HHsearch results for GI: 254780569 and protein with PDBid: 1vk3_A
>1vk3_A Phosphoribosylformylglycinamidine synthase II; TM1246, structural genomics, JCSG, PSI, protein structure initiative; 2.15A {Thermotoga maritima} SCOP: d.79.4.1 d.79.4.1 d.139.1.1 d.139.1.1 PDB: 3d54_A* 2hs3_A* 2hs0_A* 2hs4_A* 2hru_A* 2hry_A*
Probab=97.72 E-value=0.00015 Score=50.55 Aligned_cols=179 Identities=14% Similarity=0.176 Sum_probs=105.2
Q ss_pred CCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH--HHHHH
Q ss_conf 7731575655446887189995688878999999828855016888885434678854112211000003320--37899
Q gi|254780569|r 45 GGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQL--NPDQA 122 (357)
Q Consensus 45 g~f~~~~~l~~~~~~~p~Lv~~tDGVGTK~~ia~~~~~~~~ig~Dlvam~vNDi~~~GA~Pl~fldyia~~~l--~~~~~ 122 (357)
+.-+++.++... --++.++|.--.. +. .+-|. =+.-.|+=++-.++|+||+|+...|..-.+.. ++..+
T Consensus 398 ~~~a~v~~~~~~----~g~a~~~~~~p~~---~~-~dp~~-ga~~aV~Ea~~Nlva~ga~~~~i~~~~Nf~~p~~~~~~~ 468 (615)
T 1vk3_A 398 GFGAAVMRIKRD----GGYSLVTHSRADL---AL-QDTYW-GTLIAVLESVRKTLSVGAEPLAITNCVNYGDPDVDPVGL 468 (615)
T ss_dssp GGSCEEEEEETT----EEEEEEEECCHHH---HT-TCHHH-HHHHHHHHHHHHHHHTTCEEEEEEEEEECSCTTTCHHHH
T ss_pred CCCCCCEEECCC----CCEEEECCCCCCC---CC-CCHHH-HHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHH
T ss_conf 865433010368----8606846778874---35-68788-999999999999874478756644787647933484789
Q ss_pred HHHHHHHHHHHHHCCCEECCCCHHHCCCCCCC---CCC--CEEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf 99999999999860952214301000001365---566--3368999974154211333455524899953865543232
Q gi|254780569|r 123 TSIIKGIAAGCCQAGCALIGGETAEMPGLYHD---RDY--DLAGFAVGAVERKELLSPENVCAGDLILGLPSSGLHSNGF 197 (357)
Q Consensus 123 ~~ii~gi~~~c~~~g~~liGGETAemP~vy~~---~~~--Dlag~~vG~v~k~~ii~~~~i~~GD~IIgl~SsG~HsNGy 197 (357)
.+.++++.++|+..|++++||-- .+|.+ ... -+.-+++|.++..++++ .+||.|+-+.-+-
T Consensus 469 ~~~~~al~~~~~~l~ipiigGkd----Sl~n~~~~~~IppTlvi~avg~v~~~~~~~----~~~~~i~lvG~~~------ 534 (615)
T 1vk3_A 469 SAMMTALKNACEFSGVPVASGNA----SLYNTYQGKPIPPTLVVGMLGKVNPQKVAK----PKPSKVFAVGWND------ 534 (615)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEE----ECCCEETTEECCCEEEEEEEEEECGGGCCC----CCSEEEEEEEESS------
T ss_pred HHHHHHHHHHHHHHCCCCCCCCC----CCCCCCCCCCCCCCCEEEEEEEECCCEEEC----CCCCEEEEECCCC------
T ss_conf 99999999999983989455871----454753894279873899999723100456----8999899978988------
Q ss_pred CHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHH-CCCCCC-CCCEEEEE
Q ss_conf 0344445531155456676666630668753972012268888763046322223454201220-120025-44304787
Q gi|254780569|r 198 ALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGLTE-NIPRAI-PAHLTASI 275 (357)
Q Consensus 198 SLvRkil~~~~~~~~~~~~~~~~~tl~e~LL~PtriY~~~i~~ll~~~~~i~~~ahITGGGl~~-nL~RiL-p~gl~a~I 275 (357)
.+ |... +...+.+.+++.+ +.+++.-||+.- -+..++ ..|+++.+
T Consensus 535 -----------~d------------l~~~-----k~~~~~i~~li~~-----~~hd~S~GGl~~~~~~~~~~~~G~gi~i 581 (615)
T 1vk3_A 535 -----------FE------------LERE-----KELWRAIRKLSEE-----GAFILSSSQLLTRTHVETFREYGLKIEV 581 (615)
T ss_dssp -----------CC------------HHHH-----HHHHHHHHHHHHT-----TCEEECCTTSSCHHHHHHHHHTTCEEEE
T ss_pred -----------CC------------HHHH-----HHHHHHHHHHHHC-----CCEEEECCHHHHHHHHHHHHCCCCEEEE
T ss_conf -----------88------------8999-----9999999999962-----8978867748999999998657976899
Q ss_pred CCCC
Q ss_conf 1004
Q gi|254780569|r 276 NLNS 279 (357)
Q Consensus 276 d~~~ 279 (357)
+...
T Consensus 582 ~l~~ 585 (615)
T 1vk3_A 582 KLPE 585 (615)
T ss_dssp CCCC
T ss_pred EECC
T ss_conf 8378