Query gi|254780568|ref|YP_003064981.1| hypothetical protein CLIBASIA_02275 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 70 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed Jun 1 18:13:47 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780568.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2jby_A M11L protein; apoptosi 50.3 11 0.00034 18.2 2.4 17 40-56 90-106 (145) 2 >1mwv_A Bpkatg, catalase-perox 25.0 23 0.00068 16.6 0.6 12 3-14 20-31 (66) 3 >2cca_A Peroxidase/catalase T; 24.2 24 0.00072 16.5 0.6 12 3-14 20-31 (66) 4 >1itk_A Catalase-peroxidase; h 23.4 26 0.00076 16.4 0.6 12 3-14 20-31 (64) 5 >1ub2_A Catalase-peroxidase; K 19.4 35 0.001 15.7 0.6 12 3-14 53-64 (99) 6 >5rub_A Rubisco (ribulose-1,5- 11.0 1.1E+02 0.0032 13.2 1.3 20 2-22 63-82 (264) 7 >1geh_A Ribulose-1,5-bisphosph 9.5 1.3E+02 0.0037 12.8 1.2 16 2-17 60-75 (237) 8 >1mc3_A Glucose-1-phosphate th 7.5 1.4E+02 0.0041 12.6 0.7 24 8-31 14-37 (46) 9 >2qx5_A Nucleoporin NIC96; mRN 6.3 1E+02 0.0031 13.3 -0.5 50 14-63 26-75 (85) 10 >3cjl_A Domain of unknown func 5.7 1.7E+02 0.0051 12.1 0.3 11 13-23 30-40 (70) No 1 >>2jby_A M11L protein; apoptosis, BCL-2 family, myxoma virus; 2.41A {Myxoma virus} PDB: 2jbx_A 2o42_A (A:) Probab=50.29 E-value=11 Score=18.18 Aligned_cols=17 Identities=35% Similarity=0.462 Sum_probs=14.5 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999 Q gi|254780568|r 40 LSVSLLALSFLSMIITV 56 (70) Q Consensus 40 lsvsllalsflsmiitv 56 (70) -||-|-++|++|||+.- T Consensus 90 PSVKLAtiSLlSiIi~k 106 (145) T 2jby_A 90 PSVKLATLTLLASVIKK 106 (145) T ss_dssp HHHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHH T ss_conf 50689999999999999 No 2 >>1mwv_A Bpkatg, catalase-peroxidase protein KATG; tuberculosis, heme modification, oxidoreductase; HET: HEM; 1.70A {Burkholderia pseudomallei} (A:233-247,A:358-408) Probab=24.98 E-value=23 Score=16.63 Aligned_cols=12 Identities=42% Similarity=0.526 Sum_probs=9.4 Q ss_pred EEEHHHHHHHHH Q ss_conf 110038888999 Q gi|254780568|r 3 QIYSPISERFLF 14 (70) Q Consensus 3 qiyspiserflf 14 (70) .+|.+||+||+- T Consensus 20 P~Y~kIs~rF~~ 31 (66) T 1mwv_A 20 PAYEKISRRFHE 31 (66) T ss_dssp HHHHHHHHHHHH T ss_pred HHHHHHHHHHHH T ss_conf 878999999850 No 3 >>2cca_A Peroxidase/catalase T; oxidoreductase, catalase-peroxidase, KATG, heme, hydrogen peroxide, iron, metal-binding, organic radical; HET: HEM; 2.0A {Mycobacterium tuberculosis} (A:258-272,A:384-434) Probab=24.22 E-value=24 Score=16.52 Aligned_cols=12 Identities=42% Similarity=0.700 Sum_probs=9.3 Q ss_pred EEEHHHHHHHHH Q ss_conf 110038888999 Q gi|254780568|r 3 QIYSPISERFLF 14 (70) Q Consensus 3 qiyspiserflf 14 (70) .+|.+||+||+- T Consensus 20 P~Y~kIs~rF~~ 31 (66) T 2cca_A 20 PIYERITRRWLE 31 (66) T ss_dssp HHHHHHHHHHHH T ss_pred HHHHHHHHHHHH T ss_conf 777799999853 No 4 >>1itk_A Catalase-peroxidase; heme protein, oxidoreductase; HET: HEM; 2.00A {Haloarcula marismortui} (A:247-261,A:375-423) Probab=23.36 E-value=26 Score=16.38 Aligned_cols=12 Identities=25% Similarity=0.271 Sum_probs=9.4 Q ss_pred EEEHHHHHHHHH Q ss_conf 110038888999 Q gi|254780568|r 3 QIYSPISERFLF 14 (70) Q Consensus 3 qiyspiserflf 14 (70) .+|.+||+||+- T Consensus 20 P~Y~kIs~rF~~ 31 (64) T 1itk_A 20 PDYREVMETFQE 31 (64) T ss_dssp HHHHHHHHHHHH T ss_pred HHHHHHHHHHHH T ss_conf 738999999862 No 5 >>1ub2_A Catalase-peroxidase; KATG, synechococcus PCC 7942, cyanobacteria, oxidoreductase; HET: HEM; 2.40A {Synechococcus elongatus pcc 7942} (A:250-297,A:378-428) Probab=19.36 E-value=35 Score=15.70 Aligned_cols=12 Identities=50% Similarity=0.639 Sum_probs=9.6 Q ss_pred EEEHHHHHHHHH Q ss_conf 110038888999 Q gi|254780568|r 3 QIYSPISERFLF 14 (70) Q Consensus 3 qiyspiserflf 14 (70) .+|.+||+||+- T Consensus 53 P~Y~kIs~rF~~ 64 (99) T 1ub2_A 53 PEYRKISERFYQ 64 (99) T ss_dssp HHHHHHHHHHHH T ss_pred HHHHHHHHHHHH T ss_conf 777799999876 No 6 >>5rub_A Rubisco (ribulose-1,5-bisphosphate carboxylase(slash)oxygenase); lyase(carbon-carbon); 1.70A {Rhodospirillum rubrum} (A:160-317,A:385-490) Probab=11.01 E-value=1.1e+02 Score=13.18 Aligned_cols=20 Identities=25% Similarity=0.574 Sum_probs=14.8 Q ss_pred CEEEHHHHHHHHHHHHHHHHH Q ss_conf 311003888899999999999 Q gi|254780568|r 2 IQIYSPISERFLFVILERMRK 22 (70) Q Consensus 2 iqiyspiserflfvilermrk 22 (70) -|-|+|..|||.++. |-|+| T Consensus 63 sQpF~~~~eRv~~v~-eAi~k 82 (264) T 5rub_A 63 NQPFAPLRDTIALVA-DAMRR 82 (264) T ss_dssp CBTTBCHHHHHHHHH-HHHHH T ss_pred CCCCCCHHHHHHHHH-HHHHH T ss_conf 987765899999999-99999 No 7 >>1geh_A Ribulose-1,5-bisphosphate carboxylase/oxygenase; pentagonal toroid decamer, rubisco, lyase; 2.80A {Thermococcus kodakarensis KOD1} (A:137-288,A:360-444) Probab=9.52 E-value=1.3e+02 Score=12.83 Aligned_cols=16 Identities=19% Similarity=0.171 Sum_probs=13.1 Q ss_pred CEEEHHHHHHHHHHHH Q ss_conf 3110038888999999 Q gi|254780568|r 2 IQIYSPISERFLFVIL 17 (70) Q Consensus 2 iqiyspiserflfvil 17 (70) -|-|+|..||+.++.- T Consensus 60 ~q~f~p~~eRv~~v~e 75 (237) T 1geh_A 60 SPWYNRFEERAEIMAK 75 (237) T ss_dssp CCTTSCHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHH T ss_conf 9887859999999999 No 8 >>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} (A:251-296) Probab=7.49 E-value=1.4e+02 Score=12.62 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=17.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 888899999999999999999999 Q gi|254780568|r 8 ISERFLFVILERMRKKLYGIFLMM 31 (70) Q Consensus 8 iserflfvilermrkklygiflmm 31 (70) |+..-|.-+-++|.|.-||-+|+- T Consensus 14 I~~~~l~~~a~~~~ks~YG~YL~~ 37 (46) T 1mc3_A 14 LDDEGVKRAASSLAKTGYGQYLLE 37 (46) T ss_dssp SCHHHHHHHHHHTTTSHHHHHHHH T ss_pred CCHHHHHHHHHHCCCCCHHHHHHH T ss_conf 799999999987348958999999 No 9 >>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A (A:54-88,A:296-345) Probab=6.25 E-value=1e+02 Score=13.27 Aligned_cols=50 Identities=20% Similarity=0.200 Sum_probs=20.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999999999999999999999999 Q gi|254780568|r 14 FVILERMRKKLYGIFLMMWICYAAIILSVSLLALSFLSMIITVAIALVQY 63 (70) Q Consensus 14 fvilermrkklygiflmmwicyaaiilsvsllalsflsmiitvaialvqy 63 (70) +-|+|.|+.|---.+...-+.-.---..+..|.-..-.--+..||||-.| T Consensus 26 ~~~~~~~~~~~p~lYFqvLlLTGqFE~AIefLyr~~~~dAVHfAIAL~~y 75 (85) T 2qx5_A 26 WKILESMKSKFSNYYLQTLLLSGLYGLAIDYTYTFSEMDAVHLAIGLASL 75 (85) T ss_dssp HHHHHTTTTSGTTCHHHHHHHTTCHHHHHHHHHTTCHHHHHHHHHHHHHT T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC T ss_conf 99999987042137899999998899999997355860199999999981 No 10 >>3cjl_A Domain of unknown function; YP_050007.1, structural genomics, joint center for structural genomics, JCSG; 2.20A {Pectobacterium atrosepticum SCRI1043} (A:1-70) Probab=5.69 E-value=1.7e+02 Score=12.15 Aligned_cols=11 Identities=45% Similarity=0.782 Sum_probs=0.0 Q ss_pred HHHHHHHHHHH Q ss_conf 99999999999 Q gi|254780568|r 13 LFVILERMRKK 23 (70) Q Consensus 13 lfvilermrkk 23 (70) +|-|+||++.| T Consensus 30 if~Ivekv~~k 40 (70) T 3cjl_A 30 LFKLLEKVDGK 40 (70) T ss_dssp HHHHHHHHTTT T ss_pred HHHHHHHHHHC T ss_conf 99999998713 Done!