RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780569|ref|YP_003064982.1| phosphoribosylaminoimidazole
synthetase [Candidatus Liberibacter asiaticus str. psy62]
         (357 letters)



>gnl|CDD|180049 PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase;
           Provisional.
          Length = 327

 Score =  523 bits (1351), Expect = e-149
 Identities = 190/331 (57%), Positives = 240/331 (72%), Gaps = 4/331 (1%)

Query: 9   LTYGQAGVNIEAGNRTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVDPILVSSSD 68
           LTY  AGV+IEAGN  V +IK AVK T R   +G +GGFGGLFDL K G+ +P+LVS +D
Sbjct: 1   LTYKDAGVDIEAGNELVERIKPAVKRTFRPEVLGGLGGFGGLFDLPK-GYKEPVLVSGTD 59

Query: 69  GVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQLNPDQATSIIKG 128
           GVGTKLK+AI+ GK+DTIGIDLVAMCVND+L  GAEPLFFLDY+AT +L+P+ A  ++KG
Sbjct: 60  GVGTKLKLAIDLGKHDTIGIDLVAMCVNDLLVQGAEPLFFLDYIATGKLDPEVAAQVVKG 119

Query: 129 IAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDLILGLP 188
           IA GC QAGCALIGGETAEMPG+YH+ DYDLAGFAVG VE+ +++    V  GD+++GL 
Sbjct: 120 IAEGCEQAGCALIGGETAEMPGMYHEGDYDLAGFAVGVVEKDKIIDGSKVKEGDVLIGLA 179

Query: 189 SSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKI 248
           SSGLHSNG++LVRKI+    L   D  P     +LGE LL PTRIYV P+L +L++   +
Sbjct: 180 SSGLHSNGYSLVRKIL--EVLDLDDTLPELDGKTLGEELLEPTRIYVKPVLALLKE-VDV 236

Query: 249 KALAHITGGGLTENIPRAIPAHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTFNCGI 308
           K +AHITGGG  EN+PR +P  L A I+  S  VP I  WL K  +V+  E+ RTFN GI
Sbjct: 237 KGMAHITGGGFIENLPRVLPEGLGAEIDKGSWPVPPIFKWLQKLGNVEEEEMYRTFNMGI 296

Query: 309 GMVIIVHPDNKDCIIKKFQENNENIILIGEV 339
           GMV+IV P++ D  +   +   E+  +IG V
Sbjct: 297 GMVLIVPPEDADAALALLEAAGEDAWVIGRV 327


>gnl|CDD|162083 TIGR00878, purM, phosphoribosylaminoimidazole synthetase.  This
           enzyme is found as a homodimeric monofunctional protein
           in prokaryotes and as part of a larger, multifunctional
           protein, sometimes with two copies of this enzyme in
           tandem, in eukaryotes.
          Length = 332

 Score =  430 bits (1107), Expect = e-121
 Identities = 172/334 (51%), Positives = 230/334 (68%), Gaps = 2/334 (0%)

Query: 9   LTYGQAGVNIEAGNRTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVDPILVSSSD 68
           +TY  AGV+I+AGN  V +IKS VK T+R   +G +GGF GLFDL    + +P+LVS +D
Sbjct: 1   VTYADAGVDIDAGNEAVKRIKSLVKKTRRPEVMGGLGGFAGLFDLG-DKYKEPVLVSGTD 59

Query: 69  GVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQLNPDQATSIIKG 128
           GVGTKL +A    K+DTIGIDLVAM VND+L  GAEPLFFLDYLA  +L+P+ A+ I+KG
Sbjct: 60  GVGTKLLVAEAMNKHDTIGIDLVAMNVNDLLVQGAEPLFFLDYLAVGKLDPEVASQIVKG 119

Query: 129 IAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDLILGLP 188
           IA GC QAGCAL+GGETAEMPG+Y    YDLAG AVG VE+ E+++ E V  GD+++GL 
Sbjct: 120 IAEGCKQAGCALVGGETAEMPGMYRGGHYDLAGTAVGVVEKDEIITGEKVKPGDVLIGLG 179

Query: 189 SSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKI 248
           SSG+HSNG +LVRK++        + +P     +LGE LL PTRIYV P+L+++++  ++
Sbjct: 180 SSGIHSNGLSLVRKVLEDIAGLDYEDTPEDFGKTLGEELLEPTRIYVKPILELIKEV-EV 238

Query: 249 KALAHITGGGLTENIPRAIPAHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTFNCGI 308
             LAHITGGGL ENIPR +P  L A I+++S   P I  W+ +  +V+  E+ RTFN G+
Sbjct: 239 HGLAHITGGGLLENIPRRLPDGLKAVIDMSSWPQPPIFKWIQEAGNVEEEEMYRTFNMGV 298

Query: 309 GMVIIVHPDNKDCIIKKFQENNENIILIGEVTQR 342
           G V+IV  +  D  +       E   +IGEV + 
Sbjct: 299 GFVVIVPEEEVDKALALLNARGEKAWVIGEVKKG 332


>gnl|CDD|178172 PLN02557, PLN02557, phosphoribosylformylglycinamidine cyclo-ligase.
          Length = 379

 Score =  378 bits (973), Expect = e-105
 Identities = 175/334 (52%), Positives = 228/334 (68%), Gaps = 19/334 (5%)

Query: 8   GLTYGQAGVNIEAGNRTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVDPILVSSS 67
           GLTY  AGV+I+AG+  V +I               IGGFGGLF      F D  LV+ +
Sbjct: 58  GLTYKDAGVDIDAGSELVRRIAKMAPG---------IGGFGGLFP-----FGDSYLVAGT 103

Query: 68  DGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQLNPDQATSIIK 127
           DGVGTKLK+A ETG +DTIGIDLVAM VNDI+T GA+PLFFLDY ATS L+ D A  +IK
Sbjct: 104 DGVGTKLKLAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHLDVDLAEKVIK 163

Query: 128 GIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDLILGL 187
           GI  GC Q+ CAL+GGETAEMPG Y + +YDL+GFAVG+V++  ++  +N+ AGD+++GL
Sbjct: 164 GIVDGCQQSDCALLGGETAEMPGFYAEGEYDLSGFAVGSVKKDAVIDGKNIVAGDVLIGL 223

Query: 188 PSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGK 247
           PSSG+HSNGF+LVR++++ S LS KD  P +S  ++GE L+ PT IYV  +L I+ K G 
Sbjct: 224 PSSGVHSNGFSLVRRVLAKSGLSLKDQLPGASV-TIGEALMAPTVIYVKQVLDIISKGG- 281

Query: 248 IKALAHITGGGLTENIPRAIPAHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTFNCG 307
           +K +AHITGGG T+NIPR  P  L A I   S EVP +  WL +  +++ AE+ RTFN G
Sbjct: 282 VKGIAHITGGGFTDNIPRVFPKGLGAKIRTGSWEVPPLFKWLQEAGNIEDAEMRRTFNMG 341

Query: 308 IGMVIIVHPDNKDCIIKKFQENNENIILIGEVTQ 341
           IGMV++V P+  D I+   +E       IGEV  
Sbjct: 342 IGMVLVVSPEAADRIL---EEGAYPAYRIGEVIN 372


>gnl|CDD|162329 TIGR01379, thiL, thiamine-monophosphate kinase.  Proteins scoring
           between the trusted and noise cutoff for this model
           include short forms from the Thermoplasmas (which lack
           the N-terminal region) and a highly derived form from
           Campylobacter jejuni. Eukaryotes lack this enzyme, and
           add pyrophosphate from ATP to unphosphorylated thiamine
           in a single step.
          Length = 317

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 12/115 (10%)

Query: 84  DTIGIDLVAMCVNDILTHGAEPLFFLDYLA-TSQLNPDQATSIIKGIAAGCCQAGCALIG 142
           + +G   VA+ ++D+   GA P +FL  L   S L+     +   G+     Q G  L+G
Sbjct: 58  EDLGWKAVAVNLSDLAAMGATPKWFLLSLGLPSDLDEAWLEAFYDGLFECAKQYGVPLVG 117

Query: 143 GETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDLI-----LGLPSSGL 192
           G+T   P L       +   A+G   +   L       GDL+     LG  ++GL
Sbjct: 118 GDTVSSPELV------VTVTAIGEAPKGRALLRSGAKPGDLVFVTGTLGDSAAGL 166


>gnl|CDD|180226 PRK05731, PRK05731, thiamine monophosphate kinase; Provisional.
          Length = 318

 Score = 41.0 bits (97), Expect = 5e-04
 Identities = 32/110 (29%), Positives = 44/110 (40%), Gaps = 20/110 (18%)

Query: 89  DLVAMCVNDILTHGAEPLFFLDYLAT-SQLNPDQATSIIKGIAAGCCQAGCALIGGETAE 147
           DL AM        GA P  FL  LA    L+     ++  G+     + G  LIGG+T  
Sbjct: 73  DLAAM--------GARPAAFLLALALPKDLDEAWLEALADGLFELADRYGAELIGGDTTR 124

Query: 148 MPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDLI-----LGLPSSGL 192
            P L       ++  A+G V     L       GDL+     LG  ++GL
Sbjct: 125 GPDL------SISVTAIGDVPGGRALRRSGAKPGDLVAVTGTLGDSAAGL 168


>gnl|CDD|132311 TIGR03267, methan_mark_2, putative methanogenesis marker protein 2.
            A single member of this protein family is found in each
           of the first ten complete genome sequences of archaeal
           methanogens, and nowhere else. Sequence similarity to
           various bacterial proteins is reflected in Pfam models
           pfam00586 and pfam02769, AIR synthase related protein
           N-terminal and C-terminal domains, respectively. The
           functions of proteins in this family are unknown, but
           their role is likely one essential to methanogenesis.
          Length = 323

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 54/256 (21%), Positives = 106/256 (41%), Gaps = 45/256 (17%)

Query: 91  VAMCVNDILTHGAEPLFFLDYLATSQLNPDQATSIIKGIAAGCCQAGCALIGGETAEMPG 150
           V + VNDI   G +P+  ++ L+ +  + D    +++G+  G  + G  ++GG T     
Sbjct: 82  VLVNVNDIAAMGGKPVGMVNVLSIN--DVDVCREVLEGMREGAWKFGVPVVGGHT----- 134

Query: 151 LYHDRDYDLAGFAVGAVERKE-LLSPENVCAGDLILGLPSSGLHSNGFALVRKIISLSQL 209
            + D  Y+    A+  + +++ ++  +    GDLI+             L  +      L
Sbjct: 135 -HPDTPYNALDVAIVGIAKEDCIIRSDTAKPGDLIIF---------AIDLDGRPYPSFPL 184

Query: 210 SWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGLTENIPRAIPA 269
           +W D + + S   L   +       V    + L K GK      I+  GL   +   + A
Sbjct: 185 NW-DTTTMKSPDYLRAQMD----AVVEIAERKLVKAGK-----DISNPGLIGTLGMLLEA 234

Query: 270 -HLTASINLNSVEVPQ---IISWLSKKAHVKPAEVLRTFNCGIGMVIIVHPDNKDCIIKK 325
             + A ++L S+  P+   +++WL     + P         G G V+   P+N   I++ 
Sbjct: 235 SRVGAEVDLESIPKPEDVDMVTWLK----MYP---------GSGFVLTADPENVREIVRV 281

Query: 326 FQENNENIILIGEVTQ 341
            ++      +IGEV +
Sbjct: 282 LEDAGLTASVIGEVIE 297


>gnl|CDD|162510 TIGR01736, FGAM_synth_II, phosphoribosylformylglycinamidine
           synthase II.  Phosphoribosylformylglycinamidine synthase
           is a single, long polypeptide in most Proteobacteria and
           eukarotes. Three proteins are required in Bacillus
           subtilis and many other species. This is the longest of
           the three and is designated PurL,
           phosphoribosylformylglycinamidine synthase II, or FGAM
           synthase II.
          Length = 715

 Score = 36.5 bits (85), Expect = 0.010
 Identities = 63/288 (21%), Positives = 112/288 (38%), Gaps = 66/288 (22%)

Query: 95  VNDILTHGAEPLFFLDYLATSQLNPDQATSIIKGIAAGCCQAGCAL----IGGETAEMPG 150
           + DIL+ GA P+  LD L    L+  +   + +G+ AG    G  +    +GGE      
Sbjct: 98  LRDILSMGARPIALLDSLRFGPLDDPKNRYLFEGVVAGISDYGNRIGVPTVGGEV----- 152

Query: 151 LYHDRDYD----LAGFAVGAVERKELL-----SPENVCAGDLILGLPS---SGLHSNGFA 198
              D  Y+    +    VG V + +++      P N     L+L        G+    FA
Sbjct: 153 -EFDESYNGNPLVNVMCVGLVRKDDIVTGKAKGPGNK----LVLVGGKTGRDGIGGATFA 207

Query: 199 ---LVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKIKALAHIT 255
              L  +     + + +   P  +E  L E  L                TG +K +  + 
Sbjct: 208 SEELSEEAEEEDRPAVQVGDPF-TEKLLIEATLE------------AVDTGLVKGIKDLG 254

Query: 256 GGGLTENIPR-AIPAHLTASINLNSVEVPQIISWLSKKAHVKPAEVL------RTFNCGI 308
             GLT      A    L A I L+  +VP       ++  + P E++      R      
Sbjct: 255 AAGLTSASSEMAAKGGLGAEIYLD--KVPL------REPGMTPYEIMLSESQER------ 300

Query: 309 GMVIIVHPDNKDCIIKKFQENNENIILIGEVTQRSEKSPPILYQGSLI 356
            M+++V P++ + +++ F++      +IGEVT   E    + Y+G ++
Sbjct: 301 -MLLVVAPEDVEEVLEIFEKYELPASVIGEVT--DEGRIRLYYKGEVV 345


>gnl|CDD|162715 TIGR02124, hypE, hydrogenase expression/formation protein HypE.
           This family contains HypE (or HupE), a protein required
           for expression of catalytically active hydrogenase in
           many systems. It appears to be an accessory protein
           involved in maturation rather than a regulatory protein
           involved in expression. HypE shows considerable homology
           to the thiamine-monophosphate kinase ThiL (TIGR01379)
           and other enzymes.
          Length = 320

 Score = 34.9 bits (81), Expect = 0.029
 Identities = 41/175 (23%), Positives = 68/175 (38%), Gaps = 19/175 (10%)

Query: 86  IGIDLVAMCVNDILTHGAEPLFFLDYLATSQLNP-DQATSIIKGIAAGCCQAGCALIGGE 144
           IG   V   VND+   GA+PL+        +  P +    I+K +A    +AG  ++ G+
Sbjct: 53  IGKLAVCGTVNDVAVSGAKPLYLSCGFILEEGFPIEDLERIVKSMAEAARKAGVKIVTGD 112

Query: 145 TAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDLILGLPSSGLHSNGFALVRKII 204
           T  +     D  + +    +G +     +S  N+  GD I+   + G H      VR+ +
Sbjct: 113 TKVVEKGKADGIF-INTTGIGVIPSGIPISAHNLQPGDKIIVSGTIGDHGAAILAVREGL 171

Query: 205 SLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGL 259
                   D +P+   + L ETLL                   + A+   T GGL
Sbjct: 172 GFETNLESDCAPL---NGLVETLLN--------------AGPAVHAMRDATRGGL 209


>gnl|CDD|161898 TIGR00476, selD, selenium donor protein.  In prokaryotes, the
           incorporation of selenocysteine as the 21st amino acid,
           encoded by TGA, requires several elements: SelC is the
           tRNA itself, SelD acts as a donor of reduced selenium,
           SelA modifies a serine residue on SelC into
           selenocysteine, and SelB is a selenocysteine-specific
           translation elongation factor. 3-prime or 5-prime
           non-coding elements of mRNA have been found as probable
           structures for directing selenocysteine incorporation.
           This model describes SelD, known as selenophosphate
           synthetase, selenium donor protein, and selenide,water
           dikinase. SelD provides reduced selenium for the
           selenium transferase SelA. This protein itself contains
           selenocysteine in many species; any sequence not
           aligning to the beginning of the model is likely have
           selenocysteine residue incorrectly interpreted as a stop
           codon upstream of the given sequence. The SelD protein
           also provides selenophosphate for the enzyme tRNA
           2-selenouridine synthase, which catalyzes a tRNA base
           modification. All genomes with SelD should make
           selenocysteine, selenouridine, or both.
          Length = 347

 Score = 30.2 bits (68), Expect = 0.86
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 7/74 (9%)

Query: 116 QLNPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLSP 175
           +L  +    +I+G    C +AG +L GG T   P           G   G    +E+++P
Sbjct: 113 KLTIEVMREVIQGFKDACREAGTSLTGGHTILNPWPV------FGGAVTGVCPEEEVITP 166

Query: 176 ENVCAGD-LILGLP 188
                GD LIL  P
Sbjct: 167 SGAQVGDVLILTKP 180


>gnl|CDD|178745 PLN03206, PLN03206, phosphoribosylformylglycinamidine synthase;
           Provisional.
          Length = 1307

 Score = 30.1 bits (68), Expect = 1.0
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 304 FNCGIGMVIIVHPDNKDCIIKKFQENNENIILIGEVT 340
           F   +G+V+ V   N D +++K         +IG+VT
Sbjct: 924 FAEELGLVLEVSRKNLDAVMEKLAAAGVTAEVIGQVT 960


>gnl|CDD|162749 TIGR02181, GRX_bact, Glutaredoxin, GrxC family.  This family of
          glutaredoxins includes the E. coli protein GrxC (Grx3)
          which appears to have a secondary role in reducing
          ribonucleotide reductase (in the absence of GrxA)
          possibly indicating a role in the reduction of other
          protein disulfides.
          Length = 79

 Score = 29.1 bits (66), Expect = 2.0
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 13/46 (28%)

Query: 20 AGNRTVTQIKSAVKSTKRAGTIGE--IGGFGGLFDLKKAGFVDPIL 63
          +G RTV QI            IG+  +GG   L+ L + G +DP+L
Sbjct: 45 SGRRTVPQI-----------FIGDVHVGGCDDLYALDREGKLDPLL 79


>gnl|CDD|130916 TIGR01857, FGAM-synthase, phosphoribosylformylglycinamidine
           synthase, clade II.  This model represents a
           single-molecule form of
           phosphoribosylformylglycinamidine synthase, also called
           FGAM synthase, an enzyme of purine de novo biosynthesis.
           This model represents a second clade of these enzymes
           found in Clostridia, Bifidobacteria and Streptococcus
           species. This enzyme performs the fourth step in IMP
           biosynthesis (the precursor of all purines) from PRPP.
          Length = 1239

 Score = 29.0 bits (65), Expect = 2.0
 Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 12/81 (14%)

Query: 135 QAGCALIGGETAEMPGLYHDRDY--DLAGFAVGAVERKELLSPENVCAGDLIL------- 185
             G   IGG+ + M G + +      L  FAV     + ++SPE   AG+ I        
Sbjct: 769 DLGLPAIGGKDS-MSGTFEELTVPPTLISFAVTTANSRRVISPEFKAAGENIYLIPGQAL 827

Query: 186 --GLPSSGLHSNGFALVRKII 204
             G     L    FA + ++I
Sbjct: 828 EDGTIDFDLLKENFAQIEELI 848


>gnl|CDD|150429 pfam09754, PAC2, PAC2 family.  This PAC2 (Proteasome assembly
           chaperone) family of proteins is found in bacteria,
           archaea and eukaryotes. Proteins in this family are
           typically between 247 and 307 amino acids in length.
           These proteins function as a chaperone for the 26S
           proteasome. The 26S proteasome mediates
           ubiquitin-dependent proteolysis in eukaryotic cells. A
           number of studies including very recent ones have
           revealed that assembly of its 20S catalytic core
           particle is an ordered process that involves several
           conserved proteasome assembly chaperones (PACs). Two
           heterodimeric chaperones, PAC1-PAC2 and PAC3-PAC4,
           promote the assembly of rings composed of seven alpha
           subunits.
          Length = 177

 Score = 28.4 bits (64), Expect = 3.2
 Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 10/70 (14%)

Query: 183 LILGLPSSGL----------HSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTR 232
           LI G P +G            S     V +I S     ++   P  +    G+ L  P  
Sbjct: 1   LIEGFPDAGNVGQLAVDHLIESLEAEKVGEIDSDELFPFRGRRPQVTFDEGGKILWPPLE 60

Query: 233 IYVSPLLKIL 242
           +Y      +L
Sbjct: 61  LYYLKDRDLL 70


>gnl|CDD|131955 TIGR02909, spore_YkwD, uncharacterized protein, YkwD family.
          Members of this protein family represent a subset of
          those belonging to Pfam family pfam00188 (SCP-like
          extracellular protein). Based on currently cuttoffs for
          this model, all member proteins are found in Bacteria
          capable of endospore formation. Members include a named
          but uncharacterized protein, YkwD of Bacillus subtilis.
          Only the C-terminal region is well-conserved and is
          included in the seed alignment for this model. Three
          members of this family have an N-terminal domain
          homologous to the spore coat assembly protein SafA.
          Length = 127

 Score = 27.8 bits (62), Expect = 4.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 5  RKRGLTYGQAGVNIEAGNRTVTQIKSA 31
          +K G++Y  AG NI  GN TV  + +A
Sbjct: 62 KKFGISYRMAGENIAYGNSTVEAVHNA 88


>gnl|CDD|177603 PHA03366, PHA03366, FGAM-synthase; Provisional.
          Length = 1304

 Score = 27.7 bits (62), Expect = 5.5
 Identities = 10/49 (20%), Positives = 19/49 (38%)

Query: 309 GMVIIVHPDNKDCIIKKFQENNENIILIGEVTQRSEKSPPILYQGSLIL 357
           G+VI V P +   ++ + +  N     IG V      +   +     +L
Sbjct: 915 GVVIEVPPSHLSAVLTRLRSRNIICYPIGTVGPSGPSNTFSVSHNGTVL 963


>gnl|CDD|183967 PRK13310, PRK13310, N-acetyl-D-glucosamine kinase; Provisional.
          Length = 303

 Score = 27.6 bits (62), Expect = 5.7
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 11/37 (29%)

Query: 256 GGGL------TENIPRAIPAHLTASINLNSVEVPQII 286
           GGGL       E +P+ +P HL     L    VP+I 
Sbjct: 252 GGGLSNFDAIYEQLPKRLPRHL-----LPVARVPRIE 283


>gnl|CDD|179176 PRK00943, PRK00943, selenophosphate synthetase; Provisional.
          Length = 347

 Score = 27.5 bits (62), Expect = 5.8
 Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 9/95 (9%)

Query: 97  DILTHGAEPLFFLDYLA--TSQLNPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHD 154
           DI   G +P+  +  L    ++L P+ A  +++G  A C QAG  L GG + + P    +
Sbjct: 91  DIYAMGGKPIMAIAILGWPINKLPPEVAREVLEGGRAACRQAGIPLAGGHSIDAP----E 146

Query: 155 RDYDLAGFAVGAVERKELLSPENVCAGD-LILGLP 188
             + LA    G V  + +       AGD L L  P
Sbjct: 147 PIFGLA--VTGVVPPERVKRNATAQAGDKLFLTKP 179


>gnl|CDD|184499 PRK14090, PRK14090, phosphoribosylformylglycinamidine synthase II;
           Provisional.
          Length = 601

 Score = 27.1 bits (60), Expect = 7.0
 Identities = 28/108 (25%), Positives = 42/108 (38%), Gaps = 10/108 (9%)

Query: 95  VNDILTHGAEPLFFLDYLATSQLNPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHD 154
           + D+L  GA P    D L  S++       II+GIA      G   +GGE        H+
Sbjct: 90  IRDVLAMGARPTAIFDSLHMSRI----IDGIIEGIADYGNSIGVPTVGGELRISSLYAHN 145

Query: 155 RDYDLAGFAVGAVERKELLSPENVCAGDLIL----GLPSSGLHSNGFA 198
              ++   A G V    L+  +    G +I+         G+H   FA
Sbjct: 146 PLVNV--LAAGVVRNDMLVDSKASRPGQVIVIFGGATGRDGIHGASFA 191


>gnl|CDD|162549 TIGR01828, pyru_phos_dikin, pyruvate, phosphate dikinase.  This
           model represents pyruvate,phosphate dikinase, also
           called pyruvate,orthophosphate dikinase. It is similar
           in sequence to other PEP-utilizing enzymes.
          Length = 856

 Score = 27.3 bits (61), Expect = 7.0
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 20/68 (29%)

Query: 59  VDPILVSSSDGVGTKLKIAIETGK----NDTIGIDLVAMCVNDILTHGAEP---LFF--- 108
            DP       GVG  +++A+E G+    N  +GI     C      HG +P    F    
Sbjct: 792 KDPFESLDQTGVGQLMRMAVEKGRQTRPNLKVGI-----CGE----HGGDPSSIEFCHKI 842

Query: 109 -LDYLATS 115
            L+Y++ S
Sbjct: 843 GLNYVSCS 850


>gnl|CDD|182804 PRK10879, PRK10879, proline aminopeptidase P II; Provisional.
          Length = 438

 Score = 27.0 bits (60), Expect = 8.5
 Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)

Query: 232 RIYVSPL-LKILRKTGKIKALAHI 254
           R++ SP  + +LR+ G+I ALAH 
Sbjct: 171 RLFKSPEEIAVLRRAGEISALAHT 194


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.318    0.137    0.398 

Gapped
Lambda     K      H
   0.267   0.0636    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,823,830
Number of extensions: 379272
Number of successful extensions: 658
Number of sequences better than 10.0: 1
Number of HSP's gapped: 644
Number of HSP's successfully gapped: 28
Length of query: 357
Length of database: 5,994,473
Length adjustment: 94
Effective length of query: 263
Effective length of database: 3,963,321
Effective search space: 1042353423
Effective search space used: 1042353423
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.3 bits)