BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780568|ref|YP_003064981.1| hypothetical protein
CLIBASIA_02275 [Candidatus Liberibacter asiaticus str. psy62]
         (70 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780568|ref|YP_003064981.1| hypothetical protein CLIBASIA_02275 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 70

 Score =  135 bits (339), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 70/70 (100%), Positives = 70/70 (100%)

Query: 1  MIQIYSPISERFLFVILERMRKKLYGIFLMMWICYAAIILSVSLLALSFLSMIITVAIAL 60
          MIQIYSPISERFLFVILERMRKKLYGIFLMMWICYAAIILSVSLLALSFLSMIITVAIAL
Sbjct: 1  MIQIYSPISERFLFVILERMRKKLYGIFLMMWICYAAIILSVSLLALSFLSMIITVAIAL 60

Query: 61 VQYLRGSFVK 70
          VQYLRGSFVK
Sbjct: 61 VQYLRGSFVK 70


>gi|254780821|ref|YP_003065234.1| FolC bifunctional protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 429

 Score = 23.9 bits (50), Expect = 0.48,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 23/37 (62%)

Query: 9   SERFLFVILERMRKKLYGIFLMMWICYAAIILSVSLL 45
           S +  ++++  +  K YG +L  ++  + I+LSVSL+
Sbjct: 320 SNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLSVSLI 356


>gi|255764468|ref|YP_003064806.2| permease protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 361

 Score = 20.4 bits (41), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 7/18 (38%), Positives = 12/18 (66%)

Query: 19  RMRKKLYGIFLMMWICYA 36
           R RKK++ IF+ + I + 
Sbjct: 300 RQRKKIHPIFISLSISFG 317


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.340    0.148    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,328
Number of Sequences: 1233
Number of extensions: 1060
Number of successful extensions: 8
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 70
length of database: 328,796
effective HSP length: 41
effective length of query: 29
effective length of database: 278,243
effective search space:  8069047
effective search space used:  8069047
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 31 (16.5 bits)