HHsearch alignment for GI: 254780569 and conserved domain: TIGR03267

>TIGR03267 methan_mark_2 putative methanogenesis marker protein 2. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. Sequence similarity to various bacterial proteins is reflected in Pfam models pfam00586 and pfam02769, AIR synthase related protein N-terminal and C-terminal domains, respectively. The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=100.00  E-value=8.9e-38  Score=284.91  Aligned_cols=286  Identities=23%  Similarity=0.370  Sum_probs=220.5

Q ss_pred             HHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHH
Q ss_conf             90889899999999999998862673543667773157565544688718999568887899999982885501688888
Q gi|254780569|r   13 QAGVNIEAGNRTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKNDTIGIDLVA   92 (357)
Q Consensus        13 ~aGVdi~~~~~~v~~i~~~~~~t~~~~v~~~ig~f~~~~~l~~~~~~~p~Lv~~tDGVGTK~~ia~~~~~~~~ig~Dlva   92 (357)
T Consensus        12 ~~g~~~k~~~~~~~~~~~~~~~~~~~~~vvgpGdDAavi~i~~----~~~~~~~~d~~~~~~~~~---dPy-~gG~~aVa   83 (323)
T TIGR03267        12 FEGVTRKHPIKDVVEILEPLDVTYEGNVIVDFGDDAAAIKIGG----DDILLLAADGIWGKLLDA---DPW-WAGYCAVL   83 (323)
T ss_pred             CCCCHHCCCHHHHHHHHHHCCCCCCCCEEECCCCCEEEEEECC----CCEEEEEECCCCCCCCCC---CHH-HHHHHHHH
T ss_conf             8783100598999999864334558875424798606998789----858999976778875146---978-98999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHCCCCCCCCCCC-EEEEEEEEECCCC
Q ss_conf             543467885411221100000332037899999999999998609522143010000013655663-3689999741542
Q gi|254780569|r   93 MCVNDILTHGAEPLFFLDYLATSQLNPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYD-LAGFAVGAVERKE  171 (357)
Q Consensus        93 m~vNDi~~~GA~Pl~fldyia~~~l~~~~~~~ii~gi~~~c~~~g~~liGGETAemP~vy~~~~~D-lag~~vG~v~k~~  171 (357)
T Consensus        84 ~~v~DIaamGA~Pla~ld~L~~~--~pe~~~~i~~Gi~~a~~~~gvpvVGG~t--~~~----~~~~~v~v~vvGiv~~~~  155 (323)
T TIGR03267        84 VNVNDIAAMGGKPVGMVNVLSIN--DVDVCREVLEGMREGAWKFGVPVVGGHT--HPD----TPYNALDVAIVGIAKEDC  155 (323)
T ss_pred             HHHHHHHHHCCCHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHCCCCEECCCC--CCC----CCCCEEEEEEEEEECCCC
T ss_conf             99888998087618863022679--8789999999999999874997766734--568----887705899999874111


Q ss_pred             CCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf             11333455524899953865543232034444553115545667666663066875397201226888876304632222
Q gi|254780569|r  172 LLSPENVCAGDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKIKAL  251 (357)
Q Consensus       172 ii~~~~i~~GD~IIgl~SsG~HsNGySLvRkil~~~~~~~~~~~~~~~~~tl~e~LL~PtriY~~~i~~ll~~~~~i~~~  251 (357)
T Consensus       156 ~i~~~~a~~GD~ii~~~~---------l~g~~~~~~~~~~~~~~~-~~-----~~~~~~~---~~~~~~l~~~-~lv~a~  216 (323)
T TIGR03267       156 IIRSDTAKPGDLIIFAID---------LDGRPYPSFPLNWDTTTM-KS-----PDYLRAQ---MDAVVEIAER-KLVKAG  216 (323)
T ss_pred             EEECCCCCCCCEEEEEEC---------CCCCCCCCCCCCCCCCCC-CC-----HHHHHHH---HHHHHHHHHH-HHHHHH
T ss_conf             454478999999999964---------676116455344310134-67-----4777888---9989999986-678766


Q ss_pred             CCCCCCHHHHCCCCCC-CCCEEEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHCC
Q ss_conf             3454201220120025-443047871004898679999999669898898765246711699986898999999999779
Q gi|254780569|r  252 AHITGGGLTENIPRAI-PAHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQENN  330 (357)
Q Consensus       252 ahITGGGl~~nL~RiL-p~gl~a~Id~~~~p~p~iF~~I~~~g~I~~~EM~rtFNmGiGmvlvV~~e~a~~v~~~l~~~g  330 (357)
T Consensus       217 ~DiS~gGL~~~l~em~~~s~~Ga~I~l~~iP~~~~---------~~~~~~l~~~~-~~~~l~tv~~~~~~~i~~~~~~~g  286 (323)
T TIGR03267       217 KDISNPGLIGTLGMLLEASRVGAEVDLESIPKPED---------VDMVTWLKMYP-GSGFVLTADPENVREIVRVLEDAG  286 (323)
T ss_pred             HHCCCCCHHHHHHHHHHHCCCCEEEEHHHCCCCCC---------CCHHHHHHHCC-CCCEEEEECHHHHHHHHHHHHHCC
T ss_conf             41264716779999986448837997531888889---------99999998489-983899986503999999999879


Q ss_pred             CCEEEEEEEEECC
Q ss_conf             9808999999778
Q gi|254780569|r  331 ENIILIGEVTQRS  343 (357)
Q Consensus       331 ~~a~iIG~V~~~~  343 (357)
T Consensus       287 i~~~vIG~Vt~~~  299 (323)
T TIGR03267       287 LTASVIGEVIEDG  299 (323)
T ss_pred             CCEEEEEEEECCC
T ss_conf             9889999997598