RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780568|ref|YP_003064981.1| hypothetical protein
CLIBASIA_02275 [Candidatus Liberibacter asiaticus str. psy62]
         (70 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 36.8 bits (85), Expect = 0.001
 Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 13/73 (17%)

Query: 3   QIYSPISERFLFVILERM---------RKKLY--GIFLMMWICYAAIILSVSLLALSFLS 51
           Q Y  +    +    E +          +K++  G+ ++ W+   +       L    +S
Sbjct: 178 QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPIS 237

Query: 52  M-IITVAIALVQY 63
             +I V I L  Y
Sbjct: 238 CPLIGV-IQLAHY 249



 Score = 26.8 bits (59), Expect = 1.3
 Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 12/41 (29%)

Query: 40  LSVSLLALSFLSMIIT-----------VAIALVQYLRGSFV 69
           LS+S L    +   +            V I+LV   + + V
Sbjct: 339 LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAK-NLV 378


>2qyg_A Ribulose bisphosphate carboxylase-like protein 2;
           beta-alpha-barrel, unknown function; 3.30A
           {Rhodopseudomonas palustris CGA009}
          Length = 452

 Score = 26.7 bits (59), Expect = 1.3
 Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 9/72 (12%)

Query: 3   QIYSPISERFLFVILERMR-------KKLY--GIFLMMWICYAAIILSVSLLALSFLSMI 53
             + P++ER   +     R        K+Y   I   +        ++V+  A + L   
Sbjct: 226 VDWCPLAERAALLGDACRRASAETGVPKIYLANITDEVDRLTELHDVAVANGAGALLINA 285

Query: 54  ITVAIALVQYLR 65
           + V ++ V+ LR
Sbjct: 286 MPVGLSAVRMLR 297


>2w61_A GAS2P, glycolipid-anchored surface protein 2; glycoprotein, cell
           membrane, fungal cell WALL, transglycosylation, glucan,
           membrane; 1.62A {Saccharomyces cerevisiae} PDB: 2w62_A*
           2w63_A*
          Length = 555

 Score = 25.0 bits (54), Expect = 4.4
 Identities = 3/34 (8%), Positives = 17/34 (50%), Gaps = 2/34 (5%)

Query: 2   IQIYSPISERFLFVILERMRKKLYGIFLMMWICY 35
           +++Y+    +   + +E +     G+++++ +  
Sbjct: 104 LRVYAIDPTKSHDICMEALSA--EGMYVLLDLSE 135


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.340    0.148    0.426 

Gapped
Lambda     K      H
   0.267   0.0448    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 573,462
Number of extensions: 19709
Number of successful extensions: 93
Number of sequences better than 10.0: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 9
Length of query: 70
Length of database: 5,693,230
Length adjustment: 40
Effective length of query: 30
Effective length of database: 4,723,470
Effective search space: 141704100
Effective search space used: 141704100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 50 (23.7 bits)