Query         gi|254780568|ref|YP_003064981.1| hypothetical protein CLIBASIA_02275 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 70
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Wed Jun  1 18:13:47 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780568.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2jby_A M11L protein; apoptosi  50.3      11 0.00034   18.2   2.4   17   40-56     90-106 (145)
  2 >1mwv_A Bpkatg, catalase-perox  25.0      23 0.00068   16.6   0.6   12    3-14     20-31  (66)
  3 >2cca_A Peroxidase/catalase T;  24.2      24 0.00072   16.5   0.6   12    3-14     20-31  (66)
  4 >1itk_A Catalase-peroxidase; h  23.4      26 0.00076   16.4   0.6   12    3-14     20-31  (64)
  5 >1ub2_A Catalase-peroxidase; K  19.4      35   0.001   15.7   0.6   12    3-14     53-64  (99)
  6 >5rub_A Rubisco (ribulose-1,5-  11.0 1.1E+02  0.0032   13.2   1.3   20    2-22     63-82  (264)
  7 >1geh_A Ribulose-1,5-bisphosph   9.5 1.3E+02  0.0037   12.8   1.2   16    2-17     60-75  (237)
  8 >1mc3_A Glucose-1-phosphate th   7.5 1.4E+02  0.0041   12.6   0.7   24    8-31     14-37  (46)
  9 >2qx5_A Nucleoporin NIC96; mRN   6.3   1E+02  0.0031   13.3  -0.5   50   14-63     26-75  (85)
 10 >3cjl_A Domain of unknown func   5.7 1.7E+02  0.0051   12.1   0.3   11   13-23     30-40  (70)

No 1  
>>2jby_A M11L protein; apoptosis, BCL-2 family, myxoma virus; 2.41A {Myxoma virus} PDB: 2jbx_A 2o42_A (A:)
Probab=50.29  E-value=11  Score=18.18  Aligned_cols=17  Identities=35%  Similarity=0.462  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999
Q gi|254780568|r   40 LSVSLLALSFLSMIITV   56 (70)
Q Consensus        40 lsvsllalsflsmiitv   56 (70)
                      -||-|-++|++|||+.-
T Consensus        90 PSVKLAtiSLlSiIi~k  106 (145)
T 2jby_A           90 PSVKLATLTLLASVIKK  106 (145)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH
T ss_conf             50689999999999999


No 2  
>>1mwv_A Bpkatg, catalase-peroxidase protein KATG; tuberculosis, heme modification, oxidoreductase; HET: HEM; 1.70A {Burkholderia pseudomallei} (A:233-247,A:358-408)
Probab=24.98  E-value=23  Score=16.63  Aligned_cols=12  Identities=42%  Similarity=0.526  Sum_probs=9.4

Q ss_pred             EEEHHHHHHHHH
Q ss_conf             110038888999
Q gi|254780568|r    3 QIYSPISERFLF   14 (70)
Q Consensus         3 qiyspiserflf   14 (70)
                      .+|.+||+||+-
T Consensus        20 P~Y~kIs~rF~~   31 (66)
T 1mwv_A           20 PAYEKISRRFHE   31 (66)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
T ss_conf             878999999850


No 3  
>>2cca_A Peroxidase/catalase T; oxidoreductase, catalase-peroxidase, KATG, heme, hydrogen peroxide, iron, metal-binding, organic radical; HET: HEM; 2.0A {Mycobacterium tuberculosis} (A:258-272,A:384-434)
Probab=24.22  E-value=24  Score=16.52  Aligned_cols=12  Identities=42%  Similarity=0.700  Sum_probs=9.3

Q ss_pred             EEEHHHHHHHHH
Q ss_conf             110038888999
Q gi|254780568|r    3 QIYSPISERFLF   14 (70)
Q Consensus         3 qiyspiserflf   14 (70)
                      .+|.+||+||+-
T Consensus        20 P~Y~kIs~rF~~   31 (66)
T 2cca_A           20 PIYERITRRWLE   31 (66)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
T ss_conf             777799999853


No 4  
>>1itk_A Catalase-peroxidase; heme protein, oxidoreductase; HET: HEM; 2.00A {Haloarcula marismortui} (A:247-261,A:375-423)
Probab=23.36  E-value=26  Score=16.38  Aligned_cols=12  Identities=25%  Similarity=0.271  Sum_probs=9.4

Q ss_pred             EEEHHHHHHHHH
Q ss_conf             110038888999
Q gi|254780568|r    3 QIYSPISERFLF   14 (70)
Q Consensus         3 qiyspiserflf   14 (70)
                      .+|.+||+||+-
T Consensus        20 P~Y~kIs~rF~~   31 (64)
T 1itk_A           20 PDYREVMETFQE   31 (64)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
T ss_conf             738999999862


No 5  
>>1ub2_A Catalase-peroxidase; KATG, synechococcus PCC 7942, cyanobacteria, oxidoreductase; HET: HEM; 2.40A {Synechococcus elongatus pcc 7942} (A:250-297,A:378-428)
Probab=19.36  E-value=35  Score=15.70  Aligned_cols=12  Identities=50%  Similarity=0.639  Sum_probs=9.6

Q ss_pred             EEEHHHHHHHHH
Q ss_conf             110038888999
Q gi|254780568|r    3 QIYSPISERFLF   14 (70)
Q Consensus         3 qiyspiserflf   14 (70)
                      .+|.+||+||+-
T Consensus        53 P~Y~kIs~rF~~   64 (99)
T 1ub2_A           53 PEYRKISERFYQ   64 (99)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
T ss_conf             777799999876


No 6  
>>5rub_A Rubisco (ribulose-1,5-bisphosphate carboxylase(slash)oxygenase); lyase(carbon-carbon); 1.70A {Rhodospirillum rubrum} (A:160-317,A:385-490)
Probab=11.01  E-value=1.1e+02  Score=13.18  Aligned_cols=20  Identities=25%  Similarity=0.574  Sum_probs=14.8

Q ss_pred             CEEEHHHHHHHHHHHHHHHHH
Q ss_conf             311003888899999999999
Q gi|254780568|r    2 IQIYSPISERFLFVILERMRK   22 (70)
Q Consensus         2 iqiyspiserflfvilermrk   22 (70)
                      -|-|+|..|||.++. |-|+|
T Consensus        63 sQpF~~~~eRv~~v~-eAi~k   82 (264)
T 5rub_A           63 NQPFAPLRDTIALVA-DAMRR   82 (264)
T ss_dssp             CBTTBCHHHHHHHHH-HHHHH
T ss_pred             CCCCCCHHHHHHHHH-HHHHH
T ss_conf             987765899999999-99999


No 7  
>>1geh_A Ribulose-1,5-bisphosphate carboxylase/oxygenase; pentagonal toroid decamer, rubisco, lyase; 2.80A {Thermococcus kodakarensis KOD1} (A:137-288,A:360-444)
Probab=9.52  E-value=1.3e+02  Score=12.83  Aligned_cols=16  Identities=19%  Similarity=0.171  Sum_probs=13.1

Q ss_pred             CEEEHHHHHHHHHHHH
Q ss_conf             3110038888999999
Q gi|254780568|r    2 IQIYSPISERFLFVIL   17 (70)
Q Consensus         2 iqiyspiserflfvil   17 (70)
                      -|-|+|..||+.++.-
T Consensus        60 ~q~f~p~~eRv~~v~e   75 (237)
T 1geh_A           60 SPWYNRFEERAEIMAK   75 (237)
T ss_dssp             CCTTSCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHH
T ss_conf             9887859999999999


No 8  
>>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} (A:251-296)
Probab=7.49  E-value=1.4e+02  Score=12.62  Aligned_cols=24  Identities=17%  Similarity=0.268  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             888899999999999999999999
Q gi|254780568|r    8 ISERFLFVILERMRKKLYGIFLMM   31 (70)
Q Consensus         8 iserflfvilermrkklygiflmm   31 (70)
                      |+..-|.-+-++|.|.-||-+|+-
T Consensus        14 I~~~~l~~~a~~~~ks~YG~YL~~   37 (46)
T 1mc3_A           14 LDDEGVKRAASSLAKTGYGQYLLE   37 (46)
T ss_dssp             SCHHHHHHHHHHTTTSHHHHHHHH
T ss_pred             CCHHHHHHHHHHCCCCCHHHHHHH
T ss_conf             799999999987348958999999


No 9  
>>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A (A:54-88,A:296-345)
Probab=6.25  E-value=1e+02  Score=13.27  Aligned_cols=50  Identities=20%  Similarity=0.200  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999999999999999999
Q gi|254780568|r   14 FVILERMRKKLYGIFLMMWICYAAIILSVSLLALSFLSMIITVAIALVQY   63 (70)
Q Consensus        14 fvilermrkklygiflmmwicyaaiilsvsllalsflsmiitvaialvqy   63 (70)
                      +-|+|.|+.|---.+...-+.-.---..+..|.-..-.--+..||||-.|
T Consensus        26 ~~~~~~~~~~~p~lYFqvLlLTGqFE~AIefLyr~~~~dAVHfAIAL~~y   75 (85)
T 2qx5_A           26 WKILESMKSKFSNYYLQTLLLSGLYGLAIDYTYTFSEMDAVHLAIGLASL   75 (85)
T ss_dssp             HHHHHTTTTSGTTCHHHHHHHTTCHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC
T ss_conf             99999987042137899999998899999997355860199999999981


No 10 
>>3cjl_A Domain of unknown function; YP_050007.1, structural genomics, joint center for structural genomics, JCSG; 2.20A {Pectobacterium atrosepticum SCRI1043} (A:1-70)
Probab=5.69  E-value=1.7e+02  Score=12.15  Aligned_cols=11  Identities=45%  Similarity=0.782  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999999999
Q gi|254780568|r   13 LFVILERMRKK   23 (70)
Q Consensus        13 lfvilermrkk   23 (70)
                      +|-|+||++.|
T Consensus        30 if~Ivekv~~k   40 (70)
T 3cjl_A           30 LFKLLEKVDGK   40 (70)
T ss_dssp             HHHHHHHHTTT
T ss_pred             HHHHHHHHHHC
T ss_conf             99999998713


Done!