HHsearch results for GI: 254780569 and protein with PDBid: 1vk3_A

>1vk3_A Phosphoribosylformylglycinamidine synthase II; TM1246, structural genomics, JCSG, PSI, protein structure initiative; 2.15A {Thermotoga maritima} SCOP: d.79.4.1 d.79.4.1 d.139.1.1 d.139.1.1 PDB: 3d54_A* 2hs3_A* 2hs0_A* 2hs4_A* 2hru_A* 2hry_A*
Probab=97.72  E-value=0.00015  Score=50.55  Aligned_cols=179  Identities=14%  Similarity=0.176  Sum_probs=105.2

Q ss_pred             CCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH--HHHHH
Q ss_conf             7731575655446887189995688878999999828855016888885434678854112211000003320--37899
Q gi|254780569|r   45 GGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQL--NPDQA  122 (357)
Q Consensus        45 g~f~~~~~l~~~~~~~p~Lv~~tDGVGTK~~ia~~~~~~~~ig~Dlvam~vNDi~~~GA~Pl~fldyia~~~l--~~~~~  122 (357)
                      +.-+++.++...    --++.++|.--..   +. .+-|. =+.-.|+=++-.++|+||+|+...|..-.+..  ++..+
T Consensus       398 ~~~a~v~~~~~~----~g~a~~~~~~p~~---~~-~dp~~-ga~~aV~Ea~~Nlva~ga~~~~i~~~~Nf~~p~~~~~~~  468 (615)
T 1vk3_A          398 GFGAAVMRIKRD----GGYSLVTHSRADL---AL-QDTYW-GTLIAVLESVRKTLSVGAEPLAITNCVNYGDPDVDPVGL  468 (615)
T ss_dssp             GGSCEEEEEETT----EEEEEEEECCHHH---HT-TCHHH-HHHHHHHHHHHHHHHTTCEEEEEEEEEECSCTTTCHHHH
T ss_pred             CCCCCCEEECCC----CCEEEECCCCCCC---CC-CCHHH-HHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHH
T ss_conf             865433010368----8606846778874---35-68788-999999999999874478756644787647933484789


Q ss_pred             HHHHHHHHHHHHHCCCEECCCCHHHCCCCCCC---CCC--CEEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf             99999999999860952214301000001365---566--3368999974154211333455524899953865543232
Q gi|254780569|r  123 TSIIKGIAAGCCQAGCALIGGETAEMPGLYHD---RDY--DLAGFAVGAVERKELLSPENVCAGDLILGLPSSGLHSNGF  197 (357)
Q Consensus       123 ~~ii~gi~~~c~~~g~~liGGETAemP~vy~~---~~~--Dlag~~vG~v~k~~ii~~~~i~~GD~IIgl~SsG~HsNGy  197 (357)
                      .+.++++.++|+..|++++||--    .+|.+   ...  -+.-+++|.++..++++    .+||.|+-+.-+-      
T Consensus       469 ~~~~~al~~~~~~l~ipiigGkd----Sl~n~~~~~~IppTlvi~avg~v~~~~~~~----~~~~~i~lvG~~~------  534 (615)
T 1vk3_A          469 SAMMTALKNACEFSGVPVASGNA----SLYNTYQGKPIPPTLVVGMLGKVNPQKVAK----PKPSKVFAVGWND------  534 (615)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEEE----ECCCEETTEECCCEEEEEEEEEECGGGCCC----CCSEEEEEEEESS------
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCC----CCCCCCCCCCCCCCCEEEEEEEECCCEEEC----CCCCEEEEECCCC------
T ss_conf             99999999999983989455871----454753894279873899999723100456----8999899978988------


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHH-CCCCCC-CCCEEEEE
Q ss_conf             0344445531155456676666630668753972012268888763046322223454201220-120025-44304787
Q gi|254780569|r  198 ALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGLTE-NIPRAI-PAHLTASI  275 (357)
Q Consensus       198 SLvRkil~~~~~~~~~~~~~~~~~tl~e~LL~PtriY~~~i~~ll~~~~~i~~~ahITGGGl~~-nL~RiL-p~gl~a~I  275 (357)
                                 .+            |...     +...+.+.+++.+     +.+++.-||+.- -+..++ ..|+++.+
T Consensus       535 -----------~d------------l~~~-----k~~~~~i~~li~~-----~~hd~S~GGl~~~~~~~~~~~~G~gi~i  581 (615)
T 1vk3_A          535 -----------FE------------LERE-----KELWRAIRKLSEE-----GAFILSSSQLLTRTHVETFREYGLKIEV  581 (615)
T ss_dssp             -----------CC------------HHHH-----HHHHHHHHHHHHT-----TCEEECCTTSSCHHHHHHHHHTTCEEEE
T ss_pred             -----------CC------------HHHH-----HHHHHHHHHHHHC-----CCEEEECCHHHHHHHHHHHHCCCCEEEE
T ss_conf             -----------88------------8999-----9999999999962-----8978867748999999998657976899


Q ss_pred             CCCC
Q ss_conf             1004
Q gi|254780569|r  276 NLNS  279 (357)
Q Consensus       276 d~~~  279 (357)
                      +...
T Consensus       582 ~l~~  585 (615)
T 1vk3_A          582 KLPE  585 (615)
T ss_dssp             CCCC
T ss_pred             EECC
T ss_conf             8378