RPSBLAST alignment for GI: 254780567 and conserved domain: TIGR03420
>gnl|CDD|163254 TIGR03420, DnaA_homol_Hda, DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. Length = 226
Score = 72.6 bits (179), Expect = 8e-14
Identities = 48/189 (25%), Positives = 77/189 (40%), Gaps = 14/189 (7%)
Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVL----------LE 114
R + L G SGSGKS L + S I L + L VL L+
Sbjct: 39 RFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPL-AELAQADPEVLEGLEQADLVCLD 97
Query: 115 DIDLLDFNDT---QLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKIS 171
D++ + LFH+ N + + LL+ R P + LPDL +RL V ++
Sbjct: 98 DVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLP 157
Query: 172 LPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGIT 231
D+ + A R + + ++A Y+++ R + L+D +D +L+ IT
Sbjct: 158 PLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDALDRASLAAKRKIT 217
Query: 232 RSLAAEVLK 240
EVL
Sbjct: 218 IPFVKEVLA 226