVSQLLTLMDGMKKSSHLIVMAATNRPNSIDPA 353 Query: 149 --------VSWGVCLPDLCSRLKAATVVKIS-----LPDDDFLEKV 181 + +PD RL+ V++I L DD LE++ Sbjct: 354 LRRFGRFDREIDIGIPDATGRLE---VLRIHTKNMKLHDDVDLEQI 396 Score = 40.5 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 507 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKA 563 >gi|15611466|ref|NP_223117.1| recombination factor protein RarA [Helicobacter pylori J99] gi|4154931|gb|AAD05978.1| putative [Helicobacter pylori J99] Length = 391 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 63/179 (35%), Gaps = 21/179 (11%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI----------DTRKPVLLE 114 GP G GK+ LA I + + S A + + V ++ Sbjct: 38 PHAFFYGPPGVGKTSLAQIIARSLKRPILSFNATDFKLEDLRLKLKNYQNTLLKPVVFID 97 Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 + L+ + I + + +L++ A T ++ + + SR + +++ Sbjct: 98 ETHRLNKTQQEFLLPI---MEKNRALILGASTQDPNYSLSHA-IRSR---SFTFELTPLK 150 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRS 233 L+++ K + I+ Y++ S A L++ +D L+ IT Sbjct: 151 KSDLDRLCDKALTLLKKQIEPGAKTYLLNN---SAGDARALLNLLD-LSAKIENPITLK 205 >gi|20094314|ref|NP_614161.1| proteasome-activating nucleotidase [Methanopyrus kandleri AV19] gi|22096006|sp|Q8TX03|PAN_METKA RecName: Full=Proteasome-activating nucleotidase; Short=PAN; AltName: Full=Proteasomal ATPase; AltName: Full=Proteasome regulatory ATPase; AltName: Full=Proteasome regulatory particle gi|19887363|gb|AAM02091.1| ATP-dependent 26S proteasome regulatory subunit [Methanopyrus kandleri AV19] Length = 436 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA ++ + +T A L I ++ E Sbjct: 212 PPKGVLLYGPPGTGKTLLAKAVANHADATFIRLAAPELVQKFIGEGARLVRE 263 >gi|332289880|ref|YP_004420732.1| Type II/IV secretion system protein [Gallibacterium anatis UMN179] gi|330432776|gb|AEC17835.1| Type II/IV secretion system protein [Gallibacterium anatis UMN179] Length = 469 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 38/205 (18%), Positives = 65/205 (31%), Gaps = 43/205 (20%) Query: 14 DKQKNDQPKNKEEQLFFSF-PRCLGISRDDLLV-HSAIEQAVRLIDSWPSWPSRVVILVG 71 D + + P E++ P DD EQAV L S P ++++ G Sbjct: 211 DIRLSSLPTQYGEKIVLRLQPNTPVF--DDFTELGMTNEQAV-LFRQALSQPQGLILVTG 267 Query: 72 PSGSGKS-------CLAN-------------------IWSDKSRSTRFSNIAKSLDSILI 105 P+GSGKS N I ++ + A L S L Sbjct: 268 PTGSGKSLTLYSGLHFLNQESRHILTAEDPIELQLNGIIQTQANAAIGLTFATLLRSFLR 327 Query: 106 DTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 +++ +I + + L Q +L T T + SRL+ Sbjct: 328 QDPDVIMVGEIRDQETAEIAL-----RAAQTGHLVLSTLHTNTAIGAI------SRLQQL 376 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQ 190 + + ++ L V ++ R Sbjct: 377 GIAQ-HELENSLLLVVAQRLVRKRC 400 >gi|225022112|ref|ZP_03711304.1| hypothetical protein CORMATOL_02145 [Corynebacterium matruchotii ATCC 33806] gi|224945045|gb|EEG26254.1| hypothetical protein CORMATOL_02145 [Corynebacterium matruchotii ATCC 33806] Length = 977 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 34/206 (16%), Positives = 64/206 (31%), Gaps = 49/206 (23%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110 R V+L GP G+GK+ LA + ++ +S + + Sbjct: 201 RGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFKQARENSP 260 Query: 111 --VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGV 153 + +++ID + + L + ++ + +LM A P Sbjct: 261 CIIFVDEIDAVGRQRGSGMGGGHDEREQTLNQLLVEMDGFGDREGVILMAATNRPDILDQ 320 Query: 154 CL--------------PDLCSRLKAATVVKISLP--DDDFLEKVIVKMFADRQIFIDKKL 197 L PDL R V P D L + + + L Sbjct: 321 ALLRPGRFDRQIPVTNPDLKGREAILKVHAEGKPFAKDVDLAALARRTAGMSGADLANVL 380 Query: 198 --AAYIVQRMERSLVFAEKLVDKMDN 221 AA + R+ +++ A+ L + D Sbjct: 381 NEAALLTARIGGNVITADALEEATDR 406 >gi|224015872|ref|XP_002297581.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220967748|gb|EED86130.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 500 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 68/191 (35%), Gaps = 36/191 (18%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSR------------STRFSNIAKSLDSILIDTR---- 108 R ++L GP G+GK+ LA + ++ AK + + + Sbjct: 52 RGLLLTGPPGTGKTLLAKAIAGEAGVPFFFSSGSQFEEVYVGLGAKRIRELFEAAKQKSP 111 Query: 109 KPVLLEDIDLLDF-----NDTQLFHIINSIH-------QYDSSLLMTARTFPVSWGVCLP 156 + +++ID + + + L +N + + + +++ A F S L Sbjct: 112 SIIFIDEIDAVGGTRKLKDQSALKMTLNELLVQMDGFDENNGIIVIGATNFAESLDSAL- 170 Query: 157 DLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215 L R + VV + PD ++++ A + + I+ R A L Sbjct: 171 -LRPGRFDKSVVVPL--PDVGGRKEILEMYAAK--TKVSDDVDLGILARGTTGFSGA-DL 224 Query: 216 VDKMDNLALSR 226 + M+ AL Sbjct: 225 YNLMNQAALKA 235 >gi|209875885|ref|XP_002139385.1| ATPase, AFG1 family protein [Cryptosporidium muris RN66] gi|209554991|gb|EEA05036.1| ATPase, AFG1 family protein [Cryptosporidium muris RN66] Length = 473 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 16/110 (14%), Positives = 41/110 (37%), Gaps = 25/110 (22%) Query: 67 VILVGPSGSGKSCLANIWSD-----KSRSTRFSNIAKSLDSILIDTRKPVLLEDI----- 116 + + G G GK+ L +++ + + + F K ++ + R+ + + I Sbjct: 83 LYIYGEPGLGKTMLMDLFYETIDTTRKKRIHFHEFIKDINDQIYHARQRMCTDSITFVAN 142 Query: 117 ------DLLDFNDTQLFH---------IINSIHQYDSSLLMTARTFPVSW 151 D++ ++ Q+ H + N + ++MT+ P Sbjct: 143 EIKKTTDIICIDEFQIIHITDAMIIKRLFNILFDLGIVVIMTSNRPPNDL 192 >gi|195398707|ref|XP_002057962.1| GJ15827 [Drosophila virilis] gi|194150386|gb|EDW66070.1| GJ15827 [Drosophila virilis] Length = 397 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + + ++ ++ I ++ E Sbjct: 174 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 225 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 226 ------MFNYARDHQ 234 >gi|114800296|ref|YP_761330.1| recombination factor protein RarA [Hyphomonas neptunium ATCC 15444] gi|114740470|gb|ABI78595.1| ATPase, AAA family [Hyphomonas neptunium ATCC 15444] Length = 436 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 57/170 (33%), Gaps = 28/170 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ +A + + ++ S I + + K + T Sbjct: 55 MILWGPPGVGKTTIARLLAQETDLEFEALSAIFSGVKDLRAAFEKA----EARRRVGKGT 110 Query: 125 QLF----HIINSIHQYD---------SSLLMTARTFPV-SWGVCLPDLCSRLKAATVVKI 170 LF H N Q +L+ P L SR V+ + Sbjct: 111 LLFVDEIHRFNRSQQDGFLPFVESGTVTLVGATTENPSFELNGA---LLSR---CQVMVL 164 Query: 171 SLPDDDFLEKVIVK--MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218 +DD L +++ + R++ +++ + + LV++ Sbjct: 165 RRLEDDDLRELMARAERAMGRRLPAMPDAREALIRMADGDGRYLLNLVEQ 214 >gi|6434958|gb|AAF08391.1|AF145310_1 26S proteasome regulatory complex subunit p42D [Drosophila melanogaster] Length = 390 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + + ++ ++ I ++ E Sbjct: 167 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 218 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 219 ------MFNYARDHQ 227 >gi|112983322|ref|NP_001037003.1| transitional endoplasmic reticulum ATPase TER94 [Bombyx mori] gi|83423461|dbj|BAE54254.1| transitional endoplasmic reticulum ATPase TER94 [Bombyx mori] gi|95102992|gb|ABF51437.1| transitional endoplasmic reticulum ATPase TER94 [Bombyx mori] Length = 805 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 33/203 (16%), Positives = 75/203 (36%), Gaps = 56/203 (27%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 235 PPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKN 294 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP------ 148 + + ++++D + QL +++ + + ++M A P Sbjct: 295 SPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNSIDPA 354 Query: 149 --------VSWGVCLPDLCSRLKAATVVKISLP---DDDFLEKVIVKMFADRQIFIDKKL 197 + +PD RL+ + DD LE++ A+ + L Sbjct: 355 LRRFGRFDREIDIGIPDATGRLE-ILRIHTKNMKLGDDVDLEQI----AAESHGHVGADL 409 Query: 198 AAYIVQRMERSLVFAEKLVDKMD 220 A+ S +++ +KMD Sbjct: 410 ASLC------SEAALQQIREKMD 426 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 508 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKA 564 >gi|34483337|emb|CAE10335.1| conserved hypothetical protein [Wolinella succinogenes] Length = 365 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 28/197 (14%), Positives = 73/197 (37%), Gaps = 29/197 (14%) Query: 55 LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSIL-------- 104 +I+ GP G+GK+ A I + + F+ ++ + Sbjct: 1 MIEH---GSLPHAFFYGPPGTGKTSAAKIIAKRLDRPFALFNATTFKIEELRSYLKEYKN 57 Query: 105 IDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164 + + ++++ L N ++ + + ++++ A T + + + SR Sbjct: 58 ALLKPLLFIDEVHRLSKNQQEVLLP---LMENHEAIIIGASTENPYFAMTGA-IRSR--- 110 Query: 165 ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD-NLA 223 + + + LE ++ ++ + I +D Y+++ E A +++ +D + Sbjct: 111 SMLFEFKPLGKKELEILLERVCENHSILLDNSARDYLLRSSE---GDARAMLNLLDCAYS 167 Query: 224 LSRGMGITRSLAAEVLK 240 L L+ E LK Sbjct: 168 LGES-----PLSLETLK 179 >gi|325661833|ref|ZP_08150454.1| hypothetical protein HMPREF0490_01190 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471811|gb|EGC75028.1| hypothetical protein HMPREF0490_01190 [Lachnospiraceae bacterium 4_1_37FAA] Length = 1021 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 19/69 (27%) Query: 30 FSF-PRCLGISRDD-----LLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI 83 F F P + ++ +V+ + + + +++ G SG+GKS L Sbjct: 30 FEFVPTSEKYTSEEDIYKKFIVNPSNK-------------HQFIVVYGQSGTGKSHLIRW 76 Query: 84 WSDKSRSTR 92 + + ++ R Sbjct: 77 FEARYKADR 85 >gi|309789629|ref|ZP_07684210.1| AAA ATPase central domain protein [Oscillochloris trichoides DG6] gi|308228365|gb|EFO82012.1| AAA ATPase central domain protein [Oscillochloris trichoides DG6] Length = 462 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 38/200 (19%), Positives = 64/200 (32%), Gaps = 40/200 (20%) Query: 55 LIDS--WPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 ++D + +R + L GP G+GK+ +A ++ A +D +I + Sbjct: 168 MLDKIGPAANSARSLFLYGPPGNGKTTIAEGIANLLGGYILIPYAVEIDGQIIK-----I 222 Query: 113 LEDIDLLDFNDTQLFHIINSIHQY--DSSLLMTARTFP-VSW------------GVCLPD 157 + ++ Q+ H N + + T TFP W + L Sbjct: 223 FDPLNHQVVQQNQVGH--NEVAAAFPGAPARPTGSTFPDARWLVCKRPQVVVGGELILEQ 280 Query: 158 LCSRLKAATVVKISLPDDDFLEK---VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 L L VVKI ++ F ++ L +IV Sbjct: 281 LE--LIFDPVVKIYEAPFQLKANGGLFLIDDFGRQKCSPKDLLNRWIVP----------- 327 Query: 215 LVDKMDNLALSRGMGITRSL 234 L K D LAL G + Sbjct: 328 LEKKFDYLALQTGKKLQVPF 347 >gi|268680460|ref|YP_003304891.1| ATPase AAA [Sulfurospirillum deleyianum DSM 6946] gi|268618491|gb|ACZ12856.1| AAA ATPase central domain protein [Sulfurospirillum deleyianum DSM 6946] Length = 806 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 10/69 (14%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKS--------RSTRFSNIAKSLDSILIDTRKP--VL 112 P + +IL GP+G GK LA ++ ++ + F + P V+ Sbjct: 405 PPKGMILYGPAGMGKKLLARAFAHEADMPYIVLRDADLFDGAKIRKAYAQAYSSAPAIVI 464 Query: 113 LEDIDLLDF 121 LEDID+ Sbjct: 465 LEDIDVQGI 473 >gi|291457316|ref|ZP_06596706.1| ATP-dependent metalloprotease FtsH [Bifidobacterium breve DSM 20213] gi|291381151|gb|EFE88669.1| ATP-dependent metalloprotease FtsH [Bifidobacterium breve DSM 20213] Length = 698 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 25/62 (40%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 R V+L GP G+GK+ LA + ++ +S + + + + D N Sbjct: 252 RGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEMFVGLGASRVRDLFDEAKKNAP 311 Query: 125 QL 126 + Sbjct: 312 AI 313 >gi|221195854|ref|ZP_03568907.1| Cell division protease FtsH homolog [Atopobium rimae ATCC 49626] gi|221184328|gb|EEE16722.1| Cell division protease FtsH homolog [Atopobium rimae ATCC 49626] Length = 631 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 22/141 (15%), Positives = 45/141 (31%), Gaps = 44/141 (31%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110 R +LVGP G+GK+ +A + ++ F + + Sbjct: 207 RGALLVGPPGTGKTLIAKAVAGEAGVPFFQIAGSEFVEMFVGRGAAKVRDLFKQANEKAP 266 Query: 111 --VLLEDIDLLDF---------ND-----TQLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + +++ID + ++ QL ++ + +++ A P + Sbjct: 267 CIIFIDEIDAVGKRRDAPLNTNDEREQTLNQLLSEMDGFDNHKGIVVLAATNRPETLDQA 326 Query: 152 -----------GVCLPDLCSR 161 V LPDL R Sbjct: 327 LLRPGRFDRRIPVELPDLAGR 347 >gi|242767242|ref|XP_002341331.1| AAA family ATPase/60S ribosome export protein Rix7, putative [Talaromyces stipitatus ATCC 10500] gi|218724527|gb|EED23944.1| AAA family ATPase/60S ribosome export protein Rix7, putative [Talaromyces stipitatus ATCC 10500] Length = 740 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P R V+L GP G GK+ LAN ++ S A S+ S + + L E D Sbjct: 207 PPRGVLLHGPPGCGKTMLANAFAADLGVPFISISAPSVVSGMSGESEKALREHFDEA 263 Score = 40.5 bits (94), Expect = 0.24, Method: Composition-based stats. Identities = 12/28 (42%), Positives = 18/28 (64%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS 94 V+L GP G GK+ LA +++SR+ S Sbjct: 517 VLLWGPPGCGKTLLAKAVANESRANFIS 544 >gi|171741153|ref|ZP_02916960.1| hypothetical protein BIFDEN_00220 [Bifidobacterium dentium ATCC 27678] gi|283455478|ref|YP_003360042.1| cell division protein [Bifidobacterium dentium Bd1] gi|306823451|ref|ZP_07456826.1| ATP-dependent metalloprotease FtsH [Bifidobacterium dentium ATCC 27679] gi|309802710|ref|ZP_07696814.1| ATP-dependent metallopeptidase HflB [Bifidobacterium dentium JCVIHMP022] gi|171276767|gb|EDT44428.1| hypothetical protein BIFDEN_00220 [Bifidobacterium dentium ATCC 27678] gi|283102112|gb|ADB09218.1| ftsH Cell division protein [Bifidobacterium dentium Bd1] gi|304553158|gb|EFM41070.1| ATP-dependent metalloprotease FtsH [Bifidobacterium dentium ATCC 27679] gi|308220774|gb|EFO77082.1| ATP-dependent metallopeptidase HflB [Bifidobacterium dentium JCVIHMP022] Length = 688 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 25/62 (40%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 R V+L GP G+GK+ LA + ++ +S + + + + D N Sbjct: 246 RGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEMFVGLGASRVRDLFDEAKKNAP 305 Query: 125 QL 126 + Sbjct: 306 AI 307 >gi|170720977|ref|YP_001748665.1| AFG1 family ATPase [Pseudomonas putida W619] gi|169758980|gb|ACA72296.1| AFG1-family ATPase [Pseudomonas putida W619] Length = 361 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 37/125 (29%), Gaps = 24/125 (19%) Query: 50 EQAVRLIDSWPSWPSRVVILVGPSGSGKSCL----------------------ANIWSDK 87 A +L P R + L G G GKS L A + Sbjct: 51 AMAEQLA-RLPGGEPRSLYLYGSVGRGKSWLLDGFFQAVPIEAKKRLHFHDFFARLHQGM 109 Query: 88 SRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFH-IINSIHQYDSSLLMTART 146 + + L+ + + ++ + D D L + N++ LL+T+ Sbjct: 110 HCHRLLDDALGATLDALLGDCQVLCFDEFHVHDIGDAMLLTRLFNALFARGIFLLVTSNY 169 Query: 147 FPVSW 151 P Sbjct: 170 APEGL 174 >gi|50553670|ref|XP_504246.1| YALI0E21868p [Yarrowia lipolytica] gi|49650115|emb|CAG79841.1| YALI0E21868p [Yarrowia lipolytica] Length = 410 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 26/159 (16%), Positives = 56/159 (35%), Gaps = 40/159 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID--------------TR 108 P + V+L GP G+GK+ LA + + + A ++ I Sbjct: 187 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFGYAKEH 246 Query: 109 KPVLL--EDIDLLDFN------------DTQLFHIINSIHQ---YDSSLLMTARTFPVSW 151 +P ++ +++D + L ++N + + ++ A P + Sbjct: 247 EPCIIFMDEVDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDYLGKTKVIMATNRPDTL 306 Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFA 187 L L+A + ++I LP++ +V A Sbjct: 307 DPAL------LRAGRLDRKIEIPLPNEAGRLEVFKIHAA 339 >gi|328853328|gb|EGG02467.1| hypothetical protein MELLADRAFT_38533 [Melampsora larici-populina 98AG31] Length = 701 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 10/55 (18%) Query: 63 PSRVVILVGPSGSGKSC-LANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 P+ + ++ GP G+GK+ L +I S + D ILI + +++I Sbjct: 233 PAPITLVFGPPGTGKTHTLVSI---------ISALHARGDRILIAAASNLAIDNI 278 >gi|156139599|gb|ABU51104.1| unknown [uncultured bacterium Bio7] Length = 262 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 46/110 (41%), Gaps = 22/110 (20%) Query: 64 SRVVILVGPSGSGKSCLANIWS-------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 R +LVG +G+GK+ LA + + R ++ L+ + R+ + E + Sbjct: 73 QRNAVLVGGTGTGKTHLAIAIARSCIRSGARGRFYNVVDLVNRLEIETRNGRQGRIAEHL 132 Query: 117 ---DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 D + ++ LFH+++ +++ +S+++T W Sbjct: 133 TRMDFIVLDELGYLPFAQSGGQLLFHLVSRLYER-TSIVVTTNLAFGEWP 181 >gi|170087590|ref|XP_001875018.1| predicted protein [Laccaria bicolor S238N-H82] gi|164650218|gb|EDR14459.1| predicted protein [Laccaria bicolor S238N-H82] Length = 817 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 65/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 241 PPRGILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 300 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + + ++M A P S Sbjct: 301 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGLKARSNVVVMAATNRPNSID-- 358 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + V I +PD +++ + + + + + Sbjct: 359 -PALR-RFGRFDREVDIGIPDPTGRLEIL--RIHTKNMKLAEDV 398 Score = 38.2 bits (88), Expect = 0.91, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G+GK+ LA +++ + S L ++ + + + D Sbjct: 514 PSKGVLFYGPPGTGKTLLAKAIANECNANFISIKGPELLTMWFGESEANVRDVFDKA 570 >gi|159897963|ref|YP_001544210.1| ATPase central domain-containing protein [Herpetosiphon aurantiacus ATCC 23779] gi|159891002|gb|ABX04082.1| AAA ATPase central domain protein [Herpetosiphon aurantiacus ATCC 23779] Length = 416 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 46/135 (34%), Gaps = 35/135 (25%) Query: 61 SWPSRVVILVGPSGSGKSC----LANI------WSDKSRSTRFSNIAKSLDSILIDTRKP 110 +W R +ILVGP G+GK+ L N + + +N A R Sbjct: 198 AW-KRGIILVGPPGNGKTHMIKGLLNALDYPCLYVKSFDAQYSTNNANIRAVFDRARRSA 256 Query: 111 ---VLLEDIDLLDFNDTQLFHI-----INSIHQYDSSLLMTARTF----PVSWG------ 152 V+LED+D L + + F + N+ LL T P Sbjct: 257 PCIVVLEDLDSLINDTNRAFFLNEVDGFNA--NQGVVLLATTNHPEDIDPAIMNRPSRFD 314 Query: 153 ----VCLPDLCSRLK 163 LP+L RL Sbjct: 315 RKYYFSLPELAERLA 329 >gi|119195029|ref|XP_001248118.1| hypothetical protein CIMG_01889 [Coccidioides immitis RS] gi|303310771|ref|XP_003065397.1| Vacuolar protein sorting-associated protein VPS4 , putative [Coccidioides posadasii C735 delta SOWgp] gi|240105059|gb|EER23252.1| Vacuolar protein sorting-associated protein VPS4 , putative [Coccidioides posadasii C735 delta SOWgp] gi|320034730|gb|EFW16673.1| vacuolar protein sorting factor [Coccidioides posadasii str. Silveira] Length = 433 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 14/80 (17%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + ++L GP G+GKS LA + ++ ST FS + L S + + ++ Sbjct: 163 PWKGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESERLV---------- 212 Query: 123 DTQLFHIINSIHQYDSSLLM 142 QLF N + +++ Sbjct: 213 -KQLF---NMARENKPAIIF 228 >gi|85715553|ref|ZP_01046534.1| putative transposase [Nitrobacter sp. Nb-311A] gi|85717738|ref|ZP_01048669.1| putative transposase [Nitrobacter sp. Nb-311A] gi|85695444|gb|EAQ33371.1| putative transposase [Nitrobacter sp. Nb-311A] gi|85697748|gb|EAQ35624.1| putative transposase [Nitrobacter sp. Nb-311A] Length = 270 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 22/110 (20%) Query: 64 SRVVILVGPSGSGKSCLANIWS-------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 R V+LVG +G+GK+ LA + + R ++ L+ + R+ L E + Sbjct: 81 QRNVVLVGGTGTGKTHLAIAIARSCIRSGARGRFYNVVDLVNRLEIETRNGRQGRLAEHL 140 Query: 117 ---DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 D + ++ LFH+++ +++ +S+++T W Sbjct: 141 TRMDFIVLDELGYLPFAQSGGQLLFHLVSRLYER-ASVIVTTNLAFGEWP 189 >gi|326794298|ref|YP_004312118.1| PhoH family protein [Marinomonas mediterranea MMB-1] gi|326545062|gb|ADZ90282.1| PhoH family protein [Marinomonas mediterranea MMB-1] Length = 466 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 8/76 (10%) Query: 50 EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109 A L+ S ++I+ GP+GSGK+ LA + + + + K + I++ Sbjct: 264 AMAFYLLRHD---NSDLMIMTGPAGSGKTLLALAY-----ALQVTMEEKRFNKIIVARST 315 Query: 110 PVLLEDIDLLDFNDTQ 125 P + EDI L + + Sbjct: 316 PPMAEDIGFLPGTEEE 331 >gi|326473474|gb|EGD97483.1| cell division control protein Cdc48 [Trichophyton tonsurans CBS 112818] gi|326480303|gb|EGE04313.1| cell division cycle protein 48 [Trichophyton equinum CBS 127.97] Length = 814 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 65/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 252 PPRGILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 311 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + + ++M A P S Sbjct: 312 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNIVVMAATNRPNSID-- 369 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + V I +PD +++ + + + + + Sbjct: 370 -PALR-RFGRFDREVDIGIPDPTGRLEILQ--IHTKNMKLGEDV 409 >gi|297849140|ref|XP_002892451.1| hypothetical protein ARALYDRAFT_311880 [Arabidopsis lyrata subsp. lyrata] gi|297338293|gb|EFH68710.1| hypothetical protein ARALYDRAFT_311880 [Arabidopsis lyrata subsp. lyrata] Length = 398 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 23/41 (56%) Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P P R +L GP G+GKS LA + ++ ST FS + L Sbjct: 133 PRRPWRAFLLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 173 >gi|283768399|ref|ZP_06341311.1| ATP-dependent metallopeptidase HflB [Bulleidia extructa W1219] gi|283104791|gb|EFC06163.1| ATP-dependent metallopeptidase HflB [Bulleidia extructa W1219] Length = 625 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 46/140 (32%), Gaps = 45/140 (32%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 ++LVGP G+GK+ LA + +S S + + Sbjct: 208 ILLVGPPGTGKTMLAKAVAGESNVPFISISGSEFIEMFVGMGASKVRDLFKKAKEKAPCI 267 Query: 111 VLLEDIDLLDF----------ND-----TQLFHIINSIHQYDSSLLMTARTFPVSW---- 151 V +++ID + ++ QL ++ + + +++ A P + Sbjct: 268 VFIDEIDAVGGKRTAGHMGGNDEREQTLNQLLTEMDGFEENNGIVILAATNRPENLDPAL 327 Query: 152 ----------GVCLPDLCSR 161 V LPDL R Sbjct: 328 LRPGRFDRRVPVELPDLQGR 347 >gi|301121234|ref|XP_002908344.1| ribosome biogenesis ATPase RIX7 [Phytophthora infestans T30-4] gi|262103375|gb|EEY61427.1| ribosome biogenesis ATPase RIX7 [Phytophthora infestans T30-4] Length = 800 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 62/169 (36%), Gaps = 43/169 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS----------------LDSILID 106 P R V+L GP G+GKS LA+ + + +T A D + Sbjct: 184 PPRGVLLHGPPGTGKSMLAHAIAGECGATFLKISAPEVVSGMSGESEQKLRELFDEAISR 243 Query: 107 TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL---LMTARTF---------PVSW--G 152 + +++ID + S + + L+T+ PV Sbjct: 244 APSIIFIDEIDAITPKRET------SARGMEKRIVAQLLTSTDSLSLENTGGKPVILIGA 297 Query: 153 VCLPD-LCSRLKAATVVK----ISLPDDDFLEKVIVKMFADRQIFIDKK 196 PD L S L+ A + +PD++ EK++ + R++ ++ + Sbjct: 298 TNRPDALDSALRRAGRFDREICLGIPDEEAREKILRVLA--RKMTLEGE 344 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 11/28 (39%), Positives = 16/28 (57%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS 94 V+L GP G GK+ LA + +S + S Sbjct: 516 VLLYGPPGCGKTLLAKAIAHESGANFIS 543 >gi|254585551|ref|XP_002498343.1| ZYRO0G08008p [Zygosaccharomyces rouxii] gi|238941237|emb|CAR29410.1| ZYRO0G08008p [Zygosaccharomyces rouxii] Length = 826 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P+ V+ L GP G GK+ LA +++SR+ S Sbjct: 550 PAGVL-LWGPPGCGKTLLAKAVANESRANFIS 580 >gi|255717218|ref|XP_002554890.1| KLTH0F16214p [Lachancea thermotolerans] gi|238936273|emb|CAR24453.1| KLTH0F16214p [Lachancea thermotolerans] Length = 434 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 21/45 (46%) Query: 70 VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 GP G+GK+ LA + ++ +T A L + I ++ + Sbjct: 221 YGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMFIGEGSKLVRD 265 >gi|254573410|ref|XP_002493814.1| One of six ATPases of the 19S regulatory particle of the 26S proteasome [Pichia pastoris GS115] gi|238033613|emb|CAY71635.1| One of six ATPases of the 19S regulatory particle of the 26S proteasome [Pichia pastoris GS115] Length = 416 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + + + A ++ I ++ E Sbjct: 193 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIRE 244 >gi|207728333|ref|YP_002256727.1| transposase protein [Ralstonia solanacearum MolK2] gi|206591579|emb|CAQ57191.1| probable transposase protein [Ralstonia solanacearum MolK2] Length = 291 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 45/127 (35%), Gaps = 30/127 (23%) Query: 54 RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP--- 110 I+ + V+L+GPSG GK+ +A+ + ++ + +++ Sbjct: 125 AFIERAEN-----VVLLGPSGVGKTHIASALAYRATQAGIKTRFITAADLMMQLATARQQ 179 Query: 111 ----------------VLLEDIDLLDF--NDTQLFHIINSI--HQYDSSLLMTARTFPVS 150 +++++I L F + LF N + ++++T+ Sbjct: 180 NRLREFFNRAVIGPRLLVIDEIGYLPFGREEADLF--FNVVAKRYERGAIVLTSNLPFTQ 237 Query: 151 WGVCLPD 157 W D Sbjct: 238 WATAFAD 244 >gi|195426391|ref|XP_002061318.1| GK20855 [Drosophila willistoni] gi|194157403|gb|EDW72304.1| GK20855 [Drosophila willistoni] Length = 753 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 21/43 (48%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109 V+LVGP G+GK+ LA + ++ F D +L+ Sbjct: 353 VLLVGPPGTGKTLLARAVAGEANVPFFHAAGPEFDEVLVGQGA 395 >gi|218441183|ref|YP_002379512.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7424] gi|218173911|gb|ACK72644.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7424] Length = 667 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 58/165 (35%), Gaps = 50/165 (30%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ T FS A + + T Sbjct: 239 VLLVGPPGTGKTLLAKAVAGEAGVTFFSISASEFIELFVGTGAARVRDLFKQAKEQAPCI 298 Query: 111 VLLEDIDLLDFN--------------DTQLFHIINSIH----QYDSSLLMTARTFPVSWG 152 + ++++D + + + L ++ + + +++ A P + Sbjct: 299 IFIDELDAIGKSRASGGAMSGGSDEREQTLNQLLTEMDGFSVGEATVIVLAATNRPETLD 358 Query: 153 VCL--------------PDLCSRLKAATVV--KISLPDDDFLEKV 181 L PDL R+ V KI L DD L+ + Sbjct: 359 SALLRPGRFDRQVLVDRPDLAGRMAILEVYARKIPLADDVDLKAL 403 >gi|57118029|gb|AAW34154.1| transposon related protein [Campylobacter jejuni] Length = 252 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 62/154 (40%), Gaps = 33/154 (21%) Query: 30 FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA---NIWSD 86 F F I++ L + +R +D+ + +IL+G SG GK+ LA I + Sbjct: 75 FDFEFQPKINKQQFLDFES----LRFLDN-----NSNIILIGNSGVGKTHLATSIGIAAA 125 Query: 87 KSRSTRF-------------SNIAKSLDSIL--IDTRKPVLLEDIDLLDFNDTQ---LFH 128 K R + + + I LD + K +++++I L + + F Sbjct: 126 KKRVSTYFIKCQDLIEQLKKAYIENKLDDRIKHFSKYKLLIIDEIGYLPIGEQEAKMFFQ 185 Query: 129 IINSIHQYDSSLLMTARTFPVSWGVCLPD--LCS 160 +I+ ++ S++ +T+ W D L S Sbjct: 186 LIDRRYEKKSTI-VTSNINLSDWNQIFLDNMLAS 218 >gi|50309793|ref|XP_454909.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49644044|emb|CAG99996.1| KLLA0E21209p [Kluyveromyces lactis] Length = 432 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 21/45 (46%) Query: 70 VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 GP G+GK+ LA + ++ +T A L + I ++ + Sbjct: 219 YGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRD 263 >gi|84999794|ref|XP_954618.1| polynucleotide kinase 3'-phosphatase-like protein [Theileria annulata] gi|65305616|emb|CAI73941.1| polynucleotide kinase 3'-phosphatase-like protein, putative [Theileria annulata] Length = 448 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 6/72 (8%) Query: 63 PSRVVILVGPSGSGKSCLANIWS-----DKSRSTRFSNIAKSLDSILIDTRKPVLLEDID 117 PS +++L+G SGK+ + I+ +S + +SL LI R+ V+++DI+ Sbjct: 286 PSGLILLIGNLSSGKTHFSRIFRNFTPMSQSDFGSTFHFMESLRKKLI-KRENVVIDDIN 344 Query: 118 LLDFNDTQLFHI 129 Q H+ Sbjct: 345 NTANERVQFVHL 356 >gi|9632638|ref|NP_049665.1| gp44 clamp loader subunit, DNA polymerase accessory protein [Enterobacteria phage T4] gi|228860985|ref|YP_002854008.1| gp44 clamp-loader subunit [Enterobacteria phage RB51] gi|228861365|ref|YP_002854386.1| gp44 clamp-loader subunit [Enterobacteria phage RB14] gi|330858577|ref|YP_004414952.1| putative clamp-loader subunit [Shigella phage Shfl2] gi|118810|sp|P04526|DPA44_BPT4 RecName: Full=DNA polymerase accessory protein 44; AltName: Full=Clamp loader large subunit; AltName: Full=Protein Gp44 gi|5354262|gb|AAD42469.1|AF158101_56 gp44 clamp loader subunit, DNA polymerase accessory protein [Enterobacteria phage T4] gi|215905|gb|AAC05394.1| DNA polymerase accessory protein g44 [Enterobacteria phage T4] gi|227438381|gb|ACP30694.1| gp44 clamp-loader subunit [Enterobacteria phage RB14] gi|227438659|gb|ACP30971.1| gp44 clamp-loader subunit [Enterobacteria phage RB51] gi|291290266|dbj|BAI83061.1| clamp loader subunit, DNA polymerase accessory protein [Enterobacteria phage AR1] gi|299780406|gb|ADJ39768.1| clamp loader small subunit [Enterobacteria phage T4T] gi|327397511|gb|AEA73013.1| putative clamp-loader subunit [Shigella phage Shfl2] Length = 319 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 71/184 (38%), Gaps = 36/184 (19%) Query: 65 RVVILVGPS-GSGKSCLANIWSDKSRS--------------TRFSNIAKSLDSILIDTRK 109 +IL PS G+GK+ +A + R + + +K Sbjct: 43 PHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKIDFVRGPLTNFASAASFDGRQK 102 Query: 110 PVLLEDIDLLDFNDTQLFHI--INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 +++++ D ++Q H+ + + S+++TA + + L SR V Sbjct: 103 VIVIDEFDRSGLAESQR-HLRSFMEAYSSNCSIIITA----NNIDGIIKPLQSR---CRV 154 Query: 168 VKISLPDD----DFLEKVIVKM---FADRQIFIDK-KLAAYIVQRMERSLVFAEKLVDKM 219 + P D + ++++I ++ I I K+ A +V++ + K + ++ Sbjct: 155 ITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKK---NFPDFRKTIGEL 211 Query: 220 DNLA 223 D+ + Sbjct: 212 DSYS 215 >gi|307103771|gb|EFN52029.1| hypothetical protein CHLNCDRAFT_139627 [Chlorella variabilis] Length = 945 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 43/208 (20%), Positives = 72/208 (34%), Gaps = 59/208 (28%) Query: 66 VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP--------------- 110 V+L GP+G+GK+ L+ + ++ +T F + + Sbjct: 676 TVLLYGPAGAGKTMLSMAAAHQAGATLFDLSPGTTAGKFPGKQAAIMVHMVFKAAHALAP 735 Query: 111 --VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMT--ARTFPVSWGVCLPDLCSRLKAAT 166 VL+ED+D + D + L+T P SR++ A Sbjct: 736 SVVLVEDVDHVFLTDRA------------RAALVTPPGGEPP-----------SRIRKAL 772 Query: 167 VVKIS--LPDDDFLEKVIVKMFADR-------QIFIDK-----KLAAYIVQRMERSLVFA 212 V +++ P D L V A R Q+ + L QR E L + Sbjct: 773 VAEVADLEPGDGVLACVKRDERALRTFIQRYIQLPLPDYGGRHALLQSFAQRDELVLGES 832 Query: 213 EKLVDKMDNLALSRGM--GITRSLAAEV 238 L+ ++ LS G + R LAA + Sbjct: 833 TALLAQL-TAGLSSGQLLEVVRQLAARL 859 >gi|296163468|ref|ZP_06846217.1| IstB domain protein ATP-binding protein [Burkholderia sp. Ch1-1] gi|295886283|gb|EFG66152.1| IstB domain protein ATP-binding protein [Burkholderia sp. Ch1-1] Length = 185 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 44/108 (40%), Gaps = 23/108 (21%) Query: 67 VILVGPSGSGKSCLANIW--------SDKSRSTRFSNIAKSLDSILIDTRK---PVLLED 115 ++LVG GSGK+ LA + R ++A +L+ R L Sbjct: 18 LVLVGGPGSGKTHLATAIGVSGVMHHGKRVRFYSTVDLANALEQEKAQGRAGRIAASLLR 77 Query: 116 IDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 +DL+ ++ LFH+++ ++++ +S+ +T W Sbjct: 78 LDLVILDELGYLPFSQAGGALLFHLLSRLYEH-TSVAVTTNLDFAEWS 124 >gi|296816168|ref|XP_002848421.1| cell division cycle protein 48 [Arthroderma otae CBS 113480] gi|238841446|gb|EEQ31108.1| cell division cycle protein 48 [Arthroderma otae CBS 113480] Length = 814 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 65/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 252 PPRGILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 311 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + + ++M A P S Sbjct: 312 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNIVVMAATNRPNSID-- 369 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + V I +PD +++ + + + + + Sbjct: 370 -PALR-RFGRFDREVDIGIPDPTGRLEILQ--IHTKNMKLGEDV 409 >gi|237838979|ref|XP_002368787.1| 26S proteasome subunit 4, putative [Toxoplasma gondii ME49] gi|211966451|gb|EEB01647.1| 26S proteasome subunit 4, putative [Toxoplasma gondii ME49] Length = 441 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 219 PPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRE 270 >gi|154292106|ref|XP_001546630.1| 26S protease regulatory subunit 6A [Botryotinia fuckeliana B05.10] gi|150846289|gb|EDN21482.1| 26S protease regulatory subunit 6A [Botryotinia fuckeliana B05.10] Length = 461 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 54/160 (33%), Gaps = 38/160 (23%) Query: 70 VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113 GP G+GK+ LA + ++ +T L + I ++ + Sbjct: 248 YGPPGTGKTLLARACAAQTDATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPAIIFI 307 Query: 114 EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158 +++D + + ++N D ++ A L L Sbjct: 308 DELDAVGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRIKVLAATNRVDVLDPAL--L 365 Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 S RL ++ LP+++ +++ R++ +D + Sbjct: 366 RSGRLD--RKIEFPLPNEEARAQIL--KIHSRKMTVDDAV 401 >gi|145347721|ref|XP_001418310.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144578539|gb|ABO96603.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 425 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ +A + ++ + L + I ++ + Sbjct: 205 PPKGVLLYGPPGTGKTLIARACAAQTNAAYLKLAGPLLVQMFIGDGAKLVRD 256 >gi|89893681|ref|YP_517168.1| hypothetical protein DSY0935 [Desulfitobacterium hafniense Y51] gi|89333129|dbj|BAE82724.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 1141 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 23/164 (14%), Positives = 63/164 (38%), Gaps = 22/164 (13%) Query: 58 SWPSWP-SRVVILVGPSGSGKSCLANIWS-------DKSRSTRFSNIAKSLDSILIDTRK 109 + W ++++++ G G GK+ +A + + + + ++I + ++ Sbjct: 189 ALREWSQNQIIVISGEPGVGKTTMAYLLALAYLQPDNLAGFIWANSIHDVYAMMDDQQKQ 248 Query: 110 PVLLEDI--------DLLDFNDTQLFHIINSIHQY--DSSLLMTARTFPVSWGV-CLPDL 158 ++L+D ++ +L +I I + L++T R + + G+ P L Sbjct: 249 VIILDDFWGSIFHDDHTRRNDENRLDKLIRRIIESKGQKRLILTTREYILQQGLQKHPAL 308 Query: 159 CSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 L + A + + +D ++ + Q+ Y+ Sbjct: 309 RETLAQYALICTMEEYGEDEKASILFRHLYASQLDYH--YVDYL 350 >gi|323701681|ref|ZP_08113353.1| phosphoribulokinase/uridine kinase [Desulfotomaculum nigrificans DSM 574] gi|323533454|gb|EGB23321.1| phosphoribulokinase/uridine kinase [Desulfotomaculum nigrificans DSM 574] Length = 555 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 6/82 (7%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID-TRKPVLLE---DIDLLD 120 R+V++ GPS SGK+ A S + + +A SLD +D P + D + +D Sbjct: 289 RIVLIAGPSSSGKTTFAQRLSIQLQVNGICPVAISLDDYFVDREHTPRDADGNYDFESID 348 Query: 121 FNDTQLF--HIINSIHQYDSSL 140 D LF H+I I + L Sbjct: 349 AIDRALFNEHLIKLIQGEEVEL 370 >gi|254573080|ref|XP_002493649.1| Putative ATPase of the AAA family [Pichia pastoris GS115] gi|238033448|emb|CAY71470.1| Putative ATPase of the AAA family [Pichia pastoris GS115] gi|328354523|emb|CCA40920.1| Protein SAP1 [Pichia pastoris CBS 7435] Length = 719 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 11/67 (16%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P+R ++L GP G+GK+ LA + +S+ST FS A SL S + + ++ Sbjct: 469 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTSKFLGESEKLV---------- 518 Query: 123 DTQLFHI 129 LF + Sbjct: 519 -RALFQL 524 >gi|221481315|gb|EEE19709.1| 26S proteasome subunit, putative [Toxoplasma gondii GT1] gi|221502038|gb|EEE27784.1| 26S proteasome subunit, putative [Toxoplasma gondii VEG] Length = 441 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 219 PPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRE 270 >gi|223994709|ref|XP_002287038.1| 26S proteasome regulatory particle chain rpt6-like protein [Thalassiosira pseudonana CCMP1335] gi|220978353|gb|EED96679.1| 26S proteasome regulatory particle chain rpt6-like protein [Thalassiosira pseudonana CCMP1335] Length = 271 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 52/148 (35%), Gaps = 47/148 (31%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN----------------IAKSLDSILID 106 P + ++L GP G+GK+ LA + +S +T + I+ + + Sbjct: 48 PPKGILLYGPPGTGKTMLAKAIAKESHATFVNVQLSSIMNKWFGESNKLISATFNLARKL 107 Query: 107 TRKPVLLEDIDLL----DFND--------TQLFHIINSIHQYDSSLLMTA---------- 144 V ++++D D + ++ + + + +L + Sbjct: 108 APSVVFIDEMDAFLSQRDGTEGSAVNSMKSEFLTLWDGLLSERKIVLPSPPIIVLGATNR 167 Query: 145 ---------RTFPVSWGVCLPDLCSRLK 163 R P S+ + LPD SRL+ Sbjct: 168 PYDVDPAILRRLPRSFEISLPDYSSRLQ 195 >gi|212691901|ref|ZP_03300029.1| hypothetical protein BACDOR_01396 [Bacteroides dorei DSM 17855] gi|212665573|gb|EEB26145.1| hypothetical protein BACDOR_01396 [Bacteroides dorei DSM 17855] Length = 236 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 22/112 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDTR 108 +IL+GPSG+GK+ LA + T + +++ I+ I Sbjct: 103 LILIGPSGTGKTFLAAGLVFDAVKTGYKAYLMTMEDIVNCLRLKDISTPAMMTYNKILRA 162 Query: 109 KPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 + + + DI L T F++IN++H+ +S+++T P L D Sbjct: 163 QLLAINDIMLFPVKRKEATAFFNLINTLHE-KTSIIITTNKAPTECVETLND 213 >gi|169858212|ref|XP_001835752.1| hypothetical protein CC1G_07176 [Coprinopsis cinerea okayama7#130] gi|116503202|gb|EAU86097.1| hypothetical protein CC1G_07176 [Coprinopsis cinerea okayama7#130] Length = 463 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 23/167 (13%), Positives = 56/167 (33%), Gaps = 38/167 (22%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + ++ GP G+GK+ LA + + + A SL + I ++ Sbjct: 243 PPKGCLMYGPPGTGKTLLARACAASTNACYLKLAAPSLVQMFIGDGAKLVRDAFALAKEK 302 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151 ++++D + + ++N + + ++ A Sbjct: 303 APAIIFIDELDAIGTKRFDSDKSGDREVQRTMLELLNQLDGFGSDERIKVIAATNRIDIL 362 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L L S RL ++ LP++ +++ R++ + Sbjct: 363 DPAL--LRSGRLD--RKIEFPLPNETARARILE--IHSRKMSCSPDV 403 >gi|67521818|ref|XP_658970.1| hypothetical protein AN1366.2 [Aspergillus nidulans FGSC A4] gi|40746393|gb|EAA65549.1| hypothetical protein AN1366.2 [Aspergillus nidulans FGSC A4] Length = 628 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 67/191 (35%), Gaps = 43/191 (22%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P R V+L GP G GK+ +AN ++ + S A S+ + Sbjct: 97 PPRGVLLHGPPGCGKTMIANAFAAELGVPFISISAPSIVSGMSGESEKALREHFEEAKRL 156 Query: 107 TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA- 165 + +++ID + NS + + ++ C+ DL L+ Sbjct: 157 APCLIFIDEIDAITPKRE------NSQREMEKRIV-------AQLLTCMDDLA--LEKTD 201 Query: 166 --TVVKISL---PD--DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218 V+ ++ PD D L + + + I++ + R + +LVD Sbjct: 202 GKPVIVLAATNRPDSLDAALRRGGRFDKEINMTVPSEPVREQILRALTRKM----RLVDD 257 Query: 219 MDNLALSRGMG 229 +D L++ Sbjct: 258 LDFKTLAKRTP 268 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 23/46 (50%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 V+L GP G GK+ LA +++SR+ S L + + + + Sbjct: 405 VLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAV 450 >gi|327300188|ref|XP_003234787.1| cell division control protein Cdc48 [Trichophyton rubrum CBS 118892] gi|326463681|gb|EGD89134.1| cell division control protein Cdc48 [Trichophyton rubrum CBS 118892] Length = 814 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 65/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 252 PPRGILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 311 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + + ++M A P S Sbjct: 312 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNIVVMAATNRPNSID-- 369 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + V I +PD +++ + + + + + Sbjct: 370 -PALR-RFGRFDREVDIGIPDPTGRLEILQ--IHTKNMKLGEDV 409 >gi|325089916|gb|EGC43226.1| DNA replication ATPase [Ajellomyces capsulatus H88] Length = 547 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 44/265 (16%), Positives = 93/265 (35%), Gaps = 46/265 (17%) Query: 2 NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDL----LVHSAIEQAVRLID 57 N +ED S V + ++ +N + S DD+ LV + LI+ Sbjct: 106 NFSEEDSSRLVKRSRTSNALENAA---PLAERMRPR-SLDDVYGQELVGPS-GVLRGLIE 160 Query: 58 SWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN-------------IAKSLDSIL 104 +IL G +G+GK+ +A + + S +++ + + Sbjct: 161 QDR---VPSMILWGGAGTGKTTIARVIAKMVGSRFVEINSTNSGVAECKKLFSEAKNELS 217 Query: 105 IDTRKPVLL-EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 + RK ++ ++I + +F + L+ A T S+ V L SR Sbjct: 218 LSGRKTIIFCDEIHRFSKSQQDVFL---GPVESGQITLIGATTENPSFKVQNA-LLSR-- 271 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIF------IDKKLAAYIVQRMERSLVFAEKLVD 217 ++ D+ + ++ + +D +L Y+ + + L++ Sbjct: 272 -CRTFTLAKLTDEDIVSILNRALKVEGPNYSPSPLVDDELIKYLAAFADGDARTSLNLLE 330 Query: 218 -KMD---NLALSR---GMGITRSLA 235 MD ++R +TR+L Sbjct: 331 LAMDLSRREGMTREDLKKSLTRTLV 355 >gi|302671634|ref|YP_003831594.1| recombination factor protein RarA [Butyrivibrio proteoclasticus B316] gi|302396107|gb|ADL35012.1| recombination factor protein RarA [Butyrivibrio proteoclasticus B316] Length = 440 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 32/200 (16%), Positives = 76/200 (38%), Gaps = 33/200 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G+GK+ LA + + +++ A ++ +++ + T L Sbjct: 55 IILYGPPGTGKTTLAKVIAGTTKAEFMQINATIAGKKDMEDVVNKAKDNLGMYGKK-TIL 113 Query: 127 F----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N + + +L+ A T + V L SR + + ++ Sbjct: 114 FIDEIHRFNKGQQDYLLPFVEDGTVILIGATTENPYFEVNGA-LISR---SIIFELKPLT 169 Query: 175 DDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 D ++ ++ + D R + ++ A ++ + A ++ ++ L+ Sbjct: 170 ADDIKVLLNRAVTDNERGMGAYKAVLETDAADFLADLAD---GDARHALNAIELGILTTP 226 Query: 228 MG------ITRSLAAEVLKE 241 IT+ +A E +++ Sbjct: 227 RSEDGLIHITKEVAEECIQK 246 >gi|302662987|ref|XP_003023142.1| hypothetical protein TRV_02721 [Trichophyton verrucosum HKI 0517] gi|291187123|gb|EFE42524.1| hypothetical protein TRV_02721 [Trichophyton verrucosum HKI 0517] Length = 903 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 65/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 341 PPRGILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 400 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + + ++M A P S Sbjct: 401 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNIVVMAATNRPNSID-- 458 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + V I +PD +++ + + + + + Sbjct: 459 -PALR-RFGRFDREVDIGIPDPTGRLEILQ--IHTKNMKLGEDV 498 >gi|305680500|ref|ZP_07403308.1| putative cell division protease FtsH [Corynebacterium matruchotii ATCC 14266] gi|305660031|gb|EFM49530.1| putative cell division protease FtsH [Corynebacterium matruchotii ATCC 14266] Length = 974 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 34/206 (16%), Positives = 64/206 (31%), Gaps = 49/206 (23%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110 R V+L GP G+GK+ LA + ++ +S + + Sbjct: 201 RGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFKQARENSP 260 Query: 111 --VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGV 153 + +++ID + + L + ++ + +LM A P Sbjct: 261 CIIFVDEIDAVGRQRGSGMGGGHDEREQTLNQLLVEMDGFGDREGVILMAATNRPDILDQ 320 Query: 154 CL--------------PDLCSRLKAATVVKISLP--DDDFLEKVIVKMFADRQIFIDKKL 197 L PDL R V P D L + + + L Sbjct: 321 ALLRPGRFDRQIPVTNPDLKGREAILKVHAEGKPFAKDVDLAALARRTAGMSGADLANVL 380 Query: 198 --AAYIVQRMERSLVFAEKLVDKMDN 221 AA + R+ +++ A+ L + D Sbjct: 381 NEAALLTARIGGNVITADALEEATDR 406 >gi|303273508|ref|XP_003056115.1| AAA ATPase [Micromonas pusilla CCMP1545] gi|226462199|gb|EEH59491.1| AAA ATPase [Micromonas pusilla CCMP1545] Length = 805 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P R ++L GPSG K+ LA + S +T + A + + + V+ + D Sbjct: 559 PHRGILLHGPSGCAKTTLARAIATTSGATVVALTAADIFDKYVGIGEKVIRDAFDRA 615 >gi|156086888|ref|XP_001610851.1| 26S protease regulatory subunit 4 [Babesia bovis T2Bo] gi|154798104|gb|EDO07283.1| 26S protease regulatory subunit 4, putative [Babesia bovis] Length = 438 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 216 PPKGVILYGPPGTGKTLLAKAVANETCATFLRVVGSELIQKYLGEGPKLVRE 267 >gi|24640100|ref|NP_572308.2| Rpt4 [Drosophila melanogaster] gi|22831810|gb|AAF46146.2| Rpt4 [Drosophila melanogaster] Length = 390 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + + ++ ++ I ++ E Sbjct: 167 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 218 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 219 ------MFNYARDHQ 227 >gi|330038957|ref|XP_003239746.1| cell division control protein 48 [Cryptomonas paramecium] gi|327206671|gb|AEA38848.1| cell division control protein 48 [Cryptomonas paramecium] Length = 753 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 16/74 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GPSGSGK+ +A +++S + + SN+ K + Sbjct: 221 PPRGILMYGPSGSGKTLIAKAIANESGANLYTLNGSEILAKTSNDSESNLKKIFQQAQCN 280 Query: 107 TRKPVLLEDIDLLD 120 + +L+++ID L Sbjct: 281 SPSIILIDEIDSLA 294 Score = 39.4 bits (91), Expect = 0.43, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 494 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESESNVREVFDKA 550 >gi|294102120|ref|YP_003553978.1| IstB domain protein ATP-binding protein [Aminobacterium colombiense DSM 12261] gi|293617100|gb|ADE57254.1| IstB domain protein ATP-binding protein [Aminobacterium colombiense DSM 12261] Length = 310 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 48/127 (37%), Gaps = 27/127 (21%) Query: 42 DLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLD 101 D ++ +A A+ ++ +IL G +G GK+ LA + + S + + Sbjct: 136 DPVIRTAKGLAMACVED-----GSSLILGGGTGVGKTHLAIAMIQELTAKGKSAVFVPVV 190 Query: 102 SILIDTRKPV----------LLEDIDLLDFN------------DTQLFHIINSIHQYDSS 139 IL + R ++D D + + D +LF +I++ ++ Sbjct: 191 EILDEIRAGFDEGTAYKIQQAVKDADCVAIDDLGAQRKDKSWVDERLFSLIDARYRSGKQ 250 Query: 140 LLMTART 146 ++T Sbjct: 251 TIITTNA 257 >gi|288957694|ref|YP_003448035.1| AAA ATPase, central domain protein [Azospirillum sp. B510] gi|288958866|ref|YP_003449207.1| AAA ATPase, central domain protein [Azospirillum sp. B510] gi|288910002|dbj|BAI71491.1| AAA ATPase, central domain protein [Azospirillum sp. B510] gi|288911174|dbj|BAI72663.1| AAA ATPase, central domain protein [Azospirillum sp. B510] Length = 304 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 52/164 (31%), Gaps = 43/164 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILID 106 P R +L GP G GK+ LA+ + + NI D+++ Sbjct: 57 PRRSALLFGPPGCGKTTLAHHLAARLGLPLVVVNMASLTSCYLGETGKNINALFDAVIEQ 116 Query: 107 TRKPVL-LEDIDLLDFNDTQ------------LFHIINSIHQYDSSLLMTARTF----PV 149 VL L++ D + + ++ I Q+ ++L P Sbjct: 117 ADSCVLFLDEFDSVCSKRRAAESSAGQERNAIVIALLQKIDQFPGTMLAATNRADDVDPA 176 Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFI 193 W + + I PDD+ + ++V+ + Sbjct: 177 IWR----------RFGLHLDIVEPDDECRQAILVRYLQPYSLSP 210 >gi|283138944|gb|ADB12547.1| ATPase [uncultured bacterium 9F08] Length = 449 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 28/176 (15%), Positives = 66/176 (37%), Gaps = 28/176 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRF-------------SNIAKSLDSILIDTRKPVLL 113 +I GP G+GK+ LA + + + + + ++ + + + Sbjct: 56 MIFWGPPGTGKTTLARMIAGHGEAQFITISAVLSGVKEIRAAVEQARQARQRGQATVLFV 115 Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++ + + F HI + + + A T S+ + L SR A V + Sbjct: 116 DEVHRFNKSQQDAFLPHI-----EDGTFTFIGATTENPSFELNNA-LLSR---ARVYVLK 166 Query: 172 LPDDDFLEKVIVKMFAD--RQI-FIDKKLAAYIVQRMERSLV-FAEKLVDKMDNLA 223 D +E ++ + D R + LA + +R+ + A + ++ ++ A Sbjct: 167 SLDSAEIETILQQALTDPERGLGRRPLVLADTLRRRIAEAADGDARRALNLLEIAA 222 >gi|258653471|ref|YP_003202627.1| ATPase AAA central domain-containing protein [Nakamurella multipartita DSM 44233] gi|258556696|gb|ACV79638.1| AAA ATPase central domain protein [Nakamurella multipartita DSM 44233] Length = 494 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 57/151 (37%), Gaps = 28/151 (18%) Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDTRKPVLLE 114 ++L GP G+GK+ LA + + + + S K + +++ + + Sbjct: 73 QGGAPSSMLLYGPPGTGKTTLATLVAGSTGRFFAQLSAVSAGVKEVRAVIAEATTRL--- 129 Query: 115 DIDLLDFNDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRL 162 T LF H + + + +L+ A T + V P L SR Sbjct: 130 ---RRTGEQTVLFIDEVHRFSRTQQDSLLGAVEDRTIVLVAATTENPFFSVVSP-LLSR- 184 Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD-RQIF 192 + ++++ D + ++I + AD R + Sbjct: 185 --SLILQLQPLTDTDISELIDRAVADERGLA 213 >gi|258568646|ref|XP_002585067.1| ribosome biogenesis ATPase RIX7 [Uncinocarpus reesii 1704] gi|237906513|gb|EEP80914.1| ribosome biogenesis ATPase RIX7 [Uncinocarpus reesii 1704] Length = 741 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 27/57 (47%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P R V+L GP G GK+ +AN ++ + S A S+ S + + L E D Sbjct: 207 PPRGVLLHGPPGCGKTLIANAFAAELGVPFISISAPSIVSGMSGESEKALREHFDEA 263 Score = 39.7 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 23/46 (50%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 V+L GP G GK+ LA +++SR+ S L + + + + Sbjct: 516 VLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAV 561 >gi|126659472|ref|ZP_01730605.1| cell division protein; FtsH [Cyanothece sp. CCY0110] gi|126619206|gb|EAZ89942.1| cell division protein; FtsH [Cyanothece sp. CCY0110] Length = 667 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 37/220 (16%), Positives = 72/220 (32%), Gaps = 58/220 (26%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ T FS A + + T Sbjct: 244 VLLVGPPGTGKTLLAKAVAGEAGVTFFSISASEFVELFVGTGAARVRDLFEQAKKQAPCI 303 Query: 111 VLLEDIDLLDFN--------------DTQLFHIIN----SIHQYDSSLLMTARTFPVSWG 152 + ++++D + + + L ++ + +++ A P + Sbjct: 304 IFIDELDAIGKSRSGGNGLSGSNDEREQTLNQLLTEMDGFAVGDATVIVLAATNRPETLD 363 Query: 153 VCL--------------PDLCSRLK----AATVVKISLPDDDFLEKVIVKMFADRQIFID 194 L PDL RL A V+I D L+ + + Sbjct: 364 SALLRPGRFDRQVLVDRPDLSGRLAILEIYAQRVEIDP--DVNLKDIATHTPGFAGADLA 421 Query: 195 KKL--AAYIVQRMERSLVFAEKLVDKMDN--LALSRGMGI 230 + AA + R +R V E + ++ L + + Sbjct: 422 NLVNEAALLAARNQREYVTQEDFKEAIERVVAGLEKKSRV 461 >gi|74003828|ref|XP_848524.1| PREDICTED: similar to peptidase (prosome, macropain) 26S subunit, ATPase 1 isoform 2 [Canis familiaris] Length = 440 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 218 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSQLIQKYLGNGPKLIRE 269 >gi|74003826|ref|XP_856279.1| PREDICTED: similar to peptidase (prosome, macropain) 26S subunit, ATPase 1 isoform 3 [Canis familiaris] Length = 414 Score = 41.3 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 192 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSQLIQKYLGNGPKLIRE 243 >gi|312211057|emb|CBX91143.1| similar to 26S protease regulatory subunit 6A [Leptosphaeria maculans] Length = 460 Score = 41.3 bits (96), Expect = 0.14, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 55/160 (34%), Gaps = 38/160 (23%) Query: 70 VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113 GP G+GK+ LA + ++ +T L + I ++ + Sbjct: 247 YGPPGTGKTLLARACAAQTDATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPSIIFI 306 Query: 114 EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158 +++D + + ++N D ++ A L L Sbjct: 307 DELDAVGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRVKVLAATNRVDVLDPAL--L 364 Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 S RL ++ LP+++ +++ R++ +D+ + Sbjct: 365 RSGRLD--RKIEFPLPNEEARAQIM--RIHSRKMTVDEGV 400 >gi|311993039|ref|YP_004009905.1| gp44 clamp loader subunit, DNA polymerase accessory protein [Enterobacteria phage CC31] gi|284177877|gb|ADB81543.1| gp44 clamp loader subunit, DNA polymerase accessory protein [Enterobacteria phage CC31] Length = 319 Score = 41.3 bits (96), Expect = 0.14, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 69/185 (37%), Gaps = 38/185 (20%) Query: 65 RVVILVGPS-GSGKSCLANIWSDKSR--------------STRFSNIAKSLDSILIDTRK 109 +ILV S G+GK+ LA + R + + L +K Sbjct: 43 PHMILVSASPGTGKTTLAKALCNDVGVEMMFVNGSDCKIDFVRGPLTNFATAASLSGKQK 102 Query: 110 PVLLEDIDLLDFNDTQLFHI--INSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 +++++ D ++Q H+ + + ++++TA G+ P L SR V Sbjct: 103 VIVIDEFDRSGLAESQR-HLRSFMEAYSSNCTIIITAN---NIDGIIEP-LQSR---CRV 154 Query: 168 VKISLPDDDFLEKVIVKMFADRQIFI---------DKKLAAYIVQRMERSLVFAEKLVDK 218 +K DD + +K R + I D K+ A +V + + K + Sbjct: 155 IKFGQATDDDKRNM-MKEMIRRCVEICKNENIKVEDLKVIAALVNK---NFPDFRKTIGD 210 Query: 219 MDNLA 223 +D+ + Sbjct: 211 LDHYS 215 >gi|330918132|ref|XP_003298101.1| hypothetical protein PTT_08703 [Pyrenophora teres f. teres 0-1] gi|311328886|gb|EFQ93795.1| hypothetical protein PTT_08703 [Pyrenophora teres f. teres 0-1] Length = 460 Score = 41.3 bits (96), Expect = 0.14, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 54/160 (33%), Gaps = 38/160 (23%) Query: 70 VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113 GP G+GK+ LA + ++ +T L + I ++ + Sbjct: 247 YGPPGTGKTLLARACAAQTDATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPSIIFI 306 Query: 114 EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158 +++D + + ++N D ++ A L L Sbjct: 307 DELDAVGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRVKVLAATNRVDVLDPAL--L 364 Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 S RL ++ LP+++ +++ R++ +D + Sbjct: 365 RSGRLD--RKIEFPLPNEEARAQIM--RIHSRKMTVDDAV 400 >gi|302686514|ref|XP_003032937.1| hypothetical protein SCHCODRAFT_85085 [Schizophyllum commune H4-8] gi|300106631|gb|EFI98034.1| hypothetical protein SCHCODRAFT_85085 [Schizophyllum commune H4-8] Length = 814 Score = 41.3 bits (96), Expect = 0.14, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 64/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 241 PPRGILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 300 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + + ++M A P S Sbjct: 301 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGLKARSNVVVMAATNRPNSID-- 358 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + V I +PD +++ + + + + Sbjct: 359 -PALR-RFGRFDREVDIGIPDPTGRLEIL--RIHTKNMKLADDV 398 >gi|296087957|emb|CBI35240.3| unnamed protein product [Vitis vinifera] Length = 380 Score = 41.3 bits (96), Expect = 0.14, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 46/141 (32%), Gaps = 42/141 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS----------------ILID 106 P R +L GP G+GKS LA + ++ ST FS + L S Sbjct: 109 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFQMARES 168 Query: 107 TRKPVLLEDIDLLDFND--------------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 + +++ID L L + H L++ A P S Sbjct: 169 APSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYSLD 228 Query: 153 ------------VCLPDLCSR 161 + LPDL +R Sbjct: 229 QAIRRRFDKRIYIPLPDLKAR 249 >gi|221501683|gb|EEE27447.1| 26S protease regulatory subunit S10b, putative [Toxoplasma gondii VEG] Length = 654 Score = 41.3 bits (96), Expect = 0.14, Method: Composition-based stats. Identities = 28/180 (15%), Positives = 66/180 (36%), Gaps = 44/180 (24%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL-------------- 112 V++ GP G+GK+ LA + ++++T L + I ++ Sbjct: 437 VLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKMVRDAFELAKEKAPAI 496 Query: 113 --LEDIDLLDFN------------DTQLFHIINSIH---QYDSSLLMTARTFPVSWGVCL 155 ++++D + + ++N + D ++ A P L Sbjct: 497 IFIDELDAIGTKRFDSELSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRPDVLDPAL 556 Query: 156 PDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 L S RL +++ P+++ E+++ R++ ++K+ + R L A Sbjct: 557 --LRSGRLD--RKIELPHPNEEARERILQIHA--RKMNVNKEDVNF------RELARATD 604 >gi|189205058|ref|XP_001938864.1| 26S protease regulatory subunit 6A [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187985963|gb|EDU51451.1| 26S protease regulatory subunit 6A [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 460 Score = 41.3 bits (96), Expect = 0.14, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 54/160 (33%), Gaps = 38/160 (23%) Query: 70 VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113 GP G+GK+ LA + ++ +T L + I ++ + Sbjct: 247 YGPPGTGKTLLARACAAQTDATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPSIIFI 306 Query: 114 EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158 +++D + + ++N D ++ A L L Sbjct: 307 DELDAVGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRVKVLAATNRVDVLDPAL--L 364 Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 S RL ++ LP+++ +++ R++ +D + Sbjct: 365 RSGRLD--RKIEFPLPNEEARAQIM--RIHSRKMTVDDAV 400 >gi|50284915|ref|XP_444885.1| hypothetical protein [Candida glabrata CBS 138] gi|49524187|emb|CAG57778.1| unnamed protein product [Candida glabrata] Length = 429 Score = 41.3 bits (96), Expect = 0.14, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 21/45 (46%) Query: 70 VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 GP G+GK+ LA + ++ +T A L + I ++ + Sbjct: 216 YGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMFIGEGAKLVRD 260 >gi|71005554|ref|XP_757443.1| hypothetical protein UM01296.1 [Ustilago maydis 521] gi|46096926|gb|EAK82159.1| hypothetical protein UM01296.1 [Ustilago maydis 521] Length = 878 Score = 41.3 bits (96), Expect = 0.14, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 46/128 (35%), Gaps = 29/128 (22%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF--------------SNIAKSLDSILIDTR 108 S V+L GP G GK+ LA +++SR+ S A T Sbjct: 593 ASSGVLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESEKAVRQVFARARTS 652 Query: 109 KPVLL--EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 P ++ +++D + + D SL ++ + L L SR++ Sbjct: 653 SPCVIFFDELDA-------------LVPRRDDSLSESSSRVVNTLLTELDGLESRVQTYV 699 Query: 167 VVKISLPD 174 + + PD Sbjct: 700 IAATNRPD 707 >gi|332666626|ref|YP_004449414.1| ABC transporter-like protein [Haliscomenobacter hydrossis DSM 1100] gi|332335440|gb|AEE52541.1| ABC transporter related protein [Haliscomenobacter hydrossis DSM 1100] Length = 205 Score = 41.3 bits (96), Expect = 0.14, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 7/73 (9%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSR------STRFSNIAKSLDSILI-DTRKPVLLED 115 P + + GP+GSGKS L + + ++ LD + +E Sbjct: 27 PGSRMAITGPNGSGKSTLLKMICGHLTPSKGQVAYSIADKKLELDQVYAHLAYAAPYIEL 86 Query: 116 IDLLDFNDTQLFH 128 I+ + FH Sbjct: 87 IEEFSLQEAIDFH 99 >gi|159466846|ref|XP_001691609.1| cdc48-like protein [Chlamydomonas reinhardtii] gi|158278955|gb|EDP04717.1| cdc48-like protein [Chlamydomonas reinhardtii] Length = 685 Score = 41.3 bits (96), Expect = 0.14, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 13/66 (19%) Query: 51 QAVRLIDSWP------------SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAK 98 QA+R + +WP WP R ++L GP G GK+ L + ++ + A Sbjct: 84 QALRELVAWPVLYAAQGAALGVRWP-RGLLLHGPPGCGKTLLVQAVAAEAGAVLHVVTAA 142 Query: 99 SLDSIL 104 + Sbjct: 143 RVTGAY 148 >gi|115374473|ref|ZP_01461755.1| ClpX C4-type zinc finger, putative [Stigmatella aurantiaca DW4/3-1] gi|310821916|ref|YP_003954274.1| hypothetical protein STAUR_4667 [Stigmatella aurantiaca DW4/3-1] gi|115368565|gb|EAU67518.1| ClpX C4-type zinc finger, putative [Stigmatella aurantiaca DW4/3-1] gi|309394988|gb|ADO72447.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1] Length = 511 Score = 41.3 bits (96), Expect = 0.14, Method: Composition-based stats. Identities = 41/215 (19%), Positives = 71/215 (33%), Gaps = 33/215 (15%) Query: 33 PRCLGISRDDL-LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91 P + LV A QA L++ +R ++++GP G GKS + + ++ T Sbjct: 277 PPRAAAGPEVFELVGQAEPQA--LLEKGILAGARRMLILGPEGVGKSLWFQVLAKRAMGT 334 Query: 92 RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTAR-----T 146 S A S L+ED+D L F D +LM+AR Sbjct: 335 VMSLEALEQGS----GNGVALVEDVDRLPVEAQLRFGDF-LRRHPDRVVLMSARGSLGAD 389 Query: 147 FPVSWGVCLPDLCSRLKAA------------------TVVKISLPDDDFLEKVIVKMFAD 188 P+ L R A V + +P + ++ + A Sbjct: 390 PPLMLRGGTGSLLVRTTEALFKAVQGTLPLPLLEHVQLCVALQVPTEAEYVEIARRRLAP 449 Query: 189 R--QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 R + + ++ A RS +L ++ Sbjct: 450 RAPESTVSPEVIALFAAEAVRSPRAGHELNALLNR 484 >gi|157827821|ref|YP_001496885.1| ATP-dependent metalloprotease FtsH [Rickettsia bellii OSU 85-389] gi|157803125|gb|ABV79848.1| ATP-dependent metalloprotease FtsH [Rickettsia bellii OSU 85-389] Length = 637 Score = 41.3 bits (96), Expect = 0.14, Method: Composition-based stats. Identities = 30/198 (15%), Positives = 67/198 (33%), Gaps = 47/198 (23%) Query: 68 ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP----------------V 111 +L+GP G+GK+ LA + ++ FS + + + Sbjct: 192 LLIGPPGTGKTLLAKAIAGEANVPFFSISGSDFVEMFVGVGASRVRDMFEQGKRNAPCII 251 Query: 112 LLEDIDLLDF----------NDTQLFHIINSIH-------QYDSSLLMTARTFPVSWGVC 154 +++ID + ++ + +N + + +++ A P Sbjct: 252 FIDEIDAVGRHRGIGMGGGNDERE--QTLNQMLVEMDGFEANEGVVIIAATNRPDVLDNA 309 Query: 155 LPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211 L L+ + +S PD D EK++ +++ K+ I+ R Sbjct: 310 L------LRPGRFDRQITVSNPDIDGREKILQVHL--KKVKYSTKIVPRIIARGTPGFSG 361 Query: 212 AEKLVDKMDNLALSRGMG 229 A +L + ++ AL Sbjct: 362 A-ELANLVNEAALIAARR 378 >gi|329725069|gb|EGG61564.1| ATP-dependent metallopeptidase HflB [Staphylococcus aureus subsp. aureus 21172] Length = 697 Score = 41.3 bits (96), Expect = 0.14, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 V+LVGP G+GK+ LA + ++ + FS + + + + D N Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFDNAKKN 256 >gi|321157181|emb|CBW39166.1| AAA+ ATPase [Streptococcus phage 11865] Length = 256 Score = 41.3 bits (96), Expect = 0.14, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 16/30 (53%) Query: 52 AVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 A R+ W ++L G +G+GKS LA Sbjct: 106 AKRICREWSEGARNNIVLQGEAGTGKSHLA 135 >gi|315054197|ref|XP_003176473.1| vacuolar protein sorting-associated protein 4 [Arthroderma gypseum CBS 118893] gi|311338319|gb|EFQ97521.1| vacuolar protein sorting-associated protein 4 [Arthroderma gypseum CBS 118893] Length = 434 Score = 41.3 bits (96), Expect = 0.14, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 14/80 (17%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + ++L GP G+GKS LA + ++ ST FS + L S + + ++ Sbjct: 164 PWKGILLYGPPGTGKSYLAKAVATEANSTFFSISSSDLVSKWMGESERLV---------- 213 Query: 123 DTQLFHIINSIHQYDSSLLM 142 QLF N + +++ Sbjct: 214 -KQLF---NMARENKPAIVF 229 >gi|307126206|ref|YP_003878237.1| gp21 [Streptococcus pneumoniae 670-6B] gi|306483268|gb|ADM90137.1| gp21 [Streptococcus pneumoniae 670-6B] Length = 256 Score = 41.3 bits (96), Expect = 0.14, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 16/30 (53%) Query: 52 AVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 A R+ W ++L G +G+GKS LA Sbjct: 106 AKRICREWSEGARNNIVLQGEAGTGKSHLA 135 >gi|302750402|gb|ADL64579.1| cell-division protein (ATP-dependent Zn metallopeptidase) [Staphylococcus aureus subsp. aureus str. JKD6008] Length = 667 Score = 41.3 bits (96), Expect = 0.14, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 V+LVGP G+GK+ LA + ++ + FS + + + + D N Sbjct: 171 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFDNAKKN 226 >gi|298693841|gb|ADI97063.1| cell division protein FtsH, putative [Staphylococcus aureus subsp. aureus ED133] gi|323438743|gb|EGA96483.1| cell division protein [Staphylococcus aureus O11] gi|323442045|gb|EGA99680.1| cell division protein [Staphylococcus aureus O46] Length = 697 Score = 41.3 bits (96), Expect = 0.14, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 V+LVGP G+GK+ LA + ++ + FS + + + + D N Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFDNAKKN 256 >gi|282915829|ref|ZP_06323597.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus D139] gi|282320320|gb|EFB50662.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus D139] Length = 697 Score = 41.3 bits (96), Expect = 0.14, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 V+LVGP G+GK+ LA + ++ + FS + + + + D N Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFDNAKKN 256 >gi|282918292|ref|ZP_06326032.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus C427] gi|282317858|gb|EFB48227.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus C427] Length = 697 Score = 41.3 bits (96), Expect = 0.14, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 V+LVGP G+GK+ LA + ++ + FS + + + + D N Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFDNAKKN 256 >gi|258424453|ref|ZP_05687332.1| cell-division protein [Staphylococcus aureus A9635] gi|257845322|gb|EEV69357.1| cell-division protein [Staphylococcus aureus A9635] Length = 697 Score = 41.3 bits (96), Expect = 0.14, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 V+LVGP G+GK+ LA + ++ + FS + + + + D N Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFDNAKKN 256 >gi|242065978|ref|XP_002454278.1| hypothetical protein SORBIDRAFT_04g027890 [Sorghum bicolor] gi|241934109|gb|EES07254.1| hypothetical protein SORBIDRAFT_04g027890 [Sorghum bicolor] Length = 973 Score = 41.3 bits (96), Expect = 0.14, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 50/144 (34%), Gaps = 43/144 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------ILIDTR 108 P + V+L GP G+GK+ LA + ++ + S +L S Sbjct: 716 PCKGVLLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASRL 775 Query: 109 KPVLL--EDIDLLDFNDTQLF-H-----IIN---------SIHQYDSSLLMTA------- 144 PV++ +++D L F H + N + L++ A Sbjct: 776 APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDGLRSKESQRILILGATNRPFDL 835 Query: 145 -----RTFPVSWGVCLPDLCSRLK 163 R P V LPD +R+K Sbjct: 836 DDAVIRRLPRRIYVDLPDAQNRMK 859 >gi|209879531|ref|XP_002141206.1| 26S proteasome subunit 4 [Cryptosporidium muris RN66] gi|209556812|gb|EEA06857.1| 26S proteasome subunit 4, putative [Cryptosporidium muris RN66] Length = 447 Score = 41.3 bits (96), Expect = 0.14, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 225 PPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRE 276 >gi|168490133|ref|ZP_02714332.1| gp21 [Streptococcus pneumoniae SP195] gi|183571502|gb|EDT92030.1| gp21 [Streptococcus pneumoniae SP195] Length = 256 Score = 41.3 bits (96), Expect = 0.14, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 16/30 (53%) Query: 52 AVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 A R+ W ++L G +G+GKS LA Sbjct: 106 AKRICREWSEGARNNIVLQGEAGTGKSHLA 135 >gi|138896158|ref|YP_001126611.1| Holliday junction DNA helicase RuvB [Geobacillus thermodenitrificans NG80-2] gi|166231496|sp|A4IRB2|RUVB_GEOTN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|134267671|gb|ABO67866.1| Holliday junction DNA helicase RuvB [Geobacillus thermodenitrificans NG80-2] Length = 333 Score = 41.3 bits (96), Expect = 0.14, Method: Composition-based stats. Identities = 47/210 (22%), Positives = 78/210 (37%), Gaps = 45/210 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G GK+ LA I +++ + +L+ LE D+L ++ Sbjct: 56 VLLYGPPGLGKTTLAAIIANEMGVKMRATSGPALERPGDLAALLTSLEPGDVLFIDEI-- 113 Query: 127 FHIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDL--------------------- 158 H + + D L +T P + + L DL Sbjct: 114 -HRLPRTVEEVLYPAMEDYCLDITVGKGPEARSLRL-DLPPFTLVGATTRAGALSAPLRD 171 Query: 159 ----CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 SRL+ V D L ++I + A I I+ + A + +R + A + Sbjct: 172 RFGVISRLEYYQV--------DQLAQIIERAAAILHIIINNEAALELARRARGTPRIANR 223 Query: 215 LVDKMDNLALSRG-MGITRSLAAEVLKETQ 243 L+ ++ + A RG IT LA E L+ Q Sbjct: 224 LLRRVRDFAQVRGDGEITLPLAVEALERLQ 253 >gi|119184765|ref|XP_001243250.1| hypothetical protein CIMG_07146 [Coccidioides immitis RS] Length = 697 Score = 41.3 bits (96), Expect = 0.14, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 27/57 (47%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P R V+L GP G GK+ +AN ++ + + A S+ S + + L E D Sbjct: 207 PPRGVLLHGPPGCGKTLIANAFAAELGVPFIAISAPSIVSGMSGESEKALREHFDEA 263 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 23/46 (50%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 V+L GP G GK+ LA +++SR+ S L + + + + Sbjct: 516 VLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAV 561 >gi|57651387|ref|YP_185443.1| cell division protein FtsH, putative [Staphylococcus aureus subsp. aureus COL] gi|87161534|ref|YP_493198.1| putative cell division protein FtsH [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|151220685|ref|YP_001331507.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus str. Newman] gi|161508751|ref|YP_001574410.1| cell division protein FtsH [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142297|ref|ZP_03566790.1| cell division protein FtsH [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258452808|ref|ZP_05700803.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus A5948] gi|262049996|ref|ZP_06022855.1| cell-division protein [Staphylococcus aureus D30] gi|282925586|ref|ZP_06333239.1| cell division protease FtsH [Staphylococcus aureus A9765] gi|284023520|ref|ZP_06377918.1| putative cell division protein FtsH [Staphylococcus aureus subsp. aureus 132] gi|294850371|ref|ZP_06791104.1| cell division protease FtsH [Staphylococcus aureus A9754] gi|304380529|ref|ZP_07363205.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|57285573|gb|AAW37667.1| cell division protein FtsH, putative [Staphylococcus aureus subsp. aureus COL] gi|87127508|gb|ABD22022.1| putative cell division protein FtsH [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|150373485|dbj|BAF66745.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus str. Newman] gi|160367560|gb|ABX28531.1| cell division protein FtsH [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257859494|gb|EEV82347.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus A5948] gi|259161931|gb|EEW46514.1| cell-division protein [Staphylococcus aureus D30] gi|269940082|emb|CBI48458.1| putative cell division protein [Staphylococcus aureus subsp. aureus TW20] gi|282592490|gb|EFB97502.1| cell division protease FtsH [Staphylococcus aureus A9765] gi|294822795|gb|EFG39231.1| cell division protease FtsH [Staphylococcus aureus A9754] gi|304340933|gb|EFM06857.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315196194|gb|EFU26550.1| cell division protein FtsH [Staphylococcus aureus subsp. aureus CGS01] gi|320139402|gb|EFW31280.1| ATP-dependent metallopeptidase HflB [Staphylococcus aureus subsp. aureus MRSA131] gi|320144179|gb|EFW35947.1| ATP-dependent metallopeptidase HflB [Staphylococcus aureus subsp. aureus MRSA177] gi|329313230|gb|AEB87643.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus T0131] Length = 697 Score = 41.3 bits (96), Expect = 0.14, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 V+LVGP G+GK+ LA + ++ + FS + + + + D N Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFDNAKKN 256 >gi|118581430|ref|YP_902680.1| ABC transporter-like protein [Pelobacter propionicus DSM 2379] gi|118504140|gb|ABL00623.1| ABC transporter related protein [Pelobacter propionicus DSM 2379] Length = 582 Score = 41.3 bits (96), Expect = 0.14, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 9/69 (13%) Query: 63 PSRVVILVGPSGSGKSCLANI---WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P+ +V LVGPSGSGKS L ++ + D + + + D L + L D Sbjct: 360 PNSMVALVGPSGSGKSTLVSLLPRFYDVAGGSITIDGYDIRDLTLDSLVNQIALVD---- 415 Query: 120 DFNDTQLFH 128 +T LFH Sbjct: 416 --QETTLFH 422 >gi|15923501|ref|NP_371035.1| cell-division protein [Staphylococcus aureus subsp. aureus Mu50] gi|15926188|ref|NP_373721.1| cell-division protein [Staphylococcus aureus subsp. aureus N315] gi|21282195|ref|NP_645283.1| cell-division protein (ATP-dependent Zn metallopeptidase) [Staphylococcus aureus subsp. aureus MW2] gi|49482738|ref|YP_039962.1| cell division protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49485375|ref|YP_042596.1| putative cell division protein [Staphylococcus aureus subsp. aureus MSSA476] gi|88194271|ref|YP_499063.1| hypothetical protein SAOUHSC_00486 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148266970|ref|YP_001245913.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus JH9] gi|150393016|ref|YP_001315691.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus JH1] gi|156978839|ref|YP_001441098.1| cell-division protein [Staphylococcus aureus subsp. aureus Mu3] gi|253315220|ref|ZP_04838433.1| cell-division protein [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253730979|ref|ZP_04865144.1| cell division protein FtsH [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253735246|ref|ZP_04869411.1| cell division protein FtsH [Staphylococcus aureus subsp. aureus TCH130] gi|255005304|ref|ZP_05143905.2| cell-division protein [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257424623|ref|ZP_05601051.1| cell-division protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257427289|ref|ZP_05603690.1| cell-division protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257429926|ref|ZP_05606312.1| cell-division protein [Staphylococcus aureus subsp. aureus 68-397] gi|257432628|ref|ZP_05608990.1| cell-division protein [Staphylococcus aureus subsp. aureus E1410] gi|257435532|ref|ZP_05611582.1| cell-division protein [Staphylococcus aureus subsp. aureus M876] gi|257794249|ref|ZP_05643228.1| cell division protein [Staphylococcus aureus A9781] gi|258407234|ref|ZP_05680379.1| cell division protein [Staphylococcus aureus A9763] gi|258420798|ref|ZP_05683734.1| conserved hypothetical protein [Staphylococcus aureus A9719] gi|258429628|ref|ZP_05688302.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus A9299] gi|258446102|ref|ZP_05694263.1| cell-division protein [Staphylococcus aureus A6300] gi|258448010|ref|ZP_05696140.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus A6224] gi|258453844|ref|ZP_05701817.1| cell-division protein [Staphylococcus aureus A5937] gi|269202131|ref|YP_003281400.1| cell division protein FtsH, putative [Staphylococcus aureus subsp. aureus ED98] gi|282895119|ref|ZP_06303339.1| cell division protease FtsH [Staphylococcus aureus A8117] gi|282903097|ref|ZP_06310989.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus C160] gi|282904886|ref|ZP_06312746.1| cell-division protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282907833|ref|ZP_06315671.1| cell-division protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910149|ref|ZP_06317955.1| cell-division protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282913339|ref|ZP_06321130.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus M899] gi|282923043|ref|ZP_06330729.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus C101] gi|283768946|ref|ZP_06341855.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus H19] gi|283957301|ref|ZP_06374759.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus A017934/97] gi|293500388|ref|ZP_06666240.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus 58-424] gi|293509327|ref|ZP_06668043.1| cell division protease ftsH [Staphylococcus aureus subsp. aureus M809] gi|293515915|ref|ZP_06670605.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus M1015] gi|295407401|ref|ZP_06817198.1| cell division protease FtsH [Staphylococcus aureus A8819] gi|295427045|ref|ZP_06819682.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus EMRSA16] gi|296276164|ref|ZP_06858671.1| cell division protein FtsH, putative [Staphylococcus aureus subsp. aureus MR1] gi|297207386|ref|ZP_06923825.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297246481|ref|ZP_06930321.1| cell division protease FtsH [Staphylococcus aureus A8796] gi|297591578|ref|ZP_06950215.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus MN8] gi|300910345|ref|ZP_07127798.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus TCH70] gi|13700401|dbj|BAB41699.1| cell-division protein [Staphylococcus aureus subsp. aureus N315] gi|14246279|dbj|BAB56673.1| cell-division protein [Staphylococcus aureus subsp. aureus Mu50] gi|21203631|dbj|BAB94331.1| cell-division protein [Staphylococcus aureus subsp. aureus MW2] gi|49240867|emb|CAG39534.1| putative cell division protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49243818|emb|CAG42243.1| putative cell division protein [Staphylococcus aureus subsp. aureus MSSA476] gi|87201829|gb|ABD29639.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147740039|gb|ABQ48337.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus JH9] gi|149945468|gb|ABR51404.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus JH1] gi|156720974|dbj|BAF77391.1| cell-division protein [Staphylococcus aureus subsp. aureus Mu3] gi|253725291|gb|EES94020.1| cell division protein FtsH [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253726806|gb|EES95535.1| cell division protein FtsH [Staphylococcus aureus subsp. aureus TCH130] gi|257272650|gb|EEV04770.1| cell-division protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257275940|gb|EEV07408.1| cell-division protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257279442|gb|EEV10037.1| cell-division protein [Staphylococcus aureus subsp. aureus 68-397] gi|257282493|gb|EEV12626.1| cell-division protein [Staphylococcus aureus subsp. aureus E1410] gi|257285169|gb|EEV15286.1| cell-division protein [Staphylococcus aureus subsp. aureus M876] gi|257788221|gb|EEV26561.1| cell division protein [Staphylococcus aureus A9781] gi|257841192|gb|EEV65641.1| cell division protein [Staphylococcus aureus A9763] gi|257843190|gb|EEV67603.1| conserved hypothetical protein [Staphylococcus aureus A9719] gi|257849687|gb|EEV73654.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus A9299] gi|257855079|gb|EEV78021.1| cell-division protein [Staphylococcus aureus A6300] gi|257858700|gb|EEV81573.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus A6224] gi|257864015|gb|EEV86770.1| cell-division protein [Staphylococcus aureus A5937] gi|262074421|gb|ACY10394.1| cell division protein FtsH, putative [Staphylococcus aureus subsp. aureus ED98] gi|282314562|gb|EFB44949.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus C101] gi|282322810|gb|EFB53130.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus M899] gi|282325997|gb|EFB56303.1| cell-division protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282328309|gb|EFB58584.1| cell-division protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282332003|gb|EFB61512.1| cell-division protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282596523|gb|EFC01483.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus C160] gi|282762537|gb|EFC02677.1| cell division protease FtsH [Staphylococcus aureus A8117] gi|283461127|gb|EFC08213.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus H19] gi|283469803|emb|CAQ49014.1| putative Cell division protease FtsH homolog [Staphylococcus aureus subsp. aureus ST398] gi|283791225|gb|EFC30035.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus A017934/97] gi|285816210|gb|ADC36697.1| Cell division protein FtsH [Staphylococcus aureus 04-02981] gi|290921323|gb|EFD98381.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus M1015] gi|291096348|gb|EFE26608.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus 58-424] gi|291467872|gb|EFF10382.1| cell division protease ftsH [Staphylococcus aureus subsp. aureus M809] gi|294967758|gb|EFG43790.1| cell division protease FtsH [Staphylococcus aureus A8819] gi|295129048|gb|EFG58677.1| cell division protease FtsH [Staphylococcus aureus subsp. aureus EMRSA16] gi|296887949|gb|EFH26843.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297176668|gb|EFH35930.1| cell division protease FtsH [Staphylococcus aureus A8796] gi|297575447|gb|EFH94164.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus MN8] gi|300888334|gb|EFK83521.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus TCH70] gi|302332224|gb|ADL22417.1| cell-division protein (ATP-dependent Zn metallopeptidase) [Staphylococcus aureus subsp. aureus JKD6159] gi|312436399|gb|ADQ75470.1| ATP-dependent metalloprotease FtsH [Staphylococcus aureus subsp. aureus TCH60] gi|312829006|emb|CBX33848.1| cell division protease ftsH homolog [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315128639|gb|EFT84642.1| cell-division protein [Staphylococcus aureus subsp. aureus CGS03] gi|315193873|gb|EFU24267.1| cell-division protein [Staphylococcus aureus subsp. aureus CGS00] gi|329729768|gb|EGG66165.1| ATP-dependent metallopeptidase HflB [Staphylococcus aureus subsp. aureus 21189] gi|329731083|gb|EGG67455.1| ATP-dependent metallopeptidase HflB [Staphylococcus aureus subsp. aureus 21193] Length = 697 Score = 41.3 bits (96), Expect = 0.14, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 V+LVGP G+GK+ LA + ++ + FS + + + + D N Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFDNAKKN 256 >gi|302839635|ref|XP_002951374.1| 26S proteasome regulatory complex [Volvox carteri f. nagariensis] gi|300263349|gb|EFJ47550.1| 26S proteasome regulatory complex [Volvox carteri f. nagariensis] Length = 361 Score = 41.3 bits (96), Expect = 0.14, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + + ++ ++ I ++ E Sbjct: 169 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIVDKYIGESARIIRE 220 >gi|21228787|ref|NP_634709.1| transposase [Methanosarcina mazei Go1] gi|20907304|gb|AAM32381.1| Transposase [Methanosarcina mazei Go1] Length = 195 Score = 41.3 bits (96), Expect = 0.14, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 22/112 (19%) Query: 67 VILVGPSGSGKSCLA---NIWSDKSR--------STRFSNIAKSLDSILID-------TR 108 V+L+GP G GKS LA I + K+ + + +++ Sbjct: 43 VVLLGPPGVGKSHLAIALGIEAVKAGISVYFTNTGNLIERLKLANREGMLEKKLRDLMKY 102 Query: 109 KPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 K +++++I L F++ LF +I+ S ++T+ WG D Sbjct: 103 KVLMIDEIGYLPFDEEGAHCLFQLISR-RYEKCSTILTSNKSYGEWGEIFKD 153 >gi|114331074|ref|YP_747296.1| AAA ATPase [Nitrosomonas eutropha C91] gi|114308088|gb|ABI59331.1| AAA ATPase [Nitrosomonas eutropha C91] Length = 1061 Score = 41.3 bits (96), Expect = 0.14, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 35/83 (42%), Gaps = 8/83 (9%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----LEDID- 117 R+++L+G SG+GK+ L + + + A + I ++ +D Sbjct: 65 SGRIMLLLGESGAGKTHLMRAFRNYTHEKSLGYFAYMQMTSSISNYASYALHYTIDSLDK 124 Query: 118 ---LLDFNDTQLFHIINSIHQYD 137 ++ + T L H+ N++ + Sbjct: 125 PYCAINGSTTGLMHLSNALIERR 147 >gi|328949957|ref|YP_004367292.1| ATP-dependent metalloprotease FtsH [Marinithermus hydrothermalis DSM 14884] gi|328450281|gb|AEB11182.1| ATP-dependent metalloprotease FtsH [Marinithermus hydrothermalis DSM 14884] Length = 630 Score = 40.9 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 23/50 (46%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 R V+LVGP GSGK+ +A + ++R + + + + + Sbjct: 188 RGVLLVGPPGSGKTHIARAVAGEARVPFITASGSDFVEMFVGVGAARVRD 237 >gi|300865058|ref|ZP_07109884.1| putative Superfamily I DNA and RNA helicases and helicase subunits-like [Oscillatoria sp. PCC 6506] gi|300336922|emb|CBN55034.1| putative Superfamily I DNA and RNA helicases and helicase subunits-like [Oscillatoria sp. PCC 6506] Length = 1728 Score = 40.9 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 37/86 (43%), Gaps = 9/86 (10%) Query: 31 SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS 90 + + +DLL+ A E V +++ S P +V++ GP G+GK+ + Sbjct: 580 PLQTTVKLKPEDLLLSGANEDQVAAVEAVLSAPD-LVLIQGPPGTGKT--------TVIA 630 Query: 91 TRFSNIAKSLDSILIDTRKPVLLEDI 116 +A LI ++ + +++ Sbjct: 631 EISYQVALRGGRTLIASQANLAVDNA 656 >gi|298346900|ref|YP_003719587.1| ATP-binding protein [Mobiluncus curtisii ATCC 43063] gi|298236961|gb|ADI68093.1| ATP-binding protein [Mobiluncus curtisii ATCC 43063] Length = 250 Score = 40.9 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 43/111 (38%), Gaps = 24/111 (21%) Query: 67 VILVGPSGSGKSCL-------------------ANIWSDKSRSTRFSNIAKSLDSILIDT 107 +IL+GP G+GK+ L A W ++ T ++ + + Sbjct: 103 IILLGPPGTGKTHLAVSRGMKVIEQNTNVLFNTAQGW-IETLQTAHNHAQLAQALKRLKK 161 Query: 108 RKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 +++++ L + F +I+ ++ SL++T+ WG L Sbjct: 162 YPLLIIDEFGYLPIDADAANLFFQLISDRYEQG-SLIITSNLPFSQWGEIL 211 >gi|303271571|ref|XP_003055147.1| predicted protein [Micromonas pusilla CCMP1545] gi|226463121|gb|EEH60399.1| predicted protein [Micromonas pusilla CCMP1545] Length = 941 Score = 40.9 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 55/160 (34%), Gaps = 34/160 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK----------------P 110 V+L GP G+GK+ LA + ++ F + + + Sbjct: 476 VLLSGPPGTGKTLLARAVAGEAGVPFFYRAGSEFEEMFVGVGSKRVRQLFAAAKKKTPCI 535 Query: 111 VLLEDIDLLDFNDTQ-----------LFHIINSIHQYDSSLLMTARTFPVSWG--VCLPD 157 V +++ID + + L ++ Q + +++ A P + P Sbjct: 536 VFIDEIDAVGTSRKAFETQSRKTLNQLLTEMDGFEQNEGIIVIAATNIPEQLDPALTRPG 595 Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 RL + + PD +++ AD+ + +D + Sbjct: 596 RFDRL-----IHVPNPDIGGRREILRHYLADKPVALDVDV 630 >gi|3426264|gb|AAC32257.1| cell division protein [Mycobacterium smegmatis] Length = 769 Score = 40.9 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 41/269 (15%), Positives = 81/269 (30%), Gaps = 64/269 (23%) Query: 22 KNKEEQLFFSFPRCL---GISRD----------DLLVHSAIEQAVRLIDSWPSWPSRVVI 68 K++ +QL P+ D D L + + QA+ P V+ Sbjct: 147 KSRAKQLSKDMPKTTFADVAGVDEAVEELYEIKDFLQNPSRYQALG-----AKIPKGVL- 200 Query: 69 LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP----------------VL 112 L GP G+GK+ LA + ++ F+ + + + Sbjct: 201 LYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFEQAKQNSPCIIF 260 Query: 113 LEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCLPD 157 +++ID + + L + ++ +L+ A P L Sbjct: 261 VDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGDRQGVILIAATNRPDILDPAL-- 318 Query: 158 LCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR-MERSLVFAE 213 L+ + +S PD V+ + I D L + +R + S Sbjct: 319 ----LRPGRFDRQIPVSNPDLAGRRAVLKVHSQGKPIAPDADL-DGLAKRTVGMSGADLA 373 Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKET 242 + ++ AL + L+E Sbjct: 374 NV---INEAALLTARENGTVITGPALEEA 399 >gi|89100968|ref|ZP_01173813.1| ATPase, AAA family domain protein [Bacillus sp. NRRL B-14911] gi|89084304|gb|EAR63460.1| ATPase, AAA family domain protein [Bacillus sp. NRRL B-14911] Length = 423 Score = 40.9 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 26/177 (14%), Positives = 69/177 (38%), Gaps = 30/177 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKP----VLLEDID 117 +IL GP G GK+ +A+ + ++ +N K ++ + + + +LL+++ Sbjct: 43 MILYGPPGIGKTSIASAIAGSTQFAFRTLNAVTNNKKDMEVVAAEAKMSGKVILLLDEVH 102 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 LD + +L+ T + P + SR + ++ + Sbjct: 103 RLDKAKQDFLLPY---LENGMIVLIGATTSNPYHAIN---PAIRSR---CQIFELKPLSE 153 Query: 176 DFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 + ++K +++ D+ ++ ID+ +++ S ++ ++ LS Sbjct: 154 EDIKKSLLRALQDKENGFGNEKVEIDEDALSHLA---SSSNGDVRSSLNALELAVLS 207 >gi|70991034|ref|XP_750366.1| proteasome regulatory particle subunit Rpt5 [Aspergillus fumigatus Af293] gi|66847998|gb|EAL88328.1| proteasome regulatory particle subunit Rpt5, putative [Aspergillus fumigatus Af293] gi|159130840|gb|EDP55953.1| proteasome regulatory particle subunit Rpt5, putative [Aspergillus fumigatus A1163] Length = 464 Score = 40.9 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 53/160 (33%), Gaps = 38/160 (23%) Query: 70 VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113 GP G+GK+ LA + ++ +T L + I ++ + Sbjct: 250 YGPPGTGKTLLARACAAETNATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPSIIFI 309 Query: 114 EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158 +++D + + ++N D ++ A L L Sbjct: 310 DELDAVGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRIKVLAATNRIDVLDPAL--L 367 Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 S RL ++ LP+++ ++ R++ +D + Sbjct: 368 RSGRLD--RKIEFPLPNEEARANILQ--IHSRKMAVDDAV 403 >gi|325983015|ref|YP_004295417.1| IstB domain-containing protein ATP-binding protein [Nitrosomonas sp. AL212] gi|325532534|gb|ADZ27255.1| IstB domain protein ATP-binding protein [Nitrosomonas sp. AL212] Length = 272 Score = 40.9 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 43/108 (39%), Gaps = 23/108 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKS-----------RSTRFSNIAKSLDSILIDTRKPVLLED 115 ++LVG +G+GK+ LA + +N + S R + L Sbjct: 105 LVLVGGTGTGKTHLAIAIGTLGIQHHNKKVRFFSAIDLANNLEQEKSTGKQGRLALRLLQ 164 Query: 116 IDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 IDL+ ++ LFH+++ +++ +S+++T W Sbjct: 165 IDLVILDELGYLPFSQAGGALLFHLLSRLYER-TSVIITTNLAFAEWS 211 >gi|322689829|ref|YP_004209563.1| zinc metallopeptidase [Bifidobacterium longum subsp. infantis 157F] gi|320461165|dbj|BAJ71785.1| zinc metallopeptidase [Bifidobacterium longum subsp. infantis 157F] Length = 697 Score = 40.9 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 25/62 (40%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 R V+L GP G+GK+ LA + ++ +S + + + + D N Sbjct: 251 RGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEMFVGLGASRVRDLFDEAKKNAP 310 Query: 125 QL 126 + Sbjct: 311 AI 312 >gi|317482115|ref|ZP_07941139.1| ATP-dependent metallopeptidase HflB [Bifidobacterium sp. 12_1_47BFAA] gi|316916474|gb|EFV37872.1| ATP-dependent metallopeptidase HflB [Bifidobacterium sp. 12_1_47BFAA] Length = 697 Score = 40.9 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 25/62 (40%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 R V+L GP G+GK+ LA + ++ +S + + + + D N Sbjct: 251 RGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEMFVGLGASRVRDLFDEAKKNAP 310 Query: 125 QL 126 + Sbjct: 311 AI 312 >gi|303389385|ref|XP_003072925.1| transitional endoplasmic reticulum ATPase [Encephalitozoon intestinalis ATCC 50506] gi|303302068|gb|ADM11565.1| transitional endoplasmic reticulum ATPase [Encephalitozoon intestinalis ATCC 50506] Length = 506 Score = 40.9 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 16/98 (16%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN-------IAKSLDSILIDTRKPVLLED 115 P ++L G SG GK+ L N S + + + +S + + VL+ED Sbjct: 70 PPSTLLLHGVSGVGKTFLVNCISQEYKLPIVKACVDSDKELRESFRKSSLLEKSIVLIED 129 Query: 116 IDLLDFNDTQLF-----HIINSIHQYDSSLLM-TARTF 147 ID L +D ++ ++ N S+++ TAR Sbjct: 130 IDTLGEDDKKVISQLSEYLENY---KGKSIVIATARNP 164 >gi|300814179|ref|ZP_07094462.1| ATP-dependent metallopeptidase HflB [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511836|gb|EFK39053.1| ATP-dependent metallopeptidase HflB [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 651 Score = 40.9 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 38/210 (18%), Positives = 67/210 (31%), Gaps = 69/210 (32%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 +LVGP G+GK+ LA + ++ FS + + Sbjct: 214 ALLVGPPGTGKTLLAKAVASEAEVPFFSISGSEFVEMFVGLGAAKVRDLFKQAEEKAPCI 273 Query: 111 VLLEDIDLLD---------FNDT------QLFHIINSIHQYDSSLLMTARTFPVSW---- 151 + +++ID + ND QL ++ +++ A P S Sbjct: 274 IFIDEIDTIGKKRDGAGFSGNDEREQTLNQLLSEMDGFDAKKGVVILAATNRPDSLDPAL 333 Query: 152 ----------GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 V LPDL R+ I+K+ A++ I D+ Y Sbjct: 334 LRPGRFDRRIPVELPDLAGRI------------------AILKVHAEK-IKKDED-IDY- 372 Query: 202 VQRMERSLVFA--EKLVDKMDNLALSRGMG 229 ++ RS A L + ++ AL Sbjct: 373 -GQVGRSTAGASGADLANMVNEAALRAVRE 401 >gi|300176500|emb|CBK24165.2| unnamed protein product [Blastocystis hominis] Length = 291 Score = 40.9 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 62/151 (41%), Gaps = 28/151 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + ++L GP G+GK+ LA + +S + FS + +L S + + ++ Sbjct: 28 PPKGILLFGPPGTGKTMLAKAVATESNAFFFSVSSSTLTSKWVGESEKIV---------- 77 Query: 123 DTQLFHIINSIHQYDSSLL--------MTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 LF ++ S+L +TAR+ + RLK +V++ Sbjct: 78 -RALF---RVAYRNQPSILFIDEIDSILTARSENENESSR------RLKTEFMVQLDGAS 127 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 E+V++ +R +D + + +R+ Sbjct: 128 TTGEERVLIMGATNRPFELDDAVIRRMARRV 158 >gi|302816732|ref|XP_002990044.1| hypothetical protein SELMODRAFT_130943 [Selaginella moellendorffii] gi|300142164|gb|EFJ08867.1| hypothetical protein SELMODRAFT_130943 [Selaginella moellendorffii] Length = 403 Score = 40.9 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 22/38 (57%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P + V+L GP G+GK+ LA + +SR+ + +L Sbjct: 117 PQKGVLLYGPPGTGKTLLAKAIAKESRAVFINVRIATL 154 >gi|296424347|ref|XP_002841710.1| hypothetical protein [Tuber melanosporum Mel28] gi|295637957|emb|CAZ85901.1| unnamed protein product [Tuber melanosporum] Length = 455 Score = 40.9 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + ++ GP G+GK+ LA + +S++T L + I ++ + Sbjct: 235 PPKGALMYGPPGTGKTLLARACAAQSKATFLKIAGPQLVQMFIGDGAKLVRD 286 >gi|291516359|emb|CBK69975.1| membrane protease FtsH catalytic subunit [Bifidobacterium longum subsp. longum F8] Length = 697 Score = 40.9 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 25/62 (40%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 R V+L GP G+GK+ LA + ++ +S + + + + D N Sbjct: 251 RGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEMFVGLGASRVRDLFDEAKKNAP 310 Query: 125 QL 126 + Sbjct: 311 AI 312 >gi|282882852|ref|ZP_06291457.1| cell division protease FtsH-like protein [Peptoniphilus lacrimalis 315-B] gi|281297263|gb|EFA89754.1| cell division protease FtsH-like protein [Peptoniphilus lacrimalis 315-B] Length = 651 Score = 40.9 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 38/210 (18%), Positives = 67/210 (31%), Gaps = 69/210 (32%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 +LVGP G+GK+ LA + ++ FS + + Sbjct: 214 ALLVGPPGTGKTLLAKAVASEAEVPFFSISGSEFVEMFVGLGAAKVRDLFKQAEEKAPCI 273 Query: 111 VLLEDIDLLD---------FNDT------QLFHIINSIHQYDSSLLMTARTFPVSW---- 151 + +++ID + ND QL ++ +++ A P S Sbjct: 274 IFIDEIDTIGKKRDGAGFSGNDEREQTLNQLLSEMDGFDAKKGVVILAATNRPDSLDPAL 333 Query: 152 ----------GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 V LPDL R+ I+K+ A++ I D+ Y Sbjct: 334 LRPGRFDRRIPVELPDLAGRI------------------AILKVHAEK-IKKDED-IDY- 372 Query: 202 VQRMERSLVFA--EKLVDKMDNLALSRGMG 229 ++ RS A L + ++ AL Sbjct: 373 -GQVGRSTAGASGADLANMVNEAALRAVRE 401 >gi|239621579|ref|ZP_04664610.1| ATP-dependent metalloprotease FtsH [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515454|gb|EEQ55321.1| ATP-dependent metalloprotease FtsH [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 697 Score = 40.9 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 25/62 (40%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 R V+L GP G+GK+ LA + ++ +S + + + + D N Sbjct: 251 RGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEMFVGLGASRVRDLFDEAKKNAP 310 Query: 125 QL 126 + Sbjct: 311 AI 312 >gi|207347038|gb|EDZ73351.1| YDL126Cp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 724 Score = 40.9 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 64/166 (38%), Gaps = 50/166 (30%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R V++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 247 PPRGVLMYGPPGTGKTLMARAVANETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEKN 306 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + +++ID + QL +++ + + +++ A P S Sbjct: 307 APAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNVVVIAATNRPNSIDPA 366 Query: 152 -----------GVCLPDLCSRLKAATVVKIS-----LPDDDFLEKV 181 + +PD RL+ V++I L DD LE + Sbjct: 367 LRRFGRFDREVDIGIPDATGRLE---VLRIHTKNMKLADDVDLEAL 409 Score = 36.7 bits (84), Expect = 2.9, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 16/74 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 PS+ V+ GP G+GK+ LA + + + SNI D Sbjct: 520 PSKGVLFYGPPGTGKTLLAKAVATEVSANFISVKGPELLSMWYGESESNIRDIFDKARAA 579 Query: 107 TRKPVLLEDIDLLD 120 V L+++D + Sbjct: 580 APTVVFLDELDSIA 593 >gi|20043268|gb|AAM09086.1| Tpase2 [Frankia sp. Ar15] Length = 435 Score = 40.9 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 55/144 (38%), Gaps = 31/144 (21%) Query: 30 FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR 89 F+ + RD V + + + + + V+L+GP G GK+ LA K+ Sbjct: 255 FNLDHLPSLRRD---VLAHLATSTYIAKA------GNVVLLGPPGVGKTHLAIGLGVKAT 305 Query: 90 STRFSNI----------------AKSLDSIL--IDTRKPVLLEDIDLLDFNDTQ---LFH 128 +S + A LD L I K ++++++ + F+ F Sbjct: 306 HAGYSVLFDTASNWITRLADAHHAGRLDEELRKIRRYKLIIIDEVGYIPFDQDAANLFFQ 365 Query: 129 IINSIHQYDSSLLMTARTFPVSWG 152 +I + S+L+T+ WG Sbjct: 366 LI-ASRYEQGSVLVTSNLPFGRWG 388 >gi|294625024|ref|ZP_06703674.1| ATPase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294666603|ref|ZP_06731842.1| ATPase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292600699|gb|EFF44786.1| ATPase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603623|gb|EFF47035.1| ATPase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 429 Score = 40.9 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 37/200 (18%), Positives = 65/200 (32%), Gaps = 31/200 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA + + + + F I+ L + + VL E + Sbjct: 34 MILWGPPGCGKTTLALLLAHYADAE-FKAISAVLSG--LPEVRQVLAEAAQRFAGGRRTV 90 Query: 127 F-----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKIS 171 H N Q ++L T L SR + + +S Sbjct: 91 LFVDEVHRFNKAQQDAFLPHIERGTILFVGATTENPSFELNSA---LLSRCRVHVLEGVS 147 Query: 172 LPD--DDFLEKVIVKMFADRQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 D + + A+R + + + I + + A L++ LA Sbjct: 148 PQDIVEALQRAL---RDAERGLGTETIQVSEASLLEIASAADGDVRRALTLLEIAAELAA 204 Query: 225 SRGMGITRSLAAEVLKETQQ 244 G IT +VL + + Sbjct: 205 GEGGEITPQTLLQVLADRTR 224 >gi|253742198|gb|EES99044.1| Katanin [Giardia intestinalis ATCC 50581] Length = 506 Score = 40.9 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 15/40 (37%), Positives = 24/40 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P R V+L GP G+GK+ LA + ++ T F+ A ++S Sbjct: 245 PWRGVLLFGPPGTGKTLLAKAIAMQAGFTFFAASASVIES 284 >gi|167570877|ref|ZP_02363751.1| recombination factor protein RarA [Burkholderia oklahomensis C6786] Length = 436 Score = 40.9 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 61/172 (35%), Gaps = 26/172 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA + + + A I + ++ + T L Sbjct: 50 MILWGPPGVGKTTLARLTALAFDCEFIALSAVLGGVKDIREAMDQARDTLNRTGRH-TIL 108 Query: 127 F----HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 F H N Q +LL + A T S+ V L SR A V + Sbjct: 109 FVDEIHRFNKAQQD--ALLPFVESGLVTFIGATTENPSFEVNSA-LLSR---AQVYVLKS 162 Query: 173 PDDDFLEKVIVKM--FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 +D L +++ + A + + K +V + A + ++ ++ Sbjct: 163 LTEDELRQLLARAQDTALAGLAFEDKAVDTLVGYAD---GDARRFLNLLEQA 211 >gi|154331635|ref|XP_001561635.1| 26S protease regulatory subunit [Leishmania braziliensis MHOM/BR/75/M2904] gi|134058954|emb|CAM36781.1| putative 26S protease regulatory subunit [Leishmania braziliensis MHOM/BR/75/M2904] Length = 396 Score = 40.9 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 22/48 (45%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 V+L GP G+GK+ LA + + +A S+ I V+ E Sbjct: 177 VLLYGPPGTGKTLLAKAIAANVDAAFLKIVASSIVDKYIGESARVIRE 224 >gi|123446639|ref|XP_001312068.1| proteasome endopeptidase complex [Trichomonas vaginalis G3] gi|121893902|gb|EAX99138.1| proteasome endopeptidase complex, putative [Trichomonas vaginalis G3] Length = 391 Score = 40.9 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 15/75 (20%) Query: 63 PSRV-VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 P+ +L GP G+GK+ +A + + + +A SL + ++ E Sbjct: 167 PAPKGALLYGPPGTGKTLIARAIAANTNAKFLKVVAASLFDRYVGESARIVRE------- 219 Query: 122 NDTQLFHIINSIHQY 136 + N Sbjct: 220 -------MFNYARDN 227 >gi|169848944|ref|XP_001831176.1| valosin-containing protein [Coprinopsis cinerea okayama7#130] gi|116507744|gb|EAU90639.1| valosin-containing protein [Coprinopsis cinerea okayama7#130] Length = 816 Score = 40.9 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 26/164 (15%), Positives = 63/164 (38%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 241 PPRGILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 300 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + + ++M A P S Sbjct: 301 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGLKARSNVVVMAATNRPNSIDPA 360 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L R + V I +PD +++ + + + + Sbjct: 361 LR----RFGRFDREVDIGIPDPTGRLEIL--RIHTKNMKLADDV 398 Score = 38.2 bits (88), Expect = 0.99, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G+GK+ LA +++ + S L ++ + + + D Sbjct: 514 PSKGVLFYGPPGTGKTLLAKAIANECNANFISIKGPELLTMWFGESEANVRDVFDKA 570 >gi|91774038|ref|YP_566730.1| AAA ATPase [Methanococcoides burtonii DSM 6242] gi|91713053|gb|ABE52980.1| AAA ATPase [Methanococcoides burtonii DSM 6242] Length = 371 Score = 40.9 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 55/157 (35%), Gaps = 34/157 (21%) Query: 57 DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------- 109 + + W R ++ GPSG+GK+ LA ++K+ A L + Sbjct: 145 EKFGKWAPRNILFFGPSGTGKTMLAKALANKTEVPLLPIKATQLIGEFVGEGSRHIHQLY 204 Query: 110 ---------PVLLEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTF 147 + ++++D + + L ++ I + + A Sbjct: 205 ERAEEMQPCIIFIDELDAIALDRRNQELRGDVAEIVNALLTEMDGIVERRGVCTIAATNR 264 Query: 148 PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 P S P + SR + ++ +LPD+ +I K Sbjct: 265 PNSLD---PAVRSRFEE--EIEFALPDEQNRYLIIEK 296 >gi|46190307|ref|ZP_00206422.1| COG2256: ATPase related to the helicase subunit of the Holliday junction resolvase [Bifidobacterium longum DJO10A] Length = 436 Score = 40.9 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 34/144 (23%), Positives = 56/144 (38%), Gaps = 28/144 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 VIL GP G GK+ LA I + +S ++ K + +L + ++ Sbjct: 40 VILFGPPGVGKTTLATIVAGQSGRVFEELSAVTSGVKDVRDVLTRAHERLV------SRG 93 Query: 122 NDTQLF--HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVK 169 +T LF + +LL + A T S+ + P L SR + VVK Sbjct: 94 QETVLFIDEVHRFSKSQQDALLPAVENRDVTFIGATTENPSFSIIKP-LLSR---SVVVK 149 Query: 170 ISLPD-DDFLEKVIVKMFADRQIF 192 + + D +E V + DR + Sbjct: 150 LESLEPDQLIELVQRALTDDRGLR 173 >gi|320041387|gb|EFW23320.1| ribosome biogenesis ATPase [Coccidioides posadasii str. Silveira] Length = 762 Score = 40.9 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 27/57 (47%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P R V+L GP G GK+ +AN ++ + + A S+ S + + L E D Sbjct: 228 PPRGVLLHGPPGCGKTLIANAFAAELGVPFIAISAPSIVSGMSGESEKALREHFDEA 284 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 23/46 (50%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 V+L GP G GK+ LA +++SR+ S L + + + + Sbjct: 537 VLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAV 582 >gi|319404398|emb|CBI78001.1| ATPase, AAA family [Bartonella rochalimae ATCC BAA-1498] Length = 439 Score = 40.9 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 63/182 (34%), Gaps = 28/182 (15%) Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDID 117 S +I GP G+GK+ +A + + ++ + S I + + +K + Sbjct: 50 ASGSFSSMIFWGPPGTGKTTVARLLALETNFAFEQVSAIFTGISEL----KKIFEVARAR 105 Query: 118 LLDFNDTQLF----HIINS--------IHQYDSSLLM--TARTFPVSWGVCLPDLCSRLK 163 L+ T LF H N + + +L+ T L SR Sbjct: 106 LMSGCQTLLFIDEIHRFNRSQQDSFLPFMEDGTIILVGATTENPSFELNAA---LLSR-- 160 Query: 164 AATVVKISLPDDDFLEKVIVK--MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 A V+ D+ L+ ++ + R + +D +++ + A L + + Sbjct: 161 -ARVLTFRAHDNASLDILLKRAEKVEGRSLPLDDHAREVLIRISDGDARAALTLAEDIWR 219 Query: 222 LA 223 A Sbjct: 220 AA 221 >gi|315924180|ref|ZP_07920406.1| replication-associated recombination protein A [Pseudoramibacter alactolyticus ATCC 23263] gi|315622582|gb|EFV02537.1| replication-associated recombination protein A [Pseudoramibacter alactolyticus ATCC 23263] Length = 449 Score = 40.9 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 50/134 (37%), Gaps = 17/134 (12%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 I GP G+GK+ LA I + ++++ S A + I +++ T L Sbjct: 57 AIFYGPPGTGKTTLAKIIASQTKAAFHSLNAVTSGKKEISEVIAEARQNM-AFYGRKTIL 115 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N + +L+ A T + + L SR +T+ + + Sbjct: 116 FIDEVHRFNKAQQDALLPSVEDGLIILIGATTENPYFEINAA-LISR---STIFEFNPLS 171 Query: 175 DDFLEKVIVKMFAD 188 D +E ++ D Sbjct: 172 DAAIETILKDALTD 185 >gi|313680777|ref|YP_004058516.1| membrane protease ftsh catalytic subunit [Oceanithermus profundus DSM 14977] gi|313153492|gb|ADR37343.1| membrane protease FtsH catalytic subunit [Oceanithermus profundus DSM 14977] Length = 630 Score = 40.9 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 23/50 (46%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 R V+LVGP GSGK+ +A + ++R + + + + + Sbjct: 190 RGVLLVGPPGSGKTHIARAVAGEARVPFITASGSDFVEMFVGVGAARVRD 239 >gi|307596113|ref|YP_003902430.1| AAA family ATPase [Vulcanisaeta distributa DSM 14429] gi|307551314|gb|ADN51379.1| AAA family ATPase, CDC48 subfamily [Vulcanisaeta distributa DSM 14429] Length = 748 Score = 40.9 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 17/114 (14%), Positives = 42/114 (36%), Gaps = 28/114 (24%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P + V+L+GP G+GK+ LA + ++ + S + + + Sbjct: 214 PPKGVLLIGPPGTGKTLLAKAVASEANAYFISINGPEIMSKYYGESEAKLREIFEEAKKN 273 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP 148 + +++ID + QL +++ + + +++ A P Sbjct: 274 APAIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLQERGQVIVIGATNRP 327 Score = 38.2 bits (88), Expect = 0.98, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 19/32 (59%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + ++L GP G+GK+ LA + +S + + Sbjct: 503 PPKGILLFGPPGTGKTLLAKAVATESNANFIA 534 >gi|307111340|gb|EFN59574.1| hypothetical protein CHLNCDRAFT_132927 [Chlorella variabilis] Length = 538 Score = 40.9 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 24/50 (48%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 R V+L GP G+GK+ LA + ++ +T + A + + + + Sbjct: 92 RGVLLCGPPGTGKTLLARAVAGEAGATFIALNASEFVEMFVGVGASRVRD 141 >gi|302807883|ref|XP_002985635.1| hypothetical protein SELMODRAFT_45400 [Selaginella moellendorffii] gi|300146544|gb|EFJ13213.1| hypothetical protein SELMODRAFT_45400 [Selaginella moellendorffii] Length = 342 Score = 40.9 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 30/174 (17%), Positives = 64/174 (36%), Gaps = 36/174 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V+L GP G+GK+ LA + ++R+ + SL S + + ++ Sbjct: 114 PQKGVLLYGPPGTGKTLLAKALAKEARAVFINVQIASLMSKWLGDAQKLVTAVFTLAHKL 173 Query: 113 ------LEDIDLLDFND------------TQLFHIIN--SIHQYDSSLLMTARTFPVSWG 152 ++++D T+ + + + Q L++ A P W Sbjct: 174 QPSIIFIDEVDSFLGRRGVTSHEVMTQMKTEFMALWDGLTTDQNARVLVLAATNRP--WE 231 Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206 + L RL A +I +PD ++ + + ++ D Y+ + Sbjct: 232 LDEAILR-RLPRA--FEIGMPDVKQRASILQVLLKEERVEDDLD-IDYLASLCD 281 >gi|302497219|ref|XP_003010610.1| hypothetical protein ARB_03311 [Arthroderma benhamiae CBS 112371] gi|291174153|gb|EFE29970.1| hypothetical protein ARB_03311 [Arthroderma benhamiae CBS 112371] Length = 908 Score = 40.9 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 26/164 (15%), Positives = 64/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 346 PPRGILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 405 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + + ++M A P S Sbjct: 406 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNIVVMAATNRPNSIDPA 465 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L R + V I +PD +++ + + + + + Sbjct: 466 LR----RFGRFDREVDIGIPDPTGRLEILQ--IHTKNMKLGEDV 503 >gi|283783577|ref|YP_003374331.1| ATP-dependent metallopeptidase HflB [Gardnerella vaginalis 409-05] gi|298252656|ref|ZP_06976450.1| ATP-dependent zinc metallopeptidase involved in cell division [Gardnerella vaginalis 5-1] gi|283441441|gb|ADB13907.1| ATP-dependent metallopeptidase HflB [Gardnerella vaginalis 409-05] gi|297533020|gb|EFH71904.1| ATP-dependent zinc metallopeptidase involved in cell division [Gardnerella vaginalis 5-1] Length = 769 Score = 40.9 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 25/62 (40%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 R V+L GP G+GK+ LA + ++ ++ + + + E D N Sbjct: 261 RGVLLYGPPGTGKTLLARAIAGEAGVPFYAMAGSDFVEMFVGLGASRVRELFDEAKKNAP 320 Query: 125 QL 126 + Sbjct: 321 AI 322 >gi|242310186|ref|ZP_04809341.1| recombination factor protein RarA [Helicobacter pullorum MIT 98-5489] gi|239523483|gb|EEQ63349.1| recombination factor protein RarA [Helicobacter pullorum MIT 98-5489] Length = 388 Score = 40.9 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 71/179 (39%), Gaps = 27/179 (15%) Query: 70 VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI----------DTRKPVLLEDIDLL 119 GP GSGK+ A + +++ ++ A S S + + + ++++ L Sbjct: 44 FGPPGSGKTTAATLIANELGYPFYNLNATSFKSEDLRNILKNHQNTLQKPLIFIDEVHRL 103 Query: 120 DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179 + +L I + +L++ A T + + + SR + V + L + L+ Sbjct: 104 NKAQQELLLPI---MENHQALILGASTENPFFALTNA-IRSR---SFVFEFHLLKQEELK 156 Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238 +++ + + ++ ++ + S A +++ +D ALS ++ L Sbjct: 157 EILKEY------DLKDEIREFL---ISTSGGDARAMLNLLD-CALSSNKPLSIELLKNF 205 >gi|218283933|ref|ZP_03489801.1| hypothetical protein EUBIFOR_02397 [Eubacterium biforme DSM 3989] gi|218215512|gb|EEC89050.1| hypothetical protein EUBIFOR_02397 [Eubacterium biforme DSM 3989] Length = 651 Score = 40.9 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 31/195 (15%), Positives = 67/195 (34%), Gaps = 39/195 (20%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 +++VGP G+GK+ LA + ++ FS + + T Sbjct: 196 ILMVGPPGTGKTLLAKAVAGEANVPFFSISGSDFVEMFVGTGASRVRDMFKTAQKSAPCI 255 Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + + L + ++ + +++ A P L Sbjct: 256 IFIDEIDAVGRQRGAGMGGGNDEREQTLNQLLVEMDGMTDNAGIVVIAATNRPDVLDPAL 315 Query: 156 PDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 L S R V + PD E ++ ++++ D LA + +R A Sbjct: 316 --LRSGRFDRRVTVSL--PDIKGREAILHVHARNKKLASDVSLAN-LAKRTP-GFSGA-D 368 Query: 215 LVDKMDNLALSRGMG 229 L + ++ A+ Sbjct: 369 LANVLNEGAILAVRK 383 >gi|162456465|ref|YP_001618832.1| recombination factor protein RarA [Sorangium cellulosum 'So ce 56'] gi|161167047|emb|CAN98352.1| ATPase [Sorangium cellulosum 'So ce 56'] Length = 460 Score = 40.9 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 28/77 (36%), Gaps = 7/77 (9%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAK-----SLDSILIDTRKPVLLEDIDLL 119 +IL GP G+GK+ LA + + + + A L IL R E + Sbjct: 73 PSMILWGPPGAGKTTLARVVAHTTNARFVPFNAVLGGVPELREILAQARAARSYEGKRTI 132 Query: 120 DFNDTQLFHIINSIHQY 136 F D H N Q Sbjct: 133 LFVDEI--HRFNKAQQD 147 >gi|147673167|ref|YP_001216577.1| recombination factor protein RarA [Vibrio cholerae O395] gi|262170267|ref|ZP_06037954.1| ATPase AAA family [Vibrio cholerae RC27] gi|146315050|gb|ABQ19589.1| conserved hypothetical protein [Vibrio cholerae O395] gi|227012923|gb|ACP09133.1| conserved hypothetical protein [Vibrio cholerae O395] gi|262021282|gb|EEY39996.1| ATPase AAA family [Vibrio cholerae RC27] Length = 449 Score = 40.9 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 65/199 (32%), Gaps = 38/199 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G+GK+ LA + ++ + + A + I E+ L T L Sbjct: 54 MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAREN--KLSGRRTIL 111 Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172 F H N Q D ++ T L SR A V K++ Sbjct: 112 FVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKLTS 165 Query: 173 PDDDFLEKVIVKMFADRQIFID-------KKLAAYIV------QRMERSLVFAEKLVDKM 219 + + + + + AD + + + + RM + + + + Sbjct: 166 LNQQEILQALHQAIADTECGLGKVAAVFADNVLDRLAELVNGDARMSLNYLELLYDMARE 225 Query: 220 DNLALSRGMGITRSLAAEV 238 D+ I L AEV Sbjct: 226 DD---QGRKQIDLPLLAEV 241 >gi|322691768|ref|YP_004221338.1| zinc metallopeptidase [Bifidobacterium longum subsp. longum JCM 1217] gi|320456624|dbj|BAJ67246.1| zinc metallopeptidase [Bifidobacterium longum subsp. longum JCM 1217] Length = 696 Score = 40.9 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 25/62 (40%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 R V+L GP G+GK+ LA + ++ +S + + + + D N Sbjct: 250 RGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEMFVGLGASRVRDLFDEAKKNAP 309 Query: 125 QL 126 + Sbjct: 310 AI 311 >gi|302773239|ref|XP_002970037.1| hypothetical protein SELMODRAFT_146742 [Selaginella moellendorffii] gi|300162548|gb|EFJ29161.1| hypothetical protein SELMODRAFT_146742 [Selaginella moellendorffii] Length = 428 Score = 40.9 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 45/144 (31%), Gaps = 46/144 (31%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P V+ GP G+GK+ LA ++++ + I L + ++ Sbjct: 204 PKGVLC-YGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSK 262 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQYDSS----LLMTARTF--- 147 +++D + + I+N + +D+ +LM Sbjct: 263 KACIVFFDEVDAIGGARFDDGIGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 322 Query: 148 -PVSW---------GVCLPDLCSR 161 P LPDL SR Sbjct: 323 DPALLRPGRLDRKVEFGLPDLDSR 346 >gi|302806994|ref|XP_002985228.1| hypothetical protein SELMODRAFT_181466 [Selaginella moellendorffii] gi|300147056|gb|EFJ13722.1| hypothetical protein SELMODRAFT_181466 [Selaginella moellendorffii] Length = 428 Score = 40.9 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 45/144 (31%), Gaps = 46/144 (31%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P V+ GP G+GK+ LA ++++ + I L + ++ Sbjct: 204 PKGVLC-YGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSK 262 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQYDSS----LLMTARTF--- 147 +++D + + I+N + +D+ +LM Sbjct: 263 KACIVFFDEVDAIGGARFDDGIGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 322 Query: 148 -PVSW---------GVCLPDLCSR 161 P LPDL SR Sbjct: 323 DPALLRPGRLDRKVEFGLPDLDSR 346 >gi|254584118|ref|XP_002497627.1| ZYRO0F09900p [Zygosaccharomyces rouxii] gi|238940520|emb|CAR28694.1| ZYRO0F09900p [Zygosaccharomyces rouxii] Length = 434 Score = 40.9 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 21/45 (46%) Query: 70 VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 GP G+GK+ LA + ++ +T A L + I ++ + Sbjct: 221 YGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMFIGEGAKLVRD 265 >gi|311114326|ref|YP_003985547.1| cell division protein FtsH [Gardnerella vaginalis ATCC 14019] gi|310945820|gb|ADP38524.1| cell division protein FtsH [Gardnerella vaginalis ATCC 14019] Length = 751 Score = 40.9 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 25/62 (40%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 R V+L GP G+GK+ LA + ++ ++ + + + E D N Sbjct: 277 RGVLLYGPPGTGKTLLARAIAGEAGVPFYAMAGSDFVEMFVGLGASRVRELFDEAKKNAP 336 Query: 125 QL 126 + Sbjct: 337 AI 338 >gi|261367566|ref|ZP_05980449.1| ATPase, AAA family [Subdoligranulum variabile DSM 15176] gi|282570353|gb|EFB75888.1| ATPase, AAA family [Subdoligranulum variabile DSM 15176] Length = 420 Score = 40.9 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 36/194 (18%), Positives = 63/194 (32%), Gaps = 27/194 (13%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I GPSG GK+ +A+I + S + + I + +L DI L + Sbjct: 39 PNMIFYGPSGVGKTTVASIIAAGSGMQLHKLNGTTASTSDIKS----VLADIGTLGASGG 94 Query: 125 QLFHI-----INSIHQ-------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 L ++ N Q ++ + A T + L SR TV + Sbjct: 95 ILLYLDEIQYFNKRQQQSLLECVEQGTVTLIASTTENPYFYVYNALLSR---CTVFEFKS 151 Query: 173 PDDDFLEKVIVKMFADRQ------IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 + + K I A I I Y+ Q + A ++ A + Sbjct: 152 LTAEDIRKGIQNAAARLGAEDKVPILIPDDALDYLAQSAGGDMRKALGNLEFAVTAAPAE 211 Query: 227 --GMGITRSLAAEV 238 +T + +V Sbjct: 212 NGQRTVTLDMVQQV 225 >gi|289582097|ref|YP_003480563.1| 26S proteasome subunit P45 family [Natrialba magadii ATCC 43099] gi|289531650|gb|ADD06001.1| 26S proteasome subunit P45 family [Natrialba magadii ATCC 43099] Length = 405 Score = 40.9 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 28/64 (43%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P V+L GP G+GK+ LA ++++ +T L I ++ + + + Sbjct: 182 PPSGVLLYGPPGTGKTMLAKAVANQTNATFIKMAGSELVHKFIGEGAKLVRDLFKVAREH 241 Query: 123 DTQL 126 + + Sbjct: 242 EPAV 245 >gi|183235205|ref|XP_001914172.1| 26S protease regulatory subunit 7 [Entamoeba histolytica HM-1:IMSS] gi|169800682|gb|EDS89052.1| 26S protease regulatory subunit 7, putative [Entamoeba histolytica HM-1:IMSS] Length = 417 Score = 40.9 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 28/57 (49%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P + V+L GP G+GK+ LA ++++ ST I L + ++ + D+ Sbjct: 193 PPKGVLLYGPPGTGKTLLARAVANRTESTFVRVIGSELVQKYVGEGAKMVRDLFDMA 249 >gi|167392334|ref|XP_001740108.1| 26S protease regulatory subunit [Entamoeba dispar SAW760] gi|165895900|gb|EDR23483.1| 26S protease regulatory subunit, putative [Entamoeba dispar SAW760] Length = 417 Score = 40.9 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 28/57 (49%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P + V+L GP G+GK+ LA ++++ ST I L + ++ + D+ Sbjct: 193 PPKGVLLYGPPGTGKTLLARAVANRTESTFVRVIGSELVQKYVGEGAKMVRDLFDMA 249 >gi|156553266|ref|XP_001599519.1| PREDICTED: similar to werner helicase interacting protein [Nasonia vitripennis] Length = 462 Score = 40.9 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 65/175 (37%), Gaps = 36/175 (20%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIA----KSLDSILIDTRKPVLLEDIDLLD 120 +IL GP G GK+ L N+ +S+ + + S + D RK V + Sbjct: 104 PSMILWGPPGCGKTSLVNVIMQESKKLSDIPVKFIKLSATTSSINDVRKAVTEAENQAKQ 163 Query: 121 FNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSR----- 161 T +F H N + + + +L+ T L SR Sbjct: 164 GRRTVVFMDEIHRFNKLQQDIFLPHVEAGTFILIGATTENPSSGLNSA---LLSRCRVFV 220 Query: 162 --------LKAATVVKISLPDDDFLE--KVIVKMFADRQIFIDKKLAAYIVQRME 206 L + + I + D + + ++I K+ +D + F+++K+ ++ + + Sbjct: 221 LKKLQKENLVSILMKAIKMMDGEVVTESEIISKVDSDTKFFVEQKILEWLAEACD 275 >gi|149004095|ref|ZP_01828900.1| putative phage DNA replication protein [Streptococcus pneumoniae SP14-BS69] gi|225857843|ref|YP_002739353.1| gp21 [Streptococcus pneumoniae 70585] gi|303255440|ref|ZP_07341504.1| hypothetical protein CGSSpBS455_08150 [Streptococcus pneumoniae BS455] gi|303259322|ref|ZP_07345300.1| gp21 [Streptococcus pneumoniae SP-BS293] gi|303261078|ref|ZP_07347027.1| gp21 [Streptococcus pneumoniae SP14-BS292] gi|303263406|ref|ZP_07349329.1| gp21 [Streptococcus pneumoniae BS397] gi|303265571|ref|ZP_07351471.1| gp21 [Streptococcus pneumoniae BS457] gi|303267871|ref|ZP_07353673.1| gp21 [Streptococcus pneumoniae BS458] gi|147757907|gb|EDK64916.1| putative phage DNA replication protein [Streptococcus pneumoniae SP14-BS69] gi|225721762|gb|ACO17616.1| gp21 [Streptococcus pneumoniae 70585] gi|302597580|gb|EFL64662.1| hypothetical protein CGSSpBS455_08150 [Streptococcus pneumoniae BS455] gi|302637915|gb|EFL68401.1| gp21 [Streptococcus pneumoniae SP14-BS292] gi|302639740|gb|EFL70197.1| gp21 [Streptococcus pneumoniae SP-BS293] gi|302642567|gb|EFL72912.1| gp21 [Streptococcus pneumoniae BS458] gi|302645011|gb|EFL75258.1| gp21 [Streptococcus pneumoniae BS457] gi|302647179|gb|EFL77403.1| gp21 [Streptococcus pneumoniae BS397] Length = 256 Score = 40.9 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 16/30 (53%) Query: 52 AVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 A R+ W ++L G +G+GKS LA Sbjct: 106 AKRICREWFEGARNNIVLQGEAGTGKSHLA 135 >gi|90413225|ref|ZP_01221220.1| putative ATPase protein [Photobacterium profundum 3TCK] gi|90325777|gb|EAS42235.1| putative ATPase protein [Photobacterium profundum 3TCK] Length = 446 Score = 40.9 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 45/199 (22%), Positives = 72/199 (36%), Gaps = 38/199 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G+GK+ LA + ++ + + R S + + I I K + + T Sbjct: 52 MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKDIRIAIDKA----RENKMAGRRT 107 Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSR-----LKAA 165 LF H N Q D ++ T L SR LK+ Sbjct: 108 ILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSRARVYKLKSL 164 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV------QRMERSLVFAEKLVDKM 219 V++ D L+ + +D + + + RM SL + E+L+D M Sbjct: 165 ETVEVLAVVDQALKDS-SRGISDTNLEFVDDVKERLSELVCGDARM--SLNYLEQLID-M 220 Query: 220 DNLALSRGMGITRSLAAEV 238 + IT L AEV Sbjct: 221 AEENKAGIKQITLELLAEV 239 >gi|89901945|ref|YP_524416.1| recombination factor protein RarA [Rhodoferax ferrireducens T118] gi|89346682|gb|ABD70885.1| Recombination protein MgsA [Rhodoferax ferrireducens T118] Length = 435 Score = 40.9 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 34/192 (17%), Positives = 68/192 (35%), Gaps = 22/192 (11%) Query: 68 ILVGPSGSGKSCLANIWSDKSRSTRF-------------SNIAKSLDSILIDTRKPVLLE 114 IL GP G+GK+ +A + +D + + ++ + R V ++ Sbjct: 53 ILWGPPGTGKTTIARLMADAFDAQFITISAVLGGVKDIREAVEQAQVAQGQGRRTIVFVD 112 Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 ++ + + F + + A T S+ V L SR A V + Sbjct: 113 EVHRFNKSQQDAFLAH---VESGLFTFIGATTENPSFEVNSA-LLSR---AAVYVLQPLA 165 Query: 175 DDFLEKVIVKMFADRQIFIDKKLA-AYIVQRMERSLVFAEKLVDKMDNLALSRG-MGITR 232 LE++I + A + + +K+A +V + ++ + A IT Sbjct: 166 PQDLEQIIARALALQALPAIEKIASERLVGFADGDARRLLNTLEMLSVAATQERVSEITD 225 Query: 233 SLAAEVLKETQQ 244 +VL E + Sbjct: 226 PWLQKVLGERMR 237 >gi|67479697|ref|XP_655230.1| 26s protease regulatory subunit [Entamoeba histolytica HM-1:IMSS] gi|56472352|gb|EAL49843.1| 26s protease regulatory subunit [Entamoeba histolytica HM-1:IMSS] Length = 417 Score = 40.9 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 28/57 (49%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P + V+L GP G+GK+ LA ++++ ST I L + ++ + D+ Sbjct: 193 PPKGVLLYGPPGTGKTLLARAVANRTESTFVRVIGSELVQKYVGEGAKMVRDLFDMA 249 >gi|297243774|ref|ZP_06927704.1| ATP-dependent zinc metallopeptidase involved in cell division [Gardnerella vaginalis AMD] gi|296888195|gb|EFH26937.1| ATP-dependent zinc metallopeptidase involved in cell division [Gardnerella vaginalis AMD] Length = 769 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 25/62 (40%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 R V+L GP G+GK+ LA + ++ ++ + + + E D N Sbjct: 261 RGVLLYGPPGTGKTLLARAIAGEAGVPFYAMAGSDFVEMFVGLGASRVRELFDEAKKNAP 320 Query: 125 QL 126 + Sbjct: 321 AI 322 >gi|207724063|ref|YP_002254461.1| transposase and helper protein [Ralstonia solanacearum MolK2] gi|206589272|emb|CAQ36234.1| probable transposase and helper protein [Ralstonia solanacearum MolK2] Length = 578 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 47/130 (36%), Gaps = 30/130 (23%) Query: 51 QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110 ++ I+ + V+L+GPSG GK+ +A+ + ++ + +++ Sbjct: 409 ASLAFIERAEN-----VVLLGPSGVGKTHIASALAYRATQAGIKTRFITAADLMMQLATA 463 Query: 111 -------------------VLLEDIDLLDF--NDTQLFHIINSI--HQYDSSLLMTARTF 147 +++++I L F + LF N + ++++T+ Sbjct: 464 RQQNRLREFFNRAVIGPRLLVIDEIGYLPFGREEADLF--FNVVAKRYERGAIVLTSNLP 521 Query: 148 PVSWGVCLPD 157 W D Sbjct: 522 FTQWATAFAD 531 >gi|164662603|ref|XP_001732423.1| hypothetical protein MGL_0198 [Malassezia globosa CBS 7966] gi|159106326|gb|EDP45209.1| hypothetical protein MGL_0198 [Malassezia globosa CBS 7966] Length = 778 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 64/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R V++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 192 PPRGVLMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 251 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + + ++M A P S Sbjct: 252 SPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGLKARSNIVVMAATNRPNSIDPA 311 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L R + V I +PD +++ + + + + + Sbjct: 312 LR----RFGRFDREVDIGIPDPTGRLEIL--RIHTKNMKLAEDV 349 Score = 38.2 bits (88), Expect = 0.91, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G+GK+ LA + + ++ S L ++ + + + D Sbjct: 465 PSKGVLFYGPPGTGKTLLAKAIAHECQANFISIKGPELLTMWFGESEANVRDVFDKA 521 >gi|154287624|ref|XP_001544607.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] gi|150408248|gb|EDN03789.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] Length = 547 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 71/198 (35%), Gaps = 34/198 (17%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSN-------------IAKSLDSILIDTRKPV 111 +IL G +G+GK+ +A + + S A++ + + + RK + Sbjct: 165 PSMILWGGAGTGKTTIARVIAKMVGSRFVEINSTNSGVAECKKLFAEAKNELSLSGRKTI 224 Query: 112 LL-EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 + ++I + +F + L+ A T S+ V L SR + Sbjct: 225 IFCDEIHRFSKSQQDVFL---GPVESGQITLIGATTENPSFKVQNA-LLSR---CRTFTL 277 Query: 171 SLPDDDFLEKVIVKMFADRQIF------IDKKLAAYIVQRMERSLVFAEKLVD-KMD--- 220 + D+ + ++ + +D +L Y+ + + L++ MD Sbjct: 278 AKLTDEDIVSILNRALKVEGPNYSPSPLVDDELIKYLAAFADGDARTSLNLLELAMDLSR 337 Query: 221 NLALSR---GMGITRSLA 235 ++R +TR+L Sbjct: 338 REGMTREDLKKSLTRTLV 355 >gi|19112067|ref|NP_595275.1| AAA family ATPase, unknown biological role [Schizosaccharomyces pombe 972h-] gi|74675997|sp|O43078|SUR2_SCHPO RecName: Full=Protein sur2 gi|2894288|emb|CAA17029.1| AAA family ATPase, unknown biological role [Schizosaccharomyces pombe] Length = 660 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 30/50 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P + ++L GP G+GK+ LA + ++++T FS A SL S + + ++ Sbjct: 411 PVQGMLLFGPPGTGKTMLARAVATEAKATFFSISASSLTSKYLGDSEKLV 460 >gi|50915051|ref|YP_061023.1| recombination factor protein RarA [Streptococcus pyogenes MGAS10394] gi|50904125|gb|AAT87840.1| ATPase, AAA family [Streptococcus pyogenes MGAS10394] Length = 422 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 28/176 (15%), Positives = 60/176 (34%), Gaps = 25/176 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST---------RFSNIAKSLDSILIDTRKPVLLEDID 117 +IL GP G GK+ +A+ + +R + + + +LL++I Sbjct: 42 MILYGPPGIGKTSIASAIAGTTRYAFRTFNATIDSKKRLQEITEEAKFSGGLVLLLDEIH 101 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 LD + +++M T + P + SR + ++ ++ Sbjct: 102 RLDKTKQDFL----LPLLENGTIIMIGATTENPFFSVTPAIRSR---VQIFELEPLSNED 154 Query: 178 LEKVIVKMFAD--RQ----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 ++ I +D R + ID + +IV + +D +S Sbjct: 155 IKTAIQLAISDKERGFPFLVTIDDEALDFIVTATN---GDLRSAYNSLDLAVMSTK 207 >gi|296454756|ref|YP_003661899.1| ATP-dependent metalloprotease FtsH [Bifidobacterium longum subsp. longum JDM301] gi|296184187|gb|ADH01069.1| ATP-dependent metalloprotease FtsH [Bifidobacterium longum subsp. longum JDM301] Length = 697 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 25/62 (40%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 R V+L GP G+GK+ LA + ++ +S + + + + D N Sbjct: 251 RGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEMFVGLGASRVRDLFDEAKKNAP 310 Query: 125 QL 126 + Sbjct: 311 AI 312 >gi|227546578|ref|ZP_03976627.1| M41 family endopeptidase FtsH [Bifidobacterium longum subsp. infantis ATCC 55813] gi|312133974|ref|YP_004001313.1| hflb [Bifidobacterium longum subsp. longum BBMN68] gi|227212895|gb|EEI80774.1| M41 family endopeptidase FtsH [Bifidobacterium longum subsp. infantis ATCC 55813] gi|311773273|gb|ADQ02761.1| HflB [Bifidobacterium longum subsp. longum BBMN68] Length = 696 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 25/62 (40%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 R V+L GP G+GK+ LA + ++ +S + + + + D N Sbjct: 250 RGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEMFVGLGASRVRDLFDEAKKNAP 309 Query: 125 QL 126 + Sbjct: 310 AI 311 >gi|195122172|ref|XP_002005586.1| GI18990 [Drosophila mojavensis] gi|193910654|gb|EDW09521.1| GI18990 [Drosophila mojavensis] Length = 752 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 21/43 (48%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109 V+LVGP G+GK+ LA + ++ F D +L+ Sbjct: 353 VLLVGPPGTGKTLLARAVAGEANVPFFHAAGPEFDEVLVGQGA 395 >gi|167624139|ref|YP_001674433.1| recombination factor protein RarA [Shewanella halifaxensis HAW-EB4] gi|167354161|gb|ABZ76774.1| AAA ATPase central domain protein [Shewanella halifaxensis HAW-EB4] Length = 443 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 72/193 (37%), Gaps = 29/193 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 ++ GP G+GK+ LA + + + + R S + + I +++ T Sbjct: 52 MMFWGPPGTGKTTLAELVAHYANAHVERISAVTSGVKEIRSAIEHA---KNVAQSRGQRT 108 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + + + + A T S+ + L SR A V I Sbjct: 109 LLFVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEINNA-LLSR---ARVYLIKQ 164 Query: 173 PDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 + + + +++ + D R++ + ++ + Q + A L++ M ++ L Sbjct: 165 LEPEEIGQIVQQALEDEERGLGKRKLLLPADVSLKLAQTCDGDARKALNLIELMSDM-LK 223 Query: 226 RGMGITRSLAAEV 238 G T + V Sbjct: 224 DGEAFTEEMIIAV 236 >gi|167536672|ref|XP_001750007.1| hypothetical protein [Monosiga brevicollis MX1] gi|163771517|gb|EDQ85182.1| predicted protein [Monosiga brevicollis MX1] Length = 3427 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 58/160 (36%), Gaps = 22/160 (13%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL-----LEDID 117 P RV++LV P G+GKS AN S S D +++++ +L +E+ Sbjct: 2763 PRRVMLLVSPPGAGKSHTANEIMRDSGEIICHRFDCSDDRLVMNSLSSLLATYFSVENRP 2822 Query: 118 LLDFNDTQLFH---------IINSI--HQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 L D FH + N I ++L+ L DL +++ Sbjct: 2823 SLLVADE--FHLLGLRHKRELFNWITPRLSWLNVLLIGNRKLRQDSGLLDDLRRHVQSTG 2880 Query: 167 V----VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 VKI + IV+ D I L +++ Sbjct: 2881 CTKDDVKIEEMEVQLDPNFIVQNCHDNANGIKDDLTRWLI 2920 >gi|159466984|ref|XP_001691678.1| 26S proteasome regulatory subunit [Chlamydomonas reinhardtii] gi|158279024|gb|EDP04786.1| 26S proteasome regulatory subunit [Chlamydomonas reinhardtii] Length = 399 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + + ++ ++ I ++ E Sbjct: 169 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIVDKYIGESARIIRE 220 >gi|113473936|ref|YP_718199.1| IstB-like ATP-biding protein [Sphingomonas sp. KA1] gi|112821616|dbj|BAF03487.1| IstB-like ATP-biding protein [Sphingomonas sp. KA1] Length = 236 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 47/109 (43%), Gaps = 22/109 (20%) Query: 65 RVVILVGPSGSGKSCLA-NIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------LE 114 R ++LVG +G+GK+ LA I + R+ ++D + + L L Sbjct: 93 RNIVLVGGTGTGKTHLALAITAAVVRAGTRGRYFNTVDLVNRLEEEARLGKAGSLAAQLS 152 Query: 115 DIDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 +DL+ ++ LFH+I+ +++ +S+++T W Sbjct: 153 RLDLVVLDELGYLPFARSGGQMLFHLISKLYE-KTSVIITTNLAFGEWP 200 >gi|85372702|gb|ABC70156.1| AAA-type ATPase [uncultured prokaryote 2E01B] Length = 725 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 48/156 (30%), Gaps = 34/156 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI----------------D 106 P V+L GP G+GK+ LA + +S L + Sbjct: 503 PPTGVLLHGPPGTGKTLLARAIAGESEVNFIQVAGPELLDRYVGESEKAVREVFERARQA 562 Query: 107 TRKPVLLEDIDLLDFNDT-------------QLFHIINSIHQYDSSLLMTARTFPVSWGV 153 V ++ID + + QL + + ++ A S Sbjct: 563 APSIVFFDEIDAIAGDREFGGDSAVGERVVSQLLTEFDRAADDPNLAVLAATNRKESLDD 622 Query: 154 CLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFAD 188 L L RL+ V++ PD+ E ++ D Sbjct: 623 AL--LRPGRLE--QHVEVPRPDESAREAILAVHTTD 654 >gi|23336233|ref|ZP_00121458.1| COG0465: ATP-dependent Zn proteases [Bifidobacterium longum DJO10A] gi|189440710|ref|YP_001955791.1| ATP-dependent Zn protease [Bifidobacterium longum DJO10A] gi|189429145|gb|ACD99293.1| ATP-dependent Zn protease [Bifidobacterium longum DJO10A] Length = 697 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 25/62 (40%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 R V+L GP G+GK+ LA + ++ +S + + + + D N Sbjct: 251 RGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEMFVGLGASRVRDLFDEAKKNAP 310 Query: 125 QL 126 + Sbjct: 311 AI 312 >gi|328793565|ref|XP_392703.4| PREDICTED: ATP-dependent zinc metalloprotease YME1 homolog isoform 1 [Apis mellifera] Length = 734 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 21/43 (48%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109 V+LVGP G+GK+ LA + ++ F + IL+ Sbjct: 317 VLLVGPPGTGKTLLARAVAGEAGVPFFHAAGPEFEEILVGQGA 359 >gi|306840328|ref|ZP_07473100.1| recombination factor protein RarA [Brucella sp. BO2] gi|306289727|gb|EFM60916.1| recombination factor protein RarA [Brucella sp. BO2] Length = 437 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 28/182 (15%), Positives = 60/182 (32%), Gaps = 28/182 (15%) Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDID 117 S +I GP G+GK+ +A + + ++ + S I + + Sbjct: 49 ASGSLGSMIFWGPPGTGKTTVARLLAGETDLAFEQISAIFSGVADLKRVFEAA----RAR 104 Query: 118 LLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLK 163 + T LF H N + + +L+ T L SR Sbjct: 105 RMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVILIGATTENPSFELNAA---LLSR-- 159 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 A V+ D + + ++ + + +D + A +++ + A L +++ Sbjct: 160 -ARVLTFHPHDSESIATLLKRAEEQEGQALPLDDEARASLIRMADGDGRAALTLAEEVWR 218 Query: 222 LA 223 A Sbjct: 219 AA 220 >gi|266624899|ref|ZP_06117834.1| replication-associated recombination protein A [Clostridium hathewayi DSM 13479] gi|288863218|gb|EFC95516.1| replication-associated recombination protein A [Clostridium hathewayi DSM 13479] Length = 440 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 64/177 (36%), Gaps = 29/177 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS-------------TRFSNIAKSLDSILIDTRKPVLL 113 +I GP G GK+ LA I ++++++ +A++ + R V + Sbjct: 53 MIFWGPPGVGKTTLARIIANRTKASFVDFSAVTSGIKEIKEVMAQAERDRHMGLRTLVFV 112 Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 ++I + F + S +L+ A T S+ + L SR V + Sbjct: 113 DEIHRFNKAQQDAFLPY---VEKGSIILIGATTENPSFEINAA-LLSR---CKVFVLQAL 165 Query: 174 DDDFLEKVIVKMFA------DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 D L ++ D++I I + + I Q A ++ ++ L Sbjct: 166 QTDDLVILLHHALTSPLGLGDQRIGITEDMLRMIAQFAN---GDARTALNTLEMAVL 219 >gi|84997105|ref|XP_953274.1| replication factor C [Theileria annulata strain Ankara] gi|65304270|emb|CAI76649.1| replication factor C, putative [Theileria annulata] Length = 840 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 43/111 (38%), Gaps = 27/111 (24%) Query: 40 RDDLLVHSA-IEQAVRLIDSWP---------SWPSRVVILVG-PSGSGKSCLANIWSD-- 86 DLL +++R + SW P ++L+G P G GK+CL N+ + Sbjct: 222 FSDLLTSENVNLESLRWLSSWKCSSNYLDKYEEPEHRILLIGGPPGVGKTCLVNVIAKHC 281 Query: 87 --------------KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123 K R N S S++ + LLED+D L ++ Sbjct: 282 GYNVVEINSSDDRTKGRVIPIINGVVSAGSVIPNKPNLCLLEDVDTLFGSE 332 >gi|332025898|gb|EGI66054.1| ATPase WRNIP1 [Acromyrmex echinatior] Length = 552 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 61/161 (37%), Gaps = 29/161 (18%) Query: 65 RVVILVGPSGSGKSCLANIWS-----DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 +IL GP G GK+ LAN+ + D SR R+ ++ ++ + + ++ + + Sbjct: 140 PNMILWGPPGCGKTSLANVIAHMCKNDASRKLRYVKLSAAMAGV-QEVKEVISIASNHAK 198 Query: 120 DFNDTQLF----HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 T +F H N + Q V LP + S + P Sbjct: 199 YAQHTIVFMDEIHRFNKMQQD----------------VFLPHVESGIITLIGATTENPSF 242 Query: 176 DFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216 ++ + R I + K A ++ ++R+++ ++ Sbjct: 243 SLNSALLSRC---RVIVLHKLSIANLLLILKRAVISLGGII 280 >gi|332188627|ref|ZP_08390344.1| istB-like ATP binding family protein [Sphingomonas sp. S17] gi|332188922|ref|ZP_08390624.1| istB-like ATP binding family protein [Sphingomonas sp. S17] gi|332011047|gb|EGI53150.1| istB-like ATP binding family protein [Sphingomonas sp. S17] gi|332011352|gb|EGI53440.1| istB-like ATP binding family protein [Sphingomonas sp. S17] Length = 175 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 49/114 (42%), Gaps = 22/114 (19%) Query: 65 RVVILVGPSGSGKSCLA-----NIWSDKSRSTRFS--NIAKSLDSILIDTRK---PVLLE 114 R V+LVG +G+GK+ LA N+ +R F+ ++ L+ + L Sbjct: 32 RNVVLVGGTGTGKTHLATAITTNVVRAGARGRYFNTVDLVNRLEEETRLGKAGTLAAQLS 91 Query: 115 DIDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 +DL+ ++ LFH+++ +++ +S+++T W D Sbjct: 92 RLDLVVLDELGYLPFARSGGQLLFHLVSKLYE-QTSVIVTTNLAFGEWPTVFGD 144 >gi|321461635|gb|EFX72665.1| hypothetical protein DAPPUDRAFT_308117 [Daphnia pulex] Length = 389 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + + ++ ++ I ++ E Sbjct: 166 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 217 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 218 ------MFNYARDHQ 226 >gi|320580528|gb|EFW94750.1| AAA family ATPase [Pichia angusta DL-1] Length = 832 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 65/166 (39%), Gaps = 50/166 (30%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + +++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 247 PPKGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 306 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + + +++ID + QL +++ + + +++ A P S Sbjct: 307 SPSIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNVVVIAATNRPNSIDPA 366 Query: 152 -----------GVCLPDLCSRLKAATVVKIS-----LPDDDFLEKV 181 + +PD RL+ V++I L DD LE + Sbjct: 367 LRRFGRFDREVDIGIPDAAGRLE---VLRIHTKNMKLADDVDLEAL 409 >gi|302884376|ref|XP_003041084.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256721980|gb|EEU35371.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 459 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 54/160 (33%), Gaps = 38/160 (23%) Query: 70 VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113 GP G+GK+ LA + ++ +T L + I ++ + Sbjct: 246 YGPPGTGKTLLARACAAQTDATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPAIIFI 305 Query: 114 EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158 +++D + + ++N D ++ A L L Sbjct: 306 DELDAVGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRIKVLAATNRVDVLDPAL--L 363 Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 S RL ++ LP+++ +++ R++ +D + Sbjct: 364 RSGRLD--RKIEFPLPNEEARAQIL--KIHSRKMKVDPGV 399 >gi|302520664|ref|ZP_07273006.1| ATP-binding protein [Streptomyces sp. SPB78] gi|302429559|gb|EFL01375.1| ATP-binding protein [Streptomyces sp. SPB78] Length = 491 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 35/199 (17%), Positives = 59/199 (29%), Gaps = 42/199 (21%) Query: 7 DYSFFVPDKQKNDQPKNKEEQLF--FSFPRCLGISRD--------DLLVHSAIEQAVRLI 56 ++ PD ++ + QL P + + AV + Sbjct: 123 GWTITTPDPREVCWRRT---QLIGELPMPARETNGKGIDLLLRLTNFASADTESLAVAWL 179 Query: 57 --DSWPSWPSRVVILVGPSGSGKSC----LANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110 PS P L GP G+GKS L I + R + + + Sbjct: 180 IGCLEPSVPVPAPFLTGPQGAGKSTAGRMLVRIVEGMTGDLRRAPKDEENLITAVAAGWV 239 Query: 111 VLLEDIDLLDFN---------------DTQLFHIINSIHQY-DSSLLMTARTFPVSWGVC 154 L+++ L + LF + + LL+T + GV Sbjct: 240 TALDNLSHLAPDLSDLMCCIVTGAESIKRALFSDGDVVRSRYRRPLLLTG----IDVGVI 295 Query: 155 LPDLCSRLKAATVVKISLP 173 PDL RL +++ P Sbjct: 296 RPDLAERL---LTLRLERP 311 >gi|240276219|gb|EER39731.1| DNA replication ATPase [Ajellomyces capsulatus H143] Length = 547 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 44/265 (16%), Positives = 93/265 (35%), Gaps = 46/265 (17%) Query: 2 NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDL----LVHSAIEQAVRLID 57 N +ED S V + ++ +N + S DD+ LV + LI+ Sbjct: 106 NFSEEDSSRLVKRSRTSNALENAA---PLAERMRPR-SLDDVYGQELVGPS-GVLRGLIE 160 Query: 58 SWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN-------------IAKSLDSIL 104 +IL G +G+GK+ +A + + S +++ + + Sbjct: 161 QDR---VPSMILWGGAGTGKTTIARVIAKMVGSRFVEINSTNSGVAECKKLFSEAKNELS 217 Query: 105 IDTRKPVLL-EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK 163 + RK ++ ++I + +F + L+ A T S+ V L SR Sbjct: 218 LSGRKTIIFCDEIHRFSKSQQDVFL---GPVESGQITLIGATTENPSFKVQNA-LLSR-- 271 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIF------IDKKLAAYIVQRMERSLVFAEKLVD 217 ++ D+ + ++ + +D +L Y+ + + L++ Sbjct: 272 -CRTFTLAKLTDEDIVSILNRALKVEGPNYSPSPLVDDELIKYLAAFADGDARTSLNLLE 330 Query: 218 -KMD---NLALSR---GMGITRSLA 235 MD ++R +TR+L Sbjct: 331 LAMDLSRREGMTREDLKKSLTRTLV 355 >gi|158302095|ref|XP_321726.4| AGAP001407-PA [Anopheles gambiae str. PEST] gi|157012786|gb|EAA01092.4| AGAP001407-PA [Anopheles gambiae str. PEST] Length = 397 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + + ++ ++ I ++ E Sbjct: 174 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 225 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 226 ------MFNYARDHQ 234 >gi|47086195|ref|NP_998085.1| ATPase WRNIP1 [Danio rerio] gi|45709587|gb|AAH67729.1| Zgc:85976 [Danio rerio] Length = 546 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 7/79 (8%) Query: 65 RVVILVGPSGSGKSCLANIWSD---KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 +IL GP G GK+ LA+I + + + RF ++ + S+ ++ L Sbjct: 152 PSLILWGPPGCGKTTLAHIIASSIKQKGTGRFVTLSATSASVSDVREVIKQAQNELRLCK 211 Query: 122 NDTQLF----HIINSIHQY 136 T LF H N Q Sbjct: 212 RKTVLFIDEIHRFNKSQQD 230 >gi|2960216|emb|CAA11285.1| 26S proteasome regulatory ATPase subunit 10b (S10b) [Manduca sexta] Length = 396 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + + ++ ++ I ++ E Sbjct: 173 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 224 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 225 ------MFNYARDHQ 233 >gi|23466230|ref|NP_696833.1| ATP-dependent zinc metallopeptidase involved in cell division [Bifidobacterium longum NCC2705] gi|23326975|gb|AAN25469.1| ATP-dependent zinc metallopeptidase involved in cell division [Bifidobacterium longum NCC2705] Length = 696 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 25/62 (40%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 R V+L GP G+GK+ LA + ++ +S + + + + D N Sbjct: 250 RGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEMFVGLGASRVRDLFDEAKKNAP 309 Query: 125 QL 126 + Sbjct: 310 AI 311 >gi|325981032|ref|YP_004293434.1| IstB domain-containing protein ATP-binding protein [Nitrosomonas sp. AL212] gi|325530551|gb|ADZ25272.1| IstB domain protein ATP-binding protein [Nitrosomonas sp. AL212] Length = 767 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 43/108 (39%), Gaps = 23/108 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKS-----------RSTRFSNIAKSLDSILIDTRKPVLLED 115 ++LVG +G+GK+ LA + +N + S R + L Sbjct: 600 LVLVGGTGTGKTHLAIAIGTLGIQHHNKKVRFFSAIDLANNLEQEKSTGKQGRLALRLLQ 659 Query: 116 IDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 IDL+ ++ LFH+++ +++ +S+++T W Sbjct: 660 IDLVILDELGYLPFSQAGGALLFHLLSRLYER-TSVIITTNLAFAEWS 706 >gi|325182391|emb|CCA16844.1| cell division cycle protein 48 putative [Albugo laibachii Nc14] Length = 854 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 13/32 (40%), Positives = 19/32 (59%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 PS ++L GPSG GKS LA + + ++ S Sbjct: 611 PSSGILLYGPSGCGKSLLAKVLAARANVNFVS 642 >gi|302131225|ref|ZP_07257215.1| transposase/IS protein [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 269 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 41/114 (35%), Gaps = 25/114 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID-------------------T 107 ++ +GPSG GKS LA + ++ + +++ Sbjct: 104 IVFLGPSGVGKSHLAIALAYRAVMAGIKTRFVTAADLMLQLTAAHRQERLKEYFSRVVMA 163 Query: 108 RKPVLLEDIDLLDF--NDTQLFHIINSI--HQYDSSLLMTARTFPVSWGVCLPD 157 +++++I L F ++ LF N + SL++T+ W D Sbjct: 164 PGLLVIDEIGYLPFCRDEANLF--FNVVAKRYEQGSLILTSNLPFTQWAGTFAD 215 >gi|291516212|emb|CBK69828.1| Recombination protein MgsA [Bifidobacterium longum subsp. longum F8] Length = 444 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 34/144 (23%), Positives = 56/144 (38%), Gaps = 28/144 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 VIL GP G GK+ LA I + +S ++ K + +L + ++ Sbjct: 48 VILFGPPGVGKTTLATIVAGQSGRVFEELSAVTSGVKDVRDVLTRAHERLV------SRG 101 Query: 122 NDTQLF--HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVK 169 +T LF + +LL + A T S+ + P L SR + VVK Sbjct: 102 QETVLFIDEVHRFSKSQQDALLPAVENRDVTFIGATTENPSFSIIKP-LLSR---SVVVK 157 Query: 170 ISLPD-DDFLEKVIVKMFADRQIF 192 + + D +E V + DR + Sbjct: 158 LESLEPDQLIELVQRALTDDRGLR 181 >gi|262200380|ref|YP_003271588.1| IstB domain-containing protein ATP-binding protein [Gordonia bronchialis DSM 43247] gi|262201283|ref|YP_003272491.1| IstB domain-containing protein ATP-binding protein [Gordonia bronchialis DSM 43247] gi|262201832|ref|YP_003273040.1| IstB domain-containing protein ATP-binding protein [Gordonia bronchialis DSM 43247] gi|262204082|ref|YP_003275290.1| IstB domain-containing protein ATP-binding protein [Gordonia bronchialis DSM 43247] gi|262083727|gb|ACY19695.1| IstB domain protein ATP-binding protein [Gordonia bronchialis DSM 43247] gi|262084630|gb|ACY20598.1| IstB domain protein ATP-binding protein [Gordonia bronchialis DSM 43247] gi|262085179|gb|ACY21147.1| IstB domain protein ATP-binding protein [Gordonia bronchialis DSM 43247] gi|262087429|gb|ACY23397.1| IstB domain protein ATP-binding protein [Gordonia bronchialis DSM 43247] Length = 253 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 43/122 (35%), Gaps = 26/122 (21%) Query: 51 QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR-----------STRFSNIAKS 99 A+R +D+ VIL GP G GK+ +A + + +++A Sbjct: 93 AALRWLDA-----GESVILYGPVGVGKTHVAQALGHQVALRGHDIRFVKCARMLADLAGG 147 Query: 100 LDSILIDTR-------KPVLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPV 149 I R ++++D + L+ +++ +++T+ P Sbjct: 148 HADRTIGQRMREYTRPAVLIIDDFAMREHTTTGSDDLYDLVSDRAIAAKPVILTSNRAPK 207 Query: 150 SW 151 W Sbjct: 208 DW 209 >gi|213691454|ref|YP_002322040.1| ATP-dependent metalloprotease FtsH [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213522915|gb|ACJ51662.1| ATP-dependent metalloprotease FtsH [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457526|dbj|BAJ68147.1| zinc metallopeptidase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 697 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 25/62 (40%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 R V+L GP G+GK+ LA + ++ +S + + + + D N Sbjct: 251 RGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEMFVGLGASRVRDLFDEAKKNAP 310 Query: 125 QL 126 + Sbjct: 311 AI 312 >gi|209882419|ref|XP_002142646.1| 26S proteasome regulatory subunit 7 [Cryptosporidium muris RN66] gi|209558252|gb|EEA08297.1| 26S proteasome regulatory subunit 7, putative [Cryptosporidium muris RN66] Length = 431 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 24/170 (14%), Positives = 56/170 (32%), Gaps = 46/170 (27%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V+L GP G+GK+ A ++++ + I L + ++ Sbjct: 206 PPKGVLLYGPPGTGKTLTARAVANRTDACFICVIGSELVQKYVGEGARMVRELFRLARSK 265 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQYDSS----LLMTARTF--- 147 ++++D + + I+N + +D+ +LM Sbjct: 266 KACILFIDEVDAIGGARGEESAHGDHEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 325 Query: 148 -PVSW---------GVCLPDLCSRLK-AATVVKISLPDDDFLEKVIVKMF 186 P LPDL R + ++ + D +++ ++ Sbjct: 326 DPALLRPGRLDRKVEFSLPDLEGRTQIFMIHARVMNMERDIRFELLARLC 375 >gi|163790370|ref|ZP_02184802.1| ATPase, AAA family protein [Carnobacterium sp. AT7] gi|159874441|gb|EDP68513.1| ATPase, AAA family protein [Carnobacterium sp. AT7] Length = 428 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 70/191 (36%), Gaps = 36/191 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117 +IL GP G GK+ +A+ + ++ + R N A ++ + +LL+++ Sbjct: 42 MILYGPPGIGKTSIASAIAGTTKFAFRVLNAASDTKKDLQIVVEEAKMSGTVILLLDEVH 101 Query: 118 LLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 LD H+ N +L+ A T + P + SR + ++ + Sbjct: 102 RLDKPKQDFLLPHLEN-----GRIILIGATTENPYITIN-PAIRSR---TQIFELKPLSN 152 Query: 176 DFLEKVI-------VKMFADRQIFIDKKLAAYIVQRMERSLV-FAEKLVDKMDNL----A 223 + ++ + K F + Q+ I + + R+ ++ ++ A Sbjct: 153 EDIQHALWNAVNDSEKGFGNEQVTITDEA----LLHFSRATNGDLRSSLNGLELAIKSTA 208 Query: 224 LSRGMGITRSL 234 IT +L Sbjct: 209 PDEKGIITITL 219 >gi|222480422|ref|YP_002566659.1| 26S proteasome subunit P45 family [Halorubrum lacusprofundi ATCC 49239] gi|222453324|gb|ACM57589.1| 26S proteasome subunit P45 family [Halorubrum lacusprofundi ATCC 49239] Length = 407 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 28/64 (43%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P V+L GP G+GK+ LA +++S +T L I ++ + +L Sbjct: 184 PPSGVLLHGPPGTGKTMLAKAVANESDATFIKMAGSELVRKFIGEGARLVRDLFELAGER 243 Query: 123 DTQL 126 + + Sbjct: 244 EPAV 247 >gi|126737180|ref|ZP_01752915.1| AAA ATPase [Roseobacter sp. SK209-2-6] gi|126721765|gb|EBA18468.1| AAA ATPase [Roseobacter sp. SK209-2-6] Length = 414 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 55/171 (32%), Gaps = 32/171 (18%) Query: 65 RVVILVGPSGSGKSCLANIWSDKS---------RSTRFSNIAKSLDSILIDTRKPVLLED 115 R +L GP G+GKS L + + S+ + TR + +ED Sbjct: 222 RGYLLYGPPGTGKSSLIRALASELSLDIATLDIGRAALSDDDLREAMMCAPTRSLIAIED 281 Query: 116 IDLLDFNDTQ--------LFHIINS----IHQYDSSLLMTA----RTFPVSWGVCLPDLC 159 +D + ++N+ Q +L+MT R P D+ Sbjct: 282 VDAVFAQRKGGEKRSGVSFSGLLNAIDGVAAQEGRALVMTTNHKERLDPALIRPGRADVH 341 Query: 160 SRLK--AATVVKIS----LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 + L A ++ P + L V + Q ++ +++ Sbjct: 342 TELGLVGAATARLLFERFFPGEADLASVFEQRL-RGQRHSPAQIQGWLLAN 391 >gi|50547977|ref|XP_501458.1| YALI0C05038p [Yarrowia lipolytica] gi|49647325|emb|CAG81759.1| YALI0C05038p [Yarrowia lipolytica] Length = 626 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 71/173 (41%), Gaps = 27/173 (15%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRST---------RFSNIAKSLDSI-----LIDTRKP 110 +I GP G GK+ LA I + S + +++ K +D L+ Sbjct: 157 PSIIFWGPPGVGKTTLARILAKTSGNRFVELSATQNNVADVKKVIDQANNEWKLLKRGTI 216 Query: 111 VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 + ++++ + ++ ++ + D +L+ P V L SR + T+ K+ Sbjct: 217 LFIDELHRFSKAQQDV--LLPAVEKGDITLIGATTENPSFRLVGA--LTSRCRVLTLKKL 272 Query: 171 SLPDDDFLEKVIVKMF------ADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 S+ D +++V+ + A+ ++ + ++ YI + + A +++ Sbjct: 273 SMKD---IKEVVERSLVKYNDTAEHEVILPTEVIDYIAGIADGDVRSALNILE 322 >gi|116753844|ref|YP_842962.1| AAA family ATPase, CDC48 subfamily protein [Methanosaeta thermophila PT] gi|116665295|gb|ABK14322.1| AAA family ATPase, CDC48 subfamily [Methanosaeta thermophila PT] Length = 719 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 64/178 (35%), Gaps = 42/178 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106 P + ++L GP G+GK+ LA + +S++ S + ++ Sbjct: 484 PPKGILLYGPPGTGKTLLAKAVATESQANFISVKGPEFLSKWVGESERAVRETFRKAKQA 543 Query: 107 TRKPVLLEDIDLLD---FNDTQLFHIINSIHQY-----------DSSLLMTARTFPVSWG 152 V ++ID + + H+ + + +++ A P Sbjct: 544 APAVVFFDEIDAIAPMRSSGAADSHVTERVISQILSEMDGLEPLHNVIVIAATNRPDIID 603 Query: 153 VCLPDLC----SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206 L L R+ ++I PD++ +++ A+R + D LA I +R E Sbjct: 604 PAL--LRPGRFDRM-----IEIGPPDEESRLEILKIHTANRPLAEDVDLAE-IAKRTE 653 Score = 40.9 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 23/159 (14%), Positives = 58/159 (36%), Gaps = 33/159 (20%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSIL----IDTRKP 110 V+L GP G+GK+ LA + ++ + + + L + + Sbjct: 215 VLLHGPPGTGKTLLARALASETNAHFETLSGPEIMSKYYGESEERLRQLFKTAEENAPSI 274 Query: 111 VLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158 +L+++ID + QL +++ + +++ A P + P L Sbjct: 275 ILIDEIDSIAPKREEVTGEVERRVVAQLLALMDGLESRGKVVIIGATNRPDALD---PAL 331 Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 + ++I +P+ D +++ R + + + Sbjct: 332 RRPGRFDREIEIGVPNRDARLEILQ--IHTRGMPLSSDV 368 >gi|307720121|ref|YP_003891261.1| Recombination protein MgsA [Sulfurimonas autotrophica DSM 16294] gi|306978214|gb|ADN08249.1| Recombination protein MgsA [Sulfurimonas autotrophica DSM 16294] Length = 391 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 71/179 (39%), Gaps = 21/179 (11%) Query: 70 VGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSI--------LIDTRKPVLLEDIDLL 119 GP+G GK+ LA + + + F+ + ++ + + + ++++ L Sbjct: 43 YGPAGVGKTSLARVIAKTMQLPFYEFNATSLKIEQLRKIFEQYKNALQKPLIFIDEVHRL 102 Query: 120 DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLE 179 N ++ + + +S L++ A T + + + SR + + ++ LE Sbjct: 103 SKNQQEVLLP---VMENNSVLIIGASTENPFYSLTSA-IRSR---SMLFELKSILHASLE 155 Query: 180 KVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEV 238 K++ K +I +++ Y++ S A ++ ++ + + IT + Sbjct: 156 KLLQKALQRGEIMLERDAQEYLIAS---SGGDARAMLKLLEFAS-NIQSKITLDTLKSL 210 >gi|302810342|ref|XP_002986862.1| hypothetical protein SELMODRAFT_182690 [Selaginella moellendorffii] gi|300145267|gb|EFJ11944.1| hypothetical protein SELMODRAFT_182690 [Selaginella moellendorffii] Length = 385 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 22/38 (57%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P + V+L GP G+GK+ LA + +SR+ + +L Sbjct: 117 PQKGVLLYGPPGTGKTLLAKAIAKESRAVFINVRIATL 154 >gi|77918707|ref|YP_356522.1| recombination factor protein RarA/unknown domain fusion protein [Pelobacter carbinolicus DSM 2380] gi|77544790|gb|ABA88352.1| Recombination protein MgsA [Pelobacter carbinolicus DSM 2380] Length = 726 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 67/173 (38%), Gaps = 29/173 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIA-----KSLDSILIDTRKPVLLEDIDLLDF 121 +I GP G+GK+ LA + ++ + S S A K L + D R+ D + F Sbjct: 52 LIFYGPPGTGKTTLAQVIANSTASRFVSMNAVLSGVKDLREAIEDARQSQEYYDKRTILF 111 Query: 122 NDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 D H N + + +L+ A T + V L SR + V ++ Sbjct: 112 VDEV--HRWNKSQQDALLPWVEKGTIILIGATTENPYFEVNKA-LVSR---SRVFQLLGL 165 Query: 174 DDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 ++ L +++ + D+ Q+ + ++V+ A L++ + Sbjct: 166 TEENLRQIVTQTLQDKQRGYGKWQVEFEPDALDHLVRVAS---GDARSLLNAL 215 >gi|68476913|ref|XP_717434.1| likely 26S proteasome regulatory particle ATPase Rpt4p [Candida albicans SC5314] gi|68477104|ref|XP_717345.1| likely 26S proteasome regulatory particle ATPase Rpt4p [Candida albicans SC5314] gi|46439054|gb|EAK98376.1| likely 26S proteasome regulatory particle ATPase Rpt4p [Candida albicans SC5314] gi|46439147|gb|EAK98468.1| likely 26S proteasome regulatory particle ATPase Rpt4p [Candida albicans SC5314] Length = 428 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + + + A ++ I ++ E Sbjct: 205 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIRE 256 >gi|327308590|ref|XP_003238986.1| vacuolar sorting ATPase Vps4 [Trichophyton rubrum CBS 118892] gi|326459242|gb|EGD84695.1| vacuolar sorting ATPase Vps4 [Trichophyton rubrum CBS 118892] Length = 434 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 14/80 (17%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + ++L GP G+GKS LA + +++ST FS + L S + + ++ Sbjct: 164 PWKGILLYGPPGTGKSYLAKAVATEAKSTFFSVSSSDLVSKWMGESERLV---------- 213 Query: 123 DTQLFHIINSIHQYDSSLLM 142 QLF N + +++ Sbjct: 214 -KQLF---NMARENKPAIVF 229 >gi|323450113|gb|EGB05996.1| hypothetical protein AURANDRAFT_4792 [Aureococcus anophagefferens] Length = 191 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 15/42 (35%), Positives = 22/42 (52%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL 104 P + V+L GP G GK+ LA + +S +T FS S + Sbjct: 40 PPKGVLLHGPPGCGKTLLAKALARESNATFFSASGSSFVEVY 81 >gi|316979457|gb|EFV62250.1| 26S protease regulatory subunit 6A [Trichinella spiralis] Length = 459 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 32/183 (17%), Positives = 70/183 (38%), Gaps = 38/183 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 PS+ V+L GP G+GK+ +A + +++ST L + I ++ Sbjct: 239 PSKGVLLYGPPGTGKTMMARAVAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 298 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH--QYDSSL-LMTARTFPVSW 151 ++++D + + + ++N + Q + + ++ A Sbjct: 299 APAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPQADIKVIAATNRVDIL 358 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL +++ LP+D +++ R++ IDK + + R Sbjct: 359 DPAL--LRSGRLD--RKIELPLPNDLARSRIMQ--IHSRKMNIDKSVNYDELARCTDDFN 412 Query: 211 FAE 213 A+ Sbjct: 413 GAQ 415 >gi|302652354|ref|XP_003018029.1| mitochondrial chaperone ATPase (Bcs1), putative [Trichophyton verrucosum HKI 0517] gi|291181630|gb|EFE37384.1| mitochondrial chaperone ATPase (Bcs1), putative [Trichophyton verrucosum HKI 0517] Length = 602 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 39/115 (33%), Gaps = 25/115 (21%) Query: 63 PSRVVILV-GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS---------ILIDTRKPVL 112 P R L GP G GK+ L + + S + + R VL Sbjct: 296 PYRRGYLFSGPPGCGKTSLCFAVAGLLGLKIYVANLSSPNLTEEGLASLFATLPRRCIVL 355 Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 LEDID ++L Q + + P + SRLKA++V Sbjct: 356 LEDIDTAGITKSRL--------QAGAP----SSISPAAQNAST---QSRLKASSV 395 >gi|239609667|gb|EEQ86654.1| ABC transporter [Ajellomyces dermatitidis ER-3] gi|327356187|gb|EGE85044.1| ABC transporter [Ajellomyces dermatitidis ATCC 18188] Length = 628 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 12/28 (42%), Positives = 20/28 (71%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRS 90 P V++L+GPSGSGK+ L N+ + + + Sbjct: 60 PGEVMVLMGPSGSGKTTLLNVLAHRQSA 87 >gi|261196864|ref|XP_002624835.1| ABC transporter [Ajellomyces dermatitidis SLH14081] gi|239596080|gb|EEQ78661.1| ABC transporter [Ajellomyces dermatitidis SLH14081] Length = 628 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 12/28 (42%), Positives = 20/28 (71%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRS 90 P V++L+GPSGSGK+ L N+ + + + Sbjct: 60 PGEVMVLMGPSGSGKTTLLNVLAHRQSA 87 >gi|213401803|ref|XP_002171674.1| ribosome biogenesis factor recycling AAA family ATPase [Schizosaccharomyces japonicus yFS275] gi|211999721|gb|EEB05381.1| ribosome biogenesis factor recycling AAA family ATPase [Schizosaccharomyces japonicus yFS275] Length = 807 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 71/201 (35%), Gaps = 36/201 (17%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ + + ++ + F S + K + + Sbjct: 288 PPRGILLYGPPGTGKTMILRAVAAETSAQVFTVDGPSIVGKYLGETESRLRKIFEDARAN 347 Query: 107 TRKPVLLEDIDLL------DFNDTQ------LFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID L D ++ + +++ + ++ A P S Sbjct: 348 QPSIIFVDEIDALVPKRTGDVSEAESRTVATFLTLLDGMANAGRVAVVAATNRPNSIDEA 407 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 L RL+ ++I +PD + ++ +F + + + RS + Sbjct: 408 LRR-PGRLE--KEIEIGIPDKEARLDILKLLFHEVPNSLSDGDIEDLAA---RSHAYVGA 461 Query: 215 LVDKMDNLALSRGMGITRSLA 235 + + A I R +A Sbjct: 462 DLAAVVREA--ALRAIKRVIA 480 >gi|195028710|ref|XP_001987219.1| GH20092 [Drosophila grimshawi] gi|193903219|gb|EDW02086.1| GH20092 [Drosophila grimshawi] Length = 754 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 21/43 (48%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109 V+LVGP G+GK+ LA + ++ F D +L+ Sbjct: 355 VLLVGPPGTGKTLLARAVAGEANVPFFHAAGPEFDEVLVGQGA 397 >gi|154486836|ref|ZP_02028243.1| hypothetical protein BIFADO_00668 [Bifidobacterium adolescentis L2-32] gi|154084699|gb|EDN83744.1| hypothetical protein BIFADO_00668 [Bifidobacterium adolescentis L2-32] Length = 699 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 25/62 (40%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 R V+L GP G+GK+ LA + ++ +S + + + + D N Sbjct: 257 RGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEMFVGLGASRVRDLFDEAKKNAP 316 Query: 125 QL 126 + Sbjct: 317 AI 318 >gi|21108233|gb|AAM36872.1| ATPase [Xanthomonas axonopodis pv. citri str. 306] Length = 429 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 37/200 (18%), Positives = 65/200 (32%), Gaps = 31/200 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA + + + + F I+ L + + VL E + Sbjct: 34 MILWGPPGCGKTTLALLLAHYADAE-FKAISAVLSGLPDVRQ--VLAEAAQRFAGGRRTV 90 Query: 127 F-----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKIS 171 H N Q ++L T L SR + + +S Sbjct: 91 LFVDEVHRFNKAQQDAFLPHIERGTILFVGATTENPSFELNSA---LLSRCRVHVLEGVS 147 Query: 172 LPD--DDFLEKVIVKMFADRQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 D + + A+R + + + I + + A L++ LA Sbjct: 148 PQDIVEALQRAL---RDAERGLGAETIQVSEASLLEIASAADGDVRRALTLLEIAAELAA 204 Query: 225 SRGMGITRSLAAEVLKETQQ 244 G IT +VL + + Sbjct: 205 GEGGEITPQTLLQVLADRTR 224 >gi|88703702|ref|ZP_01101418.1| conserved hypothetical protein [Congregibacter litoralis KT71] gi|88702416|gb|EAQ99519.1| conserved hypothetical protein [Congregibacter litoralis KT71] Length = 401 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 29/190 (15%), Positives = 56/190 (29%), Gaps = 29/190 (15%) Query: 50 EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS------LDSI 103 A + + S V+++ GP SGKS L + R ++ + Sbjct: 14 RHAESRLKHFASG-YPVLVITGPRQSGKSTLVRHAFPEYRYVSLEDLDQREFAEVDPRGF 72 Query: 104 LIDTRKPVLLEDIDLLDFNDTQLFHIIN-SIHQYDSS--LLMTARTFPVSWGVCLPDLCS 160 L +L++ LF I + + ++T L Sbjct: 73 LNQFSGGAILDEAQRCP----TLFSYIQTRVDERQQPGEFILTGSQQFGLLSGITQSLAG 128 Query: 161 RLKAATVVKISLPDDDFLEK---------VIVKMFA----DRQIFIDKKLAAYIVQRMER 207 R AA + + + D+ ++ DR + Y+ +ER Sbjct: 129 R--AALLTLLPMTYDELQRAEKVGQNLDKILFDGAYPPIFDRGLEPHPWHGNYVRTYLER 186 Query: 208 SLVFAEKLVD 217 + K+ D Sbjct: 187 DVRQLIKVQD 196 >gi|313238058|emb|CBY13177.1| unnamed protein product [Oikopleura dioica] Length = 389 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + + ++ ++ I ++ E Sbjct: 166 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 217 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 218 ------MFNYARDHQ 226 >gi|258565449|ref|XP_002583469.1| predicted protein [Uncinocarpus reesii 1704] gi|237907170|gb|EEP81571.1| predicted protein [Uncinocarpus reesii 1704] Length = 953 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 17/30 (56%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 ++L GP G+GK+ LA + +S +T Sbjct: 682 PGLLLYGPPGTGKTLLAKAVARESGATVLE 711 >gi|269860541|ref|XP_002649991.1| 19S/PA700 proteasome regulatory particle subunit Rpt5p/S6' [Enterocytozoon bieneusi H348] gi|220066610|gb|EED44086.1| 19S/PA700 proteasome regulatory particle subunit Rpt5p/S6' [Enterocytozoon bieneusi H348] Length = 400 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V++ GP G+GK+ +A + K+ +T L + I ++ E Sbjct: 180 PPKGVLMYGPPGTGKTLMARACAAKTNATFLKLAGPQLVQMYIGDGARMVRE 231 >gi|218191584|gb|EEC74011.1| hypothetical protein OsI_08942 [Oryza sativa Indica Group] Length = 951 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 50/144 (34%), Gaps = 43/144 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------ILIDTR 108 P + V+L GP G+GK+ LA + ++ + S +L S Sbjct: 694 PCKGVLLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASRL 753 Query: 109 KPVLL--EDIDLLDFNDTQLF-H-----IIN---------SIHQYDSSLLMTA------- 144 PV++ +++D L F H + N + L++ A Sbjct: 754 APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDGLRSKESQRILILGATNRPFDL 813 Query: 145 -----RTFPVSWGVCLPDLCSRLK 163 R P V LPD +R+K Sbjct: 814 DDAVIRRLPRRIYVDLPDAQNRMK 837 >gi|157106603|ref|XP_001649399.1| 26S protease regulatory subunit S10b [Aedes aegypti] gi|94469214|gb|ABF18456.1| 26S proteasome regulatory complex ATPase RPT4 [Aedes aegypti] gi|108879818|gb|EAT44043.1| 26S protease regulatory subunit S10b [Aedes aegypti] Length = 393 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + + ++ ++ I ++ E Sbjct: 170 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 221 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 222 ------MFNYARDHQ 230 >gi|15889208|ref|NP_354889.1| recombination factor protein RarA [Agrobacterium tumefaciens str. C58] gi|15157031|gb|AAK87674.1| ATPase, AAA family protein [Agrobacterium tumefaciens str. C58] Length = 438 Score = 40.9 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 66/188 (35%), Gaps = 31/188 (16%) Query: 54 RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPV 111 R+ID S +I GP G+GK+ +A + S ++ + S I + + Sbjct: 47 RMID---SGSLGSMIFWGPPGTGKTTVARLLSGEAGLAFEQISAIFSGVADLKKVFEAA- 102 Query: 112 LLEDIDLLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPD 157 ++ T LF H N + + +L+ T Sbjct: 103 ---RTRRMNGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTIILVGATTENPSFELNAA--- 156 Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKL 215 L SR A V+ D+D L +++ + + + ++ A +++ + L Sbjct: 157 LLSR---ARVLTFGSHDEDSLSELLKRAEEAEGKPLPLTEEARASLLRMADGDGRAVLTL 213 Query: 216 VDKMDNLA 223 +++ A Sbjct: 214 AEEVWRAA 221 >gi|296412774|ref|XP_002836095.1| hypothetical protein [Tuber melanosporum Mel28] gi|295629900|emb|CAZ80252.1| unnamed protein product [Tuber melanosporum] Length = 648 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+ V+ L GP G GK+ LA +++SR+ S L S + + + Sbjct: 382 PAGVL-LWGPPGCGKTLLAKAVANESRANFISIQGPELLSKYVGESERAV 430 >gi|257387362|ref|YP_003177135.1| proteasome-activating nucleotidase [Halomicrobium mukohataei DSM 12286] gi|257169669|gb|ACV47428.1| 26S proteasome subunit P45 family [Halomicrobium mukohataei DSM 12286] Length = 406 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 28/64 (43%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P V+L GP G+GK+ LA ++++ +T L I ++ + +L Sbjct: 184 PPSGVLLHGPPGTGKTMLAKAVANETDATFIKMAGSELVRKFIGEGARLVRDLFELAADR 243 Query: 123 DTQL 126 + + Sbjct: 244 EPAV 247 >gi|242035791|ref|XP_002465290.1| hypothetical protein SORBIDRAFT_01g035620 [Sorghum bicolor] gi|241919144|gb|EER92288.1| hypothetical protein SORBIDRAFT_01g035620 [Sorghum bicolor] Length = 1110 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 58/164 (35%), Gaps = 45/164 (27%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + ++L GP G+GK+ LA + ++ + + S+ S + + + Sbjct: 842 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSISSKWLGEGEKFVKAVFSLASKI 901 Query: 113 ------LEDIDLL------DFNDTQLFHIIN---------SIHQYDSSLLMTA------- 144 ++++D + + + N + + L++ A Sbjct: 902 APSVIFVDEVDGMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKEKERVLVLAATNRPFDL 961 Query: 145 -----RTFPVSWGVCLPDLCSR--LKAATVVKISLPDDDFLEKV 181 R P V LPD +R + + + K L DD LE + Sbjct: 962 DEAVVRRLPRRLMVNLPDASNRRKILSVILAKEDLADDVDLEAI 1005 >gi|303320579|ref|XP_003070289.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta SOWgp] gi|240109975|gb|EER28144.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta SOWgp] Length = 762 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 27/57 (47%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P R V+L GP G GK+ +AN ++ + + A S+ S + + L E D Sbjct: 228 PPRGVLLHGPPGCGKTLIANAFAAELGVPFIAISAPSIVSGMSGESEKALREHFDEA 284 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 23/46 (50%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 V+L GP G GK+ LA +++SR+ S L + + + + Sbjct: 537 VLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAV 582 >gi|212526932|ref|XP_002143623.1| proteasome regulatory particle subunit Rpt5, putative [Penicillium marneffei ATCC 18224] gi|210073021|gb|EEA27108.1| proteasome regulatory particle subunit Rpt5, putative [Penicillium marneffei ATCC 18224] Length = 465 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 53/160 (33%), Gaps = 38/160 (23%) Query: 70 VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113 GP G+GK+ LA + ++ +T L + I ++ + Sbjct: 251 YGPPGTGKTLLARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPSIIFI 310 Query: 114 EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158 +++D + + ++N D ++ A L L Sbjct: 311 DELDAVGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRVKVLAATNRVDVLDPAL--L 368 Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 S RL ++ LP+++ +++ R++ D + Sbjct: 369 RSGRLD--RKIEFPLPNEEARAQILQ--IHSRKMTTDDGV 404 >gi|209560132|ref|YP_002286604.1| recombination factor protein RarA [Streptococcus pyogenes NZ131] gi|209541333|gb|ACI61909.1| ATPase, AAA family [Streptococcus pyogenes NZ131] Length = 422 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 59/166 (35%), Gaps = 22/166 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST---------RFSNIAKSLDSILIDTRKPVLLEDID 117 +IL GP G GK+ +A+ + +R + + + +LL++I Sbjct: 42 MILYGPPGIGKTSIASAIAGTTRYAFRTFNATIDSKKRLQEIAEEAKFSGGLVLLLDEIH 101 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 LD + +++M T + P + SR + ++ ++ Sbjct: 102 RLDKTKQDFL----LPLLENGTIIMIGATTENPFFSVTPAIRSR---VQIFELEPLSNED 154 Query: 178 LEKVIVKMFAD--RQ----IFIDKKLAAYIVQRMERSLVFAEKLVD 217 ++ I +D R + ID + +IV L A +D Sbjct: 155 IKTAIQLAISDKERGFPFLVTIDDEALDFIVTTTNGDLRSAYNSLD 200 >gi|195454601|ref|XP_002074317.1| GK18355 [Drosophila willistoni] gi|194170402|gb|EDW85303.1| GK18355 [Drosophila willistoni] Length = 423 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 34/152 (22%), Positives = 63/152 (41%), Gaps = 35/152 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------ILIDTR 108 P R V+L GP G+GK+ +A + ++++ FS SL S + Sbjct: 182 PPRGVLLFGPPGTGKTLIAKSIASQAKAKFFSINPSSLTSKWVGEGEKLVRTLFAVAAAH 241 Query: 109 KPVL--LEDIDLL----DFNDTQ---------LFHIINS-IHQYDSSLLMTARTFPVSWG 152 +P + ++++D L N+ + L H+ + + + L++ A P Sbjct: 242 QPAIIFIDEVDSLLSKRSGNEHESSLRLKNEFLIHLDGATTSEENRILVIGATNRPQEL- 300 Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 D R + + I LPD D +++IVK Sbjct: 301 ----DEAVRRRFVRRLYIPLPDKDARKQIIVK 328 >gi|167379134|ref|XP_001735005.1| transitional endoplasmic reticulum ATPase [Entamoeba dispar SAW760] gi|165903136|gb|EDR28786.1| transitional endoplasmic reticulum ATPase, putative [Entamoeba dispar SAW760] Length = 781 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 32/190 (16%), Positives = 59/190 (31%), Gaps = 40/190 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106 PS+ V+ GP G GK+ LA + + ++ S N+ D Sbjct: 518 PSKGVLFFGPPGCGKTLLAKAVASQCKANFISIKGPELLTMWYGESEANVRDVFDKARQA 577 Query: 107 TRKPVLLEDIDLLDFND---------------TQLFHIINSIHQYDSSLLMTARTFPVSW 151 + +++D + QL ++ I + ++ A P Sbjct: 578 APCVLFFDELDSIGKARGGGVGDAGGSADRILNQLLTEMDGIGKKKQVFIIGATNRPDIL 637 Query: 152 GVCLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMER-S 208 L L RL I LPD ++ R + + +I + E S Sbjct: 638 DPAL--LRPGRLDQLLF--IPLPDKASRVSIL--RAKLRNSPVAPDVDLDWIAEHTENFS 691 Query: 209 LVFAEKLVDK 218 ++V + Sbjct: 692 GADLAEIVQR 701 Score = 39.4 bits (91), Expect = 0.50, Method: Composition-based stats. Identities = 23/164 (14%), Positives = 59/164 (35%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + V+L GP G GK+ +A ++++ N+ ++ + Sbjct: 245 PPKGVLLYGPPGCGKTMIARAVANETGVFLILINGPEIMSKMAGESEGNLREAFAEAEKN 304 Query: 107 TRKPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + + ++M A P + Sbjct: 305 APALIFIDEIDSIAPKRDKAQGEVERRVVAQLLTLMDGMKSRSNVIVMAATNRPNAIDSA 364 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L R + + I +PD+ +++ +++ I + Sbjct: 365 LR----RFGRFDREIDIGVPDETGRLEIL--NIHTKKMKIADDV 402 >gi|146341817|ref|YP_001206865.1| CbxX/CfqX family protein [Bradyrhizobium sp. ORS278] gi|146194623|emb|CAL78648.1| hypothetical protein; putative cbxX/cfqX family protein (N-term) and peptidase (C-term) [Bradyrhizobium sp. ORS278] Length = 925 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 28/208 (13%), Positives = 68/208 (32%), Gaps = 35/208 (16%) Query: 64 SRVVILVGPSGSGKSCLANIW--------------------SDKSRSTRFSNIAKSLDSI 103 +R ++ GP G+GK+ +A +D K+LD Sbjct: 169 NRHMVFTGPPGAGKTEVARALGEIYRSLKVLRKGHVVEVQRADLIAGYIGQTALKTLDKC 228 Query: 104 LIDTRKPVLLEDI-----DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCL--- 155 + +++ + DF + ++ + +++ A +P + Sbjct: 229 KEALDGILFIDEAYSLAGEGKDFGHEAIATLLKFMEDNRDRIMVIAAGYPNEMRRFIAMN 288 Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKK----LAAYIVQRM-ERSLV 210 P L SR ++ + L ++ M + + L +I R Sbjct: 289 PGLASRFN--RTIEFPAYEPKELAAILRLMATRQGAELPDDLEQSLIPWIETRWKGEGWG 346 Query: 211 FAEKLVDKMDNLALSRGMGITRSLAAEV 238 A ++ +D + ++ + + AA++ Sbjct: 347 NAREMRSLLDKASEAQSLRVAVDAAADI 374 >gi|22124635|ref|NP_668058.1| ribose 1,5-bisphosphokinase [Yersinia pestis KIM 10] gi|45440472|ref|NP_992011.1| ribose 1,5-bisphosphokinase [Yersinia pestis biovar Microtus str. 91001] gi|51594861|ref|YP_069052.1| ribose 1,5-bisphosphokinase [Yersinia pseudotuberculosis IP 32953] gi|108808957|ref|YP_652873.1| ribose 1,5-bisphosphokinase [Yersinia pestis Antiqua] gi|108810788|ref|YP_646555.1| ribose 1,5-bisphosphokinase [Yersinia pestis Nepal516] gi|145600528|ref|YP_001164604.1| ribose 1,5-bisphosphokinase [Yersinia pestis Pestoides F] gi|153947281|ref|YP_001402521.1| ribose 1,5-bisphosphokinase [Yersinia pseudotuberculosis IP 31758] gi|153997496|ref|ZP_02022596.1| PhnN protein [Yersinia pestis CA88-4125] gi|162418681|ref|YP_001608317.1| ribose 1,5-bisphosphokinase [Yersinia pestis Angola] gi|165925806|ref|ZP_02221638.1| putative phosphonate metabolism ribose 1,5-bisphosphokinase PhnN [Yersinia pestis biovar Orientalis str. F1991016] gi|165936660|ref|ZP_02225227.1| putative phosphonate metabolism ribose 1,5-bisphosphokinase PhnN [Yersinia pestis biovar Orientalis str. IP275] gi|166010147|ref|ZP_02231045.1| putative phosphonate metabolism ribose 1,5-bisphosphokinase PhnN [Yersinia pestis biovar Antiqua str. E1979001] gi|166214293|ref|ZP_02240328.1| putative phosphonate metabolism ribose 1,5-bisphosphokinase PhnN [Yersinia pestis biovar Antiqua str. B42003004] gi|167399366|ref|ZP_02304890.1| putative phosphonate metabolism ribose 1,5-bisphosphokinase PhnN [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420639|ref|ZP_02312392.1| putative phosphonate metabolism ribose 1,5-bisphosphokinase PhnN [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423745|ref|ZP_02315498.1| putative phosphonate metabolism ribose 1,5-bisphosphokinase PhnN [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167467363|ref|ZP_02332067.1| putative phosphonate metabolism ribose 1,5-bisphosphokinase PhnN [Yersinia pestis FV-1] gi|186893870|ref|YP_001870982.1| ribose 1,5-bisphosphokinase [Yersinia pseudotuberculosis PB1/+] gi|218930478|ref|YP_002348353.1| ribose 1,5-bisphosphokinase [Yersinia pestis CO92] gi|229839113|ref|ZP_04459272.1| PhnN protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229896601|ref|ZP_04511768.1| PhnN protein [Yersinia pestis Pestoides A] gi|229899677|ref|ZP_04514818.1| PhnN protein [Yersinia pestis biovar Orientalis str. India 195] gi|229900988|ref|ZP_04516112.1| PhnN protein [Yersinia pestis Nepal516] gi|270489169|ref|ZP_06206243.1| phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN [Yersinia pestis KIM D27] gi|294505168|ref|YP_003569230.1| PhnN protein [Yersinia pestis Z176003] gi|21957442|gb|AAM84309.1|AE013674_5 ATP-binding protein [Yersinia pestis KIM 10] gi|45435329|gb|AAS60888.1| PhnN protein [Yersinia pestis biovar Microtus str. 91001] gi|51588143|emb|CAH19749.1| PhnN protein [Yersinia pseudotuberculosis IP 32953] gi|108774436|gb|ABG16955.1| PhnN protein [Yersinia pestis Nepal516] gi|108780870|gb|ABG14928.1| PhnN protein [Yersinia pestis Antiqua] gi|115349089|emb|CAL22052.1| PhnN protein [Yersinia pestis CO92] gi|145212224|gb|ABP41631.1| PhnN protein [Yersinia pestis Pestoides F] gi|149289133|gb|EDM39213.1| PhnN protein [Yersinia pestis CA88-4125] gi|152958776|gb|ABS46237.1| putative phosphonate metabolism ribose 1,5-bisphosphokinase PhnN [Yersinia pseudotuberculosis IP 31758] gi|162351496|gb|ABX85444.1| putative phosphonate metabolism ribose 1,5-bisphosphokinase PhnN [Yersinia pestis Angola] gi|165915309|gb|EDR33919.1| putative phosphonate metabolism ribose 1,5-bisphosphokinase PhnN [Yersinia pestis biovar Orientalis str. IP275] gi|165922418|gb|EDR39595.1| putative phosphonate metabolism ribose 1,5-bisphosphokinase PhnN [Yersinia pestis biovar Orientalis str. F1991016] gi|165991054|gb|EDR43355.1| putative phosphonate metabolism ribose 1,5-bisphosphokinase PhnN [Yersinia pestis biovar Antiqua str. E1979001] gi|166204525|gb|EDR49005.1| putative phosphonate metabolism ribose 1,5-bisphosphokinase PhnN [Yersinia pestis biovar Antiqua str. B42003004] gi|166961445|gb|EDR57466.1| putative phosphonate metabolism ribose 1,5-bisphosphokinase PhnN [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051870|gb|EDR63278.1| putative phosphonate metabolism ribose 1,5-bisphosphokinase PhnN [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057915|gb|EDR67661.1| putative phosphonate metabolism ribose 1,5-bisphosphokinase PhnN [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186696896|gb|ACC87525.1| phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN [Yersinia pseudotuberculosis PB1/+] gi|229682327|gb|EEO78419.1| PhnN protein [Yersinia pestis Nepal516] gi|229687169|gb|EEO79244.1| PhnN protein [Yersinia pestis biovar Orientalis str. India 195] gi|229695479|gb|EEO85526.1| PhnN protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700379|gb|EEO88411.1| PhnN protein [Yersinia pestis Pestoides A] gi|262363230|gb|ACY59951.1| PhnN protein [Yersinia pestis D106004] gi|262367161|gb|ACY63718.1| PhnN protein [Yersinia pestis D182038] gi|270337673|gb|EFA48450.1| phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN [Yersinia pestis KIM D27] gi|294355627|gb|ADE65968.1| PhnN protein [Yersinia pestis Z176003] gi|320016669|gb|ADW00241.1| PhnN protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 193 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 30/73 (41%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123 +R++ L+GPSG+GK CL + + + R V L + + + Sbjct: 2 ARLIYLMGPSGAGKDCLLSALRNATPQNRVVAHRYITRPADAGAENHVALSKQEFIQRAE 61 Query: 124 TQLFHIINSIHQY 136 LF + HQ+ Sbjct: 62 QGLFALHWQAHQH 74 >gi|315633927|ref|ZP_07889216.1| replication-associated recombination protein A [Aggregatibacter segnis ATCC 33393] gi|315477177|gb|EFU67920.1| replication-associated recombination protein A [Aggregatibacter segnis ATCC 33393] Length = 446 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 41/202 (20%), Positives = 79/202 (39%), Gaps = 33/202 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKP-----------VLL 113 +I GP G+GK+ LA I + + ++ R S + + I K + + Sbjct: 53 MIFWGPPGTGKTTLAEIIAQRIQAEVERISAVTSGIKEIREAIEKAKQNKLAGLRTILFV 112 Query: 114 EDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++ + + F HI + + + + A T S+ + L SR A V + Sbjct: 113 DEVHRFNKSQQDAFLPHI-----EDGTIIFIGATTENPSFELNNA-LLSR---ARVYILK 163 Query: 172 LPDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNLA 223 +E+V+ + D ++ + L + + + + A ++ M D A Sbjct: 164 PLSTQEIERVLQQAIDDPENGLGKVRLDLQANLLSLLAEYVNGDARLALNCLEMMVDMAA 223 Query: 224 LSRGMGI-TRSLAAEVLKETQQ 244 S+ I R+L EVL E Q Sbjct: 224 ESKNGKILDRTLLTEVLGERQA 245 >gi|313895524|ref|ZP_07829080.1| Holliday junction DNA helicase RuvB [Selenomonas sp. oral taxon 137 str. F0430] gi|312975650|gb|EFR41109.1| Holliday junction DNA helicase RuvB [Selenomonas sp. oral taxon 137 str. F0430] Length = 344 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 71/183 (38%), Gaps = 15/183 (8%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT-Q 125 V+L GP G GK+ LA I +++ + A +++ L+D D+L ++ + Sbjct: 59 VLLYGPPGLGKTTLAGIIANEMGANFRQTSAPAIERQGDLASLLTNLQDHDVLFIDEIHR 118 Query: 126 LFH-----IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 L H + +++ + +++ P + + L DL K L Sbjct: 119 LSHHVEEILYSAMEDHAIDIII--GKGPSARSIRL-DLAPFTLVGATTKTGA-----LSA 170 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + F Q ++ ++ +ER+ ++ L ++R T +A +LK Sbjct: 171 PLRDRFGI-QARLEYYTPEALLLIIERTAEILSVTIEHEGALEIARRSRGTPRVANRILK 229 Query: 241 ETQ 243 + Sbjct: 230 RVR 232 >gi|298708657|emb|CBJ26144.1| conserved unknown protein [Ectocarpus siliculosus] Length = 966 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 20/43 (46%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109 V+L GP G GK+ LA +++S + S L + + Sbjct: 696 VLLYGPPGCGKTLLAKAIANESGANFISVKGPELLDKYVGESE 738 Score = 37.8 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 16/25 (64%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDK 87 P R ++L GP G GK+ LAN + + Sbjct: 297 PPRGILLHGPPGCGKTLLANAIAGE 321 >gi|294784749|ref|ZP_06750037.1| conserved hypothetical protein [Fusobacterium sp. 3_1_27] gi|294486463|gb|EFG33825.1| conserved hypothetical protein [Fusobacterium sp. 3_1_27] Length = 1252 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 66/135 (48%), Gaps = 21/135 (15%) Query: 64 SRVVILVGPSGSGKSCLANIWS----DKSRSTRFSNIAKSLD-------SILIDTRKPVL 112 + +VIL G +G+GK+ LA ++ D + + +K+L+ + ++ Sbjct: 206 NNIVILNGVAGTGKTHLALHYAKNYIDSHNAKLYCISSKALEIYEDLKLFLNTSGEYILV 265 Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDS----SLLMTARTFPVSWGVCLPDLCSRLKAATVV 168 ++D + L +L HIIN ++ +L+T R++ + L ++ +R + V+ Sbjct: 266 VDDANQLS---ARLEHIINYVNMQSKGFNVKILITVRSY--ALQKVLNNIQARTSYS-VI 319 Query: 169 KISLPDDDFLEKVIV 183 I+L DD ++K++ Sbjct: 320 GINLFTDDEIKKLLE 334 >gi|290987216|ref|XP_002676319.1| proteasome subunit [Naegleria gruberi] gi|284089920|gb|EFC43575.1| proteasome subunit [Naegleria gruberi] Length = 394 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 22/48 (45%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 V+L GP G+GK+ LA + + +A ++ I ++ E Sbjct: 175 VLLYGPPGTGKTLLARAIASNIDANFLKVVASAIVDKYIGESARIIRE 222 >gi|238573831|ref|XP_002387442.1| hypothetical protein MPER_13827 [Moniliophthora perniciosa FA553] gi|215442768|gb|EEB88372.1| hypothetical protein MPER_13827 [Moniliophthora perniciosa FA553] Length = 119 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 2/48 (4%) Query: 50 EQAVRLIDSWPSW--PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN 95 +A R++D W P ++ L+G SG+GK+ L ++ ++++ + S Sbjct: 32 GEARRILDHVDGWVEPGKLTALMGASGAGKTTLLDVLANRASTGVISG 79 >gi|167621667|ref|YP_001672175.1| IstB ATP binding domain-containing protein [Caulobacter sp. K31] gi|167646216|ref|YP_001683879.1| IstB ATP-binding domain-containing protein [Caulobacter sp. K31] gi|167648131|ref|YP_001685794.1| IstB ATP-binding domain-containing protein [Caulobacter sp. K31] gi|167348646|gb|ABZ71381.1| IstB domain protein ATP-binding protein [Caulobacter sp. K31] gi|167350561|gb|ABZ73296.1| IstB domain protein ATP-binding protein [Caulobacter sp. K31] gi|167351790|gb|ABZ74516.1| IstB domain protein ATP-binding protein [Caulobacter sp. K31] Length = 242 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 55/148 (37%), Gaps = 23/148 (15%) Query: 32 FPRCLGISRDDLLVHSAIEQAVRLI-DSWPSWPSRVVILVGPSGSGKSCLANIWSD---K 87 P ++ E VR + D R ++LVG +G+GK+ LA + + Sbjct: 65 LPVMKDLAAFSFEGSPINEGLVRSLYDGAFLANHRNIVLVGGTGTGKTHLAIAITANVVR 124 Query: 88 SRSTR-----FSNIAKSLDSILIDTRKPVL--LEDIDLLDFND-----------TQLFHI 129 S + + + D + L +DL+ ++ +LFH+ Sbjct: 125 SGARGRYFNTVDLVNRLEDEARRGKAGALAAQLSRLDLVVLDELGYLPFAQSGGQRLFHL 184 Query: 130 INSIHQYDSSLLMTARTFPVSWGVCLPD 157 ++ +++ +S+++T W D Sbjct: 185 VSKLYER-TSVIITTNLTFAEWPTVFGD 211 >gi|55163161|emb|CAH61110.1| IstB protein [Yersinia enterocolitica subsp. palearctica Y11] Length = 217 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 21/107 (19%) Query: 65 RVVILVGPSGSGKSCLANI----WSDKSRSTRFSNIAKSLDSILIDTRK----------- 109 R +I VG G+GK+ LA + RF N+ ++ + +D Sbjct: 75 RNIIFVGGPGTGKTHLATALGINAATNGFKVRFWNVLDLVNKLELDKESKQFKLTNQLTK 134 Query: 110 --PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSW 151 ++L+D+ L F+ LFH+I+ +H++ +S+++T W Sbjct: 135 LDLIVLDDLGYLPFSQKGGALLFHLISQLHEH-TSIMITTNLAFSEW 180 >gi|19553890|ref|NP_601892.1| cell division protein [Corynebacterium glutamicum ATCC 13032] gi|62391533|ref|YP_226935.1| cell-division protein (ATP-dependent Zn metallopeptidase) [Corynebacterium glutamicum ATCC 13032] gi|75368391|sp|Q6M2F0|FTSH_CORGL RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|41326875|emb|CAF20719.1| CELL-DIVISION PROTEIN (ATP-DEPENDENT ZN METALLOPEPTIDASE) [Corynebacterium glutamicum ATCC 13032] Length = 853 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 34/206 (16%), Positives = 66/206 (32%), Gaps = 49/206 (23%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110 R V+L GP G+GK+ LA + ++ +S + + Sbjct: 199 RGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFKQAKENSP 258 Query: 111 --VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFP----- 148 + +++ID + D + L + ++ +LM A P Sbjct: 259 CIIFVDEIDAVGRARGSGMGGGHDEREQTLNQLLVEMDGFGDRQGVILMAATNRPDVLDP 318 Query: 149 ---------VSWGVCLPDLCSRLKAATVVKISLP--DDDFLEKVIVKMFADRQIFIDKKL 197 V PDL R + V P D ++ + + + L Sbjct: 319 ALLRPGRFDRQIPVTNPDLRGREQILEVHAKGKPFAPDADIKALAKRTAGMSGADLANVL 378 Query: 198 --AAYIVQRMERSLVFAEKLVDKMDN 221 AA + R+ +++ A+ L + D Sbjct: 379 NEAALLTARVGGNVITADALEEATDR 404 >gi|88856265|ref|ZP_01130925.1| holliday junction DNA helicase [marine actinobacterium PHSC20C1] gi|88814584|gb|EAR24446.1| holliday junction DNA helicase [marine actinobacterium PHSC20C1] Length = 343 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 34/199 (17%), Positives = 73/199 (36%), Gaps = 30/199 (15%) Query: 67 VILVGPSGSGKSCLANIWSDK--------SRSTRFSNIAKSLDSILIDTRKPVLLEDIDL 118 ++L GP G GK+ LA I + + S + + + + +++I Sbjct: 60 ILLAGPPGLGKTTLAMIVAHESNRPLRMSSGPAIQHAGDLAAVLSSLLPGEVLFIDEIHR 119 Query: 119 LDFNDTQLFHI------INSIHQYDS-----SL------LMTARTFPVSWGVCLPDLCSR 161 + + ++ ++ I+ + + L L+ A T L D Sbjct: 120 MARSAEEMLYLAMEDFRIDIMVGKGAGATSIPLDIAPFTLVGATTRSGLLPNPLRD---- 175 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 + + D+ LE+V+V+ + ID+ A I R + A +L+ ++ + Sbjct: 176 -RFGFTAHLEFYDEPELEQVLVRAAVMLDLDIDRTAIAEIAGRCRGTPRIANRLLRRVRD 234 Query: 222 LALSRGMGITRSLAAEVLK 240 AL + +R L+ Sbjct: 235 YALVNHIPASRDAVRAALE 253 >gi|332795777|ref|YP_004457277.1| AAA ATPase central domain-containing protein [Acidianus hospitalis W1] gi|332693512|gb|AEE92979.1| AAA ATPase central domain protein [Acidianus hospitalis W1] Length = 540 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 79/191 (41%), Gaps = 34/191 (17%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + ++L GP G+GK+ +A +++ +++ + + S I + + Sbjct: 315 PVKGILLYGPPGTGKTSIAKAMANELKASFIILSGEEIASAQIRAPEVIAEKFNIARDNS 374 Query: 113 -----LEDIDLLDFND---------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158 +++ID++ N T+L I+ I + D +L+ A P W + L Sbjct: 375 PAVIFIDEIDMIAKNRMFNEWRNALTELLTQIDGIRETDDIILVGATNRP--WDLDPAIL 432 Query: 159 C-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSL--VFAEKL 215 R+ +V + PD + KV+ + + + +D+K V ++ + + + Sbjct: 433 RPGRID--KLVYVPPPDYEGRIKVLKVLT--KGLEVDEKTIE-EVAKITENYTPADLKLV 487 Query: 216 VDKMDNLALSR 226 VD++ L Sbjct: 488 VDEIRRNLLKE 498 >gi|308181125|ref|YP_003925253.1| recombination factor protein RarA [Lactobacillus plantarum subsp. plantarum ST-III] gi|308046616|gb|ADN99159.1| recombination factor protein RarA [Lactobacillus plantarum subsp. plantarum ST-III] Length = 426 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 56/133 (42%), Gaps = 20/133 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117 +IL GP G+GK+ +A+ + ++ + R N A + + +LL++I Sbjct: 42 MILYGPPGTGKTSIASAIAGSTKYAFRMLNAATDSKKQLQIVAEEAKMSGTVILLLDEIH 101 Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 LD D L H+ + +L+ A T + P + SR + ++ D Sbjct: 102 RLDKTKQDFLLPHL-----ESGRIILIGATTENPYISIN-PAIRSR---TQIFQVFPLTD 152 Query: 176 DFLEKVIVKMFAD 188 D ++ + + AD Sbjct: 153 DDIQHAVERALAD 165 >gi|307130789|ref|YP_003882805.1| recombination protein [Dickeya dadantii 3937] gi|306528318|gb|ADM98248.1| recombination protein [Dickeya dadantii 3937] Length = 447 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 42/199 (21%), Positives = 68/199 (34%), Gaps = 38/199 (19%) Query: 67 VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G+GK+ LA + ++ R S + + I + + T Sbjct: 53 MILWGPPGTGKTTLAELIGRYGQADVERISAVTSGIKEIREAIERA----RQNRDAGRRT 108 Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N Q D ++ T L SR A V + Sbjct: 109 ILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSA---LLSR---ARVYLL 162 Query: 171 SLPDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRM----ERSLVFAEKLVDKM 219 D +E+V+ + D+ QI + + + + RSL E + D Sbjct: 163 KALSADDIEQVLDQALQDKERGLGGQQIVLPDDTRRLLAELVNGDARRSLNLLEMMADMA 222 Query: 220 DNLALSRGMGITRSLAAEV 238 + A S +T +L EV Sbjct: 223 EVDA-SGQRVLTSALLKEV 240 >gi|290973039|ref|XP_002669257.1| predicted protein [Naegleria gruberi] gi|284082802|gb|EFC36513.1| predicted protein [Naegleria gruberi] Length = 443 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 23/38 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P + ++L GP G+GKS LA + ++ ST FS A L Sbjct: 167 PWKGILLYGPPGTGKSYLAKAVATEANSTFFSVSASDL 204 >gi|257888138|ref|ZP_05667791.1| AAA ATPase [Enterococcus faecium 1,141,733] gi|257824192|gb|EEV51124.1| AAA ATPase [Enterococcus faecium 1,141,733] Length = 428 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 27/172 (15%), Positives = 66/172 (38%), Gaps = 24/172 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117 +IL GP G+GK+ +A+ + + + R N A + + +LL+++ Sbjct: 42 MILYGPPGTGKTSIASAIAGSTNYAFRMLNAATDSKKELQVVAEEAKMSGTVILLLDEVH 101 Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 LD D L H+ + +L+ A T + P + SR + ++ + Sbjct: 102 RLDKTKQDFLLPHL-----ESGRIILIGATTENPYITIN-PAIRSR---TQIFEVKPLTE 152 Query: 176 DFLEKVIVKMFADRQIFIDKKLAAY---IVQRMERSLV-FAEKLVDKMDNLA 223 ++ + D++ + ++ + + R+ ++ ++ A Sbjct: 153 QDIQLAVKHALKDKERGLGQQAIQLDEEALLHLSRATNGDLRSALNGLELAA 204 >gi|257464779|ref|ZP_05629150.1| recombination factor protein RarA [Actinobacillus minor 202] gi|257450439|gb|EEV24482.1| recombination factor protein RarA [Actinobacillus minor 202] Length = 426 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 65/200 (32%), Gaps = 35/200 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I GP G+GK+ LA I + + R S + + I + ++ T Sbjct: 34 MIFWGPPGTGKTTLAEIIAYHFDADVERLSAVTSGIKEIREAIERA----KLNRQTGRRT 89 Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N Q D +++ T L SR A V + Sbjct: 90 LLFVDEVHRFNKSQQDAFLPYIEDGTIIFIGATTENPSFELNNA---LLSR---ARVYIL 143 Query: 171 SLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + V+ D R + + + + + +A +++M ++A Sbjct: 144 KPLQSADILLVLQNALNDKTRGLGAEKIVLKDNVLNLLADYVNGDARYALNCLEQMSDMA 203 Query: 224 LS--RGMGITRSLAAEVLKE 241 G +L E+L E Sbjct: 204 TQTEAGKLFDLNLLTEILGE 223 >gi|227488176|ref|ZP_03918492.1| IstB domain protein ATP-binding protein [Corynebacterium glucuronolyticum ATCC 51867] gi|227091865|gb|EEI27177.1| IstB domain protein ATP-binding protein [Corynebacterium glucuronolyticum ATCC 51867] Length = 252 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 54/150 (36%), Gaps = 30/150 (20%) Query: 58 SWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------- 104 +W P+ + IL P+G+GK+ + + +S LD ++ Sbjct: 98 NWRENPTNIHILA-PTGTGKTYIVCAIGVAACQAGYSVAYYRLDQLVDMLAVFSPTDQNY 156 Query: 105 ------IDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL--LMTARTFPVSWGVCLP 156 + ++++D + N + I D L L+++++ W LP Sbjct: 157 LDKMRKLINVDVLIIDDFMTMSINQRGQEDLSKIIFDRDGRLPTLISSQSAAAYWVEELP 216 Query: 157 D------LCSRLKAATVVKISLPDDDFLEK 180 D L SRL ++I D D + Sbjct: 217 DRVGADSLVSRLNNGHRIRIG--DFDMRKA 244 >gi|225025939|ref|ZP_03715131.1| hypothetical protein EUBHAL_00175 [Eubacterium hallii DSM 3353] gi|224956725|gb|EEG37934.1| hypothetical protein EUBHAL_00175 [Eubacterium hallii DSM 3353] Length = 334 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 61/186 (32%), Gaps = 45/186 (24%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G GK+ LA I +++ S +++ L D D+L ++ Sbjct: 55 VLLYGPPGLGKTTLAGIIANEMDSNLKITSGPAIEKPGEIAAVLNGLSDGDVLFIDEI-- 112 Query: 127 FHIINSIHQYDSS---------LLMTARTFPVSWGVCLPD----------------LCSR 161 H +N + +++ S + LP L R Sbjct: 113 -HRLNRQVEEVLYPAMEDFSIDIMIGKGASAKSIRLELPHFTLVGATTRAGMLTAPLRDR 171 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFID--------------KKLAAYIVQRMER 207 V ++ D+ L+ ++ + + ID +LA +++R+ R Sbjct: 172 F--GVVNRLEFYTDEELKVIVERSAELLGVKIDEAGAMEVGKRSRGTPRLANRLLKRV-R 228 Query: 208 SLVFAE 213 Sbjct: 229 DFAQVR 234 >gi|207092026|ref|ZP_03239813.1| recombination factor protein RarA [Helicobacter pylori HPKX_438_AG0C1] Length = 367 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 32/189 (16%), Positives = 71/189 (37%), Gaps = 25/189 (13%) Query: 65 RVVILVGPSGSGKSCLANIWS--DKSRSTRFSNIAKSLDSILI--------DTRKPVLLE 114 GP G GK+ LA I + + F+ L+ + + + V ++ Sbjct: 38 PHAFFYGPPGVGKTSLAQIIACMLERPILLFNATDFKLEDLRLKLKNYQNTLLKPVVFID 97 Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 + L+ + I + + +L++ A T ++ + + SR + + +++ Sbjct: 98 ETHRLNKTQQEFLLPI---MEKNHALILGASTQDPNYSLSHA-IRSR---SFIFELTPLK 150 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234 L+K+ K A + I+ Y++ S A L++ +D A I + Sbjct: 151 KSDLDKLCAKALALLKKQIEPGAKTYLLNN---SAGDARALLNLLDLSA-----KIENPI 202 Query: 235 AAEVLKETQ 243 E L+ + Sbjct: 203 TLETLQSLR 211 >gi|196012762|ref|XP_002116243.1| hypothetical protein TRIADDRAFT_30677 [Trichoplax adhaerens] gi|190581198|gb|EDV21276.1| hypothetical protein TRIADDRAFT_30677 [Trichoplax adhaerens] Length = 478 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 33/129 (25%), Positives = 47/129 (36%), Gaps = 28/129 (21%) Query: 67 VILVGPSGSGKSCLANIWS--DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN-D 123 +I GP G GK+ LANI + KS++ + S R+ + + D FN Sbjct: 81 MIFWGPPGCGKTTLANIIAKSGKSKANMRFIQLSATSSGTQKVREVIDIAQKDRTMFNRQ 140 Query: 124 TQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSR-------- 161 T LF H N + + +L+ T S L SR Sbjct: 141 TILFMDEIHRFNKAQQDVFLPYVENGTIVLIGATTENPSFSLNNA---LLSRCHVITLQK 197 Query: 162 LKAATVVKI 170 L +A VV I Sbjct: 198 LSSANVVTI 206 >gi|297619884|ref|YP_003707989.1| 26S proteasome subunit P45 family [Methanococcus voltae A3] gi|297378861|gb|ADI37016.1| 26S proteasome subunit P45 family [Methanococcus voltae A3] Length = 405 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + ++L GP G+GK+ LA + ++ ++ + L I ++ + Sbjct: 179 PPKGILLYGPPGTGKTLLAKAVAYETNASFIRVVGSELVKKFIGEGAKLVRD 230 >gi|55379751|ref|YP_137601.1| proteasome-activating nucleotidase [Haloarcula marismortui ATCC 43049] gi|55232476|gb|AAV47895.1| proteasome-activating nucleotidase 1 [Haloarcula marismortui ATCC 43049] Length = 406 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 28/64 (43%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P V+L GP G+GK+ LA ++++ +T L I ++ + +L Sbjct: 184 PPSGVLLHGPPGTGKTMLAKAVANETDATFIKMAGSELVRKFIGEGARLVRDLFELAAER 243 Query: 123 DTQL 126 + + Sbjct: 244 EPAI 247 >gi|330719421|ref|ZP_08314021.1| recombination factor protein RarA [Leuconostoc fallax KCTC 3537] Length = 428 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 57/134 (42%), Gaps = 20/134 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117 +IL GP G+GK+ +A+ + S+ + R N A + + +LL++I Sbjct: 43 MILYGPPGTGKTSIASAIAGSSKYAFRVLNAATDSKKDLQIVAEEAKMSGSVVLLLDEIH 102 Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 LD D L H+ + + +L+ A T V P + SR + ++ + Sbjct: 103 RLDKTKQDFLLPHL-----ESGNIILIGATTENPYINVT-PAIRSR---TQIFQVYPLTE 153 Query: 176 DFLEKVIVKMFADR 189 + + + I + D+ Sbjct: 154 NDIHQAIQRTLNDK 167 >gi|284031135|ref|YP_003381066.1| ABC transporter-like protein [Kribbella flavida DSM 17836] gi|283810428|gb|ADB32267.1| ABC transporter related protein [Kribbella flavida DSM 17836] Length = 250 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 16/66 (24%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123 R ++GPSGSGKS L + + R T VLL D+DL ++ Sbjct: 41 GRFTAIMGPSGSGKSTLLHCLAGLDR----------------PTSGQVLLGDVDLTRLDE 84 Query: 124 TQLFHI 129 L H+ Sbjct: 85 KALTHL 90 >gi|241247311|ref|XP_002402795.1| ATPase, putative [Ixodes scapularis] gi|215496401|gb|EEC06041.1| ATPase, putative [Ixodes scapularis] Length = 280 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 22/38 (57%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P + VIL GP G+GK+ LA ++++ +T + L Sbjct: 194 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSEL 231 >gi|213404020|ref|XP_002172782.1| AAA family ATPase [Schizosaccharomyces japonicus yFS275] gi|212000829|gb|EEB06489.1| AAA family ATPase [Schizosaccharomyces japonicus yFS275] Length = 718 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 31/50 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S+ST FS A SL S + + ++ Sbjct: 470 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTSKFLGESEKLV 519 >gi|119960933|ref|YP_947567.1| ATPase, AFG1 family protein [Arthrobacter aurescens TC1] gi|119947792|gb|ABM06703.1| putative ATPase, AFG1 family protein [Arthrobacter aurescens TC1] Length = 383 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 12/98 (12%) Query: 67 VILVGPSGSGKSC-LANIWSDKSR----------STRFSNIAKSLDSILIDTRKPVLLED 115 + L G G GK+ LA++W + ++ + + K V +++ Sbjct: 121 IYLDGGFGVGKTHLLASLWHRSPGPKAFGTFVEYTNLVGALSFRKTVEALSSYKLVCIDE 180 Query: 116 IDLLDFNDTQLFH-IINSIHQYDSSLLMTARTFPVSWG 152 +L D DT L ++ + L T+ T P S G Sbjct: 181 FELDDPGDTVLMSRLMRELADAGVKLAATSNTLPGSLG 218 >gi|29825445|gb|AAO92283.1| 26S proteasome regulatory subunit [Dermacentor variabilis] Length = 402 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + + ++ ++ I ++ E Sbjct: 179 PPKGCLLYGPPGTGKTLLARAVASQIEANFLKVVSSAIVDKYIGESARLIRE-------- 230 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 231 ------MFNYARDHQ 239 >gi|119025427|ref|YP_909272.1| hypothetical protein BAD_0409 [Bifidobacterium adolescentis ATCC 15703] gi|118765011|dbj|BAF39190.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703] Length = 699 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 25/62 (40%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 R V+L GP G+GK+ LA + ++ +S + + + + D N Sbjct: 257 RGVLLYGPPGTGKTLLARAIAGEAGVPFYSMAGSDFVEMFVGLGASRVRDLFDEAKKNAP 316 Query: 125 QL 126 + Sbjct: 317 AI 318 >gi|330981392|gb|EGH79495.1| recombination factor protein RarA [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 440 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 38/210 (18%), Positives = 73/210 (34%), Gaps = 32/210 (15%) Query: 57 DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 ++ +I GP G GK+ LA + + S + + A I V + Sbjct: 40 EALEQGALHSMIFWGPPGVGKTTLAKLLAKVSDAHFETVSAVLAGVKEIRQAVEVARQQA 99 Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162 T LF H N Q D +L+ T L SR Sbjct: 100 GQYGKR-TILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154 Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLV 216 A V + D+ L K++ + + RQ+ + A ++ + +++ Sbjct: 155 --ARVYVLKSLDEAALRKLVNRALTEERGLGKRQLALSDGGFAMLMSAAD---GDGRRML 209 Query: 217 DKMDNLA-LSR-GMGITRSLAAEVLKETQQ 244 + ++N + L+ G I L +L ++++ Sbjct: 210 NLLENASDLAEDGSEIDVGLLQSLLGDSRR 239 >gi|301095171|ref|XP_002896687.1| vacuolar protein sorting-associating protein, putative [Phytophthora infestans T30-4] gi|262108826|gb|EEY66878.1| vacuolar protein sorting-associating protein, putative [Phytophthora infestans T30-4] Length = 460 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 12/31 (38%), Positives = 20/31 (64%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF 93 P + ++L GP G+GKS LA + ++ +T F Sbjct: 156 PWKGILLYGPPGTGKSYLAQAVATEADATFF 186 >gi|253577518|ref|ZP_04854831.1| vesicle-fusing ATPase [Paenibacillus sp. oral taxon 786 str. D14] gi|251843058|gb|EES71093.1| vesicle-fusing ATPase [Paenibacillus sp. oral taxon 786 str. D14] Length = 500 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 20/48 (41%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110 P + ++L GP G+GK+ LA + + + + + + Sbjct: 103 PIKGILLTGPPGTGKTLLAKAAAHYTNAVFVAASGSEFVEMYVGVGAS 150 >gi|221108420|ref|XP_002169816.1| PREDICTED: similar to predicted protein, partial [Hydra magnipapillata] Length = 284 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 20/31 (64%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF 93 P R ++L GP G+GK+ +A ++++ + F Sbjct: 233 PPRGILLYGPPGTGKTLMARAVANETGAFFF 263 >gi|207725073|ref|YP_002255470.1| transposase and helper proteins (partial sequence) [Ralstonia solanacearum MolK2] gi|206590303|emb|CAQ37264.1| putative transposase and helper proteins (partial sequence) [Ralstonia solanacearum MolK2] Length = 653 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 47/130 (36%), Gaps = 30/130 (23%) Query: 51 QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110 ++ I+ + V+L+GPSG GK+ +A+ + ++ + +++ Sbjct: 484 ASLAFIERAEN-----VVLLGPSGVGKTHIASALAYRATQAGIKTRFITAADLMMQLATA 538 Query: 111 -------------------VLLEDIDLLDF--NDTQLFHIINSI--HQYDSSLLMTARTF 147 +++++I L F + LF N + ++++T+ Sbjct: 539 RQQNRLREFFNRAVIGPRLLVIDEIGYLPFGREEADLF--FNVVAKRYERGAIVLTSNLP 596 Query: 148 PVSWGVCLPD 157 W D Sbjct: 597 FTQWATAFAD 606 >gi|33861411|ref|NP_892972.1| cell division protein FtsH4 [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33633988|emb|CAE19313.1| cell division protein FtsH4 [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 584 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 39/216 (18%), Positives = 68/216 (31%), Gaps = 55/216 (25%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+L+GP G+GK+ LA + +S S A + + Sbjct: 171 VLLIGPPGTGKTLLAKAIAGESGVPFLSIAASEFVELFVGVGASRVRDLFEKAKEKSPCI 230 Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW---- 151 + +++ID + ND QL ++ +++ A P Sbjct: 231 IFIDEIDSIGRQRGSGIGGGNDEREQTLNQLLTELDGFADNSGIIVIAATNRPDILDSAL 290 Query: 152 ----------GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID-KKLAAY 200 V LPDL R K +V +S P + V + +A R + LA Sbjct: 291 LRPGRFDRKIEVMLPDLDGRKKILSVHSLSKP---LAKDVDLSYWATRTVGFSGADLANL 347 Query: 201 I---VQRMERSLVFAE---KLVDKMDNLALSRGMGI 230 + R + + +D + L I Sbjct: 348 MNESAIHCAREDSKLITYSHIENALDKVTLGLRTSI 383 >gi|254495330|ref|ZP_05108254.1| ATPase related to the helicase subunit of the Holliday junction resolvase [Polaribacter sp. MED152] gi|85819684|gb|EAQ40841.1| ATPase related to the helicase subunit of the Holliday junction resolvase [Polaribacter sp. MED152] Length = 423 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 48/139 (34%), Gaps = 24/139 (17%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS---------------TRFSNIAKSLDSILIDTRK 109 +IL GP G GK+ LANI + +S AK + Sbjct: 40 PSLILWGPPGIGKTTLANIIATESNRPFYTLSAISSGVKDVREVIEKAKKSGGLFTAKNP 99 Query: 110 PVLLEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168 + +++I + L + L+ A T S+ V +P L SR V Sbjct: 100 ILFIDEIHRFSKSQQDSLL----GAVEKGWVTLIGATTENPSFEV-IPALLSR---CQVY 151 Query: 169 KISLPDDDFLEKVIVKMFA 187 ++ D + L ++ + Sbjct: 152 ILNSFDKNDLIALLERAIQ 170 >gi|328850881|gb|EGG00041.1| AAA ATPase [Melampsora larici-populina 98AG31] Length = 745 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 19/34 (55%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 ++L GP G GK+ LA +++S++ S L Sbjct: 479 ILLWGPPGCGKTLLAKAVANESQANFISVKGPEL 512 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P R ++L GP G GK+ LA+ S++ T + + S+ S + + + + D Sbjct: 138 PIRGLLLCGPPGCGKTMLASAISNQLGITLINVSSTSIVSGMSGESEKAIRDIFDQATKQ 197 Query: 123 DTQLF 127 L Sbjct: 198 APCLL 202 >gi|326474867|gb|EGD98876.1| vacuolar sorting ATPase [Trichophyton tonsurans CBS 112818] Length = 434 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 14/80 (17%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + ++L GP G+GKS LA + +++ST FS + L S + + ++ Sbjct: 164 PWKGILLYGPPGTGKSYLAKAVATEAKSTFFSVSSSDLVSKWMGESERLV---------- 213 Query: 123 DTQLFHIINSIHQYDSSLLM 142 QLF N + +++ Sbjct: 214 -KQLF---NMARENKPAIVF 229 >gi|310795052|gb|EFQ30513.1| ATPase [Glomerella graminicola M1.001] Length = 809 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 31/50 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +SRST FS A SL S + + ++ Sbjct: 553 PARGMLLFGPPGTGKTMLARAVATESRSTFFSISASSLTSKYLGESEKLV 602 >gi|303314983|ref|XP_003067499.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta SOWgp] gi|240107169|gb|EER25354.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta SOWgp] Length = 958 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 17/30 (56%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 ++L GP G+GK+ LA + +S +T Sbjct: 687 PGLLLYGPPGTGKTLLAKAVARESGATVLE 716 >gi|197127956|gb|ACH44454.1| putative 26S ATPase complex subunit 4 [Taeniopygia guttata] Length = 440 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 218 PPKGVILYGPPGTGKTLLAKAVANQTSATFXRVVGSELIQKYLGDGPKLVRE 269 >gi|221052024|ref|XP_002257588.1| cell division cycle ATPase [Plasmodium knowlesi strain H] gi|193807418|emb|CAQ37924.1| cell division cycle ATPase, putative [Plasmodium knowlesi strain H] Length = 1132 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 24/141 (17%), Positives = 46/141 (32%), Gaps = 43/141 (30%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILIDT 107 ++ ++L GP G GK+ LA +++ + S N+ D + Sbjct: 877 NKGILLYGPPGCGKTLLAKAIANECNANFISVKGPELLTMWFGESEANVRDLFDKARAAS 936 Query: 108 RKPVLLEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWG-- 152 + ++ID L Q+ I+ I++ + ++ A P Sbjct: 937 PCIIFFDEIDSLAKERNSNNNNDASDRVINQILTEIDGINEKKTIFIIAATNRPDILDKA 996 Query: 153 ------------VCLPDLCSR 161 + LPD SR Sbjct: 997 LTRPGRLDKLIYISLPDYKSR 1017 >gi|156094884|ref|XP_001613478.1| cell division cycle ATPase [Plasmodium vivax SaI-1] gi|148802352|gb|EDL43751.1| cell division cycle ATPase, putative [Plasmodium vivax] Length = 1089 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 24/141 (17%), Positives = 46/141 (32%), Gaps = 43/141 (30%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILIDT 107 ++ ++L GP G GK+ LA +++ + S N+ D + Sbjct: 830 NKGILLYGPPGCGKTLLAKAIANECNANFISVKGPELLTMWFGESEANVRDLFDKARAAS 889 Query: 108 RKPVLLEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWG-- 152 + ++ID L Q+ I+ I++ + ++ A P Sbjct: 890 PCIIFFDEIDSLAKERNSNNNNDASDRVINQILTEIDGINEKKTIFIIAATNRPDILDKA 949 Query: 153 ------------VCLPDLCSR 161 + LPD SR Sbjct: 950 LTRPGRLDKLIYISLPDYKSR 970 >gi|50308283|ref|XP_454142.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49643277|emb|CAG99229.1| KLLA0E04379p [Kluyveromyces lactis] Length = 729 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 30/50 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P R ++L GP G+GK+ LA + +S+ST FS A SL S + + ++ Sbjct: 479 PVRGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTSKYLGESEKLV 528 >gi|56551054|ref|YP_161893.1| Holliday junction DNA helicase RuvB [Zymomonas mobilis subsp. mobilis ZM4] gi|241761368|ref|ZP_04759456.1| Holliday junction DNA helicase RuvB [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260753283|ref|YP_003226176.1| Holliday junction DNA helicase RuvB [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|81820941|sp|Q5NR72|RUVB_ZYMMO RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|56542628|gb|AAV88782.1| Holliday junction DNA helicase RuvB [Zymomonas mobilis subsp. mobilis ZM4] gi|241374275|gb|EER63772.1| Holliday junction DNA helicase RuvB [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552646|gb|ACV75592.1| Holliday junction DNA helicase RuvB [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 347 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 44/202 (21%), Positives = 76/202 (37%), Gaps = 29/202 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSR----STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 V+ GP G GK+ LA I + + +T I KS D + T LED D+L + Sbjct: 55 VLFFGPPGLGKTTLAQIIAREMGVGFRATSGPVIVKSGDLAALLTN----LEDGDVLFID 110 Query: 123 DTQLFH------IINSIHQYDSSLLMTARTFPVSWGVCLPD-----------LCS---RL 162 + + ++ L++ S + LP L S R Sbjct: 111 EIHRLQPVVEEVLYPAMEDRALDLMIGEGPSARSVRIDLPHFTLVGATTRQGLLSTPLRD 170 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 + V++ + L +VI + + I + A I +R + A +L+ ++ + Sbjct: 171 RFGIPVRLQFYSIEELRQVITRAARLLGMEIAPEGAEEIAKRSRGTPRIAGRLLRRVRDF 230 Query: 223 ALSRGMGI-TRSLAAEVLKETQ 243 A G I R +A E L + Sbjct: 231 ADVAGSKIVDRFIADEALNRLE 252 >gi|332673268|gb|AEE70085.1| ATPase [Helicobacter pylori 83] Length = 391 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 32/189 (16%), Positives = 70/189 (37%), Gaps = 25/189 (13%) Query: 65 RVVILVGPSGSGKSCLANIWS--DKSRSTRFSNIAKSLDSILI--------DTRKPVLLE 114 GP G GK+ LA I + + F+ L+ + + + V ++ Sbjct: 38 PHAFFYGPPGVGKTSLAQIIACMLERPILLFNATDFKLEDLRLKLKNYQNTLLKPVVFID 97 Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 + L+ + I + D +L++ A T ++ + + SR + + +++ + Sbjct: 98 ETHRLNKTQQEFLLPI---MEKDHALILGASTQDPNYSLSHA-IRSR---SFIFELTPLN 150 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234 L+K+ K + I Y++ S A L++ +D A I + Sbjct: 151 KSDLDKLCAKALTLLKKQIKPSAKTYLLNN---SAGDARALLNLLDLSA-----KIEDPI 202 Query: 235 AAEVLKETQ 243 E L+ + Sbjct: 203 TLETLQSLR 211 >gi|325983583|ref|YP_004295985.1| IstB domain-containing protein ATP-binding protein [Nitrosomonas sp. AL212] gi|325533102|gb|ADZ27823.1| IstB domain protein ATP-binding protein [Nitrosomonas sp. AL212] Length = 455 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 50/108 (46%), Gaps = 23/108 (21%) Query: 67 VILVGPSGSGKSCLA--------NIWSDKSRSTRFSNIAKSLD-----------SILIDT 107 ++LVG +G+GK+ LA + K R ++A SL+ ++ + Sbjct: 288 LVLVGGTGTGKTHLAIAIGTSGIQHHNKKVRFFSAIDLANSLEQEKSTGKQGRLALRLLQ 347 Query: 108 RKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWG 152 V+L+++ L F+ LFH+++ +++ +S+++T W Sbjct: 348 IDLVILDELGYLPFSQAGGALLFHLLSRLYER-TSVIITTNLAFAEWS 394 >gi|320528953|ref|ZP_08030045.1| Holliday junction DNA helicase RuvB [Selenomonas artemidis F0399] gi|320138583|gb|EFW30473.1| Holliday junction DNA helicase RuvB [Selenomonas artemidis F0399] Length = 344 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 71/183 (38%), Gaps = 15/183 (8%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT-Q 125 V+L GP G GK+ LA I +++ + A +++ L+D D+L ++ + Sbjct: 59 VLLYGPPGLGKTTLAGIIANEMGANFRQTSAPAIERQGDLASLLTNLQDHDVLFIDEIHR 118 Query: 126 LFH-----IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 L H + +++ + +++ P + + L DL K L Sbjct: 119 LSHHVEEILYSAMEDHAIDIII--GKGPSARSIRL-DLAPFTLVGATTKTGA-----LSA 170 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + F Q ++ ++ +ER+ ++ L ++R T +A +LK Sbjct: 171 PLRDRFGI-QTRLEYYTPEALLLIIERTAEILSVTIEHEGALEIARRSRGTPRVANRILK 229 Query: 241 ETQ 243 + Sbjct: 230 RVR 232 >gi|257896971|ref|ZP_05676624.1| AAA ATPase [Enterococcus faecium Com12] gi|293378673|ref|ZP_06624832.1| recombination factor protein RarA [Enterococcus faecium PC4.1] gi|257833536|gb|EEV59957.1| AAA ATPase [Enterococcus faecium Com12] gi|292642713|gb|EFF60864.1| recombination factor protein RarA [Enterococcus faecium PC4.1] Length = 428 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 27/172 (15%), Positives = 66/172 (38%), Gaps = 24/172 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117 +IL GP G+GK+ +A+ + + + R N A + + +LL+++ Sbjct: 42 MILYGPPGTGKTSIASAIAGSTNYAFRMLNAATDSKKELQVVAEEAKMSGTVILLLDEVH 101 Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 LD D L H+ + +L+ A T + P + SR + ++ + Sbjct: 102 RLDKTKQDFLLPHL-----ESGRIILIGATTENPYITIN-PAIRSR---TQIFEVKPLTE 152 Query: 176 DFLEKVIVKMFADRQIFIDKKLAAY---IVQRMERSLV-FAEKLVDKMDNLA 223 ++ + D++ + ++ + + R+ ++ ++ A Sbjct: 153 QDIQLAVKHALKDKERGLGQQAIQLDEEALLHLSRATNGDLRSALNGLELAA 204 >gi|238879861|gb|EEQ43499.1| 26S protease subunit RPT4 [Candida albicans WO-1] Length = 428 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + + + A ++ I ++ E Sbjct: 205 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIRE 256 >gi|296005359|ref|XP_001349843.2| 26S proteasome regulatory subunit 7, putative [Plasmodium falciparum 3D7] gi|225631944|emb|CAD52250.2| 26S proteasome regulatory subunit 7, putative [Plasmodium falciparum 3D7] Length = 420 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 22/144 (15%), Positives = 49/144 (34%), Gaps = 45/144 (31%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V+L GP G+GK+ A ++++ + I L + ++ Sbjct: 195 PPKGVLLYGPPGTGKTLTARAIANRTDACFICVIGSELVQKYVGEGARMVRELFQMAKSK 254 Query: 113 ------LEDIDLLD---FNDTQ---------LFHIINSI----HQYDSSLLMTARTF--- 147 ++++D + +++ + I+N + ++ + +LM Sbjct: 255 KACILFIDEVDAIGGSRGDESAHGDHEVQRTMLEIVNQLDGFDNRGNIKVLMATNRPDTL 314 Query: 148 ------P----VSWGVCLPDLCSR 161 P LPDL R Sbjct: 315 DSALVRPGRIDRRIEFSLPDLEGR 338 >gi|222099902|ref|YP_002534470.1| Holliday junction ATP-dependent DNA helicase ruvB [Thermotoga neapolitana DSM 4359] gi|221572292|gb|ACM23104.1| Holliday junction ATP-dependent DNA helicase ruvB [Thermotoga neapolitana DSM 4359] Length = 358 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 6/78 (7%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G GK+ LA+I + + ++ L LE D+L ++ Sbjct: 78 ILLAGPPGLGKTTLAHIIASEMQTNIHITSGPVLAKQGDMAAILTSLERGDVLFIDEI-- 135 Query: 127 FHIINSIHQYDSSLLMTA 144 H +N + +L +A Sbjct: 136 -HRLNKAVEE---VLYSA 149 >gi|170728960|ref|YP_001762986.1| ATPase central domain-containing protein [Shewanella woodyi ATCC 51908] gi|169814307|gb|ACA88891.1| AAA ATPase central domain protein [Shewanella woodyi ATCC 51908] Length = 446 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 37/215 (17%), Positives = 70/215 (32%), Gaps = 46/215 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK----------------P 110 ++L GP G GK+ LA + + +T + + + + I + Sbjct: 203 ILLFGPPGCGKTLLARATAGECNATFINVVISDILDMYIGESEKKLHAIFEQARQNTPSV 262 Query: 111 VLLEDIDLLDFNDTQ-------------LFHIINSIHQYDSSLLMTARTFPVSWG--VCL 155 + ++I+ L L + L++ A P + Sbjct: 263 IFFDEIESLAAKRQHTREATSAKLVSQFLSELDGFAQNNHGVLILGATNVPWALDPAFRR 322 Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR--QIFIDKKLAAYIVQRMERSLVFAE 213 P R VV I+ PD D ++ + DR +D + A + S Sbjct: 323 P---GRFD--RVVFIAPPDVDARTDILKGLLKDRPGGESVDAQKIARLTSGF--SGADLM 375 Query: 214 KLVD-KMDNL---ALSRGM--GITRSLAAEVLKET 242 LV+ +D ++ G + ++ E LKE Sbjct: 376 NLVETAVDEAIDHSIESGEEVPLNQTFVKEALKEV 410 >gi|94309429|ref|YP_582639.1| IstB-like ATP-binding protein [Cupriavidus metallidurans CH34] gi|94312295|ref|YP_585505.1| IstB-like ATP-binding protein [Cupriavidus metallidurans CH34] gi|93353281|gb|ABF07370.1| IstB-like ATP binding protein ISRme4 [Cupriavidus metallidurans CH34] gi|93356147|gb|ABF10236.1| IstB-like ATP binding protein ISRme4 [Cupriavidus metallidurans CH34] Length = 261 Score = 40.9 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 58/144 (40%), Gaps = 24/144 (16%) Query: 32 FPRCLGISRDDLLVHSAIEQAVRLIDS-WPSWPSRVVILVGPSGSGKSCLA-----NIWS 85 FP ++ D A E VR + + V+LVG G+GK+ L Sbjct: 65 FPAYRDLTGFDFSCSEANEALVRQLHRCEFLESAHNVVLVGGPGTGKTHLGTAIGVQAVE 124 Query: 86 DKSRSTRFSNIAKSLDSILIDT--------------RKPVLLEDIDLLDFND---TQLFH 128 R RF + + ++++ ++ V+L+++ L F+ LFH Sbjct: 125 HHHRRVRFFSTVELVNALELEKVSGKPGHLATRLMYADLVILDELGYLPFSQVGGALLFH 184 Query: 129 IINSIHQYDSSLLMTARTFPVSWG 152 +I+ +++ +SL++T W Sbjct: 185 LISKLYER-TSLIITTNLSFGEWS 207 >gi|331085433|ref|ZP_08334518.1| hypothetical protein HMPREF0987_00821 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330407671|gb|EGG87169.1| hypothetical protein HMPREF0987_00821 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 280 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 38/104 (36%), Gaps = 18/104 (17%) Query: 67 VILVGPSGSGKSCLANIWSDK----------SRSTRFSNIAKSLDSI-----LIDTRKPV 111 +L GP G+GKS +A ++ + + L+ + + + Sbjct: 113 FLLWGPIGTGKSYIAGCIANALLNQEITVKMTNFNTIIDDMFPLEDKTEYINALAKYELL 172 Query: 112 LLEDIDLLDFNDTQL---FHIINSIHQYDSSLLMTARTFPVSWG 152 +L+D+ ++ L F II+ ++ L++T Sbjct: 173 ILDDLGTERSSEYALGIVFSIIDRRYRSGRPLIVTTNLPIKQLK 216 >gi|325983580|ref|YP_004295982.1| IstB domain-containing protein ATP-binding protein [Nitrosomonas sp. AL212] gi|325533099|gb|ADZ27820.1| IstB domain protein ATP-binding protein [Nitrosomonas sp. AL212] Length = 458 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 50/108 (46%), Gaps = 23/108 (21%) Query: 67 VILVGPSGSGKSCLA--------NIWSDKSRSTRFSNIAKSLD-----------SILIDT 107 ++LVG +G+GK+ LA + K R ++A SL+ ++ + Sbjct: 291 LVLVGGTGTGKTHLAIAIGTSGIQHHNKKVRFFSAIDLANSLEQEKSTGKQGRLALRLLQ 350 Query: 108 RKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWG 152 V+L+++ L F+ LFH+++ +++ +S+++T W Sbjct: 351 IDLVILDELGYLPFSQAGGALLFHLLSRLYER-TSVIITTNLAFAEWS 397 >gi|322488417|emb|CBZ23663.1| conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 4873 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 2/63 (3%) Query: 50 EQAVRLIDSWPSW--PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107 A L++ + SW R V+LVGP SGK+ L W+ S S + Sbjct: 1637 AAADALLERFTSWMNVHRRVLLVGPPFSGKTRLWRTWAGSQLPLIVSMSLISAADFYGTS 1696 Query: 108 RKP 110 P Sbjct: 1697 TDP 1699 >gi|288800898|ref|ZP_06406355.1| ATPase, AAA family [Prevotella sp. oral taxon 299 str. F0039] gi|288332359|gb|EFC70840.1| ATPase, AAA family [Prevotella sp. oral taxon 299 str. F0039] Length = 425 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 39/203 (19%), Positives = 68/203 (33%), Gaps = 40/203 (19%) Query: 65 RVVILVGPSGSGKSCLANIWSDK------SRSTRFSNIAKSLDSILIDTRKPVLLEDIDL 118 IL GP G GK+ LA I S + S S + + + I T++ + + Sbjct: 41 PSFILWGPPGVGKTTLATIISHTIDVPFYTLSAVTSGVKEVREVIDKATKERFFSNNAPI 100 Query: 119 LDFNDTQLFHIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 L ++ H + + L+ A T S+ V P L SR + Sbjct: 101 LFIDEI---HRFSKSQQDSLLGAVEKGVVTLIGATTENPSFEVIRP-LLSR---CQTYIL 153 Query: 171 SLPDDDFLEKVIVKM------FADRQIFI--DKKLAAYIVQRMERSLVFAEKLVDKM--- 219 + LE ++ + R I + L + S A KL++ + Sbjct: 154 QPLSKNDLEALLQRAITEDVELQQRNIELRETDALLHF-------SGGDARKLLNILELV 206 Query: 220 -DNLALSRGMGITRSLAAEVLKE 241 D + IT + L++ Sbjct: 207 VDAFVGDEKVIITNDFVKQCLQQ 229 >gi|170034396|ref|XP_001845060.1| 26S protease regulatory subunit S10B [Culex quinquefasciatus] gi|167875693|gb|EDS39076.1| 26S protease regulatory subunit S10B [Culex quinquefasciatus] Length = 393 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + + ++ ++ I ++ E Sbjct: 170 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 221 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 222 ------MFNYARDHQ 230 >gi|146175214|ref|XP_001470868.1| metalloprotease m41 ftsh [Tetrahymena thermophila] gi|146144688|gb|EDK31554.1| metalloprotease m41 ftsh [Tetrahymena thermophila SB210] Length = 708 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 23/48 (47%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 ++LVGP G+GK+ LA + ++ + F D + + + E Sbjct: 313 ILLVGPPGTGKTLLARALAGEAGCSFFYKSGSEFDEMFVGVGASRVRE 360 >gi|162605898|ref|XP_001713464.1| cell division cycle protein 48 homolog [Guillardia theta] gi|13794396|gb|AAK39773.1|AF083031_130 cell division cycle protein 48 homolog [Guillardia theta] Length = 752 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 35/74 (47%), Gaps = 16/74 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R V++ GPSG GK+ +A ++++ + + SN+ K+ D + Sbjct: 216 PPRGVLMYGPSGCGKTLIAKAVANETGAFLYSINGPEIMSKLAGESESNLKKAFDEAEKN 275 Query: 107 TRKPVLLEDIDLLD 120 + + +++ID + Sbjct: 276 SPSIIFIDEIDSIA 289 Score = 39.0 bits (90), Expect = 0.53, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 19/32 (59%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 PS+ V+ GP G GK+ LA +++ ++ S Sbjct: 489 PSKGVLFYGPPGCGKTLLAKAIANECQANFIS 520 >gi|321478112|gb|EFX89070.1| hypothetical protein DAPPUDRAFT_233773 [Daphnia pulex] Length = 285 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 45/133 (33%), Gaps = 23/133 (17%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P R V++ GP G GK+ LA + + + + + + D D+ Sbjct: 120 PPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMTGADRDV---- 175 Query: 123 DTQLFHIINSI----HQYDSSLLMTARTF----PVSW---------GVCLPDLCS-RLK- 163 L ++N + + ++M P LPD RL Sbjct: 176 QRILLELLNQMDGFEQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVF 235 Query: 164 AATVVKISLPDDD 176 A K+++ D++ Sbjct: 236 ATITAKMNVSDEE 248 >gi|312373685|gb|EFR21384.1| hypothetical protein AND_17121 [Anopheles darlingi] Length = 392 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + + ++ ++ I ++ E Sbjct: 169 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 220 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 221 ------MFNYARDHQ 229 >gi|296242724|ref|YP_003650211.1| CDC48 subfamily AAA family ATPase [Thermosphaera aggregans DSM 11486] gi|296095308|gb|ADG91259.1| AAA family ATPase, CDC48 subfamily [Thermosphaera aggregans DSM 11486] Length = 740 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 19/38 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P + ++L GP G GK+ LA + +S + + + Sbjct: 498 PPKGILLYGPPGCGKTLLAKAVATESGANFIAVRGAEI 535 Score = 39.7 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 9/31 (29%), Positives = 19/31 (61%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF 93 P + ++L GP G+GK+ LA ++++ + Sbjct: 219 PPKGILLYGPPGTGKTLLAKALANEANAYFI 249 >gi|257051455|ref|YP_003129288.1| proteasome-activating nucleotidase [Halorhabdus utahensis DSM 12940] gi|256690218|gb|ACV10555.1| 26S proteasome subunit P45 family [Halorhabdus utahensis DSM 12940] Length = 403 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 29/65 (44%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P V+L GP G+GK+ LA ++++ +T L I ++ + +L + Sbjct: 181 PPSGVLLHGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLFELARQH 240 Query: 123 DTQLF 127 + + Sbjct: 241 EPSVL 245 >gi|255935363|ref|XP_002558708.1| Pc13g02690 [Penicillium chrysogenum Wisconsin 54-1255] gi|211583328|emb|CAP91338.1| Pc13g02690 [Penicillium chrysogenum Wisconsin 54-1255] Length = 462 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 22/160 (13%), Positives = 53/160 (33%), Gaps = 38/160 (23%) Query: 70 VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113 GP G+GK+ LA + ++ +T L + I ++ + Sbjct: 248 YGPPGTGKTLLARACAAETNATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPSIIFI 307 Query: 114 EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158 +++D + + ++N D ++ A L L Sbjct: 308 DELDAVGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRIKVLAATNRVDVLDPAL--L 365 Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 S RL ++ LP+++ ++ R++ ++ + Sbjct: 366 RSGRLD--RKIEFPLPNEEARANILQ--IHSRKMSVEDSV 401 >gi|147920787|ref|YP_685407.1| cell division cycle protein 48 [uncultured methanogenic archaeon RC-I] gi|110620803|emb|CAJ36081.1| cell division cycle protein 48 [uncultured methanogenic archaeon RC-I] Length = 743 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 19/32 (59%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + ++L GP G+GK+ LA + +S + + Sbjct: 496 PPKGIVLYGPPGTGKTLLARAVAGESEANFIN 527 Score = 38.2 bits (88), Expect = 1.1, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 20/32 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + V+L GP G+GK+ LA +++ + +S Sbjct: 225 PPKGVLLHGPPGTGKTLLAKAVANECGAEFYS 256 >gi|94991276|ref|YP_599376.1| recombination factor protein RarA [Streptococcus pyogenes MGAS10270] gi|94544784|gb|ABF34832.1| ATPase, AAA family [Streptococcus pyogenes MGAS10270] Length = 422 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 64/167 (38%), Gaps = 24/167 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST---------RFSNIAKSLDSILIDTRKPVLLEDID 117 +IL GP G GK+ +A+ + +R + + + +LL++I Sbjct: 42 MILYGPPGIGKTSIASAIAGTTRYAFRTFNATIDSKKRLQEIAEEAKFSGGLVLLLDEIH 101 Query: 118 LLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDD 176 LD L ++ + + +++ A T + V P + SR + ++ ++ Sbjct: 102 RLDKIKQDFLLPLL----ENGTIIMIGATTENPFFSVT-PAIRSR---VQIFELEPLSNE 153 Query: 177 FLEKVIVKMFAD--RQ----IFIDKKLAAYIVQRMERSLVFAEKLVD 217 ++ I +D R + ID + +IV L A +D Sbjct: 154 DIKTAIQLAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLD 200 >gi|327329237|gb|EGE70997.1| cell division protein FtsH [Propionibacterium acnes HL103PA1] Length = 717 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 50/165 (30%), Gaps = 47/165 (28%) Query: 67 VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110 V+L GP G+GK+ LA + ++ S + + Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAPAI 262 Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + D + L + ++ +L+ A P L Sbjct: 263 IFIDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDVRGGVILIAATNRPDVLDPAL 322 Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVK 184 PDL RLK V P DD L + + Sbjct: 323 LRPGRFDRQVAVEAPDLDGRLKILKVHAHGKPMADDVDLASIARR 367 >gi|332715388|ref|YP_004442854.1| IS21 family transposase [Agrobacterium sp. H13-3] gi|325062073|gb|ADY65763.1| IS21 family transposase [Agrobacterium sp. H13-3] Length = 264 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 58/154 (37%), Gaps = 34/154 (22%) Query: 32 FPRCLGISRDDLLVHSAIEQAVR------LIDSWPSWPSRVVILVGPSGSGKSCLA---- 81 FP IS D E VR ID + ++LVG G+GK+ +A Sbjct: 69 FPAYKDISGYDFAASEINEATVRQLHRCEFIDGAQN-----IVLVGGPGTGKTHVATALG 123 Query: 82 -NIWSDKSRSTRFSNIAKSLDSILIDTRK------PVLLEDIDLLDFND----------- 123 R RF + + ++++ + K L +DLL ++ Sbjct: 124 VQAIEHHRRKVRFFSTIELVNALEQEKAKGKAGQIAEALVRLDLLILDELGYLPFSTSGG 183 Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 LFH+++ +++ +S+++T W D Sbjct: 184 ALLFHLLSKLYER-TSVVITTNLSFSEWATVFGD 216 >gi|319651670|ref|ZP_08005797.1| ATPase [Bacillus sp. 2_A_57_CT2] gi|317396737|gb|EFV77448.1| ATPase [Bacillus sp. 2_A_57_CT2] Length = 421 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 27/179 (15%), Positives = 59/179 (32%), Gaps = 30/179 (16%) Query: 67 VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKP-------VLLEDID 117 +IL GP G GK+ +A+ + K + + + + + + +LL+++ Sbjct: 43 MILYGPPGIGKTSIASAIAGSTKYAFRTLNAVTNNKKDMEVVAAEAKMSGKVILLLDEVH 102 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISL--P 173 LD + S L+ T + P + SR + ++ Sbjct: 103 RLDKGKQDFLLPY---LENGSITLIGATTSNPYHAIN---PAIRSR---CQIFELKPLSA 153 Query: 174 DD---DFLEKVIVKM--FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 DD ++ K +RQ + ++ S ++ ++ LS Sbjct: 154 DDIKKALTRALLDKERGLGNRQTEVTDDALTHLATA---SNGDVRSSLNALELAVLSTK 209 >gi|316965784|gb|EFV50458.1| putative ATPase, AAA family [Trichinella spiralis] Length = 781 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 10/25 (40%), Positives = 15/25 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDK 87 P R +L GP G GK+ LA+ + + Sbjct: 111 PPRGFLLYGPPGCGKTLLAHAIAGE 135 Score = 39.0 bits (90), Expect = 0.57, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 22/46 (47%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 ++L GP G GK+ LA +++S S L ++ + + + Sbjct: 442 ILLFGPPGCGKTLLAKAIANESGINFISVKGPELLNMYVGESERAV 487 >gi|282853315|ref|ZP_06262652.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes J139] gi|282582768|gb|EFB88148.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes J139] gi|314982855|gb|EFT26947.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL110PA3] gi|315091173|gb|EFT63149.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL110PA4] Length = 717 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 50/165 (30%), Gaps = 47/165 (28%) Query: 67 VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110 V+L GP G+GK+ LA + ++ S + + Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAPAI 262 Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + D + L + ++ +L+ A P L Sbjct: 263 IFIDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDVRGGVILIAATNRPDVLDPAL 322 Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVK 184 PDL RLK V P DD L + + Sbjct: 323 LRPGRFDRQIAVEAPDLDGRLKILKVHAHGKPMADDVDLASIARR 367 >gi|255721295|ref|XP_002545582.1| 26S protease subunit RPT4 [Candida tropicalis MYA-3404] gi|240136071|gb|EER35624.1| 26S protease subunit RPT4 [Candida tropicalis MYA-3404] Length = 433 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + + + A ++ I ++ E Sbjct: 210 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIRE 261 >gi|239620734|ref|ZP_04663765.1| recombination factor protein RarA [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312132345|ref|YP_003999684.1| atpase for holliday junction resolvase [Bifidobacterium longum subsp. longum BBMN68] gi|322689648|ref|YP_004209382.1| recombination factor protein RarA [Bifidobacterium longum subsp. infantis 157F] gi|322691609|ref|YP_004221179.1| recombination factor protein RarA [Bifidobacterium longum subsp. longum JCM 1217] gi|239516310|gb|EEQ56177.1| recombination factor protein RarA [Bifidobacterium longum subsp. infantis CCUG 52486] gi|311773948|gb|ADQ03436.1| ATPase for Holliday junction resolvase [Bifidobacterium longum subsp. longum BBMN68] gi|320456465|dbj|BAJ67087.1| recombination factor protein RarA [Bifidobacterium longum subsp. longum JCM 1217] gi|320460984|dbj|BAJ71604.1| recombination factor protein RarA [Bifidobacterium longum subsp. infantis 157F] Length = 459 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 34/144 (23%), Positives = 56/144 (38%), Gaps = 28/144 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 VIL GP G GK+ LA I + +S ++ K + +L + ++ Sbjct: 63 VILFGPPGVGKTTLATIVAGQSGRVFEELSAVTSGVKDVRDVLTRAHERLV------SRG 116 Query: 122 NDTQLF--HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVK 169 +T LF + +LL + A T S+ + P L SR + VVK Sbjct: 117 QETVLFIDEVHRFSKSQQDALLPAVENRDVTFIGATTENPSFSIIKP-LLSR---SVVVK 172 Query: 170 ISLPD-DDFLEKVIVKMFADRQIF 192 + + D +E V + DR + Sbjct: 173 LESLEPDQLIELVQRALTDDRGLR 196 >gi|255714923|ref|XP_002553743.1| KLTH0E06006p [Lachancea thermotolerans] gi|238935125|emb|CAR23306.1| KLTH0E06006p [Lachancea thermotolerans] Length = 819 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P+ V+ L GP G GK+ LA +++SR+ S Sbjct: 556 PAGVL-LWGPPGCGKTLLAKAVANESRANFIS 586 >gi|225452594|ref|XP_002281006.1| PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] Length = 501 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 12/93 (12%) Query: 41 DDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRF------- 93 DDL+ S E+ I +W + L GP G+GKS + + ++ + Sbjct: 262 DDLIAFSKAEEFYARIGR--AWKRGYL-LYGPPGTGKSTMISAMANLLGYDVYDLELTSV 318 Query: 94 -SNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125 N I I +R +++EDID ++ + Sbjct: 319 KDNTELRRLLIEISSRSIIVIEDID-CSLDEEE 350 >gi|219123158|ref|XP_002181897.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217406498|gb|EEC46437.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 550 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 1/50 (2%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+ V+ L GP G GK+ LA + +S + S L + + + Sbjct: 314 PAGVM-LYGPPGCGKTLLAKAIAHESGANFISVKGPELLDKYVGESEKAV 362 Score = 39.4 bits (91), Expect = 0.41, Method: Composition-based stats. Identities = 12/27 (44%), Positives = 17/27 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSR 89 P R V+L GP G+GK+ LAN + + Sbjct: 33 PPRGVLLRGPPGTGKTHLANAVAGQLG 59 >gi|212529968|ref|XP_002145141.1| cell division control protein Cdc48 [Penicillium marneffei ATCC 18224] gi|210074539|gb|EEA28626.1| cell division control protein Cdc48 [Penicillium marneffei ATCC 18224] Length = 822 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 49/121 (40%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 255 PPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 314 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + + ++M A P S Sbjct: 315 SPAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNIVVMAATNRPNSIDPA 374 Query: 155 L 155 L Sbjct: 375 L 375 >gi|195588464|ref|XP_002083978.1| GD14011 [Drosophila simulans] gi|194195987|gb|EDX09563.1| GD14011 [Drosophila simulans] Length = 611 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%) Query: 54 RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 L+ S + V+L GP G GK+ LA ++++ S L ++ + + + Sbjct: 353 ALVSRAASVAVKRVLLCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESERAV 411 Score = 39.4 bits (91), Expect = 0.50, Method: Composition-based stats. Identities = 12/25 (48%), Positives = 16/25 (64%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDK 87 PSR ++L GP G GK+ LA S + Sbjct: 174 PSRGLLLHGPPGCGKTFLARAISGQ 198 >gi|118577019|ref|YP_876762.1| AAA ATPase [Cenarchaeum symbiosum A] gi|118195540|gb|ABK78458.1| AAA ATPase [Cenarchaeum symbiosum A] Length = 709 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 47/119 (39%), Gaps = 28/119 (23%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTRK--- 109 R V+L GP G+GK+ LA + ++ + + + L + + + Sbjct: 212 RGVLLYGPPGTGKTLLAKAVAGETNANFSYIGGPEIMGKYYGESEERLREMFREAEENAP 271 Query: 110 -PVLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + ++ +QL +++ + + +++ A P S L Sbjct: 272 SIIFIDEIDSIAPKRDEVSGELEKRIVSQLLSLMDGMTRRGKVVVIAATNRPDSIDPAL 330 >gi|15790472|ref|NP_280296.1| cell division cycle protein [Halobacterium sp. NRC-1] gi|169236208|ref|YP_001689408.1| AAA-type ATPase (transitional ATPase homolog) [Halobacterium salinarum R1] gi|10580970|gb|AAG19776.1| cell division cycle protein [Halobacterium sp. NRC-1] gi|167727274|emb|CAP14060.1| AAA-type ATPase (transitional ATPase homolog) [Halobacterium salinarum R1] Length = 759 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 37/211 (17%), Positives = 70/211 (33%), Gaps = 46/211 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILIDTRKP 110 V+L GP G+GK+ LA ++++ S S + + + + Sbjct: 506 VLLYGPPGTGKTLLAKAVANEANSNFISVKGPELLNKYVGESEKGVREVFEKARSNAPTV 565 Query: 111 VLLEDIDLLDFND--------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156 V ++ID + +QL ++ I + +++ P L Sbjct: 566 VFFDEIDAIAGQRGRATSDSGVGERVVSQLLTELDGIEALEDVVVVATSNRPDLIDDAL- 624 Query: 157 DLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215 L RL + + +PD D ++ D+ + D L + QRM+ + Sbjct: 625 -LRPGRLD--RHIHVPVPDADARRAILDVHTRDKPLADDVDL-DVVAQRMDGFVGA---- 676 Query: 216 VDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 D AL T + E + D Sbjct: 677 ----DVEALV--REATMNATREFINSVDPAD 701 >gi|268574816|ref|XP_002642387.1| C. briggsae CBR-YMEL-1 protein [Caenorhabditis briggsae] gi|187025389|emb|CAP35857.1| CBR-YMEL-1 protein [Caenorhabditis briggsae AF16] Length = 670 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 25/53 (47%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 V+LVGP G+GK+ LA + +++ F D +L+ + + D Sbjct: 231 VLLVGPPGTGKTLLARAIAGEAQVPFFHTAGSEFDEVLVGQGARRVRDLFDKA 283 >gi|85717685|ref|ZP_01048622.1| putative transposase [Nitrobacter sp. Nb-311A] gi|85695508|gb|EAQ33429.1| putative transposase [Nitrobacter sp. Nb-311A] Length = 251 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 22/110 (20%) Query: 64 SRVVILVGPSGSGKSCLANIWS-------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 R V+LVG +G+GK+ LA + + R ++ L+ + R+ L E + Sbjct: 62 QRNVVLVGGTGTGKTHLAIAIARSCIRSGARGRFYNVVDLVNRLEIETRNGRQGRLAEHL 121 Query: 117 ---DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 D + ++ LFH+++ +++ +S+++T W Sbjct: 122 TRMDFIVLDELGYLPFAQSGGQLLFHLVSRLYER-ASVIVTTNLAFGEWP 170 >gi|318608123|emb|CBY78097.1| ISPsy4, transposition helper protein [Yersinia enterocolitica subsp. palearctica Y11] Length = 241 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 21/107 (19%) Query: 65 RVVILVGPSGSGKSCLANI----WSDKSRSTRFSNIAKSLDSILIDTRK----------- 109 R +I VG G+GK+ LA + RF N+ ++ + +D Sbjct: 99 RNIIFVGGPGTGKTHLATALGINAATNGFKVRFWNVLDLVNKLELDKESKQFKLTNQLTK 158 Query: 110 --PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSW 151 ++L+D+ L F+ LFH+I+ +H++ +S+++T W Sbjct: 159 LDLIVLDDLGYLPFSQKGGALLFHLISQLHEH-TSIMITTNLAFSEW 204 >gi|260426610|ref|ZP_05780589.1| recombination factor protein RarA [Citreicella sp. SE45] gi|260421102|gb|EEX14353.1| recombination factor protein RarA [Citreicella sp. SE45] Length = 437 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 36/204 (17%), Positives = 71/204 (34%), Gaps = 27/204 (13%) Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDID 117 S ++L GP G GK+ +A + +D + + S I + + Sbjct: 51 ASGALSSLVLWGPPGVGKTTIARLLADATDLHFVQISAIFTGVPELRKVFEAA----RHR 106 Query: 118 LLDFNDTQLF----HIINSIHQYD-------SSLLM---TARTFPVSWGVCLPDLCSRLK 163 + T LF H N Q ++L+ T L SR + Sbjct: 107 RTNGQGTLLFVDEIHRFNKAQQDGFLPHMEDGTILLVGATTENPSFELNAA---LLSRAQ 163 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + ++SL D + L + K R + +D +++ + A L++++ +A Sbjct: 164 VLVLERLSLADLERLAQRAEKELG-RALPLDGAAREALLEMADGDGRAALNLIEQV--MA 220 Query: 224 LSRGMGI-TRSLAAEVLKETQQCD 246 + T L +++ Q D Sbjct: 221 WKTDAKLDTAQLTRRLMRRAAQYD 244 >gi|256822345|ref|YP_003146308.1| AAA ATPase central domain-containing protein [Kangiella koreensis DSM 16069] gi|256795884|gb|ACV26540.1| AAA ATPase central domain protein [Kangiella koreensis DSM 16069] Length = 451 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 58/183 (31%), Gaps = 33/183 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124 +I GP G+GK+ LA + + S + + A I +++ T Sbjct: 54 LIFWGPPGTGKTTLARLIAQSSNAHFITISAVLAGVKDIRA----AVDEARQYQSQGKPT 109 Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N Q D +L T L SR A V + Sbjct: 110 ILFVDEVHRFNKAQQDAFLPYVEDGTLTFIGATTENPSFELNNA---LLSR---ARVFVL 163 Query: 171 SLPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + L+K+I + D + I ++V + ++ LA Sbjct: 164 KDLSETALDKLISRALTDEELGLGKYHLSIADDSRKHLVDAADGDGRRLLNFLELASELA 223 Query: 224 LSR 226 L++ Sbjct: 224 LAK 226 >gi|225027995|ref|ZP_03717187.1| hypothetical protein EUBHAL_02264 [Eubacterium hallii DSM 3353] gi|224954709|gb|EEG35918.1| hypothetical protein EUBHAL_02264 [Eubacterium hallii DSM 3353] Length = 445 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 59/170 (34%), Gaps = 24/170 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +I GP G+GK+ LA + ++ + + A + ++ +D + T L Sbjct: 59 LIFYGPPGTGKTTLAKVIANTTSANFVQMNATTSGKKDMEQAVSQA-KDAFGMYGKRTIL 117 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N + + +L+ A T + V L SR + + + Sbjct: 118 FIDEIHRFNKAQQDYLLPFVEDGTVILIGATTENPYFEVNSA-LLSR---SQIFHLEPLA 173 Query: 175 DDFLEKVI-------VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 + + +++ + I ++ A +I + A V+ Sbjct: 174 ESDIYRLVKTAVEDNERGMGAYGAVITEEAARFIAEMAGGDARRALNAVE 223 >gi|170595872|ref|XP_001902553.1| transitional endoplasmic reticulum ATPase TER94 [Brugia malayi] gi|158589713|gb|EDP28598.1| transitional endoplasmic reticulum ATPase TER94, putative [Brugia malayi] Length = 351 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA + + ++ S L ++ + + + D Sbjct: 55 PSRGVLFYGPPGCGKTLLAKAIAHECQANFISIKGPELLTMWFGESEANVRDVFDKA 111 >gi|99082319|ref|YP_614473.1| Type I secretion system ATPase, PrtD [Ruegeria sp. TM1040] gi|99038599|gb|ABF65211.1| Type I secretion system ATPase PrtD [Ruegeria sp. TM1040] Length = 587 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 3/65 (4%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + ++GPSGSGKS LA + + + R + LD + P +L D Sbjct: 359 PGEAIGVIGPSGSGKSTLARV---LTGAWRAAAGTVRLDGAALSQYDPSVLGDHIGYLPQ 415 Query: 123 DTQLF 127 +LF Sbjct: 416 RVELF 420 >gi|58259205|ref|XP_567015.1| helicase [Cryptococcus neoformans var. neoformans JEC21] gi|134107345|ref|XP_777557.1| hypothetical protein CNBA6790 [Cryptococcus neoformans var. neoformans B-3501A] gi|50260251|gb|EAL22910.1| hypothetical protein CNBA6790 [Cryptococcus neoformans var. neoformans B-3501A] gi|57223152|gb|AAW41196.1| helicase, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 756 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Query: 61 SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 PS V+ L GP G GK+ LA +++SR+ S L + + + + Sbjct: 439 DAPSGVL-LWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAV 489 >gi|296417747|ref|XP_002838514.1| hypothetical protein [Tuber melanosporum Mel28] gi|295634453|emb|CAZ82705.1| unnamed protein product [Tuber melanosporum] Length = 432 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 23/38 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P R ++L GP G+GKS LA + ++ ST FS + L Sbjct: 162 PWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 199 >gi|312113415|ref|YP_004011011.1| ATPase AAA [Rhodomicrobium vannielii ATCC 17100] gi|311218544|gb|ADP69912.1| AAA ATPase central domain protein [Rhodomicrobium vannielii ATCC 17100] Length = 462 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 70/198 (35%), Gaps = 43/198 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS-NIAKSLDSILIDTRKPV-LLEDIDLLD 120 ++L GP G GK+ +A + +S + S N +D + K + +L D D Sbjct: 218 AGGNILLYGPPGCGKTLVARATAGESDARFLSVNPEDLIDKYPGEAEKRLRVLFDEARSD 277 Query: 121 FNDTQLFHIINSIHQYDSS--------------------------LLMTARTFPVSWGVC 154 F + + Q S L++ A P W + Sbjct: 278 TPAILFFDEFDVVSQRAKSSRESVSALVSAFASEIDGTQRNNSGVLVIVASNAP--WHLD 335 Query: 155 LPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER-----S 208 S R+++ + + PD + +K++ K A I + ++ R+ R S Sbjct: 336 RALFRSMRMQS--LFFVPPPDYEARKKILTKAIA--GIPGAEAVS---ADRIARKTDGFS 388 Query: 209 LVFAEKLVDKMDNLALSR 226 L D + N +L++ Sbjct: 389 GADLRALADLVSNASLTK 406 >gi|258621724|ref|ZP_05716755.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|258585955|gb|EEW10673.1| conserved hypothetical protein [Vibrio mimicus VM573] Length = 449 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 65/199 (32%), Gaps = 38/199 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G+GK+ LA + ++ + + A + I E+ L T L Sbjct: 54 MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAREN--KLSGRRTIL 111 Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172 F H N Q D ++ T L SR A V K++ Sbjct: 112 FVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKLTS 165 Query: 173 PDDDFLEKVIVKMFADRQIFID-------KKLAAYIV------QRMERSLVFAEKLVDKM 219 + + + + + AD + + + + RM + + + + Sbjct: 166 LNQQEILQALHQAIADTECGLGKVAAVFADNVLDRLAELVNGDARMSLNYLELLYDMARE 225 Query: 220 DNLALSRGMGITRSLAAEV 238 D+ I L AEV Sbjct: 226 DD---QGRKQIDLPLLAEV 241 >gi|306526251|sp|P54813|YME1_CAEEL RecName: Full=ATP-dependent zinc metalloprotease YME1 homolog gi|224490507|emb|CAA88955.2| C. elegans protein M03C11.5, partially confirmed by transcript evidence [Caenorhabditis elegans] Length = 723 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 25/53 (47%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 V+LVGP G+GK+ LA + +++ F D +L+ + + D Sbjct: 284 VLLVGPPGTGKTLLARAIAGEAQVPFFHTAGSEFDEVLVGQGARRVRDLFDKA 336 >gi|195428164|ref|XP_002062144.1| GK17377 [Drosophila willistoni] gi|194158229|gb|EDW73130.1| GK17377 [Drosophila willistoni] Length = 1001 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 15/25 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDK 87 PSR ++L GP G GK+ LA + Sbjct: 331 PSRGLLLHGPPGCGKTYLARAIGGQ 355 Score = 39.4 bits (91), Expect = 0.43, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 PS V+ L GP G GK+ LA ++++ S L ++ + + + Sbjct: 745 PSGVL-LCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESERAV 793 >gi|156841249|ref|XP_001643999.1| hypothetical protein Kpol_1070p24 [Vanderwaltozyma polyspora DSM 70294] gi|156114631|gb|EDO16141.1| hypothetical protein Kpol_1070p24 [Vanderwaltozyma polyspora DSM 70294] Length = 881 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 29/50 (58%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P R ++L GP G+GK+ LA + +S ST FS A SL S + + ++ Sbjct: 628 PVRGMLLFGPPGTGKTMLARAVATESHSTFFSISASSLTSKFLGESEKLV 677 >gi|149238059|ref|XP_001524906.1| ribosome biogenesis ATPase RIX7 [Lodderomyces elongisporus NRRL YB-4239] gi|146451503|gb|EDK45759.1| ribosome biogenesis ATPase RIX7 [Lodderomyces elongisporus NRRL YB-4239] Length = 832 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 36/197 (18%), Positives = 69/197 (35%), Gaps = 38/197 (19%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF--------------SNIAKSLDSILIDTR 108 PS V++ GP G GK+ LA +++SR+ S A Sbjct: 558 PSGVLM-WGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESEKAVRQVFQRARAS 616 Query: 109 KPVLL--EDIDLL------DFND------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 P ++ +++D L ++ L ++ ++ ++ A P + Sbjct: 617 TPCIIFFDELDALVPRRDNSMSESSSRVVNTLLTELDGLNDRKGVFVIGATNRPDM--ID 674 Query: 155 LPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER----SL 209 L RL +++ PD+ +++ + Q ID + + + ER S Sbjct: 675 PAMLRPGRLDKTLYIQLPTPDE--RFEILKTIVRANQSPIDNDVNLHEIAHEERCRNFSG 732 Query: 210 VFAEKLVDKMDNLALSR 226 LV + AL R Sbjct: 733 ADLSSLVKEAAVSALKR 749 >gi|28378917|ref|NP_785809.1| recombination factor protein RarA [Lactobacillus plantarum WCFS1] gi|254557122|ref|YP_003063539.1| recombination factor protein RarA [Lactobacillus plantarum JDM1] gi|300769682|ref|ZP_07079565.1| crossover junction endodeoxyribonuclease [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|28271754|emb|CAD64660.1| chromosome segregation helicase (putative) [Lactobacillus plantarum WCFS1] gi|254046049|gb|ACT62842.1| recombination factor protein RarA [Lactobacillus plantarum JDM1] gi|300492725|gb|EFK27910.1| crossover junction endodeoxyribonuclease [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 426 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 56/133 (42%), Gaps = 20/133 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117 +IL GP G+GK+ +A+ + ++ + R N A + + +LL++I Sbjct: 42 MILYGPPGTGKTSIASAIAGSTKYAFRMLNAATDSKKQLQIVAEEAKMSGTVILLLDEIH 101 Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 LD D L H+ + +L+ A T + P + SR + ++ D Sbjct: 102 RLDKTKQDFLLPHL-----ESGRIILIGATTENPYISIN-PAIRSR---TQIFQVFPLTD 152 Query: 176 DFLEKVIVKMFAD 188 D ++ + + AD Sbjct: 153 DDIQHAVERALAD 165 >gi|18976487|ref|NP_577844.1| proteasome-activating nucleotidase [Pyrococcus furiosus DSM 3638] gi|22096009|sp|Q8U4H3|PAN_PYRFU RecName: Full=Proteasome-activating nucleotidase; Short=PAN; AltName: Full=Proteasomal ATPase; AltName: Full=Proteasome regulatory ATPase; AltName: Full=Proteasome regulatory particle gi|18892030|gb|AAL80239.1| ATP-dependent 26S protease regulatory subunit [Pyrococcus furiosus DSM 3638] Length = 396 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 23/52 (44%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G GK+ +A + + +T + L I ++ E Sbjct: 170 PPKGVLLYGPPGCGKTLMAKAIAHEVNATFIRVVGSELVRKYIGEGARLVHE 221 >gi|68500033|gb|AAY97976.1| putative cointegrase [Plasmid pMCBF1] gi|133711793|gb|ABO36613.1| putative cointegrase [uncultured bacterium pMCBF6] Length = 270 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 22/137 (16%), Positives = 53/137 (38%), Gaps = 40/137 (29%) Query: 37 GISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA-----NIWSDKSRST 91 + R D + + V+L+G G+GK+ LA + Sbjct: 87 RLHRGDFIAAAHN-----------------VVLIGGPGTGKTHLATAIGIEAIQHLGKRV 129 Query: 92 RFSNIAKSLDSILIDTR--------------KPVLLEDIDLLDFNDTQ---LFHIINSIH 134 RF + + ++++ + V+L+++ L F+ LFH+++ ++ Sbjct: 130 RFFSTVELVNALEQEKAHGKAGQLAYRLLYVDLVILDELGYLPFSQAGGALLFHLLSKLY 189 Query: 135 QYDSSLLMTARTFPVSW 151 ++ +S+++T W Sbjct: 190 EH-TSVMITTNLSFAEW 205 >gi|320033041|gb|EFW14991.1| conserved hypothetical protein [Coccidioides posadasii str. Silveira] Length = 939 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 17/30 (56%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 ++L GP G+GK+ LA + +S +T Sbjct: 687 PGLLLYGPPGTGKTLLAKAVARESGATVLE 716 >gi|314965443|gb|EFT09542.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL082PA2] Length = 717 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 50/165 (30%), Gaps = 47/165 (28%) Query: 67 VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110 V+L GP G+GK+ LA + ++ S + + Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAPAI 262 Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + D + L + ++ +L+ A P L Sbjct: 263 IFIDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDVRGGVILIAATNRPDVLDPAL 322 Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVK 184 PDL RLK V P DD L + + Sbjct: 323 LRPGRFDRQVAVEAPDLDGRLKILKVHAHGKPMADDVDLASIARR 367 >gi|281204558|gb|EFA78753.1| cell division cycle protein 48 [Polysphondylium pallidum PN500] Length = 791 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 46/121 (38%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP G GK+ +A ++++ + F SN+ K+ + + Sbjct: 233 PPKGILLYGPPGCGKTMIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 292 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + +++ A P S Sbjct: 293 APSIIFIDEIDSIAPKREKTQGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA 352 Query: 155 L 155 L Sbjct: 353 L 353 Score = 39.0 bits (90), Expect = 0.59, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 506 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRELFDKA 562 >gi|255526660|ref|ZP_05393565.1| Holliday junction DNA helicase RuvB [Clostridium carboxidivorans P7] gi|296187165|ref|ZP_06855562.1| Holliday junction DNA helicase RuvB [Clostridium carboxidivorans P7] gi|255509640|gb|EET85975.1| Holliday junction DNA helicase RuvB [Clostridium carboxidivorans P7] gi|296048200|gb|EFG87637.1| Holliday junction DNA helicase RuvB [Clostridium carboxidivorans P7] Length = 348 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 V+L GP G GK+ LANI + + +++ L D D+L ++ Sbjct: 58 VLLYGPPGLGKTTLANIIATEMGGNLKVTSGPAIERAGDLAAILTSLNDYDVLFIDEI 115 >gi|251771186|gb|EES51768.1| IstB domain protein ATP-binding protein [Leptospirillum ferrodiazotrophum] Length = 263 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 20/111 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDTR 108 +++ GP+G GK+ LA + F + SL+ +L + Sbjct: 115 ILIAGPTGVGKTHLACALGQAACRQGFLTLFFSLNRLLEKMALARAQGRYLSLLKKLTAA 174 Query: 109 KPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL--LMTARTFPVSWGVCLPD 157 ++L+D L QL I + + SL ++T + +W LPD Sbjct: 175 SVIVLDDFGLRALTPLQLQDIYDLVDGRVESLSTIVTTQLPVENWREILPD 225 >gi|303285130|ref|XP_003061855.1| predicted protein [Micromonas pusilla CCMP1545] gi|226456266|gb|EEH53567.1| predicted protein [Micromonas pusilla CCMP1545] Length = 1036 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 27/49 (55%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL 113 R ++L G GSGK+ L + ++ + +T F+ ++ D + + V+L Sbjct: 775 RAILLAGHPGSGKTLLTHAVANGAGATFFNVSPRNTDDVYAGKQSSVML 823 >gi|225574529|ref|ZP_03783139.1| hypothetical protein RUMHYD_02606 [Blautia hydrogenotrophica DSM 10507] gi|225038260|gb|EEG48506.1| hypothetical protein RUMHYD_02606 [Blautia hydrogenotrophica DSM 10507] Length = 439 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 30/209 (14%), Positives = 75/209 (35%), Gaps = 51/209 (24%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +I GP G+GK+ LA + ++ + + N + ++ ++ ND + Sbjct: 55 IIFYGPPGTGKTTLAKVIANTTSA----NFTQINATVAGKKDMEAVI----KQAQNDRGM 106 Query: 127 F-----------HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 F H N + + +L+ A T + V L SR + + Sbjct: 107 FGKKTILFIDEIHRFNKGQQDYLLPFVEDGTIILIGATTENPYFEVNGA-LLSR---SVI 162 Query: 168 VKISLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLV--FAEKLVDK 218 ++ + + ++ +I + D + + +D+ ++ + A ++ Sbjct: 163 FELKQLEKEEIKTLIRRAVKDPVKGMGNYHADLDEDALEFLA-----DMAGGDARTALNA 217 Query: 219 MDNLALSRGMG------ITRSLAAEVLKE 241 ++ L+ IT +A E +++ Sbjct: 218 IELGILTTQRSDDGRIHITLEVAQECIQK 246 >gi|209875637|ref|XP_002139261.1| ATPase, AAA family protein [Cryptosporidium muris RN66] gi|209554867|gb|EEA04912.1| ATPase, AAA family protein [Cryptosporidium muris RN66] Length = 680 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 10/28 (35%), Positives = 16/28 (57%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS 94 ++L GP G GK+ LA + +S + S Sbjct: 435 ILLYGPPGCGKTLLAKAIARESNANFIS 462 >gi|207721635|ref|YP_002252074.1| transposase and helper protein (partial sequencesfused) [Ralstonia solanacearum MolK2] gi|206586796|emb|CAQ17381.1| putative transposase and helper protein (partial sequencesfused) [Ralstonia solanacearum MolK2] Length = 654 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 47/130 (36%), Gaps = 30/130 (23%) Query: 51 QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110 ++ I+ + V+L+GPSG GK+ +A+ + ++ + +++ Sbjct: 485 ASLAFIERAEN-----VVLLGPSGVGKTHIASALAYRATQAGIKTRFITAADLMMQLATA 539 Query: 111 -------------------VLLEDIDLLDF--NDTQLFHIINSI--HQYDSSLLMTARTF 147 +++++I L F + LF N + ++++T+ Sbjct: 540 RQQNRLREFFNRAVIGPRLLVIDEIGYLPFGREEADLF--FNVVAKRYERGAIVLTSNLP 597 Query: 148 PVSWGVCLPD 157 W D Sbjct: 598 FTQWATAFAD 607 >gi|187736155|ref|YP_001878267.1| ATPase AAA [Akkermansia muciniphila ATCC BAA-835] gi|187426207|gb|ACD05486.1| AAA ATPase central domain protein [Akkermansia muciniphila ATCC BAA-835] Length = 463 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 26/77 (33%), Gaps = 10/77 (12%) Query: 67 VILVGPSGSGKSCLANIWSDKS--RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 IL GP G GK+ LA I + ++ S + + + + + T Sbjct: 59 FILWGPPGCGKTTLARILATRTSMHFAALSAVFSGMADLRKAFDEAAR----RREYGHGT 114 Query: 125 QLF----HIINSIHQYD 137 LF H N Q Sbjct: 115 LLFVDEIHRFNRAQQDG 131 >gi|159472777|ref|XP_001694521.1| predicted protein [Chlamydomonas reinhardtii] gi|158276745|gb|EDP02516.1| predicted protein [Chlamydomonas reinhardtii] Length = 580 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 55/175 (31%), Gaps = 45/175 (25%) Query: 62 WPSRV----------VILVGPSGSGKSCLANIWSDKSRSTRF--------------SNIA 97 WP R V+L GP G GK+ +A +++S + S A Sbjct: 335 WPERFEALGLPAASGVLLYGPPGCGKTLVAKAVANESGANFISIKGPELLNKYVGESERA 394 Query: 98 KSLDSILIDTRKPVLL--EDIDLLDFND------------TQLFHIINSIHQYDSSLLMT 143 P +L +++D L QL ++ + ++ Sbjct: 395 VRQLFARARAAHPCVLFFDELDALAPRRGTDNNQAAERVVNQLLTEMDGVDSRQGLFIVA 454 Query: 144 ARTFPVSWGVCLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 A P L L RL+ V + P D I+K R+ ++ + Sbjct: 455 ATNRPDMIDPAL--LRPGRLEKVLYVPLPPPQD---RAAILK-AQVRKTPLEPDV 503 Score = 35.1 bits (80), Expect = 9.3, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 14/73 (19%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P R V+L GP G GK+ LAN +++ A + S + Sbjct: 15 PPRGVLLHGPPGCGKTALANAIANECGVPFLRVSAPEIVSGMSGES-------------- 60 Query: 123 DTQLFHIINSIHQ 135 + +L + N + Sbjct: 61 EAKLRQLFNEARE 73 >gi|156837546|ref|XP_001642796.1| hypothetical protein Kpol_385p7 [Vanderwaltozyma polyspora DSM 70294] gi|156113365|gb|EDO14938.1| hypothetical protein Kpol_385p7 [Vanderwaltozyma polyspora DSM 70294] Length = 362 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 34/144 (23%), Positives = 50/144 (34%), Gaps = 47/144 (32%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL------------DSILIDTRK- 109 PS V+ L GP G GK+ LA + +S + S S+ D+I K Sbjct: 126 PSGVL-LYGPPGCGKTMLAKALAKESGANFISIRMSSIMDKWYGESNKIVDAIFSLANKI 184 Query: 110 ---PVLLEDIDLLDFNDTQLFH------------II---------------NSIHQYDSS 139 + +++ID T H + N I+ DS+ Sbjct: 185 QPCMIFIDEIDSFLRERTSTDHEVTATLKAEFMTLWDGLVSNGRIMIVGATNRINDIDSA 244 Query: 140 LLMTARTFPVSWGVCLPDLCSRLK 163 L R P + + LPD RLK Sbjct: 245 FL---RRLPKRFLISLPDKEQRLK 265 >gi|94989334|ref|YP_597435.1| recombination factor protein RarA [Streptococcus pyogenes MGAS9429] gi|94993223|ref|YP_601322.1| recombination factor protein RarA [Streptococcus pyogenes MGAS2096] gi|94542842|gb|ABF32891.1| ATPase, AAA family [Streptococcus pyogenes MGAS9429] gi|94546731|gb|ABF36778.1| ATPase, AAA family [Streptococcus pyogenes MGAS2096] Length = 422 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 59/166 (35%), Gaps = 22/166 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST---------RFSNIAKSLDSILIDTRKPVLLEDID 117 +IL GP G GK+ +A+ + +R + + + +LL++I Sbjct: 42 MILYGPPGIGKTSIASAIAGTTRYAFRTFNATIDSKKRLQEIAEEAKFSGGLVLLLDEIH 101 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 LD + +++M T + P + SR + ++ ++ Sbjct: 102 RLDKTKQDFL----LPLLENGTIIMIGATTENPFFSVTPAIRSR---VQIFELEPLSNED 154 Query: 178 LEKVIVKMFAD--RQ----IFIDKKLAAYIVQRMERSLVFAEKLVD 217 ++ I +D R + ID + +IV L A +D Sbjct: 155 IKTAIQLAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLD 200 >gi|55378303|ref|YP_136153.1| cell division control protein 48 [Haloarcula marismortui ATCC 43049] gi|55231028|gb|AAV46447.1| cell division control protein 48 [Haloarcula marismortui ATCC 43049] Length = 741 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 62/163 (38%), Gaps = 33/163 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P + V+L GP G+GK+ LA ++++ ++ FS + + + Sbjct: 222 PPQGVLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDASEE 281 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + ++++D + QL +++ + +++ A S Sbjct: 282 SPSIIFIDELDSIAPKREDVTGEVERRVVAQLLTMMDGLESRGQVIVIAATNRVDS---V 338 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L + ++I +PD+ E+++ R + + + Sbjct: 339 DPALRRPGRFDREIEIGVPDEVGREEILQ--IHTRGMPLSDDV 379 Score = 37.1 bits (85), Expect = 2.3, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 19/32 (59%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P V+L GP G+GK+ +A ++++ + S Sbjct: 495 PPSGVLLYGPPGTGKTLMAKAVANETDANFIS 526 >gi|71906933|ref|YP_284520.1| recombination factor protein RarA [Dechloromonas aromatica RCB] gi|71846554|gb|AAZ46050.1| Recombination protein MgsA [Dechloromonas aromatica RCB] Length = 437 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 6/75 (8%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA + + + + + A S + + R+ V+ ++ T L Sbjct: 53 MILWGPPGVGKTTLARMMATQFKCEFIALSAVF--SGIKEVREAVVQAEMWRGQGKRTIL 110 Query: 127 F----HIINSIHQYD 137 F H N Q Sbjct: 111 FVDEIHRFNKAQQDG 125 >gi|15675782|ref|NP_269956.1| recombination factor protein RarA [Streptococcus pyogenes M1 GAS] gi|13623007|gb|AAK34677.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS] Length = 422 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 59/166 (35%), Gaps = 22/166 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST---------RFSNIAKSLDSILIDTRKPVLLEDID 117 +IL GP G GK+ +A+ + +R + + + +LL++I Sbjct: 42 MILYGPPGIGKTSIASAIAGTTRYAFRTFNATIDSKKRLQEIAEEAKFSGGLVLLLDEIH 101 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 LD + +++M T + P + SR + ++ ++ Sbjct: 102 RLDKTKQDFL----LPLLENGTIIMIGATTENPFFSVTPAIRSR---VQIFELEPLSNED 154 Query: 178 LEKVIVKMFAD--RQ----IFIDKKLAAYIVQRMERSLVFAEKLVD 217 ++ I +D R + ID + +IV L A +D Sbjct: 155 IKTAIQLAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLD 200 >gi|16331432|ref|NP_442160.1| cell division protein FtsH [Synechocystis sp. PCC 6803] gi|2492510|sp|Q55700|FTSH2_SYNY3 RecName: Full=ATP-dependent zinc metalloprotease FtsH 2 gi|1001602|dbj|BAA10230.1| cell division protein; FtsH [Synechocystis sp. PCC 6803] Length = 627 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 33/214 (15%), Positives = 70/214 (32%), Gaps = 45/214 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ FS + + Sbjct: 208 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCL 267 Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + ND QL ++ +++ A P L Sbjct: 268 IFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEGNTGIIIIAATNRPDVLDSAL 327 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 ++ V + PD ++++ ++++ + I +R A Sbjct: 328 ------MRPGRFDRQVMVDAPDYSGRKEILEVHARNKKLA-PEVSIDSIARRTP-GFSGA 379 Query: 213 EKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 L + ++ A+ R A +L+ D Sbjct: 380 -DLANLLNEAAILTARR--RKSAITLLEIDDAVD 410 >gi|14601782|ref|NP_148323.1| proteasome-activating nucleotidase [Aeropyrum pernix K1] gi|20532220|sp|Q9YAC7|PAN_AERPE RecName: Full=Proteasome-activating nucleotidase; Short=PAN; AltName: Full=Proteasomal ATPase; AltName: Full=Proteasome regulatory ATPase; AltName: Full=Proteasome regulatory particle gi|5105710|dbj|BAA81022.1| proteasome-activating nucleotidase [Aeropyrum pernix K1] Length = 409 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + ++ +T + L + I ++ E Sbjct: 172 PPKGVLLHGPPGTGKTLLAKAVAGETEATFIRVVGSELVNKFIGEGARLVRE 223 >gi|24987364|pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus Thermophilus gi|24987365|pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp From Thermus Thermophilus gi|24987366|pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From Thermus Thermophilus Length = 254 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 21/48 (43%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 V+LVGP G GK+ LA + ++R + + + + + Sbjct: 52 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRD 99 >gi|303247806|ref|ZP_07334075.1| ATP-dependent metalloprotease FtsH [Desulfovibrio fructosovorans JJ] gi|302490890|gb|EFL50789.1| ATP-dependent metalloprotease FtsH [Desulfovibrio fructosovorans JJ] Length = 609 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 29/199 (14%), Positives = 64/199 (32%), Gaps = 47/199 (23%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+L+GP G+GK+ LA + ++ FS + + Sbjct: 194 VLLIGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEMFVGVGAARVRELFVQAKEKAPCI 253 Query: 111 VLLEDIDLLDFN------------DTQLFHIINSIHQYD-----SSLLMTARTFPVSWGV 153 + ++++D + + + L + + ++M A P + Sbjct: 254 IFIDELDAIGKSRAGAIVGGHDEREQTLNQL--LVEMDGFDPRVGVIIMAATNRPETLDP 311 Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L+A V + PD E ++ A + + ++ ++ R Sbjct: 312 AL------LRAGRFDRQVLVDKPDVAGREAILRVHAAK--VILGPEVDLSVIARKTPGFS 363 Query: 211 FAEKLVDKMDNLALSRGMG 229 A L + ++ AL Sbjct: 364 GA-DLANAINEAALLAARK 381 >gi|284928911|ref|YP_003421433.1| membrane protease FtsH catalytic subunit [cyanobacterium UCYN-A] gi|284809370|gb|ADB95075.1| membrane protease FtsH catalytic subunit [cyanobacterium UCYN-A] Length = 586 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 37/204 (18%), Positives = 68/204 (33%), Gaps = 43/204 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ FS + + Sbjct: 172 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENTPCL 231 Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + ND QL ++ +L+ A P L Sbjct: 232 IFIDEIDAVGRQRGVGYGGGNDEREQTLNQLLTEMDGFEGNSGIILIAATNRPDVLDAAL 291 Query: 156 PDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVFAE 213 SR + V + PD + ++ R I + + I +R A Sbjct: 292 ----SRPGRFDRQVIVDYPDLKGRQGILEVH--SRNKKISESVSLETIARRTP-GFTGA- 343 Query: 214 KLVDKMDNLAL--SRGMGITRSLA 235 L + ++ A+ +R T S+ Sbjct: 344 DLANLLNEAAIFTARRRKKTISMT 367 >gi|255642031|gb|ACU21282.1| unknown [Glycine max] Length = 363 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 51/150 (34%), Gaps = 35/150 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN----------------IAKSLDSILID 106 P + V+L GP G+GK+ LA + +SR+ + +A Sbjct: 118 PQKGVLLYGPPGTGKTMLAKAIAKESRAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKL 177 Query: 107 TRKPVLLEDIDLLDFNDTQLFH--IINS------------IHQYDSSLLMTARTFPVSWG 152 + ++++D H ++N Q +++ A P Sbjct: 178 QPAIIFIDEVDSFLGQRRGTDHEAMLNMKTEFMALWDGFTTDQNAQVMVLAATNRPSELD 237 Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 + L RL A +I +PD +++ Sbjct: 238 EAI--LR-RLPQA--FEIGIPDQRERAEIL 262 >gi|224113871|ref|XP_002316599.1| predicted protein [Populus trichocarpa] gi|222859664|gb|EEE97211.1| predicted protein [Populus trichocarpa] Length = 553 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 35/210 (16%), Positives = 70/210 (33%), Gaps = 33/210 (15%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV--LLEDI---DLL 119 +IL GP G+GK+ +A + S S+ S + K ED L Sbjct: 163 PSIILWGPPGTGKTSIARAIVTSANSQGSSSYRFVSLSAVTCGVKDARDAFEDARKFKLK 222 Query: 120 DFNDTQLF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 + T LF H N + + + + + A T S+ + P L SR + T+ Sbjct: 223 NSKRTVLFLDEVHRFNKSQQDSFLPVIEDGTIVFIGATTENPSFHLVTP-LLSRCRVLTL 281 Query: 168 VKISLPDDD--FLEKV------IVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 + V + K + + + ++ + A ++ + Sbjct: 282 SPLKPHHVQTILKRAVNDPDKGLSKSLGSLGVDVSEDAVEFLSTNCD---GDARVALNAL 338 Query: 220 DNLALSRGMGI----TRSLAAEVLKETQQC 245 + A + + LA+ L + ++ Sbjct: 339 EISAATAAARVGSDGDLRLASVALDDAKEA 368 >gi|154290380|ref|XP_001545786.1| AAA family ATPase [Botryotinia fuckeliana B05.10] gi|150847766|gb|EDN22959.1| AAA family ATPase [Botryotinia fuckeliana B05.10] Length = 820 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 31/50 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S+ST FS A SL S + + ++ Sbjct: 565 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTSKFLGESEKLV 614 >gi|76803147|ref|YP_331242.1| proteasome-activating nucleotidase [Natronomonas pharaonis DSM 2160] gi|76559012|emb|CAI50610.1| proteasome-activating nucleotidase 1 [Natronomonas pharaonis DSM 2160] Length = 405 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 28/64 (43%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P V+L GP G+GK+ LA ++++ +T L I ++ + +L Sbjct: 184 PPTGVLLHGPPGTGKTMLAKAVANQTDATFIKMAGSELVQKFIGEGARLVRDLFELAAER 243 Query: 123 DTQL 126 + + Sbjct: 244 EPAI 247 >gi|50552452|ref|XP_503636.1| YALI0E06655p [Yarrowia lipolytica] gi|49649505|emb|CAG79218.1| YALI0E06655p [Yarrowia lipolytica] Length = 774 Score = 40.9 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 67/173 (38%), Gaps = 40/173 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRKP 110 P R V+L GP G+GK+ L + +S + + SL +I + RK Sbjct: 271 PPRGVLLHGPPGTGKTMLLRAVAQESNAHVLTINGPSIVSKYLGETESSLRAIFEEARKY 330 Query: 111 ----VLLEDIDLL----DFND---------TQLFHIINSIHQ--YDSSLLMTARTFPVSW 151 V +++ID L D ++ L +++ + Q +++ + P + Sbjct: 331 QPAIVFIDEIDALVPRRDGDESGQAESRVVATLLTLMDGMSQSASAKIVVVGSTNRPNAI 390 Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 P L +A V+I +P+ + ++ AD + ++ YI Sbjct: 391 D---PALR---RAGRFDREVEIGIPNAEARLSILSIQMADMPHNMSEEDIQYI 437 >gi|317181763|dbj|BAJ59547.1| recombination factor protein RarA [Helicobacter pylori F57] Length = 391 Score = 40.9 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 32/189 (16%), Positives = 69/189 (36%), Gaps = 25/189 (13%) Query: 65 RVVILVGPSGSGKSCLANIWS-------DKSRSTRFSNIAKSL---DSILIDTRKPVLLE 114 GP G GK+ LA I + +T F L + + + ++ Sbjct: 38 PHAFFYGPPGVGKTSLAQIIACMLERPILLFNATDFKLEGLRLKLKNYQNTLLKPVIFID 97 Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 + L+ + I + D +L++ A T ++ + + SR + + +++ + Sbjct: 98 ETHRLNKTQQEFLLPI---MEKDHALILGASTQDPNYSLSHA-IRSR---SFIFELTPLN 150 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234 L+K+ K + I+ Y++ S A L++ +D A I + Sbjct: 151 KSDLDKLCAKALTLLKKQIEPSAKTYLLNN---SAGDARALLNLLDLSA-----KIEDPI 202 Query: 235 AAEVLKETQ 243 E L+ + Sbjct: 203 TLETLQSLR 211 >gi|315094259|gb|EFT66235.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL060PA1] Length = 717 Score = 40.9 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 50/165 (30%), Gaps = 47/165 (28%) Query: 67 VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110 V+L GP G+GK+ LA + ++ S + + Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAPAI 262 Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + D + L + ++ +L+ A P L Sbjct: 263 IFIDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDVRGGVILIAATNRPDVLDPAL 322 Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVK 184 PDL RLK V P DD L + + Sbjct: 323 LRPGRFDRQVAVEAPDLDGRLKILKVHAHGKPMADDVDLASIARR 367 >gi|325107955|ref|YP_004269023.1| recombination protein MgsA [Planctomyces brasiliensis DSM 5305] gi|324968223|gb|ADY59001.1| Recombination protein MgsA [Planctomyces brasiliensis DSM 5305] Length = 453 Score = 40.9 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 29/202 (14%), Positives = 75/202 (37%), Gaps = 34/202 (16%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRF-------------SNIAKSLDSILIDTRKPV 111 +I GP G+GK+ LA + + K+ + + + K+ DS+ ++ + Sbjct: 54 GSLIFYGPPGTGKTTLARLIARKTGAGWIGLNAASCGVKEVRAALQKASDSLATTGKRTI 113 Query: 112 L-LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 L ++++ + +++ T + + L SR + + + Sbjct: 114 LFVDELHHFTKTQQDVL----LPELEQGTVIFIGATTDNPFFALVSALLSR---SHIFEF 166 Query: 171 SLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRME----RSLVFAEKLVDKM 219 + L+ ++ AD R + + ++ ++ + + R+L E V + Sbjct: 167 EPLSVEALKGLLKNALADSARGLGGYHAEVTEEALDFLAESADGDARRALSALEIAV--L 224 Query: 220 DNLALSRGMGITRSLAAEVLKE 241 A + + ++A E L+ Sbjct: 225 SVAAENERSFVDLAVAEESLQR 246 >gi|300871012|ref|YP_003785884.1| Holliday junction resolvase-like ATPase [Brachyspira pilosicoli 95/1000] gi|300688712|gb|ADK31383.1| helicase subunit of the Holliday junction resolvase-like ATPase [Brachyspira pilosicoli 95/1000] Length = 433 Score = 40.9 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 66/179 (36%), Gaps = 27/179 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAK-----SLDSILIDTRKPVLLEDIDLLDF 121 ++ GP G GKS +A+I + K++ A + + K + E +L Sbjct: 51 MVFFGPPGVGKSTVASIIAKKTKREYVKLNAVLSNVSEIREAIKKAEKNLSNEKKTILFI 110 Query: 122 NDTQLFHIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 ++ H N Q + ++++ T + L SR+ + + + Sbjct: 111 DEI---HRFNKSQQDALLPAVENGTIILIGSTTQNPYFYLTNALLSRI---MLFEFKNLE 164 Query: 175 DDFLEKVIVKMFAD-RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 D+ + + +V D R + ++KK IV+ S K + ++ L+ Sbjct: 165 DEDIREAVVNAIKDKRGLGEEDIDVEKKAIDLIVKF---SHGDVRKALTYLETSYLATQ 220 >gi|189191032|ref|XP_001931855.1| cell division protease ftsH [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187973461|gb|EDU40960.1| cell division protease ftsH [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 784 Score = 40.9 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 35/208 (16%), Positives = 70/208 (33%), Gaps = 43/208 (20%) Query: 67 VILVGPSGSGKSCLANIWSDKSR------------STRFSNIAKSLDSILIDTR----KP 110 V+LVGP G+GK+ LA + ++ AK + + R Sbjct: 346 VLLVGPPGTGKTLLARACAGEAGVPFFYMSGSEFDEVYVGVGAKRVRELFTAARSKAPAI 405 Query: 111 VLLEDIDLLDF---------NDTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158 V ++++D + + L ++N Q + + A P L Sbjct: 406 VFIDELDAVGGKRKSRDANYHRQTLNQLLNDLDGFDQSTGVIFIAATNHPELLDQAL--- 462 Query: 159 CSRLKAA---TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215 L+ V++ LPD ++ ++ D L++ + R AE Sbjct: 463 ---LRPGRFDRHVQVELPDVTGRLAILKYHTKKIRLSPDIDLSS--IARGTPGFSGAE-- 515 Query: 216 VDKMDNLALSRGMGITRSLAAEVLKETQ 243 ++ + N A R + + L + + Sbjct: 516 LENLANSAAIRASKLQAKFVS--LNDME 541 >gi|91094943|ref|XP_967788.1| PREDICTED: similar to 26S protease regulatory subunit S10b [Tribolium castaneum] gi|270016772|gb|EFA13218.1| hypothetical protein TcasGA2_TC010321 [Tribolium castaneum] Length = 392 Score = 40.9 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + + ++ ++ I ++ E Sbjct: 169 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 220 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 221 ------MFNYAKDHQ 229 >gi|189438904|ref|YP_001953985.1| recombination factor protein RarA [Bifidobacterium longum DJO10A] gi|32700050|gb|AAP86675.1| putative GTP-binding protein [Bifidobacterium longum subsp. infantis] gi|189427339|gb|ACD97487.1| ATPase for Holliday junction resolvase [Bifidobacterium longum DJO10A] Length = 459 Score = 40.9 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 34/144 (23%), Positives = 56/144 (38%), Gaps = 28/144 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 VIL GP G GK+ LA I + +S ++ K + +L + ++ Sbjct: 63 VILFGPPGVGKTTLATIVAGQSGRVFEELSAVTSGVKDVRDVLTRAHERLV------SRG 116 Query: 122 NDTQLF--HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVK 169 +T LF + +LL + A T S+ + P L SR + VVK Sbjct: 117 QETVLFIDEVHRFSKSQQDALLPAVENRDVTFIGATTENPSFSIIKP-LLSR---SVVVK 172 Query: 170 ISLPD-DDFLEKVIVKMFADRQIF 192 + + D +E V + DR + Sbjct: 173 LESLEPDQLIELVQRALTDDRGLR 196 >gi|325185486|emb|CCA19969.1| ribosome biogenesis ATPase RIX7 putative [Albugo laibachii Nc14] Length = 770 Score = 40.9 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 28/163 (17%), Positives = 53/163 (32%), Gaps = 49/163 (30%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P R ++L GP G+GK+ LAN + +S + A + + + Sbjct: 192 PPRGILLHGPPGTGKTMLANSIAGESGAAFIRISAPEIVSGMSGESEQKVRELFQEAVKN 251 Query: 107 TRKPVLLEDIDLLDFNDTQL------------------FHIINSIHQYDSSLLMTARTFP 148 V +++ID + + + N +L+ T Sbjct: 252 APAIVFIDEIDAITPKRETVQRGMERRIVAQLLTSIDSLSLEN---TGGKPVLIIGAT-- 306 Query: 149 VSWGVCLPD-LCSRLKAATVVK----ISLPDDDFLEKVIVKMF 186 PD L S L+ A + +PD+ ++ K+ Sbjct: 307 -----NRPDALDSALRRAGRFDREICLGIPDETARMSILQKLA 344 Score = 39.0 bits (90), Expect = 0.60, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 21/46 (45%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 V+L GP G GK+ LA +++S + S L + + + Sbjct: 507 VLLYGPPGCGKTLLAKAIANESEANFISIKGPELLDKYVGESERAV 552 >gi|331239862|ref|XP_003332583.1| hypothetical protein PGTG_12611 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309311573|gb|EFP88164.1| hypothetical protein PGTG_12611 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 795 Score = 40.9 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 21/38 (55%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P R ++L GP G GK+ LAN +++ + + S+ Sbjct: 733 PIRGLLLCGPPGCGKTMLANAIANQLGVRLINVSSTSI 770 >gi|304389395|ref|ZP_07371358.1| IS21 family element [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304327205|gb|EFL94440.1| IS21 family element [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 250 Score = 40.9 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 43/111 (38%), Gaps = 24/111 (21%) Query: 67 VILVGPSGSGKSCL-------------------ANIWSDKSRSTRFSNIAKSLDSILIDT 107 +IL+GP G+GK+ L A W ++ T ++ + + Sbjct: 103 IILLGPPGTGKTHLAVSLGMKVIEQNTNVLFNTAQGW-IETLQTAHNHAQLAQALKRLKK 161 Query: 108 RKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 +++++ L + F +I+ ++ SL++T+ WG L Sbjct: 162 YPLLIIDEFGYLPIDADAANLFFQLISDRYEQG-SLIITSNLPFSQWGEIL 211 >gi|256833464|ref|YP_003162191.1| Microtubule-severing ATPase [Jonesia denitrificans DSM 20603] gi|256686995|gb|ACV09888.1| Microtubule-severing ATPase [Jonesia denitrificans DSM 20603] Length = 414 Score = 40.9 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 20/38 (52%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P + V+ G G+GK+ LA I +D S + + S+ Sbjct: 194 PVKGVLFTGAPGTGKTHLARIIADVSGAVFYQVSGPSI 231 >gi|226363848|ref|YP_002781630.1| hypothetical protein ROP_44380 [Rhodococcus opacus B4] gi|226242337|dbj|BAH52685.1| hypothetical protein [Rhodococcus opacus B4] Length = 350 Score = 40.9 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 48/132 (36%), Gaps = 30/132 (22%) Query: 47 SAIEQAVRLIDSWPSWPS------RVVILVGPSGSGKSCLANIWSDK----SRSTRFSNI 96 A AV ++D + R V L GP G GK+ L + + SR F Sbjct: 13 EAQRSAVAVLDETADGLAQGRPGVRGVYLWGPVGRGKTWLMDRFHAASEVPSRRVHFHAF 72 Query: 97 AKSLDSIL-----IDTRKPVLLEDIDLLDFNDTQLFHIIN------------SIHQYDSS 139 + L + ID L D+ LL F++ FH+ + ++ + Sbjct: 73 FRRLHADAHTLGSIDLAIDAALGDVRLLCFDE---FHLHDVGDAMLVARLLEALFARGIT 129 Query: 140 LLMTARTFPVSW 151 L++T+ P Sbjct: 130 LVVTSNYPPEGL 141 >gi|223986982|ref|ZP_03636940.1| hypothetical protein HOLDEFILI_04266 [Holdemania filiformis DSM 12042] gi|225572818|ref|ZP_03781573.1| hypothetical protein RUMHYD_01009 [Blautia hydrogenotrophica DSM 10507] gi|227824262|ref|ZP_03989094.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|229827143|ref|ZP_04453212.1| hypothetical protein GCWU000182_02528 [Abiotrophia defectiva ATCC 49176] gi|291459472|ref|ZP_06598862.1| replicative DNA helicase [Oribacterium sp. oral taxon 078 str. F0262] gi|331084546|ref|ZP_08333646.1| hypothetical protein HMPREF0992_02570 [Lachnospiraceae bacterium 6_1_63FAA] gi|223961050|gb|EEF65604.1| hypothetical protein HOLDEFILI_04266 [Holdemania filiformis DSM 12042] gi|225039875|gb|EEG50121.1| hypothetical protein RUMHYD_01009 [Blautia hydrogenotrophica DSM 10507] gi|226904761|gb|EEH90679.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|229788761|gb|EEP24875.1| hypothetical protein GCWU000182_02528 [Abiotrophia defectiva ATCC 49176] gi|291417929|gb|EFE91648.1| replicative DNA helicase [Oribacterium sp. oral taxon 078 str. F0262] gi|291557359|emb|CBL34476.1| phage DNA replication protein (predicted replicative helicase loader) [Eubacterium siraeum V10Sc8a] gi|330401096|gb|EGG80690.1| hypothetical protein HMPREF0992_02570 [Lachnospiraceae bacterium 6_1_63FAA] Length = 285 Score = 40.9 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 49/131 (37%), Gaps = 28/131 (21%) Query: 50 EQAVRLIDSWPSWPSRVV--ILVGPSGSGKSCLANIWSDKSR-----------STRFSNI 96 E A +++W + R + +L G G+GKS A ++ + ++ Sbjct: 111 EHAHFYVENWETMKERNIGYLLWGGVGTGKSYFAGCIANALMEREIPVCMTNFALILGDL 170 Query: 97 AKSLDSI-----LIDTRKPVLLEDIDLLDFNDTQLFHIINSI---HQYDSSLLMTARTFP 148 A S + + + ++L+D + + L + N I ++ L++T Sbjct: 171 AASFEGRNEYISRLCSFPLLILDDFGMERGTEYGLEQVYNVIDSRYRSGRPLIVTT---- 226 Query: 149 VSWGVCLPDLC 159 + L DL Sbjct: 227 ---NLTLEDLQ 234 >gi|170717512|ref|YP_001784604.1| recombination factor protein RarA [Haemophilus somnus 2336] gi|168825641|gb|ACA31012.1| AAA ATPase central domain protein [Haemophilus somnus 2336] Length = 446 Score = 40.9 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 67/207 (32%), Gaps = 43/207 (20%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDI--DLLDFN 122 +I GP G+GK+ LA I + + + R S + + I +E + L Sbjct: 53 MIFWGPPGTGKTTLAEIIAQQIHAQVERISAVTAGVKEIRES------IERAKQNRLMGQ 106 Query: 123 DTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVV 168 T LF H N + + + + T L SR+K V Sbjct: 107 QTILFVDEVHRFNKTQQDAFLPHIENGTIIFIGATTENPSFELNNA---LLSRVK---VY 160 Query: 169 KISLPDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERS----LVFAEKLVD 217 + + V+ D ++ + + + + + L E +VD Sbjct: 161 ILKPLTTSNIVTVLQNAIQDAEQGLGKERLIFAENVLETLAEYVNGDARLALNCLELMVD 220 Query: 218 KMDNLALSRGMGITRSLAAEVLKETQQ 244 D +G I L EVL E Q Sbjct: 221 MADET--EKGKLINHRLLTEVLGERQA 245 >gi|145255480|ref|XP_001398977.1| 26S protease regulatory subunit 6A [Aspergillus niger CBS 513.88] gi|134084569|emb|CAK97445.1| unnamed protein product [Aspergillus niger] Length = 464 Score = 40.9 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 54/160 (33%), Gaps = 38/160 (23%) Query: 70 VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113 GP G+GK+ LA + ++ +T L + I ++ + Sbjct: 250 YGPPGTGKTLLARACAAETNATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPSIIFI 309 Query: 114 EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158 +++D + + ++N D ++ A L L Sbjct: 310 DELDAVGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRIKVLAATNRVDVLDPAL--L 367 Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 S RL ++ LP+++ ++ R++ +D ++ Sbjct: 368 RSGRLD--RKIEFPLPNEEARANILQ--IHSRKMAVDDRV 403 >gi|71911512|ref|YP_283062.1| recombination factor protein RarA [Streptococcus pyogenes MGAS5005] gi|71854294|gb|AAZ52317.1| ATPase, AAA family [Streptococcus pyogenes MGAS5005] Length = 422 Score = 40.9 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 59/166 (35%), Gaps = 22/166 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST---------RFSNIAKSLDSILIDTRKPVLLEDID 117 +IL GP G GK+ +A+ + +R + + + +LL++I Sbjct: 42 MILYGPPGIGKTSIASAIAGTTRYAFRTFNATIDSKKRLQEIAEEAKFSGGLVLLLDEIH 101 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 LD + +++M T + P + SR + ++ ++ Sbjct: 102 RLDKTKQDFL----LPLLENGTIIMIGATTENPFFSVTPAIRSR---VQIFELEPLSNED 154 Query: 178 LEKVIVKMFAD--RQ----IFIDKKLAAYIVQRMERSLVFAEKLVD 217 ++ I +D R + ID + +IV L A +D Sbjct: 155 IKTAIQLAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLD 200 >gi|24987367|pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus Thermophilus Length = 278 Score = 40.9 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 21/48 (43%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 V+LVGP G GK+ LA + ++R + + + + + Sbjct: 76 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRD 123 >gi|69247875|ref|ZP_00604524.1| IstB-like ATP-binding protein [Enterococcus faecium DO] gi|257883151|ref|ZP_05662804.1| conserved hypothetical protein [Enterococcus faecium 1,231,502] gi|257891796|ref|ZP_05671449.1| conserved hypothetical protein [Enterococcus faecium 1,231,410] gi|258616917|ref|ZP_05714687.1| hypothetical protein EfaeD_14576 [Enterococcus faecium DO] gi|260559302|ref|ZP_05831484.1| conserved hypothetical protein [Enterococcus faecium C68] gi|261209549|ref|ZP_05923900.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|289567265|ref|ZP_06447647.1| conserved hypothetical protein [Enterococcus faecium D344SRF] gi|293559642|ref|ZP_06676174.1| transposase [Enterococcus faecium E1162] gi|294619596|ref|ZP_06699025.1| transposase [Enterococcus faecium E1679] gi|314939376|ref|ZP_07846616.1| IstB-like ATP binding protein [Enterococcus faecium TX0133a04] gi|314942967|ref|ZP_07849777.1| IstB-like ATP binding protein [Enterococcus faecium TX0133C] gi|314953896|ref|ZP_07856757.1| IstB-like ATP binding protein [Enterococcus faecium TX0133A] gi|314993493|ref|ZP_07858852.1| IstB-like ATP binding protein [Enterococcus faecium TX0133B] gi|314997425|ref|ZP_07862373.1| IstB-like ATP binding protein [Enterococcus faecium TX0133a01] gi|68194660|gb|EAN09145.1| IstB-like ATP-binding protein [Enterococcus faecium DO] gi|257818809|gb|EEV46137.1| conserved hypothetical protein [Enterococcus faecium 1,231,502] gi|257828156|gb|EEV54782.1| conserved hypothetical protein [Enterococcus faecium 1,231,410] gi|260074662|gb|EEW62982.1| conserved hypothetical protein [Enterococcus faecium C68] gi|260076495|gb|EEW64271.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|289160942|gb|EFD08860.1| conserved hypothetical protein [Enterococcus faecium D344SRF] gi|291594171|gb|EFF25616.1| transposase [Enterococcus faecium E1679] gi|291606397|gb|EFF35799.1| transposase [Enterococcus faecium E1162] gi|313588513|gb|EFR67358.1| IstB-like ATP binding protein [Enterococcus faecium TX0133a01] gi|313592036|gb|EFR70881.1| IstB-like ATP binding protein [Enterococcus faecium TX0133B] gi|313594130|gb|EFR72975.1| IstB-like ATP binding protein [Enterococcus faecium TX0133A] gi|313598298|gb|EFR77143.1| IstB-like ATP binding protein [Enterococcus faecium TX0133C] gi|313641337|gb|EFS05917.1| IstB-like ATP binding protein [Enterococcus faecium TX0133a04] Length = 242 Score = 40.9 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 50/125 (40%), Gaps = 24/125 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV----------LLEDI 116 ++ VG G+GK+ LA K+ S S +++++ + E Sbjct: 97 IVCVGSPGTGKTHLAIALGRKACSEGVSTKFFRVNNLVEQLENALKKQQLASFKKRFETT 156 Query: 117 DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 +L+ ++ LF +I+ ++ S+++T+ W D SRL AA Sbjct: 157 ELIILDEMGYLPLTKEGAELLFQLISDWYE-QKSIIITSNLEFSQWNRVFMD--SRLTAA 213 Query: 166 TVVKI 170 V ++ Sbjct: 214 LVDRL 218 >gi|288919383|ref|ZP_06413717.1| IstB domain protein ATP-binding protein [Frankia sp. EUN1f] gi|288349272|gb|EFC83515.1| IstB domain protein ATP-binding protein [Frankia sp. EUN1f] Length = 174 Score = 40.9 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 19/107 (17%), Positives = 44/107 (41%), Gaps = 22/107 (20%) Query: 67 VILVGPSGSGKSCLA---NIWSDKSRSTRFSNIAKSLDSILIDTRKP------------- 110 VIL+GP G GK+ LA + + ++ + + A + + L + Sbjct: 22 VILLGPPGIGKTHLAIGLGVKAAQAGCSVLFDTANNWITRLAAAHQAGHLTTELKKIRRY 81 Query: 111 --VLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWG 152 ++++++ + F+ F ++ + S+L+T+ WG Sbjct: 82 KLIIIDEVGYIPFDQDAANLFFQLV-ASRYEQGSILVTSNLPFGRWG 127 >gi|253690315|ref|YP_003019505.1| PTS system transcriptional activator [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756893|gb|ACT14969.1| PTS system transcriptional activator [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 869 Score = 40.9 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 8/95 (8%) Query: 19 DQPKNKEEQLFFSFPRCLGISRDDLLVHS--AIEQAVRLIDSWPSWPSRVV--ILVGPSG 74 +P+ + S L+ + +++QA+ S ++P R + +L G SG Sbjct: 67 TRPQTSPD-AVIPLKHDDVFSE---LIGATGSLQQAISSCRSAVNYPGRGLPILLSGESG 122 Query: 75 SGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109 GKS LA + ++ + K L + Sbjct: 123 VGKSHLAAMIHLYAQDRGIVALDKPLVELNCADYA 157 >gi|255591254|ref|XP_002535477.1| werner helicase interacting protein, putative [Ricinus communis] gi|223522990|gb|EEF26907.1| werner helicase interacting protein, putative [Ricinus communis] Length = 422 Score = 40.9 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 59/166 (35%), Gaps = 22/166 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST---------RFSNIAKSLDSILIDTRKPVLLEDID 117 +IL GP G GK+ +A+ + +R + + + +LL++I Sbjct: 42 MILYGPPGIGKTSIASAIAGTTRYAFRTFNATIDSKKRLQEIAEEAKFSGGLVLLLDEIH 101 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 LD + +++M T + P + SR + ++ ++ Sbjct: 102 RLDKTKQDFL----LPLLENGTIIMIGATTENPFFSVTPAIRSR---VQIFELEPLSNED 154 Query: 178 LEKVIVKMFAD--RQ----IFIDKKLAAYIVQRMERSLVFAEKLVD 217 ++ I +D R + ID + +IV L A +D Sbjct: 155 IKTAIQLAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLD 200 >gi|226507260|ref|NP_001145788.1| hypothetical protein LOC100279295 [Zea mays] gi|219884425|gb|ACL52587.1| unknown [Zea mays] Length = 331 Score = 40.9 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 25/101 (24%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110 P ++L GP G GK+ LA+ + ++ + A + S + + Sbjct: 216 PVAGLLLHGPPGCGKTTLAHAIAIETGVLFYKISAPEVVSGVSGASEENIRGLFQKAYRT 275 Query: 111 ----VLLEDIDLLDFNDTQLFHIINSIHQYDSSL---LMTA 144 V +++ID + N + + + LMT Sbjct: 276 APSIVFIDEIDAIASKRE------NLQREMERRIVTQLMTC 310 >gi|150401783|ref|YP_001325549.1| replication factor C large subunit [Methanococcus aeolicus Nankai-3] gi|166225152|sp|A6UWR5|RFCL_META3 RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|150014486|gb|ABR56937.1| AAA ATPase central domain protein [Methanococcus aeolicus Nankai-3] Length = 474 Score = 40.9 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 36/182 (19%), Positives = 65/182 (35%), Gaps = 29/182 (15%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIA---------------KSLDSILIDT 107 P V+ LVGP G GK+ L N ++ A S + Sbjct: 38 PKPVL-LVGPPGCGKTTLTNALANDYGFELIELNASDKRNKDIIRQIVGGASSSKSITGK 96 Query: 108 RKPVLLEDIDLLDF--NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 R ++L+++D L + + II I + +++TA + P L S Sbjct: 97 RVLIVLDEVDGLSGNSDRGGVSEIIKIIKNAKNPIILTAN------DIYKPSLMSLRTVC 150 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 +VKI + + V+ ++ +D K+ I + + A D +L+ Sbjct: 151 NIVKIGSVHTNSIVPVLRRISLKEGFEVDDKILKIIAKHAGGDVRSAIN-----DLESLA 205 Query: 226 RG 227 G Sbjct: 206 MG 207 >gi|119190207|ref|XP_001245710.1| hypothetical protein CIMG_05151 [Coccidioides immitis RS] Length = 986 Score = 40.9 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 17/30 (56%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 ++L GP G+GK+ LA + +S +T Sbjct: 715 PGLLLYGPPGTGKTLLAKAVARESGATVLE 744 >gi|73669293|ref|YP_305308.1| AAA ATPase family protein [Methanosarcina barkeri str. Fusaro] gi|72396455|gb|AAZ70728.1| AAA family ATPase [Methanosarcina barkeri str. Fusaro] Length = 372 Score = 40.9 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 16/82 (19%) Query: 57 DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------- 109 + + W R ++ GPSG+GK+ LA ++K+ A L + Sbjct: 146 ERFGKWAPRNILFFGPSGTGKTMLAKALANKTDVLIIPVKATQLIGEYVGEGARQIHQLY 205 Query: 110 ---------PVLLEDIDLLDFN 122 + ++++D + + Sbjct: 206 DRAEEMAPCIIFIDELDAIALD 227 >gi|25029098|ref|NP_739152.1| putative cell division protein FtsH [Corynebacterium efficiens YS-314] gi|23494385|dbj|BAC19352.1| putative cell division protein FtsH [Corynebacterium efficiens YS-314] Length = 812 Score = 40.9 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 37/210 (17%), Positives = 68/210 (32%), Gaps = 57/210 (27%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110 R V+L GP G+GK+ LA + ++ FS + + Sbjct: 201 RGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFKQAKENSP 260 Query: 111 --VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFP----- 148 + +++ID + D + L + ++ S +LM A P Sbjct: 261 CIIFIDEIDAVGRARGSGMGGGHDEREQTLNQLLVEMDGFGDRGSVILMAATNRPDVLDP 320 Query: 149 ---------VSWGVCLPDLCSRLKAATVVKIS------LPDDDFLEKVIVKMFADRQIFI 193 V PDL R +++I PD L+ + + + Sbjct: 321 ALLRPGRFDRQIPVTAPDLKGR---EQILEIHAKGKPFAPD-ANLKALAKRTAGMSGADL 376 Query: 194 DKKL--AAYIVQRMERSLVFAEKLVDKMDN 221 L AA + R+ + + A+ L + D Sbjct: 377 GNVLNEAALLTARIGGNAITADALEEATDR 406 >gi|67476467|ref|XP_653833.1| 26S protease regulatory subunit [Entamoeba histolytica HM-1:IMSS] gi|56470829|gb|EAL48447.1| 26S protease regulatory subunit, putative [Entamoeba histolytica HM-1:IMSS] Length = 410 Score = 40.9 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 188 PPKGVILYGPPGTGKTLLAKAVANETSATFLRIVGSELIQKYLGDGPKLVRE 239 >gi|326477856|gb|EGE01866.1| vacuolar protein sorting-associated protein 4 [Trichophyton equinum CBS 127.97] Length = 434 Score = 40.9 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 14/80 (17%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + ++L GP G+GKS LA + +++ST FS + L S + + ++ Sbjct: 164 PWKGILLYGPPGTGKSYLAKAVATEAKSTFFSVSSSDLVSKWMGESERLV---------- 213 Query: 123 DTQLFHIINSIHQYDSSLLM 142 QLF N + +++ Sbjct: 214 -KQLF---NMARENKPAIVF 229 >gi|313125329|ref|YP_004035593.1| proteasome-activating nucleotidase [Halogeometricum borinquense DSM 11551] gi|312291694|gb|ADQ66154.1| Proteasome-activating nucleotidase [Halogeometricum borinquense DSM 11551] Length = 409 Score = 40.9 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 28/64 (43%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P V+L GP G+GK+ LA ++++ +T L I ++ + +L Sbjct: 184 PPSGVLLHGPPGTGKTMLAKAVANETDATFIKMAGSELVRKFIGEGARLVRDLFELAADR 243 Query: 123 DTQL 126 + + Sbjct: 244 EPAV 247 >gi|310287909|ref|YP_003939167.1| ATP-dependent zinc metallopeptidase involved in cell division [Bifidobacterium bifidum S17] gi|311064790|ref|YP_003971515.1| cell division protein FtsH [Bifidobacterium bifidum PRL2010] gi|309251845|gb|ADO53593.1| ATP-dependent zinc metallopeptidase involved in cell division [Bifidobacterium bifidum S17] gi|310867109|gb|ADP36478.1| FtsH Cell division protein [Bifidobacterium bifidum PRL2010] Length = 697 Score = 40.9 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 25/62 (40%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 R V+L GP G+GK+ LA + ++ ++ + + + + D N Sbjct: 250 RGVLLYGPPGTGKTLLARAIAGEAGVPFYAMAGSDFVEMFVGLGASRVRDLFDEAKKNAP 309 Query: 125 QL 126 + Sbjct: 310 AI 311 >gi|302762985|ref|XP_002964914.1| ATP-binding cassette transporter [Selaginella moellendorffii] gi|300167147|gb|EFJ33752.1| ATP-binding cassette transporter [Selaginella moellendorffii] Length = 1441 Score = 40.9 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 24/48 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110 P R ++L+GP GSGKS L + K + + A + + +D + Sbjct: 201 PGRTMLLLGPPGSGKSTLLRALAGKLDQSLKTTGAVTYNGHTLDEFEA 248 >gi|297834890|ref|XP_002885327.1| hypothetical protein ARALYDRAFT_479491 [Arabidopsis lyrata subsp. lyrata] gi|297331167|gb|EFH61586.1| hypothetical protein ARALYDRAFT_479491 [Arabidopsis lyrata subsp. lyrata] Length = 1003 Score = 40.9 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 49/144 (34%), Gaps = 43/144 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------ILIDTR 108 P + ++L GP G+GK+ LA + ++ + S +L S Sbjct: 748 PCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKL 807 Query: 109 KPVLL--EDIDLLDFNDTQLF-H-----IIN---------SIHQYDSSLLMTA------- 144 PV++ +++D L F H + N L++ A Sbjct: 808 APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDGLRSKDSQRILILGATNRPFDL 867 Query: 145 -----RTFPVSWGVCLPDLCSRLK 163 R P V LPD +RLK Sbjct: 868 DDAVIRRLPRRIYVNLPDAENRLK 891 >gi|94986800|ref|YP_594733.1| ABC transporter ATPase [Lawsonia intracellularis PHE/MN1-00] gi|94731049|emb|CAJ54412.1| ATPase components of ABC transporters with duplicated ATPase domains [Lawsonia intracellularis PHE/MN1-00] Length = 665 Score = 40.9 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 11/76 (14%) Query: 20 QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS--------RVVILVG 71 +P+ K ++L F +P + D +++ +A + D WPS + + LVG Sbjct: 300 KPEIKRKELKFIWPTP--LKADKVILSAA-ALSFSFPDGRQLWPSLTFSLLNGQRIALVG 356 Query: 72 PSGSGKSCLANIWSDK 87 P+G GKS L I + + Sbjct: 357 PNGCGKSTLLKIIAGQ 372 >gi|21325468|dbj|BAC00090.1| ATP-dependent Zn proteases [Corynebacterium glutamicum ATCC 13032] Length = 860 Score = 40.9 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 34/206 (16%), Positives = 66/206 (32%), Gaps = 49/206 (23%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110 R V+L GP G+GK+ LA + ++ +S + + Sbjct: 206 RGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFKQAKENSP 265 Query: 111 --VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFP----- 148 + +++ID + D + L + ++ +LM A P Sbjct: 266 CIIFVDEIDAVGRARGSGMGGGHDEREQTLNQLLVEMDGFGDRQGVILMAATNRPDVLDP 325 Query: 149 ---------VSWGVCLPDLCSRLKAATVVKISLP--DDDFLEKVIVKMFADRQIFIDKKL 197 V PDL R + V P D ++ + + + L Sbjct: 326 ALLRPGRFDRQIPVTNPDLRGREQILEVHAKGKPFAPDADIKALAKRTAGMSGADLANVL 385 Query: 198 --AAYIVQRMERSLVFAEKLVDKMDN 221 AA + R+ +++ A+ L + D Sbjct: 386 NEAALLTARVGGNVITADALEEATDR 411 >gi|220678160|emb|CAX13256.1| nuclear VCP-like [Danio rerio] Length = 796 Score = 40.9 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 56/168 (33%), Gaps = 42/168 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P R +L GP G GK+ LA + ++ A L + + Sbjct: 259 PPRGFLLHGPPGCGKTLLAQAVAGETALPLLKISAPELVSGVSGESEQKLRELFEQAISS 318 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151 + +++ID + QL + NS+ + L++ A P S Sbjct: 319 APCILFIDEIDAITPKRETASKDMERRIVAQLLTCMDDLNSMLEPAQVLVIGATNRPDSL 378 Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKK 196 L +A + + +PD+ K++ + R+I + Sbjct: 379 DPALR------RAGRFDREICLGIPDEGARMKILKTLC--RKIRLPDD 418 Score = 37.1 bits (85), Expect = 2.1, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 22/46 (47%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 ++L GP G GK+ LA +++S S L ++ + + + Sbjct: 557 LLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAV 602 >gi|71904346|ref|YP_281149.1| recombination factor protein RarA [Streptococcus pyogenes MGAS6180] gi|139474470|ref|YP_001129186.1| recombination factor protein RarA [Streptococcus pyogenes str. Manfredo] gi|306826574|ref|ZP_07459881.1| AAA family ATPase [Streptococcus pyogenes ATCC 10782] gi|71803441|gb|AAX72794.1| ATPase, AAA family [Streptococcus pyogenes MGAS6180] gi|134272717|emb|CAM30989.1| putative ATPase [Streptococcus pyogenes str. Manfredo] gi|304431212|gb|EFM34214.1| AAA family ATPase [Streptococcus pyogenes ATCC 10782] Length = 422 Score = 40.9 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 59/166 (35%), Gaps = 22/166 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST---------RFSNIAKSLDSILIDTRKPVLLEDID 117 +IL GP G GK+ +A+ + +R + + + +LL++I Sbjct: 42 MILYGPPGIGKTSIASAIAGTTRYAFRTFNATIDSKKRLQEIAEEAKFSGGLVLLLDEIH 101 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 LD + +++M T + P + SR + ++ ++ Sbjct: 102 RLDKTKQDFL----LPLLENGTIIMIGATTENPFFSVTPAIRSR---VQIFELEPLSNED 154 Query: 178 LEKVIVKMFAD--RQ----IFIDKKLAAYIVQRMERSLVFAEKLVD 217 ++ I +D R + ID + +IV L A +D Sbjct: 155 IKTAIQLAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLD 200 >gi|116618925|ref|YP_819296.1| recombination factor protein RarA [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097772|gb|ABJ62923.1| Recombination protein MgsA [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 428 Score = 40.9 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 58/134 (43%), Gaps = 20/134 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117 +IL GP G+GK+ +A+ + S+ + R N A ++ + +LL++I Sbjct: 43 MILYGPPGTGKTSIASAIAGSSKYAFRMLNAATDSQKDLQIVVEEAKMSGTVVLLLDEIH 102 Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 L+ D L H+ + + +L+ A T V P + SR + +++ + Sbjct: 103 RLNKIKQDFLLPHL-----ESGAIILIGATTENPYINVT-PAIRSR---TQIFEVNSLSE 153 Query: 176 DFLEKVIVKMFADR 189 + + + AD+ Sbjct: 154 TDITSAVKRAIADK 167 >gi|302809605|ref|XP_002986495.1| hypothetical protein SELMODRAFT_425473 [Selaginella moellendorffii] gi|300145678|gb|EFJ12352.1| hypothetical protein SELMODRAFT_425473 [Selaginella moellendorffii] Length = 1453 Score = 40.9 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 24/48 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110 P R ++L+GP GSGKS L + K + + A + + +D + Sbjct: 196 PGRTMLLLGPPGSGKSTLLRALAGKLDQSLKTTGAVTYNGHSLDEFEA 243 >gi|167391175|ref|XP_001739671.1| 26S protease regulatory subunit [Entamoeba dispar SAW760] gi|165896577|gb|EDR23943.1| 26S protease regulatory subunit, putative [Entamoeba dispar SAW760] Length = 410 Score = 40.9 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L + ++ E Sbjct: 188 PPKGVILYGPPGTGKTLLAKAVANETSATFLRIVGSELIQKYLGDGPKLVRE 239 >gi|95930182|ref|ZP_01312921.1| AAA ATPase, central region [Desulfuromonas acetoxidans DSM 684] gi|95133876|gb|EAT15536.1| AAA ATPase, central region [Desulfuromonas acetoxidans DSM 684] Length = 439 Score = 40.9 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 62/157 (39%), Gaps = 27/157 (17%) Query: 67 VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSL------------DSILIDTRKPVL 112 +I GP G+GK+ LA + + +SR FS I + D + TR + Sbjct: 52 LIFWGPPGTGKTTLAQVIAQSTRSRFVFFSAIMNGVKDIRHIVSRAKEDRSMYGTRTILF 111 Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +++I + + F + +L+ A T S+ V L SR A V + Sbjct: 112 VDEIHRFNKSQQDAFLP---ALEKGDLILIGATTENPSFEVNAA-LLSR---ARVFVLKP 164 Query: 173 PDDDFLEKVIVKMFAD-RQIF-----IDKKLAAYIVQ 203 D + ++ + +D R + + ++ ++ Q Sbjct: 165 LQHDDIVLLLQRALSDPRGLADQKPDVSQEALDHLAQ 201 >gi|328870426|gb|EGG18800.1| cell division cycle protein 48 [Dictyostelium fasciculatum] Length = 798 Score = 40.5 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 47/121 (38%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + ++L GP G GK+ +A ++++ + F SN+ K+ + + Sbjct: 234 PPKGILLYGPPGCGKTMIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 293 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + +++ A P S Sbjct: 294 SPAIIFIDEIDSIAPKREKTQGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA 353 Query: 155 L 155 L Sbjct: 354 L 354 Score = 39.0 bits (90), Expect = 0.68, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 18/32 (56%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 PS+ V+ GP G GK+ LA + + ++ S Sbjct: 507 PSKGVLFYGPPGCGKTLLAKAIASECQANFIS 538 >gi|315053797|ref|XP_003176273.1| hypothetical protein MGYG_00361 [Arthroderma gypseum CBS 118893] gi|311338119|gb|EFQ97321.1| hypothetical protein MGYG_00361 [Arthroderma gypseum CBS 118893] Length = 833 Score = 40.5 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 19/40 (47%), Positives = 27/40 (67%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P+R ++L GP G+GK+ LA + +S+ST FS A SL S Sbjct: 577 PARGMLLFGPPGTGKTMLARAVATESQSTFFSVSASSLAS 616 >gi|302790365|ref|XP_002976950.1| hypothetical protein SELMODRAFT_106157 [Selaginella moellendorffii] gi|300155428|gb|EFJ22060.1| hypothetical protein SELMODRAFT_106157 [Selaginella moellendorffii] Length = 310 Score = 40.5 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 48/138 (34%), Gaps = 39/138 (28%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID---------------- 106 P + V+L GP G+GK+ L + +S + F S++ ++ Sbjct: 58 PCKGVLLYGPPGTGKTYLTKAVAAQSSANLFWLRGNSIEYKWLEDPKRMTRALFSIARRL 117 Query: 107 TRKPVLLEDIDLL----DFNDTQLFH---------IINSIHQYDSSLLMTAR-------- 145 + L++ID + F +++ I + + T R Sbjct: 118 APSIIFLDEIDSIFAIQAGEAMTRFKSEFIYGWDRLMSGIAESVVVMAATCRPFHLDESV 177 Query: 146 --TFPVSWGVCLPDLCSR 161 FP V LPDL SR Sbjct: 178 IQKFPKRLCVDLPDLSSR 195 >gi|312200584|ref|YP_004020645.1| ABC transporter [Frankia sp. EuI1c] gi|311231920|gb|ADP84775.1| ABC transporter related protein [Frankia sp. EuI1c] Length = 239 Score = 40.5 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 3/86 (3%) Query: 62 WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 WP V + GPSGSGKS L NI + R+ S + + + L + Sbjct: 40 WPGEFVAVTGPSGSGKSTLLNIIAGLERADGGSVVVAGQSLAELSETRLARLRRRHVGMV 99 Query: 122 NDTQLFHIINSIHQYDSSLLMTARTF 147 Q FH++ S+ D+ +++ AR Sbjct: 100 --FQFFHLLESMTAADN-VVLAARLA 122 >gi|291295268|ref|YP_003506666.1| Holliday junction DNA helicase RuvB [Meiothermus ruber DSM 1279] gi|290470227|gb|ADD27646.1| Holliday junction DNA helicase RuvB [Meiothermus ruber DSM 1279] Length = 329 Score = 40.5 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 25/182 (13%), Positives = 69/182 (37%), Gaps = 29/182 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLLEDID 117 ++L GP G GK+ LA++ + + + ++ + ++ + +++I Sbjct: 46 LLLFGPPGLGKTTLAHVVAYELGVNIRVTSGPAIEKPGDLAAILTNSLEEGDILFIDEIH 105 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD----------------LCSR 161 L + H+ ++ + +++ A + + LP L SR Sbjct: 106 RLSKAAEE--HLYPALEDFKIDIVIGAGPAARTLRLDLPRFTLIGATTRPGLISGPLRSR 163 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 + + + L + + + + I+ + A I +R ++ A++L ++ + Sbjct: 164 F--GIIEHLEFYTETELAQGVTRDAQLMGLAIEPEAALEIGRRSRGTMRIAKRLFRRVRD 221 Query: 222 LA 223 A Sbjct: 222 FA 223 >gi|227876234|ref|ZP_03994350.1| cell division protein ftsH family protein [Mobiluncus mulieris ATCC 35243] gi|227843195|gb|EEJ53388.1| cell division protein ftsH family protein [Mobiluncus mulieris ATCC 35243] Length = 765 Score = 40.5 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 31/196 (15%), Positives = 64/196 (32%), Gaps = 43/196 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110 V+L GP G+GK+ LA + ++ S + + Sbjct: 223 VLLYGPPGTGKTLLAKAVAGEAGVPFFSMSGSEFVEMFVGMGASRVRDLFEQARNAAPAI 282 Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + D + L + ++ + + +L+ A P L Sbjct: 283 IFVDEIDAVGRHRGTGMGGGHDEREQTLNQLLVEMDGFDERTNVILIAATNRPDVLDPAL 342 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 L+ V + PD E ++ ++ + D L A + +R A Sbjct: 343 ------LRPGRFDRQVAVEAPDIKGREAILTVHAKNKPLSKDTDLKA-LAKRTP-GFTGA 394 Query: 213 EKLVDKMDNLALSRGM 228 L + ++ AL Sbjct: 395 -DLANVLNEAALLAAR 409 >gi|227499580|ref|ZP_03929687.1| crossover junction endoribonuclease subunit B [Anaerococcus tetradius ATCC 35098] gi|227218339|gb|EEI83593.1| crossover junction endoribonuclease subunit B [Anaerococcus tetradius ATCC 35098] Length = 335 Score = 40.5 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 34/202 (16%), Positives = 65/202 (32%), Gaps = 52/202 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P V+L GP G GK+ L+ I +++ +++ L D D+L + Sbjct: 55 PLDHVLLQGPPGLGKTTLSTIIANELGVNLRVTSGPAIERPSDLASILTNLSDGDVLFID 114 Query: 123 DTQLFHIINSIHQY----------------------------DSSLLMTARTFPVSWGVC 154 + H IN + D L+ A T Sbjct: 115 EI---HRINRSVEEILYSAMEDFVLDIIVGKGPNAQSIRIDLDRFTLIGATTRAGMLSAP 171 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID--------------KKLAAY 200 L D + ++ ++L D L ++ + I ID ++A Sbjct: 172 LRD-----RFGVLLALNLYDTKDLTTIVKRSAQILGIAIDEKGAVEIARRSRGTPRIANR 226 Query: 201 IVQRMERSLVFAEKLVDKMDNL 222 +++R+ R + D++D Sbjct: 227 LLKRV-RDF-AIVRANDQIDYE 246 >gi|224283825|ref|ZP_03647147.1| ATP-dependent zinc metallopeptidase involved in cell division [Bifidobacterium bifidum NCIMB 41171] gi|313140979|ref|ZP_07803172.1| ATP-dependent zinc metallopeptidase [Bifidobacterium bifidum NCIMB 41171] gi|313133489|gb|EFR51106.1| ATP-dependent zinc metallopeptidase [Bifidobacterium bifidum NCIMB 41171] Length = 697 Score = 40.5 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 25/62 (40%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 R V+L GP G+GK+ LA + ++ ++ + + + + D N Sbjct: 250 RGVLLYGPPGTGKTLLARAIAGEAGVPFYAMAGSDFVEMFVGLGASRVRDLFDEAKKNAP 309 Query: 125 QL 126 + Sbjct: 310 AI 311 >gi|150397835|ref|YP_001328302.1| Holliday junction DNA helicase RuvB [Sinorhizobium medicae WSM419] gi|166231558|sp|A6UCT7|RUVB_SINMW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|150029350|gb|ABR61467.1| Holliday junction DNA helicase RuvB [Sinorhizobium medicae WSM419] Length = 346 Score = 40.5 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 49/264 (18%), Positives = 91/264 (34%), Gaps = 43/264 (16%) Query: 4 MKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDD---LLVHSAIEQAVRLIDSWP 60 M E P+K+ D Q +R + + + +D Sbjct: 1 MSEAARLIAPEKRGEDVDATLRPQ-TLDEFTGQAEARANLKIFIEAARNRG--EALDH-- 55 Query: 61 SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120 V+ VGP G GK+ LA I + + S + LE+ D+L Sbjct: 56 ------VLFVGPPGLGKTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLF 109 Query: 121 FNDTQLFHIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDLC--------SRLKAA 165 ++ H +N + D L + P + V + DL +RL Sbjct: 110 IDEI---HRLNPAVEEILYPAMEDFQLDLIIGEGPSARSVKI-DLAKFTLVAATTRLGLL 165 Query: 166 TV---------VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216 T V+++ + LE ++ + + + + A I +R + A +L+ Sbjct: 166 TTPLRDRFGIPVRLNFYTVEELELIVRRGARLMGLGMTDEGAREIARRARGTPRIAGRLL 225 Query: 217 DKM-DNLALSRGMGITRSLAAEVL 239 ++ D ++R +TR +A E L Sbjct: 226 RRVRDFAEVARAEAVTRQIADEAL 249 >gi|19919956|ref|NP_612589.1| 42KDa protein [Beet soil-borne mosaic virus] gi|3136267|gb|AAC18570.1| 42KDa protein [beet soil-borne mosaic virus] Length = 382 Score = 40.5 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 9/79 (11%) Query: 47 SAIEQAVRL-----IDSWPSWPSRVVILVGPSGSGKS----CLANIWSDKSRSTRFSNIA 97 + A++L +D W +RV I++G G GKS + + + + + + Sbjct: 92 TCNAAAIKLDIVERLDVSSDWSARVGIVLGAPGVGKSTSIKHILDTYGSRYKMVLCLPVK 151 Query: 98 KSLDSILIDTRKPVLLEDI 116 + LD + L++DI Sbjct: 152 QLLDGVFSGRMDTFLIDDI 170 >gi|19113502|ref|NP_596710.1| ribosome biogenesis factor recycling AAA family ATPase [Schizosaccharomyces pombe 972h-] gi|74676032|sp|O60058|AFG2_SCHPO RecName: Full=ATPase family gene 2 protein gi|3116137|emb|CAA18886.1| ribosome biogenesis factor recycling AAA family ATPase [Schizosaccharomyces pombe] Length = 809 Score = 40.5 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 39/210 (18%), Positives = 75/210 (35%), Gaps = 48/210 (22%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRKP 110 P R V+L GP G+GK+ + + ++ + F+ L I D R Sbjct: 312 PPRGVLLYGPPGTGKTMVMRAVAAEANAQVFTIDGPSVVGKYLGETESRLRKIFEDARAH 371 Query: 111 ----VLLEDIDLLDFNDTQ------------LFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID L T+ L +++ + +++ A P S Sbjct: 372 QPSIIFIDEIDALAPKRTEDVSEAESRAVATLLTLLDGMANAGKVVVIAATNRPNSIDEA 431 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA-------DRQIFIDKKLAAYIVQRMER 207 L RL+ ++I +PD +I + + D Q+ + LA R Sbjct: 432 LRR-PGRLE--KEIEIGIPDKSARLDIIKLLLSGVPNEINDAQL---EDLA-------SR 478 Query: 208 SLVFAEKLVDKMDNLALSRGMGITRSLAAE 237 + + + + A R + T SL + Sbjct: 479 THAYVGADLAAVVREAALRAIKRTISLQKD 508 >gi|315042992|ref|XP_003170872.1| DNA-dependent ATPase MGS1 [Arthroderma gypseum CBS 118893] gi|311344661|gb|EFR03864.1| DNA-dependent ATPase MGS1 [Arthroderma gypseum CBS 118893] Length = 552 Score = 40.5 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 33/214 (15%), Positives = 74/214 (34%), Gaps = 37/214 (17%) Query: 49 IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN------------- 95 LI+ +IL G +G+GK+ +A + + S Sbjct: 164 NGVLRGLIERDR---VPSMILWGSAGTGKTTVARVIASMVGSRFVEINSTSSGVAECKKL 220 Query: 96 IAKSLDSILIDTRKPVLL-EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 A++ + + + RK ++ ++I + +F + L+ A T S+ V Sbjct: 221 FAEAKNELSLTGRKTIIFCDEIHRFSKSQQDVFL---GPVESGQVTLIGATTENPSFKVQ 277 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ------IFIDKKLAAYIVQRMERS 208 L SR ++ ++ + ++ + +D +L Y+ + Sbjct: 278 NA-LLSR---CRTFTLAKLTEENICAILNRALRVEGPNYSPSALVDDELIKYLAAFADGD 333 Query: 209 LVFAEKLVD-KMD---NLALSR---GMGITRSLA 235 A L++ MD +++ +TR+L Sbjct: 334 ARTALNLLELAMDLSQREGMTKDELKKSLTRTLV 367 >gi|302781891|ref|XP_002972719.1| hypothetical protein SELMODRAFT_267596 [Selaginella moellendorffii] gi|300159320|gb|EFJ25940.1| hypothetical protein SELMODRAFT_267596 [Selaginella moellendorffii] Length = 440 Score = 40.5 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 45/141 (31%), Gaps = 42/141 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN----------------IAKSLDSILID 106 P R +L GP G+GKS LA + ++ ST +S +A Sbjct: 166 PWRAFLLYGPPGTGKSYLAKAVATEADSTFYSISSSDLVSKWMGESEKLVANLFQMARDS 225 Query: 107 TRKPVLLEDIDLLDFND--------------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 + +++ID L L + + L++ A P S Sbjct: 226 APSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYSLD 285 Query: 153 ------------VCLPDLCSR 161 + LPDL +R Sbjct: 286 HAVRRRFDKRIYIPLPDLKAR 306 >gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62] gi|254040222|gb|ACT57018.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62] Length = 647 Score = 40.5 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 33/208 (15%), Positives = 66/208 (31%), Gaps = 54/208 (25%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ F+ + + Sbjct: 184 VLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCI 243 Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 V +++ID + D + L + ++ + +L+ A P L Sbjct: 244 VFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAAL 303 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER----- 207 L+ + + PD E +++ R + + + ++ + R Sbjct: 304 ------LRPGRFDRQITVPNPDIVGREHILMVH--SRNVPLAPNVI---LKTIARGTPGF 352 Query: 208 SLVFAEKLVDKMDNLALSRGMGITRSLA 235 S LV + AL R L Sbjct: 353 SGADLRNLV---NEAALMAARR-NRRLV 376 >gi|295664729|ref|XP_002792916.1| AAA family ATPase [Paracoccidioides brasiliensis Pb01] gi|226278437|gb|EEH34003.1| AAA family ATPase [Paracoccidioides brasiliensis Pb01] Length = 810 Score = 40.5 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 19/40 (47%), Positives = 27/40 (67%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P+R ++L GP G+GK+ LA + +S+ST FS A SL S Sbjct: 604 PARGMLLFGPPGTGKTMLARAVATESQSTFFSVSASSLTS 643 >gi|206590341|emb|CAQ37302.1| hypothetical transposase (partial sequence c terminus) protein [Ralstonia solanacearum MolK2] Length = 513 Score = 40.5 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 23/162 (14%), Positives = 53/162 (32%), Gaps = 46/162 (28%) Query: 51 QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110 ++ I+ + V+L+GPSG GK+ +A+ + ++ + +++ Sbjct: 317 ASLAFIERAEN-----VVLLGPSGVGKTHIASALAYRATQAGIKTRFITAADLMMQLATA 371 Query: 111 -------------------VLLEDIDLLDF--NDTQLFHIINSI--HQYDSSLLMTARTF 147 +++++I L F + LF N + ++++T+ Sbjct: 372 RQQNRLREFFNRAVIGPRLLVIDEIGYLPFGREEADLF--FNVVAKRYERGAIVLTSNLP 429 Query: 148 PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 W D D ++ FA R Sbjct: 430 FTQWATAFAD----------------DQTLTAAMLDMAFASR 455 >gi|55378742|ref|YP_136592.1| cell division cycle protein 48 [Haloarcula marismortui ATCC 43049] gi|55231467|gb|AAV46886.1| cell division cycle protein 48 [Haloarcula marismortui ATCC 43049] Length = 695 Score = 40.5 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 27/63 (42%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+LVG G GK+ L + +T S A L S+ D + L + ++ + Sbjct: 213 VLLVGAHGVGKTHLLQHVAWLVNATIHSVDAGRLLSLDQDGARAYLDDVARAAQGSERGI 272 Query: 127 FHI 129 HI Sbjct: 273 VHI 275 >gi|28867260|ref|NP_789879.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28867297|ref|NP_789916.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28867430|ref|NP_790049.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28867522|ref|NP_790141.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28868058|ref|NP_790677.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28868085|ref|NP_790704.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28868311|ref|NP_790930.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28868864|ref|NP_791483.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28869522|ref|NP_792141.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28869585|ref|NP_792204.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28869928|ref|NP_792547.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28870191|ref|NP_792810.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28870391|ref|NP_793010.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28870595|ref|NP_793214.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28870767|ref|NP_793386.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28871157|ref|NP_793776.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28871409|ref|NP_794028.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28871758|ref|NP_794377.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28871850|ref|NP_794469.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28871884|ref|NP_794503.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28872479|ref|NP_795098.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28872678|ref|NP_795297.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv. tomato str. DC3000] gi|29171580|ref|NP_808626.1| transposase/IS protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213972300|ref|ZP_03400363.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv. tomato T1] gi|28850494|gb|AAO53574.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28850531|gb|AAO53611.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28850664|gb|AAO53744.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28850757|gb|AAO53836.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28851294|gb|AAO54372.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28851321|gb|AAO54399.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28851548|gb|AAO54625.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28852103|gb|AAO55178.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28852764|gb|AAO55836.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28852827|gb|AAO55899.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28853173|gb|AAO56242.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28853437|gb|AAO56505.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28853638|gb|AAO56705.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28853843|gb|AAO56909.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28854016|gb|AAO57081.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28854407|gb|AAO57471.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28854660|gb|AAO57723.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28855010|gb|AAO58072.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28855103|gb|AAO58164.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28855137|gb|AAO58198.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28855734|gb|AAO58793.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28855934|gb|AAO58992.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28856073|gb|AAO59129.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213922943|gb|EEB56575.1| ISPsy4, transposition helper protein [Pseudomonas syringae pv. tomato T1] gi|330989790|gb|EGH87893.1| transposase/IS protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 269 Score = 40.5 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 41/114 (35%), Gaps = 25/114 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID-------------------T 107 ++ +GPSG GKS LA + ++ + +++ Sbjct: 104 IVFLGPSGVGKSHLAIALAYRAVMAGIKTRFVTAADLMLQLTAAHRQERLKEYFSRVVMA 163 Query: 108 RKPVLLEDIDLLDF--NDTQLFHIINSI--HQYDSSLLMTARTFPVSWGVCLPD 157 +++++I L F ++ LF N + SL++T+ W D Sbjct: 164 PGLLVIDEIGYLPFGRDEANLF--FNVVAKRYEQGSLILTSNLPFTQWAGTFAD 215 >gi|146276860|ref|YP_001167019.1| ATPase central domain-containing protein [Rhodobacter sphaeroides ATCC 17025] gi|145555101|gb|ABP69714.1| AAA ATPase, central domain protein [Rhodobacter sphaeroides ATCC 17025] Length = 715 Score = 40.5 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 40/239 (16%), Positives = 72/239 (30%), Gaps = 55/239 (23%) Query: 46 HSAIEQAVRLIDSWPSWPS---------RVVILVGPSGSGKSCLANI------------- 83 A++ A RL+ W R ++L GP G+GK+ LA Sbjct: 294 GEALKAARRLVADLGLWQEKKLGWNELCRSLLLYGPPGTGKTWLARAMGNSADVGFVAAS 353 Query: 84 ---W-SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIIN-------- 131 W + + + KS + +E+ID + H N Sbjct: 354 FAQWQAAGHLGDMLAAMRKSFADARRQAPSILFIEEIDAVGSRLDSDRHASNYRHQVIAG 413 Query: 132 -------SIHQYDSSLLMTA----RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 + ++ R P DL V++ LPD+ L Sbjct: 414 FLETMDSLSREEGVIVVGACNYPERIDPAVLRAGRFDLK--------VEVPLPDEAILLG 465 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVL 239 ++++ R F D +L A + S + + + LA + + +L Sbjct: 466 ILLRHL--RGTFTDTELRALAQDAVGCSAAEVDAAIRQARALAREEDRPLMLADIRALL 522 >gi|332027262|gb|EGI67346.1| Protein YME1-like protein [Acromyrmex echinatior] Length = 749 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 21/43 (48%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109 V+LVGP G+GK+ LA + ++ F D IL+ Sbjct: 344 VLLVGPPGTGKTLLARAVAGEAGVPFFHVAGPEFDEILVGQGA 386 >gi|328869555|gb|EGG17933.1| 26S protease regulatory subunit S10B [Dictyostelium fasciculatum] Length = 393 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + + ++ ++ I V+ E Sbjct: 170 PPKGVLLYGPPGTGKTLLARAIASNIEANFLKVVSSAIVDKYIGESARVIRE 221 >gi|322800491|gb|EFZ21495.1| hypothetical protein SINV_13651 [Solenopsis invicta] Length = 723 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 21/43 (48%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109 V+LVGP G+GK+ LA + ++ F D IL+ Sbjct: 323 VLLVGPPGTGKTLLARAVAGEAGVPFFHVAGPEFDEILVGQGA 365 >gi|307214991|gb|EFN89836.1| Protein YME1-like protein [Harpegnathos saltator] Length = 776 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 21/43 (48%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109 V+LVGP G+GK+ LA + ++ F D IL+ Sbjct: 359 VLLVGPPGTGKTLLARAVAGEAGVPFFHVAGPEFDEILVGQGA 401 >gi|307184045|gb|EFN70595.1| Protein YME1-like protein [Camponotus floridanus] Length = 753 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 21/43 (48%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109 V+LVGP G+GK+ LA + ++ F D IL+ Sbjct: 336 VLLVGPPGTGKTLLARAVAGEAGVPFFHVAGPEFDEILVGQGA 378 >gi|300741372|ref|ZP_07071393.1| putative ATPase, AFG1 family protein [Rothia dentocariosa M567] gi|300380557|gb|EFJ77119.1| putative ATPase, AFG1 family protein [Rothia dentocariosa M567] Length = 350 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 12/98 (12%) Query: 67 VILVGPSGSGKSC-LANIWSDKSR----------STRFSNIAKSLDSILIDTRKPVLLED 115 + L G G GK+ LA++W + + + K V +++ Sbjct: 87 LYLDGGFGVGKTHLLASLWHYVDGPKAFGTFVEYTNLVGALTFRKTVEALSGYKLVCIDE 146 Query: 116 IDLLDFNDTQLFH-IINSIHQYDSSLLMTARTFPVSWG 152 +L D DT L ++ + L+ T+ T P + G Sbjct: 147 FELDDPGDTVLMSRLMRELADAGVKLVATSNTLPGALG 184 >gi|215500541|gb|EEC10035.1| werner helicase interacting protein, putative [Ixodes scapularis] Length = 400 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 12/23 (52%), Positives = 15/23 (65%) Query: 65 RVVILVGPSGSGKSCLANIWSDK 87 +IL GP G GK+ LA+I S K Sbjct: 37 PSMILWGPPGCGKTTLAHIISQK 59 >gi|148652069|ref|YP_001279162.1| recombination factor protein RarA [Psychrobacter sp. PRwf-1] gi|148571153|gb|ABQ93212.1| Recombination protein MgsA [Psychrobacter sp. PRwf-1] Length = 439 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 62/187 (33%), Gaps = 29/187 (15%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS---------------TRFSNIAKSLDSILIDTRK 109 +IL G +G GK+ +A + +D + S +D Sbjct: 50 PSLILHGEAGIGKTTIAMLLADAVGRPFYPLSAINTGVKQLREVLDAGSSSGQGGLDFAS 109 Query: 110 PVL-LEDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 PV+ +++I + L + L+ A T S+ V L SR V Sbjct: 110 PVVFIDEIHRFNKAQQDALL----GAVESGDITLIGATTENPSFSVNNA-LLSR---CQV 161 Query: 168 VKISLPDDDFLEKVIVKMFADR----QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 ++ DD + +++ + + Q+ ID + I + A L++ + Sbjct: 162 YRLQPLDDTQIGELLQRALSQDEFLSQLSIDLQALPQIANLAQGDARKALNLLEMAVQAS 221 Query: 224 LSRGMGI 230 I Sbjct: 222 DHSKQPI 228 >gi|71027749|ref|XP_763518.1| cell division cycle protein 48 [Theileria parva strain Muguga] gi|68350471|gb|EAN31235.1| cell division cycle protein 48, putative [Theileria parva] Length = 954 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 11/28 (39%), Positives = 19/28 (67%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRS 90 P + VIL GP GSGK+ +A ++++ + Sbjct: 398 PPKGVILHGPPGSGKTLVARAIANETGA 425 >gi|314922407|gb|EFS86238.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL001PA1] Length = 717 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 50/165 (30%), Gaps = 47/165 (28%) Query: 67 VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110 V+L GP G+GK+ LA + ++ S + + Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAPAI 262 Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + D + L + ++ +L+ A P L Sbjct: 263 IFIDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDVRGGVILIAATNRPDVLDPAL 322 Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVK 184 PDL RLK V P DD L + + Sbjct: 323 LRPGRFDRQIAVEAPDLDGRLKILKVHAHGKPMADDVDLASIARR 367 >gi|311113454|ref|YP_003984676.1| ATP/GTP-binding protein [Rothia dentocariosa ATCC 17931] gi|310944948|gb|ADP41242.1| ATP/GTP-binding protein [Rothia dentocariosa ATCC 17931] Length = 350 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 12/98 (12%) Query: 67 VILVGPSGSGKSC-LANIWSDKSR----------STRFSNIAKSLDSILIDTRKPVLLED 115 + L G G GK+ LA++W + + + K V +++ Sbjct: 87 LYLDGGFGVGKTHLLASLWHYVDGPKAFGTFVEYTNLVGALTFRKTVEALSGYKLVCIDE 146 Query: 116 IDLLDFNDTQLFH-IINSIHQYDSSLLMTARTFPVSWG 152 +L D DT L ++ + L+ T+ T P + G Sbjct: 147 FELDDPGDTVLMSRLMRELADAGVKLVATSNTLPGALG 184 >gi|268608356|ref|ZP_06142083.1| hypothetical protein RflaF_02525 [Ruminococcus flavefaciens FD-1] Length = 606 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 58/195 (29%), Gaps = 49/195 (25%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 +LVGP G+GK+ LA + ++ FS + + Sbjct: 199 ALLVGPPGTGKTLLAQAVAGEAEVPFFSISGSEFVEMFVGMGAAKVRDLFSQAVEKAPCI 258 Query: 111 VLLEDID--------LLDFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW----- 151 V +++ID + ND QL ++ +++ A P S Sbjct: 259 VFIDEIDTIGKKRDGQIGGNDEREQTLNQLLTEMDGFDGKKGVVILAATNRPESLDPALL 318 Query: 152 ---------GVCLPDLCSRLKAATVV---KISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199 V LPDL R +A V KI L D + + + Sbjct: 319 RPGRFDRRIPVELPDLAGR-EAILNVHAQKIKLTDGIDFNAIARATAGASGAEL-ANIIN 376 Query: 200 YIVQRMERSLVFAEK 214 R R+ A Sbjct: 377 EAALRAVRNGRSAVD 391 >gi|241958488|ref|XP_002421963.1| 26S protease subunit, putative [Candida dubliniensis CD36] gi|223645308|emb|CAX39964.1| 26S protease subunit, putative [Candida dubliniensis CD36] Length = 429 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + + + A ++ I ++ E Sbjct: 206 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIRE 257 >gi|195145904|ref|XP_002013930.1| GL24409 [Drosophila persimilis] gi|194102873|gb|EDW24916.1| GL24409 [Drosophila persimilis] Length = 569 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 16/89 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G+GK+ LA + + T L I ++ E Sbjct: 186 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRE------------ 233 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCL 155 + ++ L+++ T W L Sbjct: 234 --LFVMAREHAR--LLSSWTRSTRWLGSL 258 >gi|209884845|ref|YP_002288702.1| AAA ATPase, central region [Oligotropha carboxidovorans OM5] gi|209873041|gb|ACI92837.1| AAA ATPase, central region [Oligotropha carboxidovorans OM5] Length = 443 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 40/242 (16%), Positives = 74/242 (30%), Gaps = 52/242 (21%) Query: 9 SFFVPDKQKNDQPKN-----KEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP 63 + F + D P+ + QL + + D L + Sbjct: 11 NLFAAAGLEQDAPRPLPERLRPRQLSDVVGQDHILGPDG-----------ALTRMLETRT 59 Query: 64 SRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 ++ GP G+GK+ +A + +D + + S + + + Sbjct: 60 LGSLVFWGPPGTGKTTVARLLADATELHFEQISAVFSGVADLKKVFDTA----RARRETG 115 Query: 122 NDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATV 167 T LF H N + + +L+ T L SR A V Sbjct: 116 KGTLLFVDEVHRFNRAQQDSFLPVMEDGTVVLVGATTENPSFELNAA---LLSR---ARV 169 Query: 168 VKISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 + DD I K++A R + +D A +V+ + A LV+++ Sbjct: 170 LVFHSLDD----AAIEKLYARAEEIEGRPLPLDADARAVLVRMADGDGRAALTLVEEVWR 225 Query: 222 LA 223 A Sbjct: 226 AA 227 >gi|150396236|ref|YP_001326703.1| recombination factor protein RarA [Sinorhizobium medicae WSM419] gi|150027751|gb|ABR59868.1| AAA ATPase central domain protein [Sinorhizobium medicae WSM419] Length = 436 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 61/182 (33%), Gaps = 28/182 (15%) Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDID 117 S +I GP G+GK+ +A + S ++ + S I + + Sbjct: 49 ASGSLGSMIFWGPPGTGKTTVARLLSGEAGLAFEQISAIFSGVADLKKVFESA----RAR 104 Query: 118 LLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLK 163 + T LF H N + + +L+ T L SR Sbjct: 105 RMSGRQTLLFVDEIHRFNRAQQDSFLPVIEDGTVILVGATTENPSFELNAA---LLSR-- 159 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 A V+ D+ LE+++ + A + +D A +++ + L +++ Sbjct: 160 -ARVLTFKPHDESSLEELLKRAEAAEGKSLPLDGDARASLIRMADGDGRAILTLAEEVWR 218 Query: 222 LA 223 A Sbjct: 219 AA 220 >gi|146298174|ref|YP_001192765.1| recombination factor protein RarA [Flavobacterium johnsoniae UW101] gi|146152592|gb|ABQ03446.1| AAA ATPase, central domain protein [Flavobacterium johnsoniae UW101] Length = 425 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 56/149 (37%), Gaps = 29/149 (19%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS---------------TRFSNIAKSLDSILIDTRK 109 +I GP G+GK+ LA I + +S+ AK + Sbjct: 40 PSLIFWGPPGTGKTTLAQIIAQESKRPFYELSAINSGVKDIRDVIEKAKQSGGLFTAKNP 99 Query: 110 PVLLEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168 + +++I + L + + L+ A T S+ V +P L SR + V Sbjct: 100 ILFIDEIHRFSKSQQDSLL----AAVEKGWITLIGATTENPSFEV-IPALLSR---SQVY 151 Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKL 197 ++ D LE ++ R I IDK+L Sbjct: 152 ILNAFTKDDLEALL-----HRAIKIDKEL 175 >gi|82750218|ref|YP_415959.1| cell division protein [Staphylococcus aureus RF122] gi|82655749|emb|CAI80148.1| cell division protein [Staphylococcus aureus RF122] Length = 697 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 24/56 (42%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 V+LVGP G+GK+ LA + ++ + S + + + + D N Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFLSISGSDFVEMFVGVGASRVRDLFDNAKKN 256 >gi|17554264|ref|NP_499298.1| YME1-Like (Yeast Mitochondrial Escape) AAA protease family member (ymel-1) [Caenorhabditis elegans] Length = 676 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 25/53 (47%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 V+LVGP G+GK+ LA + +++ F D +L+ + + D Sbjct: 237 VLLVGPPGTGKTLLARAIAGEAQVPFFHTAGSEFDEVLVGQGARRVRDLFDKA 289 >gi|88808601|ref|ZP_01124111.1| hypothetical protein WH7805_02887 [Synechococcus sp. WH 7805] gi|88787589|gb|EAR18746.1| hypothetical protein WH7805_02887 [Synechococcus sp. WH 7805] Length = 637 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 35/204 (17%), Positives = 68/204 (33%), Gaps = 45/204 (22%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ FS + + Sbjct: 217 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEMFVGVGASRVRDLFKRAKENSPCL 276 Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + ND QL ++ +++ A P L Sbjct: 277 IFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEGNSGIIIIAATNRPDVLDSAL 336 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 ++ V + PD ++ ++++ D L I +R A Sbjct: 337 ------MRPGRFDRQVTVDAPDIKGRLSILEVHSRNKKLDPDLSL-DSIARRTP-GFTGA 388 Query: 213 EKLVDKMDNLAL--SRGMGITRSL 234 L + ++ A+ +R T SL Sbjct: 389 -DLANLLNEAAILTARRRKETISL 411 >gi|116621115|ref|YP_823271.1| AAA ATPase [Candidatus Solibacter usitatus Ellin6076] gi|116224277|gb|ABJ82986.1| AAA ATPase [Candidatus Solibacter usitatus Ellin6076] Length = 252 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 10/25 (40%), Positives = 16/25 (64%) Query: 57 DSWPSWPSRVVILVGPSGSGKSCLA 81 D +P P ++L+G G+GK+ LA Sbjct: 81 DEFPLGPYPGLLLIGEPGTGKTHLA 105 >gi|327400885|ref|YP_004341724.1| Proteasome-activating nucleotidase [Archaeoglobus veneficus SNP6] gi|327316393|gb|AEA47009.1| Proteasome-activating nucleotidase [Archaeoglobus veneficus SNP6] Length = 409 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + +++T + I ++ E Sbjct: 184 PPKGVLLYGPPGTGKTLLAKAVAHHTQATFIRIVGSEFVQKYIGEGARLVRE 235 >gi|325189539|emb|CCA24026.1| vacuolar protein sortingassociating protein putative [Albugo laibachii Nc14] Length = 458 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 24/38 (63%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P R ++L GP G+GKS LA + ++ ST F+ + +L Sbjct: 154 PWRGILLYGPPGTGKSYLAKAVATEADSTFFAVSSATL 191 >gi|255638632|gb|ACU19621.1| unknown [Glycine max] Length = 259 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 22/137 (16%), Positives = 42/137 (30%), Gaps = 45/137 (32%) Query: 70 VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113 GP G+GK+ LA ++++ + I L + ++ Sbjct: 41 YGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFF 100 Query: 114 EDIDLLDFN------------DTQLFHIINSIHQYDSS----LLMTARTF----PVSW-- 151 +++D + + I+N + +D+ +LM P Sbjct: 101 DEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGTIKVLMATNRPDTLDPALLRP 160 Query: 152 -------GVCLPDLCSR 161 LPDL SR Sbjct: 161 GRLDRKVEFGLPDLESR 177 >gi|219851454|ref|YP_002465886.1| AAA family ATPase, CDC48 subfamily [Methanosphaerula palustris E1-9c] gi|219545713|gb|ACL16163.1| AAA family ATPase, CDC48 subfamily [Methanosphaerula palustris E1-9c] Length = 806 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 23/166 (13%), Positives = 60/166 (36%), Gaps = 39/166 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106 P + V+L GP G+GK+ +A +++ + + N+ + + + Sbjct: 220 PPKGVLLYGPPGTGKTLIAKAVANEVDAHFITLSGPEIISKYYGESEGNLRQVFEEAQQN 279 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + +++ A P + Sbjct: 280 APTIIFIDEIDSIAPKREDTKGEVERRVVAQLLALMDGLKGRGEVIVIAATNLPDALD-- 337 Query: 155 LPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L + ++I +PD + E + R + + + + Sbjct: 338 -PALR---RGGRFDREIEIGIPDRNGREDIFKVHT--RGVPLAEDV 377 >gi|147676766|ref|YP_001210981.1| ATPase [Pelotomaculum thermopropionicum SI] gi|146272863|dbj|BAF58612.1| ATPase [Pelotomaculum thermopropionicum SI] Length = 638 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 20/38 (52%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P R VIL GP G+GK+ LA + + + + SL Sbjct: 407 PPRGVILHGPPGTGKTLLARALASEINANFIAVKGPSL 444 Score = 37.8 bits (87), Expect = 1.5, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 41/121 (33%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109 P R V+L GP G+GK+ +A + ++++ L I Sbjct: 134 PPRGVLLYGPPGTGKTLIARAVAGETKACFIHVNGPEIIHKYYGESEARLREIFQKAAGN 193 Query: 110 ---PVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + L++ID + QL +++ + +++ A P + Sbjct: 194 RPSIIFLDEIDAVAPKREEVTGEVEKRVVAQLLALMDGLKSRGQVIVIGATNLPNAIDPA 253 Query: 155 L 155 L Sbjct: 254 L 254 >gi|126731706|ref|ZP_01747511.1| putative acetoin catabolism regulatory protein [Sagittula stellata E-37] gi|126707872|gb|EBA06933.1| putative acetoin catabolism regulatory protein [Sagittula stellata E-37] Length = 594 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 60/151 (39%), Gaps = 18/151 (11%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNI---AKSLDSILIDTRKPVLLEDIDLLD-FN 122 ++L G SG+GK LA + F + + D++ + L ID LD Sbjct: 365 LLLTGESGTGKERLARAIHMSGPARAFHAVRCAGAAFDTLEDAAPGTLFLRGIDDLDSKA 424 Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVC---LPDLCSRLKAATVVKISLP------ 173 L +I + D ++ +AR + DL RL A ++ LP Sbjct: 425 QAALLTLI--ERREDLRVIASARMPLATRLAEGSFRDDLYYRLSGA---RLDLPPLRLRH 479 Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 D D+L +++ FA + + + A ++ R Sbjct: 480 DTDWLIDRLMRPFAADGMRLSPQARAELLAR 510 >gi|119952443|ref|YP_949925.1| transposase [Arthrobacter aurescens TC1] gi|119951573|gb|ABM10483.1| IS21 family element, transposase istB [Arthrobacter aurescens TC1] Length = 267 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 50/152 (32%), Gaps = 47/152 (30%) Query: 30 FSFPRCLGISRD--------DLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 F F G+ RD D +V V+ +GP G+GK+ LA Sbjct: 86 FDFDHARGLKRDLIAHLGTLDFVVAREN-----------------VVFLGPPGTGKTHLA 128 Query: 82 ---NIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------VLLEDIDLLDFND 123 I + ++ A + L + ++++++ + F Sbjct: 129 IGLAIRACQAGHRVLFATASEWVARLAEAHHAGRLHDELVRLGRYPLLVVDEVGYIPFEP 188 Query: 124 TQ---LFHIINSIHQYDSSLLMTARTFPVSWG 152 F ++ S +SL++T+ WG Sbjct: 189 EAANLFFQLV-SSRYERASLIVTSNKPFGRWG 219 >gi|111024084|ref|YP_707056.1| recombination factor protein RarA [Rhodococcus jostii RHA1] gi|110823614|gb|ABG98898.1| ATPase related to the helicase subunit of the Holliday junction resolvase [Rhodococcus jostii RHA1] Length = 478 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 23/154 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G+GK+ LA++ S + RF ++ +L + + + R + L LL T L Sbjct: 82 VLLYGPPGTGKTTLASLISGATG-RRFEALS-ALSAGVKEVRGVIELARRRLLAGEQTVL 139 Query: 127 F----HIIN--------SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H + + + LL+ A T S+ V P L SR + V+++ Sbjct: 140 FIDEVHRFSKTQQDALLAAVENRIVLLVAATTENPSFSVVSP-LLSR---SLVLQLQSLT 195 Query: 175 DDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQ 203 D +E ++ + D R + I ++V+ Sbjct: 196 ADDIENLLERARTDERGLGGEIEIAGDAMDHLVR 229 >gi|19746896|ref|NP_608032.1| recombination factor protein RarA [Streptococcus pyogenes MGAS8232] gi|94995187|ref|YP_603285.1| recombination factor protein RarA [Streptococcus pyogenes MGAS10750] gi|19749141|gb|AAL98531.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232] gi|94548695|gb|ABF38741.1| ATPase, AAA family [Streptococcus pyogenes MGAS10750] Length = 422 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 59/166 (35%), Gaps = 22/166 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST---------RFSNIAKSLDSILIDTRKPVLLEDID 117 +IL GP G GK+ +A+ + +R + + + +LL++I Sbjct: 42 MILYGPPGIGKTSIASAIAGTTRYAFRTFNATIDSKKRLQEIAEEAKFSGGLVLLLDEIH 101 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 LD + +++M T + P + SR + ++ ++ Sbjct: 102 RLDKTKQDFL----LPLLENGTIIMIGATTENPFFSVTPAIRSR---VQIFELEPLSNED 154 Query: 178 LEKVIVKMFAD--RQ----IFIDKKLAAYIVQRMERSLVFAEKLVD 217 ++ I +D R + ID + +IV L A +D Sbjct: 155 IKTAIQLAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLD 200 >gi|318605179|emb|CBY26677.1| ISPsy4, transposition helper protein [Yersinia enterocolitica subsp. palearctica Y11] Length = 241 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 21/107 (19%) Query: 65 RVVILVGPSGSGKSCLANI----WSDKSRSTRFSNIAKSLDSILIDTRK----------- 109 R +I VG G+GK+ LA + RF N+ ++ + +D Sbjct: 99 RNIIFVGGPGTGKTHLATALGINAATNGFKVRFWNVLDLVNKLELDKESKQFKLTNQLTK 158 Query: 110 --PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSW 151 ++L+D+ L F+ LFH+I+ +H++ +S+++T W Sbjct: 159 LDLIVLDDLGYLPFSQKGGALLFHLISQLHEH-TSIMITTNLAFSEW 204 >gi|308234464|ref|ZP_07665201.1| ATP-dependent metalloprotease FtsH [Atopobium vaginae DSM 15829] gi|328944311|ref|ZP_08241775.1| cell division protein FtsH [Atopobium vaginae DSM 15829] gi|327491230|gb|EGF23005.1| cell division protein FtsH [Atopobium vaginae DSM 15829] Length = 635 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 38/241 (15%), Positives = 79/241 (32%), Gaps = 62/241 (25%) Query: 47 SAIEQAVRLIDSWPSWPS------RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 ++ + V +D+ + + + +LVGP G+GK+ LA + +++ F Sbjct: 194 DSLREIVSFLDNPKKYAAIGARCPKGALLVGPPGTGKTLLARAVAGEAKVPFFQISGSEF 253 Query: 101 DSILIDTRKP----------------VLLEDIDLLDF---------ND-----TQLFHII 130 + + + ++++D + ++ QL + Sbjct: 254 VEMFVGRGAAKVRDLFKQAKEKAPCIIFIDELDTVGKKRGVSVNSNDEREQTLNQLLAEM 313 Query: 131 NSIHQYDSSLLMTARTFPVSW--------------GVCLPDLCSRLKAATVVKISLPDDD 176 + + +++ A P + V LPDL R ++K+ D Sbjct: 314 DGFDNHKGIVVLAATNRPETLDLALLRPGRFDRRIPVELPDLTGR---EAILKLHASD-V 369 Query: 177 FLEKVIVKMFADRQI--FIDKKLAAYI------VQRMERSLVFAEKLVDKMDNLALSRGM 228 +E+ I RQ LA I RM RS V + + +D + Sbjct: 370 KMEQGIDFAQVARQTPGTSGADLANMINEAALRAVRMGRSRVSQSDIEESVDVVVAGEKK 429 Query: 229 G 229 Sbjct: 430 K 430 >gi|242782157|ref|XP_002479944.1| proteasome regulatory particle subunit Rpt5, putative [Talaromyces stipitatus ATCC 10500] gi|218720091|gb|EED19510.1| proteasome regulatory particle subunit Rpt5, putative [Talaromyces stipitatus ATCC 10500] Length = 466 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 53/160 (33%), Gaps = 38/160 (23%) Query: 70 VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113 GP G+GK+ LA + ++ +T L + I ++ + Sbjct: 252 YGPPGTGKTLLARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPSIIFI 311 Query: 114 EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158 +++D + + ++N D ++ A L L Sbjct: 312 DELDAVGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRVKVLAATNRVDVLDPAL--L 369 Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 S RL ++ LP+++ +++ R++ D + Sbjct: 370 RSGRLD--RKIEFPLPNEEARAQILQ--IHSRKMTTDDGV 405 >gi|212537357|ref|XP_002148834.1| mitochondrial AAA ATPase, putative [Penicillium marneffei ATCC 18224] gi|210068576|gb|EEA22667.1| mitochondrial AAA ATPase, putative [Penicillium marneffei ATCC 18224] Length = 1415 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 21/45 (46%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109 ++L GP G+GK+ LA + +S +T + + + + Sbjct: 707 PGMLLYGPPGTGKTLLAKAVARESGATVLEVSGSDIYDMYVGEGE 751 >gi|47087311|ref|NP_998649.1| nuclear valosin-containing protein-like [Danio rerio] gi|27881916|gb|AAH44464.1| Nuclear VCP-like [Danio rerio] Length = 796 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 56/168 (33%), Gaps = 42/168 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P R +L GP G GK+ LA + ++ A L + + Sbjct: 259 PPRGFLLHGPPGCGKTLLAQAVAGETALPLLKISAPELVSGVSGESEQKLRELFEQAISS 318 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151 + +++ID + QL + NS+ + L++ A P S Sbjct: 319 APCILFIDEIDAITPKRETASKDMERRIVAQLLTCMDDLNSMLEPAQVLVIGATNRPDSL 378 Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKK 196 L +A + + +PD+ K++ + R+I + Sbjct: 379 DPALR------RAGRFDREICLGIPDEGARMKILKTLC--RKIRLPDD 418 Score = 36.7 bits (84), Expect = 2.9, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 21/46 (45%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 ++L GP G GK+ LA ++ S S L ++ + + + Sbjct: 557 LLLAGPPGCGKTLLAKAVANASGLNFISVKGPELLNMYVGESERAV 602 >gi|77459806|ref|YP_349313.1| recombination factor protein RarA [Pseudomonas fluorescens Pf0-1] gi|77383809|gb|ABA75322.1| conserevd hypothetical protein [Pseudomonas fluorescens Pf0-1] Length = 441 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 31/187 (16%), Positives = 62/187 (33%), Gaps = 30/187 (16%) Query: 57 DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 ++ +I GP G GK+ LA + ++ S + + A I + + Sbjct: 41 EALEQGALHSMIFWGPPGVGKTTLARLLAEVSDAHFETVSAVLAGVKEIRQAVEIAKQQA 100 Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162 T LF H N Q D +L+ T L SR Sbjct: 101 GQYGKR-TILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 155 Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLV 216 A V + D+ L K++ + + R + + + ++ + +L+ Sbjct: 156 --ARVYVLKSLDEAALRKLVHRALTEERGLGKRHLTLSDEGFQMLLSAAD---GDGRRLL 210 Query: 217 DKMDNLA 223 + ++N + Sbjct: 211 NLLENAS 217 >gi|328955416|ref|YP_004372749.1| ATP-dependent metalloprotease FtsH [Coriobacterium glomerans PW2] gi|328455740|gb|AEB06934.1| ATP-dependent metalloprotease FtsH [Coriobacterium glomerans PW2] Length = 651 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 46/142 (32%), Gaps = 45/142 (31%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110 R +LVGP G+GK+ +A + ++ FS + + Sbjct: 215 RGALLVGPPGTGKTLMAKAVAGEAGVPFFSISGSEFVEMFVGRGAAKVRDLFKQANEKAP 274 Query: 111 --VLLEDIDLLD---------FNDT------QLFHIINSIHQYDSSLLMTARTFPVSW-- 151 V +++ID + ND QL ++ + +++ A P + Sbjct: 275 CIVFIDEIDTIGKRRDGGGISGNDEREQTLNQLLTEMDGFDNHKGIVVIAATNRPDTLDP 334 Query: 152 ------------GVCLPDLCSR 161 V LPDL R Sbjct: 335 ALLRPGRFDRRIPVELPDLAGR 356 >gi|300710281|ref|YP_003736095.1| proteasome-activating nucleotidase [Halalkalicoccus jeotgali B3] gi|299123964|gb|ADJ14303.1| proteasome-activating nucleotidase [Halalkalicoccus jeotgali B3] Length = 387 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 29/64 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P V+L GP G+GK+ LA ++++ +T L I ++ + +L + Sbjct: 166 PPGGVLLHGPPGTGKTMLAKAVANETDATFIKMAGSELVQKFIGEGSRLVRDLFELAREH 225 Query: 123 DTQL 126 + + Sbjct: 226 EPAI 229 >gi|302501127|ref|XP_003012556.1| hypothetical protein ARB_01169 [Arthroderma benhamiae CBS 112371] gi|291176115|gb|EFE31916.1| hypothetical protein ARB_01169 [Arthroderma benhamiae CBS 112371] Length = 434 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 14/80 (17%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + ++L GP G+GKS LA + +++ST FS + L S + + ++ Sbjct: 164 PWKGILLYGPPGTGKSYLAKAVATEAKSTFFSVSSSDLVSKWMGESERLV---------- 213 Query: 123 DTQLFHIINSIHQYDSSLLM 142 QLF N + +++ Sbjct: 214 -KQLF---NMARENKPAIVF 229 >gi|288555343|ref|YP_003427278.1| Holliday junction DNA helicase RuvB [Bacillus pseudofirmus OF4] gi|288546503|gb|ADC50386.1| Holliday junction DNA helicase RuvB [Bacillus pseudofirmus OF4] Length = 333 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 36/191 (18%), Positives = 68/191 (35%), Gaps = 31/191 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G GK+ L+ I + + + +++ LE D+L ++ Sbjct: 56 VLLYGPPGLGKTTLSGIIASEMGVEMRTTSGPAIERPGDLAAILTALEPGDVLFIDEI-- 113 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCL-------PDLCS-RLKAATVVKISLPDDD-F 177 H +N + + +L P CL P S RL + Sbjct: 114 -HRLNRMVEE---VLY-----PAMEDFCLDIVIGKGPTARSVRLDLPPFTLVGATTRAGM 164 Query: 178 LEKVIVKMF--ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA---LSRGMGITR 232 L + F R + + A+IV+R + ++D+ A ++R T Sbjct: 165 LSAPLRDRFGVMARLEYYTEAELAFIVKRT----ASIFET--ELDDEAALEIARRSRGTP 218 Query: 233 SLAAEVLKETQ 243 +A +L+ + Sbjct: 219 RIANRLLRRVR 229 >gi|258542798|ref|YP_003188231.1| recombination factor protein RarA [Acetobacter pasteurianus IFO 3283-01] gi|256633876|dbj|BAH99851.1| AAA ATPase [Acetobacter pasteurianus IFO 3283-01] gi|256636935|dbj|BAI02904.1| AAA ATPase [Acetobacter pasteurianus IFO 3283-03] gi|256639988|dbj|BAI05950.1| AAA ATPase [Acetobacter pasteurianus IFO 3283-07] gi|256643044|dbj|BAI08999.1| AAA ATPase [Acetobacter pasteurianus IFO 3283-22] gi|256646099|dbj|BAI12047.1| AAA ATPase [Acetobacter pasteurianus IFO 3283-26] gi|256649152|dbj|BAI15093.1| AAA ATPase [Acetobacter pasteurianus IFO 3283-32] gi|256652139|dbj|BAI18073.1| AAA ATPase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655196|dbj|BAI21123.1| AAA ATPase [Acetobacter pasteurianus IFO 3283-12] Length = 453 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 28/203 (13%), Positives = 66/203 (32%), Gaps = 49/203 (24%) Query: 67 VILVGPSGSGKSCLANIWSDKSR-------------STRFSNIAKSLDSILIDTRKPVLL 113 +IL G G GK+ +A + + + + + I + + Sbjct: 76 LILWGGPGVGKTTIARLLAQAAGLKFVQLSAVFSGVADLKKAFENARRQAEIGGGTLLFV 135 Query: 114 EDIDLLDFNDTQLFHIINSIHQYD-------SSLLM---TARTFPVSWGVCLPDLCSRLK 163 ++I H N Q ++++ T + L SR Sbjct: 136 DEI-----------HRFNRAQQDGFLPVVEDGTVVLVGATTENPSFALNSA---LLSR-- 179 Query: 164 AATVVKISLPDDDFLEKVIVKMFAD--RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 V+ ++ DD E ++V+ + R + + + + + + +V+++ Sbjct: 180 -CQVMVLNRLDDPACEALLVRAEEETGRPLPLTEDGRVTLRAMADGDGRYLLNMVEQL-- 236 Query: 222 LALSRGMG-----ITRSLAAEVL 239 L+L ++R LA + Sbjct: 237 LSLKTEKPLDAQALSRLLAKRAI 259 >gi|291615033|ref|YP_003525190.1| ATPase AAA [Sideroxydans lithotrophicus ES-1] gi|291585145|gb|ADE12803.1| AAA ATPase central domain protein [Sideroxydans lithotrophicus ES-1] Length = 437 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 28/186 (15%), Positives = 57/186 (30%), Gaps = 23/186 (12%) Query: 58 SWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID 117 ++ S +IL GP G GK+ LA + + + F ++ L + E Sbjct: 42 AFQSGKLHSMILWGPPGVGKTTLARLMASAFDAE-FVPLSAVLSGVKDIREAIAQAEATL 100 Query: 118 LLDFNDTQLF----HIINSIHQYD----------SSLLMTARTFPVSWGVCLPDLCSRLK 163 T LF H N Q + + T L SR Sbjct: 101 QQSGRHTILFVDEVHRFNKSQQDAFLPFVEQGLVTFIGATTENPSFELNNA---LLSR-- 155 Query: 164 AATVVKISLPDDDFLEKVIVK--MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 A V + + + ++ + A + + D ++ + +++++ Sbjct: 156 -AQVYVLQSLSEAEMGQLFERAQQVALQGLEFDAAAKERVIGYADGDARRLLNVLEQLQT 214 Query: 222 LALSRG 227 A + Sbjct: 215 AAQAAK 220 >gi|207722722|ref|YP_002253158.1| transposition helper protein [Ralstonia solanacearum MolK2] gi|206587904|emb|CAQ18486.1| putative transposition helper protein [Ralstonia solanacearum MolK2] Length = 476 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 23/162 (14%), Positives = 53/162 (32%), Gaps = 46/162 (28%) Query: 51 QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110 ++ I+ + V+L+GPSG GK+ +A+ + ++ + +++ Sbjct: 93 ASLAFIERAEN-----VVLLGPSGVGKTHIASALAYRATQAGIKTRFITAADLMMQLATA 147 Query: 111 -------------------VLLEDIDLLDF--NDTQLFHIINSI--HQYDSSLLMTARTF 147 +++++I L F + LF N + ++++T+ Sbjct: 148 RQQNRLREFFNRAVIGPRLLVIDEIGYLPFGREEADLF--FNVVAKRYERGAIVLTSNLP 205 Query: 148 PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 W D D ++ FA R Sbjct: 206 FTQWATAFAD----------------DQTLTAAMLDMAFASR 231 >gi|161485713|ref|NP_642336.2| recombination factor protein RarA [Xanthomonas axonopodis pv. citri str. 306] Length = 457 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 37/200 (18%), Positives = 65/200 (32%), Gaps = 31/200 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA + + + + F I+ L + + VL E + Sbjct: 62 MILWGPPGCGKTTLALLLAHYADAE-FKAISAVLSGLPDVRQ--VLAEAAQRFAGGRRTV 118 Query: 127 F-----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKIS 171 H N Q ++L T L SR + + +S Sbjct: 119 LFVDEVHRFNKAQQDAFLPHIERGTILFVGATTENPSFELNSA---LLSRCRVHVLEGVS 175 Query: 172 LPD--DDFLEKVIVKMFADRQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 D + + A+R + + + I + + A L++ LA Sbjct: 176 PQDIVEALQRAL---RDAERGLGAETIQVSEASLLEIASAADGDVRRALTLLEIAAELAA 232 Query: 225 SRGMGITRSLAAEVLKETQQ 244 G IT +VL + + Sbjct: 233 GEGGEITPQTLLQVLADRTR 252 >gi|54298649|ref|YP_125018.1| hypothetical protein lpp2713 [Legionella pneumophila str. Paris] gi|53752434|emb|CAH13866.1| hypothetical protein lpp2713 [Legionella pneumophila str. Paris] Length = 360 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 27/122 (22%) Query: 57 DSWPSW----PSRVVILVGPSGSGKSCLA-----------------NIWSDKSRS--TRF 93 DSW W P + + + GP G GK+ L + + + + R Sbjct: 41 DSWFPWRKKHPIKGLYIYGPVGVGKTYLVDLFYQHIDEEKKARFHFHHFMQQIDAQLRRL 100 Query: 94 SNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ----LFHIINSIHQYDSSLLMTARTFPV 149 L I + K + L D +D L ++ ++H Y L++++ T P Sbjct: 101 QGKKNPLQYIAKEMAKSIRLLCFDEFLVHDVAYAMILAELLQALHHYGVVLVVSSNTPPD 160 Query: 150 SW 151 Sbjct: 161 EL 162 >gi|18416240|ref|NP_567691.1| FtsH protease, putative [Arabidopsis thaliana] gi|2262118|gb|AAB63626.1| cell division protein isolog [Arabidopsis thaliana] gi|4972098|emb|CAB43894.1| cell division protein-like [Arabidopsis thaliana] gi|7269243|emb|CAB81312.1| cell division protein-like [Arabidopsis thaliana] gi|332659430|gb|AEE84830.1| FtsH extracellular protease [Arabidopsis thaliana] Length = 946 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 34/100 (34%), Gaps = 21/100 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110 P V+L GP G GK+ +A + ++ + +L+ Sbjct: 462 PPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVN 521 Query: 111 ----VLLEDIDLLDFNDTQLF-----HIINSIHQYDSSLL 141 + +++ID L +F + N+ Q + L Sbjct: 522 KPSVIFIDEIDALATRRQGIFKENSDQLYNAATQERETTL 561 >gi|325273411|ref|ZP_08139666.1| recombination factor protein RarA [Pseudomonas sp. TJI-51] gi|324101456|gb|EGB99047.1| recombination factor protein RarA [Pseudomonas sp. TJI-51] Length = 441 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 50/150 (33%), Gaps = 22/150 (14%) Query: 57 DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 ++ +I GP G GK+ LA + + + F ++ L + + + + Sbjct: 40 EALEQGALHSMIFWGPPGVGKTTLARLLAQFCDAH-FETVSAVLAGVKEIRQAVEVAKQQ 98 Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162 T LF H N Q D +LL T L SR Sbjct: 99 AGQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTLLFIGATTENPSFELNNA---LLSR- 154 Query: 163 KAATVVKISLPDDDFLEKVIVKMF-ADRQI 191 A V + D+ L K++ + DR + Sbjct: 155 --ARVYVLKSLDEAALRKLVDRALTEDRGL 182 >gi|312864415|ref|ZP_07724648.1| recombination factor protein RarA [Streptococcus downei F0415] gi|311100136|gb|EFQ58347.1| recombination factor protein RarA [Streptococcus downei F0415] Length = 426 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 26/176 (14%), Positives = 62/176 (35%), Gaps = 25/176 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST---------RFSNIAKSLDSILIDTRKPVLLEDID 117 +IL GP G GK+ +A+ + ++ + + + ++L++I Sbjct: 42 MILYGPPGIGKTSIASAIAGTTKFAFRTFNATTDSKKRLQEIAEEAKFSGGLVLMLDEIH 101 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 LD + + + +++ A T + V P + SR + ++ D Sbjct: 102 RLDKTKQDFLLP---LLENGNIIMIGATTENPFFSVT-PAIRSR---VQIFELEPLSPDD 154 Query: 178 LEKVIVKMFAD--RQ----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 ++ + + +D R I +D +I ++ ++ LS Sbjct: 155 IKTALKRAISDKERGFDFDIKLDDDALDFIATATN---GDLRSALNSLELAVLSTQ 207 >gi|293363752|ref|ZP_06610494.1| Holliday junction DNA helicase RuvB [Mycoplasma alligatoris A21JP2] gi|292552673|gb|EFF41441.1| Holliday junction DNA helicase RuvB [Mycoplasma alligatoris A21JP2] Length = 314 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 37/191 (19%), Positives = 79/191 (41%), Gaps = 34/191 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS----TRFSNIAKSLDSILI----DTRKPVLLEDIDL 118 ++L GP G+GK+ LA I + +S + SNI K D I I + + ++++ Sbjct: 40 ILLYGPPGTGKTSLAGIIASAQKSFIHYVQASNIEKKSDLISIFSTLNQGDILFIDEVHS 99 Query: 119 LDFNDTQLFHIINSI-----------HQYDSSL--------LMTARTFPVSWGVCLPDLC 159 L+ +L + N++ ++ L+ A T + L D Sbjct: 100 LNKMIEEL--LYNAMEDFVFDVIIGTEDNAKTMRMKIKPFTLIAATTKINNISQPLKD-- 155 Query: 160 SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 + V K+ +D L K++ + ++ + + A YIV ++ A L+ ++ Sbjct: 156 ---RFGLVGKMHNYEDSELVKILKNSASILKLDLGQSEAEYIVSFSRQTPRIANNLLKRV 212 Query: 220 DNLALSRGMGI 230 ++ +++ I Sbjct: 213 NDFKIAKNKEI 223 >gi|302661876|ref|XP_003022599.1| hypothetical protein TRV_03256 [Trichophyton verrucosum HKI 0517] gi|291186555|gb|EFE41981.1| hypothetical protein TRV_03256 [Trichophyton verrucosum HKI 0517] Length = 434 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 14/80 (17%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + ++L GP G+GKS LA + +++ST FS + L S + + ++ Sbjct: 164 PWKGILLYGPPGTGKSYLAKAVATEAKSTFFSVSSSDLVSKWMGESERLV---------- 213 Query: 123 DTQLFHIINSIHQYDSSLLM 142 QLF N + +++ Sbjct: 214 -KQLF---NMARENKPAIVF 229 >gi|290995721|ref|XP_002680431.1| predicted protein [Naegleria gruberi] gi|284094052|gb|EFC47687.1| predicted protein [Naegleria gruberi] Length = 668 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 61/185 (32%), Gaps = 50/185 (27%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 + + LVGPSGSGKS I L+ + + ++ +D+ + + Sbjct: 420 SGQTIALVGPSGSGKS----------------TIVGLLERFYTPNKGNITIDGVDVSELD 463 Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 L H +L +K + PD+D Sbjct: 464 PMWL-HRHCLGIVSQEPVLFAGS----------------IKYNIAYALLGPDEDM----- 501 Query: 183 VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL------ALSRGMGITRSLAA 236 +R + + + +R + F +L DK D L +LS G ++A Sbjct: 502 -----NRFTSVSMEQIESVAKRAN-AHNFIMELPDKYDTLLGEKGVSLSGGQKQRIAIAR 555 Query: 237 EVLKE 241 +L++ Sbjct: 556 ALLQD 560 >gi|308235710|ref|ZP_07666447.1| Holliday junction DNA helicase RuvB [Gardnerella vaginalis ATCC 14018] gi|311114740|ref|YP_003985961.1| crossover junction ATP-dependent DNA helicase RuvB [Gardnerella vaginalis ATCC 14019] gi|310946234|gb|ADP38938.1| crossover junction ATP-dependent DNA helicase RuvB [Gardnerella vaginalis ATCC 14019] Length = 353 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 41/219 (18%), Positives = 76/219 (34%), Gaps = 35/219 (15%) Query: 51 QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK--------SRSTRFSNIAKSLDS 102 A RL D P ++L GP G GK+ LA I +++ S + Sbjct: 62 DAARLRDVPPD----HMLLAGPPGLGKTTLAMIVANELGVSIRVTSGPAIQHAGDLASIL 117 Query: 103 ILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTF-PVSWGVCLPD---- 157 +DT + + +++I L +L +I + +M + S + LP Sbjct: 118 SSLDTGEVLFIDEIHRLPRAAEELLYI---AMEDFRVDVMVGKGPGASSIPLTLPHFTVV 174 Query: 158 ------------LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 L +R + D+ LEK+I + + + + A + R Sbjct: 175 GATTREGMLPSPLRARFGFTAHLDFYPHDE--LEKLIERSSVLLGVHLVDQAAKELAIRS 232 Query: 206 ERSLVFAEKLVDKM-DNLALSRGMGITRSLAAEVLKETQ 243 + A +L+ ++ D + + R E L Q Sbjct: 233 RGTPRIANRLLRRVRDWAVVHNLKDVNRESVIEALSLYQ 271 >gi|195326985|ref|XP_002030203.1| GM25309 [Drosophila sechellia] gi|194119146|gb|EDW41189.1| GM25309 [Drosophila sechellia] Length = 398 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + +L GP G+GK+ LA + + + ++ ++ I ++ E Sbjct: 175 PPKGCLLYGPPGTGKTLLARAIASQMDANFLKVVSSAIVDKYIGESARLIRE 226 >gi|149188544|ref|ZP_01866837.1| ATPase component of ABC transporter with duplicated ATPase domains [Vibrio shilonii AK1] gi|148837762|gb|EDL54706.1| ATPase component of ABC transporter with duplicated ATPase domains [Vibrio shilonii AK1] Length = 244 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 46/126 (36%), Gaps = 38/126 (30%) Query: 64 SRVVILVGPSGSGKSCLANI-------------WSDKSRSTRF-------SNIAKSLDSI 103 + LVG +GSGKS LA I W ++ RS F S++++S+ + Sbjct: 29 EGITALVGKNGSGKSHLAQILAKLTPPSEGRVEWGNQIRSVGFYSQLESESDLSQSIAQL 88 Query: 104 LIDTRKPVLLEDI----------DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 L K + LE I D++ ++ + Q L T P + Sbjct: 89 LGVENKLLALERIQQGDCSSHWFDMIADDE------WDLAEQLARRL--TQLRLPTDLNI 140 Query: 154 CLPDLC 159 L L Sbjct: 141 KLAQLS 146 >gi|56419319|ref|YP_146637.1| hypothetical protein GK0784 [Geobacillus kaustophilus HTA426] gi|261417821|ref|YP_003251503.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y412MC61] gi|319767369|ref|YP_004132870.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y412MC52] gi|56379161|dbj|BAD75069.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] gi|261374278|gb|ACX77021.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y412MC61] gi|317112235|gb|ADU94727.1| IstB domain protein ATP-binding protein [Geobacillus sp. Y412MC52] Length = 250 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 24/125 (19%) Query: 67 VILVGPSGSGKSCLANI----WSDKSRSTRFSNIAKSLDSILIDTRKPVL------LEDI 116 V+L+G G+GK+ LA + RF +A + + + L L+ Sbjct: 96 VLLLGSPGTGKTHLATALGIQACQQGHEVRFFRVADLVAQLEEALKNGTLGRLKRSLDPC 155 Query: 117 DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 +LL ++ LFHII ++ S+++T+ W D +RL AA Sbjct: 156 ELLILDELGYVPFQKQGSELLFHIIADCYER-KSVMVTSNLEFGQWNRVFGD--NRLTAA 212 Query: 166 TVVKI 170 V ++ Sbjct: 213 LVDRL 217 >gi|13541778|ref|NP_111466.1| ATPase of the AAA+ class involved in cell division [Thermoplasma volcanium GSS1] gi|14325192|dbj|BAB60117.1| cell cycle control protein 48 [Thermoplasma volcanium GSS1] Length = 745 Score = 40.5 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 18/32 (56%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 PS+ +L GP G GK+ LA + +S + S Sbjct: 500 PSKGFLLYGPPGVGKTLLAKAVATESNANFIS 531 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 20/32 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + VIL GP G+GK+ +A +++S + S Sbjct: 223 PPKGVILYGPPGTGKTLIARAVANESGANFLS 254 >gi|281344564|gb|EFB20148.1| hypothetical protein PANDA_019466 [Ailuropoda melanoleuca] Length = 389 Score = 40.5 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + ++ S+ I ++ E Sbjct: 166 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESACLIRE-------- 217 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 218 ------MFNYARDHQ 226 >gi|271500827|ref|YP_003333852.1| AAA ATPase central domain-containing protein [Dickeya dadantii Ech586] gi|270344382|gb|ACZ77147.1| AAA ATPase central domain protein [Dickeya dadantii Ech586] Length = 447 Score = 40.5 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 41/199 (20%), Positives = 69/199 (34%), Gaps = 38/199 (19%) Query: 67 VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G+GK+ LA + ++ R S + + I + + T Sbjct: 53 MILWGPPGTGKTTLAELIGHYGQADVERISAVTSGIKEIREAIERA----RQNRDAGRRT 108 Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N Q D ++ T L SR A V + Sbjct: 109 ILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSA---LLSR---ARVYLL 162 Query: 171 SLPDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRM----ERSLVFAEKLVDKM 219 D +E+V+++ D+ QI + + + + + RSL E + D Sbjct: 163 KALSVDDIEQVLLQALQDKERGLGEQQIVLPDETRRLLAELVNGDARRSLNLLEMMADMA 222 Query: 220 DNLALSRGMGITRSLAAEV 238 + A + +T L EV Sbjct: 223 EVDA-TGRRLLTLELLKEV 240 >gi|313125585|ref|YP_004035849.1| ATPase AAA [Halogeometricum borinquense DSM 11551] gi|312291950|gb|ADQ66410.1| AAA family ATPase, CDC48 subfamily [Halogeometricum borinquense DSM 11551] Length = 741 Score = 40.5 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 23/163 (14%), Positives = 62/163 (38%), Gaps = 33/163 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P + V+L GP G+GK+ LA ++++ ++ FS + + + Sbjct: 222 PPQGVLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDAKEE 281 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + ++++D + QL +++ + +++ A S Sbjct: 282 SPSIIFIDELDSIAPKREDVTGEVERRVVAQLLTMMDGLETRGQVIVIAATNRVDS---V 338 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L + ++I +PD+ ++++ R + + + Sbjct: 339 DPALRRPGRFDREIEIGVPDESGRKEILQ--IHTRGMPLSDDV 379 Score = 37.1 bits (85), Expect = 2.3, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 20/32 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + V+L GP G+GK+ +A ++++ + S Sbjct: 495 PPKGVLLYGPPGTGKTLIAKAVANETNANFIS 526 >gi|212224536|ref|YP_002307772.1| proteasome-activating nucleotidase [Thermococcus onnurineus NA1] gi|226723242|sp|B6YXR2|PAN_THEON RecName: Full=Proteasome-activating nucleotidase; Short=PAN; AltName: Full=Proteasomal ATPase; AltName: Full=Proteasome regulatory ATPase; AltName: Full=Proteasome regulatory particle gi|212009493|gb|ACJ16875.1| proteasome-activating nucleotidase [Thermococcus onnurineus NA1] Length = 398 Score = 40.5 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 23/52 (44%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G GK+ +A + + +T + L I ++ E Sbjct: 172 PPKGVLLYGPPGCGKTLMAKALAHEVNATFIRVVGSELVRKFIGEGARLVHE 223 >gi|195589664|ref|XP_002084570.1| GD14340 [Drosophila simulans] gi|194196579|gb|EDX10155.1| GD14340 [Drosophila simulans] Length = 398 Score = 40.5 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + +L GP G+GK+ LA + + + ++ ++ I ++ E Sbjct: 175 PPKGCLLYGPPGTGKTLLARAIASQMDANFLKVVSSAIVDKYIGESARLIRE 226 >gi|24663015|ref|NP_648525.1| Rpt4R [Drosophila melanogaster] gi|7294649|gb|AAF49987.1| Rpt4R [Drosophila melanogaster] gi|19527781|gb|AAL90005.1| AT06668p [Drosophila melanogaster] gi|220960210|gb|ACL92641.1| CG7257-PA [synthetic construct] Length = 398 Score = 40.5 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + +L GP G+GK+ LA + + + ++ ++ I ++ E Sbjct: 175 PPKGCLLYGPPGTGKTLLARAIASQMDANFLKVVSSAIVDKYIGESARLIRE 226 >gi|303241541|ref|ZP_07328042.1| AAA ATPase central domain protein [Acetivibrio cellulolyticus CD2] gi|302590959|gb|EFL60706.1| AAA ATPase central domain protein [Acetivibrio cellulolyticus CD2] Length = 430 Score = 40.5 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 20/108 (18%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS-----TR 92 ++D +V S + R+I + VIL GP G+GK+ LA I ++ +++ Sbjct: 21 FGQED-IVGSG-KLLYRMIKADR---ITSVILYGPPGTGKTSLARIIANTTKANFEKLNA 75 Query: 93 FSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLF----HIINSIHQY 136 + + I+ DTR +L T LF H N Q Sbjct: 76 VTAGVSDIKRIVADTRNQIL------NPSQKTVLFVDEIHRFNKAQQD 117 >gi|296394109|ref|YP_003658993.1| ATPase AAA [Segniliparus rotundus DSM 44985] gi|296181256|gb|ADG98162.1| AAA ATPase central domain protein [Segniliparus rotundus DSM 44985] Length = 479 Score = 40.5 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 53/136 (38%), Gaps = 22/136 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLD-------------SILIDTRKPVLL 113 V+L GP G+GK+ +A++ S + + A + + R + + Sbjct: 78 VVLHGPPGTGKTTIASLLSAATGREFVALSALTAGVKEVREVIEDSRMRLAAGRRTVLFI 137 Query: 114 EDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +++ L + ++ LL+ A T + V P L SR + V+++ Sbjct: 138 DEVHRFSKTQQDALL----AAVEHQIVLLVAATTENPGFAVVSP-LLSR---SLVLELRP 189 Query: 173 PDDDFLEKVIVKMFAD 188 + L+ +I + D Sbjct: 190 LAREDLDALISRALED 205 >gi|225678278|gb|EEH16562.1| cdcH [Paracoccidioides brasiliensis Pb03] Length = 801 Score = 40.5 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 23/46 (50%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 V+L GP G GK+ LA +++SR+ S L + + + + Sbjct: 575 VLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKFVGESERAV 620 Score = 38.2 bits (88), Expect = 1.2, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 27/57 (47%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P R V+L GP G GK+ +AN ++ + + A S+ S + + L E + Sbjct: 261 PPRGVLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIVSGMSGESEKALREHFEEA 317 >gi|145361024|ref|NP_182074.4| ATP binding / nucleoside-triphosphatase/ nucleotide binding [Arabidopsis thaliana] gi|330255468|gb|AEC10562.1| AAA-type ATPase-like protein [Arabidopsis thaliana] Length = 491 Score = 40.5 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 31/50 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S++T F+ A SL S + + ++ Sbjct: 252 PARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWVGEAEKLV 301 >gi|221068782|ref|ZP_03544887.1| AAA ATPase central domain protein [Comamonas testosteroni KF-1] gi|220713805|gb|EED69173.1| AAA ATPase central domain protein [Comamonas testosteroni KF-1] Length = 446 Score = 40.5 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 69/175 (39%), Gaps = 26/175 (14%) Query: 68 ILVGPSGSGKSCLANIWSDKSRSTRFS---------------NIAKSLDSILIDTRKPVL 112 IL GP G GK+ +A + +D + S A++ S L+ R V Sbjct: 55 ILWGPPGVGKTTIARLMADAFDAQFISISAVLGGVKDIREAVEQAQAARSGLLQQRTIVF 114 Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 ++++ + + F + + A T S+ V L SR A V + Sbjct: 115 VDEVHRFNKSQQDAFLPH---VESGLFTFIGATTENPSFEVNSA-LLSR---AAVYVLQS 167 Query: 173 PDDDFLEKVIVKMFADRQI-FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 D L++++ K + + I+ + ++ + A +L++ ++ L+++ Sbjct: 168 LTTDDLKQIVAKAQVIKAVPTIEDEALDRLIAYAD---GDARRLLNTLETLSITA 219 >gi|15895552|ref|NP_348901.1| Holliday junction DNA helicase RuvB [Clostridium acetobutylicum ATCC 824] gi|20140171|sp|Q97GT1|RUVB_CLOAB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|15025289|gb|AAK80241.1|AE007729_8 Holliday junction specific DNA helicase, subunit ruvB [Clostridium acetobutylicum ATCC 824] gi|325509701|gb|ADZ21337.1| Holliday junction DNA helicase B [Clostridium acetobutylicum EA 2018] Length = 349 Score = 40.5 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 41/206 (19%), Positives = 78/206 (37%), Gaps = 31/206 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+ GP G GK+ LANI + + +++ L + D+L ++ Sbjct: 55 VLFYGPPGLGKTTLANIIAKEMGGNLKVTSGPAIERAGDLAAILTGLSEYDVLFIDEI-- 112 Query: 127 FHIINSIHQ-------YDSSL-LMTAR-TFPVSWGVCLPD----------------LCSR 161 H +N + D +L ++ + S + LP L R Sbjct: 113 -HRLNRSVEEILYPAMEDYALDIIIGKGAAAKSIRLDLPKFTLIGATTRVGLLTAPLRDR 171 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 + + +D+ L+++IV+ + I ID+ A I R + A +L+ ++ + Sbjct: 172 F--GVLCPMEFYNDEELKEIIVRSSSILDIDIDEDAALEIAMRSRGTPRIANRLLKRVRD 229 Query: 222 LALSRGMGI-TRSLAAEVLKETQQCD 246 A +G GI A + L + D Sbjct: 230 YADVKGRGIVNLDSAKKALNLLEVDD 255 >gi|159116983|ref|XP_001708712.1| P60 katanin [Giardia lamblia ATCC 50803] gi|157436825|gb|EDO81038.1| P60 katanin [Giardia lamblia ATCC 50803] Length = 501 Score = 40.5 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 39/188 (20%), Positives = 75/188 (39%), Gaps = 52/188 (27%) Query: 62 WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS----------------ILI 105 WP+ ++L GP+G+GK+ +A+ + ++ F+ + S Sbjct: 245 WPTTGLLLYGPAGTGKTLIASSVATQAGYNFFNVAISDIVSKWKGEAVLCVRALYTIARA 304 Query: 106 DTRKPVLLEDIDLL------DFNDTQL------------F-HIINSIHQYD-----SSLL 141 V +++ID L ++T + F H I+ + D SL+ Sbjct: 305 CAPSVVFIDEIDALVCGDSRTTDETSVQIRTELQTQLDGFQHKISDSIEGDLSFNPESLV 364 Query: 142 MT--ARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA-DRQIFIDKKL- 197 +T A FP W + P L + V I LPD+ +++++ DRQ D + Sbjct: 365 ITIGATNFP--WKLDGPILR---RFTNRVYIGLPDEATVKELLTMCVDFDRQ---DPDVT 416 Query: 198 AAYIVQRM 205 +++ R+ Sbjct: 417 IDWLIPRL 424 >gi|332374594|gb|AEE62438.1| unknown [Dendroctonus ponderosae] Length = 392 Score = 40.5 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + + ++ ++ I ++ E Sbjct: 169 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 220 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 221 ------MFNYAKDHQ 229 >gi|330955484|gb|EGH55744.1| recombination factor protein RarA [Pseudomonas syringae Cit 7] Length = 207 Score = 40.5 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 51/160 (31%), Gaps = 27/160 (16%) Query: 57 DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 ++ +I GP G GK+ LA + + S + + A I V + Sbjct: 40 EALEQGALHSMIFWGPPGVGKTTLAKLLAKVSDAHFETVSAVLAGVKEIRQAVEVARQQA 99 Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162 T LF H N Q D +L+ T L SR Sbjct: 100 GQYGKR-TILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154 Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKK 196 A V + D+ L K++ + + RQ+ + + Sbjct: 155 --ARVYVLKSLDEAALRKLVNRALTEERGLGKRQLTLSDE 192 >gi|296109578|ref|YP_003616527.1| AAA ATPase central domain protein [Methanocaldococcus infernus ME] gi|295434392|gb|ADG13563.1| AAA ATPase central domain protein [Methanocaldococcus infernus ME] Length = 369 Score = 40.5 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 21/152 (13%), Positives = 52/152 (34%), Gaps = 34/152 (22%) Query: 61 SWPSRVVILVGPSGSGKSCLANIWSDKSR------------STRFSNIAKSLDSILIDTR 108 W + V+ GP G+GK+ +A + ++ + AK + + Sbjct: 149 EWAPKNVLFYGPPGTGKTMMARALATETDSSFIMVKAPELIGEHVGDSAKMIRELYKKAS 208 Query: 109 KP----VLLEDIDLLDFNDT-------------QLFHIINSIHQYDSSLLMTARTFPVSW 151 + + ++++D + + L ++ I + + + A P Sbjct: 209 ESAPCIIFIDELDAIGLSREYQSLRGDVAEVVNALLTELDGIKENKGVVTIAATNNPAML 268 Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIV 183 + SR + K+ P+D+ K++ Sbjct: 269 DSAI---RSRFEEEIEFKL--PNDEERLKIME 295 >gi|254497210|ref|ZP_05110020.1| putative transposase subunit 2 [Legionella drancourtii LLAP12] gi|254353557|gb|EET12282.1| putative transposase subunit 2 [Legionella drancourtii LLAP12] Length = 251 Score = 40.5 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 24/119 (20%) Query: 62 WPSRV--VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL--------------- 104 W SR V++ GP+G+GK+ LA +++++ FS L + Sbjct: 95 WISRKQNVLITGPTGTGKTWLACAFANQACREGFSTRYLRLPRLFQALEVAKGDGSYIKL 154 Query: 105 ---IDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 + + ++L+D L N++Q L I++ SS L+T++ W + D Sbjct: 155 LASLAKTQLIILDDWGLAPMNESQRRDLLEIMDD-RHNQSSTLVTSQLPVNLWHDSIGD 212 >gi|195493667|ref|XP_002094514.1| GE21865 [Drosophila yakuba] gi|194180615|gb|EDW94226.1| GE21865 [Drosophila yakuba] Length = 398 Score = 40.5 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + +L GP G+GK+ LA + + + ++ ++ I ++ E Sbjct: 175 PPKGCLLYGPPGTGKTLLARAIASQMDANFLKVVSSAIVDKYIGESARLIRE 226 >gi|145331409|ref|NP_001078063.1| ATP binding / nucleoside-triphosphatase/ nucleotide binding [Arabidopsis thaliana] gi|110739496|dbj|BAF01657.1| hypothetical protein [Arabidopsis thaliana] gi|330255469|gb|AEC10563.1| AAA-type ATPase-like protein [Arabidopsis thaliana] Length = 487 Score = 40.5 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 31/50 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S++T F+ A SL S + + ++ Sbjct: 248 PARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWVGEAEKLV 297 >gi|78047616|ref|YP_363791.1| recombination factor protein RarA [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036046|emb|CAJ23737.1| putative ATPase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 457 Score = 40.5 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 37/200 (18%), Positives = 65/200 (32%), Gaps = 31/200 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA + + + + F I+ L + + VL E + Sbjct: 62 MILWGPPGCGKTTLALLLAHYADAE-FKAISAVLSG--LPEVRQVLAEAAQRFAGGRRTV 118 Query: 127 F-----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKIS 171 H N Q ++L T L SR + + +S Sbjct: 119 LFVDEVHRFNKAQQDAFLPHIERGTILFVGATTENPSFELNSA---LLSRCRVHVLEGVS 175 Query: 172 LPD--DDFLEKVIVKMFADRQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 D + + A+R + + + I + + A L++ LA Sbjct: 176 PQDIVEALQRAL---RDAERGLGAETIQVSEASLLEIASAADGDVRRALTLLEIAAELAA 232 Query: 225 SRGMGITRSLAAEVLKETQQ 244 G IT +VL + + Sbjct: 233 GEGGEITPQTLLQVLADRTR 252 >gi|269216091|ref|ZP_06159945.1| replication-associated recombination protein A [Slackia exigua ATCC 700122] gi|269130350|gb|EEZ61428.1| replication-associated recombination protein A [Slackia exigua ATCC 700122] Length = 443 Score = 40.5 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 66/183 (36%), Gaps = 28/183 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKP------------VL 112 VIL GP+G+GK+ +A I ++ +RS S I ++ + + + Sbjct: 56 VILFGPAGTGKTSIARIIAETTRSAFVEVSAIGGTVADLRREISAAERRLASAGTKTILF 115 Query: 113 LEDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++I L H + +L+ A T + V L SR + +V++ Sbjct: 116 VDEIHRFSRSQQDALLH----AVENRVVILVGATTENPFFEVNSA-LISR---SRIVELH 167 Query: 172 LPDDDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 D + ++ AD R + A IV A ++ LA S Sbjct: 168 ALSDADIASILDAALADERGLRGRFAFADGAARAIVDLSGGDARGALTTLELASQLAESE 227 Query: 227 GMG 229 G Sbjct: 228 GRK 230 >gi|242211508|ref|XP_002471592.1| predicted protein [Postia placenta Mad-698-R] gi|220729364|gb|EED83240.1| predicted protein [Postia placenta Mad-698-R] Length = 380 Score = 40.5 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 48/142 (33%), Gaps = 18/142 (12%) Query: 61 SWPSRVVILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDL 118 S + +I GP G GK+ LA + + ++ + S + + + + + Sbjct: 38 SGATGSMIFWGPPGCGKTTLARLLAKRTDAIFKELSATDSGISDVRAVVEEAKGVLALTG 97 Query: 119 LDFNDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 T LF H N + L+ A T S+ + L SR Sbjct: 98 RQAVRTILFLDEVHRFNKAQQDIFLPFLEQGHLQLIGATTENPSFKLTGA-LISR---CR 153 Query: 167 VVKISLPDDDFLEKVIVKMFAD 188 V + DD + K++ + Sbjct: 154 VFVLERLTDDDITKIVTQAVER 175 >gi|172036958|ref|YP_001803459.1| cell division protein [Cyanothece sp. ATCC 51142] gi|171698412|gb|ACB51393.1| cell division protein [Cyanothece sp. ATCC 51142] Length = 660 Score = 40.5 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 36/220 (16%), Positives = 71/220 (32%), Gaps = 58/220 (26%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ T FS A + + T Sbjct: 244 VLLVGPPGTGKTLLAKAVAGEAGVTFFSISASEFVELFVGTGAARVRDLFEQAKKQAPCI 303 Query: 111 VLLEDIDLLDFN--------------DTQLFHIIN----SIHQYDSSLLMTARTFPVSWG 152 + ++++D + + + L ++ + +++ A P + Sbjct: 304 IFIDELDAIGKSRSGGNGISGSNDEREQTLNQLLTEMDGFAVGDATVIVLAATNRPETLD 363 Query: 153 VCL--------------PDLCSRLK----AATVVKISLPDDDFLEKVIVKMFADRQIFID 194 L PDL RL A V+I D L+ + + Sbjct: 364 PALLRPGRFDRQVLVDRPDLAGRLAILEIYAQRVEIDP--DVNLKDIATHTPGFAGADLA 421 Query: 195 KKL--AAYIVQRMERSLVFAEKLVDKMDN--LALSRGMGI 230 + AA + R +R V + ++ L + + Sbjct: 422 NLVNEAALLAARNQREYVTQADFKEAIERVVAGLEKKSRV 461 >gi|226193735|ref|ZP_03789337.1| ATPase, AAA family [Burkholderia pseudomallei Pakistan 9] gi|254298872|ref|ZP_04966322.1| ATPase, AAA family [Burkholderia pseudomallei 406e] gi|157809189|gb|EDO86359.1| ATPase, AAA family [Burkholderia pseudomallei 406e] gi|225934040|gb|EEH30025.1| ATPase, AAA family [Burkholderia pseudomallei Pakistan 9] Length = 485 Score = 40.5 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 61/173 (35%), Gaps = 28/173 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA + + + A I + ++ + T L Sbjct: 99 MILWGPPGVGKTTLARLTALAFDCEFIALSAVLGGVKDIREAMEQARDTLNRTGRH-TIL 157 Query: 127 F----HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 F H N Q +LL + A T S+ V L SR A V + Sbjct: 158 FVDEIHRFNKAQQD--ALLPFVESGLVTFIGATTENPSFEVNSA-LLSR---AQVYVLKS 211 Query: 173 PDDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 +D L +++ K D + D K +V + A + ++ ++ Sbjct: 212 LAEDELRQLL-KRAQDVALGGLAFDDKAVDTLVGYAD---GDARRFLNLLEQA 260 >gi|323140860|ref|ZP_08075773.1| cell division protease FtsH [Phascolarctobacterium sp. YIT 12067] gi|322414598|gb|EFY05404.1| cell division protease FtsH [Phascolarctobacterium sp. YIT 12067] Length = 617 Score = 40.5 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 45/140 (32%), Gaps = 45/140 (32%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 +LVGP G+GK+ LA + +++ FS + + Sbjct: 200 ALLVGPPGTGKTLLARAVAGEAKVPFFSISGSEFVEMFVGMGAARVRDLFKQAQEKAPCI 259 Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW---- 151 V +++ID + ND QL ++ +++ A P S Sbjct: 260 VFIDEIDAIGKRRDNGQFGGNDEREQTLNQLLSEMDGFDGSKGVVILAATNRPESLDKAL 319 Query: 152 ----------GVCLPDLCSR 161 V LPDL R Sbjct: 320 LRPGRFDRRIPVELPDLKGR 339 >gi|294648646|ref|ZP_06726108.1| recombination factor protein RarA [Acinetobacter haemolyticus ATCC 19194] gi|292825436|gb|EFF84177.1| recombination factor protein RarA [Acinetobacter haemolyticus ATCC 19194] Length = 426 Score = 40.5 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 34/192 (17%), Positives = 71/192 (36%), Gaps = 34/192 (17%) Query: 49 IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAK-----SLDSI 103 ++ID +I GP G GK+ +A + + S A L + Sbjct: 31 NAPLRQMIDQ---GHLPSIIFWGPPGVGKTTIALLLAQAVDRPFISLSALNTGVKELREV 87 Query: 104 LIDTRKP----VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC 159 + ++ V +++I + + ++N++ + L+ A T S+ V L Sbjct: 88 IAESGDLLTPVVFIDEIHRFNKSQQD--ALLNAV-EKGKITLIGATTENPSFEVNSA-LL 143 Query: 160 SRLKAATVVKISLPDDDFLEKVI------VKMFADRQIFID--KKLAAYIVQRMERSLVF 211 SR V ++ D + ++ ++ K +R I I+ L + Sbjct: 144 SR---CQVYTLNSLDAEAIQTLLNKAIQTDKFLKERFIQIEEYDALIQFAA-------GD 193 Query: 212 AEKLVDKMDNLA 223 A K ++ +D +A Sbjct: 194 ARKALNLIDLIA 205 >gi|228989273|ref|ZP_04149266.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus pseudomycoides DSM 12442] gi|228995456|ref|ZP_04155126.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus mycoides Rock3-17] gi|228764317|gb|EEM13194.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus mycoides Rock3-17] gi|228770483|gb|EEM19054.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus pseudomycoides DSM 12442] Length = 616 Score = 40.5 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 62/197 (31%), Gaps = 45/197 (22%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ FS + + Sbjct: 181 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 240 Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + + L + ++ + +++ A P L Sbjct: 241 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANEGIIIIAATNRPDILDPAL 300 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211 L+ + + PD + E V+ R +D + I R Sbjct: 301 ------LRPGRFDRQITVDRPDVNGREAVLKVHA--RNKPLDDDINLRAIATRTP-GFSG 351 Query: 212 AEKLVDKMDNLALSRGM 228 A L + ++ AL Sbjct: 352 A-DLENLLNEAALVAAR 367 >gi|224023566|ref|ZP_03641932.1| hypothetical protein BACCOPRO_00269 [Bacteroides coprophilus DSM 18228] gi|224016788|gb|EEF74800.1| hypothetical protein BACCOPRO_00269 [Bacteroides coprophilus DSM 18228] Length = 341 Score = 40.5 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 37/202 (18%), Positives = 68/202 (33%), Gaps = 31/202 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G GK+ L+NI +++ LD LE D+L ++ Sbjct: 58 VLLHGPPGLGKTTLSNIIANELGVGFKVTSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHR 117 Query: 127 F------HIINSIHQYDSSLLMTARTFPVSWGVCLPDL----------CS-------RLK 163 ++ +++ Y +++ P + + L DL S R + Sbjct: 118 LSPVVEEYLYSAMEDYRIDIMI--DKGPSARSIQL-DLNPFTLVGATTRSGLLTAPLRAR 174 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR---MERSLVFAEKLVDKMD 220 + + DD L ++I++ + D A I R R + V D Sbjct: 175 FGINLHLEYYDDTILSRIILRSAGILGVPCDVDAAGEIASRSRGTPRIANALLRRVR--D 232 Query: 221 NLALSRGMGITRSLAAEVLKET 242 + I +A L+ Sbjct: 233 FAQVKGSGRIDVEIARYALEAL 254 >gi|224010519|ref|XP_002294217.1| nuclear vcp-like-like protein [Thalassiosira pseudonana CCMP1335] gi|220970234|gb|EED88572.1| nuclear vcp-like-like protein [Thalassiosira pseudonana CCMP1335] Length = 605 Score = 40.5 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 19/38 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P R V+L GP G GK+ LA + + + F A L Sbjct: 33 PPRGVLLRGPPGCGKTHLAKAIAGELNVSYFQVSAPEL 70 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 20/43 (46%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109 V+L GP G GK+ LA +++S + S L + + Sbjct: 359 VLLYGPPGCGKTLLAKAIANESGANFISVKGPELLDKYVGESE 401 >gi|212537065|ref|XP_002148688.1| sister chromatid cohesion factor (Chl12), putative [Penicillium marneffei ATCC 18224] gi|210068430|gb|EEA22521.1| sister chromatid cohesion factor (Chl12), putative [Penicillium marneffei ATCC 18224] Length = 1133 Score = 40.5 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 9/27 (33%), Positives = 19/27 (70%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSR 89 P ++++L GP G GK+ LA++ + ++ Sbjct: 445 PRKILMLTGPPGLGKTTLAHVCAQQAG 471 >gi|196250112|ref|ZP_03148806.1| Holliday junction DNA helicase RuvB [Geobacillus sp. G11MC16] gi|196210296|gb|EDY05061.1| Holliday junction DNA helicase RuvB [Geobacillus sp. G11MC16] Length = 333 Score = 40.5 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 46/210 (21%), Positives = 77/210 (36%), Gaps = 45/210 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G GK+ LA I +++ + +L+ LE D+L ++ Sbjct: 56 VLLYGPPGLGKTTLAAIIANEMGVKMRATSGPALERPGDLAALLTSLEPGDVLFIDEI-- 113 Query: 127 FHIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDL--------------------- 158 H + + D L +T P + + L DL Sbjct: 114 -HRLPRTVEEVLYPAMEDYCLDITVGKGPEARSLRL-DLPPFTLVGATTRAGALSAPLRD 171 Query: 159 ----CSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 SRL+ V D L ++I + A I I+ + A + +R + A + Sbjct: 172 RFGVISRLEYYQV--------DQLAQIIERAAAILHIIINNEAALELARRARGTPRIANR 223 Query: 215 LVDKM-DNLALSRGMGITRSLAAEVLKETQ 243 L+ ++ D +S IT LA E L+ Q Sbjct: 224 LLRRVRDFAQVSGDGEITLPLAVEALERLQ 253 >gi|186510248|ref|NP_188608.3| ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding [Arabidopsis thaliana] Length = 1001 Score = 40.5 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 49/144 (34%), Gaps = 43/144 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------ILIDTR 108 P + ++L GP G+GK+ LA + ++ + S +L S Sbjct: 746 PCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKL 805 Query: 109 KPVLL--EDIDLLDFNDTQLF-H-----IIN---------SIHQYDSSLLMTA------- 144 PV++ +++D L F H + N L++ A Sbjct: 806 APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDGLRSKDSQRILILGATNRPFDL 865 Query: 145 -----RTFPVSWGVCLPDLCSRLK 163 R P V LPD +RLK Sbjct: 866 DDAVIRRLPRRIYVDLPDAENRLK 889 >gi|332642761|gb|AEE76282.1| P-loop containing nucleoside triphosphate hydrolase domain-containing protein [Arabidopsis thaliana] Length = 993 Score = 40.5 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 49/144 (34%), Gaps = 43/144 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------ILIDTR 108 P + ++L GP G+GK+ LA + ++ + S +L S Sbjct: 738 PCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKL 797 Query: 109 KPVLL--EDIDLLDFNDTQLF-H-----IIN---------SIHQYDSSLLMTA------- 144 PV++ +++D L F H + N L++ A Sbjct: 798 APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDGLRSKDSQRILILGATNRPFDL 857 Query: 145 -----RTFPVSWGVCLPDLCSRLK 163 R P V LPD +RLK Sbjct: 858 DDAVIRRLPRRIYVDLPDAENRLK 881 >gi|325968458|ref|YP_004244650.1| ATPase AAA [Vulcanisaeta moutnovskia 768-28] gi|323707661|gb|ADY01148.1| AAA family ATPase, CDC48 subfamily [Vulcanisaeta moutnovskia 768-28] Length = 737 Score = 40.5 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 17/114 (14%), Positives = 42/114 (36%), Gaps = 28/114 (24%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110 P + V+L+GP G+GK+ LA + ++ + + + S + Sbjct: 218 PPKGVLLIGPPGTGKTLLAKAVATETNAYFIAINGPEIVSKYYGESEAKLREIFEEAKKN 277 Query: 111 ----VLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP 148 + +++ID + QL +++ + + +++ A P Sbjct: 278 APAIIFIDEIDAIAPKREEVTGEVEKRIVAQLLTLMDGLQERGQVIVIGATNRP 331 Score = 38.6 bits (89), Expect = 0.79, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 19/32 (59%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + ++L GP G+GK+ LA + +S + + Sbjct: 494 PPKGILLFGPPGTGKTLLAKAVATESNANFIA 525 >gi|323144222|ref|ZP_08078854.1| replication-associated recombination protein A [Succinatimonas hippei YIT 12066] gi|322415997|gb|EFY06699.1| replication-associated recombination protein A [Succinatimonas hippei YIT 12066] Length = 475 Score = 40.5 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 30/194 (15%), Positives = 67/194 (34%), Gaps = 29/194 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST-------------RFSNIAKSLDSILIDTRKPVLL 113 +I GP G GK+ LA I + S + + I +++ R + + Sbjct: 70 MIFWGPPGVGKTTLALIIAKSSGAVLEQISAVTSGVKDIRAAIDRAMSRKRQGVRTVLFV 129 Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 +++ + + F + + + + A T S+ + L SR A V + Sbjct: 130 DEVHRFNKSQQDAFLPY---IENGTIIFIGATTENPSFELNSA-LLSR---ARVYVLKKL 182 Query: 174 DDDFLEKVI------VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 + L+ ++ K + + K+ ++ E ++ + +LA Sbjct: 183 SPEELKALLHHALESEKGLKSENLVLADKVEDALIDLSEGDGRHLLNTLEMLVDLAAPYK 242 Query: 228 ---MGITRSLAAEV 238 IT ++ V Sbjct: 243 DGSKIITFAMVGAV 256 >gi|313906218|ref|ZP_07839564.1| ATP-dependent metalloprotease FtsH [Eubacterium cellulosolvens 6] gi|313468948|gb|EFR64304.1| ATP-dependent metalloprotease FtsH [Eubacterium cellulosolvens 6] Length = 622 Score = 40.5 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 36/207 (17%), Positives = 63/207 (30%), Gaps = 65/207 (31%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 +LVGP G+GK+ LA + ++ FS + + Sbjct: 193 ALLVGPPGTGKTLLAKAVAGEANVPFFSISGSEFVEMFVGMGAAKVRDLFKQANEKAPCI 252 Query: 111 VLLEDIDLLD---------FNDT------QLFHIINSIHQYDSSLLMTARTFPVSW---- 151 V +++ID + ND QL ++ +++ A P S Sbjct: 253 VFIDEIDTIGKKRDGGGFSGNDEREQTLNQLLAEMDGFDGKKGVVILAATNRPDSLDPAL 312 Query: 152 ----------GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 V LPDL R E+++ ++I I + Sbjct: 313 TRPGRFDRRIPVELPDLQGR-----------------EQILRLHA--KKIRISDNVDFNA 353 Query: 202 VQRMERSLVFAEKLVDKMDNLALSRGM 228 V R S +L + ++ AL Sbjct: 354 VARTA-SGASGAELANMINEAALRAVR 379 >gi|302404251|ref|XP_002999963.1| SAP1 [Verticillium albo-atrum VaMs.102] gi|261361145|gb|EEY23573.1| SAP1 [Verticillium albo-atrum VaMs.102] Length = 783 Score = 40.5 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 31/50 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +SRST FS A SL S + + ++ Sbjct: 527 PARGMLLFGPPGTGKTMLARAVATESRSTFFSISASSLTSKYLGESEKLV 576 >gi|242095208|ref|XP_002438094.1| hypothetical protein SORBIDRAFT_10g007950 [Sorghum bicolor] gi|241916317|gb|EER89461.1| hypothetical protein SORBIDRAFT_10g007950 [Sorghum bicolor] Length = 319 Score = 40.5 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 50/144 (34%), Gaps = 43/144 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------ILIDTR 108 P + ++L GP G+GK+ LA + ++ + S +L S Sbjct: 62 PCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKSLFSFASRL 121 Query: 109 KPVLL--EDIDLLDFNDTQLF-H-----IIN---------SIHQYDSSLLMTA------- 144 PV++ +++D L F H + N + L++ A Sbjct: 122 APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDGLRSKENQRILVLGATNRPFDL 181 Query: 145 -----RTFPVSWGVCLPDLCSRLK 163 R P V LPD +R+K Sbjct: 182 DDAVIRRLPRRILVDLPDAQNRMK 205 >gi|237724750|ref|ZP_04555231.1| TnpB [Bacteroides sp. D4] gi|229436945|gb|EEO47022.1| TnpB [Bacteroides dorei 5_1_36/D4] Length = 236 Score = 40.5 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 22/112 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDTR 108 +IL+GPSG+GK+ LA + + +++ I+ I Sbjct: 103 LILIGPSGTGKTFLAAGLVFDAVKAGYKAYLMTMEDIVNSLRLKDISTPAMMTYNKILRA 162 Query: 109 KPVLLEDIDLLDF---NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 + + + DI L T F++IN++H+ +S+++T P L D Sbjct: 163 QLLAINDIMLFPVKRKEATAFFNLINTLHE-KTSIIITTNKAPTECVETLND 213 >gi|258651044|ref|YP_003200200.1| ABC transporter [Nakamurella multipartita DSM 44233] gi|258554269|gb|ACV77211.1| ABC transporter related [Nakamurella multipartita DSM 44233] Length = 266 Score = 40.5 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 5/72 (6%) Query: 62 WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 WP + ++GPSGSGKS L + + ++ S + + ++ + D + F Sbjct: 50 WPGQFTAIMGPSGSGKSTLMHCLAALDSASSGSVFVGDAELTRLGDKELTRIRR-DRIGF 108 Query: 122 NDTQLFHIINSI 133 +F N + Sbjct: 109 ----VFQAFNLV 116 >gi|289581037|ref|YP_003479503.1| 26S proteasome subunit P45 family [Natrialba magadii ATCC 43099] gi|289530590|gb|ADD04941.1| 26S proteasome subunit P45 family [Natrialba magadii ATCC 43099] Length = 410 Score = 40.5 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 28/64 (43%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P V+L GP G+GK+ LA ++++ +T L I ++ + +L Sbjct: 185 PPSGVLLHGPPGTGKTMLAKAVANQTDATFIKMAGSELVRKFIGEGSRLVRDLFELARER 244 Query: 123 DTQL 126 + + Sbjct: 245 EPAI 248 >gi|237807856|ref|YP_002892296.1| ATP-dependent protease ATP-binding subunit ClpX [Tolumonas auensis DSM 9187] gi|259491271|sp|C4LDB4|CLPX_TOLAT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|237500117|gb|ACQ92710.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Tolumonas auensis DSM 9187] Length = 426 Score = 40.5 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 20/104 (19%) Query: 30 FSFPRCLGISRDDLLVHSAIE------QAVRLIDSWPSWPS--------RVVILVGPSGS 75 P + DD ++ + S S ++L+GP+GS Sbjct: 66 LPTPHKIRAHLDDYVIGQDLAKKVLAVAVYNHYKRLRSGSSADGVELGKSNILLIGPTGS 125 Query: 76 GKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 GK+ LA + R ++ ++ T + ED++ + Sbjct: 126 GKTLLAETLA------RLLDVPFTMADATTLTEAGYVGEDVENI 163 >gi|207722841|ref|YP_002253276.1| transposition helper protein (partial sequence c terminus) [Ralstonia solanacearum MolK2] gi|206588025|emb|CAQ18606.1| putative transposition helper protein (partial sequence c terminus) [Ralstonia solanacearum MolK2] Length = 330 Score = 40.5 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 47/130 (36%), Gaps = 30/130 (23%) Query: 51 QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110 ++ I+ + V+L+GPSG GK+ +A+ + ++ + +++ Sbjct: 161 ASLAFIERAEN-----VVLLGPSGVGKTHIASALAYRATQAGIKTRFITAADLMMQLATA 215 Query: 111 -------------------VLLEDIDLLDF--NDTQLFHIINSI--HQYDSSLLMTARTF 147 +++++I L F + LF N + ++++T+ Sbjct: 216 RQQNRLREFFNRAVIGPRLLVIDEIGYLPFGREEADLF--FNVVAKRYERGAIVLTSNLP 273 Query: 148 PVSWGVCLPD 157 W D Sbjct: 274 FTQWATAFAD 283 >gi|126140372|ref|XP_001386708.1| 26S protease subunit RPT4 (26S protease subunit SUG2) (Proteasomal cap subunit) [Scheffersomyces stipitis CBS 6054] gi|126093992|gb|ABN68679.1| 26S protease subunit RPT4 (26S protease subunit SUG2) (Proteasomal cap subunit) [Scheffersomyces stipitis CBS 6054] Length = 416 Score = 40.5 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + + + A ++ I ++ E Sbjct: 193 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIRE 244 >gi|15645640|ref|NP_207816.1| recombination factor protein RarA [Helicobacter pylori 26695] gi|2314168|gb|AAD08068.1| conserved hypothetical helicase-like protein [Helicobacter pylori 26695] Length = 391 Score = 40.5 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 64/169 (37%), Gaps = 20/169 (11%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILI--------DTRKPVLLE 114 GP G GK+ LA I + F+ L+ + + + V ++ Sbjct: 38 PHAFFYGPPGVGKTSLAQIIAYMLERPILLFNATDFKLEDLRLKLKNYQNTLLKPVVFID 97 Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 + L+ + I + D +L++ A T ++ + + SR + + +++ + Sbjct: 98 ETHRLNKTQQEFLLPI---MEKDHALILGASTQDPNYSLSHA-IRSR---SFIFELTPLN 150 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 L+++ K + I+ Y++ S A L++ +D A Sbjct: 151 KSDLDRLCAKALTLLKKQIEPGAKTYLLNN---SAGDARALLNLLDLSA 196 >gi|24745880|dbj|BAC23035.1| 26S proteasome AAA-ATPase subunit RPT4a [Solanum tuberosum] gi|76160929|gb|ABA40428.1| 26S proteasome AAA-ATPase subunit RPT4a-like protein [Solanum tuberosum] Length = 398 Score = 40.5 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + V+L GP G+GK+ LA + + ++ ++ I ++ E Sbjct: 171 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIRE-------- 222 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 223 ------MFNYARDHQ 231 >gi|16081896|ref|NP_394300.1| VAT ATPase (VCP-like ATPase) [Thermoplasma acidophilum DSM 1728] gi|11387127|sp|O05209|VAT_THEAC RecName: Full=VCP-like ATPase gi|1916752|gb|AAC45089.1| VCP-like ATPase [Thermoplasma acidophilum] gi|10640117|emb|CAC11969.1| VAT ATPase (VCP-like ATPase) [Thermoplasma acidophilum] Length = 745 Score = 40.5 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 18/32 (56%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 PS+ +L GP G GK+ LA + +S + S Sbjct: 500 PSKGFLLYGPPGVGKTLLAKAVATESNANFIS 531 Score = 39.7 bits (92), Expect = 0.39, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 20/32 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + VIL GP G+GK+ +A +++S + S Sbjct: 223 PPKGVILYGPPGTGKTLIARAVANESGANFLS 254 >gi|87124614|ref|ZP_01080463.1| putative transposase [Synechococcus sp. RS9917] gi|86168186|gb|EAQ69444.1| putative transposase [Synechococcus sp. RS9917] Length = 203 Score = 40.5 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 22/111 (19%) Query: 67 VILVGPSGSGKSCL--------------ANIWSDKSRSTRFSNIAKSLDSILI----DTR 108 ++L GPSG GK+ L + + + D I D Sbjct: 50 LLLFGPSGVGKTHLAIAITMAMAAQDQACRFFPATALVQLLQKAKAAYDLPAILQKLDRY 109 Query: 109 KPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156 ++++DI + ++ + LF +I SLL+T+ W P Sbjct: 110 SLLVIDDISYVRRSELETSVLFELICH-RYERRSLLVTSNQPFREWDDIFP 159 >gi|66475900|ref|XP_627766.1| 26S proteasome regulatory subunit 7 (RPT1)-like. AAA atpase [Cryptosporidium parvum Iowa II] gi|67596376|ref|XP_666072.1| 26S proteasome ATPase subunit [Cryptosporidium hominis TU502] gi|32399011|emb|CAD98476.1| 26s proteasome ATPase subunit, probable [Cryptosporidium parvum] gi|46229183|gb|EAK90032.1| 26S proteasome regulatory subunit 7 (RPT1)-like. AAA atpase [Cryptosporidium parvum Iowa II] gi|54656986|gb|EAL35842.1| 26S proteasome ATPase subunit [Cryptosporidium hominis] Length = 432 Score = 40.5 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 24/155 (15%), Positives = 52/155 (33%), Gaps = 48/155 (30%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V+L GP G+GK+ A ++++ + I L + ++ Sbjct: 207 PPKGVLLYGPPGTGKTLTARAVANRTDACFICVIGSELVQKYVGEGARMVRELFKLARSK 266 Query: 113 ------LEDIDLLD---FNDTQ---------LFHIINSIHQYDSS----LLMTARTF--- 147 ++++D + +++ + I+N + +D+ +LM Sbjct: 267 KACILFIDEVDAIGGARGDESAHGDHEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 326 Query: 148 -PVSW---------GVCLPDLCSRLKAATVVKISL 172 P LPDL R + +I Sbjct: 327 DPALLRPGRLDRKVEFGLPDLEGR---TQIFRIHA 358 >gi|326795235|ref|YP_004313055.1| Holliday junction ATP-dependent DNA helicase ruvB [Marinomonas mediterranea MMB-1] gi|326545999|gb|ADZ91219.1| Holliday junction ATP-dependent DNA helicase ruvB [Marinomonas mediterranea MMB-1] Length = 338 Score = 40.5 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 28/62 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P ++ GP G GK+ LANI +++ + + L+ LED D+L + Sbjct: 54 PLDHTLIFGPPGLGKTTLANIVANEMGADIKTTSGPVLERAGDLAALLTNLEDGDVLFID 113 Query: 123 DT 124 + Sbjct: 114 EI 115 >gi|297828269|ref|XP_002882017.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297327856|gb|EFH58276.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 491 Score = 40.5 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 31/50 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S++T F+ A SL S + + ++ Sbjct: 252 PARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWVGEAEKLV 301 >gi|291550267|emb|CBL26529.1| ATP-dependent metalloprotease FtsH [Ruminococcus torques L2-14] Length = 618 Score = 40.5 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 44/140 (31%), Gaps = 45/140 (32%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 +LVGP G+GK+ LA + ++ FS + + Sbjct: 205 ALLVGPPGTGKTLLAKAVAGEANVPFFSISGSEFVEMFVGMGASKVRDLFKQANEKAPCI 264 Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW---- 151 V +++ID + ND QL ++ +++ A P S Sbjct: 265 VFIDEIDTIGKKRDNAGYGGNDEREQTLNQLLTEMDGFDASKGVVILAATNRPDSLDPAL 324 Query: 152 ----------GVCLPDLCSR 161 V LPDL R Sbjct: 325 LRPGRFDRRIPVELPDLKGR 344 >gi|269976860|ref|ZP_06183834.1| ATP-dependent metallopeptidase HflB [Mobiluncus mulieris 28-1] gi|306819509|ref|ZP_07453216.1| ATP-dependent metalloprotease FtsH [Mobiluncus mulieris ATCC 35239] gi|269934691|gb|EEZ91251.1| ATP-dependent metallopeptidase HflB [Mobiluncus mulieris 28-1] gi|304647801|gb|EFM45119.1| ATP-dependent metalloprotease FtsH [Mobiluncus mulieris ATCC 35239] Length = 765 Score = 40.5 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 31/196 (15%), Positives = 64/196 (32%), Gaps = 43/196 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110 V+L GP G+GK+ LA + ++ S + + Sbjct: 223 VLLYGPPGTGKTLLAKAVAGEAGVPFFSMSGSEFVEMFVGMGASRVRDLFEQARNAAPAI 282 Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + D + L + ++ + + +L+ A P L Sbjct: 283 IFVDEIDAVGRHRGTGMGGGHDEREQTLNQLLVEMDGFDERTNVILIAATNRPDVLDPAL 342 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 L+ V + PD E ++ ++ + D L A + +R A Sbjct: 343 ------LRPGRFDRQVAVEAPDIKGREAILTVHAKNKPLSKDTDLKA-LAKRTP-GFTGA 394 Query: 213 EKLVDKMDNLALSRGM 228 L + ++ AL Sbjct: 395 -DLANVLNEAALLAAR 409 >gi|255326056|ref|ZP_05367144.1| AFG1-family ATPase [Rothia mucilaginosa ATCC 25296] gi|255296947|gb|EET76276.1| AFG1-family ATPase [Rothia mucilaginosa ATCC 25296] Length = 351 Score = 40.5 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 12/98 (12%) Query: 67 VILVGPSGSGKSC-LANIWSDKSR----------STRFSNIAKSLDSILIDTRKPVLLED 115 + L G G GK+ LA++W + + + + K V +++ Sbjct: 87 LYLDGGFGVGKTHLLASLWHYVDGPKAFGTFVEYTNLVGALTFRKTVEALSSYKLVCIDE 146 Query: 116 IDLLDFNDTQLFH-IINSIHQYDSSLLMTARTFPVSWG 152 +L D DT L ++ + L+ T+ T P + G Sbjct: 147 FELDDPGDTVLMSRLMRELADAGVKLVATSNTLPGALG 184 >gi|226953311|ref|ZP_03823775.1| recombination factor protein RarA [Acinetobacter sp. ATCC 27244] gi|226835937|gb|EEH68320.1| recombination factor protein RarA [Acinetobacter sp. ATCC 27244] Length = 425 Score = 40.5 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 34/192 (17%), Positives = 71/192 (36%), Gaps = 34/192 (17%) Query: 49 IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAK-----SLDSI 103 ++ID +I GP G GK+ +A + + S A L + Sbjct: 30 NAPLRQMIDQ---GHLPSIIFWGPPGVGKTTIALLLAQAVDRPFISLSALNTGVKELREV 86 Query: 104 LIDTRKP----VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC 159 + ++ V +++I + + ++N++ + L+ A T S+ V L Sbjct: 87 IAESGDLLTPVVFIDEIHRFNKSQQD--ALLNAV-EKGKITLIGATTENPSFEVNSA-LL 142 Query: 160 SRLKAATVVKISLPDDDFLEKVI------VKMFADRQIFID--KKLAAYIVQRMERSLVF 211 SR V ++ D + ++ ++ K +R I I+ L + Sbjct: 143 SR---CQVYTLNSLDAEAIQTLLNKAIQTDKFLKERFIQIEEYDALIQFAA-------GD 192 Query: 212 AEKLVDKMDNLA 223 A K ++ +D +A Sbjct: 193 ARKALNLIDLIA 204 >gi|226504502|ref|NP_001151994.1| ABC-2 type transporter family protein [Zea mays] gi|195651659|gb|ACG45297.1| ABC-2 type transporter family protein [Zea mays] Length = 643 Score = 40.5 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 12/28 (42%), Positives = 20/28 (71%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRS 90 P R++ L+GPSGSGK+ L N+ + + + Sbjct: 88 PGRLLALMGPSGSGKTTLLNVLAGQLAA 115 >gi|149239116|ref|XP_001525434.1| 26S protease subunit RPT4 [Lodderomyces elongisporus NRRL YB-4239] gi|146450927|gb|EDK45183.1| 26S protease subunit RPT4 [Lodderomyces elongisporus NRRL YB-4239] Length = 434 Score = 40.5 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 23/52 (44%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + + + A + I ++ E Sbjct: 211 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARLIRE 262 >gi|83591529|ref|YP_425281.1| ABC transporter transmembrane region [Rhodospirillum rubrum ATCC 11170] gi|83574443|gb|ABC20994.1| ABC transporter, transmembrane region [Rhodospirillum rubrum ATCC 11170] Length = 593 Score = 40.5 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 3/66 (4%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P +VGPSG+GK+ LA++ + R A S+ + + P L + F Sbjct: 354 PGARTAIVGPSGAGKTTLAHLAA---RFWDPQQGAISIGGVPLSDYAPETLVRLTASVFQ 410 Query: 123 DTQLFH 128 D LFH Sbjct: 411 DVFLFH 416 >gi|57239404|ref|YP_180540.1| Holliday junction DNA helicase RuvB [Ehrlichia ruminantium str. Welgevonden] gi|58579374|ref|YP_197586.1| Holliday junction DNA helicase B [Ehrlichia ruminantium str. Welgevonden] gi|58617429|ref|YP_196628.1| Holliday junction DNA helicase B [Ehrlichia ruminantium str. Gardel] gi|81311314|sp|Q5FG39|RUVB_EHRRG RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|81819219|sp|Q5HAK4|RUVB_EHRRW RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|57161483|emb|CAH58409.1| Holliday junction DNA helicase RuvB [Ehrlichia ruminantium str. Welgevonden] gi|58417041|emb|CAI28154.1| Holliday junction DNA helicase RuvB [Ehrlichia ruminantium str. Gardel] gi|58418000|emb|CAI27204.1| Holliday junction DNA helicase RuvB [Ehrlichia ruminantium str. Welgevonden] Length = 331 Score = 40.5 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 8/73 (10%) Query: 63 PSRVVILVGPSGSGKSCLANIWSD------KSRSTRFSNIAKSLDSIL--IDTRKPVLLE 114 P ++L GP G GK+ LA+I + +S + + A L +IL + R + ++ Sbjct: 52 PIDHILLYGPPGLGKTTLAHIIAKELKVNFRSTAGPLLSKAGDLAAILTNLQARDVLFID 111 Query: 115 DIDLLDFNDTQLF 127 +I L+ N ++ Sbjct: 112 EIHRLNRNIEEIL 124 >gi|11498895|ref|NP_070126.1| cell division protein CDC48 [Archaeoglobus fulgidus DSM 4304] gi|41688749|sp|O28972|Y1297_ARCFU RecName: Full=Cell division cycle protein 48 homolog AF_1297 gi|2649281|gb|AAB89948.1| cell division control protein 48, AAA family (cdc48-1) [Archaeoglobus fulgidus DSM 4304] Length = 733 Score = 40.5 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 21/38 (55%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P R ++L GP G+GK+ LA +++S + S L Sbjct: 488 PPRGILLFGPPGTGKTLLAKAVANESNANFISVKGPEL 525 Score = 40.5 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 23/163 (14%), Positives = 63/163 (38%), Gaps = 33/163 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109 P + V+L GP G+GK+ +A +++ + + L I + ++ Sbjct: 215 PPKGVLLYGPPGTGKTLIAKAVANEVDAHFIPISGPEIMSKYYGESEQRLREIFEEAKEN 274 Query: 110 ---PVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + +++ A P + Sbjct: 275 APSIIFIDEIDSIAPKREEVTGEVERRVVAQLLALMDGLEARGDVIVIAATNRPDAID-- 332 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L + ++I +PD + ++++ R++ + + + Sbjct: 333 -PALRRPGRFDREIEIGVPDKEGRKEILE--IHTRKMPLAEDV 372 >gi|310779039|ref|YP_003967372.1| ABC transporter related protein [Ilyobacter polytropus DSM 2926] gi|309748362|gb|ADO83024.1| ABC transporter related protein [Ilyobacter polytropus DSM 2926] Length = 227 Score = 40.5 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 22/45 (48%) Query: 66 VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110 +L GPSGSGK+ L NI R+T + +D L+ + Sbjct: 35 FTVLAGPSGSGKTTLLNIIGAMDRATSGKALVDGVDLSLLKPKDA 79 >gi|302308716|ref|NP_985735.2| AFR188Wp [Ashbya gossypii ATCC 10895] gi|299790761|gb|AAS53559.2| AFR188Wp [Ashbya gossypii ATCC 10895] Length = 827 Score = 40.5 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 12/28 (42%), Positives = 18/28 (64%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS 94 V+L GP G GK+ LA +++SR+ S Sbjct: 560 VLLWGPPGCGKTLLAKAVANESRANFIS 587 >gi|298708669|emb|CBJ26156.1| putative; katanin like protein [Ectocarpus siliculosus] Length = 452 Score = 40.5 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 22/38 (57%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P + ++L GP G+GKS LA + +S + F+ + L Sbjct: 164 PWKGILLYGPPGTGKSYLAKAVATESDAVFFAVSSSDL 201 >gi|240948710|ref|ZP_04753082.1| recombination factor protein RarA [Actinobacillus minor NM305] gi|240296926|gb|EER47504.1| recombination factor protein RarA [Actinobacillus minor NM305] Length = 444 Score = 40.5 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 65/200 (32%), Gaps = 35/200 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I GP G+GK+ LA I + + R S + + I + ++ T Sbjct: 52 MIFWGPPGTGKTTLAEIIAYHFDADVERLSAVTSGIKEIREAIERA----KLNRQTGRRT 107 Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N Q D +++ T L SR A V + Sbjct: 108 LLFVDEVHRFNKSQQDAFLPYIEDGTIIFIGATTENPSFELNNA---LLSR---ARVYIL 161 Query: 171 SLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + V+ D R + + + + + +A +++M ++A Sbjct: 162 KPLQPADVLVVLQNALNDKTRGLGAEKIILKDNVLNLLADYVNGDARYALNCLEQMSDMA 221 Query: 224 LS--RGMGITRSLAAEVLKE 241 G +L E+L E Sbjct: 222 TQTEAGKLFDLNLLTEILGE 241 >gi|257791250|ref|YP_003181856.1| IstB domain-containing protein ATP-binding protein [Eggerthella lenta DSM 2243] gi|257475147|gb|ACV55467.1| IstB domain protein ATP-binding protein [Eggerthella lenta DSM 2243] Length = 247 Score = 40.5 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 59/151 (39%), Gaps = 32/151 (21%) Query: 56 IDSWPSWPSRVVILVGPSGSGKSC----LANIWSDKSRSTRFSNIAKSLDSILI------ 105 ++S+ R + + G G GKS LAN + D T F+ + L+ I Sbjct: 90 LESFEGSAGRGLYIYGSVGRGKSYSAAALANAFVDAGYRTVFTTASAMLERIKASFSGNG 149 Query: 106 ---------DTRKPVLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 ++L+D+ D +++ +F +IN+ ++ + T+ P + Sbjct: 150 ETDSVISRYAACDVLVLDDLGKEDAKEWSSNMMFLVINARYENMRPTIFTSNYSPQALSK 209 Query: 154 CLPD---------LCSRLKAATV-VKISLPD 174 L + SRL T+ + ++ PD Sbjct: 210 RLGRKGETETAEAIASRLSETTIPIHLTGPD 240 >gi|227495470|ref|ZP_03925786.1| crossover junction endodeoxyribonuclease ATPase [Actinomyces coleocanis DSM 15436] gi|226831017|gb|EEH63400.1| crossover junction endodeoxyribonuclease ATPase [Actinomyces coleocanis DSM 15436] Length = 444 Score = 40.5 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 65/155 (41%), Gaps = 25/155 (16%) Query: 54 RLID-SWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDT 107 RL++ + P+ VIL GP G GK+ LA + + S S+ K + ++ + Sbjct: 48 RLLEPADPAKAVSSVILWGPPGVGKTTLAYLVARSSGRHFAEVSAVSSGVKEVRDVISEA 107 Query: 108 RKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL----------LMTARTFPVSWGVCLPD 157 ++ + + + + F D + SL L+ A T S+ V P Sbjct: 108 KRHLATDGKETILFIDE----VHRFSKSQQDSLLPAVENRWVTLIAATTENPSFSVISP- 162 Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFAD-RQI 191 L SR + ++ ++ +D + K+I + D R + Sbjct: 163 LLSR---SILLTLNPLEDADIAKLIHRALDDKRGL 194 >gi|224047252|ref|XP_002194423.1| PREDICTED: nuclear VCP-like [Taeniopygia guttata] Length = 857 Score = 40.5 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 63/179 (35%), Gaps = 45/179 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDK--------SRSTRFSNIAKS--------LDSILID 106 P R +L GP G GK+ LA + + + + S ++ D + Sbjct: 295 PPRGFLLHGPPGCGKTLLAQAIAGELELPMLKVAATEIVSGVSGESEQKLRELFDQAVSS 354 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151 + +++ID + Q + N++ L++ A P S Sbjct: 355 APCVLFIDEIDAITPKREVASKDMERRIVAQFLTCMDDLNNVAATTQVLVIGATNRPDSL 414 Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER 207 P L +A + + +PD+ EK++ + R++ + + + + + R Sbjct: 415 D---PALR---RAGRFDREICLGIPDEGAREKILQTLC--RKLKLPES---FEFRHLAR 462 >gi|327303788|ref|XP_003236586.1| sister chromatid cohesion factor [Trichophyton rubrum CBS 118892] gi|326461928|gb|EGD87381.1| sister chromatid cohesion factor [Trichophyton rubrum CBS 118892] Length = 972 Score = 40.5 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 13/83 (15%) Query: 29 FFSFP--RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 FP + +D + D+ +V++L GP G GK+ LA+I + Sbjct: 253 PIVFPGLAKPKLKKDSF----SN-------DAEERAHRKVLLLTGPPGLGKTTLAHICAK 301 Query: 87 KSRSTRFSNIAKSLDSILIDTRK 109 + A S + T + Sbjct: 302 QVGYEILEINASDERSRTVVTGR 324 >gi|322383610|ref|ZP_08057366.1| hypothetical protein PL1_2057 [Paenibacillus larvae subsp. larvae B-3650] gi|321152014|gb|EFX44952.1| hypothetical protein PL1_2057 [Paenibacillus larvae subsp. larvae B-3650] Length = 173 Score = 40.5 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 18/121 (14%), Positives = 42/121 (34%), Gaps = 21/121 (17%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIA----------------KSLDSILIDT 107 S + L+G G+GK+ L ++ + + + Sbjct: 30 SNSIALLGRPGAGKTHLLMAVANNLLARGIGVVYFPYVEGFNELRKDLDQLDERVRRLQQ 89 Query: 108 RKPVLLEDI-----DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL 162 + + ++D+ + ++ QLF IIN + +L+++ + SRL Sbjct: 90 AEVLFIDDLFKGRSEPTEWQKEQLFAIINYRNLQKLPMLISSERNFAQMVDIDEAIGSRL 149 Query: 163 K 163 + Sbjct: 150 R 150 >gi|301787789|ref|XP_002929310.1| PREDICTED: 26S protease regulatory subunit 10B-like [Ailuropoda melanoleuca] Length = 403 Score = 40.5 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + ++ S+ I ++ E Sbjct: 180 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESACLIRE-------- 231 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 232 ------MFNYARDHQ 240 >gi|302035799|ref|YP_003796121.1| holliday junction ATP-dependent DNA helicase RuvB [Candidatus Nitrospira defluvii] gi|300603863|emb|CBK40195.1| Holliday junction ATP-dependent DNA helicase RuvB [Candidatus Nitrospira defluvii] Length = 345 Score = 40.5 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 39/197 (19%), Positives = 73/197 (37%), Gaps = 27/197 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI--------LIDTRKPVLLEDIDL 118 I GP G GK+ +A+I + + S S L + R + +++I Sbjct: 56 AIFYGPPGLGKTTIAHIIAREMGSAIRSTSGLVLSHAGDLAAILTNLQERDVLFIDEIHR 115 Query: 119 LDFN-DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD------------LCS--RLK 163 L + + L ++ Y L++ + + LP L S R + Sbjct: 116 LPASVEEAL---YPAMEDYQLDLVVGQGASTRTVKLELPRFTLVGATTRAGALTSPLRDR 172 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNL 222 V ++ L ++ + I ID+ AA I +R + +L+ ++ D Sbjct: 173 FGLVHRLEFYSPQELTSIVTRSAGLLNIPIDEAGAAEIARRARGTPRIVNRLIKRIRDYA 232 Query: 223 ALSRGMGITRSLAAEVL 239 + G ITR +A + L Sbjct: 233 EIKAGGRITRQVAQDAL 249 >gi|298674100|ref|YP_003725850.1| 26S proteasome subunit P45 family protein [Methanohalobium evestigatum Z-7303] gi|298287088|gb|ADI73054.1| 26S proteasome subunit P45 family [Methanohalobium evestigatum Z-7303] Length = 446 Score = 40.5 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 25/53 (47%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 ++L GP G+GK+ LA + ++ ++ + L I ++ E ++ Sbjct: 225 ILLAGPPGTGKTLLAKAVAHRTDASFIRVVGSELVQKYIGEGAKLVREVFEMA 277 >gi|197301766|ref|ZP_03166836.1| hypothetical protein RUMLAC_00492 [Ruminococcus lactaris ATCC 29176] gi|197299206|gb|EDY33736.1| hypothetical protein RUMLAC_00492 [Ruminococcus lactaris ATCC 29176] Length = 622 Score = 40.5 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 44/140 (31%), Gaps = 45/140 (32%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 +LVGP G+GK+ LA + ++ FS + + Sbjct: 205 ALLVGPPGTGKTLLAKAVAGEANVPFFSMSGSEFVEMFVGMGASKVRDLFKQANEKAPCI 264 Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW---- 151 V +++ID + ND QL ++ +++ A P S Sbjct: 265 VFIDEIDTIGKKRDNAGYGGNDEREQTLNQLLTEMDGFDASKGVVILAATNRPDSLDPAL 324 Query: 152 ----------GVCLPDLCSR 161 V LPDL R Sbjct: 325 LRPGRFDRRIPVELPDLKGR 344 >gi|34329323|gb|AAQ24845.2| non-structural polyprotein [Calicivirus isolate 2117] Length = 1816 Score = 40.5 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP+G GK+ LA + + S + S + ++D T V + ID D N Sbjct: 506 IILTGPAGCGKTTLAYAIASRLSSQKPSVLNLNIDHHDAYTGNEVCI--IDEFDSNPESN 563 Query: 127 F 127 F Sbjct: 564 F 564 >gi|46199430|ref|YP_005097.1| cell division protein ftsH [Thermus thermophilus HB27] gi|55981461|ref|YP_144758.1| cell division protein FtsH [Thermus thermophilus HB8] gi|81363931|sp|Q5SI82|FTSH_THET8 RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|46197056|gb|AAS81470.1| cell division protein ftsH [Thermus thermophilus HB27] gi|55772874|dbj|BAD71315.1| cell division protein FtsH [Thermus thermophilus HB8] Length = 624 Score = 40.5 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 21/48 (43%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 V+LVGP G GK+ LA + ++R + + + + + Sbjct: 192 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRD 239 >gi|308497384|ref|XP_003110879.1| CRE-YMEL-1 protein [Caenorhabditis remanei] gi|308242759|gb|EFO86711.1| CRE-YMEL-1 protein [Caenorhabditis remanei] Length = 735 Score = 40.5 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 25/53 (47%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 V+LVGP G+GK+ LA + +++ F D +L+ + + D Sbjct: 280 VLLVGPPGTGKTLLARAIAGEAQVPFFHTSGSEFDEVLVGQGARRVRDLFDKA 332 >gi|307594201|ref|YP_003900518.1| AAA family ATPase [Vulcanisaeta distributa DSM 14429] gi|307549402|gb|ADN49467.1| AAA family ATPase, CDC48 subfamily [Vulcanisaeta distributa DSM 14429] Length = 737 Score = 40.5 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 17/114 (14%), Positives = 42/114 (36%), Gaps = 28/114 (24%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110 P + V+L+GP G+GK+ LA + ++ + + + S + Sbjct: 218 PPKGVLLIGPPGTGKTLLAKAVATETNAYFIAINGPEIVSKYYGESEAKLREIFEEAKKN 277 Query: 111 ----VLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP 148 + +++ID + QL +++ + + +++ A P Sbjct: 278 APAIIFIDEIDAIAPKREEVTGEVEKRIVAQLLTLMDGLQERGQVIVIGATNRP 331 Score = 38.6 bits (89), Expect = 0.81, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 19/32 (59%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + ++L GP G+GK+ LA + +S + + Sbjct: 494 PPKGILLFGPPGTGKTLLAKAVATESNANFIA 525 >gi|302795259|ref|XP_002979393.1| hypothetical protein SELMODRAFT_110504 [Selaginella moellendorffii] gi|300153161|gb|EFJ19801.1| hypothetical protein SELMODRAFT_110504 [Selaginella moellendorffii] Length = 491 Score = 40.5 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 9/27 (33%), Positives = 17/27 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSR 89 P R ++L GP G+GK+ +A + ++ Sbjct: 255 PCRGMLLFGPPGTGKTHIAKAIASEAN 281 >gi|301104184|ref|XP_002901177.1| ribosome biogenesis ATPase RIX7 [Phytophthora infestans T30-4] gi|262101111|gb|EEY59163.1| ribosome biogenesis ATPase RIX7 [Phytophthora infestans T30-4] Length = 771 Score = 40.5 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 62/169 (36%), Gaps = 43/169 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS----------------LDSILID 106 P R V+L GP G+GKS LA+ + + +T A D + Sbjct: 184 PPRGVLLHGPPGTGKSMLAHAIAGECGATFLKISAPEVVSGMSGESEQKLRELFDEAISR 243 Query: 107 TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL---LMTARTF---------PVSW--G 152 + +++ID + S + + L+T+ PV Sbjct: 244 APSIIFIDEIDAITPKRET------SARGMEKRIVAQLLTSTDSLSLENTGGKPVILIGA 297 Query: 153 VCLPD-LCSRLKAATVVK----ISLPDDDFLEKVIVKMFADRQIFIDKK 196 PD L S L+ A + +PD++ EK++ + R++ ++ + Sbjct: 298 TNRPDALDSALRRAGRFDREICLGIPDEEAREKILRVLA--RKMTLEGE 344 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 11/28 (39%), Positives = 16/28 (57%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS 94 V+L GP G GK+ LA + +S + S Sbjct: 487 VLLYGPPGCGKTLLAKAIAHESGANFIS 514 >gi|226482564|emb|CAX73881.1| Proteasome 26S subunit subunit 4 ATPase [Schistosoma japonicum] gi|226482566|emb|CAX73882.1| Proteasome 26S subunit subunit 4 ATPase [Schistosoma japonicum] Length = 436 Score = 40.5 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 32/206 (15%), Positives = 68/206 (33%), Gaps = 45/206 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + VIL G G+GK+ LA ++++ +T + L + ++ Sbjct: 214 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRLAEEN 273 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTART---- 146 +++ID + + ++N + + D ++M Sbjct: 274 APSIVFIDEIDAVGTKRYESNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 333 Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206 P D ++ LPD+ ++ + + D L Y+V + E Sbjct: 334 DPALIRPGRIDRK--------IEFPLPDEKTKRRIFSIHTSRMTLAEDVNLEEYVVSKDE 385 Query: 207 RSLVFAEKLVDKMDNLALSRGM-GIT 231 S + + + LAL +T Sbjct: 386 LSGADIKAICTEAGLLALRERRMKVT 411 >gi|257125126|ref|YP_003163240.1| Holliday junction DNA helicase RuvB [Leptotrichia buccalis C-1013-b] gi|257049065|gb|ACV38249.1| Holliday junction DNA helicase RuvB [Leptotrichia buccalis C-1013-b] Length = 337 Score = 40.5 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 32/189 (16%), Positives = 65/189 (34%), Gaps = 30/189 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G GK+ LA + + + L+ LE+ D+L ++ Sbjct: 56 ILLYGPPGLGKTTLAGVIATEMGVNLKITTGPVLEKAGDLAAILTSLEENDILFIDEI-- 113 Query: 127 FHIINS--------IHQYDSSLLMTARTFPVS-WGVCLPD----------------LCSR 161 H +N+ + ++ + V LP L R Sbjct: 114 -HRLNTSVEEILYPAMEDGELDILIGKGPSARSIRVELPRFTLIGATTRAGQLSTPLRDR 172 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 ++ ++ L+++I + I D+ I +R + A +L+ + + Sbjct: 173 FGVTHRMEYYQLEE--LKEIIRRGANILNISYDEDGITEIAKRSRGTPRIANRLLKRARD 230 Query: 222 LALSRGMGI 230 AL G G+ Sbjct: 231 FALVEGSGV 239 >gi|303280281|ref|XP_003059433.1| predicted protein [Micromonas pusilla CCMP1545] gi|226459269|gb|EEH56565.1| predicted protein [Micromonas pusilla CCMP1545] Length = 673 Score = 40.5 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 24/48 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110 P R V+L GP G GK+ LA+ + ++ FS A + + + + Sbjct: 46 PPRGVLLHGPPGCGKTTLAHAIAREAGVPFFSIAATEIVAGVSGESEA 93 >gi|194869501|ref|XP_001972464.1| GG15543 [Drosophila erecta] gi|190654247|gb|EDV51490.1| GG15543 [Drosophila erecta] Length = 398 Score = 40.5 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + +L GP G+GK+ LA + + + ++ ++ I ++ E Sbjct: 175 PPKGCLLYGPPGTGKTLLARAIASQMDANFLKVVSSAIVDKYIGESARLIRE 226 >gi|163841106|ref|YP_001625511.1| AFG1 family ATPase [Renibacterium salmoninarum ATCC 33209] gi|162954582|gb|ABY24097.1| AFG1-family ATPase [Renibacterium salmoninarum ATCC 33209] Length = 361 Score = 40.5 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 12/98 (12%) Query: 67 VILVGPSGSGKSC-LANIWSDKSR----------STRFSNIAKSLDSILIDTRKPVLLED 115 + L G G GK+ LA++W + + ++ + K V +++ Sbjct: 98 IYLDGGFGVGKTHLLASLWHEAPGPKAFGTFVEYTNLVGALSFRKTVEALKEYKLVCIDE 157 Query: 116 IDLLDFNDTQLFH-IINSIHQYDSSLLMTARTFPVSWG 152 +L D DT L ++ + L T+ T P S G Sbjct: 158 FELDDPGDTVLMSRLMRELADAGVRLAATSNTLPGSLG 195 >gi|8051696|dbj|BAA96090.1| FtsH [Thermus thermophilus] Length = 624 Score = 40.5 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 21/48 (43%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 V+LVGP G GK+ LA + ++R + + + + + Sbjct: 192 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRD 239 >gi|85717673|ref|ZP_01048610.1| putative transposase [Nitrobacter sp. Nb-311A] gi|85695496|gb|EAQ33417.1| putative transposase [Nitrobacter sp. Nb-311A] Length = 521 Score = 40.5 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 22/110 (20%) Query: 64 SRVVILVGPSGSGKSCLANIWS-------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 R V+LVG +G+GK+ LA + + R ++ L+ + R+ L E + Sbjct: 332 QRNVVLVGGTGTGKTHLAIAIARSCIRSGARGRFYNVVDLVNRLEIETRNGRQGRLAEHL 391 Query: 117 ---DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 D + ++ LFH+++ +++ +S+++T W Sbjct: 392 TRMDFIVLDELGYLPFAQSGGQLLFHLVSRLYER-ASVIVTTNLAFGEWP 440 >gi|269956671|ref|YP_003326460.1| AFG1-family ATPase [Xylanimonas cellulosilytica DSM 15894] gi|269305352|gb|ACZ30902.1| AFG1-family ATPase [Xylanimonas cellulosilytica DSM 15894] Length = 358 Score = 40.5 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 61/190 (32%), Gaps = 40/190 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRS------------------TRFSNIAKSLDSIL 104 + V L G G GK+ L + + + Sbjct: 87 AAPAVYLDGGFGVGKTHLLASLAHAVTADGPDGADQIAYGTFVEYTNLVGALGFQNTVAA 146 Query: 105 IDTRKPVLLEDIDLLDFNDTQLFH-IINSIHQYDSSLLMTARTFPVSWG---VCLPD--- 157 + +K V +++ +L D DT L ++ + +L T+ T P + G D Sbjct: 147 LAAKKLVCIDEFELDDAGDTTLMSRLLRELTDRGVALAATSNTLPEALGEGRFAAEDFLR 206 Query: 158 ----LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213 L SR + V DD V+ D + + AY R + + Sbjct: 207 EIQALASRFEVMRV----DGDDYRHRAVV----TDSRPLPADVVGAYAATRPD---ATCD 255 Query: 214 KLVDKMDNLA 223 + D +D+LA Sbjct: 256 RFGDLLDHLA 265 >gi|207725169|ref|YP_002255565.1| transposition helper protein [Ralstonia solanacearum MolK2] gi|206590403|emb|CAQ37365.1| probable transposition helper protein [Ralstonia solanacearum MolK2] Length = 226 Score = 40.5 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 47/130 (36%), Gaps = 30/130 (23%) Query: 51 QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110 ++ I+ + V+L+GPSG GK+ +A+ + ++ + +++ Sbjct: 57 ASLAFIERAEN-----VVLLGPSGVGKTHIASALAYRATQAGIKTRFITAADLMMQLATA 111 Query: 111 -------------------VLLEDIDLLDF--NDTQLFHIINSI--HQYDSSLLMTARTF 147 +++++I L F + LF N + ++++T+ Sbjct: 112 RQQNRLREFFNRAVIGPRLLVIDEIGYLPFGREEADLF--FNVVAKRYERGAIVLTSNLP 169 Query: 148 PVSWGVCLPD 157 W D Sbjct: 170 FTQWATAFAD 179 >gi|330875796|gb|EGH09945.1| recombination factor protein RarA [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 440 Score = 40.5 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 36/210 (17%), Positives = 77/210 (36%), Gaps = 32/210 (15%) Query: 57 DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 ++ +I GP G GK+ LA + + S + F ++ L + + + + Sbjct: 40 EALEQGALHSMIFWGPPGVGKTTLARLLAKVSDAH-FETVSAVLAGVKEIRQAVEVAKQQ 98 Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162 T LF H N Q D +L+ T L SR Sbjct: 99 AGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154 Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLV 216 A V + D+ L K++ + + R++ + + A ++ + +++ Sbjct: 155 --ARVYVLKSLDEAALRKLVNRALTEDRGLGQRKLTLSDEGFAMLMAAAD---GDGRRML 209 Query: 217 DKMDNLA-LSR-GMGITRSLAAEVLKETQQ 244 + ++N + L+ G I L +L ++++ Sbjct: 210 NLLENASDLAEDGSEIDLELLQSLLGDSRR 239 >gi|321309519|ref|YP_004191848.1| chromosomal replication initiator protein DnaA [Mycoplasma haemofelis str. Langford 1] gi|319801363|emb|CBY92009.1| chromosomal replication initiator protein DnaA [Mycoplasma haemofelis str. Langford 1] Length = 420 Score = 40.5 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 20/47 (42%) Query: 41 DDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87 ++ V + ++ + S V L G G+GKS L + ++ Sbjct: 98 ENFFVCEYNSSTINKLEEFLRSDSDVFYLWGNKGTGKSHLIAFFINQ 144 >gi|325973706|ref|YP_004250770.1| cell division protein FtsH [Mycoplasma suis str. Illinois] gi|325990149|ref|YP_004249848.1| cell division protease ftsH-like protein [Mycoplasma suis KI3806] gi|323575234|emb|CBZ40899.1| Cell division protease ftsH-like protein [Mycoplasma suis] gi|323652308|gb|ADX98390.1| cell division protein FtsH [Mycoplasma suis str. Illinois] Length = 765 Score = 40.5 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 53/158 (33%), Gaps = 37/158 (23%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK----------------P 110 VIL GP G+GK+ LA S +S S D + + Sbjct: 335 VILYGPPGTGKTLLAKAVSGESNVPFLEASGASFDDMFVGVGAKRVRELFEKAKKLSPCI 394 Query: 111 VLLEDIDLLDFNDTQLFHI-------INS-------IHQYDSSLLMTA--RTFPVSWGVC 154 + +++ID L F++ IN + +++ A R + V Sbjct: 395 IFIDEIDALAGKRGGKFNLQQGNEQTINQLLSEMDGFNTQAGIIVIAATNRLESIDDAVL 454 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF 192 P R ++I LPD +++ ++ + Sbjct: 455 RP---GRFD--RHIQIDLPDIAERREILKLHAKNKNLS 487 >gi|315425454|dbj|BAJ47117.1| AAA family ATPase [Candidatus Caldiarchaeum subterraneum] Length = 726 Score = 40.5 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 20/32 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P R ++L GP G+GK+ LA + +S++ S Sbjct: 491 PPRGILLYGPPGTGKTLLAKAVATESQANFIS 522 Score = 39.0 bits (90), Expect = 0.64, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 20/32 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + VIL GP G+GK+ +A ++++ + S Sbjct: 218 PPKGVILYGPPGTGKTLIAKAIANETGAHFVS 249 >gi|297803738|ref|XP_002869753.1| hypothetical protein ARALYDRAFT_492469 [Arabidopsis lyrata subsp. lyrata] gi|297315589|gb|EFH46012.1| hypothetical protein ARALYDRAFT_492469 [Arabidopsis lyrata subsp. lyrata] Length = 933 Score = 40.5 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 34/100 (34%), Gaps = 21/100 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110 P V+L GP G GK+ +A + ++ + +L+ Sbjct: 449 PPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVN 508 Query: 111 ----VLLEDIDLLDFNDTQLF-----HIINSIHQYDSSLL 141 + +++ID L +F + N+ Q + L Sbjct: 509 KPSVIFIDEIDALATRRQGIFKENSDQLYNAATQERETTL 548 >gi|225680854|gb|EEH19138.1| 26S protease regulatory subunit S10B [Paracoccidioides brasiliensis Pb03] Length = 382 Score = 40.5 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 28/198 (14%), Positives = 68/198 (34%), Gaps = 52/198 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID--------------TR 108 P + V+L GP G+GK+ LA + + ++ ++ I Sbjct: 159 PPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYAKEH 218 Query: 109 KPVLL--EDIDLLDFN------------DTQLFHIINSIHQ---YDSSLLMTARTFPVSW 151 +P ++ ++ID + L ++N + + ++ A P + Sbjct: 219 EPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDYLGKTKIIMATNRPDTL 278 Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 L L+A + ++I LP++ +++ + + I+ ++ Sbjct: 279 DPAL------LRAGRLDRKIEIPLPNEVGRLEILKIHAS--GVAIEGEI----------D 320 Query: 209 LVFAEKLVDKMDNLALSR 226 K+ D ++ L Sbjct: 321 FESIVKMSDGLNGADLRN 338 >gi|254469906|ref|ZP_05083311.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudovibrio sp. JE062] gi|211961741|gb|EEA96936.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pseudovibrio sp. JE062] Length = 421 Score = 40.5 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 6/53 (11%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 ++LVGP+G GK+ LA + R ++ ++ T + ED++ + Sbjct: 114 ILLVGPTGCGKTHLAQTLA------RILDVPFTMADATTLTEAGYVGEDVENI 160 >gi|206587550|emb|CAQ18132.1| probable transposition helper protein (partial sequence c terminus) [Ralstonia solanacearum MolK2] Length = 553 Score = 40.5 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 47/130 (36%), Gaps = 30/130 (23%) Query: 51 QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110 ++ I+ + V+L+GPSG GK+ +A+ + ++ + +++ Sbjct: 384 ASLAFIERAEN-----VVLLGPSGVGKTHIASALAYRATQAGIKTRFITAADLMMQLATA 438 Query: 111 -------------------VLLEDIDLLDF--NDTQLFHIINSI--HQYDSSLLMTARTF 147 +++++I L F + LF N + ++++T+ Sbjct: 439 RQQNRLREFFNRAVIGPRLLVIDEIGYLPFGREEADLF--FNVVAKRYERGAIVLTSNLP 496 Query: 148 PVSWGVCLPD 157 W D Sbjct: 497 FTQWATAFAD 506 >gi|322368342|ref|ZP_08042911.1| proteasome-activating nucleotidase [Haladaptatus paucihalophilus DX253] gi|320552358|gb|EFW94003.1| proteasome-activating nucleotidase [Haladaptatus paucihalophilus DX253] Length = 407 Score = 40.5 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 27/64 (42%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P V+L GP G+GK+ LA ++++ +T L I ++ + L Sbjct: 184 PPSGVLLHGPPGTGKTMLAKAVANRTDATFIKMAGSELVQKFIGEGAKLVRDLFSLAAER 243 Query: 123 DTQL 126 + + Sbjct: 244 EPAV 247 >gi|309364944|emb|CAP23560.2| hypothetical protein CBG_03070 [Caenorhabditis briggsae AF16] Length = 865 Score = 40.5 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 513 PSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKA 569 Score = 37.4 bits (86), Expect = 1.8, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 34/74 (45%), Gaps = 16/74 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ S F SN+ K+ + + Sbjct: 243 PPRGILLFGPPGTGKTLIARAVANETGSFFFLINGPEVMSKMSGESESNLRKAFEECEKN 302 Query: 107 TRKPVLLEDIDLLD 120 + +++ID + Sbjct: 303 QPAILFIDEIDAIA 316 >gi|239994321|ref|ZP_04714845.1| recombination factor protein RarA [Alteromonas macleodii ATCC 27126] Length = 435 Score = 40.5 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 63/179 (35%), Gaps = 34/179 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G+GK+ LA + + ++++ A + I E+ +N L Sbjct: 48 MILWGPPGTGKTTLAELIAQYTKASVLRISAVTSGVKDIRAAMDTAEENA---RYNQRTL 104 Query: 127 F-----HIINSIHQYD----------SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 H N Q + + T L SR++ V + Sbjct: 105 LFVDEVHRFNKSQQDAFLPFVESGVVTFIGATTENPSFELNKA---LLSRVR---VYVLK 158 Query: 172 LPDDDFLEKVIVKMFA-------DRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + + L ++I + + DR + I + + ++ S A +L+ ++ A Sbjct: 159 TLEHEALSELIDRALSDTEKGLGDRALGIKETARNAL---IDLSGGDARRLLTYLELAA 214 >gi|226293403|gb|EEH48823.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18] Length = 854 Score = 40.5 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 19/40 (47%), Positives = 27/40 (67%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P+R ++L GP G+GK+ LA + +S+ST FS A SL S Sbjct: 598 PARGMLLFGPPGTGKTMLARAVATESQSTFFSVSASSLTS 637 >gi|238506283|ref|XP_002384343.1| conserved hypothetical protein [Aspergillus flavus NRRL3357] gi|220689056|gb|EED45407.1| conserved hypothetical protein [Aspergillus flavus NRRL3357] Length = 961 Score = 40.5 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 33/209 (15%), Positives = 74/209 (35%), Gaps = 41/209 (19%) Query: 68 ILVGPSGSGKSCLANIWSD--------KSRSTRFSNIAK-----SLDSILIDTRKPVLLE 114 + GP G+GK+ A +++ S ++ D IL T L+ Sbjct: 437 VFAGPPGTGKTTAAKLYAQILADLGLLSSGEVTVKPLSAFNNVSDTDDILSSTVGKALII 496 Query: 115 DIDLLDFNDTQLFHIINSIH-----------QYDSSLLMTARTFPVSWGVCLPDLC--SR 161 D++ + +D F + +S+ + ++L+ + + LP+L SR Sbjct: 497 DMNTPETDDND-FQVYDSVLDMLIKELSANGENRCTILVGSDHAVDTL---LPELKEASR 552 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV-----QRMERSLVFAEKLV 216 + VV+ + +E++ ++ + + + RM + A + Sbjct: 553 MLEHQVVRFQPLTREQMEELFQAKLQEQDVDATPEAFQAAMDILESARMRKDFDNARGI- 611 Query: 217 DKMDNLA-----LSRGMGITRSLAAEVLK 240 +++ A R L+ VL+ Sbjct: 612 ERLLTAANRNFDQRRSRAPDGPLSQRVLE 640 >gi|167837525|ref|ZP_02464408.1| recombination factor protein RarA [Burkholderia thailandensis MSMB43] Length = 436 Score = 40.5 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 61/173 (35%), Gaps = 28/173 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA + + + A I + ++ + T L Sbjct: 50 MILWGPPGVGKTTLARLTALAFDCEFIALSAVLGGVKDIREAMEQARDTLNRTGRH-TIL 108 Query: 127 F----HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 F H N Q +LL + A T S+ V L SR A V + Sbjct: 109 FVDEIHRFNKAQQD--ALLPFVESGLVTFIGATTENPSFEVNSA-LLSR---AQVYVLKS 162 Query: 173 PDDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 +D L +++ K D + D K +V + A + ++ ++ Sbjct: 163 LAEDELRQLL-KRAQDTALDGLAFDGKAVDTLVGYAD---GDARRFLNLLEQA 211 >gi|225444572|ref|XP_002273189.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|297738493|emb|CBI27738.3| unnamed protein product [Vitis vinifera] Length = 425 Score = 40.5 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 23/50 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P + V+ GP G+GK+ LA ++++ + I L + ++ Sbjct: 200 PPKGVLFYGPPGTGKTLLARAVANRTGACFIRVIGSELVRRYVGEGARMV 249 >gi|149580085|ref|XP_001511387.1| PREDICTED: similar to proteasome (prosome, macropain) 26S subunit ATPase 3, partial [Ornithorhynchus anatinus] Length = 324 Score = 40.5 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V++ GP G+GK+ LA + ++++T L + I ++ + Sbjct: 92 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRD 143 >gi|72092070|ref|XP_784405.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] gi|115940005|ref|XP_001186119.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] Length = 271 Score = 40.5 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 41/105 (39%), Gaps = 20/105 (19%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + V+L GP G GK+ +A + + + A +L + + Sbjct: 131 PPKGVLLYGPPGCGKTMIAKAIAKDAGCRFINLQASNLTDKWYGESQKLA---------- 180 Query: 123 DTQLFHII------NSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161 + +F ++ N D+++L R P S+ + +PD R Sbjct: 181 -SAVFSLVIVMGATNRPQDVDAAIL---RRMPTSFHIGMPDKAQR 221 >gi|14590135|ref|NP_142199.1| proteasome-activating nucleotidase [Pyrococcus horikoshii OT3] gi|20532203|sp|O57940|PAN_PYRHO RecName: Full=Proteasome-activating nucleotidase; Short=PAN; AltName: Full=Proteasomal ATPase; AltName: Full=Proteasome regulatory ATPase; AltName: Full=Proteasome regulatory particle gi|3256587|dbj|BAA29270.1| 399aa long hypothetical 26S protease regulatory subunit [Pyrococcus horikoshii OT3] Length = 399 Score = 40.5 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 23/52 (44%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G GK+ +A + + +T + L I ++ E Sbjct: 173 PPKGVLLYGPPGCGKTLMAKALAHEVNATFIRVVGSELVRKYIGEGARLVHE 224 >gi|321264368|ref|XP_003196901.1| DNA-dependent ATPase MGS1 (Maintenance of genome stability protein 1) [Cryptococcus gattii WM276] gi|317463379|gb|ADV25114.1| DNA-dependent ATPase MGS1 (Maintenance of genome stability protein 1), putative [Cryptococcus gattii WM276] Length = 627 Score = 40.5 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 60/187 (32%), Gaps = 33/187 (17%) Query: 68 ILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSI------------LIDTRKPVLL 113 IL GP G GK+ LA + + S + S + + + R +++ Sbjct: 181 ILWGPPGCGKTTLARLIAKSSGADFKELSATSSGTQDVRQVFEKAKNGLQMTGRRTVLMI 240 Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 ++I + L + L+ A T S+ V L SR V + Sbjct: 241 DEIHRFNRAQQDLLLPY---VEKGWIQLIGATTENPSFKVNGA-LLSR---CQVFTLHAH 293 Query: 174 DDDFLEKVIVKM---FADRQIFI--DKKLAAYIVQRMERS-------LVFAEKLVDKMDN 221 + L+ ++ ++ + +L ++ + L A + MD Sbjct: 294 SPESLQIILRNAVQTISESEPIPYHPPELIPFLADVADGDARQALNGLELALRTCQTMDE 353 Query: 222 LALSRGM 228 A + Sbjct: 354 AARAEKS 360 >gi|315222482|ref|ZP_07864380.1| recombination factor protein RarA [Streptococcus anginosus F0211] gi|315188450|gb|EFU22167.1| recombination factor protein RarA [Streptococcus anginosus F0211] Length = 423 Score = 40.5 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 30/197 (15%), Positives = 64/197 (32%), Gaps = 31/197 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST---------RFSNIAKSLDSILIDTRKPVLLEDID 117 +IL GP G GK+ +A+ + ++ + + + +LL++I Sbjct: 42 MILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRLQEIAEEAKFSGGLMLLLDEIH 101 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 LD + ++M T + P + SR + ++ +D Sbjct: 102 RLDKTKQDFL----LPLLENGLIIMIGATTENPFFSVTPAIRSR---VQIFELEPLTNDD 154 Query: 178 LEKVIVKMFAD--RQ----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG---- 227 +++ I D R + +D +I + +D LS Sbjct: 155 IKQAIQTALTDTERGFDFPVQLDDDALDFITTSTN---GDLRSAFNSLDLAVLSTKEDTE 211 Query: 228 --MGITRSLAAEVLKET 242 IT + L+++ Sbjct: 212 GVRHITLDIMENSLQKS 228 >gi|303388197|ref|XP_003072333.1| replication factor C large subunit [Encephalitozoon intestinalis ATCC 50506] gi|303301472|gb|ADM10973.1| replication factor C large subunit [Encephalitozoon intestinalis ATCC 50506] Length = 383 Score = 40.5 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 70/184 (38%), Gaps = 40/184 (21%) Query: 51 QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS-------- 102 A++ + +P ++++L GPSG+GK+ LA + S A + Sbjct: 27 DALKWLKDYPE-HGKILLLRGPSGTGKTSLAYVLSSALGFDLVEFNADNDPDWMDRMLNS 85 Query: 103 --ILIDTRKPVLLEDIDLLDFNDTQLFHIIN---SIHQYD--SSLLMTARTFPVSWGVCL 155 I+ + +L+++ID F +N I L+MT+ CL Sbjct: 86 NRIINGRKNIILVDEIDGNPF--------LNVDKLISSPKLVCPLVMTSNEM------CL 131 Query: 156 PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215 D V+I P + + + I K+ ++ I I+ + + Q S + Sbjct: 132 KD-------VYTVEIQRPGFEEVRRGIEKICKEQGISIENSI---LSQMASESGGDLRTI 181 Query: 216 VDKM 219 ++ + Sbjct: 182 INHL 185 >gi|251771176|gb|EES51758.1| IstB domain protein ATP-binding protein [Leptospirillum ferrodiazotrophum] Length = 251 Score = 40.5 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 20/111 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDTR 108 +++ GP+G GK+ LA + F + SL+ +L + Sbjct: 103 ILIAGPTGVGKTHLACALGQAACRQGFLTLFFSLNRLLEKMALARAQGRYLSLLKKLTAA 162 Query: 109 KPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL--LMTARTFPVSWGVCLPD 157 ++L+D L QL I + + SL ++T + +W LPD Sbjct: 163 SVIVLDDFGLRALTPLQLQDIYDLVDGRVESLSTIVTTQLPVENWREILPD 213 >gi|255732673|ref|XP_002551260.1| vacuolar protein sorting-associated protein VPS4 [Candida tropicalis MYA-3404] gi|240131546|gb|EER31106.1| vacuolar protein sorting-associated protein VPS4 [Candida tropicalis MYA-3404] Length = 432 Score = 40.5 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 23/38 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P+ ++L GP G+GKS LA + ++ ST FS + L Sbjct: 160 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 197 >gi|238898002|ref|YP_002923682.1| ATPase, chaperone subunit of serine protease [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465760|gb|ACQ67534.1| ATPase, chaperone subunit of serine protease [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 436 Score = 40.5 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 19/104 (18%) Query: 29 FFSFPRCLGISRDDLLVH--SA---IEQAV-----RLIDSWPSWPS---RVVILVGPSGS 75 P + DD ++ +A + AV RL S P ++L+GP+GS Sbjct: 75 ALPTPHQIRAHLDDYVIGQEAAKKVLSVAVYNHYKRLSHSIPDGVELGKSNILLIGPTGS 134 Query: 76 GKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 GK+ LA + RF N+ ++ + T + ED++ + Sbjct: 135 GKTLLAETLA------RFLNVPFTIADATVLTEAGYVGEDVENI 172 >gi|241955735|ref|XP_002420588.1| AAA ATPase involved in endosome to vacuole transport, putative; vacuolar protein sorting-associated protein, putative; vacuolar protein-targeting protein, putative [Candida dubliniensis CD36] gi|223643930|emb|CAX41667.1| AAA ATPase involved in endosome to vacuole transport, putative [Candida dubliniensis CD36] Length = 437 Score = 40.5 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 23/38 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P+ ++L GP G+GKS LA + ++ ST FS + L Sbjct: 165 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 202 >gi|219129570|ref|XP_002184958.1| vacuolar protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217403453|gb|EEC43405.1| vacuolar protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 422 Score = 40.5 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 23/38 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P + ++L GP G+GKS LA + ++ ST FS + L Sbjct: 156 PFKGILLYGPPGTGKSYLAKAVATEADSTFFSVSSADL 193 >gi|190348793|gb|EDK41321.2| hypothetical protein PGUG_05419 [Meyerozyma guilliermondii ATCC 6260] Length = 432 Score = 40.5 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 23/38 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P+ ++L GP G+GKS LA + ++ ST FS + L Sbjct: 161 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 198 >gi|153002581|ref|YP_001368262.1| sporulation domain-containing protein [Shewanella baltica OS185] gi|151367199|gb|ABS10199.1| Sporulation domain protein [Shewanella baltica OS185] Length = 483 Score = 40.5 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 39/227 (17%), Positives = 81/227 (35%), Gaps = 42/227 (18%) Query: 47 SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSC----LANIWSDKSRSTRFSNIAKSLDS 102 + E ++ + S+ ++++L G SGSGK+ LA + + + + + Sbjct: 10 PSQEALIQRMHHVASYSDQLLVLSGVSGSGKTTLVTGLATDFDESNAAFVICPMHADNAE 69 Query: 103 I-----LIDTRKPVLLEDIDLLD----------------FNDTQLF--HII------NSI 133 I + P+ +DI L D +D L + N I Sbjct: 70 IRRKILVQLISSPIFDDDIPLADTLLRLASTQTKPLHIIIDDAHLLPKALWAECIILNQI 129 Query: 134 HQYDSSLLMTARTFPVSWGVCLPDLCSRL-KAATVVKISL---PDDDFLEKVIVKMFADR 189 ++ +T P LP L +L + + I P+ + L + +++ Sbjct: 130 QCAGKNIAVTLTVPPAFLADLLPQLPEQLRRQILPISIEPLTMPEREALYQTLLRYSEQN 189 Query: 190 QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236 + + ++E+ +++V+ +D AL G T SL Sbjct: 190 PFTPREIVR----SQLEKQTGTPQEVVNLLDK-ALHSGPEKTSSLVK 231 >gi|121608726|ref|YP_996533.1| recombination factor protein RarA [Verminephrobacter eiseniae EF01-2] gi|121553366|gb|ABM57515.1| Recombination protein MgsA [Verminephrobacter eiseniae EF01-2] Length = 452 Score = 40.5 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 61/172 (35%), Gaps = 20/172 (11%) Query: 68 ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLF 127 IL GP G GK+ +A + +D + S A I D L T +F Sbjct: 54 ILWGPPGVGKTTIARLMADAFDAQFISISAVLGGVKDIRAAVERAEAARDGLMQQRTIVF 113 Query: 128 ----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 H N + + A T S+ V L SR ATV + Sbjct: 114 VDEVHRFNKSQQDAFLPHVESGLFTFIGATTENPSFEVNSA-LLSR---ATVYVLQPLSA 169 Query: 176 DFLEKVIVKMFADRQI-FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 L++++ A + I+ +V + A +L++ ++ LA++ Sbjct: 170 QDLQQIVALAQAQHALPAIEDAAVERLVAYAD---GDARRLLNTLETLAMAA 218 >gi|50290195|ref|XP_447529.1| hypothetical protein [Candida glabrata CBS 138] gi|49526839|emb|CAG60466.1| unnamed protein product [Candida glabrata] Length = 432 Score = 40.5 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 23/38 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P+ ++L GP G+GKS LA + ++ ST FS + L Sbjct: 161 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 198 >gi|50555822|ref|XP_505319.1| YALI0F12155p [Yarrowia lipolytica] gi|49651189|emb|CAG78126.1| YALI0F12155p [Yarrowia lipolytica] Length = 814 Score = 40.5 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 64/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + +++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 250 PPKGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 309 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + + +++ A P S Sbjct: 310 SPAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARANIVVIAATNRPNSID-- 367 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + V I +PD +++ + + + + Sbjct: 368 -PALR-RFGRFDREVDIGIPDPTGRLEIL--RIHTKNMKLGDDV 407 >gi|146277464|ref|YP_001167623.1| ATPase central domain-containing protein [Rhodobacter sphaeroides ATCC 17025] gi|145555705|gb|ABP70318.1| AAA ATPase, central domain protein [Rhodobacter sphaeroides ATCC 17025] Length = 715 Score = 40.5 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 35/197 (17%), Positives = 60/197 (30%), Gaps = 55/197 (27%) Query: 46 HSAIEQAVRLIDSWPSWPS---------RVVILVGPSGSGKSCLANI------------- 83 A++ A RL+ W R ++L GP G+GK+ LA Sbjct: 294 GEALKAARRLVADLGLWQEKKLGWNELCRSLLLFGPPGTGKTWLARAMGNSADVGFVAAS 353 Query: 84 ---W-SDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIIN-------- 131 W + + + KS + +E+ID + H N Sbjct: 354 FAQWQAAGHLGDMLAAMRKSFADARRQAPSILFIEEIDAVGSRLDSDRHASNYRHQVIAG 413 Query: 132 -------SIHQYDSSLLMTA----RTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 + ++ R P DL V++ LPD+ L Sbjct: 414 FLEAMDSLAREEGVIVVGACNYPERIDPAVLRAGRFDLK--------VEVPLPDEAILLG 465 Query: 181 VIVKMFADRQIFIDKKL 197 ++++ R F D +L Sbjct: 466 ILLRHL--RGTFTDTEL 480 >gi|117922324|ref|YP_871516.1| sporulation domain-containing protein [Shewanella sp. ANA-3] gi|117614656|gb|ABK50110.1| Sporulation domain protein [Shewanella sp. ANA-3] Length = 471 Score = 40.5 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 62/178 (34%), Gaps = 44/178 (24%) Query: 47 SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS---DKSRSTRF---------- 93 + E V + S+ ++++LVG GSGK+ L + D+S + Sbjct: 10 PSQEALVERLHHVASYSDQLLVLVGAHGSGKTTLLTALATDFDESNAALVICPMHADNAE 69 Query: 94 ------------------SNIAKSLDSILIDTRKP--VLLEDIDLLDFNDTQLFH---II 130 ++A+++ + KP ++++D LL +L+ I+ Sbjct: 70 IRRKILVQLVSSPIFDDEISLAETILRVAPKQSKPLHIIIDDAHLLS---KELWAECIIL 126 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDL-CSRLKAATVVKISLPD----DDFLEKVIV 183 N + + +T P LP L S + V I + + ++ Sbjct: 127 NQVQCAGQRIAVTLAVPPAFLADLLPQLPESLRRQILPVSIDPLSLPEREALYQTLLR 184 >gi|67483758|ref|XP_657099.1| 26S protease regulatory subunit [Entamoeba histolytica HM-1:IMSS] gi|56474352|gb|EAL51726.1| 26S protease regulatory subunit, putative [Entamoeba histolytica HM-1:IMSS] Length = 422 Score = 40.5 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 25/48 (52%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 V+L GP G+GK+ +A + +++ST A L S I ++ E Sbjct: 206 VLLYGPPGTGKTLMARACAAQTKSTFLKLAAPQLVSSSIGDGSRIIRE 253 >gi|68470534|ref|XP_720771.1| potential vacuolar sorting ATPase [Candida albicans SC5314] gi|46442656|gb|EAL01944.1| potential vacuolar sorting ATPase [Candida albicans SC5314] gi|238882705|gb|EEQ46343.1| vacuolar protein sorting-associated protein VPS4 [Candida albicans WO-1] Length = 439 Score = 40.5 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 23/38 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P+ ++L GP G+GKS LA + ++ ST FS + L Sbjct: 167 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 204 >gi|68470797|ref|XP_720644.1| potential vacuolar sorting ATPase [Candida albicans SC5314] gi|46442522|gb|EAL01811.1| potential vacuolar sorting ATPase [Candida albicans SC5314] Length = 439 Score = 40.5 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 23/38 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P+ ++L GP G+GKS LA + ++ ST FS + L Sbjct: 167 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 204 >gi|313677223|ref|YP_004055219.1| ATPase AAA [Marivirga tractuosa DSM 4126] gi|312943921|gb|ADR23111.1| AAA ATPase central domain protein [Marivirga tractuosa DSM 4126] Length = 425 Score = 40.5 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 51/128 (39%), Gaps = 18/128 (14%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDTRKP----VLLED 115 +I GP G GK+ +ANI +++ ++ + S K + ++ + + +++ Sbjct: 44 PSMIFWGPPGVGKTTIANIIANQVKAPFQTLSAISAGVKDVREVIQRASRSGKIILFIDE 103 Query: 116 IDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 I + + L + L+ A T S+ V L SR V + + Sbjct: 104 IHRFNKSQQDALL----GAVEKGVITLIGATTENPSFEVNSA-LLSR---CQVYTLKALE 155 Query: 175 DDFLEKVI 182 + L+ ++ Sbjct: 156 LEDLKGLL 163 >gi|238023325|ref|YP_002907558.1| hypothetical protein bglu_2p0410 [Burkholderia glumae BGR1] gi|237880378|gb|ACR32708.1| Hypothetical protein bglu_2p0410 [Burkholderia glumae BGR1] Length = 1480 Score = 40.5 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 1/96 (1%) Query: 42 DLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLD 101 +LL V + W +R +++VG +GSGKS L + Sbjct: 304 NLLNALRNAARVVRAEHWERLETRALLVVGDAGSGKSHLLADACSHQIENGRPAVMVLGG 363 Query: 102 SILIDTRKPVLLEDIDLL-DFNDTQLFHIINSIHQY 136 + +L D+DL Q +N+ + Sbjct: 364 KLPDAEPWGEILRDLDLPRHLQVKQFLGALNAAGEA 399 >gi|295674557|ref|XP_002797824.1| ribosome biogenesis ATPase RIX7 [Paracoccidioides brasiliensis Pb01] gi|226280474|gb|EEH36040.1| ribosome biogenesis ATPase RIX7 [Paracoccidioides brasiliensis Pb01] Length = 746 Score = 40.5 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 23/46 (50%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 V+L GP G GK+ LA +++SR+ S L + + + + Sbjct: 522 VLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKFVGESERAV 567 Score = 37.8 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 27/57 (47%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P R V+L GP G GK+ +AN ++ + + A S+ S + + L E + Sbjct: 240 PPRGVLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIVSGMSGESEKALREHFEEA 296 >gi|225684013|gb|EEH22297.1| katanin p60 ATPase-containing subunit [Paracoccidioides brasiliensis Pb03] Length = 854 Score = 40.5 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 19/40 (47%), Positives = 27/40 (67%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P+R ++L GP G+GK+ LA + +S+ST FS A SL S Sbjct: 598 PARGMLLFGPPGTGKTMLARAVATESQSTFFSVSASSLTS 637 >gi|206589175|emb|CAQ36137.1| isrso6-transposase orfb protein [Ralstonia solanacearum MolK2] Length = 1186 Score = 40.5 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 47/130 (36%), Gaps = 30/130 (23%) Query: 51 QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110 ++ I+ + V+L+GPSG GK+ +A+ + ++ + +++ Sbjct: 989 ASLAFIERAEN-----VVLLGPSGVGKTHIASALAYRATQAGIKTRFITAADLMMQLATA 1043 Query: 111 -------------------VLLEDIDLLDF--NDTQLFHIINSI--HQYDSSLLMTARTF 147 +++++I L F + LF N + ++++T+ Sbjct: 1044 RQQNRLREFFNRAVIGPRLLVIDEIGYLPFGREEADLF--FNVVAKRYERGAIVLTSNLP 1101 Query: 148 PVSWGVCLPD 157 W D Sbjct: 1102 FTQWATAFAD 1111 >gi|292627082|ref|XP_690329.4| PREDICTED: fidgetin [Danio rerio] Length = 684 Score = 40.5 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 62/166 (37%), Gaps = 29/166 (17%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + ++L GP G GK+ LA S + ++ + +L S L + +L Sbjct: 457 PPKTILLFGPQGGGKTTLARSLSSQIGASFYRLSCATLASKLKGEAEQLLLTLFSVATAR 516 Query: 113 ---------LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC--SR 161 +E I+ + H + L+ T PDL S Sbjct: 517 QPAMVLLSEVEAIEEEGLRQQLQAQLEKIQHNQSNQFLVVCTT-------RRPDLIKDSL 569 Query: 162 LK-AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206 L+ + I LPD + V+++ A + + ++ + ++QR E Sbjct: 570 LRCFSKRYHIGLPDGNTRRHVLLQALAPQGCSLSERELSAVLQRSE 615 >gi|126454407|ref|YP_001067279.1| recombination factor protein RarA [Burkholderia pseudomallei 1106a] gi|167720767|ref|ZP_02404003.1| recombination factor protein RarA [Burkholderia pseudomallei DM98] gi|167739751|ref|ZP_02412525.1| recombination factor protein RarA [Burkholderia pseudomallei 14] gi|167825381|ref|ZP_02456852.1| recombination factor protein RarA [Burkholderia pseudomallei 9] gi|167851463|ref|ZP_02476971.1| recombination factor protein RarA [Burkholderia pseudomallei B7210] gi|167895448|ref|ZP_02482850.1| recombination factor protein RarA [Burkholderia pseudomallei 7894] gi|167903834|ref|ZP_02491039.1| recombination factor protein RarA [Burkholderia pseudomallei NCTC 13177] gi|167912100|ref|ZP_02499191.1| recombination factor protein RarA [Burkholderia pseudomallei 112] gi|167920074|ref|ZP_02507165.1| recombination factor protein RarA [Burkholderia pseudomallei BCC215] gi|217421197|ref|ZP_03452702.1| ATPase, AAA family [Burkholderia pseudomallei 576] gi|237813404|ref|YP_002897855.1| recombination factor protein RarA [Burkholderia pseudomallei MSHR346] gi|242315892|ref|ZP_04814908.1| replication-associated recombination protein A [Burkholderia pseudomallei 1106b] gi|126228049|gb|ABN91589.1| ATPase, AAA family [Burkholderia pseudomallei 1106a] gi|217396609|gb|EEC36626.1| ATPase, AAA family [Burkholderia pseudomallei 576] gi|237506600|gb|ACQ98918.1| recombination factor protein RarA [Burkholderia pseudomallei MSHR346] gi|242139131|gb|EES25533.1| replication-associated recombination protein A [Burkholderia pseudomallei 1106b] Length = 436 Score = 40.5 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 61/173 (35%), Gaps = 28/173 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA + + + A I + ++ + T L Sbjct: 50 MILWGPPGVGKTTLARLTALAFDCEFIALSAVLGGVKDIREAMEQARDTLNRTGRH-TIL 108 Query: 127 F----HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 F H N Q +LL + A T S+ V L SR A V + Sbjct: 109 FVDEIHRFNKAQQD--ALLPFVESGLVTFIGATTENPSFEVNSA-LLSR---AQVYVLKS 162 Query: 173 PDDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 +D L +++ K D + D K +V + A + ++ ++ Sbjct: 163 LAEDELRQLL-KRAQDVALGGLAFDDKAVDTLVGYAD---GDARRFLNLLEQA 211 >gi|125972706|ref|YP_001036616.1| Holliday junction DNA helicase RuvB [Clostridium thermocellum ATCC 27405] gi|256004865|ref|ZP_05429839.1| Holliday junction DNA helicase RuvB [Clostridium thermocellum DSM 2360] gi|281416894|ref|ZP_06247914.1| Holliday junction DNA helicase RuvB [Clostridium thermocellum JW20] gi|166231487|sp|A3DBU4|RUVB_CLOTH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|125712931|gb|ABN51423.1| Holliday junction DNA helicase subunit RuvB [Clostridium thermocellum ATCC 27405] gi|255991175|gb|EEU01283.1| Holliday junction DNA helicase RuvB [Clostridium thermocellum DSM 2360] gi|281408296|gb|EFB38554.1| Holliday junction DNA helicase RuvB [Clostridium thermocellum JW20] gi|316941058|gb|ADU75092.1| Holliday junction DNA helicase RuvB [Clostridium thermocellum DSM 1313] Length = 330 Score = 40.5 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 36/202 (17%), Positives = 76/202 (37%), Gaps = 29/202 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G GK+ LA I + + +++ L + D+L ++ Sbjct: 55 VLLYGPPGLGKTTLAGIIASELGVNLRITSGPAIEKPGDLAAILTNLGNFDVLFIDEI-- 112 Query: 127 FHIINSIHQ-------YDSSLLMTARTFPVSWGVCLPD---------------LCS--RL 162 H +N + D +L + P + + L D L S R Sbjct: 113 -HRLNRSVEEILYPAMEDYALDIIIGKGPSARSIRL-DLPKFTLIGATTRAGLLTSPLRD 170 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-DN 221 + + K+ L + L +++ + + I+ + A I +R + A +++ ++ D Sbjct: 171 RFGVINKLELYSVEELGQIVKRSARILNVGIEDEAAEEIARRARGTPRVANRILKRIRDF 230 Query: 222 LALSRGMGITRSLAAEVLKETQ 243 + IT+ +A L+ + Sbjct: 231 AQVKSDGFITKEIARTGLEALE 252 >gi|302143952|emb|CBI23057.3| unnamed protein product [Vitis vinifera] Length = 700 Score = 40.5 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 24/143 (16%), Positives = 46/143 (32%), Gaps = 37/143 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN----------------IAKSLDSILID 106 P + V+L GP G+GK+ LA + +S + + +A Sbjct: 115 PQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKL 174 Query: 107 TRKPVLLEDIDLLDFNDT---------------QLFHIINSIHQYDSSLLMTARTFPVSW 151 + ++++D L+ + Q +++ A P Sbjct: 175 QPAIIFIDEVDTFLGQRRTTDHEAMANMKTEFMALWDGF-TTDQNARVMVLAATNRPSEL 233 Query: 152 GVCLPDLCSRLKAATVVKISLPD 174 + L RL A +I +PD Sbjct: 234 DEAI--LR-RLPQA--FEIGIPD 251 >gi|257053680|ref|YP_003131513.1| AAA family ATPase, CDC48 subfamily [Halorhabdus utahensis DSM 12940] gi|256692443|gb|ACV12780.1| AAA family ATPase, CDC48 subfamily [Halorhabdus utahensis DSM 12940] Length = 742 Score = 40.5 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 61/163 (37%), Gaps = 33/163 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P V+L GP G+GK+ LA ++++ ++ FS + + + Sbjct: 222 PPSGVLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDATEE 281 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + ++++D + QL +++ + +++ A S Sbjct: 282 SPSIIFIDELDSIAPKREDVTGEVERRVVAQLLTMMDGLESRGQVVVIAATNRVDS---V 338 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L + ++I +PD+ E+++ R + + + Sbjct: 339 DPALRRPGRFDREIEIGVPDETGREEIL--KIHTRGMPLSDDV 379 Score = 37.1 bits (85), Expect = 2.6, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 19/32 (59%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P V+L GP G+GK+ +A ++++ + S Sbjct: 495 PPSGVLLYGPPGTGKTLMAKAVANETDANFIS 526 >gi|224157403|ref|XP_002195915.1| PREDICTED: proteasome (prosome, macropain) 26S subunit, ATPase, 6, partial [Taeniopygia guttata] Length = 165 Score = 40.5 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + ++ S+ I ++ E Sbjct: 80 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 131 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 132 ------MFNYARDHQ 140 >gi|171186425|ref|YP_001795344.1| AAA family ATPase, CDC48 subfamily protein [Thermoproteus neutrophilus V24Sta] gi|170935637|gb|ACB40898.1| AAA family ATPase, CDC48 subfamily [Thermoproteus neutrophilus V24Sta] Length = 731 Score = 40.5 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 23/163 (14%), Positives = 61/163 (37%), Gaps = 33/163 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTR-- 108 P + ++L+GP G+GK+ LA ++++ + + L I + + Sbjct: 212 PPKGILLIGPPGTGKTLLAKAVANEANAYFVAINGPEIMSKYYGESEARLREIFEEAKKN 271 Query: 109 --KPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + + +++ A P + Sbjct: 272 APAIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLQERGQVVVIGATNRPDA---V 328 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L + + I+ PD +++ + R + + + Sbjct: 329 DPALRRPGRFDREIWINPPDFKGRYEIL--LIHTRNMPLAPDV 369 Score = 38.2 bits (88), Expect = 0.97, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 16/74 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P + ++L GP G+GK+ LA + +S + + + + Sbjct: 487 PPKGILLFGPPGTGKTLLAKAVATESGANFIAVRGPEIFSKWVGESEKMVREIFRKARMA 546 Query: 107 TRKPVLLEDIDLLD 120 + +++ID L Sbjct: 547 APAVIFIDEIDALA 560 >gi|146416793|ref|XP_001484366.1| hypothetical protein PGUG_03747 [Meyerozyma guilliermondii ATCC 6260] Length = 572 Score = 40.5 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 62/185 (33%), Gaps = 38/185 (20%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS---------LDSILIDTRK------ 109 +IL GP G GK+ LA+I + ++ A L+ I + RK Sbjct: 122 PSMILHGPPGVGKTTLASIIAKEAGYVMVELSATDATVSTIRRLLNEIRDENRKRTKLGT 181 Query: 110 -----PVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164 V +++I + + + A TF + + P + SR Sbjct: 182 PHLRVCVFIDEIHRFSKVQQDFLLPF---VEEGLFVFLGATTFNPATRLR-PAIRSR--- 234 Query: 165 ATVVKISLPDDDFLEKVIVKMF-----ADR------QIFIDKKLAAYIVQRMERSLVFAE 213 + K++ D ++ V+ K R + ++ +I+ + A Sbjct: 235 CQLFKLNELTKDEVKSVLKKAALYENVRRRIVYGKQFLSFSSEVLNHIINTCKGDARSAV 294 Query: 214 KLVDK 218 +++ Sbjct: 295 NMIEM 299 >gi|91793101|ref|YP_562752.1| recombination factor protein RarA [Shewanella denitrificans OS217] gi|91715103|gb|ABE55029.1| Recombination protein MgsA [Shewanella denitrificans OS217] Length = 443 Score = 40.5 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 37/196 (18%), Positives = 74/196 (37%), Gaps = 33/196 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 ++L GP G+GK+ LA + + + + R S ++ + I + + T Sbjct: 52 MLLWGPPGTGKTTLAELIAHYANAHVERISAVSSGVKDIRAAIEQAKAV---AQSRGQRT 108 Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N Q D +++ T L SR A V I Sbjct: 109 LLFVDEVHRFNKSQQDAFLPYIEDGTVIFVGATTENPSFELNNA---LLSR---ARVYLI 162 Query: 171 SLPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + + ++I++ D RQ+ I ++ A + + A L++ M +L Sbjct: 163 HKLTETEITEIIIQALEDTERGLGKRQLIIPPEVMAELTHVSDGDARKALNLIELMSDL- 221 Query: 224 LSRGMGITRSLAAEVL 239 ++ G + + ++V+ Sbjct: 222 VADGDAVNLEMLSQVV 237 >gi|85057871|ref|YP_456787.1| cell division protein ftsH-like protein [Aster yellows witches'-broom phytoplasma AYWB] gi|123725332|sp|Q2NIN5|FTSH_AYWBP RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|84789976|gb|ABC65708.1| cell division protein ftsH homolog [Aster yellows witches'-broom phytoplasma AYWB] Length = 676 Score = 40.5 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 22/48 (45%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 V+L GP G+GK+ LA + ++ F+ D + + + + Sbjct: 208 VLLYGPPGTGKTLLAKAVAGEAGVPFFAASGSDFDEVYVGVGASRVRD 255 >gi|68076831|ref|XP_680335.1| 26S proteasome regulatory subunit 7 [Plasmodium berghei strain ANKA] gi|56501247|emb|CAH95167.1| 26S proteasome regulatory subunit 7, putative [Plasmodium berghei] Length = 420 Score = 40.5 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ A ++++ + I L + ++ E Sbjct: 195 PPKGVLLYGPPGTGKTLTARAIANRTDACFICVIGSELVQKYVGEGARLVRE 246 >gi|70941981|ref|XP_741212.1| 26S proteasome regulatory subunit 7 [Plasmodium chabaudi chabaudi] gi|56519448|emb|CAH83988.1| 26S proteasome regulatory subunit 7, putative [Plasmodium chabaudi chabaudi] Length = 295 Score = 40.5 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ A ++++ + I L + ++ E Sbjct: 70 PPKGVLLYGPPGTGKTLTARAIANRTDACFICVIGSELVQKYVGEGARLVRE 121 >gi|39938616|ref|NP_950382.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M] gi|39721725|dbj|BAD04215.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M] Length = 674 Score = 40.5 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 22/48 (45%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 V+L GP G+GK+ LA + ++ F+ D + + + + Sbjct: 208 VLLYGPPGTGKTLLAKAVAGEAGVPFFAASGSDFDEVYVGVGASRVRD 255 >gi|83315300|ref|XP_730734.1| 26S proteasome subunit P45 [Plasmodium yoelii yoelii str. 17XNL] gi|23490548|gb|EAA22299.1| 26S proteasome subunit P45 family, putative [Plasmodium yoelii yoelii] Length = 475 Score = 40.5 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ A ++++ + I L + ++ E Sbjct: 225 PPKGVLLYGPPGTGKTLTARAIANRTDACFICVIGSELVQKYVGEGARLVRE 276 >gi|329965400|ref|ZP_08302324.1| ATPase, AAA family [Bacteroides fluxus YIT 12057] gi|328522192|gb|EGF49306.1| ATPase, AAA family [Bacteroides fluxus YIT 12057] Length = 423 Score = 40.5 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 66/174 (37%), Gaps = 34/174 (19%) Query: 67 VILVGPSGSGKSCLANIWSDK--SRSTRFSNIAKSLDSI------------LIDTRKPVL 112 IL GP G GK+ LA I ++K + S + + + + + Sbjct: 41 FILWGPPGVGKTTLAQIIANKLDTPFYTLSAVTSGVKDVRDVIERAKSNRFFSQSSPILF 100 Query: 113 LEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++I + L + + L+ A T S+ V P L SR + + Sbjct: 101 IDEIHRFSKSQQDSLL----GAVEQGTVTLIGATTENPSFEVIRP-LLSR---CQLYVLK 152 Query: 172 LPDDDFLEKVIVKM------FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 + D L++++ + +R+I +++ A + S A KL++ + Sbjct: 153 SLEKDDLQELLQRAITTDIVLKERKIELEETTAM-----LRYSGGDARKLLNIL 201 >gi|313237262|emb|CBY19901.1| unnamed protein product [Oikopleura dioica] Length = 690 Score = 40.5 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 15/75 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 PS V+ L GP G GK+ LA +++S S L ++ + + Sbjct: 461 PSGVL-LTGPPGCGKTLLAKAIANESGLNFISVKGPELLNMY--------------VGES 505 Query: 123 DTQLFHIINSIHQYD 137 + + + N Sbjct: 506 ERAVRSVFNRARSSK 520 >gi|320106653|ref|YP_004182243.1| AAA ATPase central domain-containing protein [Terriglobus saanensis SP1PR4] gi|319925174|gb|ADV82249.1| AAA ATPase central domain protein [Terriglobus saanensis SP1PR4] Length = 445 Score = 40.5 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 35/196 (17%), Positives = 73/196 (37%), Gaps = 28/196 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIA-----KSLDSILIDTRKPVLLEDIDLLDF 121 +I GP G+GK+ LA I + ++++ A K + +++D K + +L Sbjct: 60 MIFWGPPGTGKTTLAKIVARMTQASFIEFSAVMSGIKEIKQVMVDAEKAAAMGSRTILFI 119 Query: 122 NDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 ++ H N + + L+ A T S+ + L SR V + Sbjct: 120 DEI---HRFNKAQQDAFLPYVERGTLRLIGATTENPSFEINAA-LLSR---CRVYTLRGL 172 Query: 174 DDDFLEKVIVKMFAD--RQIFI-----DKKLAAYIVQRMERSLVFAEKLVDKMDNLALSR 226 + + ++ + AD R + + I +A ++ +A +R Sbjct: 173 SESEVIVLMQRALADEERGLGAMHLGTAEGSLEMIASYASGDARYALNALEMATRIASAR 232 Query: 227 G-MGITRSLAAEVLKE 241 G +T+ E L++ Sbjct: 233 GDGALTKETVGEALQQ 248 >gi|296220658|ref|XP_002756429.1| PREDICTED: 26S protease regulatory subunit S10B-like [Callithrix jacchus] Length = 442 Score = 40.5 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + ++ S+ I ++ E Sbjct: 219 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESAHLIRE-------- 270 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 271 ------MFNYARDHQ 279 >gi|238926807|ref|ZP_04658567.1| crossover junction endoribonuclease subunit B [Selenomonas flueggei ATCC 43531] gi|238885339|gb|EEQ48977.1| crossover junction endoribonuclease subunit B [Selenomonas flueggei ATCC 43531] Length = 345 Score = 40.5 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 32/183 (17%), Positives = 72/183 (39%), Gaps = 15/183 (8%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT-Q 125 V+L GP G GK+ LA I +++ + A +++ L++ D+L ++ + Sbjct: 60 VLLYGPPGLGKTTLAAIIANEMGANFRQTSAPAIERQGDLASLLTNLQEHDVLFIDEIHR 119 Query: 126 LFH-----IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 L H + +++ + +++ P + + L DL K L Sbjct: 120 LSHHVEEILYSAMEDHAIDIII--GKGPSARSIRL-DLAPFTLVGATTKTGS-----LSA 171 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + F Q ++ ++ +ER+ +++ L ++R T +A +LK Sbjct: 172 PLRDRFGI-QARLEYYTTDALLLIIERTAEILSVHIERDGALEIARRSRGTPRVANRILK 230 Query: 241 ETQ 243 + Sbjct: 231 RVR 233 >gi|229559938|sp|Q7QBW0|SPAST_ANOGA RecName: Full=Spastin Length = 778 Score = 40.5 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 29/50 (58%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P++ ++L GP G+GK+ LA + + +T FS A +L S + + ++ Sbjct: 535 PAKGLLLFGPPGNGKTLLARAVATECSATFFSISAATLTSKYVGDGEKLV 584 >gi|242012196|ref|XP_002426821.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212511028|gb|EEB14083.1| conserved hypothetical protein [Pediculus humanus corporis] Length = 502 Score = 40.5 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 22/43 (51%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109 V+LVGP G+GK+ LA + +++ F D +L+ Sbjct: 108 VLLVGPPGTGKTLLARAVAGEAKVPFFHAAGPEFDEVLVGQGA 150 >gi|169831005|ref|YP_001716987.1| vesicle-fusing ATPase [Candidatus Desulforudis audaxviator MP104C] gi|169637849|gb|ACA59355.1| Vesicle-fusing ATPase [Candidatus Desulforudis audaxviator MP104C] Length = 491 Score = 40.5 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 20/47 (42%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109 P + ++L GP G+GK+ LA ++ + + S + Sbjct: 96 PLKGILLTGPPGTGKTLLARAAANYTDAVFISASGSEFIEMYAGVGA 142 >gi|330835879|ref|YP_004410607.1| proteasome-activating nucleotidase [Metallosphaera cuprina Ar-4] gi|329568018|gb|AEB96123.1| proteasome-activating nucleotidase [Metallosphaera cuprina Ar-4] Length = 391 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + +S++ +A + V+ + Sbjct: 166 PPKGVLLYGPPGTGKTMLAKAVATESKAAFIHVVASEFAQKFVGEGARVVRD 217 >gi|327189703|gb|EGE56850.1| putative ATPase protein [Rhizobium etli CNPAF512] Length = 438 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 34/188 (18%), Positives = 69/188 (36%), Gaps = 31/188 (16%) Query: 54 RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPV 111 R+I+ S +I GP G+GK+ +A + S ++ + S I + + Sbjct: 47 RMIE---SGSLGSMIFWGPPGTGKTTVARLLSGEAGLAFEQISAIFSGVADLKKVFETA- 102 Query: 112 LLEDIDLLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPD 157 + +D T LF H N + + +L+ T Sbjct: 103 ---RLRRMDGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVILVGATTENPSFELNAA--- 156 Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKL 215 L SR A V+ D+ LE+++ + A Q + + ++ A +++ + L Sbjct: 157 LLSR---ARVLTFKSHDEQSLEELLKRAEAIEQKPLPLTEEARASLIRMADGDGRAVLTL 213 Query: 216 VDKMDNLA 223 +++ A Sbjct: 214 AEEVWRAA 221 >gi|325276869|ref|ZP_08142564.1| AFG1-family ATPase [Pseudomonas sp. TJI-51] gi|324097998|gb|EGB96149.1| AFG1-family ATPase [Pseudomonas sp. TJI-51] Length = 358 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 34/110 (30%), Gaps = 23/110 (20%) Query: 65 RVVILVGPSGSGKSCL----------------------ANIWSDKSRSTRFSNIAKSLDS 102 R + L G G GKS L A + R + + Sbjct: 65 RSLYLYGSVGRGKSWLLDGFYQAVPVEAKKRLHFHDFFARLHQGMHRHRALDDALGATLD 124 Query: 103 ILIDTRKPVLLEDIDLLDFNDTQLFH-IINSIHQYDSSLLMTARTFPVSW 151 LI + + ++ + D D L + N++ LL+T+ P Sbjct: 125 ELIGDCRVLCFDEFHVHDIGDAMLLTRLFNALFSRGVFLLVTSNYAPEGL 174 >gi|325967941|ref|YP_004244133.1| ATPase AAA [Vulcanisaeta moutnovskia 768-28] gi|323707144|gb|ADY00631.1| AAA family ATPase, possible cell division control protein cdc48 [Vulcanisaeta moutnovskia 768-28] Length = 748 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 17/114 (14%), Positives = 42/114 (36%), Gaps = 28/114 (24%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P + V+L+GP G+GK+ LA + ++ + S + + + Sbjct: 214 PPKGVLLIGPPGTGKTLLAKAVASEANAYFVSINGPEIMSKYYGESEAKLREIFEEAKKN 273 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFP 148 + +++ID + QL +++ + + +++ A P Sbjct: 274 APAIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLQERGQVIVIGATNRP 327 Score = 38.2 bits (88), Expect = 1.1, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 19/32 (59%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + ++L GP G+GK+ LA + +S + + Sbjct: 503 PPKGILLFGPPGTGKTLLAKAVATESNANFIA 534 >gi|330924950|ref|XP_003300847.1| hypothetical protein PTT_12208 [Pyrenophora teres f. teres 0-1] gi|311324808|gb|EFQ91051.1| hypothetical protein PTT_12208 [Pyrenophora teres f. teres 0-1] Length = 819 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 49/121 (40%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 254 PPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 313 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + + ++M A P S Sbjct: 314 SPAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSIDPA 373 Query: 155 L 155 L Sbjct: 374 L 374 Score = 38.6 bits (89), Expect = 0.78, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 47/144 (32%), Gaps = 45/144 (31%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 PSR V+ GP G+GK+ LA +++ + SNI D Sbjct: 528 PSRGVLFYGPPGTGKTLLAKAVANECAANFISIKGPELLSMWFGESESNIRDIFDKARAA 587 Query: 107 TRKPVLLEDIDLLDFND---------------TQLFHIINSIHQYDSSLLMTARTFPVSW 151 V L+++D + + QL ++ + + ++ A P Sbjct: 588 APCVVFLDELDSIAKSRGGSQGDAGGASDRVVNQLLTEMDGMTSKKNVFVIGATNRPEQL 647 Query: 152 G--------------VCLPDLCSR 161 V LPDL SR Sbjct: 648 DNALCRPGRLDTLVYVPLPDLASR 671 >gi|291485161|dbj|BAI86236.1| recombination factor protein RarA [Bacillus subtilis subsp. natto BEST195] Length = 421 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 29/197 (14%), Positives = 66/197 (33%), Gaps = 32/197 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKS-------RSTR--FSNIAKSLDSILIDTRKPVLLEDID 117 +IL GP G GK+ +A + + + ++ + + ++L+++ Sbjct: 41 MILYGPPGIGKTSIATAIAGSTSIAFRKLNAVINNKKDMEIVAQEAKMSGQVILILDEVH 100 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 LD + +L+ A T + P + SR + ++ D Sbjct: 101 RLDKGKQDFLLPY---LENGMIILIGATTANPYHAIN-PAIRSR---TQIFELEPLTPDL 153 Query: 178 LEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG- 229 +++ + + D R + ID + + ++ ++ LS Sbjct: 154 IKQALERALHDEHRGLGTYSVSIDDQAMEHFAHGCG---GDVRSALNALELAVLSTKESA 210 Query: 230 -----ITRSLAAEVLKE 241 IT A E L++ Sbjct: 211 DGEIHITLETAEECLQK 227 >gi|238920372|ref|YP_002933887.1| recombination factor protein RarA [Edwardsiella ictaluri 93-146] gi|238869941|gb|ACR69652.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 447 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 64/198 (32%), Gaps = 36/198 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G+GK+ LA + + + R S + + I + + T Sbjct: 53 MILWGPPGTGKTTLAELIARYGHAEVERISAVTSGIKEIREAIERA----RHNRDAGRRT 108 Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N Q D ++ T L SR A V + Sbjct: 109 ILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSA---LLSR---ARVYLL 162 Query: 171 SLPDDDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 D + +V+ + DR+ + + + + + + A ++ M ++A Sbjct: 163 KALDAQDIVQVVRQAMTDRERGYGGQDVTLPTETLDALAELVNGDARRALNTLEMMADMA 222 Query: 224 ---LSRGMGITRSLAAEV 238 +T L V Sbjct: 223 ETDAQGQRVLTLDLLRSV 240 >gi|257388390|ref|YP_003178163.1| Vesicle-fusing ATPase [Halomicrobium mukohataei DSM 12286] gi|257170697|gb|ACV48456.1| Vesicle-fusing ATPase [Halomicrobium mukohataei DSM 12286] Length = 703 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 34/200 (17%), Positives = 65/200 (32%), Gaps = 48/200 (24%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID---------------- 106 P V+L GP G+GK+ LA + +S L + Sbjct: 485 PPSGVLLYGPPGTGKTLLARAIAGESGVNFIHVNGPELLDRYVGESEESVREMFERARQT 544 Query: 107 TRKPVLLEDIDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 V L++ID + +QL ++ I + + +++ A + L Sbjct: 545 APSIVFLDEIDAVAGQRGESNEVSERVVSQLLTELDGITENPNLVVLAATNRRETLDDAL 604 Query: 156 PDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL--------------AAY 200 L R + V++ PD +++ AD+ + L Sbjct: 605 --LRPGRFE--QHVEVPNPDRAARREILAVHTADKPLGDGVDLDGLAAQTEGYSGAQIEA 660 Query: 201 IVQRMERSLVFAEKLVDKMD 220 +V+ E S+ + D +D Sbjct: 661 LVR--EASMRAIRAVADDID 678 Score = 35.9 bits (82), Expect = 4.5, Method: Composition-based stats. Identities = 20/165 (12%), Positives = 59/165 (35%), Gaps = 38/165 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRST----------------RFSNIAKSLDSILID 106 P V+L GP G+GK+ +A +++ + + ++ + + Sbjct: 228 PPSGVLLHGPPGTGKTLIARAVANEVDAYFDTISGPEIVSKYKGESEERLREAFERAEDN 287 Query: 107 TRKPVLLEDIDLLDF--NDTQ---------LFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + ++ L +++ + +++ A + L Sbjct: 288 APSILFIDEIDSIAGSRDEDADMENRVVAQLLTLMDGLEDRGRVVVIGATNRVDTIDDAL 347 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 + ++I +PD+ +++ R++ ID + Sbjct: 348 R------RGGRFDREIEIGVPDEPGRREILDVHT--REMPIDDDI 384 >gi|254489705|ref|ZP_05102901.1| ATPase, AAA family protein [Methylophaga thiooxidans DMS010] gi|224465114|gb|EEF81367.1| ATPase, AAA family protein [Methylophaga thiooxydans DMS010] Length = 441 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 29/198 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I GP G+GK+ LA + + + S + + + + + + T Sbjct: 52 MIFWGPPGTGKTTLAKLIAGYCDAEFMTISAVLAGVKEVRAAVARA---QQLQQEQGRRT 108 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + + + A T S+ + L SR A V + Sbjct: 109 MLFVDEVHRFNKSQQDAFLPYVEDGTFTFIGATTENPSFELNNA-LLSR---ARVYVLKS 164 Query: 173 PDDDFLEKVIVKM-------FADRQIFIDKKLAAYIVQRMERSLVFAEKLVD-KMDNLAL 224 + L ++I + A+R I I +L + Q + L++ +D Sbjct: 165 LETTDLRQIIDRAMSNAELGLAERGIAIADELRDQLAQTADGDGRRVLNLLEIAIDLADS 224 Query: 225 SRGMGITRSLAAEVLKET 242 + + AEVL T Sbjct: 225 KGQAKVDETDLAEVLSGT 242 >gi|218295182|ref|ZP_03496018.1| Holliday junction DNA helicase RuvB [Thermus aquaticus Y51MC23] gi|218244385|gb|EED10910.1| Holliday junction DNA helicase RuvB [Thermus aquaticus Y51MC23] Length = 323 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 31/206 (15%), Positives = 76/206 (36%), Gaps = 30/206 (14%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLL 113 P ++L GP G GK+ LA++ + + + ++ + ++ + + Sbjct: 38 PLEHLLLFGPPGLGKTTLAHVIAYELGVNIRTTSGPAIEKPGDLAAILANSLEEGDILFI 97 Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD---------------- 157 ++I L + H+ ++ + +++ + + LP Sbjct: 98 DEIHRLSRQAEE--HLYPAMEDFVMDIVIGQGPAARTVRLELPRFTLIGATTRPGLITAP 155 Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 L SR ++ ++ +E V + + I ++ A I +R ++ A++L Sbjct: 156 LRSRFGIVEHLEYYTL-EELMEGV-KRDARLLGVGITEEAAREIAKRSRGTMRIAKRLFR 213 Query: 218 KM-DNLALSRGMGITRSLAAEVLKET 242 ++ D ++ IT A E L Sbjct: 214 RVRDFAQVAGEEVITGERAKEALNAL 239 >gi|159025964|emb|CAO88754.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 614 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 24/48 (50%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 ++L GP G+GK+ LA + ++R+ S L S + + + E Sbjct: 397 ILLWGPPGTGKTLLAKAVASQARANFISINGPELLSKWVGASEQAVRE 444 Score = 36.7 bits (84), Expect = 2.6, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109 P+R V+LVGP G+GK+ A +++ + + L I K Sbjct: 127 PTRGVLLVGPPGTGKTLTARALAEELGVNYIALVGPEVISKYYGEAEQKLRGIFEKASKN 186 Query: 110 ---PVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 V +++ID + + QL +++ Q +++ A P Sbjct: 187 APCIVFIDEIDSMAPDRSKVEGEVEKRLVAQLLGLMDGFAQSQGVIVLAATNRPDHLDPA 246 Query: 155 L 155 L Sbjct: 247 L 247 >gi|149185471|ref|ZP_01863787.1| Cell division cycle protein [Erythrobacter sp. SD-21] gi|148830691|gb|EDL49126.1| Cell division cycle protein [Erythrobacter sp. SD-21] Length = 774 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 60/163 (36%), Gaps = 33/163 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + V+L GP G+GK+ LA +++S + F + + + Sbjct: 241 PPKGVLLHGPPGTGKTRLAQAVANESDAEFFTINGPEIMGSGYGESEKALREVFEQATKA 300 Query: 107 TRKPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + + +++ A P + Sbjct: 301 SPAIIFIDEIDSIAPKRDRVPGEAEKRLVAQLLTLMDGLEARSNLVVIAATNRPEAIDEA 360 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L R VV + PD+ +++ R + + K+ Sbjct: 361 LRR-PGRFDREIVVGV--PDEKGRREIL--GIHTRGMPLGDKV 398 >gi|145239089|ref|XP_001392191.1| hypothetical protein ANI_1_94074 [Aspergillus niger CBS 513.88] gi|134076694|emb|CAK45225.1| unnamed protein product [Aspergillus niger] Length = 736 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 23/46 (50%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 V+L GP G GK+ LA +++SR+ S L + + + + Sbjct: 513 VLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKFVGESERAV 558 Score = 36.3 bits (83), Expect = 4.1, Method: Composition-based stats. Identities = 11/27 (40%), Positives = 17/27 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSR 89 P R V+L GP G GK+ +AN ++ + Sbjct: 202 PPRGVLLHGPPGCGKTMIANAFAAELG 228 >gi|308801567|ref|XP_003078097.1| AAA+-type ATPase (ISS) [Ostreococcus tauri] gi|116056548|emb|CAL52837.1| AAA+-type ATPase (ISS) [Ostreococcus tauri] Length = 711 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 23/38 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P++ V+L GP G+GK+ LA + +S + + + +L Sbjct: 426 PAKGVLLYGPPGTGKTLLAKALAKESGACFINVRSSTL 463 >gi|50285721|ref|XP_445289.1| hypothetical protein [Candida glabrata CBS 138] gi|49524593|emb|CAG58195.1| unnamed protein product [Candida glabrata] Length = 771 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 54/154 (35%), Gaps = 32/154 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110 P + +++ GP G+GK+ L ++ S + S S+ S + + Sbjct: 269 PPKGILMHGPPGTGKTMLLRCVANASNAHVLSIDGPSIVSKYLGETESKLREIFNEAKKY 328 Query: 111 ----VLLEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 + +++ID + N L +++ ++ A P + Sbjct: 329 QPAIIFIDEIDSIAPNRANDDSGEVESRVVATLLTLMDGTSSSGRIAVIAATNRPNA--- 385 Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA 187 P L + ++I +PD D ++ K F Sbjct: 386 VDPALRRPGRFDQEIEIGIPDVDARFDILKKQFE 419 >gi|162606466|ref|XP_001713263.1| 26S proteasome AAA-ATPase subunit [Guillardia theta] gi|12580729|emb|CAC27047.1| 26S proteasome AAA-ATPase subunit [Guillardia theta] Length = 391 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 23/52 (44%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL G G+GK+ LA + K+++ L + ++ + Sbjct: 169 PPKGVILYGEPGTGKTLLAKAIASKTKANFIKITGSELVQKFLGEGPRLVRD 220 >gi|332158359|ref|YP_004423638.1| proteasome-activating nucleotidase [Pyrococcus sp. NA2] gi|331033822|gb|AEC51634.1| proteasome-activating nucleotidase [Pyrococcus sp. NA2] Length = 396 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 23/52 (44%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G GK+ +A + + +T + L I ++ E Sbjct: 170 PPKGVLLYGPPGCGKTLMAKALAHEVNATFIRVVGSELVRKYIGEGARLVHE 221 >gi|326519767|dbj|BAK00256.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 347 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 31/196 (15%), Positives = 61/196 (31%), Gaps = 48/196 (24%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V+L GP G+GK+ LA + + ++ ++ I ++ Sbjct: 120 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFGYARDH 179 Query: 113 ------LEDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSW 151 +++ID + L ++N + ++ A P Sbjct: 180 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDELGKVKMIMATNRPDVL 239 Query: 152 GVCLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L RL ++I LP++ +V+ A I + E Sbjct: 240 DPAL--LRPGRLD--RKIEIPLPNEQSRTEVLKIHAAG------------IAKHGEIDYE 283 Query: 211 FAEKLVDKMDNLALSR 226 KL + + L Sbjct: 284 AVVKLAEGFNGADLRN 299 >gi|293571361|ref|ZP_06682392.1| ATPase, AAA family [Enterococcus faecium E980] gi|291608577|gb|EFF37868.1| ATPase, AAA family [Enterococcus faecium E980] Length = 427 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 27/172 (15%), Positives = 66/172 (38%), Gaps = 24/172 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117 +IL GP G+GK+ +A+ + + + R N A + + +LL+++ Sbjct: 42 MILYGPPGTGKTSIASAIAGSTNYAFRMLNAATDSKKDLQVVAEEAKMSGTVILLLDEVH 101 Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 LD D L H+ + +L+ A T + P + SR + ++ + Sbjct: 102 RLDKTKQDFLLPHL-----ESGRIILIGATTENPYITIN-PAIRSR---TQIFEVKPLIE 152 Query: 176 DFLEKVIVKMFADRQIFIDKKLAAY---IVQRMERSLV-FAEKLVDKMDNLA 223 ++ + D++ + ++ + + R+ ++ ++ A Sbjct: 153 QDIQLAVEHALKDKERGLSQQAIQLDEEALLHLSRATNGDLRSALNGLELAA 204 >gi|16079807|ref|NP_390631.1| recombination factor protein RarA [Bacillus subtilis subsp. subtilis str. 168] gi|221310690|ref|ZP_03592537.1| recombination factor protein RarA [Bacillus subtilis subsp. subtilis str. 168] gi|221315014|ref|ZP_03596819.1| recombination factor protein RarA [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319935|ref|ZP_03601229.1| recombination factor protein RarA [Bacillus subtilis subsp. subtilis str. JH642] gi|221324216|ref|ZP_03605510.1| recombination factor protein RarA [Bacillus subtilis subsp. subtilis str. SMY] gi|81555984|sp|O34528|YRVN_BACSU RecName: Full=Uncharacterized AAA domain-containing protein YrvN gi|2635199|emb|CAB14695.1| putative helicase associated protein (ATPase, AAA family) [Bacillus subtilis subsp. subtilis str. 168] Length = 421 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 28/197 (14%), Positives = 66/197 (33%), Gaps = 32/197 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKS-------RSTR--FSNIAKSLDSILIDTRKPVLLEDID 117 +IL GP G GK+ +A + + + ++ + + ++L+++ Sbjct: 41 MILYGPPGIGKTSIATAIAGSTSIAFRKLNAVINNKKDMEIVAQEAKMSGQVILILDEVH 100 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 LD + +L+ A T + P + SR + ++ + Sbjct: 101 RLDKGKQDFLLPY---LENGMIILIGATTANPYHAIN-PAIRSR---TQIFELEPLTPEL 153 Query: 178 LEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG- 229 +++ + + D R + ID + + ++ ++ LS Sbjct: 154 IKQALERALHDEHRGLGTYSVSIDDQAMEHFAHGCG---GDVRSALNALELAVLSTKESA 210 Query: 230 -----ITRSLAAEVLKE 241 IT A E L++ Sbjct: 211 DGEIHITLETAEECLQK 227 >gi|225717030|gb|ACO14361.1| 26S protease regulatory subunit S10B [Esox lucius] Length = 389 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + ++ S+ I ++ E Sbjct: 166 PPKGCLLYGPPGTGKTLLARAVASQMDCNFLKVVSSSIVDKYIGESARLIRE-------- 217 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 218 ------MFNYARDHQ 226 >gi|222102324|ref|YP_002546914.1| IstB-like ATP-binding protein [Agrobacterium radiobacter K84] gi|221728441|gb|ACM31450.1| IstB-like ATP-binding protein [Agrobacterium radiobacter K84] Length = 244 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 22/110 (20%) Query: 64 SRVVILVGPSGSGKSCLANIWSD-------KSRSTRFSNIAKSLDSILI---DTRKPVLL 113 R V+LVG +G+GKS LA + + R ++ L++ R L Sbjct: 98 QRNVVLVGGTGTGKSHLAIAIARALIRNSTRGRFFNVVDLVNRLETETRNGKQGRTADYL 157 Query: 114 EDIDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 +D + ++ LFH+I+ +++ +S+++T W Sbjct: 158 TRLDFIILDELGYLPFAQAGGQLLFHLISRLYER-TSIIVTTNLAFGEWP 206 >gi|187778349|ref|ZP_02994822.1| hypothetical protein CLOSPO_01941 [Clostridium sporogenes ATCC 15579] gi|187771974|gb|EDU35776.1| hypothetical protein CLOSPO_01941 [Clostridium sporogenes ATCC 15579] Length = 342 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 3/70 (4%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+ GP G GK+ LANI +++ +++ L D D+L ++ Sbjct: 55 VLFYGPPGLGKTTLANIIANEMTGNLKVTSGPAIEKAGDLAAILTSLTDYDVLFIDEI-- 112 Query: 127 FHIINSIHQY 136 H +N + Sbjct: 113 -HRLNRSIEE 121 >gi|160885966|ref|ZP_02066969.1| hypothetical protein BACOVA_03971 [Bacteroides ovatus ATCC 8483] gi|156108779|gb|EDO10524.1| hypothetical protein BACOVA_03971 [Bacteroides ovatus ATCC 8483] Length = 423 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 66/174 (37%), Gaps = 34/174 (19%) Query: 67 VILVGPSGSGKSCLANIWSDK--SRSTRFSNIAKSLDSI------------LIDTRKPVL 112 IL GP G GK+ LA I ++K + S + + + + + Sbjct: 41 FILWGPPGVGKTTLAQIIANKLETPFYTLSAVTSGVKDVREVIDRAKSNRFFSQSSPILF 100 Query: 113 LEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++I + L + + L+ A T S+ V P L SR + + Sbjct: 101 IDEIHRFSKSQQDSLL----GAVENGTVTLIGATTENPSFEVIRP-LLSR---CQLYVLK 152 Query: 172 LPDDDFLEKVIVKM------FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 + + L++++ + +R+I + + A + R S A KL++ + Sbjct: 153 SLEKEDLQELLQRAITTDAILKERKIELKETTA---MLRF--SGGDARKLLNIL 201 >gi|15221721|ref|NP_173839.1| AAA-type ATPase family protein [Arabidopsis thaliana] gi|2829884|gb|AAC00592.1| Hypothetical protein [Arabidopsis thaliana] gi|332192391|gb|AEE30512.1| AAA-type ATPase-like protein [Arabidopsis thaliana] Length = 525 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 59/174 (33%), Gaps = 25/174 (14%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN-- 122 ++ GP G+GK+ +A + S+ +E L+ Sbjct: 138 PSIVFWGPPGTGKTSIAKSLINSSKDPSLYRFVSLSAVTSGVKDVRDAVESAKRLNLEGR 197 Query: 123 -DTQLF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 T LF H N + + S L + A T S+ + P L SR V+ Sbjct: 198 KRTVLFMDEVHRFNKSQQDTFLPVIEDGSILFIGATTENPSFHLITP-LLSR---CRVLT 253 Query: 170 ISLPDDDFLEKVIVKMFAD--RQI----FIDKKLAAYIVQRMERSLVFAEKLVD 217 ++ + +E ++ + D R + +D + ++ + A ++ Sbjct: 254 LNPLKPNHVETLLRRAVDDSERGLPNSVEVDDSVIEFLANNCDGDARVALNALE 307 >gi|297826199|ref|XP_002880982.1| hypothetical protein ARALYDRAFT_481753 [Arabidopsis lyrata subsp. lyrata] gi|297326821|gb|EFH57241.1| hypothetical protein ARALYDRAFT_481753 [Arabidopsis lyrata subsp. lyrata] Length = 435 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 22/38 (57%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P R +L GP G+GKS LA + ++ ST FS + L Sbjct: 164 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDL 201 >gi|262373850|ref|ZP_06067128.1| conserved hypothetical protein [Acinetobacter junii SH205] gi|262311603|gb|EEY92689.1| conserved hypothetical protein [Acinetobacter junii SH205] Length = 424 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 71/192 (36%), Gaps = 34/192 (17%) Query: 49 IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAK-----SLDSI 103 ++ID +I GP G GK+ +A + + S A L + Sbjct: 30 NAPLRQMIDQ---GHLPSIIFWGPPGVGKTTIALLLAQAVDRPFISLSALNTGVKELREV 86 Query: 104 LIDTRKP----VLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC 159 + ++ V +++I + + ++N++ + L+ A T S+ V L Sbjct: 87 IAESGDLLTPVVFIDEIHRFNKSQQD--ALLNAV-EKGKITLIGATTENPSFEVNSA-LL 142 Query: 160 SRLKAATVVKISLPDDDFLEKVI------VKMFADRQIFID--KKLAAYIVQRMERSLVF 211 SR V ++ D D ++ +I K +R I ++ L + Sbjct: 143 SR---CQVYTLNSLDADAIQTLINKAIQSDKFLKERFIQVEEYDALIQFAA-------GD 192 Query: 212 AEKLVDKMDNLA 223 A K ++ +D +A Sbjct: 193 ARKALNLIDLIA 204 >gi|325981072|ref|YP_004293474.1| IstB domain-containing protein ATP-binding protein [Nitrosomonas sp. AL212] gi|325981300|ref|YP_004293702.1| IstB domain-containing protein ATP-binding protein [Nitrosomonas sp. AL212] gi|325982148|ref|YP_004294550.1| IstB domain-containing protein ATP-binding protein [Nitrosomonas sp. AL212] gi|325982571|ref|YP_004294973.1| IstB domain-containing protein ATP-binding protein [Nitrosomonas sp. AL212] gi|325983040|ref|YP_004295442.1| IstB domain-containing protein ATP-binding protein [Nitrosomonas sp. AL212] gi|325983211|ref|YP_004295613.1| IstB domain-containing protein ATP-binding protein [Nitrosomonas sp. AL212] gi|325983684|ref|YP_004296086.1| IstB domain-containing protein ATP-binding protein [Nitrosomonas sp. AL212] gi|325530591|gb|ADZ25312.1| IstB domain protein ATP-binding protein [Nitrosomonas sp. AL212] gi|325530819|gb|ADZ25540.1| IstB domain protein ATP-binding protein [Nitrosomonas sp. AL212] gi|325531667|gb|ADZ26388.1| IstB domain protein ATP-binding protein [Nitrosomonas sp. AL212] gi|325532090|gb|ADZ26811.1| IstB domain protein ATP-binding protein [Nitrosomonas sp. AL212] gi|325532559|gb|ADZ27280.1| IstB domain protein ATP-binding protein [Nitrosomonas sp. AL212] gi|325532730|gb|ADZ27451.1| IstB domain protein ATP-binding protein [Nitrosomonas sp. AL212] gi|325533203|gb|ADZ27924.1| IstB domain protein ATP-binding protein [Nitrosomonas sp. AL212] Length = 260 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 44/128 (34%), Gaps = 30/128 (23%) Query: 53 VRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-- 110 + I+ + ++L+GPSG GKS LA + + + +++ Sbjct: 95 LAFIERTEN-----IVLLGPSGVGKSHLAIALAYSAIMRGIKVRFITAADLMLQLATAKK 149 Query: 111 -----------------VLLEDIDLLDF--NDTQLFHIINSI--HQYDSSLLMTARTFPV 149 +++++I L F + LF N I S+++T+ Sbjct: 150 QGRLDTYLKRSVLSPKLLVIDEIGYLPFGREEANLF--FNVIAKRYEQGSVIVTSNLPFS 207 Query: 150 SWGVCLPD 157 W D Sbjct: 208 QWSTAFAD 215 >gi|229829131|ref|ZP_04455200.1| hypothetical protein GCWU000342_01216 [Shuttleworthia satelles DSM 14600] gi|229792294|gb|EEP28408.1| hypothetical protein GCWU000342_01216 [Shuttleworthia satelles DSM 14600] Length = 334 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 36/202 (17%), Positives = 73/202 (36%), Gaps = 29/202 (14%) Query: 67 VILVGPSGSGKSCLANIWSDK--------SRSTRFSNIAKSLDSILIDTRKPVLLEDIDL 118 V+L GP G GK+ LA I S++ S + + + +++I Sbjct: 56 VLLYGPPGLGKTTLAGIISNEMGVNVKITSGPAIAKPGEMAAILSGLGEGDILFVDEIHR 115 Query: 119 LDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD----------------LCSRL 162 L+ ++ + ++ Y +++ S + LP L R Sbjct: 116 LNRQVEEV--LYPAMEDYAIDIMIGKGQSARSIRLDLPHFTLVGATTRAGLLSAPLRDRF 173 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-DN 221 ++ P + L +I + ID++ A + +R + A +L+ ++ D Sbjct: 174 GIIHHLEFYTPQE--LSVIIRHSADKLGVTIDREGAYEMARRSRGTPRLANRLLKRVRDY 231 Query: 222 LALSRGMGITRSLAAEVLKETQ 243 + ITR +A E L + Sbjct: 232 AEVEYEGKITREVAGEALDLLE 253 >gi|223646692|gb|ACN10104.1| 26S protease regulatory subunit 4 [Salmo salar] gi|223672541|gb|ACN12452.1| 26S protease regulatory subunit 4 [Salmo salar] Length = 440 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 28/208 (13%), Positives = 66/208 (31%), Gaps = 49/208 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + VIL G G+GK+ LA ++++ +T + L + ++ Sbjct: 218 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEH 277 Query: 113 ------LEDIDLLDFN------------DTQLFHIINS-----IHQYDSSLLMTARTFPV 149 +++ID + L + N ++ T R + Sbjct: 278 APSIVFIDEIDAIGTKRYDSNFGGEREIQRTLLELFNQLDGFDFRGDVKVIMATNRIETL 337 Query: 150 SWGVCLP---DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA--AYIVQR 204 + P D ++ LPD+ ++ + + + + I+ + Sbjct: 338 DPALIRPGGIDRK--------IEFPLPDEKTKRRIFNIHTSR--MTVADDVTLDDLILAK 387 Query: 205 MERSLVFAEKLVDKMDNLALSRGM-GIT 231 + S + + + +AL +T Sbjct: 388 DDLSGADIKAICTEAGLMALRERRMKVT 415 >gi|224101003|ref|XP_002334315.1| predicted protein [Populus trichocarpa] gi|222871041|gb|EEF08172.1| predicted protein [Populus trichocarpa] Length = 245 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 22/38 (57%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P R +L GP G+GKS LA + ++ ST FS + L Sbjct: 164 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDL 201 >gi|254167175|ref|ZP_04874028.1| 26S proteasome subunit P45 family [Aciduliprofundum boonei T469] gi|197624031|gb|EDY36593.1| 26S proteasome subunit P45 family [Aciduliprofundum boonei T469] Length = 394 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P + V+L GP G+GK+ LA + + +T + L I ++ E DL Sbjct: 171 PPKGVLLAGPPGTGKTLLAKAVAHHTHATFIRTVGSELVRKYIGEGAKLVRELFDLA 227 >gi|189199666|ref|XP_001936170.1| cell division cycle protein 48 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187983269|gb|EDU48757.1| cell division cycle protein 48 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 818 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 49/121 (40%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 253 PPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 312 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + + ++M A P S Sbjct: 313 SPAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSIDPA 372 Query: 155 L 155 L Sbjct: 373 L 373 Score = 38.6 bits (89), Expect = 0.80, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 47/144 (32%), Gaps = 45/144 (31%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 PSR V+ GP G+GK+ LA +++ + SNI D Sbjct: 527 PSRGVLFYGPPGTGKTLLAKAVANECAANFISIKGPELLSMWFGESESNIRDIFDKARAA 586 Query: 107 TRKPVLLEDIDLLDFND---------------TQLFHIINSIHQYDSSLLMTARTFPVSW 151 V L+++D + + QL ++ + + ++ A P Sbjct: 587 APCVVFLDELDSIAKSRGGSQGDAGGASDRVVNQLLTEMDGMTSKKNVFVIGATNRPEQL 646 Query: 152 G--------------VCLPDLCSR 161 V LPDL SR Sbjct: 647 DNALCRPGRLDTLVYVPLPDLASR 670 >gi|164659980|ref|XP_001731114.1| hypothetical protein MGL_2113 [Malassezia globosa CBS 7966] gi|159105012|gb|EDP43900.1| hypothetical protein MGL_2113 [Malassezia globosa CBS 7966] Length = 737 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 43/124 (34%), Gaps = 29/124 (23%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRF--------------SNIAKSLDSILIDTRKPVL 112 V+L GP G GK+ LA +++SR+ S A P + Sbjct: 478 VLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESEKAVRQVFARARASSPCV 537 Query: 113 L--EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 + +++D + + D +L + + L L SR++ + Sbjct: 538 IFFDELDA-------------LVPRRDDTLSEASARVVNTLLTELDGLESRVQTYVIAAT 584 Query: 171 SLPD 174 + PD Sbjct: 585 NRPD 588 >gi|124515596|gb|EAY57106.1| putative IstB-like ATP-binding protein [Leptospirillum rubarum] Length = 261 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 46/116 (39%), Gaps = 23/116 (19%) Query: 58 SWPSWPSRVVILVGPSGSGKSCLANIW---SDKSRSTRFSNIAKSLDSIL---------- 104 W + VV L GP G GK+ LA + + A+SL + L Sbjct: 95 RWVANGDNVVFL-GPPGVGKTHLAVALGVEAIRGGYRTLFVGAQSLIASLTRFHQEGRLE 153 Query: 105 -----IDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 + K +++++I + + F +I+ ++ S+++T+ +WG Sbjct: 154 EKLKQLAQYKLLIIDEIGYIPIDQLGANLFFQLISRRYEKG-SMILTSNQSYANWG 208 >gi|124006089|ref|ZP_01690925.1| holliday junction DNA helicase RuvB [Microscilla marina ATCC 23134] gi|123988266|gb|EAY27919.1| holliday junction DNA helicase RuvB [Microscilla marina ATCC 23134] Length = 345 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 38/201 (18%), Positives = 70/201 (34%), Gaps = 27/201 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G GK+ L+NI +++ + LD LE D+L ++ Sbjct: 62 VLLHGPPGLGKTTLSNIIANELGTEIKITSGPVLDKPSDLAGLLTNLETNDVLFIDEI-- 119 Query: 127 FHIINSIHQY---------DSSLLMTARTFPVSWGVCLPD------------LCSRLKA- 164 H +N I + +++ + + + L L S L+A Sbjct: 120 -HRLNPIVEEYLYSAMEDYKIDIMLDSGPSARTIQIALNPFTLIGATTRAGLLTSPLRAR 178 Query: 165 -ATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-DNL 222 ++ D D L ++ + A I+ + I R + A L+ + D Sbjct: 179 FGIKARLEYYDADLLSTIVRRSCAILGTPIEHDASYEIAFRSRGTPRIANNLLRRTRDFA 238 Query: 223 ALSRGMGITRSLAAEVLKETQ 243 + IT +A L + Sbjct: 239 QVKGDGTITLEIAKMALDALE 259 >gi|308813299|ref|XP_003083956.1| 26S proteasome regulatory complex, ATPase RPT1 (ISS) [Ostreococcus tauri] gi|116055838|emb|CAL57923.1| 26S proteasome regulatory complex, ATPase RPT1 (ISS) [Ostreococcus tauri] Length = 930 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 27/52 (51%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P R V+L GP G GK+ LA+ + ++R FS A + S + + + E Sbjct: 336 PPRGVLLHGPPGCGKTTLAHAIAQEARVPFFSIAATEIVSGMSGESEAKIRE 387 >gi|15226199|ref|NP_180328.1| SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1); ATP binding / nucleoside-triphosphatase/ nucleotide binding [Arabidopsis thaliana] gi|13605797|gb|AAK32884.1|AF367297_1 F10A12.27/F10A12.27 [Arabidopsis thaliana] gi|3860272|gb|AAC73040.1| putative ATPase [Arabidopsis thaliana] gi|20147133|gb|AAM10283.1| F10A12.27/F10A12.27 [Arabidopsis thaliana] gi|20197659|gb|AAM15184.1| putative ATPase [Arabidopsis thaliana] gi|330252925|gb|AEC08019.1| vacuolar protein-sorting-associated protein 4 [Arabidopsis thaliana] Length = 435 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 22/38 (57%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P R +L GP G+GKS LA + ++ ST FS + L Sbjct: 164 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDL 201 >gi|21593336|gb|AAM65285.1| putative ATPase [Arabidopsis thaliana] Length = 434 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 22/38 (57%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P R +L GP G+GKS LA + ++ ST FS + L Sbjct: 164 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDL 201 >gi|152973913|ref|YP_001373430.1| ATP-dependent metalloprotease FtsH [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022665|gb|ABS20435.1| ATP-dependent metalloprotease FtsH [Bacillus cytotoxicus NVH 391-98] Length = 639 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 63/197 (31%), Gaps = 45/197 (22%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ FS + + Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 257 Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + + L + ++ + +++ A P L Sbjct: 258 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANEGIIIIAATNRPDILDPAL 317 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211 L+ + + PD + E V+ R +D+ + I R Sbjct: 318 ------LRPGRFDRQITVDRPDVNGREAVLKVHA--RNKPLDEDIDLRAIATRTP-GFSG 368 Query: 212 AEKLVDKMDNLALSRGM 228 A L + ++ AL Sbjct: 369 A-DLENLLNEAALVAAR 384 >gi|314932733|ref|ZP_07840103.1| ATP-dependent metalloprotease FtsH [Staphylococcus caprae C87] gi|313654563|gb|EFS18315.1| ATP-dependent metalloprotease FtsH [Staphylococcus caprae C87] Length = 711 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 28/199 (14%), Positives = 65/199 (32%), Gaps = 47/199 (23%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ + FS + + Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260 Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + + L + ++ + + +++ A P L Sbjct: 261 IFIDEIDAVGRQRGAGVGGGHDEREQTLNQLLVEMDGFGENEGIIMIAATNRPDILDPAL 320 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY--IVQRMERSLV 210 L+ +++ PD E ++ ++ + + I QR Sbjct: 321 ------LRPGRFDRQIQVGRPDVKGREAILHVHSKNKPL---DETVDLKAISQRTP-GFS 370 Query: 211 FAEKLVDKMDNLALSRGMG 229 A L + ++ +L Sbjct: 371 GA-DLENLLNEASLIAARE 388 >gi|302337812|ref|YP_003803018.1| ATPase AAA [Spirochaeta smaragdinae DSM 11293] gi|301634997|gb|ADK80424.1| AAA ATPase central domain protein [Spirochaeta smaragdinae DSM 11293] Length = 735 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 52/137 (37%), Gaps = 21/137 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS------TRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120 +I GP G GK+ LA + + ++S S + + SI + L + +L Sbjct: 52 LIFYGPPGCGKTALARVIAGTTKSAFDTLNAVLSGVKELRQSISSAKERKELYDKRTILF 111 Query: 121 FNDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 ++ H N + + +L+ A T + V P L SR + + ++ Sbjct: 112 VDEV---HRWNKAQQDALLPWVENGTVILIGATTENPFFEVN-PALVSR---SRIFQLKP 164 Query: 173 PDDDFLEKVIVKMFADR 189 D L V + DR Sbjct: 165 LSKDDLYAVAHQALNDR 181 >gi|289423791|ref|ZP_06425586.1| cell division protease FtsH [Peptostreptococcus anaerobius 653-L] gi|289155830|gb|EFD04500.1| cell division protease FtsH [Peptostreptococcus anaerobius 653-L] Length = 645 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 43/140 (30%), Gaps = 45/140 (32%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 +LVGP G+GK+ LA + ++ FS + + Sbjct: 199 ALLVGPPGTGKTLLAKAVAGEAGVPFFSISGSEFVEMFVGMGASRVRDLFKQAKEKAPCI 258 Query: 111 VLLEDIDLLDFNDTQLF--------HIINSIH------QYD-SSLLMTARTFPVSW---- 151 V +++ID + F +N + + +++ A P S Sbjct: 259 VFIDEIDAIGKKRDGAFGGGNDEREQTLNQLLSEMDGFENGIGIVMLAATNRPDSLDKAL 318 Query: 152 ----------GVCLPDLCSR 161 V LPDL R Sbjct: 319 LRPGRFDRRIPVELPDLKGR 338 >gi|223044433|ref|ZP_03614466.1| putative ATP-dependent metallopeptidase HflB subfamily [Staphylococcus capitis SK14] gi|222442222|gb|EEE48334.1| putative ATP-dependent metallopeptidase HflB subfamily [Staphylococcus capitis SK14] Length = 711 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 28/199 (14%), Positives = 65/199 (32%), Gaps = 47/199 (23%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ + FS + + Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260 Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + + L + ++ + + +++ A P L Sbjct: 261 IFIDEIDAVGRQRGAGVGGGHDEREQTLNQLLVEMDGFGENEGIIMIAATNRPDILDPAL 320 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY--IVQRMERSLV 210 L+ +++ PD E ++ ++ + + I QR Sbjct: 321 ------LRPGRFDRQIQVGRPDVKGREAILHVHSKNKPL---DETVDLKAISQRTP-GFS 370 Query: 211 FAEKLVDKMDNLALSRGMG 229 A L + ++ +L Sbjct: 371 GA-DLENLLNEASLIAARE 388 >gi|218512792|ref|ZP_03509632.1| chromosomal replication initiation protein [Rhizobium etli 8C-3] Length = 147 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Query: 156 PDLCSRLKAATVVKISLPD-DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211 P + SRL+ +++ PD + LE + ++ A RQ ++ A ++Q + R++ Sbjct: 6 PRVRSRLQGGVAIELDAPDYEMRLEILKRRLAAARQEDPSLEIPADLLQHVARNITA 62 >gi|210134616|ref|YP_002301055.1| recombination factor protein RarA [Helicobacter pylori P12] gi|210132584|gb|ACJ07575.1| recombination factor protein [Helicobacter pylori P12] Length = 391 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 63/184 (34%), Gaps = 21/184 (11%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI----------DTRKPVLLE 114 GP G GK+ LA I + S A + + V ++ Sbjct: 38 PHAFFYGPPGVGKTSLAQIIARSLERPILSFNATDFKLEDLRLKLKNYQNTLLKPIVFID 97 Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 + L+ + I + D +L++ A T ++ + + SR + +++ + Sbjct: 98 ETHRLNKTQQEFLLPI---MEKDHALILGASTQDPNYSLSHA-IRSR---SFTFELTPLN 150 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234 L+++ K + I+ Y++ S A L++ + L+ IT Sbjct: 151 KSDLDRLCDKALTLLKKQIEPSAKTYLLNN---SAGDARALLNLL-ELSAKIEDPITLKT 206 Query: 235 AAEV 238 + Sbjct: 207 LKSL 210 >gi|195390540|ref|XP_002053926.1| GJ24151 [Drosophila virilis] gi|194152012|gb|EDW67446.1| GJ24151 [Drosophila virilis] Length = 399 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + +L GP G+GK+ LA + + + ++ ++ I ++ E Sbjct: 176 PPKGCLLYGPPGTGKTLLARAIASQLDANFLKVVSSAIVDKYIGESARLIRE 227 >gi|193215466|ref|YP_001996665.1| recombination factor protein RarA [Chloroherpeton thalassium ATCC 35110] gi|193088943|gb|ACF14218.1| AAA ATPase central domain protein [Chloroherpeton thalassium ATCC 35110] Length = 439 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 40/197 (20%), Positives = 72/197 (36%), Gaps = 25/197 (12%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA + S S A + + L++ T Sbjct: 55 PSMILWGPPGVGKTTLALLLSRNSGYEYMQISAIDSGVKEVRSVITQALQN--HKRGKKT 112 Query: 125 QLF----HIINSIHQ-------YDSSL-LMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N Q +L L+ A T S+ V +P L SR + V + Sbjct: 113 SLFIDEIHRFNKAQQDALLGAVEKGTLKLIGATTENPSFEV-IPALLSR---SVVYLLKP 168 Query: 173 PDDDFLEKVIVKMFADR----QIFIDKKLAAYIVQRMERSLVFAEKLVD-KMDNLALSRG 227 +++ + +V+ + Q I + ++ + A ++ ++ S+ Sbjct: 169 LENEDIRRVVNQALESDEILMQKTIQIEAWDFLFRLASGDARRALNTLEIAINAAEKSKK 228 Query: 228 MG--ITRSLAAEVLKET 242 IT SL + L++ Sbjct: 229 QPVLITESLLEKTLQQQ 245 >gi|158440551|gb|ABW38696.1| 26S proteasome ATPase subunit S4 [Giardia intestinalis] gi|158441601|gb|ABW38726.1| 26S proteasome ATPase subunit S4 [Giardia intestinalis] Length = 447 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 48/144 (33%), Gaps = 45/144 (31%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRS-----------TRFSNIAKSLDSILIDTRKP- 110 P R IL GPSG+GKS LA ++++ + ++S L L K Sbjct: 226 PPRSCILHGPSGTGKSLLARACANETSACYMKMAGSELIQKYSGEGPRLVRELFKAAKAN 285 Query: 111 ----VLLE----------DIDLLDFNDTQ--LFHIINSI----HQYDSSLLMT------- 143 + ++ D D + Q + ++N + ++M Sbjct: 286 QPTIIFIDEVDAVGRKRYDADSGGAREIQRTMLELLNQLDGFDRTEGVKVIMATNLIESL 345 Query: 144 ------ARTFPVSWGVCLPDLCSR 161 A V LPDL +R Sbjct: 346 DSALIRAGRIDRKIYVGLPDLTAR 369 >gi|111038318|gb|ABH03541.1| putative Werner helicase-interacting protein [Arabidopsis thaliana] Length = 524 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 59/174 (33%), Gaps = 25/174 (14%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN-- 122 ++ GP G+GK+ +A + S+ +E L+ Sbjct: 137 PSIVFWGPPGTGKTSIAKSLINSSKDPSLYRFVSLSAVTSGVKDVRDAVESAKRLNLEGR 196 Query: 123 -DTQLF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 T LF H N + + S L + A T S+ + P L SR V+ Sbjct: 197 KRTVLFMDEVHRFNKSQQDTFLPVIEDGSILFIGATTENPSFHLITP-LLSR---CRVLT 252 Query: 170 ISLPDDDFLEKVIVKMFAD--RQI----FIDKKLAAYIVQRMERSLVFAEKLVD 217 ++ + +E ++ + D R + +D + ++ + A ++ Sbjct: 253 LNPLKPNHVETLLRRAVDDSERGLPNSVEVDDSVIEFLANNCDGDARVALNALE 306 >gi|52548689|gb|AAU82538.1| ATP-dependent 26S proteasome regulatory subunit [uncultured archaeon GZfos18C8] Length = 497 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 27/57 (47%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P + V+L GP G+GK+ LA + ++ +T + L I ++ + ++ Sbjct: 273 PPKGVLLFGPPGTGKTLLAKAVATRTDATFIRVVGSELVQKYIGEGARMVRDVFEMA 329 >gi|70727499|ref|YP_254415.1| cell-division protein [Staphylococcus haemolyticus JCSC1435] gi|123748601|sp|Q4L3G8|FTSH_STAHJ RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|68448225|dbj|BAE05809.1| cell-division protein [Staphylococcus haemolyticus JCSC1435] Length = 727 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 28/199 (14%), Positives = 65/199 (32%), Gaps = 47/199 (23%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ + FS + + Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260 Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + + L + ++ + + +++ A P L Sbjct: 261 IFIDEIDAVGRQRGAGVGGGHDEREQTLNQLLVEMDGFGENEGIIMIAATNRPDILDPAL 320 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY--IVQRMERSLV 210 L+ +++ PD E ++ ++ + + I QR Sbjct: 321 ------LRPGRFDRQIQVGRPDVKGREAILHVHSKNKPL---DETVDLKAISQRTP-GFS 370 Query: 211 FAEKLVDKMDNLALSRGMG 229 A L + ++ +L Sbjct: 371 GA-DLENLLNEASLIAARE 388 >gi|113460956|ref|YP_719023.1| recombination factor protein RarA [Haemophilus somnus 129PT] gi|112822999|gb|ABI25088.1| Recombination protein MgsA [Haemophilus somnus 129PT] Length = 446 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 14/78 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSILIDTRKPVLLEDI--DLLDFN 122 +I GP G+GK+ LA I + + + R S + + I +E + L Sbjct: 53 MIFWGPPGTGKTTLAEIIAQQIHAQVERISAVTAGVKEIRES------IERAKQNRLMGQ 106 Query: 123 DTQLF----HIINSIHQY 136 T LF H N Q Sbjct: 107 QTILFVDEVHRFNKTQQD 124 >gi|323448854|gb|EGB04747.1| hypothetical protein AURANDRAFT_55007 [Aureococcus anophagefferens] Length = 409 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 23/48 (47%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 V+L GP G+GK+ LA + +T +A ++ I V+ E Sbjct: 190 VLLYGPPGTGKTLLARALASNINATFLKVVASAIVDKYIGESARVIRE 237 >gi|300362062|ref|ZP_07058239.1| ABC superfamily ATP binding cassette transporter, ABC protein [Lactobacillus gasseri JV-V03] gi|300354681|gb|EFJ70552.1| ABC superfamily ATP binding cassette transporter, ABC protein [Lactobacillus gasseri JV-V03] Length = 320 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 23/84 (27%) Query: 66 VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125 + +LVGPSGSGK+ L ++ + ++ T+ +LL+D + D++ + Sbjct: 30 IFVLVGPSGSGKTTLLKMF----------------NRLIEPTKGEILLDDKSIKDYDLRK 73 Query: 126 LFHIINSIHQYDSSLLMTARTFPV 149 L + +L TA FP Sbjct: 74 L-------REKTGYVLQTASLFPN 90 >gi|218507489|ref|ZP_03505367.1| recombination factor protein RarA [Rhizobium etli Brasil 5] Length = 250 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 33/188 (17%), Positives = 68/188 (36%), Gaps = 31/188 (16%) Query: 54 RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPV 111 R+I+ S +I GP G+GK+ +A + ++ S I + + Sbjct: 47 RMIE---SGSLGSMIFWGPPGTGKTTVARLLPGEAGLAFEHISAIFSGVADLKKVFETA- 102 Query: 112 LLEDIDLLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPD 157 + +D T LF H N + + +L+ T Sbjct: 103 ---RLRRMDGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVILVGATTENPSFELNAA--- 156 Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKL 215 L SR A V+ + D+ LE+++ + A Q + + ++ A +++ + L Sbjct: 157 LLSR---ARVLTLKSHDEQSLEELLQRAEAIEQKPLPLTEEARASLIRMADGDGRAVLTL 213 Query: 216 VDKMDNLA 223 +++ A Sbjct: 214 AEEVWRAA 221 >gi|207722035|ref|YP_002252473.1| transposition helper protein (partial sequence) [Ralstonia solanacearum MolK2] gi|206587209|emb|CAQ17793.1| putative transposition helper protein (partial sequence) [Ralstonia solanacearum MolK2] Length = 239 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 47/130 (36%), Gaps = 30/130 (23%) Query: 51 QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110 ++ I+ + V+L+GPSG GK+ +A+ + ++ + +++ Sbjct: 70 ASLAFIERAEN-----VVLLGPSGVGKTHIASALAYRATQAGIKTRFITAADLMMQLATA 124 Query: 111 -------------------VLLEDIDLLDF--NDTQLFHIINSI--HQYDSSLLMTARTF 147 +++++I L F + LF N + ++++T+ Sbjct: 125 RQQNRLREFFNRAVIGPRLLVIDEIGYLPFGREEADLF--FNVVAKRYERGAIVLTSNLP 182 Query: 148 PVSWGVCLPD 157 W D Sbjct: 183 FTQWATAFAD 192 >gi|254168911|ref|ZP_04875751.1| ATPase, AAA family protein [Aciduliprofundum boonei T469] gi|197622175|gb|EDY34750.1| ATPase, AAA family protein [Aciduliprofundum boonei T469] Length = 437 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 43/237 (18%), Positives = 77/237 (32%), Gaps = 55/237 (23%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDSW-PSWPSRV-----VILVGPSGSGKSCLANIWSDK 87 RD +V QA+ I W W +ILVG G GK+ A +++ Sbjct: 9 YRPKRLRD--IVG--NTQAINEILRWAEEWEEGKPSYKALILVGKPGCGKTTTARALANE 64 Query: 88 SRSTRFSNIAK-----------SLDSILIDT--------------RKPVLLEDIDLL--- 119 A +L + +T RK ++ ++ D L Sbjct: 65 MGWGVIELNASDVRNEEKIKQIALRGAIYETFTDDGKFISTRKGGRKLIIFDEADNLYEG 124 Query: 120 --DFNDTQLFHIINSIHQYDSSLLMTA----RTFPVSWGVCLPDLCSRLKAATVVKISLP 173 D + I+ +I +++ +WG L A VVK Sbjct: 125 VKDGDRGGKKAIVETIKASKQPIILIGNDYYSITSGTWGKVLK------SVAKVVKFRAV 178 Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 + + KV+ ++ A I ++ YI +S ++ D A++ G + Sbjct: 179 NRAQIVKVLRRICAAEGIKCQDEVLKYIA---GKSGGDLRAAIN--DLQAIAEGKKV 230 >gi|189200505|ref|XP_001936589.1| hypothetical protein PTRG_06256 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187983688|gb|EDU49176.1| hypothetical protein PTRG_06256 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 662 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 11/67 (16%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P+R ++L GP G+GK+ LA + +S+ST F+ A SL S + + ++ Sbjct: 406 PARGMLLFGPPGTGKTMLARAVATESKSTFFAISASSLTSKFLGESEKLV---------- 455 Query: 123 DTQLFHI 129 LF + Sbjct: 456 -RALFQL 461 >gi|186489957|ref|NP_175433.2| ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding [Arabidopsis thaliana] gi|332194397|gb|AEE32518.1| P-loop containing NTPase domain-containing protein [Arabidopsis thaliana] Length = 1003 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 22/40 (55%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P + ++L GP G+GK+ LA + ++ + S +L S Sbjct: 748 PCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS 787 >gi|166366513|ref|YP_001658786.1| cell division protein [Microcystis aeruginosa NIES-843] gi|166088886|dbj|BAG03594.1| cell division protein [Microcystis aeruginosa NIES-843] Length = 614 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 24/48 (50%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 ++L GP G+GK+ LA + ++R+ S L S + + + E Sbjct: 397 ILLWGPPGTGKTLLAKAVASQARANFISINGPELLSKWVGASEQAVRE 444 Score = 36.7 bits (84), Expect = 2.7, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109 P+R V+LVGP G+GK+ A +++ + + L I K Sbjct: 127 PTRGVLLVGPPGTGKTLTARALAEELGVNYIALVGPEVISKYYGEAEQKLRGIFEKASKN 186 Query: 110 ---PVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 V +++ID + + QL +++ Q +++ A P Sbjct: 187 APCIVFIDEIDSMAPDRSKVEGEVEKRLVAQLLGLMDGFAQSQGVIVLAATNRPDHLDPA 246 Query: 155 L 155 L Sbjct: 247 L 247 >gi|74002396|ref|XP_853576.1| PREDICTED: similar to proteasome 26S ATPase subunit 6 [Canis familiaris] Length = 260 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + ++ S+ I ++ E Sbjct: 166 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 217 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 218 ------MFNYARDHQ 226 >gi|46390947|dbj|BAD16461.1| transitional endoplasmic reticulum ATPase-like [Oryza sativa Japonica Group] Length = 473 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 50/144 (34%), Gaps = 43/144 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------ILIDTR 108 P + V+L GP G+GK+ LA + ++ + S +L S Sbjct: 216 PCKGVLLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASRL 275 Query: 109 KPVLL--EDIDLLDFNDTQLF-H-----IIN---------SIHQYDSSLLMTA------- 144 PV++ +++D L F H + N + L++ A Sbjct: 276 APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDGLRSKESQRILILGATNRPFDL 335 Query: 145 -----RTFPVSWGVCLPDLCSRLK 163 R P V LPD +R+K Sbjct: 336 DDAVIRRLPRRIYVDLPDAQNRMK 359 >gi|26451436|dbj|BAC42817.1| unknown protein [Arabidopsis thaliana] Length = 525 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 59/174 (33%), Gaps = 25/174 (14%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN-- 122 ++ GP G+GK+ +A + S+ +E L+ Sbjct: 138 PSIVFWGPPGTGKTSIAKSLINSSKDPSLYRFVSLSAVTSGVKDVRDAVESAKRLNLEGR 197 Query: 123 -DTQLF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 T LF H N + + S L + A T S+ + P L SR V+ Sbjct: 198 KRTVLFMDEVHRFNKSQQDTFLPVIEDGSILFIGATTENPSFHLITP-LLSR---CRVLT 253 Query: 170 ISLPDDDFLEKVIVKMFAD--RQI----FIDKKLAAYIVQRMERSLVFAEKLVD 217 ++ + +E ++ + D R + +D + ++ + A ++ Sbjct: 254 LNPLKPNHVETLLRRAVDDSERGLPNSVEVDDSVIEFLANNCDGDARVALNALE 307 >gi|70995044|ref|XP_752288.1| AAA family ATPase/60S ribosome export protein Rix7 [Aspergillus fumigatus Af293] gi|66849923|gb|EAL90250.1| AAA family ATPase/60S ribosome export protein Rix7, putative [Aspergillus fumigatus Af293] gi|159131044|gb|EDP56157.1| AAA family ATPase/60S ribosome export protein Rix7, putative [Aspergillus fumigatus A1163] Length = 784 Score = 40.5 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 23/46 (50%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 V+L GP G GK+ LA +++SR+ S L + + + + Sbjct: 561 VLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKFVGESERAV 606 Score = 37.8 bits (87), Expect = 1.5, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P R V+L GP G GK+ +AN ++ + A S+ S + + L E + Sbjct: 253 PPRGVLLHGPPGCGKTMIANAFAAELGVPFIPISAPSIVSGMSGESEKALREHFEEA 309 >gi|325971232|ref|YP_004247423.1| Holliday junction ATP-dependent DNA helicase ruvB [Spirochaeta sp. Buddy] gi|324026470|gb|ADY13229.1| Holliday junction ATP-dependent DNA helicase ruvB [Spirochaeta sp. Buddy] Length = 353 Score = 40.5 bits (94), Expect = 0.24, Method: Composition-based stats. Identities = 35/200 (17%), Positives = 69/200 (34%), Gaps = 33/200 (16%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT--------RKPVLLE 114 P L+GP G GK+ LA+I +++ + A +LD ++ Sbjct: 63 PLDHTFLIGPPGLGKTTLASIIANEMGAEIRMTSAPALDKPKDLAGILTNVTEGSVFFID 122 Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVS-WGVCLPD---------------- 157 +I L ++ +I + + + + LP Sbjct: 123 EIHRLKPALEEMLYI---AMEDFEIDWVIGQGPAARTMRIPLPKFTLVGATTKAGSVSSP 179 Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER-SLVFAEKLV 216 L SR I ++ L +I + + IDKK + R R + A +L+ Sbjct: 180 LSSRF--GITCHIEFYNEQELASIIARSAQIMDVQIDKKAIVQLA-RCSRGTPRIANRLL 236 Query: 217 DKMDNLALSRG-MGITRSLA 235 ++ + A+ G +T ++ Sbjct: 237 RRLRDFAMVMGDGTVTVAVV 256 >gi|320120442|gb|EFE27854.2| holliday junction DNA helicase RuvB [Filifactor alocis ATCC 35896] Length = 337 Score = 40.5 bits (94), Expect = 0.24, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 3/70 (4%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G GK+ L+ I +++ + +++ L D D+L ++ Sbjct: 59 VLLYGPPGLGKTTLSYIIANEMSANIKITSGPAIEKSGDLAAILTNLSDGDVLFIDEI-- 116 Query: 127 FHIINSIHQY 136 H +N + Sbjct: 117 -HRLNRTVEE 125 >gi|321312280|ref|YP_004204567.1| recombination factor protein RarA [Bacillus subtilis BSn5] gi|320018554|gb|ADV93540.1| recombination factor protein RarA [Bacillus subtilis BSn5] Length = 421 Score = 40.5 bits (94), Expect = 0.24, Method: Composition-based stats. Identities = 29/197 (14%), Positives = 66/197 (33%), Gaps = 32/197 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKS-------RSTR--FSNIAKSLDSILIDTRKPVLLEDID 117 +IL GP G GK+ +A + + + ++ + + ++L+++ Sbjct: 41 MILYGPPGIGKTSIATAIAGSTSIAFRKLNAVINNKKDMEIVAQEAKMSGQVILILDEVH 100 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 LD + +L+ A T + P + SR + ++ D Sbjct: 101 RLDKGKQDFLLPY---LENGMIILIGATTANPYHAIN-PAIRSR---TQIFELEPLTPDL 153 Query: 178 LEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG- 229 +++ + + D R + ID + + ++ ++ LS Sbjct: 154 IKQALERALHDEHRGLGTYSVSIDDQAMEHFAHGCG---GDVRSALNALELAVLSTKESA 210 Query: 230 -----ITRSLAAEVLKE 241 IT A E L++ Sbjct: 211 DGEIHITLETAEECLQK 227 >gi|194748363|ref|XP_001956616.1| GF24499 [Drosophila ananassae] gi|190623898|gb|EDV39422.1| GF24499 [Drosophila ananassae] Length = 398 Score = 40.5 bits (94), Expect = 0.24, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + +L GP G+GK+ LA + + + ++ ++ I ++ E Sbjct: 175 PPKGCLLYGPPGTGKTLLARAIASQLDANFLKVVSSAIVDKYIGESARLIRE 226 >gi|239917581|ref|YP_002957139.1| predicted ATPase [Micrococcus luteus NCTC 2665] gi|281413933|ref|ZP_06245675.1| predicted ATPase [Micrococcus luteus NCTC 2665] gi|239838788|gb|ACS30585.1| predicted ATPase [Micrococcus luteus NCTC 2665] Length = 351 Score = 40.5 bits (94), Expect = 0.24, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 66/201 (32%), Gaps = 39/201 (19%) Query: 67 VILVGPSGSGKSC-LANIWSDKSR----------STRFSNIAKSLDSILIDTRKPVLLED 115 + L G G GK+ LA+ W + ++ + V +++ Sbjct: 86 IYLDGGFGVGKTHLLASTWHAAPGPKAFGTFVEYTNLVGALSFRKAVDQLKEYTLVCIDE 145 Query: 116 IDLLDFNDTQLFH-IINSIHQYDSSLLMTARTFPVSWG---VCLPDLCS----------- 160 +L D DT L ++ + L+ T+ T P S G D Sbjct: 146 FELDDPGDTVLMSRLMRELADAGVRLVATSNTLPGSLGEGRFAAQDFKREIQVLAEQFEV 205 Query: 161 --------RLKAATVVKISLPDDDFLEKVIVKMFADRQ-IFIDK-KLAAYIVQRMERSLV 210 R + T LPDD + + F D + +D ++ R+ S Sbjct: 206 IRVDGEDYRHRGLTAAPDPLPDDQVVATA-EQNFPDAGVLAVDDFDALTAMLSRVHPS-- 262 Query: 211 FAEKLVDKMDNLALSRGMGIT 231 +LV +D LAL IT Sbjct: 263 RYRELVKDVDVLALHDVKTIT 283 >gi|170760872|ref|YP_001788390.1| Holliday junction DNA helicase RuvB [Clostridium botulinum A3 str. Loch Maree] gi|238688789|sp|B1L0B2|RUVB_CLOBM RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|169407861|gb|ACA56272.1| Holliday junction DNA helicase RuvB [Clostridium botulinum A3 str. Loch Maree] Length = 342 Score = 40.5 bits (94), Expect = 0.24, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 3/70 (4%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+ GP G GK+ LANI +++ +++ L D D+L ++ Sbjct: 55 VLFYGPPGLGKTTLANIIANEMTGNLKVTSGPAIEKAGDLAAILTSLTDYDVLFIDEI-- 112 Query: 127 FHIINSIHQY 136 H +N + Sbjct: 113 -HRLNRSIEE 121 >gi|170108166|ref|XP_001885292.1| predicted protein [Laccaria bicolor S238N-H82] gi|164639768|gb|EDR04037.1| predicted protein [Laccaria bicolor S238N-H82] Length = 770 Score = 40.5 bits (94), Expect = 0.24, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 23/46 (50%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 V+L GP G GK+ LA +++SR+ S L + + + + Sbjct: 499 VLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAV 544 Score = 37.1 bits (85), Expect = 2.2, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 20/38 (52%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P R V+L GP G GK+ LAN + + S A S+ Sbjct: 155 PPRGVLLHGPPGCGKTLLANAMAGELGVPFISISAPSI 192 >gi|154248858|ref|YP_001409683.1| ATP-dependent metalloprotease FtsH [Fervidobacterium nodosum Rt17-B1] gi|154152794|gb|ABS60026.1| ATP-dependent metalloprotease FtsH [Fervidobacterium nodosum Rt17-B1] Length = 614 Score = 40.5 bits (94), Expect = 0.24, Method: Composition-based stats. Identities = 32/221 (14%), Positives = 67/221 (30%), Gaps = 63/221 (28%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 ++LVGP G+GK+ LA + ++ F + + Sbjct: 196 ILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFEQAKANSPCI 255 Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 V +++ID + D + L + ++ + ++M A P L Sbjct: 256 VFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDVNQAIVVMAATNRPDILDPAL 315 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL--------------- 197 L+ V + PD E ++ ++ I D + Sbjct: 316 ------LRPGRFDKKVVVDPPDVKGREAILKIHLRNKPIDKDVDVSVLAKRTTGFVGADL 369 Query: 198 ------AAYIVQRMERSLVFAEKLVDKMDN--LALSRGMGI 230 AA + R R+++ + +D +R + Sbjct: 370 ENLVNEAALLAARDGRNVIKMNDFEEAIDRVIAGPARKSRV 410 >gi|76802176|ref|YP_327184.1| AAA-type ATPase (transitional ATPase homolog) [Natronomonas pharaonis DSM 2160] gi|76558041|emb|CAI49627.1| AAA-type ATPase (transitional ATPase homolog) [Natronomonas pharaonis DSM 2160] Length = 740 Score = 40.5 bits (94), Expect = 0.24, Method: Composition-based stats. Identities = 23/163 (14%), Positives = 62/163 (38%), Gaps = 33/163 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P + V+L GP G+GK+ LA ++++ ++ FS + + + Sbjct: 222 PPQGVLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDATEE 281 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + ++++D + QL +++ + +++ A S Sbjct: 282 SPSIIFIDELDSIAPKREDVTGEVERRVVAQLLTMMDGLESRGQVIVIAATNRVDS---V 338 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L + ++I +PD+ ++++ R + + + Sbjct: 339 DPALRRPGRFDREIEIGVPDETGRKEILQ--IHTRGMPLADDV 379 Score = 37.4 bits (86), Expect = 1.8, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 19/32 (59%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P V+L GP G+GK+ +A ++++ + S Sbjct: 495 PPSGVLLYGPPGTGKTLMAKAVANETNANFIS 526 >gi|16127466|ref|NP_422030.1| Holliday junction DNA helicase B [Caulobacter crescentus CB15] gi|221236279|ref|YP_002518716.1| Holliday junction DNA helicase RuvB [Caulobacter crescentus NA1000] gi|20140205|sp|Q9A3G8|RUVB_CAUCR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|254767417|sp|B8H454|RUVB_CAUCN RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|13424920|gb|AAK25198.1| Holliday junction DNA helicase RuvB [Caulobacter crescentus CB15] gi|220965452|gb|ACL96808.1| Holliday junction DNA helicase ruvB [Caulobacter crescentus NA1000] Length = 346 Score = 40.5 bits (94), Expect = 0.24, Method: Composition-based stats. Identities = 35/203 (17%), Positives = 67/203 (33%), Gaps = 31/203 (15%) Query: 67 VILVGPSGSGKSCLANI--------WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL 118 V+L GP G GK+ LA I + S + ++ + +++I Sbjct: 56 VLLFGPPGLGKTTLAQIVARELGVNFRATSGPVLNKPGDLAAILTNLEANDVLFIDEIHR 115 Query: 119 LDFNDTQLF------HIINSIHQYDSSL-----------LMTARTFPVSWGVCLPDLCSR 161 L N ++ H+++ + S L+ A T L D Sbjct: 116 LSSNVEEILYPAMEDHVLDLVIGEGPSARSIRIDLAPFTLVAATTRAGMLATPLRD---- 171 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 + +++ L V+ + A I +R + A +L+ ++ + Sbjct: 172 -RFGIPIRLEFYTPAELRHVLQHAARKMGAPLTDDGADEIAKRARGTPRVAGRLLRRVRD 230 Query: 222 LALSRGM-GITRSLAAEVLKETQ 243 A + G I R AA L + Sbjct: 231 FATADGADRIDRKAAAMALARLE 253 >gi|56807432|ref|ZP_00365394.1| COG2256: ATPase related to the helicase subunit of the Holliday junction resolvase [Streptococcus pyogenes M49 591] Length = 353 Score = 40.5 bits (94), Expect = 0.24, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 59/166 (35%), Gaps = 22/166 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST---------RFSNIAKSLDSILIDTRKPVLLEDID 117 +IL GP G GK+ +A+ + +R + + + +LL++I Sbjct: 42 MILYGPPGIGKTSIASAIAGTTRYAFRTFNATIDSKKRLQEIAEEAKFSGGLVLLLDEIH 101 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 LD + +++M T + P + SR + ++ ++ Sbjct: 102 RLDKTKQDFL----LPLLENGTIIMIGATTENPFFSVTPAIRSR---VQIFELEPLSNED 154 Query: 178 LEKVIVKMFAD--RQ----IFIDKKLAAYIVQRMERSLVFAEKLVD 217 ++ I +D R + ID + +IV L A +D Sbjct: 155 IKTAIQLAISDKERGFPFLVTIDDEALDFIVTTTNGDLRSAYNSLD 200 >gi|331001822|ref|ZP_08325344.1| hypothetical protein HMPREF0491_00206 [Lachnospiraceae oral taxon 107 str. F0167] gi|330412796|gb|EGG92179.1| hypothetical protein HMPREF0491_00206 [Lachnospiraceae oral taxon 107 str. F0167] Length = 441 Score = 40.1 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 27/180 (15%), Positives = 67/180 (37%), Gaps = 31/180 (17%) Query: 67 VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSILIDTRKP------------VL 112 +I GP G GK+ +A + ++ KS + + + + + Sbjct: 55 IIFFGPPGCGKTTIAKVIANTTKSNFKQINATMAGKKEMEEAVSEAKISFSMYKKKTILF 114 Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +++I + + + + +L+ A T + V L SR + V+++ Sbjct: 115 IDEIHRFNKSQQDYLLPF---VEDGTIILIGATTENPFFEVNKA-LISR---SRVLELKS 167 Query: 173 PDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 D +E ++ K +D R + I K+ ++ + + A ++ ++ L+ Sbjct: 168 LSDKDIEYILEKAISDRERGMGRYETDISKEAIEFLAKSVS---GDARNALNALELAILT 224 >gi|324513590|gb|ADY45579.1| Transitional endoplasmic reticulum ATPase 2 [Ascaris suum] Length = 474 Score = 40.1 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA + + ++ S L ++ + + + D Sbjct: 179 PSRGVLFYGPPGCGKTLLAKAIAHECQANFISIKGPELLTMWFGESEANVRDVFDKA 235 >gi|242810288|ref|XP_002485551.1| sister chromatid cohesion factor (Chl12), putative [Talaromyces stipitatus ATCC 10500] gi|218716176|gb|EED15598.1| sister chromatid cohesion factor (Chl12), putative [Talaromyces stipitatus ATCC 10500] Length = 1151 Score = 40.1 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 4/65 (6%) Query: 61 SWPSRV-VILVGPSGSGKSCLANIWSDKSRSTRF---SNIAKSLDSILIDTRKPVLLEDI 116 W R ++L GP G GK+ LA++ + ++ ++ +S D + R V E++ Sbjct: 457 EWAHRKILMLTGPPGLGKTTLAHVCAQQAGYEVLEINASDERSRDVVKGRIRDAVGTENV 516 Query: 117 DLLDF 121 + Sbjct: 517 KSISA 521 >gi|198461041|ref|XP_001361892.2| GA17483 [Drosophila pseudoobscura pseudoobscura] gi|198137214|gb|EAL26471.2| GA17483 [Drosophila pseudoobscura pseudoobscura] Length = 745 Score = 40.1 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 22/43 (51%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109 V+LVGP G+GK+ LA + +++ F D +L+ Sbjct: 345 VLLVGPPGTGKTLLARAVAGEAKVPFFHAAGPEFDEVLVGQGA 387 >gi|297190256|ref|ZP_06907654.1| IstB domain-containing protein ATP-binding protein [Streptomyces pristinaespiralis ATCC 25486] gi|197719122|gb|EDY63030.1| IstB domain-containing protein ATP-binding protein [Streptomyces pristinaespiralis ATCC 25486] Length = 168 Score = 40.1 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 15/110 (13%), Positives = 36/110 (32%), Gaps = 22/110 (20%) Query: 63 PSRVVILVGPSGSGKSCLA----NIWSDKSRSTRFSNIAKSLDSILIDTR---------- 108 + L+G SG+GKS L ++ R++ A ++ + Sbjct: 15 AGNPLCLIGDSGTGKSHLLIGLGTAIAEAGGRIRYTTAANLVNELAEAASDKQLGRTIKK 74 Query: 109 ----KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSW 151 + L++ + + LF I + + ++ + + W Sbjct: 75 YGRVDLLCLDEFGYVKLDRHGAELLFQIF-TEREERHAIAIASNRPFTEW 123 >gi|307592309|ref|YP_003899900.1| ABC transporter domain-containing protein [Cyanothece sp. PCC 7822] gi|306985954|gb|ADN17834.1| ABC transporter domain protein [Cyanothece sp. PCC 7822] Length = 560 Score = 40.1 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 25/51 (49%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL 113 P+ +++ GPSG GKS L + + I ++ +L ++P ++ Sbjct: 379 PASDLLIWGPSGCGKSSLLRAIAGLDNAGTGLIIRPDIEQMLFLPQRPYMI 429 >gi|195170272|ref|XP_002025937.1| GL10197 [Drosophila persimilis] gi|194110801|gb|EDW32844.1| GL10197 [Drosophila persimilis] Length = 744 Score = 40.1 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 22/43 (51%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109 V+LVGP G+GK+ LA + +++ F D +L+ Sbjct: 344 VLLVGPPGTGKTLLARAVAGEAKVPFFHAAGPEFDEVLVGQGA 386 >gi|51893539|ref|YP_076230.1| recombination factor protein RarA [Symbiobacterium thermophilum IAM 14863] gi|51857228|dbj|BAD41386.1| ATP/GTP-binding domain protein [Symbiobacterium thermophilum IAM 14863] Length = 438 Score = 40.1 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 33/201 (16%), Positives = 72/201 (35%), Gaps = 41/201 (20%) Query: 68 ILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVL---------L 113 IL GP G+GK+ LA + + + ++ + + I+ + R + + Sbjct: 56 ILFGPPGTGKTTLARLMASNVNAHFEQLNAVTSGVQDIRRIVDEARARLAERGQKTVVFI 115 Query: 114 EDIDLLDFNDT-QLF-HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 ++I + L H+ + L+ A T V P L SR + + ++ Sbjct: 116 DEIHRWRKDQQDALLPHV-----EDGLITLVGATTQNPLVSVNAP-LVSRTR---IFELK 166 Query: 172 LPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 D+ + ++ + R + + + ++V RM + A ++ ++ L Sbjct: 167 PLSDEHIAHLLDRALRTPGRGLGNYNATVTPEAMEHLV-RM--AGGDARAALNALELAVL 223 Query: 225 ------SRGMGITRSLAAEVL 239 +T A E L Sbjct: 224 LTQPDEQGRRTVTLETAEEAL 244 >gi|157828159|ref|YP_001494401.1| putative ATPase n2B [Rickettsia rickettsii str. 'Sheila Smith'] gi|165932857|ref|YP_001649646.1| ATPase [Rickettsia rickettsii str. Iowa] gi|157800640|gb|ABV75893.1| putative ATPase n2B [Rickettsia rickettsii str. 'Sheila Smith'] gi|165907944|gb|ABY72240.1| ATPase [Rickettsia rickettsii str. Iowa] Length = 350 Score = 40.1 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 42/109 (38%), Gaps = 24/109 (22%) Query: 67 VILVGPSGSGKSCLANIWSD-----------------------KSRSTRFSNIAKSLDSI 103 + L GP GSGK+ L N + + K ++ +I + Sbjct: 47 IYLYGPVGSGKTMLMNSFCEELTTPKIIIHYQNFMQEIHKSMHKLQTANQKDIIPKIAKN 106 Query: 104 LIDTRKPVLLEDIDLLDFNDTQLFH-IINSIHQYDSSLLMTARTFPVSW 151 K + +++ ++ D D + + N++ Q + + +T+ T P + Sbjct: 107 YTKQTKVLCIDEFEIKDITDAMIIGRLFNALIQQNIFIFITSNTSPNNL 155 >gi|326488723|dbj|BAJ97973.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 830 Score = 40.1 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 25/57 (43%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA + +S + S L ++ + + E D Sbjct: 514 PSRGVLFFGPPGCGKTLLAKAVASESTANFISVKGPELLTMWFGESEANVREVFDKA 570 Score = 39.4 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 34/74 (45%), Gaps = 16/74 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + V+L GP G+GK+ +A ++++ + F +N+ ++ + + Sbjct: 241 PPKGVLLHGPPGTGKTLIARAVANETGAFFFLINGPEIMSKMAGDSEANLRRAFEEAEKN 300 Query: 107 TRKPVLLEDIDLLD 120 + +++ID + Sbjct: 301 APAIIFIDEIDSIA 314 >gi|325001112|ref|ZP_08122224.1| hypothetical protein PseP1_20222 [Pseudonocardia sp. P1] Length = 236 Score = 40.1 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 36/151 (23%), Positives = 55/151 (36%), Gaps = 33/151 (21%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRF------------SNIAKSLDSILIDTRKPV 111 R V+L GP G+GKS L + + +S A +L D P Sbjct: 38 GRHVVLEGPPGTGKSTLLHAIARESGRRTVFVEGNAELTPARLVGAFDPAQVLTDGYVPA 97 Query: 112 LLEDIDLLDF----NDTQLFHI--INSIHQYDSSLLMTARTFPVSWGVCLPDLCS----- 160 D LL D+ L ++ +N I + ++L+T T + +P L + Sbjct: 98 AFVDGPLLTALRGDGDSGLLYLEEMNRIPEETLNVLITVLT---EGEITVPRLGTVPAGP 154 Query: 161 --RLKAATVVKISLPDDDFLEKVIVKMFADR 189 RL AA P D + + ADR Sbjct: 155 GFRLIAAM-----NPFDAVGTARVSQAIADR 180 >gi|323165534|gb|EFZ51321.1| insertion sequence IS21 putative ATP-binding protein [Shigella sonnei 53G] Length = 265 Score = 40.1 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 63/165 (38%), Gaps = 38/165 (23%) Query: 16 QKNDQPKNKEEQLF-------FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVI 68 Q+ + + K+ +L F F GI R +V + ++ + VI Sbjct: 51 QRGMESRLKQARLPWVKTLEQFDFTFQPGIDRK--VVRE--LAGLAFVERSEN-----VI 101 Query: 69 LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDTRKP 110 L+GP G GK+ LA K+ + LD ++ + + Sbjct: 102 LLGPPGVGKTHLAIALGVKAVDAGHRVLFMPLDRLIATLMKAKQENRLERQLQQLSYARV 161 Query: 111 VLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWG 152 ++L++ID L N + F ++N +S+++T+ WG Sbjct: 162 LILDEIDYLPMNREEASLFFRLLNR-RYEKASIILTSNKGFADWG 205 >gi|312371657|gb|EFR19786.1| hypothetical protein AND_21807 [Anopheles darlingi] Length = 419 Score = 40.1 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 55/142 (38%), Gaps = 43/142 (30%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P++ ++L GP G+GK+ LA + + +T FS A +L S + + ++ Sbjct: 163 PAKGLLLFGPPGNGKTLLARAVATECSATFFSISAATLTSKYVGEGEKLVRALFAVAREL 222 Query: 113 ------LEDIDLL----DFNDTQL-----------FHIINSIHQYDSSLLMTARTFPVSW 151 ++++D + N+ + F + + + D ++M A P Sbjct: 223 QPSIIFIDEVDSVLSERSSNEHEATRRLKTEFLVQFDGLPANSEADKIVVMAATNRPQEL 282 Query: 152 G------------VCLPDLCSR 161 V LPDL +R Sbjct: 283 DEAALRRFPKRVYVTLPDLDTR 304 >gi|296417934|ref|XP_002838602.1| hypothetical protein [Tuber melanosporum Mel28] gi|295634552|emb|CAZ82793.1| unnamed protein product [Tuber melanosporum] Length = 747 Score = 40.1 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 12/28 (42%), Positives = 18/28 (64%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS 94 V+L GP G GK+ LA +++SR+ S Sbjct: 500 VLLWGPPGCGKTLLAKAVANESRANFIS 527 >gi|282855978|ref|ZP_06265269.1| RecA protein [Pyramidobacter piscolens W5455] gi|282586197|gb|EFB91474.1| RecA protein [Pyramidobacter piscolens W5455] Length = 386 Score = 40.1 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 5/77 (6%) Query: 64 SRVVILVGPSGSGKSCLA-NIWSDKSRSTRFSNI--AKSLDSILIDTRKPVLLEDIDLLD 120 R+V + GP GSGK+ LA + ++ ++ + A+ + V +E + L Sbjct: 65 GRIVEVFGPEGSGKTTLALHAIAEAQKAGGVAAFIDAEHALDPRLAAALGVQIESLYLSQ 124 Query: 121 FN--DTQLFHIINSIHQ 135 + + LF + + Sbjct: 125 PDSGEQALFILETLVRS 141 >gi|296089089|emb|CBI38792.3| unnamed protein product [Vitis vinifera] Length = 491 Score = 40.1 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 30/50 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S +T F+ A SL S + + ++ Sbjct: 252 PARGLLLFGPPGNGKTMLAKAVASESAATFFNVSASSLTSKWVGEGEKLV 301 >gi|257459680|ref|ZP_05624789.1| ATPase, AAA family [Campylobacter gracilis RM3268] gi|257443105|gb|EEV18239.1| ATPase, AAA family [Campylobacter gracilis RM3268] Length = 395 Score = 40.1 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 71/184 (38%), Gaps = 21/184 (11%) Query: 65 RVVILVGPSGSGKSCLANIWSDK---------SRSTRFSNIAKSLDSILIDTRKPVL-LE 114 I G +GSGK+ +A + + + + S + +I K L S KP++ ++ Sbjct: 35 PHSIFFGAAGSGKTTMARVIASELNYDFYELDATSLKVEDIRKILSSHAGSLIKPLIFID 94 Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 +I L ++ I + + ++ T V + SR + + + Sbjct: 95 EIHRLSKTQQEVL----LIPMENYAAIIIGATTENPQFVLSSGIRSR---SMIFEFEPLS 147 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSL 234 + LE ++ ++ + +D++ Y++ S A +++ + AL IT Sbjct: 148 YEDLEALLARVQGEIGFEMDEEARKYLLNS---SSGDARSMLNLL-EFALLADSAITLDT 203 Query: 235 AAEV 238 + Sbjct: 204 LRTL 207 >gi|217075901|gb|ACJ86310.1| unknown [Medicago truncatula] Length = 284 Score = 40.1 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 19/32 (59%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + V+L GP G+GK+ LA + +S + + Sbjct: 118 PQKGVLLYGPPGTGKTMLAKAIAKESGAVFIN 149 >gi|254167708|ref|ZP_04874558.1| 26S proteasome subunit P45 family [Aciduliprofundum boonei T469] gi|289597057|ref|YP_003483753.1| 26S proteasome subunit P45 family [Aciduliprofundum boonei T469] gi|197623236|gb|EDY35801.1| 26S proteasome subunit P45 family [Aciduliprofundum boonei T469] gi|289534844|gb|ADD09191.1| 26S proteasome subunit P45 family [Aciduliprofundum boonei T469] Length = 394 Score = 40.1 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P + V+L GP G+GK+ LA + + +T + L I ++ E DL Sbjct: 171 PPKGVLLAGPPGTGKTLLAKAVAHHTHATFIRTVGSELVRKYIGEGAKLVRELFDLA 227 >gi|167644521|ref|YP_001682184.1| IstB ATP-binding domain-containing protein [Caulobacter sp. K31] gi|167644533|ref|YP_001682196.1| IstB ATP-binding domain-containing protein [Caulobacter sp. K31] gi|167346951|gb|ABZ69686.1| IstB domain protein ATP-binding protein [Caulobacter sp. K31] gi|167346963|gb|ABZ69698.1| IstB domain protein ATP-binding protein [Caulobacter sp. K31] Length = 242 Score = 40.1 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 22/109 (20%) Query: 65 RVVILVGPSGSGKSCLANIWSD---KSRST-RFSNIAKSLDSILIDTRK------PVLLE 114 R V+LVG +G+GK+ LA + ++ + RF N+ ++ + +TR+ L Sbjct: 99 RNVVLVGGTGTGKTHLAIAITANVVRAGARGRFFNLVDLVNRLEDETRRGKAGTLAAQLS 158 Query: 115 DIDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 +DL+ ++ LFH+I+ +++ +S+++T W Sbjct: 159 RLDLVVLDELGYLPFAQSGGQLLFHLISKLYER-TSVIITTNLAFGEWP 206 >gi|110591249|pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) gi|110591250|pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) gi|110591251|pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) gi|110591252|pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) gi|110591253|pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) gi|110591254|pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) Length = 499 Score = 40.1 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 21/48 (43%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 V+LVGP G GK+ LA + ++R + + + + + Sbjct: 67 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRD 114 >gi|24652279|ref|NP_724866.1| TER94, isoform B [Drosophila melanogaster] gi|7303817|gb|AAF58864.1| TER94, isoform B [Drosophila melanogaster] gi|25012330|gb|AAN71276.1| LP12034p [Drosophila melanogaster] gi|220950626|gb|ACL87856.1| TER94-PB [synthetic construct] Length = 297 Score = 40.1 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 3 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKA 59 >gi|68535343|ref|YP_250048.1| cell division protein [Corynebacterium jeikeium K411] gi|68262942|emb|CAI36430.1| cell division protein [Corynebacterium jeikeium K411] Length = 796 Score = 40.1 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 37/209 (17%), Positives = 70/209 (33%), Gaps = 55/209 (26%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110 R V+L GP G+GK+ LA + ++ F+ + + Sbjct: 202 RGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFKQAKENSP 261 Query: 111 --VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGV 153 + +++ID + + L + ++ D +LM A P Sbjct: 262 CIIFVDEIDAVGRQRGAGMGGGHDEREQTLNQLLVEMDGFGDRDGVILMAATNRPDILDP 321 Query: 154 CL--------------PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR-----QIFID 194 L PDL R ++ + D + V +K A R ++ Sbjct: 322 ALLRPGRFDRQIPVTNPDLAGR---EQILNVHAKDKPLAKDVDLKSLAKRTAGMSGADLE 378 Query: 195 KKL--AAYIVQRMERSLVFAEKLVDKMDN 221 L AA + R+E +++ A+ L + D Sbjct: 379 NVLNEAALLTARVEGNVITADALEEATDR 407 >gi|67643955|ref|ZP_00442698.1| ATPase, AAA family protein [Burkholderia mallei GB8 horse 4] gi|76809377|ref|YP_334448.1| recombination factor protein RarA [Burkholderia pseudomallei 1710b] gi|121599128|ref|YP_992137.1| recombination factor protein RarA [Burkholderia mallei SAVP1] gi|124386623|ref|YP_001028581.1| recombination factor protein RarA [Burkholderia mallei NCTC 10229] gi|126448329|ref|YP_001081520.1| recombination factor protein RarA [Burkholderia mallei NCTC 10247] gi|134280424|ref|ZP_01767135.1| ATPase, AAA family [Burkholderia pseudomallei 305] gi|166998317|ref|ZP_02264177.1| ATPase, AAA family protein [Burkholderia mallei PRL-20] gi|167816971|ref|ZP_02448651.1| recombination factor protein RarA [Burkholderia pseudomallei 91] gi|254175353|ref|ZP_04882013.1| ATPase, AAA family protein [Burkholderia mallei ATCC 10399] gi|254191852|ref|ZP_04898355.1| ATPase, AAA family [Burkholderia pseudomallei Pasteur 52237] gi|254196125|ref|ZP_04902550.1| ATPase, AAA family [Burkholderia pseudomallei S13] gi|254202387|ref|ZP_04908750.1| ATPase, AAA family protein [Burkholderia mallei FMH] gi|254207719|ref|ZP_04914069.1| ATPase, AAA family protein [Burkholderia mallei JHU] gi|254261086|ref|ZP_04952140.1| replication-associated recombination protein A [Burkholderia pseudomallei 1710a] gi|254356381|ref|ZP_04972657.1| ATPase, AAA family protein [Burkholderia mallei 2002721280] gi|76578830|gb|ABA48305.1| ATPase, AAA family protein [Burkholderia pseudomallei 1710b] gi|121227938|gb|ABM50456.1| ATPase, AAA family protein [Burkholderia mallei SAVP1] gi|124294643|gb|ABN03912.1| ATPase, AAA family [Burkholderia mallei NCTC 10229] gi|126241199|gb|ABO04292.1| ATPase, AAA family protein [Burkholderia mallei NCTC 10247] gi|134248431|gb|EBA48514.1| ATPase, AAA family [Burkholderia pseudomallei 305] gi|147746634|gb|EDK53711.1| ATPase, AAA family protein [Burkholderia mallei FMH] gi|147751613|gb|EDK58680.1| ATPase, AAA family protein [Burkholderia mallei JHU] gi|148025378|gb|EDK83532.1| ATPase, AAA family protein [Burkholderia mallei 2002721280] gi|157939523|gb|EDO95193.1| ATPase, AAA family [Burkholderia pseudomallei Pasteur 52237] gi|160696397|gb|EDP86367.1| ATPase, AAA family protein [Burkholderia mallei ATCC 10399] gi|169652869|gb|EDS85562.1| ATPase, AAA family [Burkholderia pseudomallei S13] gi|238525428|gb|EEP88856.1| ATPase, AAA family protein [Burkholderia mallei GB8 horse 4] gi|243065389|gb|EES47575.1| ATPase, AAA family protein [Burkholderia mallei PRL-20] gi|254219775|gb|EET09159.1| replication-associated recombination protein A [Burkholderia pseudomallei 1710a] Length = 436 Score = 40.1 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 61/173 (35%), Gaps = 28/173 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA + + + A I + ++ + T L Sbjct: 50 MILWGPPGVGKTTLARLTALAFDCEFIALSAVLGGVKDIREAMEQARDTLNRTGRH-TIL 108 Query: 127 F----HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 F H N Q +LL + A T S+ V L SR A V + Sbjct: 109 FVDEIHRFNKAQQD--ALLPFVESGLVTFIGATTENPSFEVNSA-LLSR---AQVYVLKS 162 Query: 173 PDDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 +D L +++ K D + D K +V + A + ++ ++ Sbjct: 163 LAEDELRQLL-KRAQDVALGGLAFDDKAVDTLVGYAD---GDARRFLNLLEQA 211 >gi|302680046|ref|XP_003029705.1| hypothetical protein SCHCODRAFT_58751 [Schizophyllum commune H4-8] gi|300103395|gb|EFI94802.1| hypothetical protein SCHCODRAFT_58751 [Schizophyllum commune H4-8] Length = 724 Score = 40.1 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P R V+L GP G GK+ LA+ + + S A S+ S + + L + D Sbjct: 125 PPRGVLLHGPPGCGKTLLAHAIAGELGVPFISISAPSIVSGMSGESEKTLRDTFDEA 181 Score = 39.0 bits (90), Expect = 0.65, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 23/46 (50%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 V+L GP G GK+ LA +++S ++ S L + + + + Sbjct: 464 VLLWGPPGCGKTLLARAVANESCASFVSVKGPELLNKYVGESERAV 509 >gi|294494986|ref|YP_003541479.1| proteasome-activating nucleotidase [Methanohalophilus mahii DSM 5219] gi|292665985|gb|ADE35834.1| Proteasome-activating nucleotidase [Methanohalophilus mahii DSM 5219] Length = 429 Score = 40.1 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 27/57 (47%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P + V+L GP G+GK+ +A + ++ +T + L I ++ E D+ Sbjct: 204 PPKGVLLHGPPGTGKTMMAKAVAHRTDATFIRVVGSELVQKYIGEGSRLVREVFDMA 260 >gi|297738362|emb|CBI27563.3| unnamed protein product [Vitis vinifera] Length = 769 Score = 40.1 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 41/108 (37%), Gaps = 29/108 (26%) Query: 60 PSW----PSRVVILVGPSGSGKSCLANIWSDK--------SRSTRFSNIAKSLDSILID- 106 P W P ++L GP G GK+ LA+ +++ S + S ++ + + + + Sbjct: 219 PRWLGVRPMAGILLHGPPGCGKTKLAHAIANETKVPFYKISATEVVSGVSGASEENIREL 278 Query: 107 -------TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL---LMTA 144 V +++ID + N + + + LMT Sbjct: 279 FSKAYRTAPSIVFIDEIDAIASKRE------NLNREMERRIVTQLMTC 320 Score = 36.7 bits (84), Expect = 2.9, Method: Composition-based stats. Identities = 8/46 (17%), Positives = 20/46 (43%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 +L GP G GK+ +A ++++ + L + + + + Sbjct: 535 FLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAV 580 >gi|226366324|ref|YP_002784107.1| recombination factor protein RarA [Rhodococcus opacus B4] gi|226244814|dbj|BAH55162.1| putative AAA family ATPase [Rhodococcus opacus B4] Length = 477 Score = 40.1 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 23/154 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G+GK+ LA++ S + RF ++ +L + + + R + L LL T L Sbjct: 81 VLLYGPPGTGKTTLASLISGATG-RRFEALS-ALSAGVKEVRGVIELARRRLLAGEQTVL 138 Query: 127 F----HIIN--------SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H + + + LL+ A T S+ V P L SR + V+++ Sbjct: 139 FIDEVHRFSKTQQDALLAAVENRIVLLVAATTENPSFSVVSP-LLSR---SLVLQLQSLT 194 Query: 175 DDFLEKVIVKMFAD-RQI----FIDKKLAAYIVQ 203 D +E ++ + D R + I ++V+ Sbjct: 195 ADDIENLLERARTDERGLGGDIEIAGDAMDHLVR 228 >gi|208434367|ref|YP_002266033.1| conserved hypothetical helicase-like protein [Helicobacter pylori G27] gi|208432296|gb|ACI27167.1| conserved hypothetical helicase-like protein [Helicobacter pylori G27] Length = 391 Score = 40.1 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 63/169 (37%), Gaps = 20/169 (11%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILI--------DTRKPVLLE 114 GP G GK+ LA I + F+ L+ + + + V ++ Sbjct: 38 PHAFFYGPPGVGKTSLAQIIARSLERPILLFNATDFKLEDLRLKLKNYQNTLLKPVVFID 97 Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 + L+ + I + + +L++ A T ++ + + SR + + +++ Sbjct: 98 ETHRLNKTQQEFLLPI---MEKNHALILGASTQDPNYSLSHA-IRSR---SFIFELTPLK 150 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 L+K+ K + I+ Y++ S A L++ +D A Sbjct: 151 KSDLDKLCTKALTLLKKQIEPSAKTYLLNN---SAGDARALLNLLDLSA 196 >gi|168027617|ref|XP_001766326.1| predicted protein [Physcomitrella patens subsp. patens] gi|162682540|gb|EDQ68958.1| predicted protein [Physcomitrella patens subsp. patens] Length = 398 Score = 40.1 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 20/32 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + V+L GP G+GK+ LA + +SR+ + Sbjct: 119 PQKGVLLFGPPGTGKTLLAKAIAKESRAVFIN 150 >gi|126439052|ref|YP_001060001.1| recombination factor protein RarA [Burkholderia pseudomallei 668] gi|126218545|gb|ABN82051.1| replication-associated recombination protein A [Burkholderia pseudomallei 668] Length = 436 Score = 40.1 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 61/173 (35%), Gaps = 28/173 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA + + + A I + ++ + T L Sbjct: 50 MILWGPPGVGKTTLARLTALAFDCEFIALSAVLGGVKDIREAMEQARDTLNRTGRH-TIL 108 Query: 127 F----HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 F H N Q +LL + A T S+ V L SR A V + Sbjct: 109 FVDEIHRFNKAQQD--ALLPFVESGLVTFIGATTENPSFEVNSA-LLSR---AQVYVLKS 162 Query: 173 PDDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 +D L +++ K D + D K +V + A + ++ ++ Sbjct: 163 LAEDELRQLL-KRAQDVALGGLAFDDKAVDTLVGYAD---GDARRFLNLLEQA 211 >gi|330836554|ref|YP_004411195.1| Holliday junction DNA helicase subunit RuvB [Spirochaeta coccoides DSM 17374] gi|329748457|gb|AEC01813.1| Holliday junction DNA helicase subunit RuvB [Spirochaeta coccoides DSM 17374] Length = 356 Score = 40.1 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 66/190 (34%), Gaps = 32/190 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI--------LIDTRKPVLLEDIDL 118 V L+GP G GK+ LA I +++ + A +LD I +++I Sbjct: 70 VFLIGPPGLGKTTLATIIANEMNAEIRMTSAPALDKPKDLAGILTNISENSVFFIDEIHR 129 Query: 119 LDFNDTQLFHIINSIHQYDSSLLMTARTFPVS-WGVCLPD----------------LCSR 161 L ++ +I + + + + LP L SR Sbjct: 130 LKPALEEMLYI---AMEDYEIDWVIGQGPAARTMRIPLPRFTLIGATTKAGQVSSPLHSR 186 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER-SLVFAEKLVDKMD 220 I +++ L +I++ I + ++ R R + A +L+ ++ Sbjct: 187 F--GITCHIDFYNENELSGIILRSSGIVGTEITPDAVS-LLARCSRGTPRIANRLLRRLR 243 Query: 221 NLALSRGMGI 230 + A G GI Sbjct: 244 DFADVIGTGI 253 >gi|312216774|emb|CBX96724.1| similar to cell division control protein 48 [Leptosphaeria maculans] Length = 830 Score = 40.1 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 49/121 (40%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 265 PPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 324 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + + ++M A P S Sbjct: 325 SPAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSIDPA 384 Query: 155 L 155 L Sbjct: 385 L 385 Score = 38.2 bits (88), Expect = 1.0, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 59/176 (33%), Gaps = 41/176 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 PSR V+ GP G+GK+ LA +++ + SNI D Sbjct: 539 PSRGVLFYGPPGTGKTLLAKAVANECAANFISIKGPELLSMWFGESESNIRDIFDKARAA 598 Query: 107 TRKPVLLEDIDLLDFND---------------TQLFHIINSIHQYDSSLLMTARTFPVSW 151 V L+++D + + QL ++ + + ++ A P Sbjct: 599 APCVVFLDELDSIAKSRGGSQGDAGGASDRVVNQLLTEMDGMTSKKNVFVIGATNRPEQL 658 Query: 152 GVCL--PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQR 204 L P RL T+V + LPD ++ R+ + + +I Sbjct: 659 DNALCRP---GRLD--TLVYVPLPDQASRASIL--KAQLRKTPVADDVNIDFIAAN 707 >gi|311031508|ref|ZP_07709598.1| Holliday junction DNA helicase RuvB [Bacillus sp. m3-13] Length = 337 Score = 40.1 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 27/62 (43%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G GK+ LA I +++ + +++ LE D+L ++ Sbjct: 56 VLLYGPPGLGKTTLAAIIANEMGVQLRTTAGPAIERPGDLAAILSALEPGDVLFIDEIHR 115 Query: 127 FH 128 H Sbjct: 116 LH 117 >gi|259502971|ref|ZP_05745873.1| AAA family ATPase [Lactobacillus antri DSM 16041] gi|259169096|gb|EEW53591.1| AAA family ATPase [Lactobacillus antri DSM 16041] Length = 433 Score = 40.1 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 57/162 (35%), Gaps = 16/162 (9%) Query: 67 VILVGPSGSGKSCLANI--------WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL 118 ++L GP GSGK+ LA + + + S + + L D +LL++I Sbjct: 44 LLLWGPPGSGKTTLAYVMSQTLQLPFEKFNASIQNKGQLQKLVDAHPDESFVLLLDEIHR 103 Query: 119 LDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFL 178 L + LL+ T + P + SR + I + Sbjct: 104 LTKPLQDYLLPY---LENGHILLVGTTTENPIMAIQ-PAIRSRCQIFEFFPIGA---KAI 156 Query: 179 EKVIVKMFADR-QIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 E V+V+ AD + + A I + + ++D + Sbjct: 157 EPVLVRAAADHLGFTLPPEQAHAIANSGNGDVRVSLNILDTL 198 >gi|148269554|ref|YP_001244014.1| recombination factor protein RarA/unknown domain fusion protein [Thermotoga petrophila RKU-1] gi|147735098|gb|ABQ46438.1| Appr-1-p processing domain protein [Thermotoga petrophila RKU-1] Length = 599 Score = 40.1 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 36/179 (20%), Positives = 72/179 (40%), Gaps = 29/179 (16%) Query: 68 ILVGPSGSGKS----CLANIWSDK--------SRSTRFSNIAKSLDSILIDTRKPVL-LE 114 IL GP GSGK+ L ++ + + N+ K + + +K +L L+ Sbjct: 46 ILYGPPGSGKTSVFSLLKRYFNGEVVYLSSTVHGVSEIKNVLKRGEQLRKYGKKLLLFLD 105 Query: 115 DIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +I L+ N + H+ + +L+ T S+ + P L SR ++ Sbjct: 106 EIHRLNKNQQMVLVSHV-----ERGDIVLVATTTENPSFAIV-PALLSR---CRILYFKK 156 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD--NLALSRGMG 229 D+ L K++ K ++ +++ IV+ E A KL++ ++ + A Sbjct: 157 LSDEDLMKILKKATRVLKLDLEETAEKAIVKHSE---GDARKLLNTLEIVHQAFKNKRA 212 >gi|116805237|gb|ABK27669.1| putative ATPase (related to helicase subunit of Holliday junction resolvase) [Lactobacillus paracasei] Length = 295 Score = 40.1 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 51/138 (36%), Gaps = 21/138 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSI-----------LIDTRKPVLL 113 + GP G GK+ LA I + ++++ FS + + I + + V + Sbjct: 15 LNFWGPPGVGKTTLARIIARRTKAQFVTFSAVTSGIKEIKQVMKEAEQNRELGQKTIVFV 74 Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 ++I + F + S +L+ A T S+ V L SR + V + Sbjct: 75 DEIHRFNKAQQDAFLPY---VERGSIILIGATTENPSFEVNAA-LLSRTR---VFVLHGL 127 Query: 174 DDDFLEKVIVKMFAD-RQ 190 L ++ + D R Sbjct: 128 TSAELVDLLQRALKDPRG 145 >gi|268532274|ref|XP_002631265.1| Hypothetical protein CBG03070 [Caenorhabditis briggsae] Length = 807 Score = 40.1 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 515 PSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKA 571 Score = 40.1 bits (93), Expect = 0.31, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 27/120 (22%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ S F SN+ K+ + + Sbjct: 243 PPRGILLFGPPGTGKTLIARAVANETGSFFFLINGPEVMSKMSGESESNLRKAFEECEKN 302 Query: 107 TRKPVLLEDIDLLDFNDT-----------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + QL +++ + + +++ A P S L Sbjct: 303 QPAILFIDEIDAIAPKREKTNGEVERIVSQLLTLMDGVKGRSNLVVIAATNRPNSIDGAL 362 >gi|320590905|gb|EFX03346.1| vacuolar sorting ATPase [Grosmannia clavigera kw1407] Length = 427 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 36/80 (45%), Gaps = 14/80 (17%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + ++L GP G+GKS LA + +++ST FS + L S + + ++ + Sbjct: 169 PWKGILLYGPPGTGKSYLAKAVATEAKSTFFSVSSSDLVSKWMGESERLVKQ-------- 220 Query: 123 DTQLFHIINSIHQYDSSLLM 142 + N + S++ Sbjct: 221 ------LFNMARENKPSIIF 234 >gi|325107575|ref|YP_004268643.1| microtubule-severing ATPase [Planctomyces brasiliensis DSM 5305] gi|324967843|gb|ADY58621.1| Microtubule-severing ATPase [Planctomyces brasiliensis DSM 5305] Length = 447 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 10/28 (35%), Positives = 17/28 (60%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS 94 ++L GP G GK+ LA + + ++ FS Sbjct: 209 ILLYGPPGCGKTHLARATAGEIEASFFS 236 >gi|300175375|emb|CBK20686.2| unnamed protein product [Blastocystis hominis] Length = 422 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + VIL G G+GK+ LA ++K+ +T + L P L+ DI + Sbjct: 200 PPKGVILYGEPGTGKTLLAKAVANKTSATFLRLVGSELVQKY-AGEGPKLVRDIFRTARD 258 >gi|300709027|ref|XP_002996682.1| hypothetical protein NCER_100180 [Nosema ceranae BRL01] gi|239606002|gb|EEQ83011.1| hypothetical protein NCER_100180 [Nosema ceranae BRL01] Length = 397 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V++ GP G+GK+ +A + K+ +T L + I ++ + Sbjct: 177 PPKGVLMYGPPGTGKTLMARACASKTNATFLKLAGPQLVQMYIGDGARLVRD 228 >gi|224096592|ref|XP_002310664.1| predicted protein [Populus trichocarpa] gi|222853567|gb|EEE91114.1| predicted protein [Populus trichocarpa] Length = 655 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 22/40 (55%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P + ++L GP G+GK+ LA + ++ + S +L S Sbjct: 387 PCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS 426 >gi|242023130|ref|XP_002431989.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212517340|gb|EEB19251.1| conserved hypothetical protein [Pediculus humanus corporis] Length = 942 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 22/140 (15%), Positives = 42/140 (30%), Gaps = 35/140 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P R +L GP G GK+ LA + + A L D + Sbjct: 256 PPRGFLLHGPPGCGKTLLATAIAGELDVELIQISAPELIGGVSGESEERIRELFDRAVES 315 Query: 107 TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 + ++++D + N N+ + + ++ CL +L ++ Sbjct: 316 APCVLFIDEVDAIMQNRQ------NAQREMERRIV-------AQLLTCLDELNTKENGDL 362 Query: 167 VVKISL------PDDDFLEK 180 V+ I D Sbjct: 363 VLVIGATNRPDSLDPALRRA 382 Score = 37.4 bits (86), Expect = 1.9, Method: Composition-based stats. Identities = 9/46 (19%), Positives = 22/46 (47%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 +++ GP G GK+ LA ++++ S L ++ + + + Sbjct: 701 ILICGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYVGESERAV 746 >gi|213512535|ref|NP_001134354.1| 26S protease regulatory subunit S10B [Salmo salar] gi|209732644|gb|ACI67191.1| 26S protease regulatory subunit S10B [Salmo salar] Length = 389 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + ++ S+ I ++ E Sbjct: 166 PPKGCLLYGPPGTGKTLLARAVASQMDCNFLKVVSSSIVDKYIGESARLIRE-------- 217 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 218 ------MFNYARDHQ 226 >gi|254424470|ref|ZP_05038188.1| ATP-dependent metallopeptidase HflB subfamily [Synechococcus sp. PCC 7335] gi|196191959|gb|EDX86923.1| ATP-dependent metallopeptidase HflB subfamily [Synechococcus sp. PCC 7335] Length = 630 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 36/215 (16%), Positives = 68/215 (31%), Gaps = 47/215 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ + FS + + Sbjct: 210 VLLVGPPGTGKTLLAKAIAGEAGTPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCI 269 Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + ND QL ++ +++ A L Sbjct: 270 IFIDEIDAVGRSRGAGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADVLDSAL 329 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211 L+ V + PD +V+ D+ + L I +R Sbjct: 330 ------LRPGRFDRQVSVDPPDIKGRREVLEVHARDK--KVSDDLSLDAIARRTP-GFTG 380 Query: 212 AEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 A L + ++ A+ R A +L+ D Sbjct: 381 A-DLANLLNEAAILTARR--RKEAVTMLEIDDAID 412 >gi|160331747|ref|XP_001712580.1| prsS4 [Hemiselmis andersenii] gi|159766029|gb|ABW98255.1| prsS4 [Hemiselmis andersenii] Length = 409 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL G G+GK+ LA ++++++T F L + ++ E Sbjct: 187 PPKGVILYGEPGTGKTLLAKAVANRTKATFFRIAGSELVQKFLGDGPKLVRE 238 >gi|119512416|ref|ZP_01631499.1| AAA ATPase, central region [Nodularia spumigena CCY9414] gi|119462945|gb|EAW43899.1| AAA ATPase, central region [Nodularia spumigena CCY9414] Length = 611 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 23/48 (47%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 ++L GP G+GK+ LA + ++R+ L S + + + E Sbjct: 394 ILLWGPPGTGKTLLAKAVASQARANFIGINGPDLLSRWVGASEQAVRE 441 Score = 37.4 bits (86), Expect = 1.8, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 44/121 (36%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109 P+ V+LVGPSG+GK+ A +++ + + L +I K Sbjct: 124 PTHGVLLVGPSGTGKTLTARALAEELGVNYIALVGPEVITKYYGEAEQKLRAIFEKAAKN 183 Query: 110 ---PVLLEDIDLLDFNDTQ------------LFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID L + + L +++ Q +L+ A P Sbjct: 184 APCIIFIDEIDSLAPDRSAVEGEVEKRLVAQLLSLMDGFSQNKGVILLGATNRPDHLDPA 243 Query: 155 L 155 L Sbjct: 244 L 244 >gi|14520405|ref|NP_125880.1| proteasome-activating nucleotidase [Pyrococcus abyssi GE5] gi|20532218|sp|Q9V287|PAN_PYRAB RecName: Full=Proteasome-activating nucleotidase; Short=PAN; AltName: Full=Proteasomal ATPase; AltName: Full=Proteasome regulatory ATPase; AltName: Full=Proteasome regulatory particle gi|5457620|emb|CAB49111.1| 26S protease regulatory subunit 4 [Pyrococcus abyssi GE5] Length = 399 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 23/52 (44%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G GK+ +A + + +T + L I ++ E Sbjct: 173 PPKGVLLYGPPGCGKTLMAKALAHEVNATFIRVVGSELVRKYIGEGARLVHE 224 >gi|21911250|ref|NP_665518.1| recombination factor protein RarA [Streptococcus pyogenes MGAS315] gi|28896626|ref|NP_802976.1| recombination factor protein RarA [Streptococcus pyogenes SSI-1] gi|21905463|gb|AAM80321.1| putative chromosome segregation helicase [Streptococcus pyogenes MGAS315] gi|28811880|dbj|BAC64809.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1] Length = 422 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 60/166 (36%), Gaps = 22/166 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKS-------RSTR--FSNIAKSLDSILIDTRKPVLLEDID 117 +IL GP G GK+ +A+ + + +T + + + +LL++I Sbjct: 42 MILYGPPGIGKTSIASAIAGTTKYAFRTFNATIDSKKRLQEIAEEAKFSGGLVLLLDEIH 101 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 LD + +++M T + P + SR + ++ ++ Sbjct: 102 RLDKTKQDFL----LPLLENGTIIMIGATTENPFFSVTPAIRSR---VQIFELEPLSNED 154 Query: 178 LEKVIVKMFAD--RQ----IFIDKKLAAYIVQRMERSLVFAEKLVD 217 ++ I +D R + ID + +IV L A +D Sbjct: 155 IKTAIQLAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLD 200 >gi|15825813|pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant Length = 334 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 6/78 (7%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G GK+ LA+I + + ++ L LE D+L ++ Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI-- 111 Query: 127 FHIINSIHQYDSSLLMTA 144 H +N + LL +A Sbjct: 112 -HRLNKAVEE---LLYSA 125 >gi|116179646|ref|XP_001219672.1| hypothetical protein CHGG_00451 [Chaetomium globosum CBS 148.51] gi|88184748|gb|EAQ92216.1| hypothetical protein CHGG_00451 [Chaetomium globosum CBS 148.51] Length = 834 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 31/50 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S+ST FS A SL S + + ++ Sbjct: 582 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTSKYLGESEKLV 631 >gi|83858523|ref|ZP_00952045.1| ATPase, AAA family protein [Oceanicaulis alexandrii HTCC2633] gi|83853346|gb|EAP91198.1| ATPase, AAA family protein [Oceanicaulis alexandrii HTCC2633] Length = 438 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 49/142 (34%), Gaps = 22/142 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ +A + ++++ F I+ + D +K T L Sbjct: 55 LILWGPPGVGKTTIARLLAERAG-LEFDAISAVFSGVA-DLKKAFDRARARRQAGRGTLL 112 Query: 127 F----HIINSIHQYD---------SSLLMTARTFPV-SWGVCLPDLCSRLKAATVVKISL 172 F H N Q +L+ P L SR V+ + Sbjct: 113 FVDEIHRFNRAQQDGFLPVAEEGIITLVGATTENPSFELNAA---LLSR---CQVMVLKR 166 Query: 173 PDDDFLEKVIVKMFADRQIFID 194 D + LEK++ A+ + Sbjct: 167 LDAEALEKLLRCAEAEEGTTLP 188 >gi|317485616|ref|ZP_07944492.1| ABC transporter [Bilophila wadsworthia 3_1_6] gi|316923153|gb|EFV44363.1| ABC transporter [Bilophila wadsworthia 3_1_6] Length = 671 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 11/76 (14%) Query: 20 QPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWP--------SRVVILVG 71 +P+ K ++L F +P + L V A D WP + + LVG Sbjct: 300 RPEAKRKELSFKWPEPPKADKTILSVAD---LAFAFPDGVSLWPPLTFTIYRGQRIALVG 356 Query: 72 PSGSGKSCLANIWSDK 87 +G GKS L I + + Sbjct: 357 HNGCGKSTLLKILAGR 372 >gi|298484614|ref|ZP_07002719.1| ISPsy4, transposition helper protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160871|gb|EFI01887.1| ISPsy4, transposition helper protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 218 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 41/112 (36%), Gaps = 25/112 (22%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID-------------------T 107 ++ +GPSG GKS LA + ++ + +++ Sbjct: 104 IVFLGPSGVGKSHLAIALAYRAVMAGIKTRFVTAADLMLQLTAAHRQERLKEYFSRVVMA 163 Query: 108 RKPVLLEDIDLLDF--NDTQLFHIINSI--HQYDSSLLMTARTFPVSWGVCL 155 +++++I L F ++ LF N + SL++T+ W L Sbjct: 164 PGLLVIDEIGYLPFGRDEANLF--FNVVAKRYEQGSLILTSNLPFTQWAGTL 213 >gi|259130016|gb|ACV95481.1| non-structural polyprotein [Calicivirus isolate Geel 2008/Belgium] Length = 1930 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 25/49 (51%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLED 115 +IL GP+G GK+ LA + + S + S + ++D T V + D Sbjct: 620 IILTGPAGCGKTTLAYAIASRLSSQKPSVLNLNIDHHDAYTGNEVCIID 668 >gi|260513687|ref|YP_003212822.1| non-structural polyprotein [Calicivirus isolate Allston 2008/US] gi|259130010|gb|ACV95476.1| non-structural polyprotein [Calicivirus isolate Allston 2008/US] Length = 1931 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 25/49 (51%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLED 115 +IL GP+G GK+ LA + + S + S + ++D T V + D Sbjct: 621 IILTGPAGCGKTTLAYAIASRLSSQKPSVLNLNIDHHDAYTGNEVCIID 669 >gi|260513683|ref|YP_003212819.1| non-structural polyprotein [Calicivirus isolate Allston 2009/US] gi|259130006|gb|ACV95473.1| non-structural polyprotein [Calicivirus isolate Allston 2009/US] Length = 1931 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 25/49 (51%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLED 115 +IL GP+G GK+ LA + + S + S + ++D T V + D Sbjct: 621 IILTGPAGCGKTTLAYAIASRLSSQKPSVLNLNIDHHDAYTGNEVCIID 669 >gi|240275902|gb|EER39415.1| chromosome transmission fidelity protein [Ajellomyces capsulatus H143] Length = 939 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRF---SNIAKSLDSILIDTRKPVLLEDIDLLDF 121 +V++L GP G GK+ LA++ + ++ ++ +S D + R V E++ + Sbjct: 263 KVLLLTGPPGLGKTTLAHVCAKQAGYEVLEINASDERSRDVVKGRIRDAVGTENVKGVTM 322 Query: 122 N 122 + Sbjct: 323 D 323 >gi|225574008|ref|ZP_03782653.1| hypothetical protein RUMHYD_02104 [Blautia hydrogenotrophica DSM 10507] gi|225038738|gb|EEG48984.1| hypothetical protein RUMHYD_02104 [Blautia hydrogenotrophica DSM 10507] Length = 617 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 44/139 (31%), Gaps = 44/139 (31%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 +LVGP G+GK+ LA + ++ FS + + Sbjct: 205 ALLVGPPGTGKTLLAKAVAGEANVPFFSISGSEFVEMFVGMGAAKVRDLFKQANEKAPCI 264 Query: 111 VLLEDIDLL--------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW----- 151 V +++ID + ND QL ++ +++ A P S Sbjct: 265 VFIDEIDTIGKKRDGQVGGNDEREQTLNQLLTEMDGFDGSKGVVILAATNRPDSLDPALL 324 Query: 152 ---------GVCLPDLCSR 161 V LPDL R Sbjct: 325 RPGRFDRRIPVELPDLQGR 343 >gi|198285437|gb|ACH85257.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Salmo salar] Length = 387 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + ++ S+ I ++ E Sbjct: 164 PPKGCLLYGPPGTGKTLLARAVASQMDCNFLKVVSSSIVDKYIGESARLIRE-------- 215 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 216 ------MFNYARDHQ 224 >gi|221060877|ref|XP_002262008.1| 26S proteasome regulatory subunit 7 [Plasmodium knowlesi strain H] gi|193811158|emb|CAQ41886.1| 26S proteasome regulatory subunit 7, putative [Plasmodium knowlesi strain H] Length = 441 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 22/144 (15%), Positives = 49/144 (34%), Gaps = 45/144 (31%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V+L GP G+GK+ A ++++ + I L + ++ Sbjct: 195 PPKGVLLYGPPGTGKTLTARAIANRTDACFICVIGSELVQKYVGEGARMVRELFQMAKSK 254 Query: 113 ------LEDIDLLD---FNDTQ---------LFHIINSI----HQYDSSLLMTARTF--- 147 ++++D + +++ + I+N + ++ + +LM Sbjct: 255 KACILFIDEVDAIGGSRGDESAHGDHEVQRTMLEIVNQLDGFDNRGNIKVLMATNRPDTL 314 Query: 148 ------PVS----WGVCLPDLCSR 161 P LPDL R Sbjct: 315 DSALVRPGRIDRKIEFSLPDLEGR 338 >gi|156102703|ref|XP_001617044.1| 26S proteasome ATPase subunit [Plasmodium vivax SaI-1] gi|148805918|gb|EDL47317.1| 26S proteasome ATPase subunit, putative [Plasmodium vivax] Length = 420 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 22/144 (15%), Positives = 49/144 (34%), Gaps = 45/144 (31%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V+L GP G+GK+ A ++++ + I L + ++ Sbjct: 195 PPKGVLLYGPPGTGKTLTARAIANRTDACFICVIGSELVQKYVGEGARMVRELFQMAKSK 254 Query: 113 ------LEDIDLLD---FNDTQ---------LFHIINSI----HQYDSSLLMTARTF--- 147 ++++D + +++ + I+N + ++ + +LM Sbjct: 255 KACILFIDEVDAIGGSRGDESAHGDHEVQRTMLEIVNQLDGFDNRGNIKVLMATNRPDTL 314 Query: 148 ------PVS----WGVCLPDLCSR 161 P LPDL R Sbjct: 315 DSALVRPGRIDRKIEFSLPDLEGR 338 >gi|221135429|ref|ZP_03561732.1| recombination factor protein RarA [Glaciecola sp. HTCC2999] Length = 440 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 14/76 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRF------SNIAKSLDSILIDTRKPVLLEDIDLLD 120 ++L GP G+GK+ LA I + + S + D++ + V + +D + Sbjct: 46 MLLWGPPGTGKTTLAQIIAKHIDANLIVLSAVTSGVKDIRDAMAMTHPGVVTIVFVDEV- 104 Query: 121 FNDTQLFHIINSIHQY 136 H N Q Sbjct: 105 -------HRFNKSQQD 113 >gi|92119343|ref|YP_579072.1| IstB-like ATP-binding protein [Nitrobacter hamburgensis X14] gi|91802237|gb|ABE64612.1| IstB-like ATP-binding protein [Nitrobacter hamburgensis X14] Length = 287 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 48/110 (43%), Gaps = 22/110 (20%) Query: 64 SRVVILVGPSGSGKSCLANIW---SDKSRSTR----FSNIAKSLDSILIDTRKPVLLEDI 116 R V+LVG +G+GKS LA +S + ++ L++ + R+ + E + Sbjct: 98 QRNVVLVGGTGTGKSHLAIAIVRSCIRSGARGRFYNVVDLVNRLETETRNGRQGRIAEHL 157 Query: 117 ---DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 D + ++ LFH+++ +++ +S+++T W Sbjct: 158 TRMDFIVLDELGYLPFAQAGGQLLFHLVSRLYER-TSIVVTTNLAFGEWP 206 >gi|37527728|ref|NP_931073.1| ATP-dependent protease ATP-binding subunit [Photorhabdus luminescens subsp. laumondii TTO1] gi|46576407|sp|Q7N0L4|CLPX_PHOLL RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|36787164|emb|CAE16240.1| ATP-dependent Clp protease ATP-binding subunit [Photorhabdus luminescens subsp. laumondii TTO1] Length = 423 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 49/132 (37%), Gaps = 30/132 (22%) Query: 2 NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55 ++++E+ VP +++N P P + DD ++ Sbjct: 46 DIIREEIKELVPHRERNALPT----------PHEIRQHLDDYVIGQETAKKVLAVAVYNH 95 Query: 56 IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107 + + ++L+GP+GSGK+ LA + R+ ++ ++ T Sbjct: 96 YKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA------RYLDVPFTMADATTLT 149 Query: 108 RKPVLLEDIDLL 119 + ED++ + Sbjct: 150 EAGYVGEDVENI 161 >gi|15825805|pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant Length = 334 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 6/78 (7%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G GK+ LA+I + + ++ L LE D+L ++ Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI-- 111 Query: 127 FHIINSIHQYDSSLLMTA 144 H +N + LL +A Sbjct: 112 -HRLNKAVEE---LLYSA 125 >gi|328873702|gb|EGG22069.1| VCP-like ATPase [Dictyostelium fasciculatum] Length = 780 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 14/32 (43%), Positives = 16/32 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 PS VIL GPSG GK+ L + K S Sbjct: 567 PSSGVILYGPSGCGKTLLVRAAAAKMNVNFIS 598 >gi|327262665|ref|XP_003216144.1| PREDICTED: nuclear valosin-containing protein-like [Anolis carolinensis] Length = 844 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 56/168 (33%), Gaps = 42/168 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P R +L GP G GK+ LA + + A + D + Sbjct: 291 PPRGFLLHGPPGCGKTLLAQAIAGELELPILKVAATEIVSGVSGESEQKLRELFDQAVTS 350 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151 + L++ID + QL + N++ L++ A P S Sbjct: 351 APCLLFLDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNLAGTAQVLVIGATNRPDSL 410 Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKK 196 L +A + + +PD+ EK++ + R++ + + Sbjct: 411 EPALR------RAGRFDREICLGIPDEAAREKILKTLC--RKLRLRES 450 Score = 37.1 bits (85), Expect = 2.3, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 22/46 (47%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 ++L GP G GK+ LA +++S S L ++ + + + Sbjct: 606 ILLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAV 651 >gi|307206357|gb|EFN84409.1| Nuclear valosin-containing protein-like [Harpegnathos saltator] Length = 861 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 23/57 (40%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P R +L GP G GK+ LA+ + + A L + + + + E D Sbjct: 246 PPRGFLLHGPPGCGKTLLAHAVAGELNMPLLKVAAPELIAGVSGESEARIRELFDQA 302 Score = 37.1 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 22/46 (47%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 V+L GP G GK+ LA ++++ S L ++ + + + Sbjct: 604 VLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYVGESEKAV 649 >gi|258513174|ref|YP_003189430.1| transposase [Acetobacter pasteurianus IFO 3283-01] gi|258513239|ref|YP_003189495.1| transposase [Acetobacter pasteurianus IFO 3283-01] gi|256635077|dbj|BAI01051.1| transposase [Acetobacter pasteurianus IFO 3283-01] gi|256635142|dbj|BAI01116.1| transposase [Acetobacter pasteurianus IFO 3283-01] gi|256638132|dbj|BAI04099.1| transposase [Acetobacter pasteurianus IFO 3283-03] gi|256638197|dbj|BAI04164.1| transposase [Acetobacter pasteurianus IFO 3283-03] gi|256641186|dbj|BAI07146.1| transposase [Acetobacter pasteurianus IFO 3283-07] gi|256641251|dbj|BAI07211.1| transposase [Acetobacter pasteurianus IFO 3283-07] gi|256644241|dbj|BAI10194.1| transposase [Acetobacter pasteurianus IFO 3283-22] gi|256644306|dbj|BAI10259.1| transposase [Acetobacter pasteurianus IFO 3283-22] gi|256647296|dbj|BAI13242.1| transposase [Acetobacter pasteurianus IFO 3283-26] gi|256647361|dbj|BAI13307.1| transposase [Acetobacter pasteurianus IFO 3283-26] gi|256650349|dbj|BAI16288.1| transposase [Acetobacter pasteurianus IFO 3283-32] gi|256650414|dbj|BAI16353.1| transposase [Acetobacter pasteurianus IFO 3283-32] gi|256653340|dbj|BAI19272.1| transposase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256653405|dbj|BAI19337.1| transposase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256656393|dbj|BAI22318.1| transposase [Acetobacter pasteurianus IFO 3283-12] gi|256656458|dbj|BAI22383.1| transposase [Acetobacter pasteurianus IFO 3283-12] Length = 257 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 47/108 (43%), Gaps = 23/108 (21%) Query: 67 VILVGPSGSGKSCLANIWS--------DKSRSTRFSNIAKSLDSILIDTRKPVLLE---D 115 V+L+G G+GK+ LA + K+R ++ +L+ R + + Sbjct: 103 VVLIGGPGTGKTHLATALAIQAITHHRKKARFWSTVDLVNALEQEKTANRAGQIADRLLR 162 Query: 116 IDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 +DL+ ++ LFH+++ +++ +S+++T WG Sbjct: 163 LDLVILDELGYLPFSASGGALLFHLLSRLYER-TSVIITTNLSFSEWG 209 >gi|242091720|ref|XP_002436350.1| hypothetical protein SORBIDRAFT_10g000870 [Sorghum bicolor] gi|241914573|gb|EER87717.1| hypothetical protein SORBIDRAFT_10g000870 [Sorghum bicolor] Length = 775 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 25/101 (24%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110 P ++L GP G GK+ LA+ ++++ + A + S + + Sbjct: 229 PVAGLLLHGPPGCGKTTLAHAIANETGVPFYKISAPEVVSGVSGASEENIRGLFQKAYRT 288 Query: 111 ----VLLEDIDLLDFNDTQLFHIINSIHQYDSSL---LMTA 144 V +++ID + N + + + LMT Sbjct: 289 APSIVFIDEIDAIASKRE------NLQREMERRIVTQLMTC 323 >gi|226290677|gb|EEH46161.1| ribosome biogenesis ATPase RIX7 [Paracoccidioides brasiliensis Pb18] Length = 716 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 23/46 (50%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 V+L GP G GK+ LA +++SR+ S L + + + + Sbjct: 492 VLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKFVGESERAV 537 Score = 37.8 bits (87), Expect = 1.4, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 27/57 (47%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P R V+L GP G GK+ +AN ++ + + A S+ S + + L E + Sbjct: 210 PPRGVLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIVSGMSGESEKALREHFEEA 266 >gi|221116355|ref|XP_002163196.1| PREDICTED: similar to predicted protein [Hydra magnipapillata] Length = 745 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 1/48 (2%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110 P V+ L+GP G+GK+ LA + ++ F D + + Sbjct: 343 PGGVL-LIGPPGTGKTLLARAIAGEADVPFFFASGSEFDEMFVGVGAA 389 >gi|186489959|ref|NP_001117460.1| ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding [Arabidopsis thaliana] gi|332194398|gb|AEE32519.1| P-loop containing NTPase domain-containing protein [Arabidopsis thaliana] Length = 981 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 22/40 (55%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P + ++L GP G+GK+ LA + ++ + S +L S Sbjct: 726 PCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS 765 >gi|86357338|ref|YP_469230.1| recombination factor protein RarA [Rhizobium etli CFN 42] gi|86281440|gb|ABC90503.1| putative ATPase associated with chromosome architecture/replication protein [Rhizobium etli CFN 42] Length = 438 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 71/201 (35%), Gaps = 31/201 (15%) Query: 54 RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPV 111 R+I+ S +I GP G+GK+ +A + S ++ + S I + + Sbjct: 47 RMIE---SGSLGSMIFWGPPGTGKTTVARLLSGEAGLAFEQISAIFSGVADLKKVFEAA- 102 Query: 112 LLEDIDLLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPD 157 + +D T LF H N + + +L+ T Sbjct: 103 ---RMRRMDGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVILVGATTENPSFELNAA--- 156 Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVK--MFADRQIFIDKKLAAYIVQRMERSLVFAEKL 215 L SR A V+ D++ LE+++ + R + + + A +++ + L Sbjct: 157 LLSR---ARVLTFKSHDEESLEELLTRAEAIEQRPLPLTGEARASLIRMADGDGRAVLTL 213 Query: 216 VDKMDNLALSRGMGITRSLAA 236 +++ A T +L Sbjct: 214 AEEVWRAAREGESFDTEALTR 234 >gi|16125532|ref|NP_420096.1| recombination factor protein RarA [Caulobacter crescentus CB15] gi|221234279|ref|YP_002516715.1| recombination factor protein RarA [Caulobacter crescentus NA1000] gi|13422618|gb|AAK23264.1| ATPase, AAA family [Caulobacter crescentus CB15] gi|220963451|gb|ACL94807.1| ATPase, AAA family [Caulobacter crescentus NA1000] Length = 433 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 6/75 (8%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G+GK+ +A + + K+ F I+ + D +K + T L Sbjct: 55 MILWGPPGTGKTTIARLLA-KAGGYEFMQISAVFSGVA-DLKKAFEQARARRMAGQSTLL 112 Query: 127 F----HIINSIHQYD 137 F H N Q Sbjct: 113 FVDEIHRFNRAQQDG 127 >gi|116753926|ref|YP_843044.1| AAA family ATPase, CDC48 subfamily protein [Methanosaeta thermophila PT] gi|116665377|gb|ABK14404.1| AAA family ATPase, CDC48 subfamily [Methanosaeta thermophila PT] Length = 721 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 46/121 (38%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTRKP 110 P + V+L GP G+GK+ +A + ++ +T + + L I D +K Sbjct: 208 PPKGVLLHGPPGTGKTLIARAVASETDATFTAISGPEIMSRYYGESEQRLRQIFEDAQKS 267 Query: 111 ----VLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + +++ A P + Sbjct: 268 APSIIFIDEIDSIAPKREEVLGDLERRVVAQLLSLMDGLTSRGEVIVIAATNRPNALDPA 327 Query: 155 L 155 L Sbjct: 328 L 328 >gi|159112079|ref|XP_001706269.1| 26S proteasome ATPase subunit S4, putative [Giardia lamblia ATCC 50803] gi|157434364|gb|EDO78595.1| 26S proteasome ATPase subunit S4, putative [Giardia lamblia ATCC 50803] gi|158440755|gb|ABW38702.1| 26S proteasome ATPase subunit S4 [Giardia intestinalis] gi|158440798|gb|ABW38708.1| 26S proteasome ATPase subunit S4 [Giardia intestinalis] gi|158441093|gb|ABW38714.1| 26S proteasome ATPase subunit S4 [Giardia intestinalis] gi|158441236|gb|ABW38720.1| 26S proteasome ATPase subunit S4 [Giardia intestinalis] Length = 447 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 48/144 (33%), Gaps = 45/144 (31%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRS-----------TRFSNIAKSLDSILIDTRKP- 110 P R IL GPSG+GKS LA ++++ + ++S L L K Sbjct: 226 PPRSCILHGPSGTGKSLLARACANETSACYMKMAGSELIQKYSGEGPRLVRELFKAAKAN 285 Query: 111 ----VLLE----------DIDLLDFNDTQ--LFHIINSI----HQYDSSLLMT------- 143 + ++ D D + Q + ++N + ++M Sbjct: 286 QPTIIFIDEVDAVGRKRYDADSGGAREIQRTMLELLNQLDGFDRTEGVKVIMATNLIESL 345 Query: 144 ------ARTFPVSWGVCLPDLCSR 161 A V LPDL +R Sbjct: 346 DSALIRAGRIDRKIYVGLPDLTAR 369 >gi|332812092|ref|XP_514229.3| PREDICTED: LOW QUALITY PROTEIN: nuclear VCP-like [Pan troglodytes] Length = 860 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 12/33 (36%), Positives = 17/33 (51%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN 95 P R V+L GP G GK+ LA+ + S + Sbjct: 297 PPRGVLLHGPPGCGKTLLAHAIAGAECSGMITA 329 Score = 37.8 bits (87), Expect = 1.4, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 43/143 (30%), Gaps = 16/143 (11%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTR--FSNIAKSLD-SILIDTRKPVLLEDIDLL 119 P+ V+ L GP G GK+ LA + R+ R F S I D + D Sbjct: 640 PAGVL-LAGPPGCGKTLLAKYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRE 698 Query: 120 DFND----TQLFHIINSIHQYDSSLLMTARTFPVSWG--VCLPDLCSRLKAATVVKISLP 173 QL ++ + +M A P + P RL V + P Sbjct: 699 TGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRP---GRLDKTLFVGLPPP 755 Query: 174 DDDFLEKVIVKMFADRQIFIDKK 196 D I+K Sbjct: 756 ADRL---AILKTITKNGTKPPLD 775 >gi|331697055|ref|YP_004333294.1| IstB domain-containing protein ATP-binding protein [Pseudonocardia dioxanivorans CB1190] gi|326951744|gb|AEA25441.1| IstB domain protein ATP-binding protein [Pseudonocardia dioxanivorans CB1190] Length = 255 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 48/124 (38%), Gaps = 32/124 (25%) Query: 51 QAVRLIDSWPSWPSRVVILVGPSGSGKSCLA--------------------NIWSDKSRS 90 A+R +D+ VIL GP G GK+ +A + ++ + Sbjct: 92 AALRWLDA-----GESVILTGPVGVGKTFVAQALGHQAIRHGADVRFAKTSRVLAELAGG 146 Query: 91 TRFSNIAKSLDSILIDTRKPVLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTARTF 147 + A+ L + ++L+D +L L+ +IN + SL++T+ Sbjct: 147 HADHSWARRLRELARPAV--LILDDFGMRELTAAQADDLYELIN--ERAGRSLVLTSNRS 202 Query: 148 PVSW 151 PV W Sbjct: 203 PVDW 206 >gi|302812777|ref|XP_002988075.1| hypothetical protein SELMODRAFT_426754 [Selaginella moellendorffii] gi|300144181|gb|EFJ10867.1| hypothetical protein SELMODRAFT_426754 [Selaginella moellendorffii] Length = 440 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 45/141 (31%), Gaps = 42/141 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN----------------IAKSLDSILID 106 P R +L GP G+GKS LA + ++ ST +S +A Sbjct: 166 PWRAFLLYGPPGTGKSYLAKAVATEADSTFYSISSSDLVSKWMGESEKLVANLFQMARDS 225 Query: 107 TRKPVLLEDIDLLDFND--------------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 + +++ID L L + + L++ A P S Sbjct: 226 APSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYSLD 285 Query: 153 ------------VCLPDLCSR 161 + LPDL +R Sbjct: 286 HAVRRRFDKRIYIPLPDLKAR 306 >gi|289613840|emb|CBI59323.1| unnamed protein product [Sordaria macrospora] Length = 902 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 31/50 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S+ST FS A SL S + + ++ Sbjct: 610 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTSKYLGESEKLV 659 >gi|255939672|ref|XP_002560605.1| Pc16g02330 [Penicillium chrysogenum Wisconsin 54-1255] gi|211585228|emb|CAP92903.1| Pc16g02330 [Penicillium chrysogenum Wisconsin 54-1255] Length = 727 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 23/46 (50%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 V+L GP G GK+ LA +++SR+ S L + + + + Sbjct: 504 VLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKFVGESERAV 549 Score = 38.2 bits (88), Expect = 1.2, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P R V+L GP G GK+ +AN ++ + S A S+ S + + L E Sbjct: 194 PPRGVLLHGPPGCGKTLIANAFAAELGVPFISISAPSVVSGMSGESEKALRE 245 >gi|260803780|ref|XP_002596767.1| hypothetical protein BRAFLDRAFT_114160 [Branchiostoma floridae] gi|229282027|gb|EEN52779.1| hypothetical protein BRAFLDRAFT_114160 [Branchiostoma floridae] Length = 392 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + + ++ ++ I ++ E Sbjct: 169 PPKGVLLYGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARLIRE 220 >gi|168019251|ref|XP_001762158.1| predicted protein [Physcomitrella patens subsp. patens] gi|162686562|gb|EDQ72950.1| predicted protein [Physcomitrella patens subsp. patens] Length = 513 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 33/74 (44%), Gaps = 16/74 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSR------------STRFSNIAKSLDSILIDTRKP 110 P R ++L GP G+GKS LA + ++ S + ++L ++ + Sbjct: 37 PHRGILLYGPPGTGKSTLARAAACEAGVPLFAINGPDVVSQFYGESEEALRAVFTAAEEA 96 Query: 111 ----VLLEDIDLLD 120 V+++++D + Sbjct: 97 APSVVVIDEVDAIA 110 Score = 35.5 bits (81), Expect = 6.0, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 17/38 (44%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P R V+L GP G K+ LA + ++ + L Sbjct: 305 PIRGVLLYGPPGCSKTLLARACASEAGLNFIAVKGPEL 342 >gi|148656011|ref|YP_001276216.1| ATPase central domain-containing protein [Roseiflexus sp. RS-1] gi|148568121|gb|ABQ90266.1| AAA ATPase, central domain protein [Roseiflexus sp. RS-1] Length = 458 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 5/78 (6%) Query: 54 RLIDS--WPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV 111 R++D + +R + L GP G+GK+ +A ++ A +D +I P+ Sbjct: 164 RMLDRIGPAANSARSLFLYGPPGNGKTTIAEGIANMLGGHVLIPYAVEVDGQIIKVFDPL 223 Query: 112 ---LLEDIDLLDFNDTQL 126 L+E + + Sbjct: 224 NHQLIEQPATAAAREPAV 241 >gi|94501620|ref|ZP_01308137.1| chromosomal replication initiation protein [Oceanobacter sp. RED65] gi|94426303|gb|EAT11294.1| chromosomal replication initiation protein [Oceanobacter sp. RED65] Length = 216 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 7/50 (14%), Positives = 16/50 (32%), Gaps = 3/50 (6%) Query: 37 GISRDDLLVHSAIEQAVRL---IDSWPSWPSRVVILVGPSGSGKSCLANI 83 + D + + + A + + + G G GK+ L + Sbjct: 159 RFTFDTFVEGKSNQLAHAAAQQVSQNAGGSYNPLFIYGGVGLGKTHLMHA 208 >gi|71665863|ref|XP_819897.1| mitochondrial ATP-dependent zinc metallopeptidase [Trypanosoma cruzi strain CL Brener] gi|70885218|gb|EAN98046.1| mitochondrial ATP-dependent zinc metallopeptidase, putative [Trypanosoma cruzi] Length = 657 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 56/155 (36%), Gaps = 37/155 (23%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTR----------------KP 110 +LVGP G GK+ LA + ++ F D + + Sbjct: 222 ALLVGPPGCGKTMLAKAIAKEAGVNFFYATGSEFDEMYVGVGSRRVRELFAAAKANSPAL 281 Query: 111 VLLEDIDLLDFNDTQLFHII-----NSIHQY-------DSSLLMTARTFPVSWGVCLPDL 158 + +++ID L ++ H N + +S +++ A P + L Sbjct: 282 IFIDEIDALGGKRSRTDHAYSRMTLNQLLAEMDGFSSKESIIVLAATNTPDALDKAL--- 338 Query: 159 CSRL-KAATVVKISLPD----DDFLEKVIVKMFAD 188 +R + T + + PD ++ LE + K+ AD Sbjct: 339 -TRPGRFDTTISVDPPDMKGREEVLEVYLNKVKAD 372 >gi|254181008|ref|ZP_04887606.1| ATPase, AAA family [Burkholderia pseudomallei 1655] gi|184211547|gb|EDU08590.1| ATPase, AAA family [Burkholderia pseudomallei 1655] Length = 436 Score = 40.1 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 61/173 (35%), Gaps = 28/173 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA + + + A I + ++ + T L Sbjct: 50 MILWGPPGVGKTTLARLTALAFDCEFIALSAVLGGVKDIREAMEQARDTLNRTGRH-TIL 108 Query: 127 F----HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 F H N Q +LL + A T S+ V L SR A V + Sbjct: 109 FVDEIHRFNKAQQD--ALLPFVESGLVTFIGATTENPSFEVNSA-LLSR---AQVYVLKS 162 Query: 173 PDDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 +D L +++ K D + D K +V + A + ++ ++ Sbjct: 163 LAEDELRQLL-KRAQDVALGGLAFDDKAVDTLVGYAD---GDARRFLNLLEQA 211 >gi|167760075|ref|ZP_02432202.1| hypothetical protein CLOSCI_02447 [Clostridium scindens ATCC 35704] gi|167662368|gb|EDS06498.1| hypothetical protein CLOSCI_02447 [Clostridium scindens ATCC 35704] Length = 245 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 44/113 (38%), Gaps = 24/113 (21%) Query: 69 LVGPSGSGKSCLANIWSDKSRSTR----FSNIAKSLDSILIDTRK--------------- 109 + G +G+GKS + ++ F + + LD +++ R+ Sbjct: 107 IYGVTGAGKSYFLSACCVEACRRNYRCKFVDYSDLLDELIVLNRQEDLNKYRKRIRYYAR 166 Query: 110 --PVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 + ++D + +++ L+H+I +S L T + P WG L D Sbjct: 167 IQLLFIDDFAISRYSEEGIKILYHLIKLRDDLGTSTLFTCQYSPDEWGNQLSD 219 >gi|153008044|ref|YP_001369259.1| ATP-binding domain-containing protein IstB [Ochrobactrum anthropi ATCC 49188] gi|151559932|gb|ABS13430.1| IstB domain protein ATP-binding protein [Ochrobactrum anthropi ATCC 49188] Length = 258 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 20/111 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS-------TRFSNIAKSLDSILIDTRKP--------- 110 +I+ G +G+GKS LA ++ R + + L +D R P Sbjct: 103 LIVCGKTGTGKSWLACALGRQAARHDHSVLYVRAPRLFEDLAMAKLDGRYPRLMNRLMKV 162 Query: 111 --VLLEDIDLLDFNDTQLFHIINSIHQ--YDSSLLMTARTFPVSWGVCLPD 157 ++L+D ++ Q FH+ I + S L+TA+ +W + D Sbjct: 163 QLLILDDFATHVLSEQQRFHLFEIIEERYQRRSTLITAQVPVNAWHDLIAD 213 >gi|84489226|ref|YP_447458.1| replication factor C large subunit [Methanosphaera stadtmanae DSM 3091] gi|110287810|sp|Q2NH88|RFCL_METST RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|84372545|gb|ABC56815.1| RfcL [Methanosphaera stadtmanae DSM 3091] Length = 534 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 40/100 (40%), Gaps = 19/100 (19%) Query: 48 AIEQAVRLIDSWPS-W----PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 +A I+ W + W P + ++L+GP G GK+ +A++ + +++++ Sbjct: 17 GNAKAKAQIEVWANKWSKGVPQKPLLLMGPPGIGKTTIAHLVGKEY-------FSETIEV 69 Query: 103 ILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLM 142 D R +++ LFH LL+ Sbjct: 70 NASDKRSYDIIKSSIGEAAQTRSLFH-------SGYKLLI 102 >gi|72384659|gb|AAZ67621.1| chromosomal replication initiator protein putative [Haemophilus parasuis 29755] Length = 204 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 16/47 (34%), Gaps = 3/47 (6%) Query: 40 RDDLLVHSAIE---QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI 83 D ++ A + P+ + + G G GK+ L + Sbjct: 120 FDTFVIGPGNRFPHAASLAVAEAPAEAYNPLFIYGGVGLGKTHLMHA 166 >gi|24987363|pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii Length = 318 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 27/193 (13%), Positives = 74/193 (38%), Gaps = 29/193 (15%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLL 113 P ++L GP G GK+ LA++ + + + ++ + ++ + + Sbjct: 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLEEGDILFI 96 Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD---------------- 157 ++I L + H+ ++ + +++ + + LP Sbjct: 97 DEIHRLSRQAEE--HLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAP 154 Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 L SR ++ P++ L + +++ + I ++ A I +R ++ A++L Sbjct: 155 LLSRFGIVEHLEYYTPEE--LAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFR 212 Query: 218 KMDNLALSRGMGI 230 ++ + A G + Sbjct: 213 RVRDFAQVAGEEV 225 >gi|13399857|pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8 gi|13399858|pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8 Length = 324 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 27/193 (13%), Positives = 74/193 (38%), Gaps = 29/193 (15%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLL 113 P ++L GP G GK+ LA++ + + + ++ + ++ + + Sbjct: 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLEEGDILFI 96 Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD---------------- 157 ++I L + H+ ++ + +++ + + LP Sbjct: 97 DEIHRLSRQAEE--HLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAP 154 Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 L SR ++ P++ L + +++ + I ++ A I +R ++ A++L Sbjct: 155 LLSRFGIVEHLEYYTPEE--LAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFR 212 Query: 218 KMDNLALSRGMGI 230 ++ + A G + Sbjct: 213 RVRDFAQVAGEEV 225 >gi|15644476|ref|NP_229528.1| Holliday junction DNA helicase RuvB [Thermotoga maritima MSB8] gi|2498878|sp|Q56313|RUVB_THEMA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|15825804|pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch Migration Motor gi|4982307|gb|AAD36795.1|AE001812_5 Holliday junction DNA helicase [Thermotoga maritima MSB8] gi|1063668|gb|AAB03727.1| RuvB protein [Thermotoga maritima] Length = 334 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 6/78 (7%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G GK+ LA+I + + ++ L LE D+L ++ Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI-- 111 Query: 127 FHIINSIHQYDSSLLMTA 144 H +N + LL +A Sbjct: 112 -HRLNKAVEE---LLYSA 125 >gi|325093265|gb|EGC46575.1| chromosome transmission fidelity protein [Ajellomyces capsulatus H88] Length = 948 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRF---SNIAKSLDSILIDTRKPVLLEDIDLLDF 121 +V++L GP G GK+ LA++ + ++ ++ +S D + R V E++ + Sbjct: 263 KVLLLTGPPGLGKTTLAHVCAKQAGYEVLEINASDERSRDVVKGRIRDAVGTENVKGVTM 322 Query: 122 N 122 + Sbjct: 323 D 323 >gi|298242539|ref|ZP_06966346.1| AAA family ATPase, CDC48 subfamily [Ktedonobacter racemifer DSM 44963] gi|297555593|gb|EFH89457.1| AAA family ATPase, CDC48 subfamily [Ktedonobacter racemifer DSM 44963] Length = 893 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 37/200 (18%), Positives = 67/200 (33%), Gaps = 46/200 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106 P R V+L GP GSGK+ +A +++ + S + + Sbjct: 562 PPRGVLLAGPPGSGKTLIARALANQCEANFISIKGPELLSKWVGESEKGVREVFRRAKQA 621 Query: 107 TRKPVLLEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWG- 152 V ++ID L QL ++ I + +++ A P Sbjct: 622 APCLVFFDEIDALAPRRGSGMDGNVGDRLIAQLLTEMDGIEGREGVIVLAATNRPELIDP 681 Query: 153 -VCLP---DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME-- 206 + P DL VV++ P++D + R I ++ + + R+ Sbjct: 682 AILRPGRFDL--------VVELRYPNEDERRMIFDVHL--RGRPIASEVTSEELARLTDG 731 Query: 207 RSLVFAEKLVDKMDNLALSR 226 RS E + + LAL Sbjct: 732 RSGADIEAICRRAALLALRE 751 Score = 39.0 bits (90), Expect = 0.61, Method: Composition-based stats. Identities = 18/117 (15%), Positives = 41/117 (35%), Gaps = 28/117 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + V+L GP G+GK+ +A + + ++ + F S + Sbjct: 289 PPKGVLLYGPPGTGKTLIARVVAAETNAAFFVINGPEIINKFYGESESRLRSVFQEAQRQ 348 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW 151 + ++++D L QL +++ + +L+ A P + Sbjct: 349 APSIIFIDELDALAPKRAESGGEVERRIVGQLLALMDGLASRGQIVLIGATNQPNAL 405 >gi|294141767|ref|YP_003557745.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella violacea DSS12] gi|293328236|dbj|BAJ02967.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Shewanella violacea DSS12] Length = 418 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 41/111 (36%), Gaps = 22/111 (19%) Query: 24 KEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRLIDSWPSWPSRV---------VI 68 K++Q P L DD ++ + + ++ Sbjct: 52 KQDQDKLPTPHELRAHLDDYVIGQEKAKKVLSVAVYNHYKRLKN-SNPKDGVELGKSNIL 110 Query: 69 LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 L+GP+GSGK+ LA ++ RF ++ ++ T + ED++ + Sbjct: 111 LIGPTGSGKTLLAETFA------RFLDVPFTMADATTLTEAGYVGEDVENI 155 >gi|225561602|gb|EEH09882.1| cell division control protein [Ajellomyces capsulatus G186AR] Length = 751 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 51/117 (43%), Gaps = 29/117 (24%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 253 PPRGILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 312 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW 151 + + +++ID + N QL + + + ++L+M A P+SW Sbjct: 313 SPAIIFIDEIDSIAPNRDKTNGEVERLVVSQLLTLKDGMKARFNALVMAA-PPPISW 368 >gi|225455284|ref|XP_002271615.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 867 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 24/143 (16%), Positives = 46/143 (32%), Gaps = 37/143 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN----------------IAKSLDSILID 106 P + V+L GP G+GK+ LA + +S + + +A Sbjct: 115 PQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKL 174 Query: 107 TRKPVLLEDIDLLDFNDT---------------QLFHIINSIHQYDSSLLMTARTFPVSW 151 + ++++D L+ + Q +++ A P Sbjct: 175 QPAIIFIDEVDTFLGQRRTTDHEAMANMKTEFMALWDGF-TTDQNARVMVLAATNRPSEL 233 Query: 152 GVCLPDLCSRLKAATVVKISLPD 174 + L RL A +I +PD Sbjct: 234 DEAI--LR-RLPQA--FEIGIPD 251 >gi|260812674|ref|XP_002601045.1| hypothetical protein BRAFLDRAFT_242422 [Branchiostoma floridae] gi|229286336|gb|EEN57057.1| hypothetical protein BRAFLDRAFT_242422 [Branchiostoma floridae] Length = 665 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 28/50 (56%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P + ++L GP G+GK+ + + +S +T FS A SL S + + ++ Sbjct: 423 PPKGLLLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKLV 472 >gi|198415591|ref|XP_002129627.1| PREDICTED: similar to GJ15827 [Ciona intestinalis] Length = 388 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA S + + ++ S+ I ++ E Sbjct: 165 PPKGCLLYGPPGTGKTLLARAVSSQLDANFLKVVSSSIVDKYIGESARLIRE-------- 216 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 217 ------MFNYARDHQ 225 >gi|226504612|ref|NP_001142062.1| hypothetical protein LOC100274218 [Zea mays] gi|194706964|gb|ACF87566.1| unknown [Zea mays] Length = 359 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + E D Sbjct: 66 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 122 >gi|115911530|ref|XP_783737.2| PREDICTED: similar to fidgetin-like 1 [Strongylocentrotus purpuratus] gi|115955183|ref|XP_001188077.1| PREDICTED: similar to fidgetin-like 1 [Strongylocentrotus purpuratus] Length = 603 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 16/82 (19%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDS---WP----------SWPSRVVILVGPSGSGKSCL 80 I DD+ + +E A + I WP P + ++L GP G+GK+ + Sbjct: 321 HGPPIHWDDI---AGLEFAKKTIKEIVVWPMLRPDIFTGLRGPPKGLLLFGPPGTGKTLI 377 Query: 81 ANIWSDKSRSTRFSNIAKSLDS 102 + +S +T FS A SL S Sbjct: 378 GKCIASQSGATFFSISASSLTS 399 >gi|15825807|pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a Length = 334 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 6/78 (7%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G GK+ LA+I + + ++ L LE D+L ++ Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI-- 111 Query: 127 FHIINSIHQYDSSLLMTA 144 H +N + LL +A Sbjct: 112 -HRLNKAVEE---LLYSA 125 >gi|11559311|dbj|BAB18863.1| Ras like G protein Rad [Cynops pyrrhogaster] Length = 302 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 28/62 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P VIL+G G GKSCLA I+ S + D ++ + L D+ + + Sbjct: 84 PVYKVILLGEHGVGKSCLARIFGGIEDSHDIEEAGNTYDRSVVVDGEEACLLVFDIWEQD 143 Query: 123 DT 124 +T Sbjct: 144 ET 145 >gi|313888858|ref|ZP_07822518.1| cell division protease FtsH [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845031|gb|EFR32432.1| cell division protease FtsH [Peptoniphilus harei ACS-146-V-Sch2b] Length = 634 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 45/140 (32%), Gaps = 45/140 (32%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 +LVGP G+GK+ LA + ++ FS + + + Sbjct: 205 ALLVGPPGTGKTLLAKAVASEAEVPFFSISGSAFVEMFVGLGAAKVRDLFKQAVEKAPCI 264 Query: 111 VLLEDIDLLD---------FNDT------QLFHIINSIHQYDSSLLMTARTFPVSW---- 151 + +++ID + ND QL ++ +++ A P S Sbjct: 265 IFIDEIDTIGKKRDGSGFSGNDEREQTLNQLLSEMDGFDAKAGVVILAATNRPDSLDPAL 324 Query: 152 ----------GVCLPDLCSR 161 V LPDL R Sbjct: 325 LRPGRFDRRIPVELPDLKGR 344 >gi|312218275|emb|CBX98221.1| hypothetical protein [Leptosphaeria maculans] Length = 803 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 11/67 (16%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P+R ++L GP G+GK+ LA + +S+ST F+ A SL S + + ++ Sbjct: 548 PARGMLLFGPPGTGKTMLARAVATESKSTFFAISASSLTSKFLGESEKLV---------- 597 Query: 123 DTQLFHI 129 LF + Sbjct: 598 -RALFQL 603 >gi|309790742|ref|ZP_07685291.1| ATP-dependent metalloprotease FtsH [Oscillochloris trichoides DG6] gi|308227233|gb|EFO80912.1| ATP-dependent metalloprotease FtsH [Oscillochloris trichoides DG6] Length = 653 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 14/78 (17%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 R V+LVGP G+GK+ LA + ++ FS A + + + + Sbjct: 212 RGVLLVGPPGTGKTLLAKAVAGEAGVPFFSTSASEFVELFVGVGASRVRD---------- 261 Query: 125 QLFHIINSIHQYDSSLLM 142 + N + +++ Sbjct: 262 ----LFNQARRNGPAIVF 275 >gi|227821784|ref|YP_002825754.1| recombination factor protein RarA [Sinorhizobium fredii NGR234] gi|227340783|gb|ACP25001.1| ATPase, AAA family protein [Sinorhizobium fredii NGR234] Length = 436 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 59/182 (32%), Gaps = 28/182 (15%) Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDID 117 S +I GP G+GK+ +A + S ++ + S I + + Sbjct: 49 ASGSLGSMIFWGPPGTGKTTVARLLSGEAGLAFEQISAIFSGVADLKKVFESA----RAR 104 Query: 118 LLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLK 163 + T LF H N + + +L+ T L SR Sbjct: 105 RMSGRQTLLFVDEIHRFNRAQQDSFLPVMENGTVILVGATTENPSFELNAA---LLSR-- 159 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 A V+ D+ LE+++ + + +D +++ + L +++ Sbjct: 160 -ARVLTFKAHDEASLEELLTRAEQAEGKPLPLDADARGSLIRMADGDGRAVLTLAEEVWR 218 Query: 222 LA 223 A Sbjct: 219 AA 220 >gi|225563313|gb|EEH11592.1| chromosome transmission fidelity protein [Ajellomyces capsulatus G186AR] Length = 948 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRF---SNIAKSLDSILIDTRKPVLLEDIDLLDF 121 +V++L GP G GK+ LA++ + ++ ++ +S D + R V E++ + Sbjct: 263 KVLLLTGPPGLGKTTLAHVCAKQAGYEVLEINASDERSRDVVKGRIRDAVGTENVKGVTM 322 Query: 122 N 122 + Sbjct: 323 D 323 >gi|209736078|gb|ACI68908.1| 26S protease regulatory subunit 4 [Salmo salar] Length = 440 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 28/208 (13%), Positives = 67/208 (32%), Gaps = 49/208 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + VIL G G+GK+ LA ++++ +T + L + ++ Sbjct: 218 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEH 277 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTART---- 146 +++ID + L ++N + + D ++M Sbjct: 278 APSIVFIDEIDAIGTKRYDSNSGGEREIQRTLLELLNQLDGFDSRGDVKVIMATNRIETL 337 Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA--AYIVQR 204 P D ++ LPD+ ++ + + + + I+ + Sbjct: 338 DPALIRPGRIDRK--------IEFPLPDEKTKRRIFQIHTSR--MTVADDVTLDELILAK 387 Query: 205 MERSLVFAEKLVDKMDNLALSRGM-GIT 231 + S + + + +AL +T Sbjct: 388 DDLSGADIKAICTEAGLMALRERRMKVT 415 >gi|154281879|ref|XP_001541752.1| predicted protein [Ajellomyces capsulatus NAm1] gi|150411931|gb|EDN07319.1| predicted protein [Ajellomyces capsulatus NAm1] Length = 982 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRF---SNIAKSLDSILIDTRKPVLLEDIDLLDF 121 +V++L GP G GK+ LA++ + ++ ++ +S D + R V E++ + Sbjct: 297 KVLLLTGPPGLGKTTLAHVCAKQAGYEVLEINASDERSRDVVKGRIRDAVGTENVKGVTM 356 Query: 122 N 122 + Sbjct: 357 D 357 >gi|149622137|ref|XP_001521658.1| PREDICTED: similar to conserved ATPase domain protein 44, partial [Ornithorhynchus anatinus] Length = 400 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + ++ S+ I ++ E Sbjct: 177 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 228 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 229 ------MFNYARDHQ 237 >gi|144897904|emb|CAM74768.1| ATP-dependent Zn proteases [Magnetospirillum gryphiswaldense MSR-1] Length = 642 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 33/203 (16%), Positives = 67/203 (33%), Gaps = 47/203 (23%) Query: 68 ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP----------------V 111 +LVGP G+GK+ LA + ++ F+ + + + Sbjct: 194 LLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEMFVGVGASRVRDMFEQGKKNAPCII 253 Query: 112 LLEDIDLLDF----------NDTQLFHIINSIH-------QYDSSLLMTARTFPVSWGVC 154 +++ID + ++ + +N + + +L+ A P Sbjct: 254 FIDEIDAVGRHRGAGLGGGNDERE--QTLNQMLVEMDGFESNEGVILIAATNRPDVLDPA 311 Query: 155 LPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213 L L R VV PD EK++ R++ + + I+ R A Sbjct: 312 L--LRPGRFDRQIVV--PNPDILGREKILKVHM--RKVPLAPDVEPRIIARGTPGFSGA- 364 Query: 214 KLVDKMDNLAL----SRGMGITR 232 L + ++ AL + +T Sbjct: 365 DLANLVNEAALLAARAGKRVVTM 387 >gi|134117618|ref|XP_772580.1| hypothetical protein CNBL0580 [Cryptococcus neoformans var. neoformans B-3501A] gi|50255195|gb|EAL17933.1| hypothetical protein CNBL0580 [Cryptococcus neoformans var. neoformans B-3501A] Length = 626 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 50/148 (33%), Gaps = 24/148 (16%) Query: 68 ILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSI------------LIDTRKPVLL 113 IL GP G GK+ LA + + S + S + + + R +++ Sbjct: 180 ILWGPPGCGKTTLARLIAKSSGADFKELSATSSGTQDVRQVFEKAKNGLQMTGRRTVLMI 239 Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 ++I + L + L+ A T S+ V L SR V + Sbjct: 240 DEIHRFNRAQQDLLLPY---VEKGWIQLIGATTENPSFKVNGA-LLSR---CQVFTLHAH 292 Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAAYI 201 + L+ ++ Q + + Y+ Sbjct: 293 SPESLQIILRNAV---QTISESEPIPYL 317 >gi|322707976|gb|EFY99553.1| AAA family ATPase [Metarhizium anisopliae ARSEF 23] Length = 809 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 31/50 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S+ST FS A SL S + + ++ Sbjct: 553 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTSKYLGESEKLV 602 >gi|307129928|ref|YP_003881944.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Dickeya dadantii 3937] gi|306527457|gb|ADM97387.1| ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease [Dickeya dadantii 3937] Length = 424 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 48/132 (36%), Gaps = 30/132 (22%) Query: 2 NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55 ++++E+ P ++++ P P + DD ++ Sbjct: 46 DIIREEIKEVAPHRERSALPT----------PHEIRRHLDDYVIGQEQAKKVLAVAVYNH 95 Query: 56 IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107 + S ++L+GP+GSGK+ LA + RF ++ ++ T Sbjct: 96 YKRLRNGDSNNSIELGKSNILLIGPTGSGKTLLAETLA------RFLDVPFTMADATTLT 149 Query: 108 RKPVLLEDIDLL 119 + ED++ + Sbjct: 150 EAGYVGEDVENI 161 >gi|302830037|ref|XP_002946585.1| 26S proteasome regulatory complex [Volvox carteri f. nagariensis] gi|300268331|gb|EFJ52512.1| 26S proteasome regulatory complex [Volvox carteri f. nagariensis] Length = 428 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ +A + ++ + L + I ++ + Sbjct: 208 PPKGVLLYGPPGTGKTLIARAVAAQTNAAFLKLAGPQLVQMFIGDGAKMVRD 259 >gi|225871301|ref|YP_002747248.1| ATPase [Streptococcus equi subsp. equi 4047] gi|225700705|emb|CAW95315.1| putative ATPase [Streptococcus equi subsp. equi 4047] Length = 423 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 63/166 (37%), Gaps = 22/166 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKS-------RSTR--FSNIAKSLDSILIDTRKPVLLEDID 117 +IL GP G GK+ +A+ + + +T + + + +LL++I Sbjct: 42 MILYGPPGIGKTSIASAIAGTTKYAFRTFNATIDNKKRLQEIAEEAKFSGGLVLLLDEIH 101 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 LD + + ++ +++ A T + V P + SR + ++ + Sbjct: 102 RLDKSKQDFLLP---LLEHGHIIMIGATTGNPFFSVT-PAIRSR---VQIFELEPLSPEE 154 Query: 178 LEKVIVKMFAD--RQ----IFIDKKLAAYIVQRMERSLVFAEKLVD 217 +++ + D R + +D+ +I L A + +D Sbjct: 155 IKQALKLAITDKERGFAFDVTLDEAAFDFIATATNGDLRAAYQSLD 200 >gi|255541358|ref|XP_002511743.1| Spastin, putative [Ricinus communis] gi|223548923|gb|EEF50412.1| Spastin, putative [Ricinus communis] Length = 518 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 30/50 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S +T F+ A SL S + + ++ Sbjct: 278 PARGLLLFGPPGNGKTMLAKAVASESEATFFNVSASSLTSKWVGEGEKLV 327 >gi|218295885|ref|ZP_03496665.1| AAA ATPase central domain protein [Thermus aquaticus Y51MC23] gi|218243623|gb|EED10151.1| AAA ATPase central domain protein [Thermus aquaticus Y51MC23] Length = 419 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 45/117 (38%), Gaps = 13/117 (11%) Query: 67 VILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 ++L GP G+GK+ LA++ ++ + R S + L + + E +L ++ Sbjct: 41 MVLFGPPGTGKTTLAHLLAEGAGKPFLRLSAVEAGLKEVRQAVERARQ-EGGLVLFLDEI 99 Query: 125 QLFHIINSIHQYD-------SSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 H N Q L + T + P L SRL+ + +S D Sbjct: 100 ---HRFNKAQQDALLPHLESGLLTLIGATAENPAFLLTPALRSRLRLFPLRPLSQED 153 >gi|167042397|gb|ABZ07124.1| putative ATPase family associated with various cellular activities (AAA) [uncultured marine crenarchaeote HF4000_ANIW97P9] Length = 386 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 71/201 (35%), Gaps = 36/201 (17%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSW-PSWP--SRVVILVGPSGSGKSCLANIWSDKSRST 91 + L E++ +L W +W +R ++LVGP G GK+ LAN+ + + Sbjct: 4 SEKYRPKNFLDLIGNEESRKLFVEWFTNWKKGTRPILLVGPPGIGKTTLANLAAKQFGYD 63 Query: 92 RFSNIAKS--------------LDSILIDTRKPVLLEDIDLL------DFNDTQLFHIIN 131 S A L + + + ++++D + + II Sbjct: 64 LISLNASDVRNKKNIHEILSPVLGNQTVLGTPMIFIDEVDGIHGRADYGGTEA----IIK 119 Query: 132 SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI 191 + + +++ A T + S K +++ L + ++ + Sbjct: 120 ILKEPTVPIVLAANTDSSDK------MKSIKKVVKTIELKPLSPKLLRLCLNRILQLEGV 173 Query: 192 FIDKKLAAYIVQ--RME-RSL 209 ID A +V R + RS+ Sbjct: 174 KIDSDSIAKLVTKSRGDIRSM 194 >gi|170744408|ref|YP_001773063.1| recombination factor protein RarA [Methylobacterium sp. 4-46] gi|168198682|gb|ACA20629.1| AAA ATPase central domain protein [Methylobacterium sp. 4-46] Length = 437 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 34/180 (18%), Positives = 67/180 (37%), Gaps = 20/180 (11%) Query: 54 RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL 113 L +IL GP G+GK+ +A + + ++ + F I+ + + RK Sbjct: 42 ALTRLLRGGSLGSLILWGPPGTGKTTVARLLARET-ALHFEQISAIFSGVA-ELRKVFEA 99 Query: 114 EDIDLLDFNDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSR 161 T LF H N + + L+ A T S+ + L SR Sbjct: 100 ARARRAAGQGTLLFVDEIHRFNRAQLDAFLPVTEDGTVTLVGATTENPSFELNAA-LLSR 158 Query: 162 LKAATVVKISLPDDDFLEKVIVK--MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 A V+ D+ + K++ + R + +D + A +++ + A L +++ Sbjct: 159 ---ARVLVFRALDEAAIGKLLDRAEAAEGRPLPLDPEARAVLLRMADGDGRAALTLAEEI 215 >gi|159491457|ref|XP_001703682.1| predicted protein [Chlamydomonas reinhardtii] gi|158269257|gb|EDO95811.1| predicted protein [Chlamydomonas reinhardtii] Length = 161 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 1/43 (2%) Query: 62 WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL 104 WP R ++L GP G GK+ L + ++ + A + Sbjct: 5 WP-RGLLLHGPPGCGKTLLVQAVAAEAGAVLHVVTAARVTGAY 46 >gi|148381021|ref|YP_001255562.1| Holliday junction DNA helicase RuvB [Clostridium botulinum A str. ATCC 3502] gi|153934214|ref|YP_001385392.1| Holliday junction DNA helicase RuvB [Clostridium botulinum A str. ATCC 19397] gi|153937310|ref|YP_001388799.1| Holliday junction DNA helicase RuvB [Clostridium botulinum A str. Hall] gi|166231483|sp|A7FY19|RUVB_CLOB1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|166231484|sp|A5I6F1|RUVB_CLOBH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|148290505|emb|CAL84633.1| holliday junction DNA helicase [Clostridium botulinum A str. ATCC 3502] gi|152930258|gb|ABS35758.1| Holliday junction DNA helicase RuvB [Clostridium botulinum A str. ATCC 19397] gi|152933224|gb|ABS38723.1| Holliday junction DNA helicase RuvB [Clostridium botulinum A str. Hall] Length = 342 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 3/70 (4%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+ GP G GK+ LANI +++ +++ L D D+L ++ Sbjct: 55 VLFYGPPGLGKTTLANIIANEMTGNLKVTSGPAIEKAGDLAAILTSLTDYDVLFIDEI-- 112 Query: 127 FHIINSIHQY 136 H +N + Sbjct: 113 -HRLNRSIEE 121 >gi|124485994|ref|YP_001030610.1| proteasome-activating nucleotidase [Methanocorpusculum labreanum Z] gi|124363535|gb|ABN07343.1| 26S proteasome subunit P45 family [Methanocorpusculum labreanum Z] Length = 422 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+LVGP G+GK+ LA S ++ + + L I ++ E Sbjct: 196 PPKGVLLVGPPGTGKTLLAKAVSHETNAAFIRVVGSELVQKYIGEGARLVRE 247 >gi|326921318|ref|XP_003206908.1| PREDICTED: 26S protease regulatory subunit 10B-like [Meleagris gallopavo] Length = 372 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + ++ S+ I ++ E Sbjct: 149 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 200 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 201 ------MFNYARDHQ 209 >gi|322807371|emb|CBZ04945.1| holliday junction DNA helicase RuvB [Clostridium botulinum H04402 065] Length = 342 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 3/70 (4%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+ GP G GK+ LANI +++ +++ L D D+L ++ Sbjct: 55 VLFYGPPGLGKTTLANIIANEMTGNLKVTSGPAIEKAGDLAAILTSLTDYDVLFIDEI-- 112 Query: 127 FHIINSIHQY 136 H +N + Sbjct: 113 -HRLNRSIEE 121 >gi|312898444|ref|ZP_07757834.1| protein RecA [Megasphaera micronuciformis F0359] gi|310620363|gb|EFQ03933.1| protein RecA [Megasphaera micronuciformis F0359] Length = 347 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 6/91 (6%) Query: 42 DLLVHSAIEQAVRLIDSWPSWP-SRVVILVGPSGSGKSCLA-NIWSDKSRSTRFSNIAKS 99 +L V S+ AV L +P RV+ + GP SGK+ LA + + ++ + + Sbjct: 35 NLEVISSGSLAVDLAVGVGGYPRGRVIEIYGPESSGKTTLALHAIASAQKAGGIAAFIDA 94 Query: 100 LDSILIDTRKPVLLEDIDLL----DFNDTQL 126 ++ + + ++ DLL D + L Sbjct: 95 EHALDPVYARHLGVDTADLLISQPDNGEQAL 125 >gi|153939305|ref|YP_001392348.1| Holliday junction DNA helicase RuvB [Clostridium botulinum F str. Langeland] gi|168179564|ref|ZP_02614228.1| holliday junction DNA helicase RuvB [Clostridium botulinum NCTC 2916] gi|168181760|ref|ZP_02616424.1| Holliday junction DNA helicase RuvB [Clostridium botulinum Bf] gi|170754942|ref|YP_001782705.1| Holliday junction DNA helicase RuvB [Clostridium botulinum B1 str. Okra] gi|226950499|ref|YP_002805590.1| Holliday junction DNA helicase RuvB [Clostridium botulinum A2 str. Kyoto] gi|237796526|ref|YP_002864078.1| Holliday junction DNA helicase RuvB [Clostridium botulinum Ba4 str. 657] gi|166231485|sp|A7GHT8|RUVB_CLOBL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|229564226|sp|B1IMF3|RUVB_CLOBK RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|254767420|sp|C1FKG1|RUVB_CLOBJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|259495661|sp|C3KTD2|RUVB_CLOB6 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|152935201|gb|ABS40699.1| Holliday junction DNA helicase RuvB [Clostridium botulinum F str. Langeland] gi|169120154|gb|ACA43990.1| Holliday junction DNA helicase RuvB [Clostridium botulinum B1 str. Okra] gi|182669708|gb|EDT81684.1| holliday junction DNA helicase RuvB [Clostridium botulinum NCTC 2916] gi|182675108|gb|EDT87069.1| Holliday junction DNA helicase RuvB [Clostridium botulinum Bf] gi|226841138|gb|ACO83804.1| Holliday junction DNA helicase RuvB [Clostridium botulinum A2 str. Kyoto] gi|229264087|gb|ACQ55120.1| Holliday junction DNA helicase RuvB [Clostridium botulinum Ba4 str. 657] gi|295320340|gb|ADG00718.1| Holliday junction DNA helicase RuvB [Clostridium botulinum F str. 230613] Length = 342 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 3/70 (4%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+ GP G GK+ LANI +++ +++ L D D+L ++ Sbjct: 55 VLFYGPPGLGKTTLANIIANEMTGNLKVTSGPAIEKAGDLAAILTSLTDYDVLFIDEI-- 112 Query: 127 FHIINSIHQY 136 H +N + Sbjct: 113 -HRLNRSIEE 121 >gi|146412856|ref|XP_001482399.1| hypothetical protein PGUG_05419 [Meyerozyma guilliermondii ATCC 6260] Length = 432 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 23/38 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P+ ++L GP G+GKS LA + ++ ST FS + L Sbjct: 161 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 198 >gi|148270159|ref|YP_001244619.1| Holliday junction DNA helicase RuvB [Thermotoga petrophila RKU-1] gi|170288886|ref|YP_001739124.1| Holliday junction DNA helicase RuvB [Thermotoga sp. RQ2] gi|281412499|ref|YP_003346578.1| Holliday junction DNA helicase RuvB [Thermotoga naphthophila RKU-10] gi|166231566|sp|A5ILH0|RUVB_THEP1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|238688750|sp|B1LAU3|RUVB_THESQ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|147735703|gb|ABQ47043.1| Holliday junction DNA helicase subunit RuvB [Thermotoga petrophila RKU-1] gi|170176389|gb|ACB09441.1| Holliday junction DNA helicase RuvB [Thermotoga sp. RQ2] gi|281373602|gb|ADA67164.1| Holliday junction DNA helicase RuvB [Thermotoga naphthophila RKU-10] Length = 334 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 6/78 (7%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G GK+ LA+I + + ++ L LE D+L ++ Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI-- 111 Query: 127 FHIINSIHQYDSSLLMTA 144 H +N + LL +A Sbjct: 112 -HRLNKAVEE---LLYSA 125 >gi|52549234|gb|AAU83083.1| ATP-dependent 26S proteasome regulatory subunit [uncultured archaeon GZfos26E7] Length = 409 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 27/57 (47%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P + V+L GP G+GK+ LA + ++ +T + L I ++ + ++ Sbjct: 185 PPKGVLLFGPPGTGKTLLAKAVATRTDATFIRVVGSELVQKYIGEGARMVRDVFEMA 241 >gi|8569089|gb|AAF76434.1|AC015445_1 Contains similarity to p60 katanin from Chlamydomonas reinhardtii gb|AF205377 and contains an AAA domain PF|00004 [Arabidopsis thaliana] Length = 627 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 22/40 (55%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P + ++L GP G+GK+ LA + ++ + S +L S Sbjct: 372 PCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS 411 >gi|51467888|ref|NP_001003832.1| 26S protease regulatory subunit S10B [Danio rerio] gi|49619121|gb|AAT68145.1| 26S protease regulatory subunit S10B [Danio rerio] gi|54035446|gb|AAH83283.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Danio rerio] gi|55251213|emb|CAH69094.1| novel protein similar to X. tropicalis proteasome 26S ATPase subunit 6 [Danio rerio] gi|94734053|emb|CAK10966.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Danio rerio] gi|156230928|gb|AAI52261.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Danio rerio] gi|161611577|gb|AAI55770.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Danio rerio] gi|182890938|gb|AAI65828.1| Psmc6 protein [Danio rerio] Length = 389 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + ++ S+ I ++ E Sbjct: 166 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 217 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 218 ------MFNYARDHQ 226 >gi|21673243|ref|NP_661308.1| ATP-dependent protease ATP-binding subunit [Chlorobium tepidum TLS] gi|46576607|sp|Q8KFC3|CLPX_CHLTE RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|21646329|gb|AAM71650.1| ATP-dependent Clp protease, ATP-binding subunit Clpx [Chlorobium tepidum TLS] Length = 439 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 23/139 (16%), Positives = 49/139 (35%), Gaps = 29/139 (20%) Query: 19 DQPKNKEEQLFFSFPRCLGISRDDLLVH-----SAIEQAV----RLIDSWPSWPSR---- 65 DQ Q P + + D ++ ++ AV + +D+ W S Sbjct: 70 DQSPEPAFQPRLKSPVNIKEALDQYVIGQEQAKKSLAVAVYNHYKRLDA-HDWSSGDEVV 128 Query: 66 ----VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 ++L+GP+G+GK+ LA ++ + ++ T + +D++ + Sbjct: 129 IEKSNILLIGPTGTGKTLLAQTLAN------LLEVPFTIADATSLTEAGYVGDDVETIL- 181 Query: 122 NDTQLFHI--INSIHQYDS 138 +L H N Sbjct: 182 --ARLLHASDFNLERAERG 198 >gi|15825808|pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v Length = 334 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 6/78 (7%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G GK+ LA+I + + ++ L LE D+L ++ Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI-- 111 Query: 127 FHIINSIHQYDSSLLMTA 144 H +N + LL +A Sbjct: 112 -HRLNKAVEE---LLYSA 125 >gi|87125673|ref|ZP_01081517.1| putative transposase [Synechococcus sp. RS9917] gi|86166649|gb|EAQ67912.1| putative transposase [Synechococcus sp. RS9917] Length = 251 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 22/111 (19%) Query: 67 VILVGPSGSGKSCL--------------ANIWSDKSRSTRFSNIAKSLDSILI----DTR 108 ++L GPSG GK+ L + + + D I D Sbjct: 98 LLLFGPSGVGKTHLAIAITMAMAAQDQACRFFPATALVQLLQKAKAAYDLPAILQKLDRY 157 Query: 109 KPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156 ++++DI + ++ + LF +I SLL+T+ W P Sbjct: 158 SLLVIDDISYVRRSELETSVLFELICH-RYERRSLLVTSNQPFREWDDIFP 207 >gi|84497119|ref|ZP_00995941.1| hypothetical protein JNB_13033 [Janibacter sp. HTCC2649] gi|84382007|gb|EAP97889.1| hypothetical protein JNB_13033 [Janibacter sp. HTCC2649] Length = 426 Score = 40.1 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 38/116 (32%), Gaps = 7/116 (6%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFS-------NIAKSLDSILIDTRKPVLLEDI 116 V+ L GP GKS + ++ + S + ++ P+ L++ Sbjct: 24 EPVIALHGPRSVGKSTILTTFAQAHGVPVIDLDDPATRDAVVSNAASAVNEHTPLCLDEY 83 Query: 117 DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 L +N + ++T T + L RL A T+ +S Sbjct: 84 QHAPVVLDALKARLNREGAQPGTAVLTGSTRQDALPRTAQALTGRLHAMTIWPLSQ 139 >gi|308162055|gb|EFO64482.1| 26S proteasome ATPase subunit S4, putative [Giardia lamblia P15] Length = 447 Score = 40.1 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 48/144 (33%), Gaps = 45/144 (31%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRS-----------TRFSNIAKSLDSILIDTRKP- 110 P R IL GPSG+GKS LA ++++ + ++S L L K Sbjct: 226 PPRSCILHGPSGTGKSLLARACANETSACYMKMAGSELIQKYSGEGPRLVRELFKAAKAN 285 Query: 111 ----VLLEDIDLLDFN------------DTQLFHIINSI----HQYDSSLLMT------- 143 + ++++D + + ++N + ++M Sbjct: 286 QPTIIFIDEVDAVGRKRYDADSGGAREIQRTMLELLNQLDGFDRTEGVKVIMATNLIESL 345 Query: 144 ------ARTFPVSWGVCLPDLCSR 161 A V LPDL +R Sbjct: 346 DSALIRAGRIDRKIYVGLPDLTAR 369 >gi|290959480|ref|YP_003490662.1| ATP-binding protein [Streptomyces scabiei 87.22] gi|260649006|emb|CBG72120.1| putative ATP-binding protein [Streptomyces scabiei 87.22] Length = 478 Score = 40.1 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 50/116 (43%), Gaps = 26/116 (22%) Query: 63 PSRVVILVGPSGSGKSCLA------------NI-------WSDK-SRSTRFSNIAKSLDS 102 R V+ VG G+GK+ LA + W+ + + + +A+ L + Sbjct: 332 AGRNVVFVGAPGTGKTHLAIGLGVRACQAGHRVLFATATEWAARLAGARAEGRLAEELTA 391 Query: 103 ILIDTRKPVLLEDIDLLDFN-DTQ--LFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 +D ++++++ L F+ DT +F +I + +SL++T+ W L Sbjct: 392 --LDACPLLIVDEVGYLPFDTDTARLVFQLI-AHRYERASLVVTSDRPLGRWDEIL 444 >gi|242082794|ref|XP_002441822.1| hypothetical protein SORBIDRAFT_08g002900 [Sorghum bicolor] gi|241942515|gb|EES15660.1| hypothetical protein SORBIDRAFT_08g002900 [Sorghum bicolor] Length = 927 Score = 40.1 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 5/62 (8%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAK-----SLDSILIDTRKPVLLEDID 117 PSR+ +L+GP G GK+ L + K +T + S + + ++ D Sbjct: 24 PSRLTLLLGPPGCGKTTLLKALAGKLNATGLKVTGEVEYNGVELSSFVPEKTAAYIDQYD 83 Query: 118 LL 119 L Sbjct: 84 LH 85 >gi|257792056|ref|YP_003182662.1| ABC transporter-like protein [Eggerthella lenta DSM 2243] gi|257475953|gb|ACV56273.1| ABC transporter related [Eggerthella lenta DSM 2243] Length = 608 Score = 40.1 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 5/66 (7%) Query: 63 PSRVVILVGPSGSGKSCLANI----WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL 118 P +V LVGPSGSGKS LA + W + + R + S +E D Sbjct: 391 PGQVTALVGPSGSGKSTLARLIAGFWDADAGTVRLGGVPVGELSAEQLAGCISYVEQ-DN 449 Query: 119 LDFNDT 124 F+DT Sbjct: 450 YLFDDT 455 >gi|224113469|ref|XP_002316504.1| predicted protein [Populus trichocarpa] gi|222865544|gb|EEF02675.1| predicted protein [Populus trichocarpa] Length = 431 Score = 40.1 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 49/141 (34%), Gaps = 42/141 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS----------------ILID 106 P R +L GP G+GKS LA + ++ ST FS + L S Sbjct: 164 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFQMARDS 223 Query: 107 TRKPVLLEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTA--------- 144 + +++ID L T+L + + D +L+ A Sbjct: 224 APSIIFVDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGSDDHKVLVLAATNTPYALD 283 Query: 145 ----RTFPVSWGVCLPDLCSR 161 R F + LPDL +R Sbjct: 284 QAIRRRFDKRIYIPLPDLKAR 304 >gi|154288250|ref|XP_001544920.1| ribosome biogenesis ATPase RIX7 [Ajellomyces capsulatus NAm1] gi|150408561|gb|EDN04102.1| ribosome biogenesis ATPase RIX7 [Ajellomyces capsulatus NAm1] Length = 712 Score = 40.1 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 23/46 (50%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 V+L GP G GK+ LA +++SR+ S L + + + + Sbjct: 488 VLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAV 533 Score = 39.0 bits (90), Expect = 0.55, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 27/57 (47%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P R V+L GP G GK+ +AN ++ + + A S+ S + + + E D Sbjct: 210 PPRGVLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIVSGMSGESEKAIREHFDEA 266 >gi|145524307|ref|XP_001447981.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124415514|emb|CAK80584.1| unnamed protein product [Paramecium tetraurelia] Length = 541 Score = 40.1 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 58/162 (35%), Gaps = 43/162 (26%) Query: 55 LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS--------------- 99 +++ W + V+L GP G+GK+ LA + + R+T F+ A S Sbjct: 238 ILEPW-----KGVLLFGPPGTGKTMLAKAVATECRTTFFNVQASSVVSKWRGESEKLIRV 292 Query: 100 -LDSILIDTRKPVLLEDIDLL------DFNDTQ---------LFHIINSIHQYDSSLLMT 143 D + ++++D + N+ + L + + L+ Sbjct: 293 LFDLARHYEPSTIFIDEMDSIMGQRGSAGNEHEGGRRMKTELLIQLDGLLKSKKRVFLLA 352 Query: 144 ARTFPVSWGVC-LPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 A P + L L R + I LPD + E +I + Sbjct: 353 ASNLPWDLDIAMLRRLEKR------IYIPLPDQESRESMIRR 388 >gi|123487149|ref|XP_001324882.1| proteasome [Trichomonas vaginalis G3] gi|121907772|gb|EAY12659.1| proteasome, putative [Trichomonas vaginalis G3] Length = 468 Score = 40.1 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA + + +T + L + ++ E Sbjct: 246 PPKGVILFGPPGTGKTLLARAVAKSTSATFLRVVGSELIQKYLGEGPKLVRE 297 >gi|121707934|ref|XP_001271981.1| AAA family ATPase, putative [Aspergillus clavatus NRRL 1] gi|119400129|gb|EAW10555.1| AAA family ATPase, putative [Aspergillus clavatus NRRL 1] Length = 539 Score = 40.1 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 71/198 (35%), Gaps = 30/198 (15%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFS-------------NIAKSLDSILIDTRKPV 111 +IL G +G+GK+ +A + + S A++ + + RK + Sbjct: 156 PSMILWGHAGTGKTTIARVIASMVGSRFVEINSTSSGVAECKKIFAEARSELNLTGRKTI 215 Query: 112 LL-EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 + ++I + +F + L+ A T S+ V L SR + Sbjct: 216 IFCDEIHRFSKSQQDVFL---GPVESGQVTLIGATTENPSFKVQNA-LLSR---CRTFTL 268 Query: 171 SLPDDDFLEKVIVKMFADRQ------IFIDKKLAAYIVQRME---RSLVFAEKLVDKMDN 221 S D +E ++ + +D +L +Y+ + + R+ + +L + Sbjct: 269 SKLTDRDVESILHRALRVEGPNYSPSALVDDELISYLARFADGDARTSLNLLELAMDLSK 328 Query: 222 LALSRGMGITRSLAAEVL 239 + + RSL ++ Sbjct: 329 RSEMTKDELKRSLTKTLV 346 >gi|17531535|ref|NP_496273.1| Cell Division Cycle related family member (cdc-48.1) [Caenorhabditis elegans] gi|1729896|sp|P54811|TERA1_CAEEL RecName: Full=Transitional endoplasmic reticulum ATPase homolog 1; AltName: Full=Cell division cycle-related protein 48.1; AltName: Full=p97/CDC48 homolog 1 gi|3874005|emb|CAA90050.1| C. elegans protein C06A1.1, confirmed by transcript evidence [Caenorhabditis elegans] Length = 809 Score = 40.1 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 516 PSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKA 572 Score = 39.4 bits (91), Expect = 0.46, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 48/121 (39%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ S F SN+ K+ + + Sbjct: 243 PPRGILLFGPPGTGKTLIARAVANETGSFFFLINGPEVMSKMSGESESNLRKAFEECEKN 302 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + + +++ A P S Sbjct: 303 QPAILFIDEIDAIAPKREKTNGEVERRIVSQLLTLMDGVKGRSNLVVIAATNRPNSIDGA 362 Query: 155 L 155 L Sbjct: 363 L 363 >gi|326470013|gb|EGD94022.1| ribosome biogenesis ATPase RIX7 [Trichophyton tonsurans CBS 112818] Length = 743 Score = 40.1 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 12/28 (42%), Positives = 18/28 (64%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS 94 V+L GP G GK+ LA +++SR+ S Sbjct: 519 VLLWGPPGCGKTLLAKAVANESRANFIS 546 Score = 36.7 bits (84), Expect = 3.3, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 27/57 (47%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P R V+L GP G GK+ +AN ++ + + A S+ S + + L + + Sbjct: 210 PPRGVLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIISGMSGESEKALRDHFEEA 266 >gi|308509910|ref|XP_003117138.1| CRE-CDC-48.1 protein [Caenorhabditis remanei] gi|308242052|gb|EFO86004.1| CRE-CDC-48.1 protein [Caenorhabditis remanei] Length = 809 Score = 40.1 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 516 PSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKA 572 Score = 39.4 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 48/121 (39%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ +A ++++ S F SN+ K+ + + Sbjct: 243 PPRGILLFGPPGTGKTLIARAVANETGSFFFLINGPEVMSKMSGESESNLRKAFEECEKN 302 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + + +++ A P S Sbjct: 303 QPAILFIDEIDAIAPKREKTNGEVERRIVSQLLTLMDGVKGRSNLVVIAATNRPNSIDGA 362 Query: 155 L 155 L Sbjct: 363 L 363 >gi|302805412|ref|XP_002984457.1| hypothetical protein SELMODRAFT_180926 [Selaginella moellendorffii] gi|300147845|gb|EFJ14507.1| hypothetical protein SELMODRAFT_180926 [Selaginella moellendorffii] Length = 494 Score = 40.1 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 1/72 (1%) Query: 43 LLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 + S + A +P V+ L+GP G+GK+ LA + ++ F+ A Sbjct: 229 FQIVSCLRGASNFRSLGAKFPKGVL-LIGPPGTGKTLLARALAGEAGVPFFAASASEFVE 287 Query: 103 ILIDTRKPVLLE 114 + + + E Sbjct: 288 MFVGRGAARIRE 299 >gi|91773629|ref|YP_566321.1| AAA family ATPase, CDC48 subfamily protein [Methanococcoides burtonii DSM 6242] gi|91712644|gb|ABE52571.1| CDC48, AAA family ATPase [Methanococcoides burtonii DSM 6242] Length = 736 Score = 40.1 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 26/52 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P R ++L GP G+GK+ LA +++S + S L S + + + E Sbjct: 481 PPRGILLFGPPGTGKTLLAKAVANESEANFISIKGPELLSKYVGESEKAVRE 532 Score = 37.1 bits (85), Expect = 2.2, Method: Composition-based stats. Identities = 25/166 (15%), Positives = 59/166 (35%), Gaps = 39/166 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P + V+L GP G+GK+ +A + +S + + + + Sbjct: 209 PPKGVLLYGPPGTGKTMIAKAVASESEANFIPISGPEIISKYYGESEQKLREIFEEAEKE 268 Query: 107 TRKPVLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + ++++D + +D QL +++ + +++ A P S Sbjct: 269 GPTIIFIDELDSIAPKRDDVVGEVERRVVAQLLTLMDGLTSRGKVIVIAATNRPNSIDQA 328 Query: 155 LPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L + ++I +PD +V+ R + I++ L Sbjct: 329 LR------RGGRFDREIEIGIPDRGGRLQVL--YVHTRGMPIEQGL 366 >gi|55980375|ref|YP_143672.1| Holliday junction DNA helicase RuvB [Thermus thermophilus HB8] gi|62287409|sp|Q5SL87|RUVB_THET8 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|20330535|dbj|BAA76480.2| RuvB [Thermus thermophilus] gi|55771788|dbj|BAD70229.1| RuvB, Holliday junciton DNA helicase [Thermus thermophilus HB8] Length = 324 Score = 40.1 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 27/193 (13%), Positives = 74/193 (38%), Gaps = 29/193 (15%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLL 113 P ++L GP G GK+ LA++ + + + ++ + ++ + + Sbjct: 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLEEGDILFI 96 Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD---------------- 157 ++I L + H+ ++ + +++ + + LP Sbjct: 97 DEIHRLSRQAEE--HLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAP 154 Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 L SR ++ P++ L + +++ + I ++ A I +R ++ A++L Sbjct: 155 LLSRFGIVEHLEYYTPEE--LAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFR 212 Query: 218 KMDNLALSRGMGI 230 ++ + A G + Sbjct: 213 RVRDFAQVAGEEV 225 >gi|326482765|gb|EGE06775.1| ribosome biogenesis ATPase RIX7 [Trichophyton equinum CBS 127.97] Length = 743 Score = 40.1 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 12/28 (42%), Positives = 18/28 (64%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS 94 V+L GP G GK+ LA +++SR+ S Sbjct: 519 VLLWGPPGCGKTLLAKAVANESRANFIS 546 Score = 36.7 bits (84), Expect = 3.3, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 27/57 (47%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P R V+L GP G GK+ +AN ++ + + A S+ S + + L + + Sbjct: 210 PPRGVLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIISGMSGESEKALRDHFEEA 266 >gi|323691840|ref|ZP_08106096.1| AAA ATPase central domain-containing protein [Clostridium symbiosum WAL-14673] gi|323504122|gb|EGB19928.1| AAA ATPase central domain-containing protein [Clostridium symbiosum WAL-14673] Length = 444 Score = 40.1 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 10/76 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID--LLDFNDT 124 +I GP G GK+ LA I + K+RS+ A + I T ++E + T Sbjct: 54 MIFWGPPGVGKTTLARIIAGKTRSSFIDFSAVTSGIKEIKT----VMEQAEKNRSMGIRT 109 Query: 125 QLF----HIINSIHQY 136 LF H N Q Sbjct: 110 ILFVDEIHRFNKAQQD 125 >gi|323484771|ref|ZP_08090128.1| hypothetical protein HMPREF9474_01879 [Clostridium symbiosum WAL-14163] gi|323401877|gb|EGA94218.1| hypothetical protein HMPREF9474_01879 [Clostridium symbiosum WAL-14163] Length = 444 Score = 40.1 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 10/76 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID--LLDFNDT 124 +I GP G GK+ LA I + K+RS+ A + I T ++E + T Sbjct: 54 MIFWGPPGVGKTTLARIIAGKTRSSFIDFSAVTSGIKEIKT----VMEQAEKNRSMGIRT 109 Query: 125 QLF----HIINSIHQY 136 LF H N Q Sbjct: 110 ILFVDEIHRFNKAQQD 125 >gi|304397061|ref|ZP_07378940.1| AAA ATPase central domain protein [Pantoea sp. aB] gi|304355210|gb|EFM19578.1| AAA ATPase central domain protein [Pantoea sp. aB] Length = 447 Score = 40.1 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 42/199 (21%), Positives = 65/199 (32%), Gaps = 38/199 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G+GK+ LA I + + R S + + I + + T Sbjct: 53 MILWGPPGTGKTTLAEIIAHYGNADVERISAVTSGVKEIREAIERA----RQNKHAGRRT 108 Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N Q D ++ T L SR A V + Sbjct: 109 ILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSA---LLSR---ARVYLL 162 Query: 171 SLPDDDFLEKVIVKMFAD--RQIFIDKKLAAYIVQRM---------ERSLVFAEKLVDKM 219 + +E+V+ + D R + +RM R+L E + D Sbjct: 163 KSLTLEDIEQVLDQAMQDKARGYGESDIVLPDNTRRMIAELVNGDARRALNTLEMMADMA 222 Query: 220 DNLALSRGMGITRSLAAEV 238 + A S +T L EV Sbjct: 223 ETTA-SGQRELTPQLLNEV 240 >gi|198452025|ref|XP_001358593.2| GA21817 [Drosophila pseudoobscura pseudoobscura] gi|198131754|gb|EAL27734.2| GA21817 [Drosophila pseudoobscura pseudoobscura] Length = 386 Score = 40.1 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 22/52 (42%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P R V+L GP G GK+ LA + + + S + + ++ + Sbjct: 166 PPRGVLLYGPPGCGKTMLAKAVAHHTTANFISVVGSEFVQKYLGEGPRMVRD 217 >gi|182680533|ref|YP_001834679.1| ATP-dependent metalloprotease FtsH [Beijerinckia indica subsp. indica ATCC 9039] gi|182636416|gb|ACB97190.1| ATP-dependent metalloprotease FtsH [Beijerinckia indica subsp. indica ATCC 9039] Length = 640 Score = 40.1 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 66/197 (33%), Gaps = 39/197 (19%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110 R V+LVGP G+GK+ LA + ++ F+ + + Sbjct: 190 RGVLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAP 249 Query: 111 --VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGV 153 + +++ID + D + L + ++ + +L+ A P Sbjct: 250 CIIFIDEIDAVGRHRGAGLGGGNDEREQTLNQLLVEMDGFEANEGIILIAATNRPDVLDP 309 Query: 154 CLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 L L R VV PD E+++ R++ + + V R A Sbjct: 310 AL--LRPGRFDRQIVV--PNPDVVGRERILKVHI--RKVPLSPDVDLKTVARGTPGFSGA 363 Query: 213 EKLVDKMDNLALSRGMG 229 L++ ++ AL Sbjct: 364 -DLMNLVNEAALMAARR 379 >gi|162147365|ref|YP_001601826.1| transposase [Gluconacetobacter diazotrophicus PAl 5] gi|161785942|emb|CAP55522.1| putative transposase [Gluconacetobacter diazotrophicus PAl 5] Length = 281 Score = 40.1 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 59/174 (33%), Gaps = 44/174 (25%) Query: 29 FFSFPRCLGISRDDLLVHSAIE-QAVRLIDSWPSWPSRVVILV--GPSGSGKSCLA---N 82 F F + R A+ ++ + R ++ GP G+GKS LA Sbjct: 75 SFDFSFQPSLER--------NRIMAIAQLE----FIGRAEVVHFLGPPGTGKSHLATAIG 122 Query: 83 IWSDKSR--------STRFSNIAKSLDSILID------TRKPVLLED----IDLLDFNDT 124 + + K+ + +A++ + R +L+ D + + Sbjct: 123 VAAVKAGRSVYRCTLAELIEALARAEREGRLAEKIRFYARAALLIVDEIGYLPITSGGAN 182 Query: 125 QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD------LCSRLK-AATVVKIS 171 F ++N S+++T+ WG D L RL A VV+I Sbjct: 183 LFFQLVN-ARYEKGSMILTSNRGFAEWGDVFGDPVVATALLDRLLHHAIVVQIE 235 >gi|154505068|ref|ZP_02041806.1| hypothetical protein RUMGNA_02578 [Ruminococcus gnavus ATCC 29149] gi|153794547|gb|EDN76967.1| hypothetical protein RUMGNA_02578 [Ruminococcus gnavus ATCC 29149] Length = 629 Score = 40.1 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 44/139 (31%), Gaps = 44/139 (31%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 +LVGP G+GK+ LA + ++ FS + + Sbjct: 212 ALLVGPPGTGKTLLAKAVAGEANVPFFSISGSEFVEMFVGMGAAKVRDLFQQANEKAPCI 271 Query: 111 VLLEDIDL--------LDFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW----- 151 V +++ID + ND QL ++ +++ A P S Sbjct: 272 VFIDEIDAIGKKRNGNIGGNDEREQTLNQLLTEMDGFDGTKGVVILAATNQPDSLDPALL 331 Query: 152 ---------GVCLPDLCSR 161 V LPDL R Sbjct: 332 RPGRFDRRIPVELPDLKGR 350 >gi|148700414|gb|EDL32361.1| Werner helicase interacting protein 1, isoform CRA_d [Mus musculus] Length = 339 Score = 40.1 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 5/63 (7%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA+I ++ S+ + S + + + D+ N+ Sbjct: 257 PSLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 311 Query: 125 QLF 127 F Sbjct: 312 SFF 314 >gi|121702141|ref|XP_001269335.1| AAA family ATPase/60S ribosome export protein Rix7, putative [Aspergillus clavatus NRRL 1] gi|119397478|gb|EAW07909.1| AAA family ATPase/60S ribosome export protein Rix7, putative [Aspergillus clavatus NRRL 1] Length = 738 Score = 40.1 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 23/46 (50%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 V+L GP G GK+ LA +++SR+ S L + + + + Sbjct: 515 VLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKFVGESERAV 560 Score = 37.4 bits (86), Expect = 1.9, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P R V+L GP G GK+ +AN ++ + A S+ S + + L E + Sbjct: 205 PPRGVLLHGPPGCGKTMIANAFAAELGIPFIPISAPSIVSGMSGESEKALREHFEEA 261 >gi|268537162|ref|XP_002633717.1| Hypothetical protein CBG03401 [Caenorhabditis briggsae] gi|187036624|emb|CAP24301.1| hypothetical protein CBG_03401 [Caenorhabditis briggsae AF16] Length = 341 Score = 40.1 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 16/32 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P R ++L GP G GK+ LA + + + Sbjct: 115 PPRGILLYGPPGCGKTLLAKAVARAAGCRFIN 146 >gi|2498879|sp|Q56214|RUVB_THETH RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|7144503|gb|AAB03726.2| RuvB Protein [Thermus thermophilus] Length = 324 Score = 40.1 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 27/193 (13%), Positives = 74/193 (38%), Gaps = 29/193 (15%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLL 113 P ++L GP G GK+ LA++ + + + ++ + ++ + + Sbjct: 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLEEGDILFI 96 Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD---------------- 157 ++I L + H+ ++ + +++ + + LP Sbjct: 97 DEIHRLSRQAEE--HLYPAMEDFVMDIVIGQGPAARTIRLELPRFALIGATTRPGLITAP 154 Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 L SR ++ P++ L + +++ + I ++ A I +R ++ A++L Sbjct: 155 LLSRFGIVEHLEYYTPEE--LAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFR 212 Query: 218 KMDNLALSRGMGI 230 ++ + A G + Sbjct: 213 RVRDFAQVEGEEV 225 >gi|89095117|ref|ZP_01168043.1| hypothetical protein MED92_17485 [Oceanospirillum sp. MED92] gi|89080612|gb|EAR59858.1| hypothetical protein MED92_17485 [Oceanospirillum sp. MED92] Length = 507 Score = 40.1 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 6/90 (6%) Query: 53 VRLIDSWPSWPSRVVIL-VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV 111 +RL D + P + L G SGSGKS L+ D++ + R + + + K Sbjct: 314 LRLTDYYARRPKPALFLMHGVSGSGKSHLSQQLVDQTDTIRIRSDVERKRLFRELSLKG- 372 Query: 112 LLEDIDLLDFNDTQLFHIINSIHQYDSSLL 141 E IDL H N +H + LL Sbjct: 373 --EKIDLYGPQMNA--HTFNLLHDTSADLL 398 >gi|85702838|ref|ZP_01033942.1| Rhodanese-like protein [Roseovarius sp. 217] gi|85671766|gb|EAQ26623.1| Rhodanese-like protein [Roseovarius sp. 217] Length = 389 Score = 40.1 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 57/148 (38%), Gaps = 12/148 (8%) Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 ++P+ + ++ G +G+GK+ L + + + + + L + PV Sbjct: 182 EAFPAPITLIDGGTGTGKTHLLSHLAAQ-GAQVID--LEHLAAHRGSVFGPVAGGQPSQK 238 Query: 120 DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAATVVKISLPDDDFL 178 F ++ L + + L+ + LP L S ++ A V+++ +P L Sbjct: 239 SF-ESALAAQM--ARLDPTRLVYIEAESTRIGRINLPPMLTSAMRVAPVIRLEVP----L 291 Query: 179 EKVIVKMFADR-QIFIDKKLAAYIVQRM 205 + + AD + D I+ R+ Sbjct: 292 AARVSHLCADYTDLIADPDRLDAILTRL 319 >gi|116620545|ref|YP_822701.1| general secretion pathway protein-like protein [Candidatus Solibacter usitatus Ellin6076] gi|116223707|gb|ABJ82416.1| general secretion pathway protein-related protein [Candidatus Solibacter usitatus Ellin6076] Length = 297 Score = 40.1 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 36/204 (17%), Positives = 70/204 (34%), Gaps = 29/204 (14%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVR-LIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 Q F+ L E+A+ LI S + L G G+GK+ + Sbjct: 10 QNPFNMSPDPSF----LFRSPQHEEALASLIYGVQS-RKGFIALTGEVGTGKTTMLECLR 64 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDS---- 138 D + + + + + ++ +L D+DL L + N + + Sbjct: 65 DFLNAQQIAFASLFNSRLTVEQFFELLAYDLDLRCNRLSKTEVLLSLNNMLLERAGAGRT 124 Query: 139 SLLMTARTFPVSWGV-----CLPDLCSRLKAATVV----------KISLPDDDFLEKVIV 183 ++L+ + W V L +L +R + K+ P+ L++ I Sbjct: 125 TVLIVDEAHNLEWDVLEEIRLLGNLENRRGKLLQIILSGQQELDRKLEAPEFRQLKQRIA 184 Query: 184 KMFADRQIFIDKKLAAYIVQRMER 207 + R ++ AY+ RM R Sbjct: 185 LRCSLRGFS-PEETFAYVNSRMSR 207 >gi|118474580|ref|YP_891667.1| Holliday junction DNA helicase RuvB [Campylobacter fetus subsp. fetus 82-40] gi|166231477|sp|A0RN84|RUVB_CAMFF RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|28974219|gb|AAO64220.1| putative Holliday junction DNA helicase [Campylobacter fetus] gi|118413806|gb|ABK82226.1| holliday junction DNA helicase RuvB [Campylobacter fetus subsp. fetus 82-40] Length = 343 Score = 40.1 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 28/58 (48%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 V+ GP G GK+ LA+I +++ + + A ++ LE+ D+L ++ Sbjct: 55 VLFYGPPGLGKTTLAHIIANEMGANIKISSAPMIEKSGDLAAILTNLEEGDVLFIDEI 112 >gi|306821135|ref|ZP_07454751.1| crossover junction ATP-dependent DNA helicase RuvB [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550828|gb|EFM38803.1| crossover junction ATP-dependent DNA helicase RuvB [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 334 Score = 40.1 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 3/70 (4%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G GK+ L++I +++ S +++ L++ D+L ++ Sbjct: 59 VLLYGPPGLGKTTLSHIIANEMNSNIKITSGPAIERAGDLAALLTNLQEGDVLFIDEI-- 116 Query: 127 FHIINSIHQY 136 H +N + Sbjct: 117 -HRVNRSVEE 125 >gi|304436497|ref|ZP_07396471.1| crossover junction ATP-dependent DNA helicase RuvB [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370543|gb|EFM24194.1| crossover junction ATP-dependent DNA helicase RuvB [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 345 Score = 40.1 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 32/183 (17%), Positives = 72/183 (39%), Gaps = 15/183 (8%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT-Q 125 V+L GP G GK+ LA I +++ + A +++ L++ D+L ++ + Sbjct: 60 VLLCGPPGLGKTTLAAIIANEMGANFRQTSAPAIERQGDLASLLTNLQEHDVLFIDEIHR 119 Query: 126 LFH-----IINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 L H + +++ + +++ P + + L DL K L Sbjct: 120 LSHHVEEILYSAMEDHAIDIII--GKGPSARSIRL-DLAPFTLVGATTKTGS-----LSA 171 Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 + F Q ++ ++ +ER+ +++ L ++R T +A +LK Sbjct: 172 PLRDRFGI-QARLEYYTTDALLLIIERTAEILSVHIERDGALEIARRSRGTPRVANRILK 230 Query: 241 ETQ 243 + Sbjct: 231 RVR 233 >gi|289540940|gb|ADD09611.1| 26S proteasome AAA-ATPase subunit RPT4a [Trifolium repens] Length = 439 Score = 40.1 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 24/50 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P + V+L GP G+GK+ LA + + + SL S+L ++ Sbjct: 174 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVFCSLCSVLQVVSSAII 223 >gi|282163672|ref|YP_003356057.1| proteasome-activating nucleotidase [Methanocella paludicola SANAE] gi|282155986|dbj|BAI61074.1| proteasome-activating nucleotidase [Methanocella paludicola SANAE] Length = 412 Score = 40.1 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + ++++ I L I ++ E Sbjct: 187 PPKGVLLYGPPGTGKTLLAKAVAHSTKASFIRIIGSELVQKYIGEGARMVRE 238 >gi|302877500|ref|YP_003846064.1| MgsA AAA+ ATPase-like [Gallionella capsiferriformans ES-2] gi|302580289|gb|ADL54300.1| MgsA AAA+ ATPase-like [Gallionella capsiferriformans ES-2] Length = 439 Score = 40.1 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 65/179 (36%), Gaps = 21/179 (11%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA + + + F ++ L + + + + T L Sbjct: 51 MILWGPPGVGKTTLARLMASAFDAE-FMPLSAVLSGVKDIREAIAQAQRVLQQNGRHTIL 109 Query: 127 F----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 F H N Q D+ L L+T A T S+ V L SR A V + Sbjct: 110 FVDEVHRFNKSQQ-DAFLPFVEQGLVTFIGATTENPSFEVNNA-LLSR---AQVYVLHAL 164 Query: 174 DDDFLEKVIVK--MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 ++ L ++ + A + ++ + +++++ A + G + Sbjct: 165 SEEELGQLFERAQAVAMPGLSFADDAHERVIGYADGDARRLLNVLEQLQTAAETAGKTL 223 >gi|237807705|ref|YP_002892145.1| AAA ATPase [Tolumonas auensis DSM 9187] gi|237499966|gb|ACQ92559.1| AAA ATPase [Tolumonas auensis DSM 9187] Length = 275 Score = 40.1 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 53/151 (35%), Gaps = 29/151 (19%) Query: 36 LGISRDDLLVHSAIEQAVRLIDSWPSWP---SRVVILVGPSGSGKSCLANIWS-----DK 87 + D ++ AI+ A I + W +++ G GSGKS LA + + Sbjct: 95 ERMDHSDPILEHAIQTAHSFISGFEHWEQHGGSCILIYGDYGSGKSTLAGAIAHELINQR 154 Query: 88 SRSTRFSNIAKSLDSILIDTRK--------PVLLEDIDLLDFNDTQ-------------L 126 +S F A +D + + LE++DLL ++ L Sbjct: 155 QKSVIFQQWASIIDRLFFAVIEDQEERNRYRRALEEVDLLIIDEIGANKTRMVESQSSFL 214 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 H++ S+++ P S + D Sbjct: 215 GHLLRRRRNLSKSVILITNHNPASLHQAVGD 245 >gi|254420221|ref|ZP_05033945.1| IstB-like ATP binding protein [Brevundimonas sp. BAL3] gi|254420480|ref|ZP_05034204.1| IstB-like ATP binding protein [Brevundimonas sp. BAL3] gi|254420625|ref|ZP_05034349.1| IstB-like ATP binding protein [Brevundimonas sp. BAL3] gi|196186398|gb|EDX81374.1| IstB-like ATP binding protein [Brevundimonas sp. BAL3] gi|196186657|gb|EDX81633.1| IstB-like ATP binding protein [Brevundimonas sp. BAL3] gi|196186802|gb|EDX81778.1| IstB-like ATP binding protein [Brevundimonas sp. BAL3] Length = 242 Score = 40.1 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 48/114 (42%), Gaps = 22/114 (19%) Query: 65 RVVILVGPSGSGKSCLA-NIWSDKSRSTRFSNIAKSLD-------SILIDTRKPVL--LE 114 R ++LVG +G+GK+ LA I ++ R+ ++D + + L Sbjct: 99 RNIVLVGGTGTGKTHLATAIIANVVRAGARGRYFNTVDLVNRLEEETRLGKAGALAAHLC 158 Query: 115 DIDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 +D++ ++ LFH+I+ +++ +S+++T W D Sbjct: 159 RLDVVVLDELGYLPFARSGGQLLFHLISKLYER-TSVIVTTNLAFGEWPTVFGD 211 >gi|115389314|ref|XP_001212162.1| 26S protease regulatory subunit 6A-B [Aspergillus terreus NIH2624] gi|114194558|gb|EAU36258.1| 26S protease regulatory subunit 6A-B [Aspergillus terreus NIH2624] Length = 461 Score = 40.1 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 22/160 (13%), Positives = 53/160 (33%), Gaps = 38/160 (23%) Query: 70 VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113 GP G+GK+ LA + ++ +T L + I ++ + Sbjct: 247 YGPPGTGKTLLARACAAETNATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPSIIFI 306 Query: 114 EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158 +++D + + ++N D ++ A L L Sbjct: 307 DELDAVGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRIKVLAATNRVDVLDPAL--L 364 Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 S RL ++ LP+++ ++ R++ ++ + Sbjct: 365 RSGRLD--RKIEFPLPNEEARANILQ--IHSRKMAVEDTV 400 >gi|169622581|ref|XP_001804699.1| hypothetical protein SNOG_14515 [Phaeosphaeria nodorum SN15] gi|111056935|gb|EAT78055.1| hypothetical protein SNOG_14515 [Phaeosphaeria nodorum SN15] Length = 825 Score = 40.1 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 11/67 (16%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P+R ++L GP G+GK+ LA + +S+ST F+ A SL S + + ++ Sbjct: 569 PARGMLLFGPPGTGKTMLARAVATESKSTFFAISASSLTSKFLGESEKLV---------- 618 Query: 123 DTQLFHI 129 LF + Sbjct: 619 -RALFQL 624 >gi|94495102|ref|ZP_01301683.1| transposase [Sphingomonas sp. SKA58] gi|94425368|gb|EAT10388.1| transposase [Sphingomonas sp. SKA58] Length = 269 Score = 40.1 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 58/164 (35%), Gaps = 35/164 (21%) Query: 29 FFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANI----- 83 F F GI + LL ++ I+S ++L G SG+GK+ Sbjct: 79 TFDFDAAPGIRKPHLL---SLAAGDDWIES-----GGNLLLFGQSGTGKTHAVAAIGHAL 130 Query: 84 --------WSDKSRSTRFSNIAKSLDSIL-----IDTRKPVLLEDIDLLDFND---TQLF 127 + + + A+ S+ +D ++L+D+ + + + LF Sbjct: 131 IDTGRRVLFCSTTDMVQKLQSARRDLSLPAMLDKLDKFDLIVLDDLSYVRKDQVETSALF 190 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +I + SL +TA +W PD A TV I Sbjct: 191 ELI-AHRYERHSLAITANQPFSAWDNVFPD-----PAMTVAAID 228 >gi|332158285|ref|YP_004423564.1| replication factor C large subunit [Pyrococcus sp. NA2] gi|331033748|gb|AEC51560.1| replication factor C large subunit [Pyrococcus sp. NA2] Length = 479 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 66/185 (35%), Gaps = 27/185 (14%) Query: 47 SAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRFS--------- 94 AIE+ I++W ++L GP GSGK+ +++ Sbjct: 23 DAIEKVRAWIEAWLHGNPPKKKALLLAGPPGSGKTTTVYALANEYNFEVIELNASDERTY 82 Query: 95 ------NIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFP 148 A IL RK + L++ D ++ + I I + + ++M A Sbjct: 83 NKIARYVQAAYTMDILGKRRKIIFLDEADNIEPSGAA--EIAKLIDKARNPIIMAAN--- 137 Query: 149 VSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 W V ++ R A +V+ + ++++ I + K++ I +R Sbjct: 138 HYWEV-PKEIRDR---AELVEYKRLTQRDVMSALIRILRREGITVPKEILTEIAKRASGD 193 Query: 209 LVFAE 213 L A Sbjct: 194 LRAAI 198 >gi|328852964|gb|EGG02106.1| ATP-dependent peptidase [Melampsora larici-populina 98AG31] Length = 814 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 57/162 (35%), Gaps = 35/162 (21%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK--------------- 109 R V+L GP G+GK+ LA + ++ F D + + Sbjct: 413 RGVLLTGPPGTGKTLLARAVAGEAGVQFFIASGSEFDEMYVGVGARRIRELFAAARKAAP 472 Query: 110 -PVLLEDIDLLDF-----NDTQLFHIINS-------IHQYDSSLLMTARTFPVSWGVCLP 156 + ++++D L + + +N Q + +LM A FP S L Sbjct: 473 AIIFIDELDALGAKRSSKDQHYIKQTLNQLLVELDGFQQTEGVILMAATNFPQSLDKAL- 531 Query: 157 DLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 +R + V + LPD +++ R + ++ L Sbjct: 532 ---TRPGRFDRHVAVPLPDARGRVQILKHHA--RNVTVNSDL 568 >gi|326500946|dbj|BAJ95139.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326507238|dbj|BAJ95696.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 394 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 19/32 (59%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + V+L GP G+GK+ LA + +S + + Sbjct: 119 PQKGVLLYGPPGTGKTMLAKAIAKESGAVFIN 150 >gi|323139016|ref|ZP_08074076.1| AAA ATPase central domain protein [Methylocystis sp. ATCC 49242] gi|322395770|gb|EFX98311.1| AAA ATPase central domain protein [Methylocystis sp. ATCC 49242] Length = 254 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 25/62 (40%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 R V+LVGP G+GK+ LA + ++ FS + + + + + Sbjct: 191 RGVLLVGPPGTGKTLLARAIAGEAGVPFFSISGSDFVEMFVGVGASRVRDMFEQAKRTRP 250 Query: 125 QL 126 L Sbjct: 251 AL 252 >gi|312132192|ref|YP_003999532.1| aaa atpase central domain protein [Leadbetterella byssophila DSM 17132] gi|311908738|gb|ADQ19179.1| AAA ATPase central domain protein [Leadbetterella byssophila DSM 17132] Length = 422 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 54/146 (36%), Gaps = 20/146 (13%) Query: 65 RVVILVGPSGSGKSCLANIWSDKS-----RSTRFSNIAKSLDSILIDTRKP----VLLED 115 +IL GP G GK+ LA + ++ S + S K L +L + +++ Sbjct: 42 PSMILWGPPGVGKTSLAFLIAEVSKRQFHNLSAISAGVKDLREVLARPSGLFPPILFIDE 101 Query: 116 IDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 I + + L + L+ A T S+ V L SR V + Sbjct: 102 IHRFNKSQQDALL----GAVEKGKVTLIGATTENPSFEVNSA-LLSR---CQVYILEAFG 153 Query: 175 DDFLEKVIVKMFADRQI--FIDKKLA 198 + L ++ + ++ ++ + ++ Sbjct: 154 QEELRCLVDRALSEDELLKTLPIEVI 179 >gi|311031534|ref|ZP_07709624.1| recombination factor protein RarA [Bacillus sp. m3-13] Length = 423 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 25/171 (14%), Positives = 61/171 (35%), Gaps = 31/171 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST---------RFSNIAKSLDSILIDTRKPVLLEDID 117 +IL GP G GK+ +A + ++ ++ + + + ++L+++ Sbjct: 43 MILYGPPGIGKTSIATAIAGSTQYAFRTLNAVVHNKKDMEIVAEEAKMSGKVILILDEVH 102 Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 L D L H+ N +L+ T + P + SR + ++ Sbjct: 103 RLDKAKQDFLLPHLEN-----GRIVLIGATTSNPYHAIN---PAIRSR---CQIFELHPL 151 Query: 174 DDDFLEKVIVKM-------FADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 ++ VI++ F D Q+ + ++ + + A ++ Sbjct: 152 SVAEIKHVIMQALEDKERGFGDYQVDLAERAMEHFANGCGGDVRSALNALE 202 >gi|331242462|ref|XP_003333877.1| cell division cycle protein 48 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309312867|gb|EFP89458.1| cell division cycle protein 48 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 795 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 28/65 (43%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P R ++L GP G GK+ LAN +++ + + S+ S + + + + + Sbjct: 174 PIRGLLLCGPPGCGKTMLANAIANQLGVRLINVSSTSIVSGMSGESEKAIRDIFEQATKQ 233 Query: 123 DTQLF 127 L Sbjct: 234 APCLL 238 Score = 36.3 bits (83), Expect = 3.5, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 19/34 (55%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 V+L GP G GK+ +A +++S++ S L Sbjct: 515 VLLWGPPGCGKTLVAKAVANESQANFISVKGPEL 548 >gi|303233293|ref|ZP_07319964.1| ATP-dependent metallopeptidase HflB [Atopobium vaginae PB189-T1-4] gi|302480593|gb|EFL43682.1| ATP-dependent metallopeptidase HflB [Atopobium vaginae PB189-T1-4] Length = 635 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 21/139 (15%), Positives = 46/139 (33%), Gaps = 44/139 (31%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 +LVGP G+GK+ LA + +++ F + + Sbjct: 217 ALLVGPPGTGKTLLARAVAGEAKVPFFQISGSEFVEMFVGRGAAKVRDLFKQAKEKAPCI 276 Query: 111 VLLEDIDLLDF---------ND-----TQLFHIINSIHQYDSSLLMTARTFPVSW----- 151 + ++++D + ++ QL ++ ++ +++ A P + Sbjct: 277 IFIDELDTVGKKRGMSINSNDEREQTLNQLLAEMDGFDNHEGIVVLAATNRPETLDPALL 336 Query: 152 ---------GVCLPDLCSR 161 V LPDL R Sbjct: 337 RPGRFDRRIPVELPDLAGR 355 >gi|302307351|ref|NP_983987.2| ADL109Wp [Ashbya gossypii ATCC 10895] gi|299788959|gb|AAS51811.2| ADL109Wp [Ashbya gossypii ATCC 10895] Length = 738 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 29/50 (58%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P R ++L GP G+GK+ LA + +S ST FS A +L S + + ++ Sbjct: 488 PVRGMLLFGPPGTGKTMLARAVATESHSTFFSISASTLTSKYLGESEKLV 537 >gi|284006422|emb|CBA71658.1| ATP-dependent Clp protease ATP-binding subunit [Arsenophonus nasoniae] Length = 428 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 19/136 (13%), Positives = 48/136 (35%), Gaps = 34/136 (25%) Query: 2 NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55 ++++E+ P ++++ P P + DD ++ Sbjct: 46 DIIREEVKEIAPHRERSALPT----------PHEIRHHLDDYVIGQENAKKVLAVAVYNH 95 Query: 56 IDSWPSWPS------------RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI 103 + + ++L+GP+GSGK+ LA + R+ ++ ++ Sbjct: 96 YKRLRNVSNEGVNGEGVELGKSNILLIGPTGSGKTLLAETLA------RYLDVPFTMADA 149 Query: 104 LIDTRKPVLLEDIDLL 119 T + ED++ + Sbjct: 150 TTLTEAGYVGEDVENI 165 >gi|303311419|ref|XP_003065721.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta SOWgp] gi|240105383|gb|EER23576.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta SOWgp] gi|320039584|gb|EFW21518.1| AAA family ATPase [Coccidioides posadasii str. Silveira] Length = 535 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 33/217 (15%), Positives = 72/217 (33%), Gaps = 43/217 (19%) Query: 49 IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS-------------N 95 LI++ +IL G +G+GK+ +A + + S Sbjct: 146 NGVLRGLIEADR---VPSMILWGGAGTGKTTIARVIATMVGSRFVEINSTSSGVAECKKI 202 Query: 96 IAKSLDSILIDTRKPVLL-EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 A++ + + + RK ++ ++I + +F + L+ A T S+ V Sbjct: 203 FAEARNELRLAGRKTIIFCDEIHRFSKSQQDVFL---GPVESGQVTLIGATTENPSFKVQ 259 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF------IDKKLAAYIVQRMERS 208 L SR +S DD + ++ + +D++L Y+ + Sbjct: 260 NA-LLSR---CRTFTLSKLTDDDIISILNRALELEGPNYSPTNLVDEELIRYLAAFAD-- 313 Query: 209 LVFAEKLVDKMDNLALSRGMG----------ITRSLA 235 A ++ ++ +TR+L Sbjct: 314 -GDARTSLNLLELAMDLSKRPGMTKDELKKGLTRTLV 349 >gi|223937028|ref|ZP_03628936.1| ATP-dependent metalloprotease FtsH [bacterium Ellin514] gi|223894309|gb|EEF60762.1| ATP-dependent metalloprotease FtsH [bacterium Ellin514] Length = 567 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 18/117 (15%), Positives = 39/117 (33%), Gaps = 28/117 (23%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK----------------P 110 V+L+GP G+GK+ LA + ++ + FS + + Sbjct: 188 VLLIGPPGTGKTMLAKAIAGEANANFFSVHGSDFTEVYVGVGAKRVRQLFKQAAKQQPSI 247 Query: 111 VLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + N L ++ + +++ A P L Sbjct: 248 IFIDEIDCVGKNRKFDTNGEQQQTINALLAAMDGFEGNEGVVVIAATNRPEDLDDAL 304 >gi|170055839|ref|XP_001863760.1| spastin [Culex quinquefasciatus] gi|167875728|gb|EDS39111.1| spastin [Culex quinquefasciatus] Length = 543 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 29/50 (58%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P++ ++L GP G+GK+ LA + + +T FS A +L S + + ++ Sbjct: 300 PAKGLLLFGPPGNGKTLLARAVATECSATFFSISAATLTSKYVGDGEKLV 349 >gi|159905409|ref|YP_001549071.1| proteasome-activating nucleotidase [Methanococcus maripaludis C6] gi|226723241|sp|A9A916|PAN_METM6 RecName: Full=Proteasome-activating nucleotidase; Short=PAN; AltName: Full=Proteasomal ATPase; AltName: Full=Proteasome regulatory ATPase; AltName: Full=Proteasome regulatory particle gi|159886902|gb|ABX01839.1| 26S proteasome subunit P45 family [Methanococcus maripaludis C6] Length = 407 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + ++ ++ + L I ++ + Sbjct: 181 PPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRD 232 >gi|150402844|ref|YP_001330138.1| proteasome-activating nucleotidase [Methanococcus maripaludis C7] gi|166199292|sp|A6VHR1|PAN_METM7 RecName: Full=Proteasome-activating nucleotidase; Short=PAN; AltName: Full=Proteasomal ATPase; AltName: Full=Proteasome regulatory ATPase; AltName: Full=Proteasome regulatory particle gi|150033874|gb|ABR65987.1| 26S proteasome subunit P45 family [Methanococcus maripaludis C7] Length = 407 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + ++ ++ + L I ++ + Sbjct: 181 PPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRD 232 >gi|134046787|ref|YP_001098272.1| proteasome-activating nucleotidase [Methanococcus maripaludis C5] gi|166199291|sp|A4G0S4|PAN_METM5 RecName: Full=Proteasome-activating nucleotidase; Short=PAN; AltName: Full=Proteasomal ATPase; AltName: Full=Proteasome regulatory ATPase; AltName: Full=Proteasome regulatory particle gi|132664412|gb|ABO36058.1| Proteasome-activating nucleotidase [Methanococcus maripaludis C5] Length = 407 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + ++ ++ + L I ++ + Sbjct: 181 PPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRD 232 >gi|116753771|ref|YP_842889.1| proteasome-activating nucleotidase [Methanosaeta thermophila PT] gi|116665222|gb|ABK14249.1| Proteasome-activating nucleotidase [Methanosaeta thermophila PT] Length = 404 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P + V+L GP G+GK+ LA ++ + +T + I ++ E DL Sbjct: 178 PPKGVLLYGPPGTGKTLLAKAVANSTEATFLRVVGSEFVQKYIGEGARLVRELFDLA 234 >gi|45359210|ref|NP_988767.1| proteasome-activating nucleotidase [Methanococcus maripaludis S2] gi|59798294|sp|Q6LWR0|PAN_METMP RecName: Full=Proteasome-activating nucleotidase; Short=PAN; AltName: Full=Proteasomal ATPase; AltName: Full=Proteasome regulatory ATPase; AltName: Full=Proteasome regulatory particle gi|45048085|emb|CAF31203.1| proteasome-activating nucleotidase (PAN) [Methanococcus maripaludis S2] Length = 407 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + ++ ++ + L I ++ + Sbjct: 181 PPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRD 232 >gi|332977851|gb|EGK14604.1| crossover junction ATP-dependent DNA helicase RuvB [Desmospora sp. 8437] Length = 332 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 3/74 (4%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P V+L GP G GK+ L++I +++ + +++ L+ DLL + Sbjct: 52 PLDHVLLYGPPGLGKTTLSHIIANEMGVQVRTTSGPAIERPGDLAAILTNLQQGDLLFID 111 Query: 123 DTQLFHIINSIHQY 136 + H +N + Sbjct: 112 EI---HRLNRSVEE 122 >gi|326494204|dbj|BAJ90371.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 438 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 15/32 (46%), Positives = 20/32 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P R +L GP G+GKS LA + ++ ST FS Sbjct: 167 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFS 198 >gi|315918924|ref|ZP_07915164.1| recombination factor protein RarA [Bacteroides sp. D2] gi|313692799|gb|EFS29634.1| recombination factor protein RarA [Bacteroides sp. D2] Length = 322 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 66/174 (37%), Gaps = 34/174 (19%) Query: 67 VILVGPSGSGKSCLANIWSDK--SRSTRFSNIAKSLDSI------------LIDTRKPVL 112 IL GP G GK+ LA I ++K + S + + + + + Sbjct: 41 FILWGPPGVGKTTLAQIIANKLETPFYTLSAVTSGVKDVREVIDRAKSNRFFSQSSPILF 100 Query: 113 LEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++I + L + + L+ A T S+ V P L SR + + Sbjct: 101 IDEIHRFSKSQQDSLL----GAVENGTVTLIGATTENPSFEVIRP-LLSR---CQLYVLK 152 Query: 172 LPDDDFLEKVIVKM------FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 + + L++++ + +R+I + + A + R S A KL++ + Sbjct: 153 SLEKEDLQELLQRAITTDAILKERKIELKETTA---MLRF--SGGDARKLLNIL 201 >gi|310798906|gb|EFQ33799.1| male sterility protein [Glomerella graminicola M1.001] Length = 1233 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 26/70 (37%) Query: 52 AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV 111 A R ++ VV++ GP GSGKS LA + + + + V Sbjct: 1045 ANRWVEKGQGAAKTVVVVTGPCGSGKSTLAASLASWLGAPFVEGDSLHSKDAVEKMGSNV 1104 Query: 112 LLEDIDLLDF 121 L D D + Sbjct: 1105 ALTDDDRSAW 1114 >gi|326790541|ref|YP_004308362.1| ATP-dependent metalloprotease FtsH [Clostridium lentocellum DSM 5427] gi|326541305|gb|ADZ83164.1| ATP-dependent metalloprotease FtsH [Clostridium lentocellum DSM 5427] Length = 579 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 24/60 (40%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G+GK+ +A + ++ FS + + + + ++ + Sbjct: 185 LILYGPPGTGKTLMAKAIAKEAGVAFFSASGSDFVQMYVGVGASRVRDIFKEARKHEKAV 244 >gi|260892448|ref|YP_003238545.1| ABC transporter related protein [Ammonifex degensii KC4] gi|260864589|gb|ACX51695.1| ABC transporter related protein [Ammonifex degensii KC4] Length = 262 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 43/138 (31%), Gaps = 25/138 (18%) Query: 41 DDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 +DL V +R I+ + P +L GP+GSGK+ L SR Sbjct: 8 EDLSVTVGERLVLRDINLVIN-PGETHVLFGPNGSGKTTLLGTIMGFSRYRVVKGRILFR 66 Query: 101 DSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCS 160 EDI L + L + P GV L DL Sbjct: 67 G------------EDITSLPVDQRA---------AKGIGLAF--QRPPSLRGVLLRDLVR 103 Query: 161 RLKAATVVKISLPDDDFL 178 RLK V + ++ Sbjct: 104 RLKQDGVA-LERMAEELK 120 >gi|290958426|ref|YP_003489608.1| membrane-bound FtsH family protein [Streptomyces scabiei 87.22] gi|260647952|emb|CBG71057.1| putative membrane-bound FtsH-family protein [Streptomyces scabiei 87.22] Length = 660 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 35/204 (17%), Positives = 65/204 (31%), Gaps = 49/204 (24%) Query: 67 VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110 V+L GP G+GK+ LA + ++ S + + + Sbjct: 196 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKANAPAI 255 Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 V +++ID + D + L + ++ +L+ A P L Sbjct: 256 VFVDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDVKGGVILIAATNRPDILDPAL 315 Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVKMFADRQIFIDKKL-- 197 PD+ RL+ V + P D L V + + L Sbjct: 316 LRPGRFDRQIAVDRPDMQGRLEILKVHQKGKPVAPDVDLGAVARRTPGMTGADLSNVLNE 375 Query: 198 AAYIVQRMERSLVFAEKLVDKMDN 221 AA + R ++ L+ L + +D Sbjct: 376 AALLTARSDKKLIDNHMLDEAIDR 399 >gi|228948113|ref|ZP_04110397.1| hypothetical protein bthur0007_42390 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228811471|gb|EEM57808.1| hypothetical protein bthur0007_42390 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 476 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 29/203 (14%), Positives = 72/203 (35%), Gaps = 44/203 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDT----RKPVLLEDID 117 +IL GP G+GK+ +A+ + + + ++ K ++ ++ + ++L+++ Sbjct: 90 MILYGPPGTGKTSIASAIAGSTGTPFRLLNAVTHNKKDMEVVVQEAKMHRHLVLILDEVH 149 Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 L D L H+ + L+ T + + SR + ++ Sbjct: 150 RLDKAKQDFLLPHL-----ESGLLTLIGATTSNPFHAINSAI---RSR---CQIFELHAL 198 Query: 174 DDDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVDKM------- 219 +D L + + D++ + + + + + A ++ Sbjct: 199 TEDDLLIGLKRALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTT 258 Query: 220 -DNLALSRGMGITRSLAAEVLKE 241 D A IT +A E L++ Sbjct: 259 DDKAA-----EITLEIAEECLQK 276 >gi|293333701|ref|NP_001169629.1| hypothetical protein LOC100383510 [Zea mays] gi|224030533|gb|ACN34342.1| unknown [Zea mays] Length = 400 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 31/196 (15%), Positives = 61/196 (31%), Gaps = 48/196 (24%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V+L GP G+GK+ LA + + ++ ++ I ++ Sbjct: 173 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFGYARDH 232 Query: 113 ------LEDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSW 151 +++ID + L ++N + ++ A P Sbjct: 233 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDELGKVKMIMATNRPDVL 292 Query: 152 GVCLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L RL ++I LP++ +V+ A I + E Sbjct: 293 DPAL--LRPGRLD--RKIEIPLPNEQSRMEVLKIHAAG------------IAKHGEIDYE 336 Query: 211 FAEKLVDKMDNLALSR 226 KL + + L Sbjct: 337 AVVKLAEGFNGADLRN 352 >gi|171690244|ref|XP_001910047.1| hypothetical protein [Podospora anserina S mat+] gi|170945070|emb|CAP71181.1| unnamed protein product [Podospora anserina S mat+] Length = 1094 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 22/42 (52%) Query: 68 ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109 +L GP G+GK+ LA + +S + A S++ + + + Sbjct: 788 LLYGPPGTGKTLLAKAVAKESGANMLEVSAASINDMWLGQSE 829 >gi|188586411|ref|YP_001917956.1| Holliday junction DNA helicase subunit RuvB [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351098|gb|ACB85368.1| Holliday junction DNA helicase subunit RuvB [Natranaerobius thermophilus JW/NM-WN-LF] Length = 341 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 V+L GP G GK+ LA+I +++ +++ LE+ D+L ++ Sbjct: 58 VLLYGPPGLGKTTLAHIIAEQMGVNIHVTSGPAIERPGDLAAILTNLEERDVLFIDEI 115 >gi|126728193|ref|ZP_01744009.1| ATPase, AAA family protein [Sagittula stellata E-37] gi|126711158|gb|EBA10208.1| ATPase, AAA family protein [Sagittula stellata E-37] Length = 436 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 60/173 (34%), Gaps = 20/173 (11%) Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDID 117 + ++ GP G GK+ +A + +D + + S I + + + Sbjct: 49 AAGSLGSIVFWGPPGVGKTTIARLLADATDLHFVQISAIFTGVPELRKVFEAA----KLR 104 Query: 118 LLDFNDTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAA 165 + T LF H N + + LL+ A T S+ + L SR Sbjct: 105 RQQGHGTLLFVDEIHRFNKAQQDGFLPHMEDGTILLVGATTENPSFELNRA-LLSR-SQV 162 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218 V++ DD + DR++ +D+ ++ + L+++ Sbjct: 163 LVLERLSVDDLEKLATRAETMLDRKLPLDEGARHALIDMADGDGRALLNLIEQ 215 >gi|120406320|ref|YP_956149.1| ATP-dependent metalloprotease FtsH [Mycobacterium vanbaalenii PYR-1] gi|119959138|gb|ABM16143.1| membrane protease FtsH catalytic subunit [Mycobacterium vanbaalenii PYR-1] Length = 781 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 64/205 (31%), Gaps = 54/205 (26%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+L GP G+GK+ LA + ++ F+ + + Sbjct: 199 VLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFEQAKQNSPCI 258 Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + + L + ++ +L+ A P L Sbjct: 259 IFVDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGDRQGVILIAATNRPDILDPAL 318 Query: 156 --------------PDLCSRLKAATVVKIS---LPDDDFLEKVIVKMFADRQIFIDKKL- 197 PDL R +A V + DD L+ + + + + Sbjct: 319 LRPGRFDRQIPVSNPDLAGR-RAVLRVHSQGKPIADDADLDGLAKRTVGMSGADLANVIN 377 Query: 198 -AAYIVQRMERSL---VFAEKLVDK 218 AA + R ++ E+ VD+ Sbjct: 378 EAALLTARENGTIITGPALEEAVDR 402 >gi|85709273|ref|ZP_01040338.1| 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxyphosphogluconatealdolase (eda) [Erythrobacter sp. NAP1] gi|85687983|gb|EAQ27987.1| 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxyphosphogluconatealdolase (eda) [Erythrobacter sp. NAP1] Length = 212 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 11/91 (12%) Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF---AE 213 DL +RL+AA VV + DD I + A + + + + RS E Sbjct: 4 DLTTRLEAAPVVPLIAEDDAAKAVEITRAVAAGGLSVIEVVM--------RSANAQAGME 55 Query: 214 KLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 ++D+ D+L + G +T A VL Q Sbjct: 56 AIIDQTDDLVVGAGTVLTLDQAKSVLASGAQ 86 >gi|328868721|gb|EGG17099.1| AAA ATPase domain-containing protein [Dictyostelium fasciculatum] Length = 756 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 41/121 (33%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R V+L GP G+GK+ LA + +S T F I Sbjct: 250 PPRGVLLYGPPGTGKTMLARTVASESGCTLFTMNGADILDKYYGVTEKAIQSIFRDAAQR 309 Query: 107 TRKPVLLEDIDLLD-FNDTQ-----------LFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + ++++D L D L +++ I+ + +++ P + Sbjct: 310 APSIIFIDELDALCPKRDQATTEIEKRLVGCLLTLLDGINSDERVVVIGCTNRPDALDGS 369 Query: 155 L 155 L Sbjct: 370 L 370 >gi|326794638|ref|YP_004312458.1| ATPase AAA [Marinomonas mediterranea MMB-1] gi|326545402|gb|ADZ90622.1| AAA ATPase central domain protein [Marinomonas mediterranea MMB-1] Length = 446 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 22/138 (15%), Positives = 45/138 (32%), Gaps = 25/138 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTR--------------KPVL 112 IL GP G GK+ A +++ + A I + Sbjct: 54 FILWGPPGVGKTTFAQLFAKSMSAQFIELSAVMSGVKDIRAAVEKAKQWRTVHNSSTLLF 113 Query: 113 LEDIDLLDFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKI 170 ++++ + + F + + L + T L SR A V ++ Sbjct: 114 VDEVHRFNKSQQDAFLPF---IEDGTFLFVGATTENPAFELNSA---LLSR---ARVYRL 164 Query: 171 SLPDDDFLEKVIVKMFAD 188 + P D +++V++ D Sbjct: 165 TNPSVDVIKQVLLTALND 182 >gi|299066065|emb|CBJ37246.1| Replication-associated recombination protein A [Ralstonia solanacearum CMR15] Length = 449 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 31/187 (16%), Positives = 63/187 (33%), Gaps = 21/187 (11%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS-------------NIAKSLDSILIDTRKPVLL 113 +IL GP G GK+ LA + +D + + + ++ R V + Sbjct: 53 MILWGPPGVGKTTLARLMADAFDAEFIALSAVLSGVKDIREAVERAEQFRAHGRRTLVFV 112 Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 +++ + + F + + A T S+ V L SR A V + Sbjct: 113 DEVHRFNKSQQDAFLPH---VESGLFTFIGATTENPSFEVNGA-LLSR---AAVYVLKSL 165 Query: 174 DDDFLEKVIVKMFAD-RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITR 232 DD L+++ + + + +V + ++ + A ++ G T Sbjct: 166 SDDELKQLAERARQELGGLEWAPAALDAVVASADGDGRKLLNNIEIVTRAARAQADGETV 225 Query: 233 SLAAEVL 239 E L Sbjct: 226 PAIDEAL 232 >gi|302901862|ref|XP_003048527.1| hypothetical protein NECHADRAFT_95752 [Nectria haematococca mpVI 77-13-4] gi|256729460|gb|EEU42814.1| hypothetical protein NECHADRAFT_95752 [Nectria haematococca mpVI 77-13-4] Length = 547 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 60/196 (30%), Gaps = 30/196 (15%) Query: 29 FFSFPRCLGISRDDL---LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 + D LV LI+S +IL G SG+GK+ +A + Sbjct: 134 PLAERMRPRTLDDVFGQDLVGP-NGVLRSLIESSQ---VPSMILWGASGTGKTTIARCIA 189 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLF----HIINSIH------- 134 S A S + D+ L T +F H N Sbjct: 190 QMVGSRFIELNATSTGVAEVKKLFQEAANDL-ALTGRKTIIFCDEIHRFNKAQQDVFLKP 248 Query: 135 -QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF- 192 + + L+ A T S+ V L SR + + + ++ + + + Sbjct: 249 VEAGTVTLIGATTENPSFKVAAA-LLSR---CRTFTLQTLTTEDVVSILQRAIREEESVY 304 Query: 193 -----IDKKLAAYIVQ 203 +D+ + Y+ + Sbjct: 305 PSTPLLDEAMITYLAR 320 >gi|256847992|ref|ZP_05553436.1| ATPase [Lactobacillus coleohominis 101-4-CHN] gi|256715052|gb|EEU30029.1| ATPase [Lactobacillus coleohominis 101-4-CHN] Length = 427 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 26/175 (14%), Positives = 62/175 (35%), Gaps = 30/175 (17%) Query: 67 VILVGPSGSGKSCLANIWSDK---------SRSTRFSNIAKSLDSILIDTRKPVLLEDID 117 +IL GP G+GK+ +A+ + + + ++ ++ + +LL++I Sbjct: 43 MILYGPPGTGKTSIASAIAGSTKYAFRTLNAATDTKKDLQIVVEEAKMSGTVILLLDEIH 102 Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 L D L H+ + +L+ A T + P + SR + ++ Sbjct: 103 RLDKAKQDFLLPHL-----ESGKIILIGATTENPYININ-PAIRSR---TQIFEVHPLKT 153 Query: 176 DFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + + + + D R + ID ++ ++ ++ A Sbjct: 154 NEMRVAVERALQDPERGLGKLPIQIDDDAETQLLTATN---GDLRSALNGLELAA 205 >gi|242036965|ref|XP_002465877.1| hypothetical protein SORBIDRAFT_01g047440 [Sorghum bicolor] gi|241919731|gb|EER92875.1| hypothetical protein SORBIDRAFT_01g047440 [Sorghum bicolor] Length = 712 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 422 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKA 478 >gi|145607029|ref|XP_361452.2| hypothetical protein MGG_03926 [Magnaporthe oryzae 70-15] gi|145014635|gb|EDJ99203.1| hypothetical protein MGG_03926 [Magnaporthe oryzae 70-15] Length = 618 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 65/198 (32%), Gaps = 41/198 (20%) Query: 67 VILVGPSGSGKSCLANIWSDKSR------------STRFSNIAKSLDSILIDTRKP---- 110 V+LVGP G+GK+ LA + ++ A+ + + + Sbjct: 182 VLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFEEVFVGVGARRVRDLFTAAKTASPAI 241 Query: 111 VLLEDIDLLDFNDTQ------------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158 V ++++D + L ++ Q +++ A FP S L Sbjct: 242 VFIDELDAIGGKRNAKDPSYAKQTLNQLLTELDGFEQDSGVIVIAATNFPRSLDKAL--- 298 Query: 159 CSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKL-V 216 +R + V++ LPD ++ I D Y + RS + Sbjct: 299 -TRPGRFDRHVQVDLPDIRGRIAILKHHATK--IKADDN-IDYEA--IARSTPGLSGAEL 352 Query: 217 DKM-DNLAL-SRGMGITR 232 + + + A+ + T Sbjct: 353 ESIVNQAAIHASKTRKTI 370 >gi|119496141|ref|XP_001264844.1| AAA family ATPase/60S ribosome export protein Rix7, putative [Neosartorya fischeri NRRL 181] gi|119413006|gb|EAW22947.1| AAA family ATPase/60S ribosome export protein Rix7, putative [Neosartorya fischeri NRRL 181] Length = 736 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 23/46 (50%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 V+L GP G GK+ LA +++SR+ S L + + + + Sbjct: 513 VLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKFVGESERAV 558 Score = 37.4 bits (86), Expect = 1.8, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P R V+L GP G GK+ +AN ++ + A S+ S + + L E + Sbjct: 205 PPRGVLLHGPPGCGKTMIANAFAAELGVPFIPISAPSIVSGMSGESEKALREHFEEA 261 >gi|115469952|ref|NP_001058575.1| Os06g0714500 [Oryza sativa Japonica Group] gi|53791771|dbj|BAD53565.1| putative spastin protein [Oryza sativa Japonica Group] gi|113596615|dbj|BAF20489.1| Os06g0714500 [Oryza sativa Japonica Group] gi|125556743|gb|EAZ02349.1| hypothetical protein OsI_24453 [Oryza sativa Indica Group] gi|125598493|gb|EAZ38273.1| hypothetical protein OsJ_22651 [Oryza sativa Japonica Group] gi|215712288|dbj|BAG94415.1| unnamed protein product [Oryza sativa Japonica Group] Length = 393 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 19/32 (59%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + V+L GP G+GK+ LA + +S + + Sbjct: 118 PQKGVLLYGPPGTGKTMLAKAIAKESGAVFIN 149 >gi|53720212|ref|YP_109198.1| recombination factor protein RarA [Burkholderia pseudomallei K96243] gi|53725979|ref|YP_103691.1| recombination factor protein RarA [Burkholderia mallei ATCC 23344] gi|52210626|emb|CAH36610.1| putative ATPase protein [Burkholderia pseudomallei K96243] gi|52429402|gb|AAU49995.1| ATPase, AAA family protein [Burkholderia mallei ATCC 23344] Length = 455 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 61/173 (35%), Gaps = 28/173 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ LA + + + A I + ++ + T L Sbjct: 69 MILWGPPGVGKTTLARLTALAFDCEFIALSAVLGGVKDIREAMEQARDTLNRTGRH-TIL 127 Query: 127 F----HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 F H N Q +LL + A T S+ V L SR A V + Sbjct: 128 FVDEIHRFNKAQQD--ALLPFVESGLVTFIGATTENPSFEVNSA-LLSR---AQVYVLKS 181 Query: 173 PDDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 +D L +++ K D + D K +V + A + ++ ++ Sbjct: 182 LAEDELRQLL-KRAQDVALGGLAFDDKAVDTLVGYAD---GDARRFLNLLEQA 230 >gi|146278540|ref|YP_001168699.1| recombination factor protein RarA [Rhodobacter sphaeroides ATCC 17025] gi|145556781|gb|ABP71394.1| Recombination protein MgsA [Rhodobacter sphaeroides ATCC 17025] Length = 437 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 59/175 (33%), Gaps = 24/175 (13%) Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 S +IL GP G GK+ +A + + ++ A + D RK + Sbjct: 50 ASGSLSSLILWGPPGVGKTTIARLLAKETDLAFVQISAIFTG--VPDLRKVFEAARLRRA 107 Query: 120 DFNDTQLF----HIINSIHQYD-------SSLLM---TARTFPVSWGVCLPDLCSRLKAA 165 + T LF H N Q ++L+ T L SR A Sbjct: 108 NGQGTLLFVDEIHRFNKAQQDGFLPHMEDGTILLVGATTENPSFELNAA---LMSR---A 161 Query: 166 TVVKISLPDDDFLEKVIVKMFAD--RQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218 V+ + LE++ + + R + +D +++ + LV++ Sbjct: 162 QVIVLERLSLADLERLAQRAEHELGRALPLDGPAREALLEMADGDGRALLNLVEQ 216 >gi|326911480|ref|XP_003202086.1| PREDICTED: transitional endoplasmic reticulum ATPase-like, partial [Meleagris gallopavo] Length = 142 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 20/31 (64%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF 93 P R ++L GP G+GK+ +A ++++ + F Sbjct: 109 PPRGILLYGPPGTGKTLIARAVANETGAFFF 139 >gi|326937857|gb|AEA13753.1| cell division protein ftsH [Bacillus thuringiensis serovar chinensis CT-43] Length = 633 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 31/198 (15%), Positives = 63/198 (31%), Gaps = 45/198 (22%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ FS + + Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 257 Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + + L + ++ + +++ A P L Sbjct: 258 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANEGIIIIAATNRPDILDPAL 317 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211 L+ + + PD + E V+ R +D+ + I R Sbjct: 318 ------LRPGRFDRQITVDRPDVNGREAVLKVHA--RNKPLDEHINLRAIATRTP-GFSG 368 Query: 212 AEKLVDKMDNLALSRGMG 229 A L + ++ AL Sbjct: 369 A-DLENLLNEAALVAARR 385 >gi|325095497|gb|EGC48807.1| ribosome biogenesis ATPase RIX7 [Ajellomyces capsulatus H88] Length = 751 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 23/46 (50%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 V+L GP G GK+ LA +++SR+ S L + + + + Sbjct: 527 VLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAV 572 Score = 39.0 bits (90), Expect = 0.53, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 27/57 (47%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P R V+L GP G GK+ +AN ++ + + A S+ S + + L E D Sbjct: 210 PPRGVLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIVSGMSGESEKALREHFDEA 266 >gi|322701880|gb|EFY93628.1| AAA family ATPase [Metarhizium acridum CQMa 102] Length = 774 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 31/50 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S+ST FS A SL S + + ++ Sbjct: 518 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTSKYLGESEKLV 567 >gi|293191262|ref|ZP_06609169.1| cell division protein FtsH [Actinomyces odontolyticus F0309] gi|292820587|gb|EFF79557.1| cell division protein FtsH [Actinomyces odontolyticus F0309] Length = 678 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 26/62 (41%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 R V+L GP G+GK+ LA + ++ + FS + + + E + N Sbjct: 210 RGVLLYGPPGTGKTLLAKAVAGEANAPFFSISGSEFMELYVGVGASRVRELFERAKKNAP 269 Query: 125 QL 126 + Sbjct: 270 AI 271 >gi|255514182|gb|EET90444.1| AAA family ATPase, CDC48 subfamily [Candidatus Micrarchaeum acidiphilum ARMAN-2] Length = 756 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 36/214 (16%), Positives = 80/214 (37%), Gaps = 42/214 (19%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109 P + V+L G G+GK+ LA +++S + + L SI I+ ++ Sbjct: 253 PPKGVLLYGAPGTGKTLLAKAVANESDANFIDISGPELVSKFVGESEERLRSIFIEAKEK 312 Query: 110 ---PVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + +++ A P + Sbjct: 313 APTIIFMDEIDAIAPRREEATNEVERRMVSQLLTLMDGMGSRGQVIVIGATNRPDAID-- 370 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 P L + ++I +PD + ++++ R + + K + ++ L Sbjct: 371 -PALRRPGRFDREIEIGVPDRNARKEILQ--IHTRNMPLAKDV------NID-DLADITH 420 Query: 215 LVDKMDNLALSRGMGIT--RSLAAEVLKETQQCD 246 D AL+R + R + EVL + + Sbjct: 421 GYTGADLTALAREAAMATLRKILPEVLNKKSIPN 454 >gi|242053361|ref|XP_002455826.1| hypothetical protein SORBIDRAFT_03g025820 [Sorghum bicolor] gi|241927801|gb|EES00946.1| hypothetical protein SORBIDRAFT_03g025820 [Sorghum bicolor] Length = 710 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 33/190 (17%), Positives = 66/190 (34%), Gaps = 38/190 (20%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK----------------P 110 V+LVGP G+GK+ LA + ++ FS + + + Sbjct: 259 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFAAAKKRSPCI 318 Query: 111 VLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL--P 156 + +++ID + + QL ++ Q + +++ A FP S L P Sbjct: 319 IFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRP 378 Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216 R + + PD + +++ + I + I+ R A L Sbjct: 379 ---GRFD--RHIVVPNPDVEGRRQILESHMSK--ILKSDDVDLMIIARGTPGFSGA-DLA 430 Query: 217 DKMDNLALSR 226 + ++ AL Sbjct: 431 NLVNVAALKA 440 >gi|240274120|gb|EER37638.1| ribosome biogenesis ATPase RIX7 [Ajellomyces capsulatus H143] Length = 751 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 23/46 (50%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 V+L GP G GK+ LA +++SR+ S L + + + + Sbjct: 527 VLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAV 572 Score = 39.0 bits (90), Expect = 0.54, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 27/57 (47%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P R V+L GP G GK+ +AN ++ + + A S+ S + + L E D Sbjct: 210 PPRGVLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIVSGMSGESEKALREHFDEA 266 >gi|228970254|ref|ZP_04130914.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228789489|gb|EEM37408.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis serovar thuringiensis str. T01001] Length = 612 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 31/198 (15%), Positives = 63/198 (31%), Gaps = 45/198 (22%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ FS + + Sbjct: 177 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 236 Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + + L + ++ + +++ A P L Sbjct: 237 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANEGIIIIAATNRPDILDPAL 296 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211 L+ + + PD + E V+ R +D+ + I R Sbjct: 297 ------LRPGRFDRQITVDRPDVNGREAVLKVHA--RNKPLDEHINLRAIATRTP-GFSG 347 Query: 212 AEKLVDKMDNLALSRGMG 229 A L + ++ AL Sbjct: 348 A-DLENLLNEAALVAARR 364 >gi|238485976|ref|XP_002374226.1| AAA family ATPase, putative [Aspergillus flavus NRRL3357] gi|220699105|gb|EED55444.1| AAA family ATPase, putative [Aspergillus flavus NRRL3357] Length = 527 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 29/199 (14%), Positives = 67/199 (33%), Gaps = 31/199 (15%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFS-------------NIAKSLDSILIDTRKPV 111 +IL G G+GK+ +A + + S + + + + RK + Sbjct: 150 PSMILWGGPGTGKTTIARVIASMVGSRFVEINSTSSGVAECKKIFSDAKSELNLTGRKTI 209 Query: 112 LL-EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 + ++I + +F + L+ A T S+ V L SR + Sbjct: 210 IFCDEIHRFSKSQQDVFL---GPVESGQVTLIGATTENPSFKVQNA-LLSR---CRTFTL 262 Query: 171 SLPDDDFLEKVIVKMFADRQ------IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 + D+ ++ ++ + +D +L Y+ + + A ++ ++ Sbjct: 263 AKLTDEDVKSILDRALQVEGPNYSPSALVDDELINYLAKFSD---GDARTSLNLLELAMD 319 Query: 225 SRGMG-ITRSLAAEVLKET 242 IT+ L +T Sbjct: 320 LSKRPGITKEELKRSLTKT 338 >gi|242013108|ref|XP_002427257.1| DNA replication licensing factor Mcm2, putative [Pediculus humanus corporis] gi|212511590|gb|EEB14519.1| DNA replication licensing factor Mcm2, putative [Pediculus humanus corporis] Length = 854 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 19/83 (22%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRF-------------------SNIAKSLDSILI 105 ++LVG SG+GKS L S + + F SN ++++ Sbjct: 333 SHLLLVGDSGTGKSHLLRYASRIANHSVFTTGVGSTTAGLTVAAVRESSNWTLEAGALVL 392 Query: 106 DTRKPVLLEDIDLLDFNDTQLFH 128 ++D + + D H Sbjct: 393 SDGGICCIDDFNSIREQDRASIH 415 >gi|213407452|ref|XP_002174497.1| cell division cycle protein [Schizosaccharomyces japonicus yFS275] gi|212002544|gb|EEB08204.1| cell division cycle protein [Schizosaccharomyces japonicus yFS275] Length = 745 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 50/121 (41%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 250 PPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 309 Query: 107 TRKPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + +QL +++ + + ++M A P S Sbjct: 310 SPAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNIVVMAATNRPNSIDPA 369 Query: 155 L 155 L Sbjct: 370 L 370 >gi|218895201|ref|YP_002443612.1| cell division protein FtsH [Bacillus cereus G9842] gi|228898819|ref|ZP_04063102.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis IBL 4222] gi|218542807|gb|ACK95201.1| cell division protein FtsH [Bacillus cereus G9842] gi|228860844|gb|EEN05221.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis IBL 4222] Length = 633 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 31/198 (15%), Positives = 63/198 (31%), Gaps = 45/198 (22%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ FS + + Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 257 Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + + L + ++ + +++ A P L Sbjct: 258 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANEGIIIIAATNRPDILDPAL 317 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211 L+ + + PD + E V+ R +D+ + I R Sbjct: 318 ------LRPGRFDRQITVDRPDVNGREAVLKVHA--RNKPLDEHINLRAIATRTP-GFSG 368 Query: 212 AEKLVDKMDNLALSRGMG 229 A L + ++ AL Sbjct: 369 A-DLENLLNEAALVAARR 385 >gi|118117610|ref|XP_423903.2| PREDICTED: similar to valosin-containing protein, partial [Gallus gallus] Length = 169 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 20/31 (64%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF 93 P R ++L GP G+GK+ +A ++++ + F Sbjct: 136 PPRGILLYGPPGTGKTLIARAVANETGAFFF 166 >gi|148228613|ref|NP_001079582.1| nuclear VCP-like [Xenopus laevis] gi|28278757|gb|AAH44980.1| MGC52979 protein [Xenopus laevis] Length = 854 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 56/167 (33%), Gaps = 42/167 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P R +L GP G GK+ LA + + A + D + Sbjct: 293 PPRGFLLHGPPGCGKTLLAQAIAGELDMPILKVAATEMVSGVSGESEQKLRELFDQAVSS 352 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHII---NSIHQYDSSLLMTARTFPVSW 151 + +++ID + QL + NS+ L++ A P S Sbjct: 353 APCILFIDEIDSITPKREVASKDMERRIVAQLLTCMDDLNSLAVTTQVLVIGATNRPDSL 412 Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDK 195 L +A + + +PD+ ++++ + R++ + + Sbjct: 413 DPALR------RAGRFDREICLGIPDEGARKRILQTLC--RKLKLPE 451 >gi|72111462|ref|XP_790164.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] gi|115951765|ref|XP_001175913.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] Length = 889 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 16/74 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R V+L GP G GK+ LA + +SR S + D + Sbjct: 381 PPRGVLLYGPPGVGKTMLARAVALESRVHIVVINMPEVLSKFYGESESRLRALFDEAAQN 440 Query: 107 TRKPVLLEDIDLLD 120 +L++++D L Sbjct: 441 APSLILIDELDALC 454 >gi|85709567|ref|ZP_01040632.1| Cell division cycle protein [Erythrobacter sp. NAP1] gi|85688277|gb|EAQ28281.1| Cell division cycle protein [Erythrobacter sp. NAP1] Length = 742 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 35/196 (17%), Positives = 72/196 (36%), Gaps = 40/196 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTRKP 110 P + V+L GP G+GK+ LA +++S + + K L + + + Sbjct: 208 PPKGVLLHGPPGTGKTRLAQAVANESDAEFFTINGPEIMGSGYGESEKRLREVFEEATRA 267 Query: 111 ----VLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 V +++ID + Q+ +++ I + +++ A P + Sbjct: 268 SPAIVFIDEIDSIAPKRSGVPGEAEKRLVAQMLTLMDGIESRANLVVIAATNRPDAIDEA 327 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 L R V I +PD +++ R + +++ + + R+ V A Sbjct: 328 LRR-PGRFDREIV--IGVPDQRGRREIL--AIHTRGMPLEEAVDLSELARVTHGFVGA-- 380 Query: 215 LVDKMDNLALSRGMGI 230 D AL+R I Sbjct: 381 -----DIAALAREAAI 391 >gi|71653872|ref|XP_815566.1| mitochondrial ATP-dependent zinc metallopeptidase [Trypanosoma cruzi strain CL Brener] gi|70880630|gb|EAN93715.1| mitochondrial ATP-dependent zinc metallopeptidase, putative [Trypanosoma cruzi] Length = 657 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 56/155 (36%), Gaps = 37/155 (23%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTR----------------KP 110 +LVGP G GK+ LA + ++ F D + + Sbjct: 222 ALLVGPPGCGKTMLAKAIAKEAGVNFFYATGSEFDEMYVGVGSRRVRELFAAAKANSPAL 281 Query: 111 VLLEDIDLLDFNDTQLFHII-----NSIHQY-------DSSLLMTARTFPVSWGVCLPDL 158 + +++ID L ++ H N + +S +++ A P + L Sbjct: 282 IFIDEIDALGGKRSRTDHAYSRMTLNQLLAEMDGFSSKESIIVLAATNTPDALDKAL--- 338 Query: 159 CSRL-KAATVVKISLPD----DDFLEKVIVKMFAD 188 +R + T + + PD ++ LE + K+ AD Sbjct: 339 -TRPGRFDTTISVDPPDMKGREEVLEVYLNKVKAD 372 >gi|325660833|ref|ZP_08149461.1| hypothetical protein HMPREF0490_00193 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472907|gb|EGC76117.1| hypothetical protein HMPREF0490_00193 [Lachnospiraceae bacterium 4_1_37FAA] Length = 280 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 16/104 (15%), Positives = 38/104 (36%), Gaps = 18/104 (17%) Query: 67 VILVGPSGSGKSCLANIWSDK----------SRSTRFSNIAKSLDSI-----LIDTRKPV 111 +L GP G+GKS +A ++ + + L+ + + + Sbjct: 113 FLLWGPIGTGKSYIAGCIANALLNQEITVKMTNFNTIIDDMFPLEDKTEYINALAKYELL 172 Query: 112 LLEDIDLLDFNDTQL---FHIINSIHQYDSSLLMTARTFPVSWG 152 +L+D+ ++ L F +I+ ++ L++T Sbjct: 173 ILDDLGTERSSEYALGIVFSVIDRRYRSGRPLIVTTNLPIKQLK 216 >gi|325293302|ref|YP_004279166.1| recombination factor protein RarA [Agrobacterium sp. H13-3] gi|325061155|gb|ADY64846.1| recombination factor protein RarA [Agrobacterium sp. H13-3] Length = 438 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 31/188 (16%), Positives = 66/188 (35%), Gaps = 31/188 (16%) Query: 54 RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPV 111 R+ID S +I GP G+GK+ +A + S ++ + S I + + Sbjct: 47 RMID---SGSLGSMIFWGPPGTGKTTVARLLSGEAGLAFEQISAIFSGVADLKKVFEAA- 102 Query: 112 LLEDIDLLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPD 157 ++ T LF H N + + +L+ T Sbjct: 103 ---RTRRMNGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTIILVGATTENPSFELNAA--- 156 Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKL 215 L SR A V+ D++ L +++ + + + ++ A +++ + L Sbjct: 157 LLSR---ARVLTFGSHDEESLGELLKRAEEAEGKPLPLTEEARASLIRMADGDGRAVLTL 213 Query: 216 VDKMDNLA 223 +++ A Sbjct: 214 AEEVWRAA 221 >gi|296420748|ref|XP_002839930.1| hypothetical protein [Tuber melanosporum Mel28] gi|295636138|emb|CAZ84121.1| unnamed protein product [Tuber melanosporum] Length = 958 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 17/30 (56%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 V+L GP G+GK+ LA + +S +T Sbjct: 687 PGVLLYGPPGTGKTLLARAVAKESGATVLE 716 >gi|300088434|ref|YP_003758956.1| RecA protein [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528167|gb|ADJ26635.1| recA protein [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 342 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 36/114 (31%), Gaps = 13/114 (11%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID-----L 118 RV + GP GSGK+ LA + + ++ + D+D Sbjct: 64 GRVTEIYGPEGSGKTTLAQHVIAQCQKLGGKAFYIDVEHAFDPKYAKLCGIDLDEFYIAQ 123 Query: 119 LDFNDTQLFHIINSIHQYDSSLL----MTARTFPVSWGVCLPD----LCSRLKA 164 D + L + + L+ + A + D L +RL + Sbjct: 124 PDAGEEALDICEKLVRSGGADLVVVDSVAALVPKAELEGDMGDSHVGLQARLMS 177 >gi|284165453|ref|YP_003403732.1| ATPase AAA [Haloterrigena turkmenica DSM 5511] gi|284015108|gb|ADB61059.1| AAA family ATPase, CDC48 subfamily [Haloterrigena turkmenica DSM 5511] Length = 743 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 62/163 (38%), Gaps = 33/163 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P + V+L GP G+GK+ LA ++++ ++ FS + + + Sbjct: 222 PPQGVLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDATEE 281 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + ++++D + QL +++ + +++ A S Sbjct: 282 SPSIIFIDELDSIAPKREDVTGEVERRVVAQLLTMMDGLESRGQVIVIAATNRVDS---V 338 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L + ++I +PD+ E+++ R + + + Sbjct: 339 DPALRRPGRFDREIEIGVPDEVGREEILQ--IHTRGMPLSDDV 379 Score = 36.7 bits (84), Expect = 3.4, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 19/32 (59%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P V+L GP G+GK+ +A ++++ + S Sbjct: 495 PPAGVLLYGPPGTGKTLMAKAVANETNANFIS 526 >gi|320010035|gb|ADW04885.1| ATP-dependent metalloprotease FtsH [Streptomyces flavogriseus ATCC 33331] Length = 682 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 35/204 (17%), Positives = 65/204 (31%), Gaps = 49/204 (24%) Query: 67 VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110 V+L GP G+GK+ LA + ++ S + + + Sbjct: 209 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKANAPAI 268 Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 V +++ID + D + L + ++ +L+ A P L Sbjct: 269 VFVDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDVKGGVILIAATNRPDILDPAL 328 Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVKMFADRQIFIDKKL-- 197 PD+ RL+ V + P +D L V + + L Sbjct: 329 LRPGRFDRQIAVDRPDMQGRLEILKVHQKGKPVAEDVDLNAVARRTPGFTGADLSNVLNE 388 Query: 198 AAYIVQRMERSLVFAEKLVDKMDN 221 AA + R + L+ L + +D Sbjct: 389 AALLTARSNKKLIDNHMLDEAIDR 412 >gi|242064412|ref|XP_002453495.1| hypothetical protein SORBIDRAFT_04g006830 [Sorghum bicolor] gi|241933326|gb|EES06471.1| hypothetical protein SORBIDRAFT_04g006830 [Sorghum bicolor] Length = 400 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 31/196 (15%), Positives = 61/196 (31%), Gaps = 48/196 (24%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V+L GP G+GK+ LA + + ++ ++ I ++ Sbjct: 173 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFGYARDH 232 Query: 113 ------LEDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSW 151 +++ID + L ++N + ++ A P Sbjct: 233 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDELGKVKMIMATNRPDVL 292 Query: 152 GVCLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L RL ++I LP++ +V+ A I + E Sbjct: 293 DPAL--LRPGRLD--RKIEIPLPNEQSRMEVLKIHAAG------------IAKHGEIDYE 336 Query: 211 FAEKLVDKMDNLALSR 226 KL + + L Sbjct: 337 AVVKLAEGFNGADLRN 352 >gi|183602057|ref|ZP_02963426.1| hypothetical protein BIFLAC_07261 [Bifidobacterium animalis subsp. lactis HN019] gi|219682966|ref|YP_002469349.1| ATP-dependent zinc metallopeptidase involved in cell division [Bifidobacterium animalis subsp. lactis AD011] gi|241190543|ref|YP_002967937.1| hypothetical protein Balac_0499 [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195949|ref|YP_002969504.1| hypothetical protein Balat_0499 [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218942|gb|EDT89584.1| hypothetical protein BIFLAC_07261 [Bifidobacterium animalis subsp. lactis HN019] gi|219620616|gb|ACL28773.1| ATP-dependent zinc metallopeptidase involved in cell division [Bifidobacterium animalis subsp. lactis AD011] gi|240248935|gb|ACS45875.1| hypothetical protein Balac_0499 [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250503|gb|ACS47442.1| hypothetical protein Balat_0499 [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289178278|gb|ADC85524.1| FtsH [Bifidobacterium animalis subsp. lactis BB-12] Length = 698 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 25/62 (40%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 R V+L GP G+GK+ LA + ++ ++ + + + + D N Sbjct: 252 RGVLLYGPPGTGKTLLARAIAGEAGVPFYAMAGSDFVEMFVGLGASRVRDLFDEAKKNAP 311 Query: 125 QL 126 + Sbjct: 312 AI 313 >gi|118368535|ref|XP_001017474.1| ATPase, AAA family protein [Tetrahymena thermophila] gi|89299241|gb|EAR97229.1| ATPase, AAA family protein [Tetrahymena thermophila SB210] Length = 852 Score = 40.1 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 6/74 (8%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123 + V++L GP GSGK+ LA + A + L+E I+ + N+ Sbjct: 266 NSVILLAGPPGSGKTTLARTVAKHCGYKVIEINASE------ERTAAKLIEKIETVTRNE 319 Query: 124 TQLFHIINSIHQYD 137 F N + Sbjct: 320 ALQFKNDNKAEEQK 333 >gi|332373814|gb|AEE62048.1| unknown [Dendroctonus ponderosae] Length = 391 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + + ++ ++ I ++ E Sbjct: 168 PPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIRE-------- 219 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 220 ------MFNYAKDHQ 228 >gi|239610529|gb|EEQ87516.1| sister chromatid cohesion factor [Ajellomyces dermatitidis ER-3] Length = 957 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRF---SNIAKSLDSILIDTRKPVLLEDIDLLDF 121 +V++L GP G GK+ LA++ + ++ ++ +S D + R V E++ + Sbjct: 270 KVLLLTGPPGLGKTTLAHVCARQAGYEVLEINASDERSRDVVKGRIRDAVGTENVKGVSV 329 Query: 122 N 122 + Sbjct: 330 D 330 >gi|227834066|ref|YP_002835773.1| cell division protein FtsH [Corynebacterium aurimucosum ATCC 700975] gi|262183448|ref|ZP_06042869.1| cell division protein FtsH [Corynebacterium aurimucosum ATCC 700975] gi|227455082|gb|ACP33835.1| cell division protein FtsH [Corynebacterium aurimucosum ATCC 700975] Length = 818 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 29/198 (14%), Positives = 67/198 (33%), Gaps = 43/198 (21%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110 R V+L GP G+GK+ LA + ++ +S + + Sbjct: 201 RGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFKQAKQNSP 260 Query: 111 --VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGV 153 + +++ID + + L + ++ + +L+ A P Sbjct: 261 CIIFVDEIDAVGRQRGSGTGGGHDEREQTLNQLLVEMDGFGDREGVILIAATNRPDILDP 320 Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L+ + ++ PD E+++ D+ + + +A + +R + Sbjct: 321 AL------LRPGRFDRQIPVTNPDLAGREQILRVHAKDKPLAKEVDVAQ-LAKRTA-GMS 372 Query: 211 FAEKLVDKMDNLALSRGM 228 A L + ++ AL Sbjct: 373 GA-DLANVLNEAALLTAR 389 >gi|198420499|ref|XP_002126380.1| PREDICTED: similar to proteasome 26S ATPase subunit 3 [Ciona intestinalis] Length = 439 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 28/189 (14%), Positives = 62/189 (32%), Gaps = 50/189 (26%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V++ GP G+GK+ LA + +++ST L + I ++ Sbjct: 219 PPKGVLMYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKER 278 Query: 113 ------LEDIDLLD---------------------FNDTQLFHIINSIHQYDSSLLMTAR 145 ++++D + N F N I ++ A Sbjct: 279 KPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFEPYNDIK------VIAAT 332 Query: 146 TFPVSWGVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 L L S RL ++ +P+++ +++ R++ + + + R Sbjct: 333 NRVDILDPAL--LRSGRLD--RKIEFPVPNEEARARILQ--IHSRKMNVSADVNFEELAR 386 Query: 205 MERSLVFAE 213 A+ Sbjct: 387 CTDDFNGAQ 395 >gi|254449265|ref|ZP_05062712.1| ATPase, AAA family [gamma proteobacterium HTCC5015] gi|198261120|gb|EDY85418.1| ATPase, AAA family [gamma proteobacterium HTCC5015] Length = 443 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 74/180 (41%), Gaps = 35/180 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST---------RFSNIAKSLDSILI----DTRKPVL- 112 +I GP G+GK+ LA + ++ + +I ++D + D R VL Sbjct: 57 MIFWGPPGTGKTTLARLIAEYCDAEFMTLSAVLSGVKDIRAAVDEAKLRRRQDGRATVLF 116 Query: 113 LEDIDLLDFNDTQLF--HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 ++++ + + F HI + + + A T S+ + L SR++ + Sbjct: 117 VDEVHRFNKSQQDAFLPHI-----EDGTIFFVGATTENPSFELNNA-LLSRVR---TYVL 167 Query: 171 SLPDDDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 DDD +E+++ + D + ++ + +++ + A K+++ ++ A Sbjct: 168 KSFDDDDIEQIVDRALQDERDGLGQLGVRLEPEARELLLRSAD---GDARKVLNLLEVSA 224 >gi|226505536|ref|NP_001148485.1| 26S protease regulatory subunit S10B [Zea mays] gi|194702936|gb|ACF85552.1| unknown [Zea mays] gi|195619706|gb|ACG31683.1| 26S protease regulatory subunit S10B [Zea mays] Length = 400 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 31/196 (15%), Positives = 61/196 (31%), Gaps = 48/196 (24%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V+L GP G+GK+ LA + + ++ ++ I ++ Sbjct: 173 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFGYARDH 232 Query: 113 ------LEDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSW 151 +++ID + L ++N + ++ A P Sbjct: 233 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDELGKVKMIMATNRPDVL 292 Query: 152 GVCLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L RL ++I LP++ +V+ A I + E Sbjct: 293 DPAL--LRPGRLD--RKIEIPLPNEQSRMEVLKIHAAG------------IAKHGEIDYE 336 Query: 211 FAEKLVDKMDNLALSR 226 KL + + L Sbjct: 337 AVVKLAEGFNGADLRN 352 >gi|195492546|ref|XP_002094038.1| GE21612 [Drosophila yakuba] gi|194180139|gb|EDW93750.1| GE21612 [Drosophila yakuba] Length = 931 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 12/25 (48%), Positives = 16/25 (64%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDK 87 PSR ++L GP G GK+ LA S + Sbjct: 277 PSRGLLLHGPPGCGKTFLARAISGQ 301 Score = 39.4 bits (91), Expect = 0.41, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 PS V+ L GP G GK+ LA ++++ S L ++ + + + Sbjct: 684 PSGVL-LCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESERAV 732 >gi|189241497|ref|XP_967205.2| PREDICTED: similar to neuron navigator 2 [Tribolium castaneum] Length = 1801 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 24/46 (52%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110 R ++L G G+GK+ LA ++ + + A+++ + +D + Sbjct: 1484 RRLVLCGAPGTGKTHLATRLAEFHAQAQGRDPAEAVATFNVDNKSA 1529 >gi|166362932|ref|YP_001655205.1| cell division protein [Microcystis aeruginosa NIES-843] gi|166085305|dbj|BAG00013.1| cell division protein [Microcystis aeruginosa NIES-843] Length = 654 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 36/220 (16%), Positives = 72/220 (32%), Gaps = 58/220 (26%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ T FS A + + T Sbjct: 240 VLLVGPPGTGKTLLAKAVAGEAGVTFFSISASEFVELFVGTGAARVRDLFAQAKKNAPSI 299 Query: 111 VLLEDIDLL--------------DFNDTQLFHIINSIH----QYDSSLLMTARTFPVSWG 152 + ++++D + D + L ++ + + +++ A P + Sbjct: 300 IFIDELDAIGKSRSSGSGTSGSNDEREQTLNQLLTEMDGFSPKEAVVIVLAATNRPETLD 359 Query: 153 VCL--------------PDLCSRLK----AATVVKISLPDDDFLEKVIVKMFADRQIFID 194 L PDL RL A V++ D L+ + + + Sbjct: 360 AALLRPGRFDRQVLVDRPDLAGRLAILEIYAQRVQMGE--DVNLKAIATQTPGFAGADLA 417 Query: 195 KKL--AAYIVQRMERSLVFAEKLVDKMDN--LALSRGMGI 230 + AA + R R V + ++ L + + Sbjct: 418 NLVNEAALLAARNNREKVSQIDFKEAIERVIAGLEKKSRV 457 >gi|153871193|ref|ZP_02000427.1| ATP-dependent Clp protease ATP-binding subunit clpX [Beggiatoa sp. PS] gi|152072342|gb|EDN69574.1| ATP-dependent Clp protease ATP-binding subunit clpX [Beggiatoa sp. PS] Length = 186 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 49/125 (39%), Gaps = 31/125 (24%) Query: 14 DKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVH-------------------SAIEQAVR 54 D +KN+ +++ QL P+ + + +D ++ + Q+ Sbjct: 53 DSKKNEGEESQAHQLP--TPQEINLHLNDYVIGQDYAKKVLSVAVYNHYKRLDSNRQSEN 110 Query: 55 LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 ++ V+L+GP+G GK+ LA + RF + ++ T + E Sbjct: 111 DVEI----SKSNVLLIGPTGCGKTLLAETLA------RFLEVPFAMADATTLTEAGYVGE 160 Query: 115 DIDLL 119 D++ + Sbjct: 161 DVEHI 165 >gi|327350812|gb|EGE79669.1| ribosome biogenesis ATPase RIX7 [Ajellomyces dermatitidis ATCC 18188] Length = 725 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 23/46 (50%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 V+L GP G GK+ LA +++SR+ S L + + + + Sbjct: 501 VLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAV 546 Score = 39.0 bits (90), Expect = 0.55, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 27/57 (47%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P R V+L GP G GK+ +AN ++ + + A S+ S + + L E D Sbjct: 210 PPRGVLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIVSGMSGESEKALREHFDEA 266 >gi|322818611|gb|EFZ25968.1| mitochondrial ATP-dependent zinc metallopeptidase, putative [Trypanosoma cruzi] Length = 595 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 56/155 (36%), Gaps = 37/155 (23%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTR----------------KP 110 +LVGP G GK+ LA + ++ F D + + Sbjct: 160 ALLVGPPGCGKTMLAKAIAKEAGVNFFYATGSEFDEMYVGVGSRRVRELFAAAKANSPAL 219 Query: 111 VLLEDIDLLDFNDTQLFHII-----NSIHQY-------DSSLLMTARTFPVSWGVCLPDL 158 + +++ID L ++ H N + +S +++ A P + L Sbjct: 220 IFIDEIDALGGKRSRTDHAYSRMTLNQLLAEMDGFSSKESIIVLAATNTPDALDKAL--- 276 Query: 159 CSRL-KAATVVKISLPD----DDFLEKVIVKMFAD 188 +R + T + + PD ++ LE + K+ AD Sbjct: 277 -TRPGRFDTTISVDPPDMKGREEVLEVYLNKVKAD 310 >gi|320582342|gb|EFW96559.1| AAA-type ATPase [Pichia angusta DL-1] Length = 439 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 22/38 (57%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P ++L GP G+GKS LA + ++ ST FS + L Sbjct: 164 PVSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 201 >gi|320580205|gb|EFW94428.1| putative dynein heavy chain protein [Pichia angusta DL-1] Length = 4106 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 33/94 (35%), Gaps = 15/94 (15%) Query: 56 IDSWPSWPSRVVILVGPSGSGKSCLAN--IW-----------SDKSRSTRFSNIAKSLDS 102 ID P +ILVGPSGSGK+ L W S K F + L Sbjct: 2717 IDRVLKNPQGHMILVGPSGSGKTTLTKFVAWINGLSIHQLSVSRKYTLAEFDATLRELLR 2776 Query: 103 ILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQY 136 + K + ID +T +N++ Sbjct: 2777 RAAEGDKLCFI--IDESAILETAFLERMNTLLAN 2808 >gi|242052273|ref|XP_002455282.1| hypothetical protein SORBIDRAFT_03g007760 [Sorghum bicolor] gi|241927257|gb|EES00402.1| hypothetical protein SORBIDRAFT_03g007760 [Sorghum bicolor] Length = 664 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 12/28 (42%), Positives = 20/28 (71%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRS 90 P R++ L+GPSGSGK+ L N+ + + + Sbjct: 85 PGRLLALMGPSGSGKTTLLNVLAGQLTA 112 >gi|261198899|ref|XP_002625851.1| ribosome biogenesis ATPase RIX7 [Ajellomyces dermatitidis SLH14081] gi|239595003|gb|EEQ77584.1| ribosome biogenesis ATPase RIX7 [Ajellomyces dermatitidis SLH14081] Length = 751 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 23/46 (50%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 V+L GP G GK+ LA +++SR+ S L + + + + Sbjct: 527 VLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAV 572 Score = 39.0 bits (90), Expect = 0.55, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 27/57 (47%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P R V+L GP G GK+ +AN ++ + + A S+ S + + L E D Sbjct: 210 PPRGVLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIVSGMSGESEKALREHFDEA 266 >gi|225425863|ref|XP_002266185.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 825 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 41/108 (37%), Gaps = 29/108 (26%) Query: 60 PSW----PSRVVILVGPSGSGKSCLANIWSDK--------SRSTRFSNIAKSLDSILID- 106 P W P ++L GP G GK+ LA+ +++ S + S ++ + + + + Sbjct: 275 PRWLGVRPMAGILLHGPPGCGKTKLAHAIANETKVPFYKISATEVVSGVSGASEENIREL 334 Query: 107 -------TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSL---LMTA 144 V +++ID + N + + + LMT Sbjct: 335 FSKAYRTAPSIVFIDEIDAIASKRE------NLNREMERRIVTQLMTC 376 Score = 36.7 bits (84), Expect = 3.2, Method: Composition-based stats. Identities = 8/46 (17%), Positives = 20/46 (43%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 +L GP G GK+ +A ++++ + L + + + + Sbjct: 591 FLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAV 636 >gi|206586968|emb|CAQ17552.1| putative transposition helper protein (partial sequenc c terminus) [Ralstonia solanacearum MolK2] Length = 389 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 42/114 (36%), Gaps = 25/114 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+L+GPSG GK+ +A+ + ++ + +++ Sbjct: 231 VVLLGPSGVGKTHIASALAYRATQAGIKTRFITAADLMMQLATARQQNRLREFFNRAVIG 290 Query: 111 ---VLLEDIDLLDF--NDTQLFHIINSI--HQYDSSLLMTARTFPVSWGVCLPD 157 +++++I L F + LF N + ++++T+ W D Sbjct: 291 PRLLVIDEIGYLPFGREEADLF--FNVVAKRYERGAIVLTSNLPFTQWATAFAD 342 >gi|254380848|ref|ZP_04996214.1| AAA ATPase [Streptomyces sp. Mg1] gi|194339759|gb|EDX20725.1| AAA ATPase [Streptomyces sp. Mg1] Length = 422 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 49/164 (29%), Gaps = 34/164 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSR-----------STRF---SNIAKSLDSILIDTR 108 P R V+L GP G+GKS A+ + + + + S + + D I Sbjct: 195 PPRAVMLFGPPGTGKSTFAHAIASRLGWPFLELFPARLAAEYGLASGLNRRFDEIARLDH 254 Query: 109 KPVLLEDIDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 V +++++ + +L + D LL+ A + Sbjct: 255 VLVFIDEVEEIAGTRSGADATAVGVVNELLKAVVRFRGQDGRLLVCATNDVTTLDSAF-- 312 Query: 158 LCSRLKAAT---VVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198 L+ V+ I PD + A D Sbjct: 313 ----LRHGRFDYVLPIGPPDHRARTALWESYLARAGAEADSAAL 352 >gi|149045257|gb|EDL98343.1| Werner helicase interacting protein 1, isoform CRA_a [Rattus norvegicus] Length = 334 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 5/63 (7%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ LA+I ++ S+ + S + + + D+ N+ Sbjct: 257 PSLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSATNAKTND-----VRDVIKQAQNEK 311 Query: 125 QLF 127 F Sbjct: 312 SFF 314 >gi|126460718|ref|YP_001056996.1| AAA family ATPase, CDC48 subfamily protein [Pyrobaculum calidifontis JCM 11548] gi|126250439|gb|ABO09530.1| AAA family ATPase, CDC48 subfamily [Pyrobaculum calidifontis JCM 11548] Length = 731 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 28/203 (13%), Positives = 71/203 (34%), Gaps = 37/203 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTR-- 108 P + ++L+GP G+GK+ LA ++++ + + L I + + Sbjct: 212 PPKGILLIGPPGTGKTLLAKAVANEANAYFVAINGPEIMSKYYGESEARLREIFEEAKKN 271 Query: 109 --KPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + + +++ A P + Sbjct: 272 APAIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLQERGQVIVIGATNRPDA---V 328 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 P L + + I+ PD +++V R + + + + + A+ Sbjct: 329 DPALRRPGRFDREIWINPPDFKGRYEILV--IHTRNMPLGPDVDLRKLAEITHGFTGAD- 385 Query: 215 LVDKMDNLAL--SRGMGITRSLA 235 + + A + I L Sbjct: 386 -LAALAREAAMSALRRAIQSGLI 407 Score = 36.3 bits (83), Expect = 4.4, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 16/70 (22%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILIDTRKP 110 ++L GP G+GK+ LA + +S + + + + Sbjct: 491 ILLFGPPGTGKTLLAKAVATESGANFVAVRGPEIFSKWVGESEKMVREIFRKARMAAPAV 550 Query: 111 VLLEDIDLLD 120 + +++ID L Sbjct: 551 IFIDEIDALA 560 >gi|39577681|gb|AAR28448.1| Vps4p [Pichia angusta] Length = 439 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 22/38 (57%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P ++L GP G+GKS LA + ++ ST FS + L Sbjct: 164 PVSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 201 >gi|46198346|ref|YP_004013.1| Holliday junction DNA helicase B [Thermus thermophilus HB27] gi|47606090|sp|P61537|RUVB_THET2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|46195968|gb|AAS80386.1| holliday junction DNA helicase ruvB [Thermus thermophilus HB27] Length = 336 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 27/193 (13%), Positives = 74/193 (38%), Gaps = 29/193 (15%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLL 113 P ++L GP G GK+ LA++ + + + ++ + ++ + + Sbjct: 49 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLEEGDILFI 108 Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD---------------- 157 ++I L + H+ ++ + +++ + + LP Sbjct: 109 DEIHRLSRQAEE--HLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAP 166 Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 L SR ++ P++ L + +++ + I ++ A I +R ++ A++L Sbjct: 167 LLSRFGIVEHLEYYTPEE--LAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFR 224 Query: 218 KMDNLALSRGMGI 230 ++ + A G + Sbjct: 225 RVRDFAQVAGEEV 237 >gi|315925531|ref|ZP_07921741.1| exopolyphosphatase [Pseudoramibacter alactolyticus ATCC 23263] gi|315621072|gb|EFV01043.1| exopolyphosphatase [Pseudoramibacter alactolyticus ATCC 23263] Length = 652 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 47/140 (33%), Gaps = 45/140 (32%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ FS + + Sbjct: 231 VLLVGPPGTGKTMLAKAVAGEANVPFFSISGSEFVEMFVGMGASKVRDLFKQAKEKAPCI 290 Query: 111 VLLEDIDLLD---------FNDT------QLFHIINSIHQYDSSLLMTARTFPVSW---- 151 V +++ID + ND QL ++ + + +++ A P S Sbjct: 291 VFVDEIDAIGQKRAGGKFSGNDEREQTLNQLLTEMDGFDENNGVVVLAATNRPESLDPAL 350 Query: 152 ----------GVCLPDLCSR 161 V LPDL R Sbjct: 351 TRPGRFDRRVPVDLPDLKGR 370 >gi|317126219|ref|YP_004100331.1| IstB transposition helper protein [Intrasporangium calvum DSM 43043] gi|315590307|gb|ADU49604.1| IstB transposition helper protein [Intrasporangium calvum DSM 43043] Length = 273 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 42/105 (40%), Gaps = 14/105 (13%) Query: 67 VILVGPSGSGKSCLA---NIWSDKSRSTRFSNIAKSLDSI---------LIDTRKPVLLE 114 ++L+GP G GK+ LA + ++ + A L +I ++++ Sbjct: 120 ILLIGPPGVGKTHLAVGLARAAAQAGYRTYFTTAADLAAIEGRWATTMRFFAGPTCLVID 179 Query: 115 DIDLLDFNDTQLFHIINSIHQY--DSSLLMTARTFPVSWGVCLPD 157 ++ L + + Q +S+++T+ SWG L D Sbjct: 180 ELGYLPLPAEAASALFQVVSQRYLKTSIILTSNRGVGSWGEVLGD 224 >gi|302772841|ref|XP_002969838.1| hypothetical protein SELMODRAFT_171164 [Selaginella moellendorffii] gi|302806886|ref|XP_002985174.1| hypothetical protein SELMODRAFT_157152 [Selaginella moellendorffii] gi|300147002|gb|EFJ13668.1| hypothetical protein SELMODRAFT_157152 [Selaginella moellendorffii] gi|300162349|gb|EFJ28962.1| hypothetical protein SELMODRAFT_171164 [Selaginella moellendorffii] Length = 398 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + + ++ ++ I ++ E Sbjct: 171 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIVDKYIGESARLIRE 222 >gi|270340043|ref|ZP_06006828.2| replication-associated recombination protein A [Prevotella bergensis DSM 17361] gi|270332946|gb|EFA43732.1| replication-associated recombination protein A [Prevotella bergensis DSM 17361] Length = 424 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 62/168 (36%), Gaps = 22/168 (13%) Query: 67 VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSI-----------LIDTRKPVL- 112 IL GP G GK+ LA I + K S + + + ++ P+L Sbjct: 42 FILWGPPGVGKTTLAQIIAGMLKVPFFTLSAVTSGVKDVREVIERAKQGRFFNSGSPILF 101 Query: 113 LEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++I + L + L+ A T S+ V P L SR + + + Sbjct: 102 IDEIHRFSKSQQDSLL----GAVERGVVTLIGATTENPSFEVIRP-LLSRCQLYVLKSLE 156 Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 +D ++ + + D ++ + + M S A KL++ + Sbjct: 157 K--EDLMKILERAIHEDSELKKKDIVLQEVGAIMRYSGGDARKLLNIL 202 >gi|258543659|ref|YP_003189092.1| cell division ATP-dependent metalloprotease FtsH [Acetobacter pasteurianus IFO 3283-01] gi|256634737|dbj|BAI00713.1| cell division ATP-dependent metalloprotease FtsH [Acetobacter pasteurianus IFO 3283-01] gi|256637793|dbj|BAI03762.1| cell division ATP-dependent metalloprotease FtsH [Acetobacter pasteurianus IFO 3283-03] gi|256640847|dbj|BAI06809.1| cell division ATP-dependent metalloprotease FtsH [Acetobacter pasteurianus IFO 3283-07] gi|256643902|dbj|BAI09857.1| cell division ATP-dependent metalloprotease FtsH [Acetobacter pasteurianus IFO 3283-22] gi|256646957|dbj|BAI12905.1| cell division ATP-dependent metalloprotease FtsH [Acetobacter pasteurianus IFO 3283-26] gi|256650010|dbj|BAI15951.1| cell division ATP-dependent metalloprotease FtsH [Acetobacter pasteurianus IFO 3283-32] gi|256653000|dbj|BAI18934.1| cell division ATP-dependent metalloprotease FtsH [Acetobacter pasteurianus IFO 3283-01-42C] gi|256656054|dbj|BAI21981.1| cell division ATP-dependent metalloprotease FtsH [Acetobacter pasteurianus IFO 3283-12] Length = 645 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 66/198 (33%), Gaps = 47/198 (23%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ F+ + + Sbjct: 192 VLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEMFVGVGASRVRDMFEQGKKAAPCI 251 Query: 111 VLLEDIDLLDF----------NDTQLFHIINSIH-------QYDSSLLMTARTFPVSWGV 153 + +++ID + ++ + +N + + +L+ A P Sbjct: 252 IFIDEIDAVGRHRGAGMGGGNDERE--QTLNQMLVEMDGFESNEGVILIAATNRPDVLDP 309 Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L+ V + PD EK++ R++ + + I+ R Sbjct: 310 AL------LRPGRFDRQVVVPNPDVSGREKILRVHM--RKVPLASDVDPRIIARGTPGFS 361 Query: 211 FAEKLVDKMDNLALSRGM 228 A L + ++ ALS Sbjct: 362 GA-DLANLVNEAALSAAR 378 >gi|225682615|gb|EEH20899.1| DNA-dependent ATPase MGS1 [Paracoccidioides brasiliensis Pb03] Length = 553 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 34/219 (15%), Positives = 78/219 (35%), Gaps = 38/219 (17%) Query: 44 LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN-------- 95 LV + LI+ ++L G +G+GK+ +A + + S Sbjct: 154 LVGPS-GVLRGLIEQDR---VPSMVLWGGAGTGKTTIARVIAKMVGSRFVEINSTNSGVA 209 Query: 96 -----IAKSLDSILIDTRKPVLL-EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPV 149 A++ + + + +K +L ++I + +F ++ + +L+ T P Sbjct: 210 ECKKLFAEARNELSLSGKKTILFCDEIHRFSKSQQDVF--LSPVESGQITLIGTTTENPS 267 Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ------IFIDKKLAAYIVQ 203 + V L SR +S D + ++ + +D +L Y+ Sbjct: 268 -FKVQNA-LLSR---CRTFTLSKLTDQDIIMILNRALEVEGPNYSPSSLVDDELIKYLAA 322 Query: 204 RMERSLVFAEKLVD-KMD---NLALSR---GMGITRSLA 235 + + L++ MD +++ +TR+L Sbjct: 323 FADGDARTSLNLLELAMDLSHREGMTKDELKKSLTRTLV 361 >gi|238487902|ref|XP_002375189.1| ABC transporter, putative [Aspergillus flavus NRRL3357] gi|220700068|gb|EED56407.1| ABC transporter, putative [Aspergillus flavus NRRL3357] Length = 1389 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 9/99 (9%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P R+ LVG SG+GK+ L N + + + + L + +L D + Sbjct: 864 PGRLTALVGASGAGKTTLLNTLAQRINFGVVTAVE------LASKPQLLLFLDEPTSGLD 917 Query: 123 DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCLPDL 158 F+I + + ++L T DL Sbjct: 918 SLAAFNIVRFLRRLADAGQAILCTIHQPSAVLFEHFDDL 956 >gi|294659828|ref|XP_462254.2| DEHA2G16302p [Debaryomyces hansenii CBS767] gi|199434262|emb|CAG90750.2| DEHA2G16302p [Debaryomyces hansenii] Length = 786 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 44/238 (18%), Positives = 70/238 (29%), Gaps = 58/238 (24%) Query: 23 NKEEQLFFSFPRCLGISRDDL-----LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGK 77 +E +L + S D+ LV +I S IL G G GK Sbjct: 187 KREAELPLAQRLRPK-SLDEYYGQEKLVGE-NGILKNIIKSDQ---IPSFILWGVPGVGK 241 Query: 78 SCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLF----HIINSI 133 + LA I S S ++ + + ++ L T LF H N Sbjct: 242 TSLARIISQTSNCKFLEVSGAEGNAKRLREVFTMA-DNERRLTGRKTILFLDEIHRFNKA 300 Query: 134 HQYDSSLLM-------------TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180 Q LL+ T + L SR+ I P L++ Sbjct: 301 VQD---LLLPVIEKGIVTVIGATTENPSFTLNNA---LLSRM----HTFIMEP---LLKE 347 Query: 181 VIVKMFADRQI----------------FIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 IVK+ +R + +DK YI A +++ ++ Sbjct: 348 DIVKII-NRGLLVVNKSRKLVFGLHLIALDKDAIDYIASLSAGDSRVALNILESINAY 404 >gi|190347392|gb|EDK39649.2| hypothetical protein PGUG_03747 [Meyerozyma guilliermondii ATCC 6260] Length = 572 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 27/185 (14%), Positives = 62/185 (33%), Gaps = 38/185 (20%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRK------------- 109 +IL GP G GK+ LA+I + ++ S ++ +I + + Sbjct: 122 PSMILHGPPGVGKTTLASIIAKEAGYVMVELSATDATVSTIRRLSNEIRDENRKRTKLGT 181 Query: 110 -----PVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKA 164 V +++I + + + A TF + + P + SR Sbjct: 182 PHLRVCVFIDEIHRFSKVQQDFLLPF---VEEGLFVFLGATTFNPATRLR-PAIRSR--- 234 Query: 165 ATVVKISLPDDDFLEKVIVKMF-----ADR------QIFIDKKLAAYIVQRMERSLVFAE 213 + K++ D ++ V+ K R + ++ +I+ + A Sbjct: 235 CQLFKLNELTKDEVKSVLKKAALYENVRRRIVYGKQFLSFSSEVLNHIINTCKGDARSAV 294 Query: 214 KLVDK 218 +++ Sbjct: 295 NMIEM 299 >gi|154508553|ref|ZP_02044195.1| hypothetical protein ACTODO_01054 [Actinomyces odontolyticus ATCC 17982] gi|153798187|gb|EDN80607.1| hypothetical protein ACTODO_01054 [Actinomyces odontolyticus ATCC 17982] Length = 678 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 26/62 (41%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 R V+L GP G+GK+ LA + ++ + FS + + + E + N Sbjct: 210 RGVLLYGPPGTGKTLLAKAVAGEANAPFFSISGSEFMELYVGVGASRVRELFERAKKNAP 269 Query: 125 QL 126 + Sbjct: 270 AI 271 >gi|330990588|ref|ZP_08314545.1| Insertion sequence IS5376 putative ATP-binding protein [Gluconacetobacter sp. SXCC-1] gi|329762290|gb|EGG78777.1| Insertion sequence IS5376 putative ATP-binding protein [Gluconacetobacter sp. SXCC-1] Length = 243 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 47/108 (43%), Gaps = 23/108 (21%) Query: 67 VILVGPSGSGKSCLANIWS--------DKSRSTRFSNIAKSLDSILIDTRKPVLLE---D 115 V+L+G G+GK+ LA + K+R ++ +L+ R + + Sbjct: 89 VVLIGGPGTGKTHLATALAIQAITHHRKKARFWSTVDLVNALEQEKTANRAGQIADRLLR 148 Query: 116 IDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 +DL+ ++ LFH+++ +++ +S+++T WG Sbjct: 149 LDLVILDELGYLPFSASGGALLFHLLSRLYER-TSVIITTNLSFSEWG 195 >gi|291568075|dbj|BAI90347.1| cell division control protein CDC48 homolog [Arthrospira platensis NIES-39] Length = 611 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 23/48 (47%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 ++L GP G+GK+ LA + ++R+ L S + + + E Sbjct: 394 ILLWGPPGTGKTLLAKAVASQARANFIGINGPDLLSRWVGASEQAVRE 441 Score = 37.1 bits (85), Expect = 2.4, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 43/121 (35%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109 P+ V+LVGP G+GK+ A +++ + + L +I K Sbjct: 124 PTHGVLLVGPPGTGKTLTARALAEELGVNYIALVGPEVITKYYGEAEQKLRAIFEKAAKN 183 Query: 110 ---PVLLEDIDLLDFNDTQ------------LFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID L + + L +++ Q +L+ A P Sbjct: 184 APCIIFIDEIDSLAPDRSAVEGEVEKRLVAQLLSLMDGFSQNKGVILLGATNRPDHLDPA 243 Query: 155 L 155 L Sbjct: 244 L 244 >gi|302659175|ref|XP_003021281.1| hypothetical protein TRV_04594 [Trichophyton verrucosum HKI 0517] gi|291185172|gb|EFE40663.1| hypothetical protein TRV_04594 [Trichophyton verrucosum HKI 0517] Length = 747 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 12/28 (42%), Positives = 18/28 (64%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS 94 V+L GP G GK+ LA +++SR+ S Sbjct: 523 VLLWGPPGCGKTLLAKAVANESRANFIS 550 Score = 36.7 bits (84), Expect = 3.4, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 27/57 (47%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P R V+L GP G GK+ +AN ++ + + A S+ S + + L + + Sbjct: 214 PPRGVLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIISGMSGESEKALRDHFEEA 270 >gi|284054153|ref|ZP_06384363.1| AAA ATPase, central region [Arthrospira platensis str. Paraca] Length = 622 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 23/48 (47%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 ++L GP G+GK+ LA + ++R+ L S + + + E Sbjct: 405 ILLWGPPGTGKTLLAKAVASQARANFIGINGPDLLSRWVGASEQAVRE 452 Score = 37.1 bits (85), Expect = 2.4, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 43/121 (35%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109 P+ V+LVGP G+GK+ A +++ + + L +I K Sbjct: 135 PTHGVLLVGPPGTGKTLTARALAEELGVNYIALVGPEVITKYYGEAEQKLRAIFEKAAKN 194 Query: 110 ---PVLLEDIDLLDFNDTQ------------LFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID L + + L +++ Q +L+ A P Sbjct: 195 APCIIFIDEIDSLAPDRSAVEGEVEKRLVAQLLSLMDGFSQNKGVILLGATNRPDHLDPA 254 Query: 155 L 155 L Sbjct: 255 L 255 >gi|284031246|ref|YP_003381177.1| AFG1-family ATPase [Kribbella flavida DSM 17836] gi|283810539|gb|ADB32378.1| AFG1-family ATPase [Kribbella flavida DSM 17836] Length = 348 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 12/100 (12%) Query: 65 RVVILVGPSGSGKSC-LANIWSDKSR----------STRFSNIAKSLDSILIDTRKPVLL 113 + L G G GK+ LA++W S + + + + + + Sbjct: 87 PGIYLDGGFGVGKTHLLASLWHVSSGPKMYCTFVELTNLVGALGMRSAVDALSAYRLICI 146 Query: 114 EDIDLLDFNDTQLFH-IINSIHQYDSSLLMTARTFPVSWG 152 ++ +L D DT L ++ + + L T+ T P G Sbjct: 147 DEFELDDPGDTVLISRLLRQLVEAGVQLAATSNTLPDKLG 186 >gi|301098998|ref|XP_002898591.1| cell division protease ftsH [Phytophthora infestans T30-4] gi|262105016|gb|EEY63068.1| cell division protease ftsH [Phytophthora infestans T30-4] Length = 435 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 22/95 (23%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+L GPSG+GK+ LA + ++ A +L+ Sbjct: 209 VLLCGPSGTGKTLLARAVASEAGVAFLFCSASDFVEMLVGRGAARVRDLFTQASQYPQCI 268 Query: 111 VLLEDIDLLDFNDTQLFHIINSIHQYDSSL--LMT 143 + +++ID L L NS + + +L L+T Sbjct: 269 IFIDEIDALAKARGGL----NSNDEREQTLNQLLT 299 >gi|242036879|ref|XP_002465834.1| hypothetical protein SORBIDRAFT_01g046620 [Sorghum bicolor] gi|241919688|gb|EER92832.1| hypothetical protein SORBIDRAFT_01g046620 [Sorghum bicolor] Length = 763 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 20/42 (47%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL 104 P V+ L+GPSGSGK+ L +I ++ S D Sbjct: 195 PGEVLALMGPSGSGKTTLLSILGGRAGSGAVEGSISYNDEPY 236 >gi|239609886|gb|EEQ86873.1| ribosome biogenesis ATPase RIX7 [Ajellomyces dermatitidis ER-3] Length = 751 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 23/46 (50%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 V+L GP G GK+ LA +++SR+ S L + + + + Sbjct: 527 VLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAV 572 Score = 39.0 bits (90), Expect = 0.56, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 27/57 (47%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P R V+L GP G GK+ +AN ++ + + A S+ S + + L E D Sbjct: 210 PPRGVLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIVSGMSGESEKALREHFDEA 266 >gi|261195410|ref|XP_002624109.1| sister chromatid cohesion factor [Ajellomyces dermatitidis SLH14081] gi|239587981|gb|EEQ70624.1| sister chromatid cohesion factor [Ajellomyces dermatitidis SLH14081] gi|327349041|gb|EGE77898.1| sister chromatid cohesion factor [Ajellomyces dermatitidis ATCC 18188] Length = 957 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRF---SNIAKSLDSILIDTRKPVLLEDIDLLDF 121 +V++L GP G GK+ LA++ + ++ ++ +S D + R V E++ + Sbjct: 270 KVLLLTGPPGLGKTTLAHVCARQAGYEVLEINASDERSRDVVKGRIRDAVGTENVKGVSV 329 Query: 122 N 122 + Sbjct: 330 D 330 >gi|296803659|ref|XP_002842682.1| ribosome biogenesis ATPase RIX7 [Arthroderma otae CBS 113480] gi|238846032|gb|EEQ35694.1| ribosome biogenesis ATPase RIX7 [Arthroderma otae CBS 113480] Length = 743 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 12/28 (42%), Positives = 18/28 (64%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS 94 V+L GP G GK+ LA +++SR+ S Sbjct: 519 VLLWGPPGCGKTLLAKAVANESRANFIS 546 Score = 36.7 bits (84), Expect = 3.4, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 27/57 (47%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P R V+L GP G GK+ +AN ++ + + A S+ S + + L + + Sbjct: 209 PPRGVLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIISGMSGESEKALRDHFEEA 265 >gi|228976824|ref|ZP_04137237.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis Bt407] gi|228782920|gb|EEM31085.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis Bt407] Length = 582 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 31/198 (15%), Positives = 63/198 (31%), Gaps = 45/198 (22%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ FS + + Sbjct: 147 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 206 Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + + L + ++ + +++ A P L Sbjct: 207 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANEGIIIIAATNRPDILDPAL 266 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211 L+ + + PD + E V+ R +D+ + I R Sbjct: 267 ------LRPGRFDRQITVDRPDVNGREAVLKVHA--RNKPLDEHINLRAIATRTP-GFSG 317 Query: 212 AEKLVDKMDNLALSRGMG 229 A L + ++ AL Sbjct: 318 A-DLENLLNEAALVAARR 334 >gi|227548344|ref|ZP_03978393.1| ATP-binding protein [Corynebacterium lipophiloflavum DSM 44291] gi|227079662|gb|EEI17625.1| ATP-binding protein [Corynebacterium lipophiloflavum DSM 44291] Length = 265 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 24/143 (16%), Positives = 51/143 (35%), Gaps = 31/143 (21%) Query: 30 FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA---NIWSD 86 F F I R E A +W + VV+L GP G+GK+ LA I + Sbjct: 81 FDFTAQPSIDRT--------EIARLETGAWVATAENVVLL-GPPGTGKTHLATALGITAA 131 Query: 87 KSRSTRFSNIAKSLDSILIDTRK---------------PVLLEDIDLLDFNDTQ---LFH 128 + + A + L + ++++++ + F Sbjct: 132 QQGYRVLFDTAAGWINTLTEAHNTGKLETLLKRLNRYHLLIIDELGYIPVEADAANLFFQ 191 Query: 129 IINSIHQYDSSLLMTARTFPVSW 151 +++ +++ S+++T+ W Sbjct: 192 LVSRRYEHG-SIIVTSNLAFSQW 213 >gi|225557765|gb|EEH06050.1| ribosome biogenesis ATPase RIX7 [Ajellomyces capsulatus G186AR] Length = 751 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 23/46 (50%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 V+L GP G GK+ LA +++SR+ S L + + + + Sbjct: 527 VLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAV 572 Score = 39.0 bits (90), Expect = 0.56, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 27/57 (47%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P R V+L GP G GK+ +AN ++ + + A S+ S + + L E D Sbjct: 210 PPRGVLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIVSGMSGESEKALREHFDEA 266 >gi|224051966|ref|XP_002200452.1| PREDICTED: proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Taeniopygia guttata] Length = 360 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + ++ S+ I ++ E Sbjct: 137 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 188 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 189 ------MFNYARDHQ 197 >gi|209524864|ref|ZP_03273410.1| Vesicle-fusing ATPase [Arthrospira maxima CS-328] gi|209494743|gb|EDZ95052.1| Vesicle-fusing ATPase [Arthrospira maxima CS-328] Length = 610 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 23/48 (47%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 ++L GP G+GK+ LA + ++R+ L S + + + E Sbjct: 393 ILLWGPPGTGKTLLAKAVASQARANFIGINGPDLLSRWVGASEQAVRE 440 Score = 35.9 bits (82), Expect = 4.5, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRK- 109 P+ V+LVGP G+GK+ A +++ + + L +I K Sbjct: 123 PTHGVLLVGPPGTGKTLTARALAEELGVNYIALVGPEVITKYYGEAEQKLRAIFEKAAKN 182 Query: 110 ---PVLLEDIDLLDFNDTQ------------LFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID L N + L +++ Q +L+ A P Sbjct: 183 APCIIFIDEIDSLAPNRSAVEGEVEKRLVAQLLSLMDGFSQNKGVILLGATNRPDHLDPA 242 Query: 155 L 155 L Sbjct: 243 L 243 >gi|254418268|ref|ZP_05031992.1| IstB-like ATP binding protein [Brevundimonas sp. BAL3] gi|254418481|ref|ZP_05032205.1| IstB-like ATP binding protein [Brevundimonas sp. BAL3] gi|196184445|gb|EDX79421.1| IstB-like ATP binding protein [Brevundimonas sp. BAL3] gi|196184658|gb|EDX79634.1| IstB-like ATP binding protein [Brevundimonas sp. BAL3] Length = 225 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 48/114 (42%), Gaps = 22/114 (19%) Query: 65 RVVILVGPSGSGKSCLA-NIWSDKSRSTRFSNIAKSLD-------SILIDTRKPVL--LE 114 R ++LVG +G+GK+ LA I ++ R+ ++D + + L Sbjct: 82 RNIVLVGGTGTGKTHLATAIIANVVRAGARGRYFNTVDLVNRLEEETRLGKAGALAAHLC 141 Query: 115 DIDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 +D++ ++ LFH+I+ +++ +S+++T W D Sbjct: 142 RLDVVVLDELGYLPFARSGGQLLFHLISKLYER-TSVIVTTNLAFGEWPTVFGD 194 >gi|190891389|ref|YP_001977931.1| ATPase [Rhizobium etli CIAT 652] gi|190696668|gb|ACE90753.1| putative ATPase protein [Rhizobium etli CIAT 652] Length = 438 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 33/188 (17%), Positives = 69/188 (36%), Gaps = 31/188 (16%) Query: 54 RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPV 111 R+I+ S +I GP G+GK+ +A + S ++ + S I + + Sbjct: 47 RMIE---SGSLGSMIFWGPPGTGKTTVARLLSGEAGLAFEQISAIFSGVADLKKVFETA- 102 Query: 112 LLEDIDLLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPD 157 + +D T LF H N + + +L+ T Sbjct: 103 ---RLRRMDGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVILVGATTENPSFELNAA--- 156 Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKL 215 L SR + V+ D+ LE+++ + A Q + + ++ A +++ + L Sbjct: 157 LLSR---SRVLTFKSHDEQSLEELLKRAEAIEQKPLPLTEEARASLIRMADGDGRAVLTL 213 Query: 216 VDKMDNLA 223 +++ A Sbjct: 214 AEEVWRAA 221 >gi|125568968|gb|EAZ10483.1| hypothetical protein OsJ_00315 [Oryza sativa Japonica Group] Length = 433 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 47/141 (33%), Gaps = 42/141 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN----------------IAKSLDSILID 106 P R +L GP G+GKS LA + ++ ST FS +A + Sbjct: 162 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVANLFQMAREN 221 Query: 107 TRKPVLLEDIDLLDFND--------------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 + +++ID L L + H D L++ A P + Sbjct: 222 APSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDDKVLVLAATNTPYALD 281 Query: 153 ------------VCLPDLCSR 161 + LPDL +R Sbjct: 282 QAVRRRFDKRIYIPLPDLKAR 302 >gi|119194249|ref|XP_001247728.1| hypothetical protein CIMG_01499 [Coccidioides immitis RS] Length = 535 Score = 40.1 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 33/217 (15%), Positives = 72/217 (33%), Gaps = 43/217 (19%) Query: 49 IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS-------------N 95 LI++ +IL G +G+GK+ +A + + S Sbjct: 146 NGVLRGLIEADR---VPSMILWGGAGTGKTTIARVIATMVGSRFVEINSTSSGVAECKKI 202 Query: 96 IAKSLDSILIDTRKPVLL-EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 A++ + + + RK ++ ++I + +F + L+ A T S+ V Sbjct: 203 FAEARNELRLAGRKTIIFCDEIHRFSKSQQDVFL---GPVESGQVTLIGATTENPSFKVQ 259 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIF------IDKKLAAYIVQRMERS 208 L SR +S DD + ++ + +D++L Y+ + Sbjct: 260 NA-LLSR---CRTFTLSKLTDDDIISILNRALELEGPNYSPTNLVDEELIRYLAAFAD-- 313 Query: 209 LVFAEKLVDKMDNLALSRGMG----------ITRSLA 235 A ++ ++ +TR+L Sbjct: 314 -GDARTSLNLLELAMDLSKRPGMTKDELKKGLTRTLV 349 >gi|307110169|gb|EFN58405.1| hypothetical protein CHLNCDRAFT_140338 [Chlorella variabilis] Length = 881 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 20/50 (40%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P R +L GP G GK+ LA + + + S L + + + Sbjct: 552 PPRGALLYGPPGCGKTLLAQAAASRCGANFLSVRGPELLQKWLGESEAAV 601 Score = 38.6 bits (89), Expect = 0.79, Method: Composition-based stats. Identities = 11/27 (40%), Positives = 17/27 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSR 89 +R V+L GP GSGK+ L + ++R Sbjct: 278 AARGVLLHGPPGSGKTHLVRALAAEAR 304 >gi|302503873|ref|XP_003013896.1| hypothetical protein ARB_08008 [Arthroderma benhamiae CBS 112371] gi|291177462|gb|EFE33256.1| hypothetical protein ARB_08008 [Arthroderma benhamiae CBS 112371] Length = 743 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 12/28 (42%), Positives = 18/28 (64%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS 94 V+L GP G GK+ LA +++SR+ S Sbjct: 519 VLLWGPPGCGKTLLAKAVANESRANFIS 546 Score = 36.3 bits (83), Expect = 3.4, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 27/57 (47%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P R V+L GP G GK+ +AN ++ + + A S+ S + + L + + Sbjct: 210 PPRGVLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIISGMSGESEKALRDHFEEA 266 >gi|262380591|ref|ZP_06073745.1| recombination factor protein RarA [Acinetobacter radioresistens SH164] gi|262298037|gb|EEY85952.1| recombination factor protein RarA [Acinetobacter radioresistens SH164] Length = 423 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 68/176 (38%), Gaps = 31/176 (17%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAK-----SLDSILIDTRKP----VLLED 115 +I GP G GK+ +A + + S A L I+ ++ V +++ Sbjct: 43 PSIIFWGPPGVGKTTIALLLAQAVDRPFISLSALNTGVKELREIIAESGDLLTPVVFIDE 102 Query: 116 IDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 I + + ++N++ + L+ A T S+ V L SR V +++ D Sbjct: 103 IHRFNKSQQD--ALLNAV-EKGKITLIGATTENPSFEVNGA-LLSR---CQVYTLNILDS 155 Query: 176 DFLEKVIVKMFA------DRQIFID--KKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + ++ ++ K +R I I+ L + A K ++ +D +A Sbjct: 156 ESIQTLLDKALQTDEFLKERHIQIEEYDALIQFAA-------GDARKALNLLDLIA 204 >gi|237786214|ref|YP_002906919.1| cell division protein FtsH [Corynebacterium kroppenstedtii DSM 44385] gi|237759126|gb|ACR18376.1| cell division protein FtsH [Corynebacterium kroppenstedtii DSM 44385] Length = 910 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 29/198 (14%), Positives = 65/198 (32%), Gaps = 43/198 (21%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110 R V+L GP G+GK+ LA + ++ +S + + Sbjct: 207 RGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFTQAKENSP 266 Query: 111 --VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGV 153 + +++ID + + L + ++ +L+ A P Sbjct: 267 CIIFIDEIDAVGRQRGSGMGGGHDEREQTLNQLLVEMDGFGDRQGVILIAATNRPDILDP 326 Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L+ + ++ PD E+++ ++ + D L + +R + Sbjct: 327 AL------LRPGRFDRQIPVTNPDLAGREQILRVHAKNKPLGPDVDL-NSLAKRTA-GMS 378 Query: 211 FAEKLVDKMDNLALSRGM 228 A L + ++ AL Sbjct: 379 GA-DLANVLNEAALLTAR 395 >gi|269957363|ref|YP_003327152.1| IstB domain-containing protein ATP-binding protein [Xylanimonas cellulosilytica DSM 15894] gi|269306044|gb|ACZ31594.1| IstB domain protein ATP-binding protein [Xylanimonas cellulosilytica DSM 15894] Length = 256 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 55/144 (38%), Gaps = 31/144 (21%) Query: 30 FSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA-------- 81 F+ G+ RD L ++ + + VIL+GP G+GK+ LA Sbjct: 78 FNTTHQPGLRRDQLAHLAS----CAFVPKAEN-----VILLGPPGTGKTHLAIALGIKTI 128 Query: 82 -----NIWSDKSR-----STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ---LFH 128 +++ + +T + + + K ++++++ + F+ F Sbjct: 129 HAGNLALFNTATGWLDRLATAHAAGLLDAELRRLRRYKVLIIDEVGYIPFDHDAANLFFQ 188 Query: 129 IINSIHQYDSSLLMTARTFPVSWG 152 ++ + SL++T+ WG Sbjct: 189 LV-AARYEQGSLIITSNLPFGRWG 211 >gi|218288157|ref|ZP_03492456.1| type II secretion system protein E [Alicyclobacillus acidocaldarius LAA1] gi|218241516|gb|EED08689.1| type II secretion system protein E [Alicyclobacillus acidocaldarius LAA1] Length = 554 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 21/88 (23%) Query: 29 FFSFPRCLGISRDDLLVHSAIEQAV-RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87 F + + D+L A A R+I P V++ GP+GSGK+ Sbjct: 276 IFDLAKR-AFNLDELGFSPANRAAFERMITK----PYGAVLITGPTGSGKT--------- 321 Query: 88 SRSTRFSNIAKSLDSILIDTRKPVLLED 115 S + +L + + +ED Sbjct: 322 ------STLYAALKRLATPAVNVITIED 343 >gi|195145516|ref|XP_002013738.1| GL23235 [Drosophila persimilis] gi|194102681|gb|EDW24724.1| GL23235 [Drosophila persimilis] Length = 386 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 22/52 (42%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P R V+L GP G GK+ LA + + + S + + ++ + Sbjct: 166 PPRGVLLYGPPGCGKTMLAKAVAHHTTANFISVVGSEFVQKYLGEGPRMVRD 217 >gi|195108917|ref|XP_001999039.1| GI23296 [Drosophila mojavensis] gi|193915633|gb|EDW14500.1| GI23296 [Drosophila mojavensis] Length = 393 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + +L GP G+GK+ LA + + + ++ ++ I ++ E Sbjct: 170 PPKGCLLYGPPGTGKTLLARAIASQLDANFLKVVSSAIVDKYIGESARLIRE 221 >gi|229186639|ref|ZP_04313800.1| hypothetical protein bcere0004_41820 [Bacillus cereus BGSC 6E1] gi|118418782|gb|ABK87201.1| Recombination protein MgsA [Bacillus thuringiensis str. Al Hakam] gi|228596898|gb|EEK54557.1| hypothetical protein bcere0004_41820 [Bacillus cereus BGSC 6E1] Length = 474 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 29/203 (14%), Positives = 72/203 (35%), Gaps = 44/203 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS-----TRFSNIAKSLDSILIDT----RKPVLLEDID 117 +IL GP G+GK+ +A+ + + + ++ K ++ ++ + ++L+++ Sbjct: 90 MILYGPPGTGKTSIASAIAGSTGTPFRLLNAVTHNKKDMEVVVQEAKMHRHLVLILDEVH 149 Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 L D L H+ + L+ T + + SR + ++ Sbjct: 150 RLDKAKQDFLLPHL-----ESGLLTLIGATTSNPFHAINSAI---RSR---CQIFELHAL 198 Query: 174 DDDFLEKVIVKMFADRQ-------IFIDKKLAAYIVQRMERSLVFAEKLVDKM------- 219 +D L + + D++ + + + + + A ++ Sbjct: 199 TEDDLLIGLKRALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTT 258 Query: 220 -DNLALSRGMGITRSLAAEVLKE 241 D A IT +A E L++ Sbjct: 259 DDKAA-----EITLEIAEECLQK 276 >gi|114705175|ref|ZP_01438083.1| Proline-rich region:ATP/GTP-binding site motif A (P-loop) [Fulvimarina pelagi HTCC2506] gi|114539960|gb|EAU43080.1| Proline-rich region:ATP/GTP-binding site motif A (P-loop) [Fulvimarina pelagi HTCC2506] Length = 521 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 4/79 (5%) Query: 66 VVILVGPSGSGKSCLANIWSDKSRSTRFSN-IAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +++ G SGSGKS L +KS I D + + R ++ D + + Sbjct: 27 RLLVQGNSGSGKSHLLRRLLEKSAGWVQQAIIDPEGDFVTLADRYGHVVVDANRTPND-- 84 Query: 125 QLFHIINSIHQYDSSLLMT 143 L I N I Q+ +S+++T Sbjct: 85 -LARIANRIRQHRASVVLT 102 >gi|63054416|ref|NP_587809.2| 19S proteasome regulatory subunit Rpt4 (predicted) [Schizosaccharomyces pombe 972h-] gi|46397658|sp|O74445|PRS10_SCHPO RecName: Full=Probable 26S protease subunit rpt4 gi|157310490|emb|CAA20682.2| 19S proteasome regulatory subunit Rpt4 (predicted) [Schizosaccharomyces pombe] Length = 388 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 23/52 (44%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + ++ ++ I ++ E Sbjct: 165 PPKGVLLYGPPGTGKTLLARAVAASLGVNFLKVVSSAIVDKYIGESARIIRE 216 >gi|332882226|ref|ZP_08449856.1| ATPase, AAA family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679849|gb|EGJ52816.1| ATPase, AAA family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 425 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 56/139 (40%), Gaps = 24/139 (17%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRST--RFSNIAKSLDSI------------LIDTRKP 110 +I GP G+GK+ LANI + +S S I+ + + L T+ P Sbjct: 39 PSLIFWGPPGTGKTTLANIIAHQSNRAFYTLSAISSGIKEVREVIEQSKQSGGLFTTQNP 98 Query: 111 VL-LEDIDLLDF-NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168 ++ +++I + L + L+ A T S+ V +P L SR V Sbjct: 99 IVFIDEIHRFNKTQQDSLL----QAVEKGWITLIGATTENPSFEV-IPALLSR---CQVY 150 Query: 169 KISLPDDDFLEKVIVKMFA 187 ++ + LE+++ A Sbjct: 151 ILNAFERKDLEQLLQNAIA 169 >gi|326427214|gb|EGD72784.1| hypothetical protein PTSG_04511 [Salpingoeca sp. ATCC 50818] Length = 375 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 57/145 (39%), Gaps = 16/145 (11%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS-LDSILIDTRKPVLLEDIDLLD- 120 P + ++L GP G GK+ LA + + + + +D +++K L+E I L Sbjct: 118 PPKGLLLFGPPGCGKTLLARALAKECGCCFINVRPSTFMDKWFGESQK--LVEAIFTLAA 175 Query: 121 --------FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 ++ F S ++SS ++ A+ W D SR+ V + Sbjct: 176 KLQPSIIFIDEIDAFLRTRSSLDHESSAVIKAQFM-TLWDGFASDRTSRV--VVVAATNR 232 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKL 197 PDD ++ ++ I + + Sbjct: 233 PDDVD-RAILRRLSRSCHIGLPDAV 256 >gi|325272460|ref|ZP_08138843.1| gluconokinase [Pseudomonas sp. TJI-51] gi|324102405|gb|EGB99868.1| gluconokinase [Pseudomonas sp. TJI-51] Length = 179 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 24/59 (40%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 P ++++G +G GKSC+ + +S A + + L+D D + Sbjct: 4 PLSAIVVMGVAGCGKSCIGAAIAARSGGRLIEGDAFHPAENIRKMSAGIPLDDADRAGW 62 >gi|312880609|ref|ZP_07740409.1| phosphoribulokinase/uridine kinase [Aminomonas paucivorans DSM 12260] gi|310783900|gb|EFQ24298.1| phosphoribulokinase/uridine kinase [Aminomonas paucivorans DSM 12260] Length = 547 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 44/124 (35%), Gaps = 22/124 (17%) Query: 50 EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109 A + D R+V L GPSGSGK+ A + + ++ SLD +D Sbjct: 272 RMARAICDRP---SVRLVCLAGPSGSGKTTTARRLQIQLQVCGRHPVSISLDDYFVDRED 328 Query: 110 PV----------LLEDIDLLDFNDTQLFHIINSIHQYDSSL----LMTARTFP-VSWGVC 154 LE +DL N+ H+ + + L +T + P + Sbjct: 329 TPRDEKGDYDFEALEALDLKLINE----HLEALLAGEEVQLPKFDFVTGQRAPGKKLRLR 384 Query: 155 LPDL 158 DL Sbjct: 385 QGDL 388 >gi|308503911|ref|XP_003114139.1| CRE-RPT-1 protein [Caenorhabditis remanei] gi|308261524|gb|EFP05477.1| CRE-RPT-1 protein [Caenorhabditis remanei] Length = 435 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 43/144 (29%), Gaps = 45/144 (31%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109 P + V+L GP G+GK+ A ++++ + I L + Sbjct: 210 PPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 269 Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147 + ++ID + + +IN + + + +LM Sbjct: 270 KACLIFFDEIDAVGGARFDDGQGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 329 Query: 148 ------PVSW----GVCLPDLCSR 161 P LPDL R Sbjct: 330 DPALMRPGRLDRKVEFALPDLAGR 353 >gi|299753795|ref|XP_002911915.1| prsS7 [Coprinopsis cinerea okayama7#130] gi|298410465|gb|EFI28421.1| prsS7 [Coprinopsis cinerea okayama7#130] Length = 455 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 30/216 (13%), Positives = 75/216 (34%), Gaps = 42/216 (19%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + ++L GP G+GK+ A ++++ +T I L + ++ Sbjct: 230 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARSK 289 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQ---YDSSLLMTARTFPVSW 151 +++D + + +IN + + ++ A P + Sbjct: 290 KACIIFFDEVDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 349 Query: 152 GVCLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM--ERS 208 L L RL V+ SLPD+D ++ R + +++ + ++ R+ + Sbjct: 350 DPAL--LRPGRLD--RRVEFSLPDNDGRAHILRIHA--RSMSVERDIRFDLIARLCPNTT 403 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQ 244 + + A+ + + + L ++ Sbjct: 404 GAELRSVATEAGMFAIRARRKV--ATERDFLDAVEK 437 >gi|284166620|ref|YP_003404899.1| 26S proteasome subunit P45 family [Haloterrigena turkmenica DSM 5511] gi|284016275|gb|ADB62226.1| 26S proteasome subunit P45 family [Haloterrigena turkmenica DSM 5511] Length = 410 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 28/64 (43%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P V+L GP G+GK+ LA ++++ +T L I ++ + ++ Sbjct: 185 PPSGVLLYGPPGTGKTMLAKAVANETDATFIKMAGSELVRKFIGEGSRLVRDLFEMARER 244 Query: 123 DTQL 126 + + Sbjct: 245 EPAI 248 >gi|254581002|ref|XP_002496486.1| ZYRO0D01210p [Zygosaccharomyces rouxii] gi|238939378|emb|CAR27553.1| ZYRO0D01210p [Zygosaccharomyces rouxii] Length = 427 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 14/32 (43%), Positives = 21/32 (65%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P+ ++L GP G+GKS LA + ++ ST FS Sbjct: 156 PTSGILLYGPPGTGKSYLAKAVATEANSTFFS 187 >gi|228905862|ref|ZP_04069760.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis IBL 200] gi|228937368|ref|ZP_04100015.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228822326|gb|EEM68307.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228853802|gb|EEM98561.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis IBL 200] Length = 585 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 31/198 (15%), Positives = 63/198 (31%), Gaps = 45/198 (22%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ FS + + Sbjct: 150 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 209 Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + + L + ++ + +++ A P L Sbjct: 210 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANEGIIIIAATNRPDILDPAL 269 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211 L+ + + PD + E V+ R +D+ + I R Sbjct: 270 ------LRPGRFDRQITVDRPDVNGREAVLKVHA--RNKPLDEHINLRAIATRTP-GFSG 320 Query: 212 AEKLVDKMDNLALSRGMG 229 A L + ++ AL Sbjct: 321 A-DLENLLNEAALVAARR 337 >gi|258510315|ref|YP_003183749.1| type II secretion system protein E [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477041|gb|ACV57360.1| type II secretion system protein E [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 554 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 21/88 (23%) Query: 29 FFSFPRCLGISRDDLLVHSAIEQAV-RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDK 87 F + + D+L A A R+I P V++ GP+GSGK+ Sbjct: 276 IFDLAKR-AFNLDELGFSPANRAAFERMITK----PYGAVLITGPTGSGKT--------- 321 Query: 88 SRSTRFSNIAKSLDSILIDTRKPVLLED 115 S + +L + + +ED Sbjct: 322 ------STLYAALKRLATPAVNVITIED 343 >gi|291294612|ref|YP_003506010.1| ATP-dependent metalloprotease FtsH [Meiothermus ruber DSM 1279] gi|290469571|gb|ADD26990.1| ATP-dependent metalloprotease FtsH [Meiothermus ruber DSM 1279] Length = 626 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 22/48 (45%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 V+LVGP GSGK+ +A + +++ + + + + + Sbjct: 190 VLLVGPPGSGKTHIARAVAGEAKVPFIAASGSDFVEMFVGVGAARVRD 237 >gi|224078565|ref|XP_002305558.1| predicted protein [Populus trichocarpa] gi|222848522|gb|EEE86069.1| predicted protein [Populus trichocarpa] Length = 431 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 15/32 (46%), Positives = 20/32 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P R +L GP G+GKS LA + ++ ST FS Sbjct: 160 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFS 191 >gi|219888017|gb|ACL54383.1| unknown [Zea mays] gi|223949273|gb|ACN28720.1| unknown [Zea mays] gi|238010334|gb|ACR36202.1| unknown [Zea mays] Length = 435 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 15/32 (46%), Positives = 20/32 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P R +L GP G+GKS LA + ++ ST FS Sbjct: 164 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFS 195 >gi|251794362|ref|YP_003009093.1| ATPase AAA [Paenibacillus sp. JDR-2] gi|247541988|gb|ACS99006.1| AAA ATPase central domain protein [Paenibacillus sp. JDR-2] Length = 594 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 12/69 (17%) Query: 32 FPRCLGISRDDL-----LVHSAIEQAVRLIDSWPSW------PSRVVILVGPSGSGKSCL 80 P G + DD +V +A V L+ + R ++L GP G+GKS L Sbjct: 74 LPGETGATWDDYRGNPEIVENAKRI-VSLLRGVKDFKKMGGEAIRGLLLCGPPGTGKSYL 132 Query: 81 ANIWSDKSR 89 A + +++++ Sbjct: 133 AQVIANEAQ 141 >gi|167630476|ref|YP_001680975.1| ATPase, putative [Heliobacterium modesticaldum Ice1] gi|167593216|gb|ABZ84964.1| ATPase, putative [Heliobacterium modesticaldum Ice1] Length = 441 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 67/175 (38%), Gaps = 32/175 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ- 125 IL GP G+GK+ +A + + + S + A + ++ I V E + L FN + Sbjct: 55 FILYGPPGTGKTTIARLIAQTTESPFVTLSAVTANTSDIKK---VAKEAEERLSFNQKRT 111 Query: 126 -LF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N Q D +L++ T L SRL+ V + Sbjct: 112 ILFIDEIHRFNKAQQDLLLPIVEDGTLILIGATTENPLYELNAA---LLSRLR---VYLL 165 Query: 171 SLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDK 218 ++ L ++ + D R + + ++ A IVQ + A ++D Sbjct: 166 QPLKEEELLSLLKRALTDSERGLGLSGNALTEEALALIVQAAKGDARAALTILDM 220 >gi|163737147|ref|ZP_02144565.1| type I secretion system ATPase [Phaeobacter gallaeciensis BS107] gi|163740440|ref|ZP_02147834.1| type I secretion system ATPase [Phaeobacter gallaeciensis 2.10] gi|161386298|gb|EDQ10673.1| type I secretion system ATPase [Phaeobacter gallaeciensis 2.10] gi|161389751|gb|EDQ14102.1| type I secretion system ATPase [Phaeobacter gallaeciensis BS107] Length = 576 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL 113 P + + ++GPSGSGKS LA + + R + LD +D P +L Sbjct: 359 PGQAIGVIGPSGSGKSTLAR---ALTGAWRPAAGTVRLDGASLDQYAPEVL 406 >gi|163786201|ref|ZP_02180649.1| ATPase, AAA family protein [Flavobacteriales bacterium ALC-1] gi|159878061|gb|EDP72117.1| ATPase, AAA family protein [Flavobacteriales bacterium ALC-1] Length = 425 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 48/140 (34%), Gaps = 24/140 (17%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS---------------TRFSNIAKSLDSILIDTRK 109 +IL GP G GK+ LANI +++S + AK + Sbjct: 40 PSLILWGPPGIGKTTLANIIANESERPFFKLSAINSGVKDIREVIDKAKKSGGLFTAKNP 99 Query: 110 PVLLEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168 + +++I + L + L+ A T S+ V L SR V Sbjct: 100 ILFIDEIHRFSKSQQDSLL----EAVEKGWVTLIGATTENPSFEVISA-LLSR---CQVY 151 Query: 169 KISLPDDDFLEKVIVKMFAD 188 ++ LE ++ + + Sbjct: 152 TLNAFSKADLEALLQRAIKE 171 >gi|169849566|ref|XP_001831486.1| ATPase [Coprinopsis cinerea okayama7#130] gi|116507438|gb|EAU90333.1| ATPase [Coprinopsis cinerea okayama7#130] Length = 396 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 53/152 (34%), Gaps = 36/152 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V+L GP G+GK+ LA + + ++ ++ I V+ Sbjct: 174 PPKGVLLYGPPGTGKTLLARAVAATLNTNFLKVVSSAIVDKYIGESARVVREMFGYAREH 233 Query: 113 ------LEDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSW 151 +++ID + L ++N + L+ A P + Sbjct: 234 EPCVIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGRTKLIMATNRPDTL 293 Query: 152 GVCLPDLC-SRLKAATVVKISLPDDDFLEKVI 182 L L RL ++I LP++ +++ Sbjct: 294 DPAL--LRPGRLD--RKIEIPLPNEQARLEIL 321 >gi|34557255|ref|NP_907070.1| cell division cycle protein 48-related protein [Wolinella succinogenes DSM 1740] gi|34482971|emb|CAE09970.1| CELL DIVISION CYCLE PROTEIN 48-RELATED PROTEIN [Wolinella succinogenes] Length = 319 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 28/80 (35%), Gaps = 14/80 (17%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 ++L GP G GKS A + + +T F+ + + + + Sbjct: 63 AGGGILLYGPPGCGKSYFARAIAGECGATFFNVGIDQILDMY--------------VGNS 108 Query: 123 DTQLFHIINSIHQYDSSLLM 142 + L H+ S ++L Sbjct: 109 EKNLKHLFQSARNVKPAILF 128 >gi|320536058|ref|ZP_08036116.1| phage putative tail component protein [Treponema phagedenis F0421] gi|320147108|gb|EFW38666.1| phage putative tail component protein [Treponema phagedenis F0421] Length = 678 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 66/205 (32%), Gaps = 51/205 (24%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110 R V+LVGP G+GK+ LA + ++ F + + Sbjct: 239 RGVLLVGPPGTGKTLLARAVAGEAGVPFFRISGSDFVEMFVGVGASRVRDLFKQAREKAP 298 Query: 111 --VLLEDIDLLDFNDTQLFHIINSIHQYDSSL-----------------LMTARTFPVSW 151 + ++++D + + + INS + + +L L+ A P Sbjct: 299 CIIFIDELDAIGKSRI---NSINSNDEREQTLNQLLVEMDGFDNTTGLILLAATNRPDVL 355 Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERS 208 L L+ V + PD E ++ + + + + V R+ Sbjct: 356 DPAL------LRPGRFDRQVVVDRPDVKGREAILKIHAKN--VKLSPDVDLKAVARITGG 407 Query: 209 LVFAEKLVDKMDNLAL---SRGMGI 230 A L + ++ AL G + Sbjct: 408 YSGA-DLANVINEAALLAVRSGRKV 431 >gi|330925922|ref|XP_003301253.1| hypothetical protein PTT_12704 [Pyrenophora teres f. teres 0-1] gi|311324199|gb|EFQ90653.1| hypothetical protein PTT_12704 [Pyrenophora teres f. teres 0-1] Length = 535 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 70/193 (36%), Gaps = 23/193 (11%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 ++L G G+GK+ +A + ++ S S + S + +D+ L T Sbjct: 154 PSMVLWGRPGTGKTTIARLIANTSGSRFVEINSTSTRLEQVRAIFAEASQDL-RLTGRKT 212 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 +F H + + + L+ A T S+ + L SR + Sbjct: 213 IVFCDELHRFSKTQQDAFLGPVESGTITLIAATTENPSFKIISA-LLSR---CRTFTLDD 268 Query: 173 PDDDFLEKVIVKMFADRQIF---IDKKLAAYIVQRMERSLVFAEKLVD---KMDNLALSR 226 +D L +++ + A +DK + AY + + A L++ + N A Sbjct: 269 LKEDDLVQILERAMAAENCTSPILDKSMLAYFARFSDGDARTALNLLELAMSLANQADMT 328 Query: 227 GMGITRSLAAEVL 239 I +SL ++ Sbjct: 329 KEKIQQSLTKTLV 341 >gi|308272185|emb|CBX28792.1| Cell division cycle protein 48 homolog AF_1297 [uncultured Desulfobacterium sp.] Length = 711 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 59/162 (36%), Gaps = 37/162 (22%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILIDTRKP 110 V+L GP G GK+ +A + ++ + FS ++ K + Sbjct: 218 VLLYGPPGCGKTLIARAIAHETEANFFSISGPEIIHKFYGESEAHLRKIFEEATRKGPSI 277 Query: 111 VLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158 + L++ID + QL +++ +++ + +++ A P + P L Sbjct: 278 LFLDEIDAIAPRRENVVGDVEKRVVAQLLALMDGLNKRQNVIVIAATNIPNALD---PAL 334 Query: 159 C--SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198 R V+ I PD +++ R + + K + Sbjct: 335 RRPGRFDREIVIPI--PDRRGRLEILE--IHSRGMPLAKDVL 372 >gi|301610192|ref|XP_002934633.1| PREDICTED: peroxisome biogenesis factor 1 [Xenopus (Silurana) tropicalis] Length = 1205 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 20/78 (25%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRST--------------------RFSNIAKSLDSI 103 S V+L GP GSGKS LA ++ + ++ + Sbjct: 585 SGGVLLCGPKGSGKSTLAKALCKEASEQLEAHVEEIDCKLLKGKNVENIIQTLEEAFEEA 644 Query: 104 LIDTRKPVLLEDIDLLDF 121 +LL+D+D + Sbjct: 645 AWRQPSVILLDDLDQIAG 662 >gi|300711240|ref|YP_003737054.1| cell division control protein 48 [Halalkalicoccus jeotgali B3] gi|299124923|gb|ADJ15262.1| cell division control protein 48 [Halalkalicoccus jeotgali B3] Length = 701 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 23/59 (38%) Query: 54 RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 L + + P V+L GP G+GK+ LA + +S L + + + Sbjct: 470 ELFEKTATEPPSGVLLYGPPGTGKTLLARAIASESGVNFIHVAGPELLDRYVGESEKAV 528 >gi|296333157|ref|ZP_06875610.1| recombination factor protein RarA [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675337|ref|YP_003867009.1| putative helicase associated protein (ATPase, AAA family) [Bacillus subtilis subsp. spizizenii str. W23] gi|296149355|gb|EFG90251.1| recombination factor protein RarA [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413581|gb|ADM38700.1| putative helicase associated protein (ATPase, AAA family) [Bacillus subtilis subsp. spizizenii str. W23] Length = 421 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 28/197 (14%), Positives = 66/197 (33%), Gaps = 32/197 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKS-------RSTR--FSNIAKSLDSILIDTRKPVLLEDID 117 +IL GP G GK+ +A + + + ++ + + ++L+++ Sbjct: 41 MILYGPPGIGKTSIATAIAGSTSIAFRKLNAVINNKKDMEIVAQEAKMSGQVILILDEVH 100 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 LD + +L+ A T + P + SR + ++ + Sbjct: 101 RLDKGKQDFLLPY---LENGMIILIGATTANPYHAIN-PAIRSR---TQIFELEPLTPEL 153 Query: 178 LEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG- 229 +++ + + D R + ID + + ++ ++ LS Sbjct: 154 IKQALERAIHDEHRGLGTYSVSIDDQAMEHFAHGCG---GDVRSALNALELAVLSTKESA 210 Query: 230 -----ITRSLAAEVLKE 241 IT A E L++ Sbjct: 211 DGVIHITLETAEECLQK 227 >gi|289432492|ref|YP_003462365.1| Holliday junction DNA helicase RuvB [Dehalococcoides sp. GT] gi|288946212|gb|ADC73909.1| Holliday junction DNA helicase RuvB [Dehalococcoides sp. GT] Length = 362 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 37/200 (18%), Positives = 76/200 (38%), Gaps = 31/200 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTR----FSNIAKSLDSILIDTR----KPVLLEDIDL 118 V+L GP G GK+ L++I + + I + D I T + +++I Sbjct: 72 VLLYGPPGLGKTTLSHIIALEMGVNIRITSGPAIERQGDLAAILTNLKPFDILFIDEIHR 131 Query: 119 LDFNDTQLFHIINSIHQYDSSLLMTARTF-PVSWGVCLPD----------------LCSR 161 L N ++ + + + +M + S + LP L R Sbjct: 132 LSRNVEEVLYP---AMEDYALDIMVGKGPGARSLRLKLPHFTLIGATTRYAMLSAPLRDR 188 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 + + ++ D++ + ++ + + D+ I R + A +L+ ++ + Sbjct: 189 FGS--IFRLDFYDEEAIHDIVRRSARILGVEADENGLHQIACRSRGTPRVANRLLRRVRD 246 Query: 222 LALSRGMG-ITRSLAAEVLK 240 A +G G IT +AAE L Sbjct: 247 YAQVKGNGLITADIAAESLA 266 >gi|228963166|ref|ZP_04124336.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis serovar sotto str. T04001] gi|228796551|gb|EEM43989.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus thuringiensis serovar sotto str. T04001] Length = 585 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 31/198 (15%), Positives = 63/198 (31%), Gaps = 45/198 (22%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ FS + + Sbjct: 150 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 209 Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + + L + ++ + +++ A P L Sbjct: 210 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANEGIIIIAATNRPDILDPAL 269 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211 L+ + + PD + E V+ R +D+ + I R Sbjct: 270 ------LRPGRFDRQITVDRPDVNGREAVLKVHA--RNKPLDEHINLRAIATRTP-GFSG 320 Query: 212 AEKLVDKMDNLALSRGMG 229 A L + ++ AL Sbjct: 321 A-DLENLLNEAALVAARR 337 >gi|224826932|ref|ZP_03700031.1| AAA ATPase central domain protein [Lutiella nitroferrum 2002] gi|224600919|gb|EEG07103.1| AAA ATPase central domain protein [Lutiella nitroferrum 2002] Length = 439 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 43/191 (22%), Positives = 69/191 (36%), Gaps = 25/191 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIA-----KSLDSILIDTRKPVLLEDIDLLDF 121 +IL GP G GK+ LA I + + A K + + + + + + F Sbjct: 50 MILWGPPGVGKTTLARILAHSFDAEFIPLSAVFSGVKDIREAVDRAQAVLQRDGRHTILF 109 Query: 122 NDTQLFHIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKISL 172 D H N Q D+ L L+T A T S+ V L SR A V ++ Sbjct: 110 VDEV--HRFNKSQQ-DAFLPYVESGLLTFIGATTENPSFEVNSA-LLSR---AQVYVLNA 162 Query: 173 PDDDFLEKVIVKMFAD---RQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMG 229 DD + + + A + D A + + L+++ A +R + Sbjct: 163 LADDDFKALFARAVASGALPGLTFDDSALATLSGYADGDARRFLNLLEQTRTAASARHVE 222 Query: 230 -ITRSLAAEVL 239 I AEVL Sbjct: 223 HIDADFLAEVL 233 >gi|158321332|ref|YP_001513839.1| ATP-dependent metalloprotease FtsH [Alkaliphilus oremlandii OhILAs] gi|158141531|gb|ABW19843.1| ATP-dependent metalloprotease FtsH [Alkaliphilus oremlandii OhILAs] Length = 623 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 44/141 (31%), Gaps = 46/141 (32%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 +LVGP G+GK+ LA + ++ FS + + Sbjct: 201 ALLVGPPGTGKTLLARAVAGEANVPFFSISGSEFVEMFVGMGAAKVRDLFKQANEKAPCI 260 Query: 111 VLLEDIDL----------LDFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151 V +++ID + ND QL ++ +++ A P S Sbjct: 261 VFIDEIDTIGKKRDNGSGIGGNDEREQTLNQLLTEMDGFDGKKGVVILAATNRPESLDKA 320 Query: 152 -----------GVCLPDLCSR 161 V LPDL R Sbjct: 321 LLRPGRFDRRIPVELPDLAGR 341 >gi|145296692|ref|YP_001139513.1| hypothetical protein cgR_2597 [Corynebacterium glutamicum R] gi|140846612|dbj|BAF55611.1| hypothetical protein [Corynebacterium glutamicum R] Length = 853 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 34/206 (16%), Positives = 66/206 (32%), Gaps = 49/206 (23%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110 R V+L GP G+GK+ LA + ++ +S + + Sbjct: 199 RGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFKQAKENSP 258 Query: 111 --VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFP----- 148 + +++ID + D + L + ++ +LM A P Sbjct: 259 CIIFVDEIDAVGRARGSGMGGGHDEREQTLNQLLVEMDGFGDRQGVILMAATNRPDVLDP 318 Query: 149 ---------VSWGVCLPDLCSRLKAATVVKISLP--DDDFLEKVIVKMFADRQIFIDKKL 197 V PDL R + V P D ++ + + + L Sbjct: 319 ALLRPGRFDRQIPVTNPDLRGREQILEVHAKGKPFALDADIKALAKRTAGMSGADLANVL 378 Query: 198 --AAYIVQRMERSLVFAEKLVDKMDN 221 AA + R+ +++ A+ L + D Sbjct: 379 NEAALLTARVGGNVITADALEEATDR 404 >gi|125524360|gb|EAY72474.1| hypothetical protein OsI_00329 [Oryza sativa Indica Group] Length = 433 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 47/141 (33%), Gaps = 42/141 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN----------------IAKSLDSILID 106 P R +L GP G+GKS LA + ++ ST FS +A + Sbjct: 162 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVANLFQMAREN 221 Query: 107 TRKPVLLEDIDLLDFND--------------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 + +++ID L L + H D L++ A P + Sbjct: 222 APSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDDKVLVLAATNTPYALD 281 Query: 153 ------------VCLPDLCSR 161 + LPDL +R Sbjct: 282 QAVRRRFDKRIYIPLPDLKAR 302 >gi|94499677|ref|ZP_01306214.1| hypothetical protein RED65_01550 [Oceanobacter sp. RED65] gi|94428431|gb|EAT13404.1| hypothetical protein RED65_01550 [Oceanobacter sp. RED65] Length = 443 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 57/179 (31%), Gaps = 35/179 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRF--SNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +I GP G GK+ LA I ++ + S + + I K + + D Sbjct: 52 MIFWGPPGVGKTTLAMILANYVNAQFISVSAVMDGVKEIRAAVDKARMAQQQDRPSL--- 108 Query: 125 QLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N + + + + T L SR A V K+ Sbjct: 109 -LFVDEVHRFNKSQQDAFLPYVEDGTFIFIGATTENPSFELNSA---LLSR---ARVYKL 161 Query: 171 SLPDDDFLEKVIVKMFADRQ------IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + D + +++ Q + + +V+ + A ++ ++ A Sbjct: 162 RSLEHDDIRQLLEHAVRTDQQLNSIGLQFENGALDRLVRVAD---GDARTALNLLELAA 217 >gi|113475969|ref|YP_722030.1| vesicle-fusing ATPase [Trichodesmium erythraeum IMS101] gi|110167017|gb|ABG51557.1| Vesicle-fusing ATPase [Trichodesmium erythraeum IMS101] Length = 639 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 54/156 (34%), Gaps = 39/156 (25%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL-------------- 112 ++L G G+GK+ LA + ++++ + L S + + + Sbjct: 411 ILLWGEPGTGKTLLAKAVASQAQANFIAVNGPELLSKWVGAAEEAVRELFSKARQVSPCV 470 Query: 113 --LEDIDLLDFND--------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156 +++ID L QL ++ + LL+ A P + L Sbjct: 471 IFIDEIDTLAPARGKTMGDSGVSDRLVGQLLTELDGLRDCTQLLLVGATNRPDALDPAL- 529 Query: 157 DLCSRLKAA---TVVKISLPDDDFLEKVIVKMFADR 189 L+A +K+ LPD +++ DR Sbjct: 530 -----LRAGRLDLQIKVDLPDQASRLEILKVHNQDR 560 Score = 37.4 bits (86), Expect = 1.9, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 43/121 (35%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTRKP 110 PSR V+LVGP G+GK+ A +++ + L I +K Sbjct: 138 PSRGVLLVGPPGTGKTLTAKAIAEELGLNYIAINGPEVMSKYYGEAEGKLRDIFAKAKKS 197 Query: 111 ----VLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + + QL +++ + LL+ A P Sbjct: 198 APCLIFIDEIDSIAPDRSKVEGEVEKRLVAQLLGLMDGFEVLEGVLLLAATNRPDHIDPA 257 Query: 155 L 155 L Sbjct: 258 L 258 >gi|327286230|ref|XP_003227834.1| PREDICTED: 26S protease regulatory subunit 10B-like, partial [Anolis carolinensis] Length = 382 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + ++ S+ I ++ E Sbjct: 159 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 210 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 211 ------MFNYARDHQ 219 >gi|308322419|gb|ADO28347.1| 26S protease regulatory subunit s10b [Ictalurus furcatus] Length = 389 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + ++ S+ I ++ E Sbjct: 166 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 217 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 218 ------MFNYARDHQ 226 >gi|297297857|ref|XP_001099493.2| PREDICTED: 26S protease regulatory subunit S10B-like, partial [Macaca mulatta] Length = 352 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + ++ S+ I ++ E Sbjct: 180 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 231 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 232 ------MFNYARDHQ 240 >gi|255081266|ref|XP_002507855.1| predicted protein [Micromonas sp. RCC299] gi|226523131|gb|ACO69113.1| predicted protein [Micromonas sp. RCC299] Length = 412 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 22/48 (45%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 V+L GP G+GK+ +A + ++ + L + I ++ + Sbjct: 196 VLLYGPPGTGKTLIARACAAQTNAAYLKLAGPLLVQMFIGDGAKLVRD 243 >gi|219888287|gb|ACL54518.1| unknown [Zea mays] Length = 435 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 47/141 (33%), Gaps = 42/141 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN----------------IAKSLDSILID 106 P R +L GP G+GKS LA + ++ ST FS +A + Sbjct: 164 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVANLFQMAREN 223 Query: 107 TRKPVLLEDIDLLDFND--------------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 + +++ID L L + H D L++ A P + Sbjct: 224 APSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDDKVLVLAATNTPYALD 283 Query: 153 ------------VCLPDLCSR 161 + LPDL +R Sbjct: 284 QAVRRRFDKRIYIPLPDLKAR 304 >gi|168017225|ref|XP_001761148.1| 26S proteasome regulatory complex, ATPase RPT4 [Physcomitrella patens subsp. patens] gi|162687488|gb|EDQ73870.1| 26S proteasome regulatory complex, ATPase RPT4 [Physcomitrella patens subsp. patens] Length = 392 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + + ++ ++ I ++ E Sbjct: 165 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIVDKYIGESARLIRE 216 >gi|146162295|ref|XP_001009196.2| 26S proteasome subunit P45 family protein [Tetrahymena thermophila] gi|146146457|gb|EAR88951.2| 26S proteasome subunit P45 family protein [Tetrahymena thermophila SB210] Length = 395 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 20/48 (41%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 V+L GP G+GK+ LA + + T L I ++ E Sbjct: 175 VLLYGPPGTGKTLLARAIAHHTDCTFIRVSGSELVQKYIGEGARMVRE 222 >gi|145532457|ref|XP_001451984.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124419661|emb|CAK84587.1| unnamed protein product [Paramecium tetraurelia] Length = 393 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 20/48 (41%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 V+L GP G+GK+ LA + + T L I ++ E Sbjct: 173 VLLYGPPGTGKTLLARAIAHHTDCTFIRVSGSELVQKYIGEGARMVRE 220 >gi|145531483|ref|XP_001451508.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124419163|emb|CAK84111.1| unnamed protein product [Paramecium tetraurelia] Length = 393 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 20/48 (41%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 V+L GP G+GK+ LA + + T L I ++ E Sbjct: 173 VLLYGPPGTGKTLLARAIAHHTDCTFIRVSGSELVQKYIGEGARMVRE 220 >gi|145486497|ref|XP_001429255.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124396346|emb|CAK61857.1| unnamed protein product [Paramecium tetraurelia] Length = 393 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 20/48 (41%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 V+L GP G+GK+ LA + + T L I ++ E Sbjct: 173 VLLYGPPGTGKTLLARAIAHHTDCTFIRVSGSELVQKYIGEGARMVRE 220 >gi|118490708|ref|XP_001238663.1| atp-dependent metalloprotease ftsh, putative [Eimeria tenella] gi|109238446|emb|CAK51410.1| atp-dependent metalloprotease ftsh, putative [Eimeria tenella] Length = 296 Score = 40.1 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 24/76 (31%), Gaps = 14/76 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G+GK+ LA + ++ + + + + L Sbjct: 99 ILLHGPPGTGKTLLARAIAGEAGVPFLHASGSDFEEMFVGVGASRI-----------RSL 147 Query: 127 FHIINSIHQYDSSLLM 142 F + LL Sbjct: 148 FA---AARAKGRCLLF 160 >gi|330880369|gb|EGH14518.1| transposase/IS protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 243 Score = 40.1 bits (93), Expect = 0.31, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 41/114 (35%), Gaps = 25/114 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILID-------------------T 107 ++ +GPSG GKS LA + ++ + +++ Sbjct: 104 IVFLGPSGVGKSHLAIALAYRAVMAGIKTRFVTAADLMLQLTAAHRQERLKEYFSRVVMA 163 Query: 108 RKPVLLEDIDLLDF--NDTQLFHIINSI--HQYDSSLLMTARTFPVSWGVCLPD 157 +++++I L F ++ LF N + SL++T+ W D Sbjct: 164 PGLLVIDEIGYLPFGRDEANLF--FNVVAKRYEQGSLILTSNLPFTQWAGTFAD 215 >gi|313887624|ref|ZP_07821306.1| cell division protease FtsH [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846233|gb|EFR33612.1| cell division protease FtsH [Peptoniphilus harei ACS-146-V-Sch2b] Length = 611 Score = 40.1 bits (93), Expect = 0.31, Method: Composition-based stats. Identities = 36/196 (18%), Positives = 65/196 (33%), Gaps = 43/196 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 +LVGP G+GK+ LA + +S FS + + Sbjct: 200 ALLVGPPGTGKTLLARAVAGESHVPFFSIAGSEFVEMFVGRGAAKVRELFDEAKKNAPCI 259 Query: 111 VLLEDIDLLD---------FNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + ND QL ++ +++ A P L Sbjct: 260 IFIDEIDTIGKKRDSAGISGNDEREQTLNQLLTEMDGFDGNIGIVMLAATNRPEILDPAL 319 Query: 156 PDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA-- 212 L R V++ D I+K+ A R ++ Y + + RS A Sbjct: 320 --LRPGRFDRQIRVELPTLKD---RIEILKVHA-RSYKMEDD-IDYSL--IARSTAGASG 370 Query: 213 EKLVDKMDNLALSRGM 228 +L + ++ AL Sbjct: 371 AQLANILNEAALRAVR 386 >gi|291296065|ref|YP_003507463.1| putative adenylate/guanylate cyclase [Meiothermus ruber DSM 1279] gi|290471024|gb|ADD28443.1| putative adenylate/guanylate cyclase [Meiothermus ruber DSM 1279] Length = 1071 Score = 40.1 bits (93), Expect = 0.31, Method: Composition-based stats. Identities = 11/29 (37%), Positives = 17/29 (58%) Query: 54 RLIDSWPSWPSRVVILVGPSGSGKSCLAN 82 R +++ + R ++L GP G GKS LA Sbjct: 222 RALEAVQAGAGRRLVLYGPMGVGKSHLAR 250 >gi|290474662|ref|YP_003467542.1| ATPase, chaperone subunit of serine protease [Xenorhabdus bovienii SS-2004] gi|289173975|emb|CBJ80762.1| ATPase, chaperone subunit of serine protease [Xenorhabdus bovienii SS-2004] Length = 423 Score = 40.1 bits (93), Expect = 0.31, Method: Composition-based stats. Identities = 20/132 (15%), Positives = 49/132 (37%), Gaps = 30/132 (22%) Query: 2 NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55 ++++E+ VP ++++ P P + DD ++ Sbjct: 46 DIIREEIKELVPHRERSALPT----------PHEIRQHLDDYVIGQETAKKVLAVAVYNH 95 Query: 56 IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107 + + ++L+GP+GSGK+ LA + R+ ++ ++ T Sbjct: 96 YKRLRNGDTNNGVELGKSNILLIGPTGSGKTLLAETLA------RYLDVPFTMADATTLT 149 Query: 108 RKPVLLEDIDLL 119 + ED++ + Sbjct: 150 EAGYVGEDVENI 161 >gi|259503655|ref|ZP_05746557.1| AAA family ATPase [Lactobacillus antri DSM 16041] gi|259168374|gb|EEW52869.1| AAA family ATPase [Lactobacillus antri DSM 16041] Length = 433 Score = 40.1 bits (93), Expect = 0.31, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 54/138 (39%), Gaps = 22/138 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKP-------VLLEDID 117 +IL GP G+GK+ +A+ + +R + + S + I + +LL++I Sbjct: 41 MILYGPPGTGKTSIASAIAGSTRYAFRKLNAATDSKKDLQIVAEEAKMSGTVILLLDEIH 100 Query: 118 LL--DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 L D L H+ + +L+ A T + P + SR + + Sbjct: 101 RLDKAKQDFLLPHL-----ESGRIVLIGATTENPYISIN-PAIRSR---TQIFPVHPLSI 151 Query: 176 DFLEKVIVKMFAD--RQI 191 D ++ I + D R + Sbjct: 152 DDIKVAIARALTDKERGL 169 >gi|251773179|gb|EES53732.1| AAA ATPase [Leptospirillum ferrodiazotrophum] Length = 451 Score = 40.1 bits (93), Expect = 0.31, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 58/145 (40%), Gaps = 28/145 (19%) Query: 62 WPSRVVILVGPSGSGKS------------C-LANIWSDKSR-STRFSNIAKSLDSILIDT 107 WPS ++L GP G+GKS A++ + + + +A+ Sbjct: 49 WPS--MVLFGPPGTGKSGFVELLPRLLSDHTFAHLNATTAGVADLRPELARGERRRREGG 106 Query: 108 RKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV 167 + V+L++I + ++ +++ + LL + T P + +P L SRL + Sbjct: 107 QHVVVLDEIHTWSKSQQEV--LLSGVETGQIILLGLSNTTP--YAALIPPLASRL---LL 159 Query: 168 VKISLPDDDFLEKVIVKMFADRQIF 192 D++ L ++ DR + Sbjct: 160 FPFQPLDENALSTLL-----DRGLH 179 >gi|255545124|ref|XP_002513623.1| ATP binding protein, putative [Ricinus communis] gi|223547531|gb|EEF49026.1| ATP binding protein, putative [Ricinus communis] Length = 835 Score = 40.1 bits (93), Expect = 0.31, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 21/32 (65%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P R ++L GP G+GK+ LA ++++ ++ + Sbjct: 556 PCRGILLFGPPGTGKTMLAKAIANEAGASFIN 587 >gi|194865492|ref|XP_001971456.1| GG14421 [Drosophila erecta] gi|190653239|gb|EDV50482.1| GG14421 [Drosophila erecta] Length = 935 Score = 40.1 bits (93), Expect = 0.31, Method: Composition-based stats. Identities = 12/25 (48%), Positives = 16/25 (64%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDK 87 PSR ++L GP G GK+ LA S + Sbjct: 279 PSRGLLLHGPPGCGKTFLARAISGQ 303 Score = 39.4 bits (91), Expect = 0.44, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 PS V+ L GP G GK+ LA ++++ S L ++ + + + Sbjct: 687 PSGVL-LCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESERAV 735 >gi|168003543|ref|XP_001754472.1| 26S proteasome regulatory complex, ATPase RPT4 [Physcomitrella patens subsp. patens] gi|162694574|gb|EDQ80922.1| 26S proteasome regulatory complex, ATPase RPT4 [Physcomitrella patens subsp. patens] Length = 392 Score = 40.1 bits (93), Expect = 0.31, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + + ++ ++ I ++ E Sbjct: 165 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIVDKYIGESARLIRE 216 >gi|168029577|ref|XP_001767302.1| 26S proteasome regulatory complex, ATPase RPT4 [Physcomitrella patens subsp. patens] gi|162681557|gb|EDQ67983.1| 26S proteasome regulatory complex, ATPase RPT4 [Physcomitrella patens subsp. patens] Length = 392 Score = 40.1 bits (93), Expect = 0.31, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + + ++ ++ I ++ E Sbjct: 165 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIVDKYIGESARLIRE 216 >gi|115816457|ref|XP_801708.2| PREDICTED: similar to Valosin containing protein isoform 2, partial [Strongylocentrotus purpuratus] gi|115970724|ref|XP_001186005.1| PREDICTED: similar to Valosin containing protein, partial [Strongylocentrotus purpuratus] Length = 537 Score = 40.1 bits (93), Expect = 0.31, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 239 PSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKA 295 >gi|169597869|ref|XP_001792358.1| hypothetical protein SNOG_01726 [Phaeosphaeria nodorum SN15] gi|111070255|gb|EAT91375.1| hypothetical protein SNOG_01726 [Phaeosphaeria nodorum SN15] Length = 524 Score = 40.1 bits (93), Expect = 0.31, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 3/57 (5%) Query: 53 VRLIDSWPSWPSRVVILVGPSGSGKSCLAN--IWSDKSRSTRFSNIAKSLDSILIDT 107 ID P + V+ L G GSGK+ LA + + R+ S I Sbjct: 272 CSWIDRSPG-SNPVLWLQGIPGSGKTHLAATVVHEARKRAHSLFAFLTYTHSTNISA 327 >gi|18447485|gb|AAL68305.1| RE47719p [Drosophila melanogaster] Length = 501 Score = 40.1 bits (93), Expect = 0.31, Method: Composition-based stats. Identities = 12/25 (48%), Positives = 16/25 (64%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDK 87 PSR ++L GP G GK+ LA S + Sbjct: 282 PSRGLLLHGPPGCGKTFLARAISGQ 306 >gi|328849304|gb|EGF98487.1| ATP-dependent 26S proteasome regulatory subunit [Melampsora larici-populina 98AG31] Length = 480 Score = 40.1 bits (93), Expect = 0.31, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 65/181 (35%), Gaps = 44/181 (24%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V+L GP G+GK+ A ++++ +T I L + ++ Sbjct: 249 PPKGVMLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTK 308 Query: 113 ------LEDIDLLDFN------------DTQLFHIINS---------IHQYDSSLLMTAR 145 ++ID + + +IN I +S +L+ A Sbjct: 309 KACIIFFDEIDAIGGARHDDGQGGDNEVQRTMLELINQLDGFDPRGNIKVVESLVLIMAT 368 Query: 146 TFPVSWGVCLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR 204 P + L L RL V+ SLPD + ++ R + +++ + ++ R Sbjct: 369 NRPDTLDPAL--LRPGRLD--RRVEFSLPDTEGRANILKIHA--RSMSVERNIRYELIAR 422 Query: 205 M 205 + Sbjct: 423 L 423 >gi|302781947|ref|XP_002972747.1| hypothetical protein SELMODRAFT_173081 [Selaginella moellendorffii] gi|300159348|gb|EFJ25968.1| hypothetical protein SELMODRAFT_173081 [Selaginella moellendorffii] Length = 547 Score = 40.1 bits (93), Expect = 0.31, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 62 WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 W SR ++L GP G+GK+ L +++ + S A S+ + VL + Sbjct: 41 W-SRGLLLHGPPGTGKTTLVRAIAEECNAHLISLSAGSVHKAYAGESERVLRD 92 >gi|302823417|ref|XP_002993361.1| hypothetical protein SELMODRAFT_137043 [Selaginella moellendorffii] gi|300138792|gb|EFJ05546.1| hypothetical protein SELMODRAFT_137043 [Selaginella moellendorffii] Length = 547 Score = 40.1 bits (93), Expect = 0.31, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 62 WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 W SR ++L GP G+GK+ L +++ + S A S+ + VL + Sbjct: 41 W-SRGLLLHGPPGTGKTTLVRAIAEECNAHLISLSAGSVHKAYAGESERVLRD 92 >gi|259416571|ref|ZP_05740491.1| recombination factor protein RarA [Silicibacter sp. TrichCH4B] gi|259348010|gb|EEW59787.1| recombination factor protein RarA [Silicibacter sp. TrichCH4B] Length = 443 Score = 40.1 bits (93), Expect = 0.31, Method: Composition-based stats. Identities = 34/204 (16%), Positives = 70/204 (34%), Gaps = 27/204 (13%) Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDID 117 S +I GP G GK+ +A + + ++ + S I + + I Sbjct: 56 ASGSLSSLIFWGPPGVGKTTIARLLAQETDLHFVQISAIFTGVPDLKKVFEAA----KIR 111 Query: 118 LLDFNDTQLF----HIINSIHQYD-------SSLLM---TARTFPVSWGVCLPDLCSRLK 163 + T LF H N Q ++L+ T + SR + Sbjct: 112 RQNGQGTLLFVDEIHRFNKAQQDGFLPHMEDGTILLVGATTENPSFELNAAV---LSRSQ 168 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + ++SL D + L + K R + + + + Q + L++++ A Sbjct: 169 VLVLERLSLADLERLTQRAEKALERR-LPLLPEARDALHQMADGDGRALLNLIEQV--AA 225 Query: 224 LSRGMGITR-SLAAEVLKETQQCD 246 + R +LA +++ + D Sbjct: 226 WKVDQPLGREALATRLMRRAAKYD 249 >gi|255710811|ref|XP_002551689.1| KLTH0A05324p [Lachancea thermotolerans] gi|238933066|emb|CAR21247.1| KLTH0A05324p [Lachancea thermotolerans] Length = 832 Score = 40.1 bits (93), Expect = 0.31, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 64/166 (38%), Gaps = 50/166 (30%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 247 PPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEKN 306 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + +++ID + QL +++ + + +++ A P S Sbjct: 307 APAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNVVVIAATNRPNSIDPA 366 Query: 152 -----------GVCLPDLCSRLKAATVVKIS-----LPDDDFLEKV 181 + +PD RL+ V++I L DD LE + Sbjct: 367 LRRFGRFDREVDIGIPDATGRLE---VLRIHTKNMKLADDVDLEVL 409 Score = 37.1 bits (85), Expect = 2.6, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 16/74 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 PS+ V+ GP G+GK+ LA + + + SNI D Sbjct: 520 PSKGVLFYGPPGTGKTLLAKAVATEVSANFISVKGPELLSMWYGESESNIRDIFDKARAA 579 Query: 107 TRKPVLLEDIDLLD 120 V L+++D + Sbjct: 580 APTVVFLDELDSIA 593 >gi|222623676|gb|EEE57808.1| hypothetical protein OsJ_08386 [Oryza sativa Japonica Group] Length = 1167 Score = 40.1 bits (93), Expect = 0.31, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 50/144 (34%), Gaps = 43/144 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS--------------ILIDTR 108 P + V+L GP G+GK+ LA + ++ + S +L S Sbjct: 910 PCKGVLLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASRL 969 Query: 109 KPVLL--EDIDLLDFNDTQLF-H-----IIN---------SIHQYDSSLLMTA------- 144 PV++ +++D L F H + N + L++ A Sbjct: 970 APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDGLRSKESQRILILGATNRPFDL 1029 Query: 145 -----RTFPVSWGVCLPDLCSRLK 163 R P V LPD +R+K Sbjct: 1030 DDAVIRRLPRRIYVDLPDAQNRMK 1053 >gi|218190265|gb|EEC72692.1| hypothetical protein OsI_06267 [Oryza sativa Indica Group] Length = 400 Score = 40.1 bits (93), Expect = 0.31, Method: Composition-based stats. Identities = 31/196 (15%), Positives = 61/196 (31%), Gaps = 48/196 (24%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V+L GP G+GK+ LA + + ++ ++ I ++ Sbjct: 173 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFGYARDH 232 Query: 113 ------LEDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSW 151 +++ID + L ++N + ++ A P Sbjct: 233 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDELGKVKMIMATNRPDVL 292 Query: 152 GVCLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L RL ++I LP++ +V+ A I + E Sbjct: 293 DPAL--LRPGRLD--RKIEIPLPNEQARMEVLKIHAAG------------IAKHGEIDYE 336 Query: 211 FAEKLVDKMDNLALSR 226 KL + + L Sbjct: 337 AVVKLAEGFNGADLRN 352 >gi|206588863|emb|CAQ35825.1| probable transposase protein [Ralstonia solanacearum MolK2] Length = 751 Score = 40.1 bits (93), Expect = 0.31, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 47/130 (36%), Gaps = 30/130 (23%) Query: 51 QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110 ++ I+ + V+L+GPSG GK+ +A+ + ++ + +++ Sbjct: 582 ASLAFIERAEN-----VVLLGPSGVGKTHIASALAYRATQAGIKTRFITAADLMMQLATA 636 Query: 111 -------------------VLLEDIDLLDF--NDTQLFHIINSI--HQYDSSLLMTARTF 147 +++++I L F + LF N + ++++T+ Sbjct: 637 RQQNRLREFFNRAVIGPRLLVIDEIGYLPFGREEADLF--FNVVAKRYERGAIVLTSNLP 694 Query: 148 PVSWGVCLPD 157 W D Sbjct: 695 FTQWATAFAD 704 >gi|226531095|ref|NP_001141554.1| hypothetical protein LOC100273669 [Zea mays] gi|194705054|gb|ACF86611.1| unknown [Zea mays] Length = 260 Score = 40.1 bits (93), Expect = 0.31, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 19/32 (59%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + V+L GP G+GK+ LA + +S + + Sbjct: 119 PQKGVLLYGPPGTGKTMLAKAIARESGAVFIN 150 >gi|167519841|ref|XP_001744260.1| hypothetical protein [Monosiga brevicollis MX1] gi|163777346|gb|EDQ90963.1| predicted protein [Monosiga brevicollis MX1] Length = 410 Score = 40.1 bits (93), Expect = 0.31, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL GP G+GK+ LA ++++ +T + L ++ E Sbjct: 189 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYSGEGPKLVRE 240 >gi|115642732|ref|XP_001184600.1| PREDICTED: similar to fidgetin-like 1, partial [Strongylocentrotus purpuratus] gi|115661295|ref|XP_001196555.1| PREDICTED: similar to fidgetin-like 1, partial [Strongylocentrotus purpuratus] Length = 221 Score = 40.1 bits (93), Expect = 0.31, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 16/82 (19%) Query: 34 RCLGISRDDLLVHSAIEQAVRLIDS---WP----------SWPSRVVILVGPSGSGKSCL 80 I DD+ + +E A + I WP P + ++L GP G+GK+ + Sbjct: 49 HGPPIHWDDI---AGLEFAKKTIKEIVVWPMLRPDIFTGLRGPPKGLLLFGPPGTGKTLI 105 Query: 81 ANIWSDKSRSTRFSNIAKSLDS 102 + +S +T FS A SL S Sbjct: 106 GKCIASQSGATFFSISASSLTS 127 >gi|84489998|ref|YP_448230.1| proteasome-activating nucleotidase [Methanosphaera stadtmanae DSM 3091] gi|84373317|gb|ABC57587.1| proteasome-activating nucleotidase [Methanosphaera stadtmanae DSM 3091] Length = 406 Score = 40.1 bits (93), Expect = 0.31, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 23/50 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P + V+ GP G+GK+ LA + ++ +T +A I ++ Sbjct: 182 PPKGVLFYGPPGTGKTLLAKAVAHETNATFIKIVASEFVKKYIGEGSRLV 231 >gi|30249052|ref|NP_841122.1| recombination factor protein RarA [Nitrosomonas europaea ATCC 19718] gi|30138669|emb|CAD84964.1| Uncharacterized ATPase related to the helicase subunit of the Holliday junction resolvase [Nitrosomonas europaea ATCC 19718] Length = 439 Score = 40.1 bits (93), Expect = 0.31, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 63/175 (36%), Gaps = 27/175 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID---LLDFND 123 +IL GP GSGK+ LA + + + + A I +E Sbjct: 52 MILWGPPGSGKTTLARLMAHAFDAEFIAISAVLSGVKDIRE----AIERAQITLQRTGRA 107 Query: 124 TQLF----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVVKI 170 T LF H N Q D+ L L+T A T S+ V L SR A V + Sbjct: 108 TLLFVDEVHRFNKAQQ-DAFLPHVEQGLITFIGATTENPSFEVNGA-LLSR---AQVYAL 162 Query: 171 SLPDDDFLEKVIVKMFADRQIFIDKK--LAAYIVQRMERSLVFAEKLVDKMDNLA 223 D L ++ + + + ++ + ++ + L++++ N A Sbjct: 163 KALTDQELHQLFERARSIAMLDLEFENTAIELLIGFADGDARRLLNLLEQVQNAA 217 >gi|115444877|ref|NP_001046218.1| Os02g0199900 [Oryza sativa Japonica Group] gi|11094192|dbj|BAB17625.1| 26S proteasome regulatory particle triple-A ATPase subunit4 [Oryza sativa Japonica Group] gi|46390379|dbj|BAD15843.1| 26S proteasome regulatory particle triple-A ATPase subunit4 [Oryza sativa Japonica Group] gi|49388371|dbj|BAD25481.1| 26S proteasome regulatory particle triple-A ATPase subunit4 [Oryza sativa Japonica Group] gi|113535749|dbj|BAF08132.1| Os02g0199900 [Oryza sativa Japonica Group] gi|125581193|gb|EAZ22124.1| hypothetical protein OsJ_05786 [Oryza sativa Japonica Group] Length = 400 Score = 40.1 bits (93), Expect = 0.31, Method: Composition-based stats. Identities = 31/196 (15%), Positives = 61/196 (31%), Gaps = 48/196 (24%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V+L GP G+GK+ LA + + ++ ++ I ++ Sbjct: 173 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFGYARDH 232 Query: 113 ------LEDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSW 151 +++ID + L ++N + ++ A P Sbjct: 233 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDELGKVKMIMATNRPDVL 292 Query: 152 GVCLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L RL ++I LP++ +V+ A I + E Sbjct: 293 DPAL--LRPGRLD--RKIEIPLPNEQARMEVLKIHAAG------------IAKHGEIDYE 336 Query: 211 FAEKLVDKMDNLALSR 226 KL + + L Sbjct: 337 AVVKLAEGFNGADLRN 352 >gi|327302246|ref|XP_003235815.1| AAA family ATPase [Trichophyton rubrum CBS 118892] gi|326461157|gb|EGD86610.1| AAA family ATPase [Trichophyton rubrum CBS 118892] Length = 743 Score = 39.7 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 12/28 (42%), Positives = 18/28 (64%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS 94 V+L GP G GK+ LA +++SR+ S Sbjct: 519 VLLWGPPGCGKTLLAKAVANESRANFIS 546 Score = 36.3 bits (83), Expect = 4.2, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 21/38 (55%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P R V+L GP G GK+ +AN ++ + + A S+ Sbjct: 210 PPRGVLLHGPPGCGKTMIANAFAAELGVPFIAISAPSI 247 >gi|307266569|ref|ZP_07548101.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter wiegelii Rt8.B1] gi|306918423|gb|EFN48665.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter wiegelii Rt8.B1] Length = 338 Score = 39.7 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 67/201 (33%), Gaps = 43/201 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P V+L GP G GK+ LA + S++ +++ L++ D+L + Sbjct: 51 PLDHVLLYGPPGLGKTTLATVISNEMGVGIKITSGPAIEKSGDLAAILTNLQENDILFID 110 Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCL-------PDLCS-RLKAATVVKISLPD 174 + H +N + +L P L P S RL I Sbjct: 111 EI---HRLNRSVEE---ILY-----PAMEDFELDIVIGKGPSARSIRLSLPRFTLIGA-- 157 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRME-RSLVFAEKLVDK--------MDNLA-- 223 ++ DR I R++ S+ ++++ + +D A Sbjct: 158 -TTRAALMTSPLRDRFGVI---------NRLDYYSVEELKEIIKRSANILNIGIDEDAAF 207 Query: 224 -LSRGMGITRSLAAEVLKETQ 243 ++ T +A +LK + Sbjct: 208 EIAERSRGTPRIANRLLKRVR 228 >gi|302024550|ref|ZP_07249761.1| ABC transporter ATP-binding membrane protein [Streptococcus suis 05HAS68] Length = 483 Score = 39.7 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 73/193 (37%), Gaps = 29/193 (15%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123 + +++G SGSGKS LA I +++++ +D + ++D + Sbjct: 300 GKKYLILGESGSGKSSLALI---LTKNSQLQAGDIYVDKTSLSDLSYQAIQDKIAYLPQE 356 Query: 124 TQLFH---IINSIHQYDSSLLMTARTFPV---SWGVCLPDLCSRLKAATVVKISLPDDDF 177 LFH + N R P + + +L SR + + + DD Sbjct: 357 GSLFHDTVLYNLTM---------GREIPEDRLMFLIKTMNLDSRFPSYASLSEEISDDSG 407 Query: 178 LEKVI-VKMFADRQIFIDKKLAAYIVQRMERSLVFA-EKLVDKMDNL--ALSRGM--GIT 231 L ++ R + DK + ++ ++ SL ++ ++N +L+ I+ Sbjct: 408 LSGGQKQRLLLIRALLQDKDI---LL--LDESLSALDQETYAVIENYLTSLADKTLIHIS 462 Query: 232 RSLAAEVLKETQQ 244 ++ EVL Sbjct: 463 HRMSEEVLSRYDG 475 >gi|295099698|emb|CBK88787.1| ATPase involved in DNA replication initiation [Eubacterium cylindroides T2-87] Length = 123 Score = 39.7 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 9/66 (13%), Positives = 24/66 (36%), Gaps = 5/66 (7%) Query: 22 KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW--PSWPSRV--VILVGPSGSGK 77 + + QL + ++ + + ++A + +++ G SG GK Sbjct: 34 QQRTNQL-LKCTFNEEYTFENFVEGKSNQEAYAACLACCNQRGTHMFNPIMIYGNSGLGK 92 Query: 78 SCLANI 83 + L + Sbjct: 93 THLLHA 98 >gi|219118332|ref|XP_002179943.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217408996|gb|EEC48929.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 1015 Score = 39.7 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 23/55 (41%) Query: 57 DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV 111 D P RV++L GP G GK+ LA+I + + S T + V Sbjct: 373 DRRPEESCRVILLSGPPGVGKTTLAHIVARHAGYRPLEVNGSDERSASALTERIV 427 >gi|195619970|gb|ACG31815.1| vacuolar sorting protein 4b [Zea mays] Length = 435 Score = 39.7 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 15/32 (46%), Positives = 20/32 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P R +L GP G+GKS LA + ++ ST FS Sbjct: 164 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFS 195 >gi|254453017|ref|ZP_05066454.1| conserved hypothetical protein [Octadecabacter antarcticus 238] gi|198267423|gb|EDY91693.1| conserved hypothetical protein [Octadecabacter antarcticus 238] Length = 586 Score = 39.7 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 34/91 (37%), Gaps = 10/91 (10%) Query: 52 AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS----DKSRSTRFSNIAKSLDSILIDT 107 A ++ +P+W + + G GSGKS L + + + S + + Sbjct: 209 AAAILGGFPAW-RSHLYVYGSRGSGKSKLMEVAAGMLGEFGGSVLNDATEAGIRQSRNNQ 267 Query: 108 RKPVLLEDID-----LLDFNDTQLFHIINSI 133 +P+L+++ + +F + + Sbjct: 268 ARPILIDEFEPDQSVRNGSKQDGMFALFRRM 298 >gi|172038492|ref|YP_001804993.1| cell division protein [Cyanothece sp. ATCC 51142] gi|171699946|gb|ACB52927.1| cell division protein [Cyanothece sp. ATCC 51142] Length = 617 Score = 39.7 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 66/201 (32%), Gaps = 46/201 (22%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ FS + + Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFEQAKTNAPCI 257 Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 V +++ID + ND QL ++ +++ A P L Sbjct: 258 VFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLTEMDGFEGNTGIIIIAATNRPDVLDAAL 317 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211 L+ V + PD ++++ R + K + I +R Sbjct: 318 ------LRPGRFDRQVVVDRPDYAGRQEILKVHA--RGKTLSKDVDLDKIARRTP-GFTG 368 Query: 212 AEKLVDKMDNLA-LSRGMGIT 231 A L + ++ A L+ +T Sbjct: 369 A-DLSNLLNEAAILAARRNLT 388 >gi|126652744|ref|ZP_01724896.1| hypothetical protein BB14905_21413 [Bacillus sp. B14905] gi|126590433|gb|EAZ84552.1| hypothetical protein BB14905_21413 [Bacillus sp. B14905] Length = 259 Score = 39.7 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 21/141 (14%), Positives = 50/141 (35%), Gaps = 28/141 (19%) Query: 40 RDDLLVHSAIEQAVRLI----DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN 95 D+ L+ E+A + +++ + + ++L G G+GK+ LA + + Sbjct: 76 FDNFLMRQGAEKAFKAAKYYAENFAEFGAESLLLWGDVGNGKTHLAASVHNHLVAQGKVV 135 Query: 96 IAKSLDSILIDTRK---------------------PVLLEDIDLLDFND---TQLFHIIN 131 + S+ +L R ++++D+ +D +F I + Sbjct: 136 VFISMPELLGKIRATFNKNNNESEQQIMKALMICDLLIIDDLGAEKISDWVLETMFQIFD 195 Query: 132 SIHQYDSSLLMTARTFPVSWG 152 + +L T+ P Sbjct: 196 GRSRRKKPILATSNLNPKDLP 216 >gi|24660075|ref|NP_523959.2| smallminded, isoform A [Drosophila melanogaster] gi|7295244|gb|AAF50566.1| smallminded, isoform A [Drosophila melanogaster] Length = 944 Score = 39.7 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 12/25 (48%), Positives = 16/25 (64%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDK 87 PSR ++L GP G GK+ LA S + Sbjct: 283 PSRGLLLHGPPGCGKTFLARAISGQ 307 Score = 39.4 bits (91), Expect = 0.44, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 PS V+ L GP G GK+ LA ++++ S L ++ + + + Sbjct: 696 PSGVL-LCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESERAV 744 >gi|17541226|ref|NP_501861.1| Mitochondrial Sorting of Proteins (yeast MSP) in Nematode family member (mspn-1) [Caenorhabditis elegans] gi|14530491|emb|CAC42312.1| C. elegans protein K04D7.2b, confirmed by transcript evidence [Caenorhabditis elegans] Length = 339 Score = 39.7 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 16/32 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P R ++L GP G GK+ LA + + + Sbjct: 113 PPRGILLYGPPGCGKTLLAKAVARAAGCRFIN 144 >gi|46136671|ref|XP_390027.1| hypothetical protein FG09851.1 [Gibberella zeae PH-1] Length = 795 Score = 39.7 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 31/50 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S+ST FS A SL S + + ++ Sbjct: 539 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTSKYLGESEKLV 588 >gi|325568303|ref|ZP_08144670.1| replication-associated recombination protein A [Enterococcus casseliflavus ATCC 12755] gi|325158072|gb|EGC70225.1| replication-associated recombination protein A [Enterococcus casseliflavus ATCC 12755] Length = 425 Score = 39.7 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 68/172 (39%), Gaps = 24/172 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117 +IL GP G+GK+ +A+ + +R + R N A + + +LL+++ Sbjct: 42 MILYGPPGTGKTSIASAIAGSTRYAFRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEVH 101 Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 LD D L H+ + +++ A T + P + SR + ++ + Sbjct: 102 RLDKTKQDFLLPHL-----ESGKIIMIGATTENPYITIN-PAIRSR---TQIFEVKPLQE 152 Query: 176 DFLEKVIVKMFAD--RQIFIDKKLAAYIVQ-RMERSLV-FAEKLVDKMDNLA 223 + + I + AD R + + + + + R+ ++ ++ A Sbjct: 153 EDILTAIDQALADETRGLGSETIVVTDDARLHLSRATNGDLRSALNGLELAA 204 >gi|320582077|gb|EFW96295.1| Putative ATPase of the AAA family [Pichia angusta DL-1] Length = 715 Score = 39.7 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 11/67 (16%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P+R ++L GP G+GK+ LA + +S+ST FS A SL S + + ++ Sbjct: 465 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTSKYLGESEKLV---------- 514 Query: 123 DTQLFHI 129 LF + Sbjct: 515 -RALFQL 520 >gi|319940238|ref|ZP_08014590.1| ATPase [Streptococcus anginosus 1_2_62CV] gi|319810540|gb|EFW06876.1| ATPase [Streptococcus anginosus 1_2_62CV] Length = 423 Score = 39.7 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 26/176 (14%), Positives = 57/176 (32%), Gaps = 25/176 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST---------RFSNIAKSLDSILIDTRKPVLLEDID 117 +IL GP G GK+ +A+ + ++ + + + +LL++I Sbjct: 42 MILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIH 101 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 L+ + ++M T + P + SR + ++ +D Sbjct: 102 RLEKTKQDFL----LPLLENGLVIMIGATTENPFFSVTPAIRSR---VQIFELEPLTNDD 154 Query: 178 LEKVIVKMFAD--RQ----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 +++ I D R + +D +I + +D LS Sbjct: 155 IKQAIQTALTDTERGFDFPVQLDDDALDFITTSTN---GDLRSAFNSLDLAVLSTK 207 >gi|315605193|ref|ZP_07880240.1| cell division protein FtsH [Actinomyces sp. oral taxon 180 str. F0310] gi|315313114|gb|EFU61184.1| cell division protein FtsH [Actinomyces sp. oral taxon 180 str. F0310] Length = 683 Score = 39.7 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 26/62 (41%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 R V+L GP G+GK+ LA + ++ + FS + + + E + N Sbjct: 210 RGVLLYGPPGTGKTLLAKAVAGEANAPFFSISGSEFMELYVGVGASRVRELFERAKKNAP 269 Query: 125 QL 126 + Sbjct: 270 AI 271 >gi|300123320|emb|CBK24593.2| unnamed protein product [Blastocystis hominis] Length = 347 Score = 39.7 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 35/176 (19%), Positives = 60/176 (34%), Gaps = 43/176 (24%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS----------------ILIDTR 108 R ++L GP G+GK+ L + T FS A SL S + Sbjct: 102 RGLLLFGPPGTGKTLLGKAIAHGGGCTFFSISASSLTSKWMGEGEKMVRALFGVAEMKAP 161 Query: 109 KPVLLEDIDLLDF--NDTQL---------FHIINSIHQYDSS-------LLMTARTFPVS 150 + +++ID L + L F + S L++ A P Sbjct: 162 SVIFIDEIDSLLGMRREDDLEGTRRLKTEF----LVQLDGVSSAEKASILVIGATNRPQD 217 Query: 151 WGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206 D +R + + I LPD++ + + + + ID +V+R E Sbjct: 218 L-----DEAARRRFVKRLYIPLPDEETRKALFGILLKKNENQIDDAQIDVLVERSE 268 >gi|260654418|ref|ZP_05859908.1| replication-associated recombination protein A [Jonquetella anthropi E3_33 E1] gi|260631051|gb|EEX49245.1| replication-associated recombination protein A [Jonquetella anthropi E3_33 E1] Length = 426 Score = 39.7 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 35/205 (17%), Positives = 65/205 (31%), Gaps = 32/205 (15%) Query: 68 ILVGPSGSGKSCLANIWSDKSRSTR-----FSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 IL GP G GK+ L + + S L ++ L + F Sbjct: 46 ILYGPPGVGKTALVRLMGRVTGRELLEINAVSAKVSELRDLVDRAADLRRLSGRSAIAFV 105 Query: 123 DTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 D L+H N + +L+ T + + L SRL V +I + Sbjct: 106 DE-LYH-FNRSQQDALLPSVERGEVILVGTTTENPRFEIN-KTLLSRL---LVFEIGPLE 159 Query: 175 DDFLEKVIVKMFADR-------QIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 + L +++ DR ++ + I A ++ + G Sbjct: 160 KEDLVEILKSALTDRERGLGELELSASDDVIEAIAASAGGDGRQALTRLEFLSRAIAVSG 219 Query: 228 MG------ITRSLAAEVLKETQQCD 246 +T+SL A ++ ++ D Sbjct: 220 RRTIEEDDLTKSLPAAFVRHDRRQD 244 >gi|241646770|ref|XP_002411121.1| transitional endoplasmic reticulum ATPase, putative [Ixodes scapularis] gi|215503751|gb|EEC13245.1| transitional endoplasmic reticulum ATPase, putative [Ixodes scapularis] Length = 573 Score = 39.7 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 11/31 (35%), Positives = 18/31 (58%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF 93 P R +L GP G+GK+ LA + +S ++ Sbjct: 57 PPRGALLFGPPGTGKTLLARAVAAESGASLV 87 >gi|198464466|ref|XP_001353233.2| GA21172 [Drosophila pseudoobscura pseudoobscura] gi|198149730|gb|EAL30736.2| GA21172 [Drosophila pseudoobscura pseudoobscura] Length = 933 Score = 39.7 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 12/25 (48%), Positives = 16/25 (64%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDK 87 PSR ++L GP G GK+ LA S + Sbjct: 284 PSRGLLLHGPPGCGKTFLARAISGQ 308 Score = 39.4 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 PS V+ L GP G GK+ LA ++++ S L ++ + + + Sbjct: 685 PSGVL-LCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESERAV 733 >gi|195384371|ref|XP_002050891.1| GJ19952 [Drosophila virilis] gi|194145688|gb|EDW62084.1| GJ19952 [Drosophila virilis] Length = 749 Score = 39.7 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 21/43 (48%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109 V+LVGP G+GK+ LA + ++ F D +L+ Sbjct: 350 VLLVGPPGTGKTLLARAVAGEASVPFFHAAGPEFDEVLVGQGA 392 >gi|146420643|ref|XP_001486276.1| hypothetical protein PGUG_01947 [Meyerozyma guilliermondii ATCC 6260] Length = 768 Score = 39.7 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 58/153 (37%), Gaps = 32/153 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTR-- 108 P R V+L GP G+GK+ L +++ + + +L I ++ R Sbjct: 269 PPRGVLLHGPPGTGKTMLLRSVANEVDAHVLAVNGPSIVSKYLGETENALREIFLEARQY 328 Query: 109 --KPVLLEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 + +++ID L N L +++ + + +++ A P S Sbjct: 329 QPSIIFMDEIDSLAPNRNSDDSGETESRVVATLLTMMDGMGESGRVVVIGATNRPNSLD- 387 Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 P L + V+I +PD + ++ K F Sbjct: 388 --PALRRPGRFDQEVEIGIPDVNARLDILSKQF 418 >gi|281365776|ref|NP_001163371.1| smallminded, isoform C [Drosophila melanogaster] gi|1770214|emb|CAA67594.1| smallminded [Drosophila melanogaster] gi|272455082|gb|ACZ94642.1| smallminded, isoform C [Drosophila melanogaster] Length = 943 Score = 39.7 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 12/25 (48%), Positives = 16/25 (64%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDK 87 PSR ++L GP G GK+ LA S + Sbjct: 282 PSRGLLLHGPPGCGKTFLARAISGQ 306 Score = 39.4 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 PS V+ L GP G GK+ LA ++++ S L ++ + + + Sbjct: 695 PSGVL-LCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESERAV 743 >gi|73669571|ref|YP_305586.1| replication factor C large subunit [Methanosarcina barkeri str. Fusaro] gi|110287808|sp|Q46AT6|RFCL_METBF RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|72396733|gb|AAZ71006.1| replication factor C large subunit [Methanosarcina barkeri str. Fusaro] Length = 642 Score = 39.7 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 41/95 (43%), Gaps = 21/95 (22%) Query: 48 AIEQAVRLIDSWPS-WPS-----RVVILVGPSGSGKSCLANIWS-------------DKS 88 ++AV+ + +W W S R V+L GP+G GK+ A+ + D+ Sbjct: 21 GNKKAVQYLRTWAEKWLSGIPDRRAVVLHGPAGVGKTSTAHALARDLDWEVIELNASDQR 80 Query: 89 RSTRFSNIAKSLDSI--LIDTRKPVLLEDIDLLDF 121 + +A S S+ ++ ++L++ D + Sbjct: 81 TAGVIERVAGSAASMNTFFGGKRLIILDEADNIHG 115 >gi|310794958|gb|EFQ30419.1| ATPase [Glomerella graminicola M1.001] Length = 437 Score = 39.7 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 16/83 (19%) Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 +W + ++L GP G+GKS LA + ++ ST FS + L S + + ++ Sbjct: 166 QAW--KGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESERLV------- 216 Query: 120 DFNDTQLFHIINSIHQYDSSLLM 142 LF + S+L Sbjct: 217 ----KALFS---MARENKPSVLF 232 >gi|300721990|ref|YP_003711270.1| ATPase [Xenorhabdus nematophila ATCC 19061] gi|297628487|emb|CBJ89054.1| ATPase, chaperone subunit of serine protease [Xenorhabdus nematophila ATCC 19061] Length = 423 Score = 39.7 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 20/132 (15%), Positives = 49/132 (37%), Gaps = 30/132 (22%) Query: 2 NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55 ++++E+ VP ++++ P P + DD ++ Sbjct: 46 DIIREEIKELVPHRERSALPT----------PHEIRQHLDDYVIGQEQAKKVLAVAVYNH 95 Query: 56 IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107 + + ++L+GP+GSGK+ LA + R+ ++ ++ T Sbjct: 96 YKRLRNGDTNNGVELGKSNILLIGPTGSGKTLLAETLA------RYLDVPFTMADATTLT 149 Query: 108 RKPVLLEDIDLL 119 + ED++ + Sbjct: 150 EAGYVGEDVENI 161 >gi|269792161|ref|YP_003317065.1| AAA ATPase central domain-containing protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099796|gb|ACZ18783.1| AAA ATPase central domain protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 421 Score = 39.7 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 51/138 (36%), Gaps = 19/138 (13%) Query: 68 ILVGPSGSGKSCLANIWSDKSRSTR--FSNIAKSLDSILIDTRKPVLLEDI---DLLDFN 122 IL GP G GK+ L + + + + + L + + L + + F Sbjct: 49 ILYGPPGVGKTTLVRLMATTTGRELLEINAVTSKLSDLRALADRAASLTSMGFEPPIAFV 108 Query: 123 DTQLFHIINSIHQY-------DSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 D ++H NS Q +++ T W L SR+ V ++ +D Sbjct: 109 DE-IYH-FNSQQQNVLLPFVESGQMVLVGTTTENPWFEVNKTLLSRM---LVYELKPLED 163 Query: 176 DFLEKVIVKMFA--DRQI 191 + +V+V+ DR + Sbjct: 164 RHVIQVLVRALEDFDRGL 181 >gi|225423767|ref|XP_002277238.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|297737931|emb|CBI27132.3| unnamed protein product [Vitis vinifera] Length = 1032 Score = 39.7 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 22/40 (55%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P + ++L GP G+GK+ LA + ++ + S +L S Sbjct: 775 PCKGILLFGPPGTGKTLLAKALATEAGANFISVTGSNLTS 814 >gi|206588441|emb|CAQ35404.1| probable transposition helper protein [Ralstonia solanacearum MolK2] Length = 453 Score = 39.7 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 47/130 (36%), Gaps = 30/130 (23%) Query: 51 QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110 ++ I+ + V+L+GPSG GK+ +A+ + ++ + +++ Sbjct: 284 ASLAFIERAEN-----VVLLGPSGVGKTHIASALAYRATQAGIKTRFITAADLMMQLATA 338 Query: 111 -------------------VLLEDIDLLDF--NDTQLFHIINSI--HQYDSSLLMTARTF 147 +++++I L F + LF N + ++++T+ Sbjct: 339 RQQNRLREFFNRAVIGPRLLVIDEIGYLPFGREEADLF--FNVVAKRYERGAIVLTSNLP 396 Query: 148 PVSWGVCLPD 157 W D Sbjct: 397 FTQWATAFAD 406 >gi|195978892|ref|YP_002124136.1| recombination factor protein RarA [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975597|gb|ACG63123.1| ATPase AAA family recombination factor RarA [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 423 Score = 39.7 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 63/166 (37%), Gaps = 22/166 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKS-------RSTR--FSNIAKSLDSILIDTRKPVLLEDID 117 +IL GP G GK+ +A+ + + +T + + + +LL++I Sbjct: 42 MILYGPPGIGKTSIASAIAGTTKYAFRTFNATIDNKKRLQEIAEEAKFSGGLVLLLDEIH 101 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 LD + + ++ +++ A T + V P + SR + ++ + Sbjct: 102 RLDKSKQDFLLP---LLEHGHIIMIGATTENPFFSVT-PAIRSR---VQIFELEPLSPEE 154 Query: 178 LEKVIVKMFAD--RQ----IFIDKKLAAYIVQRMERSLVFAEKLVD 217 +++ + D R + +D+ +I L A + +D Sbjct: 155 IKQALKLAITDKERGFAFDVTLDEAAFDFIATATNGDLRAAYQSLD 200 >gi|195391800|ref|XP_002054548.1| GJ24517 [Drosophila virilis] gi|194152634|gb|EDW68068.1| GJ24517 [Drosophila virilis] Length = 384 Score = 39.7 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 23/52 (44%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P R V+L GP G GK+ LA ++++ + + + ++ + Sbjct: 164 PPRGVLLYGPPGCGKTMLAKAVANQTTAAFIRVVGSEFVQKYLGEGPRMVRD 215 >gi|170025916|ref|YP_001722421.1| ribose 1,5-bisphosphokinase [Yersinia pseudotuberculosis YPIII] gi|169752450|gb|ACA69968.1| phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN [Yersinia pseudotuberculosis YPIII] Length = 193 Score = 39.7 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 29/73 (39%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123 +R++ L+GPSG+GK CL + + + V L + + + Sbjct: 2 ARLIYLMGPSGAGKDCLLSALRNATPQNMVVAHRYITRPADAGAENHVALSKQEFIQRAE 61 Query: 124 TQLFHIINSIHQY 136 LF + HQ+ Sbjct: 62 QGLFALHWQAHQH 74 >gi|156543233|ref|XP_001606546.1| PREDICTED: similar to ENSANGP00000022333 [Nasonia vitripennis] Length = 705 Score = 39.7 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 20/43 (46%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109 V+LVGP G+GK+ LA + ++ F D I + Sbjct: 327 VLLVGPPGTGKTLLARAVAGEAGVPFFYAAGPEFDEIFVGQGA 369 >gi|150016919|ref|YP_001309173.1| ABC transporter [Clostridium beijerinckii NCIMB 8052] gi|149903384|gb|ABR34217.1| ABC transporter related [Clostridium beijerinckii NCIMB 8052] Length = 236 Score = 39.7 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 16/61 (26%) Query: 66 VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125 V ++GPSGSGKS L ++ L + T VL+++ D+ + ++TQ Sbjct: 44 FVAIIGPSGSGKSTLLHM----------------LGGVDRPTSGKVLVDNTDIYNLDETQ 87 Query: 126 L 126 L Sbjct: 88 L 88 >gi|145492132|ref|XP_001432064.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124399173|emb|CAK64667.1| unnamed protein product [Paramecium tetraurelia] Length = 443 Score = 39.7 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 6/60 (10%) Query: 47 SAIEQAVRLIDSWPSW------PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 SA+++AV L +P + P + +++ GP G+GK+ LA + ++ T FS + L Sbjct: 153 SALQEAVLLPIRFPDFFEGARTPWKGILMYGPPGTGKTYLAKACATEAEGTFFSVSSADL 212 >gi|114653055|ref|XP_509951.2| PREDICTED: similar to Psmc6 protein isoform 3 [Pan troglodytes] Length = 353 Score = 39.7 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + ++ S+ I ++ E Sbjct: 180 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 231 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 232 ------MFNYARDHQ 240 >gi|116624471|ref|YP_826627.1| recombination factor protein RarA [Candidatus Solibacter usitatus Ellin6076] gi|116227633|gb|ABJ86342.1| Recombination protein MgsA [Candidatus Solibacter usitatus Ellin6076] Length = 434 Score = 39.7 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 52/155 (33%), Gaps = 35/155 (22%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD--FNDT 124 +IL GP G GK+ LA++ + ++ A I ++ D + L T Sbjct: 55 IILWGPPGVGKTTLAHLIAKVTKCEFIPFSAVLSGMKEIKA----VMVDAEKLRRLGRRT 110 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDL-CSRL--------- 162 LF H N + +L+ A T S+ V L SR+ Sbjct: 111 ILFVDEIHRFNKAQQDAFLPYVERGDIILIGATTENPSFEVIAALLSRSRVYALRAFTVP 170 Query: 163 -------KAATVVKISLPDDDFLEKVIVKMFADRQ 190 +A V+ + DD + I RQ Sbjct: 171 EIVTMLKRALPVLHLQASDDLLEQIGIYSNGDGRQ 205 >gi|67538894|ref|XP_663221.1| hypothetical protein AN5617.2 [Aspergillus nidulans FGSC A4] gi|40743520|gb|EAA62710.1| hypothetical protein AN5617.2 [Aspergillus nidulans FGSC A4] gi|259484914|tpe|CBF81541.1| TPA: DNA replication ATPase (Eurofung) [Aspergillus nidulans FGSC A4] Length = 528 Score = 39.7 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 31/198 (15%), Positives = 67/198 (33%), Gaps = 30/198 (15%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFS-------------NIAKSLDSILIDTRKPV 111 +IL G G+GK+ +A + + S A + + + RK + Sbjct: 151 PSMILWGGPGTGKTTIARVIASMVGSRFVEINSTSTGVAECKKIFADAKSELGLTGRKTI 210 Query: 112 LL-EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 + ++I + +F + L+ A T S+ V L SR + Sbjct: 211 IFCDEIHRFSKSQQDVFL---GPVESGQVTLIGATTENPSFKVQNA-LLSR---CRTFTL 263 Query: 171 SLPDDDFLEKVIVKMFADRQ------IFIDKKLAAYIVQRME---RSLVFAEKLVDKMDN 221 S D+ + ++ + +D +L Y+ + + R+ + +L + Sbjct: 264 SKLTDEDIRSILNRALKTEGPNYSPSALVDDELLDYLAKFADGDARTSLNLLELGMNLSK 323 Query: 222 LALSRGMGITRSLAAEVL 239 I R+L ++ Sbjct: 324 RPGISKDEIKRALTKTLV 341 >gi|329113826|ref|ZP_08242597.1| Cell division protease FtsH-like protein [Acetobacter pomorum DM001] gi|326696836|gb|EGE48506.1| Cell division protease FtsH-like protein [Acetobacter pomorum DM001] Length = 645 Score = 39.7 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 66/198 (33%), Gaps = 47/198 (23%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ F+ + + Sbjct: 192 VLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEMFVGVGASRVRDMFEQGKKSAPCI 251 Query: 111 VLLEDIDLLDF----------NDTQLFHIINSIH-------QYDSSLLMTARTFPVSWGV 153 + +++ID + ++ + +N + + +L+ A P Sbjct: 252 IFIDEIDAVGRHRGAGMGGGNDERE--QTLNQMLVEMDGFESNEGVILIAATNRPDVLDP 309 Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L+ V + PD EK++ R++ + + I+ R Sbjct: 310 AL------LRPGRFDRQVVVPNPDVSGREKILRVHM--RKVPLASDVDPRIIARGTPGFS 361 Query: 211 FAEKLVDKMDNLALSRGM 228 A L + ++ ALS Sbjct: 362 GA-DLANLVNEAALSAAR 378 >gi|323465366|gb|ADX77519.1| cell division protein FtsH, putative [Staphylococcus pseudintermedius ED99] Length = 704 Score = 39.7 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 28/198 (14%), Positives = 64/198 (32%), Gaps = 47/198 (23%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ FS + + Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260 Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + + L + ++ + + +++ A P L Sbjct: 261 IFIDEIDAVGRQRGAGVGGGHDEREQTLNQLLVEMDGFGENEGIIMIAATNRPDILDPAL 320 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY--IVQRMERSLV 210 L+ +++ PD E ++ ++ + + I QR Sbjct: 321 ------LRPGRFDRQIQVGRPDVTGREAILHVHAKNKPL---DETVDLKAIAQRTP-GFS 370 Query: 211 FAEKLVDKMDNLALSRGM 228 A L + ++ +L Sbjct: 371 GA-DLENLLNEASLIAAR 387 >gi|323137680|ref|ZP_08072756.1| AAA ATPase central domain protein [Methylocystis sp. ATCC 49242] gi|322396977|gb|EFX99502.1| AAA ATPase central domain protein [Methylocystis sp. ATCC 49242] Length = 388 Score = 39.7 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 3/57 (5%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS---TRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120 V+L GP G+GK+ L + + S + ++EDID + Sbjct: 207 VVLHGPPGTGKTSLIHALASDFGFDIKYIKSLHGLGAAFKSGTSNDLFVIEDIDTIA 263 >gi|319891464|ref|YP_004148339.1| Cell division protein FtsH [Staphylococcus pseudintermedius HKU10-03] gi|317161160|gb|ADV04703.1| Cell division protein FtsH [Staphylococcus pseudintermedius HKU10-03] Length = 704 Score = 39.7 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 28/198 (14%), Positives = 64/198 (32%), Gaps = 47/198 (23%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ FS + + Sbjct: 201 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 260 Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + + L + ++ + + +++ A P L Sbjct: 261 IFIDEIDAVGRQRGAGVGGGHDEREQTLNQLLVEMDGFGENEGIIMIAATNRPDILDPAL 320 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY--IVQRMERSLV 210 L+ +++ PD E ++ ++ + + I QR Sbjct: 321 ------LRPGRFDRQIQVGRPDVTGREAILHVHAKNKPL---DETVDLKAIAQRTP-GFS 370 Query: 211 FAEKLVDKMDNLALSRGM 228 A L + ++ +L Sbjct: 371 GA-DLENLLNEASLIAAR 387 >gi|315039481|ref|XP_003169116.1| ribosome biogenesis ATPase RIX7 [Arthroderma gypseum CBS 118893] gi|311337537|gb|EFQ96739.1| ribosome biogenesis ATPase RIX7 [Arthroderma gypseum CBS 118893] Length = 743 Score = 39.7 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 12/28 (42%), Positives = 18/28 (64%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS 94 V+L GP G GK+ LA +++SR+ S Sbjct: 519 VLLWGPPGCGKTLLAKAVANESRANFIS 546 Score = 36.3 bits (83), Expect = 3.8, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 27/57 (47%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P R V+L GP G GK+ +AN ++ + + A S+ S + + L + + Sbjct: 210 PPRGVLLHGPPGCGKTMIANAFAAELGVPFIAISAPSIISGMSGESEKALRDHFEEA 266 >gi|291166195|gb|EFE28241.1| replicative DNA helicase [Filifactor alocis ATCC 35896] Length = 284 Score = 39.7 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 25/120 (20%) Query: 67 VILVGPSGSGKSCLANIWS----DKSRSTRFSNIAKSLDSIL------------IDTRKP 110 +IL G G+GK+ LA+ + +K S R +N L+ ++ +++ + Sbjct: 132 LILTGAVGTGKTYLASSIANALIEKGISVRMTNFGVILNDMMNLQIDKNMYIKNLNSNRL 191 Query: 111 VLLEDIDLLDFNDTQLFHIINSI---HQYDSSLLMTARTFPVSWGVCLPDLC-----SRL 162 ++++D + L HI N I ++ + +++T + DL SRL Sbjct: 192 LIIDDFGIQRDTSFALEHIFNIIDSRYRANKPIIVTTNLSISHL-MNTTDLKEKRIYSRL 250 >gi|282165485|ref|YP_003357870.1| cell division control protein 48 [Methanocella paludicola SANAE] gi|282157799|dbj|BAI62887.1| cell division control protein 48 [Methanocella paludicola SANAE] Length = 765 Score = 39.7 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 57/166 (34%), Gaps = 39/166 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P + V+L GP G+GK+ +A + ++ + S + + Sbjct: 214 PPKGVLLYGPPGTGKTMIAKAVASETDANFISISGPEIMSKYYGESEKQLRDIFKEAEDN 273 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + +++ A P + Sbjct: 274 APSIIFIDEIDSIAPRREEVTGEVERRVVAQLLALMDGLQARGQVIVVAATNRPNA---V 330 Query: 155 LPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L + ++I +PD + +++ R + + + Sbjct: 331 DPALR---RGGRFDREIEIGVPDKNGRLEIL--HVHTRGMPLASDV 371 >gi|254499263|ref|ZP_05111939.1| cell division control protein 48 ATPase of AAA family CDC48 subfamily [Legionella drancourtii LLAP12] gi|254351507|gb|EET10366.1| cell division control protein 48 ATPase of AAA family CDC48 subfamily [Legionella drancourtii LLAP12] Length = 708 Score = 39.7 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 45/117 (38%), Gaps = 28/117 (23%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILIDTRKP 110 V+L GP GSGK+ +A + ++ ++ FS N+ K + Sbjct: 216 VLLYGPPGSGKTLIAKAIAHETDASFFSISGPEIVHKFYGESEANLRKIFEQAAQKAPSI 275 Query: 111 VLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 + L++ID + + QL +++ ++ +++ A P S L Sbjct: 276 IFLDEIDAIAPKRDQVVGEVEKRIVAQLLALMDGLNTRQKVIVIGATNLPNSIDSAL 332 >gi|254475304|ref|ZP_05088690.1| type I secretion system ATPase [Ruegeria sp. R11] gi|214029547|gb|EEB70382.1| type I secretion system ATPase [Ruegeria sp. R11] Length = 577 Score = 39.7 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL 113 P + + ++GPSGSGKS LA + + R + LD ID P +L Sbjct: 359 PGQAIGVIGPSGSGKSTLAR---ALTGAWRPAAGTVRLDGASIDQYAPEVL 406 >gi|212638579|ref|YP_002315099.1| recombination factor protein RarA [Anoxybacillus flavithermus WK1] gi|212560059|gb|ACJ33114.1| ATPase [Anoxybacillus flavithermus WK1] Length = 426 Score = 39.7 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 57/168 (33%), Gaps = 28/168 (16%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD-------- 86 I +DD V + R+I + ++L GP G GK+ LA + Sbjct: 18 DEVIGQDD--VIGSHTALYRMIK---NGYVPSLLLYGPPGVGKTSLAYAIAGTVQRPFYM 72 Query: 87 -KSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL--DFNDTQLFHIINSIHQYDSSLLM- 142 + + + + + + + +++I D L H+ + L+ Sbjct: 73 LNATTAGKKEMEEIVADARFEGNVILFIDEIHRFTKAQQDYLLPHV-----ESGLITLIG 127 Query: 143 -TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 T S P + SRL + ++ + ++ + ADR Sbjct: 128 ATTENPFHSIN---PAVRSRL--GQIKQLQPLTKEKTLALLHRALADR 170 >gi|195162967|ref|XP_002022325.1| GL26363 [Drosophila persimilis] gi|194104286|gb|EDW26329.1| GL26363 [Drosophila persimilis] Length = 909 Score = 39.7 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 12/25 (48%), Positives = 16/25 (64%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDK 87 PSR ++L GP G GK+ LA S + Sbjct: 265 PSRGLLLHGPPGCGKTFLARAISGQ 289 Score = 39.4 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 PS V+ L GP G GK+ LA ++++ S L ++ + + + Sbjct: 661 PSGVL-LCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESERAV 709 >gi|167388769|ref|XP_001738689.1| 26S protease regulatory subunit 6A [Entamoeba dispar SAW760] gi|165897953|gb|EDR24975.1| 26S protease regulatory subunit 6A, putative [Entamoeba dispar SAW760] Length = 422 Score = 39.7 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 25/48 (52%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 V+L GP G+GK+ +A + +++ST A L S I ++ + Sbjct: 206 VLLYGPPGTGKTLMARACAAQTKSTFLKLAASQLVSSSIGDGSRIIRD 253 >gi|170113226|ref|XP_001887813.1| predicted protein [Laccaria bicolor S238N-H82] gi|164637174|gb|EDR01461.1| predicted protein [Laccaria bicolor S238N-H82] Length = 382 Score = 39.7 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 4/59 (6%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123 + +I+ GPS +GK+ W+ + N + + ++L+DID F Sbjct: 259 KALIIWGPSRTGKT----EWARSLGPHSYHNFQMNGSEFDENKASYIVLDDIDPASFPQ 313 >gi|57642154|ref|YP_184632.1| replication factor C large subunit [Thermococcus kodakarensis KOD1] gi|62287361|sp|Q5JHP1|RFCL_PYRKO RecName: Full=Replication factor C large subunit; Short=RFC large subunit; AltName: Full=Clamp loader large subunit gi|57160478|dbj|BAD86408.1| replication factor C, large subunit [Thermococcus kodakarensis KOD1] Length = 499 Score = 39.7 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 30/189 (15%), Positives = 61/189 (32%), Gaps = 39/189 (20%) Query: 48 AIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRFS---------- 94 A+EQ +++W ++L GP G GK+ +++ Sbjct: 24 ALEQVRAWVEAWLHGNPPKKKALLLAGPPGVGKTTTVYALANEYGFEVIELNASDERTYE 83 Query: 95 -----NIAKSLDSILIDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTAR- 145 A IL RK + L++ D + + I + + ++M+A Sbjct: 84 KIERYVQAAYTMDILGKRRKLIFLDEADNIEPSGAREIA-----KLIDKARNPIIMSANH 138 Query: 146 --TFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203 P A +V+ + K +V++ + + K++ I + Sbjct: 139 YWEVPREIRNK----------AQIVEYKRLTQRDIIKALVRILKREGLEVPKEVLYEIAK 188 Query: 204 RMERSLVFA 212 R L A Sbjct: 189 RANGDLRAA 197 >gi|331702365|ref|YP_004399324.1| AAA ATPase central domain-containing protein [Lactobacillus buchneri NRRL B-30929] gi|329129708|gb|AEB74261.1| AAA ATPase central domain protein [Lactobacillus buchneri NRRL B-30929] Length = 441 Score = 39.7 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 50/134 (37%), Gaps = 22/134 (16%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 +I GP G GK+ LA I + K+++ FS + + I + + + Sbjct: 52 PSIIFWGPPGVGKTTLAEIIAKKTQAKFVTFSAVTSGIKEIREIMKDA----EANREMGG 107 Query: 123 DTQLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 T +F H N + S L+ A T S+ + L SR V + Sbjct: 108 KTIVFVDEIHRFNKAQQDAFLPFVERGSITLIGATTENPSFEINSA-LLSR---CKVFVL 163 Query: 171 SLPDDDFLEKVIVK 184 + D + ++I + Sbjct: 164 QPLETDDIVQLIHQ 177 >gi|331248548|ref|XP_003336897.1| hypothetical protein PGTG_18303 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309315887|gb|EFP92478.1| hypothetical protein PGTG_18303 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 544 Score = 39.7 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 45/123 (36%), Gaps = 31/123 (25%) Query: 63 PSRVVILVGPSGSGKSC-LANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 P V ++ GP G+GK+ L +I + + D I+I + +++I Sbjct: 32 PCPVTLVFGPPGTGKTHTLVSI---------IAALYARGDRIIIAAASNLAIDNIA---- 78 Query: 122 NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKV 181 +L + L +T P L L S + +++ D+ + + Sbjct: 79 --ERLLDL---------KLPITRLGHPAR---VLDSLSS---STLEYQLNTSDESEIIRD 121 Query: 182 IVK 184 + K Sbjct: 122 LKK 124 >gi|291528586|emb|CBK94172.1| ATP-dependent metalloprotease FtsH [Eubacterium rectale M104/1] Length = 702 Score = 39.7 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 43/141 (30%), Gaps = 45/141 (31%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 +LVGP G+GK+ LA + ++ FS + I Sbjct: 239 ALLVGPPGTGKTLLAKAVAGEAGVPFFSLAGSDFVEMFIGVGASRVRDLFKEAQKMAPCI 298 Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + ND QL ++ L++ A P L Sbjct: 299 IFIDEIDAIGKSRDSRYGGGNDEREQTLNQLLAEMDGFDTSKGLLILAATNRPEVLDKAL 358 Query: 156 --------------PDLCSRL 162 PDL RL Sbjct: 359 LRPGRFDRRIIVDKPDLKGRL 379 >gi|195134568|ref|XP_002011709.1| GI10939 [Drosophila mojavensis] gi|193906832|gb|EDW05699.1| GI10939 [Drosophila mojavensis] Length = 500 Score = 39.7 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 12/28 (42%), Positives = 17/28 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRS 90 P R ++L GP GSGK+ LA ++R Sbjct: 261 PWRSLLLHGPPGSGKTYLAKALYAETRG 288 >gi|189461514|ref|ZP_03010299.1| hypothetical protein BACCOP_02173 [Bacteroides coprocola DSM 17136] gi|189431783|gb|EDV00768.1| hypothetical protein BACCOP_02173 [Bacteroides coprocola DSM 17136] Length = 403 Score = 39.7 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 10/63 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTR----------FSNIAKSLDSILIDTRKPVLLEDI 116 +IL G G+GK+ LA ++ + +++ + L D + E Sbjct: 226 LILTGAPGTGKTHLAKAIAEAMDAEYDFVQFHPSYDYTDFVEGLRPTPPDNNGNIGFERK 285 Query: 117 DLL 119 D + Sbjct: 286 DGV 288 >gi|37624801|gb|AAQ96168.1| putative transposase [Gordonia sp. CYKS2] Length = 267 Score = 39.7 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 50/152 (32%), Gaps = 47/152 (30%) Query: 30 FSFPRCLGISRD--------DLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 F F G+ RD D +V V+ +GP G+GK+ LA Sbjct: 86 FDFDHARGLKRDLIAHLGTLDFVVAKDN-----------------VVFLGPPGTGKTHLA 128 Query: 82 ---NIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------VLLEDIDLLDFND 123 I + ++ A ++L ++++++ + F Sbjct: 129 IGLAIRACQAGHRVLFATAADWVNVLAQAHHAGKLQAELVRLGRYPLLVIDEVGYIPFEP 188 Query: 124 TQ---LFHIINSIHQYDSSLLMTARTFPVSWG 152 F ++ S +SL++T+ WG Sbjct: 189 EAANLFFQLV-SSRYERASLIVTSNKQFGRWG 219 >gi|81294202|gb|AAI07951.1| Psmc6 protein [Rattus norvegicus] Length = 381 Score = 39.7 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + ++ S+ I ++ E Sbjct: 158 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 209 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 210 ------MFNYARDHQ 218 >gi|329114603|ref|ZP_08243362.1| Replication-associated recombination protein A [Acetobacter pomorum DM001] gi|326696083|gb|EGE47765.1| Replication-associated recombination protein A [Acetobacter pomorum DM001] Length = 453 Score = 39.7 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 46/144 (31%), Gaps = 26/144 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL G G GK+ +A + + + + S + + + T Sbjct: 76 LILWGGPGVGKTTIARLLAQAAGLKFVQLSAVFSGVADLKKAFENA----RRQAEAGGGT 131 Query: 125 QLF----HIINSIHQYD-------SSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N Q ++++ T + L SR V+ + Sbjct: 132 LLFVDEIHRFNRAQQDGFLPVVEDGTVVLVGATTENPSFALNSA---LLSR---CQVMVL 185 Query: 171 SLPDDDFLEKVIVKMFADRQIFID 194 + DD E ++V+ + + Sbjct: 186 NRLDDPACEALLVRAEEETGRPLP 209 >gi|321157133|emb|CBW39119.1| AAA+ ATPase [Streptococcus phage 23782] Length = 256 Score = 39.7 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 10/33 (30%), Positives = 17/33 (51%) Query: 49 IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 + A ++ W ++L G +G+GKS LA Sbjct: 103 LAFAKKICREWSEGVRNNIVLQGEAGTGKSHLA 135 >gi|295054734|gb|ADF59564.1| MIP20544p [Drosophila melanogaster] Length = 910 Score = 39.7 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 12/25 (48%), Positives = 16/25 (64%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDK 87 PSR ++L GP G GK+ LA S + Sbjct: 249 PSRGLLLHGPPGCGKTFLARAISGQ 273 Score = 39.4 bits (91), Expect = 0.46, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 PS V+ L GP G GK+ LA ++++ S L ++ + + + Sbjct: 662 PSGVL-LCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESERAV 710 >gi|260439221|ref|ZP_05793037.1| cell division protein FtsH [Butyrivibrio crossotus DSM 2876] gi|292808236|gb|EFF67441.1| cell division protein FtsH [Butyrivibrio crossotus DSM 2876] Length = 646 Score = 39.7 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 42/140 (30%), Gaps = 44/140 (31%) Query: 67 VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110 +LVGP G+GK+ LA + ++ S + + Sbjct: 232 ALLVGPPGTGKTLLAKAVAGEAGVPFFSLSGSDFVEMFVGVGASRVRDLFKQAIAAAPCI 291 Query: 111 VLLEDIDLL--------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL- 155 + +++ID + ND QL ++ L++ A P L Sbjct: 292 IFIDEIDAIGKSRDSQFGGNDEREQTLNQLLSEMDGFDSSKGVLILAATNRPEVLDKALL 351 Query: 156 -------------PDLCSRL 162 PDL RL Sbjct: 352 RPGRFDRRIIVDKPDLKGRL 371 >gi|261417160|ref|YP_003250843.1| ATP-dependent metalloprotease FtsH [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373616|gb|ACX76361.1| ATP-dependent metalloprotease FtsH [Fibrobacter succinogenes subsp. succinogenes S85] Length = 696 Score = 39.7 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 54/163 (33%), Gaps = 36/163 (22%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 +LVGP G+GK+ LA + ++ FS + + Sbjct: 226 ALLVGPPGTGKTLLARAVAGEAGVPFFSMSGSDFVEMFVGVGASRVRDLFETGKKNAPCI 285 Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + + L + ++ + +L+ A P L Sbjct: 286 LFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFTANEGVILIAATNRPDVLDKAL 345 Query: 156 PDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L R VV + PD E+++ R++ + + Sbjct: 346 --LRPGRFDRQIVVGL--PDLKGREEILKVHLKKRKVPLGDDV 384 >gi|261203737|ref|XP_002629082.1| vacuolar sorting protein 4b [Ajellomyces dermatitidis SLH14081] gi|239586867|gb|EEQ69510.1| vacuolar sorting protein 4b [Ajellomyces dermatitidis SLH14081] Length = 812 Score = 39.7 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 19/40 (47%), Positives = 26/40 (65%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P+R ++L GP G+GK+ LA + +S ST FS A SL S Sbjct: 583 PARGMLLFGPPGTGKTMLARAVATESHSTFFSVSASSLTS 622 >gi|238014828|gb|ACR38449.1| unknown [Zea mays] Length = 391 Score = 39.7 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 19/32 (59%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + V+L GP G+GK+ LA + +S + + Sbjct: 119 PQKGVLLYGPPGTGKTMLAKAIARESGAVFIN 150 >gi|227496429|ref|ZP_03926715.1| recombination factor protein RarA [Actinomyces urogenitalis DSM 15434] gi|226834048|gb|EEH66431.1| recombination factor protein RarA [Actinomyces urogenitalis DSM 15434] Length = 455 Score = 39.7 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 65/175 (37%), Gaps = 28/175 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSR------STRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120 +IL GP G GK+ +A + + + S FS +A+ L + + + LL Sbjct: 62 IILWGPPGCGKTTIARLLASGTGLVFEQVSATFSGVAE-LRKVFSAAAQRRQIGQRTLLF 120 Query: 121 FNDTQLFHIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKI 170 ++ H N + + +L+ T L SR V+ + Sbjct: 121 VDEI---HRFNRAQQDSFLPYVEDGTVVLVGATTENPSFELNGA---LLSR---CQVLVL 171 Query: 171 SLPDDDFLEKVIVK--MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 D ++I + + R++ + ++ +V + + +V+++ LA Sbjct: 172 HRLPDQAQAELIERAEKLSGRRLPLTQQARQALVAMADGDGRYLLGMVEQLLGLA 226 >gi|206601486|gb|EDZ37971.1| transposase [Leptospirillum sp. Group II '5-way CG'] Length = 242 Score = 39.7 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 57/148 (38%), Gaps = 22/148 (14%) Query: 32 FPRCLGISRDDLLVHSAIEQAV--RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR 89 FP + D V +++ + +I + SR +++ GP+G GK LA + Sbjct: 66 FPVSASLENLDFTVDRKLKRPLIRDMISASFVSQSRNILIAGPTGVGKIHLACALGQAAC 125 Query: 90 STRFSNIAKSLDSIL------------------IDTRKPVLLEDIDLLDFNDTQLFHIIN 131 F+ + SL+ +L + ++++D L QL I + Sbjct: 126 RQGFTTLFFSLNRLLEKIALTRAQGRYLSLLKKLTGVSCLIIDDFGLRALTPQQLQDIYD 185 Query: 132 SI--HQYDSSLLMTARTFPVSWGVCLPD 157 + + + ++T + +W LPD Sbjct: 186 LVDGRVENLTTIVTTQLPVENWSEILPD 213 >gi|156054484|ref|XP_001593168.1| hypothetical protein SS1G_06090 [Sclerotinia sclerotiorum 1980] gi|154703870|gb|EDO03609.1| hypothetical protein SS1G_06090 [Sclerotinia sclerotiorum 1980 UF-70] Length = 774 Score = 39.7 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 35/212 (16%), Positives = 68/212 (32%), Gaps = 56/212 (26%) Query: 3 LMKEDYSFFV---PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSW 59 +M E ++ V P K D E Q + D+ +++ V + + Sbjct: 265 MMIEGFNSVVARRPGGAKADNEAKAEHQ---NVRFTDVHGCDE--AKDELQELVDFLKNP 319 Query: 60 PSWPS------RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTR----- 108 + + + V+LVGP G+GK+ LA + ++ F D I + Sbjct: 320 EKFSTLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFFMSGSEFDEIYVGVGAKRVR 379 Query: 109 -----------KPVLLEDIDLLDFNDTQ------------LFHIINSIHQYDSSLLMTAR 145 + ++++D + L ++ Q + +++ A Sbjct: 380 ELFTAAKSKSPAIIFIDELDAIGGKRNARDAAYSKQTLNQLLTELDGFAQNNGVIILAAT 439 Query: 146 TFPVSWG--------------VCLPDLCSRLK 163 FP V LPD+ RL Sbjct: 440 NFPELLDKALTRPGRFDRNVVVGLPDVRGRLA 471 >gi|148239552|ref|YP_001224939.1| cell division protein FtsH [Synechococcus sp. WH 7803] gi|147848091|emb|CAK23642.1| Cell division protein FtsH [Synechococcus sp. WH 7803] Length = 637 Score = 39.7 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 34/204 (16%), Positives = 68/204 (33%), Gaps = 45/204 (22%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ FS + + Sbjct: 217 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEMFVGVGASRVRDLFKRAKENSPCL 276 Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + ND QL ++ +++ A P L Sbjct: 277 IFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEGNSGIIIIAATNRPDVLDSAL 336 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 ++ V + PD ++ ++++ + L I +R A Sbjct: 337 ------MRPGRFDRQVTVDAPDIKGRLSILEVHSRNKKLDPELSL-DSIARRTP-GFTGA 388 Query: 213 EKLVDKMDNLAL--SRGMGITRSL 234 L + ++ A+ +R T SL Sbjct: 389 -DLANLLNEAAILTARRRKETISL 411 >gi|17541224|ref|NP_501860.1| Mitochondrial Sorting of Proteins (yeast MSP) in Nematode family member (mspn-1) [Caenorhabditis elegans] gi|21903441|sp|P54815|MSP1_CAEEL RecName: Full=Mitochondrial sorting homolog gi|14530490|emb|CAA93516.2| C. elegans protein K04D7.2a, confirmed by transcript evidence [Caenorhabditis elegans] Length = 342 Score = 39.7 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 16/32 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P R ++L GP G GK+ LA + + + Sbjct: 116 PPRGILLYGPPGCGKTLLAKAVARAAGCRFIN 147 >gi|326429420|gb|EGD74990.1| skd/vacuolar sorting protein [Salpingoeca sp. ATCC 50818] Length = 435 Score = 39.7 bits (92), Expect = 0.33, Method: Composition-based stats. Identities = 13/37 (35%), Positives = 24/37 (64%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS 99 P R ++L GP G+GKS LA + ++ ++ F +++ S Sbjct: 158 PWRGILLYGPPGTGKSYLAKAVASEANNSTFISVSSS 194 >gi|301612800|ref|XP_002935905.1| PREDICTED: chromosome transmission fidelity protein 18 homolog [Xenopus (Silurana) tropicalis] Length = 982 Score = 39.7 bits (92), Expect = 0.33, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 19/88 (21%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILI------------------ 105 ++V +L GP G GK+ LA++ + + A S I Sbjct: 370 NKVALLCGPPGLGKTTLAHVIARHAGYNVVEMNASDDRSPEIFKTRIEAATQMKSVLGVD 429 Query: 106 DTRKPVLLEDID-LLDFNDTQLFHIINS 132 + +++++ID + L +IN Sbjct: 430 ERPNCLIIDEIDGAPTVSINMLLSLINR 457 >gi|253996802|ref|YP_003048866.1| recombination factor protein RarA [Methylotenera mobilis JLW8] gi|253983481|gb|ACT48339.1| AAA ATPase central domain protein [Methylotenera mobilis JLW8] Length = 435 Score = 39.7 bits (92), Expect = 0.33, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 5/83 (6%) Query: 58 SWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID 117 ++ S +IL GP G GK+ LA + ++ + + F I+ L I L E Sbjct: 42 AFQSGKLPSMILWGPPGVGKTTLARLIANTADAE-FIPISAVLSGIKDIREAVELAEHTL 100 Query: 118 LLDFNDTQLF----HIINSIHQY 136 T LF H N Q Sbjct: 101 QQHRRKTILFVDEVHRFNKGQQD 123 >gi|256820268|ref|YP_003141547.1| recombination factor protein RarA [Capnocytophaga ochracea DSM 7271] gi|256581851|gb|ACU92986.1| AAA ATPase central domain protein [Capnocytophaga ochracea DSM 7271] Length = 426 Score = 39.7 bits (92), Expect = 0.33, Method: Composition-based stats. Identities = 13/35 (37%), Positives = 20/35 (57%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS 99 +I GP G+GK+ LANI + +S ++ A S Sbjct: 40 PSLIFWGPPGTGKTTLANIIAHQSNRAFYTLSAIS 74 >gi|255582646|ref|XP_002532103.1| Protein MSP1, putative [Ricinus communis] gi|223528225|gb|EEF30282.1| Protein MSP1, putative [Ricinus communis] Length = 323 Score = 39.7 bits (92), Expect = 0.33, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 22/40 (55%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P + ++L GP G+GK+ LA + ++ + S +L S Sbjct: 69 PCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS 108 >gi|92113209|ref|YP_573137.1| AAA ATPase, central region [Chromohalobacter salexigens DSM 3043] gi|91796299|gb|ABE58438.1| AAA ATPase, central region [Chromohalobacter salexigens DSM 3043] Length = 360 Score = 39.7 bits (92), Expect = 0.33, Method: Composition-based stats. Identities = 33/206 (16%), Positives = 70/206 (33%), Gaps = 38/206 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSR-STRFSNIAKSLD--------------SILIDT 107 P+R ++ GP G GK+ AN +++ S ++A + ++ Sbjct: 119 PTRTMLFTGPPGVGKTLAANWLAERVGKSIIVLDLAAVMSSYLGQTGNNLKKVIEEAGNS 178 Query: 108 RKPVLLEDIDLLD------FNDTQLFHIINSIHQ-----YDSSLLMTARTFPVSWGVCLP 156 + L++ D + + +L ++N + Q LL+ A P Sbjct: 179 GSVLFLDEFDAIAKRRGDDGDIGELKRLVNVLLQSLDSWSKDGLLIAATNHPEMLD---- 234 Query: 157 DLCSRLKAA---TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMER-SLVFA 212 R VV+ PD + + K+I + ++ L + +E S Sbjct: 235 ----RAVWRRFDRVVEFDNPDIEHIFKLIKGRVVYSGVEVNDSLIKTASKTLEGCSYSDV 290 Query: 213 EKLVDKMDNLALSRGMGITRSLAAEV 238 + V + ++ G+ + V Sbjct: 291 DNWVSSVFRASVVNGVEVEEKFLERV 316 >gi|26990707|ref|NP_746132.1| recombination factor protein RarA [Pseudomonas putida KT2440] gi|24985700|gb|AAN69596.1|AE016593_4 ATPase, AAA family [Pseudomonas putida KT2440] gi|313498109|gb|ADR59475.1| Recombination factor protein RarA [Pseudomonas putida BIRD-1] Length = 441 Score = 39.7 bits (92), Expect = 0.33, Method: Composition-based stats. Identities = 34/210 (16%), Positives = 73/210 (34%), Gaps = 32/210 (15%) Query: 57 DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 ++ +I GP G GK+ LA + + + F ++ L + + + + Sbjct: 40 EALEQGALHSMIFWGPPGVGKTTLARLLAQFCDAH-FETVSAVLAGVKEIRQAVEVAKQQ 98 Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162 T LF H N Q D +LL T L SR Sbjct: 99 AGQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTLLFIGATTENPSFELNNA---LLSR- 154 Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLV 216 A V + D+ L K++ + + R + + ++ + +++ Sbjct: 155 --ARVYVLKSLDEAALRKLVNRALTEERGLGKRNLRVGDDAFKMLMAAAD---GDGRRML 209 Query: 217 DKMDNLA-LSR-GMGITRSLAAEVLKETQQ 244 + ++N + L+ G I + +L ++++ Sbjct: 210 NFLENASDLAEDGSEIDVEMLQSLLGDSRR 239 >gi|68535618|ref|YP_250323.1| ATP-dependent protease ATP-binding subunit [Corynebacterium jeikeium K411] gi|68263217|emb|CAI36705.1| ATP-dependent Clp protease, ATP-binding subunit [Corynebacterium jeikeium K411] Length = 424 Score = 39.7 bits (92), Expect = 0.33, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 7/75 (9%) Query: 45 VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL 104 V + A R D S +++L GP+GSGK+ LA + R ++ ++ Sbjct: 96 VEESNAAARRSDDEVELAKSNILML-GPTGSGKTYLAQSLA------RMLDVPFAIADAT 148 Query: 105 IDTRKPVLLEDIDLL 119 T + ED++ + Sbjct: 149 SLTEAGYVGEDVENI 163 >gi|24987361|pdb|1IXR|C Chain C, Ruva-Ruvb Complex Length = 312 Score = 39.7 bits (92), Expect = 0.33, Method: Composition-based stats. Identities = 27/193 (13%), Positives = 74/193 (38%), Gaps = 29/193 (15%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSILIDTRKPVLL 113 P ++L GP G GK+ LA++ + + + ++ + ++ + + Sbjct: 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLEEGDILFI 96 Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD---------------- 157 ++I L + H+ ++ + +++ + + LP Sbjct: 97 DEIHRLSRQAEE--HLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAP 154 Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 L SR ++ P++ L + +++ + I ++ A I +R ++ A++L Sbjct: 155 LLSRFGIVEHLEYYTPEE--LAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFR 212 Query: 218 KMDNLALSRGMGI 230 ++ + A G + Sbjct: 213 RVRDFAQVAGEEV 225 >gi|330990290|ref|ZP_08314262.1| Insertion sequence IS21 putative ATP-binding protein [Gluconacetobacter sp. SXCC-1] gi|330991140|ref|ZP_08315094.1| Insertion sequence IS21 putative ATP-binding protein [Gluconacetobacter sp. SXCC-1] gi|330991989|ref|ZP_08315938.1| Insertion sequence IS21 putative ATP-binding protein [Gluconacetobacter sp. SXCC-1] gi|330992231|ref|ZP_08316179.1| Insertion sequence IS21 putative ATP-binding protein [Gluconacetobacter sp. SXCC-1] gi|330992557|ref|ZP_08316505.1| Insertion sequence IS21 putative ATP-binding protein [Gluconacetobacter sp. SXCC-1] gi|330994383|ref|ZP_08318310.1| Insertion sequence IS21 putative ATP-binding protein [Gluconacetobacter sp. SXCC-1] gi|329758578|gb|EGG75095.1| Insertion sequence IS21 putative ATP-binding protein [Gluconacetobacter sp. SXCC-1] gi|329760430|gb|EGG76926.1| Insertion sequence IS21 putative ATP-binding protein [Gluconacetobacter sp. SXCC-1] gi|329760756|gb|EGG77252.1| Insertion sequence IS21 putative ATP-binding protein [Gluconacetobacter sp. SXCC-1] gi|329761010|gb|EGG77505.1| Insertion sequence IS21 putative ATP-binding protein [Gluconacetobacter sp. SXCC-1] gi|329761961|gb|EGG78451.1| Insertion sequence IS21 putative ATP-binding protein [Gluconacetobacter sp. SXCC-1] gi|329762656|gb|EGG79128.1| Insertion sequence IS21 putative ATP-binding protein [Gluconacetobacter sp. SXCC-1] Length = 264 Score = 39.7 bits (92), Expect = 0.33, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 47/108 (43%), Gaps = 23/108 (21%) Query: 67 VILVGPSGSGKSCLANIWS--------DKSRSTRFSNIAKSLDSILIDTRKPVLLE---D 115 V+L+G G+GK+ LA + K+R ++ +L+ R + + Sbjct: 110 VVLIGGPGTGKTHLATALAIQAITHHRKKARFWSTVDLVNALEQEKTANRAGQIADRLLR 169 Query: 116 IDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 +DL+ ++ LFH+++ +++ +S+++T WG Sbjct: 170 LDLVILDELGYLPFSASGGALLFHLLSRLYER-TSVIITTNLSFSEWG 216 >gi|327262399|ref|XP_003216012.1| PREDICTED: spastin-like [Anolis carolinensis] Length = 627 Score = 39.7 bits (92), Expect = 0.33, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 30/50 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S ST F+ A SL S + + ++ Sbjct: 386 PARGLLLFGPPGNGKTMLAKAVAAESNSTFFNISAASLTSKYVGEGEKLV 435 >gi|301623590|ref|XP_002941102.1| PREDICTED: spermatogenesis-associated protein 5-like [Xenopus (Silurana) tropicalis] Length = 792 Score = 39.7 bits (92), Expect = 0.33, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 46/124 (37%), Gaps = 31/124 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTR------------FSNIAKSLDSILIDTRKP 110 P R V+L GP G+GK+ +A +++ + + L I D + Sbjct: 287 PPRGVLLYGPPGTGKTLIARAIANEVGAHVTVINGPEIVSKFYGESEARLRQIFADASQC 346 Query: 111 ----VLLEDIDLL------DFNDTQ------LFHIINSI--HQYDSSLLMTART-FPVSW 151 + ++++D L N+ + L +++ I + LL+ T P S Sbjct: 347 CPSIIFIDELDALCPKREGAQNEVEKRVVASLLTLMDGIGSEESQGQLLVLGATNRPHSL 406 Query: 152 GVCL 155 L Sbjct: 407 DPAL 410 >gi|255743754|ref|ZP_05417712.1| IstB domain protein ATP-binding protein [Vibrio cholera CIRS 101] gi|255738615|gb|EET94002.1| IstB domain protein ATP-binding protein [Vibrio cholera CIRS 101] gi|259156228|gb|ACV96175.1| IstB domain protein ATP-binding protein [Vibrio cholerae Ban5] gi|259156420|gb|ACV96365.1| IstB domain protein ATP-binding protein [Vibrio cholerae Ind5] Length = 251 Score = 39.7 bits (92), Expect = 0.33, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 51/137 (37%), Gaps = 40/137 (29%) Query: 38 ISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA-----NIWSDKSRSTR 92 + R D + S ++LVG G+GK+ LA R Sbjct: 89 LHRCDFIQSSQN-----------------IVLVGGPGTGKTHLATALGVQAIQHHQLRVR 131 Query: 93 FSNIAKSLDSILIDTRK------PVLLEDIDLLDFND-----------TQLFHIINSIHQ 135 F + + ++++ ++ RK L +D++ ++ LFH++ +++ Sbjct: 132 FISTLELVNALELEKRKDQTGRIASRLSGVDVVILDELGYVPFSQHGGALLFHLLAKLYE 191 Query: 136 YDSSLLMTARTFPVSWG 152 +S+++T W Sbjct: 192 -KTSVIITTNLSFSEWP 207 >gi|224008350|ref|XP_002293134.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220971260|gb|EED89595.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 423 Score = 39.7 bits (92), Expect = 0.33, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 23/38 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P + ++L GP G+GKS LA + ++ ST FS + L Sbjct: 161 PFKGILLYGPPGTGKSYLAKAVATEADSTFFSVSSADL 198 >gi|226496269|ref|NP_001145759.1| hypothetical protein LOC100279266 [Zea mays] gi|219884327|gb|ACL52538.1| unknown [Zea mays] Length = 476 Score = 39.7 bits (92), Expect = 0.33, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 25/101 (24%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110 P ++L GP G GK+ LA+ ++++ + A + S + + Sbjct: 222 PVAGLLLHGPPGCGKTTLAHAIANETGVPFYKISAPEVVSGVSGASEENIRGLFQKAYRT 281 Query: 111 ----VLLEDIDLLDFNDTQLFHIINSIHQYDSSL---LMTA 144 V +++ID + N + + + LMT Sbjct: 282 APSIVFIDEIDAIASKRE------NLQREMERRIVTQLMTC 316 >gi|195047372|ref|XP_001992328.1| GH24269 [Drosophila grimshawi] gi|193893169|gb|EDV92035.1| GH24269 [Drosophila grimshawi] Length = 522 Score = 39.7 bits (92), Expect = 0.33, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 35/101 (34%), Gaps = 25/101 (24%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTR-FSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 P R ++L GP GSGK+ LA ++R F NI S+ +L Sbjct: 281 PWRSLLLHGPPGSGKTFLAKALYAETRGIVTFFNITASIMVSKWRGESEKIL-------- 332 Query: 122 NDTQLFHIINSIHQYDSSLLMTARTFPVSWGV-CLPDLCSR 161 LFH M AR P + L SR Sbjct: 333 --RVLFH-------------MAARRAPSVIFFDEIESLTSR 358 >gi|193215075|ref|YP_001996274.1| ATP-dependent metalloprotease FtsH [Chloroherpeton thalassium ATCC 35110] gi|193088552|gb|ACF13827.1| ATP-dependent metalloprotease FtsH [Chloroherpeton thalassium ATCC 35110] Length = 700 Score = 39.7 bits (92), Expect = 0.33, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 23/48 (47%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 V+LVGP G+GK+ LA + ++ + FS + + + + Sbjct: 229 VLLVGPPGTGKTLLAKAVAGEAGAPFFSISGSDFVEMFVGVGAARVRD 276 >gi|167648172|ref|YP_001685835.1| ABC transporter-like protein [Caulobacter sp. K31] gi|167350602|gb|ABZ73337.1| ABC transporter related [Caulobacter sp. K31] Length = 245 Score = 39.7 bits (92), Expect = 0.33, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 9/73 (12%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI--DLLD 120 P ++L+GPSGSGKS L NI R+T S I + P L D + Sbjct: 44 PGETLVLLGPSGSGKSTLLNILGGLDRATSGS---VRFGEIELAGANPAALTRYRRDSVG 100 Query: 121 FNDTQLFHIINSI 133 F +F N + Sbjct: 101 F----IFQFFNLV 109 >gi|108947452|gb|ABG24029.1| rep [Porcine circovirus 1] Length = 312 Score = 39.7 bits (92), Expect = 0.33, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 12/102 (11%) Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI-DL 118 W + V ++VGP G GKS A +++ S + + K D + V+L+D Sbjct: 160 RDWKTAVHVIVGPPGCGKSQWARNFAEPSDTYWKPSRNKWWDG--YHGEEVVVLDDFYGW 217 Query: 119 LDFND-TQLFHIINSIHQYDS--------SLLMTARTFPVSW 151 L ++D +L + S+L+T+ P W Sbjct: 218 LPWDDLLRLCDRYPLAIETKGGTVPFLARSILITSNQAPQEW 259 >gi|108947455|gb|ABG24031.1| rep [Porcine circovirus 1] Length = 312 Score = 39.7 bits (92), Expect = 0.33, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 12/102 (11%) Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI-DL 118 W + V ++VGP G GKS A +++ S + + K D + V+L+D Sbjct: 160 RDWKTAVHVIVGPPGCGKSQWARNFAEPSDTYWKPSRNKWWDG--YHGEEVVVLDDFYGW 217 Query: 119 LDFND-TQLFHIINSIHQYDS--------SLLMTARTFPVSW 151 L ++D +L + S+L+T+ P W Sbjct: 218 LPWDDLLRLCDRYPLAIETKGGTVPFLARSILITSNQAPQEW 259 >gi|90407805|ref|ZP_01215982.1| putative ATPase protein [Psychromonas sp. CNPT3] gi|90311070|gb|EAS39178.1| putative ATPase protein [Psychromonas sp. CNPT3] Length = 439 Score = 39.7 bits (92), Expect = 0.33, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 53/153 (34%), Gaps = 23/153 (15%) Query: 57 DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 + + + +IL GP G+GK+ LA + + + ++ + + D R + + Sbjct: 41 KALEAGAAHSMILWGPPGTGKTTLAELIAHYCDAHV--ERLSAVTAGIKDIRAAIEIGKQ 98 Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162 + T LF H N Q D +LL T L SR Sbjct: 99 NQSRGMRTLLFVDEVHRFNKTQQDAFLPFIEDGTLLFIGATTENPSFELNNA---LLSR- 154 Query: 163 KAATVVKISLPDDDFLEKVIVKMF-ADRQIFID 194 A V + +D + +VI + A + Sbjct: 155 --ARVYLLKKLSEDEIVEVIDQACHAQDGLKAH 185 >gi|34783985|gb|AAH57997.1| Psmc6 protein [Mus musculus] Length = 382 Score = 39.7 bits (92), Expect = 0.33, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + ++ S+ I ++ E Sbjct: 159 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 210 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 211 ------MFNYARDHQ 219 >gi|50291367|ref|XP_448116.1| hypothetical protein [Candida glabrata CBS 138] gi|49527427|emb|CAG61067.1| unnamed protein product [Candida glabrata] Length = 830 Score = 39.7 bits (92), Expect = 0.33, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 64/166 (38%), Gaps = 50/166 (30%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R V++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 247 PPRGVLMYGPPGTGKTLMARAVANETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEKN 306 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW--- 151 + +++ID + QL +++ + + +++ A P S Sbjct: 307 APAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNVVVIAATNRPNSIDPA 366 Query: 152 -----------GVCLPDLCSRLKAATVVKIS-----LPDDDFLEKV 181 + +PD RL+ V++I L DD LE + Sbjct: 367 LRRFGRFDREVDIGIPDATGRLE---VLRIHTKNMKLADDVDLETL 409 Score = 37.1 bits (85), Expect = 2.2, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 16/74 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 PS+ V+ GP G+GK+ LA + + + SNI D Sbjct: 520 PSKGVLFYGPPGTGKTLLAKAVATEVSANFISVKGPELLSMWYGESESNIRDIFDKARAA 579 Query: 107 TRKPVLLEDIDLLD 120 V L+++D + Sbjct: 580 APTVVFLDELDSIA 593 >gi|87306773|ref|ZP_01088920.1| cell division protein FtsH [Blastopirellula marina DSM 3645] gi|87290952|gb|EAQ82839.1| cell division protein FtsH [Blastopirellula marina DSM 3645] Length = 356 Score = 39.7 bits (92), Expect = 0.33, Method: Composition-based stats. Identities = 16/43 (37%), Positives = 24/43 (55%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109 V+LVGP G+GK+ LA + ++ T FS A +L L + Sbjct: 242 VLLVGPPGTGKTLLAKAIAGEAGVTFFSLSALTLSRCLSASAP 284 >gi|302839619|ref|XP_002951366.1| hypothetical protein VOLCADRAFT_41454 [Volvox carteri f. nagariensis] gi|300263341|gb|EFJ47542.1| hypothetical protein VOLCADRAFT_41454 [Volvox carteri f. nagariensis] Length = 572 Score = 39.7 bits (92), Expect = 0.33, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 13/91 (14%) Query: 47 SAIEQAVRLIDSWP------------SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 A QA+R + SWP WP R ++L GP G GK+ L + ++ + Sbjct: 5 PAALQAIRELVSWPVLYGKEGAALGVRWP-RGLLLHGPPGCGKTLLVQAVAAEAGARLHV 63 Query: 95 NIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125 A S+ + L E + Sbjct: 64 VTAASVLGPYTGESERRLREAFARAREDADA 94 >gi|254556460|ref|YP_003062877.1| recombination factor protein RarA [Lactobacillus plantarum JDM1] gi|254045387|gb|ACT62180.1| recombination factor protein RarA [Lactobacillus plantarum JDM1] Length = 449 Score = 39.7 bits (92), Expect = 0.33, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 56/155 (36%), Gaps = 22/155 (14%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLD-- 120 +I GP G GK+ LA I + +++S FS + + I + D Sbjct: 52 PSLIFWGPPGVGKTTLAEIIAQQTQSHFITFSAVTSGIKEIRQIMDEAEANRDFGEKTIV 111 Query: 121 -FNDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 ++ H N + S L+ A T S+ + L SR K V+K Sbjct: 112 FIDEI---HRFNKAQQDAFLPYVERGSITLIGATTENPSFEINAA-LLSRCK-VLVLKAL 166 Query: 172 LPD--DDFLEKVIV--KMFADRQIFIDKKLAAYIV 202 P+ + L+ + K F D +I + I Sbjct: 167 TPNALEAVLQGALQNPKGFPDLEITMQPDTLRLIA 201 >gi|226533443|ref|NP_001150145.1| vacuolar sorting protein 4b [Zea mays] gi|195637104|gb|ACG38020.1| vacuolar sorting protein 4b [Zea mays] Length = 435 Score = 39.7 bits (92), Expect = 0.33, Method: Composition-based stats. Identities = 15/32 (46%), Positives = 20/32 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P R +L GP G+GKS LA + ++ ST FS Sbjct: 164 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFS 195 >gi|307152321|ref|YP_003887705.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822] gi|306982549|gb|ADN14430.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822] Length = 672 Score = 39.7 bits (92), Expect = 0.33, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 25/48 (52%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 V+LVGP G+GK+ LA + ++ T FS A + + T + + Sbjct: 240 VLLVGPPGTGKTLLAKAVAGEAGVTFFSISASEFVELFVGTGAARVRD 287 >gi|168025980|ref|XP_001765511.1| predicted protein [Physcomitrella patens subsp. patens] gi|162683361|gb|EDQ69772.1| predicted protein [Physcomitrella patens subsp. patens] Length = 442 Score = 39.7 bits (92), Expect = 0.33, Method: Composition-based stats. Identities = 15/32 (46%), Positives = 20/32 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P R +L GP G+GKS LA + ++ ST FS Sbjct: 168 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFS 199 >gi|153814066|ref|ZP_01966734.1| hypothetical protein RUMTOR_00274 [Ruminococcus torques ATCC 27756] gi|317499823|ref|ZP_07958061.1| hypothetical protein HMPREF1026_00003 [Lachnospiraceae bacterium 8_1_57FAA] gi|331087903|ref|ZP_08336827.1| hypothetical protein HMPREF1025_00410 [Lachnospiraceae bacterium 3_1_46FAA] gi|145848462|gb|EDK25380.1| hypothetical protein RUMTOR_00274 [Ruminococcus torques ATCC 27756] gi|316898725|gb|EFV20758.1| hypothetical protein HMPREF1026_00003 [Lachnospiraceae bacterium 8_1_57FAA] gi|330409390|gb|EGG88836.1| hypothetical protein HMPREF1025_00410 [Lachnospiraceae bacterium 3_1_46FAA] Length = 280 Score = 39.7 bits (92), Expect = 0.33, Method: Composition-based stats. Identities = 16/104 (15%), Positives = 41/104 (39%), Gaps = 18/104 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL---------------IDTRKPV 111 +L GP G+GKS +A ++ + + + ++I+ + + + Sbjct: 113 FLLWGPIGTGKSYIAGCIANALLNREITVKMTNFNTIIDDMFPLEDKTEYINALARYELL 172 Query: 112 LLEDIDLLDFNDTQL---FHIINSIHQYDSSLLMTARTFPVSWG 152 +L+D+ ++ L F +I+ ++ L++T Sbjct: 173 ILDDLGTERNSEYALGIVFSVIDRRYRSGRPLIVTTNLPIKQLK 216 >gi|37894600|gb|AAF21428.2|AF165422_1 salt-induced AAA-Type ATPase [Mesembryanthemum crystallinum] Length = 434 Score = 39.7 bits (92), Expect = 0.33, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 22/38 (57%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P R +L GP G+GKS LA + ++ ST FS + L Sbjct: 163 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDL 200 >gi|45184711|ref|NP_982429.1| AAL113Wp [Ashbya gossypii ATCC 10895] gi|44980057|gb|AAS50253.1| AAL113Wp [Ashbya gossypii ATCC 10895] Length = 432 Score = 39.7 bits (92), Expect = 0.33, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 21/48 (43%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 V+L GP G+GK+ LA + + + A + I ++ E Sbjct: 213 VLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIRE 260 >gi|328773026|gb|EGF83063.1| hypothetical protein BATDEDRAFT_18251 [Batrachochytrium dendrobatidis JAM81] Length = 292 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 10/88 (11%) Query: 35 CLGISRDDLLVHSAIEQAVRLIDSWPS----------WPSRVVILVGPSGSGKSCLANIW 84 +S +D++ A +QA+R I P+ P+R V+L GP G+GK+ LA Sbjct: 13 KPNVSWEDIVGLDAAKQALREIVVLPNLRPELFTGLRAPARGVLLFGPPGTGKTMLAKAL 72 Query: 85 SDKSRSTRFSNIAKSLDSILIDTRKPVL 112 + +S++T FS A +L S + ++ Sbjct: 73 AKESKATFFSISASTLTSKYFGEGEKMV 100 >gi|320588158|gb|EFX00633.1| 26S protease regulatory subunit 6a [Grosmannia clavigera kw1407] Length = 468 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 24/160 (15%), Positives = 54/160 (33%), Gaps = 38/160 (23%) Query: 70 VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------------L 113 GP G+GK+ LA + ++ +T L + I ++ + Sbjct: 255 YGPPGTGKTLLARACAAQTDATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPAIIFI 314 Query: 114 EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCLPDL 158 +++D + + ++N D ++ A L L Sbjct: 315 DELDAVGTKRFDSTKSGDREVQRTMLELLNQLDGFASDDRIKVLAATNRVDVLDPAL--L 372 Query: 159 CS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 S RL ++ LP+++ +++ R++ ID + Sbjct: 373 RSGRLD--RKIEFPLPNEEARAQIL--KIHSRKMKIDAHV 408 >gi|255318063|ref|ZP_05359308.1| ATPase, AAA family [Acinetobacter radioresistens SK82] gi|255304886|gb|EET84058.1| ATPase, AAA family [Acinetobacter radioresistens SK82] Length = 423 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 68/176 (38%), Gaps = 31/176 (17%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAK-----SLDSILIDTRKP----VLLED 115 +I GP G GK+ +A + + S A L I+ ++ V +++ Sbjct: 43 PSIIFWGPPGVGKTTIALLLAQAVDRPFISLSALNTGVKELREIIAESGDLLTPVVFIDE 102 Query: 116 IDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 I + + ++N++ + L+ A T S+ V L SR V +++ D Sbjct: 103 IHRFNKSQQD--ALLNAV-EKGKITLIGATTENPSFEVNGA-LLSR---CQVYTLNILDS 155 Query: 176 DFLEKVIVKMFA------DRQIFID--KKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + ++ ++ K +R I I+ L + A K ++ +D +A Sbjct: 156 ESIQTLLDKALQTDEFLKERHIQIEEYDALIQFAA-------GDARKALNLLDLIA 204 >gi|242052161|ref|XP_002455226.1| hypothetical protein SORBIDRAFT_03g006580 [Sorghum bicolor] gi|241927201|gb|EES00346.1| hypothetical protein SORBIDRAFT_03g006580 [Sorghum bicolor] Length = 436 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 47/141 (33%), Gaps = 42/141 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN----------------IAKSLDSILID 106 P R +L GP G+GKS LA + ++ ST FS +A + Sbjct: 165 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVANLFQMAREN 224 Query: 107 TRKPVLLEDIDLLDFND--------------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 + +++ID L L + H D L++ A P + Sbjct: 225 APSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDDKVLVLAATNTPYALD 284 Query: 153 ------------VCLPDLCSR 161 + LPDL +R Sbjct: 285 QAVRRRFDKRIYIPLPDLKAR 305 >gi|168047196|ref|XP_001776057.1| predicted protein [Physcomitrella patens subsp. patens] gi|162672567|gb|EDQ59102.1| predicted protein [Physcomitrella patens subsp. patens] Length = 443 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 15/32 (46%), Positives = 20/32 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P R +L GP G+GKS LA + ++ ST FS Sbjct: 169 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFS 200 >gi|154321103|ref|XP_001559867.1| hypothetical protein BC1G_01426 [Botryotinia fuckeliana B05.10] gi|150851964|gb|EDN27156.1| hypothetical protein BC1G_01426 [Botryotinia fuckeliana B05.10] Length = 551 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 46/139 (33%), Gaps = 42/139 (30%) Query: 67 VILVGPSGSGKSCLANIWSDKSR------------STRFSNIAKSLDSILIDTRK----P 110 V+LVGP G+GK+ LA + ++ AK + + + Sbjct: 333 VLLVGPPGTGKTLLARAVAGEAGVPFFFMSGSEFDEIYVGVGAKRVRELFTAAKGKSPAI 392 Query: 111 VLLEDIDLLDFNDTQ------------LFHIINSIHQYDSSLLMTARTFPVSWG------ 152 + ++++D + L ++ Q + +++ A FP Sbjct: 393 IFIDELDAIGGKRNARDAAYSKQTLNQLLTELDGFAQNNGVIILAATNFPELLDKALTRP 452 Query: 153 --------VCLPDLCSRLK 163 V LPD+ RL Sbjct: 453 GRFDRNVVVGLPDVRGRLA 471 >gi|126657611|ref|ZP_01728766.1| cell division protein; FtsH [Cyanothece sp. CCY0110] gi|126621067|gb|EAZ91781.1| cell division protein; FtsH [Cyanothece sp. CCY0110] Length = 617 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 66/201 (32%), Gaps = 46/201 (22%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ FS + + Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFEQAKTNAPCI 257 Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 V +++ID + ND QL ++ +++ A P L Sbjct: 258 VFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLTEMDGFEGNTGIIIIAATNRPDVLDAAL 317 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211 L+ V + PD ++++ R + K + I +R Sbjct: 318 ------LRPGRFDRQVVVDRPDYAGRQEILKVHA--RGKTLSKDVDLDKIARRTP-GFTG 368 Query: 212 AEKLVDKMDNLA-LSRGMGIT 231 A L + ++ A L+ +T Sbjct: 369 A-DLSNLLNEAAILAARRNLT 388 >gi|145515974|ref|XP_001443881.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124411281|emb|CAK76484.1| unnamed protein product [Paramecium tetraurelia] Length = 484 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 58/162 (35%), Gaps = 43/162 (26%) Query: 55 LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS--------------- 99 +++ W + V+L GP G+GK+ LA + + R+T F+ A S Sbjct: 238 ILEPW-----KGVLLFGPPGTGKTMLAKAVATECRTTFFNVQASSVVSKWRGESEKLIRV 292 Query: 100 -LDSILIDTRKPVLLEDIDLL------DFNDTQ---------LFHIINSIHQYDSSLLMT 143 D + ++++D + N+ + L + + L+ Sbjct: 293 LFDLARHYEPSTIFIDEMDSIMGQRGSAGNEHEGGRRMKTELLIQLDGLLKSKKRVFLLA 352 Query: 144 ARTFPVSWGVC-LPDLCSRLKAATVVKISLPDDDFLEKVIVK 184 A P + L L R + I LPD + E +I + Sbjct: 353 ASNLPWDLDIAMLRRLEKR------IYIPLPDQESRESMIRR 388 >gi|22652796|gb|AAN03820.1|AF499028_1 AAA-ATPase-like protein [Oryza sativa Japonica Group] Length = 408 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 47/141 (33%), Gaps = 42/141 (29%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN----------------IAKSLDSILID 106 P R +L GP G+GKS LA + ++ ST FS +A + Sbjct: 162 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVANLFQMAREN 221 Query: 107 TRKPVLLEDIDLLDFND--------------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 + +++ID L L + H D L++ A P + Sbjct: 222 APSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDDKVLVLAATNTPYALD 281 Query: 153 ------------VCLPDLCSR 161 + LPDL +R Sbjct: 282 QAVRRRFDKRIYIPLPDLKAR 302 >gi|169771463|ref|XP_001820201.1| AAA family ATPase [Aspergillus oryzae RIB40] gi|83768060|dbj|BAE58199.1| unnamed protein product [Aspergillus oryzae] Length = 527 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 29/199 (14%), Positives = 67/199 (33%), Gaps = 31/199 (15%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFS-------------NIAKSLDSILIDTRKPV 111 +IL G G+GK+ +A + + S + + + + RK + Sbjct: 150 PSMILWGGPGTGKTTIARVIASMVGSRFVEINSTSSGVAECKKIFSDAKSELNLTGRKTI 209 Query: 112 LL-EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 + ++I + +F + L+ A T S+ V L SR + Sbjct: 210 IFCDEIHRFSKSQQDVFL---GPVESGQVTLIGATTENPSFKVQNA-LLSR---CRTFTL 262 Query: 171 SLPDDDFLEKVIVKMFADRQ------IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 + D+ ++ ++ + +D +L Y+ + + A ++ ++ Sbjct: 263 TKLTDEDVKSILDRALQVEGPNYSPSALVDDELINYLAKFSD---GDARTSLNLLELAMD 319 Query: 225 SRGMG-ITRSLAAEVLKET 242 IT+ L +T Sbjct: 320 LSKRPGITKEELKRSLTKT 338 >gi|50120088|ref|YP_049255.1| ATP-dependent protease ATP-binding subunit ClpX [Pectobacterium atrosepticum SCRI1043] gi|61211478|sp|Q6D826|CLPX_ERWCT RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|49610614|emb|CAG74059.1| ATP-dependent Clp protease ATP-binding subunit [Pectobacterium atrosepticum SCRI1043] Length = 424 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 48/132 (36%), Gaps = 30/132 (22%) Query: 2 NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55 ++++E+ P ++++ P P + DD ++ Sbjct: 46 DIIREEIKEVAPHRERSALPT----------PHEIRRHLDDYVIGQEQAKKVLAVAVYNH 95 Query: 56 IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107 + S ++L+GP+GSGK+ LA + RF ++ ++ T Sbjct: 96 YKRLRNGDSSNGIELGKSNILLIGPTGSGKTLLAETLA------RFLDVPFTMADATTLT 149 Query: 108 RKPVLLEDIDLL 119 + ED++ + Sbjct: 150 EAGYVGEDVENI 161 >gi|113972023|ref|YP_735816.1| sporulation domain-containing protein [Shewanella sp. MR-4] gi|113886707|gb|ABI40759.1| Sporulation domain protein [Shewanella sp. MR-4] Length = 471 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 62/178 (34%), Gaps = 44/178 (24%) Query: 47 SAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS---DKSRSTRF---------- 93 + E V + S+ ++++LVG GSGK+ L + D+S + Sbjct: 10 PSQEALVERLHHVASYSDQLLVLVGAHGSGKTTLLTALATDFDESNAALVICPMHADNAE 69 Query: 94 ------------------SNIAKSLDSILIDTRKP--VLLEDIDLLDFNDTQLFH---II 130 ++A+++ + KP ++++D LL +L+ I+ Sbjct: 70 IRRKILVQLVSSPIFDDEISLAETILRVAPKQSKPLHIIIDDAHLLS---KELWAECIIL 126 Query: 131 NSIHQYDSSLLMTARTFPVSWGVCLPDL-CSRLKAATVVKISLPD----DDFLEKVIV 183 N + + +T P LP L S + V I + + ++ Sbjct: 127 NQVQCAGQRIAVTLAVPPAFLADLLPQLPESLRRQILPVSIDPLSLPEREALYQTLLR 184 >gi|73749380|ref|YP_308619.1| recA protein [Dehalococcoides sp. CBDB1] gi|147669989|ref|YP_001214807.1| recA protein [Dehalococcoides sp. BAV1] gi|289433338|ref|YP_003463211.1| recA protein [Dehalococcoides sp. GT] gi|73661096|emb|CAI83703.1| recA protein [Dehalococcoides sp. CBDB1] gi|146270937|gb|ABQ17929.1| recA protein [Dehalococcoides sp. BAV1] gi|288947058|gb|ADC74755.1| recA protein [Dehalococcoides sp. GT] Length = 337 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 8/91 (8%) Query: 42 DLLVHSAIEQAVRL-IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 + + S++ + L + P RV + GP GSGK+ LA +++ + Sbjct: 38 EFIPTSSLALDIALGVGGIPR--GRVAEIFGPEGSGKTTLAQHIIAQAQKMGEKAAYIDV 95 Query: 101 DSILIDTRKPVLLEDIDLL-----DFNDTQL 126 + L ++D L D + L Sbjct: 96 EHALDPKYASTCGVNLDELLISQPDTGEEAL 126 >gi|312072869|ref|XP_003139262.1| hypothetical protein LOAG_03677 [Loa loa] gi|307765567|gb|EFO24801.1| hypothetical protein LOAG_03677 [Loa loa] Length = 435 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 43/144 (29%), Gaps = 45/144 (31%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109 P + V+L GP G+GK+ A ++++ + I L + Sbjct: 210 PPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARSK 269 Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147 + ++ID + + +IN + + + +LM Sbjct: 270 KACLIFFDEIDAVGGARFDDGMGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 329 Query: 148 ------PVSW----GVCLPDLCSR 161 P LPDL R Sbjct: 330 DPALVRPGRLDRKIEFALPDLAGR 353 >gi|294675887|ref|YP_003576502.1| ATPase AAA [Rhodobacter capsulatus SB 1003] gi|294474707|gb|ADE84095.1| ATPase, AAA family [Rhodobacter capsulatus SB 1003] Length = 435 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 33/193 (17%), Positives = 65/193 (33%), Gaps = 33/193 (17%) Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDID 117 + VIL GP G GK+ +A + + +S + S I + + + Sbjct: 49 AAGSLGSVILWGPPGVGKTTIARLLAHESDRAFVQISAIFSGVPELRKVFDAA----KLR 104 Query: 118 LLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLK 163 + T LF H N + + LL+ T L SR + Sbjct: 105 MGQGRGTLLFVDEIHRFNKAQQDSFLPHMEDGTILLVGATTENPSFELNAA---LLSRAQ 161 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK----- 218 + ++SL D + L + + R + + +++ + A L+++ Sbjct: 162 VIVLERLSLADLERLAQRAEQAMG-RALPLKAPAREALLEMADGDGRAALNLIEQVMAWK 220 Query: 219 ----MDNLALSRG 227 +D AL+ Sbjct: 221 LPAPLDTEALASR 233 >gi|282895979|ref|ZP_06304010.1| Peptidase M41, FtsH [Raphidiopsis brookii D9] gi|281199089|gb|EFA73959.1| Peptidase M41, FtsH [Raphidiopsis brookii D9] Length = 613 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 65/201 (32%), Gaps = 46/201 (22%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ FS + + Sbjct: 194 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFEQAKSNAPCI 253 Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 V +++ID + ND QL ++ +++ A P L Sbjct: 254 VFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLTEMDGFEGNTGIIIIAATNRPDVLDSAL 313 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211 L+ V + PD +++ R + K + I +R Sbjct: 314 ------LRPGRFDRQVVVDRPDYGGRSEILRVHA--RGKTLSKDVDLDRIARRTP-GFTG 364 Query: 212 AEKLVDKMDNLA-LSRGMGIT 231 A L + ++ A L+ +T Sbjct: 365 A-DLSNLLNEAAILAARRNLT 384 >gi|255659636|ref|ZP_05405045.1| conserved hypothetical protein [Mitsuokella multacida DSM 20544] gi|260848198|gb|EEX68205.1| conserved hypothetical protein [Mitsuokella multacida DSM 20544] Length = 277 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%) Query: 66 VVILVGPSGSGKSCLANIWSDKSRS-TRFSNIAKSLDSILIDTRKP 110 V+ LVGPSG+GKS A I + K+ + + D ++ Sbjct: 3 VIALVGPSGTGKSHRALIVAHKNGADAIIDDGILIKDGKILAGHSA 48 >gi|224001990|ref|XP_002290667.1| cell division cycle protein 48 [Thalassiosira pseudonana CCMP1335] gi|220974089|gb|EED92419.1| cell division cycle protein 48 [Thalassiosira pseudonana CCMP1335] Length = 904 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 13/90 (14%) Query: 46 HSAIEQAVRLID----SWPSWPS------RVVILVGPSGSGKSCLANIWSDKSRSTRF-- 93 S + L++ W R V+L GPSG GK+ +A + ++ + F Sbjct: 311 SSHLAAVRELVELPLKHPELWTKLGINTPRGVLLTGPSGCGKTAMARAVAAETGAYFFVI 370 Query: 94 -SNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 S + +T ED + + Sbjct: 371 NGPEVISKRAGESETNLRRAFEDAEANAPD 400 Score = 37.8 bits (87), Expect = 1.4, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 18/32 (56%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 PS+ V+ GP G GK+ +A +++ + S Sbjct: 615 PSKGVLFYGPPGCGKTLMAKAIANECGANFIS 646 >gi|170097387|ref|XP_001879913.1| predicted protein [Laccaria bicolor S238N-H82] gi|164645316|gb|EDR09564.1| predicted protein [Laccaria bicolor S238N-H82] Length = 603 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 46/136 (33%), Gaps = 29/136 (21%) Query: 50 EQAVRLIDSWPSW------PSRVVIL-VGPSGSGKSCLANIWSDKSR---------STRF 93 A +D +W P R L GP G+GKS + + + + Sbjct: 253 GDAREFLDM-ENWYIDAGIPHRRGYLLYGPPGTGKSSTIHALAGELGMEIYSLSLAAGFV 311 Query: 94 SNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 + + I R L+EDID + + ++ LL +P G+ Sbjct: 312 DDSFLQRAAASIPKRAIFLIEDIDCAFPSREE--------GEHPMPLL---PGYPGMMGL 360 Query: 154 CLPDLCSRLKAATVVK 169 P L SR ++ + Sbjct: 361 G-PRLPSRTRSTVTLS 375 >gi|145344785|ref|XP_001416905.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144577131|gb|ABO95198.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 408 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 24/38 (63%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P++ V+L GP G+GK+ LA + +SR+ + + +L Sbjct: 120 PAKGVLLYGPPGTGKTLLAKALAKESRACFINVRSSTL 157 >gi|134097009|ref|YP_001102670.1| putative cell division protein [Saccharopolyspora erythraea NRRL 2338] gi|291006245|ref|ZP_06564218.1| putative cell division protein [Saccharopolyspora erythraea NRRL 2338] gi|133909632|emb|CAL99744.1| putative cell division protein [Saccharopolyspora erythraea NRRL 2338] Length = 795 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 56/197 (28%), Gaps = 62/197 (31%) Query: 22 KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRL--IDSWPSWPSRV----------VIL 69 K+K +QL P V A E L I + P R V+L Sbjct: 135 KSKAKQLTKDMP-KTLFGD----VAGADEAVEELHEIKDFLQNPGRYQALGAKIPKGVLL 189 Query: 70 VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP----------------VLL 113 GP G+GK+ LA + ++ +S + + V + Sbjct: 190 YGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKQNAPCIVFV 249 Query: 114 EDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSW------- 151 ++ID + + L + ++ +L+ A P Sbjct: 250 DEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFDSRGGIILIAATNRPDILDPALLRP 309 Query: 152 -------GVCLPDLCSR 161 V PDL R Sbjct: 310 GRFDRQIPVSAPDLRGR 326 >gi|124516172|gb|EAY57680.1| Vesicle-fusing ATPase [Leptospirillum rubarum] Length = 579 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 73/192 (38%), Gaps = 20/192 (10%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + V+L GP G GK+ +A ++ + S + + P LL + + Sbjct: 260 PPKGVLLYGPPGCGKTLIAKAVANSVGRRMEQVHGQDARSYFLHVKGPELLNKY--VGES 317 Query: 123 DTQLFHIINSIHQ---YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK-ISLPDD-DF 177 + Q+ + + +++ + + S +++ V + ++ D + Sbjct: 318 ERQIREVFARAREKAREGVPVIVFFDEMDSLFRTRGSGVSSDMESTIVPQFLAEIDGVER 377 Query: 178 LEKVIVKMFADRQIFIDKKLAAY----IVQRMER-SLVFAEKLVDKMDNLALSRGMGITR 232 L VIV ++RQ ID + + R++R + A+ + K A Sbjct: 378 LRNVIVIGASNRQDLIDPAILRPGRLDVRVRIDRPNEAKAKMIFAKYFRAA--------I 429 Query: 233 SLAAEVLKETQQ 244 L+ EVL + Q Sbjct: 430 PLSREVLSQFGQ 441 >gi|7141245|gb|AAF37267.1|AF220406_1 26S proteasome regulatory ATPase subunit S10b [Vitis riparia] Length = 197 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + + ++ ++ I ++ E Sbjct: 83 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIRE 134 >gi|47205942|emb|CAF93631.1| unnamed protein product [Tetraodon nigroviridis] Length = 389 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + ++ S+ I ++ E Sbjct: 166 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 217 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 218 ------MFNYARDHQ 226 >gi|20140283|sp|Q9KDI8|RUVB_BACHD RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB Length = 333 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 3/70 (4%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G GK+ L+ I +++ + +++ LE D+L ++ Sbjct: 56 VLLYGPPGLGKTTLSTIIANELGVQMRTTSGPAIERPGDLAAILTALEPGDVLFIDEI-- 113 Query: 127 FHIINSIHQY 136 H +N + + Sbjct: 114 -HRLNRMVEE 122 >gi|15613820|ref|NP_242123.1| recombination factor protein RarA [Bacillus halodurans C-125] gi|10173873|dbj|BAB04976.1| BH1257 [Bacillus halodurans C-125] Length = 428 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 21/146 (14%), Positives = 56/146 (38%), Gaps = 22/146 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTR---------FSNIAKSLDSILIDTRKPVLLEDID 117 +IL GP G GK+ +A + + + ++ ++ + + ++L+++ Sbjct: 43 MILYGPPGVGKTSIAQAIAGSTDTHYKLLNAVVNNKKDMEIVVEEAKMSGQLILILDEVH 102 Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 LD D L H+ L++ T + P + SR + +++ Sbjct: 103 RLDKGKQDFLLPHL------EKGLLILIGATTANPFHSINPAIRSR---CQIFELTPLTT 153 Query: 176 DFLEKVIVKMFADR--QIFIDKKLAA 199 D ++ + + D+ + + + + Sbjct: 154 DEIKVALTRALTDKTHGLGEEPVVIS 179 >gi|158312162|ref|YP_001504670.1| ATP-dependent metalloprotease FtsH [Frankia sp. EAN1pec] gi|158107567|gb|ABW09764.1| ATP-dependent metalloprotease FtsH [Frankia sp. EAN1pec] Length = 753 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 72/208 (34%), Gaps = 39/208 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110 V+L GP G+GK+ LA + ++ S + + + Sbjct: 201 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKANAPAI 260 Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + D + L + ++ +L+ A P L Sbjct: 261 IFVDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDVKGGVILIAATNRPDILDPAL 320 Query: 156 PDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 L R VV PD + I+K+ A + I + I+ R A Sbjct: 321 --LRPGRFDRQIVV--DRPD-LLGREAILKVHA-KGKPISSDVDMLIIARRTPGFTGA-D 373 Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKET 242 L + ++ AL R +++ +L+E+ Sbjct: 374 LANVLNEAALLAARSDVRFISSALLEES 401 >gi|328767147|gb|EGF77198.1| hypothetical protein BATDEDRAFT_91915 [Batrachochytrium dendrobatidis JAM81] Length = 377 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 20/40 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P + V+L GP G GK+ LA + +S + + +L Sbjct: 142 PPKGVLLYGPPGCGKTMLAKALAKESGACFINLHVSTLTE 181 >gi|324516307|gb|ADY46490.1| 26S protease regulatory subunit 7 [Ascaris suum] Length = 436 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 43/144 (29%), Gaps = 45/144 (31%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109 P + V+L GP G+GK+ A ++++ + I L + Sbjct: 211 PPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 270 Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147 + ++ID + + +IN + + + +LM Sbjct: 271 KACLIFFDEIDAVGGARFDDGMGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 330 Query: 148 ------PVSW----GVCLPDLCSR 161 P LPDL R Sbjct: 331 DPALVRPGRLDRKIEFALPDLAGR 354 >gi|320105914|ref|YP_004181504.1| ATP-dependent metalloprotease FtsH [Terriglobus saanensis SP1PR4] gi|319924435|gb|ADV81510.1| ATP-dependent metalloprotease FtsH [Terriglobus saanensis SP1PR4] Length = 639 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 67/196 (34%), Gaps = 43/196 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ FS + + Sbjct: 192 VLLVGPPGTGKTLLARAVAGEANVPFFSISGSDFVEMFVGVGASRVRDLFEQGKKNAPCI 251 Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + D + L + ++ D +L+ A P L Sbjct: 252 IFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFESNDGVILVAATNRPDVLDPAL 311 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 L+ V + PD E+V+ +++ + + + ++ R A Sbjct: 312 ------LRPGRFDRRVMVGRPDVRGREEVLRVHA--KKVPLSEDVNLNVLARGTPGFSGA 363 Query: 213 EKLVDKMDNLALSRGM 228 L + ++ AL+ Sbjct: 364 -DLANMVNEAALAAAR 378 >gi|237815625|ref|ZP_04594622.1| recombination factor protein RarA [Brucella abortus str. 2308 A] gi|237788923|gb|EEP63134.1| recombination factor protein RarA [Brucella abortus str. 2308 A] Length = 457 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 59/181 (32%), Gaps = 28/181 (15%) Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDID 117 S ++ GP G+GK+ +A + + ++ + S I + + Sbjct: 69 ASGSLGSMVFWGPPGTGKTTVARLLAGETDLAFEQISAIFSGVADLKRVFEAA----RAR 124 Query: 118 LLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLK 163 + T LF H N + + +L+ T L SR Sbjct: 125 RMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVILIGATTENPSFELNAA---LLSR-- 179 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 A V+ D + + ++ + + +D + A +++ + A L +++ Sbjct: 180 -ARVLTFHPHDSESIATLLKRAEEQEGQALPLDDEARASLIRMADGDGRAALTLAEEVWR 238 Query: 222 L 222 Sbjct: 239 A 239 >gi|229367834|gb|ACQ58897.1| 26S protease regulatory subunit S10B [Anoplopoma fimbria] Length = 389 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + ++ S+ I ++ E Sbjct: 166 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 217 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 218 ------MFNYARDHQ 226 >gi|255099320|ref|ZP_05328297.1| ABC transporter, ATP-binding protein [Clostridium difficile QCD-63q42] gi|255305154|ref|ZP_05349326.1| ABC transporter, ATP-binding protein [Clostridium difficile ATCC 43255] Length = 220 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 56/144 (38%), Gaps = 49/144 (34%) Query: 66 VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125 V++VG SGSGKS L +I + + T V++++I++ ++ + Sbjct: 35 FVVIVGKSGSGKSTLLHI----------------MAGLETPTNGDVIIDNINISSLDEKK 78 Query: 126 -----------LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 +F N I +L V + LP + I D Sbjct: 79 RSALRKEKLGLIFQSYNLI-----PVL------TVEENIKLP----------TINIKNKD 117 Query: 175 DDFLEKVIVKM-FADRQIFIDKKL 197 + ++ +++ + DR++++ +L Sbjct: 118 EAYINELMELLGIKDRRMYLPNQL 141 >gi|169829332|ref|YP_001699490.1| hypothetical protein Bsph_3886 [Lysinibacillus sphaericus C3-41] gi|168993820|gb|ACA41360.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41] Length = 420 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 31/211 (14%), Positives = 70/211 (33%), Gaps = 31/211 (14%) Query: 31 SFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR- 89 + D + ++I + ++L G G GK+ +AN + S+ Sbjct: 3 PLTLDEIVGHQDFI--GPNTALYKMI---QNEHVPSMLLYGEPGIGKTSIANAIAGSSQL 57 Query: 90 --------STRFSNIAKSLDSILIDTRKPVLLEDIDLLDF--NDTQLFHIINSIHQYDSS 139 ++ + I + + L++I + DT L H+ N S Sbjct: 58 PFFALNATRAGKKDVEDIVQEARISGKVLLFLDEIHRFNKLQQDTLLPHVEN------GS 111 Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD--RQI-----F 192 +++ T + P + SR + ++ + L +++ K AD R + Sbjct: 112 IVLIGATTENPYHDVNPAIRSR--CGEIYQLKRLTKENLMELVEKALADEKRGLGKYHFI 169 Query: 193 IDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + I + A L++ + + Sbjct: 170 LTDSQIERIAEAANGDARKALTLLESIYYAS 200 >gi|116794435|gb|ABK27142.1| unknown [Picea sitchensis] Length = 439 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 14/32 (43%), Positives = 20/32 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P R +L GP G+GKS LA + ++ ST +S Sbjct: 165 PWRAFLLYGPPGTGKSYLAKAVATEADSTFYS 196 >gi|152995071|ref|YP_001339906.1| PhoH family protein [Marinomonas sp. MWYL1] gi|150835995|gb|ABR69971.1| PhoH family protein [Marinomonas sp. MWYL1] Length = 468 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 8/76 (10%) Query: 50 EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109 A L+ S ++++ GP+GSGK+ LA + + + K + I++ Sbjct: 266 AMAFYLLRHD---NSDLMVMTGPAGSGKTLLALAY-----GLQVTMEEKRFNKIIVARST 317 Query: 110 PVLLEDIDLLDFNDTQ 125 P + EDI L + + Sbjct: 318 PPMAEDIGFLPGTEEE 333 >gi|108760934|ref|YP_630152.1| hypothetical protein MXAN_1907 [Myxococcus xanthus DK 1622] gi|108464814|gb|ABF89999.1| hypothetical protein MXAN_1907 [Myxococcus xanthus DK 1622] Length = 1260 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 33/217 (15%), Positives = 74/217 (34%), Gaps = 45/217 (20%) Query: 55 LIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRF------SNIAKSLDSILIDTR 108 L+D RV++L GPS GK+ LA + ++ F A + + Sbjct: 259 LLDRLRD--KRVLLLTGPSRCGKTFLAKWLAQAQQNRGFEIRRGDPQEATRFLLLAGEFD 316 Query: 109 KPVLLEDIDLLDFNDTQLFHIINSIHQ------YDSSLLMTA-----RTFPVSWGVCLPD 157 + ++E+ + ++ Q L++TA R + G+ P Sbjct: 317 RLFIIENAFEQAAASGTVRQTWEAVEQVIRELPEHCLLIVTASKESLRDMLDADGIPTP- 375 Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQI----------FIDKKLAAYI-----V 202 ++ V +++ D ++ K + + + ++ + Sbjct: 376 ----MEGFPWVDLTVRDPALANRIWQKHAELAGLSEVERERYSAHLRALVPDFLVQPGQL 431 Query: 203 QRMERSLVFAEKLVDKMDNLALSRGMGIT-RSLAAEV 238 + + R+ E ++ +D + +LAAEV Sbjct: 432 RHLARNFPKGETRLEDLD-----SKARVNAIALAAEV 463 >gi|148656547|ref|YP_001276752.1| Holliday junction DNA helicase RuvB [Roseiflexus sp. RS-1] gi|166231550|sp|A5UVZ9|RUVB_ROSS1 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|148568657|gb|ABQ90802.1| Holliday junction DNA helicase RuvB [Roseiflexus sp. RS-1] Length = 347 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 35/205 (17%), Positives = 73/205 (35%), Gaps = 27/205 (13%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P +L GP G GK+ LA + + + +++ L+ D+L + Sbjct: 53 PLDHTLLYGPPGLGKTSLAGVLAAEMGVNIKLTSGPAIERAGDLAALLTNLQKDDILFID 112 Query: 123 DTQLFHIINSIHQ-------YDSSL-LMTARTF-PVSWGVCLPD------------LCS- 160 + H +N + D +L +M + S + LP L S Sbjct: 113 EI---HRLNRAIEEVLYPAMEDFALDIMVGKGPGARSLRLKLPRFTVIGATTRLALLTSP 169 Query: 161 -RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 R + +V ++ D L +++++ + + A I R + +L+ ++ Sbjct: 170 LRDRFGSVHRLEFYSVDALYQIVMRSARILGVDCTPEGAHEIAARARGTPRIVNRLLRRV 229 Query: 220 -DNLALSRGMGITRSLAAEVLKETQ 243 D + IT A + L + + Sbjct: 230 RDYAQVVGNGVITLETARDALAKLE 254 >gi|17987067|ref|NP_539701.1| recombination factor protein RarA [Brucella melitensis bv. 1 str. 16M] gi|17982724|gb|AAL51965.1| atpase associated with chromosome architecture/replication [Brucella melitensis bv. 1 str. 16M] Length = 457 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 59/181 (32%), Gaps = 28/181 (15%) Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDID 117 S ++ GP G+GK+ +A + + ++ + S I + + Sbjct: 69 ASGSLGSMVFWGPPGTGKTTVARLLAGETDLAFEQISAIFSGVADLKRVFEAA----RAR 124 Query: 118 LLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLK 163 + T LF H N + + +L+ T L SR Sbjct: 125 RMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVILIGATTENPSFELNAA---LLSR-- 179 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 A V+ D + + ++ + + +D + A +++ + A L +++ Sbjct: 180 -ARVLTFHPHDSESIATLLKRAEEQEGQALPLDDEARASLIRMADGDGRAALTLAEEVWR 238 Query: 222 L 222 Sbjct: 239 A 239 >gi|73748445|ref|YP_307684.1| Holliday junction DNA helicase RuvB [Dehalococcoides sp. CBDB1] gi|147669225|ref|YP_001214043.1| Holliday junction DNA helicase B [Dehalococcoides sp. BAV1] gi|97190027|sp|Q3ZWZ9|RUVB_DEHSC RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|189046030|sp|A5FRK7|RUVB_DEHSB RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|73660161|emb|CAI82768.1| Holliday junction DNA helicase RuvB [Dehalococcoides sp. CBDB1] gi|146270173|gb|ABQ17165.1| Holliday junction DNA helicase RuvB [Dehalococcoides sp. BAV1] Length = 349 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 37/200 (18%), Positives = 76/200 (38%), Gaps = 31/200 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTR----FSNIAKSLDSILIDTR----KPVLLEDIDL 118 V+L GP G GK+ L++I + + I + D I T + +++I Sbjct: 59 VLLYGPPGLGKTTLSHIIALEMGVNIRITSGPAIERQGDLAAILTNLKPFDILFIDEIHR 118 Query: 119 LDFNDTQLFHIINSIHQYDSSLLMTARTF-PVSWGVCLPD----------------LCSR 161 L N ++ + + + +M + S + LP L R Sbjct: 119 LSRNVEEVLYP---AMEDYALDIMVGKGPGARSLRLKLPHFTLIGATTRYAMLSAPLRDR 175 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 + + ++ D++ + ++ + + D+ I R + A +L+ ++ + Sbjct: 176 FGS--IFRLDFYDEEAIHDIVRRSARILGVEADENGLHQIACRSRGTPRVANRLLRRVRD 233 Query: 222 LALSRGMG-ITRSLAAEVLK 240 A +G G IT +AAE L Sbjct: 234 YAQVKGNGLITADIAAESLA 253 >gi|330958181|gb|EGH58441.1| recombination factor protein RarA [Pseudomonas syringae pv. maculicola str. ES4326] Length = 440 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 40/212 (18%), Positives = 73/212 (34%), Gaps = 36/212 (16%) Query: 57 DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 ++ +I GP G GK+ LA + + S + + A I V + Sbjct: 40 EALEQGALHSMIFWGPPGVGKTTLARLLAKVSDAHFETVSAVLAGVKEIRQAVEVAKQQA 99 Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162 T LF H N Q D +L+ T L SR Sbjct: 100 GQYGKR-TILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154 Query: 163 KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA--------EK 214 A V + D+ L K++ +R + DK L + ++ E + Sbjct: 155 --ARVYVLKSLDEAALRKLV-----NRALTEDKGLGQHKLRLSEEGFAMLMAAADGDGRR 207 Query: 215 LVDKMDNLA-LSR-GMGITRSLAAEVLKETQQ 244 +++ ++N + L+ G I L +L ++++ Sbjct: 208 MLNLLENASDLAEDGSEIDIELLQSLLGDSRR 239 >gi|331090669|ref|ZP_08339518.1| hypothetical protein HMPREF9477_00161 [Lachnospiraceae bacterium 2_1_46FAA] gi|330400083|gb|EGG79734.1| hypothetical protein HMPREF9477_00161 [Lachnospiraceae bacterium 2_1_46FAA] Length = 440 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 60/157 (38%), Gaps = 30/157 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL---LDFND 123 +I GPSG+GK+ LA + ++ + + A ++ ++E + Sbjct: 55 IIFYGPSGTGKTTLAKVIANTTSAEFMQMNATIAGKKDMEA----VIEQAKNNLGMYGKR 110 Query: 124 TQLF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 T LF H N + + +L+ A T + V L SR ++V ++ Sbjct: 111 TILFIDEIHRFNKGQQDYLLPFVEDGTVILIGATTENPYFEVNGA-LISR---SSVFELK 166 Query: 172 LPDDDFLEKVIVKMFAD-------RQIFIDKKLAAYI 201 + + ++ ++ + D + ID+ ++ Sbjct: 167 PLEREDIKILLKRAVYDTEKGMGTYRAEIDEDALEFL 203 >gi|325973631|ref|YP_004250695.1| holliday junction ATP-dependent DNA helicase, RuvB [Mycoplasma suis str. Illinois] gi|325990083|ref|YP_004249782.1| Holliday junction ATP-dependent DNA helicase RuvB [Mycoplasma suis KI3806] gi|323575168|emb|CBZ40830.1| Holliday junction ATP-dependent DNA helicase RuvB [Mycoplasma suis] gi|323652233|gb|ADX98315.1| holliday junction ATP-dependent DNA helicase, RuvB [Mycoplasma suis str. Illinois] Length = 319 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 27/62 (43%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P +L GP G GK+ LA I +++ + ++ ++ L D D+L + Sbjct: 39 PLEHTLLYGPPGVGKTSLAQIIANEMEVNIKIVPSTNIQTLPDLIGILNSLNDFDVLFID 98 Query: 123 DT 124 + Sbjct: 99 EI 100 >gi|300718476|ref|YP_003743279.1| glutamine ABC transporter ATP-binding protein [Erwinia billingiae Eb661] gi|299064312|emb|CAX61432.1| Glutamine ABC transporter, ATP-binding protein [Erwinia billingiae Eb661] Length = 257 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 9/74 (12%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P ++GPSGSGKS L + + + ++ + VL E+ D L Sbjct: 45 PGTTTCIIGPSGSGKSTLLR---------GINRLHEPKSGDVLLAGRSVLKENPDALRLR 95 Query: 123 DTQLFHIINSIHQY 136 +F N + Sbjct: 96 IGMVFQHFNLFPDH 109 >gi|291410705|ref|XP_002721627.1| PREDICTED: fidgetin-like 1 [Oryctolagus cuniculus] Length = 677 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 16/84 (19%) Query: 32 FPRCLGISRDDLLVHSAIEQAVRLIDS---WP----------SWPSRVVILVGPSGSGKS 78 +S +D+ + +E A I WP P + ++L GP G+GK+ Sbjct: 395 LDHGPPVSWEDI---AGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKT 451 Query: 79 CLANIWSDKSRSTRFSNIAKSLDS 102 + + +S +T FS A SL S Sbjct: 452 LIGKCIASQSGATFFSISASSLTS 475 >gi|256827685|ref|YP_003151644.1| Holliday junction DNA helicase, RuvB subunit [Cryptobacterium curtum DSM 15641] gi|256583828|gb|ACU94962.1| Holliday junction DNA helicase, RuvB subunit [Cryptobacterium curtum DSM 15641] Length = 342 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 3/70 (4%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++ GP G GK+ LA + +++ + + ++ LED D+L ++ Sbjct: 62 ILFSGPPGLGKTTLATVVANEMGAHIKTTSGPAIARTGDLAAILTNLEDGDVLFIDEI-- 119 Query: 127 FHIINSIHQY 136 H +N + + Sbjct: 120 -HRMNRMVEE 128 >gi|257784236|ref|YP_003179453.1| ABC transporter-like protein [Atopobium parvulum DSM 20469] gi|257472743|gb|ACV50862.1| ABC transporter related [Atopobium parvulum DSM 20469] Length = 286 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 20/73 (27%) Query: 62 WPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 WP VV+++GPSGSGKS + ++ + + +L+ED ++ Sbjct: 69 WPGEVVVVLGPSGSGKSTMLRC----------------INLLETPSAGHILIEDQEITGT 112 Query: 122 NDTQLFHIINSIH 134 N+ ++ N++ Sbjct: 113 NEAEV----NALR 121 >gi|255070529|ref|XP_002507346.1| AAA ATPase [Micromonas sp. RCC299] gi|226522621|gb|ACO68604.1| AAA ATPase [Micromonas sp. RCC299] Length = 770 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL 113 P+ ++L GPSGSGKS LA + + S+ S LI K L+ Sbjct: 238 PAPHIVLAGPSGSGKSLLAQLL-----ARIISDHDVSRHGPLIKASKNDLI 283 >gi|226309710|ref|YP_002769604.1| cell division protein FtsH homolog [Brevibacillus brevis NBRC 100599] gi|226092658|dbj|BAH41100.1| cell division protein FtsH homolog [Brevibacillus brevis NBRC 100599] Length = 648 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 33/214 (15%), Positives = 67/214 (31%), Gaps = 47/214 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ FS + + Sbjct: 205 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 264 Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + + L + ++ + +++ A P L Sbjct: 265 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGGNEGIIMIAATNRPDILDPAL 324 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 L+ + + PD E V+ R I + + ++ R A Sbjct: 325 ------LRPGRFDRQITVDRPDIKGREAVLKVHA--RNKPIGEDVKLEVIARGTSGFTGA 376 Query: 213 EKLVDKMDNLAL----SRGMGITRSLAAEVLKET 242 L + ++ AL IT + E + Sbjct: 377 -DLENLLNEAALLTARRNKKQITMTEVDEAIDRV 409 >gi|224014850|ref|XP_002297087.1| vacuolar protein sorting-associated protein [Thalassiosira pseudonana CCMP1335] gi|220968467|gb|EED86815.1| vacuolar protein sorting-associated protein [Thalassiosira pseudonana CCMP1335] Length = 423 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 23/38 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P + ++L GP G+GKS LA + ++ ST FS + L Sbjct: 161 PFKGILLYGPPGTGKSYLAKAVATEADSTFFSVSSADL 198 >gi|219116749|ref|XP_002179169.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217409060|gb|EEC48992.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 421 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 30/188 (15%), Positives = 62/188 (32%), Gaps = 48/188 (25%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT--------------RKPVL 112 V+L GP G+GK+ LA + +T +A ++ I +P + Sbjct: 202 VLLYGPPGTGKTLLARALASNISATFLKVVASAIVDKYIGESARIIREMFGFARDHEPCV 261 Query: 113 L--EDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCL 155 + ++ID + + L ++N + ++ A P L Sbjct: 262 IFMDEIDAIGGSRFSEGTSADREIQRTLMELLNQMDGFEEQGQVKMVMATNRPDILDPAL 321 Query: 156 PDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 L RL ++I P++ +++ + I +R + K Sbjct: 322 --LRPGRLD--RKIEIPEPNESQRLEILKIHASG------------ITKRGDIDFESVVK 365 Query: 215 LVDKMDNL 222 L D ++ Sbjct: 366 LADGLNGA 373 >gi|213963197|ref|ZP_03391454.1| ATPase, AAA family [Capnocytophaga sputigena Capno] gi|213954059|gb|EEB65384.1| ATPase, AAA family [Capnocytophaga sputigena Capno] Length = 425 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 13/35 (37%), Positives = 20/35 (57%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS 99 +I GP G+GK+ LANI + +S ++ A S Sbjct: 39 PSLIFWGPPGTGKTTLANIIAHQSNRAFYTLSAIS 73 >gi|241204199|ref|YP_002975295.1| recombination factor protein RarA [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858089|gb|ACS55756.1| AAA ATPase central domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 438 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 67/188 (35%), Gaps = 31/188 (16%) Query: 54 RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPV 111 R+I+ S +I GP G+GK+ +A + S ++ + S I + + Sbjct: 47 RMIE---SGSLGSMIFWGPPGTGKTTVARLLSGEAGLAFEQISAIFSGVADLKKVFETA- 102 Query: 112 LLEDIDLLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPD 157 + +D T LF H N + + +L+ T Sbjct: 103 ---RLRRMDGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVILVGATTENPSFELNAA--- 156 Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKL 215 L SR A V+ D++ LE+++ + Q + + + +++ + L Sbjct: 157 LLSR---ARVLTFKSHDEESLEELLKRAETIEQKPLPLTEDARVSLIRMADGDGRAVLTL 213 Query: 216 VDKMDNLA 223 +++ A Sbjct: 214 AEEVWRAA 221 >gi|153852824|ref|ZP_01994261.1| hypothetical protein DORLON_00243 [Dorea longicatena DSM 13814] gi|149754466|gb|EDM64397.1| hypothetical protein DORLON_00243 [Dorea longicatena DSM 13814] Length = 271 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 47/116 (40%), Gaps = 20/116 (17%) Query: 52 AVRLIDSWPSWPSRVV--ILVGPSGSGKSCLANIWSDK-----------SRSTRFSNIAK 98 A +D+W + + GP G+GKS +A +++ + +T +I Sbjct: 97 AKSYVDNWEEMKRNHIGCLFWGPVGTGKSYIAGCIANELLKQEVTVKMTNFNTIIDDIFP 156 Query: 99 SLDSI----LIDTRKPVLLEDIDLLDFNDTQL---FHIINSIHQYDSSLLMTARTF 147 D + + + ++++D+ + ++ L F +I+ + L++T Sbjct: 157 LADKTEYINALASYQLLIIDDLGVERNSEYALGIIFSVIDRRIRSGRPLIITTNLP 212 >gi|114762565|ref|ZP_01442009.1| putative transposase [Pelagibaca bermudensis HTCC2601] gi|114544820|gb|EAU47825.1| putative transposase [Roseovarius sp. HTCC2601] Length = 237 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 22/110 (20%) Query: 64 SRVVILVGPSGSGKSCLA-NIWSD------KSRSTRFSNIAKSLDSILID---TRKPVLL 113 R V+L+G +G+GKS LA +I + R ++ LD+ R LL Sbjct: 93 QRNVVLIGGTGTGKSHLAVSIARACIRRGKRGRFFNVVDLVNKLDAEARADRQGRTADLL 152 Query: 114 EDIDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 +D L ++ LFH+I+ +++ +S+++T W Sbjct: 153 CRLDFLILDELGYLPFAQTGGQLLFHLISRLYER-TSIIVTTNLDFGEWP 201 >gi|15234242|ref|NP_194498.1| MSP1 protein, putative / intramitochondrial sorting protein, putative [Arabidopsis thaliana] gi|4469019|emb|CAB38280.1| putative protein [Arabidopsis thaliana] gi|7269622|emb|CAB81418.1| putative protein [Arabidopsis thaliana] gi|20260328|gb|AAM13062.1| putative protein [Arabidopsis thaliana] gi|21553404|gb|AAM62497.1| 26S proteasome regulatory particle chain RPT6-like protein [Arabidopsis thaliana] gi|23197836|gb|AAN15445.1| putative protein [Arabidopsis thaliana] gi|110740771|dbj|BAE98483.1| hypothetical protein [Arabidopsis thaliana] gi|332659980|gb|AEE85380.1| 26S proteasome regulatory particle chain RPT6-like protein [Arabidopsis thaliana] Length = 398 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 19/32 (59%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + V+L GP G+GK+ LA + +S + + Sbjct: 118 PQKGVLLYGPPGTGKTMLAKAIAKESGAVFIN 149 >gi|114053003|ref|NP_001039705.1| 26S protease regulatory subunit 10B [Bos taurus] gi|119390895|sp|Q2KIW6|PRS10_BOVIN RecName: Full=26S protease regulatory subunit 10B; AltName: Full=26S proteasome AAA-ATPase subunit RPT4; AltName: Full=Proteasome 26S subunit ATPase 6 gi|86827363|gb|AAI12483.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Bos taurus] Length = 389 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + ++ S+ I ++ E Sbjct: 166 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 217 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 218 ------MFNYARDHQ 226 >gi|28175479|gb|AAH43044.1| Psmc6 protein [Mus musculus] Length = 390 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + ++ S+ I ++ E Sbjct: 167 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 218 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 219 ------MFNYARDHQ 227 >gi|45361531|ref|NP_989342.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Xenopus (Silurana) tropicalis] gi|39850228|gb|AAH64227.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Xenopus (Silurana) tropicalis] gi|89266829|emb|CAJ83423.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Xenopus (Silurana) tropicalis] Length = 389 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + ++ S+ I ++ E Sbjct: 166 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 217 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 218 ------MFNYARDHQ 226 >gi|22538114|ref|NP_688965.1| recombination factor protein RarA [Streptococcus agalactiae 2603V/R] gi|76799348|ref|ZP_00781508.1| ATPase, AAA family [Streptococcus agalactiae 18RS21] gi|22535021|gb|AAN00838.1|AE014281_7 ATPase, AAA family [Streptococcus agalactiae 2603V/R] gi|76585295|gb|EAO61893.1| ATPase, AAA family [Streptococcus agalactiae 18RS21] Length = 422 Score = 39.7 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 64/166 (38%), Gaps = 22/166 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKS-------RSTR--FSNIAKSLDSILIDTRKPVLLEDID 117 +IL GP G GK+ +A+ + + +T + + + +LL++I Sbjct: 42 MILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIH 101 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 LD + + + +++ A T + V P + SR + ++ ++ Sbjct: 102 RLDKTKQDFLLP---LLENGNIIMIGATTENPFFSVT-PAIRSR---VQIFELEPLSNED 154 Query: 178 LEKVIVKMFAD--RQ----IFIDKKLAAYIVQRMERSLVFAEKLVD 217 ++K I +D R + ID + +IV L A +D Sbjct: 155 IKKAIQLAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLD 200 >gi|326433811|gb|EGD79381.1| hypothetical protein PTSG_09791 [Salpingoeca sp. ATCC 50818] Length = 463 Score = 39.7 bits (92), Expect = 0.35, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 40/110 (36%), Gaps = 26/110 (23%) Query: 28 LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS-- 85 L S +L V AI QA P +R ++L GP G+GK+ LA + Sbjct: 217 LPLSLQHENAH---ELCVS-AITQA-----RLPGATARRILLFGPPGTGKTTLAVHAALA 267 Query: 86 ---------------DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120 + + + + IA + V+L+D++ L Sbjct: 268 SSPDYLKVIRASDLVELTDAHKSQRIAAAFRDAEKAKHAVVVLDDLERLA 317 >gi|320528059|ref|ZP_08029225.1| putative ATP-dependent metalloprotease [Solobacterium moorei F0204] gi|320131685|gb|EFW24249.1| putative ATP-dependent metalloprotease [Solobacterium moorei F0204] Length = 619 Score = 39.7 bits (92), Expect = 0.35, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 46/140 (32%), Gaps = 45/140 (32%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 ++LVGP G+GK+ LA + +S FS + + Sbjct: 206 ILLVGPPGTGKTMLAKAVAGESNVPFFSISGSEFVEMFVGMGASKVRSLFKDAKEKAPCI 265 Query: 111 VLLEDIDLLDF----------ND-----TQLFHIINSIHQYDSSLLMTARTFPVSW---- 151 V +++ID + ++ QL ++ + +++ A P + Sbjct: 266 VFIDEIDAIGGKRNAGNFGGNDEREQTLNQLLTEMDGFEGNNGIVVLAATNRPENLDPAL 325 Query: 152 ----------GVCLPDLCSR 161 V LPDL R Sbjct: 326 LRPGRFDRRVPVELPDLQGR 345 >gi|299472663|emb|CBN78315.1| ATP-binding cassette superfamily [Ectocarpus siliculosus] Length = 1982 Score = 39.7 bits (92), Expect = 0.35, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 16/82 (19%) Query: 62 WPSRVVILVGPSGSGKSCLANIWSDK-------------SRSTRFSNIAKSLDSILIDTR 108 W V ++GPSG+GK+ L N+ + + + + R + A + + Sbjct: 1397 WSGSVTAIMGPSGAGKTTLLNVLAGRMHRLGKKNNGGRVTGAVRINGRAVTAAEVRG-VS 1455 Query: 109 KPVLLEDI--DLLDFNDTQLFH 128 V ED+ + L + +FH Sbjct: 1456 GYVTQEDVLPETLTCFEHLMFH 1477 >gi|299144251|ref|ZP_07037331.1| cell division protein FtsH [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518736|gb|EFI42475.1| cell division protein FtsH [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 623 Score = 39.7 bits (92), Expect = 0.35, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 45/140 (32%), Gaps = 45/140 (32%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 +LVGP G+GK+ LA + ++ FS + + Sbjct: 218 ALLVGPPGTGKTLLAKAVAGEADVPFFSISGSEFVEMFVGLGAAKVRDLFKQAHEKAPCI 277 Query: 111 VLLEDIDLLD---------FNDT------QLFHIINSIHQYDSSLLMTARTFPVSW---- 151 V +++ID + ND QL ++ D +++ A P S Sbjct: 278 VFIDEIDTIGKRRDGAGISGNDEREQTLNQLLSEMDGFEGNDGVVILAATNRPESLDPAL 337 Query: 152 ----------GVCLPDLCSR 161 V LPDL R Sbjct: 338 LRPGRFDRRIPVELPDLAGR 357 >gi|282901690|ref|ZP_06309606.1| Peptidase M41, FtsH [Cylindrospermopsis raciborskii CS-505] gi|281193453|gb|EFA68434.1| Peptidase M41, FtsH [Cylindrospermopsis raciborskii CS-505] Length = 613 Score = 39.7 bits (92), Expect = 0.35, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 65/201 (32%), Gaps = 46/201 (22%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ FS + + Sbjct: 194 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFEQAKSNAPCI 253 Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 V +++ID + ND QL ++ +++ A P L Sbjct: 254 VFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLTEMDGFEGNTGIIIIAATNRPDVLDSAL 313 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211 L+ V + PD +++ R + K + I +R Sbjct: 314 ------LRPGRFDRQVVVDRPDYGGRSEILRVHA--RGKTLSKDVDLDRIARRTP-GFTG 364 Query: 212 AEKLVDKMDNLA-LSRGMGIT 231 A L + ++ A L+ +T Sbjct: 365 A-DLSNLLNEAAILAARRNLT 384 >gi|238610683|ref|XP_002397785.1| hypothetical protein MPER_01728 [Moniliophthora perniciosa FA553] gi|215472970|gb|EEB98715.1| hypothetical protein MPER_01728 [Moniliophthora perniciosa FA553] Length = 226 Score = 39.7 bits (92), Expect = 0.35, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 16/75 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILID 106 P R V+L GP G GK+ LAN + + + ++ D Sbjct: 85 PPRGVLLHGPPGCGKTLLANAIAGELGVPFVNISAPSIVSGMSGESEKGLREAFDEAKRV 144 Query: 107 TRKPVLLEDIDLLDF 121 + +++ID + Sbjct: 145 APSLLFIDEIDAITG 159 >gi|206602971|gb|EDZ39451.1| Vesicle-fusing ATPase [Leptospirillum sp. Group II '5-way CG'] Length = 579 Score = 39.7 bits (92), Expect = 0.35, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 73/192 (38%), Gaps = 20/192 (10%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + V+L GP G GK+ +A ++ + S + + P LL + + Sbjct: 260 PPKGVLLYGPPGCGKTLIAKAVANSVGRRMEQVHGQDARSYFLHVKGPELLNKY--VGES 317 Query: 123 DTQLFHIINSIHQ---YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK-ISLPDD-DF 177 + Q+ + + +++ + + S +++ V + ++ D + Sbjct: 318 ERQIREVFARAREKAREGVPVIVFFDEMDSLFRTRGSGVSSDMESTIVPQFLAEIDGVER 377 Query: 178 LEKVIVKMFADRQIFIDKKLAAY----IVQRMER-SLVFAEKLVDKMDNLALSRGMGITR 232 L VIV ++RQ ID + + R++R + A+ + K A Sbjct: 378 LRNVIVIGASNRQDLIDPAILRPGRLDVRVRIDRPNEAKAKMIFAKYFRAA--------I 429 Query: 233 SLAAEVLKETQQ 244 L+ EVL + Q Sbjct: 430 PLSREVLSQFGQ 441 >gi|194386940|dbj|BAG59836.1| unnamed protein product [Homo sapiens] Length = 667 Score = 39.7 bits (92), Expect = 0.35, Method: Composition-based stats. Identities = 12/33 (36%), Positives = 17/33 (51%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN 95 P R V+L GP G GK+ LA+ + S + Sbjct: 81 PPRGVLLHGPPGCGKTLLAHAIAGAECSGMITA 113 >gi|148665712|gb|EDK98128.1| mCG129012 [Mus musculus] Length = 255 Score = 39.7 bits (92), Expect = 0.35, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 21/38 (55%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P + VIL GP G+GK+ LA ++++ T + L Sbjct: 198 PPKEVILYGPPGTGKTLLAKAVANQTSGTFLRVVGSEL 235 >gi|226694319|sp|Q6NW58|SPAST_DANRE RecName: Full=Spastin gi|34539797|gb|AAQ74774.1| spastin [Danio rerio] gi|220673063|emb|CAX13091.1| spastin [Danio rerio] Length = 570 Score = 39.7 bits (92), Expect = 0.35, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 30/50 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S +T F+ A +L S + + ++ Sbjct: 327 PARGLLLFGPPGNGKTMLAKAVAMESNATFFNISAATLTSKYVGEGEKLV 376 >gi|28278099|gb|AAH45087.1| Psmc6 protein [Xenopus laevis] Length = 403 Score = 39.7 bits (92), Expect = 0.35, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + ++ S+ I ++ E Sbjct: 180 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 231 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 232 ------MFNYARDHQ 240 >gi|89896820|ref|YP_520307.1| hypothetical protein DSY4074 [Desulfitobacterium hafniense Y51] gi|89336268|dbj|BAE85863.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 611 Score = 39.7 bits (92), Expect = 0.35, Method: Composition-based stats. Identities = 39/219 (17%), Positives = 67/219 (30%), Gaps = 60/219 (27%) Query: 42 DLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLD 101 D L + A+ P + LVGP G+GK+ LA + +++ FS Sbjct: 188 DFLHDPSRYAAIG-----ADLPKGAL-LVGPPGTGKTLLAKAVAGEAKVPFFSISGSEFV 241 Query: 102 SILIDTRKP----------------VLLEDIDLL----------DFNDT------QLFHI 129 + + V +++ID + ND QL Sbjct: 242 EMFVGMGAAKVRDLFKQANEKAPCIVFIDEIDTIGKKRDGGSFGGGNDEREQTLNQLLSE 301 Query: 130 INSIHQYDSSLLMTARTFPVSW--------------GVCLPDLCSR---LK-AATVVKIS 171 ++ +++ A P S V LPDL R L+ VK+ Sbjct: 302 MDGFDGKKGVVILAATNRPESLDKALLRPGRFDRRIPVELPDLAGREAILRVHGQKVKMD 361 Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ--RMERS 208 P D + + + + ++ R RS Sbjct: 362 SPID--FKAIARATAGASGAELANIINEGALRAVRCGRS 398 >gi|116205431|ref|XP_001228526.1| hypothetical protein CHGG_10599 [Chaetomium globosum CBS 148.51] gi|88176727|gb|EAQ84195.1| hypothetical protein CHGG_10599 [Chaetomium globosum CBS 148.51] Length = 587 Score = 39.7 bits (92), Expect = 0.35, Method: Composition-based stats. Identities = 28/180 (15%), Positives = 63/180 (35%), Gaps = 33/180 (18%) Query: 44 LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFS--------- 94 LV LI+S +IL G SG+GK+ +A + + Sbjct: 178 LVGP-NGVLRSLIESDR---VPSMILWGGSGTGKTTIARCIARRVGCRFIELNATSTGVA 233 Query: 95 ----NIAKSLDSILIDTRKPVLL-EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPV 149 A++ + + + R+ ++ ++I + +F + + L+ A T Sbjct: 234 ECKKLFAEAANELGLTGRRTIIFCDEIHRFNKGQQDVFL---KPVEAGTITLIGATTENP 290 Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFA----DRQIFIDK----KLAAYI 201 S+ V L SR + +D ++ ++++ + + +L Y+ Sbjct: 291 SFRVQAA-LLSR---CRTFTLQSLTEDDIQHILLRALQQEVEQEGLELSPLIDQELLRYL 346 >gi|219667350|ref|YP_002457785.1| ATP-dependent metalloprotease FtsH [Desulfitobacterium hafniense DCB-2] gi|219537610|gb|ACL19349.1| ATP-dependent metalloprotease FtsH [Desulfitobacterium hafniense DCB-2] Length = 608 Score = 39.7 bits (92), Expect = 0.35, Method: Composition-based stats. Identities = 39/219 (17%), Positives = 67/219 (30%), Gaps = 60/219 (27%) Query: 42 DLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLD 101 D L + A+ P + LVGP G+GK+ LA + +++ FS Sbjct: 185 DFLHDPSRYAAIG-----ADLPKGAL-LVGPPGTGKTLLAKAVAGEAKVPFFSISGSEFV 238 Query: 102 SILIDTRKP----------------VLLEDIDLL----------DFNDT------QLFHI 129 + + V +++ID + ND QL Sbjct: 239 EMFVGMGAAKVRDLFKQANEKAPCIVFIDEIDTIGKKRDGGSFGGGNDEREQTLNQLLSE 298 Query: 130 INSIHQYDSSLLMTARTFPVSW--------------GVCLPDLCSR---LK-AATVVKIS 171 ++ +++ A P S V LPDL R L+ VK+ Sbjct: 299 MDGFDGKKGVVILAATNRPESLDKALLRPGRFDRRIPVELPDLAGREAILRVHGQKVKMD 358 Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ--RMERS 208 P D + + + + ++ R RS Sbjct: 359 SPID--FKAIARATAGASGAELANIINEGALRAVRCGRS 395 >gi|326469781|gb|EGD93790.1| sister chromatid cohesion factor [Trichophyton tonsurans CBS 112818] Length = 873 Score = 39.7 bits (92), Expect = 0.35, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 13/83 (15%) Query: 29 FFSFP--RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 FP + +D+ + DS ++++L GP G GK+ LA+I + Sbjct: 154 PIVFPGLAKPKVKKDNF----SN-------DSEERAHRKILLLTGPPGLGKTTLAHICAK 202 Query: 87 KSRSTRFSNIAKSLDSILIDTRK 109 + A S + T + Sbjct: 203 QVGYEVLEINASDERSRTVVTGR 225 >gi|325290187|ref|YP_004266368.1| Chromosomal replication initiator DnaA [Syntrophobotulus glycolicus DSM 8271] gi|324965588|gb|ADY56367.1| Chromosomal replication initiator DnaA [Syntrophobotulus glycolicus DSM 8271] Length = 198 Score = 39.7 bits (92), Expect = 0.35, Method: Composition-based stats. Identities = 26/154 (16%), Positives = 52/154 (33%), Gaps = 24/154 (15%) Query: 44 LVHSAIEQAVRLIDSW--PSWPSRVVILVGPSGSGKSCLANIWSDKSR------------ 89 + + E A + +D + + P + VI+ G G GKS L K + Sbjct: 2 FISTFNEVAFKALDRFSMENGP-QTVIIYGDDGVGKSELLKSLYHKMQNEPYRTIYYQAE 60 Query: 90 ------STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND---TQLFHIINSIHQYDSSL 140 + S + +L+D+ L +LF+ +SI Sbjct: 61 KFSREFAYTLSAGRIKAFRNKVRKADLFILDDLHKLTGKQRTIEELFYTYDSIILQGGKF 120 Query: 141 LMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 ++ +S+ SRL ++ + + P+ Sbjct: 121 AISCSGLHLSFAYLGERFASRLLSSVSIPVFQPE 154 >gi|297297860|ref|XP_001082028.2| PREDICTED: 26S protease regulatory subunit S10B-like [Macaca mulatta] Length = 409 Score = 39.7 bits (92), Expect = 0.35, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + ++ S+ I ++ E Sbjct: 186 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 237 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 238 ------MFNYARDHQ 246 >gi|282162727|ref|YP_003355112.1| cell division control protein 48 [Methanocella paludicola SANAE] gi|282155041|dbj|BAI60129.1| cell division control protein 48 [Methanocella paludicola SANAE] Length = 760 Score = 39.7 bits (92), Expect = 0.35, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 20/34 (58%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 V+L GP G+GK+ LA +++S++ + L Sbjct: 522 VLLYGPPGTGKTLLAKAIANESQANFITAKGSDL 555 >gi|302916237|ref|XP_003051929.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256732868|gb|EEU46216.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 808 Score = 39.7 bits (92), Expect = 0.35, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 31/50 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S+ST FS A SL S + + ++ Sbjct: 552 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTSKYLGESEKLV 601 >gi|170590440|ref|XP_001899980.1| Probable 26S protease regulatory subunit 7 [Brugia malayi] gi|158592612|gb|EDP31210.1| Probable 26S protease regulatory subunit 7, putative [Brugia malayi] Length = 435 Score = 39.7 bits (92), Expect = 0.35, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 43/144 (29%), Gaps = 45/144 (31%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109 P + V+L GP G+GK+ A ++++ + I L + Sbjct: 210 PPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARSK 269 Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147 + ++ID + + +IN + + + +LM Sbjct: 270 KACLIFFDEIDAVGGARFDDGMGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 329 Query: 148 ------PVSW----GVCLPDLCSR 161 P LPDL R Sbjct: 330 DPALVRPGRLDRKIEFALPDLSGR 353 >gi|145334803|ref|NP_001078747.1| ATP binding / nucleoside-triphosphatase/ nucleotide binding [Arabidopsis thaliana] gi|332008889|gb|AED96272.1| putative ATP binding protein [Arabidopsis thaliana] Length = 829 Score = 39.7 bits (92), Expect = 0.35, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 21/32 (65%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P R ++L GP G+GK+ LA ++++ ++ + Sbjct: 550 PCRGILLFGPPGTGKTMLAKAIANEAGASFIN 581 >gi|148225468|ref|NP_001090469.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Xenopus laevis] gi|67677964|gb|AAH97594.1| MGC114813 protein [Xenopus laevis] Length = 389 Score = 39.7 bits (92), Expect = 0.35, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + ++ S+ I ++ E Sbjct: 166 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 217 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 218 ------MFNYARDHQ 226 >gi|19113998|ref|NP_593086.1| AAA family ATPase Vps4 (predicted) [Schizosaccharomyces pombe 972h-] gi|1173445|sp|Q09803|VPS4_SCHPO RecName: Full=Suppressor protein of bem1/bed5 double mutants gi|496311|gb|AAA35347.1| supressor protein [Schizosaccharomyces pombe] gi|1019404|emb|CAA91171.1| AAA family ATPase Vps4 (predicted) [Schizosaccharomyces pombe] Length = 432 Score = 39.7 bits (92), Expect = 0.35, Method: Composition-based stats. Identities = 14/32 (43%), Positives = 20/32 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P ++L GP G+GKS LA + ++ ST FS Sbjct: 161 PWSGILLYGPPGTGKSYLAKAVATEAGSTFFS 192 >gi|328885709|emb|CCA58948.1| IstB ATP-binding protein [Streptomyces venezuelae ATCC 10712] Length = 250 Score = 39.7 bits (92), Expect = 0.35, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 47/145 (32%), Gaps = 34/145 (23%) Query: 64 SRVVILVGPSGSGKSCLANI-------------WSDKSRSTRF------SNIAKSLDSIL 104 ++L G G+GK+ A W + + + + + Sbjct: 101 GPSLLLWGNVGTGKTHQAYAAIRALTASGCGVSWHATTAADLYGDTRPQAGVDLEHQLRR 160 Query: 105 IDTRKPVLLEDIDLL---DFNDTQLFHIINSIHQYDSSLLMTARTFPVS------WGVCL 155 I +LL+D+ + + LF ++N Q + T PV L Sbjct: 161 IVRVPLLLLDDVGAAKTSAWTEEVLFRLVNWRCQNQLPTIFTTNLPPVRDLADSPSQPVL 220 Query: 156 PDLC-----SRLKA-ATVVKISLPD 174 DL SR+ T V+ + PD Sbjct: 221 RDLVGDRVLSRMSGMCTPVRFTGPD 245 >gi|319746115|gb|EFV98389.1| AAA family ATPase [Streptococcus agalactiae ATCC 13813] Length = 422 Score = 39.7 bits (92), Expect = 0.35, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 64/166 (38%), Gaps = 22/166 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKS-------RSTR--FSNIAKSLDSILIDTRKPVLLEDID 117 +IL GP G GK+ +A+ + + +T + + + +LL++I Sbjct: 42 MILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIH 101 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 LD + + + +++ A T + V P + SR + ++ ++ Sbjct: 102 RLDKTKQDFLLP---LLENGNIIMIGATTENPFFSVT-PAIRSR---VQIFELEPLSNED 154 Query: 178 LEKVIVKMFAD--RQ----IFIDKKLAAYIVQRMERSLVFAEKLVD 217 ++K I +D R + ID + +IV L A +D Sbjct: 155 IKKAIQLAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLD 200 >gi|319949375|ref|ZP_08023444.1| ATP-dependent protease FtsH [Dietzia cinnamea P4] gi|319436958|gb|EFV92009.1| ATP-dependent protease FtsH [Dietzia cinnamea P4] Length = 738 Score = 39.7 bits (92), Expect = 0.35, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 64/206 (31%), Gaps = 49/206 (23%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110 R V+L GP G+GK+ LA + ++ +S + + Sbjct: 204 RGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEKAKQNAP 263 Query: 111 --VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGV 153 V +++ID + D + L + ++ + +L+ A P Sbjct: 264 CIVFVDEIDAVGRHRGSGTGGGHDEREQTLNQLLVEMDGFDDRSTVILIAATNRPDVLDP 323 Query: 154 CL--------------PDLCSR--LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L PDL R + A V L D + + + + L Sbjct: 324 ALLRPGRFDRQVPVTNPDLKGREAILAVHSVGKPLAADVDMTSLARRTIGMSGADLANVL 383 Query: 198 --AAYIVQRMERSLVFAEKLVDKMDN 221 A + R+ R + E L + D Sbjct: 384 NEGALLAARLGRDEIDIEILEEATDR 409 >gi|321261730|ref|XP_003195584.1| ATPase [Cryptococcus gattii WM276] gi|317462058|gb|ADV23797.1| ATPase, putative [Cryptococcus gattii WM276] Length = 439 Score = 39.7 bits (92), Expect = 0.35, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 24/38 (63%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P R ++L GP G+GKS LA + +++ST FS + L Sbjct: 165 PWRGILLYGPPGTGKSYLAKAVATEAKSTFFSVSSSDL 202 >gi|303241603|ref|ZP_07328102.1| Holliday junction DNA helicase RuvB [Acetivibrio cellulolyticus CD2] gi|302590823|gb|EFL60572.1| Holliday junction DNA helicase RuvB [Acetivibrio cellulolyticus CD2] Length = 330 Score = 39.7 bits (92), Expect = 0.35, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 3/70 (4%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G GK+ LA+I + + +++ L + D+L ++ Sbjct: 55 VLLYGPPGLGKTTLASIIASELGVNIRITSGPAIEKPGDLAAILTNLGNYDVLFIDEI-- 112 Query: 127 FHIINSIHQY 136 H +N + Sbjct: 113 -HRLNRSVEE 121 >gi|297803328|ref|XP_002869548.1| hypothetical protein ARALYDRAFT_492017 [Arabidopsis lyrata subsp. lyrata] gi|297315384|gb|EFH45807.1| hypothetical protein ARALYDRAFT_492017 [Arabidopsis lyrata subsp. lyrata] Length = 398 Score = 39.7 bits (92), Expect = 0.35, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 19/32 (59%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + V+L GP G+GK+ LA + +S + + Sbjct: 118 PQKGVLLYGPPGTGKTMLAKAIAKESGAVFIN 149 >gi|241955559|ref|XP_002420500.1| ATPase of the AAA family, putative; ribosome biogenesis ATPase, putative; ribosome export protein, putative [Candida dubliniensis CD36] gi|223643842|emb|CAX41579.1| ATPase of the AAA family, putative [Candida dubliniensis CD36] Length = 830 Score = 39.7 bits (92), Expect = 0.35, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P+ V++ GP G GK+ LA +++SR+ S Sbjct: 559 PAGVLM-WGPPGCGKTLLAKAVANESRANFIS 589 >gi|198413872|ref|XP_002128188.1| PREDICTED: similar to proteasome (prosome, macropain) 26S subunit, ATPase 2 [Ciona intestinalis] Length = 433 Score = 39.7 bits (92), Expect = 0.35, Method: Composition-based stats. Identities = 29/215 (13%), Positives = 62/215 (28%), Gaps = 66/215 (30%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109 P + ++L GP G+GK+ A ++++ + I L + Sbjct: 208 PPKGILLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 267 Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147 + ++ID + + +IN + + + +LM Sbjct: 268 KACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 327 Query: 148 -PVSW---------GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P LPDL R K + KI R + +++ + Sbjct: 328 DPALMRPGRMDRKVEFGLPDLEGRTK---IFKIHA----------------RSMSVERDI 368 Query: 198 AAYIVQR-MERSLVF-AEKLVDKMDNLALSRGMGI 230 ++ R S + + A+ + Sbjct: 369 RYELLARLCPNSTGAEIRSVCTEAGMYAIRARRKV 403 >gi|51493662|gb|AAU04844.1| netropsin resistance protein subunit 1 [Streptomyces netropsis] Length = 618 Score = 39.7 bits (92), Expect = 0.35, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 16/64 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P V LVGP+GSGKS L ++ L+ + VL++ +D +++ Sbjct: 389 PGATVALVGPTGSGKSTLLHL----------------LNHTYAPDQGRVLIDGVDAAEWD 432 Query: 123 DTQL 126 L Sbjct: 433 QASL 436 >gi|1526426|dbj|BAA11338.1| proteasome subunit p42 [Homo sapiens] Length = 389 Score = 39.7 bits (92), Expect = 0.35, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + ++ S+ I ++ E Sbjct: 166 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 217 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 218 ------MFNYARDHQ 226 >gi|330833626|ref|YP_004402451.1| multidrug ABC transporter ATP-binding protein [Streptococcus suis ST3] gi|329307849|gb|AEB82265.1| multidrug ABC transporter, ATP-binding protein [Streptococcus suis ST3] Length = 545 Score = 39.7 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 73/193 (37%), Gaps = 29/193 (15%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123 + +++G SGSGKS LA I +++++ +D + ++D + Sbjct: 362 GKKYLILGESGSGKSSLALI---LTKNSQLQAGDIYVDKTSLSDLSYQAIQDKIAYLPQE 418 Query: 124 TQLFH---IINSIHQYDSSLLMTARTFPV---SWGVCLPDLCSRLKAATVVKISLPDDDF 177 LFH + N R P + + +L SR + + + DD Sbjct: 419 GSLFHDTVLYNLTM---------GREIPEDRLMFLIKTMNLDSRFPSYASLSEEISDDSG 469 Query: 178 LEKVI-VKMFADRQIFIDKKLAAYIVQRMERSLVFA-EKLVDKMDNL--ALSRGM--GIT 231 L ++ R + DK + ++ ++ SL ++ ++N +L+ I+ Sbjct: 470 LSGGQKQRLLLIRALLQDKDI---LL--LDESLSALDQETYAVIENYLTSLADKTLIHIS 524 Query: 232 RSLAAEVLKETQQ 244 ++ EVL Sbjct: 525 HRMSEEVLSRYDG 537 >gi|328860463|gb|EGG09569.1| hypothetical protein MELLADRAFT_47487 [Melampsora larici-populina 98AG31] Length = 440 Score = 39.7 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 24/38 (63%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P R ++L GP G+GKS LA + +++ST FS + L Sbjct: 165 PWRGILLYGPPGTGKSYLAKAVATEAKSTFFSVSSSDL 202 >gi|330470412|ref|YP_004408155.1| adenosinetriphosphatase [Verrucosispora maris AB-18-032] gi|328813383|gb|AEB47555.1| adenosinetriphosphatase [Verrucosispora maris AB-18-032] Length = 777 Score = 39.7 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 37/191 (19%), Positives = 68/191 (35%), Gaps = 37/191 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILIDTRKP 110 V++ GP+GSGKS L + + + + A + ++ D Sbjct: 300 VLVSGPAGSGKSALVRAVAAQVGARVHALWAPEIAALSNSSAAARLRATTAEVIADGPAV 359 Query: 111 VLLEDIDLLDFNDT-----QLF-HIINSIHQYDSSLLMTARTFPVSWGVCL-PDLCSRLK 163 +L+ D++ L DT +F + I Q ++++ T PDL S Sbjct: 360 LLVTDVEALAPADTPGPVATVFRQCLAQIVQAGAAVVCTTSRPEALDPAMRAPDLLS--- 416 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + + LPD + + + R + + + R++ V D A Sbjct: 417 --LRIDVPLPDAALRREQLTVL--TRPVPLADDV------RLDEVAGRTPGFVAA-DLAA 465 Query: 224 LSRGMGITRSL 234 L R GI +L Sbjct: 466 LVREAGIRAAL 476 Score = 37.8 bits (87), Expect = 1.4, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 14/80 (17%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P R V+L GP G GK+ L + R+ S L S + + + E Sbjct: 549 PPRGVLLYGPPGCGKTYLVTALAGSGRANVLSVKGAELLSKWVGESERAVRE-------- 600 Query: 123 DTQLFHIINSIHQYDSSLLM 142 + + +L+ Sbjct: 601 ------LFRRAQEAAPTLVF 614 >gi|326485261|gb|EGE09271.1| sister chromatid cohesion factor [Trichophyton equinum CBS 127.97] Length = 908 Score = 39.7 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 13/83 (15%) Query: 29 FFSFP--RCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSD 86 FP + +D+ + DS ++++L GP G GK+ LA+I + Sbjct: 189 PIVFPGLAKPKVKKDNF----SN-------DSEERAHRKILLLTGPPGLGKTTLAHICAK 237 Query: 87 KSRSTRFSNIAKSLDSILIDTRK 109 + A S + T + Sbjct: 238 QVGYEVLEINASDERSRTVVTGR 260 >gi|322701840|gb|EFY93588.1| intermembrane space AAA protease IAP-1 [Metarhizium acridum CQMa 102] Length = 740 Score = 39.7 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 60/195 (30%), Gaps = 63/195 (32%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTR----------------KP 110 V+LVGP G+GK+ LA + ++ F D I + Sbjct: 293 VLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEIFVGVGAKRVRELFAAAKAKSPAI 352 Query: 111 VLLEDIDLLDF-----NDT-------QLFHIINSIHQYDSSLLMTARTFPVSW------- 151 + ++++D + + QL ++ Q ++M A P Sbjct: 353 IFIDELDAIGGKRNPRDQAHAKQTLNQLLTELDGFDQDTKIIIMGATNLPNLLDKALTRP 412 Query: 152 -------GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQ 203 V LPD+ RL I+K A + I + I Sbjct: 413 GRFDRHINVDLPDVRGRL------------------AILKHHAKK-IKAAPDVDLDAIAA 453 Query: 204 RME-RSLVFAEKLVD 217 R RS E +++ Sbjct: 454 RSPGRSGAELENMLN 468 >gi|298241820|ref|ZP_06965627.1| AAA ATPase central domain protein [Ktedonobacter racemifer DSM 44963] gi|297554874|gb|EFH88738.1| AAA ATPase central domain protein [Ktedonobacter racemifer DSM 44963] Length = 626 Score = 39.7 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 33/214 (15%), Positives = 64/214 (29%), Gaps = 50/214 (23%) Query: 51 QAVRLIDSWPSWPSRVVI---------------LVGPSGSGKSCLANIWSDKSRSTRF-- 93 A+ +D SW +I LVGP G+GK+ + + Sbjct: 328 AALGGMDHLTSWARSELIEPLTRGLDDVPKGVLLVGPPGTGKTYFVRALAKEVGFNAVML 387 Query: 94 --------------SNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ------LFHIINSI 133 + + + + T V +++D D + ++ N + Sbjct: 388 RTENILSKYVGESENKLKRFFEFARALTPVLVFFDELDQSDMSSRGSESNPVARNLFNQM 447 Query: 134 HQ-------YDSSLLMTARTFPVSWGVCLPDLC-SRLKAATVVKISLPDDDFLEKVIVKM 185 Q + A P L L R+ A V + P+++ +++ Sbjct: 448 LQFMSDETLRGKMVAFFASNRPDLIDQAL--LRFGRMDAVIPVLL--PNEEARARIVRAQ 503 Query: 186 FADRQIFIDKKLAAYIVQRM-ERSLVFAEKLVDK 218 + I I + I R + S +V K Sbjct: 504 AKGQAIAITNEAVTIIATRSNDYSAADIAAVVAK 537 >gi|261417027|ref|YP_003250710.1| Holliday junction DNA helicase RuvB [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373483|gb|ACX76228.1| Holliday junction DNA helicase RuvB [Fibrobacter succinogenes subsp. succinogenes S85] gi|302325461|gb|ADL24662.1| Holliday junction DNA helicase RuvB [Fibrobacter succinogenes subsp. succinogenes S85] Length = 345 Score = 39.7 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 27/173 (15%), Positives = 64/173 (36%), Gaps = 28/173 (16%) Query: 70 VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHI 129 GP G GK+ L++I + + L+ L++ D+L ++ H Sbjct: 61 AGPPGLGKTTLSSIIAKEMGVNIHITSGPVLEKASDLAGLLTSLQENDILFIDEI---HR 117 Query: 130 INSIHQ-------YDSSLLMTARTFPVSWGVCLPDL----------CS-------RLKAA 165 +N + + D L + + P + V LP L S R + Sbjct: 118 LNRVVEEYLYPAMEDFRLDIMLDSGPAARSVNLP-LKHFTLVGATTRSGLLTGPLRDRFG 176 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDK 218 ++ L ++ + K++++ + + ++ A + R + A +++ + Sbjct: 177 LQYRLELYNEKDIVKILMRSARILGVELSEEAAKILGGRCRGTPRVANRVLRR 229 >gi|225627677|ref|ZP_03785714.1| recombination factor protein RarA [Brucella ceti str. Cudo] gi|225617682|gb|EEH14727.1| recombination factor protein RarA [Brucella ceti str. Cudo] gi|326409226|gb|ADZ66291.1| recombination factor protein RarA [Brucella melitensis M28] Length = 457 Score = 39.7 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 59/181 (32%), Gaps = 28/181 (15%) Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDID 117 S ++ GP G+GK+ +A + + ++ + S I + + Sbjct: 69 ASGSLGSMVFWGPPGTGKTTVARLLAGETDLAFEQISAIFSGVADLKRVFEAA----RAR 124 Query: 118 LLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLK 163 + T LF H N + + +L+ T L SR Sbjct: 125 RMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVILIGATTENPSFELNAA---LLSR-- 179 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 A V+ D + + ++ + + +D + A +++ + A L +++ Sbjct: 180 -ARVLTFHPHDSESIATLLKRAEEQEGQALPLDDEARASLIRMADGDGRAALTLAEEVWR 238 Query: 222 L 222 Sbjct: 239 A 239 >gi|255565587|ref|XP_002523783.1| Vacuolar protein sorting-associated protein VPS4, putative [Ricinus communis] gi|223536871|gb|EEF38509.1| Vacuolar protein sorting-associated protein VPS4, putative [Ricinus communis] Length = 431 Score = 39.7 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 15/32 (46%), Positives = 20/32 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P R +L GP G+GKS LA + ++ ST FS Sbjct: 160 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFS 191 >gi|20090664|ref|NP_616739.1| hypothetical protein MA1813 [Methanosarcina acetivorans C2A] gi|19915711|gb|AAM05219.1| hypothetical protein MA_1813 [Methanosarcina acetivorans C2A] Length = 764 Score = 39.7 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 18/34 (52%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 V+L GP G+GK+ LA + +S + + L Sbjct: 526 VLLYGPPGTGKTLLAKAIAHESDANFITAKGSDL 559 Score = 37.4 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 44/117 (37%), Gaps = 28/117 (23%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILIDTRKP 110 V+L GP G+GK+ LA +++S + S I + + + Sbjct: 253 VLLQGPPGTGKTMLAKAVANESDAYFISINGPEIMSKYYGESERAIREIFEDAEKNAPAI 312 Query: 111 VLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 + L++ID + QL +++ + + +++ A P + + L Sbjct: 313 IFLDEIDSIAPKRAEVTGEVERRVVAQLLSLMDGLKARKNVIVIGATNRPEALDIAL 369 >gi|68637431|emb|CAF21818.1| recombinase A [Weissella minor] Length = 190 Score = 39.7 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 31/61 (50%), Gaps = 2/61 (3%) Query: 64 SRVVILVGPSGSGKSCLA-NIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 R++ + GP SGK+ LA + ++ ++ + ++I ++ + + + D+D L + Sbjct: 24 GRIMEIYGPESSGKTTLALHAAAEAQKAGGIVAYIDAENAIDVEYARALGV-DVDELLLS 82 Query: 123 D 123 Sbjct: 83 Q 83 >gi|17563248|ref|NP_506005.1| proteasome Regulatory Particle, ATPase-like family member (rpt-1) [Caenorhabditis elegans] gi|2492520|sp|Q18787|PRS7_CAEEL RecName: Full=26S protease regulatory subunit 7; AltName: Full=26S proteasome AAA-ATPase subunit rpt-1; AltName: Full=Proteasome 26S subunit ATPase 2 gi|3875191|emb|CAB01414.1| C. elegans protein C52E4.4, confirmed by transcript evidence [Caenorhabditis elegans] Length = 435 Score = 39.7 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 43/144 (29%), Gaps = 45/144 (31%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109 P + V+L GP G+GK+ A ++++ + I L + Sbjct: 210 PPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 269 Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147 + ++ID + + +IN + + + +LM Sbjct: 270 KACLIFFDEIDAVGGARFDDGQGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 329 Query: 148 ------PVSW----GVCLPDLCSR 161 P LPDL R Sbjct: 330 DPALMRPGRLDRKVEFALPDLAGR 353 >gi|324506772|gb|ADY42884.1| 26S protease regulatory subunit 10B [Ascaris suum] Length = 449 Score = 39.7 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 26/75 (34%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + ++ ++ I ++ E Sbjct: 226 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIRE-------- 277 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 278 ------MFNYARDHQ 286 >gi|311104419|ref|YP_003977272.1| magnesium chelatase subunit ChlI family protein 1 [Achromobacter xylosoxidans A8] gi|310759108|gb|ADP14557.1| magnesium chelatase, subunit ChlI family protein 1 [Achromobacter xylosoxidans A8] Length = 446 Score = 39.7 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 33/179 (18%), Positives = 61/179 (34%), Gaps = 20/179 (11%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +I GP G GK+ LA + +D + + A + + D R V + + T L Sbjct: 55 MIFWGPPGVGKTTLARLMADGFDAQFIAISA--VLGGVKDIRDAVTVAQVAQGQGRRTIL 112 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSR-----LKAATVVK 169 F H N + + A T S+ V L SR L++ T + Sbjct: 113 FVDEVHRFNKAQQDAFLPYVESGLFTFIGATTENPSFEVNSA-LLSRARVYVLQSLTAEE 171 Query: 170 ISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGM 228 + D ++ + + +I +D + + V+ + A + G Sbjct: 172 LQQLVDRAVQALNDGLEEGERIHVDADAREQLAAWADGDARRLISAVEVVAESAQAAGR 230 >gi|308481279|ref|XP_003102845.1| hypothetical protein CRE_29903 [Caenorhabditis remanei] gi|308260931|gb|EFP04884.1| hypothetical protein CRE_29903 [Caenorhabditis remanei] Length = 352 Score = 39.7 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 16/32 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P R ++L GP G GK+ LA + + + Sbjct: 116 PPRGILLYGPPGCGKTLLAKAVARAAGCRFIN 147 >gi|308451925|ref|XP_003088853.1| hypothetical protein CRE_14423 [Caenorhabditis remanei] gi|308245130|gb|EFO89082.1| hypothetical protein CRE_14423 [Caenorhabditis remanei] Length = 364 Score = 39.7 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 16/32 (50%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P R ++L GP G GK+ LA + + + Sbjct: 116 PPRGILLYGPPGCGKTLLAKAVARAAGCRFIN 147 >gi|308186247|ref|YP_003930378.1| hypothetical protein Pvag_0727 [Pantoea vagans C9-1] gi|308056757|gb|ADO08929.1| Uncharacterized protein [Pantoea vagans C9-1] Length = 447 Score = 39.7 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 40/198 (20%), Positives = 66/198 (33%), Gaps = 36/198 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G+GK+ LA I + + R S + + I + + T Sbjct: 53 MILWGPPGTGKTTLAEIIAHYGNADVERISAVTSGVKEIREAIERA----RQNKHAGRRT 108 Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N Q D ++ T L SR A V + Sbjct: 109 ILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSA---LLSR---ARVYLL 162 Query: 171 SLPDDDFLEKVIVKMFAD--RQIFIDKKLAAYIVQRMERSL--VFAEKLVDKMDNLA--- 223 + +E+V+ + D R + +RM L A + ++ ++ +A Sbjct: 163 KSLTAEDIEQVLDQAMQDKARGYGDSDIVLPDNTRRMIAELVNGDARRALNTLEMMADMA 222 Query: 224 ---LSRGMGITRSLAAEV 238 S +T L EV Sbjct: 223 EITASGQRELTPQLLNEV 240 >gi|227328282|ref|ZP_03832306.1| DNA-binding protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 374 Score = 39.7 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 3/96 (3%) Query: 32 FPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRST 91 P + + D+ L + L+ S ++L GP G GK+ LA+ + + Sbjct: 94 LPAAVQENVDEFLSFISKA---HLLSEAGVGISPSMMLYGPPGCGKTQLAHHIAARLELP 150 Query: 92 RFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLF 127 + +L S + + L D LF Sbjct: 151 LITARCDTLISSFLGSTAKNLRSLFDHAASRPCVLF 186 >gi|224031823|gb|ACN34987.1| unknown [Zea mays] Length = 391 Score = 39.7 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 19/32 (59%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + V+L GP G+GK+ LA + +S + + Sbjct: 119 PQKGVLLYGPPGTGKTMLAKAIARESGAVFIN 150 >gi|224105063|ref|XP_002313671.1| predicted protein [Populus trichocarpa] gi|222850079|gb|EEE87626.1| predicted protein [Populus trichocarpa] Length = 431 Score = 39.7 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 22/38 (57%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P R +L GP G+GKS LA + ++ ST FS + L Sbjct: 160 PWRAFLLYGPPGTGKSYLAKAVATEAESTFFSVSSSDL 197 >gi|297201308|ref|ZP_06918705.1| ATP-binding protein [Streptomyces sviceus ATCC 29083] gi|197712831|gb|EDY56865.1| ATP-binding protein [Streptomyces sviceus ATCC 29083] Length = 491 Score = 39.7 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 61/199 (30%), Gaps = 42/199 (21%) Query: 7 DYSFFVPDKQKNDQPKNKEEQLF--FSFPRCLGISRD-DLLVHSAIEQ-------AVRLI 56 + VPD ++ + QL P + DLL+ A+ + Sbjct: 123 GWDITVPDPREVSWRRT---QLTGELPLPAKDTNGKGIDLLMRLCNFANAETECLAIAWL 179 Query: 57 --DSWPSWPSRVVILVGPSGSGKSC----LANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110 PS P L GP G+GKS L I S R + + + Sbjct: 180 IGCLGPSVPVPAPFLTGPQGAGKSTGGRMLVRIIEGMSGDLRRAPKDEENLIAAVAAGWV 239 Query: 111 VLLEDIDLLDFN---------------DTQLFHIINSIHQY-DSSLLMTARTFPVSWGVC 154 L+++ + + LF + LL+T + GV Sbjct: 240 TALDNLSHMTPDLSDAMCCIVTGAENVKRALFTDGDVFRVGYRRPLLLTG----IDVGVI 295 Query: 155 LPDLCSRLKAATVVKISLP 173 PDL RL +++ P Sbjct: 296 RPDLAERL---LPLRLERP 311 >gi|195585855|ref|XP_002082694.1| GD25099 [Drosophila simulans] gi|194194703|gb|EDX08279.1| GD25099 [Drosophila simulans] Length = 603 Score = 39.7 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 22/43 (51%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109 V+LVGP G+GK+ LA + +++ F D +L+ Sbjct: 251 VLLVGPPGTGKTLLARAVAGEAKVPFFHAAGPEFDEVLVGQGA 293 >gi|218248318|ref|YP_002373689.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801] gi|257060355|ref|YP_003138243.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802] gi|218168796|gb|ACK67533.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801] gi|256590521|gb|ACV01408.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802] Length = 673 Score = 39.7 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 37/218 (16%), Positives = 76/218 (34%), Gaps = 54/218 (24%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ T FS A + + T Sbjct: 246 VLLVGPPGTGKTLLAKAVAGEAGVTFFSISASEFVELFVGTGAARVRDLFEQAKKQAPCI 305 Query: 111 VLLEDIDLLDF------------ND-----TQLFHIINSIHQYDSSL-LMTARTFPVSWG 152 + ++++D + ++ QL ++ + D+++ ++ A P + Sbjct: 306 IFIDELDAIGKSRSGGNSLSGSNDEREQTLNQLLTEMDGFNAGDATVIVLAATNRPETLD 365 Query: 153 VCL--------------PDLCSRLKAATVV--KISLPDDDFLEKVIVKMFADRQIFIDKK 196 L PDL RL + KI L + L+ + + + Sbjct: 366 PALLRPGRFDRQVLVDRPDLAGRLAILEIYVKKIQLGEGVNLKDLATQTPGFAGADLANL 425 Query: 197 L--AAYIVQRMERSLVFAEKLVDKMDN--LALSRGMGI 230 + AA + R +R V + ++ L + + Sbjct: 426 VNEAALLAARNQRDYVTQRDFKEAIERVIAGLEKKSRV 463 >gi|118396729|ref|XP_001030702.1| ATPase, AAA family protein [Tetrahymena thermophila] gi|89285014|gb|EAR83039.1| ATPase, AAA family protein [Tetrahymena thermophila SB210] Length = 354 Score = 39.7 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 16/42 (38%), Positives = 27/42 (64%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL 104 P R ++L GP G+GK+ +A + +S +T ++ A +DSIL Sbjct: 145 PPRGILLFGPPGNGKTLIAKAVATESNATFYNISANEIDSIL 186 >gi|45552965|ref|NP_996009.1| smallminded, isoform B [Drosophila melanogaster] gi|45446020|gb|AAS65065.1| smallminded, isoform B [Drosophila melanogaster] Length = 850 Score = 39.7 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 12/25 (48%), Positives = 16/25 (64%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDK 87 PSR ++L GP G GK+ LA S + Sbjct: 189 PSRGLLLHGPPGCGKTFLARAISGQ 213 Score = 39.4 bits (91), Expect = 0.51, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 PS V+ L GP G GK+ LA ++++ S L ++ + + + Sbjct: 602 PSGVL-LCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESERAV 650 >gi|21226406|ref|NP_632328.1| AAA ATPase family protein [Methanosarcina mazei Go1] gi|20904664|gb|AAM30000.1| AAA family ATPase [Methanosarcina mazei Go1] Length = 372 Score = 39.7 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 12/85 (14%), Positives = 33/85 (38%), Gaps = 22/85 (25%) Query: 57 DSWPSWPSRVVILVGPSGSGKSCLANIWSDKS-------------------RSTRFSNIA 97 + + W R ++ GPSG+GK+ LA ++K+ + + + Sbjct: 146 ERFGKWAPRNILFFGPSGTGKTMLAKALANKTDVPLIPVKATQLIGEYVGDGARQIHQLY 205 Query: 98 KSLDSILIDTRKPVLLEDIDLLDFN 122 + + + ++++D + + Sbjct: 206 DRAEEM---APCIIFIDELDAIALD 227 >gi|27754103|ref|NP_080235.2| 26S protease regulatory subunit 10B [Mus musculus] gi|126290027|ref|XP_001365047.1| PREDICTED: similar to conserved ATPase domain protein 44 [Monodelphis domestica] gi|194034456|ref|XP_001928782.1| PREDICTED: 26S protease regulatory subunit 10B [Sus scrofa] gi|51702772|sp|P62333|PRS10_HUMAN RecName: Full=26S protease regulatory subunit 10B; AltName: Full=26S proteasome AAA-ATPase subunit RPT4; AltName: Full=Proteasome 26S subunit ATPase 6; AltName: Full=Proteasome subunit p42 gi|55977306|sp|P62334|PRS10_MOUSE RecName: Full=26S protease regulatory subunit 10B; AltName: Full=26S proteasome AAA-ATPase subunit RPT4; AltName: Full=Proteasome 26S subunit ATPase 6; AltName: Full=Proteasome subunit p42 gi|59800155|sp|P62335|PRS10_SPETR RecName: Full=26S protease regulatory subunit 10B; AltName: Full=26S proteasome AAA-ATPase subunit RPT4; AltName: Full=Conserved ATPase domain protein 44; Short=CADp44; AltName: Full=Proteasome 26S subunit ATPase 6; AltName: Full=Proteasome subunit p42 gi|1045497|gb|AAB40354.1| conserved ATPase domain protein 44 [Spermophilus tridecemlineatus] gi|2213932|gb|AAB61616.1| 26S proteasome regulatory subunit [Homo sapiens] gi|12848757|dbj|BAB28078.1| unnamed protein product [Mus musculus] gi|13529266|gb|AAH05390.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Homo sapiens] gi|30582525|gb|AAP35489.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Homo sapiens] gi|48145535|emb|CAG32990.1| PSMC6 [Homo sapiens] gi|61361236|gb|AAX42017.1| proteasome 26S subunit 6 [synthetic construct] gi|61361244|gb|AAX42018.1| proteasome 26S subunit 6 [synthetic construct] gi|74185083|dbj|BAE39144.1| unnamed protein product [Mus musculus] gi|74194908|dbj|BAE26034.1| unnamed protein product [Mus musculus] gi|109733764|gb|AAI16753.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Mus musculus] gi|111601154|gb|AAI19169.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Mus musculus] gi|119586049|gb|EAW65645.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Homo sapiens] gi|123994057|gb|ABM84630.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [synthetic construct] gi|148688745|gb|EDL20692.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6, isoform CRA_b [Mus musculus] gi|189053915|dbj|BAG36422.1| unnamed protein product [Homo sapiens] gi|208967156|dbj|BAG73592.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [synthetic construct] gi|296483635|gb|DAA25750.1| 26S protease regulatory subunit S10B [Bos taurus] Length = 389 Score = 39.7 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + ++ S+ I ++ E Sbjct: 166 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 217 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 218 ------MFNYARDHQ 226 >gi|148547066|ref|YP_001267168.1| recombination factor protein RarA [Pseudomonas putida F1] gi|148511124|gb|ABQ77984.1| Recombination protein MgsA [Pseudomonas putida F1] Length = 441 Score = 39.7 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 34/210 (16%), Positives = 73/210 (34%), Gaps = 32/210 (15%) Query: 57 DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 ++ +I GP G GK+ LA + + + F ++ L + + + + Sbjct: 40 EALEQGALHSMIFWGPPGVGKTTLARLLAQFCDAH-FETVSAVLAGVKEIRQAVEVAKQQ 98 Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162 T LF H N Q D +LL T L SR Sbjct: 99 AGQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTLLFIGATTENPSFELNNA---LLSR- 154 Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLV 216 A V + D+ L K++ + + R + + ++ + +++ Sbjct: 155 --ARVYVLKSLDEAALRKLVNRALTEARGLGKRNLRVGDDAFKMLMAAAD---GDGRRML 209 Query: 217 DKMDNLA-LSR-GMGITRSLAAEVLKETQQ 244 + ++N + L+ G I + +L ++++ Sbjct: 210 NFLENASDLAEDGSEIDVEMLQSLLGDSRR 239 >gi|326501604|dbj|BAK02591.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 986 Score = 39.7 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 13/40 (32%), Positives = 22/40 (55%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P + V+L GP G+GK+ LA + ++ + S +L S Sbjct: 729 PCKGVLLFGPPGTGKTLLAKALATEAGANFISITGSTLTS 768 >gi|295395336|ref|ZP_06805537.1| AAA-family ATPase [Brevibacterium mcbrellneri ATCC 49030] gi|294971795|gb|EFG47669.1| AAA-family ATPase [Brevibacterium mcbrellneri ATCC 49030] Length = 329 Score = 39.7 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 59/156 (37%), Gaps = 33/156 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF---------------SNIAKSLDSILIDT 107 P++ ++L GP G+GK+ A + + + F + + + + +T Sbjct: 120 PAQRLLLTGPPGTGKTTTAQVIAAELNLPLFTVRLDSMITKFMGATAAKLRLIFDAIAET 179 Query: 108 RKPVLLEDIDLLDFNDTQ---------LFHIINSIHQYDS--SLLMTARTFPVSWGVCLP 156 R +++D L + + + + D SL++TA P L Sbjct: 180 RGVYFFDEVDALAGDRAAANDVGEIRRVLNSFLQFLEEDISDSLIITATNHPQLLDKAL- 238 Query: 157 DLCSRLKAA-TVVKISLPDDDFLEKVIVKMFADRQI 191 + T ++ LPDD+ ++ VI A QI Sbjct: 239 -----FRRVDTTLEFDLPDDEGIKSVIKNRLATFQI 269 >gi|253687444|ref|YP_003016634.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259491264|sp|C6DB56|CLPX_PECCP RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|251754022|gb|ACT12098.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 424 Score = 39.7 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 48/132 (36%), Gaps = 30/132 (22%) Query: 2 NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55 ++++E+ P ++++ P P + DD ++ Sbjct: 46 DIIREEIKEVAPHRERSALPT----------PHEIRRHLDDYVIGQEQAKKVLAVAVYNH 95 Query: 56 IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107 + S ++L+GP+GSGK+ LA + RF ++ ++ T Sbjct: 96 YKRLRNGDSSNGIELGKSNILLIGPTGSGKTLLAETLA------RFLDVPFTMADATTLT 149 Query: 108 RKPVLLEDIDLL 119 + ED++ + Sbjct: 150 EAGYVGEDVENI 161 >gi|296814720|ref|XP_002847697.1| vacuolar sorting protein 4b [Arthroderma otae CBS 113480] gi|238840722|gb|EEQ30384.1| vacuolar sorting protein 4b [Arthroderma otae CBS 113480] Length = 815 Score = 39.7 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 19/40 (47%), Positives = 27/40 (67%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P+R ++L GP G+GK+ LA + +S+ST FS A SL S Sbjct: 571 PARGMLLFGPPGTGKTMLARAVATESKSTFFSVSASSLAS 610 >gi|229009575|ref|ZP_04166802.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus mycoides DSM 2048] gi|229053912|ref|ZP_04195347.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus AH603] gi|229131073|ref|ZP_04259986.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus BDRD-ST196] gi|229165054|ref|ZP_04292850.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus AH621] gi|228618439|gb|EEK75468.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus AH621] gi|228652410|gb|EEL08334.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus BDRD-ST196] gi|228721453|gb|EEL72973.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus AH603] gi|228751719|gb|EEM01518.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus mycoides DSM 2048] Length = 612 Score = 39.7 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 63/197 (31%), Gaps = 45/197 (22%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ FS + + Sbjct: 177 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 236 Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + + L + ++ + +++ A P L Sbjct: 237 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANEGIIIIAATNRPDILDPAL 296 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211 L+ + + PD + E V+ R +D+ + I R Sbjct: 297 ------LRPGRFDRQITVDRPDVNGREAVLKVHA--RNKPLDENVNLRAIATRTP-GFSG 347 Query: 212 AEKLVDKMDNLALSRGM 228 A L + ++ AL Sbjct: 348 A-DLENLLNEAALVAAR 363 >gi|222423365|dbj|BAH19655.1| AT5G52882 [Arabidopsis thaliana] Length = 829 Score = 39.7 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 21/32 (65%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P R ++L GP G+GK+ LA ++++ ++ + Sbjct: 550 PCRGILLFGPPGTGKTMLAKAIANEAGASFIN 581 >gi|213965130|ref|ZP_03393328.1| Cell division protease FtsH homolog [Corynebacterium amycolatum SK46] gi|213952244|gb|EEB63628.1| Cell division protease FtsH homolog [Corynebacterium amycolatum SK46] Length = 894 Score = 39.7 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 27/199 (13%), Positives = 63/199 (31%), Gaps = 45/199 (22%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110 R V+L GP G+GK+ LA + ++ ++ + + Sbjct: 202 RGVLLYGPPGTGKTLLARAVAGEAGVPFYTISGSDFVEMFVGVGASRVRDLFNQAKENSP 261 Query: 111 --VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGV 153 + +++ID + + L + ++ ++M A P Sbjct: 262 CIIFIDEIDAVGRQRGAGMGGGHDEREQTLNQLLVEMDGFGDRQGVIIMAATNRPDILDP 321 Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM-ERSL 209 L L+ + + PD E ++ ++ + D L + + +R S Sbjct: 322 AL------LRPGRFDRQIPVGAPDLKGREAILKVHARNKPLGPDADLTS-LAKRTAGMSG 374 Query: 210 VFAEKLVDKMDNLALSRGM 228 + + ++ AL Sbjct: 375 ADLQNV---LNEAALLTAR 390 >gi|20091847|ref|NP_617922.1| AAA family ATPase [Methanosarcina acetivorans C2A] gi|19917038|gb|AAM06402.1| ATPase, AAA family [Methanosarcina acetivorans C2A] Length = 372 Score = 39.7 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 16/82 (19%) Query: 57 DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------- 109 + + W R ++ GPSG+GK+ LA ++K+ A L + Sbjct: 146 ERFGKWAPRNILFFGPSGTGKTMLAKALANKTDVPIIPVKATQLIGEYVGDGARQIHQLY 205 Query: 110 ---------PVLLEDIDLLDFN 122 + ++++D + + Sbjct: 206 DRAEEMSPCIIFIDELDAIALD 227 >gi|163938073|ref|YP_001642957.1| ATP-dependent metalloprotease FtsH [Bacillus weihenstephanensis KBAB4] gi|163860270|gb|ABY41329.1| ATP-dependent metalloprotease FtsH [Bacillus weihenstephanensis KBAB4] Length = 633 Score = 39.7 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 63/197 (31%), Gaps = 45/197 (22%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ FS + + Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 257 Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + + L + ++ + +++ A P L Sbjct: 258 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANEGIIIIAATNRPDILDPAL 317 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211 L+ + + PD + E V+ R +D+ + I R Sbjct: 318 ------LRPGRFDRQITVDRPDVNGREAVLKVHA--RNKPLDENVNLRAIATRTP-GFSG 368 Query: 212 AEKLVDKMDNLALSRGM 228 A L + ++ AL Sbjct: 369 A-DLENLLNEAALVAAR 384 >gi|71001884|ref|XP_755623.1| mitochondrial AAA ATPase [Aspergillus fumigatus Af293] gi|66853261|gb|EAL93585.1| mitochondrial AAA ATPase, putative [Aspergillus fumigatus Af293] Length = 952 Score = 39.7 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 17/30 (56%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 ++L GP G+GK+ LA + +S +T Sbjct: 681 PGLLLYGPPGTGKTLLAKAVARESGATVLE 710 >gi|327398236|ref|YP_004339105.1| IstB domain-containing protein ATP-binding protein [Hippea maritima DSM 10411] gi|327180865|gb|AEA33046.1| IstB domain protein ATP-binding protein [Hippea maritima DSM 10411] Length = 205 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 6/68 (8%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L+GPSG+GK+ LA + R ++ + + LE + + D+ + Sbjct: 101 ILLIGPSGTGKTHLAIAIGYAAAQHRIKTKFITMADL------AITLEAAETQNRLDSYI 154 Query: 127 FHIINSIH 134 +INS Sbjct: 155 KKVINSAR 162 >gi|315585800|gb|ADU40181.1| tRNA isopentenyltransferase [Helicobacter pylori 35A] Length = 312 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 15/124 (12%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL-DSILIDTRKPVLLED------ 115 P +++ L+GPSGSGKS L+ + + + FS + S+ I I + KP L E Sbjct: 12 PKKLIALLGPSGSGKSTLSTELAQELDAEIFSLDSLSIYKDINIASAKPSLKERKNIKHY 71 Query: 116 -IDLLDFND---TQLFH--IINSIHQYDSSLLMTARTFPVSWGVCLPDLCS--RLKAATV 167 +D L+ ++ LF + +++ +L+ L L S +L V Sbjct: 72 ALDYLNIDEKNNASLFKTLLEDAMRVSSKEVLLIVGGSSFYLKSILEGLSSMPKLSGEEV 131 Query: 168 VKIS 171 VKI Sbjct: 132 VKIE 135 >gi|295135714|ref|YP_003586390.1| recombination factor protein RarA [Zunongwangia profunda SM-A87] gi|294983729|gb|ADF54194.1| recombination factor protein RarA [Zunongwangia profunda SM-A87] Length = 424 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 50/149 (33%), Gaps = 24/149 (16%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS---------------TRFSNIAKSLDSILIDTRK 109 +I GP G GK+ LANI +++S AK D + Sbjct: 40 PSMIFWGPPGVGKTTLANIIANESDRPFFTLSAISSGVKDVREVIEKAKRSDGLFTTKSP 99 Query: 110 PVLLEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVV 168 + +++I + L + L+ A T S+ V L SR V Sbjct: 100 ILFIDEIHRFSKSQQDSLL----GAVEKGWVTLIGATTENPSFEVISA-LLSR---CQVY 151 Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKL 197 + + L ++ + + +I K + Sbjct: 152 VLKPFSKEDLIALLNRAMKEDKIIASKNI 180 >gi|303272823|ref|XP_003055773.1| proteasomal ATPase [Micromonas pusilla CCMP1545] gi|226463747|gb|EEH61025.1| proteasomal ATPase [Micromonas pusilla CCMP1545] Length = 399 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + + ++ ++ I ++ E Sbjct: 170 PPKGVLLYGPPGTGKTLLAKAIASNIDANFLKVVSSAIVDKYIGESARLIRE 221 >gi|195338165|ref|XP_002035696.1| GM14837 [Drosophila sechellia] gi|194128789|gb|EDW50832.1| GM14837 [Drosophila sechellia] Length = 944 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 12/25 (48%), Positives = 16/25 (64%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDK 87 PSR ++L GP G GK+ LA S + Sbjct: 281 PSRGLLLHGPPGCGKTFLARAISGQ 305 Score = 39.4 bits (91), Expect = 0.52, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 PS V+ L GP G GK+ LA ++++ S L ++ + + + Sbjct: 696 PSGVL-LCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESERAV 744 >gi|217979120|ref|YP_002363267.1| AAA ATPase central domain protein [Methylocella silvestris BL2] gi|217504496|gb|ACK51905.1| AAA ATPase central domain protein [Methylocella silvestris BL2] Length = 437 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 65/187 (34%), Gaps = 26/187 (13%) Query: 54 RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIA-----KSLDSILIDTR 108 L S +I GP G+GK+ +A + + ++ A L + + R Sbjct: 42 ALTRRIASGSLGSLIFWGPPGTGKTTVARLLAHETNFAFVQVSAIFSGVAELKKLFEEAR 101 Query: 109 KPVLLEDIDLLDFNDTQLFHIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDL 158 + LL ++ H N + + L+ T L Sbjct: 102 GRRAIGQGTLLFVDEI---HRFNRAQQDSFLPVMEDGAITLIGATTENPSFELNAA---L 155 Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKM--FADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216 SR A+V+ D++ +EKV+ + R + ++ A +++ + A L Sbjct: 156 LSR---ASVLTFRALDEEAIEKVLSRAETHEARPLPLEPAARAAMIRMADGDGRAALTLA 212 Query: 217 DKMDNLA 223 +++ A Sbjct: 213 EEVWRAA 219 >gi|159129680|gb|EDP54794.1| mitochondrial AAA ATPase, putative [Aspergillus fumigatus A1163] Length = 952 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 17/30 (56%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 ++L GP G+GK+ LA + +S +T Sbjct: 681 PGLLLYGPPGTGKTLLAKAVARESGATVLE 710 >gi|168050884|ref|XP_001777887.1| predicted protein [Physcomitrella patens subsp. patens] gi|162670752|gb|EDQ57315.1| predicted protein [Physcomitrella patens subsp. patens] Length = 550 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 28/52 (53%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P+R V+L GP G K+ LA + S++T FS L S+ + + +L + Sbjct: 311 PARGVLLHGPPGCSKTTLAKAAAHSSQATLFSLSGADLYSMYVGEGEALLRD 362 >gi|222480132|ref|YP_002566369.1| AAA family ATPase, CDC48 subfamily [Halorubrum lacusprofundi ATCC 49239] gi|222453034|gb|ACM57299.1| AAA family ATPase, CDC48 subfamily [Halorubrum lacusprofundi ATCC 49239] Length = 740 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 59/165 (35%), Gaps = 40/165 (24%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106 P + V+L GP G+GK+ +A ++++ + S I ++ Sbjct: 495 PPKGVLLYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKARQV 554 Query: 107 TRKPVLLEDIDLLD---FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 + + +++D L + QL ++ + + +++ A P Sbjct: 555 SPTIIFFDELDSLAPSRGQEMGNNVSERVVNQLLTELDGLEEMGDVMVIGATNRPDMIDP 614 Query: 154 CLPDLCS----RLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194 L L S RL V I PD + E+++ D + D Sbjct: 615 AL--LRSGRFDRL-----VMIGQPDQEGRERILEIHTQDTPLAPD 652 Score = 39.4 bits (91), Expect = 0.52, Method: Composition-based stats. Identities = 24/165 (14%), Positives = 63/165 (38%), Gaps = 37/165 (22%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P + V+L GP G+GK+ LA ++++ ++ FS + + + Sbjct: 222 PPQGVLLHGPPGTGKTLLAKAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDAKEE 281 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLM--TARTFPVSWG 152 + + ++++D + QL +++ + +++ T R V Sbjct: 282 SPSIIFIDELDSIAPKREDVTGEVERRVVAQLLTMMDGLETRGQVVVIGATNRVDSVDPA 341 Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 + P R ++I +PD+ ++++ R + + + Sbjct: 342 LRRP---GRFD--REIEIGVPDEVGRKEILQ--IHTRGMPLSDDV 379 >gi|115762608|ref|XP_784872.2| PREDICTED: similar to GA19899-PA [Strongylocentrotus purpuratus] gi|115948961|ref|XP_001198560.1| PREDICTED: similar to GA19899-PA [Strongylocentrotus purpuratus] Length = 444 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 13/80 (16%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + ++L GP G+GKS LA S + ST + + L S + + ++ E Sbjct: 233 PWKRILLYGPPGTGKSRLAQAVSKEINSTFYCVSSADLISSWVGESEKIIKE-------- 284 Query: 123 DTQLFHIINSIHQYDSSLLM 142 LFH + Q S++ Sbjct: 285 ---LFHH--ATQQEGRSVVF 299 >gi|47086209|ref|NP_998080.1| spastin [Danio rerio] gi|45709942|gb|AAH67715.1| Spastin [Danio rerio] Length = 570 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 30/50 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S +T F+ A +L S + + ++ Sbjct: 327 PARGLLLFGPPGNGKTMLAKAVAMESNATFFNISAATLTSKYVGEGEKLV 376 >gi|15899170|ref|NP_343775.1| AAA ATPase family protein [Sulfolobus solfataricus P2] gi|284173716|ref|ZP_06387685.1| AAA ATPase family protein [Sulfolobus solfataricus 98/2] gi|13815723|gb|AAK42565.1| AAA family ATPase [Sulfolobus solfataricus P2] gi|261600918|gb|ACX90521.1| Microtubule-severing ATPase [Sulfolobus solfataricus 98/2] Length = 607 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 36/220 (16%), Positives = 83/220 (37%), Gaps = 48/220 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSR------------STRFSNIAKSLDSILIDTR-- 108 P + ++L GP G GK+ + +++S+ S + L + + R Sbjct: 94 PPKGMLLFGPPGCGKTMMMRALANESKLNFLYVNISDIMSKWYGESEARLRELFNNARKN 153 Query: 109 KPVLL--EDIDLLDFNDTQ---------LFHI----INSIHQYDSSLLMTARTFPVSWGV 153 P +L ++ID + L + I+ +H D +++ + P Sbjct: 154 APCILFFDEIDTIGVKRESHTGDSVTPRLLSLMLSEIDGLHSEDGVIVVGSTNVPQMLDK 213 Query: 154 CLPDLCSRLKAAT---VVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMER-- 207 L L+A ++ I P+ + ++++ R + + + + + ER Sbjct: 214 AL------LRAGRFDKLIYIGPPNKEARKQILQIHC--RGKPLAEDVDFDKLAEITERYS 265 Query: 208 --SLVFA-EKLVDKMDNLALSRG--MGITRSLAAEVLKET 242 L ++ K+ + A+ +G IT + E++K+ Sbjct: 266 GADLANLCQEAARKVASEAIEKGADRKITMADFIELIKKY 305 Score = 37.4 bits (86), Expect = 1.9, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 33/84 (39%), Gaps = 16/84 (19%) Query: 53 VRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS--------DKSRSTR--------FSNI 96 +L++ P R ++L GP G GK+ +A + S + + I Sbjct: 367 YKLLEQLRVPPIRGILLYGPPGVGKTMMAKALAKTLNVKLIALSGAEIMYKGYEGAIAAI 426 Query: 97 AKSLDSILIDTRKPVLLEDIDLLD 120 + + + +LL+++D + Sbjct: 427 KEVFNRARENKPAIILLDELDAIA 450 >gi|77411974|ref|ZP_00788304.1| ATPase, AAA family [Streptococcus agalactiae CJB111] gi|77162000|gb|EAO72981.1| ATPase, AAA family [Streptococcus agalactiae CJB111] Length = 422 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 64/166 (38%), Gaps = 22/166 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKS-------RSTR--FSNIAKSLDSILIDTRKPVLLEDID 117 +IL GP G GK+ +A+ + + +T + + + +LL++I Sbjct: 42 MILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIH 101 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 LD + + + +++ A T + V P + SR + ++ ++ Sbjct: 102 RLDKTKQDFLLP---LLENGNIIMIGATTENPFFSVT-PAIRSR---VQIFELEPLSNED 154 Query: 178 LEKVIVKMFAD--RQ----IFIDKKLAAYIVQRMERSLVFAEKLVD 217 ++K I +D R + ID + +IV L A +D Sbjct: 155 IKKAIQLAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLD 200 >gi|66807887|ref|XP_637666.1| AAA ATPase domain-containing protein [Dictyostelium discoideum AX4] gi|60466071|gb|EAL64138.1| AAA ATPase domain-containing protein [Dictyostelium discoideum AX4] Length = 574 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 55/150 (36%), Gaps = 35/150 (23%) Query: 65 RVVILVGPSGSGKS-CLANIWSDKSRSTRFSNIAKSLDSILIDTR-------KPVLLEDI 116 R +L GP GSGK+ + ++ + +S N++K + I + ++LEDI Sbjct: 283 RGYLLYGPPGSGKTSFILSMAGNFGKSISIMNMSKGIHDGNIHSIIQKCNKDTILVLEDI 342 Query: 117 DLL---------DFNDTQLFH-IIN----SIHQYDSSLLMTA----RTFPVSWGVCLPDL 158 D + ND F ++N L+MT R P DL Sbjct: 343 DAVFVKRKNNSAAGNDVLTFSGLLNAIDGLASSDGRILMMTTNHLERLSPALIRPGRIDL 402 Query: 159 CSRLKAATVVKISLPDDDFLEKVIVKMFAD 188 + A+ +I ++ K F D Sbjct: 403 KVKFDYASNHQIE---------LMFKRFFD 423 >gi|326513256|dbj|BAK06868.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 782 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 25/101 (24%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110 P ++L GP G GK+ LA+ ++++ + A + S + + Sbjct: 234 PVAGILLHGPPGCGKTTLAHAIANETGVPFYKISAPEVVSGVSGASEENIRVLFKKAYRT 293 Query: 111 ----VLLEDIDLLDFNDTQLFHIINSIHQYDSSL---LMTA 144 V +++ID + N + + + LMT Sbjct: 294 APSIVFIDEIDAIASKRE------NLQREMERRIVTQLMTC 328 >gi|322496701|emb|CBZ31770.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 4849 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 2/66 (3%) Query: 50 EQAVRLIDSWPSW--PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107 A L++ + SW R V+LVGP +GK+ L W+ S S + Sbjct: 1616 AAADALLERFTSWMNVHRRVLLVGPPFAGKTRLWRTWAGSQSPLIVSLPLISAADFYGTS 1675 Query: 108 RKPVLL 113 +P L Sbjct: 1676 TEPSFL 1681 >gi|321465281|gb|EFX76283.1| hypothetical protein DAPPUDRAFT_322486 [Daphnia pulex] Length = 843 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 18/73 (24%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK--------------- 109 R ++L GP GSGKS L + + +T F SL Sbjct: 560 RSILLAGPHGSGKSFLMHAICNHIGATLFDISNSSLMGRYPGKAGMTMLIHLITKVSRLL 619 Query: 110 ---PVLLEDIDLL 119 +++ED+D L Sbjct: 620 QPSVIVIEDVDRL 632 >gi|270003538|gb|EEZ99985.1| hypothetical protein TcasGA2_TC002784 [Tribolium castaneum] Length = 876 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 38/228 (16%), Positives = 78/228 (34%), Gaps = 52/228 (22%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110 P R +L GP G GK+ LAN + + A L + + + Sbjct: 241 PPRGFLLHGPPGCGKTLLANAIAGEIGVPLLKVAAPELVAGVSGESEERIRELFERAIFS 300 Query: 111 ----VLLEDIDLLDFNDT------------QLFHIINSIHQY---DSSLLMTARTFPVSW 151 + +++ID + N QL ++ + Q D L++ A P + Sbjct: 301 TPCILFIDEIDAITPNRQNAQKEMERRIVAQLLSCLDDLSQNECGDRVLVIGATNRPDAI 360 Query: 152 GVCLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQR--- 204 P L +A + + +PD +++ + A + + + ++ + Sbjct: 361 D---PALR---RAGRFDREICLGIPDVQARVQILKVLTAK--LKLSEDFDYDFLAKHTPG 412 Query: 205 ------MERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 M + A V++M N + A + L+E Q+ + Sbjct: 413 YVGADLMSLTREAAMAAVNRMLNKLKEQHKLAQIVAAEKALEEKQKQE 460 Score = 37.4 bits (86), Expect = 2.0, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 22/46 (47%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 V+L GP G GK+ LA ++++ S L ++ + + + Sbjct: 628 VLLCGPPGCGKTLLAKAMANEAGINFISVKGPELLNMYVGESERAV 673 >gi|239825648|ref|YP_002948272.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. WCH70] gi|239805941|gb|ACS23006.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. WCH70] Length = 635 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 31/198 (15%), Positives = 63/198 (31%), Gaps = 45/198 (22%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ FS + + Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFETAKKNAPCI 257 Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + + L + ++ + + +++ A P L Sbjct: 258 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFNGNEGIIIIAATNRPDILDPAL 317 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211 L+ + + PD E V+ R +D+ + I R Sbjct: 318 ------LRPGRFDRQITVDRPDVKGREAVLRVHA--RNKPLDESVDLKAIAMRTP-GFSG 368 Query: 212 AEKLVDKMDNLALSRGMG 229 A L + ++ AL Sbjct: 369 A-DLENLLNEAALVAARR 385 >gi|229015468|ref|ZP_04172468.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus AH1273] gi|229021677|ref|ZP_04178260.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus AH1272] gi|228739613|gb|EEL90026.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus AH1272] gi|228745826|gb|EEL95828.1| FtsH-2 peptidase; Metallo peptidase; MEROPS family M41; membrane protease FtsH catalytic subunit [Bacillus cereus AH1273] Length = 584 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 63/197 (31%), Gaps = 45/197 (22%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ FS + + Sbjct: 147 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 206 Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + + L + ++ + +++ A P L Sbjct: 207 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANEGIIIIAATNRPDILDPAL 266 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211 L+ + + PD + E V+ R +D+ + I R Sbjct: 267 ------LRPGRFDRQITVDRPDVNGREAVLKVHA--RNKPLDENVNLRAIATRTP-GFSG 317 Query: 212 AEKLVDKMDNLALSRGM 228 A L + ++ AL Sbjct: 318 A-DLENLLNEAALVAAR 333 >gi|213409103|ref|XP_002175322.1| mitochondrial outer membrane ATPase Msp1 [Schizosaccharomyces japonicus yFS275] gi|212003369|gb|EEB09029.1| mitochondrial outer membrane ATPase Msp1 [Schizosaccharomyces japonicus yFS275] Length = 350 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 50/142 (35%), Gaps = 49/142 (34%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS-NIAKSLDSILIDTRKPV-------------- 111 ++L GP G GK+ LA + +S +T + N+ D ++ K V Sbjct: 130 LLLYGPPGCGKTMLAKALAKQSGATFINVNVGLLTDKWFGESNKLVEALFRLAHKLEPTV 189 Query: 112 -LLEDID-----LLDFNDTQLFHI-----------------------INSIHQYDSSLLM 142 +++ID + + + N I D ++L Sbjct: 190 IFIDEIDSFLRQRQSTDHEAMAQLKAEFMSLWDGLLTGQSRVVVLGATNRIQDIDEAIL- 248 Query: 143 TARTFPVSWGVCLPDLCSRLKA 164 R P ++ + LPD SR +A Sbjct: 249 --RRMPKTFHIKLPD--SRQRA 266 >gi|189425232|ref|YP_001952409.1| Holliday junction DNA helicase RuvB [Geobacter lovleyi SZ] gi|238692114|sp|B3E468|RUVB_GEOLS RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|189421491|gb|ACD95889.1| Holliday junction DNA helicase RuvB [Geobacter lovleyi SZ] Length = 338 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 40/191 (20%), Positives = 68/191 (35%), Gaps = 31/191 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G GK+ LANI + + S ++ LE D+L ++ Sbjct: 55 VLLYGPPGLGKTTLANIIACEMGVNIKSTSGPVIERPGDLAAILTNLEPHDVLFIDEI-- 112 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF-----LEKV 181 H ++ + + +L P L + + +A +K+ LP + Sbjct: 113 -HRLSHVVEE---ILY-----PAMEDFQLDIIIGQGPSARSIKLDLPRFTLVGATTRAGL 163 Query: 182 IVKMFADRQIFID------KKLAAYIVQRMERSLVFAEKLVDKMDNLA---LSRGMGITR 232 + DR I A+IV R R L A +D L+R T Sbjct: 164 LSSPLRDRFGVISRLEFYTHDELAFIVTRSARILGMA------IDREGALELARRSRGTP 217 Query: 233 SLAAEVLKETQ 243 +A +L+ + Sbjct: 218 RIANRLLRRVR 228 >gi|163751870|ref|ZP_02159084.1| ATP-dependent protease ATP-binding subunit [Shewanella benthica KT99] gi|161328220|gb|EDP99384.1| ATP-dependent protease ATP-binding subunit [Shewanella benthica KT99] Length = 425 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 22/111 (19%) Query: 24 KEEQLFFSFPRCLGISRDDLLVH-----SAIEQAV----------RLIDSWPSWPSRVVI 68 K++Q P L DD ++ + AV D S ++ Sbjct: 59 KQDQDKLPTPHELRAHLDDYVIGQDKAKKVLSVAVYNHYKRLKNSNHKDGVELGKSNIL- 117 Query: 69 LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 L+GP+GSGK+ LA ++ RF ++ ++ T + ED++ + Sbjct: 118 LIGPTGSGKTLLAETFA------RFLDVPFTMADATTLTEAGYVGEDVENI 162 >gi|156084130|ref|XP_001609548.1| ATPase, AAA family [Babesia bovis] gi|154796800|gb|EDO05980.1| ATPase, AAA family [Babesia bovis] Length = 363 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 19/32 (59%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P R ++L GP G+GK+ LA + + ++ + Sbjct: 148 PWRGILLYGPPGTGKTYLAKACATELDASFIA 179 >gi|138893741|ref|YP_001124194.1| cell-division protein and general stress protein [Geobacillus thermodenitrificans NG80-2] gi|196250783|ref|ZP_03149470.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. G11MC16] gi|134265254|gb|ABO65449.1| Cell-division protein and general stress protein(class III heat-shock) [Geobacillus thermodenitrificans NG80-2] gi|196209733|gb|EDY04505.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. G11MC16] Length = 631 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 30/197 (15%), Positives = 62/197 (31%), Gaps = 43/197 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ FS + + Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFETAKKNAPCI 257 Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + + L + ++ + + +++ A P L Sbjct: 258 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFNGNEGIIIIAATNRPDILDPAL 317 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 L+ + + PD E V+ ++ + L I R A Sbjct: 318 ------LRPGRFDRQITVDRPDVKGREAVLRVHARNKPLDESVDLKT-IAMRTP-GFSGA 369 Query: 213 EKLVDKMDNLALSRGMG 229 L + ++ AL Sbjct: 370 -DLENLLNEAALVAARR 385 >gi|119481445|ref|XP_001260751.1| mitochondrial AAA ATPase, putative [Neosartorya fischeri NRRL 181] gi|119408905|gb|EAW18854.1| mitochondrial AAA ATPase, putative [Neosartorya fischeri NRRL 181] Length = 956 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 17/30 (56%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 ++L GP G+GK+ LA + +S +T Sbjct: 685 PGLLLYGPPGTGKTLLAKAVARESGATVLE 714 >gi|94734052|emb|CAK10965.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Danio rerio] Length = 269 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + ++ S+ I ++ E Sbjct: 136 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 187 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 188 ------MFNYARDHQ 196 >gi|57529874|ref|NP_001006494.1| 26S protease regulatory subunit S10B [Gallus gallus] gi|53130584|emb|CAG31621.1| hypothetical protein RCJMB04_8n6 [Gallus gallus] Length = 389 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + ++ S+ I ++ E Sbjct: 166 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 217 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 218 ------MFNYARDHQ 226 >gi|30583901|gb|AAP36199.1| Homo sapiens proteasome (prosome, macropain) 26S subunit, ATPase, 6 [synthetic construct] gi|60653563|gb|AAX29475.1| proteasome 26S subunit 6 [synthetic construct] Length = 390 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + ++ S+ I ++ E Sbjct: 166 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 217 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 218 ------MFNYARDHQ 226 >gi|25027785|ref|NP_737839.1| insertion element hypothetical protein [Corynebacterium efficiens YS-314] gi|23493068|dbj|BAC18039.1| insertion element conserved hypothetical protein [Corynebacterium efficiens YS-314] Length = 271 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 55/138 (39%), Gaps = 27/138 (19%) Query: 59 WPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL-------------- 104 W + P+ ++IL P+GSGK+ L + +S +D + Sbjct: 102 WGADPTNLLILS-PTGSGKTYLTCAVGISACHNGYSVAYWRMDDLARRLAVTRIDTLEHE 160 Query: 105 -----IDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLP 156 + ++L+D + ++ LF I+ + + + ++ +++ P W LP Sbjct: 161 DMLAGLFGVDVLILDDFLTVGVDERTASDLFAIL-ANRENIHATIIGSQSTPGHWLDVLP 219 Query: 157 DLCSRLKAATVVKISLPD 174 D S ++V+ PD Sbjct: 220 DKNS---GDSIVRARPPD 234 >gi|87306778|ref|ZP_01088925.1| hypothetical protein DSM3645_10602 [Blastopirellula marina DSM 3645] gi|87290957|gb|EAQ82844.1| hypothetical protein DSM3645_10602 [Blastopirellula marina DSM 3645] Length = 255 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 2/78 (2%) Query: 38 ISRDDLLVHSAIEQAVRLID-SWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNI 96 +S + LL + +A +D W S R +++GP+G GKS L + ++ + + S Sbjct: 11 LSDEQLLRSAPFAEAWARLDYVWQS-NRRCAVVIGPAGVGKSTLMSRYAAQLAAAHVSVA 69 Query: 97 AKSLDSILIDTRKPVLLE 114 + + +L+E Sbjct: 70 QIAATGLASYDMASLLVE 87 >gi|167037427|ref|YP_001665005.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167040094|ref|YP_001663079.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter sp. X514] gi|256752589|ref|ZP_05493443.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter ethanolicus CCSD1] gi|300914177|ref|ZP_07131493.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter sp. X561] gi|307724587|ref|YP_003904338.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter sp. X513] gi|320115840|ref|YP_004185999.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|238687547|sp|B0K0L8|RUVB_THEPX RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|238687653|sp|B0K956|RUVB_THEP3 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|166854334|gb|ABY92743.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter sp. X514] gi|166856261|gb|ABY94669.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256748527|gb|EEU61577.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter ethanolicus CCSD1] gi|300889112|gb|EFK84258.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter sp. X561] gi|307581648|gb|ADN55047.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter sp. X513] gi|319928931|gb|ADV79616.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 338 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 68/201 (33%), Gaps = 43/201 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P V+L GP G GK+ LA + S++ +++ L++ D+L + Sbjct: 51 PLDHVLLYGPPGLGKTTLATVISNEMGVGIKITSGPAIEKSGDLAAILTNLQENDILFID 110 Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCL-------PDLCS-RLKAATVVKISLPD 174 + H +N + +L P L P S RL I Sbjct: 111 EI---HRLNRSVEE---ILY-----PAMEDFELDIVIGKGPSARSIRLSLPRFTLIGA-- 157 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRME-RSLVFAEKLVDK--------MDNLA-- 223 ++ DR I R++ S+ ++++ + +D A Sbjct: 158 -TTRAALMTSPLRDRFGVI---------NRLDYYSVEELKEIIKRSANILNIGIDEKAAL 207 Query: 224 -LSRGMGITRSLAAEVLKETQ 243 +++ T +A +LK + Sbjct: 208 EIAKRSRGTPRIANRLLKRVR 228 >gi|71756045|ref|XP_828937.1| ATPase [Trypanosoma brucei TREU927] gi|70834323|gb|EAN79825.1| ATPase, putative [Trypanosoma brucei] Length = 700 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 5/53 (9%) Query: 47 SAIEQAVRLIDS-WPSWPSRV----VILVGPSGSGKSCLANIWSDKSRSTRFS 94 SA E A LI +WP ++L GPSG+GKS L ++K R+ F Sbjct: 78 SAFEHARDLICGILANWPYPSQAVSLLLCGPSGNGKSYLVRAAAEKVRTQDFH 130 Score = 36.3 bits (83), Expect = 3.9, Method: Composition-based stats. Identities = 11/31 (35%), Positives = 18/31 (58%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF 93 PS V+L GP G+GK+ LA + + ++ Sbjct: 444 PSTGVLLYGPPGTGKTMLARAIATELNASFI 474 >gi|46190732|ref|ZP_00121187.2| COG1484: DNA replication protein [Bifidobacterium longum DJO10A] Length = 166 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 22/112 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL------------------IDTR 108 ++L GP G+GKS LA + + +L I Sbjct: 22 LVLYGPVGTGKSHLAIAIGRLACERGVPVRFFTATGLLMRLRRAQQENRLDRELASIGKA 81 Query: 109 KPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 + +++++ L ++ LF II+ ++ S++ T WG L D Sbjct: 82 RLLIIDEFGYLPIDEEGSRLLFQIISDSYET-RSIIYTTNIEFSGWGRVLGD 132 >gi|330998553|ref|ZP_08322373.1| ATPase, AAA family protein [Paraprevotella xylaniphila YIT 11841] gi|329568151|gb|EGG49970.1| ATPase, AAA family protein [Paraprevotella xylaniphila YIT 11841] Length = 423 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 34/195 (17%), Positives = 70/195 (35%), Gaps = 29/195 (14%) Query: 67 VILVGPSGSGKSCLANIWSDK--SRSTRFSNIAKSLDSI------------LIDTRKPVL 112 IL GP G GK+ LA I + K + S + + + + Sbjct: 42 FILWGPPGVGKTTLAQIIAHKLETPFYTLSAVTSGVKDVREVIEKARNNRFFTQASPILF 101 Query: 113 LEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 +++I + L + + L+ A T S+ V P L SR + + Sbjct: 102 IDEIHRFSKSQQDSLL----GAVEQGTVTLIGATTENPSFEVIRP-LLSR---CQLYVLK 153 Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAY-----IVQRMERSLVFAEKLVDKMDNLALSR 226 D L +++ K +R I + K + +++ +++ + + Sbjct: 154 SLTKDDLMELLHK-AVERDIILKTKHIEFRETDAMLRYSGGDARKLLNILELVVEADGTD 212 Query: 227 GMGITRSLAAEVLKE 241 + IT ++ AE L++ Sbjct: 213 QVVITDAVVAERLQQ 227 >gi|326390113|ref|ZP_08211674.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter ethanolicus JW 200] gi|325993761|gb|EGD52192.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter ethanolicus JW 200] Length = 338 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 68/201 (33%), Gaps = 43/201 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P V+L GP G GK+ LA + S++ +++ L++ D+L + Sbjct: 51 PLDHVLLYGPPGLGKTTLATVISNEMGVGIKITSGPAIEKSRDLAAILTNLQENDILFID 110 Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCL-------PDLCS-RLKAATVVKISLPD 174 + H +N + +L P L P S RL I Sbjct: 111 EI---HRLNRSVEE---ILY-----PAMEDFELDIVIGKGPSARSIRLSLPRFTLIGA-- 157 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRME-RSLVFAEKLVDK--------MDNLA-- 223 ++ DR I R++ S+ ++++ + +D A Sbjct: 158 -TTRAALMTSPLRDRFGVI---------NRLDYYSVEELKEIIKRSANILNIGIDEDAAL 207 Query: 224 -LSRGMGITRSLAAEVLKETQ 243 +++ T +A +LK + Sbjct: 208 EIAKRSRGTPRIANRLLKRVR 228 >gi|321398960|emb|CAM65627.2| conserved hypothetical protein [Leishmania infantum JPCM5] Length = 4849 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 2/66 (3%) Query: 50 EQAVRLIDSWPSW--PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107 A L++ + SW R V+LVGP +GK+ L W+ S S + Sbjct: 1616 AAADALLERFTSWMNVHRRVLLVGPPFAGKTRLWRTWAGSQSPLIVSLPLISAADFYGTS 1675 Query: 108 RKPVLL 113 +P L Sbjct: 1676 TEPSFL 1681 >gi|285808236|gb|ADC35770.1| Holliday junction DNA helicase B [uncultured bacterium 293] Length = 341 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 V+L GP G GK+ LA++ + + +T + ++ LE ++L ++ Sbjct: 57 VLLFGPPGVGKTSLAHVIAAELGATIKATAGPIIERAGDLAALLTALEPREVLFVDEI 114 >gi|254885205|ref|ZP_05257915.1| IstB IS21 family transposase [Bacteroides sp. 4_3_47FAA] gi|254837998|gb|EET18307.1| IstB IS21 family transposase [Bacteroides sp. 4_3_47FAA] Length = 219 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 43/116 (37%), Gaps = 24/116 (20%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP----------VLL 113 R ++L G G+GK+ +A K+ F+ + S+ +L R+ + Sbjct: 101 GRNLVLYGNPGTGKTHIATALGIKACQQDFTVLFTSVPVLLTQIREAKSAKTLRTLQLRF 160 Query: 114 EDIDLLDFND-----------TQLF-HIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 E DL+ ++ LF H+ S+ + ++T W + D Sbjct: 161 EKYDLVICDEFGYVSCDKEGGELLFNHL--SLRAGKKATIITTNLAFNRWNEIIKD 214 >gi|226292848|gb|EEH48268.1| ABC transporter family protein [Paracoccidioides brasiliensis Pb18] Length = 570 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 11/28 (39%), Positives = 20/28 (71%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRS 90 P +++L+GPSGSGK+ L N+ + + + Sbjct: 60 PGELMVLMGPSGSGKTTLLNVLAHRDSA 87 >gi|295661482|ref|XP_002791296.1| ATP-binding cassette sub-family G member 4 [Paracoccidioides brasiliensis Pb01] gi|226280858|gb|EEH36424.1| ATP-binding cassette sub-family G member 4 [Paracoccidioides brasiliensis Pb01] Length = 607 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 11/28 (39%), Positives = 20/28 (71%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRS 90 P +++L+GPSGSGK+ L N+ + + + Sbjct: 158 PGELMVLMGPSGSGKTTLLNVLAHRDSA 185 >gi|297192938|ref|ZP_06910336.1| cell division protein FtsH [Streptomyces pristinaespiralis ATCC 25486] gi|297151567|gb|EDY66565.2| cell division protein FtsH [Streptomyces pristinaespiralis ATCC 25486] Length = 680 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 35/204 (17%), Positives = 65/204 (31%), Gaps = 49/204 (24%) Query: 67 VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110 V+L GP G+GK+ LA + ++ S + + + Sbjct: 207 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKANAPAI 266 Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 V +++ID + D + L + ++ +L+ A P L Sbjct: 267 VFVDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDVKGGVILIAATNRPDILDPAL 326 Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVKMFADRQIFIDKKL-- 197 PD+ RL+ V + P D L V + + L Sbjct: 327 LRPGRFDRQIAVDRPDMQGRLEILKVHQKGKPVAPDVDLGAVARRTPGFTGADLSNVLNE 386 Query: 198 AAYIVQRMERSLVFAEKLVDKMDN 221 AA + R ++ L+ L + +D Sbjct: 387 AALLTARSDKKLIDNHALDEAIDR 410 >gi|225680516|gb|EEH18800.1| ATP-binding cassette sub-family G member 5 [Paracoccidioides brasiliensis Pb03] Length = 670 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 11/28 (39%), Positives = 20/28 (71%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRS 90 P +++L+GPSGSGK+ L N+ + + + Sbjct: 60 PGELMVLMGPSGSGKTTLLNVLAHRDSA 87 >gi|222099516|ref|YP_002534084.1| ATP-dependent Clp protease ATP-binding subunit clpX [Thermotoga neapolitana DSM 4359] gi|221571906|gb|ACM22718.1| ATP-dependent Clp protease ATP-binding subunit clpX [Thermotoga neapolitana DSM 4359] Length = 406 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 8/65 (12%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN--DT 124 V+L+GP+G+GK+ LA I + N+ ++ T + ED++ + + Sbjct: 106 VLLIGPTGTGKTYLARILAK------ILNVPFAIADATPLTEAGYVGEDVENVVLRLLEA 159 Query: 125 QLFHI 129 F + Sbjct: 160 ANFDL 164 >gi|167761716|ref|ZP_02433843.1| hypothetical protein BACSTE_00050 [Bacteroides stercoris ATCC 43183] gi|167700442|gb|EDS17021.1| hypothetical protein BACSTE_00050 [Bacteroides stercoris ATCC 43183] Length = 251 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 43/116 (37%), Gaps = 24/116 (20%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP----------VLL 113 R ++L G G+GK+ +A K+ F+ + S+ +L R+ + Sbjct: 101 GRNLVLYGNPGTGKTHIATALGIKACQQDFTVLFTSVPVLLTQIREAKSAKTLRTLQLRF 160 Query: 114 EDIDLLDFND-----------TQLF-HIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 E DL+ ++ LF H+ S+ + ++T W + D Sbjct: 161 EKYDLVICDEFGYVSCDKEGGELLFNHL--SLRAGKKATIITTNLAFNRWNEIIKD 214 >gi|170576829|ref|XP_001893780.1| 26S protease regulatory subunit 6A [Brugia malayi] gi|158600003|gb|EDP37378.1| 26S protease regulatory subunit 6A, putative [Brugia malayi] Length = 439 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 64/183 (34%), Gaps = 38/183 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V+L GP G+GK+ +A + +++ST L + I ++ Sbjct: 219 PPKGVLLYGPPGTGKTMMARAVAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 278 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINS---IHQYDSSLLMTARTFPVSW 151 ++++D + + + ++N D ++ A Sbjct: 279 APAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNDDIKVIAATNRVDVL 338 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL +++ P +D +++ R++ + K + + R Sbjct: 339 DPAL--LRSGRLD--RKIELPSPTEDARARIMQ--IHSRKMNVHKDVNFEELARCTDDFN 392 Query: 211 FAE 213 A+ Sbjct: 393 GAQ 395 >gi|156058356|ref|XP_001595101.1| hypothetical protein SS1G_03189 [Sclerotinia sclerotiorum 1980] gi|154700977|gb|EDO00716.1| hypothetical protein SS1G_03189 [Sclerotinia sclerotiorum 1980 UF-70] Length = 823 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 64/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R V++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 255 PPRGVLMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 314 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + + ++M A P S Sbjct: 315 SPAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSID-- 372 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + V I +PD +++ + + + + Sbjct: 373 -PALR-RFGRFDREVDIGIPDPTGRLEILQ--IHTKNMKLGDDV 412 >gi|150005702|ref|YP_001300446.1| putative transposase [Bacteroides vulgatus ATCC 8482] gi|218128931|ref|ZP_03457735.1| hypothetical protein BACEGG_00503 [Bacteroides eggerthii DSM 20697] gi|294778103|ref|ZP_06743535.1| IstB-like ATP-binding protein [Bacteroides vulgatus PC510] gi|301312155|ref|ZP_07218074.1| putative IstB IS21 family transposase protein [Bacteroides sp. 20_3] gi|319641397|ref|ZP_07996089.1| transposase [Bacteroides sp. 3_1_40A] gi|149934126|gb|ABR40824.1| putative transposase [Bacteroides vulgatus ATCC 8482] gi|217988894|gb|EEC55211.1| hypothetical protein BACEGG_00503 [Bacteroides eggerthii DSM 20697] gi|294448046|gb|EFG16614.1| IstB-like ATP-binding protein [Bacteroides vulgatus PC510] gi|300829830|gb|EFK60481.1| putative IstB IS21 family transposase protein [Bacteroides sp. 20_3] gi|317386916|gb|EFV67803.1| transposase [Bacteroides sp. 3_1_40A] Length = 251 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 43/116 (37%), Gaps = 24/116 (20%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP----------VLL 113 R ++L G G+GK+ +A K+ F+ + S+ +L R+ + Sbjct: 101 GRNLVLYGNPGTGKTHIATALGIKACQQDFTVLFTSVPVLLTQIREAKSAKTLRTLQLRF 160 Query: 114 EDIDLLDFND-----------TQLF-HIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 E DL+ ++ LF H+ S+ + ++T W + D Sbjct: 161 EKYDLVICDEFGYVSCDKEGGELLFNHL--SLRAGKKATIITTNLAFNRWNEIIKD 214 >gi|146077443|ref|XP_001463271.1| hypothetical protein [Leishmania infantum JPCM5] Length = 4849 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 2/66 (3%) Query: 50 EQAVRLIDSWPSW--PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107 A L++ + SW R V+LVGP +GK+ L W+ S S + Sbjct: 1616 AAADALLERFTSWMNVHRRVLLVGPPFAGKTRLWRTWAGSQSPLIVSLPLISAADFYGTS 1675 Query: 108 RKPVLL 113 +P L Sbjct: 1676 TEPSFL 1681 >gi|18073225|emb|CAC80626.1| polyprotein [Sapovirus Hu/Bristol/1998/UK] Length = 2280 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLED 115 +IL GP G GK+ LA + T SN + +LD T V + D Sbjct: 477 IILTGPPGIGKTHLAQHLAAGFGKT--SNFSVTLDHHDSYTGNDVAIWD 523 >gi|60683496|ref|YP_213640.1| IstB IS21 family transposase protein [Bacteroides fragilis NCTC 9343] gi|60494930|emb|CAH09745.1| putative IstB IS21 family transposase protein [Bacteroides fragilis NCTC 9343] gi|301164989|emb|CBW24554.1| putative IstB IS21 family transposase protein [Bacteroides fragilis 638R] Length = 251 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 43/116 (37%), Gaps = 24/116 (20%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP----------VLL 113 R ++L G G+GK+ +A K+ F+ + S+ +L R+ + Sbjct: 101 GRNLVLYGNPGTGKTHIATALGIKACQQDFTVLFTSVPVLLTQIREAKSAKTLRTLQLRF 160 Query: 114 EDIDLLDFND-----------TQLF-HIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 E DL+ ++ LF H+ S+ + ++T W + D Sbjct: 161 EKYDLVICDEFGYVSCDKEGGELLFNHL--SLRAGKKATIITTNLAFNRWNEIIKD 214 >gi|327349285|gb|EGE78142.1| vacuolar sorting protein 4b [Ajellomyces dermatitidis ATCC 18188] Length = 840 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 19/40 (47%), Positives = 26/40 (65%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P+R ++L GP G+GK+ LA + +S ST FS A SL S Sbjct: 584 PARGMLLFGPPGTGKTMLARAVATESHSTFFSVSASSLTS 623 >gi|302327390|gb|ADL26591.1| cell division protein FtsH [Fibrobacter succinogenes subsp. succinogenes S85] Length = 676 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 54/163 (33%), Gaps = 36/163 (22%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 +LVGP G+GK+ LA + ++ FS + + Sbjct: 206 ALLVGPPGTGKTLLARAVAGEAGVPFFSMSGSDFVEMFVGVGASRVRDLFETGKKNAPCI 265 Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + + L + ++ + +L+ A P L Sbjct: 266 LFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFTANEGVILIAATNRPDVLDKAL 325 Query: 156 PDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L R VV + PD E+++ R++ + + Sbjct: 326 --LRPGRFDRQIVVGL--PDLKGREEILKVHLKKRKVPLGDDV 364 >gi|294816143|ref|ZP_06774786.1| Putative oxidoreductase [Streptomyces clavuligerus ATCC 27064] gi|326444476|ref|ZP_08219210.1| oxidoreductase [Streptomyces clavuligerus ATCC 27064] gi|294328742|gb|EFG10385.1| Putative oxidoreductase [Streptomyces clavuligerus ATCC 27064] Length = 712 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 38/118 (32%), Gaps = 11/118 (9%) Query: 107 TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR---LK 163 P++++ D T L + +++ V L L R L+ Sbjct: 226 GSTPLVVDATDSGPGLATAL-----ASAADGGRVVLLGSPRAERADVPLRHLHDRGLDLR 280 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME---RSLVFAEKLVDK 218 A V +S D+D L + + R+ + LA Y R R L V Sbjct: 281 GAHVSGLSEADEDRLGDLFFTLLEQRRFTVRDVLADYPAHRAPEVYRRLAEDRAFVSA 338 >gi|242240291|ref|YP_002988472.1| ATP-dependent protease ATP-binding subunit ClpX [Dickeya dadantii Ech703] gi|242132348|gb|ACS86650.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Dickeya dadantii Ech703] Length = 424 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 52/132 (39%), Gaps = 30/132 (22%) Query: 2 NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVH--SA---IEQAV-RL 55 ++++E+ P ++++ P P + DD ++ A + AV Sbjct: 46 DIIREEIKEVAPHRERSALPT----------PHEIRRHLDDYVIGQEPAKKVLAVAVYNH 95 Query: 56 IDSWPSWPSR--------VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107 + + ++L+GP+GSGK+ LA + RF ++ ++ T Sbjct: 96 YKRLRNGEANGGVELGKSNILLIGPTGSGKTLLAETLA------RFLDVPFTMADATTLT 149 Query: 108 RKPVLLEDIDLL 119 + ED++ + Sbjct: 150 EAGYVGEDVENI 161 >gi|194884696|ref|XP_001976314.1| GG20087 [Drosophila erecta] gi|190659501|gb|EDV56714.1| GG20087 [Drosophila erecta] Length = 737 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 22/43 (51%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109 V+LVGP G+GK+ LA + +++ F D +L+ Sbjct: 337 VLLVGPPGTGKTLLARAVAGEAKVPFFHAAGPEFDEVLVGQGA 379 >gi|156373877|ref|XP_001629536.1| predicted protein [Nematostella vectensis] gi|156216539|gb|EDO37473.1| predicted protein [Nematostella vectensis] Length = 434 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 30/215 (13%), Positives = 63/215 (29%), Gaps = 66/215 (30%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V+L GP G+GK+ A ++++ + I L + ++ Sbjct: 209 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 268 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147 ++ID + + +IN + + + +LM Sbjct: 269 KACIVFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 328 Query: 148 ------PVSW----GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P LPDL R A + KI R + +++ + Sbjct: 329 DPALMRPGRLDRKVEFGLPDLEGR---AHIFKIHA----------------RSMSVERDI 369 Query: 198 AAYIVQR-MERSLVF-AEKLVDKMDNLALSRGMGI 230 ++ R S + + A+ + Sbjct: 370 RYELLARLCPNSTGAEIRSVCTEAGMFAIRARRKV 404 >gi|149370912|ref|ZP_01890507.1| NadR-like protein [unidentified eubacterium SCB49] gi|149355698|gb|EDM44256.1| NadR-like protein [unidentified eubacterium SCB49] Length = 186 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Query: 66 VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL-EDIDLLDFNDT 124 V+L GP SGK+ LA + + S ++ DT+K V ED+ + Sbjct: 14 RVVLFGPESSGKTTLAKALASHYNTEWVSEYMRTYLQDKWDTKKEVCTREDLMPIAKGQI 73 Query: 125 QL 126 QL Sbjct: 74 QL 75 >gi|145602125|ref|XP_001403458.1| proteasome regulatory particle subunit Rpt5 [Magnaporthe oryzae 70-15] gi|145010562|gb|EDJ95218.1| proteasome regulatory particle subunit Rpt5 [Magnaporthe oryzae 70-15] Length = 464 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 23/163 (14%), Positives = 55/163 (33%), Gaps = 38/163 (23%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL-------------- 112 ++ GP G+GK+ LA + ++ +T L + I ++ Sbjct: 248 ALMYGPPGTGKTLLARACAAQTDATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKAPSI 307 Query: 113 --LEDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCL 155 ++++D + + ++N D ++ A L Sbjct: 308 IFIDELDAVGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRIKVLAATNRVDVLDPAL 367 Query: 156 PDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L S RL ++ LP+++ +++ R++ D + Sbjct: 368 --LRSGRLD--RKIEFPLPNEEARAQIL--KIHSRKMRFDPAV 404 >gi|16265863|gb|AAL16668.1|AF419850_1 suppressor of K+ transport growth defect-like protein [Musa acuminata AAA Group] Length = 292 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 15/32 (46%), Positives = 20/32 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P R +L GP G+GKS LA + ++ ST FS Sbjct: 21 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFS 52 >gi|28571847|ref|NP_732941.2| spastin, isoform A [Drosophila melanogaster] gi|28571849|ref|NP_651206.3| spastin, isoform B [Drosophila melanogaster] gi|229559935|sp|Q8I0P1|SPAST_DROME RecName: Full=Spastin; AltName: Full=D-Spastin; AltName: Full=Dm-Spastin; AltName: Full=Dspastin gi|28381443|gb|AAF56223.3| spastin, isoform A [Drosophila melanogaster] gi|28381444|gb|AAN13975.2| spastin, isoform B [Drosophila melanogaster] gi|201065827|gb|ACH92323.1| FI06043p [Drosophila melanogaster] Length = 758 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 72/186 (38%), Gaps = 34/186 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P++ ++L GP G+GK+ LA + + +T + A SL S + + ++ Sbjct: 515 PAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHM 574 Query: 113 ------LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL-KAA 165 ++++D L + H + + + L+ P + PD R+ A Sbjct: 575 QPSIIFIDEVDSLLSERSSSEH--EASRRLKTEFLVEFDGLPGN-----PD-GDRIVVLA 626 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 + D+ L + +++ D++ ++ R+ +K +D AL Sbjct: 627 ATNRPQELDEAALRRFTKRVYVS---LPDEQTRELLLNRL------LQKQGSPLDTEALR 677 Query: 226 RGMGIT 231 R IT Sbjct: 678 RLAKIT 683 >gi|134117824|ref|XP_772293.1| hypothetical protein CNBL1610 [Cryptococcus neoformans var. neoformans B-3501A] gi|50254906|gb|EAL17646.1| hypothetical protein CNBL1610 [Cryptococcus neoformans var. neoformans B-3501A] Length = 1159 Score = 39.7 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 9/46 (19%), Positives = 23/46 (50%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 +L GP G+GK+ LA + +S + + ++ + + + ++ Sbjct: 747 ALLFGPPGTGKTLLARAVAAESGARMLAIQPSDVNDMYVGEGEKLV 792 >gi|323308336|gb|EGA61582.1| Rpt1p [Saccharomyces cerevisiae FostersO] Length = 383 Score = 39.7 bits (92), Expect = 0.38, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + ++L GP G+GK+ A ++++ +T I L + ++ E Sbjct: 158 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 209 >gi|323304204|gb|EGA57980.1| Rpt1p [Saccharomyces cerevisiae FostersB] Length = 467 Score = 39.7 bits (92), Expect = 0.38, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + ++L GP G+GK+ A ++++ +T I L + ++ E Sbjct: 242 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 293 >gi|320580457|gb|EFW94679.1| protease subunit component [Pichia angusta DL-1] Length = 442 Score = 39.7 bits (92), Expect = 0.38, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + ++L GP G+GK+ A ++++ +T I L + ++ E Sbjct: 217 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 268 >gi|300710324|ref|YP_003736138.1| hypothetical protein HacjB3_04775 [Halalkalicoccus jeotgali B3] gi|299124007|gb|ADJ14346.1| hypothetical protein HacjB3_04775 [Halalkalicoccus jeotgali B3] Length = 723 Score = 39.7 bits (92), Expect = 0.38, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 27/64 (42%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P R V+L GPSG+GK+ L + ++ + A L + + L E + N Sbjct: 221 PPRGVLLYGPSGTGKTLLGRAIAAETDGYVRTLSASELLASPAGETEDRLREVFEEAAEN 280 Query: 123 DTQL 126 + Sbjct: 281 APAI 284 Score = 36.3 bits (83), Expect = 4.1, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 57/176 (32%), Gaps = 38/176 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------------------NIAK 98 P+ V+L GP G+GK+ LA ++++ S S Sbjct: 492 PATGVLLYGPPGTGKTLLAKAVANEADSNFISIKGPELLDKYVGESERGVREIFAKAREN 551 Query: 99 SLDSILIDTRKPVLLEDIDLLDFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWG 152 + + D + E D + QL ++ + + + +++ P Sbjct: 552 APTVVFFDELDALAAERGDGTGGSKAGERVVSQLLTELDGLEELEDVVVIATTNRPDLID 611 Query: 153 VCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRME 206 L L S RL V + PD+ ++ R + + + + R E Sbjct: 612 DAL--LRSGRLD--RHVHVDAPDEPARREIFAVH--TRGKPLAEDVDLDELAARTE 661 >gi|291234599|ref|XP_002737235.1| PREDICTED: Tat-binding protein-1-like [Saccoglossus kowalevskii] Length = 429 Score = 39.7 bits (92), Expect = 0.38, Method: Composition-based stats. Identities = 25/183 (13%), Positives = 64/183 (34%), Gaps = 38/183 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V+L G G+GK+ +A + +++ST L + I ++ Sbjct: 209 PPKGVLLYGAPGTGKTLMARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 268 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINSIH---QYDSSLLMTARTFPVSW 151 ++++D + + + ++N + +S ++ A Sbjct: 269 LPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSNESIKVIAATNRVDIL 328 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL ++ +P+++ +++ R++ + + + R Sbjct: 329 DPAL--LRSGRLD--RKIEFPVPNEEARARIMQ--IHSRKMNVSADVNFEELARCTDDFN 382 Query: 211 FAE 213 A Sbjct: 383 GAM 385 >gi|255730587|ref|XP_002550218.1| 26S protease regulatory subunit 7 [Candida tropicalis MYA-3404] gi|240132175|gb|EER31733.1| 26S protease regulatory subunit 7 [Candida tropicalis MYA-3404] Length = 444 Score = 39.7 bits (92), Expect = 0.38, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + ++L GP G+GK+ A ++++ +T I L + ++ E Sbjct: 219 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 270 >gi|254577681|ref|XP_002494827.1| ZYRO0A10560p [Zygosaccharomyces rouxii] gi|238937716|emb|CAR25894.1| ZYRO0A10560p [Zygosaccharomyces rouxii] Length = 468 Score = 39.7 bits (92), Expect = 0.38, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + ++L GP G+GK+ A ++++ +T I L + ++ E Sbjct: 243 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 294 >gi|254574136|ref|XP_002494177.1| One of six ATPases of the 19S regulatory particle of the 26S proteasome [Pichia pastoris GS115] gi|238033976|emb|CAY71998.1| One of six ATPases of the 19S regulatory particle of the 26S proteasome [Pichia pastoris GS115] gi|328354003|emb|CCA40400.1| 26S protease regulatory subunit 7 [Pichia pastoris CBS 7435] Length = 441 Score = 39.7 bits (92), Expect = 0.38, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + ++L GP G+GK+ A ++++ +T I L + ++ E Sbjct: 216 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 267 >gi|227113466|ref|ZP_03827122.1| ATP-dependent protease ATP-binding subunit ClpX [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 424 Score = 39.7 bits (92), Expect = 0.38, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 48/132 (36%), Gaps = 30/132 (22%) Query: 2 NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55 ++++E+ P ++++ P P + DD ++ Sbjct: 46 DIIREEIKEVAPHRERSALPT----------PHEIRRHLDDYVIGQEQAKKVLAVAVYNH 95 Query: 56 IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107 + S ++L+GP+GSGK+ LA + RF ++ ++ T Sbjct: 96 YKRLRNGDSSNGIELGKSNILLIGPTGSGKTLLAETLA------RFLDVPFTMADATTLT 149 Query: 108 RKPVLLEDIDLL 119 + ED++ + Sbjct: 150 EAGYVGEDVENI 161 >gi|294813244|ref|ZP_06771887.1| Putative cell division protein FtsH [Streptomyces clavuligerus ATCC 27064] gi|294325843|gb|EFG07486.1| Putative cell division protein FtsH [Streptomyces clavuligerus ATCC 27064] Length = 672 Score = 39.7 bits (92), Expect = 0.38, Method: Composition-based stats. Identities = 35/204 (17%), Positives = 66/204 (32%), Gaps = 49/204 (24%) Query: 67 VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110 V+L GP G+GK+ LA + ++ S + + + Sbjct: 207 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKANAPAI 266 Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 V +++ID + D + L + ++ +L+ A P L Sbjct: 267 VFVDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDVKGGVILIAATNRPDILDPAL 326 Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVKMFADRQIFIDKKL-- 197 PD+ RL+ V + P D L V + + L Sbjct: 327 LRPGRFDRQIAVDRPDMQGRLEILKVHQKGKPVAPDVDLGAVARRTPGFTGADLSNVLNE 386 Query: 198 AAYIVQRMERSLVFAEKLVDKMDN 221 AA + R ++ L+ + L + +D Sbjct: 387 AALLTARSDKKLIDNQALDEAIDR 410 >gi|270284161|ref|ZP_05965649.2| holliday junction DNA helicase RuvB [Bifidobacterium gallicum DSM 20093] gi|270277218|gb|EFA23072.1| holliday junction DNA helicase RuvB [Bifidobacterium gallicum DSM 20093] Length = 356 Score = 39.7 bits (92), Expect = 0.38, Method: Composition-based stats. Identities = 31/192 (16%), Positives = 64/192 (33%), Gaps = 45/192 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDK--------SRSTRFSNIAKSLDSILIDTRKPVLLE 114 P ++L GP G GK+ LA I +++ S + +D + + ++ Sbjct: 66 PPDHILLAGPPGLGKTTLAMIVANELGVPIRVTSGPAIQHAGDLASILSSLDAGEVLFID 125 Query: 115 DIDLLDFNDTQLFHIINSIHQYDSSLLMTARTF-PVSWGVCLPD---------------- 157 +I L +L +I + +M + S + LP Sbjct: 126 EIHRLPRAAEELLYI---AMEDFRVDVMVGKGPGASSIPLTLPRFTVIGATTREGMLPSP 182 Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID--------------KKLAAYIVQ 203 L +R + D+ L K+I + A + ++ ++A +++ Sbjct: 183 LRARFGFTAHLDFYPADE--LRKLIERSAAVLGLELEQGASQQLSLRSRGTPRIANRLLR 240 Query: 204 RMERSLVFAEKL 215 R+ R L Sbjct: 241 RV-RDWAIVHDL 251 >gi|241948885|ref|XP_002417165.1| 26S proteasome regulatory subunit 7, putative; CIM5 protein, putative; TAT-binding homolog 3, putative [Candida dubliniensis CD36] gi|223640503|emb|CAX44757.1| 26S proteasome regulatory subunit 7, putative [Candida dubliniensis CD36] Length = 444 Score = 39.7 bits (92), Expect = 0.38, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + ++L GP G+GK+ A ++++ +T I L + ++ E Sbjct: 219 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 270 >gi|156846924|ref|XP_001646348.1| hypothetical protein Kpol_1032p87 [Vanderwaltozyma polyspora DSM 70294] gi|156117023|gb|EDO18490.1| hypothetical protein Kpol_1032p87 [Vanderwaltozyma polyspora DSM 70294] Length = 464 Score = 39.7 bits (92), Expect = 0.38, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + ++L GP G+GK+ A ++++ +T I L + ++ E Sbjct: 239 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 290 >gi|149244794|ref|XP_001526940.1| 26S protease regulatory subunit 7 [Lodderomyces elongisporus NRRL YB-4239] gi|146449334|gb|EDK43590.1| 26S protease regulatory subunit 7 [Lodderomyces elongisporus NRRL YB-4239] Length = 431 Score = 39.7 bits (92), Expect = 0.38, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + ++L GP G+GK+ A ++++ +T I L + ++ E Sbjct: 222 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 273 >gi|126274173|ref|XP_001387450.1| protease subunit component [Scheffersomyces stipitis CBS 6054] gi|126213320|gb|EAZ63427.1| protease subunit component [Pichia stipitis CBS 6054] Length = 446 Score = 39.7 bits (92), Expect = 0.38, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + ++L GP G+GK+ A ++++ +T I L + ++ E Sbjct: 221 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 272 >gi|50422143|ref|XP_459634.1| DEHA2E07436p [Debaryomyces hansenii CBS767] gi|49655302|emb|CAG87864.1| DEHA2E07436p [Debaryomyces hansenii] Length = 446 Score = 39.7 bits (92), Expect = 0.38, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + ++L GP G+GK+ A ++++ +T I L + ++ E Sbjct: 221 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 272 >gi|50309131|ref|XP_454571.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49643706|emb|CAG99658.1| KLLA0E13773p [Kluyveromyces lactis] Length = 475 Score = 39.7 bits (92), Expect = 0.38, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + ++L GP G+GK+ A ++++ +T I L + ++ E Sbjct: 250 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 301 >gi|84394695|gb|AAQ17057.2| polyprotein [Sapovirus Mc2] Length = 2280 Score = 39.7 bits (92), Expect = 0.38, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLED 115 +IL GP G GK+ LA + T SN + +LD T V + D Sbjct: 477 IILTGPPGIGKTHLAQHLAAGFGKT--SNFSVTLDHHDSYTGNDVAIWD 523 >gi|58270374|ref|XP_572343.1| ATPase [Cryptococcus neoformans var. neoformans JEC21] gi|57228601|gb|AAW45036.1| ATPase, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 1159 Score = 39.7 bits (92), Expect = 0.38, Method: Composition-based stats. Identities = 9/46 (19%), Positives = 23/46 (50%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 +L GP G+GK+ LA + +S + + ++ + + + ++ Sbjct: 747 ALLFGPPGTGKTLLARAVAAESGARMLAIQPSDVNDMYVGEGEKLV 792 >gi|72163294|ref|YP_290951.1| Mername-AA223 peptidase [Thermobifida fusca YX] gi|71917026|gb|AAZ56928.1| Mername-AA223 peptidase. Metallo peptidase. MEROPS family M41 [Thermobifida fusca YX] Length = 682 Score = 39.7 bits (92), Expect = 0.38, Method: Composition-based stats. Identities = 30/196 (15%), Positives = 60/196 (30%), Gaps = 41/196 (20%) Query: 67 VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110 V+L GP G+GK+ LA + ++ S + + + Sbjct: 200 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKANAPAI 259 Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + D + L + ++ +L+ A P L Sbjct: 260 IFIDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDSRGGVILIAATNRPDILDPAL 319 Query: 156 PDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVFAE 213 L R VV PD + + ++ + + I +R A Sbjct: 320 --LRPGRFDRQIVV--DRPDLEGRKGILRVHAQ--GKPLGPDVDLDVIARRTP-GFTGA- 371 Query: 214 KLVDKMDNLALSRGMG 229 L + ++ AL Sbjct: 372 DLANVINEGALLTARR 387 >gi|50550451|ref|XP_502698.1| YALI0D11418p [Yarrowia lipolytica] gi|49648566|emb|CAG80886.1| YALI0D11418p [Yarrowia lipolytica] Length = 436 Score = 39.7 bits (92), Expect = 0.38, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + ++L GP G+GK+ A ++++ +T I L + ++ E Sbjct: 211 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 262 >gi|50287085|ref|XP_445972.1| hypothetical protein [Candida glabrata CBS 138] gi|49525278|emb|CAG58891.1| unnamed protein product [Candida glabrata] Length = 472 Score = 39.7 bits (92), Expect = 0.38, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + ++L GP G+GK+ A ++++ +T I L + ++ E Sbjct: 247 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 298 >gi|6322704|ref|NP_012777.1| Rpt1p [Saccharomyces cerevisiae S288c] gi|464862|sp|P33299|PRS7_YEAST RecName: Full=26S protease regulatory subunit 7 homolog; AltName: Full=Protein CIM5; AltName: Full=Tat-binding homolog 3 gi|313882|emb|CAA51973.1| YTA3 [Saccharomyces cerevisiae] gi|410510|emb|CAA80470.1| putative ATPase [Saccharomyces cerevisiae] gi|486249|emb|CAA81986.1| YTA3 [Saccharomyces cerevisiae] gi|151941662|gb|EDN60024.1| ATPase [Saccharomyces cerevisiae YJM789] gi|190409693|gb|EDV12958.1| 26S protease subunit component [Saccharomyces cerevisiae RM11-1a] gi|256271083|gb|EEU06182.1| Rpt1p [Saccharomyces cerevisiae JAY291] gi|285813120|tpg|DAA09017.1| TPA: Rpt1p [Saccharomyces cerevisiae S288c] gi|323332722|gb|EGA74127.1| Rpt1p [Saccharomyces cerevisiae AWRI796] gi|738777|prf||2001430A 26S protease Length = 467 Score = 39.7 bits (92), Expect = 0.38, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + ++L GP G+GK+ A ++++ +T I L + ++ E Sbjct: 242 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 293 >gi|68480234|ref|XP_715926.1| likely 26S proteasome regulatory particle ATPase Rpt1p [Candida albicans SC5314] gi|68480347|ref|XP_715876.1| likely 26S proteasome regulatory particle ATPase Rpt1p [Candida albicans SC5314] gi|46437519|gb|EAK96864.1| likely 26S proteasome regulatory particle ATPase Rpt1p [Candida albicans SC5314] gi|46437571|gb|EAK96915.1| likely 26S proteasome regulatory particle ATPase Rpt1p [Candida albicans SC5314] gi|238879018|gb|EEQ42656.1| 26S protease regulatory subunit 7 [Candida albicans WO-1] Length = 444 Score = 39.7 bits (92), Expect = 0.38, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + ++L GP G+GK+ A ++++ +T I L + ++ E Sbjct: 219 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 270 >gi|330965615|gb|EGH65875.1| recombination factor protein RarA [Pseudomonas syringae pv. actinidiae str. M302091] Length = 440 Score = 39.7 bits (92), Expect = 0.38, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 51/150 (34%), Gaps = 22/150 (14%) Query: 57 DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 ++ +I GP G GK+ LA + + S + F ++ L + + + + Sbjct: 40 EALEQGALHSMIFWGPPGVGKTTLARLLAKVSDAH-FETVSAVLAGVKEIRQAVEVAKQQ 98 Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162 T LF H N Q D +L+ T L SR Sbjct: 99 AGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154 Query: 163 KAATVVKISLPDDDFLEKVI-VKMFADRQI 191 A V + D+ L K++ + DR + Sbjct: 155 --ARVYVLKSLDEAALRKLVNRALTEDRGL 182 >gi|317147000|ref|XP_001821812.2| spastin [Aspergillus oryzae RIB40] Length = 958 Score = 39.7 bits (92), Expect = 0.38, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 17/30 (56%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 ++L GP G+GK+ LA + +S +T Sbjct: 687 PGLLLYGPPGTGKTLLAKAVARESGATVLE 716 >gi|294653351|gb|ADF28546.1| putative transposase [Paracoccus koreensis] Length = 242 Score = 39.7 bits (92), Expect = 0.38, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 22/110 (20%) Query: 64 SRVVILVGPSGSGKSCLA-NIWSD------KSRSTRFSNIAKSLDSILID---TRKPVLL 113 R V+L+G +G+GKS LA +I + R ++ LD+ R LL Sbjct: 98 QRNVVLIGGTGTGKSHLAVSIARACIRRGKRGRFFNVVDLVNKLDAEARADRQGRTADLL 157 Query: 114 EDIDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 +D L ++ LFH+I+ +++ +S+++T W Sbjct: 158 CRLDFLILDELGYLPFAQTGGQLLFHLISRLYER-TSIIVTTNLDFGEWP 206 >gi|291234534|ref|XP_002737206.1| PREDICTED: fidgetin-like protein 1-like [Saccoglossus kowalevskii] Length = 687 Score = 39.7 bits (92), Expect = 0.38, Method: Composition-based stats. Identities = 15/40 (37%), Positives = 24/40 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P + ++L GP G+GK+ + + +S +T FS A SL S Sbjct: 445 PPKGLLLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS 484 >gi|269955154|ref|YP_003324943.1| ABC transporter-like protein [Xylanimonas cellulosilytica DSM 15894] gi|269303835|gb|ACZ29385.1| ABC transporter related protein [Xylanimonas cellulosilytica DSM 15894] Length = 302 Score = 39.7 bits (92), Expect = 0.38, Method: Composition-based stats. Identities = 38/178 (21%), Positives = 66/178 (37%), Gaps = 43/178 (24%) Query: 13 PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPS--WPSRVVILV 70 P + ++ QP EQ P +RD + + A E VR +D R+ ++ Sbjct: 3 PARGRHAQPDASSEQ-----PPAQASARDLVKTYGAGETEVRALDGVSVDFARGRLTAIM 57 Query: 71 GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ----- 125 GPSGSGKS L + + + T V+++D+++ + Sbjct: 58 GPSGSGKSTLMHC----------------MAGLDTPTSGTVVVDDVEISSMSQRALTRLR 101 Query: 126 ------LFHIINSI----HQYDSSL-LMTARTFP-VSWGVCLPD---LCSRLKAATVV 168 +F N + + + +L L AR +W + D L SRL+ Sbjct: 102 RTRIGFVFQAYNLVPTLTAEENITLPLDIARAPVDPAWFDAVVDAVGLRSRLRHRPNA 159 >gi|227505941|ref|ZP_03935990.1| cell division protein FtsH [Corynebacterium striatum ATCC 6940] gi|227197463|gb|EEI77511.1| cell division protein FtsH [Corynebacterium striatum ATCC 6940] Length = 750 Score = 39.7 bits (92), Expect = 0.38, Method: Composition-based stats. Identities = 30/198 (15%), Positives = 67/198 (33%), Gaps = 43/198 (21%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110 R V+L GP G+GK+ LA + ++ FS + + Sbjct: 201 RGVLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFKQAKENSP 260 Query: 111 --VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGV 153 + +++ID + + L + ++ + +L+ A P Sbjct: 261 CIIFVDEIDAVGRQRGSGTGGGHDEREQTLNQLLVEMDGFGDREGVILIAATNRPDILDP 320 Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L+ + ++ PD E+++ D+ + + +A + +R + Sbjct: 321 AL------LRPGRFDRQIPVTNPDLAGREEILRVHAKDKPLAKEVDVAQ-LAKRTA-GMS 372 Query: 211 FAEKLVDKMDNLALSRGM 228 A L + ++ AL Sbjct: 373 GA-DLANVLNEAALLTAR 389 >gi|207343610|gb|EDZ71027.1| YKL145Wp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 271 Score = 39.7 bits (92), Expect = 0.38, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + ++L GP G+GK+ A ++++ +T I L + ++ E Sbjct: 46 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 97 >gi|88602110|ref|YP_502288.1| AAA family ATPase, CDC48 subfamily protein [Methanospirillum hungatei JF-1] gi|88187572|gb|ABD40569.1| AAA family ATPase, CDC48 subfamily [Methanospirillum hungatei JF-1] Length = 801 Score = 39.7 bits (92), Expect = 0.38, Method: Composition-based stats. Identities = 38/227 (16%), Positives = 73/227 (32%), Gaps = 49/227 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106 P + ++L GP G+GK+ LA + KSR S + ++ Sbjct: 487 PPKGILLFGPPGTGKTLLAKAVAAKSRMNFISVKGPELLSKWVGESEKQVREAFRKARQS 546 Query: 107 TRKPVLLEDIDLLDFND--------------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 + ++ID L +Q+ ++ + + ++M A P Sbjct: 547 APSIIFFDEIDALVQQRGQQHTNSRVGESVLSQILTEMDGVEELSGVVIMAATNRPDLLD 606 Query: 153 VCLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY-IVQRMERSL- 209 L L RL+ + I P+ + + ++ D +D+ Y + R R Sbjct: 607 PAL--LRPGRLE--KHIYIKPPNLNGRKAILKIYLRDLGTLLDEN-IDYDAIAREMRYFV 661 Query: 210 -VFAEKLV-----DKMDNLALSRGMG-----ITRSLAAEVLKETQQC 245 V + +D++ IT E+L Q Sbjct: 662 GADIHAFVREVKMNLLDDVFTKTKRPEDVPRITTEYLKEILTHMQGT 708 Score = 37.4 bits (86), Expect = 1.7, Method: Composition-based stats. Identities = 9/28 (32%), Positives = 15/28 (53%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS 94 V+L GP G+GK+ LA + + + Sbjct: 219 VLLYGPPGTGKTLLARAVASEVDAHFIP 246 >gi|328861741|gb|EGG10844.1| ATPase family protein [Melampsora larici-populina 98AG31] Length = 642 Score = 39.7 bits (92), Expect = 0.38, Method: Composition-based stats. Identities = 11/27 (40%), Positives = 18/27 (66%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSR 89 P R ++L GP G+GK+ LA+I + + Sbjct: 134 PPRGILLYGPPGTGKTLLASIVAKSTG 160 >gi|320103028|ref|YP_004178619.1| heme-binding protein [Isosphaera pallida ATCC 43644] gi|319750310|gb|ADV62070.1| heme-binding protein [Isosphaera pallida ATCC 43644] Length = 1081 Score = 39.7 bits (92), Expect = 0.38, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 42/113 (37%), Gaps = 10/113 (8%) Query: 132 SIHQYDSSLLMTARTFPVSWGV---CLPDL----CSRLKAATVVKISLPDDDFLEKV-IV 183 + + LL+ AR W LPDL S+L A + L + + Sbjct: 828 ATRSRAADLLVNARLTAAQWRELVERLPDLGPIEVSKLLALFETHLDET--AALRALEQI 885 Query: 184 KMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAA 236 + DR ++L ++ R + +L +++D +R I R LA Sbjct: 886 ETHRDRWRVRPEELRDRFAKQSPRVIAEVRRLAERLDAANAARVERINRLLAR 938 >gi|288958488|ref|YP_003448829.1| cell division protease [Azospirillum sp. B510] gi|288910796|dbj|BAI72285.1| cell division protease [Azospirillum sp. B510] Length = 593 Score = 39.7 bits (92), Expect = 0.38, Method: Composition-based stats. Identities = 28/194 (14%), Positives = 62/194 (31%), Gaps = 41/194 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 ++LVGP G+GK+ LA + ++ F+ + + Sbjct: 190 LLLVGPPGTGKTMLAKAAAGEAGVPFFAASGSDFVEMFVGLGAARVRNLFKTARASAPCI 249 Query: 111 VLLEDIDLLDF----------NDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCLPD 157 + +++ID L + L + ++ I + + +++ A + Sbjct: 250 LFIDEIDALAGKRGESTSHSEREQTLNQLLVEMDGIVEGGALVVIAATNRAEMLDAAV-- 307 Query: 158 LCSRLKAA---TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 L+ + + LPD E ++ + + + V R A Sbjct: 308 ----LRPGRFDRHIHVGLPDLAGREAILAVHAGR--LTLAPDVCVRTVARGTPGFSGA-D 360 Query: 215 LVDKMDNLALSRGM 228 L + + ALS Sbjct: 361 LANLTNEAALSAAR 374 >gi|207722958|ref|YP_002253387.1| isrso6-transposase orfb protein [Ralstonia solanacearum MolK2] gi|206588146|emb|CAQ18721.1| isrso6-transposase orfb protein [Ralstonia solanacearum MolK2] Length = 258 Score = 39.7 bits (92), Expect = 0.38, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 47/130 (36%), Gaps = 30/130 (23%) Query: 51 QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110 ++ I+ + V+L+GPSG GK+ +A+ + ++ + +++ Sbjct: 89 ASLAFIERAEN-----VVLLGPSGVGKTHIASALAYRATQAGIKTRFITAADLMMQLATA 143 Query: 111 -------------------VLLEDIDLLDF--NDTQLFHIINSI--HQYDSSLLMTARTF 147 +++++I L F + LF N + ++++T+ Sbjct: 144 RQQNRLREFFNRAVIGPRLLVIDEIGYLPFGREEADLF--FNVVAKRYERGAIVLTSNLP 201 Query: 148 PVSWGVCLPD 157 W D Sbjct: 202 FTQWATAFAD 211 >gi|156390974|ref|XP_001635544.1| predicted protein [Nematostella vectensis] gi|156222639|gb|EDO43481.1| predicted protein [Nematostella vectensis] Length = 417 Score = 39.7 bits (92), Expect = 0.38, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 1/58 (1%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120 P R V+L GP G GK+ LA + + + + + P ++ D+ L Sbjct: 197 PPRGVLLYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYL-GEGPRMVRDVFRLA 253 >gi|119494626|ref|ZP_01624747.1| recombination protein [Lyngbya sp. PCC 8106] gi|119452050|gb|EAW33267.1| recombination protein [Lyngbya sp. PCC 8106] Length = 331 Score = 39.7 bits (92), Expect = 0.38, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 64 SRVVILVGPSGSGKSCLA-NIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 RV+ + GP SGK+ LA + ++ R+ + + L + VL DI+ L + Sbjct: 32 GRVIEIYGPESSGKTTLALHAIAEVQRAGGVAAF-VDAEHALDPSYASVLGVDIENLLVS 90 Query: 123 D 123 Sbjct: 91 Q 91 >gi|110741581|dbj|BAE98739.1| hypothetical protein [Arabidopsis thaliana] Length = 751 Score = 39.7 bits (92), Expect = 0.38, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 21/32 (65%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P R ++L GP G+GK+ LA ++++ ++ + Sbjct: 550 PCRGILLFGPPGTGKTMLAKAIANEAGASFIN 581 >gi|157864488|ref|XP_001680954.1| hypothetical protein [Leishmania major strain Friedlin] gi|68124247|emb|CAJ07009.1| conserved hypothetical protein [Leishmania major strain Friedlin] Length = 4873 Score = 39.7 bits (92), Expect = 0.38, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 2/66 (3%) Query: 50 EQAVRLIDSWPSW--PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107 A L++ + SW R V+LVGP +GK+ L W+ S S + Sbjct: 1640 AAADALLERFTSWMNVHRRVLLVGPPFAGKTRLWRTWAGSQSPLIVSLSLISAADFYGTS 1699 Query: 108 RKPVLL 113 +P L Sbjct: 1700 TEPSFL 1705 >gi|56418597|ref|YP_145915.1| cell-division protein and general stress protein [Geobacillus kaustophilus HTA426] gi|56378439|dbj|BAD74347.1| cell-division protein and general stress protein (class III heat-shock) [Geobacillus kaustophilus HTA426] Length = 632 Score = 39.7 bits (92), Expect = 0.38, Method: Composition-based stats. Identities = 30/197 (15%), Positives = 62/197 (31%), Gaps = 43/197 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ FS + + Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFETAKKNAPCI 257 Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + + L + ++ + + +++ A P L Sbjct: 258 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFNGNEGIIIIAATNRPDILDPAL 317 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 L+ + + PD E V+ ++ + L I R A Sbjct: 318 ------LRPGRFDRQITVDRPDVKGREAVLRVHARNKPLDESVDLKT-IAMRTP-GFSGA 369 Query: 213 EKLVDKMDNLALSRGMG 229 L + ++ AL Sbjct: 370 -DLENLLNEAALVAARR 385 >gi|58271254|ref|XP_572783.1| ATPase [Cryptococcus neoformans var. neoformans JEC21] gi|134114578|ref|XP_773997.1| hypothetical protein CNBH0440 [Cryptococcus neoformans var. neoformans B-3501A] gi|50256627|gb|EAL19350.1| hypothetical protein CNBH0440 [Cryptococcus neoformans var. neoformans B-3501A] gi|57229042|gb|AAW45476.1| ATPase, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 439 Score = 39.7 bits (92), Expect = 0.38, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 24/38 (63%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P R ++L GP G+GKS LA + +++ST FS + L Sbjct: 165 PWRGILLYGPPGTGKSYLAKAVATEAKSTFFSVSSSDL 202 >gi|330990632|ref|ZP_08314589.1| Insertion sequence IS21 putative ATP-binding protein [Gluconacetobacter sp. SXCC-1] gi|329762334|gb|EGG78821.1| Insertion sequence IS21 putative ATP-binding protein [Gluconacetobacter sp. SXCC-1] Length = 259 Score = 39.7 bits (92), Expect = 0.39, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 47/108 (43%), Gaps = 23/108 (21%) Query: 67 VILVGPSGSGKSCLANIWS--------DKSRSTRFSNIAKSLDSILIDTRKPVLLE---D 115 V+L+G G+GK+ LA + K+R ++ +L+ R + + Sbjct: 105 VVLIGGPGTGKTHLATALAIQAITHHRKKARFWSTVDLVNALEQEKTANRAGQIADRLLR 164 Query: 116 IDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 +DL+ ++ LFH+++ +++ +S+++T WG Sbjct: 165 LDLVILDELGYLPFSASGGALLFHLLSRLYER-TSVIITTNLSFSEWG 211 >gi|328870868|gb|EGG19240.1| 26S proteasome ATPase 1 subunit [Dictyostelium fasciculatum] Length = 440 Score = 39.7 bits (92), Expect = 0.39, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL G G+GK+ LA ++++ +T + L + ++ E Sbjct: 218 PPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 269 >gi|330805787|ref|XP_003290859.1| 26S proteasome ATPase 1 subunit [Dictyostelium purpureum] gi|325078984|gb|EGC32607.1| 26S proteasome ATPase 1 subunit [Dictyostelium purpureum] Length = 440 Score = 39.7 bits (92), Expect = 0.39, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL G G+GK+ LA ++++ +T + L + ++ E Sbjct: 217 PPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 268 >gi|323138890|ref|ZP_08073952.1| IstB domain protein ATP-binding protein [Methylocystis sp. ATCC 49242] gi|322395834|gb|EFX98373.1| IstB domain protein ATP-binding protein [Methylocystis sp. ATCC 49242] Length = 243 Score = 39.7 bits (92), Expect = 0.39, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 22/110 (20%) Query: 64 SRVVILVGPSGSGKSCLA-NIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110 R ++LVG +G+GK+ LA I R++ ++D + + Sbjct: 99 QRNIVLVGGTGTGKTHLAIAIARSCIRASLRGRFFNTVDLVNRLEAETRAGRQGRIADYL 158 Query: 111 -----VLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWG 152 V+L+++ L F LFH+++ +++ +S+++T W Sbjct: 159 TRMDFVILDELGYLPFAQAGGQLLFHLVSRLYER-TSVIVTTNLAFGEWP 207 >gi|313902545|ref|ZP_07835946.1| membrane protease FtsH catalytic subunit [Thermaerobacter subterraneus DSM 13965] gi|313467231|gb|EFR62744.1| membrane protease FtsH catalytic subunit [Thermaerobacter subterraneus DSM 13965] Length = 614 Score = 39.7 bits (92), Expect = 0.39, Method: Composition-based stats. Identities = 30/197 (15%), Positives = 62/197 (31%), Gaps = 43/197 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110 V+L GP G+GK+ +A + ++ S + + + Sbjct: 195 VLLYGPPGTGKTHMARAVAGEAGVPFYYISGSDFVEMFVGVGASRVRDLFEQAKRNAPAI 254 Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 V +++ID + + L + ++ + ++M A P L Sbjct: 255 VFIDEIDAVGRQRGAGYGGGHDEREQTLNQLLVEMDGFGTNEGIIVMAATNRPDVLDPAL 314 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 L+ + I PD E ++ + + D LA ++ R A Sbjct: 315 ------LRPGRFDRQIVIDRPDLVAREAILKVHTRSKPLAPDVDLA--LLARRTPGFTGA 366 Query: 213 EKLVDKMDNLALSRGMG 229 L + ++ AL Sbjct: 367 -DLENLVNEAALLAARR 382 >gi|301777672|ref|XP_002924254.1| PREDICTED: fidgetin-like [Ailuropoda melanoleuca] Length = 748 Score = 39.7 bits (92), Expect = 0.39, Method: Composition-based stats. Identities = 36/187 (19%), Positives = 68/187 (36%), Gaps = 39/187 (20%) Query: 50 EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109 A + + P R ++L GP G+GK+ L + + +T F L + + + Sbjct: 498 SDAFSGLTASP----RSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWLGEAE 553 Query: 110 PVL----------------LEDIDLLDFNDTQLFH-IINSIH-------------QYDSS 139 ++ + DID+L + H +N + D Sbjct: 554 KIIHASFLVARCRQPSVIFVSDIDMLLSSQVSEEHSPVNRMRTEFLMQLDTVLTSAEDQI 613 Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199 +++ A + P L R + I LPD ++IV++ + ++ K A Sbjct: 614 VVICATSKPEEIDESL-----RRYFMKRLLIPLPDSTARHQIIVQLLSQHNYCLNDKEFA 668 Query: 200 YIVQRME 206 +VQR E Sbjct: 669 LLVQRTE 675 >gi|281208335|gb|EFA82511.1| 26S proteasome ATPase 1 subunit [Polysphondylium pallidum PN500] Length = 442 Score = 39.7 bits (92), Expect = 0.39, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL G G+GK+ LA ++++ +T + L + ++ E Sbjct: 220 PPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 271 >gi|225684695|gb|EEH22979.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03] Length = 994 Score = 39.7 bits (92), Expect = 0.39, Method: Composition-based stats. Identities = 9/25 (36%), Positives = 18/25 (72%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSR 89 +V++L GP G GK+ LA++ + ++ Sbjct: 321 KVLVLTGPPGLGKTTLAHVCARQAG 345 >gi|221127943|ref|XP_002165829.1| PREDICTED: similar to 26S protease regulatory subunit [Hydra magnipapillata] Length = 441 Score = 39.7 bits (92), Expect = 0.39, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL G G+GK+ LA ++++ +T + L + ++ E Sbjct: 219 PPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 270 >gi|182417016|ref|ZP_02948395.1| DNA replication protein DnaC [Clostridium butyricum 5521] gi|237669638|ref|ZP_04529616.1| DNA replication protein DnaC [Clostridium butyricum E4 str. BoNT E BL5262] gi|182379113|gb|EDT76616.1| DNA replication protein DnaC [Clostridium butyricum 5521] gi|237654872|gb|EEP52434.1| dnaC family protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 326 Score = 39.7 bits (92), Expect = 0.39, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 45/115 (39%), Gaps = 27/115 (23%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTR-----------------K 109 ++ G GSGK+ L+ S + + K+ D ++ + R Sbjct: 186 LLFYGNPGSGKTYLSYCISKNILDDGYLVVYKTSDELIQNLRDIRFNNNTNLESLLFDCD 245 Query: 110 PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161 ++++D+ N+ +LF+I+N ++++ + LPD+ R Sbjct: 246 LLIIDDLGAEHLNEFSIAELFNILNRKILNKKKMIIST-------NLTLPDIVKR 293 >gi|167629899|ref|YP_001680398.1| holliday junction DNA helicase ruvb [Heliobacterium modesticaldum Ice1] gi|238687888|sp|B0TF70|RUVB_HELMI RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|167592639|gb|ABZ84387.1| holliday junction DNA helicase ruvb [Heliobacterium modesticaldum Ice1] Length = 370 Score = 39.7 bits (92), Expect = 0.39, Method: Composition-based stats. Identities = 36/207 (17%), Positives = 73/207 (35%), Gaps = 31/207 (14%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P V+L GP G GK+ LA I + + +++ L+ +D+L + Sbjct: 52 PLDHVLLYGPPGLGKTTLAQIIAQELGVQLRVTSGPAIERPGDLAAILTNLQPMDVLFID 111 Query: 123 DTQLFHIINSIHQYDSS---------LLMTARTFPVSWGVCLPD---------------- 157 + H +N + +++ S + LP Sbjct: 112 EI---HRLNRAVEEVLYPAMEDFCLDIVIGKGPAARSIRIDLPRFTLVGATTRAGMLTSP 168 Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 L R ++ PD+ LE +I++ + + + A I R + A +L+ Sbjct: 169 LRDRFGVIHRLEYYRPDE--LEFIILRAATILGVTAEPEGAREIALRSRGTPRIANRLLK 226 Query: 218 KM-DNLALSRGMGITRSLAAEVLKETQ 243 ++ D + +T +A E L+ + Sbjct: 227 RVRDYAQVLSDGVVTGEVAREALRRLE 253 >gi|126728035|ref|ZP_01743851.1| IstB-like ATP-binding protein [Sagittula stellata E-37] gi|126711000|gb|EBA10050.1| IstB-like ATP-binding protein [Sagittula stellata E-37] Length = 233 Score = 39.7 bits (92), Expect = 0.39, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 22/110 (20%) Query: 64 SRVVILVGPSGSGKSCLA-NIWSD------KSRSTRFSNIAKSLDSILID---TRKPVLL 113 R V+L G +G+GKS LA +I + R ++ LD+ R LL Sbjct: 89 QRNVVLFGGTGTGKSHLAVSIARACIRRGKRGRFFNVVDLVNKLDAEARADRQGRTADLL 148 Query: 114 EDIDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 +D L ++ LFH+I+ +++ +S+++T W Sbjct: 149 CRLDFLILDELGYLPFAQTGGQLLFHLISRLYER-TSIIVTTNLDFGEWP 197 >gi|110804893|ref|YP_688413.1| recombination factor protein RarA [Shigella flexneri 5 str. 8401] gi|110614441|gb|ABF03108.1| putative polynucleotide enzyme [Shigella flexneri 5 str. 8401] Length = 447 Score = 39.7 bits (92), Expect = 0.39, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 10/76 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G+GK+ LA + + + + R S + + I + + T Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERA----RQNRNAGRRT 108 Query: 125 QLF----HIINSIHQY 136 LF H N Q Sbjct: 109 SLFVDEVHRFNKSQQD 124 >gi|147920445|ref|YP_685764.1| cell division cycle protein 48 [uncultured methanogenic archaeon RC-I] gi|110621160|emb|CAJ36438.1| cell division cycle protein 48 [uncultured methanogenic archaeon RC-I] Length = 758 Score = 39.7 bits (92), Expect = 0.39, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 20/34 (58%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 V+L GP G+GK+ LA +++S++ + L Sbjct: 520 VLLYGPPGTGKTLLAKAIANESQANFITAKGSDL 553 >gi|9651743|gb|AAF91248.1|AF227504_1 proteasome regulatory ATPase subunit 6 [Trypanosoma brucei] Length = 408 Score = 39.7 bits (92), Expect = 0.39, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 20/48 (41%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 V+L GP G+GK+ LA + + T L I ++ E Sbjct: 187 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGAELVQKYIGEGARLVRE 234 >gi|66826743|ref|XP_646726.1| 26S proteasome ATPase 1 subunit [Dictyostelium discoideum AX4] gi|74997381|sp|Q55BV5|PRS4_DICDI RecName: Full=26S protease regulatory subunit 4 homolog; AltName: Full=Tat-binding protein alpha; Short=DdTBPalpha gi|60474805|gb|EAL72742.1| 26S proteasome ATPase 1 subunit [Dictyostelium discoideum AX4] Length = 439 Score = 39.7 bits (92), Expect = 0.39, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL G G+GK+ LA ++++ +T + L + ++ E Sbjct: 217 PPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 268 >gi|313667022|gb|ADR72961.1| putative regulatory protein [Streptomyces sp. OH-4156] Length = 1083 Score = 39.7 bits (92), Expect = 0.39, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 41/131 (31%), Gaps = 25/131 (19%) Query: 66 VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND-- 123 VV+L G GSG++ +A L D + + D+ ++ Sbjct: 261 VVLLHGEPGSGRT----------------ALAVRAAHALRDQFRGACVVDLRGGARDERP 304 Query: 124 ----TQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR-LKAATVVKISLPDDDFL 178 L H++N + LL L +L R L V I DD Sbjct: 305 LATREALLHLLNRLGAPRERLLFREGATADQQVARLTELYQRQLTGVPVTVI--LDDAVD 362 Query: 179 EKVIVKMFADR 189 + + +R Sbjct: 363 AAQVRALLPER 373 >gi|312084249|ref|XP_003144198.1| hypothetical protein LOAG_08620 [Loa loa] gi|307760641|gb|EFO19875.1| hypothetical protein LOAG_08620 [Loa loa] Length = 324 Score = 39.7 bits (92), Expect = 0.39, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 21/43 (48%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109 V+LVGP G+GK+ LA + +++ F D + + Sbjct: 266 VLLVGPPGTGKTLLAKAIAGEAQVPFFQASGSEFDELFVGQGA 308 >gi|304311214|ref|YP_003810812.1| Uncharacterized ATPase related to the helicase subunit of the Holliday junction resolvase [gamma proteobacterium HdN1] gi|301796947|emb|CBL45160.1| Uncharacterized ATPase related to the helicase subunit of the Holliday junction resolvase [gamma proteobacterium HdN1] Length = 467 Score = 39.7 bits (92), Expect = 0.39, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 53/174 (30%), Gaps = 34/174 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-VLLEDID--LLDFND 123 +IL GP G GK+ LA + +L ++L ++ +++ Sbjct: 52 MILWGPPGVGKTTLA-----MLMANYIEAQFITLSAVLSGVKEIRAAIDEARHYRQQGRQ 106 Query: 124 TQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVK 169 LF H N Q D +++ T L SR A V Sbjct: 107 CLLFVDEVHRFNKSQQDAFLPHIEDGTVIFVGATTENPSFELNGA---LLSR---ARVYV 160 Query: 170 ISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLVD 217 + D + + D I + + I + + + A L++ Sbjct: 161 LKPLDASAITARLRSAMQDARGLAGAGIRAEDAILETIARAADGDMRRAYNLLE 214 >gi|297796103|ref|XP_002865936.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata] gi|297311771|gb|EFH42195.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata] Length = 830 Score = 39.7 bits (92), Expect = 0.39, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 21/32 (65%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P R ++L GP G+GK+ LA ++++ ++ + Sbjct: 550 PCRGILLFGPPGTGKTMLAKAIANEAGASFIN 581 >gi|294852541|ref|ZP_06793214.1| ATPase [Brucella sp. NVSL 07-0026] gi|294821130|gb|EFG38129.1| ATPase [Brucella sp. NVSL 07-0026] Length = 437 Score = 39.7 bits (92), Expect = 0.39, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 59/181 (32%), Gaps = 28/181 (15%) Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDID 117 S ++ GP G+GK+ +A + + ++ + S I + + Sbjct: 49 ASGSLGSMVFWGPPGTGKTTVARLLAGETDLAFEQISAIFSGVADLKRVFEAA----RAR 104 Query: 118 LLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLK 163 + T LF H N + + +L+ T L SR Sbjct: 105 RMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVILIGATTENPSFELNAA---LLSR-- 159 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 A V+ D + + ++ + + +D + A +++ + A L +++ Sbjct: 160 -ARVLTFHPHDSESIATLLKRAEEQEGQALPLDDEARASLIRMADGDGRAALTLAEEVWR 218 Query: 222 L 222 Sbjct: 219 A 219 >gi|257440691|ref|ZP_05616446.1| replicative DNA helicase [Faecalibacterium prausnitzii A2-165] gi|257196864|gb|EEU95148.1| replicative DNA helicase [Faecalibacterium prausnitzii A2-165] Length = 170 Score = 39.7 bits (92), Expect = 0.39, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 54/149 (36%), Gaps = 32/149 (21%) Query: 52 AVRLIDSWPS--WPSRVVILVGPSGSGKSCLANIWS----DKSRSTRFSNIAKSLDSILI 105 A R ++ W + + + L G G+GKS LA + ++ +N A+ L+ + Sbjct: 4 AHRYVEQWQTMRAENLGLFLWGGVGTGKSFLAGCIANALIEQEVPVHMTNFARILNELNS 63 Query: 106 DTRK------------PVLLEDIDLLDFNDTQLFHIINSI---HQYDSSLLMTARTFPVS 150 ++++D + + L + N ++ L++T Sbjct: 64 SFSGRNEVVDKLCCYPLLVIDDFGMERGTEYALEQVYNIADSRYRSRKPLIVTT------ 117 Query: 151 WGVCLPDLCSRLKAATVVKISLPDDDFLE 179 + L ++ R + +I D LE Sbjct: 118 -NLTLDEMR-RPQDTPHARIY---DRLLE 141 >gi|294884174|ref|XP_002771115.1| 26S protease regulatory subunit, putative [Perkinsus marinus ATCC 50983] gi|239874368|gb|EER02931.1| 26S protease regulatory subunit, putative [Perkinsus marinus ATCC 50983] Length = 253 Score = 39.7 bits (92), Expect = 0.39, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 13/80 (16%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P R V+L GP G+GKS LA+ +++ + + + L++ +L Sbjct: 144 PPRGVLLYGPPGTGKSLLASAVAEELEAAGTAIHVE-------------LVKSTELTTKG 190 Query: 123 DTQLFHIINSIHQYDSSLLM 142 + + + + L+ Sbjct: 191 EAAVHSLFARCRDSGLASLI 210 >gi|197294568|ref|YP_001799109.1| Putative peptidase M41 cell division protein, fragment [Candidatus Phytoplasma australiense] gi|171853895|emb|CAM11857.1| Putative peptidase M41 cell division protein, fragment [Candidatus Phytoplasma australiense] Length = 2026 Score = 39.7 bits (92), Expect = 0.39, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 P + V+L GP G+GK+ LA + ++ F + S S P L+ D+ Sbjct: 1310 PPKGVLLYGPPGTGKTFLAKAIAKEAN-LPFFALNSSDFSKSYLGEGPKLINDV 1362 >gi|158422152|ref|YP_001523444.1| FtsH peptidase [Azorhizobium caulinodans ORS 571] gi|158329041|dbj|BAF86526.1| FtsH peptidase [Azorhizobium caulinodans ORS 571] Length = 640 Score = 39.7 bits (92), Expect = 0.39, Method: Composition-based stats. Identities = 33/199 (16%), Positives = 65/199 (32%), Gaps = 43/199 (21%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110 R V+LVGP G+GK+ LA + ++ F+ + + Sbjct: 190 RGVLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAP 249 Query: 111 --VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGV 153 + +++ID + D + L + ++ + +L+ A P Sbjct: 250 CIIFIDEIDAVGRHRGAGLGGGNDEREQTLNQLLVEMDGFEANEGIILIAATNRPDVLDP 309 Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L+ V + PD E+++ R+I I + ++ R Sbjct: 310 AL------LRPGRFDRQVVVPNPDVVGREQILKVHA--RKIPIAPDVNLKVIARGTPGFS 361 Query: 211 FAEKLVDKMDNLALSRGMG 229 A L + + AL Sbjct: 362 GA-DLANLCNEAALMAARR 379 >gi|167034603|ref|YP_001669834.1| recombination factor protein RarA [Pseudomonas putida GB-1] gi|166861091|gb|ABY99498.1| AAA ATPase central domain protein [Pseudomonas putida GB-1] Length = 441 Score = 39.7 bits (92), Expect = 0.39, Method: Composition-based stats. Identities = 34/210 (16%), Positives = 74/210 (35%), Gaps = 32/210 (15%) Query: 57 DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 ++ +I GP G GK+ LA + + + F ++ L + + + + Sbjct: 40 EALEQGALHSMIFWGPPGVGKTTLARLLAQFCDAH-FETVSAVLAGVKEIRQAVEVAKQQ 98 Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162 T LF H N Q D +LL T L SR Sbjct: 99 AGQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTLLFIGATTENPSFELNNA---LLSR- 154 Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLV 216 A V + D+ L K++ + + R + + + ++ + +++ Sbjct: 155 --ARVYVLKSLDEAALRKLVNRALTEERGLGKRNLRVGDEAFKMLMAAAD---GDGRRML 209 Query: 217 DKMDNLA-LSR-GMGITRSLAAEVLKETQQ 244 + ++N + L+ G I + +L ++++ Sbjct: 210 NFLENASDLAEDGSEIDVEMLQSLLGDSRR 239 >gi|49258183|gb|AAH73644.1| Psmc6 protein [Xenopus laevis] Length = 392 Score = 39.7 bits (92), Expect = 0.39, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + ++ S+ I ++ E Sbjct: 169 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 220 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 221 ------MFNYARDHQ 229 >gi|195539395|ref|NP_002797.3| 26S protease regulatory subunit 10B [Homo sapiens] gi|73963837|ref|XP_535701.2| PREDICTED: similar to proteasome 26S ATPase subunit 6 [Canis familiaris] gi|114653051|ref|XP_001159476.1| PREDICTED: 26S protease regulatory subunit 10B isoform 2 [Pan troglodytes] gi|291403875|ref|XP_002718294.1| PREDICTED: proteasome 26S ATPase subunit 6 [Oryctolagus cuniculus] gi|296215034|ref|XP_002753956.1| PREDICTED: 26S protease regulatory subunit S10B [Callithrix jacchus] gi|297695107|ref|XP_002824794.1| PREDICTED: 26S protease regulatory subunit S10B-like [Pongo abelii] gi|332237110|ref|XP_003267746.1| PREDICTED: 26S protease regulatory subunit 10B [Nomascus leucogenys] Length = 403 Score = 39.7 bits (92), Expect = 0.39, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + ++ S+ I ++ E Sbjct: 180 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 231 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 232 ------MFNYARDHQ 240 >gi|51891264|ref|YP_073955.1| cell division protein [Symbiobacterium thermophilum IAM 14863] gi|81389821|sp|Q67T82|FTSH2_SYMTH RecName: Full=ATP-dependent zinc metalloprotease FtsH 2 gi|51854953|dbj|BAD39111.1| cell division protein [Symbiobacterium thermophilum IAM 14863] Length = 587 Score = 39.7 bits (92), Expect = 0.39, Method: Composition-based stats. Identities = 35/215 (16%), Positives = 71/215 (33%), Gaps = 48/215 (22%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+L GP G+GK+ LA + ++ F+ S + + Sbjct: 188 VLLYGPPGTGKTLLARAVAGEAGVPFFALSGSSFVELFVGMGASRVRELFAQARKNAPCI 247 Query: 111 VLLEDIDLLDFN-------------DTQLFHIINSIHQYDSS---LLMTARTFPVSWGVC 154 V +++ID + + L ++ + + + ++M A P Sbjct: 248 VFIDEIDAVGRQRGSAAVVGGHDEREQTLNQLLTEMDGFGAYEGVIVMAATNRPDVLDKA 307 Query: 155 LPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211 L L+ + + PD E+++ +Q+ LAA + +R Sbjct: 308 L------LRPGRFDRQIPVGPPDAAGREEILRVHAKGKQLDPSLDLAA-VARRTP-GFTG 359 Query: 212 AEKLVDKMDNLALSRGMG----ITRSLAAEVLKET 242 A L + ++ A+ IT S E + Sbjct: 360 A-DLANLLNEAAILAVRRGRSHITMSEIDEAIDRV 393 >gi|71747532|ref|XP_822821.1| valosin-containing protein homolog [Trypanosoma brucei TREU927] gi|70832489|gb|EAN77993.1| valosin-containing protein homolog [Trypanosoma brucei] Length = 780 Score = 39.7 bits (92), Expect = 0.39, Method: Composition-based stats. Identities = 24/164 (14%), Positives = 61/164 (37%), Gaps = 33/164 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP GSGK+ +A ++++ + F N+ + + Sbjct: 226 PPRGILMYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESEGNLRNAFVESEKN 285 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + ++M A P + Sbjct: 286 APAIIFIDEIDSIAPKREKAQGEVEKRIVSQLLTLMDGLKGRSQVIVMAATNRPNAID-- 343 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PD+ +++ + ++ + + Sbjct: 344 -PALR-RFGRFDREIDIGVPDEIGRLEILRIHTKNMKLHPNVDV 385 >gi|325067914|ref|ZP_08126587.1| ATP-dependent metalloprotease FtsH [Actinomyces oris K20] Length = 358 Score = 39.7 bits (92), Expect = 0.39, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 25/60 (41%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G+GK+ LA + ++ FS A + + + + D N + Sbjct: 241 VLLYGPPGTGKTLLAKAVAGEAGVPFFSMAASEFVEMFVGVGASRVRDLFDQAKENAPAI 300 >gi|321264530|ref|XP_003196982.1| ATPase [Cryptococcus gattii WM276] gi|317463460|gb|ADV25195.1| ATPase, putative [Cryptococcus gattii WM276] Length = 1172 Score = 39.7 bits (92), Expect = 0.39, Method: Composition-based stats. Identities = 9/46 (19%), Positives = 23/46 (50%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 +L GP G+GK+ LA + +S + + ++ + + + ++ Sbjct: 748 ALLFGPPGTGKTLLARAVAAESGARMLAIQPSDVNDMYVGEGEKLV 793 >gi|281341969|gb|EFB17553.1| hypothetical protein PANDA_013561 [Ailuropoda melanoleuca] Length = 751 Score = 39.7 bits (92), Expect = 0.39, Method: Composition-based stats. Identities = 36/187 (19%), Positives = 68/187 (36%), Gaps = 39/187 (20%) Query: 50 EQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109 A + + P R ++L GP G+GK+ L + + +T F L + + + Sbjct: 501 SDAFSGLTASP----RSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWLGEAE 556 Query: 110 PVL----------------LEDIDLLDFNDTQLFH-IINSIH-------------QYDSS 139 ++ + DID+L + H +N + D Sbjct: 557 KIIHASFLVARCRQPSVIFVSDIDMLLSSQVSEEHSPVNRMRTEFLMQLDTVLTSAEDQI 616 Query: 140 LLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAA 199 +++ A + P L R + I LPD ++IV++ + ++ K A Sbjct: 617 VVICATSKPEEIDESL-----RRYFMKRLLIPLPDSTARHQIIVQLLSQHNYCLNDKEFA 671 Query: 200 YIVQRME 206 +VQR E Sbjct: 672 LLVQRTE 678 >gi|254584302|ref|XP_002497719.1| ZYRO0F11946p [Zygosaccharomyces rouxii] gi|238940612|emb|CAR28786.1| ZYRO0F11946p [Zygosaccharomyces rouxii] Length = 444 Score = 39.7 bits (92), Expect = 0.39, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 21/48 (43%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 V+L GP G+GK+ LA + + + A + I ++ E Sbjct: 225 VLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIRE 272 >gi|226509884|ref|NP_001150200.1| ATPase family AAA domain-containing protein 1 [Zea mays] gi|195637516|gb|ACG38226.1| ATPase family AAA domain-containing protein 1 [Zea mays] Length = 364 Score = 39.7 bits (92), Expect = 0.39, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 19/32 (59%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + V+L GP G+GK+ LA + +S + + Sbjct: 119 PQKGVLLYGPPGTGKTMLAKAIARESGAVFIN 150 >gi|194757108|ref|XP_001960807.1| GF11321 [Drosophila ananassae] gi|190622105|gb|EDV37629.1| GF11321 [Drosophila ananassae] Length = 740 Score = 39.7 bits (92), Expect = 0.39, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 22/43 (51%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109 V+LVGP G+GK+ LA + +++ F D +L+ Sbjct: 340 VLLVGPPGTGKTLLARAVAGEAKVPFFHAAGPEFDEVLVGQGA 382 >gi|167769902|ref|ZP_02441955.1| hypothetical protein ANACOL_01243 [Anaerotruncus colihominis DSM 17241] gi|167667893|gb|EDS12023.1| hypothetical protein ANACOL_01243 [Anaerotruncus colihominis DSM 17241] Length = 421 Score = 39.7 bits (92), Expect = 0.39, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 77/199 (38%), Gaps = 32/199 (16%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTR------------FSNIAKSLDSILIDTRKPVL 112 +I GPSG GK+ +A+I + ++ ++ ++I + Sbjct: 40 PNLIFYGPSGVGKTTVASIIAKRAGKKLCKLNGTTASTSDIRDVVGETNTIDGIGGVILY 99 Query: 113 LEDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171 L++I L+ L I + S L+ + T + V L SR +TV + Sbjct: 100 LDEIQYLNKKQQQTLLEFI----ENGSITLIASTTENPYFYVYNAVL-SR---STVFEFK 151 Query: 172 LPDDDFLEKVIVK------MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 +++ + + A R++ ++ + YI + A V+ + AL+ Sbjct: 152 PVQPQAVQRAVQRAFEAAGEAAGRRLEVEDGVYEYIASACGGDVRKAVNAVELL---ALA 208 Query: 226 RGMGITRSL--AAEVLKET 242 G T +L A +V +++ Sbjct: 209 AGANQTVTLEEARQVAQKS 227 >gi|270308855|ref|YP_003330913.1| recombination protein RecA [Dehalococcoides sp. VS] gi|270154747|gb|ACZ62585.1| recombination protein RecA [Dehalococcoides sp. VS] Length = 337 Score = 39.7 bits (92), Expect = 0.39, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 8/91 (8%) Query: 42 DLLVHSAIEQAVRL-IDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 + + S++ + L + P R+ + GP GSGK+ LA +++ + Sbjct: 38 EFIPTSSLALDIALGVGGIPR--GRIAEIFGPEGSGKTTLAQHIIAQAQKMGEKAAYIDV 95 Query: 101 DSILIDTRKPVLLEDIDLL-----DFNDTQL 126 + L ++D L D + L Sbjct: 96 EHALDPKYASTCGVNLDELLISQPDTGEEAL 126 >gi|154422500|ref|XP_001584262.1| ATPase, AAA family protein [Trichomonas vaginalis G3] gi|121918508|gb|EAY23276.1| ATPase, AAA family protein [Trichomonas vaginalis G3] Length = 446 Score = 39.7 bits (92), Expect = 0.39, Method: Composition-based stats. Identities = 14/37 (37%), Positives = 24/37 (64%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS 99 P R ++L GP G+GKS LA + ++ ++ F +I+ S Sbjct: 175 PWRGILLYGPPGTGKSYLAKATASEANNSTFISISTS 211 >gi|104781339|ref|YP_607837.1| recombination factor protein RarA [Pseudomonas entomophila L48] gi|95110326|emb|CAK15033.1| DNA-dependant ATPase [Pseudomonas entomophila L48] Length = 441 Score = 39.7 bits (92), Expect = 0.39, Method: Composition-based stats. Identities = 34/210 (16%), Positives = 75/210 (35%), Gaps = 32/210 (15%) Query: 57 DSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 ++ +I GP G GK+ LA + + + F ++ L + + + + Sbjct: 40 EALEQGALHSMIFWGPPGVGKTTLARLLAQFCDAH-FETVSAVLAGVKEIRQAVEVAKQQ 98 Query: 117 DLLDFNDTQLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRL 162 T LF H N Q D +L+ T L SR Sbjct: 99 AGQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNNA---LLSR- 154 Query: 163 KAATVVKISLPDDDFLEKVIVKMFAD------RQIFIDKKLAAYIVQRMERSLVFAEKLV 216 A V + D+ L K++ + ++ R + + + ++ + +++ Sbjct: 155 --ARVYVLKSLDEAALRKLVDRALSEERGLGKRNLRVGDEAFKMLMAAAD---GDGRRML 209 Query: 217 DKMDNLA-LSR-GMGITRSLAAEVLKETQQ 244 + ++N + L+ G I L +L ++++ Sbjct: 210 NFLENASDLAEDGGEIGVELLQSLLGDSRR 239 >gi|94971585|ref|YP_593633.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Candidatus Koribacter versatilis Ellin345] gi|226704714|sp|Q1IHU1|MIAA_ACIBL RecName: Full=tRNA dimethylallyltransferase; AltName: Full=Dimethylallyl diphosphate:tRNA dimethylallyltransferase; Short=DMAPP:tRNA dimethylallyltransferase; Short=DMATase; AltName: Full=Isopentenyl-diphosphate:tRNA isopentenyltransferase; Short=IPP transferase; Short=IPPT; Short=IPTase gi|94553635|gb|ABF43559.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Candidatus Koribacter versatilis Ellin345] Length = 307 Score = 39.7 bits (92), Expect = 0.39, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 71/162 (43%), Gaps = 15/162 (9%) Query: 66 VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125 + +L+GP+GSGK+ L+ +++ + + ++ L E+ + + Sbjct: 6 LFVLLGPTGSGKTSLSIALAERFGGEIVNCDSVAVYRELDIGTAKPTHEERESVPH---- 61 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKM 185 H+ + + + MTA + L D+ SR K VV + +L ++ + Sbjct: 62 --HLFDVLPPTEP---MTAGEYARRAREVLKDIASRGKLPIVVGGTGL---YLRALLDGL 113 Query: 186 FADRQIFIDKKLAAYIVQRM-ERSLVFAEKLVDKMDNLALSR 226 FA ++L ++ +R ER + +++ +MD +A ++ Sbjct: 114 FA--GPERSEELREHLRRREQERGPTYLHRILSRMDRVAAAK 153 >gi|8439575|gb|AAF74998.1| cdc48-like protein [Entamoeba histolytica] Length = 772 Score = 39.7 bits (92), Expect = 0.39, Method: Composition-based stats. Identities = 31/190 (16%), Positives = 59/190 (31%), Gaps = 40/190 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106 PS+ V+ GP G GK+ LA + + ++ S N+ D Sbjct: 509 PSKGVLFFGPPGCGKTLLAKAVASQCKANFISIKGPELLTMWYGESEANVRDVFDKARQA 568 Query: 107 TRKPVLLEDIDLLDFND---------------TQLFHIINSIHQYDSSLLMTARTFPVSW 151 + +++D + QL ++ + + ++ A P Sbjct: 569 APCVLFFDELDSIGRARGGGAGDAGGSADRILNQLLTEMDGVGKKKQVFIIGATNRPDIL 628 Query: 152 GVCLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMER-S 208 L L RL I LPD ++ R + + +I + E S Sbjct: 629 DPAL--LRPGRLDQLLF--IPLPDKASRISILQ--AKLRNSPVAPDVDLDWIAEHTENFS 682 Query: 209 LVFAEKLVDK 218 ++V + Sbjct: 683 GADLAEIVQR 692 Score = 39.0 bits (90), Expect = 0.62, Method: Composition-based stats. Identities = 23/164 (14%), Positives = 59/164 (35%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + V+L GP G GK+ +A ++++ N+ ++ + Sbjct: 236 PPKGVLLYGPPGCGKTMIARAVANETGVFLILINGPEIMSKMAGESEGNLREAFAEAEKN 295 Query: 107 TRKPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + + ++M A P + Sbjct: 296 APALIFIDEIDSIAPKRDKAQGEVERRVVAQLLTLMDGMKSRSNVIVMAATNRPNAIDSA 355 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L R + + I +PD+ +++ +++ I + Sbjct: 356 LR----RFGRFDREIDIGVPDETGRLEIL--NIHTKKMKIADDV 393 >gi|68470308|ref|XP_720658.1| hypothetical protein CaO19.11695 [Candida albicans SC5314] gi|68470569|ref|XP_720530.1| hypothetical protein CaO19.4219 [Candida albicans SC5314] gi|40362746|gb|AAR84642.1| AAA ATPase [Candida albicans] gi|46442402|gb|EAL01691.1| hypothetical protein CaO19.4219 [Candida albicans SC5314] gi|46442537|gb|EAL01825.1| hypothetical protein CaO19.11695 [Candida albicans SC5314] Length = 827 Score = 39.7 bits (92), Expect = 0.39, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P+ V++ GP G GK+ LA +++SR+ S Sbjct: 556 PAGVLM-WGPPGCGKTLLAKAVANESRANFIS 586 >gi|328767174|gb|EGF77225.1| hypothetical protein BATDEDRAFT_37479 [Batrachochytrium dendrobatidis JAM81] Length = 828 Score = 39.7 bits (92), Expect = 0.40, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 49/121 (40%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 250 PPRGILMFGPPGTGKTLVARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 309 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + + ++M A P S Sbjct: 310 SPAIIFIDEIDAIAPKREKTNGEVERRVVSQLLTLMDGLKARSNVVVMAATNRPNSIDPA 369 Query: 155 L 155 L Sbjct: 370 L 370 Score = 39.0 bits (90), Expect = 0.59, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 523 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKA 579 >gi|327438072|dbj|BAK14437.1| ATP-dependent Zn protease [Solibacillus silvestris StLB046] Length = 679 Score = 39.7 bits (92), Expect = 0.40, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 70/205 (34%), Gaps = 45/205 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 ++LVGP G+GK+ LA + ++ FS + + Sbjct: 205 ILLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCI 264 Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + + L + ++ + +++ A P L Sbjct: 265 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGANEGIIIIAATNRPDILDKAL 324 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 L+ + + PD E ++ ++ + LAA + QR A Sbjct: 325 ------LRPGRFDRQITVGHPDVKGREAILKVHARNKPLSDTVDLAA-VAQRTP-GFSGA 376 Query: 213 EKLVDKMDNLAL--SRGMGITRSLA 235 L + ++ AL +R + ++A Sbjct: 377 -DLENLLNEAALVAARKNKKSINMA 400 >gi|297848504|ref|XP_002892133.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata] gi|297337975|gb|EFH68392.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata] Length = 1238 Score = 39.7 bits (92), Expect = 0.40, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 58/165 (35%), Gaps = 47/165 (28%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS----------------ILID 106 P++ ++L GP G+GK+ LA + ++ + + S+ S Sbjct: 970 PTKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKI 1029 Query: 107 TRKPVLLEDIDLL------DFNDTQL------FHIIN----SIHQYDSSLLMTA------ 144 + ++++D + + F +IN + L++ A Sbjct: 1030 APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEF-MINWDGLRTKDKERVLVLAATNRPFD 1088 Query: 145 ------RTFPVSWGVCLPDL--CSRLKAATVVKISLPDDDFLEKV 181 R P V LPD S++ + + K + +D LE + Sbjct: 1089 LDEAVIRRLPRRLMVNLPDSANRSKILSVILAKEEMAEDVDLEAI 1133 >gi|317131450|ref|YP_004090764.1| AAA ATPase central domain protein [Ethanoligenens harbinense YUAN-3] gi|315469429|gb|ADU26033.1| AAA ATPase central domain protein [Ethanoligenens harbinense YUAN-3] Length = 423 Score = 39.7 bits (92), Expect = 0.40, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 63/187 (33%), Gaps = 27/187 (14%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTR------------FSNIAKSLDSILIDTRKPVL 112 +I GPSG GK+ +A+I + ++ T I LD+ + Sbjct: 39 PNLIFYGPSGVGKTTVASILAKQAGKTLHRLNGTNMSTADIKAIVGELDTFAGMGGVLLY 98 Query: 113 LEDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR-----LKAAT 166 L++I L+ L I + L+ + T + + L SR K+ Sbjct: 99 LDEIQYLNKKQQQSLLEFI----EDGRITLIASTTENPYFYIYNAIL-SRCTVFEFKSVP 153 Query: 167 VVKISLPDDDFLEK-VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 +I+ +++ R I + ++ A I + A V+ + A Sbjct: 154 SAEIAK---AVRRAFAVMEQDKGRTIRVPDEVVAQISTGCGGDVRKAINAVELLALAARE 210 Query: 226 RGMGITR 232 +T Sbjct: 211 ADGELTV 217 >gi|239608100|gb|EEQ85087.1| vacuolar sorting protein 4b [Ajellomyces dermatitidis ER-3] Length = 831 Score = 39.7 bits (92), Expect = 0.40, Method: Composition-based stats. Identities = 19/40 (47%), Positives = 26/40 (65%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P+R ++L GP G+GK+ LA + +S ST FS A SL S Sbjct: 575 PARGMLLFGPPGTGKTMLARAVATESHSTFFSVSASSLTS 614 >gi|238882613|gb|EEQ46251.1| ribosome biogenesis ATPase RIX7 [Candida albicans WO-1] Length = 827 Score = 39.7 bits (92), Expect = 0.40, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P+ V++ GP G GK+ LA +++SR+ S Sbjct: 556 PAGVLM-WGPPGCGKTLLAKAVANESRANFIS 586 >gi|260943676|ref|XP_002616136.1| hypothetical protein CLUG_03377 [Clavispora lusitaniae ATCC 42720] gi|238849785|gb|EEQ39249.1| hypothetical protein CLUG_03377 [Clavispora lusitaniae ATCC 42720] Length = 440 Score = 39.7 bits (92), Expect = 0.40, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + ++L GP G+GK+ A ++++ +T I L + ++ E Sbjct: 215 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 266 >gi|226330732|ref|ZP_03806250.1| hypothetical protein PROPEN_04652 [Proteus penneri ATCC 35198] gi|225201527|gb|EEG83881.1| hypothetical protein PROPEN_04652 [Proteus penneri ATCC 35198] Length = 354 Score = 39.7 bits (92), Expect = 0.40, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 67/198 (33%), Gaps = 36/198 (18%) Query: 67 VILVGPSGSGKSCLANIWS--DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G+GK+ LA I ++ R S + + I R+ + + + T Sbjct: 61 MILWGPPGTGKTTLAEIIGRYAQADIERLSAVTSGIKEI----RESIEIARQNRNAGRRT 116 Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N Q D ++ T L SR A V + Sbjct: 117 ILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSA---LLSR---ARVYLL 170 Query: 171 SLPDDDFLEKVIVKMFAD-------RQIFIDKKL---AAYIVQRMERSLVFAEKLVDKMD 220 + +E V+ + D R I + A +V R + +++ + Sbjct: 171 RSLTEADIELVLQQALDDTERGLGGRNIILPNDTRKMIAQLVNGDARRSLNLLEMMADIA 230 Query: 221 NLALSRGMGITRSLAAEV 238 + +T +L E+ Sbjct: 231 EVDNQGKRVLTPALLTEI 248 >gi|224824471|ref|ZP_03697578.1| IstB domain protein ATP-binding protein [Lutiella nitroferrum 2002] gi|224602964|gb|EEG09140.1| IstB domain protein ATP-binding protein [Lutiella nitroferrum 2002] Length = 245 Score = 39.7 bits (92), Expect = 0.40, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 22/106 (20%) Query: 67 VILVGPSGSGKSCLANIW--SDKSRSTRF----------------SNIAKSLDSILIDTR 108 +ILVG +G+GK+ LA + R R L + + Sbjct: 101 LILVGGTGTGKTHLATALGVAAIHRGKRVRFYNAVDLVNLLEREKQQGKAGLLARQLVQM 160 Query: 109 KPVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSW 151 V+L+++ L F + LFH+I+ +++ +SL++T W Sbjct: 161 DAVILDELGYLPFPESGGALLFHLISQLYE-KTSLIITTNLSFGEW 205 >gi|196233359|ref|ZP_03132203.1| Holliday junction DNA helicase RuvB [Chthoniobacter flavus Ellin428] gi|196222499|gb|EDY17025.1| Holliday junction DNA helicase RuvB [Chthoniobacter flavus Ellin428] Length = 339 Score = 39.7 bits (92), Expect = 0.40, Method: Composition-based stats. Identities = 37/202 (18%), Positives = 68/202 (33%), Gaps = 35/202 (17%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G GK+ LA I + + +++ LE D+L ++ Sbjct: 56 ILLSGPPGLGKTTLAYILAHAMGVNIKNTSGPTIEKAGDLAGLLTTLERGDVLFIDEI-- 113 Query: 127 FHIINSIHQ-------YDSSLLMTARTFP--VSWGVCLPD----------------LCSR 161 H + + D L + P S + LP L +R Sbjct: 114 -HRLQPAIEEYLYPAMEDYKLDIIIDQGPNARSIPLNLPRFTLIGATTRAGMLSAPLRTR 172 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQR---MERSLVFAEKLVDK 218 ++ + L+K++++ + ID A I R R + V Sbjct: 173 F--GMTCRLDYYTAEELQKIVLRSAGLIGLDIDDPGALEIAARSRGTPRIANNLLRWVR- 229 Query: 219 MDNLALSRGMGITRSLAAEVLK 240 D + G +TR +A + L+ Sbjct: 230 -DFAQVRAGNRVTRDVADKALE 250 >gi|195504964|ref|XP_002099305.1| GE23439 [Drosophila yakuba] gi|229559933|sp|B4PL32|SPAST_DROYA RecName: Full=Spastin gi|194185406|gb|EDW99017.1| GE23439 [Drosophila yakuba] Length = 758 Score = 39.7 bits (92), Expect = 0.40, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 72/186 (38%), Gaps = 34/186 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P++ ++L GP G+GK+ LA + + +T + A SL S + + ++ Sbjct: 515 PAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHM 574 Query: 113 ------LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL-KAA 165 ++++D L + H + + + L+ P + PD R+ A Sbjct: 575 QPSIIFIDEVDSLLSERSSSEH--EASRRLKTEFLVEFDGLPGN-----PD-GDRIVVLA 626 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 + D+ L + +++ D++ ++ R+ +K +D AL Sbjct: 627 ATNRPQELDEAALRRFTKRVYVS---LPDEQTRELLLNRL------LQKQGSPLDTEALR 677 Query: 226 RGMGIT 231 R IT Sbjct: 678 RLAKIT 683 >gi|194910014|ref|XP_001982057.1| GG11247 [Drosophila erecta] gi|229559925|sp|B3P8A3|SPAST_DROER RecName: Full=Spastin gi|190656695|gb|EDV53927.1| GG11247 [Drosophila erecta] Length = 758 Score = 39.7 bits (92), Expect = 0.40, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 72/186 (38%), Gaps = 34/186 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P++ ++L GP G+GK+ LA + + +T + A SL S + + ++ Sbjct: 515 PAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHM 574 Query: 113 ------LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL-KAA 165 ++++D L + H + + + L+ P + PD R+ A Sbjct: 575 QPSIIFIDEVDSLLSERSSSEH--EASRRLKTEFLVEFDGLPGN-----PD-GDRIVVLA 626 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 + D+ L + +++ D++ ++ R+ +K +D AL Sbjct: 627 ATNRPQELDEAALRRFTKRVYVS---LPDEQTRELLLNRL------LQKQGSPLDTEALR 677 Query: 226 RGMGIT 231 R IT Sbjct: 678 RLAKIT 683 >gi|108801733|ref|YP_641930.1| Mername-AA223 peptidase [Mycobacterium sp. MCS] gi|119870884|ref|YP_940836.1| Mername-AA223 peptidase [Mycobacterium sp. KMS] gi|108772152|gb|ABG10874.1| membrane protease FtsH catalytic subunit [Mycobacterium sp. MCS] gi|119696973|gb|ABL94046.1| membrane protease FtsH catalytic subunit [Mycobacterium sp. KMS] Length = 783 Score = 39.7 bits (92), Expect = 0.40, Method: Composition-based stats. Identities = 33/206 (16%), Positives = 62/206 (30%), Gaps = 65/206 (31%) Query: 22 KNKEEQLFFSFPRCL---GISRD----------DLLVHSAIEQAVRLIDSWPSWPSRVVI 68 K++ +QL P+ D D L + + QA+ R V+ Sbjct: 147 KSRAKQLTKDMPKTTFADVAGADEAVEELYEIKDFLQNPSRYQALGAK------IPRGVL 200 Query: 69 LVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKPVL 112 L GP G+GK+ LA + ++ S + + ++ + Sbjct: 201 LYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFEQAKQNSPSIIF 260 Query: 113 LEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSW------ 151 +++ID + + L + ++ +L+ A P Sbjct: 261 VDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGDRQGVILIAATNRPDILDPALLR 320 Query: 152 --------GVCLPDLCSRLKAATVVK 169 V PDL R +A V Sbjct: 321 PGRFDRQIPVTSPDLAGR-RAVLKVH 345 >gi|116629362|ref|YP_814534.1| ABC-type proline/glycine betaine transport system, ATPase component [Lactobacillus gasseri ATCC 33323] gi|311110983|ref|ZP_07712380.1| glycine betaine/carnitine/choline ABC transporter, ATP-binding protein [Lactobacillus gasseri MV-22] gi|116094944|gb|ABJ60096.1| ABC-type proline/glycine betaine transport system, ATPase component [Lactobacillus gasseri ATCC 33323] gi|311066137|gb|EFQ46477.1| glycine betaine/carnitine/choline ABC transporter, ATP-binding protein [Lactobacillus gasseri MV-22] Length = 320 Score = 39.7 bits (92), Expect = 0.40, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 23/84 (27%) Query: 66 VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125 + +LVGPSGSGK+ L ++ + ++ T+ +LL+D + +++ + Sbjct: 30 IFVLVGPSGSGKTTLLKMF----------------NRLIEPTKGEILLDDKSIKEYDLRK 73 Query: 126 LFHIINSIHQYDSSLLMTARTFPV 149 L + +L TA FP Sbjct: 74 L-------REKTGYVLQTASLFPN 90 >gi|324522117|gb|ADY47996.1| Transitional endoplasmic reticulum ATPase 1 [Ascaris suum] Length = 319 Score = 39.7 bits (92), Expect = 0.40, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 20/31 (64%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF 93 P R ++L GP G+GK+ +A ++++ + F Sbjct: 243 PPRGILLYGPPGTGKTLIARAVANETGAFFF 273 >gi|324501967|gb|ADY40871.1| ATP-dependent zinc metalloprotease YME1 [Ascaris suum] Length = 729 Score = 39.7 bits (92), Expect = 0.40, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 22/43 (51%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109 V+LVGP G+GK+ LA + +++ F D +L+ Sbjct: 285 VLLVGPPGTGKTLLARAIAGEAQVPFFHTSGSEFDEVLVGQGA 327 >gi|262165385|ref|ZP_06033122.1| ATPase AAA family [Vibrio mimicus VM223] gi|262025101|gb|EEY43769.1| ATPase AAA family [Vibrio mimicus VM223] Length = 449 Score = 39.7 bits (92), Expect = 0.40, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 6/74 (8%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G+GK+ LA + ++ + + A + I E+ L T L Sbjct: 54 MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAREN--KLSGRRTIL 111 Query: 127 F----HIINSIHQY 136 F H N Q Sbjct: 112 FVDEVHRFNKSQQD 125 >gi|227502057|ref|ZP_03932106.1| cell division protein FtsH [Corynebacterium accolens ATCC 49725] gi|227077212|gb|EEI15175.1| cell division protein FtsH [Corynebacterium accolens ATCC 49725] Length = 808 Score = 39.7 bits (92), Expect = 0.40, Method: Composition-based stats. Identities = 29/198 (14%), Positives = 67/198 (33%), Gaps = 43/198 (21%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110 R V+L GP G+GK+ LA + ++ +S + + Sbjct: 201 RGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFKQAKEHSP 260 Query: 111 --VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGV 153 + +++ID + + L + ++ + +L+ A P Sbjct: 261 CIIFVDEIDAVGRQRGSGTGGGHDEREQTLNQLLVEMDGFGDREGVILIAATNRPDILDP 320 Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L+ + ++ PD E+++ D+ + + +A + +R + Sbjct: 321 AL------LRPGRFDRQIPVTNPDLAGREQILRVHAKDKPLAEEVDVAQ-LAKRTA-GMS 372 Query: 211 FAEKLVDKMDNLALSRGM 228 A L + ++ AL Sbjct: 373 GA-DLANVLNEAALLTAR 389 >gi|225464692|ref|XP_002277515.1| PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] Length = 835 Score = 39.7 bits (92), Expect = 0.40, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 21/32 (65%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P R ++L GP G+GK+ LA ++++ ++ + Sbjct: 555 PCRGILLFGPPGTGKTMLAKAIANEAGASFIN 586 >gi|254384448|ref|ZP_04999789.1| ATPase associated with various cellular activities [Streptomyces sp. Mg1] gi|194343334|gb|EDX24300.1| ATPase associated with various cellular activities [Streptomyces sp. Mg1] Length = 617 Score = 39.7 bits (92), Expect = 0.40, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 7/54 (12%) Query: 30 FSFPRCLGISRDDLLV--HSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 P +LLV + + L+ W R ++L GP G+GK+ LA Sbjct: 318 LELPEPTDELAAELLVHKTDWLREVRDLL-----WDDRQLVLYGPPGTGKTYLA 366 >gi|209548968|ref|YP_002280885.1| recombination factor protein RarA [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534724|gb|ACI54659.1| AAA ATPase central domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 438 Score = 39.7 bits (92), Expect = 0.40, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 57/157 (36%), Gaps = 29/157 (18%) Query: 54 RLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPV 111 R+I+S +I GP G+GK+ +A + S ++ + S I + + Sbjct: 47 RMIESD---SLGSMIFWGPPGTGKTTVARLLSGEAGLAFEQISAIFSGVADLKKMFETA- 102 Query: 112 LLEDIDLLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPD 157 + +D T LF H N + + +L+ T Sbjct: 103 ---RLRRMDGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVILVGATTENPSFELNAA--- 156 Query: 158 LCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID 194 L SR A V+ D++ LE+++ + A Q + Sbjct: 157 LLSR---ARVLTFKSHDEESLEELLKRAEAIEQKPLP 190 >gi|160331725|ref|XP_001712569.1| prsS8 [Hemiselmis andersenii] gi|159766018|gb|ABW98244.1| prsS8 [Hemiselmis andersenii] Length = 407 Score = 39.7 bits (92), Expect = 0.40, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 20/48 (41%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 V+L GP G+GK+ LA + S T L I ++ E Sbjct: 185 VLLYGPPGTGKTLLARAVAHHSGCTFIRMSGSELVQKYIGEGSRMVRE 232 >gi|156843387|ref|XP_001644761.1| hypothetical protein Kpol_1020p9 [Vanderwaltozyma polyspora DSM 70294] gi|156115411|gb|EDO16903.1| hypothetical protein Kpol_1020p9 [Vanderwaltozyma polyspora DSM 70294] Length = 812 Score = 39.7 bits (92), Expect = 0.40, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 48/121 (39%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R V++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 239 PPRGVLMYGPPGTGKTLMARAVANETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEKN 298 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + + +++ A P S Sbjct: 299 APAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNVVVIAATNRPNSIDPA 358 Query: 155 L 155 L Sbjct: 359 L 359 Score = 37.1 bits (85), Expect = 2.4, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 16/74 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 PS+ V+ GP G+GK+ LA + + + SNI D Sbjct: 512 PSKGVLFYGPPGTGKTLLAKAVATEVSANFISVKGPELLSMWYGESESNIRDIFDKARAA 571 Query: 107 TRKPVLLEDIDLLD 120 V L+++D + Sbjct: 572 APTVVFLDELDSIA 585 >gi|114653053|ref|XP_001159421.1| PREDICTED: similar to Psmc6 protein isoform 1 [Pan troglodytes] Length = 370 Score = 39.7 bits (92), Expect = 0.40, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + ++ S+ I ++ E Sbjct: 180 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 231 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 232 ------MFNYARDHQ 240 >gi|45185737|ref|NP_983453.1| ACR050Cp [Ashbya gossypii ATCC 10895] gi|44981492|gb|AAS51277.1| ACR050Cp [Ashbya gossypii ATCC 10895] Length = 475 Score = 39.7 bits (92), Expect = 0.40, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + ++L GP G+GK+ A ++++ +T I L + ++ E Sbjct: 250 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 301 >gi|85707807|ref|ZP_01038873.1| ATPase [Erythrobacter sp. NAP1] gi|85689341|gb|EAQ29344.1| ATPase [Erythrobacter sp. NAP1] Length = 439 Score = 39.7 bits (92), Expect = 0.40, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 6/75 (8%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G+GK+ +A + +D S A S + D +K D T L Sbjct: 61 MVLWGPPGTGKTSIARLLADAVGMRFVSISAVF--SGVADLKKAFAEADKMADAGKTTLL 118 Query: 127 F----HIINSIHQYD 137 F H N Q Sbjct: 119 FVDEIHRFNRAQQDG 133 >gi|25012002|ref|NP_736397.1| recombination factor protein RarA [Streptococcus agalactiae NEM316] gi|77412913|ref|ZP_00789117.1| ATPase, AAA family [Streptococcus agalactiae 515] gi|24413545|emb|CAD47623.1| Unknown [Streptococcus agalactiae NEM316] gi|77161053|gb|EAO72160.1| ATPase, AAA family [Streptococcus agalactiae 515] Length = 422 Score = 39.7 bits (92), Expect = 0.40, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 64/166 (38%), Gaps = 22/166 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKS-------RSTR--FSNIAKSLDSILIDTRKPVLLEDID 117 +IL GP G GK+ +A+ + + +T + + + +LL++I Sbjct: 42 MILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIH 101 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 LD + + + +++ A T + V P + SR + ++ ++ Sbjct: 102 RLDKTKQDFLLP---LLENGNIIMIGATTENPFFSVT-PAIRSR---VQIFELEPLSNED 154 Query: 178 LEKVIVKMFAD--RQ----IFIDKKLAAYIVQRMERSLVFAEKLVD 217 ++K I +D R + ID + +IV L A +D Sbjct: 155 IKKAIQLAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLD 200 >gi|329765429|ref|ZP_08257008.1| ATPase central domain-containing protein [Candidatus Nitrosoarchaeum limnia SFB1] gi|329138070|gb|EGG42327.1| ATPase central domain-containing protein [Candidatus Nitrosoarchaeum limnia SFB1] Length = 397 Score = 39.7 bits (92), Expect = 0.40, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%) Query: 61 SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 WP ++L GP G+GK+ LA +++ + A S+ Sbjct: 147 GWPKG-MLLYGPPGTGKTMLAAATANEMDGYFINVDASSM 185 >gi|322710616|gb|EFZ02190.1| intermembrane space AAA protease IAP-1 [Metarhizium anisopliae ARSEF 23] Length = 688 Score = 39.7 bits (92), Expect = 0.40, Method: Composition-based stats. Identities = 32/195 (16%), Positives = 60/195 (30%), Gaps = 63/195 (32%) Query: 67 VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110 V+LVGP G+GK+ LA + ++ + + + + Sbjct: 241 VLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEIFVGVGAKRVRELFAAAKAKSPAI 300 Query: 111 VLLEDIDLLDF-----NDT-------QLFHIINSIHQYDSSLLMTARTFPVSW------- 151 + ++++D + + QL ++ Q ++M A P Sbjct: 301 IFIDELDAIGGKRNPRDQAHAKQTLNQLLTELDGFDQDTKIIIMGATNLPNLLDKALTRP 360 Query: 152 -------GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQ 203 V LPD+ RL I+K A + I + I Sbjct: 361 GRFDRHINVDLPDVRGRL------------------AILKHHAKK-IKAAPDVDLDAIAA 401 Query: 204 RME-RSLVFAEKLVD 217 R RS E +++ Sbjct: 402 RSPGRSGAELENMLN 416 >gi|319944196|ref|ZP_08018472.1| cell division protein FtsH [Lautropia mirabilis ATCC 51599] gi|319742491|gb|EFV94902.1| cell division protein FtsH [Lautropia mirabilis ATCC 51599] Length = 641 Score = 39.7 bits (92), Expect = 0.40, Method: Composition-based stats. Identities = 33/197 (16%), Positives = 68/197 (34%), Gaps = 39/197 (19%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110 R V++VGP G+GK+ LA + +++ FS + + Sbjct: 197 RGVLMVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEMFVGVGAARVRDMFENAKKHAP 256 Query: 111 --VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGV 153 + +++ID + + L + ++ +L+ A P Sbjct: 257 CIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFETGQGIILIAATNRPDVLDP 316 Query: 154 CLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 L L R VV + PD E+++ R++ + + A ++ R + A Sbjct: 317 AL--LRPGRFDRQVVVSL--PDIRGREQILNVHM--RKVPVGPDVQADVLARGTPGMSGA 370 Query: 213 EKLVDKMDNLALSRGMG 229 L + ++ AL Sbjct: 371 -DLANLVNEAALFAARR 386 >gi|296448894|ref|ZP_06890716.1| ATP-dependent metalloprotease FtsH [Methylosinus trichosporium OB3b] gi|296253598|gb|EFH00803.1| ATP-dependent metalloprotease FtsH [Methylosinus trichosporium OB3b] Length = 478 Score = 39.7 bits (92), Expect = 0.40, Method: Composition-based stats. Identities = 32/213 (15%), Positives = 73/213 (34%), Gaps = 43/213 (20%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110 R V+LVGP G+GK+ LA + ++ F+ + + Sbjct: 27 RGVLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAP 86 Query: 111 --VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGV 153 + +++ID + D + L + ++ + +L+ A P Sbjct: 87 CIIFVDEIDAVGRHRGAGLGGGNDEREQTLNQLLVEMDGFEANEGIILIAATNRPDVLDP 146 Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L ++ + + PD EK++ R++ + + +V R Sbjct: 147 AL------MRPGRFDRQINVPNPDFIGREKILKVHA--RKVPLAPDVDLKVVARGTPGFS 198 Query: 211 FAEKLVDKMDNLALSRGMGITRSLAAEVLKETQ 243 A L++ ++ AL R + + ++ + Sbjct: 199 GA-DLMNLVNEAALLAARRSKRIVTRQEFEDAR 230 >gi|296422801|ref|XP_002840947.1| hypothetical protein [Tuber melanosporum Mel28] gi|295637174|emb|CAZ85138.1| unnamed protein product [Tuber melanosporum] Length = 270 Score = 39.7 bits (92), Expect = 0.40, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + ++L GP G+GK+ A ++++ +T I L + ++ E Sbjct: 45 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 96 >gi|312195527|ref|YP_004015588.1| AAA ATPase [Frankia sp. EuI1c] gi|311226863|gb|ADP79718.1| AAA ATPase central domain protein [Frankia sp. EuI1c] Length = 622 Score = 39.7 bits (92), Expect = 0.40, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 62/181 (34%), Gaps = 48/181 (26%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPV---------- 111 V+L GP G+GK+ LA+I S + + K + +++ + R + Sbjct: 97 VVLWGPPGTGKTTLAHIVSRATGRRFRELSAVTAGVKDVRAVIDEARDALSSSRSNQSRR 156 Query: 112 ------LLEDIDLLDFND------TQLF----HIINSIH--------QYDSSLLMTARTF 147 L D + T LF H + L+ A T Sbjct: 157 MVREPGLFSDAAQAPGGEVPVDLRTVLFIDEVHRFTRTQQDALLPAVERGWITLVAATTE 216 Query: 148 PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFAD-RQ----IFIDKKLAAYIV 202 S+ V P L SR + + ++ DD + ++ + D R + I ++V Sbjct: 217 NPSFSVVAP-LLSR---SLLFTLTPLTDDDIRALVRRALVDPRGYGGRVRIADDALEHLV 272 Query: 203 Q 203 + Sbjct: 273 R 273 >gi|227328850|ref|ZP_03832874.1| ATP-dependent protease ATP-binding subunit ClpX [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 424 Score = 39.7 bits (92), Expect = 0.40, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 48/132 (36%), Gaps = 30/132 (22%) Query: 2 NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55 ++++E+ P ++++ P P + DD ++ Sbjct: 46 DIIREEIKEVAPHRERSALPT----------PHEIRRHLDDYVIGQEQAKKVLAVAVYNH 95 Query: 56 IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107 + S ++L+GP+GSGK+ LA + RF ++ ++ T Sbjct: 96 YKRLRNGDSSNGIELGKSNILLIGPTGSGKTLLAETLA------RFLDVPFTMADATTLT 149 Query: 108 RKPVLLEDIDLL 119 + ED++ + Sbjct: 150 EAGYVGEDVENI 161 >gi|224093035|ref|XP_002188362.1| PREDICTED: putative 26S protease regulatory subunit 7 [Taeniopygia guttata] Length = 569 Score = 39.7 bits (92), Expect = 0.40, Method: Composition-based stats. Identities = 30/215 (13%), Positives = 61/215 (28%), Gaps = 66/215 (30%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109 P + V+L GP G+GK+ A ++++ + I L + Sbjct: 344 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 403 Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147 + ++ID + + +IN + + + +LM Sbjct: 404 KACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 463 Query: 148 ------PVSW----GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P LPDL R + KI R + +++ + Sbjct: 464 DPALMRPGRLDRKIEFSLPDLEGR---THIFKIHA----------------RSMSVERDI 504 Query: 198 AAYIVQR-MERSLVF-AEKLVDKMDNLALSRGMGI 230 ++ R S + + A+ I Sbjct: 505 RFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKI 539 >gi|261417562|ref|YP_003251244.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. Y412MC61] gi|297528437|ref|YP_003669712.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. C56-T3] gi|319765219|ref|YP_004130720.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. Y412MC52] gi|261374019|gb|ACX76762.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. Y412MC61] gi|297251689|gb|ADI25135.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. C56-T3] gi|317110085|gb|ADU92577.1| ATP-dependent metalloprotease FtsH [Geobacillus sp. Y412MC52] Length = 632 Score = 39.7 bits (92), Expect = 0.40, Method: Composition-based stats. Identities = 30/197 (15%), Positives = 62/197 (31%), Gaps = 43/197 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ FS + + Sbjct: 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFETAKKNAPCI 257 Query: 111 VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + + L + ++ + + +++ A P L Sbjct: 258 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFNGNEGIIIIAATNRPDILDPAL 317 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 L+ + + PD E V+ ++ + L I R A Sbjct: 318 ------LRPGRFDRQITVDRPDVKGREAVLRVHARNKPLDESVDLKT-IAMRTP-GFSGA 369 Query: 213 EKLVDKMDNLALSRGMG 229 L + ++ AL Sbjct: 370 -DLENLLNEAALVAARR 385 >gi|254388632|ref|ZP_05003865.1| cell division protein FtsH [Streptomyces clavuligerus ATCC 27064] gi|326441646|ref|ZP_08216380.1| cell division protein FtsH [Streptomyces clavuligerus ATCC 27064] gi|197702352|gb|EDY48164.1| cell division protein FtsH [Streptomyces clavuligerus ATCC 27064] Length = 661 Score = 39.7 bits (92), Expect = 0.40, Method: Composition-based stats. Identities = 35/204 (17%), Positives = 66/204 (32%), Gaps = 49/204 (24%) Query: 67 VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110 V+L GP G+GK+ LA + ++ S + + + Sbjct: 196 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKANAPAI 255 Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 V +++ID + D + L + ++ +L+ A P L Sbjct: 256 VFVDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDVKGGVILIAATNRPDILDPAL 315 Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVKMFADRQIFIDKKL-- 197 PD+ RL+ V + P D L V + + L Sbjct: 316 LRPGRFDRQIAVDRPDMQGRLEILKVHQKGKPVAPDVDLGAVARRTPGFTGADLSNVLNE 375 Query: 198 AAYIVQRMERSLVFAEKLVDKMDN 221 AA + R ++ L+ + L + +D Sbjct: 376 AALLTARSDKKLIDNQALDEAIDR 399 >gi|315230714|ref|YP_004071150.1| proteasome-activating AAA-ATPase [Thermococcus barophilus MP] gi|315183742|gb|ADT83927.1| proteasome-activating AAA-ATPase [Thermococcus barophilus MP] Length = 398 Score = 39.7 bits (92), Expect = 0.40, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 23/52 (44%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G GK+ +A + + +T + L I ++ E Sbjct: 172 PPKGVLLYGPPGCGKTLMAKALAREVNATFIRVVGSELVRKYIGEGARLVHE 223 >gi|195331488|ref|XP_002032433.1| GM26551 [Drosophila sechellia] gi|229559929|sp|B4HGG6|SPAST_DROSE RecName: Full=Spastin gi|194121376|gb|EDW43419.1| GM26551 [Drosophila sechellia] Length = 758 Score = 39.7 bits (92), Expect = 0.40, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 72/186 (38%), Gaps = 34/186 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P++ ++L GP G+GK+ LA + + +T + A SL S + + ++ Sbjct: 515 PAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHM 574 Query: 113 ------LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL-KAA 165 ++++D L + H + + + L+ P + PD R+ A Sbjct: 575 QPSIIFIDEVDSLLSERSSSEH--EASRRLKTEFLVEFDGLPGN-----PD-GDRIVVLA 626 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 + D+ L + +++ D++ ++ R+ +K +D AL Sbjct: 627 ATNRPQELDEAALRRFTKRVYVS---LPDEQTRELLLNRL------LQKQGSPLDTEALR 677 Query: 226 RGMGIT 231 R IT Sbjct: 678 RLAKIT 683 >gi|190348879|gb|EDK41426.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC 6260] Length = 445 Score = 39.7 bits (92), Expect = 0.40, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + ++L GP G+GK+ A ++++ +T I L + ++ E Sbjct: 220 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 271 >gi|167524855|ref|XP_001746763.1| hypothetical protein [Monosiga brevicollis MX1] gi|163775033|gb|EDQ88659.1| predicted protein [Monosiga brevicollis MX1] Length = 437 Score = 39.7 bits (92), Expect = 0.40, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P + ++L GP G+GK+ A ++++ + I L + ++ E +L Sbjct: 212 PPKGILLYGPPGTGKTLCARAVANRTDAAFIRVIGSELVQKYVGEGARMVREIFELA 268 >gi|187922127|ref|YP_001893769.1| recombination factor protein RarA [Burkholderia phytofirmans PsJN] gi|187713321|gb|ACD14545.1| AAA ATPase central domain protein [Burkholderia phytofirmans PsJN] Length = 439 Score = 39.7 bits (92), Expect = 0.40, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 57/177 (32%), Gaps = 18/177 (10%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 IL GP G GK+ L + + + S + A I ++D + T L Sbjct: 52 FILWGPPGVGKTTLGRLAASATDSRFIAISAVLAGVKDIRQAIDEAQAELDNHGRS-TVL 110 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N + L+ T V L SR A V + Sbjct: 111 FVDEIHRFNKAQQDALLPHVESGLLTLVGGTTEHPGLAVNSA-LLSR---AQVYTLEPLS 166 Query: 175 DDFLEKVIVK-MFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 D L+++ + + + +D + + L++++ N A G + Sbjct: 167 GDELQQLYERARPHLQGVTLDADALDLLKGFADGDGRRFLNLLEQVTNAASGAGKAV 223 >gi|126437720|ref|YP_001073411.1| Mername-AA223 peptidase [Mycobacterium sp. JLS] gi|126237520|gb|ABO00921.1| membrane protease FtsH catalytic subunit [Mycobacterium sp. JLS] Length = 784 Score = 39.7 bits (92), Expect = 0.40, Method: Composition-based stats. Identities = 34/206 (16%), Positives = 62/206 (30%), Gaps = 65/206 (31%) Query: 22 KNKEEQLFFSFPRCL---GISRD----------DLLVHSAIEQAVRLIDSWPSWPSRVVI 68 K+K +QL P+ D D L + + QA+ P V+ Sbjct: 147 KSKAKQLSKDMPKTTFADVAGADEAVEELYEIKDFLQNPSRYQALG-----AKIPKGVL- 200 Query: 69 LVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKPVL 112 L GP G+GK+ LA + ++ S + + ++ + Sbjct: 201 LYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDMFEQAKQNSPSIIF 260 Query: 113 LEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSW------ 151 +++ID + + L + ++ +L+ A P Sbjct: 261 VDEIDAVGRQRGAGMGGGHDEREQTLNQLLVEMDGFGDRQGVILIAATNRPDILDPALLR 320 Query: 152 --------GVCLPDLCSRLKAATVVK 169 V PDL R +A V Sbjct: 321 PGRFDRQIPVTSPDLAGR-RAVLKVH 345 >gi|213972598|ref|NP_001093979.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Rattus norvegicus] gi|293341981|ref|XP_002725096.1| PREDICTED: proteasome (prosome, macropain) 26S subunit, ATPase, 6-like [Rattus norvegicus] gi|149033503|gb|EDL88301.1| rCG61291 [Rattus norvegicus] Length = 403 Score = 39.7 bits (92), Expect = 0.40, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + ++ S+ I ++ E Sbjct: 180 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 231 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 232 ------MFNYARDHQ 240 >gi|83589925|ref|YP_429934.1| vesicle-fusing ATPase [Moorella thermoacetica ATCC 39073] gi|83572839|gb|ABC19391.1| Vesicle-fusing ATPase [Moorella thermoacetica ATCC 39073] Length = 494 Score = 39.7 bits (92), Expect = 0.40, Method: Composition-based stats. Identities = 10/77 (12%), Positives = 24/77 (31%), Gaps = 14/77 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + ++L GP G+GK+ +A + + + + + + E Sbjct: 97 PLKGILLSGPPGTGKTLMARAAATYTDAVFLAASGSEFIEMYAGVGAQRVRE-------- 148 Query: 123 DTQLFHIINSIHQYDSS 139 + N + Sbjct: 149 ------LFNRARELARR 159 >gi|23502083|ref|NP_698210.1| recombination factor protein RarA [Brucella suis 1330] gi|161619161|ref|YP_001593048.1| recombination factor protein RarA [Brucella canis ATCC 23365] gi|254704491|ref|ZP_05166319.1| recombination factor protein RarA [Brucella suis bv. 3 str. 686] gi|260566265|ref|ZP_05836735.1| ATPase [Brucella suis bv. 4 str. 40] gi|261755173|ref|ZP_05998882.1| recombination factor protein RarA [Brucella suis bv. 3 str. 686] gi|23348042|gb|AAN30125.1| ATPase, AAA family [Brucella suis 1330] gi|161335972|gb|ABX62277.1| AAA ATPase central domain protein [Brucella canis ATCC 23365] gi|260155783|gb|EEW90863.1| ATPase [Brucella suis bv. 4 str. 40] gi|261744926|gb|EEY32852.1| recombination factor protein RarA [Brucella suis bv. 3 str. 686] Length = 437 Score = 39.7 bits (92), Expect = 0.40, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 59/181 (32%), Gaps = 28/181 (15%) Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDID 117 S ++ GP G+GK+ +A + + ++ + S I + + Sbjct: 49 ASGSLGSMVFWGPPGTGKTTVARLLAGETDLAFEQISAIFSGVADLKRVFEAA----RAR 104 Query: 118 LLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLK 163 + T LF H N + + +L+ T L SR Sbjct: 105 RMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVILIGATTENPSFELNAA---LLSR-- 159 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 A V+ D + + ++ + + +D + A +++ + A L +++ Sbjct: 160 -ARVLTFHPHDSESIATLLKRAEEQEGQALPLDDEARASLIRMADGDGRAALTLAEEVWR 218 Query: 222 L 222 Sbjct: 219 A 219 >gi|238496723|ref|XP_002379597.1| mitochondrial AAA ATPase, putative [Aspergillus flavus NRRL3357] gi|83769675|dbj|BAE59810.1| unnamed protein product [Aspergillus oryzae] gi|220694477|gb|EED50821.1| mitochondrial AAA ATPase, putative [Aspergillus flavus NRRL3357] Length = 954 Score = 39.7 bits (92), Expect = 0.40, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 17/30 (56%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 ++L GP G+GK+ LA + +S +T Sbjct: 683 PGLLLYGPPGTGKTLLAKAVARESGATVLE 712 >gi|66809637|ref|XP_638541.1| 26S protease regulatory subunit S10B [Dictyostelium discoideum AX4] gi|74996881|sp|Q54PJ1|PRS10_DICDI RecName: Full=26S protease regulatory subunit 10B; AltName: Full=26S proteasome AAA-ATPase subunit RPT4; AltName: Full=Proteasome 26S subunit ATPase 6 gi|60467149|gb|EAL65185.1| 26S protease regulatory subunit S10B [Dictyostelium discoideum AX4] Length = 393 Score = 39.7 bits (92), Expect = 0.40, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 22/48 (45%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 V+L GP G+GK+ LA + + ++ ++ I V+ E Sbjct: 174 VLLYGPPGTGKTLLARAIASNLEANFLKVVSSAIVDKYIGESARVIRE 221 >gi|319956008|ref|YP_004167271.1| holliday junction DNA helicase ruvb [Nitratifractor salsuginis DSM 16511] gi|319418412|gb|ADV45522.1| Holliday junction DNA helicase RuvB [Nitratifractor salsuginis DSM 16511] Length = 337 Score = 39.4 bits (91), Expect = 0.41, Method: Composition-based stats. Identities = 35/202 (17%), Positives = 73/202 (36%), Gaps = 31/202 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++ GP G GK+ LANI + + + + A ++ +E+ D+L ++ Sbjct: 55 ILFFGPPGLGKTTLANIIASEMGANIKTTAAPMIEKSGDLAALLTNIEEGDILFIDEI-- 112 Query: 127 FH---------IINSIHQYDSSLLMTARTFPVSWGVCLPD----------------LCSR 161 H + ++ Y +++ + + + LP L R Sbjct: 113 -HRMSPAIEEILYPAMEDYRLDIIIGSGPAAQAVKIDLPRFTLVGATTRAGMLSNPLRER 171 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-D 220 ++ + L K+I + I IDK A I +R + A +L+ ++ D Sbjct: 172 F--GMHFRMEFYTPEELAKIIEQAADKLGIGIDKDAALEIARRSRGTPRIALRLLRRVRD 229 Query: 221 NLALSRGMGITRSLAAEVLKET 242 ++ I+ A L + Sbjct: 230 FAEVAEEACISLETARYGLDQL 251 >gi|260578433|ref|ZP_05846347.1| ATP-dependent metalloprotease FtsH [Corynebacterium jeikeium ATCC 43734] gi|258603455|gb|EEW16718.1| ATP-dependent metalloprotease FtsH [Corynebacterium jeikeium ATCC 43734] Length = 796 Score = 39.4 bits (91), Expect = 0.41, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 69/206 (33%), Gaps = 49/206 (23%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110 R V+L GP G+GK+ LA + ++ F+ + + Sbjct: 202 RGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFKQAKENSP 261 Query: 111 --VLLEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGV 153 + +++ID + + L + ++ D +LM A P Sbjct: 262 CIIFVDEIDAVGRQRGAGMGGGHDEREQTLNQLLVEMDGFGDRDGVILMAATNRPDILDP 321 Query: 154 CL--------------PDLCSRLKAATVVKISLP--DDDFLEKVIVKMFADRQIFIDKKL 197 L PDL R + V + P D L+ + + ++ L Sbjct: 322 ALLRPGRFDRQIPVTNPDLAGREQILNVHAKNKPLAKDVDLKSLAKRTAGMSGADLENVL 381 Query: 198 --AAYIVQRMERSLVFAEKLVDKMDN 221 AA + R++ +++ A+ L + D Sbjct: 382 NEAALLTARVDGNVITADALEEATDR 407 >gi|256044856|ref|ZP_05447760.1| recombination factor protein RarA [Brucella melitensis bv. 1 str. Rev.1] gi|260565542|ref|ZP_05836026.1| ATPase [Brucella melitensis bv. 1 str. 16M] gi|265991283|ref|ZP_06103840.1| recombination factor protein RarA [Brucella melitensis bv. 1 str. Rev.1] gi|260151610|gb|EEW86704.1| ATPase [Brucella melitensis bv. 1 str. 16M] gi|263002067|gb|EEZ14642.1| recombination factor protein RarA [Brucella melitensis bv. 1 str. Rev.1] Length = 437 Score = 39.4 bits (91), Expect = 0.41, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 59/181 (32%), Gaps = 28/181 (15%) Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDID 117 S ++ GP G+GK+ +A + + ++ + S I + + Sbjct: 49 ASGSLGSMVFWGPPGTGKTTVARLLAGETDLAFEQISAIFSGVADLKRVFEAA----RAR 104 Query: 118 LLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLK 163 + T LF H N + + +L+ T L SR Sbjct: 105 RMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVILIGATTENPSFELNAA---LLSR-- 159 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 A V+ D + + ++ + + +D + A +++ + A L +++ Sbjct: 160 -ARVLTFHPHDSESIATLLKRAEEQEGQALPLDDEARASLIRMADGDGRAALTLAEEVWR 218 Query: 222 L 222 Sbjct: 219 A 219 >gi|229493645|ref|ZP_04387430.1| recombination factor protein RarA [Rhodococcus erythropolis SK121] gi|229319606|gb|EEN85442.1| recombination factor protein RarA [Rhodococcus erythropolis SK121] Length = 470 Score = 39.4 bits (91), Expect = 0.41, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 70/154 (45%), Gaps = 23/154 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G+GK+ LA++ S + RF ++ +L + + + R + L LL+ T L Sbjct: 83 VLLYGPPGTGKTTLASLISGATG-RRFEALS-ALSAGVKEVRGVIELARRRLLNGEQTVL 140 Query: 127 F----HIIN--------SIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H + + + LL+ A T S+ V L SR + V+++ Sbjct: 141 FIDEVHRFSKTQQDALLAAVENRIVLLVGATTENPSFSVVSA-LLSR---SLVLQLQSLT 196 Query: 175 DDFLEKVIVKMFAD-RQ----IFIDKKLAAYIVQ 203 +++++ + AD R I ID ++V+ Sbjct: 197 AADVQELLERAVADERGFGGAITIDDDAMEHLVR 230 >gi|282850967|ref|ZP_06260341.1| ABC transporter, ATP-binding protein [Lactobacillus gasseri 224-1] gi|282557919|gb|EFB63507.1| ABC transporter, ATP-binding protein [Lactobacillus gasseri 224-1] Length = 319 Score = 39.4 bits (91), Expect = 0.41, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 23/84 (27%) Query: 66 VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125 + +LVGPSGSGK+ L ++ + ++ T+ +LL+D + +++ + Sbjct: 29 IFVLVGPSGSGKTTLLKMF----------------NRLIEPTKGEILLDDKSIKEYDLRK 72 Query: 126 LFHIINSIHQYDSSLLMTARTFPV 149 L + +L TA FP Sbjct: 73 L-------REKTGYVLQTASLFPN 89 >gi|255588063|ref|XP_002534493.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223525196|gb|EEF27890.1| ATP-binding cassette transporter, putative [Ricinus communis] Length = 572 Score = 39.4 bits (91), Expect = 0.41, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 6/71 (8%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS----LDSILIDTRKPVLLEDI-- 116 P ++ ++GPSGSGKS L N + + + F+ + L+ ++ V +DI Sbjct: 4 PGEILAILGPSGSGKSTLLNAIAGRIQGNGFTGTVLANNKKLNKHILKRTGFVTQDDILY 63 Query: 117 DLLDFNDTQLF 127 L +T +F Sbjct: 64 PHLTVRETLIF 74 >gi|224125622|ref|XP_002329677.1| predicted protein [Populus trichocarpa] gi|222870585|gb|EEF07716.1| predicted protein [Populus trichocarpa] Length = 793 Score = 39.4 bits (91), Expect = 0.41, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 20/32 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P R ++L GP G+GK+ LA + ++ ++ + Sbjct: 514 PCRGILLFGPPGTGKTMLAKAIAKEAGASFIN 545 >gi|315230689|ref|YP_004071125.1| replication factor C large subunit [Thermococcus barophilus MP] gi|315183717|gb|ADT83902.1| replication factor C large subunit [Thermococcus barophilus MP] Length = 503 Score = 39.4 bits (91), Expect = 0.41, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 64/187 (34%), Gaps = 34/187 (18%) Query: 48 AIEQAVRLIDSWPSWPSRV--VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLD---- 101 A+E+ I W + ++L GP GSGK+ +++ + A Sbjct: 23 ALEKVEAWIKQWVHGTPKKKALLLAGPPGSGKTTTVYALANEYKFEVIELNASDERTFEK 82 Query: 102 -----------SILIDTRKPVLLEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTAR---T 146 I RK + L++ D ++ + ++ +I+ ++M A Sbjct: 83 IRRYLDAAYTMDIFGRRRKLIFLDEADNIEPSGAHEIAKLIDRARN---PIIMAANKYWE 139 Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206 P A VV+ + + + ++ IF+ K++ A I +R Sbjct: 140 VPAEIRNK----------AEVVEYKRLTQRDIMQALFRIIKAEGIFVPKEIVAEIAKRAS 189 Query: 207 RSLVFAE 213 L A Sbjct: 190 GDLRAAI 196 >gi|121715916|ref|XP_001275567.1| mitochondrial AAA ATPase, putative [Aspergillus clavatus NRRL 1] gi|119403724|gb|EAW14141.1| mitochondrial AAA ATPase, putative [Aspergillus clavatus NRRL 1] Length = 956 Score = 39.4 bits (91), Expect = 0.41, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 17/30 (56%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 ++L GP G+GK+ LA + +S +T Sbjct: 685 PGLLLYGPPGTGKTLLAKAVARESGATVLE 714 >gi|116333674|ref|YP_795201.1| primosomal protein DnaI [Lactobacillus brevis ATCC 367] gi|116099021|gb|ABJ64170.1| Replicative DNA helicase loader DnaI [Lactobacillus brevis ATCC 367] Length = 308 Score = 39.4 bits (91), Expect = 0.41, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 3/70 (4%) Query: 46 HSAIEQAVRLIDSWPSWPSRV---VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 A+ A+ ID++ + P R + L G G GK+ L +++ + FS S Sbjct: 136 AEALMAALDFIDAYEASPKRRHQALYLSGSFGVGKTYLLAAVANQLAADGFSTTLVHFPS 195 Query: 103 ILIDTRKPVL 112 ++ + + Sbjct: 196 FAVEMKNAIA 205 >gi|115384146|ref|XP_001208620.1| conserved hypothetical protein [Aspergillus terreus NIH2624] gi|114196312|gb|EAU38012.1| conserved hypothetical protein [Aspergillus terreus NIH2624] Length = 956 Score = 39.4 bits (91), Expect = 0.41, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 17/30 (56%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 ++L GP G+GK+ LA + +S +T Sbjct: 683 PGLLLYGPPGTGKTLLAKAVARESGATVLE 712 >gi|47226373|emb|CAG09341.1| unnamed protein product [Tetraodon nigroviridis] Length = 631 Score = 39.4 bits (91), Expect = 0.41, Method: Composition-based stats. Identities = 35/203 (17%), Positives = 69/203 (33%), Gaps = 49/203 (24%) Query: 47 SAIEQAVRLIDSWPSWP-------------SRVVILVGPSGSGKSCLANIWSDKSRSTRF 93 + ++ A I WP R ++L GP G+G++ LA+ + + + Sbjct: 362 AGLDMAKAAIKEEILWPILRSDMFSGLAALPRSLLLFGPQGTGRTLLAHCMASQLGAAFL 421 Query: 94 SNIAKSLDS--------------ILIDTRKPVLL--------------EDIDLLDFNDTQ 125 + +L + ++ R+P ++ ED L Sbjct: 422 QLNSSALVTKWLGKGDKIIQASFLVARCRQPAVVFIKEVDLLLSAQLGEDSPLSRLKAEL 481 Query: 126 LFHIINSIHQYDSSLLMTART-FPVSWGVCLPD-LCSRLKAATVVKISLPDDDFLEKVIV 183 L + + + + +L+ T P L RL I LPD ++I Sbjct: 482 LMQLDSILTSAEDHVLVVCSTNKPEEIPEALRRYFTKRLL------IPLPDGTARHQIIT 535 Query: 184 KMFADRQIFIDKKLAAYIVQRME 206 ++ + + K + +VQR E Sbjct: 536 QLLSQHNYCLSDKEMSLLVQRTE 558 >gi|62290117|ref|YP_221910.1| recombination factor protein RarA [Brucella abortus bv. 1 str. 9-941] gi|82700040|ref|YP_414614.1| recombination factor protein RarA [Brucella melitensis biovar Abortus 2308] gi|189024355|ref|YP_001935123.1| recombination factor protein RarA [Brucella abortus S19] gi|254689426|ref|ZP_05152680.1| recombination factor protein RarA [Brucella abortus bv. 6 str. 870] gi|254693911|ref|ZP_05155739.1| recombination factor protein RarA [Brucella abortus bv. 3 str. Tulya] gi|254697561|ref|ZP_05159389.1| recombination factor protein RarA [Brucella abortus bv. 2 str. 86/8/59] gi|254730455|ref|ZP_05189033.1| recombination factor protein RarA [Brucella abortus bv. 4 str. 292] gi|256257672|ref|ZP_05463208.1| recombination factor protein RarA [Brucella abortus bv. 9 str. C68] gi|260546665|ref|ZP_05822404.1| ATPase [Brucella abortus NCTC 8038] gi|260754949|ref|ZP_05867297.1| recombination factor protein RarA [Brucella abortus bv. 6 str. 870] gi|260758165|ref|ZP_05870513.1| recombination factor protein RarA [Brucella abortus bv. 4 str. 292] gi|260761991|ref|ZP_05874334.1| recombination factor protein RarA [Brucella abortus bv. 2 str. 86/8/59] gi|260883958|ref|ZP_05895572.1| recombination factor protein RarA [Brucella abortus bv. 9 str. C68] gi|261214202|ref|ZP_05928483.1| recombination factor protein RarA [Brucella abortus bv. 3 str. Tulya] gi|297248512|ref|ZP_06932230.1| recombination factor protein RarA [Brucella abortus bv. 5 str. B3196] gi|62196249|gb|AAX74549.1| ATPase, AAA family [Brucella abortus bv. 1 str. 9-941] gi|82616141|emb|CAJ11184.1| Shikimate kinase:Replication factor C conserved domain:ATP/GTP-binding site motif A (P-loop):AAA ATPase:AAA ATPase, central r [Brucella melitensis biovar Abortus 2308] gi|189019927|gb|ACD72649.1| ATPase, AAA family [Brucella abortus S19] gi|260095715|gb|EEW79592.1| ATPase [Brucella abortus NCTC 8038] gi|260668483|gb|EEX55423.1| recombination factor protein RarA [Brucella abortus bv. 4 str. 292] gi|260672423|gb|EEX59244.1| recombination factor protein RarA [Brucella abortus bv. 2 str. 86/8/59] gi|260675057|gb|EEX61878.1| recombination factor protein RarA [Brucella abortus bv. 6 str. 870] gi|260873486|gb|EEX80555.1| recombination factor protein RarA [Brucella abortus bv. 9 str. C68] gi|260915809|gb|EEX82670.1| recombination factor protein RarA [Brucella abortus bv. 3 str. Tulya] gi|297175681|gb|EFH35028.1| recombination factor protein RarA [Brucella abortus bv. 5 str. B3196] Length = 437 Score = 39.4 bits (91), Expect = 0.41, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 59/181 (32%), Gaps = 28/181 (15%) Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDID 117 S ++ GP G+GK+ +A + + ++ + S I + + Sbjct: 49 ASGSLGSMVFWGPPGTGKTTVARLLAGETDLAFEQISAIFSGVADLKRVFEAA----RAR 104 Query: 118 LLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLK 163 + T LF H N + + +L+ T L SR Sbjct: 105 RMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVILIGATTENPSFELNAA---LLSR-- 159 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 A V+ D + + ++ + + +D + A +++ + A L +++ Sbjct: 160 -ARVLTFHPHDSESIATLLKRAEEQEGQALPLDDEARASLIRMADGDGRAALTLAEEVWR 218 Query: 222 L 222 Sbjct: 219 A 219 >gi|52081252|ref|YP_080043.1| Holliday junction DNA helicase RuvB [Bacillus licheniformis ATCC 14580] gi|52786632|ref|YP_092461.1| Holliday junction DNA helicase RuvB [Bacillus licheniformis ATCC 14580] gi|319644781|ref|ZP_07999014.1| Holliday junction DNA helicase ruvB [Bacillus sp. BT1B_CT2] gi|59800222|sp|Q65GP6|RUVB_BACLD RecName: Full=Holliday junction DNA helicase ruvB gi|52004463|gb|AAU24405.1| Holliday junction DNA helicase [Bacillus licheniformis ATCC 14580] gi|52349134|gb|AAU41768.1| RuvB [Bacillus licheniformis ATCC 14580] gi|317392590|gb|EFV73384.1| Holliday junction DNA helicase ruvB [Bacillus sp. BT1B_CT2] Length = 334 Score = 39.4 bits (91), Expect = 0.41, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 27/62 (43%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G GK+ LA I +++ + +++ LE D+L ++ Sbjct: 56 VLLYGPPGLGKTTLAAIIANEMGVNLRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHR 115 Query: 127 FH 128 H Sbjct: 116 LH 117 >gi|33862949|ref|NP_894509.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus str. MIT 9313] gi|33634866|emb|CAE20852.1| FtsH ATP-dependent protease homolog [Prochlorococcus marinus str. MIT 9313] Length = 638 Score = 39.4 bits (91), Expect = 0.41, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 68/206 (33%), Gaps = 45/206 (21%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110 R V+LVGP G+GK+ LA + ++ FS + + Sbjct: 215 RGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFVEMFVGVGASRVRDLFKRAKENTP 274 Query: 111 --VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGV 153 + +++ID + ND QL ++ +++ A P Sbjct: 275 CLIFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEGNSGIIIIAATNRPDVLDS 334 Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L ++ V + PD ++ D+++ D L + +R Sbjct: 335 AL------MRPGRFDRQVSVDAPDIKGRLAILEVHARDKKLEEDLSLKN-VARRTP-GFT 386 Query: 211 FAEKLVDKMDNLAL--SRGMGITRSL 234 A L + ++ A+ +R SL Sbjct: 387 GA-DLANLLNEAAILTARRRKKAISL 411 >gi|332288868|ref|YP_004419720.1| ATP-dependent protease ATP-binding subunit ClpX [Gallibacterium anatis UMN179] gi|330431764|gb|AEC16823.1| ATP-dependent protease ATP-binding subunit ClpX [Gallibacterium anatis UMN179] Length = 415 Score = 39.4 bits (91), Expect = 0.41, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 46/127 (36%), Gaps = 21/127 (16%) Query: 8 YSFFVPDKQKNDQPKNKEEQL-FFSFPRCLGISRDDLLVHSAIE------QAVRLIDSWP 60 + + + K+ + + +E+ L P + DD ++ Sbjct: 43 HDLLMEEANKHQKEQEQEKPLEKLPTPHQIRAHLDDYVIGQDQAKKILSVAVYNHYKRLR 102 Query: 61 SWPS--------RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 + + ++L+GP+GSGK+ LA + + N+ ++ T + Sbjct: 103 NNETDLDVELGKSNILLIGPTGSGKTLLAQTLARQ------INVPFAIADATTLTEAGYV 156 Query: 113 LEDIDLL 119 ED++ + Sbjct: 157 GEDVENI 163 >gi|304439281|ref|ZP_07399198.1| replicative DNA helicase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372249|gb|EFM25838.1| replicative DNA helicase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 291 Score = 39.4 bits (91), Expect = 0.41, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 19/96 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK----------------P 110 +IL+G G GK+ LA+ ++ S + IL D Sbjct: 140 LILIGNVGCGKTYLASAIANALLEKEISVKMTNFSVILNDMTNFEIDKSKYIDNLNHKKL 199 Query: 111 VLLEDIDLLDFNDTQLFHIINSI---HQYDSSLLMT 143 ++++D + D HI N I ++ L++T Sbjct: 200 LIIDDFGMERDTDFAAEHIFNIIDSRYRSGKPLIIT 235 >gi|303233589|ref|ZP_07320247.1| conserved hypothetical protein [Finegoldia magna BVS033A4] gi|302495333|gb|EFL55081.1| conserved hypothetical protein [Finegoldia magna BVS033A4] Length = 285 Score = 39.4 bits (91), Expect = 0.41, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 19/96 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK----------------P 110 +IL+G G GK+ LA+ ++ S + IL D Sbjct: 134 LILIGNVGCGKTYLASAIANALLEKEISVKMTNFSVILNDMTNFEIDKSKYIDNLNHKKL 193 Query: 111 VLLEDIDLLDFNDTQLFHIINSI---HQYDSSLLMT 143 ++++D + D HI N I ++ L++T Sbjct: 194 LIIDDFGMERDTDFAAEHIFNIIDSRYRSGKPLIIT 229 >gi|296119822|ref|ZP_06838376.1| putative transposase [Corynebacterium ammoniagenes DSM 20306] gi|295966976|gb|EFG80247.1| putative transposase [Corynebacterium ammoniagenes DSM 20306] Length = 253 Score = 39.4 bits (91), Expect = 0.41, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 51/149 (34%), Gaps = 38/149 (25%) Query: 58 SWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI-------------- 103 +W P+ V +L P+G+GK+ +A + +S LD + Sbjct: 99 NWRETPTNVHLLA-PTGTGKTYIACAIGIAACHAGYSVAYFRLDQLVDALAVFLPADKRY 157 Query: 104 -----LIDTRKPVLLEDIDLLDFNDTQ-------LFHIINSIHQYDSSLLMTARTFPVSW 151 L+ ++L+D + N +F S ++T++T W Sbjct: 158 IDLVRLLQNVDVLILDDFLTIGINQRWQEDLTKIIFD-----RDGQSPTIVTSQTSAAYW 212 Query: 152 GVCLPD------LCSRLKAATVVKISLPD 174 LPD L SRL + + D Sbjct: 213 LESLPDRVGADSLVSRLNSGQRISTGDYD 241 >gi|295109221|emb|CBL23174.1| ATPase related to the helicase subunit of the Holliday junction resolvase [Ruminococcus obeum A2-162] Length = 439 Score = 39.4 bits (91), Expect = 0.41, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 61/175 (34%), Gaps = 34/175 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS-----NIAKSLDSILIDTRKPVLLEDIDLLDF 121 VI GP G+GK+ LA + + + + K ++ ++ + + + + Sbjct: 55 VIFYGPPGTGKTTLAKVIAHTTSANFTQINATVAGKKDMEQVVQEAQNNL------GMYG 108 Query: 122 NDTQLF----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 T LF H N + + +L+ A T + V L SR + + + Sbjct: 109 RKTILFIDEIHRFNKGQQDYLLPFVEDGTIILIGATTENPYFEVNGA-LLSR---SIIFE 164 Query: 170 ISLPDDDFLEKVIVKMFA--DRQI-----FIDKKLAAYIVQRMERSLVFAEKLVD 217 + + + ++++ DR + ID ++ A V+ Sbjct: 165 LKALSTENIRTLLLRAVNDCDRGMGNYGAVIDNDALDFLADMAGGDARSALNAVE 219 >gi|295100781|emb|CBK98326.1| Recombination protein MgsA [Faecalibacterium prausnitzii L2-6] Length = 424 Score = 39.4 bits (91), Expect = 0.41, Method: Composition-based stats. Identities = 41/202 (20%), Positives = 78/202 (38%), Gaps = 35/202 (17%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTR------------FSNIAKSLDSILIDTRKPVL 112 +I GPSG+GK+ +A I ++ S T + K + ++ + Sbjct: 40 PNMIFYGPSGTGKTTVARIIAENSGMTLHKLNGTSCGTGDIKAVLKDIGTLAGAGGILLY 99 Query: 113 LEDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK-- 169 L++I L+ L I + S L+ + T + + L SR TV + Sbjct: 100 LDEIQYLNKKQQQSLLECI----EDGSVTLIASTTENPYFYIYNA-LLSR---CTVFEFK 151 Query: 170 -ISLPD-DDFLEKVIVKMF-ADRQ-IFIDKKLAAYIVQRMERSLVFAEKLVDKMD---NL 222 +S D + + + K+ ++ Q + +D+ AY+ E + K + +D Sbjct: 152 SLSAADVERGIRNALKKLSESESQPVVMDEDACAYLA---ESAGGDLRKALGCLDFVVTA 208 Query: 223 AL--SRGMGITRSLAAEVLKET 242 A G IT + +V + T Sbjct: 209 APVDGTGKHITLEMIQQVTRRT 230 >gi|294631641|ref|ZP_06710201.1| cell division protein FtsH [Streptomyces sp. e14] gi|292834974|gb|EFF93323.1| cell division protein FtsH [Streptomyces sp. e14] Length = 644 Score = 39.4 bits (91), Expect = 0.41, Method: Composition-based stats. Identities = 36/224 (16%), Positives = 77/224 (34%), Gaps = 60/224 (26%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110 R V+L GP G+GK+ LA + ++ FS A +++ Sbjct: 203 RGVLLTGPPGTGKTLLARAVAGEAGVPFFSASASEFIEMIVGVGASRVRELFAEARKVAP 262 Query: 111 --VLLEDIDLLDF-----------NDTQLFHIINSIH--------QYDSSLLMTARTF-- 147 + +++ID + ++ + +N I +L Sbjct: 263 SIIFIDEIDTIGRARGGGASMGGHDERE--QTLNQILTEMDGFSGSEGVIVLAATNRADV 320 Query: 148 --PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRM 205 P D R+ V+++ PD E ++ R+I + + + R+ Sbjct: 321 LDPALTRPGRFD---RM-----VQVAPPDRGGREAIL--RIHTREIPLAPDVD---LNRV 367 Query: 206 ERSLVFA--EKLVDKMDNLAL----SRGMGITRSLAAEVLKETQ 243 R+ +L + + AL R +T++ ++ L++ Q Sbjct: 368 ARTTPGMTGAELANLANEAALLAVKRRQRQVTQTDFSQALEKVQ 411 >gi|259147695|emb|CAY80945.1| Rpt1p [Saccharomyces cerevisiae EC1118] Length = 467 Score = 39.4 bits (91), Expect = 0.41, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + ++L GP G+GK+ A ++++ +T I L + ++ E Sbjct: 242 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGTELVQKYVGEGARMVRE 293 >gi|296804514|ref|XP_002843109.1| conserved hypothetical protein [Arthroderma otae CBS 113480] gi|238845711|gb|EEQ35373.1| conserved hypothetical protein [Arthroderma otae CBS 113480] Length = 772 Score = 39.4 bits (91), Expect = 0.41, Method: Composition-based stats. Identities = 40/239 (16%), Positives = 70/239 (29%), Gaps = 51/239 (21%) Query: 33 PRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTR 92 P S DD++V + +L GP G GK+ A +D R Sbjct: 544 PGSEKSSFDDIVVGKGKGL--------------IFLLYGPPGVGKTLTAESTADLLRRPL 589 Query: 93 FSNIAKSLDSILIDTRKP--------------VLLEDID-------LLDFNDTQLFHIIN 131 +S A D +LL++ D L L + Sbjct: 590 YSACAGDFGIKTEDLEGHLSRVLDLVRRWDAILLLDEADVFLSERSLQGLQHNALVSVFL 649 Query: 132 SIHQ--YDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 + L T R P + SR+ ++ D +V K ++ Sbjct: 650 RSLEYFEGIMFLTTNRHS-----TLDPAMQSRIH--VSIRYESLSKDAKARVWKKQLSNA 702 Query: 190 QIFIDKKLAAYIVQRME--RSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 I ++ + R + + AL++G +T + LK ++ D Sbjct: 703 GAKISGTELERLLNKSSNGRQIKNIARA-----AFALAKGRTVTITHIETALKCAEEFD 756 >gi|257057516|ref|YP_003135348.1| membrane protease FtsH catalytic subunit [Saccharomonospora viridis DSM 43017] gi|256587388|gb|ACU98521.1| membrane protease FtsH catalytic subunit [Saccharomonospora viridis DSM 43017] Length = 798 Score = 39.4 bits (91), Expect = 0.41, Method: Composition-based stats. Identities = 41/239 (17%), Positives = 74/239 (30%), Gaps = 55/239 (23%) Query: 22 KNKEEQLFFSFPRCL---GISRD----------DLLVHSAIEQAVRLIDSWPSWPSRVVI 68 K K +QL P D D L + A QA+ P V+ Sbjct: 155 KAKAKQLSKDMPTTTFKDVAGADEAVEELQEIKDFLQNPARYQALG-----AKIPKGVL- 208 Query: 69 LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP----------------VL 112 L GP G+GK+ LA + ++ ++ + + + Sbjct: 209 LYGPPGTGKTLLARAVAGEAGVPFYTISGSDFVEMFVGVGASRVRDLFEQAKQNAPCIIF 268 Query: 113 LEDIDLLDFNDTQLF---HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 +++ID + H + + +L V + SR + Sbjct: 269 VDEIDAVGRQRGAGLGGGH-----DEREQTL--------NQLLVEMDGFDSRGGIILIAA 315 Query: 170 ISLPDDDFLEKVIVKMFADRQIFID-KKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 + PD ++ DRQI + L +R+ + L D +D AL++ Sbjct: 316 TNRPD-ILDPALLRPGRFDRQIPVSAPDLVGR--RRILEVHSKGKPLADNVDLEALAKR 371 >gi|224088822|ref|XP_002308554.1| predicted protein [Populus trichocarpa] gi|222854530|gb|EEE92077.1| predicted protein [Populus trichocarpa] Length = 723 Score = 39.4 bits (91), Expect = 0.41, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 72/208 (34%), Gaps = 48/208 (23%) Query: 59 WPSWPSRV----------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTR 108 +P W SR V+LVGP G+GK+ LA + ++ FS + + + Sbjct: 250 FPLWSSRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVG 309 Query: 109 K----------------PVLLEDIDLLDFND------------TQLFHIINSIHQYDSSL 140 + +++ID + + QL ++ Q + + Sbjct: 310 ARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGII 369 Query: 141 LMTARTFPVSWGVCL--PDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198 ++ A FP S L P R + + PD + +++ + I + + Sbjct: 370 VIAATNFPESLDKALVRP---GRFD--RHIVVPNPDVEGRRQIMESHMSK--ILKGEDVD 422 Query: 199 AYIVQRMERSLVFAEKLVDKMDNLALSR 226 I+ R A L + ++ AL Sbjct: 423 LMIIARGTPGFSGA-DLANLVNIAALKA 449 >gi|222086969|ref|YP_002545503.1| cell division metalloproteinase protein [Agrobacterium radiobacter K84] gi|221724417|gb|ACM27573.1| cell division metalloproteinase protein [Agrobacterium radiobacter K84] Length = 647 Score = 39.4 bits (91), Expect = 0.41, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 65/199 (32%), Gaps = 43/199 (21%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110 R V+LVGP G+GK+ LA + ++ F+ + + Sbjct: 192 RGVLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAP 251 Query: 111 --VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGV 153 + +++ID + D + L + ++ + +L+ A P Sbjct: 252 CIIFIDEIDAVGRHRGAGLGGGNDEREQTLNQLLVEMDGFEANEGIILIAATNRPDVLDP 311 Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L+ V + PD E+++ R + + + + R Sbjct: 312 AL------LRPGRFDRQVVVPNPDIIGRERILKVHA--RNVPLAPNVDLKTLARGTPGFS 363 Query: 211 FAEKLVDKMDNLALSRGMG 229 A L++ ++ AL Sbjct: 364 GA-DLMNLVNEAALMAARR 381 >gi|171690992|ref|XP_001910421.1| hypothetical protein [Podospora anserina S mat+] gi|170945444|emb|CAP71556.1| unnamed protein product [Podospora anserina S mat+] Length = 460 Score = 39.4 bits (91), Expect = 0.41, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 20/45 (44%) Query: 70 VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 GP G+GK+ LA + ++ +T L + I ++ + Sbjct: 247 YGPPGTGKTLLARACAAQTDATFLKLAGPQLVQMFIGDGAKLVRD 291 >gi|115970841|ref|XP_001190601.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] Length = 414 Score = 39.4 bits (91), Expect = 0.41, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 43/144 (29%), Gaps = 45/144 (31%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109 P + V+L GP G+GK+ A ++++ + I L + Sbjct: 189 PPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARGK 248 Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147 + ++ID + + +IN + + + +LM Sbjct: 249 KACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 308 Query: 148 ------PVSW----GVCLPDLCSR 161 P LPDL R Sbjct: 309 DPALVRPGRLDRKVEFGLPDLEGR 332 >gi|50547001|ref|XP_500970.1| YALI0B16368p [Yarrowia lipolytica] gi|49646836|emb|CAG83223.1| YALI0B16368p [Yarrowia lipolytica] Length = 428 Score = 39.4 bits (91), Expect = 0.41, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 22/38 (57%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P ++L GP G+GKS LA + ++ ST FS + L Sbjct: 158 PLSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 195 >gi|67469879|ref|XP_650911.1| cdc48-like protein [Entamoeba histolytica HM-1:IMSS] gi|56467577|gb|EAL45523.1| cdc48-like protein, putative [Entamoeba histolytica HM-1:IMSS] Length = 772 Score = 39.4 bits (91), Expect = 0.41, Method: Composition-based stats. Identities = 31/190 (16%), Positives = 59/190 (31%), Gaps = 40/190 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106 PS+ V+ GP G GK+ LA + + ++ S N+ D Sbjct: 509 PSKGVLFFGPPGCGKTLLAKAVASQCKANFISIKGPELLTMWYGESEANVRDVFDKARQA 568 Query: 107 TRKPVLLEDIDLLDFND---------------TQLFHIINSIHQYDSSLLMTARTFPVSW 151 + +++D + QL ++ + + ++ A P Sbjct: 569 APCVLFFDELDSIGRARGGGAGDAGGSADRILNQLLTEMDGVGKKKQVFIIGATNRPDIL 628 Query: 152 GVCLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMER-S 208 L L RL I LPD ++ R + + +I + E S Sbjct: 629 DPAL--LRPGRLDQLLF--IPLPDKASRISILQ--AKLRNSPVAPDVDLDWIAEHTENFS 682 Query: 209 LVFAEKLVDK 218 ++V + Sbjct: 683 GADLAEIVQR 692 Score = 39.0 bits (90), Expect = 0.62, Method: Composition-based stats. Identities = 23/164 (14%), Positives = 59/164 (35%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P + V+L GP G GK+ +A ++++ N+ ++ + Sbjct: 236 PPKGVLLYGPPGCGKTMIARAVANETGVFLILINGPEIMSKMAGESEGNLREAFAEAEKN 295 Query: 107 TRKPVLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + + ++M A P + Sbjct: 296 APALIFIDEIDSIAPKRDKAQGEVERRVVAQLLTLMDGMKSRSNVIVMAATNRPNAIDSA 355 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 L R + + I +PD+ +++ +++ I + Sbjct: 356 LR----RFGRFDREIDIGVPDETGRLEIL--NIHTKKMKIADDV 393 >gi|303391184|ref|XP_003073822.1| 26S proteasome regulatory subunit 6A [Encephalitozoon intestinalis ATCC 50506] gi|303302970|gb|ADM12462.1| 26S proteasome regulatory subunit 6A [Encephalitozoon intestinalis ATCC 50506] Length = 401 Score = 39.4 bits (91), Expect = 0.41, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V++ GP G+GK+ +A + K+ +T L + I ++ + Sbjct: 181 PPKGVLMYGPPGTGKTLMARACASKTNATFLKLAGPQLVQMYIGDGARLVRD 232 >gi|301117244|ref|XP_002906350.1| spastin and Fidgetin-like protein [Phytophthora infestans T30-4] gi|262107699|gb|EEY65751.1| spastin and Fidgetin-like protein [Phytophthora infestans T30-4] Length = 410 Score = 39.4 bits (91), Expect = 0.41, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 30/50 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P R V+L GP G+GK+ LA + ++++T F+ A SL S + + ++ Sbjct: 169 PPRGVLLFGPPGTGKTLLAKAVATEAKATFFNISASSLTSKWVGEGEKLV 218 >gi|154309232|ref|XP_001553950.1| hypothetical protein BC1G_07510 [Botryotinia fuckeliana B05.10] gi|150852334|gb|EDN27526.1| hypothetical protein BC1G_07510 [Botryotinia fuckeliana B05.10] Length = 823 Score = 39.4 bits (91), Expect = 0.41, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 65/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R V++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 255 PPRGVLMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 314 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + + ++M A P S Sbjct: 315 SPAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSID-- 372 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + V I +PD +++ + + + + + Sbjct: 373 -PALR-RFGRFDREVDIGIPDPTGRLEILQ--IHTKNMKLGEDV 412 >gi|157130112|ref|XP_001655566.1| spastin [Aedes aegypti] gi|108884449|gb|EAT48674.1| spastin [Aedes aegypti] Length = 338 Score = 39.4 bits (91), Expect = 0.41, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 29/50 (58%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P++ ++L GP G+GK+ LA + + +T FS A +L S + + ++ Sbjct: 146 PAKGLLLFGPPGNGKTLLARAVATECSATFFSISAATLTSKYVGDGEKLV 195 >gi|85373214|ref|YP_457276.1| recombination factor protein RarA [Erythrobacter litoralis HTCC2594] gi|84786297|gb|ABC62479.1| ATPase [Erythrobacter litoralis HTCC2594] Length = 440 Score = 39.4 bits (91), Expect = 0.41, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 6/75 (8%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G+GK+ A + +D RF I+ + D +K D T L Sbjct: 60 MVLWGPPGTGKTSTARLLADAVG-MRFVAISAVFSGVA-DLKKAFAEADRMAAAGRKTLL 117 Query: 127 F----HIINSIHQYD 137 F H N Q Sbjct: 118 FVDEIHRFNRAQQDG 132 >gi|88808710|ref|ZP_01124220.1| cell division protein FtsH4 [Synechococcus sp. WH 7805] gi|88787698|gb|EAR18855.1| cell division protein FtsH4 [Synechococcus sp. WH 7805] Length = 620 Score = 39.4 bits (91), Expect = 0.41, Method: Composition-based stats. Identities = 37/210 (17%), Positives = 71/210 (33%), Gaps = 43/210 (20%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110 R V+LVGP G+GK+ LA + ++ FS A + + Sbjct: 192 RGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLAASEFVELFVGVGASRVRDLFRKAKEKSP 251 Query: 111 --VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGV 153 V +++ID + ND QL ++ +L+ A Sbjct: 252 CIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFADNSGVILLAATNRADVLDT 311 Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L ++ + + LPD E ++ R + + LA + +R Sbjct: 312 AL------MRPGRFDRRIAVGLPDRKGREAILAVHARTRPLAEEVSLADW-ARRTP-GFS 363 Query: 211 FAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 A L + ++ A+ + +L + L+ Sbjct: 364 GA-DLANLLNEAAILTARHQSTTLGNKELE 392 >gi|332372578|gb|AEE61431.1| unknown [Dendroctonus ponderosae] Length = 424 Score = 39.4 bits (91), Expect = 0.42, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PSR V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 123 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKA 179 >gi|330508645|ref|YP_004385073.1| AAA family ATPase [Methanosaeta concilii GP-6] gi|328929453|gb|AEB69255.1| AAA family ATPase, CDC48 subfamily [Methanosaeta concilii GP-6] Length = 725 Score = 39.4 bits (91), Expect = 0.42, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 41/117 (35%), Gaps = 28/117 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106 P R V+L GP G+GK+ +A + ++ + S + + D Sbjct: 214 PPRGVLLHGPPGTGKTLIARAVAGETDANFISISGPEIVSKFYGESEQRLRQIFDEASKA 273 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSW 151 + +++ID + Q+ +++ + +++ A P + Sbjct: 274 APSIIFIDEIDSIAPKREEVSGDLERRVVAQILSLMDGLSSRGEVIVIAATNRPNAL 330 >gi|330840857|ref|XP_003292425.1| hypothetical protein DICPUDRAFT_92867 [Dictyostelium purpureum] gi|325077347|gb|EGC31066.1| hypothetical protein DICPUDRAFT_92867 [Dictyostelium purpureum] Length = 405 Score = 39.4 bits (91), Expect = 0.42, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120 P R V+L GP G+GK+ LA + + + + + P L+ D+ L Sbjct: 185 PPRGVLLYGPPGTGKTMLAKAVAHHTSAAFIRVVGSEFVQKYL-GEGPRLVRDVFRLA 241 >gi|313888105|ref|ZP_07821779.1| DNA replication protein DnaC family protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845795|gb|EFR33182.1| DNA replication protein DnaC family protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 285 Score = 39.4 bits (91), Expect = 0.42, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 19/96 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK----------------P 110 +IL G G GK+ LA+ ++ S + IL D Sbjct: 134 LILTGNVGCGKTYLASAIANALLEKEISVKMTNFSVILNDMTNFEIDKSKYIDNLNHKKL 193 Query: 111 VLLEDIDLLDFNDTQLFHIINSI---HQYDSSLLMT 143 ++++D + D HI N I ++ L++T Sbjct: 194 LIIDDFGMERDTDFAAEHIFNIIDSRYRSGKPLIIT 229 >gi|302143742|emb|CBI22603.3| unnamed protein product [Vitis vinifera] Length = 837 Score = 39.4 bits (91), Expect = 0.42, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 21/32 (65%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P R ++L GP G+GK+ LA ++++ ++ + Sbjct: 557 PCRGILLFGPPGTGKTMLAKAIANEAGASFIN 588 >gi|261885273|ref|ZP_06009312.1| Holliday junction DNA helicase RuvB [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 318 Score = 39.4 bits (91), Expect = 0.42, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 28/58 (48%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 V+ GP G GK+ LA+I +++ + + A ++ LE+ D+L ++ Sbjct: 55 VLFYGPPGLGKTTLAHIIANEMGANIKISSAPMIEKSGDLAAILTNLEEGDVLFIDEI 112 >gi|297564905|ref|YP_003683877.1| ATP-dependent metalloprotease FtsH [Meiothermus silvanus DSM 9946] gi|296849354|gb|ADH62369.1| ATP-dependent metalloprotease FtsH [Meiothermus silvanus DSM 9946] Length = 626 Score = 39.4 bits (91), Expect = 0.42, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 22/48 (45%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 V+LVGP GSGK+ +A + +++ + + + + + Sbjct: 190 VLLVGPPGSGKTHIARAVAGEAKVPFITASGSDFVEMFVGVGAARVRD 237 >gi|227486513|ref|ZP_03916829.1| DNA replication protein [Anaerococcus lactolyticus ATCC 51172] gi|227235516|gb|EEI85531.1| DNA replication protein [Anaerococcus lactolyticus ATCC 51172] Length = 291 Score = 39.4 bits (91), Expect = 0.42, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 19/96 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK----------------P 110 +IL G G GK+ LA+ ++ S + IL D Sbjct: 140 LILTGNVGCGKTYLASAIANALLEKEISVKMTNFSVILNDMTNFEIDKSKYIDNLNHKKL 199 Query: 111 VLLEDIDLLDFNDTQLFHIINSI---HQYDSSLLMT 143 ++++D + D HI N I ++ L++T Sbjct: 200 LIIDDFGMERDTDFAAEHIFNIIDSRYRSGKPLIIT 235 >gi|227500552|ref|ZP_03930601.1| DNA replication protein [Anaerococcus tetradius ATCC 35098] gi|227217344|gb|EEI82676.1| DNA replication protein [Anaerococcus tetradius ATCC 35098] Length = 294 Score = 39.4 bits (91), Expect = 0.42, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 19/96 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK----------------P 110 +IL G G GK+ LA+ ++ S + IL D Sbjct: 140 LILTGNVGCGKTYLASAIANALLEKEISVKMTNFSVILNDMTNFEIDKSKYIDNLNHKKL 199 Query: 111 VLLEDIDLLDFNDTQLFHIINSI---HQYDSSLLMT 143 ++++D + D HI N I ++ L++T Sbjct: 200 LIIDDFGMERDTDFAAEHIFNIIDSRYRSGKPLIIT 235 >gi|195573329|ref|XP_002104646.1| GD21056 [Drosophila simulans] gi|229559930|sp|B4QSF0|SPAST_DROSI RecName: Full=Spastin gi|194200573|gb|EDX14149.1| GD21056 [Drosophila simulans] Length = 758 Score = 39.4 bits (91), Expect = 0.42, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 72/186 (38%), Gaps = 34/186 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P++ ++L GP G+GK+ LA + + +T + A SL S + + ++ Sbjct: 515 PAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHM 574 Query: 113 ------LEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRL-KAA 165 ++++D L + H + + + L+ P + PD R+ A Sbjct: 575 QPSIIFIDEVDSLLSERSSSEH--EASRRLKTEFLVEFDGLPGN-----PD-GDRIVVLA 626 Query: 166 TVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALS 225 + D+ L + +++ D++ ++ R+ +K +D AL Sbjct: 627 ATNRPQELDEAALRRFTKRVYVS---LPDEQTRELLLNRL------LQKQGSPLDTEALR 677 Query: 226 RGMGIT 231 R IT Sbjct: 678 RLAKIT 683 >gi|195346897|ref|XP_002039991.1| GM15603 [Drosophila sechellia] gi|194135340|gb|EDW56856.1| GM15603 [Drosophila sechellia] Length = 739 Score = 39.4 bits (91), Expect = 0.42, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 22/43 (51%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109 V+LVGP G+GK+ LA + +++ F D +L+ Sbjct: 339 VLLVGPPGTGKTLLARAVAGEAKVPFFHAAGPEFDEVLVGQGA 381 >gi|161528596|ref|YP_001582422.1| ATPase central domain-containing protein [Nitrosopumilus maritimus SCM1] gi|160339897|gb|ABX12984.1| AAA ATPase central domain protein [Nitrosopumilus maritimus SCM1] Length = 397 Score = 39.4 bits (91), Expect = 0.42, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%) Query: 61 SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 WP ++L GP G+GK+ LA +++ + A S+ Sbjct: 147 GWPKG-MLLYGPPGTGKTMLAAATANEMDGYFINVDASSM 185 >gi|19074751|ref|NP_586257.1| 26S PROTEASOME REGULATORY SUBUNIT 6A (TAT-BINDING PROTEIN 1) [Encephalitozoon cuniculi GB-M1] gi|74697503|sp|Q8SR13|PRS6A_ENCCU RecName: Full=26S protease regulatory subunit 6A gi|19069393|emb|CAD25861.1| 26S PROTEASOME REGULATORY SUBUNIT 6A (TAT-BINDING PROTEIN 1) [Encephalitozoon cuniculi GB-M1] Length = 401 Score = 39.4 bits (91), Expect = 0.42, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V++ GP G+GK+ +A + K+ +T L + I ++ + Sbjct: 181 PPKGVLMYGPPGTGKTLMARACASKTNATFLKLAGPQLVQMYIGDGARLVRD 232 >gi|254252991|ref|ZP_04946309.1| hypothetical protein BDAG_02239 [Burkholderia dolosa AUO158] gi|124895600|gb|EAY69480.1| hypothetical protein BDAG_02239 [Burkholderia dolosa AUO158] Length = 436 Score = 39.4 bits (91), Expect = 0.42, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 57/170 (33%), Gaps = 22/170 (12%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G GK+ L+ + + + A I + ++ + T L Sbjct: 50 MILWGPPGVGKTTLSRLTALAFDCEFIALSAVLGGVKDIRDAMEQAKDTLNRTGRH-TIL 108 Query: 127 F----HIINS--------IHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N + + A T S+ V L SR A V + Sbjct: 109 FVDEIHRFNKGQQDALLPFVESGLVTFIGATTENPSFEVNSA-LLSR---AQVYVLKSLT 164 Query: 175 DDFLEKVIVKM--FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNL 222 DD + +++ + A + D ++ + A + ++ ++ Sbjct: 165 DDEMRQLLKRAQDIALDGLAFDDNAVDTLIGYAD---GDARRFLNLLEQA 211 >gi|328768252|gb|EGF78299.1| hypothetical protein BATDEDRAFT_20446 [Batrachochytrium dendrobatidis JAM81] Length = 435 Score = 39.4 bits (91), Expect = 0.42, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 45/144 (31%), Gaps = 45/144 (31%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V+L GP G+GK+ A ++++ +T I L + ++ Sbjct: 210 PPKGVLLYGPPGTGKTLSARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTK 269 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147 +++D + + +IN + + + +LM Sbjct: 270 KACIIFFDEVDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 329 Query: 148 ------PVSW----GVCLPDLCSR 161 P LPDL R Sbjct: 330 DPALMRPGRLDRKVEFNLPDLEGR 353 >gi|317492908|ref|ZP_07951332.1| ATP-dependent Clp protease [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919030|gb|EFV40365.1| ATP-dependent Clp protease [Enterobacteriaceae bacterium 9_2_54FAA] Length = 423 Score = 39.4 bits (91), Expect = 0.42, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 48/132 (36%), Gaps = 30/132 (22%) Query: 2 NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIE------QAVRL 55 ++++E+ P +++N P P + DD ++ Sbjct: 46 DIIREEIKEVAPHRERNALPT----------PHEIRNHLDDYVIGQEQAKKVLAVAVYNH 95 Query: 56 IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107 + + ++L+GP+GSGK+ LA + RF ++ ++ T Sbjct: 96 YKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA------RFLDVPFTMADATTLT 149 Query: 108 RKPVLLEDIDLL 119 + ED++ + Sbjct: 150 EAGYVGEDVENI 161 >gi|262171856|ref|ZP_06039534.1| ATPase AAA family [Vibrio mimicus MB-451] gi|261892932|gb|EEY38918.1| ATPase AAA family [Vibrio mimicus MB-451] Length = 449 Score = 39.4 bits (91), Expect = 0.42, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 6/74 (8%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G+GK+ LA + ++ + + A + I E+ L T L Sbjct: 54 MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAREN--KLSGRRTIL 111 Query: 127 F----HIINSIHQY 136 F H N Q Sbjct: 112 FVDEVHRFNKSQQD 125 >gi|255261736|ref|ZP_05341078.1| helper protein [Thalassiobium sp. R2A62] gi|255104071|gb|EET46745.1| helper protein [Thalassiobium sp. R2A62] Length = 168 Score = 39.4 bits (91), Expect = 0.42, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 56/148 (37%), Gaps = 34/148 (22%) Query: 32 FPRCLGISRDDLLVHSAIEQAVR------LIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 FP ++ D E VR I++ + V+L+G G+GKS +A Sbjct: 26 FPSYKDLAGFDFASSDINEATVRQLHRGEFIENAEN-----VVLIGGPGTGKSHVATAIG 80 Query: 86 DKS-----------RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND----------- 123 ++ + N + ++ + +L IDL+ ++ Sbjct: 81 VQAIEHHRRKVRFYSTVELVNALEYEKALGKAGKIAEMLTKIDLVILDELGYLPFSRSGG 140 Query: 124 TQLFHIINSIHQYDSSLLMTARTFPVSW 151 LFH+++ +++ +S+++T W Sbjct: 141 ALLFHLLSKLYER-TSVVITTNLSFSEW 167 >gi|213420144|ref|ZP_03353210.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 89 Score = 39.4 bits (91), Expect = 0.42, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 30/62 (48%) Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 +++K + I + ++A +I +R+ ++ E ++++ A G IT E L+ Sbjct: 1 ILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALR 60 Query: 241 ET 242 + Sbjct: 61 DL 62 >gi|224011577|ref|XP_002295563.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|209583594|gb|ACI64280.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 428 Score = 39.4 bits (91), Expect = 0.42, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 24/60 (40%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123 RV+ + GP SGK+ LA +++ + + L L DID L + Sbjct: 121 GRVIEIYGPESSGKTTLALHALAEAQQSGGIAAFVDAEHALDPAYAAALGVDIDSLLVSQ 180 >gi|194288885|ref|YP_002004792.1| recombination factor protein rara [Cupriavidus taiwanensis LMG 19424] gi|193222720|emb|CAQ68723.1| recombination helicase ATPase [Cupriavidus taiwanensis LMG 19424] Length = 464 Score = 39.4 bits (91), Expect = 0.42, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 49/135 (36%), Gaps = 20/135 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS-------------NIAKSLDSILIDTRKPVLL 113 +IL GP G GK+ LA + +D + + + ++ R V + Sbjct: 54 MILWGPPGVGKTTLARLMADAFDAEFIALSAVLSGVKDIREAVERAEQFRAHGRRTLVFV 113 Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 +++ + + F + + A T S+ V L SR A V + Sbjct: 114 DEVHRFNKSQQDAFLPH---VESGLFTFIGATTENPSFEVNGA-LLSR---AAVYVLKSL 166 Query: 174 DDDFLEKVIVKMFAD 188 DD L ++ ++ + Sbjct: 167 DDAELTQLALRASEE 181 >gi|158291141|ref|XP_312634.4| AGAP002334-PA [Anopheles gambiae str. PEST] gi|157018233|gb|EAA07487.4| AGAP002334-PA [Anopheles gambiae str. PEST] Length = 573 Score = 39.4 bits (91), Expect = 0.42, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 29/50 (58%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P++ ++L GP G+GK+ LA + + +T FS A +L S + + ++ Sbjct: 330 PAKGLLLFGPPGNGKTLLARAVATECSATFFSISAATLTSKYVGDGEKLV 379 >gi|56698546|ref|YP_168922.1| type I secretion system ATPase [Ruegeria pomeroyi DSS-3] gi|56680283|gb|AAV96949.1| type I secretion system ATPase [Ruegeria pomeroyi DSS-3] Length = 577 Score = 39.4 bits (91), Expect = 0.42, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 35/103 (33%), Gaps = 11/103 (10%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + + ++GPSGSGKS LA + R + LD +D P +L Sbjct: 359 PGQAIGVIGPSGSGKSTLAR---ALTGVWRPAGGTVRLDGAALDQYDPDVLGQHIGYLPQ 415 Query: 123 DTQLFH---IINSIHQYDSS-----LLMTARTFPVSWGVCLPD 157 QLF N + + + LPD Sbjct: 416 RVQLFEGTIAENIARLSGKPDAKKVVEAATKAAVHDMILQLPD 458 >gi|58616546|ref|YP_195676.1| transposion helper protein, ATP-binding protein [Azoarcus sp. EbN1] gi|56316009|emb|CAI10652.1| transposion helper protein, ATP-binding protein [Aromatoleum aromaticum EbN1] Length = 255 Score = 39.4 bits (91), Expect = 0.42, Method: Composition-based stats. Identities = 27/146 (18%), Positives = 50/146 (34%), Gaps = 27/146 (18%) Query: 31 SFPRCLGISRDDLL----VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSC----LAN 82 + P +S D V A A+ DSW ++L GP G GK+ L + Sbjct: 57 ALPPDKRLSAFDFAAVPTVSKAHVTALAEGDSWLE-QGANILLFGPPGVGKTHLIAGLGH 115 Query: 83 IWSDKSRSTRFS--------------NIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ--- 125 ++ F+ ++ + +D ++ +D + + + Sbjct: 116 ALVERGYRVLFTRTSDLVQRLQAARRDLRLPAELARLDRFDLLICDDFSYVRRDQGETSV 175 Query: 126 LFHIINSIHQYDSSLLMTARTFPVSW 151 LF +I + SL +TA W Sbjct: 176 LFELI-AERYERKSLAITANQPFSGW 200 >gi|71748282|ref|XP_823196.1| proteasome regulatory ATPase subunit 6 [Trypanosoma brucei TREU927] gi|70832864|gb|EAN78368.1| proteasome regulatory ATPase subunit 6 [Trypanosoma brucei] gi|261333101|emb|CBH16096.1| 19S proteasome regulatory subunit [Trypanosoma brucei gambiense DAL972] Length = 408 Score = 39.4 bits (91), Expect = 0.42, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 20/48 (41%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 V+L GP G+GK+ LA + + T L I ++ E Sbjct: 187 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGAELVQKYIGEGARLVRE 234 >gi|323333485|gb|EGA74879.1| Msp1p [Saccharomyces cerevisiae AWRI796] Length = 361 Score = 39.4 bits (91), Expect = 0.42, Method: Composition-based stats. Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 PS V+ L GP G GK+ LA + +S + S Sbjct: 126 PSGVL-LYGPPGCGKTMLAKALAKESGANFIS 156 >gi|254584580|ref|XP_002497858.1| ZYRO0F15136p [Zygosaccharomyces rouxii] gi|238940751|emb|CAR28925.1| ZYRO0F15136p [Zygosaccharomyces rouxii] Length = 566 Score = 39.4 bits (91), Expect = 0.42, Method: Composition-based stats. Identities = 35/214 (16%), Positives = 71/214 (33%), Gaps = 51/214 (23%) Query: 65 RVVILVGPSGSGKSCLANIW------------------SDKSRSTRFSNIAKSL--DSIL 104 ++L GP G GK+ LA + + K+ + +I D L Sbjct: 165 PSMVLWGPPGVGKTTLARLLTKTASVHGKFQYTMIETSATKANTQELRSIFDKSKNDFHL 224 Query: 105 IDTRKPVLLEDIDLLDFNDTQLF--HIINSIHQYDSSLLM--TARTFPVSWGVCLPDLCS 160 R + +++I + L H+ N +L+ T L S Sbjct: 225 TKRRTVLFIDEIHRFNKGQQDLLLPHVEN-----GDIVLIGATTENPSFQLNNA---LIS 276 Query: 161 RLKAATVVKISLPDDDFLEKVIVKMFA-----DRQ-------IFIDKKLAAYIVQRMERS 208 R V + + V+ + A R + + + + YIV + S Sbjct: 277 R---CHVFVLEQLSTNEACIVLSRGIALLNKCRRNVWGVDIPLKLPRSILEYIV---DLS 330 Query: 209 LVFAEKLVDKMDNLALSRGMGITRSLAAEVLKET 242 + + ++ ++ + +S I R L+ +K+ Sbjct: 331 VGDTRRALNLLEMVEISS-RSIDRELSKHDVKKM 363 >gi|225464694|ref|XP_002277491.1| PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] Length = 831 Score = 39.4 bits (91), Expect = 0.42, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 21/32 (65%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P R ++L GP G+GK+ LA ++++ ++ + Sbjct: 551 PCRGILLFGPPGTGKTMLAKAIANEAGASFIN 582 >gi|254424623|ref|ZP_05038341.1| hypothetical protein S7335_4783 [Synechococcus sp. PCC 7335] gi|196192112|gb|EDX87076.1| hypothetical protein S7335_4783 [Synechococcus sp. PCC 7335] Length = 1053 Score = 39.4 bits (91), Expect = 0.42, Method: Composition-based stats. Identities = 8/29 (27%), Positives = 19/29 (65%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRST 91 R+++L+G SG+GK+ L ++ +++ Sbjct: 62 SGRILLLLGESGAGKTHLMRVFRNQTHGR 90 >gi|163840727|ref|YP_001625132.1| recombination factor protein RarA [Renibacterium salmoninarum ATCC 33209] gi|162954203|gb|ABY23718.1| ATPase, AAA family [Renibacterium salmoninarum ATCC 33209] Length = 462 Score = 39.4 bits (91), Expect = 0.42, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 61/176 (34%), Gaps = 29/176 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G+GK+ LA++ + S I + + + D+ T Sbjct: 69 LILWGPPGTGKTTLAHVIARGPGRSFVELSAITAGVKDVRKVMDDALTASDLHGRT---T 125 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H + +L+ A T S+ V P L + ++ + Sbjct: 126 VLFLDEIHRFTKAQQDALLPGVENRWVVLVAATTENPSFSVVAPL----LSRSLLLTLQP 181 Query: 173 PDDDFLEKVIVKMFAD-RQ----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 D + +IV+ D R + + ++V+ A + + ++ A Sbjct: 182 LTDADIRALIVRAVIDPRGLDGSLELSDDALDHLVRLAS---GDARRALTTLEAAA 234 >gi|170586148|ref|XP_001897842.1| Probable 26S protease regulatory subunit S10B [Brugia malayi] gi|158594737|gb|EDP33319.1| Probable 26S protease regulatory subunit S10B, putative [Brugia malayi] Length = 467 Score = 39.4 bits (91), Expect = 0.42, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 26/75 (34%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + ++ ++ I ++ E Sbjct: 174 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIRE-------- 225 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 226 ------MFNYARDHQ 234 >gi|225462866|ref|XP_002270573.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 653 Score = 39.4 bits (91), Expect = 0.42, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 4/59 (6%) Query: 38 ISRDDLLVHSAIEQ--AVRLIDSWPSW--PSRVVILVGPSGSGKSCLANIWSDKSRSTR 92 ++ +DL V ++ + + L+ + P V+ ++GPSG GKS L + + + S Sbjct: 24 LTWEDLSVTASNGKGGSRLLLQGLTGFARPGEVLAIMGPSGCGKSTLLDALAGRLGSNI 82 >gi|150865091|ref|XP_001384164.2| replication factor ATPase [Scheffersomyces stipitis CBS 6054] gi|149386347|gb|ABN66135.2| replication factor ATPase [Scheffersomyces stipitis CBS 6054] Length = 786 Score = 39.4 bits (91), Expect = 0.42, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 29/64 (45%), Gaps = 3/64 (4%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 ++L GP G GK+ +A+I +++ S A ++ + D ++ E+ Sbjct: 59 PSMLLYGPPGVGKTTMASIIAEECGYVFVELSATAATVADLR-DLSTTIMAENRKRASRG 117 Query: 123 DTQL 126 + +L Sbjct: 118 EEEL 121 >gi|147863177|emb|CAN82969.1| hypothetical protein VITISV_013416 [Vitis vinifera] Length = 658 Score = 39.4 bits (91), Expect = 0.42, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 4/59 (6%) Query: 38 ISRDDLLVHSAIEQ--AVRLIDSWPSW--PSRVVILVGPSGSGKSCLANIWSDKSRSTR 92 ++ +DL V ++ + + L+ + P V+ ++GPSG GKS L + + + S Sbjct: 58 LTWEDLSVTASNGKGGSRLLLQGLTGFARPGEVLAIMGPSGCGKSTLLDALAGRLGSNI 116 >gi|6056413|gb|AAF02877.1|AC009525_11 Unknown protein [Arabidopsis thaliana] Length = 1217 Score = 39.4 bits (91), Expect = 0.42, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 58/165 (35%), Gaps = 47/165 (28%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS----------------ILID 106 P++ ++L GP G+GK+ LA + ++ + + S+ S Sbjct: 949 PTKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKI 1008 Query: 107 TRKPVLLEDIDLL------DFNDTQL------FHIIN----SIHQYDSSLLMTA------ 144 + ++++D + + F +IN + L++ A Sbjct: 1009 APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEF-MINWDGLRTKDKERVLVLAATNRPFD 1067 Query: 145 ------RTFPVSWGVCLPDL--CSRLKAATVVKISLPDDDFLEKV 181 R P V LPD S++ + + K + +D LE + Sbjct: 1068 LDEAVIRRLPRRLMVNLPDSANRSKILSVILAKEEMAEDVDLEAI 1112 >gi|121998434|ref|YP_001003221.1| recombinase A [Halorhodospira halophila SL1] gi|166220650|sp|A1WXK7|RECA_HALHL RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|121589839|gb|ABM62419.1| recA protein [Halorhodospira halophila SL1] Length = 354 Score = 39.4 bits (91), Expect = 0.42, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 5/68 (7%) Query: 64 SRVVILVGPSGSGKSCL-ANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL--- 119 RVV + GP SGK+ L +I ++ ++ + + ++ D + V ++ DLL Sbjct: 60 GRVVEIYGPESSGKTTLTLHIIAEAQKAGGAAAFVDAEHALDPDYAEAVGVDINDLLVSQ 119 Query: 120 -DFNDTQL 126 D + L Sbjct: 120 PDTGEQAL 127 >gi|71665751|ref|XP_819842.1| proteasome regulatory ATPase subunit [Trypanosoma cruzi strain CL Brener] gi|70885161|gb|EAN97991.1| proteasome regulatory ATPase subunit, putative [Trypanosoma cruzi] Length = 404 Score = 39.4 bits (91), Expect = 0.42, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 20/48 (41%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 V+L GP G+GK+ LA + + T L I ++ E Sbjct: 183 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGAELVQKYIGEGARLVRE 230 >gi|323304947|gb|EGA58704.1| Msp1p [Saccharomyces cerevisiae FostersB] Length = 361 Score = 39.4 bits (91), Expect = 0.43, Method: Composition-based stats. Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 PS V+ L GP G GK+ LA + +S + S Sbjct: 126 PSGVL-LYGPPGCGKTMLAKALAKESGANFIS 156 >gi|302348206|ref|YP_003815844.1| Cell division control protein 48, AAA family [Acidilobus saccharovorans 345-15] gi|302328618|gb|ADL18813.1| Cell division control protein 48, AAA family [Acidilobus saccharovorans 345-15] Length = 740 Score = 39.4 bits (91), Expect = 0.43, Method: Composition-based stats. Identities = 34/202 (16%), Positives = 73/202 (36%), Gaps = 51/202 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTR-- 108 P + V+L GP G+GK+ LA + +S + + + L I + + Sbjct: 223 PPKGVLLYGPPGTGKTLLAKAVATESDAYFVAINGPEIMSKFYGESEQRLREIFEEAKKN 282 Query: 109 --KPVLLEDIDLLD--FND----------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + ++ QL +++ + +++ A P + Sbjct: 283 APAIIFIDEIDAIAPKRDEVIGEVERRVVAQLLALMDGLEGRGQVIVIGATNRPNAIDPA 342 Query: 155 L--------------PDLCSRLK--AATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLA 198 L PD RL+ + L DD L K+ + + LA Sbjct: 343 LRRPGRFDREIEVPVPDKQGRLEILQIHTRHMPLADDVDL----EKLAEMTKGYTGADLA 398 Query: 199 AYIVQRMERSLVFAEKLVDKMD 220 A + + E ++ + + ++D Sbjct: 399 A-LAK--EAAMHALRRYLPEID 417 Score = 36.7 bits (84), Expect = 2.8, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 19/32 (59%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + V+L GP G+GK+ LA + +S + + Sbjct: 496 PPKGVLLFGPPGTGKTMLAKAVATESGANFIA 527 >gi|298706628|emb|CBJ29566.1| conserved unknown protein [Ectocarpus siliculosus] Length = 876 Score = 39.4 bits (91), Expect = 0.43, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 5/54 (9%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDID 117 R ++L GP+GSGKS LA + + SN +D + P+L +D Sbjct: 422 DRPILLYGPAGSGKSLLA-----REAARLISNSGDGVDPEPGASSTPLLELHLD 470 >gi|296454576|ref|YP_003661719.1| AAA ATPase [Bifidobacterium longum subsp. longum JDM301] gi|296184007|gb|ADH00889.1| AAA ATPase, central domain protein [Bifidobacterium longum subsp. longum JDM301] Length = 459 Score = 39.4 bits (91), Expect = 0.43, Method: Composition-based stats. Identities = 34/144 (23%), Positives = 55/144 (38%), Gaps = 28/144 (19%) Query: 67 VILVGPSGSGKSCLANIWSDKSRST-----RFSNIAKSLDSILIDTRKPVLLEDIDLLDF 121 VIL GP G GK+ LA I + +S ++ K + +L + ++ Sbjct: 63 VILFGPPGVGKTTLATIVAGQSGRVFEELSAVTSGVKDVRDVLTRAHERLV------SRG 116 Query: 122 NDTQLF--HIINSIHQYDSSLL----------MTARTFPVSWGVCLPDLCSRLKAATVVK 169 +T LF + +LL + A T S+ + P L SR + VVK Sbjct: 117 QETVLFIDEVHRFSKSQQDALLPAVENRDVTFIGATTENPSFSIIKP-LLSR---SVVVK 172 Query: 170 ISLPD-DDFLEKVIVKMFADRQIF 192 + + D E V + DR + Sbjct: 173 LESLEPDQLTELVQRALTDDRGLK 196 >gi|223986985|ref|ZP_03636942.1| hypothetical protein HOLDEFILI_04268 [Holdemania filiformis DSM 12042] gi|223961047|gb|EEF65602.1| hypothetical protein HOLDEFILI_04268 [Holdemania filiformis DSM 12042] Length = 273 Score = 39.4 bits (91), Expect = 0.43, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 26/112 (23%) Query: 67 VILVGPSGSGKSCLANIWS----DKSRSTRFSNIAKSLDSILID------------TRKP 110 ++L G G+GKS A + ++ + +N A L+ + + Sbjct: 118 LLLWGKVGTGKSYFAGCIANALMEREIAVCMTNFALILNDLAASFKDRNEYISRLCSFPL 177 Query: 111 VLLEDIDLLDFNDTQLFHIINSI---HQYDSSLLMTARTFPVSWGVCLPDLC 159 ++L+D + + L + N I ++ + L++T + L DL Sbjct: 178 LILDDFGMERGTEYGLEQVYNVIDSRYRSNKPLIVTT-------NLTLEDLQ 222 >gi|222624912|gb|EEE59044.1| hypothetical protein OsJ_10811 [Oryza sativa Japonica Group] Length = 1068 Score = 39.4 bits (91), Expect = 0.43, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 56/164 (34%), Gaps = 45/164 (27%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTR-- 108 P + ++L GP G+GK+ LA + ++ + F K + ++ Sbjct: 800 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSISSKWFGEGEKFVKAVFSLASKI 859 Query: 109 --KPVLLEDIDLL------DFNDTQLFHIIN---------SIHQYDSSLLMTA------- 144 + ++++D + + + N + L++ A Sbjct: 860 APSVIFVDEVDGMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 919 Query: 145 -----RTFPVSWGVCLPDLCSR--LKAATVVKISLPDDDFLEKV 181 R P V LPD +R + + + K L DD LE V Sbjct: 920 DEAVVRRLPRRLMVNLPDASNRRKILSVILAKEDLADDVDLEAV 963 >gi|237843861|ref|XP_002371228.1| ATP-dependent protease ATP-binding subunit, putative [Toxoplasma gondii ME49] gi|211968892|gb|EEB04088.1| ATP-dependent protease ATP-binding subunit, putative [Toxoplasma gondii ME49] gi|221483823|gb|EEE22135.1| ATP-dependent protease ATP-binding subunit, putative [Toxoplasma gondii GT1] Length = 565 Score = 39.4 bits (91), Expect = 0.43, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 20/99 (20%) Query: 23 NKEEQLFFSF---PRCLGISRDDLLVH---SAIEQAVRLIDSWPS------------WPS 64 EQ+ F P + + D +V + A+ L D W P+ Sbjct: 61 EPAEQID-DFTKDPDEIVAALDKYIVGQDTAKKSLAIALRDRWRRQQVKDEKLRREIAPN 119 Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI 103 ++L+GPSG GK+ LA + + + A + Sbjct: 120 N-LLLIGPSGCGKTELAKRLAAFAGAPFVKVAATRFTEV 157 >gi|159487319|ref|XP_001701670.1| AAA-ATPase of VPS4/SKD1 family [Chlamydomonas reinhardtii] gi|158280889|gb|EDP06645.1| AAA-ATPase of VPS4/SKD1 family [Chlamydomonas reinhardtii] Length = 436 Score = 39.4 bits (91), Expect = 0.43, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 28/50 (56%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P ++L GP G+GKS LA + ++ ST FS ++ L S + + ++ Sbjct: 161 PWSGILLYGPPGTGKSYLAKAVATEADSTFFSVSSQDLVSKWLGESEKLV 210 >gi|24461660|gb|AAN62229.1|AF440524_16 putative NTP-binding protein of insertion sequence [Pseudomonas aeruginosa] Length = 247 Score = 39.4 bits (91), Expect = 0.43, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 22/106 (20%) Query: 67 VILVGPSGSGKSCLA------NIWSDK----SRSTRFSNIAKSLDSILIDTRKPVLLEDI 116 +ILVG +G+GK+ LA I K + N + L+ I Sbjct: 100 LILVGGTGTGKTHLATALGVGAIHQGKRVRFYNAVDLVNHLEREKQQGKAGNLAKQLQHI 159 Query: 117 DLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSW 151 D + ++ LFH+I+ +++ +SL++T W Sbjct: 160 DAVILDELGYLPFPDSGGALLFHLISQLYE-KTSLIVTTNLSFGEW 204 >gi|82617273|emb|CAI64178.1| proteasome-activating nucleotidase (proteasome regulatroy subunit) [uncultured archaeon] Length = 440 Score = 39.4 bits (91), Expect = 0.43, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 27/57 (47%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 P + V+L GP G+GK+ LA + ++ +T + L I ++ + ++ Sbjct: 216 PPKGVLLFGPPGTGKTLLAKAVATRTEATFIRVVGSELVQKYIGEGARMVRDVFEMA 272 >gi|50549447|ref|XP_502194.1| YALI0C23749p [Yarrowia lipolytica] gi|49648061|emb|CAG82516.1| YALI0C23749p [Yarrowia lipolytica] Length = 383 Score = 39.4 bits (91), Expect = 0.43, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 18/32 (56%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + V+L GP G GK+ LA + +S + + Sbjct: 147 PPKGVLLYGPPGCGKTMLAKALAAESEANFIN 178 >gi|163846725|ref|YP_001634769.1| AAA ATPase [Chloroflexus aurantiacus J-10-fl] gi|222524536|ref|YP_002569007.1| AAA ATPase [Chloroflexus sp. Y-400-fl] gi|163668014|gb|ABY34380.1| AAA ATPase [Chloroflexus aurantiacus J-10-fl] gi|222448415|gb|ACM52681.1| AAA ATPase [Chloroflexus sp. Y-400-fl] Length = 350 Score = 39.4 bits (91), Expect = 0.43, Method: Composition-based stats. Identities = 15/98 (15%), Positives = 35/98 (35%), Gaps = 11/98 (11%) Query: 49 IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTR----FSNIAKSLDSIL 104 + A ++ R ++L GPSGSG+S L + + + + L + Sbjct: 24 LGAACEQLER-----RRPLLLYGPSGSGRSSLLTHLAQAAGAVLEIPNLNAFYLDLSLLP 78 Query: 105 IDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLM 142 L+ + L ++ + + + +L+ Sbjct: 79 DAATTYGLI--VRALGGSEPTIAALEQRLAASGRPVLI 114 >gi|328883303|emb|CCA56542.1| Cell division protein FtsH [Streptomyces venezuelae ATCC 10712] Length = 672 Score = 39.4 bits (91), Expect = 0.43, Method: Composition-based stats. Identities = 35/204 (17%), Positives = 66/204 (32%), Gaps = 49/204 (24%) Query: 67 VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110 V+L GP G+GK+ LA + ++ S + + + Sbjct: 207 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKANAPAI 266 Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 V +++ID + D + L + ++ +L+ A P L Sbjct: 267 VFVDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDVKGGVILIAATNRPDILDPAL 326 Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVKMFADRQIFIDKKL-- 197 PD+ RL+ V + P D L V + + L Sbjct: 327 LRPGRFDRQIAVDRPDMQGRLEILKVHQKGKPVAPDVDLGAVARRTPGFTGADLSNVLNE 386 Query: 198 AAYIVQRMERSLVFAEKLVDKMDN 221 AA + R ++ L+ + L + +D Sbjct: 387 AALLTARSDQKLIDNKALDEAIDR 410 >gi|328751836|gb|AEB39673.1| MIP17311p [Drosophila melanogaster] Length = 740 Score = 39.4 bits (91), Expect = 0.43, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 22/43 (51%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109 V+LVGP G+GK+ LA + +++ F D +L+ Sbjct: 340 VLLVGPPGTGKTLLARAVAGEAKVPFFHAAGPEFDEVLVGQGA 382 >gi|318607960|emb|CBY29458.1| Istb homolog, C-terminal fragment [Yersinia enterocolitica subsp. palearctica Y11] Length = 241 Score = 39.4 bits (91), Expect = 0.43, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 49/107 (45%), Gaps = 21/107 (19%) Query: 65 RVVILVGPSGSGKSCL---ANIWSDKSRS-TRFSNIAKSLDSILIDTRK----------- 109 R +I VG G+GK+ L I + + RF N+ ++ + +D Sbjct: 99 RNIIFVGAPGTGKTHLVTALGINAATNGFKVRFWNVLDLVNKLELDKESKQFKLTNQLTK 158 Query: 110 --PVLLEDIDLLDFND---TQLFHIINSIHQYDSSLLMTARTFPVSW 151 ++L+D+ L F+ LFH+I+ +H++ +S+++T W Sbjct: 159 LDLIVLDDLGYLPFSQKGGALLFHLISQLHEH-TSIMITTNLAFSEW 204 >gi|300727152|ref|ZP_07060571.1| ATPase, AAA family [Prevotella bryantii B14] gi|299775696|gb|EFI72287.1| ATPase, AAA family [Prevotella bryantii B14] Length = 423 Score = 39.4 bits (91), Expect = 0.43, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 66/178 (37%), Gaps = 38/178 (21%) Query: 65 RVVILVGPSGSGKSCLANIWSDK--SRSTRFSNIAKSLDSI-----------LIDTRKPV 111 IL GP G GK+ LA+I ++K + S + + + +T P+ Sbjct: 40 PSFILWGPPGVGKTTLAHIIANKLETPFYTLSAVTSGVKDVREVIDKAAKSQFFNTISPI 99 Query: 112 L-LEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 L +++I + L + + L+ A T S+ V P L SR + Sbjct: 100 LFIDEIHRFSKSQQDSLL----GAVERGTVTLIGATTENPSFEVIRP-LLSR---CQLYV 151 Query: 170 ISLPDDDFLEKVIVKMFAD------RQIFIDK--KLAAYIVQRMERSLVFAEKLVDKM 219 + + D L +I + + R I + + L Y S A KL++ + Sbjct: 152 LKSLNKDDLLDLIHRALTEDVELKKRNIILKEHGALLRY-------SGGDARKLLNIL 202 >gi|294636938|ref|ZP_06715264.1| replication-associated recombination protein A [Edwardsiella tarda ATCC 23685] gi|291089856|gb|EFE22417.1| replication-associated recombination protein A [Edwardsiella tarda ATCC 23685] Length = 447 Score = 39.4 bits (91), Expect = 0.43, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 65/198 (32%), Gaps = 36/198 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G+GK+ LA + + + R S + + I + D+ Sbjct: 53 MILWGPPGTGKTTLAELIARYGHAEVERISAVTSGIKEIREAIERARQNRDVGRRTI--- 109 Query: 125 QLF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKI 170 LF H N Q D ++ T L SR A V + Sbjct: 110 -LFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSA---LLSR---ARVYLL 162 Query: 171 SLPDDDFLEKVIVKMFAD--RQ-----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 + + +V+ + +D R + + ++ + + + A ++ M ++A Sbjct: 163 KALEAQDIVQVLQQAMSDSERGYGGQDLLLPEETRDALAELVNGDARRALNTLEMMADMA 222 Query: 224 ---LSRGMGITRSLAAEV 238 +T L V Sbjct: 223 EVDSQGQRRLTVDLLRAV 240 >gi|289616266|emb|CBI57062.1| unnamed protein product [Sordaria macrospora] Length = 1124 Score = 39.4 bits (91), Expect = 0.43, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 20/36 (55%) Query: 68 ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSI 103 +L GP G+GK+ LA + +S + A S++ + Sbjct: 833 LLYGPPGTGKTLLAKAVAKESGANMLEVSAASINDM 868 >gi|260433268|ref|ZP_05787239.1| putative Cell division protease FtsH family protein [Silicibacter lacuscaerulensis ITI-1157] gi|260417096|gb|EEX10355.1| putative Cell division protease FtsH family protein [Silicibacter lacuscaerulensis ITI-1157] Length = 610 Score = 39.4 bits (91), Expect = 0.43, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 26/60 (43%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++LVGP G+GK+ LA + ++ T FS + + + + D + + Sbjct: 192 ILLVGPPGTGKTLLARAVAGEAGVTFFSISGSEFVEMFVGVGAARVRDLFDQARKSAPAI 251 >gi|253741395|gb|EES98266.1| 26S proteasome ATPase subunit S4, putative [Giardia intestinalis ATCC 50581] Length = 447 Score = 39.4 bits (91), Expect = 0.43, Method: Composition-based stats. Identities = 13/28 (46%), Positives = 19/28 (67%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRS 90 P R IL GPSG+GKS LA ++++ + Sbjct: 226 PPRSCILHGPSGTGKSLLARACANETSA 253 >gi|226290033|gb|EEH45517.1| DNA-dependent ATPase MGS1 [Paracoccidioides brasiliensis Pb18] Length = 553 Score = 39.4 bits (91), Expect = 0.43, Method: Composition-based stats. Identities = 34/219 (15%), Positives = 78/219 (35%), Gaps = 38/219 (17%) Query: 44 LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSN-------- 95 LV + LI+ ++L G +G+GK+ +A + + S Sbjct: 154 LVGPS-GVLRGLIEQDR---VPSMVLWGGAGTGKTTIARVIAKMVGSRFVEINSTNSGVA 209 Query: 96 -----IAKSLDSILIDTRKPVLL-EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPV 149 A++ + + + +K +L ++I + +F ++ + +L+ T P Sbjct: 210 ECKKLFAEARNELSLSGKKTILFCDEIHRFSKSQQDVF--LSPVESGQITLIGTTTENPS 267 Query: 150 SWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ------IFIDKKLAAYIVQ 203 + V L SR +S D + ++ + +D +L Y+ Sbjct: 268 -FKVQNA-LLSR---CRTFTLSKLKDQDIIMILNRALEVEGPNYSPSSLVDDELIKYLAA 322 Query: 204 RMERSLVFAEKLVD-KMD---NLALSR---GMGITRSLA 235 + + L++ MD +++ +TR+L Sbjct: 323 FADGDARTSLNLLELAMDLSHREGMTKDELKKSLTRTLV 361 >gi|260836933|ref|XP_002613460.1| hypothetical protein BRAFLDRAFT_119863 [Branchiostoma floridae] gi|229298845|gb|EEN69469.1| hypothetical protein BRAFLDRAFT_119863 [Branchiostoma floridae] Length = 441 Score = 39.4 bits (91), Expect = 0.43, Method: Composition-based stats. Identities = 29/206 (14%), Positives = 68/206 (33%), Gaps = 45/206 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + VIL G G+GK+ LA ++++ +T + L + ++ Sbjct: 219 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEH 278 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTART---- 146 +++ID + + ++N + + D ++M Sbjct: 279 APSIVFIDEIDAVGTKRYESNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 338 Query: 147 FPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206 P D ++ LPD+ ++ + + D L +I+ + + Sbjct: 339 DPALIRPGRIDRK--------IEFPLPDEKTKRRIFQIHTSRMTLAEDVNLEDFIMAKDD 390 Query: 207 RSLVFAEKLVDKMDNLALSRGM-GIT 231 S + + + +AL +T Sbjct: 391 LSGADIKAICTEAGLMALRERRMKVT 416 >gi|195488933|ref|XP_002092523.1| GE11626 [Drosophila yakuba] gi|194178624|gb|EDW92235.1| GE11626 [Drosophila yakuba] Length = 735 Score = 39.4 bits (91), Expect = 0.43, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 22/43 (51%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109 V+LVGP G+GK+ LA + +++ F D +L+ Sbjct: 335 VLLVGPPGTGKTLLARAVAGEAKVPFFHAAGPEFDEVLVGQGA 377 >gi|115948410|ref|XP_794594.2| PREDICTED: hypothetical protein, partial [Strongylocentrotus purpuratus] Length = 409 Score = 39.4 bits (91), Expect = 0.43, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 43/144 (29%), Gaps = 45/144 (31%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109 P + V+L GP G+GK+ A ++++ + I L + Sbjct: 184 PPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARGK 243 Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147 + ++ID + + +IN + + + +LM Sbjct: 244 KACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 303 Query: 148 ------PVSW----GVCLPDLCSR 161 P LPDL R Sbjct: 304 DPALVRPGRLDRKVEFGLPDLEGR 327 >gi|94498812|ref|ZP_01305358.1| ATPase [Sphingomonas sp. SKA58] gi|94421741|gb|EAT06796.1| ATPase [Sphingomonas sp. SKA58] Length = 439 Score = 39.4 bits (91), Expect = 0.43, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 57/169 (33%), Gaps = 24/169 (14%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +I GP G+GK+ ++ + + RF I+ + + +D T L Sbjct: 59 IIFWGPPGTGKTTISRLLAHAVG-MRFEPISAVFSGVADLKKVFAAAKD-HARHGEKTLL 116 Query: 127 F----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLKAATVVKISL 172 F H N + + L+ T L SR A V+ + Sbjct: 117 FVDEIHRFNRAQQDSFLPFVENGTVTLVGATTENPSFELNAA---LLSR---AQVLILRR 170 Query: 173 PDDDFLEKVIVKM--FADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 D LE+++ + +R + +D ++ + F V+ + Sbjct: 171 LDAAALEQLLDRAEGLMERPLPLDPAAREALLASADGDGRFLLNQVETL 219 >gi|24658770|ref|NP_726263.1| CG3499 [Drosophila melanogaster] gi|15291271|gb|AAK92904.1| GH14313p [Drosophila melanogaster] gi|23240115|gb|AAM71132.2| CG3499 [Drosophila melanogaster] gi|220945266|gb|ACL85176.1| CG3499-PB [synthetic construct] gi|220954998|gb|ACL90042.1| CG3499-PB [synthetic construct] Length = 736 Score = 39.4 bits (91), Expect = 0.43, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 22/43 (51%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109 V+LVGP G+GK+ LA + +++ F D +L+ Sbjct: 336 VLLVGPPGTGKTLLARAVAGEAKVPFFHAAGPEFDEVLVGQGA 378 >gi|86137163|ref|ZP_01055741.1| type I secretion system ATPase [Roseobacter sp. MED193] gi|85826487|gb|EAQ46684.1| type I secretion system ATPase [Roseobacter sp. MED193] Length = 577 Score = 39.4 bits (91), Expect = 0.43, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLL 113 P + + ++GPSGSGKS LA + + R + LD +D P +L Sbjct: 359 PGQAIGVIGPSGSGKSTLAK---ALTGAWRPAAGTIRLDGAALDQYDPDVL 406 >gi|312142624|ref|YP_003994070.1| IstB domain protein ATP-binding protein [Halanaerobium sp. 'sapolanicus'] gi|311903275|gb|ADQ13716.1| IstB domain protein ATP-binding protein [Halanaerobium sp. 'sapolanicus'] Length = 251 Score = 39.4 bits (91), Expect = 0.44, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 52/120 (43%), Gaps = 24/120 (20%) Query: 61 SWPSR--VVILVGPSGSGKSCLAN-------------IWSDKSRSTRFSNIAKSLDSI-- 103 SW R ++L+GP+G GK+ L+ I++ S + A+ + S Sbjct: 96 SWLERGYNIVLLGPTGVGKTLLSIGLGIHAINEGYKVIFAAISDLIYWLKTAEMIRSSKT 155 Query: 104 ---LIDTRKPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 + ++++DI + + F +IN ++ +S+++T+ P WG + D Sbjct: 156 KLNRVLKCDLLIIDDIMFMAMEKQESNLFFQLINKLY-GQTSIIITSNKGPSDWGELIGD 214 >gi|308174475|ref|YP_003921180.1| Holliday junction DNA helicase, ATP-dependent component [Bacillus amyloliquefaciens DSM 7] gi|307607339|emb|CBI43710.1| Holliday junction DNA helicase, ATP-dependent component [Bacillus amyloliquefaciens DSM 7] gi|328554395|gb|AEB24887.1| Holliday junction DNA helicase RuvB [Bacillus amyloliquefaciens TA208] gi|328912800|gb|AEB64396.1| Holliday junction DNA helicase, ATP-dependent component [Bacillus amyloliquefaciens LL3] Length = 334 Score = 39.4 bits (91), Expect = 0.44, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 3/70 (4%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G GK+ LA+I +++ + +++ LE D+L ++ Sbjct: 56 VLLYGPPGLGKTTLASIVANEMGVEMRTTSGPAIERPGDLAAILTALEPGDVLFIDEI-- 113 Query: 127 FHIINSIHQY 136 H +N + Sbjct: 114 -HRLNRSIEE 122 >gi|307243867|ref|ZP_07525992.1| ATP-dependent metallopeptidase HflB [Peptostreptococcus stomatis DSM 17678] gi|306492689|gb|EFM64717.1| ATP-dependent metallopeptidase HflB [Peptostreptococcus stomatis DSM 17678] Length = 631 Score = 39.4 bits (91), Expect = 0.44, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 43/139 (30%), Gaps = 44/139 (31%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 +LVGP G+GK+ LA + ++ FS + + Sbjct: 201 ALLVGPPGTGKTLLAQAVAGEAGVPFFSISGSEFVEMFVGMGASRVRDLFKQAKEKAPCI 260 Query: 111 VLLEDIDLLDFNDTQLF-------HIINSIH------QYD-SSLLMTARTFPVSW----- 151 V +++ID + F +N + + +++ A P S Sbjct: 261 VFIDEIDAIGKKRDANFGGNDEREQTLNQLLSEMDGFEDGIGVVILAATNRPDSLDKALL 320 Query: 152 ---------GVCLPDLCSR 161 V LPDL R Sbjct: 321 RPGRFDRRVPVELPDLNGR 339 >gi|293360848|ref|XP_235670.5| PREDICTED: rCG50526-like [Rattus norvegicus] Length = 649 Score = 39.4 bits (91), Expect = 0.44, Method: Composition-based stats. Identities = 29/178 (16%), Positives = 56/178 (31%), Gaps = 43/178 (24%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTR-- 108 P R V+ GP G GK+ L + + +T A+ L + R Sbjct: 424 PPRTVLFFGPRGCGKALLGRCLATRLGATLLRLRGAGLATSGAVEGARLLQAAFAAARCR 483 Query: 109 --KPVLLEDIDLL--DFNDTQ-----LFHIINS---IHQYDSSLLMTARTFPVSWGVCLP 156 +L+ ++D L +D L ++ ++ T Sbjct: 484 PPAVLLISELDALLPARDDGASLRAPLLTCLDGGCGARADGVLVVGTTSRPAAL------ 537 Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 D +R + A ++LPD +++ + A + + ER L + Sbjct: 538 DEATRRRFALRFYVALPDGAARGQILQRALAQQGCVLS-----------ERELAALVQ 584 >gi|292670755|ref|ZP_06604181.1| primosome component [Selenomonas noxia ATCC 43541] gi|292647376|gb|EFF65348.1| primosome component [Selenomonas noxia ATCC 43541] Length = 199 Score = 39.4 bits (91), Expect = 0.44, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 47/132 (35%), Gaps = 21/132 (15%) Query: 40 RDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS 99 D + + AV + + + G G+GK+ LA I +++ + S Sbjct: 21 FADYDIMDGNKGAVAAAHLMIAGEIGGLFIHGVRGTGKTKLAAIIANERARAGHPVLFAS 80 Query: 100 LDSILIDTRKP------------------VLLEDIDLLDFND---TQLFHIINSIHQYDS 138 + ++ D R ++L+D+ ++ QLF I+N + Sbjct: 81 VPDLMADIRGSFKDGSTSETVQAVKETPFLVLDDLGSEKMSEWVGEQLFCIVNYRYNERL 140 Query: 139 SLLMTARTFPVS 150 ++T+ P Sbjct: 141 QTVVTSNYSPTQ 152 >gi|297741681|emb|CBI32813.3| unnamed protein product [Vitis vinifera] Length = 956 Score = 39.4 bits (91), Expect = 0.44, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 69/201 (34%), Gaps = 37/201 (18%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILIDTRKP 110 V+L GP G+GK+ LA + + FS + + DS Sbjct: 437 VLLHGPPGTGKTSLAQLCICDAGVNLFSVNGAEIVSQYYGESEQALHEIFDSASQAAPAV 496 Query: 111 VLLEDIDLLD-----FNDT-------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDL 158 V ++++D + + L ++++ I + D L++ A P S P L Sbjct: 497 VFIDELDAIAPARKDGGEELSHRIVATLLNLMDGISRTDGILVIAATNRPDSIE---PAL 553 Query: 159 C--SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216 RL +I +P +++ + ++ + + + + V A L Sbjct: 554 RRPGRLDREM--EIGVPSPGQRYDILLNLLSEMENSLSDMQIQQLAT-VTHGFVGA-DLA 609 Query: 217 DKMDNLALSRGMGITRSLAAE 237 + AL +S E Sbjct: 610 ALCNEAALVCLRRYVKSFIME 630 >gi|261199738|ref|XP_002626270.1| mitochondrial chaperone bcs1 [Ajellomyces dermatitidis SLH14081] gi|239594478|gb|EEQ77059.1| mitochondrial chaperone bcs1 [Ajellomyces dermatitidis SLH14081] Length = 387 Score = 39.4 bits (91), Expect = 0.44, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 23/92 (25%) Query: 63 PSRVVILV-GPSGSGKSCLANIWSDKSRSTRF----------SNIAKSLDSILIDTRKPV 111 P R L GP G+GK+ LA + K + + + L S L D + Sbjct: 245 PYRRGYLFNGPPGTGKTSLAQALAGKFGLDIYLLSLTGQNMTDDELQWLCSQLPDYPCVL 304 Query: 112 LLEDIDLLDFNDTQ------------LFHIIN 131 L+EDID + + H+ N Sbjct: 305 LIEDIDRRVDKEVEFTLASEKQIESIFLHLYN 336 >gi|225377814|ref|ZP_03755035.1| hypothetical protein ROSEINA2194_03465 [Roseburia inulinivorans DSM 16841] gi|225210325|gb|EEG92679.1| hypothetical protein ROSEINA2194_03465 [Roseburia inulinivorans DSM 16841] Length = 456 Score = 39.4 bits (91), Expect = 0.44, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 43/141 (30%), Gaps = 45/141 (31%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 +LVGP G+GK+ LA + ++ FS + + Sbjct: 242 ALLVGPPGTGKTLLAKAVAGEAGVPFFSLAGSDFVEMFVGVGASRVRDLFKEAQKQAPCI 301 Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + ND QL ++ L++ A P L Sbjct: 302 IFIDEIDAIGKSRDSRYGGGNDEREQTLNQLLAEMDGFDTSKGLLILAATNRPEVLDKAL 361 Query: 156 --------------PDLCSRL 162 PDL RL Sbjct: 362 LRPGRFDRRIIVDKPDLKGRL 382 >gi|207724502|ref|YP_002254899.1| isrso6-transposase orfb protein [Ralstonia solanacearum MolK2] gi|207727569|ref|YP_002255963.1| isrso6-transposase orfb protein [Ralstonia solanacearum MolK2] gi|206589723|emb|CAQ36684.1| isrso6-transposase orfb protein [Ralstonia solanacearum MolK2] gi|206590807|emb|CAQ56419.1| isrso6-transposase orfb protein [Ralstonia solanacearum MolK2] Length = 262 Score = 39.4 bits (91), Expect = 0.44, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 47/130 (36%), Gaps = 30/130 (23%) Query: 51 QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP 110 ++ I+ + V+L+GPSG GK+ +A+ + ++ + +++ Sbjct: 93 ASLAFIERAEN-----VVLLGPSGVGKTHIASALAYRATQAGIKTRFITAADLMMQLATA 147 Query: 111 -------------------VLLEDIDLLDF--NDTQLFHIINSI--HQYDSSLLMTARTF 147 +++++I L F + LF N + ++++T+ Sbjct: 148 RQQNRLREFFNRAVIGPRLLVIDEIGYLPFGREEADLF--FNVVAKRYERGAIVLTSNLP 205 Query: 148 PVSWGVCLPD 157 W D Sbjct: 206 FTQWATAFAD 215 >gi|171778879|ref|ZP_02919941.1| hypothetical protein STRINF_00800 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282525|gb|EDT47949.1| hypothetical protein STRINF_00800 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 422 Score = 39.4 bits (91), Expect = 0.44, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 61/176 (34%), Gaps = 25/176 (14%) Query: 67 VILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKS-------LDSILIDTRKPVLLEDID 117 +IL GP G GK+ +A+ + K F+ S + +LL++I Sbjct: 42 MILYGPPGIGKTSIASAIAGTTKYAFRTFNATTDSKKRLQEIAEEAKFSGGLVLLLDEIH 101 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 LD + + + +++ A T + V P + SR + ++ D Sbjct: 102 RLDKTKQDFLLP---LLENGNIIMIGATTENPFFSVT-PAIRSR---VQIFELEPLSTDD 154 Query: 178 LEKVIVKMFAD--RQ----IFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRG 227 +++ + +D R + ID +I + +D +S Sbjct: 155 IKQALQTALSDKERGFEFDVDIDADALDFIATATN---GDLRSAFNSLDLAVMSTK 207 >gi|169831648|ref|YP_001717630.1| AAA family ATPase [Candidatus Desulforudis audaxviator MP104C] gi|169638492|gb|ACA59998.1| AAA family ATPase, CDC48 subfamily [Candidatus Desulforudis audaxviator MP104C] Length = 753 Score = 39.4 bits (91), Expect = 0.44, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 48/138 (34%), Gaps = 42/138 (30%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILIDTRKP 110 V+L GP G+GK+ +A ++++ + F +N+ + + Sbjct: 237 VLLHGPPGTGKTLIARAVANETDAHFFHVNGPEIIHKFYGESEANLRGIFEEAGKNAPSI 296 Query: 111 VLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL--- 155 + L++ID + QL +++ + +++ A P S L Sbjct: 297 IFLDEIDAIAPKRESVVGEVEKRVVAQLLGLMDGLESRGQVIVIGATNIPNSLDPALRRP 356 Query: 156 -----------PDLCSRL 162 PD SRL Sbjct: 357 GRFDREITVNIPDKKSRL 374 >gi|163796890|ref|ZP_02190847.1| AAA ATPase, central region [alpha proteobacterium BAL199] gi|159177879|gb|EDP62428.1| AAA ATPase, central region [alpha proteobacterium BAL199] Length = 403 Score = 39.4 bits (91), Expect = 0.44, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 42/131 (32%), Gaps = 22/131 (16%) Query: 68 ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLF 127 IL GP G GK+ +A + ++ + A S + D +K T LF Sbjct: 21 ILWGPPGCGKTTIARLLAEHTDLEFVPLSAVF--SGVADLKKHFEAARGRRAGGRGTLLF 78 Query: 128 ----HIINSIHQYDSSLLM----------TARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 H N Q ++ T L SR V + Sbjct: 79 VDEVHRFNRAQQDGFLPVVEDGTITLVGATTENPSFELNAA---LLSR---CQVFVLRRL 132 Query: 174 DDDFLEKVIVK 184 DD L+K++ + Sbjct: 133 DDAALDKLLAR 143 >gi|156039377|ref|XP_001586796.1| hypothetical protein SS1G_11825 [Sclerotinia sclerotiorum 1980] gi|154697562|gb|EDN97300.1| hypothetical protein SS1G_11825 [Sclerotinia sclerotiorum 1980 UF-70] Length = 430 Score = 39.4 bits (91), Expect = 0.44, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 23/38 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P + ++L GP G+GKS LA + ++ ST FS + L Sbjct: 160 PWKGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 197 >gi|150865539|ref|XP_001384798.2| hypothetical protein PICST_60303 [Scheffersomyces stipitis CBS 6054] gi|149386795|gb|ABN66769.2| predicted protein [Scheffersomyces stipitis CBS 6054] Length = 433 Score = 39.4 bits (91), Expect = 0.44, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 23/38 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P+ ++L GP G+GKS LA + ++ ST FS + L Sbjct: 162 PTSGILLFGPPGTGKSYLAKAVATEANSTFFSVSSSDL 199 >gi|148559570|ref|YP_001259126.1| recombination factor protein RarA [Brucella ovis ATCC 25840] gi|163843471|ref|YP_001627875.1| recombination factor protein RarA [Brucella suis ATCC 23445] gi|225852702|ref|YP_002732935.1| recombination factor protein RarA [Brucella melitensis ATCC 23457] gi|254701946|ref|ZP_05163774.1| recombination factor protein RarA [Brucella suis bv. 5 str. 513] gi|254706613|ref|ZP_05168441.1| recombination factor protein RarA [Brucella pinnipedialis M163/99/10] gi|254710277|ref|ZP_05172088.1| recombination factor protein RarA [Brucella pinnipedialis B2/94] gi|256031771|ref|ZP_05445385.1| recombination factor protein RarA [Brucella pinnipedialis M292/94/1] gi|256061286|ref|ZP_05451436.1| recombination factor protein RarA [Brucella neotomae 5K33] gi|256113760|ref|ZP_05454564.1| recombination factor protein RarA [Brucella melitensis bv. 3 str. Ether] gi|256159941|ref|ZP_05457659.1| recombination factor protein RarA [Brucella ceti M490/95/1] gi|256255172|ref|ZP_05460708.1| recombination factor protein RarA [Brucella ceti B1/94] gi|256263807|ref|ZP_05466339.1| ATPase [Brucella melitensis bv. 2 str. 63/9] gi|256369630|ref|YP_003107140.1| ATPase, AAA family [Brucella microti CCM 4915] gi|260168905|ref|ZP_05755716.1| recombination factor protein RarA [Brucella sp. F5/99] gi|261222368|ref|ZP_05936649.1| recombination factor protein RarA [Brucella ceti B1/94] gi|261314073|ref|ZP_05953270.1| recombination factor protein RarA [Brucella pinnipedialis M163/99/10] gi|261317839|ref|ZP_05957036.1| recombination factor protein RarA [Brucella pinnipedialis B2/94] gi|261325293|ref|ZP_05964490.1| recombination factor protein RarA [Brucella neotomae 5K33] gi|261752514|ref|ZP_05996223.1| recombination factor protein RarA [Brucella suis bv. 5 str. 513] gi|261758397|ref|ZP_06002106.1| ATPase [Brucella sp. F5/99] gi|265988869|ref|ZP_06101426.1| recombination factor protein RarA [Brucella pinnipedialis M292/94/1] gi|265995120|ref|ZP_06107677.1| recombination factor protein RarA [Brucella melitensis bv. 3 str. Ether] gi|265998333|ref|ZP_06110890.1| recombination factor protein RarA [Brucella ceti M490/95/1] gi|148370827|gb|ABQ60806.1| ATPase, AAA family [Brucella ovis ATCC 25840] gi|163674194|gb|ABY38305.1| AAA ATPase central domain protein [Brucella suis ATCC 23445] gi|225641067|gb|ACO00981.1| AAA ATPase central domain protein [Brucella melitensis ATCC 23457] gi|255999792|gb|ACU48191.1| ATPase, AAA family [Brucella microti CCM 4915] gi|260920952|gb|EEX87605.1| recombination factor protein RarA [Brucella ceti B1/94] gi|261297062|gb|EEY00559.1| recombination factor protein RarA [Brucella pinnipedialis B2/94] gi|261301273|gb|EEY04770.1| recombination factor protein RarA [Brucella neotomae 5K33] gi|261303099|gb|EEY06596.1| recombination factor protein RarA [Brucella pinnipedialis M163/99/10] gi|261738381|gb|EEY26377.1| ATPase [Brucella sp. F5/99] gi|261742267|gb|EEY30193.1| recombination factor protein RarA [Brucella suis bv. 5 str. 513] gi|262552801|gb|EEZ08791.1| recombination factor protein RarA [Brucella ceti M490/95/1] gi|262766233|gb|EEZ12022.1| recombination factor protein RarA [Brucella melitensis bv. 3 str. Ether] gi|263093935|gb|EEZ17869.1| ATPase [Brucella melitensis bv. 2 str. 63/9] gi|264661066|gb|EEZ31327.1| recombination factor protein RarA [Brucella pinnipedialis M292/94/1] gi|326538935|gb|ADZ87150.1| AAA ATPase central domain protein [Brucella melitensis M5-90] Length = 437 Score = 39.4 bits (91), Expect = 0.44, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 59/181 (32%), Gaps = 28/181 (15%) Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDID 117 S ++ GP G+GK+ +A + + ++ + S I + + Sbjct: 49 ASGSLGSMVFWGPPGTGKTTVARLLAGETDLAFEQISAIFSGVADLKRVFEAA----RAR 104 Query: 118 LLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLK 163 + T LF H N + + +L+ T L SR Sbjct: 105 RMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVILIGATTENPSFELNAA---LLSR-- 159 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 A V+ D + + ++ + + +D + A +++ + A L +++ Sbjct: 160 -ARVLTFHPHDSESIATLLKRAEEQEGQALPLDDEARASLIRMADGDGRAALTLAEEVWR 218 Query: 222 L 222 Sbjct: 219 A 219 >gi|124024855|ref|YP_001013971.1| fused recombination factor protein RarA/unknown domain-containing protein [Prochlorococcus marinus str. NATL1A] gi|123959923|gb|ABM74706.1| Hypothetical protein NATL1_01421 [Prochlorococcus marinus str. NATL1A] Length = 734 Score = 39.4 bits (91), Expect = 0.44, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 54/146 (36%), Gaps = 19/146 (13%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G GK+ LA I + + S A + + ++ ++ T L Sbjct: 57 LLLYGPPGVGKTTLARIIALNTLSHFSVVNAALAGIKDLRSEIESAIDRLNKFGKR-TIL 115 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDL-CSRLKAATVVKISLP 173 F H N+ + + L+ A T + V L SRL +++ Sbjct: 116 FIDEVHRFNTAQQDALLPWVENGTLTLIGATTENPYFEVNKALLSRSRL-----FRLNSL 170 Query: 174 DDDFLEKVIVKMFADRQIFIDKKLAA 199 + L +++ + D++ KL Sbjct: 171 NSKALHQLLQRALNDKKRGYGLKLIN 196 >gi|16120141|ref|NP_395729.1| cell division cycle protein [Halobacterium sp. NRC-1] gi|169237400|ref|YP_001690604.1| AAA-type ATPase (transitional ATPase homolog) [Halobacterium salinarum R1] gi|10584255|gb|AAG20864.1| cell division cycle protein [Halobacterium sp. NRC-1] gi|167728627|emb|CAP15469.1| AAA-type ATPase (transitional ATPase homolog) [Halobacterium salinarum R1] Length = 737 Score = 39.4 bits (91), Expect = 0.44, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 63/175 (36%), Gaps = 36/175 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106 P++ V+L GP G+GK+ LA ++++ S S + + + Sbjct: 499 PAKGVLLYGPPGTGKTLLAKAVANEANSNFISIKGPELFNKYVGESERGVREVFSKAREN 558 Query: 107 TRKPVLLEDIDLLDFND--------------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 V ++ID + +QL ++ + + + +++ P Sbjct: 559 APTVVFFDEIDAIASERGQGVGDSNVGERVVSQLLTELDGLEELEDIVVIATTNRPDLID 618 Query: 153 VCLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRME 206 L L RL V + PD+ ++ D+ + D + +V+R + Sbjct: 619 DAL--LRPGRLD--RHVAVDEPDEAARREIFEIHTEDKPLAEDVDV-DELVERTD 668 >gi|45357587|ref|NP_987144.1| ATPase [Methanococcus maripaludis S2] gi|45047147|emb|CAF29580.1| putative AAA superfamily ATPase, similar to FtsH [Methanococcus maripaludis S2] Length = 371 Score = 39.4 bits (91), Expect = 0.44, Method: Composition-based stats. Identities = 25/170 (14%), Positives = 60/170 (35%), Gaps = 34/170 (20%) Query: 61 SWPSRVVILVGPSGSGKSCLANIWSDKSR------------STRFSNIAKSLDSILIDTR 108 W + ++ GP G+GK+ LA + ++ + +K ++S+ + Sbjct: 153 EWAPKNILFYGPPGTGKTMLARALATETDVPLYLIKATELIGDHVGDGSKQIESLYENAS 212 Query: 109 K----PVLLEDIDLLDFNDT-------------QLFHIINSIHQYDSSLLMTARTFPVSW 151 + + ++++D + + L ++ I + + A P Sbjct: 213 ENTPSIIFIDELDAIALSRQFQSLRGDVSEVVNALLTELDGIKNNLGVVTIAATNNPEML 272 Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYI 201 + SR + K+ PDD+ K++ I ++ L Y+ Sbjct: 273 DNAI---RSRFEEEIEFKM--PDDNERLKILELYAEKMPIAVNADLKKYV 317 >gi|333027616|ref|ZP_08455680.1| hypothetical protein STTU_5120 [Streptomyces sp. Tu6071] gi|332747468|gb|EGJ77909.1| hypothetical protein STTU_5120 [Streptomyces sp. Tu6071] Length = 222 Score = 39.4 bits (91), Expect = 0.44, Method: Composition-based stats. Identities = 27/180 (15%), Positives = 55/180 (30%), Gaps = 31/180 (17%) Query: 13 PDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSA---IEQAVRLIDSWPSWPSRVVIL 69 PD + + + + D +V +A A + + ++L Sbjct: 32 PDLARRYEARIPPRYRGAALGHPAVRVWADQVVAAAERPNPGARAAVTT-----GPSLLL 86 Query: 70 VGPSGSGKSC-------------LANIWSDKSRSTRFSNIAKSLDSIL---------IDT 107 GP+G GK+ LA W + + ++ + S + Sbjct: 87 AGPTGVGKTHEAYGAVRALADAGLAVRWEATTAADLYAELRPQPGSDPERVLARVSRVPL 146 Query: 108 RKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPD-LCSRLKAAT 166 L ++ + + +IN + ++ L+T L D + SRL T Sbjct: 147 LLLDDLGAARSSEWVEEITYRLINRRYNHELPTLITTNLPIRDLRATLGDRIASRLAEMT 206 >gi|327532765|ref|NP_001127417.1| 26S protease regulatory subunit 8 [Pongo abelii] Length = 398 Score = 39.4 bits (91), Expect = 0.44, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 21/48 (43%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 V+L GP G+GK+ LA + + T L LI ++ E Sbjct: 178 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKLIGEGARMVRE 225 >gi|298493199|ref|YP_003723376.1| ATP-dependent metalloprotease FtsH ['Nostoc azollae' 0708] gi|298235117|gb|ADI66253.1| ATP-dependent metalloprotease FtsH ['Nostoc azollae' 0708] Length = 631 Score = 39.4 bits (91), Expect = 0.44, Method: Composition-based stats. Identities = 33/204 (16%), Positives = 68/204 (33%), Gaps = 45/204 (22%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ FS + + Sbjct: 211 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDNAPCI 270 Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + ND QL ++ +++ A P L Sbjct: 271 IFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEGNTGIIIIAATNRPDVLDSAL 330 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 L+ V + PD +++ ++++ L I +R A Sbjct: 331 ------LRPGRFDRQVTVDAPDIKGRLEILEVHSRNKKLDPSVSL-DAIARRTP-GFTGA 382 Query: 213 EKLVDKMDNLAL--SRGMGITRSL 234 L + ++ A+ +R T ++ Sbjct: 383 -DLANLLNEAAILTARRRKDTITI 405 >gi|261403117|ref|YP_003247341.1| AAA ATPase central domain protein [Methanocaldococcus vulcanius M7] gi|261370110|gb|ACX72859.1| AAA ATPase central domain protein [Methanocaldococcus vulcanius M7] Length = 401 Score = 39.4 bits (91), Expect = 0.44, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 26/50 (52%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P + V+L GP G+GK+ LA+ + +T F+ A S+ S ++ Sbjct: 153 PWKGVLLFGPPGTGKTLLASACAGSLDATFFNVKASSVTSKYFGESSKII 202 >gi|239948017|ref|ZP_04699770.1| ISAfe9, transposition helper protein [Rickettsia endosymbiont of Ixodes scapularis] gi|239948145|ref|ZP_04699898.1| ISAfe9, transposition helper protein [Rickettsia endosymbiont of Ixodes scapularis] gi|239948206|ref|ZP_04699959.1| ISAfe9, transposition helper protein [Rickettsia endosymbiont of Ixodes scapularis] gi|239922293|gb|EER22317.1| ISAfe9, transposition helper protein [Rickettsia endosymbiont of Ixodes scapularis] gi|239922421|gb|EER22445.1| ISAfe9, transposition helper protein [Rickettsia endosymbiont of Ixodes scapularis] gi|239922482|gb|EER22506.1| ISAfe9, transposition helper protein [Rickettsia endosymbiont of Ixodes scapularis] Length = 200 Score = 39.4 bits (91), Expect = 0.44, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 22/112 (19%) Query: 67 VILVGPSGSGKSC----LANIWSDKSRSTRFSNIAKSLDSILIDTRKP------------ 110 +++ G G+GKS LA W R ++ A + +L Sbjct: 44 ILIFGNPGTGKSHLSIGLAREWCLAGRRVLYTTAANLVQQLLEAKLSLKLKQIIKKFDYF 103 Query: 111 --VLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWGVCLPD 157 ++++DI + +N + LF ++ ++ SS+L+T+ W D Sbjct: 104 EILIIDDISYVPYNREETDVLFTLLPERYEM-SSVLITSNLVFAKWNTIFKD 154 >gi|225426100|ref|XP_002276971.1| PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] Length = 829 Score = 39.4 bits (91), Expect = 0.44, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 21/32 (65%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P R ++L GP G+GK+ LA ++++ ++ + Sbjct: 551 PCRGILLFGPPGTGKTMLAKAIANEAGASFIN 582 >gi|255935967|ref|XP_002559010.1| Pc13g05760 [Penicillium chrysogenum Wisconsin 54-1255] gi|211583630|emb|CAP91645.1| Pc13g05760 [Penicillium chrysogenum Wisconsin 54-1255] Length = 389 Score = 39.4 bits (91), Expect = 0.44, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 19/48 (39%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 V+L GP G+GK+ LA + + L I ++ E Sbjct: 169 VLLYGPPGTGKTLLARAAAHHTDCRFIRVSGSELVQKYIGEGSRMVRE 216 >gi|194761254|ref|XP_001962844.1| GF14225 [Drosophila ananassae] gi|190616541|gb|EDV32065.1| GF14225 [Drosophila ananassae] Length = 356 Score = 39.4 bits (91), Expect = 0.44, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 32/76 (42%), Gaps = 11/76 (14%) Query: 143 TARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 T+R P SR +++S P + + ++ + + +LA +V Sbjct: 168 TSRIIPAI--------RSR---CLGIRVSAPSEPEIVSILQNTCKREGLTLPPELAKRLV 216 Query: 203 QRMERSLVFAEKLVDK 218 ++ ER+L A +++ Sbjct: 217 EKSERNLRRALLMLEA 232 >gi|159029215|emb|CAO87575.1| ftsH [Microcystis aeruginosa PCC 7806] Length = 654 Score = 39.4 bits (91), Expect = 0.44, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 25/48 (52%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 V+LVGP G+GK+ LA + ++ T FS A + + T + + Sbjct: 240 VLLVGPPGTGKTLLAKAVAGEAGVTFFSISASEFVELFVGTGAARVRD 287 >gi|297619932|ref|YP_003708037.1| AAA ATPase central domain-containing protein [Methanococcus voltae A3] gi|297378909|gb|ADI37064.1| AAA ATPase central domain protein [Methanococcus voltae A3] Length = 373 Score = 39.4 bits (91), Expect = 0.44, Method: Composition-based stats. Identities = 21/151 (13%), Positives = 54/151 (35%), Gaps = 34/151 (22%) Query: 61 SWPSRVVILVGPSGSGKSCLANIWSDKSR------------STRFSNIAKSLDSILIDTR 108 W + ++ G G+GK+ LA + ++ + +K + + D Sbjct: 152 EWSPKNILFYGSPGTGKTMLARALASQTNSNLKLIKATELIGEHVGDSSKVIKGLYADAA 211 Query: 109 K----PVLLEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSW 151 + +++ID + + L ++ IH+ + + + A P Sbjct: 212 ANKPCIIFIDEIDAIALSRNYQSLRGDVSEVVNALLTELDGIHENEGVITIAATNNPDML 271 Query: 152 GVCLPDLCSRLKAATVVKISLPDDDFLEKVI 182 + + SR + + KI P++ +++ Sbjct: 272 DLAV---RSRFEEEILFKI--PNEKERLEIL 297 >gi|156545181|ref|XP_001603491.1| PREDICTED: similar to conserved hypothetical protein [Nasonia vitripennis] Length = 913 Score = 39.4 bits (91), Expect = 0.44, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 R+ +L GP G GK+ LA++ + + + S D R+ +L Sbjct: 327 QRIALLTGPPGLGKTTLAHV-AARHAGYNIVELNASDDRGPEAFREALL 374 >gi|147797283|emb|CAN73743.1| hypothetical protein VITISV_026769 [Vitis vinifera] Length = 825 Score = 39.4 bits (91), Expect = 0.44, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 21/32 (65%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P R ++L GP G+GK+ LA ++++ ++ + Sbjct: 545 PCRGILLFGPPGTGKTMLAKAIANEAGASFIN 576 >gi|145355574|ref|XP_001422034.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144582273|gb|ABP00328.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 691 Score = 39.4 bits (91), Expect = 0.44, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 29/64 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P R V+L GP G GK+ LA+ + +++ FS A + S + + + E + Sbjct: 95 PPRGVLLHGPPGCGKTTLAHAIAQEAKVPFFSIAATEIVSGMSGESEAKIRELFQSAAAH 154 Query: 123 DTQL 126 L Sbjct: 155 APSL 158 >gi|322815168|gb|EFZ23885.1| proteasome regulatory ATPase subunit, putative [Trypanosoma cruzi] Length = 404 Score = 39.4 bits (91), Expect = 0.44, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 20/48 (41%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 V+L GP G+GK+ LA + + T L I ++ E Sbjct: 183 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGAELVQKYIGEGARLVRE 230 >gi|302797863|ref|XP_002980692.1| hypothetical protein SELMODRAFT_420183 [Selaginella moellendorffii] gi|300151698|gb|EFJ18343.1| hypothetical protein SELMODRAFT_420183 [Selaginella moellendorffii] Length = 1045 Score = 39.4 bits (91), Expect = 0.44, Method: Composition-based stats. Identities = 11/31 (35%), Positives = 18/31 (58%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF 93 P + V+L GP G+GK+ L + +S + F Sbjct: 832 PCKGVLLYGPPGTGKTYLTKAVAAQSSANLF 862 >gi|300120926|emb|CBK21168.2| unnamed protein product [Blastocystis hominis] Length = 458 Score = 39.4 bits (91), Expect = 0.44, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ A ++++ +T + L + ++ E Sbjct: 205 PPKGVLLYGPPGTGKTLSARAVANRTEATFIRVLGSELVQKYVGEGARIVRE 256 >gi|258511998|ref|YP_003185432.1| AAA ATPase central domain-containing protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478724|gb|ACV59043.1| AAA ATPase central domain protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 447 Score = 39.4 bits (91), Expect = 0.44, Method: Composition-based stats. Identities = 38/244 (15%), Positives = 83/244 (34%), Gaps = 45/244 (18%) Query: 8 YSFFVPDKQKNDQP---KNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS 64 +S + + + P + + L + RD +L R+I+ Sbjct: 4 FSLASEHEAEREAPLAYRMRPRSLDEMVGHENLVGRDGIL--------RRMIERDR---L 52 Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD---- 120 +IL GP G+GK+ +A + + ++++ A + + E+ DL Sbjct: 53 MSIILYGPPGTGKTTIAEVIARQTKARFIPLNAVTSGIADVRKAVETAREERDLYARRTV 112 Query: 121 --FNDTQLFHIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKI 170 ++ H N + L+ A T + V L SR + V ++ Sbjct: 113 VFLDEI---HRFNKSQQDALLPHVEAGLLSLVGATTENPYFDVNAA-LLSR---SHVFRL 165 Query: 171 SLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 D + +++ AD R + + A ++ R A + ++ ++ A Sbjct: 166 EPLSPDDIGRLVDMAIADEERGLGRMRVRLHPD-ARRVLTLQAR--GDARRALNLLELAA 222 Query: 224 LSRG 227 + Sbjct: 223 FAAR 226 >gi|255538752|ref|XP_002510441.1| 26S protease regulatory subunit S10b, putative [Ricinus communis] gi|223551142|gb|EEF52628.1| 26S protease regulatory subunit S10b, putative [Ricinus communis] Length = 399 Score = 39.4 bits (91), Expect = 0.44, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + + ++ ++ I ++ E Sbjct: 172 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIRE 223 >gi|134102887|ref|YP_001108548.1| transposase [Saccharopolyspora erythraea NRRL 2338] gi|133915510|emb|CAM05623.1| transposase [Saccharopolyspora erythraea NRRL 2338] Length = 244 Score = 39.4 bits (91), Expect = 0.44, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 47/152 (30%), Gaps = 47/152 (30%) Query: 30 FSFPRCLGISRD--------DLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCL- 80 F F + RD D + V+ +GP G+GK+ L Sbjct: 62 FDFDHQRSLKRDTITHLGTLDFIAGKEN-----------------VVFLGPPGTGKTHLS 104 Query: 81 --ANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------VLLEDIDLLDFND 123 I + ++ A + L + ++++++ + F Sbjct: 105 IGLGIRACQAGHRVSFATAAGWVARLAEASHAGRLQQELVKLGRIPLLIIDEVGYIPFEA 164 Query: 124 TQ---LFHIINSIHQYDSSLLMTARTFPVSWG 152 F ++ S +SL++T+ WG Sbjct: 165 EAANLFFQLV-SARYERASLIVTSNKPFGRWG 195 >gi|6692099|gb|AAF24564.1|AC007764_6 F22C12.12 [Arabidopsis thaliana] Length = 825 Score = 39.4 bits (91), Expect = 0.44, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 20/32 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P R ++L GP G+GK+ LA + ++ ++ + Sbjct: 527 PCRGILLFGPPGTGKTMLAKAIAKEAGASFIN 558 >gi|71033181|ref|XP_766232.1| 26S proteasome regulatory subunit 7 [Theileria parva strain Muguga] gi|68353189|gb|EAN33949.1| 26S proteasome regulatory subunit 7, putative [Theileria parva] Length = 425 Score = 39.4 bits (91), Expect = 0.44, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 46/144 (31%), Gaps = 45/144 (31%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P V+L GP G+GK+ A ++++ + I L + ++ Sbjct: 200 PPNGVLLYGPPGTGKTLTARAVANRTDACFICVIGSELVQKYVGEGARLVRELFQMARSK 259 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQYDSS----LLMTARTF--- 147 ++++D + + + I+N + +D+ +LM Sbjct: 260 KACILFIDEVDAIGGSRGEDASNGDHEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 319 Query: 148 ------P----VSWGVCLPDLCSR 161 P LPDL R Sbjct: 320 DSALLRPGRIDRRIEFGLPDLEGR 343 >gi|332884949|gb|EGK05204.1| hypothetical protein HMPREF9456_03117 [Dysgonomonas mossii DSM 22836] Length = 422 Score = 39.4 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 36/179 (20%), Positives = 64/179 (35%), Gaps = 38/179 (21%) Query: 65 RVVILVGPSGSGKSCLANIWSD--KSRSTRFSNIAKSLDSI-----------LIDTRKPV 111 +L GP G GK+ LA I ++ + S I + + +T+ P+ Sbjct: 40 PSFLLWGPPGVGKTTLAQIIANTLDTPFYTLSAINSGVKDVREVIELAKKNQFFNTKSPI 99 Query: 112 L-LEDIDLLDFNDT-QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVK 169 L +++I + L + L+ A T S+ V P L SR V Sbjct: 100 LFIDEIHRFSKSQQDSLL----GAVETGVITLIGATTENPSFEVIRP-LLSR---CQVYV 151 Query: 170 ISLPDDDFLEKVIVKM------FADRQIFI--DKKLAAYIVQRMERSLVFAEKLVDKMD 220 + + LE++ + DR I + + + S A KL++ +D Sbjct: 152 LQSLGKEDLEELAHRALTQDIILKDRDIELKETDAILRF-------SGGDARKLLNILD 203 >gi|328684931|gb|AEB33878.1| transposase [Mycobacterium sp. JS330] Length = 266 Score = 39.4 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 48/152 (31%), Gaps = 47/152 (30%) Query: 30 FSFPRCLGISRD--------DLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLA 81 F F G+ RD D + V+ +GP G+GK+ LA Sbjct: 85 FDFDHARGLKRDLIAHLGTLDFVTAKDN-----------------VVFLGPPGTGKTHLA 127 Query: 82 ---NIWSDKSRSTRFSNIA---------------KSLDSILIDTRKPVLLEDIDLLDFND 123 I + ++ A + + ++++++ + F Sbjct: 128 IGIAIRACQAGHRVLFATASQWVDRLAGAHHGGTLQAELARLARYPLLVIDEVGYIPFEP 187 Query: 124 TQ---LFHIINSIHQYDSSLLMTARTFPVSWG 152 F ++ S +SL++T+ WG Sbjct: 188 EAANLFFQLV-SSRYERASLIVTSNKPFGRWG 218 >gi|291398411|ref|XP_002715511.1| PREDICTED: protease (prosome, macropain) 26S subunit, ATPase 5-like, partial [Oryctolagus cuniculus] Length = 334 Score = 39.4 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 22/51 (43%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 S+ V+L GP G+GK+ LA + + T L I ++ E Sbjct: 111 SKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRE 161 >gi|260202801|ref|ZP_05770292.1| membrane-bound ell division protein ftsH [Mycobacterium tuberculosis K85] gi|289572264|ref|ZP_06452491.1| membrane-bound ell division protein ftsH [Mycobacterium tuberculosis K85] gi|289536695|gb|EFD41273.1| membrane-bound ell division protein ftsH [Mycobacterium tuberculosis K85] Length = 760 Score = 39.4 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 41/268 (15%), Positives = 82/268 (30%), Gaps = 62/268 (23%) Query: 22 KNKEEQLFFSFPRCL---GISRD----------DLLVHSAIEQAVRLIDSWPSWPSRVVI 68 K++ +QL P+ D D L + + QA+ P V+ Sbjct: 147 KSRAKQLSKDMPKTTFADVAGVDEAVEELYEIKDFLQNPSRYQALG-----AKIPKGVL- 200 Query: 69 LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP----------------VL 112 L GP G+GK+ LA + ++ F+ + + + Sbjct: 201 LYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFEQAKQNSPCIIF 260 Query: 113 LEDIDLLDFN------------DTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCLPD 157 +++ID + + L + ++ +L+ A P L Sbjct: 261 VDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGDRAGVILIAATNRPDILDPAL-- 318 Query: 158 LCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 L+ + +S PD V+ + + D L + +R + A Sbjct: 319 ----LRPGRFDRQIPVSNPDLAGRRAVLRAHSKGKPMAADADL-DGLAKRTV-GMTGA-D 371 Query: 215 LVDKMDNLALSRGMGITRSLAAEVLKET 242 L + ++ AL + L+E Sbjct: 372 LANVINEAALLTARENGTVITGPALEEA 399 >gi|213409774|ref|XP_002175657.1| AAA family ATPase [Schizosaccharomyces japonicus yFS275] gi|212003704|gb|EEB09364.1| AAA family ATPase [Schizosaccharomyces japonicus yFS275] Length = 629 Score = 39.4 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 30/50 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P + ++L GP G+GK+ LA + ++++T FS A SL S + + ++ Sbjct: 381 PVQGMLLFGPPGTGKTMLAKAVATEAKATFFSISASSLTSKYLGESEKLV 430 >gi|224062085|ref|XP_002300747.1| predicted protein [Populus trichocarpa] gi|118483383|gb|ABK93592.1| unknown [Populus trichocarpa] gi|222842473|gb|EEE80020.1| predicted protein [Populus trichocarpa] Length = 402 Score = 39.4 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + + ++ ++ I ++ E Sbjct: 175 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIRE 226 >gi|126730808|ref|ZP_01746617.1| hypothetical protein SSE37_13383 [Sagittula stellata E-37] gi|126708524|gb|EBA07581.1| hypothetical protein SSE37_13383 [Sagittula stellata E-37] Length = 208 Score = 39.4 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%) Query: 52 AVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKS-RSTRFSNIAKSLDSILIDTRKP 110 A R+ ++ R+V L G GSGKS LA++ + ++ + LD L+ Sbjct: 11 AERIAETPARGRRRLVALAGAPGSGKSTLAHVVAARTPNAAVMPMDGFHLDDRLLRPAGL 70 Query: 111 V 111 + Sbjct: 71 L 71 >gi|119962942|ref|YP_948025.1| recombination factor protein RarA [Arthrobacter aurescens TC1] gi|119949801|gb|ABM08712.1| putative ATPase, AAA family [Arthrobacter aurescens TC1] Length = 497 Score = 39.4 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 65/176 (36%), Gaps = 29/176 (16%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 VIL GP G+GK+ LA++ + S I + + + + D+ T Sbjct: 80 VILWGPPGTGKTTLAHVIARGPGRKFVELSAITAGVKDVRRVMDEALTARDLYKKT---T 136 Query: 125 QLF----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 LF H N + +L+ A T S+ V P L + ++ + Sbjct: 137 VLFLDEIHRFNKAQQDALLPGVENRWVVLVAATTENPSFSVVSPL----LSRSLLLTLKP 192 Query: 173 PDDDFLEKVIVKMFAD-RQIF----IDKKLAAYIVQRMERSLVFAEKLVDKMDNLA 223 DD + ++ + D R + + + ++V+ S A + + ++ A Sbjct: 193 LTDDDISGLLQRAVVDARGLAGRVELSPEALDHLVR---LSGGDARRALTALEAAA 245 >gi|55729400|emb|CAH91432.1| hypothetical protein [Pongo abelii] Length = 398 Score = 39.4 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 21/48 (43%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 V+L GP G+GK+ LA + + T L LI ++ E Sbjct: 178 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKLIGEGARMVRE 225 >gi|9294440|dbj|BAB02560.1| unnamed protein product [Arabidopsis thaliana] Length = 270 Score = 39.4 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 22/40 (55%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS 102 P + ++L GP G+GK+ LA + ++ + S +L S Sbjct: 15 PCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS 54 >gi|297818698|ref|XP_002877232.1| ATPDR10/PDR10 [Arabidopsis lyrata subsp. lyrata] gi|297323070|gb|EFH53491.1| ATPDR10/PDR10 [Arabidopsis lyrata subsp. lyrata] Length = 1387 Score = 39.4 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 4/64 (6%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDS----ILIDTRKPVLLEDIDL 118 P R+ +L+GP GSGKS L S K+ + S + + + R ++ D+ Sbjct: 171 PGRLTLLLGPPGSGKSTLLKALSGKTEAGLKSTGKVTYNGHELHEFVPERTAGYIDQYDV 230 Query: 119 LDFN 122 + Sbjct: 231 HLPD 234 >gi|290976655|ref|XP_002671055.1| predicted protein [Naegleria gruberi] gi|284084620|gb|EFC38311.1| predicted protein [Naegleria gruberi] Length = 883 Score = 39.4 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P+ V+ L GP G GK+ LA S+ S + S Sbjct: 586 PAGVL-LYGPPGCGKTLLAKAISNDSGANFIS 616 Score = 39.0 bits (90), Expect = 0.56, Method: Composition-based stats. Identities = 24/141 (17%), Positives = 43/141 (30%), Gaps = 36/141 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDK--------SRSTRFSNIAKS--------LDSILID 106 P R ++L GP G GK+ LAN + + S S ++ + + Sbjct: 258 PPRGILLHGPPGCGKTMLANAIAGELQIPFLKVSAPEIVSGMSGESEAKIRQIFRDAISN 317 Query: 107 TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAAT 166 + +++ID + N+ + + ++ CL DL Sbjct: 318 APSIIFIDEIDAILSKRD------NASKEMEKRIV-------AQLITCLDDLTLEKTGGK 364 Query: 167 VVKI-------SLPDDDFLEK 180 V I DD Sbjct: 365 TVIIIGATNRPDSLDDALRRA 385 >gi|300780995|ref|ZP_07090849.1| recombination protein A [Corynebacterium genitalium ATCC 33030] gi|300532702|gb|EFK53763.1| recombination protein A [Corynebacterium genitalium ATCC 33030] Length = 396 Score = 39.4 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 32/72 (44%), Gaps = 3/72 (4%) Query: 45 VHSAIEQAVRLIDSWPSWPSRVVI-LVGPSGSGKSCLA-NIWSDKSRSTRFSNIAKSLDS 102 + S AV + WP ++ + GP SGK+ +A + ++ R+ + + + Sbjct: 71 ISSGN-TAVDVALGIGGWPRGRIVEIYGPESSGKTTVALHAIAEAQRAGGIAAFIDAEHA 129 Query: 103 ILIDTRKPVLLE 114 + + K + ++ Sbjct: 130 LDPEYAKKLGVD 141 >gi|289578211|ref|YP_003476838.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter italicus Ab9] gi|297544492|ref|YP_003676794.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289527924|gb|ADD02276.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter italicus Ab9] gi|296842267|gb|ADH60783.1| Holliday junction DNA helicase RuvB [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 338 Score = 39.4 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 68/201 (33%), Gaps = 43/201 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P V+L GP G GK+ LA + S++ +++ L++ D+L + Sbjct: 51 PLDHVLLYGPPGLGKTTLATVISNEMGVGIKITSGPAIERSGDLAAILTNLQENDILFID 110 Query: 123 DTQLFHIINSIHQYDSSLLMTARTFPVSWGVCL-------PDLCS-RLKAATVVKISLPD 174 + H +N + +L P L P S RL I Sbjct: 111 EI---HRLNRSVEE---ILY-----PAMEDFELDIVIGKGPSARSIRLSLPRFTLIGA-- 157 Query: 175 DDFLEKVIVKMFADRQIFIDKKLAAYIVQRME-RSLVFAEKLVDK--------MDNLA-- 223 ++ DR I R++ S+ ++++ + +D A Sbjct: 158 -TTRAALMTSPLRDRFGVI---------NRLDYYSVDELKEIIKRSANILNIGIDEDAAL 207 Query: 224 -LSRGMGITRSLAAEVLKETQ 243 +++ T +A +LK + Sbjct: 208 EIAKRSRGTPRIANRLLKRVR 228 >gi|300708081|ref|XP_002996228.1| hypothetical protein NCER_100711 [Nosema ceranae BRL01] gi|239605510|gb|EEQ82557.1| hypothetical protein NCER_100711 [Nosema ceranae BRL01] Length = 397 Score = 39.4 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 57/166 (34%), Gaps = 39/166 (23%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL-------------- 112 V+L GP G+GK+ LA + +A +L I ++ Sbjct: 178 VLLYGPPGTGKTLLARATAATMDCNFLKVVASALIEKYIGESSRMIREMFAYAREKAPCV 237 Query: 113 --LEDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSWGVCL 155 L++ID + L ++N + D+ ++ A P L Sbjct: 238 IFLDEIDAIGGKRSSESSSSDREVQRTLMELLNQLDGFKELDNVKVIMATNRPDILDPAL 297 Query: 156 PDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 L RL ++I LP+++ +++ D + I + Y Sbjct: 298 --LRPGRLD--RKIEIPLPNEEGRREILKIHSKD--MEISGE-IDY 336 >gi|258566938|ref|XP_002584213.1| cell division cycle protein 48 [Uncinocarpus reesii 1704] gi|237905659|gb|EEP80060.1| cell division cycle protein 48 [Uncinocarpus reesii 1704] Length = 806 Score = 39.4 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 65/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 245 PPRGILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 304 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + + ++M A P S Sbjct: 305 SPAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNS---V 361 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + V I +PD +++ + + + + + Sbjct: 362 DPALR-RFGRFDREVDIGIPDPTGRLEILQ--IHTKNMKLGEDV 402 >gi|269118811|ref|YP_003306988.1| Holliday junction DNA helicase RuvB [Sebaldella termitidis ATCC 33386] gi|268612689|gb|ACZ07057.1| Holliday junction DNA helicase RuvB [Sebaldella termitidis ATCC 33386] Length = 339 Score = 39.4 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 3/70 (4%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 ++L GP G GK+ LA + +++ L+ LE+ D+L ++ Sbjct: 57 ILLYGPPGLGKTTLAGVIANEMGVNLKITTGPVLEKAGDLAAILTSLEENDILFIDEI-- 114 Query: 127 FHIINSIHQY 136 H +N+ + Sbjct: 115 -HRLNTSVEE 123 >gi|268317651|ref|YP_003291370.1| AAA ATPase central domain-containing protein [Rhodothermus marinus DSM 4252] gi|262335185|gb|ACY48982.1| AAA ATPase central domain protein [Rhodothermus marinus DSM 4252] Length = 584 Score = 39.4 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 34/180 (18%), Positives = 65/180 (36%), Gaps = 43/180 (23%) Query: 68 ILVGPSGSGKSCLANIWSDKSR--------------STRFSNIAKSLDSILIDTRKPVLL 113 ++ GP G+GK+ L ++ + N+ K L+ + T V++ Sbjct: 330 LVTGPVGTGKTFLITCFAGEIGIPMVRFKNFRSQWQGVTEGNLEKILNLLEAMTPVAVMI 389 Query: 114 EDIDLLDFNDTQ---------LFHIINSIHQYDSS------LLMTARTFPVSWGVCLPDL 158 ++ D + +F I S + L+TAR P V DL Sbjct: 390 DEADAALGHREAEGDSGVSKRVFAQIASFMSNPAHRGRILFFLLTAR--PDLMPV---DL 444 Query: 159 CSRLKAATVVKISLPD-----DDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAE 213 + +A + + PD D+ L+ ++ + I + +++ ERS AE Sbjct: 445 KRQGRAEEHIALFYPDTREERDELLQVMLRR----TGIELSLDEVPDVLRNGERSFSGAE 500 >gi|224008308|ref|XP_002293113.1| 26S proteasome ATPase regulatory subunit [Thalassiosira pseudonana CCMP1335] gi|220971239|gb|EED89574.1| 26S proteasome ATPase regulatory subunit [Thalassiosira pseudonana CCMP1335] Length = 413 Score = 39.4 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 30/188 (15%), Positives = 63/188 (33%), Gaps = 48/188 (25%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL-------------- 112 V+L GP G+GK+ LA + +T +A ++ I ++ Sbjct: 194 VLLYGPPGTGKTLLARALASNISATFLKVVASAIVDKYIGESARIIREMFGFARDHQPCV 253 Query: 113 --LEDIDLLDFN------------DTQLFHIINSIH--QYDSSL-LMTARTFPVSWGVCL 155 +++ID + + L ++N + + + ++ A P L Sbjct: 254 IFMDEIDAIGGSRFSEGTSADREIQRTLMELLNQMDGFEDQGQVKMVMATNRPDILDPAL 313 Query: 156 PDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 L RL ++I P++ +++ A I +R + K Sbjct: 314 --LRPGRLD--RKIEIPEPNETQRLEILKIHSAS------------ITKRGDIDFESVVK 357 Query: 215 LVDKMDNL 222 L D ++ Sbjct: 358 LADGLNGA 365 >gi|294657430|ref|XP_459738.2| DEHA2E09922p [Debaryomyces hansenii CBS767] gi|199432686|emb|CAG87974.2| DEHA2E09922p [Debaryomyces hansenii] Length = 429 Score = 39.4 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 24/38 (63%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P+ ++L GP G+GKS LA + +++ST FS + L Sbjct: 158 PTSGILLYGPPGTGKSYLAKAVATEAKSTFFSVSSSDL 195 >gi|149639275|ref|XP_001507929.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus] Length = 476 Score = 39.4 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 30/215 (13%), Positives = 61/215 (28%), Gaps = 66/215 (30%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109 P + V+L GP G+GK+ A ++++ + I L + Sbjct: 251 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 310 Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147 + ++ID + + +IN + + + +LM Sbjct: 311 KACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 370 Query: 148 ------PVSW----GVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P LPDL R + KI R + +++ + Sbjct: 371 DPALMRPGRLDRKIEFSLPDLEGR---THIFKIHA----------------RSMSVERDI 411 Query: 198 AAYIVQR-MERSLVF-AEKLVDKMDNLALSRGMGI 230 ++ R S + + A+ I Sbjct: 412 RFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKI 446 >gi|145341796|ref|XP_001415989.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144576212|gb|ABO94281.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 247 Score = 39.4 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 26/159 (16%), Positives = 55/159 (34%), Gaps = 35/159 (22%) Query: 68 ILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP----------------V 111 +LVGP G+GK+ LA + +S F A + + + Sbjct: 41 LLVGPPGTGKTLLARAVAGESGVAFFPVAASEFVELFVGRGAARVRELFAEARKARPAII 100 Query: 112 LLEDIDLL------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC 159 ++++D + N+ QL ++ + L++ A P + L L Sbjct: 101 FIDELDAVGSRRGAGLNEERDQTLNQLLVEMDGFAKDSGILILAATNRPDALDPAL--LR 158 Query: 160 -SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 RL V + P +++ R + +++ + Sbjct: 159 PGRL--TRRVFVGPPTQQGRAQILSVHL--RGLDLEEDV 193 >gi|81361350|gb|ABB71513.1| chromosomal replication initiator protein [Wolbachia pipientis] gi|81361352|gb|ABB71514.1| chromosomal replication initiator protein [Wolbachia pipientis] gi|81361354|gb|ABB71515.1| chromosomal replication initiator protein [Wolbachia pipientis] Length = 134 Score = 39.4 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 34/78 (43%), Gaps = 1/78 (1%) Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 L V I+ + ++ +++ K + ++ + ++ ++ E ++K+ + Sbjct: 1 LGWGLVADINETTFELRLGILQAKVERMNMYVPKDVLEFLARNIKSNIRELEGALNKVAH 60 Query: 222 LALSRGMGITRSLAAEVL 239 +L G +T A+E L Sbjct: 61 TSLI-GRSMTVESASETL 77 >gi|107102094|ref|ZP_01366012.1| hypothetical protein PaerPA_01003143 [Pseudomonas aeruginosa PACS2] Length = 425 Score = 39.4 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 56/177 (31%), Gaps = 18/177 (10%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 IL GP G GK+ L + + + S + A I ++D + T L Sbjct: 38 FILWGPPGVGKTTLGRLAASATDSRFIAISAVLAGVKDIRQAIDEAQAELDNHGRS-TVL 96 Query: 127 F----HIINSIH--------QYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPD 174 F H N + L+ T V L SR A V + Sbjct: 97 FVDEIHRFNKAQQDALLPHVESGLLTLVGGTTEHPGLAVNSA-LLSR---AQVYTLEPLS 152 Query: 175 DDFLEKVIVKMF-ADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGI 230 D L ++ + + + +D + + L++++ N A G + Sbjct: 153 SDELNQLYERALPHLQGVTLDADALDLLKGFADGDGRRFLNLLEQVTNAASGAGKTV 209 >gi|76801412|ref|YP_326420.1| proteasome-activating nucleotidase [Natronomonas pharaonis DSM 2160] gi|76557277|emb|CAI48853.1| proteasome-activating nucleotidase 2 [Natronomonas pharaonis DSM 2160] Length = 404 Score = 39.4 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 1/61 (1%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P V+L GP G+GK+ LA ++++ +T L I L+ D+ L Sbjct: 181 PPSGVLLHGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFI-GEGAKLVRDLFELARQ 239 Query: 123 D 123 + Sbjct: 240 E 240 >gi|159903447|ref|YP_001550791.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9211] gi|159888623|gb|ABX08837.1| cell division protein FtsH4 [Prochlorococcus marinus str. MIT 9211] Length = 577 Score = 39.4 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 50/156 (32%), Gaps = 46/156 (29%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 +L+GP G+GK+ LA + ++ FS A + + Sbjct: 159 FLLIGPPGTGKTLLARAIAGEANVPFFSISASEFVELFVGVGASRVRQLFKKALEKSPSI 218 Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW---- 151 + +++ID + ND QL I+ + +++ A P Sbjct: 219 IFIDEIDAIGRKRGSGIGGGNDEREQTLNQLLTEIDGFAENSGVIVIAATNRPDVLDNAL 278 Query: 152 ----------GVCLPDLCSRLK-AATVVKISLPDDD 176 + LPD RL+ + + +D Sbjct: 279 IRPGRFDRKIEIGLPDRKGRLEILSVHARTKPLSED 314 >gi|40882206|emb|CAF06032.1| probable 26S proteasome regulatory particle chain RPT5 [Neurospora crassa] Length = 462 Score = 39.4 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 20/45 (44%) Query: 70 VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 GP G+GK+ LA + ++ +T L + I ++ + Sbjct: 249 YGPPGTGKTLLARACAAQTDATFLKLAGPQLVQMFIGDGAKLVRD 293 >gi|329848734|ref|ZP_08263762.1| metalloprotease [Asticcacaulis biprosthecum C19] gi|328843797|gb|EGF93366.1| metalloprotease [Asticcacaulis biprosthecum C19] Length = 627 Score = 39.4 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 31/203 (15%), Positives = 64/203 (31%), Gaps = 44/203 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 +LVGP G+GK+ LA + ++ FS + + Sbjct: 195 ALLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDMFDQAKKNAPCI 254 Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + D + L + ++ + +++ A P L Sbjct: 255 IFIDEIDAVGRHRGAGHGGGNDEREQTLNQLLVEMDGFEAQEGIIIIAATNRPDVLDTAL 314 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 L+ V + PD E ++ + +D + ++ R A Sbjct: 315 ------LRPGRFDRQVTVPNPDLSGREAILRVHMKPVPLAVDVDVK--VIARGTPGFSGA 366 Query: 213 EKLVDKMDNLALSRGMGITRSLA 235 L + ++ AL R L Sbjct: 367 -DLANLVNEAALMAARK-DRKLV 387 >gi|326563109|gb|EGE13382.1| recombination factor protein RarA [Moraxella catarrhalis 12P80B1] Length = 412 Score = 39.4 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 62/174 (35%), Gaps = 21/174 (12%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIA---------KSLDSILIDTRKPVLL 113 +IL G +G GK+ LA + +D S ++ D L V + Sbjct: 39 PSLILHGSAGIGKTTLAMLLADAVGRPFRPLSAVSSGVKELREVLRSDDGLFHEPPVVFV 98 Query: 114 EDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 ++I + L + L+ A T S+ V L SR V K+ Sbjct: 99 DEIHRFNKAQQDALL----QAVETGEITLIGATTENPSFSVNNA-LLSR---CQVYKLEP 150 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVFAEKLVDKMDNLALS 225 DD + +IV+ + K + + ++ S + ++ ++ +A + Sbjct: 151 LSDDEIYALIVRAIRQDTLLKTKDIQINNLAALIDLSQGDGRRALNLLELVAAA 204 >gi|326560683|gb|EGE11051.1| recombination factor protein RarA [Moraxella catarrhalis 46P47B1] Length = 412 Score = 39.4 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 62/174 (35%), Gaps = 21/174 (12%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIA---------KSLDSILIDTRKPVLL 113 +IL G +G GK+ LA + +D S ++ D L V + Sbjct: 39 PSLILHGSAGIGKTTLAMLLADAVGRPFRPLSAVSSGVKELREVLRSDDGLFHEPPVVFV 98 Query: 114 EDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 ++I + L + L+ A T S+ V L SR V K+ Sbjct: 99 DEIHRFNKAQQDALL----QAVETGEITLIGATTENPSFSVNNA-LLSR---CQVYKLEP 150 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVFAEKLVDKMDNLALS 225 DD + +IV+ + K + + ++ S + ++ ++ +A + Sbjct: 151 LSDDEIYALIVRAIRQDTLLKTKDIQINNLAALIDLSQGDGRRALNLLELVAAA 204 >gi|296109169|ref|YP_003616118.1| AAA ATPase central domain protein [Methanocaldococcus infernus ME] gi|295433983|gb|ADG13154.1| AAA ATPase central domain protein [Methanocaldococcus infernus ME] Length = 397 Score = 39.4 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 23/38 (60%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P + ++L GP G+GK+ LA+ + +T F+ A S+ Sbjct: 149 PWKGILLFGPPGTGKTLLASACAGSLDATFFNVKASSV 186 >gi|225405623|ref|ZP_03760812.1| hypothetical protein CLOSTASPAR_04844 [Clostridium asparagiforme DSM 15981] gi|225042855|gb|EEG53101.1| hypothetical protein CLOSTASPAR_04844 [Clostridium asparagiforme DSM 15981] Length = 613 Score = 39.4 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 44/140 (31%), Gaps = 45/140 (32%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 +LVGP G+GK+ LA + ++ FS + + Sbjct: 210 ALLVGPPGTGKTLLARAVAGEAHVPFFSISGSEFVEMFVGMGAAKVRDLFKQATEKAPCI 269 Query: 111 VLLEDIDLLD---------FNDT------QLFHIINSIHQYDSSLLMTARTFPVSW---- 151 V +++ID + ND QL ++ +++ A P S Sbjct: 270 VFIDEIDTIGKKRDGGGISGNDEREQTLNQLLTEMDGFDGKKGVVILAATNRPESLDAAL 329 Query: 152 ----------GVCLPDLCSR 161 V LPDL R Sbjct: 330 LRPGRFDRRIPVELPDLKGR 349 >gi|224075026|ref|XP_002304524.1| predicted protein [Populus trichocarpa] gi|222841956|gb|EEE79503.1| predicted protein [Populus trichocarpa] Length = 378 Score = 39.4 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 20/32 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P R ++L GP G+GK+ LA + ++ ++ + Sbjct: 99 PCRGILLFGPPGTGKTMLAKAIAKEAGASFIN 130 >gi|218192811|gb|EEC75238.1| hypothetical protein OsI_11534 [Oryza sativa Indica Group] Length = 778 Score = 39.4 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 56/164 (34%), Gaps = 45/164 (27%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTR-- 108 P + ++L GP G+GK+ LA + ++ + F K + ++ Sbjct: 510 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSISSKWFGEGEKFVKAVFSLASKI 569 Query: 109 --KPVLLEDIDLL------DFNDTQLFHIIN---------SIHQYDSSLLMTA------- 144 + ++++D + + + N + L++ A Sbjct: 570 APSVIFVDEVDGMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 629 Query: 145 -----RTFPVSWGVCLPDLCSR--LKAATVVKISLPDDDFLEKV 181 R P V LPD +R + + + K L DD LE V Sbjct: 630 DEAVVRRLPRRLMVNLPDASNRRKILSVILAKEDLADDVDLEAV 673 >gi|189091796|ref|XP_001929731.1| hypothetical protein [Podospora anserina S mat+] gi|188219251|emb|CAP49231.1| unnamed protein product [Podospora anserina S mat+] Length = 830 Score = 39.4 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 31/50 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S+ST FS A SL S + + ++ Sbjct: 582 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTSKYLGESEKLV 631 >gi|118594713|ref|ZP_01552060.1| recombination protein [Methylophilales bacterium HTCC2181] gi|118440491|gb|EAV47118.1| recombination protein [Methylophilales bacterium HTCC2181] Length = 433 Score = 39.4 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 38/174 (21%), Positives = 67/174 (38%), Gaps = 30/174 (17%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 +IL GP G GK+ +A++ S+ + S A I +E + + Sbjct: 44 PSMILWGPPGVGKTSIAHVISNCIDAEFLSISAVLSGVKEIRE----AIEKAQFMKEHQQ 99 Query: 125 Q---LF----HIINSIHQYDSSL------LMT---ARTFPVSWGVCLPDLCSRLKAATVV 168 + LF H N Q D+ L L+T A T S+ V L SR V Sbjct: 100 RNTILFVDEVHRFNKSQQ-DAFLPHIESGLITFIGATTENPSFEVNSA-LLSR---CQVY 154 Query: 169 KISLPDDDFLEKVI---VKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM 219 + ++ LE ++ +K++ +R I++ +V + LV+ + Sbjct: 155 VLKALNEKELESILDKALKLYPER--SINEGARNLVVTYADGDARKLINLVEML 206 >gi|19263883|gb|AAH25134.1| Psmc6 protein [Mus musculus] Length = 293 Score = 39.4 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + ++ S+ I ++ E Sbjct: 70 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 121 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 122 ------MFNYARDHQ 130 >gi|78212852|ref|YP_381631.1| ATP-dependent metalloprotease FtsH [Synechococcus sp. CC9605] gi|78197311|gb|ABB35076.1| ATP-dependent metalloprotease FtsH [Synechococcus sp. CC9605] Length = 598 Score = 39.4 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 42/213 (19%), Positives = 68/213 (31%), Gaps = 59/213 (27%) Query: 18 NDQPKNKEEQ-LFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPS------RVVILV 70 QP+ K +Q L F GI+ L +E+ V + ++ R V+LV Sbjct: 136 RSQPRLKPQQDLQLRFEDVAGINDARL----ELEEVVTFLKQPEAFIRLGAKIPRGVLLV 191 Query: 71 GPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP----------------VLLE 114 GP G+GK+ LA + ++ FS A + + V ++ Sbjct: 192 GPPGTGKTLLAKAIAGEAGVPFFSIAASEFVELFVGVGASRVRDLFRQAKEKSPCIVFID 251 Query: 115 DIDLLDF----------NDTQ--------------------LFHIINSIHQYDSSLLMTA 144 +ID + ++ + L N D++LL Sbjct: 252 EIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEENSGVILLAATNRADVLDAALLRPG 311 Query: 145 RTFPVSWGVCLPDLCSRLK-AATVVKISLPDDD 176 R V LPD R A + DD Sbjct: 312 RFD-RRIDVGLPDRRGREAILAVHARTRPLDDA 343 >gi|15966502|ref|NP_386855.1| Holliday junction DNA helicase B [Sinorhizobium meliloti 1021] gi|307300461|ref|ZP_07580241.1| Holliday junction DNA helicase RuvB [Sinorhizobium meliloti BL225C] gi|307318326|ref|ZP_07597761.1| Holliday junction DNA helicase RuvB [Sinorhizobium meliloti AK83] gi|20140125|sp|Q92M92|RUVB_RHIME RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|15075773|emb|CAC47328.1| Probable holliday junction DNA helicase [Sinorhizobium meliloti 1021] gi|306896008|gb|EFN26759.1| Holliday junction DNA helicase RuvB [Sinorhizobium meliloti AK83] gi|306904627|gb|EFN35211.1| Holliday junction DNA helicase RuvB [Sinorhizobium meliloti BL225C] Length = 346 Score = 39.4 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 48/264 (18%), Positives = 90/264 (34%), Gaps = 43/264 (16%) Query: 4 MKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDD---LLVHSAIEQAVRLIDSWP 60 M E P+K+ D Q +R + + + +D Sbjct: 1 MSEAARLIAPEKRGEDLDATMRPQ-TLDEFTGQAEARANLKIFIEAARNRG--EALDH-- 55 Query: 61 SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120 V+ VGP G GK+ LA I + + S + LE+ D+L Sbjct: 56 ------VLFVGPPGLGKTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLF 109 Query: 121 FNDTQLFHIINSIHQ-------YDSSLLMTARTFPVSWGVCLPDLC--------SRLKAA 165 ++ H +N + D L + P + V + DL +RL Sbjct: 110 IDEI---HRLNPAVEEILYPAMEDFQLDLIIGEGPAARSVKI-DLAKFTLVAATTRLGLL 165 Query: 166 TV---------VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216 T V+++ + LE ++ + + + + A I +R + A +L+ Sbjct: 166 TTPLRDRFGIPVRLNFYTVEELELIVRRGARLMGLGMTDEGAREIARRARGTPRIAGRLL 225 Query: 217 DKM-DNLALSRGMGITRSLAAEVL 239 ++ D ++R +T +A E L Sbjct: 226 RRVRDFAEVARAEAVTLKIADEAL 249 >gi|332188786|ref|ZP_08390497.1| AAA ATPase, CDC48 subfamily protein [Sphingomonas sp. S17] gi|332011185|gb|EGI53279.1| AAA ATPase, CDC48 subfamily protein [Sphingomonas sp. S17] Length = 763 Score = 39.4 bits (91), Expect = 0.46, Method: Composition-based stats. Identities = 33/197 (16%), Positives = 70/197 (35%), Gaps = 36/197 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRST------------RFSNIAKSLDSILIDTRKP 110 P + V+L GP G+GK+ LA +++S + + + L I + K Sbjct: 236 PPKGVLLHGPPGTGKTRLARAVANESDAQFFLINGPEIMGSAYGESEQRLREIFEEATKS 295 Query: 111 ----VLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 V +++ID + QL +++ + + +++ A P + Sbjct: 296 APSIVFIDEIDSIAPKRDRVQGEAEKRLVAQLLTLMDGLEARANLVIIAATNRPEAIDEA 355 Query: 155 LPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 L R VV + PD+ +++ R + + K+ + R + F Sbjct: 356 LRR-PGRFDREIVVGV--PDERGRREIL--GIHTRGMPLGDKVDLAELART--TFGFVGA 408 Query: 215 LVDKMDN-LALSRGMGI 230 + + A+ I Sbjct: 409 DLAALTREAAIEAVRRI 425 Score = 37.1 bits (85), Expect = 2.1, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 21/38 (55%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P++ +L GP G+GK+ LA + ++ + + + L Sbjct: 509 PAKGFLLYGPPGTGKTLLAKAVAREAEANFIATKSSDL 546 >gi|326573491|gb|EGE23457.1| recombination factor protein RarA [Moraxella catarrhalis O35E] Length = 412 Score = 39.4 bits (91), Expect = 0.46, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 62/174 (35%), Gaps = 21/174 (12%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIA---------KSLDSILIDTRKPVLL 113 +IL G +G GK+ LA + +D S ++ D L V + Sbjct: 39 PSLILHGSAGIGKTTLAMLLADAVGRPFRPLSAVSSGVKELREVLRSDDGLFHEPPVVFV 98 Query: 114 EDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 ++I + L + L+ A T S+ V L SR V K+ Sbjct: 99 DEIHRFNKAQQDALL----QAVETGEITLIGATTENPSFSVNNA-LLSR---CQVYKLEP 150 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVFAEKLVDKMDNLALS 225 DD + +IV+ + K + + ++ S + ++ ++ +A + Sbjct: 151 LSDDEIYALIVRAIRQDTLLKTKDIQINNLAALIDLSQGDGRRALNLLELVAAA 204 >gi|325187094|emb|CCA21636.1| 26S proteasome AAAATPase subunit RPT2a putative [Albugo laibachii Nc14] Length = 442 Score = 39.4 bits (91), Expect = 0.46, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL G G+GK+ LA ++++ +T + L + ++ E Sbjct: 220 PPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRE 271 >gi|258626330|ref|ZP_05721177.1| conserved hypothetical protein [Vibrio mimicus VM603] gi|258581382|gb|EEW06284.1| conserved hypothetical protein [Vibrio mimicus VM603] Length = 449 Score = 39.4 bits (91), Expect = 0.46, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 6/74 (8%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G+GK+ LA + ++ + + A + I E+ L T L Sbjct: 54 MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAREN--KLSGRRTIL 111 Query: 127 F----HIINSIHQY 136 F H N Q Sbjct: 112 FVDEVHRFNKSQQD 125 >gi|255718169|ref|XP_002555365.1| KLTH0G07524p [Lachancea thermotolerans] gi|238936749|emb|CAR24928.1| KLTH0G07524p [Lachancea thermotolerans] Length = 445 Score = 39.4 bits (91), Expect = 0.46, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + ++L GP G+GK+ A ++++ +T I L + ++ E Sbjct: 220 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 271 >gi|226286751|gb|EEH42264.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18] Length = 928 Score = 39.4 bits (91), Expect = 0.46, Method: Composition-based stats. Identities = 9/25 (36%), Positives = 18/25 (72%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSR 89 +V++L GP G GK+ LA++ + ++ Sbjct: 321 KVLVLTGPPGLGKTTLAHVCARQAG 345 >gi|295674171|ref|XP_002797631.1| chromosome transmission fidelity protein [Paracoccidioides brasiliensis Pb01] gi|226280281|gb|EEH35847.1| chromosome transmission fidelity protein [Paracoccidioides brasiliensis Pb01] Length = 983 Score = 39.4 bits (91), Expect = 0.46, Method: Composition-based stats. Identities = 9/25 (36%), Positives = 18/25 (72%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSR 89 +V++L GP G GK+ LA++ + ++ Sbjct: 326 KVLVLTGPPGLGKTTLAHVCARQAG 350 >gi|225426102|ref|XP_002276951.1| PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] Length = 797 Score = 39.4 bits (91), Expect = 0.46, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 21/32 (65%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P R ++L GP G+GK+ LA ++++ ++ + Sbjct: 519 PCRGILLFGPPGTGKTMLAKAIANEAGASFIN 550 >gi|297742262|emb|CBI34411.3| unnamed protein product [Vitis vinifera] Length = 836 Score = 39.4 bits (91), Expect = 0.46, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 21/32 (65%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P R ++L GP G+GK+ LA ++++ ++ + Sbjct: 558 PCRGILLFGPPGTGKTMLAKAIANEAGASFIN 589 >gi|91200430|emb|CAJ73477.1| hypothetical protein kuste2727 [Candidatus Kuenenia stuttgartiensis] Length = 395 Score = 39.4 bits (91), Expect = 0.46, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 55/149 (36%), Gaps = 16/149 (10%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 V L+GP SGK+ LA +S ST + ++ + + + +D + P L++ L+ + Sbjct: 29 SYPAVALIGPRQSGKTTLA-----RSLSTDYFDLEQEPEQLRLDVQWPSLIKTKRLIVLD 83 Query: 123 DTQ----LF----HIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLK---AATVVKIS 171 + Q LF I+ Q L+ P L RL + Sbjct: 84 EAQSWPELFPRLRGAIDMERQRLGRFLLLGSVSPALMKHVSESLAGRLSLVELTPLTLTE 143 Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 LPD E + F D + + + Sbjct: 144 LPDIPMTELWLRGGFPDGGVLTSDRYPQW 172 >gi|60735079|dbj|BAD91025.1| valosin containing protein-2 [Eisenia fetida] gi|147225258|dbj|BAF62456.1| valosine containing peptide-2 [Eisenia fetida] Length = 763 Score = 39.4 bits (91), Expect = 0.46, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 18/32 (56%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 PS+ V+ GP G GK+ LA + + ++ S Sbjct: 503 PSKGVLFYGPPGCGKTLLAKAIATQCQANFIS 534 >gi|27803008|emb|CAD60711.1| unnamed protein product [Podospora anserina] Length = 820 Score = 39.4 bits (91), Expect = 0.46, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 31/50 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 P+R ++L GP G+GK+ LA + +S+ST FS A SL S + + ++ Sbjct: 572 PARGMLLFGPPGTGKTMLARAVATESKSTFFSISASSLTSKYLGESEKLV 621 >gi|9367755|emb|CAB97492.1| 26S proteasome ATPase subunit S4 [Giardia intestinalis] Length = 247 Score = 39.4 bits (91), Expect = 0.46, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 25/64 (39%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P R IL GPSG+GKS LA ++++ + L ++ E N Sbjct: 26 PPRSCILHGPSGTGKSLLARACANETSACYMKMAGSELIQXYSGEGPRLVRELFKAAKAN 85 Query: 123 DTQL 126 + Sbjct: 86 QPTI 89 >gi|86608120|ref|YP_476882.1| cell division protein FtsH [Synechococcus sp. JA-2-3B'a(2-13)] gi|123738037|sp|Q2JNP0|FTSH_SYNJB RecName: Full=ATP-dependent zinc metalloprotease FtsH gi|86556662|gb|ABD01619.1| cell division protein FtsH [Synechococcus sp. JA-2-3B'a(2-13)] Length = 638 Score = 39.4 bits (91), Expect = 0.46, Method: Composition-based stats. Identities = 34/203 (16%), Positives = 65/203 (32%), Gaps = 46/203 (22%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110 R V+LVGP G+GK+ LA + ++ FS + + Sbjct: 203 RGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFEQAKQNAP 262 Query: 111 --VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGV 153 V +++ID + ND QL ++ +++ A P Sbjct: 263 CIVFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLTEMDGFEGNSGIIVIAATNRPDVLDA 322 Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSL 209 L L+ V + PD +++ R + + + +R Sbjct: 323 AL------LRPGRFDRQVTVDRPDFQGRLEILKVHA--RGKTLSADVDLEKLARRTP-GF 373 Query: 210 VFAEKLVDKMDNLA-LSRGMGIT 231 A L + ++ A L+ +T Sbjct: 374 TGA-DLANLLNEAAILAARRNLT 395 >gi|332982883|ref|YP_004464324.1| ATP-dependent metalloprotease FtsH [Mahella australiensis 50-1 BON] gi|332700561|gb|AEE97502.1| ATP-dependent metalloprotease FtsH [Mahella australiensis 50-1 BON] Length = 595 Score = 39.4 bits (91), Expect = 0.46, Method: Composition-based stats. Identities = 25/166 (15%), Positives = 50/166 (30%), Gaps = 59/166 (35%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110 R VIL GP G+GK+ LA + ++ ++ + + Sbjct: 189 RGVILYGPPGTGKTLLARALAGEAGVPFYAVSGSDFVQMYVGVGAARIRSLFKKAREQGK 248 Query: 111 --VLLEDIDLLDF-----------ND-----TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 + +++ID L ++ L ++ ++ ++M A Sbjct: 249 CVIFIDEIDALGKKRNGGRMDGGSDERDQTLNALLAEMSGFNENQGIVIMAATN------ 302 Query: 153 VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFID-KKL 197 RL D E ++ DRQI + + Sbjct: 303 --------RL------------DVLDEALLRPGRFDRQIEVGLPDV 328 >gi|296132700|ref|YP_003639947.1| Holliday junction DNA helicase RuvB [Thermincola sp. JR] gi|296031278|gb|ADG82046.1| Holliday junction DNA helicase RuvB [Thermincola potens JR] Length = 342 Score = 39.4 bits (91), Expect = 0.46, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 67/185 (36%), Gaps = 41/185 (22%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G GK+ LA+I +++ +++ L D+L ++ Sbjct: 56 VLLFGPPGLGKTTLAHIIANEMGVNIRITSGPAIERPGDLAAILTNLGQGDILFIDEI-- 113 Query: 127 FHIINSIHQ-------YDSSL-LMTARTFPVS-WGVCLPD------------LCS--RLK 163 H +N + D +L ++ + + LP L S R + Sbjct: 114 -HRLNRSVEEVLYPAMEDYALDIIIGKGPSARSLRIDLPKFTLIGATTRAGMLTSPLRDR 172 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQIFIDKK--------------LAAYIVQRMERSL 209 ++++ + L +++ + A Q+ ID + +A +++R+ R Sbjct: 173 FGVILRLEFYTAEELMEIVRRAAAILQVTIDDEGAYEIARRSRGTPRVANRLLKRV-RDF 231 Query: 210 VFAEK 214 + Sbjct: 232 AQVKA 236 >gi|293400875|ref|ZP_06645020.1| putative primosome component (helicase loader) [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305901|gb|EFE47145.1| putative primosome component (helicase loader) [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 305 Score = 39.4 bits (91), Expect = 0.46, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 11/73 (15%) Query: 63 PSRVVILVGPSGSGKSCLA----NIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE---- 114 S+ + L G G+GKS LA N ++ K RS F N+ K + + + ++P+ +E Sbjct: 154 SSKGLYLWGKPGAGKSYLAAGMCNYFAKKKRSVSFVNVPKLISDLKMMFQEPLAMEAKLA 213 Query: 115 ---DIDLLDFNDT 124 +D+L +D Sbjct: 214 SIRHVDVLVLDDI 226 >gi|258645671|ref|ZP_05733140.1| ATP-dependent protease HslVU, ATPase subunit [Dialister invisus DSM 15470] gi|260403038|gb|EEW96585.1| ATP-dependent protease HslVU, ATPase subunit [Dialister invisus DSM 15470] Length = 453 Score = 39.4 bits (91), Expect = 0.46, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 13/71 (18%) Query: 33 PRCLGISRDDLLVHSAIE---QAVRLIDSWPSWPSRV----------VILVGPSGSGKSC 79 PR + D+ +V AV L + W S ++L+GP+G GK+ Sbjct: 6 PRRIVEYLDEYIVGQQNAKRSVAVALRNRWRSSRLPKEIAREVSPKNILLIGPTGVGKTE 65 Query: 80 LANIWSDKSRS 90 +A + + + Sbjct: 66 IARRIAALTGA 76 >gi|260578312|ref|ZP_05846228.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Corynebacterium jeikeium ATCC 43734] gi|258603614|gb|EEW16875.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Corynebacterium jeikeium ATCC 43734] Length = 424 Score = 39.4 bits (91), Expect = 0.46, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 7/75 (9%) Query: 45 VHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSIL 104 V + A R D S +++L GP+GSGK+ LA + R ++ ++ Sbjct: 96 VEESNATARRSDDEVELAKSNILML-GPTGSGKTYLAQSLA------RMLDVPFAIADAT 148 Query: 105 IDTRKPVLLEDIDLL 119 T + ED++ + Sbjct: 149 SLTEAGYVGEDVENI 163 >gi|255727949|ref|XP_002548900.1| ribosome biogenesis ATPase RIX7 [Candida tropicalis MYA-3404] gi|240133216|gb|EER32772.1| ribosome biogenesis ATPase RIX7 [Candida tropicalis MYA-3404] Length = 825 Score = 39.4 bits (91), Expect = 0.46, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P+ V++ GP G GK+ LA +++SR+ S Sbjct: 556 PAGVLM-WGPPGCGKTLLAKAVANESRANFIS 586 Score = 37.4 bits (86), Expect = 1.7, Method: Composition-based stats. Identities = 12/25 (48%), Positives = 16/25 (64%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDK 87 P R V+L GP G GK+ LAN + + Sbjct: 226 PPRGVLLYGPPGCGKTTLANALAGE 250 >gi|255552465|ref|XP_002517276.1| calmodulin-binding protein, putative [Ricinus communis] gi|223543539|gb|EEF45069.1| calmodulin-binding protein, putative [Ricinus communis] Length = 1094 Score = 39.4 bits (91), Expect = 0.46, Method: Composition-based stats. Identities = 26/170 (15%), Positives = 63/170 (37%), Gaps = 35/170 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS----------------NIAKSLDSILID 106 P++ V+L GP+G+GK+ LA + + + S + + S Sbjct: 451 PTKGVLLHGPTGTGKTSLARLCALDAGVNLLSVNGPEIISQYHGESEQALHEVFASASRG 510 Query: 107 TRKPVLLEDIDLLD-----FND-------TQLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 V ++++D + + L ++++ + + D +++ A P S Sbjct: 511 APAVVFIDELDSIAPARKDGGEALSQRMVATLLNLMDGVSRTDGVIIIAATNRPDSIE-- 568 Query: 155 LPDLC--SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIV 202 P L RL ++I +P ++ + + R+ + ++ Sbjct: 569 -PALRRPGRLD--REIEIGVPSPKQRLDILNTLLSQREHSLSDLQVQHLA 615 >gi|194751155|ref|XP_001957892.1| GF10639 [Drosophila ananassae] gi|190625174|gb|EDV40698.1| GF10639 [Drosophila ananassae] Length = 972 Score = 39.4 bits (91), Expect = 0.46, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 PS V+ L GP G GK+ LA ++++ S L ++ + + + Sbjct: 724 PSGVL-LCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESERAV 772 Score = 39.4 bits (91), Expect = 0.50, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 16/25 (64%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDK 87 P+R ++L GP G GK+ LA S + Sbjct: 292 PARGLLLHGPPGCGKTFLARAISGQ 316 >gi|170077793|ref|YP_001734431.1| cell division protein [Synechococcus sp. PCC 7002] gi|169885462|gb|ACA99175.1| cell division protein [Synechococcus sp. PCC 7002] Length = 637 Score = 39.4 bits (91), Expect = 0.46, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 66/201 (32%), Gaps = 45/201 (22%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110 R ++L+GP G+GK+ LA + ++ FS + + Sbjct: 214 RGMLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFRKAQENAP 273 Query: 111 --VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGV 153 V +++ID + ND QL ++ +++ A P Sbjct: 274 CLVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEGNSGIIVIAATNRPDVLDQ 333 Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L+ V + PD ++ D+++ D L I +R Sbjct: 334 AL------LRPGRFDRQVTVDYPDRLGRLAILEVHAQDKKVAEDVDL-EAIARRTP-GFS 385 Query: 211 FAEKLVDKMDNLAL--SRGMG 229 A L + ++ A+ +R Sbjct: 386 GA-DLANLLNEAAIFTARRRK 405 >gi|146413066|ref|XP_001482504.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC 6260] Length = 445 Score = 39.4 bits (91), Expect = 0.46, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + ++L GP G+GK+ A ++++ +T I L + ++ E Sbjct: 220 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRE 271 >gi|115468870|ref|NP_001058034.1| Os06g0607800 [Oryza sativa Japonica Group] gi|51090352|dbj|BAD35613.1| putative 26S proteasome regulatory particle triple-A ATPase subunit4 [Oryza sativa Japonica Group] gi|51091388|dbj|BAD36121.1| putative 26S proteasome regulatory particle triple-A ATPase subunit4 [Oryza sativa Japonica Group] gi|113596074|dbj|BAF19948.1| Os06g0607800 [Oryza sativa Japonica Group] gi|125597814|gb|EAZ37594.1| hypothetical protein OsJ_21925 [Oryza sativa Japonica Group] gi|215693190|dbj|BAG88572.1| unnamed protein product [Oryza sativa Japonica Group] gi|215694896|dbj|BAG90087.1| unnamed protein product [Oryza sativa Japonica Group] Length = 401 Score = 39.4 bits (91), Expect = 0.46, Method: Composition-based stats. Identities = 31/196 (15%), Positives = 61/196 (31%), Gaps = 48/196 (24%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V+L GP G+GK+ LA + + ++ ++ I ++ Sbjct: 174 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFSYAREH 233 Query: 113 ------LEDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSW 151 +++ID + L ++N + ++ A P Sbjct: 234 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDELGKVKMIMATNRPDVL 293 Query: 152 GVCLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L RL ++I LP++ +V+ A I + E Sbjct: 294 DPAL--LRPGRLD--RKIEIPLPNEQSRMEVLKIHAAG------------IAKHGEIDYE 337 Query: 211 FAEKLVDKMDNLALSR 226 KL + + L Sbjct: 338 AVVKLAEGFNGADLRN 353 >gi|12852148|dbj|BAB29293.1| unnamed protein product [Mus musculus] Length = 389 Score = 39.4 bits (91), Expect = 0.46, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + ++ S+ I ++ E Sbjct: 166 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIRE-------- 217 Query: 123 DTQLFHIINSIHQYD 137 + N + + Sbjct: 218 ------MFNYVRDHQ 226 >gi|68171607|ref|ZP_00544977.1| Holliday junction DNA helicase RuvB [Ehrlichia chaffeensis str. Sapulpa] gi|88657636|ref|YP_507140.1| Holliday junction DNA helicase B [Ehrlichia chaffeensis str. Arkansas] gi|123763771|sp|Q2GHE3|RUVB_EHRCR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|67998974|gb|EAM85655.1| Holliday junction DNA helicase RuvB [Ehrlichia chaffeensis str. Sapulpa] gi|88599093|gb|ABD44562.1| holliday junction DNA helicase RuvB [Ehrlichia chaffeensis str. Arkansas] Length = 329 Score = 39.4 bits (91), Expect = 0.46, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 8/73 (10%) Query: 63 PSRVVILVGPSGSGKSCLANIWSD------KSRSTRFSNIAKSLDSIL--IDTRKPVLLE 114 P V+L GP G GK+ LA+I + +S + + A L +IL + + + ++ Sbjct: 50 PMDHVLLYGPPGLGKTTLAHIIAKELKVNFRSTAGPLLSKAGDLAAILTNLQAKDILFID 109 Query: 115 DIDLLDFNDTQLF 127 +I L+ N ++ Sbjct: 110 EIHRLNRNIEEIL 122 >gi|67540186|ref|XP_663867.1| hypothetical protein AN6263.2 [Aspergillus nidulans FGSC A4] gi|40739457|gb|EAA58647.1| hypothetical protein AN6263.2 [Aspergillus nidulans FGSC A4] gi|259479525|tpe|CBF69827.1| TPA: mitochondrial AAA ATPase, putative (AFU_orthologue; AFUA_2G12920) [Aspergillus nidulans FGSC A4] Length = 956 Score = 39.4 bits (91), Expect = 0.46, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 17/30 (56%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 ++L GP G+GK+ LA + +S +T Sbjct: 685 PGLLLYGPPGTGKTLLAKAVARESGATVLE 714 >gi|323498307|ref|ZP_08103309.1| recombination factor protein RarA [Vibrio sinaloensis DSM 21326] gi|323316735|gb|EGA69744.1| recombination factor protein RarA [Vibrio sinaloensis DSM 21326] Length = 448 Score = 39.4 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 55/173 (31%), Gaps = 40/173 (23%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +IL GP G+GK+ LA + ++ + + A + I E+ T L Sbjct: 54 MILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAREN--KRAGRRTIL 111 Query: 127 F----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKISL 172 F H N Q D ++ T L SR A V K++ Sbjct: 112 FVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNA---LLSR---ARVYKLTS 165 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK-LVD-KMDNLA 223 + + + + D ER L + VD +D LA Sbjct: 166 LSQADILQALEQAIQDS----------------ERGLGAIKAQFVDNALDRLA 202 >gi|322703225|gb|EFY94837.1| ATPase family AAA domain-containing protein 1-A [Metarhizium anisopliae ARSEF 23] Length = 920 Score = 39.4 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 8/46 (17%), Positives = 22/46 (47%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 + GP G+GK+ L + S ++ + + ++ S + + ++ Sbjct: 587 ALFYGPPGTGKTHLCRAIAKASGASMLAIDSAAVHSKYVSETERLI 632 >gi|295107692|emb|CBL05235.1| phage DNA replication protein (predicted replicative helicase loader) [Gordonibacter pamelaeae 7-10-1-b] Length = 264 Score = 39.4 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 54/136 (39%), Gaps = 33/136 (24%) Query: 51 QAVRLIDSWPSWPSRVVILVGPSGSGKSC----LANIWSDKSRSTRFSNIAKSLDSILID 106 +A R + + S + + +VG G+GK+ LA + + + R + LDS+ Sbjct: 103 EAARYVVGFGSAGDKGLYIVGGVGTGKTYEACALAKSFIEAGYTVRVTTSLAMLDSVSRS 162 Query: 107 TRKP-------------VLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVS 150 P ++++D+ + + T LF IINS ++ + T++ Sbjct: 163 YDDPSIAGISIFTGVDVLVIDDLGKENANAWALTTLFQIINSRYEDGKPTIYTSQY---- 218 Query: 151 WGVCLPDLCS---RLK 163 DL S R+ Sbjct: 219 ------DLQSLQRRMS 228 >gi|260654226|ref|ZP_05859716.1| protein RecA [Jonquetella anthropi E3_33 E1] gi|260630859|gb|EEX49053.1| protein RecA [Jonquetella anthropi E3_33 E1] Length = 373 Score = 39.4 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 43/114 (37%), Gaps = 13/114 (11%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL---- 119 R+V + GP G+GK+ LA +++++ + L L D++ L Sbjct: 63 GRIVEIFGPEGTGKTTLALHAIAETQASGGIAAFIDAEHALDPRLAAALGVDVESLYLAQ 122 Query: 120 -DFNDTQLFHIINSIHQYDSSLL----MTARTFPVSWGVCLPD----LCSRLKA 164 D + L+ + + ++ + A T + D L +RL + Sbjct: 123 PDSGEQALYILETLVRSSAVDMVVVDSVAALTPQAEIDGQIGDPSVGLQARLMS 176 >gi|257866969|ref|ZP_05646622.1| AAA ATPase [Enterococcus casseliflavus EC30] gi|257873303|ref|ZP_05652956.1| AAA ATPase [Enterococcus casseliflavus EC10] gi|257801025|gb|EEV29955.1| AAA ATPase [Enterococcus casseliflavus EC30] gi|257807467|gb|EEV36289.1| AAA ATPase [Enterococcus casseliflavus EC10] Length = 425 Score = 39.4 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 57/138 (41%), Gaps = 22/138 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117 +IL GP G+GK+ +A+ + +R + R N A + + +LL+++ Sbjct: 42 MILYGPPGTGKTSIASAIAGSTRYAFRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEVH 101 Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 LD D L H+ + +++ A T + P + SR + ++ + Sbjct: 102 RLDKTKQDFLLPHL-----ESGKIIMIGATTENPYITIN-PAIRSR---TQIFEVKPLQE 152 Query: 176 DFLEKVIVKMFAD--RQI 191 + + I + AD R + Sbjct: 153 EDILTAIDQALADETRGL 170 >gi|294932527|ref|XP_002780317.1| 26S protease regulatory subunit S10B, putative [Perkinsus marinus ATCC 50983] gi|239890239|gb|EER12112.1| 26S protease regulatory subunit S10B, putative [Perkinsus marinus ATCC 50983] Length = 398 Score = 39.4 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 23/48 (47%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 V+L GP G+GK+ LA + ++ +A ++ I V+ E Sbjct: 179 VLLYGPPGTGKTLLARAMAHNMTASFIKVVASAIVDKYIGESARVIRE 226 >gi|294891603|ref|XP_002773646.1| 26S protease regulatory subunit S10B, putative [Perkinsus marinus ATCC 50983] gi|239878850|gb|EER05462.1| 26S protease regulatory subunit S10B, putative [Perkinsus marinus ATCC 50983] Length = 394 Score = 39.4 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 23/48 (47%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 V+L GP G+GK+ LA + ++ +A ++ I V+ E Sbjct: 175 VLLYGPPGTGKTLLARAMAHNMTASFIKVVASAIVDKYIGESARVIRE 222 >gi|260946513|ref|XP_002617554.1| hypothetical protein CLUG_02998 [Clavispora lusitaniae ATCC 42720] gi|238849408|gb|EEQ38872.1| hypothetical protein CLUG_02998 [Clavispora lusitaniae ATCC 42720] Length = 457 Score = 39.4 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 60/148 (40%), Gaps = 24/148 (16%) Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYD-SSLLMTA 144 DK R+ +AK +D + + VL ID ++ D ++F +N + + +++ A Sbjct: 275 DKLRAEVNKVVAKYIDQGVAELIPGVLF--IDEVNMLDIEIFTYLNRALESSMAPVVVLA 332 Query: 145 RTF--------------PVSWGVCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQ 190 P PDL RL +VK +++ ++ +I K Sbjct: 333 SNRGMTTIRGTEDATKYPHGCP---PDLIDRL---LIVKTLPYNEEEIKVIISKRATLEN 386 Query: 191 IFIDKKLAAYIVQR-MERSLVFAEKLVD 217 + + + + Q ++ SL +A +L+ Sbjct: 387 LNVSGDALSKLAQHGVQSSLRYALQLLA 414 >gi|257790542|ref|YP_003181148.1| IstB domain-containing protein ATP-binding protein [Eggerthella lenta DSM 2243] gi|257474439|gb|ACV54759.1| IstB domain protein ATP-binding protein [Eggerthella lenta DSM 2243] Length = 264 Score = 39.4 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 54/136 (39%), Gaps = 33/136 (24%) Query: 51 QAVRLIDSWPSWPSRVVILVGPSGSGKSC----LANIWSDKSRSTRFSNIAKSLDSILID 106 +A R + + S + + +VG G+GK+ LA + + + R + LDS+ Sbjct: 103 EAARYVVGFGSAGDKGLYIVGGVGTGKTYEACALAKSFIEAGYTVRVTTSLAMLDSVSRS 162 Query: 107 TRKP-------------VLLEDI---DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVS 150 P ++++D+ + + T LF IINS ++ + T++ Sbjct: 163 YDDPSIAGISIFTGVDVLVIDDLGKENANAWALTTLFQIINSRYEDGKPTIYTSQY---- 218 Query: 151 WGVCLPDLCS---RLK 163 DL S R+ Sbjct: 219 ------DLQSLQRRMS 228 >gi|224107112|ref|XP_002333569.1| predicted protein [Populus trichocarpa] gi|222837200|gb|EEE75579.1| predicted protein [Populus trichocarpa] Length = 211 Score = 39.4 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 18/32 (56%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P + V+L GP G+GK+ LA +S + + Sbjct: 44 PQKGVLLYGPPGTGKTMLAKAIVRESGAVFIN 75 >gi|221215299|ref|ZP_03588264.1| IstB domain protein ATP-binding protein [Burkholderia multivorans CGD1] gi|221164731|gb|EED97212.1| IstB domain protein ATP-binding protein [Burkholderia multivorans CGD1] Length = 261 Score = 39.4 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 46/108 (42%), Gaps = 23/108 (21%) Query: 67 VILVGPSGSGKSCLANIW--SDKSRSTRFSNIAKSLDSILIDTRK---------PVLLED 115 V+LVG G+GK+ LA + +R ++D + ++ L+ Sbjct: 100 VVLVGGPGTGKTHLATAIGVAGITRHGSRVRFYSTVDLVNALEQEKAQGKAGRIAATLQR 159 Query: 116 IDLLDFND-----------TQLFHIINSIHQYDSSLLMTARTFPVSWG 152 +DL+ ++ LFH+++ ++++ +S+++T W Sbjct: 160 MDLVILDELGYLPFSQAGGALLFHLLSKLYEH-TSVMITTNLDFKEWS 206 >gi|218295295|ref|ZP_03496131.1| peptidase M41 FtsH extracellular [Thermus aquaticus Y51MC23] gi|218244498|gb|EED11023.1| peptidase M41 FtsH extracellular [Thermus aquaticus Y51MC23] Length = 283 Score = 39.4 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 21/48 (43%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 V+LVGP G GK+ +A + ++R + + + + + Sbjct: 192 VLLVGPPGVGKTHIARAVAGEARVPFITASGSDFVEMFVGVGAARVRD 239 >gi|220922586|ref|YP_002497888.1| putative deoxyribonuclease [Methylobacterium nodulans ORS 2060] gi|219947193|gb|ACL57585.1| putative deoxyribonuclease [Methylobacterium nodulans ORS 2060] Length = 373 Score = 39.4 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 52 AVRLIDSWPSWPSRVVI--LVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK 109 A+ I +W P R I L G +G+GK+ LA + + R T ++++ ++ Sbjct: 10 ALHEIAAWRRAPGRKQIFRLFGFAGTGKTTLARAAAAEVRGTVLFAAFTGKAALVLRSKG 69 Query: 110 P 110 Sbjct: 70 C 70 >gi|126466168|ref|YP_001041277.1| ATPase central domain-containing protein [Staphylothermus marinus F1] gi|126014991|gb|ABN70369.1| AAA ATPase, central domain protein [Staphylothermus marinus F1] Length = 379 Score = 39.4 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 21/40 (52%), Gaps = 1/40 (2%) Query: 61 SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 WP ++ L GP G GK+ +A +++ +T + ++ Sbjct: 135 GWPKGIL-LFGPPGCGKTLIAYALANEINATLINVSPATI 173 >gi|72386993|ref|XP_843921.1| katanin [Trypanosoma brucei TREU927] gi|62176401|gb|AAX70510.1| katanin, putative [Trypanosoma brucei] gi|70800453|gb|AAZ10362.1| katanin, putative [Trypanosoma brucei brucei strain 927/4 GUTat10.1] gi|261327030|emb|CBH10005.1| katanin, putative [Trypanosoma brucei gambiense DAL972] Length = 444 Score = 39.4 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 21/38 (55%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 P + ++L GP G+GKS LA + ++ T S + L Sbjct: 161 PWKGILLYGPPGTGKSYLAKAVATEADGTFLSVSSADL 198 >gi|148234030|ref|NP_001080548.1| proteasome (prosome, macropain) 26S subunit, ATPase, 1 [Xenopus laevis] gi|32484378|gb|AAH54287.1| Pros26.4-prov protein [Xenopus laevis] Length = 440 Score = 39.4 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 25/52 (48%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + VIL G G+GK+ LA ++++ +T + L + ++ E Sbjct: 218 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRVVGLELIQKYLGDGPKLVRE 269 >gi|73670349|ref|YP_306364.1| cell division cycle protein [Methanosarcina barkeri str. Fusaro] gi|72397511|gb|AAZ71784.1| cell division cycle protein [Methanosarcina barkeri str. Fusaro] Length = 764 Score = 39.4 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 18/34 (52%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100 V+L GP G+GK+ LA + +S + + L Sbjct: 526 VLLYGPPGTGKTLLAKAIAHESEANFITAKGSDL 559 >gi|66805379|ref|XP_636422.1| 26S protease regulatory subunit 6B [Dictyostelium discoideum AX4] gi|464860|sp|P34123|PRS6B_DICDI RecName: Full=26S protease regulatory subunit 6B homolog; AltName: Full=Tat-binding protein homolog 2 gi|290055|gb|AAA33253.1| HIV1 TAT-binding protein [Dictyostelium discoideum] gi|60464797|gb|EAL62917.1| 26S protease regulatory subunit 6B [Dictyostelium discoideum AX4] Length = 403 Score = 39.4 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120 P R V+L GP G+GK+ LA + + + + + P L+ D+ L Sbjct: 183 PPRGVLLYGPPGTGKTMLAKAVAHHTSAAFIRVVGSEFVQKYL-GEGPRLVRDVFRLA 239 >gi|312877190|ref|ZP_07737159.1| Holliday junction DNA helicase RuvB [Caldicellulosiruptor lactoaceticus 6A] gi|311795999|gb|EFR12359.1| Holliday junction DNA helicase RuvB [Caldicellulosiruptor lactoaceticus 6A] Length = 338 Score = 39.4 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 38/210 (18%), Positives = 81/210 (38%), Gaps = 37/210 (17%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P V+L GP G GK+ LANI +++ +I + + V + L + Sbjct: 50 PLDHVLLYGPPGLGKTTLANIIANEMG----VDIKVTSGPAIERAGDLVAI----LTNIG 101 Query: 123 DTQ-LF----HIINS--------IHQYDSSLLMTARTFPV-SWGVCLPD----------- 157 + LF H +N + +M + + + LP Sbjct: 102 ENNILFIDEIHRLNRTIEEVLYPAMEDKKVDIMIGKGPSAKTIRLTLPPFTLIGATTRAG 161 Query: 158 -LCS--RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEK 214 L S R + + ++ + L +++++ + + I+K+ I +R + A + Sbjct: 162 LLSSPLRDRFGIIERLDYYTVEELSQIVMRSASILKCDIEKEACIEIAKRSRGTPRVANR 221 Query: 215 LVDKMDNLALSRGMG-ITRSLAAEVLKETQ 243 L+ ++ + A+ + G IT +A L+ + Sbjct: 222 LLRRLRDYAMVKHTGSITYEVAKSGLEMFE 251 >gi|302388828|ref|YP_003824649.1| hypothetical protein Toce_0240 [Thermosediminibacter oceani DSM 16646] gi|302199456|gb|ADL07026.1| conserved hypothetical protein [Thermosediminibacter oceani DSM 16646] Length = 274 Score = 39.4 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 18/34 (52%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAK 98 +V+ LVG SG+GKS A+I + + + Sbjct: 2 KVIALVGKSGTGKSHKAHIVARHYGAELIIDDGL 35 >gi|291523951|emb|CBK89538.1| ATP-dependent metalloprotease FtsH [Eubacterium rectale DSM 17629] Length = 703 Score = 39.4 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 43/141 (30%), Gaps = 45/141 (31%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 +LVGP G+GK+ LA + ++ FS + + Sbjct: 239 ALLVGPPGTGKTLLAKAVAGEAGVPFFSLAGSDFVEMFVGVGASRVRDLFKEAQKMAPCI 298 Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + ND QL ++ L++ A P L Sbjct: 299 IFIDEIDAIGKSRDSRYGGGNDEREQTLNQLLAEMDGFDTSKGLLILAATNRPEVLDKAL 358 Query: 156 --------------PDLCSRL 162 PDL RL Sbjct: 359 LRPGRFDRRIIVDKPDLKGRL 379 >gi|257877045|ref|ZP_05656698.1| AAA ATPase [Enterococcus casseliflavus EC20] gi|257811211|gb|EEV40031.1| AAA ATPase [Enterococcus casseliflavus EC20] Length = 425 Score = 39.4 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 57/138 (41%), Gaps = 22/138 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117 +IL GP G+GK+ +A+ + +R + R N A + + +LL+++ Sbjct: 42 MILYGPPGTGKTSIASAIAGSTRYAFRMLNAATDTKKDLQIVAEEAKMSGTVILLLDEVH 101 Query: 118 LLD--FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDD 175 LD D L H+ + +++ A T + P + SR + ++ + Sbjct: 102 RLDKTKQDFLLPHL-----ESGKIIMIGATTENPYITIN-PAIRSR---TQIFEVKPLQE 152 Query: 176 DFLEKVIVKMFAD--RQI 191 + + I + AD R + Sbjct: 153 EDILTAIDQALADETRGL 170 >gi|238854211|ref|ZP_04644556.1| ABC-type proline/glycine betaine transport system, ATPase component [Lactobacillus gasseri 202-4] gi|238833147|gb|EEQ25439.1| ABC-type proline/glycine betaine transport system, ATPase component [Lactobacillus gasseri 202-4] Length = 319 Score = 39.4 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 23/84 (27%) Query: 66 VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125 + +LVGPSGSGK+ L ++ + ++ T+ +LL+D + +++ + Sbjct: 29 IFVLVGPSGSGKTTLLKMF----------------NRLIEPTKGEILLDDKSIKEYDLRK 72 Query: 126 LFHIINSIHQYDSSLLMTARTFPV 149 L + +L TA FP Sbjct: 73 L-------REKTGYVLQTASLFPN 89 >gi|221102685|ref|XP_002168499.1| PREDICTED: similar to predicted protein [Hydra magnipapillata] Length = 769 Score = 39.4 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLL 119 PS+ V+ GP G GK+ LA +++ ++ S L ++ + + + D Sbjct: 475 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKA 531 Score = 36.7 bits (84), Expect = 2.7, Method: Composition-based stats. Identities = 30/188 (15%), Positives = 70/188 (37%), Gaps = 57/188 (30%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P R ++L GP G+GK+ + + + + ++ + +++ID + Sbjct: 233 PPRGILLYGPPGTGKT---------------NVLKIAFEEAEKNSPSIIFIDEIDSIAPK 277 Query: 123 DT------------QLFHIINSIHQYDSSLLMTARTFPVSW--------------GVCLP 156 QL +++ + Q ++M A P S + +P Sbjct: 278 REKTHGEVERRIVSQLLTLMDGLKQRSHVIIMAATNRPNSIDPALRRFGRFDREVDIGIP 337 Query: 157 DLCSRLKAATVVKIS----LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 D RL+ +++I DD+ + ++ A+ ++ +A+ S Sbjct: 338 DASGRLE---ILRIHTKNMKLDDE---VDLEQIAAETHGYVGSDVASLC------SEAAL 385 Query: 213 EKLVDKMD 220 +++ +KMD Sbjct: 386 QQIREKMD 393 >gi|124023247|ref|YP_001017554.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus str. MIT 9303] gi|123963533|gb|ABM78289.1| FtsH ATP-dependent protease-like protein [Prochlorococcus marinus str. MIT 9303] Length = 638 Score = 39.4 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 44/251 (17%), Positives = 84/251 (33%), Gaps = 55/251 (21%) Query: 30 FSFPRCLGISRDDLL-VHSA---IEQAVRLIDSWPSWPS------RVVILVGPSGSGKSC 79 F+ G+ DD+ V A +E+ V + + S R V+LVGP G+GK+ Sbjct: 170 FAMEAETGVKFDDVAGVSEAKQDLEEVVTFLKKPERFTSVGAQIPRGVLLVGPPGTGKTL 229 Query: 80 LANIWSDKSRSTRFSNIAKSLDSILIDTRKP----------------VLLEDIDLL---- 119 LA + ++ FS + + + +++ID + Sbjct: 230 LAKAIAGEAGVPFFSLSGSEFVEMFVGVGASRVRDLFKRAKENTPCLIFIDEIDAVGRQR 289 Query: 120 -----DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATV- 167 ND QL ++ +++ A P L ++ Sbjct: 290 GAGIGGGNDEREQTLNQLLTEMDGFEGNSGIIIIAATNRPDVLDSAL------MRPGRFD 343 Query: 168 --VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL- 224 V + PD ++ D+++ D L + +R A L + ++ A+ Sbjct: 344 RQVSVDSPDIKGRLAILEVHARDKKLEEDLSLKN-VARRTP-GFTGA-DLANLLNEAAIL 400 Query: 225 -SRGMGITRSL 234 +R SL Sbjct: 401 TARRRKKAISL 411 >gi|111222751|ref|YP_713545.1| hypothetical protein FRAAL3336 [Frankia alni ACN14a] gi|111150283|emb|CAJ61980.1| conserved hypothetical protein [Frankia alni ACN14a] Length = 425 Score = 39.4 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 37/116 (31%), Gaps = 8/116 (6%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFS-------NIAKSLDSILIDTRKPVLLEDI 116 VV+L GP GKS L + + + A ++ + PV +++ Sbjct: 24 EPVVLLQGPRSVGKSTLLRGLAADLGAELIDLDDLASRDAAARDPALFVTGAGPVCIDEY 83 Query: 117 DLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 + + +N + +L T + L RL V +S Sbjct: 84 QHVPIILDAIKAELNRDGRPGRFVL-TGSARHEALPRAAQALTGRLHRLPVYPLSQ 138 >gi|73667298|ref|YP_303314.1| Holliday junction DNA helicase B [Ehrlichia canis str. Jake] gi|97190039|sp|Q3YRD9|RUVB_EHRCJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|72394439|gb|AAZ68716.1| Holliday junction DNA helicase subunit RuvB [Ehrlichia canis str. Jake] Length = 329 Score = 39.4 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 8/73 (10%) Query: 63 PSRVVILVGPSGSGKSCLANIWSD------KSRSTRFSNIAKSLDSIL--IDTRKPVLLE 114 P V+L GP G GK+ LA+I + +S + + A L +IL + + + ++ Sbjct: 50 PMDHVLLYGPPGLGKTTLAHIIAKELKVNFRSTAGPLLSKAGDLAAILTNLQAKDILFID 109 Query: 115 DIDLLDFNDTQLF 127 +I L+ N ++ Sbjct: 110 EIHRLNRNIEEIL 122 >gi|49482941|ref|YP_040165.1| ABC transporter ATP-binding protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257424804|ref|ZP_05601231.1| ABC transporter ATP-binding protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257427472|ref|ZP_05603871.1| ABC transporter ATP-binding protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257430103|ref|ZP_05606487.1| ABC transporter ATP-binding protein [Staphylococcus aureus subsp. aureus 68-397] gi|257432805|ref|ZP_05609165.1| ABC transporter ATP-binding protein [Staphylococcus aureus subsp. aureus E1410] gi|257435709|ref|ZP_05611757.1| ABC transporter ATP-binding protein [Staphylococcus aureus subsp. aureus M876] gi|282903312|ref|ZP_06311203.1| ABC transporter, ATP-binding protein, MsbA family [Staphylococcus aureus subsp. aureus C160] gi|282905092|ref|ZP_06312950.1| ATP-binding cassette subfamily B bacterial [Staphylococcus aureus subsp. aureus Btn1260] gi|282908069|ref|ZP_06315900.1| ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910329|ref|ZP_06318133.1| ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC [Staphylococcus aureus subsp. aureus WBG10049] gi|282913522|ref|ZP_06321311.1| ABC transporter, ATP-binding protein, MsbA family [Staphylococcus aureus subsp. aureus M899] gi|282918475|ref|ZP_06326212.1| ATP-binding cassette, subfamily B protein [Staphylococcus aureus subsp. aureus C427] gi|282923440|ref|ZP_06331120.1| ATP-binding cassette, subfamily B [Staphylococcus aureus subsp. aureus C101] gi|283957514|ref|ZP_06374967.1| ABC transporter, ATP-binding protein, MsbA family [Staphylococcus aureus subsp. aureus A017934/97] gi|293500569|ref|ZP_06666420.1| ATP-binding cassette, subfamily B, bacterial [Staphylococcus aureus subsp. aureus 58-424] gi|293509515|ref|ZP_06668226.1| ABC transporter ATP-binding protein [Staphylococcus aureus subsp. aureus M809] gi|293524101|ref|ZP_06670788.1| ABC transporter, ATP-binding protein, MsbA family [Staphylococcus aureus subsp. aureus M1015] gi|295427261|ref|ZP_06819896.1| ATP-binding cassette-containing protein [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590390|ref|ZP_06949029.1| ABC superfamily ATP binding cassette transporter, ABC protein [Staphylococcus aureus subsp. aureus MN8] gi|49241070|emb|CAG39748.1| ABC transporter ATP-binding protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257272374|gb|EEV04497.1| ABC transporter ATP-binding protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257275665|gb|EEV07138.1| ABC transporter ATP-binding protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257279300|gb|EEV09901.1| ABC transporter ATP-binding protein [Staphylococcus aureus subsp. aureus 68-397] gi|257282220|gb|EEV12355.1| ABC transporter ATP-binding protein [Staphylococcus aureus subsp. aureus E1410] gi|257284900|gb|EEV15019.1| ABC transporter ATP-binding protein [Staphylococcus aureus subsp. aureus M876] gi|282314308|gb|EFB44698.1| ATP-binding cassette, subfamily B [Staphylococcus aureus subsp. aureus C101] gi|282317609|gb|EFB47981.1| ATP-binding cassette, subfamily B protein [Staphylococcus aureus subsp. aureus C427] gi|282322554|gb|EFB52876.1| ABC transporter, ATP-binding protein, MsbA family [Staphylococcus aureus subsp. aureus M899] gi|282325721|gb|EFB56029.1| ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC [Staphylococcus aureus subsp. aureus WBG10049] gi|282327734|gb|EFB58016.1| ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331917|gb|EFB61428.1| ATP-binding cassette subfamily B bacterial [Staphylococcus aureus subsp. aureus Btn1260] gi|282596267|gb|EFC01228.1| ABC transporter, ATP-binding protein, MsbA family [Staphylococcus aureus subsp. aureus C160] gi|283790965|gb|EFC29780.1| ABC transporter, ATP-binding protein, MsbA family [Staphylococcus aureus subsp. aureus A017934/97] gi|290921064|gb|EFD98125.1| ABC transporter, ATP-binding protein, MsbA family [Staphylococcus aureus subsp. aureus M1015] gi|291095574|gb|EFE25835.1| ATP-binding cassette, subfamily B, bacterial [Staphylococcus aureus subsp. aureus 58-424] gi|291467612|gb|EFF10127.1| ABC transporter ATP-binding protein [Staphylococcus aureus subsp. aureus M809] gi|295128649|gb|EFG58280.1| ATP-binding cassette-containing protein [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576689|gb|EFH95404.1| ABC superfamily ATP binding cassette transporter, ABC protein [Staphylococcus aureus subsp. aureus MN8] gi|312438893|gb|ADQ77964.1| MsbA family ABC superfamily ATP binding cassette transporter, ABC protein [Staphylococcus aureus subsp. aureus TCH60] gi|315194300|gb|EFU24692.1| ABC transporter ATP-binding protein [Staphylococcus aureus subsp. aureus CGS00] Length = 557 Score = 39.4 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 16/72 (22%) Query: 66 VVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ 125 + +VGPSGSGKS L I + + + E++D+ + +D Sbjct: 359 KIAIVGPSGSGKSTLLQI----------------MAGLYQLDSGSIRFENMDMFEIDDKD 402 Query: 126 LFHIINSIHQYD 137 F +N + Q Sbjct: 403 KFEALNVLLQSQ 414 >gi|19074903|ref|NP_586409.1| PROTEASOME REGULATORY SUBUNIT YTA6 OF THE AAA FAMILY OF ATPASES [Encephalitozoon cuniculi GB-M1] gi|19069628|emb|CAD26013.1| PROTEASOME REGULATORY SUBUNIT YTA6 OF THE AAA FAMILY OF ATPASES [Encephalitozoon cuniculi GB-M1] Length = 425 Score = 39.4 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 11/67 (16%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P R ++L GP G+GK+ + + + ++T FS A SL S + + ++ Sbjct: 186 PPRGLLLFGPPGTGKTMIGKCIASQCKATFFSISASSLTSKWVGEGEKMV---------- 235 Query: 123 DTQLFHI 129 LFH+ Sbjct: 236 -RALFHL 241 >gi|326433195|gb|EGD78765.1| hypothetical protein PTSG_11780 [Salpingoeca sp. ATCC 50818] Length = 1521 Score = 39.4 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 16/103 (15%), Positives = 34/103 (33%), Gaps = 23/103 (22%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPV--LLED--IDLLDFN 122 ++L+G G+GK+ L + LD + + P+ +E+ D Sbjct: 827 LVLIGMRGAGKTTLGRAAAAYLGYDFID-----LDDLFEEKHGPIPAFIEERGWDEFRQQ 881 Query: 123 DTQLF------HIINSIHQYDSSL--------LMTARTFPVSW 151 + H N++ + L+ P++W Sbjct: 882 EQAALEEALEQHAYNTVVSCGGGVVETPACRELLAGSRLPIAW 924 >gi|322490859|emb|CBZ26123.1| metallo-peptidase, Clan MA(E), Family M41 [Leishmania mexicana MHOM/GT/2001/U1103] Length = 571 Score = 39.4 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 22/60 (36%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +L GP G GK+ LA + ++ + F D + + + E N L Sbjct: 135 ALLTGPPGCGKTMLAKAIAKEAGVSFFYATGSEFDEMFVGVGARRVRELFAAAKANSPAL 194 >gi|332160750|ref|YP_004297327.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318604629|emb|CBY26127.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Yersinia enterocolitica subsp. palearctica Y11] gi|325664980|gb|ADZ41624.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330859949|emb|CBX70278.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia enterocolitica W22703] Length = 423 Score = 39.4 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 52/132 (39%), Gaps = 30/132 (22%) Query: 2 NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVH--SA---IEQAV-RL 55 ++++E+ P ++++ P P + DD ++ A + AV Sbjct: 46 DIIREEIKEVAPHRERSSLPT----------PHEIRRHLDDYVIGQEPAKKVLAVAVYNH 95 Query: 56 IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107 + + ++L+GP+GSGK+ LA + RF ++ ++ T Sbjct: 96 YKRLRNGDTSNGIELGKSNILLIGPTGSGKTLLAETLA------RFLDVPFTMADATTLT 149 Query: 108 RKPVLLEDIDLL 119 + ED++ + Sbjct: 150 EAGYVGEDVENI 161 >gi|311067743|ref|YP_003972666.1| hypothetical protein BATR1942_03905 [Bacillus atrophaeus 1942] gi|310868260|gb|ADP31735.1| hypothetical protein BATR1942_03905 [Bacillus atrophaeus 1942] Length = 245 Score = 39.4 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 50/146 (34%), Gaps = 28/146 (19%) Query: 45 VHSAIEQAVRLIDSWPS---WPSRVVILVGPSGSGKSCLANIWSDK-------------- 87 V A E A ++ + + L+G GSGK+ L +++ Sbjct: 74 VIDAYECAAEFVEHFQDIQSARKNSIALLGQPGSGKTHLLTAAANRLMKTQHVPVVYFPF 133 Query: 88 -SRSTRFSNIAKSLDSIL--IDTRKPVLLEDI--------DLLDFNDTQLFHIINSIHQY 136 T N L++ L I + ++D+ D+ Q++ +IN + Sbjct: 134 VEGFTDLKNDFDLLEAKLSRIKQSGVLFIDDLFKPVNGKPRATDWQIEQMYSVINYRYLN 193 Query: 137 DSSLLMTARTFPVSWGVCLPDLCSRL 162 +L+++ L +R+ Sbjct: 194 HKPILLSSELTVEELVRVDEALGTRI 219 >gi|300120910|emb|CBK21152.2| unnamed protein product [Blastocystis hominis] Length = 625 Score = 39.4 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 39/120 (32%), Gaps = 15/120 (12%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 L G G GKS L + S + ++ ++ I ++ L + N+ Sbjct: 420 AFLFGAHGVGKSSLLRRFLGSSPAGKYLPDQSLKTAVNIVKHGEGAVDSFILTEVNEET- 478 Query: 127 FHIINSIHQYDSSLLMTARTFPVSWGVCLPD-------LCSRLKAATVVKISLPDDDFLE 179 N ++ L + W V PD LCSR T V + D L Sbjct: 479 ---ENQAFEH----LRFCDLACLVWDVTRPDSLHYVMRLCSRFPRGTKVLLVAMKSDLLR 531 >gi|295132462|ref|YP_003583138.1| Holliday junction DNA helicase B [Zunongwangia profunda SM-A87] gi|294980477|gb|ADF50942.1| Holliday junction DNA helicase B [Zunongwangia profunda SM-A87] Length = 340 Score = 39.4 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 21/99 (21%) Query: 38 ISRDDL------------LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85 +S DD V +A ++ L +L GP G GK+ LA+I + Sbjct: 26 LSFDDFAGQEQVLDNLKVFVAAANLRSEAL---------DHTLLHGPPGLGKTTLAHILA 76 Query: 86 DKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDT 124 ++ LD L++ D+L ++ Sbjct: 77 NELGVGLKITSGPVLDKPGDLAGLLTNLDERDILFIDEI 115 >gi|258590861|emb|CBE67156.1| putative insertion sequence IS21 ATP-binding protein [NC10 bacterium 'Dutch sediment'] Length = 256 Score = 39.4 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 56/149 (37%), Gaps = 26/149 (17%) Query: 32 FPRCLGISRDDLLVHSAIEQAVRLIDSWPSW---PSRVVILVGPSGSGKSCLAN----IW 84 P+ + D + + +V W V+ L G +G+GK+ LA + Sbjct: 69 LPKVKTLEDFDFTMAPQVSASVVRTLGTGDWIGRAEPVLFL-GDAGTGKTHLAIALAVVA 127 Query: 85 SDKSRSTRFSNIAKSLDSILIDTR--------------KPVLLEDIDLLDFNDTQ---LF 127 + + RF+ A+ ++ ++ + ++++++ + +T LF Sbjct: 128 CRQRKRVRFTTAAELVNELMEARHQNELSRVLARWMRYEVLVVDEMAYVTMPETAGEVLF 187 Query: 128 HIINSIHQYDSSLLMTARTFPVSWGVCLP 156 +I + +++++T W P Sbjct: 188 QVI-AGRAERAAVIVTTNLPFSEWTTMFP 215 >gi|238764859|ref|ZP_04625800.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia kristensenii ATCC 33638] gi|238696966|gb|EEP89742.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia kristensenii ATCC 33638] Length = 423 Score = 39.4 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 52/132 (39%), Gaps = 30/132 (22%) Query: 2 NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVH--SA---IEQAV-RL 55 ++++E+ P ++++ P P + DD ++ A + AV Sbjct: 46 DIIREEIKEVAPHRERSSLPT----------PHEIRRHLDDYVIGQEPAKKVLAVAVYNH 95 Query: 56 IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107 + + ++L+GP+GSGK+ LA + RF ++ ++ T Sbjct: 96 YKRLRNGDTSNGIELGKSNILLIGPTGSGKTLLAETLA------RFLDVPFTMADATTLT 149 Query: 108 RKPVLLEDIDLL 119 + ED++ + Sbjct: 150 EAGYVGEDVENI 161 >gi|225464698|ref|XP_002277539.1| PREDICTED: hypothetical protein isoform 3 [Vitis vinifera] Length = 730 Score = 39.4 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 21/32 (65%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P R ++L GP G+GK+ LA ++++ ++ + Sbjct: 450 PCRGILLFGPPGTGKTMLAKAIANEAGASFIN 481 >gi|218133571|ref|ZP_03462375.1| hypothetical protein BACPEC_01438 [Bacteroides pectinophilus ATCC 43243] gi|217990946|gb|EEC56952.1| hypothetical protein BACPEC_01438 [Bacteroides pectinophilus ATCC 43243] Length = 332 Score = 39.4 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 73/200 (36%), Gaps = 31/200 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G GK+ LA+I S++ + +++ L + D+L ++ Sbjct: 56 VLLYGPPGLGKTTLASIISNEMGTNLKVTSGPAIEKPGEMAAILNNLNEGDVLFVDEI-- 113 Query: 127 FHIINSIHQY---------DSSLLMTARTFPVSWGVCLPD----------------LCSR 161 H +N + +++ S + LP L R Sbjct: 114 -HRLNRQVEEVLYPAMEDFAIDIVIGKGASARSIRLDLPHFTLVGATTRAGLLTAPLRDR 172 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-D 220 V + + LE++I + + ID++ A + +R + A +++ ++ D Sbjct: 173 F--GVVSHLEFYTTEELERIIRRSAQVLGVEIDEEGAHELARRSRGTPRLANRMLKRVRD 230 Query: 221 NLALSRGMGITRSLAAEVLK 240 + ITR +A L Sbjct: 231 FAQVRYDGRITREVADYALN 250 >gi|146102932|ref|XP_001469447.1| metallo-peptidase, Clan MA(E), Family M41; mitochondrial ATP-dependent zinc metallopeptidase [Leishmania infantum] gi|134073817|emb|CAM72556.1| mitochondrial ATP-dependent zinc metallopeptidase [Leishmania infantum JPCM5] gi|322503637|emb|CBZ38723.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 571 Score = 39.4 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 22/60 (36%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +L GP G GK+ LA + ++ + F D + + + E N L Sbjct: 135 ALLTGPPGCGKTMLAKAIAKEAGVSFFYATGSEFDEMFVGVGARRVRELFAAAKANSPAL 194 >gi|2853003|gb|AAC02215.1| valosin-containing protein homolog [Trypanosoma brucei] gi|261332619|emb|CBH15614.1| Transitional endoplasmic reticulum ATPase,putative [Trypanosoma brucei gambiense DAL972] Length = 780 Score = 39.4 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 61/164 (37%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP GSGK+ +A ++++ + F N+ + + Sbjct: 226 PPRGILMYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESEGNLRNAFVESEKN 285 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + ++M A P + Sbjct: 286 APAIIFIDEIDSIAPKREKAQGEVEKRIVSQLLTLMDGLKGRSQVIVMAATNRPNAID-- 343 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + + I +PD+ +++ + + +D + Sbjct: 344 -PALR-RFGRFDREIDIGVPDEIGRLEIL--RIHTKNMKLDPNV 383 >gi|123443341|ref|YP_001007315.1| ATP-dependent protease ATP-binding subunit ClpX [Yersinia enterocolitica subsp. enterocolitica 8081] gi|6225174|sp|O33873|CLPX_YEREN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|166215219|sp|A1JNN1|CLPX_YERE8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|2580495|gb|AAC45783.1| ClpX [Yersinia enterocolitica] gi|122090302|emb|CAL13168.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 423 Score = 39.4 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 52/132 (39%), Gaps = 30/132 (22%) Query: 2 NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVH--SA---IEQAV-RL 55 ++++E+ P ++++ P P + DD ++ A + AV Sbjct: 46 DIIREEIKEVAPHRERSSLPT----------PHEIRRHLDDYVIGQEPAKKVLAVAVYNH 95 Query: 56 IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107 + + ++L+GP+GSGK+ LA + RF ++ ++ T Sbjct: 96 YKRLRNGDTSNGIELGKSNILLIGPTGSGKTLLAETLA------RFLDVPFTMADATTLT 149 Query: 108 RKPVLLEDIDLL 119 + ED++ + Sbjct: 150 EAGYVGEDVENI 161 >gi|238751007|ref|ZP_04612503.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia rohdei ATCC 43380] gi|238783608|ref|ZP_04627629.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia bercovieri ATCC 43970] gi|238795541|ref|ZP_04639056.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia mollaretii ATCC 43969] gi|238710697|gb|EEQ02919.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia rohdei ATCC 43380] gi|238715486|gb|EEQ07477.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia bercovieri ATCC 43970] gi|238720660|gb|EEQ12461.1| ATP-dependent Clp protease ATP-binding subunit clpX [Yersinia mollaretii ATCC 43969] Length = 423 Score = 39.4 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 52/132 (39%), Gaps = 30/132 (22%) Query: 2 NLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVH--SA---IEQAV-RL 55 ++++E+ P ++++ P P + DD ++ A + AV Sbjct: 46 DIIREEIKEVAPHRERSSLPT----------PHEIRRHLDDYVIGQEPAKKVLAVAVYNH 95 Query: 56 IDSWPSWPSRV--------VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT 107 + + ++L+GP+GSGK+ LA + RF ++ ++ T Sbjct: 96 YKRLRNGDTSNGIELGKSNILLIGPTGSGKTLLAETLA------RFLDVPFTMADATTLT 149 Query: 108 RKPVLLEDIDLL 119 + ED++ + Sbjct: 150 EAGYVGEDVENI 161 >gi|332712424|ref|ZP_08432351.1| membrane protease FtsH catalytic subunit [Lyngbya majuscula 3L] gi|332348898|gb|EGJ28511.1| membrane protease FtsH catalytic subunit [Lyngbya majuscula 3L] Length = 510 Score = 39.4 bits (91), Expect = 0.48, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 58/168 (34%), Gaps = 48/168 (28%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ FS + + Sbjct: 91 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCL 150 Query: 111 VLLEDIDLLDFN------------DTQLFHII--------N-----SIHQYDSSLLMTAR 145 + +++ID + + L ++ N + +L TA Sbjct: 151 IFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADVLDTAL 210 Query: 146 TFPVSWG----VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADR 189 P + V PDL R+K V+++ D ++ +++ A R Sbjct: 211 LRPGRFDRQVMVDPPDLKGRIK---VLEVHARDKKLASEISIEVIARR 255 >gi|293603799|ref|ZP_06686215.1| replication-associated recombination protein A [Achromobacter piechaudii ATCC 43553] gi|292817797|gb|EFF76862.1| replication-associated recombination protein A [Achromobacter piechaudii ATCC 43553] Length = 446 Score = 39.4 bits (91), Expect = 0.48, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 6/74 (8%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +I GP G GK+ LA + +D + + A + + D R+ V + + T L Sbjct: 55 MIFWGPPGVGKTTLARLMADGFDAQFIAISA--VLGGVKDIREAVTVAQVAQGQGRRTIL 112 Query: 127 F----HIINSIHQY 136 F H N Q Sbjct: 113 FVDEVHRFNKAQQD 126 >gi|295688117|ref|YP_003591810.1| Holliday junction DNA helicase Ruvb [Caulobacter segnis ATCC 21756] gi|295430020|gb|ADG09192.1| Holliday junction DNA helicase RuvB [Caulobacter segnis ATCC 21756] Length = 346 Score = 39.4 bits (91), Expect = 0.48, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 62/201 (30%), Gaps = 36/201 (17%) Query: 67 VILVGPSGSGKSCLANI--------WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL 118 V+L GP G GK+ LA I + S + ++ + +++I Sbjct: 56 VLLFGPPGLGKTTLAQIVARELGVNFRATSGPVLNKPGDLAAILTNLEANDVLFIDEIHR 115 Query: 119 LDFNDTQLF------HIINSIHQYDSSL-----------LMTARTFPVSWGVCLPDLCSR 161 L N ++ H+++ + S L+ A T L D Sbjct: 116 LSSNVEEILYPAMEDHVLDLVIGEGPSARSIRIDLAPFTLVAATTRAGMLATPLRD---- 171 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKM-- 219 + +++ L V+ + A I +R + A +L+ ++ Sbjct: 172 -RFGIPIRLEFYTPAELRHVLQHAARKMGAPLSDDGADEIAKRARGTPRVAGRLLRRVRD 230 Query: 220 ----DNLALSRGMGITRSLAA 236 D + +LA Sbjct: 231 FATADGATVIDRKAAGLALAR 251 >gi|295662841|ref|XP_002791974.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01] gi|226279626|gb|EEH35192.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01] Length = 961 Score = 39.4 bits (91), Expect = 0.48, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 17/30 (56%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 ++L GP G+GK+ LA + +S +T Sbjct: 690 PGLLLYGPPGTGKTMLAKAVARQSGATVLE 719 >gi|255659637|ref|ZP_05405046.1| cell division protein FtsH [Mitsuokella multacida DSM 20544] gi|260848199|gb|EEX68206.1| cell division protein FtsH [Mitsuokella multacida DSM 20544] Length = 684 Score = 39.4 bits (91), Expect = 0.48, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 57/188 (30%), Gaps = 47/188 (25%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ FS + + Sbjct: 200 VLLVGPPGTGKTMLAKAVAGEANVPFFSIAGSEFVEMFVGMGASKVRDLFKQAKEKAPCI 259 Query: 111 VLLEDIDLLD--------FNDT------QLFHIINSIHQYDSSLLMTARTFPVSW----- 151 V +++ID + ND QL ++ +++ A P S Sbjct: 260 VFIDEIDAIGQKRTGAAMGNDEREQTLNQLLTEMDGFEGNTGVIILAATNRPDSLDPALL 319 Query: 152 ---------GVCLPDLCSR--LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAY 200 V LPDL R + K+ L DD + + + Sbjct: 320 RPGRFDRRVPVELPDLKGREDILKVHAKKVRLADDVNFHTIARMAAGASGAEL-ANIINE 378 Query: 201 IVQRMERS 208 R RS Sbjct: 379 GALRAVRS 386 >gi|224145173|ref|XP_002325552.1| white-brown-complex ABC transporter family [Populus trichocarpa] gi|222862427|gb|EEE99933.1| white-brown-complex ABC transporter family [Populus trichocarpa] Length = 648 Score = 39.4 bits (91), Expect = 0.48, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 6/71 (8%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDT----RKPVLLEDI-- 116 P ++ ++GPSGSGKS L N + + ++ F+ + + V +DI Sbjct: 81 PGEILAILGPSGSGKSTLLNAIAGRIQANGFTGTVLTNNRKPAKQIMKRIGFVTQDDILY 140 Query: 117 DLLDFNDTQLF 127 L +T +F Sbjct: 141 PHLTVRETLVF 151 >gi|224120532|ref|XP_002318353.1| predicted protein [Populus trichocarpa] gi|222859026|gb|EEE96573.1| predicted protein [Populus trichocarpa] Length = 746 Score = 39.4 bits (91), Expect = 0.48, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 20/32 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P R ++L GP G+GK+ LA + ++ ++ + Sbjct: 549 PCRGILLFGPPGTGKTMLAKAIAKEAGASFIN 580 >gi|167997942|ref|XP_001751677.1| predicted protein [Physcomitrella patens subsp. patens] gi|162696775|gb|EDQ83112.1| predicted protein [Physcomitrella patens subsp. patens] Length = 1081 Score = 39.4 bits (91), Expect = 0.48, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL 112 +V++L GP G GK+ LA++ + + R I S D + + +L Sbjct: 464 EKVLLLCGPPGLGKTTLAHV-AARHCGYRVVEINASDDRVATTLQGKIL 511 >gi|169806672|ref|XP_001828080.1| 19S-PA700 proteasome regulatory particle subunit Rpt4p-S10b [Enterocytozoon bieneusi H348] gi|161779208|gb|EDQ31232.1| 19S-PA700 proteasome regulatory particle subunit Rpt4p-S10b [Enterocytozoon bieneusi H348] Length = 388 Score = 39.4 bits (91), Expect = 0.48, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 61/171 (35%), Gaps = 41/171 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V+L GP G+GK+ LA I + T +A SL I ++ Sbjct: 166 PPKGVLLYGPPGTGKTLLAKIVASTMDVTFIKVVASSLIEKYIGESAKMVREMFAYARLK 225 Query: 113 ------LEDIDLLDFN------------DTQLFHIINSIHQ----YDSSLLMTARTFPVS 150 L++ID + L ++N + ++M A P Sbjct: 226 APCIIFLDEIDAIGGARTNESNSSDREVQRTLMELLNQLDGFSDLDGVKVIM-ATNRPDI 284 Query: 151 WGVCLPDLC-SRLKAATVVKISLPDDDFLEKVIV---KMFADRQIFIDKKL 197 L L RL ++I LP++ ++++ K QI +D + Sbjct: 285 LDSAL--LRPGRLD--RKIEIPLPNEHGRKEILKIHSKNMNQDQIDLDTIV 331 >gi|164429437|ref|XP_957491.2| hypothetical protein NCU04414 [Neurospora crassa OR74A] gi|157073478|gb|EAA28255.2| conserved hypothetical protein [Neurospora crassa OR74A] Length = 460 Score = 39.4 bits (91), Expect = 0.48, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 20/45 (44%) Query: 70 VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 GP G+GK+ LA + ++ +T L + I ++ + Sbjct: 247 YGPPGTGKTLLARACAAQTDATFLKLAGPQLVQMFIGDGAKLVRD 291 >gi|154499593|ref|ZP_02037631.1| hypothetical protein BACCAP_03249 [Bacteroides capillosus ATCC 29799] gi|150271671|gb|EDM98915.1| hypothetical protein BACCAP_03249 [Bacteroides capillosus ATCC 29799] Length = 625 Score = 39.4 bits (91), Expect = 0.48, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 47/142 (33%), Gaps = 45/142 (31%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + +++ FS + + Sbjct: 219 VLLVGPPGTGKTLLAKAVAGEAKVPFFSISGSEFVEMFVGMGAAKVRDLFKQANEKAPCI 278 Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW---- 151 V +++ID + ND QL ++ +L+ A P S Sbjct: 279 VFIDEIDAIGKKRDGAGVGGNDEREQTLNQLLAEMDGFDGRKGVVLLAATNRPESLDPAL 338 Query: 152 ----------GVCLPDLCSRLK 163 V LPDL R+ Sbjct: 339 LRPGRFDRRVRVELPDLQGRIA 360 >gi|148358606|ref|YP_001249813.1| ATPase N2B [Legionella pneumophila str. Corby] gi|148280379|gb|ABQ54467.1| ATPase N2B (nucleotide (GTP) binding protein) [Legionella pneumophila str. Corby] Length = 360 Score = 39.4 bits (91), Expect = 0.48, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 27/122 (22%) Query: 57 DSWPSW----PSRVVILVGPSGSGKSCLA-----------------NIWSDKSRS--TRF 93 DSW W P + + + GP G GK+ L + + + + R Sbjct: 41 DSWFPWRKKHPIKGLYIYGPVGVGKTYLVDLFYQHIDEEKKARFHFHHFMQQIDAQLRRL 100 Query: 94 SNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQ----LFHIINSIHQYDSSLLMTARTFPV 149 L I + K + L D +D L ++ ++H Y L++++ T P Sbjct: 101 QGKKNPLQYIAKEMAKSIRLLCFDEFLVHDVAYAMILAELLQALHHYGVVLVISSNTHPD 160 Query: 150 SW 151 Sbjct: 161 EL 162 >gi|116747588|ref|YP_844275.1| IstB ATP binding domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116750258|ref|YP_846945.1| IstB ATP binding domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116696652|gb|ABK15840.1| IstB domain protein ATP-binding protein [Syntrophobacter fumaroxidans MPOB] gi|116699322|gb|ABK18510.1| IstB domain protein ATP-binding protein [Syntrophobacter fumaroxidans MPOB] Length = 259 Score = 39.4 bits (91), Expect = 0.48, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 54/149 (36%), Gaps = 34/149 (22%) Query: 32 FPRCLGISRDDLLVHSA------IE-QAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIW 84 FP + D + E A R I + + VIL+GP G GK+ LA Sbjct: 68 FPFVKTLESFDFAFQPSIDKKRINELAACRFIANGEN-----VILLGPPGVGKTHLAVAL 122 Query: 85 SDKSRSTRFS-------NIAKSLDSILIDTR-----------KPVLLEDIDLLDFNDTQ- 125 K+ + + + SL + R K +++++I + + Sbjct: 123 GIKAVTEGYRTHFTQAMPLVASLTKAYAENRIEERLKFYCQPKLLIIDEIGYIPIDRHGA 182 Query: 126 --LFHIINSIHQYDSSLLMTARTFPVSWG 152 F +I+ ++ + L++T+ W Sbjct: 183 HLFFQLISRRYERGA-LIVTSNRSFGQWN 210 >gi|219668203|ref|YP_002458638.1| ABC transporter [Desulfitobacterium hafniense DCB-2] gi|219538463|gb|ACL20202.1| ABC transporter related [Desulfitobacterium hafniense DCB-2] Length = 572 Score = 39.4 bits (91), Expect = 0.48, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 22/87 (25%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLED--IDLLD 120 P + ++GP+GSGKS +A + L R ++L+D I L Sbjct: 356 PGGSLAIIGPTGSGKSTIAWL----------------LLRFYDADRGRIMLDDYPIQELG 399 Query: 121 FNDTQLFHIINSIHQYDSSLLMTARTF 147 ++ + N LL + Sbjct: 400 ADEIR----HNIAIVPQKPLLFSGTVA 422 >gi|310801152|gb|EFQ36045.1| 26S proteasome subunit P45 family protein [Glomerella graminicola M1.001] Length = 460 Score = 39.4 bits (91), Expect = 0.48, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 20/45 (44%) Query: 70 VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 GP G+GK+ LA + ++ +T L + I ++ + Sbjct: 247 YGPPGTGKTLLARACAAQTDATFLKLAGPQLVQMFIGDGAKLVRD 291 >gi|312068505|ref|XP_003137245.1| proteasome 26S subunit [Loa loa] gi|307767590|gb|EFO26824.1| proteasome 26S subunit [Loa loa] Length = 397 Score = 39.4 bits (91), Expect = 0.48, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 26/75 (34%), Gaps = 14/75 (18%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122 P + +L GP G+GK+ LA + + ++ ++ I ++ E Sbjct: 174 PPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIRE-------- 225 Query: 123 DTQLFHIINSIHQYD 137 + N + Sbjct: 226 ------MFNYARDHQ 234 >gi|297538757|ref|YP_003674526.1| AAA ATPase central domain-containing protein [Methylotenera sp. 301] gi|297258104|gb|ADI29949.1| AAA ATPase central domain protein [Methylotenera sp. 301] Length = 444 Score = 39.4 bits (91), Expect = 0.48, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 9/85 (10%) Query: 58 SWPSWPSRVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSILIDTRKPVLLED 115 ++ S +IL GP G GK+ LA + ++ + + S + + I + L+ Sbjct: 42 AFQSGKLPSMILWGPPGVGKTTLARLIANTAEADFIPISAVLSGIKDIREAVERAELIL- 100 Query: 116 IDLLDFNDTQLF----HIINSIHQY 136 T LF H N Q Sbjct: 101 --QQHGRKTILFVDEVHRFNKGQQD 123 >gi|256827177|ref|YP_003151136.1| RecA protein [Cryptobacterium curtum DSM 15641] gi|256583320|gb|ACU94454.1| RecA protein [Cryptobacterium curtum DSM 15641] Length = 352 Score = 39.4 bits (91), Expect = 0.48, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 24/60 (40%) Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFND 123 R++ + GP SGK+ LA ++++ + L L D+D L + Sbjct: 61 GRIIEIYGPESSGKTTLALHILAEAQALGGIAAFIDAEHALDPVYAARLGVDVDDLLISQ 120 >gi|225216858|gb|ACN85156.1| 26S protease regulatory subunit S10B [Oryza nivara] Length = 401 Score = 39.4 bits (91), Expect = 0.48, Method: Composition-based stats. Identities = 31/196 (15%), Positives = 61/196 (31%), Gaps = 48/196 (24%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V+L GP G+GK+ LA + + ++ ++ I ++ Sbjct: 174 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFSYAREH 233 Query: 113 ------LEDIDLLDFN------------DTQLFHIINS---IHQYDSSLLMTARTFPVSW 151 +++ID + L ++N + ++ A P Sbjct: 234 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDELGKVKMIMATNRPDVL 293 Query: 152 GVCLPDLC-SRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L RL ++I LP++ +V+ A I + E Sbjct: 294 DPAL--LRPGRLD--RKIEIPLPNEQSRMEVLKIHAAG------------IAKHGEIDYE 337 Query: 211 FAEKLVDKMDNLALSR 226 KL + + L Sbjct: 338 AVVKLAEGFNGADLRN 353 >gi|225464696|ref|XP_002277556.1| PREDICTED: hypothetical protein isoform 4 [Vitis vinifera] Length = 783 Score = 39.4 bits (91), Expect = 0.48, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 21/32 (65%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P R ++L GP G+GK+ LA ++++ ++ + Sbjct: 506 PCRGILLFGPPGTGKTMLAKAIANEAGASFIN 537 >gi|218245487|ref|YP_002370858.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801] gi|257058522|ref|YP_003136410.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802] gi|218165965|gb|ACK64702.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8801] gi|256588688|gb|ACU99574.1| ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 8802] Length = 628 Score = 39.4 bits (91), Expect = 0.48, Method: Composition-based stats. Identities = 35/215 (16%), Positives = 68/215 (31%), Gaps = 47/215 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 V+LVGP G+GK+ LA + ++ FS + + Sbjct: 209 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCL 268 Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + ND QL ++ +++ A P L Sbjct: 269 IFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEGNTGIIIIAATNRPDVLDSAL 328 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVF 211 ++ V + PD +++ R +D + I +R Sbjct: 329 ------MRPGRFDRQVIVDAPDFKGRIEILEVHA--RNKKLDPDVSIEAIARRTP-GFSG 379 Query: 212 AEKLVDKMDNLALSRGMGITRSLAAEVLKETQQCD 246 A L + ++ A+ R A +L+ D Sbjct: 380 A-DLANLLNEAAILTARR--RKPAITLLEIDDAVD 411 >gi|162149486|ref|YP_001603947.1| two-component system, response regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161788063|emb|CAP57667.1| putative two-component system, response regulator [Gluconacetobacter diazotrophicus PAl 5] Length = 446 Score = 39.4 bits (91), Expect = 0.48, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 70/176 (39%), Gaps = 30/176 (17%) Query: 67 VILVGPSGSGKSCLA----NIWSDKSRSTRFSNIAKSLDSILI-----DTRKPVLLEDI- 116 V+L GP+G GK+ LA + + ++ + D++ + D R +L+E+I Sbjct: 199 VLLTGPAGVGKTALARRIHRLSAQRAGRLLVLDPRLGEDTVAVRLAGADARDTLLVEEIG 258 Query: 117 DLLDFNDTQLFHIINSIHQYDS-SLLMTARTFPVSWGVCL-PDLCSRLKAATVVKISLP- 173 D +L + LL TAR + + PDL RL VV I+LP Sbjct: 259 DWSPALQDRLLA---RVQAGGGARLLATAREGGAALRASVMPDLLCRLD---VVTIALPP 312 Query: 174 ------DDDFLEKVIVKMFADRQI----FIDKKLAAYIVQR-MERSLVFAEKLVDK 218 + L + +++FA R + + + R ++ + +++ Sbjct: 313 LAARGEEIAVLARHFLRLFALRHGVADRTLSPEAEEALAARPWPDNVRALRQAMER 368 >gi|225428386|ref|XP_002283544.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|297744432|emb|CBI37694.3| unnamed protein product [Vitis vinifera] Length = 399 Score = 39.4 bits (91), Expect = 0.48, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + + ++ ++ I ++ E Sbjct: 172 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIRE 223 >gi|156848053|ref|XP_001646909.1| hypothetical protein Kpol_2000p15 [Vanderwaltozyma polyspora DSM 70294] gi|156117591|gb|EDO19051.1| hypothetical protein Kpol_2000p15 [Vanderwaltozyma polyspora DSM 70294] Length = 823 Score = 39.4 bits (91), Expect = 0.48, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 48/121 (39%), Gaps = 28/121 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R V++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 246 PPRGVLMYGPPGTGKTLMARAVANETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEKN 305 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + +++ID + QL +++ + + +++ A P S Sbjct: 306 APAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNVVVIAATNRPNSIDPA 365 Query: 155 L 155 L Sbjct: 366 L 366 Score = 36.7 bits (84), Expect = 2.7, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 16/74 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 PS+ V+ GP G+GK+ LA + + + SNI D Sbjct: 519 PSKGVLFYGPPGTGKTLLAKAVATEVSANFISVKGPELLSMWYGESESNIRDIFDKARAA 578 Query: 107 TRKPVLLEDIDLLD 120 V L+++D + Sbjct: 579 APTVVFLDELDSIA 592 >gi|152981347|ref|YP_001354491.1| transposase [Janthinobacterium sp. Marseille] gi|151281424|gb|ABR89834.1| transposase [Janthinobacterium sp. Marseille] Length = 270 Score = 39.4 bits (91), Expect = 0.48, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 44/107 (41%), Gaps = 22/107 (20%) Query: 67 VILVGPSGSGKSCLA-----NIWSDKSR------STRFSNIAKSLDSILID-------TR 108 VI++GP G GK+ LA R + + + K+ +D T Sbjct: 111 VIILGPPGVGKTHLAVSLGLKAIEAGYRVLFTSAANLIAQLTKAHAEGKLDDKLKVFTTP 170 Query: 109 KPVLLEDIDLLDFNDTQ---LFHIINSIHQYDSSLLMTARTFPVSWG 152 + +++++I L + F +I+ ++ +++T+ +WG Sbjct: 171 RLLVIDEIGYLPIDQQGANLFFQLISRRYERG-PMILTSNQSFGAWG 216 >gi|157877019|ref|XP_001686849.1| metallo-peptidase, Clan MA(E), Family M41; mitochondrial ATP-dependent zinc metallopeptidase gi|68129924|emb|CAJ09230.1| metallo-peptidase, Clan MA(E), Family M41 [Leishmania major strain Friedlin] Length = 571 Score = 39.4 bits (91), Expect = 0.48, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 22/60 (36%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 +L GP G GK+ LA + ++ + F D + + + E N L Sbjct: 135 ALLTGPPGCGKTMLAKAIAKEAGVSFFYATGSEFDEMFVGVGARRVRELFAAAKANSPAL 194 >gi|268557298|ref|XP_002636638.1| C. briggsae CBR-RPT-1 protein [Caenorhabditis briggsae] gi|187021089|emb|CAP39671.1| CBR-RPT-1 protein [Caenorhabditis briggsae AF16] Length = 435 Score = 39.4 bits (91), Expect = 0.48, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 43/144 (29%), Gaps = 45/144 (31%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK------------- 109 P + V+L GP G+GK+ A ++++ + I L + Sbjct: 210 PPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 269 Query: 110 ---PVLLEDIDLLDFN------------DTQLFHIINSIH----QYDSSLLMTARTF--- 147 + ++ID + + +IN + + + +LM Sbjct: 270 KACLIFFDEIDAVGGARFDDGQGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 329 Query: 148 ------PVSW----GVCLPDLCSR 161 P LPDL R Sbjct: 330 DPALMRPGRLDRKVEFALPDLVGR 353 >gi|327439662|dbj|BAK16027.1| ATPase [Solibacillus silvestris StLB046] Length = 426 Score = 39.4 bits (91), Expect = 0.49, Method: Composition-based stats. Identities = 36/211 (17%), Positives = 78/211 (36%), Gaps = 37/211 (17%) Query: 53 VRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSR---------STRFSNIAKSLDSI 103 R+I+ ++L GP G GK+ +AN + S+ +I + + Sbjct: 32 FRMIEK---GHVPSMLLYGPPGVGKTSIANAIAGSSKIPFFALNATHAGKKDIEQIVMDA 88 Query: 104 LIDTRKPVLLEDIDLLDF--NDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSR 161 + + + L++I + DT L H+ N S+++ T + P + SR Sbjct: 89 RMSGKVLLFLDEIHRFNKLQQDTLLPHVEN------GSIVLIGATTENPFHDVNPAIRSR 142 Query: 162 LKAATVVKISLPDDDFLEKVIVKMFAD--RQI-----FIDKKLAAYIVQRMERSLVFAEK 214 ++++ D + +++ + AD R + I ++ I A Sbjct: 143 --CGEILQLERLTGDDIIQLLNQALADKERGLGHLEIDITEQQIEKIANASNGDARKALT 200 Query: 215 LVDKMDNLALSRGMGITR-------SLAAEV 238 L++ + + G+T +LA + Sbjct: 201 LLESVYYAS-DEKDGVTIINDNAIDALAKRI 230 >gi|313835711|gb|EFS73425.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL037PA2] gi|314928383|gb|EFS92214.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL044PA1] gi|314970189|gb|EFT14287.1| ATP-dependent metallopeptidase HflB [Propionibacterium acnes HL037PA3] gi|328908037|gb|EGG27796.1| putative cell division protein FtsH [Propionibacterium sp. P08] Length = 719 Score = 39.4 bits (91), Expect = 0.49, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 51/165 (30%), Gaps = 47/165 (28%) Query: 67 VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110 V+L GP G+GK+ LA + ++ S + + Sbjct: 203 VLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKEAAPAI 262 Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + D + L + ++ + +L+ A P L Sbjct: 263 IFIDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDVHGGVILIAATNRPDVLDPAL 322 Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVK 184 PDL RLK V P D+ L + + Sbjct: 323 LRPGRFDRQIAVEAPDLDGRLKILQVHAHGKPMADNVDLASIARR 367 >gi|313897534|ref|ZP_07831076.1| cell division protease FtsH [Clostridium sp. HGF2] gi|312957486|gb|EFR39112.1| cell division protease FtsH [Clostridium sp. HGF2] Length = 617 Score = 39.4 bits (91), Expect = 0.49, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 44/140 (31%), Gaps = 45/140 (32%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 +LVGP G+GK+ LA + ++ FS + + Sbjct: 204 ALLVGPPGTGKTLLAKAVAGEANVPFFSISGSEFVEMFVGRGAARVRDLFKQAREKAPCI 263 Query: 111 VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSW---- 151 V +++ID + ND QL ++ +L+ A P S Sbjct: 264 VFIDEIDTIGKKRDGAGVGGNDEREQTLNQLLAEMDGFDGSTGVILLAATNRPESLDQAL 323 Query: 152 ----------GVCLPDLCSR 161 V LPDL R Sbjct: 324 LRPGRFDRRIPVDLPDLAGR 343 >gi|315055597|ref|XP_003177173.1| 26S protease regulatory subunit 6A [Arthroderma gypseum CBS 118893] gi|311339019|gb|EFQ98221.1| 26S protease regulatory subunit 6A [Arthroderma gypseum CBS 118893] Length = 461 Score = 39.4 bits (91), Expect = 0.49, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 15/84 (17%) Query: 45 VHSAIEQAVRLIDS--WP------------SWPSRVVILVGPSGSGKSCLANIWSDKSRS 90 V +Q L+++ WP P ++ GP G+GK+ LA + ++ + Sbjct: 209 VGGLNKQIEELLEAIVWPMKEADRFKKIGIKAPKGALM-YGPPGTGKTLLARACAAQTEA 267 Query: 91 TRFSNIAKSLDSILIDTRKPVLLE 114 T L + I ++ + Sbjct: 268 TFLKLAGPQLVQMFIGDGAKLVRD 291 >gi|302535218|ref|ZP_07287560.1| cell division protein FtsH [Streptomyces sp. C] gi|302444113|gb|EFL15929.1| cell division protein FtsH [Streptomyces sp. C] Length = 677 Score = 39.4 bits (91), Expect = 0.49, Method: Composition-based stats. Identities = 35/204 (17%), Positives = 65/204 (31%), Gaps = 49/204 (24%) Query: 67 VILVGPSGSGKSCLANIWSDKSR----------------STRFSNIAKSLDSILIDTRKP 110 V+L GP G+GK+ LA + ++ S + + + Sbjct: 209 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKANAPAI 268 Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 V +++ID + D + L + ++ +L+ A P L Sbjct: 269 VFVDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDVKGGVILIAATNRPDILDPAL 328 Query: 156 --------------PDLCSRLKAATVVKISLP--DDDFLEKVIVKMFADRQIFIDKKL-- 197 PD+ RL+ V + P D L V + + L Sbjct: 329 LRPGRFDRQIAVDRPDMQGRLEILKVHQKGKPVAPDVDLSAVARRTPGFTGADLSNVLNE 388 Query: 198 AAYIVQRMERSLVFAEKLVDKMDN 221 AA + R ++ L+ L + +D Sbjct: 389 AALLTARSDKKLIDNHMLDEAIDR 412 >gi|289617504|emb|CBI55739.1| unnamed protein product [Sordaria macrospora] Length = 460 Score = 39.4 bits (91), Expect = 0.49, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 20/45 (44%) Query: 70 VGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 GP G+GK+ LA + ++ +T L + I ++ + Sbjct: 247 YGPPGTGKTLLARACAAQTDATFLKLAGPQLVQMFIGDGAKLVRD 291 >gi|240279441|gb|EER42946.1| ABC transporter [Ajellomyces capsulatus H143] gi|325092570|gb|EGC45880.1| ABC transporter [Ajellomyces capsulatus H88] Length = 622 Score = 39.4 bits (91), Expect = 0.49, Method: Composition-based stats. Identities = 13/28 (46%), Positives = 20/28 (71%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRS 90 P VV+L+GPSGSGK+ L N+ + + + Sbjct: 54 PGEVVVLMGPSGSGKTTLLNVLAHRDSA 81 >gi|261189835|ref|XP_002621328.1| cell division cycle protein 48 [Ajellomyces dermatitidis SLH14081] gi|239591564|gb|EEQ74145.1| cell division cycle protein 48 [Ajellomyces dermatitidis SLH14081] gi|239612906|gb|EEQ89893.1| cell division control protein Cdc48 [Ajellomyces dermatitidis ER-3] gi|327352078|gb|EGE80935.1| cell division cycle protein 48 [Ajellomyces dermatitidis ATCC 18188] Length = 822 Score = 39.4 bits (91), Expect = 0.49, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 64/164 (39%), Gaps = 35/164 (21%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R +++ GP G+GK+ +A ++++ + F SN+ K+ + + Sbjct: 254 PPRGILMFGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKN 313 Query: 107 TRKPVLLEDIDLLDFNDT------------QLFHIINSIHQYDSSLLMTARTFPVSWGVC 154 + + +++ID + QL +++ + + ++M A P S Sbjct: 314 SPAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNS---V 370 Query: 155 LPDLCSRL-KAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKL 197 P L R + V I +PD +++ + + + + Sbjct: 371 DPALR-RFGRFDREVDIGIPDPTGRLEILQ--IHTKNMKLGDDV 411 >gi|254569058|ref|XP_002491639.1| ATPase of the CDC48/PAS1/SEC18 (AAA) family, forms a hexameric complex [Pichia pastoris GS115] gi|238031436|emb|CAY69359.1| ATPase of the CDC48/PAS1/SEC18 (AAA) family, forms a hexameric complex [Pichia pastoris GS115] gi|328351856|emb|CCA38255.1| ATPase family gene 2 protein [Pichia pastoris CBS 7435] Length = 763 Score = 39.4 bits (91), Expect = 0.49, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 41/122 (33%), Gaps = 29/122 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRF----------------SNIAKSLDSILID 106 P R ++L GP G+GK+ L +++ + S I + Sbjct: 263 PPRGILLHGPPGTGKTMLLRAVANEENAHVLTINGPSVISKYLGETESTIRDMFREAELY 322 Query: 107 TRKPVLLEDIDLLD----FNDTQ---------LFHIINSIHQYDSSLLMTARTFPVSWGV 153 + +++ID L +D L +++ + +L+ A P + Sbjct: 323 QPSIIFIDEIDALAPSRNSDDAGETESRIVASLLTLMDGMGNAGRVVLVGATNRPNAIDQ 382 Query: 154 CL 155 L Sbjct: 383 AL 384 >gi|255071513|ref|XP_002499431.1| proteasomal ATPase [Micromonas sp. RCC299] gi|226514693|gb|ACO60689.1| proteasomal ATPase [Micromonas sp. RCC299] Length = 405 Score = 39.4 bits (91), Expect = 0.49, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + + ++ ++ I ++ E Sbjct: 177 PPKGVLLYGPPGTGKTLLAKAIASNIDANFLKVVSSAIVDKYIGESARLIRE 228 >gi|225562633|gb|EEH10912.1| ABC transporter [Ajellomyces capsulatus G186AR] Length = 638 Score = 39.4 bits (91), Expect = 0.49, Method: Composition-based stats. Identities = 13/28 (46%), Positives = 20/28 (71%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRS 90 P VV+L+GPSGSGK+ L N+ + + + Sbjct: 135 PGEVVVLMGPSGSGKTTLLNVLAHRDSA 162 >gi|255538750|ref|XP_002510440.1| 26S protease regulatory subunit S10b, putative [Ricinus communis] gi|223551141|gb|EEF52627.1| 26S protease regulatory subunit S10b, putative [Ricinus communis] Length = 399 Score = 39.4 bits (91), Expect = 0.49, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + + ++ ++ I ++ E Sbjct: 172 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIRE 223 >gi|224085722|ref|XP_002307679.1| predicted protein [Populus trichocarpa] gi|222857128|gb|EEE94675.1| predicted protein [Populus trichocarpa] Length = 402 Score = 39.4 bits (91), Expect = 0.49, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + + ++ ++ I ++ E Sbjct: 175 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIRE 226 >gi|254451539|ref|ZP_05064976.1| cell division protein FtsH [Octadecabacter antarcticus 238] gi|198265945|gb|EDY90215.1| cell division protein FtsH [Octadecabacter antarcticus 238] Length = 639 Score = 39.4 bits (91), Expect = 0.49, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 70/205 (34%), Gaps = 46/205 (22%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 +LVGP G+GK+ LA + ++ F+ + + Sbjct: 190 ALLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCI 249 Query: 111 VLLEDIDLLDF----------NDTQLFHIINSIH------QYDSSLLMTARTFPVSWGVC 154 + +++ID + ++ + +N + + + +++ A T V Sbjct: 250 IFIDEIDAVGRARGVGMGGGNDERE--QTLNQLLVEMDGFEANEGVIIIAAT--NRKDVL 305 Query: 155 LPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVF 211 P L L+ V + PD EK++ R+ + + I+ R Sbjct: 306 DPAL---LRPGRFDRQVTVGNPDIKGREKILGVHA--RKTPLGPDVDLRIIARGSPGFSG 360 Query: 212 AEKLVDKMDNLALSRGMGITRSLAA 236 A L + ++ AL+ + R A Sbjct: 361 A-DLANLVNEAALTAAR-VGRRFVA 383 >gi|190345884|gb|EDK37849.2| hypothetical protein PGUG_01947 [Meyerozyma guilliermondii ATCC 6260] Length = 768 Score = 39.4 bits (91), Expect = 0.49, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 57/153 (37%), Gaps = 32/153 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS------------NIAKSLDSILIDTR-- 108 P R V+L GP G+GK+ L +++ + + +L I + R Sbjct: 269 PPRGVLLHGPPGTGKTMLLRSVANEVDAHVLAVNGPSIVSKYLGETENALREIFSEARQY 328 Query: 109 --KPVLLEDIDLLDFND-------------TQLFHIINSIHQYDSSLLMTARTFPVSWGV 153 + +++ID L N L +++ + + +++ A P S Sbjct: 329 QPSIIFMDEIDSLAPNRNSDDSGETESRVVATLLTMMDGMGESGRVVVIGATNRPNSLD- 387 Query: 154 CLPDLCSRLKAATVVKISLPDDDFLEKVIVKMF 186 P L + V+I +PD + ++ K F Sbjct: 388 --PALRRPGRFDQEVEIGIPDVNARLDILSKQF 418 >gi|186492938|ref|NP_001117544.1| AAA-type ATPase family protein [Arabidopsis thaliana] gi|332196077|gb|AEE34198.1| P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana] Length = 827 Score = 39.4 bits (91), Expect = 0.49, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 20/32 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P R ++L GP G+GK+ LA + ++ ++ + Sbjct: 552 PCRGILLFGPPGTGKTMLAKAIAKEAGASFIN 583 >gi|154279596|ref|XP_001540611.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] gi|150412554|gb|EDN07941.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] Length = 550 Score = 39.4 bits (91), Expect = 0.49, Method: Composition-based stats. Identities = 13/28 (46%), Positives = 20/28 (71%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRS 90 P VV+L+GPSGSGK+ L N+ + + + Sbjct: 54 PGEVVVLMGPSGSGKTTLLNVLAHRDSA 81 >gi|148239452|ref|YP_001224839.1| cell division protein FtsH [Synechococcus sp. WH 7803] gi|147847991|emb|CAK23542.1| Cell division protein FtsH [Synechococcus sp. WH 7803] Length = 620 Score = 39.4 bits (91), Expect = 0.49, Method: Composition-based stats. Identities = 37/210 (17%), Positives = 70/210 (33%), Gaps = 43/210 (20%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP-------------- 110 R V+LVGP G+GK+ LA + ++ FS A + + Sbjct: 192 RGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLAASEFVELFVGVGASRVRDLFRKAKEKSP 251 Query: 111 --VLLEDIDLL---------DFNDT------QLFHIINSIHQYDSSLLMTARTFPVSWGV 153 V +++ID + ND QL ++ +L+ A Sbjct: 252 CIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFADNSGVILLAATNRADVLDT 311 Query: 154 CLPDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L ++ + + LPD E ++ R + + LA + +R Sbjct: 312 AL------MRPGRFDRRIAVGLPDRKGREAILSVHARTRPLAEEVSLADW-ARRTP-GFS 363 Query: 211 FAEKLVDKMDNLALSRGMGITRSLAAEVLK 240 A L + ++ A+ + +L L+ Sbjct: 364 GA-DLANLLNEAAILTARHQSTTLGNRELE 392 >gi|225458173|ref|XP_002281107.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|147800891|emb|CAN75568.1| hypothetical protein VITISV_010255 [Vitis vinifera] gi|302142551|emb|CBI19754.3| unnamed protein product [Vitis vinifera] Length = 398 Score = 39.4 bits (91), Expect = 0.49, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ LA + + ++ ++ I ++ E Sbjct: 171 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIRE 222 >gi|118586319|ref|ZP_01543772.1| ATPase, AAA family [Oenococcus oeni ATCC BAA-1163] gi|118433245|gb|EAV39958.1| ATPase, AAA family [Oenococcus oeni ATCC BAA-1163] Length = 467 Score = 39.4 bits (91), Expect = 0.49, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 64/176 (36%), Gaps = 27/176 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRS--TRFSNIAKSLDSIL-----------IDTRKPVLL 113 +I GP G GK+ LA I + +S++ FS + I R V + Sbjct: 77 MIFWGPPGVGKTTLAEIIAHRSKAKFITFSAATSGIKEIRKIMKDAENNRQFGVRTIVFI 136 Query: 114 EDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLP 173 ++I + F + S +L+ A T S+ + L SR K + ++ Sbjct: 137 DEIHRFNKAQQDSFLPY---VEKGSIILIGATTENPSFEINSA-LLSRSKVFVLRQLKSS 192 Query: 174 DDDFLEKVIVKM---FADRQIFIDKKLAAYIVQRMERSLV--FAEKLVDKMDNLAL 224 D L + +K FA ++I I + I A ++ ++ L Sbjct: 193 DIVKLLENALKNPHGFAKQKISISSRTLQLIA-----DFANGDARTALNTLEMAVL 243 >gi|50424825|ref|XP_461002.1| DEHA2F14740p [Debaryomyces hansenii CBS767] gi|49656671|emb|CAG89370.1| DEHA2F14740p [Debaryomyces hansenii] Length = 415 Score = 39.4 bits (91), Expect = 0.49, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 22/48 (45%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 V+L GP G+GK+ LA + + + A ++ I ++ E Sbjct: 196 VLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIRE 243 >gi|18407974|ref|NP_564824.1| AAA-type ATPase family protein [Arabidopsis thaliana] gi|15810167|gb|AAL06985.1| At1g64110/F22C12_22 [Arabidopsis thaliana] gi|30102500|gb|AAP21168.1| At1g64110/F22C12_22 [Arabidopsis thaliana] gi|332196076|gb|AEE34197.1| P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana] Length = 824 Score = 39.4 bits (91), Expect = 0.49, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 20/32 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P R ++L GP G+GK+ LA + ++ ++ + Sbjct: 549 PCRGILLFGPPGTGKTMLAKAIAKEAGASFIN 580 >gi|30696968|ref|NP_849842.1| AAA-type ATPase family protein [Arabidopsis thaliana] gi|332196075|gb|AEE34196.1| P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana] Length = 829 Score = 39.4 bits (91), Expect = 0.49, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 20/32 (62%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 P R ++L GP G+GK+ LA + ++ ++ + Sbjct: 554 PCRGILLFGPPGTGKTMLAKAIAKEAGASFIN 585 >gi|326574344|gb|EGE24287.1| recombination factor protein RarA [Moraxella catarrhalis CO72] Length = 412 Score = 39.4 bits (91), Expect = 0.49, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 62/174 (35%), Gaps = 21/174 (12%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRS--TRFSNIA---------KSLDSILIDTRKPVLL 113 +IL G +G GK+ LA + +D S ++ D L V + Sbjct: 39 PSLILHGSAGIGKTTLAMLLADAVGRPFRPLSAVSSGVKELREVLRSDDGLFHEPPVVFV 98 Query: 114 EDIDLLD-FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISL 172 ++I + L + L+ A T S+ V L SR V K+ Sbjct: 99 DEIHRFNKAQQDALL----QAVETGEITLIGATTENPSFSVNNA-LLSR---CQVYKLEP 150 Query: 173 PDDDFLEKVIVKMFADRQIFIDKKL-AAYIVQRMERSLVFAEKLVDKMDNLALS 225 DD + +IV+ + K + + ++ S + ++ ++ +A + Sbjct: 151 LSDDEIYALIVRAIRQDALLKTKDIQINNLAALIDLSQGDGRRALNLLELVAAA 204 >gi|307212720|gb|EFN88396.1| ATPase WRNIP1 [Harpegnathos saltator] Length = 562 Score = 39.4 bits (91), Expect = 0.49, Method: Composition-based stats. Identities = 10/23 (43%), Positives = 15/23 (65%) Query: 65 RVVILVGPSGSGKSCLANIWSDK 87 +IL GP G GK+ LAN+ + + Sbjct: 153 PNMILWGPPGCGKTSLANVIAHR 175 >gi|254714274|ref|ZP_05176085.1| recombination factor protein RarA [Brucella ceti M644/93/1] gi|254717711|ref|ZP_05179522.1| recombination factor protein RarA [Brucella ceti M13/05/1] gi|261219553|ref|ZP_05933834.1| recombination factor protein RarA [Brucella ceti M13/05/1] gi|261322048|ref|ZP_05961245.1| recombination factor protein RarA [Brucella ceti M644/93/1] gi|260924642|gb|EEX91210.1| recombination factor protein RarA [Brucella ceti M13/05/1] gi|261294738|gb|EEX98234.1| recombination factor protein RarA [Brucella ceti M644/93/1] Length = 437 Score = 39.4 bits (91), Expect = 0.49, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 59/181 (32%), Gaps = 28/181 (15%) Query: 60 PSWPSRVVILVGPSGSGKSCLANIWSDKSR--STRFSNIAKSLDSILIDTRKPVLLEDID 117 S ++ GP G+GK+ +A + + ++ + S I + + Sbjct: 49 ASGSLGSMVFWGPPGTGKTTVARLLAGETDLAFEQISAIFSGVADLKRVFEAA----RAR 104 Query: 118 LLDFNDTQLF----HIINSIH--------QYDSSLLM--TARTFPVSWGVCLPDLCSRLK 163 + T LF H N + + +L+ T L SR Sbjct: 105 RMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVILIGATTENPSFELNAA---LLSR-- 159 Query: 164 AATVVKISLPDDDFLEKVIVKMFADRQ--IFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 A V+ D + + ++ + + +D + A +++ + A L +++ Sbjct: 160 -ARVLTFHPHDSESIATLLKRAEEQEGQALPLDDEARASLIRMADGDGRAALTLAEEVWR 218 Query: 222 L 222 Sbjct: 219 A 219 >gi|291457503|ref|ZP_06596893.1| proteasome-activating nucleotidase [Bifidobacterium breve DSM 20213] gi|291381338|gb|EFE88856.1| proteasome-activating nucleotidase [Bifidobacterium breve DSM 20213] Length = 401 Score = 39.4 bits (91), Expect = 0.49, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 22/95 (23%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL----------------DSILID 106 P + VI G G+GK+ LA I ++ + + + ++ + D Sbjct: 186 PIKGVIFTGAPGTGKTHLARIIANVADAQFYLVSGPTIVSKYVGDSEETLRMIFAAAQAD 245 Query: 107 TRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLL 141 R + ++ID + + N + L+ Sbjct: 246 KRAIIFFDEIDSIASSRE------NDTNGVGKRLV 274 >gi|254419693|ref|ZP_05033417.1| ATP-dependent metallopeptidase HflB subfamily [Brevundimonas sp. BAL3] gi|196185870|gb|EDX80846.1| ATP-dependent metallopeptidase HflB subfamily [Brevundimonas sp. BAL3] Length = 654 Score = 39.4 bits (91), Expect = 0.49, Method: Composition-based stats. Identities = 30/197 (15%), Positives = 63/197 (31%), Gaps = 43/197 (21%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKP---------------- 110 +LVGP G+GK+ LA + ++ FS + + Sbjct: 200 ALLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDMFEQAKKNAPCI 259 Query: 111 VLLEDIDLL------------DFNDTQLFHI---INSIHQYDSSLLMTARTFPVSWGVCL 155 + +++ID + D + L + ++ + +L+ A P L Sbjct: 260 IFIDEIDAVGRHRGAGLGGGNDEREQTLNQLLVEMDGFEANEGIILIAATNRPDVLDPAL 319 Query: 156 PDLCSRLKAATV---VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFA 212 L+ V + PD E+++ D + + + + R A Sbjct: 320 ------LRPGRFDRQVVVPNPDVSGRERILRVHMKD--VPLAADVNVKTIARGTPGFSGA 371 Query: 213 EKLVDKMDNLALSRGMG 229 L + ++ AL+ Sbjct: 372 -DLANLVNEAALTAARK 387 >gi|154686914|ref|YP_001422075.1| Holliday junction DNA helicase RuvB [Bacillus amyloliquefaciens FZB42] gi|166231462|sp|A7Z768|RUVB_BACA2 RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|154352765|gb|ABS74844.1| RuvB [Bacillus amyloliquefaciens FZB42] Length = 334 Score = 39.4 bits (91), Expect = 0.49, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 3/70 (4%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFNDTQL 126 V+L GP G GK+ LA+I +++ + +++ LE D+L ++ Sbjct: 56 VLLYGPPGLGKTTLASIVANEMGVEMRTTSGPAIERPGDLAAILTALEPGDVLFIDEI-- 113 Query: 127 FHIINSIHQY 136 H +N + Sbjct: 114 -HRLNRSIEE 122 >gi|134056206|emb|CAK96381.1| unnamed protein product [Aspergillus niger] Length = 1049 Score = 39.4 bits (91), Expect = 0.49, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 17/30 (56%) Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFS 94 ++L GP G+GK+ LA + +S +T Sbjct: 776 PGLLLYGPPGTGKTLLAKAVARESGATVLE 805 >gi|114800414|ref|YP_758881.1| Holliday junction DNA helicase RuvB [Hyphomonas neptunium ATCC 15444] gi|123028468|sp|Q0C5W2|RUVB_HYPNA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvB gi|114740588|gb|ABI78713.1| Holliday junction DNA helicase RuvB [Hyphomonas neptunium ATCC 15444] Length = 344 Score = 39.4 bits (91), Expect = 0.49, Method: Composition-based stats. Identities = 40/203 (19%), Positives = 77/203 (37%), Gaps = 32/203 (15%) Query: 67 VILVGPSGSGKSCLANI--------WSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDL 118 V+L GP G GK+ LA I + S + ++ + +++I Sbjct: 57 VLLFGPPGLGKTTLAQILAREMGVGFRATSGPVIAKAGDLAAILTNLEPNDVLFIDEIHR 116 Query: 119 L-DFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLC--------SR--LKAATV 167 L + L+ + D +L + P + V L DL +R L A + Sbjct: 117 LPAIVEEILYPAM-----EDYALDLVIGEGPAARSVRL-DLAPFTLVGATTRAGLLATPL 170 Query: 168 -------VKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMD 220 V++ + + L ++++ + I + A I R + A +L+ ++ Sbjct: 171 RDRFGIPVRLEFYEPEELGRIVMAAARKLGVPITEDGAVEISARARGTPRIALRLLRRVR 230 Query: 221 NLALSRGMGITRSLAAEVLKETQ 243 + A + G I R+ AA LK + Sbjct: 231 DFAEAEGADINRASAARALKRLE 253 >gi|54022420|ref|YP_116662.1| putative ATPase [Nocardia farcinica IFM 10152] gi|54013928|dbj|BAD55298.1| putative ATPase [Nocardia farcinica IFM 10152] Length = 322 Score = 39.4 bits (91), Expect = 0.49, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 39/106 (36%), Gaps = 24/106 (22%) Query: 67 VILVGPSGSGKS----CLANIWSDKSRSTRFSNIAKSL-----DSILIDTRKPVLLEDID 117 V L G G GK+ L ++R F L D+ +D L+ D + Sbjct: 41 VYLHGRPGRGKTMLMDHLLAATRTRTRRWHFHEFFALLHRARQDAGSVDGALTALIGDAE 100 Query: 118 LLDFNDTQLFH------------IINSIHQYDSSLLMTARTFPVSW 151 L+ F++ FH +++++ L++T+ P Sbjct: 101 LVCFDE---FHADDIGDAMLMARLLDALFARRVPLVVTSNQRPEQL 143 >gi|312090391|ref|XP_003146598.1| 26S protease regulatory subunit 6A [Loa loa] gi|307758239|gb|EFO17473.1| 26S protease regulatory subunit 6A [Loa loa] Length = 440 Score = 39.4 bits (91), Expect = 0.49, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 64/183 (34%), Gaps = 38/183 (20%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL---------- 112 P + V+L GP G+GK+ +A + +++ST L + I ++ Sbjct: 220 PPKGVLLYGPPGTGKTMMARAVAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 279 Query: 113 ------LEDIDLL---------DFN---DTQLFHIINS---IHQYDSSLLMTARTFPVSW 151 ++++D + + + ++N D ++ A Sbjct: 280 APAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNDDIKVIAATNRVDVL 339 Query: 152 GVCLPDLCS-RLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLV 210 L L S RL +++ P +D +++ R++ + K + + R Sbjct: 340 DPAL--LRSGRLD--RKIELPSPTEDARARIMQ--IHSRKMNVHKDVNFEELARCTDDFN 393 Query: 211 FAE 213 A+ Sbjct: 394 GAQ 396 >gi|227510161|ref|ZP_03940210.1| crossover junction endodeoxyribonuclease [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190366|gb|EEI70433.1| crossover junction endodeoxyribonuclease [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 424 Score = 39.4 bits (91), Expect = 0.49, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 55/131 (41%), Gaps = 16/131 (12%) Query: 67 VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKS--------LDSILIDTRKPVLLEDID 117 +IL GP G+GK+ +A+ + ++ + R N A + + +LL++I Sbjct: 42 MILYGPPGTGKTSIASAIAGSTKYAFRVLNAATDTKKDLQVVAEEAKMSGTVVLLLDEIH 101 Query: 118 LLDFNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDF 177 LD F + + + + +L+ A T + P + SR + ++ Sbjct: 102 RLDKTKQD-FLL--PLLEKGAIILIGATTENPYININ-PAIRSR---TQIFEVHPLSPKD 154 Query: 178 LEKVIVKMFAD 188 +++ +++ D Sbjct: 155 IKQAVLRALKD 165 >gi|293337100|ref|NP_001168382.1| hypothetical protein LOC100382151 [Zea mays] gi|223947901|gb|ACN28034.1| unknown [Zea mays] Length = 710 Score = 39.4 bits (91), Expect = 0.49, Method: Composition-based stats. Identities = 33/190 (17%), Positives = 66/190 (34%), Gaps = 38/190 (20%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRK----------------P 110 V+LVGP G+GK+ LA + ++ FS + + + Sbjct: 259 VLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFAAAKKRSPCI 318 Query: 111 VLLEDIDLLDFND------------TQLFHIINSIHQYDSSLLMTARTFPVSWGVCL--P 156 + +++ID + + QL ++ Q + +++ A FP S L P Sbjct: 319 IFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRP 378 Query: 157 DLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLV 216 R + + PD + +++ + I + I+ R A L Sbjct: 379 ---GRFD--RHIVVPNPDVEGRRQILESHMSK--ILKGDDVDLMIIARGTPGFSGA-DLA 430 Query: 217 DKMDNLALSR 226 + ++ AL Sbjct: 431 NLVNVAALKA 440 >gi|156368983|ref|XP_001627970.1| predicted protein [Nematostella vectensis] gi|156214934|gb|EDO35907.1| predicted protein [Nematostella vectensis] Length = 442 Score = 39.4 bits (91), Expect = 0.49, Method: Composition-based stats. Identities = 13/37 (35%), Positives = 24/37 (64%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS 99 P R ++L GP G+GKS LA + ++ ++ F +++ S Sbjct: 164 PWRGILLYGPPGTGKSYLAKAVATEANNSTFISVSSS 200 >gi|156087018|ref|XP_001610916.1| 26S protease regulatory subunit 7 [Babesia bovis T2Bo] gi|154798169|gb|EDO07348.1| 26S protease regulatory subunit 7, putative [Babesia bovis] Length = 425 Score = 39.4 bits (91), Expect = 0.49, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 24/52 (46%) Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLE 114 P + V+L GP G+GK+ A ++++ + I L + ++ E Sbjct: 200 PPKGVLLYGPPGTGKTLTARAVANRTDACFICVIGSELVQKYVGEGARLVRE 251 >gi|81361324|gb|ABB71500.1| chromosomal replication initiator protein [Wolbachia pipientis] gi|81361328|gb|ABB71502.1| chromosomal replication initiator protein [Wolbachia pipientis] gi|81361330|gb|ABB71503.1| chromosomal replication initiator protein [Wolbachia pipientis] gi|81361332|gb|ABB71504.1| chromosomal replication initiator protein [Wolbachia pipientis] gi|81361334|gb|ABB71505.1| chromosomal replication initiator protein [Wolbachia pipientis] gi|81361336|gb|ABB71506.1| chromosomal replication initiator protein [Wolbachia pipientis] gi|81361338|gb|ABB71507.1| chromosomal replication initiator protein [Wolbachia pipientis] gi|81361340|gb|ABB71508.1| chromosomal replication initiator protein [Wolbachia pipientis] gi|81361342|gb|ABB71509.1| chromosomal replication initiator protein [Wolbachia pipientis] gi|81361344|gb|ABB71510.1| chromosomal replication initiator protein [Wolbachia pipientis] gi|81361346|gb|ABB71511.1| chromosomal replication initiator protein [Wolbachia pipientis] gi|81361348|gb|ABB71512.1| chromosomal replication initiator protein [Wolbachia pipientis] Length = 134 Score = 39.4 bits (91), Expect = 0.49, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 34/78 (43%), Gaps = 1/78 (1%) Query: 162 LKAATVVKISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDN 221 L V I+ + ++ +++ K + ++ + ++ ++ E ++K+ + Sbjct: 1 LGWGLVADINETTFELRLGILQAKVEQMNMYVPKDVLEFLARNIKSNIRELEGALNKVTH 60 Query: 222 LALSRGMGITRSLAAEVL 239 +L G +T A+E L Sbjct: 61 TSLI-GRSMTVESASETL 77 >gi|115511394|dbj|BAF34303.1| putative transcriptional regulator [Pseudonocardia sp. TY-7] Length = 591 Score = 39.4 bits (91), Expect = 0.49, Method: Composition-based stats. Identities = 35/219 (15%), Positives = 64/219 (29%), Gaps = 45/219 (20%) Query: 44 LVHSA----IEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKS 99 +V S+ A L ++L G G GK+ LA + RFS + Sbjct: 326 VVGSSPVWRNRVAEAL---SAFGSDGGLLLTGEHGIGKTHLAKALHRRLAPGRFSTLLDM 382 Query: 100 LDSILIDTRKPVLLEDIDLLDFNDTQLFHI----INS----------IHQYDSSLLMTAR 145 D + D D L+ + L H+ N + + + A Sbjct: 383 RDPATVLPSHLGEPSD-DGLEPSTLILAHLDEVPWNRRREVSRWLDGVRAERGLVRVAAT 441 Query: 146 TFPVSWG----------VCLPDLCSRLKAATVVKISLPDDDFLEKVIVKMFADRQIFIDK 195 V LP L R+ ++ + ++ A R++ Sbjct: 442 CSSAQLPEDMSHHFGAEVRLPVLRERVSDI---------EELAVHLTERIPAARRLRCAD 492 Query: 196 KLAAYIVQ-RMERSLVFAEKLVDKMDNLALSRGMGITRS 233 + + + R ++ D + ALS + R Sbjct: 493 ETLRILARGRWPGNVAELR---DCLRRAALSCDGEVIRP 528 >gi|86132693|ref|ZP_01051285.1| cell division ATP-binding protein FtsE [Dokdonia donghaensis MED134] gi|85816647|gb|EAQ37833.1| cell division ATP-binding protein FtsE [Dokdonia donghaensis MED134] Length = 227 Score = 39.4 bits (91), Expect = 0.49, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 9/52 (17%) Query: 27 QLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKS 78 Q R++L++ I+ P V L+G +GSGKS Sbjct: 3 QPVLQLSHAAIYQRENLILSEVNVT----IE-----PGDFVYLIGKTGSGKS 45 >gi|325915378|ref|ZP_08177695.1| Recombination protein MgsA [Xanthomonas vesicatoria ATCC 35937] gi|325538425|gb|EGD10104.1| Recombination protein MgsA [Xanthomonas vesicatoria ATCC 35937] Length = 457 Score = 39.4 bits (91), Expect = 0.50, Method: Composition-based stats. Identities = 40/200 (20%), Positives = 65/200 (32%), Gaps = 31/200 (15%) Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD-FNDTQ 125 +IL GP G GK+ LA + + + + F I+ L + + VL E T Sbjct: 62 MILWGPPGCGKTTLALLLAHYADAE-FKAISAVLSGLPDVRQ--VLAEAAQRFASGRRTV 118 Query: 126 LF----HIINSIHQ-------YDSSLLM---TARTFPVSWGVCLPDLCSRLKAATVVKIS 171 LF H N Q ++L T L SR + + +S Sbjct: 119 LFVDEVHRFNKAQQDAFLPHIERGTILFVGATTENPSFELNSA---LLSRCRVHVLESVS 175 Query: 172 LPD--DDFLEKVIVKMFADRQI-----FIDKKLAAYIVQRMERSLVFAEKLVDKMDNLAL 224 D D + +R + + I + + A L++ LA Sbjct: 176 PQDIVDALQRAL---HDPERGLGQETIQVSDASLLEIASA