HHsearch alignment for GI: 254780569 and conserved domain: TIGR03267
>TIGR03267 methan_mark_2 putative methanogenesis marker protein 2. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. Sequence similarity to various bacterial proteins is reflected in Pfam models pfam00586 and pfam02769, AIR synthase related protein N-terminal and C-terminal domains, respectively. The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=100.00 E-value=8.9e-38 Score=284.91 Aligned_cols=286 Identities=23% Similarity=0.370 Sum_probs=220.5
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 90889899999999999998862673543667773157565544688718999568887899999982885501688888
Q gi|254780569|r 13 QAGVNIEAGNRTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKNDTIGIDLVA 92 (357)
Q Consensus 13 ~aGVdi~~~~~~v~~i~~~~~~t~~~~v~~~ig~f~~~~~l~~~~~~~p~Lv~~tDGVGTK~~ia~~~~~~~~ig~Dlva 92 (357)
T Consensus 12 ~~g~~~k~~~~~~~~~~~~~~~~~~~~~vvgpGdDAavi~i~~----~~~~~~~~d~~~~~~~~~---dPy-~gG~~aVa 83 (323)
T TIGR03267 12 FEGVTRKHPIKDVVEILEPLDVTYEGNVIVDFGDDAAAIKIGG----DDILLLAADGIWGKLLDA---DPW-WAGYCAVL 83 (323)
T ss_pred CCCCHHCCCHHHHHHHHHHCCCCCCCCEEECCCCCEEEEEECC----CCEEEEEECCCCCCCCCC---CHH-HHHHHHHH
T ss_conf 8783100598999999864334558875424798606998789----858999976778875146---978-98999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHCCCCCCCCCCC-EEEEEEEEECCCC
Q ss_conf 543467885411221100000332037899999999999998609522143010000013655663-3689999741542
Q gi|254780569|r 93 MCVNDILTHGAEPLFFLDYLATSQLNPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYD-LAGFAVGAVERKE 171 (357)
Q Consensus 93 m~vNDi~~~GA~Pl~fldyia~~~l~~~~~~~ii~gi~~~c~~~g~~liGGETAemP~vy~~~~~D-lag~~vG~v~k~~ 171 (357)
T Consensus 84 ~~v~DIaamGA~Pla~ld~L~~~--~pe~~~~i~~Gi~~a~~~~gvpvVGG~t--~~~----~~~~~v~v~vvGiv~~~~ 155 (323)
T TIGR03267 84 VNVNDIAAMGGKPVGMVNVLSIN--DVDVCREVLEGMREGAWKFGVPVVGGHT--HPD----TPYNALDVAIVGIAKEDC 155 (323)
T ss_pred HHHHHHHHHCCCHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHCCCCEECCCC--CCC----CCCCEEEEEEEEEECCCC
T ss_conf 99888998087618863022679--8789999999999999874997766734--568----887705899999874111
Q ss_pred CCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 11333455524899953865543232034444553115545667666663066875397201226888876304632222
Q gi|254780569|r 172 LLSPENVCAGDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKIKAL 251 (357)
Q Consensus 172 ii~~~~i~~GD~IIgl~SsG~HsNGySLvRkil~~~~~~~~~~~~~~~~~tl~e~LL~PtriY~~~i~~ll~~~~~i~~~ 251 (357)
T Consensus 156 ~i~~~~a~~GD~ii~~~~---------l~g~~~~~~~~~~~~~~~-~~-----~~~~~~~---~~~~~~l~~~-~lv~a~ 216 (323)
T TIGR03267 156 IIRSDTAKPGDLIIFAID---------LDGRPYPSFPLNWDTTTM-KS-----PDYLRAQ---MDAVVEIAER-KLVKAG 216 (323)
T ss_pred EEECCCCCCCCEEEEEEC---------CCCCCCCCCCCCCCCCCC-CC-----HHHHHHH---HHHHHHHHHH-HHHHHH
T ss_conf 454478999999999964---------676116455344310134-67-----4777888---9989999986-678766
Q ss_pred CCCCCCHHHHCCCCCC-CCCEEEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHCC
Q ss_conf 3454201220120025-443047871004898679999999669898898765246711699986898999999999779
Q gi|254780569|r 252 AHITGGGLTENIPRAI-PAHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQENN 330 (357)
Q Consensus 252 ahITGGGl~~nL~RiL-p~gl~a~Id~~~~p~p~iF~~I~~~g~I~~~EM~rtFNmGiGmvlvV~~e~a~~v~~~l~~~g 330 (357)
T Consensus 217 ~DiS~gGL~~~l~em~~~s~~Ga~I~l~~iP~~~~---------~~~~~~l~~~~-~~~~l~tv~~~~~~~i~~~~~~~g 286 (323)
T TIGR03267 217 KDISNPGLIGTLGMLLEASRVGAEVDLESIPKPED---------VDMVTWLKMYP-GSGFVLTADPENVREIVRVLEDAG 286 (323)
T ss_pred HHCCCCCHHHHHHHHHHHCCCCEEEEHHHCCCCCC---------CCHHHHHHHCC-CCCEEEEECHHHHHHHHHHHHHCC
T ss_conf 41264716779999986448837997531888889---------99999998489-983899986503999999999879
Q ss_pred CCEEEEEEEEECC
Q ss_conf 9808999999778
Q gi|254780569|r 331 ENIILIGEVTQRS 343 (357)
Q Consensus 331 ~~a~iIG~V~~~~ 343 (357)
T Consensus 287 i~~~vIG~Vt~~~ 299 (323)
T TIGR03267 287 LTASVIGEVIEDG 299 (323)
T ss_pred CCEEEEEEEECCC
T ss_conf 9889999997598