RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780568|ref|YP_003064981.1| hypothetical protein
CLIBASIA_02275 [Candidatus Liberibacter asiaticus str. psy62]
         (70 letters)



>gnl|CDD|163225 TIGR03348, VI_IcmF, type VI secretion protein IcmF.  Members of
           this protein family are IcmF homologs and tend to be
           associated with type VI secretion systems.
          Length = 1169

 Score = 25.4 bits (56), Expect = 3.8
 Identities = 8/44 (18%), Positives = 12/44 (27%), Gaps = 7/44 (15%)

Query: 29  LMMWICYAAIILSVSLLALSFL-------SMIITVAIALVQYLR 65
            +    YAA  L+   L   +          +  V   L  Y  
Sbjct: 429 WLRRGAYAAAALAALGLLGLWSLSYLANRDYLDEVRTQLEAYRA 472


>gnl|CDD|148201 pfam06450, NhaB, Bacterial Na+/H+ antiporter B (NhaB).  This family
           consists of several bacterial Na+/H+ antiporter B (NhaB)
           proteins. The exact function of this family is unknown.
          Length = 515

 Score = 25.2 bits (55), Expect = 4.2
 Identities = 17/47 (36%), Positives = 28/47 (59%)

Query: 12  FLFVILERMRKKLYGIFLMMWICYAAIILSVSLLALSFLSMIITVAI 58
            LF+  + + K    I L +  C+AA  LS  L AL+ +++II+VA+
Sbjct: 114 LLFIFTKLLLKIRSKILLSLAFCFAAAFLSAFLDALTVVAVIISVAV 160


>gnl|CDD|115814 pfam07184, CTV_P33, Citrus tristeza virus P33 protein.  This family
           consists of several Citrus tristeza virus (CTV) P33
           proteins. The function of P33 is unclear although it is
           known that the protein is not needed for virion
           formation.
          Length = 303

 Score = 25.0 bits (54), Expect = 4.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)

Query: 34  CYAAIILSVSLLALSFLSMIITV 56
           CYA  +L VSLL +S L  II +
Sbjct: 281 CYAVCVLVVSLLIMSGLLAIIFI 303


>gnl|CDD|185021 PRK15061, PRK15061, catalase/hydroperoxidase HPI(I); Provisional.
          Length = 726

 Score = 24.7 bits (55), Expect = 4.9
 Identities = 6/10 (60%), Positives = 6/10 (60%)

Query: 4   IYSPISERFL 13
            Y  IS RFL
Sbjct: 375 EYEKISRRFL 384


>gnl|CDD|184312 PRK13765, PRK13765, ATP-dependent protease Lon; Provisional.
          Length = 637

 Score = 24.6 bits (54), Expect = 5.2
 Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 3/53 (5%)

Query: 18  ERMRKKLYGIFLMMWICYAAIILSVSLLALSFLSMIITVAI---ALVQYLRGS 67
           E  RK+     ++M I  A II    + A   L  II   +   AL  +    
Sbjct: 113 EEARKRNQMRNMLMMIIIAGIIGYAFIYAGQILWGIIAAGLIYMALRYFRPKE 165


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.340    0.148    0.426 

Gapped
Lambda     K      H
   0.267   0.0779    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,125,639
Number of extensions: 57960
Number of successful extensions: 412
Number of sequences better than 10.0: 1
Number of HSP's gapped: 408
Number of HSP's successfully gapped: 72
Length of query: 70
Length of database: 5,994,473
Length adjustment: 41
Effective length of query: 29
Effective length of database: 5,108,545
Effective search space: 148147805
Effective search space used: 148147805
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 50 (22.9 bits)