RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780569|ref|YP_003064982.1| phosphoribosylaminoimidazole synthetase [Candidatus Liberibacter asiaticus str. psy62] (357 letters) >gnl|CDD|180049 PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional. Length = 327 Score = 523 bits (1351), Expect = e-149 Identities = 190/331 (57%), Positives = 240/331 (72%), Gaps = 4/331 (1%) Query: 9 LTYGQAGVNIEAGNRTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVDPILVSSSD 68 LTY AGV+IEAGN V +IK AVK T R +G +GGFGGLFDL K G+ +P+LVS +D Sbjct: 1 LTYKDAGVDIEAGNELVERIKPAVKRTFRPEVLGGLGGFGGLFDLPK-GYKEPVLVSGTD 59 Query: 69 GVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQLNPDQATSIIKG 128 GVGTKLK+AI+ GK+DTIGIDLVAMCVND+L GAEPLFFLDY+AT +L+P+ A ++KG Sbjct: 60 GVGTKLKLAIDLGKHDTIGIDLVAMCVNDLLVQGAEPLFFLDYIATGKLDPEVAAQVVKG 119 Query: 129 IAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDLILGLP 188 IA GC QAGCALIGGETAEMPG+YH+ DYDLAGFAVG VE+ +++ V GD+++GL Sbjct: 120 IAEGCEQAGCALIGGETAEMPGMYHEGDYDLAGFAVGVVEKDKIIDGSKVKEGDVLIGLA 179 Query: 189 SSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKI 248 SSGLHSNG++LVRKI+ L D P +LGE LL PTRIYV P+L +L++ + Sbjct: 180 SSGLHSNGYSLVRKIL--EVLDLDDTLPELDGKTLGEELLEPTRIYVKPVLALLKE-VDV 236 Query: 249 KALAHITGGGLTENIPRAIPAHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTFNCGI 308 K +AHITGGG EN+PR +P L A I+ S VP I WL K +V+ E+ RTFN GI Sbjct: 237 KGMAHITGGGFIENLPRVLPEGLGAEIDKGSWPVPPIFKWLQKLGNVEEEEMYRTFNMGI 296 Query: 309 GMVIIVHPDNKDCIIKKFQENNENIILIGEV 339 GMV+IV P++ D + + E+ +IG V Sbjct: 297 GMVLIVPPEDADAALALLEAAGEDAWVIGRV 327 >gnl|CDD|162083 TIGR00878, purM, phosphoribosylaminoimidazole synthetase. This enzyme is found as a homodimeric monofunctional protein in prokaryotes and as part of a larger, multifunctional protein, sometimes with two copies of this enzyme in tandem, in eukaryotes. Length = 332 Score = 430 bits (1107), Expect = e-121 Identities = 172/334 (51%), Positives = 230/334 (68%), Gaps = 2/334 (0%) Query: 9 LTYGQAGVNIEAGNRTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVDPILVSSSD 68 +TY AGV+I+AGN V +IKS VK T+R +G +GGF GLFDL + +P+LVS +D Sbjct: 1 VTYADAGVDIDAGNEAVKRIKSLVKKTRRPEVMGGLGGFAGLFDLG-DKYKEPVLVSGTD 59 Query: 69 GVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQLNPDQATSIIKG 128 GVGTKL +A K+DTIGIDLVAM VND+L GAEPLFFLDYLA +L+P+ A+ I+KG Sbjct: 60 GVGTKLLVAEAMNKHDTIGIDLVAMNVNDLLVQGAEPLFFLDYLAVGKLDPEVASQIVKG 119 Query: 129 IAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDLILGLP 188 IA GC QAGCAL+GGETAEMPG+Y YDLAG AVG VE+ E+++ E V GD+++GL Sbjct: 120 IAEGCKQAGCALVGGETAEMPGMYRGGHYDLAGTAVGVVEKDEIITGEKVKPGDVLIGLG 179 Query: 189 SSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKI 248 SSG+HSNG +LVRK++ + +P +LGE LL PTRIYV P+L+++++ ++ Sbjct: 180 SSGIHSNGLSLVRKVLEDIAGLDYEDTPEDFGKTLGEELLEPTRIYVKPILELIKEV-EV 238 Query: 249 KALAHITGGGLTENIPRAIPAHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTFNCGI 308 LAHITGGGL ENIPR +P L A I+++S P I W+ + +V+ E+ RTFN G+ Sbjct: 239 HGLAHITGGGLLENIPRRLPDGLKAVIDMSSWPQPPIFKWIQEAGNVEEEEMYRTFNMGV 298 Query: 309 GMVIIVHPDNKDCIIKKFQENNENIILIGEVTQR 342 G V+IV + D + E +IGEV + Sbjct: 299 GFVVIVPEEEVDKALALLNARGEKAWVIGEVKKG 332 >gnl|CDD|178172 PLN02557, PLN02557, phosphoribosylformylglycinamidine cyclo-ligase. Length = 379 Score = 378 bits (973), Expect = e-105 Identities = 175/334 (52%), Positives = 228/334 (68%), Gaps = 19/334 (5%) Query: 8 GLTYGQAGVNIEAGNRTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVDPILVSSS 67 GLTY AGV+I+AG+ V +I IGGFGGLF F D LV+ + Sbjct: 58 GLTYKDAGVDIDAGSELVRRIAKMAPG---------IGGFGGLFP-----FGDSYLVAGT 103 Query: 68 DGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQLNPDQATSIIK 127 DGVGTKLK+A ETG +DTIGIDLVAM VNDI+T GA+PLFFLDY ATS L+ D A +IK Sbjct: 104 DGVGTKLKLAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHLDVDLAEKVIK 163 Query: 128 GIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDLILGL 187 GI GC Q+ CAL+GGETAEMPG Y + +YDL+GFAVG+V++ ++ +N+ AGD+++GL Sbjct: 164 GIVDGCQQSDCALLGGETAEMPGFYAEGEYDLSGFAVGSVKKDAVIDGKNIVAGDVLIGL 223 Query: 188 PSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGK 247 PSSG+HSNGF+LVR++++ S LS KD P +S ++GE L+ PT IYV +L I+ K G Sbjct: 224 PSSGVHSNGFSLVRRVLAKSGLSLKDQLPGASV-TIGEALMAPTVIYVKQVLDIISKGG- 281 Query: 248 IKALAHITGGGLTENIPRAIPAHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTFNCG 307 +K +AHITGGG T+NIPR P L A I S EVP + WL + +++ AE+ RTFN G Sbjct: 282 VKGIAHITGGGFTDNIPRVFPKGLGAKIRTGSWEVPPLFKWLQEAGNIEDAEMRRTFNMG 341 Query: 308 IGMVIIVHPDNKDCIIKKFQENNENIILIGEVTQ 341 IGMV++V P+ D I+ +E IGEV Sbjct: 342 IGMVLVVSPEAADRIL---EEGAYPAYRIGEVIN 372 >gnl|CDD|162329 TIGR01379, thiL, thiamine-monophosphate kinase. Proteins scoring between the trusted and noise cutoff for this model include short forms from the Thermoplasmas (which lack the N-terminal region) and a highly derived form from Campylobacter jejuni. Eukaryotes lack this enzyme, and add pyrophosphate from ATP to unphosphorylated thiamine in a single step. Length = 317 Score = 48.9 bits (117), Expect = 2e-06 Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 12/115 (10%) Query: 84 DTIGIDLVAMCVNDILTHGAEPLFFLDYLA-TSQLNPDQATSIIKGIAAGCCQAGCALIG 142 + +G VA+ ++D+ GA P +FL L S L+ + G+ Q G L+G Sbjct: 58 EDLGWKAVAVNLSDLAAMGATPKWFLLSLGLPSDLDEAWLEAFYDGLFECAKQYGVPLVG 117 Query: 143 GETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDLI-----LGLPSSGL 192 G+T P L + A+G + L GDL+ LG ++GL Sbjct: 118 GDTVSSPELV------VTVTAIGEAPKGRALLRSGAKPGDLVFVTGTLGDSAAGL 166 >gnl|CDD|180226 PRK05731, PRK05731, thiamine monophosphate kinase; Provisional. Length = 318 Score = 41.0 bits (97), Expect = 5e-04 Identities = 32/110 (29%), Positives = 44/110 (40%), Gaps = 20/110 (18%) Query: 89 DLVAMCVNDILTHGAEPLFFLDYLAT-SQLNPDQATSIIKGIAAGCCQAGCALIGGETAE 147 DL AM GA P FL LA L+ ++ G+ + G LIGG+T Sbjct: 73 DLAAM--------GARPAAFLLALALPKDLDEAWLEALADGLFELADRYGAELIGGDTTR 124 Query: 148 MPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDLI-----LGLPSSGL 192 P L ++ A+G V L GDL+ LG ++GL Sbjct: 125 GPDL------SISVTAIGDVPGGRALRRSGAKPGDLVAVTGTLGDSAAGL 168 >gnl|CDD|132311 TIGR03267, methan_mark_2, putative methanogenesis marker protein 2. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. Sequence similarity to various bacterial proteins is reflected in Pfam models pfam00586 and pfam02769, AIR synthase related protein N-terminal and C-terminal domains, respectively. The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis. Length = 323 Score = 39.0 bits (91), Expect = 0.002 Identities = 54/256 (21%), Positives = 106/256 (41%), Gaps = 45/256 (17%) Query: 91 VAMCVNDILTHGAEPLFFLDYLATSQLNPDQATSIIKGIAAGCCQAGCALIGGETAEMPG 150 V + VNDI G +P+ ++ L+ + + D +++G+ G + G ++GG T Sbjct: 82 VLVNVNDIAAMGGKPVGMVNVLSIN--DVDVCREVLEGMREGAWKFGVPVVGGHT----- 134 Query: 151 LYHDRDYDLAGFAVGAVERKE-LLSPENVCAGDLILGLPSSGLHSNGFALVRKIISLSQL 209 + D Y+ A+ + +++ ++ + GDLI+ L + L Sbjct: 135 -HPDTPYNALDVAIVGIAKEDCIIRSDTAKPGDLIIF---------AIDLDGRPYPSFPL 184 Query: 210 SWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGLTENIPRAIPA 269 +W D + + S L + V + L K GK I+ GL + + A Sbjct: 185 NW-DTTTMKSPDYLRAQMD----AVVEIAERKLVKAGK-----DISNPGLIGTLGMLLEA 234 Query: 270 -HLTASINLNSVEVPQ---IISWLSKKAHVKPAEVLRTFNCGIGMVIIVHPDNKDCIIKK 325 + A ++L S+ P+ +++WL + P G G V+ P+N I++ Sbjct: 235 SRVGAEVDLESIPKPEDVDMVTWLK----MYP---------GSGFVLTADPENVREIVRV 281 Query: 326 FQENNENIILIGEVTQ 341 ++ +IGEV + Sbjct: 282 LEDAGLTASVIGEVIE 297 >gnl|CDD|162510 TIGR01736, FGAM_synth_II, phosphoribosylformylglycinamidine synthase II. Phosphoribosylformylglycinamidine synthase is a single, long polypeptide in most Proteobacteria and eukarotes. Three proteins are required in Bacillus subtilis and many other species. This is the longest of the three and is designated PurL, phosphoribosylformylglycinamidine synthase II, or FGAM synthase II. Length = 715 Score = 36.5 bits (85), Expect = 0.010 Identities = 63/288 (21%), Positives = 112/288 (38%), Gaps = 66/288 (22%) Query: 95 VNDILTHGAEPLFFLDYLATSQLNPDQATSIIKGIAAGCCQAGCAL----IGGETAEMPG 150 + DIL+ GA P+ LD L L+ + + +G+ AG G + +GGE Sbjct: 98 LRDILSMGARPIALLDSLRFGPLDDPKNRYLFEGVVAGISDYGNRIGVPTVGGEV----- 152 Query: 151 LYHDRDYD----LAGFAVGAVERKELL-----SPENVCAGDLILGLPS---SGLHSNGFA 198 D Y+ + VG V + +++ P N L+L G+ FA Sbjct: 153 -EFDESYNGNPLVNVMCVGLVRKDDIVTGKAKGPGNK----LVLVGGKTGRDGIGGATFA 207 Query: 199 ---LVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKIKALAHIT 255 L + + + + P +E L E L TG +K + + Sbjct: 208 SEELSEEAEEEDRPAVQVGDPF-TEKLLIEATLE------------AVDTGLVKGIKDLG 254 Query: 256 GGGLTENIPR-AIPAHLTASINLNSVEVPQIISWLSKKAHVKPAEVL------RTFNCGI 308 GLT A L A I L+ +VP ++ + P E++ R Sbjct: 255 AAGLTSASSEMAAKGGLGAEIYLD--KVPL------REPGMTPYEIMLSESQER------ 300 Query: 309 GMVIIVHPDNKDCIIKKFQENNENIILIGEVTQRSEKSPPILYQGSLI 356 M+++V P++ + +++ F++ +IGEVT E + Y+G ++ Sbjct: 301 -MLLVVAPEDVEEVLEIFEKYELPASVIGEVT--DEGRIRLYYKGEVV 345 >gnl|CDD|162715 TIGR02124, hypE, hydrogenase expression/formation protein HypE. This family contains HypE (or HupE), a protein required for expression of catalytically active hydrogenase in many systems. It appears to be an accessory protein involved in maturation rather than a regulatory protein involved in expression. HypE shows considerable homology to the thiamine-monophosphate kinase ThiL (TIGR01379) and other enzymes. Length = 320 Score = 34.9 bits (81), Expect = 0.029 Identities = 41/175 (23%), Positives = 68/175 (38%), Gaps = 19/175 (10%) Query: 86 IGIDLVAMCVNDILTHGAEPLFFLDYLATSQLNP-DQATSIIKGIAAGCCQAGCALIGGE 144 IG V VND+ GA+PL+ + P + I+K +A +AG ++ G+ Sbjct: 53 IGKLAVCGTVNDVAVSGAKPLYLSCGFILEEGFPIEDLERIVKSMAEAARKAGVKIVTGD 112 Query: 145 TAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDLILGLPSSGLHSNGFALVRKII 204 T + D + + +G + +S N+ GD I+ + G H VR+ + Sbjct: 113 TKVVEKGKADGIF-INTTGIGVIPSGIPISAHNLQPGDKIIVSGTIGDHGAAILAVREGL 171 Query: 205 SLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGL 259 D +P+ + L ETLL + A+ T GGL Sbjct: 172 GFETNLESDCAPL---NGLVETLLN--------------AGPAVHAMRDATRGGL 209 >gnl|CDD|161898 TIGR00476, selD, selenium donor protein. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelD, known as selenophosphate synthetase, selenium donor protein, and selenide,water dikinase. SelD provides reduced selenium for the selenium transferase SelA. This protein itself contains selenocysteine in many species; any sequence not aligning to the beginning of the model is likely have selenocysteine residue incorrectly interpreted as a stop codon upstream of the given sequence. The SelD protein also provides selenophosphate for the enzyme tRNA 2-selenouridine synthase, which catalyzes a tRNA base modification. All genomes with SelD should make selenocysteine, selenouridine, or both. Length = 347 Score = 30.2 bits (68), Expect = 0.86 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 7/74 (9%) Query: 116 QLNPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLSP 175 +L + +I+G C +AG +L GG T P G G +E+++P Sbjct: 113 KLTIEVMREVIQGFKDACREAGTSLTGGHTILNPWPV------FGGAVTGVCPEEEVITP 166 Query: 176 ENVCAGD-LILGLP 188 GD LIL P Sbjct: 167 SGAQVGDVLILTKP 180 >gnl|CDD|178745 PLN03206, PLN03206, phosphoribosylformylglycinamidine synthase; Provisional. Length = 1307 Score = 30.1 bits (68), Expect = 1.0 Identities = 11/37 (29%), Positives = 19/37 (51%) Query: 304 FNCGIGMVIIVHPDNKDCIIKKFQENNENIILIGEVT 340 F +G+V+ V N D +++K +IG+VT Sbjct: 924 FAEELGLVLEVSRKNLDAVMEKLAAAGVTAEVIGQVT 960 >gnl|CDD|162749 TIGR02181, GRX_bact, Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides. Length = 79 Score = 29.1 bits (66), Expect = 2.0 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 13/46 (28%) Query: 20 AGNRTVTQIKSAVKSTKRAGTIGE--IGGFGGLFDLKKAGFVDPIL 63 +G RTV QI IG+ +GG L+ L + G +DP+L Sbjct: 45 SGRRTVPQI-----------FIGDVHVGGCDDLYALDREGKLDPLL 79 >gnl|CDD|130916 TIGR01857, FGAM-synthase, phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP. Length = 1239 Score = 29.0 bits (65), Expect = 2.0 Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 12/81 (14%) Query: 135 QAGCALIGGETAEMPGLYHDRDY--DLAGFAVGAVERKELLSPENVCAGDLIL------- 185 G IGG+ + M G + + L FAV + ++SPE AG+ I Sbjct: 769 DLGLPAIGGKDS-MSGTFEELTVPPTLISFAVTTANSRRVISPEFKAAGENIYLIPGQAL 827 Query: 186 --GLPSSGLHSNGFALVRKII 204 G L FA + ++I Sbjct: 828 EDGTIDFDLLKENFAQIEELI 848 >gnl|CDD|150429 pfam09754, PAC2, PAC2 family. This PAC2 (Proteasome assembly chaperone) family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 247 and 307 amino acids in length. These proteins function as a chaperone for the 26S proteasome. The 26S proteasome mediates ubiquitin-dependent proteolysis in eukaryotic cells. A number of studies including very recent ones have revealed that assembly of its 20S catalytic core particle is an ordered process that involves several conserved proteasome assembly chaperones (PACs). Two heterodimeric chaperones, PAC1-PAC2 and PAC3-PAC4, promote the assembly of rings composed of seven alpha subunits. Length = 177 Score = 28.4 bits (64), Expect = 3.2 Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 10/70 (14%) Query: 183 LILGLPSSGL----------HSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTR 232 LI G P +G S V +I S ++ P + G+ L P Sbjct: 1 LIEGFPDAGNVGQLAVDHLIESLEAEKVGEIDSDELFPFRGRRPQVTFDEGGKILWPPLE 60 Query: 233 IYVSPLLKIL 242 +Y +L Sbjct: 61 LYYLKDRDLL 70 >gnl|CDD|131955 TIGR02909, spore_YkwD, uncharacterized protein, YkwD family. Members of this protein family represent a subset of those belonging to Pfam family pfam00188 (SCP-like extracellular protein). Based on currently cuttoffs for this model, all member proteins are found in Bacteria capable of endospore formation. Members include a named but uncharacterized protein, YkwD of Bacillus subtilis. Only the C-terminal region is well-conserved and is included in the seed alignment for this model. Three members of this family have an N-terminal domain homologous to the spore coat assembly protein SafA. Length = 127 Score = 27.8 bits (62), Expect = 4.0 Identities = 12/27 (44%), Positives = 17/27 (62%) Query: 5 RKRGLTYGQAGVNIEAGNRTVTQIKSA 31 +K G++Y AG NI GN TV + +A Sbjct: 62 KKFGISYRMAGENIAYGNSTVEAVHNA 88 >gnl|CDD|177603 PHA03366, PHA03366, FGAM-synthase; Provisional. Length = 1304 Score = 27.7 bits (62), Expect = 5.5 Identities = 10/49 (20%), Positives = 19/49 (38%) Query: 309 GMVIIVHPDNKDCIIKKFQENNENIILIGEVTQRSEKSPPILYQGSLIL 357 G+VI V P + ++ + + N IG V + + +L Sbjct: 915 GVVIEVPPSHLSAVLTRLRSRNIICYPIGTVGPSGPSNTFSVSHNGTVL 963 >gnl|CDD|183967 PRK13310, PRK13310, N-acetyl-D-glucosamine kinase; Provisional. Length = 303 Score = 27.6 bits (62), Expect = 5.7 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 11/37 (29%) Query: 256 GGGL------TENIPRAIPAHLTASINLNSVEVPQII 286 GGGL E +P+ +P HL L VP+I Sbjct: 252 GGGLSNFDAIYEQLPKRLPRHL-----LPVARVPRIE 283 >gnl|CDD|179176 PRK00943, PRK00943, selenophosphate synthetase; Provisional. Length = 347 Score = 27.5 bits (62), Expect = 5.8 Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 9/95 (9%) Query: 97 DILTHGAEPLFFLDYLA--TSQLNPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHD 154 DI G +P+ + L ++L P+ A +++G A C QAG L GG + + P + Sbjct: 91 DIYAMGGKPIMAIAILGWPINKLPPEVAREVLEGGRAACRQAGIPLAGGHSIDAP----E 146 Query: 155 RDYDLAGFAVGAVERKELLSPENVCAGD-LILGLP 188 + LA G V + + AGD L L P Sbjct: 147 PIFGLA--VTGVVPPERVKRNATAQAGDKLFLTKP 179 >gnl|CDD|184499 PRK14090, PRK14090, phosphoribosylformylglycinamidine synthase II; Provisional. Length = 601 Score = 27.1 bits (60), Expect = 7.0 Identities = 28/108 (25%), Positives = 42/108 (38%), Gaps = 10/108 (9%) Query: 95 VNDILTHGAEPLFFLDYLATSQLNPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHD 154 + D+L GA P D L S++ II+GIA G +GGE H+ Sbjct: 90 IRDVLAMGARPTAIFDSLHMSRI----IDGIIEGIADYGNSIGVPTVGGELRISSLYAHN 145 Query: 155 RDYDLAGFAVGAVERKELLSPENVCAGDLIL----GLPSSGLHSNGFA 198 ++ A G V L+ + G +I+ G+H FA Sbjct: 146 PLVNV--LAAGVVRNDMLVDSKASRPGQVIVIFGGATGRDGIHGASFA 191 >gnl|CDD|162549 TIGR01828, pyru_phos_dikin, pyruvate, phosphate dikinase. This model represents pyruvate,phosphate dikinase, also called pyruvate,orthophosphate dikinase. It is similar in sequence to other PEP-utilizing enzymes. Length = 856 Score = 27.3 bits (61), Expect = 7.0 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 20/68 (29%) Query: 59 VDPILVSSSDGVGTKLKIAIETGK----NDTIGIDLVAMCVNDILTHGAEP---LFF--- 108 DP GVG +++A+E G+ N +GI C HG +P F Sbjct: 792 KDPFESLDQTGVGQLMRMAVEKGRQTRPNLKVGI-----CGE----HGGDPSSIEFCHKI 842 Query: 109 -LDYLATS 115 L+Y++ S Sbjct: 843 GLNYVSCS 850 >gnl|CDD|182804 PRK10879, PRK10879, proline aminopeptidase P II; Provisional. Length = 438 Score = 27.0 bits (60), Expect = 8.5 Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%) Query: 232 RIYVSPL-LKILRKTGKIKALAHI 254 R++ SP + +LR+ G+I ALAH Sbjct: 171 RLFKSPEEIAVLRRAGEISALAHT 194 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.318 0.137 0.398 Gapped Lambda K H 0.267 0.0636 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 5,823,830 Number of extensions: 379272 Number of successful extensions: 658 Number of sequences better than 10.0: 1 Number of HSP's gapped: 644 Number of HSP's successfully gapped: 28 Length of query: 357 Length of database: 5,994,473 Length adjustment: 94 Effective length of query: 263 Effective length of database: 3,963,321 Effective search space: 1042353423 Effective search space used: 1042353423 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 58 (26.3 bits)