HHsearch alignment for GI: 254780569 and conserved domain: cd02197

>cd02197 HypE HypE (Hydrogenase expression/formation protein). HypE is involved in Ni-Fe hydrogenase biosynthesis. HypE dehydrates its own carbamoyl moiety in an ATP-dependent process to yield the enzyme thiocyanate. The N-terminal domain of HypE is related to the ATP-binding domains of the AIR synthases, selenophosphate synthetase (SelD), and FGAM synthase and is thought to bind ATP.
Probab=100.00  E-value=3e-39  Score=295.25  Aligned_cols=285  Identities=19%  Similarity=0.243  Sum_probs=223.5

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             99999999988626735436677731575655446887189995688878999999828855016888885434678854
Q gi|254780569|r   23 RTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHG  102 (357)
Q Consensus        23 ~~v~~i~~~~~~t~~~~v~~~ig~f~~~~~l~~~~~~~p~Lv~~tDGVGTK~~ia~~~~~~~~ig~Dlvam~vNDi~~~G  102 (357)
T Consensus         5 ~~~~~i~~~~~~~~~~~~l-gigdDaAvi~~~~~-----~lvvttD~~----v~~p~~f~~~diG~~Av~~~~sDIaamG   74 (293)
T cd02197           5 LMQELIEELFLKAFDNPIL-EVLEDAAALLVGGG-----RLAFTTDSF----VVSPLFFPGGDIGKLAVCGTVNDLAMMG   74 (293)
T ss_pred             HHHHHHHHHHHHHCCCCCC-CCCCCEEEECCCCC-----EEEEEECCC----CCCCCCCCCCCHHHHHHHCCHHHHHHCC
T ss_conf             5999999998863698667-88887698616998-----499993654----2277528984473787521287898659


Q ss_pred             HHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHCCCEECCCCHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCC
Q ss_conf             11221100000332-03789999999999999860952214301000001365566336899997415421133345552
Q gi|254780569|r  103 AEPLFFLDYLATSQ-LNPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAG  181 (357)
Q Consensus       103 A~Pl~fldyia~~~-l~~~~~~~ii~gi~~~c~~~g~~liGGETAemP~vy~~~~~Dlag~~vG~v~k~~ii~~~~i~~G  181 (357)
T Consensus        75 a~P~~~l~sl~lp~~~~~~~l~~i~~Gi~~~~~~~gv~iVGGdT~v~~~~~~-~~l~is~t~iG~v~~~~~~~~~gA~pG  153 (293)
T cd02197          75 AKPLYLSLGFILEEGFPLEDLERIVKSMAEAAREAGVKIVTGDTKVVPKGKA-DGIFINTTGIGVIPRGVIISPSNIRPG  153 (293)
T ss_pred             CCCHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCEEEECCEEECCCCCC-CCEEEEEEEEEEECCCCCCCCCCCCCC
T ss_conf             9756763756558999999999999999999997197686166275147877-855998678898568855035789999


Q ss_pred             EEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf             48999538655432320344445531155456676666630668753972012268888763046322223454201220
Q gi|254780569|r  182 DLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGLTE  261 (357)
Q Consensus       182 D~IIgl~SsG~HsNGySLvRkil~~~~~~~~~~~~~~~~~tl~e~LL~PtriY~~~i~~ll~~~~~i~~~ahITGGGl~~  261 (357)
T Consensus       154 D~iivTg~lG~~g~~il~~r~~~-----~~~~~--------~----~~d~~~~~~~~~~~l~~~~~v~Am~DiT~gGL~~  216 (293)
T cd02197         154 DKIIVSGTIGDHGAAILAAREGL-----GFETD--------I----ESDCAPLNGLVEALLEAGPGIHAMRDPTRGGLAA  216 (293)
T ss_pred             CEEEEECCHHHHHHHHHHHHCCC-----CCCCH--------H----HHHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHH
T ss_conf             99999686078899999852466-----64401--------4----6666666899999997078744741679755999


Q ss_pred             CCCCCC-CCCEEEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHC--CCCEEEEEE
Q ss_conf             120025-44304787100489867999999966989889876524671169998689899999999977--998089999
Q gi|254780569|r  262 NIPRAI-PAHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQEN--NENIILIGE  338 (357)
Q Consensus       262 nL~RiL-p~gl~a~Id~~~~p~p~iF~~I~~~g~I~~~EM~rtFNmGiGmvlvV~~e~a~~v~~~l~~~--g~~a~iIG~  338 (357)
T Consensus       217 ~L~eia~aSgvg~~I~~~~iPv~~~v~~~~e~lg~DPl~~a---s~G-~ll~~v~~e~a~~vl~~l~~~~~G~~A~iIGe  292 (293)
T cd02197         217 VLNEIARASGVGIEIEEEAIPVREEVRGACEMLGLDPLYLA---NEG-KFVAIVPPEDAEEVLEALRSHPLGKEAAIIGE  292 (293)
T ss_pred             HHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCHHHHH---CCC-EEEEEECHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf             99999998599399940368888899999998593987883---485-39999878999999999972888998189866


Q ss_pred             E
Q ss_conf             9
Q gi|254780569|r  339 V  339 (357)
Q Consensus       339 V  339 (357)
T Consensus       293 V  293 (293)
T cd02197         293 V  293 (293)
T ss_pred             C
T ss_conf             9