BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780567|ref|YP_003064980.1| hypothetical protein
CLIBASIA_02270 [Candidatus Liberibacter asiaticus str. psy62]
(246 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780567|ref|YP_003064980.1| hypothetical protein CLIBASIA_02270 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 246
Score = 501 bits (1289), Expect = e-144, Method: Compositional matrix adjust.
Identities = 246/246 (100%), Positives = 246/246 (100%)
Query: 1 MNLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWP 60
MNLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWP
Sbjct: 1 MNLMKEDYSFFVPDKQKNDQPKNKEEQLFFSFPRCLGISRDDLLVHSAIEQAVRLIDSWP 60
Query: 61 SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120
SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD
Sbjct: 61 SWPSRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSLDSILIDTRKPVLLEDIDLLD 120
Query: 121 FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK
Sbjct: 121 FNDTQLFHIINSIHQYDSSLLMTARTFPVSWGVCLPDLCSRLKAATVVKISLPDDDFLEK 180
Query: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK
Sbjct: 181 VIVKMFADRQIFIDKKLAAYIVQRMERSLVFAEKLVDKMDNLALSRGMGITRSLAAEVLK 240
Query: 241 ETQQCD 246
ETQQCD
Sbjct: 241 ETQQCD 246
>gi|254781060|ref|YP_003065473.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 249
Score = 32.0 bits (71), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 63 PSRVVILVGPSGSGKSCLANIWS 85
PS VV ++GP+GSGKS L+ + S
Sbjct: 28 PSEVVAIMGPNGSGKSTLSYLLS 50
>gi|254780718|ref|YP_003065131.1| putative high-affinity zinc uptake system ATP-binding component
of ABC transporter protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 240
Score = 31.6 bits (70), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 63 PSRVVILVGPSGSGKSCLANIWSDKSRST 91
P+ +V L+GP+GSGKS +A + + + T
Sbjct: 35 PNEIVTLIGPNGSGKSTIAKLITGIIKPT 63
>gi|254780552|ref|YP_003064965.1| Holliday junction DNA helicase RuvB [Candidatus Liberibacter
asiaticus str. psy62]
Length = 334
Score = 29.6 bits (65), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 67 VILVGPSGSGKSCLANIWSDKS----RSTRFSNIAKSLDSILIDTRKPVLLEDIDLLDFN 122
V+ VGP G GK+ LA + + + RST IAK+ D + T LED D+L +
Sbjct: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAGDLAALLTN----LEDRDVLFID 112
Query: 123 DTQLFHII 130
+ II
Sbjct: 113 EIHRLSII 120
>gi|254780559|ref|YP_003064972.1| thiamine transporter ATP-binding subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 234
Score = 28.5 bits (62), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 65 RVVILVGPSGSGKSCLANIWSDKSRSTRFS 94
R+VIL GPSG+GKS L ++ + TR S
Sbjct: 27 RIVIL-GPSGAGKSTLLSLMAGFKYPTRGS 55
>gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 596
Score = 28.5 bits (62), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 64 SRVVILVGPSGSGKSCLANI 83
++ LVGPSGSGKS + N+
Sbjct: 379 GKMTALVGPSGSGKSTIINL 398
>gi|254780173|ref|YP_003064586.1| ABC transporter related protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 257
Score = 27.7 bits (60), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 11/14 (78%), Positives = 12/14 (85%)
Query: 67 VILVGPSGSGKSCL 80
VI+ GPSGSGKS L
Sbjct: 46 VIIAGPSGSGKSTL 59
>gi|254781123|ref|YP_003065536.1| putative ABC transporter, ATP-binding protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 610
Score = 26.6 bits (57), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 67 VILVGPSGSGKSCLANIWSDKSR-STRFSNIAKSLDSILIDTRKPVLLEDID 117
+ +VGP+G+GK+ L + + K + F + +L ID ++ EDID
Sbjct: 313 IGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKR----EDID 360
Score = 25.0 bits (53), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 63 PSRVVILVGPSGSGKSCLANI 83
P + LVG +GSGKS L I
Sbjct: 30 PKERICLVGCNGSGKSTLLKI 50
>gi|254780271|ref|YP_003064684.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
Liberibacter asiaticus str. psy62]
Length = 424
Score = 25.8 bits (55), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 7/42 (16%)
Query: 44 LVHSAIEQAVRLIDSWPSWPSRVVILVGPSGSGKSCLANIWS 85
L HS+ V L S ++LVGP+G GK+ LA +
Sbjct: 100 LAHSSKSSNVELAKSN-------ILLVGPTGCGKTYLAQTLA 134
>gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62]
Length = 647
Score = 25.8 bits (55), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS 94
V+LVGP G+GK+ LA + ++ F+
Sbjct: 184 VLLVGPPGTGKTLLARAVAGEANVPFFT 211
>gi|254780273|ref|YP_003064686.1| putative ABC transporter ATP-binding protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 539
Score = 25.8 bits (55), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 63 PSRVVILVGPSGSGKSCL 80
P +V ++GP+G+GK+ L
Sbjct: 342 PGGIVGVIGPNGAGKTTL 359
Score = 23.9 bits (50), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 62 WPSRVVILVGPSGSGKSCLANI 83
+P + ++GP+G+GKS + I
Sbjct: 30 YPDAKIGILGPNGAGKSTILRI 51
>gi|254780871|ref|YP_003065284.1| lipoprotein-releasing system ATP-binding protein lolD [Candidatus
Liberibacter asiaticus str. psy62]
Length = 227
Score = 25.4 bits (54), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 64 SRVVILVGPSGSGKSCLANI 83
+V LV PSG+GKS + +I
Sbjct: 36 GEIVALVSPSGTGKSTILHI 55
>gi|254781193|ref|YP_003065606.1| putative DNA polymerase from bacteriophage origin [Candidatus
Liberibacter asiaticus str. psy62]
Length = 675
Score = 25.0 bits (53), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/53 (22%), Positives = 25/53 (47%)
Query: 95 NIAKSLDSILIDTRKPVLLEDIDLLDFNDTQLFHIINSIHQYDSSLLMTARTF 147
N K+ I++ ++ E D +FN + L+H++ S + L + A +
Sbjct: 616 NATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGY 668
>gi|254780744|ref|YP_003065157.1| ABC transporter nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 262
Score = 25.0 bits (53), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 63 PSRVVILVGPSGSGKSCL 80
P +V L+GP+G+GK+
Sbjct: 50 PGEIVGLLGPNGAGKTTF 67
>gi|254780184|ref|YP_003064597.1| excinuclease ABC subunit A [Candidatus Liberibacter asiaticus str.
psy62]
Length = 959
Score = 25.0 bits (53), Expect = 1.3, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 11/84 (13%)
Query: 64 SRVVILVGPSGSGKSCLA--NIWSDKSR---------STRFSNIAKSLDSILIDTRKPVL 112
++++++ G SGSGKS LA I ++ R + +F K D ID P +
Sbjct: 27 NKLIVMTGVSGSGKSSLAFDTIHAEGQRRYVESLSTYARQFLGTIKKPDVEQIDGLSPTI 86
Query: 113 LEDIDLLDFNDTQLFHIINSIHQY 136
+ N I IH Y
Sbjct: 87 SIEQKNTSHNPRSTVGTITEIHDY 110
>gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 597
Score = 24.6 bits (52), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 63 PSRVVILVGPSGSGKSCLANI 83
PS+ L+G SG GKS +A +
Sbjct: 382 PSKKTALIGESGVGKSTVAKL 402
>gi|255764460|ref|YP_003064605.2| recombinase A [Candidatus Liberibacter asiaticus str. psy62]
Length = 363
Score = 24.6 bits (52), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 56 IDSWPSWPSRVVILVGPSGSGKSCLA---NIWSDKSRST-RFSNIAKSLDSI 103
I +P R+V + GP SGK+ LA S K+ T F + +LDSI
Sbjct: 61 IGGFP--KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
>gi|254780829|ref|YP_003065242.1| ATP-dependent protease ATP-binding subunit [Candidatus
Liberibacter asiaticus str. psy62]
Length = 437
Score = 24.3 bits (51), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 7/15 (46%), Positives = 13/15 (86%)
Query: 67 VILVGPSGSGKSCLA 81
++LVGP+G GK+ ++
Sbjct: 56 ILLVGPTGVGKTAIS 70
>gi|254780810|ref|YP_003065223.1| transcription termination factor Rho [Candidatus Liberibacter
asiaticus str. psy62]
Length = 423
Score = 23.9 bits (50), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 64 SRVVILVGPSGSGKSCLANIWSDKSRSTRFSNIAKSL 100
SRV+ L+ P G G+ L ++ NIA S+
Sbjct: 162 SRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSI 198
>gi|254780968|ref|YP_003065381.1| hypothetical protein CLIBASIA_04345 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 106
Score = 23.9 bits (50), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 14/49 (28%)
Query: 33 PRC------------LGISRD--DLLVHSAIEQAVRLIDSWPSWPSRVV 67
PRC LG+S D+L A+ Q+++ +WP+ P V
Sbjct: 29 PRCGFSGKVVQVLDSLGVSYKGIDVLADDALRQSIKEYSNWPTIPQLYV 77
>gi|254780704|ref|YP_003065117.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 254
Score = 23.9 bits (50), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 66 VVILVGPSGSGKS 78
V L+GPSG GKS
Sbjct: 34 VTALIGPSGCGKS 46
>gi|254780454|ref|YP_003064867.1| DNA polymerase III subunit beta [Candidatus Liberibacter asiaticus
str. psy62]
Length = 385
Score = 23.9 bits (50), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 1 MNLMKEDYSFFVPDKQKNDQPKNKEEQLFFSF 32
+N+ D +F++ +++ P KEE+ +SF
Sbjct: 99 VNISHGDSNFYLQSFPESEFPSTKEEEYVYSF 130
>gi|254780596|ref|YP_003065009.1| ABC transporter nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 438
Score = 23.5 bits (49), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 64 SRVVILVGPSGSGKSCLANI 83
+V L+G SGSGKS L I
Sbjct: 43 GEIVGLLGRSGSGKSTLLRI 62
>gi|254781009|ref|YP_003065422.1| hypothetical protein CLIBASIA_04555 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 750
Score = 22.7 bits (47), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 22/35 (62%)
Query: 169 KISLPDDDFLEKVIVKMFADRQIFIDKKLAAYIVQ 203
+++L + + K I K+ + Q+F D++L Y++Q
Sbjct: 135 EVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQ 169
>gi|254780193|ref|YP_003064606.1| lipid A ABC exporter family, fused ATPase and inner membrane
subunits [Candidatus Liberibacter asiaticus str. psy62]
Length = 528
Score = 22.7 bits (47), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 63 PSRVVILVGPSGSGKSCL 80
P + LVG SG+GK+ +
Sbjct: 315 PGETIALVGDSGAGKTSI 332
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.322 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 149,139
Number of Sequences: 1233
Number of extensions: 5785
Number of successful extensions: 63
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 34
Number of HSP's gapped (non-prelim): 30
length of query: 246
length of database: 328,796
effective HSP length: 72
effective length of query: 174
effective length of database: 240,020
effective search space: 41763480
effective search space used: 41763480
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 37 (18.9 bits)