HHsearch alignment for GI: 254780569 and conserved domain: TIGR00476
>TIGR00476 selD selenide, water dikinase; InterPro: IPR004536 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelD, known as selenophosphate synthetase, selenium donor protein, and selenide, water dikinase. SelD provides reduced selenium for the selenium transferase SelA. This protein itself contains selenocysteine in many species; any sequence scoring above the trusted cut-off but not aligning to the beginning of the HMM is likely have selenocysteine residue incorrectly interpreted as a stop codon upstream of the given sequence.; GO: 0004756 selenide water dikinase activity, 0005524 ATP binding.
Probab=99.65 E-value=4.3e-16 Score=133.01 Aligned_cols=280 Identities=19% Similarity=0.243 Sum_probs=165.1
Q ss_pred CCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCCHH----H
Q ss_conf 731575655446887189995688878999999828855016888885434678854112211000--0033203----7
Q gi|254780569|r 46 GFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDY--LATSQLN----P 119 (357)
Q Consensus 46 ~f~~~~~l~~~~~~~p~Lv~~tDGVGTK~~ia~~~~~~~~ig~Dlvam~vNDi~~~GA~Pl~fldy--ia~~~l~----~ 119 (357)
T Consensus 58 DdA~v~~~~n-G~---~~v~T~D~~~-----PiVddPY~-~G~IAaaN~~SDiYAMG~~~i~~~l~~~~~~~kL~drer~ 127 (372)
T TIGR00476 58 DDAAVYERHN-GL---SLVKTVDVIT-----PIVDDPYL-FGRIAAANALSDIYAMGGLPIVALLILVGVSNKLSDRERI 127 (372)
T ss_pred CCCEEEECCC-CE---EEEEEEEEEE-----EEECCHHH-HHHHHHHHHHHHHHHCCCCCHHHEEEEECCCCCCCCCCCC
T ss_conf 4311353179-88---9999633898-----32568355-4489987567777743773210143330356668754442
Q ss_pred HHHHHHHHHHHHHHHHCCCEECCCCHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCH
Q ss_conf 89999999999999860952214301000001365566336899997415421133345552489995386554323203
Q gi|254780569|r 120 DQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDLILGLPSSGLHSNGFAL 199 (357)
Q Consensus 120 ~~~~~ii~gi~~~c~~~g~~liGGETAemP~vy~~~~~Dlag~~vG~v~k~~ii~~~~i~~GD~IIgl~SsG~HsNGySL 199 (357)
T Consensus 128 ~v~Rev~~G~~d~~reakt~~~GGhtil~pw----p~~--Gg~vtgv~~~~~~~~~~~a~~G~~L~LTKPLGtqv-~~~~ 200 (372)
T TIGR00476 128 EVVREVIKGFKDACREAKTALVGGHTILNPW----PVF--GGAVTGVCPEEEVITKSGAQVGDVLILTKPLGTQV-LVAV 200 (372)
T ss_pred CHHHHHHHHHHHHHHHCCEEEECCEEECCCC----CCC--CCEEEEECCCCCEECCCCCCCCCEEEEECCCHHHH-HHHH
T ss_conf 0106877658888876890797362112762----000--54063102788475258874241678517516899-9987
Q ss_pred HHH--HHHH-HCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHH-----HCCCCCCCCCCCCCCHHHHCCCCCC-CCC
Q ss_conf 444--4553-115545667666663066875397201226888876-----3046322223454201220120025-443
Q gi|254780569|r 200 VRK--IISL-SQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKIL-----RKTGKIKALAHITGGGLTENIPRAI-PAH 270 (357)
Q Consensus 200 vRk--il~~-~~~~~~~~~~~~~~~tl~e~LL~PtriY~~~i~~ll-----~~~~~i~~~ahITGGGl~~nL~RiL-p~g 270 (357)
T Consensus 201 ~~~~~~~~~~nkik~~i~~-ee~~~~~~~A~e~M~~~Nryalkal~~A~~~~~~~~~~A~TDvTGFGlLGH~~~~ak~~~ 279 (372)
T TIGR00476 201 EKKLDIFKDLNKIKLSILK-EERELIINEAIENMARLNRYALKALRKAAELMNSKDAKALTDVTGFGLLGHAQEMAKNSN 279 (372)
T ss_pred HHCCCCHHCCCCEEEEEEC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHCC
T ss_conf 6311200110414678607-527889989999999888999999999887664418715311456545688999874078
Q ss_pred EEEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEE-CHHHHHHHHHHHHHC----CCCEEEEEEEEECC
Q ss_conf 04787100489867999999966989889876524671169998-689899999999977----99808999999778
Q gi|254780569|r 271 LTASINLNSVEVPQIISWLSKKAHVKPAEVLRTFNCGIGMVIIV-HPDNKDCIIKKFQEN----NENIILIGEVTQRS 343 (357)
Q Consensus 271 l~a~Id~~~~p~p~iF~~I~~~g~I~~~EM~rtFNmGiGmvlvV-~~e~a~~v~~~l~~~----g~~a~iIG~V~~~~ 343 (357)
T Consensus 280 ~~~~~~~e~lP~l~~~~~~~k~~~~~~G~~~g~~~~~~G~L~~~~~~~~~~ll~~~~~S~~y~~~~~~~~~~~v~~G~ 357 (372)
T TIGR00476 280 VEARIVYEKLPVLKKVEELSKLKGVPLGAIEGLETAGSGLLLSELPREKAALLCDPVKSGGYLFEVQKEVKEKVEKGT 357 (372)
T ss_pred CEEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 669999530887354578898632433121354212674221357078986426101051357766688851110101