RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780569|ref|YP_003064982.1| phosphoribosylaminoimidazole
synthetase [Candidatus Liberibacter asiaticus str. psy62]
         (357 letters)



>3m84_A Phosphoribosylformylglycinamidine cyclo-ligase; alpha-beta fold,
           csgid, ATP-binding, nucleotide-BIND purine biosynthesis;
           HET: MSE AMP TRS; 1.70A {Francisella tularensis subsp}
          Length = 350

 Score =  361 bits (928), Expect = e-100
 Identities = 135/346 (39%), Positives = 200/346 (57%), Gaps = 4/346 (1%)

Query: 4   ERKRGLTYGQAGVNIEAGNRTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKA--GFVDP 61
               GL Y  AGVNIEAGN+ V ++K  VK T     +  +G FG L+ LK     + DP
Sbjct: 2   NAMAGLKYEDAGVNIEAGNQAVERMKQHVKKTFTQDVLTGLGSFGSLYSLKNIINNYDDP 61

Query: 62  ILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQLNPDQ 121
           +LV S DGVGTK K+A+  GK + +G DL +   NDI+  GA+P+ FLDY+A  +L+P  
Sbjct: 62  VLVQSIDGVGTKTKVAVMCGKFENLGYDLFSAATNDIVVMGAKPITFLDYVAHDKLDPAI 121

Query: 122 ATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAG 181
              ++KG++  C + G +L+GGETAEMPG+Y   + D+ G   G V+RK +++ EN+  G
Sbjct: 122 MEELVKGMSKACAECGVSLVGGETAEMPGVYQAGEIDMVGVITGIVDRKRIINGENIKEG 181

Query: 182 DLILGLPSSGLHSNGFALVRKIIS-LSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLK 240
           D++ GL SSGLH+NG++  RK+   ++     D  P     ++G+ LL P   Y + +  
Sbjct: 182 DIVFGLSSSGLHTNGYSFARKLFFDVAGNKHTDTYPELEGKTIGDVLLEPHINYTNIIHD 241

Query: 241 ILRKTGKIKALAHITGGGLTENIPRAIPAHLTASINLNSVEVPQIISWLSKKAHVKPAEV 300
            L     IK +AHITGGG  ENIPR +P  L A I+ +S   P I   + +   +   E+
Sbjct: 242 FLDNGVDIKGMAHITGGGFIENIPRVLPQGLGAQIDKDSFATPAIFKLMQRIGDISEFEM 301

Query: 301 LRTFNCGIGMVIIVHPDNKDCIIKKFQEN-NENIILIGEVTQRSEK 345
            R+FN GIGM II   D  D + +  +++ N  +  IG++T   + 
Sbjct: 302 YRSFNMGIGMTIIASQDQFDKMQELAKKHTNTKLYQIGKITNSGKV 347


>3p4e_A Phosphoribosylformylglycinamidine cyclo-ligase; structural
           genomics, center for structural genomics of infec
           diseases, csgid; HET: AMP CIT; 1.77A {Vibrio cholerae}
           PDB: 1cli_A
          Length = 349

 Score =  344 bits (882), Expect = 3e-95
 Identities = 166/346 (47%), Positives = 223/346 (64%), Gaps = 5/346 (1%)

Query: 4   ERKRGLTYGQAGVNIEAGNRTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVDPIL 63
                L+Y  AGV+I+AGN  V +IK AVK T+R   +G +GGFG L +L    +  P+L
Sbjct: 6   GNNPSLSYKDAGVDIDAGNALVERIKGAVKRTRRPEVMGGLGGFGALCELPT-KYKHPVL 64

Query: 64  VSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQLNPDQAT 123
           VS +DGVGTKL++A++  K+DTIGIDLVAMCVND++  GAEPLFFLDY AT +L+ D A 
Sbjct: 65  VSGTDGVGTKLRLALDMKKHDTIGIDLVAMCVNDLIVQGAEPLFFLDYYATGKLDVDTAA 124

Query: 124 SIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDL 183
            +I GIA GC QAGCALIGGETAEMPG+Y   DYD+AGF VG VE++E++    V  GD 
Sbjct: 125 EVISGIADGCLQAGCALIGGETAEMPGMYEGEDYDVAGFCVGVVEKEEIIDGSKVQVGDA 184

Query: 184 ILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILR 243
           ++ + SSG HSNG++LVRKI+ +S+    +        ++GE LL PT+IY+   LK L 
Sbjct: 185 LIAVGSSGPHSNGYSLVRKILEVSKADKNERLA---GKTIGEHLLAPTKIYIKSGLK-LI 240

Query: 244 KTGKIKALAHITGGGLTENIPRAIPAHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRT 303
               I A++HITGGG  ENIPR +P    A I+  S E P I  WL +K +V   E+ RT
Sbjct: 241 AEHDIHAISHITGGGFWENIPRVLPEGTKAVIDGKSWEWPVIFQWLQEKGNVTTHEMYRT 300

Query: 304 FNCGIGMVIIVHPDNKDCIIKKFQENNENIILIGEVTQRSEKSPPI 349
           FNCG+G++I +  D  +  +   Q   E   +IGE+   +     +
Sbjct: 301 FNCGVGLIIALPKDQANAAVALLQAEGETAWVIGEIAAANSNEAQV 346


>1cli_A Protein (phosphoribosyl-aminoimidazole synthetase); AIR synthetase,
           PURM, purine biosynthesis, trifunctional enzyme, PURL;
           2.50A {Escherichia coli} SCOP: d.79.4.1 d.139.1.1
          Length = 345

 Score =  285 bits (730), Expect = 9e-78
 Identities = 161/345 (46%), Positives = 228/345 (66%), Gaps = 4/345 (1%)

Query: 6   KRGLTYGQAGVNIEAGNRTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVDPILVS 65
           K  L+Y  AGV+I+AGN  V +IK  VK T+R   +G +GGFG L  L +  + +P+LVS
Sbjct: 4   KTSLSYKDAGVDIDAGNALVGRIKGVVKKTRRPEVMGGLGGFGALCALPQ-KYREPVLVS 62

Query: 66  SSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQLNPDQATSI 125
            +DGVGTKL++A++  ++DTIGIDLVAMCVND++  GAEPLFFLDY AT +L+ D A+++
Sbjct: 63  GTDGVGTKLRLAMDLKRHDTIGIDLVAMCVNDLVVQGAEPLFFLDYYATGKLDVDTASAV 122

Query: 126 IKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDLIL 185
           I GIA GC Q+GC+L+GGETAEMPG+YH  DYD+AGF VG VE+ E++    V  GD+++
Sbjct: 123 ISGIAEGCLQSGCSLVGGETAEMPGMYHGEDYDVAGFCVGVVEKSEIIDGSKVSDGDVLI 182

Query: 186 GLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKT 245
            L SSG HSNG++LVRKI+ +S    +          L + LL PTRIYV  +L+ L + 
Sbjct: 183 ALGSSGPHSNGYSLVRKILEVSGCDPQTTEL--DGKPLADHLLAPTRIYVKSVLE-LIEK 239

Query: 246 GKIKALAHITGGGLTENIPRAIPAHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTFN 305
             + A+AH+TGGG  ENIPR +P +  A I+ +S + P++ +WL    +V+  E+ RTFN
Sbjct: 240 VDVHAIAHLTGGGFWENIPRVLPDNTQAVIDESSWQWPEVFNWLQTAGNVEHHEMYRTFN 299

Query: 306 CGIGMVIIVHPDNKDCIIKKFQENNENIILIGEVTQRSEKSPPIL 350
           CG+GM+I +     D  +     N EN   IG +     +   ++
Sbjct: 300 CGVGMIIALPAPEVDKALALLNANGENAWKIGIIKASDSEQRVVI 344


>3mdo_A Putative phosphoribosylformylglycinamidine cyclo-; structural
           genomics, joint center for structural genomics; HET: MSE
           PGE P6G PG4; 1.91A {Parabacteroides distasonis}
          Length = 389

 Score =  284 bits (727), Expect = 2e-77
 Identities = 75/387 (19%), Positives = 137/387 (35%), Gaps = 67/387 (17%)

Query: 10  TYGQAGVNI--EAGNRTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVDPILVSSS 67
            Y   GV+   E  +  +  I   +              F  +      G  +   +  +
Sbjct: 6   RYNLRGVSASKEDVHNAIKNIDKGIFP----------KAFCKIIPDILGGDPEYCNIMHA 55

Query: 68  DGVGTKLKIAIETGKN-------DTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQLNPD 120
           DG GTK  +A    K          I  D + M ++D+L  GA     +      +    
Sbjct: 56  DGAGTKSSLAYMYWKETGDLSVWKGIAQDALIMNIDDLLCVGAVDNILVSS-TIGRNKLL 114

Query: 121 QATSIIKGIAAGCCQA---------GCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKE 171
               +I  I  G  +          GC   GGETA++  L      D        ++R +
Sbjct: 115 VPGEVISAIINGTDELLAELREMGVGCYATGGETADVGDLVRTIIVDSTVTCR--MKRSD 172

Query: 172 LLSPENVCAGDLILGLPSS-----------GLHSNGFALVRKIISLSQLSWKDPSPISSE 220
           ++  +N+  GD+I+GL SS           G+ SNG    R  +    L+ K P    + 
Sbjct: 173 VIDNKNIQGGDVIVGLASSGQATYEKEYNGGMGSNGLTSARHDVFSKYLAKKYPESYDAA 232

Query: 221 H---------------------SLGETLLTPTRIYVSPLLKILRK-TGKIKALAHITGGG 258
                                   G+ +L+PTR Y   +  +L K   +I  + H +GG 
Sbjct: 233 VPKELVYSGGLKLTDKIEELGIDAGKMVLSPTRTYAPVIKVLLDKLRSQIHGMVHCSGGA 292

Query: 259 LTENIPRAIPAHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTFNCGIGMVIIVHPDN 318
            T+ +              N   +P +   + +++    +E+ + FN G  M I + P++
Sbjct: 293 QTKVMHFVENKR---VTKDNLFPIPPLFRTIQEQSGTDWSEMYKVFNMGHRMEIYIAPEH 349

Query: 319 KDCIIKKFQENNENIILIGEVTQRSEK 345
            + +I   +    +  ++G V +  + 
Sbjct: 350 AEEVIGISKSFGIDAQIVGFVEEADKN 376


>2z01_A Phosphoribosylformylglycinamidine cyclo-ligase; alpha and beta
           proteins, cytoplasm, purine biosynthesis, structural
           genomics, NPPSFA; 2.20A {Geobacillus kaustophilus}
          Length = 348

 Score =  279 bits (714), Expect = 7e-76
 Identities = 166/338 (49%), Positives = 222/338 (65%), Gaps = 1/338 (0%)

Query: 6   KRGLTYGQAGVNIEAGNRTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVDPILVS 65
                Y QAGV+IEAG + V  +K  V+ T R   +G IGGFGGLFDL   G+  P+L+S
Sbjct: 2   HMAKAYKQAGVDIEAGYQAVALMKEHVQKTMRPEVLGGIGGFGGLFDLSALGYRQPVLIS 61

Query: 66  SSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQLNPDQATSI 125
            +DGVGTKLK+A    ++DTIGID VAMCVNDI+  GAEPLFFLDY+A  +  P++  +I
Sbjct: 62  GTDGVGTKLKLAFLLDRHDTIGIDCVAMCVNDIIVQGAEPLFFLDYIACGKAVPEKIAAI 121

Query: 126 IKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDLIL 185
           +KG+A GC +AGCALIGGETAEMPG+Y + +YDLAGFAVG  E++ L++ E + AGD ++
Sbjct: 122 VKGVADGCVEAGCALIGGETAEMPGMYDEDEYDLAGFAVGVAEKERLITGETIQAGDALV 181

Query: 186 GLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKT 245
           GLPSSGLHSNG++LVR+I+        D      +  LGE LL PTRIY   L  +  + 
Sbjct: 182 GLPSSGLHSNGYSLVRRIVFEQAKLSLDEIYEPLDVPLGEELLKPTRIYAKLLRSVRER- 240

Query: 246 GKIKALAHITGGGLTENIPRAIPAHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTFN 305
             IK +AHITGGGL ENIPR +P  + A I L S  +  I  +L +K  ++  E+   FN
Sbjct: 241 FTIKGMAHITGGGLIENIPRMLPPGIGARIQLGSWPILPIFDFLREKGSLEEEEMFSVFN 300

Query: 306 CGIGMVIIVHPDNKDCIIKKFQENNENIILIGEVTQRS 343
            GIG+V+ V P+    +++   E  E   +IGEV + +
Sbjct: 301 MGIGLVLAVSPETAAPLVEWLSERGEPAYIIGEVAKGA 338


>2v9y_A Phosphoribosylformylglycinamidine cyclo-ligase; multifunctional
           enzyme, structural genomics consortium,
           nucleotide-binding, purine biosynthesis; 2.10A {Homo
           sapiens}
          Length = 334

 Score =  273 bits (698), Expect = 5e-74
 Identities = 161/315 (51%), Positives = 219/315 (69%), Gaps = 3/315 (0%)

Query: 43  EIGGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHG 102
           ++GGF GLFDLK AGF DP+L S +DGVGTKLKIA    K+DTIG DLVAMCVNDIL  G
Sbjct: 9   DLGGFAGLFDLKAAGFKDPLLASGTDGVGTKLKIAQLCNKHDTIGQDLVAMCVNDILAQG 68

Query: 103 AEPLFFLDYLATSQLNPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGF 162
           AEPLFFLDY +  +L+     +++ GIA  C +AGCAL+GGETAEMP +Y   +YDLAGF
Sbjct: 69  AEPLFFLDYFSCGKLDLSVTEAVVAGIAKACGKAGCALLGGETAEMPDMYPPGEYDLAGF 128

Query: 163 AVGAVERKEL-LSPENVCAGDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEH 221
           AVGA+ER +     E +  GD+++G+ SSGLHSNGF+LVRKI++ S L +  P+P     
Sbjct: 129 AVGAMERDQKLPHLERITEGDVVVGIASSGLHSNGFSLVRKIVAKSSLQYSSPAPDGCGD 188

Query: 222 -SLGETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGLTENIPRAIPAHLTASINLNSV 280
            +LG+ LLTPTRIY   LL +L ++G +KA AHITGGGL ENIPR +P  L   ++  + 
Sbjct: 189 QTLGDLLLTPTRIYSHSLLPVL-RSGHVKAFAHITGGGLLENIPRVLPEKLGVDLDAQTW 247

Query: 281 EVPQIISWLSKKAHVKPAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQENNENIILIGEVT 340
            +P++ SWL ++ H+   E+ RTFNCG+G V++V  +  + I++  Q++ E   +IG V 
Sbjct: 248 RIPRVFSWLQQEGHLSEEEMARTFNCGVGAVLVVSKEQTEQILRGIQQHKEEAWVIGSVV 307

Query: 341 QRSEKSPPILYQGSL 355
            R+E SP +  +  +
Sbjct: 308 ARAEGSPRVKVKNLI 322


>2btu_A Phosphoribosyl-aminoimidazole synthetase; synthase, PURM, de novo
           purine biosynthesis, AIR synthase family, spine, FGAR
           amidotransferase; 2.31A {Bacillus anthracis}
          Length = 346

 Score =  271 bits (693), Expect = 2e-73
 Identities = 163/348 (46%), Positives = 224/348 (64%), Gaps = 5/348 (1%)

Query: 10  TYGQAGVNIEAGNRTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVDPILVSSSDG 69
            Y QAGV+IEAG   V+++K  V++T R   +G +GGFGG+FDL K    +P+LVS +DG
Sbjct: 4   AYKQAGVDIEAGYEAVSRMKKHVQTTMRKEVLGGLGGFGGMFDLSKFALEEPVLVSGTDG 63

Query: 70  VGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQLNPDQATSIIKGI 129
           VGTKL +A    K+DTIGID VAMCVNDI+  GAEPLFFLDY+A  +  P +  +I+KGI
Sbjct: 64  VGTKLMLAFMADKHDTIGIDAVAMCVNDIVVQGAEPLFFLDYIACGKAEPSKIENIVKGI 123

Query: 130 AAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDLILGLPS 189
           + GC QAGCALIGGETAEMPG+Y   +YDLAGF VG V++K++++ E + AG +++GL S
Sbjct: 124 SEGCRQAGCALIGGETAEMPGMYSTEEYDLAGFTVGIVDKKKIVTGEKIEAGHVLIGLAS 183

Query: 190 SGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKIK 249
           SG+HSNG++LVRK++        D      E  LGE LL PT+IYV P +  L K  ++ 
Sbjct: 184 SGIHSNGYSLVRKVLLEDGELSLDRIYGRLELPLGEELLKPTKIYVKP-ILELLKNHEVY 242

Query: 250 ALAHITGGGLTENIPRAIPAHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTFNCGIG 309
            +AHITGGG  ENIPR +P  + A I L S ++  I S L +   ++  E+   FN GIG
Sbjct: 243 GMAHITGGGFIENIPRMLPEGIGAEIELGSWKIQPIFSLLQEVGKLEEKEMFNIFNMGIG 302

Query: 310 MVIIVHPDNKDCIIKKFQENNENIILIGEVTQRSEKSPPILYQGSLIL 357
           MV+ V  ++   I++  +E  E   +IG       +   + + G   L
Sbjct: 303 MVVAVKEEDAKDIVRLLEEQGETARIIGRTV----QGAGVTFNGGKAL 346


>3kiz_A Phosphoribosylformylglycinamidine cyclo-ligase; structural
           genomics, joint center for structural genomics, JCSG;
           1.50A {Cytophaga hutchinsonii atcc 33406}
          Length = 394

 Score =  259 bits (662), Expect = 9e-70
 Identities = 80/385 (20%), Positives = 137/385 (35%), Gaps = 62/385 (16%)

Query: 10  TYGQAGVNIEAGNRTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVDPILVSSSDG 69
            Y Q GV+ +  +     IKS  K             F  +      G  +   +  +DG
Sbjct: 7   RYMQRGVSSQKEDV-HKAIKSIDKGIYP-------RAFCKIIPDILGGDPEYCNIMHADG 58

Query: 70  VGTKLKIAIETGKN-------DTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQLNPDQA 122
            GTK  +A    K          I  D V M ++D++  GA     L             
Sbjct: 59  AGTKSSLAYVYWKETGDISVWKGIAQDAVIMNIDDLICVGAVDNILLSSTIGR-NKNLIP 117

Query: 123 TSIIKGIAAGCCQA---------GCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELL 173
             ++  I  G  +          G    GGETA++  L      D         +   ++
Sbjct: 118 GEVLAAIINGTEEVLQMLRDNGIGIYSTGGETADVGDLVRTIIVDSTVTCRMKRQD--VI 175

Query: 174 SPENVCAGDLILGLPS-----------SGLHSNGFALVRKIISLSQLSWKDPSP------ 216
           S EN+ AG++I+G  S            G+ SNG    R  +  + L+ K P        
Sbjct: 176 SNENIKAGNVIVGFASYGQTSYETEYNGGMGSNGLTSARHDVFNNVLASKYPESFDPKVP 235

Query: 217 ---------------ISSEHSLGETLLTPTRIYVSPLLKILRK-TGKIKALAHITGGGLT 260
                          ++     G+ +L+PTR Y   + +I+ +  GK+  + H +GGG T
Sbjct: 236 ENLVYSGEMNLTDPYLNVPLDAGKLVLSPTRTYAPLMKEIIHQYKGKLDGVVHCSGGGQT 295

Query: 261 ENIPRAIPAHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTFNCGIGMVIIVHPDNKD 320
           + +        T  I  N  +VP +   +  +++    E+ + FN G  + I     + +
Sbjct: 296 KVLHF--TDATTHIIKDNLFDVPPLFQLIQGQSNTPWEEMYKVFNMGHRLEIYTDAAHAE 353

Query: 321 CIIKKFQENNENIILIGEVTQRSEK 345
            +I   ++ N    +IG V      
Sbjct: 354 GMIAIAKKFNIEAKIIGRVEAPVAG 378


>2rb9_A HYPE protein; hydrogenase maturation, dimer, enzyme, X- RAY
           crystallography, structural genomics, BSGI; 2.00A
           {Escherichia coli O157} PDB: 2i6r_A
          Length = 334

 Score =  114 bits (286), Expect = 3e-26
 Identities = 56/304 (18%), Positives = 107/304 (35%), Gaps = 31/304 (10%)

Query: 44  IGGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGA 103
                   DL +       L  S+D       I         IG   +    ND+   GA
Sbjct: 32  EQEDQARLDLAQLVAEGDRLAFSTDSYV----IDPLFFPGGNIGKLAICGTANDVAVSGA 87

Query: 104 EPLFFLDYLATSQ-LNPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGF 162
            P +        + L  +   +++  +A     AG A++ G+T  +          +   
Sbjct: 88  IPRYLSCGFILEEGLPMETLKAVVTSMAETARTAGIAIVTGDTKVVQR-GAADKLFINTA 146

Query: 163 AVGAVERKELLSPENVCAGDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHS 222
            +GA+        + + AGD++L   + G H      +R+ + L      D         
Sbjct: 147 GMGAIPTNIHWGAQTLTAGDILLVSGTLGDHGATILNLREQLGLDGELVSDC-------- 198

Query: 223 LGETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGLTENIPRAIPA-HLTASINLNSVE 281
                       ++PL++ LR    +KAL   T GG+   +     A      I+ +++ 
Sbjct: 199 ----------AVLTPLIQTLRDIPGVKALRDATRGGVNAVVHEFAAACGCGIEISESALP 248

Query: 282 VPQIISWLSKKAHVKPAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQEN--NENIILIGEV 339
           V   +  + +   +   + L   N G  +VI V  +  + ++     +   ++  LIGEV
Sbjct: 249 VKPAVRGVCELLGL---DALNFANEG-KLVIAVERNAAEQVLAALHSHPLGKDAALIGEV 304

Query: 340 TQRS 343
            +R 
Sbjct: 305 VERK 308


>2z1u_A Hydrogenase expression/formation protein HYPE; alpha-beta fold,
           beta barrel, lyase; HET: ATP; 2.00A {Desulfovibrio
           vulgaris subsp} PDB: 2z1t_A*
          Length = 343

 Score =  104 bits (259), Expect = 4e-23
 Identities = 57/308 (18%), Positives = 103/308 (33%), Gaps = 37/308 (12%)

Query: 52  DLKKAGFVDPILVSSSDG--VGTKLKIAIET---------GKNDTIGIDLVAMCVNDILT 100
           DL    F +PIL + +D   +     +A+ T              IG   V   VND+  
Sbjct: 25  DLFLRHFDNPILGTLNDAARLDLTGPLAMSTDSYTVDPIFFPGGDIGTLAVHGTVNDVSM 84

Query: 101 HGAEPLFFLDYLA-TSQLNPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDL 159
            GA P +          L+ D    ++  +     +AG  ++ G+T  +P         +
Sbjct: 85  LGARPRYLSCGFILEEGLDMDILERVVASMGKAAREAGVFIVTGDTKVVPR-GACDKMFI 143

Query: 160 AGFAVGAVERKELLSPENVCAGDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISS 219
               +G +      S +    GD IL   S G H       R+ +               
Sbjct: 144 NTTGIGEILVDPAPSGDRARPGDAILISGSMGDHGLTILSQRQGL--------------- 188

Query: 220 EHSLGETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGLTENIPR-AIPAHLTASINLN 278
             +    + + +      + K++ + G I  L   T GGL   +   A  +     +   
Sbjct: 189 --NFAADVCSDSASLNRVVEKLVLEVGDIHVLRDPTRGGLATTLNEIAGQSQAVCHVLET 246

Query: 279 SVEVPQIISWLSKKAHVKPAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQEN--NENIILI 336
           +V V + +        + P   L   N G  ++ I+  +  +  +   +E    E+   I
Sbjct: 247 AVPVRESVRNGCSFLGLDP---LYLANEG-KLICILPEERAEAALAVLREGPHGEHAARI 302

Query: 337 GEVTQRSE 344
           G V    E
Sbjct: 303 GSVKSVGE 310


>2z1e_A Hydrogenase expression/formation protein HYPE; [NIFE] hydrogenase
           maturation, ATPase, transferase; 1.55A {Thermococcus
           kodakarensis KOD1} SCOP: d.79.4.1 d.139.1.1 PDB: 2z1f_A
          Length = 338

 Score = 86.2 bits (212), Expect = 9e-18
 Identities = 52/332 (15%), Positives = 107/332 (32%), Gaps = 39/332 (11%)

Query: 28  IKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKNDTIG 87
           I   +      G   +    G           D  +V + DG   K            IG
Sbjct: 24  ILKTLTLKSAGGIGLDALDDGATIPFG-----DKHIVFTIDGHTVKPLFF----PGGDIG 74

Query: 88  IDLVAMCVNDILTHGAEPLFFLDYLATSQLNPDQATS-IIKGIAAGCCQAGCALIGGETA 146
              V+  VND+   GAEP+   + +   +    +    ++K +     +    ++ G+T 
Sbjct: 75  RLAVSGTVNDLAVMGAEPIALANSMIIGEGLDMEVLKRVLKSMDETAREVPVPIVTGDTK 134

Query: 147 EMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDLILGLPSSGLHSNGFALVRKIISL 206
            +         ++     G    +  +S      GD +L   + G H       R+ I+ 
Sbjct: 135 VVE-----DKIEMFVITAGIGIAEHPVSDAGAKVGDAVLVSGTIGDHGIALMSHREGIAF 189

Query: 207 SQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGLTENIPR- 265
                 D +P                  V   +        I A+   T  GL+  +   
Sbjct: 190 ETELKSDVAP---------------IWDVVKAVAETIGWENIHAMKDPTRAGLSNALNEI 234

Query: 266 AIPAHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTFNCGIGMVIIVHPDNKDCIIKK 325
           A  +++   +    + +   +   S+   + P       N G  +V++V  +  +  ++ 
Sbjct: 235 ARKSNVGILVREADIPIRPEVRAASEMLGISP---YDVANEG-KVVMVVAREYAEEALEA 290

Query: 326 FQ--ENNENIILIGEVTQRSEKSPPILYQGSL 355
            +  E   N  +IGEV   ++    +L +  +
Sbjct: 291 MRKTEKGRNAAIIGEVI--ADYRGKVLLETGI 320


>3fd5_A Selenide, water dikinase 1; selenophosphate synthetase, SELD,
           ATP-binding, nucleotide-binding, selenium, transferase;
           HET: AP2; 1.90A {Homo sapiens} PDB: 3fd6_A*
          Length = 394

 Score = 86.2 bits (212), Expect = 1e-17
 Identities = 39/267 (14%), Positives = 77/267 (28%), Gaps = 19/267 (7%)

Query: 91  VAMCVNDILTHGAEPL------FFLDYLATSQLNPDQATSIIKGIAAGCCQAGCALIGGE 144
            A  ++D+   G            +    T +        II+G      +AG ++ GG+
Sbjct: 106 CANVLSDLYAMGVTECDNMLMLLGVSNKMTDRERDKVMPLIIQGFKDAAEEAGTSVTGGQ 165

Query: 145 TAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDLILGLPSSGLHSNGFALVRKII 204
           T   P +       L G A    +  E + P+N   GD+++     G            I
Sbjct: 166 TVLNPWIV------LGGVATTVCQPNEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQWLDI 219

Query: 205 SLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGLTENIP 264
                  K            +  +            ++       A      G L     
Sbjct: 220 PEKWNKIKLVVTQEDVELAYQEAMMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQN 279

Query: 265 RAIPAHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTF--NCGIGMVIIVHPDNKDCI 322
            A       S  ++++ V   ++ +SK        +  T     G G++I +  +     
Sbjct: 280 LAKQQRNEVSFVIHNLPVLAKMAAVSKACGNMFGLMHGTCPETSG-GLLICLPREQAARF 338

Query: 323 IKKFQEN----NENIILIGEVTQRSEK 345
             + +           +IG V + +  
Sbjct: 339 CAEIKSPKYGEGHQAWIIGIVEKGNRT 365


>3mcq_A Thiamine-monophosphate kinase; structural genomics, joint center
           for structural genomics, J protein structure initiative,
           PSI-2; HET: MSE PGE PG4 1PE; 1.91A {Methylobacillus
           flagellatus}
          Length = 319

 Score = 76.5 bits (187), Expect = 1e-14
 Identities = 40/261 (15%), Positives = 89/261 (34%), Gaps = 22/261 (8%)

Query: 84  DTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQLNPDQATSIIKGIAAGCCQAGCALIGG 143
             IG   +A+ ++D+   GA+P +    +A  + + D  +    G  A   Q   ALIGG
Sbjct: 59  WLIGWKSLAVNISDMAAMGAQPRWATLTIALPEADEDWISKFAAGFFACAAQFDIALIGG 118

Query: 144 ETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDLILGLPSSGLHSNGFALVRKI 203
           +T   P         ++   +G       L      A D I      G  +   A ++  
Sbjct: 119 DTTRGP-------LTISVQIMGETPPGASLLRSTARADDDIWVSGPLGDAALALAAIQGR 171

Query: 204 ISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGLTENI 263
             LS            +                 ++      G   +   I+ G L +  
Sbjct: 172 YPLSDTELAACGKALHQPQP-------------RVVLGQALRGLAHSALDISDGLLADLG 218

Query: 264 PRAIPAHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTFNCGIGMVIIVHPDNKDCII 323
                + + A + L ++   +++S  S++  ++    + +      +       ++  I 
Sbjct: 219 HILEHSQVGAEVWLKAIPKSEVVSAHSQEVAIQKM--ILSGGDDYELCFTASTQHRQQIA 276

Query: 324 KKFQENNENIILIGEVTQRSE 344
              ++ + ++ +IG +T   +
Sbjct: 277 DIGRQLSLDMAVIGRITDTQQ 297


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 61.1 bits (148), Expect = 3e-10
 Identities = 62/363 (17%), Positives = 109/363 (30%), Gaps = 151/363 (41%)

Query: 4   ERKRGL-TYGQAGVNIEAGNRTVTQI------KSAVKSTKRAGTIGEIGGFGG------- 49
           + K  +  Y  A        R   +       ++  +   +   I     FGG       
Sbjct: 118 KTKELIKNYITA---RIMAKRPFDKKSNSALFRAVGEGNAQLVAI-----FGGQGNTDDY 169

Query: 50  ------LFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGA 103
                 L+       V  ++  S++ +   ++  ++  K  T G++++       L    
Sbjct: 170 FEELRDLYQTYH-VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW-----L-ENP 222

Query: 104 EPLFFLDYLATSQLNPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFA 163
                 DYL +         S             C LI        G+       LA + 
Sbjct: 223 SNTPDKDYLLSI------PIS-------------CPLI--------GV-----IQLAHYV 250

Query: 164 VGAVERKEL-LSPENVCAGDL---ILGLPSSGLHSNG----------------FALVRKI 203
           V A   K L  +P     G+L   + G  ++G HS G                F  VRK 
Sbjct: 251 VTA---KLLGFTP-----GELRSYLKG--ATG-HSQGLVTAVAIAETDSWESFFVSVRKA 299

Query: 204 ISL-------SQLSWK----DPSPI--SSEHSLGETLLTPTRIYVSPLLKI--LRKTGKI 248
           I++          ++      PS +  S E+   E    P     SP+L I  L +    
Sbjct: 300 ITVLFFIGVRCYEAYPNTSLPPSILEDSLEN--NEG--VP-----SPMLSISNLTQ---- 346

Query: 249 KAL-AHI--TGGGLTENIPRAIPAHLTASINL-NSVEVPQ--IISWLSKKAHVKPAEVLR 302
           + +  ++  T   L           +   I+L N     +  ++S         P + L 
Sbjct: 347 EQVQDYVNKTNSHLPAG------KQV--EISLVNG---AKNLVVS--------GPPQSLY 387

Query: 303 TFN 305
             N
Sbjct: 388 GLN 390



 Score = 34.1 bits (78), Expect = 0.044
 Identities = 28/163 (17%), Positives = 50/163 (30%), Gaps = 49/163 (30%)

Query: 216 PISSEH-SLGETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGLTENIPRAIPAHLTAS 274
           P++  H SL   LL PT  +   +   L++    K L   T  G   +     PA L   
Sbjct: 8   PLTLSHGSLEHVLLVPTASF--FIASQLQEQ-FNKILPEPT-EGFAADDEPTTPAELVGK 63

Query: 275 INLNSVEVPQIISWLSKKAHVKPA----EVL--------RTFNCGIGMVIIVH------- 315
                      + ++S            +VL          +  G      +H       
Sbjct: 64  ----------FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND----IHALAAKLL 109

Query: 316 PDNKDCIIKKFQENNENIILI----GEVTQR--SEKSPPILYQ 352
            +N   ++K        +I        + +R   +KS   L++
Sbjct: 110 QENDTTLVKTK-----ELIKNYITARIMAKRPFDKKSNSALFR 147


>2yxz_A Thiamin-monophosphate kinase; alpha/beta structure, transferase;
           1.90A {Thermus thermophilus HB8}
          Length = 311

 Score = 51.6 bits (122), Expect = 3e-07
 Identities = 42/319 (13%), Positives = 85/319 (26%), Gaps = 39/319 (12%)

Query: 28  IKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVDPILVSSSDGVGTKLKIAIETGKNDTIG 87
           +                G   G    +        L+ +   +  ++ +         +G
Sbjct: 12  LARLAPLGYPPEAPLPPGDDAGGVWAEG----RAWLLKTDGFLYREVALKGMGPFE--VG 65

Query: 88  IDLVAMCVNDILTHGAEPLFFLD-YLATSQLNPDQATSIIKGIAAGCCQAGCALIGGETA 146
              VA   +D+L     PL F         L       +++G A    + G  L+GG+T 
Sbjct: 66  FRGVAATASDLLAKMGRPLGFTLGLFLPEDLEEGFVLELVRGAAEAAKRLGAFLLGGDTN 125

Query: 147 EMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDLILGLPSSGLHSNGFALVRKIISL 206
               +             G    +  L  + +    L L     G          +  SL
Sbjct: 126 RGVEVAL--------TVSGYALAEAPLPRKALPGDLLYLAGDRWGRTGAAIRAHYEGRSL 177

Query: 207 SQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGLTENIPRA 266
                             E    P      P L++L  +G +   +  +  GL E + + 
Sbjct: 178 EGFPKIR-----------EAAFYPL-----PRLELLALSG-LLRGSLDSSDGLAETLWQL 220

Query: 267 IPAHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTFNCG--IGMVIIVHPDNKDCIIK 324
               +   +         +   +   A  + A +      G     V++V  +    +  
Sbjct: 221 ADLGVGVEVEA-----LPLYPDVLAFAGSEEAALELVLYGGEEFEAVLVVPQEGAAAVEA 275

Query: 325 KFQENNENIILIGEVTQRS 343
           + +     +   G V    
Sbjct: 276 RAKAKGLPLFRAGRVVAGE 294


>1vk3_A Phosphoribosylformylglycinamidine synthase II; TM1246, structural
           genomics, JCSG, PSI, protein structure initiative; 2.15A
           {Thermotoga maritima} SCOP: d.79.4.1 d.79.4.1 d.139.1.1
           d.139.1.1 PDB: 3d54_A* 2hs3_A* 2hs0_A* 2hs4_A* 2hru_A*
           2hry_A*
          Length = 615

 Score = 49.8 bits (118), Expect = 9e-07
 Identities = 37/246 (15%), Positives = 78/246 (31%), Gaps = 24/246 (9%)

Query: 95  VNDILTHGAEPLFFLDYLATSQLNPDQATSIIKGIAAGCCQAGCALIGGETAEMPGLYHD 154
           + D+L  GA P    D L  S++       II+GIA      G   +GGE   +  LY  
Sbjct: 104 IRDVLAMGARPTAIFDSLHMSRI----IDGIIEGIADYGNSIGVPTVGGEL-RISSLYAH 158

Query: 155 RDYDLAGFAVGAVERKELLSPENVCAGDLI-LGLPSSGLHSNGFALVRKIISLSQLSWKD 213
                   A G V    L+  +    G +I +   ++G      A      +   L+   
Sbjct: 159 NPLVNVL-AAGVVRNDMLVDSKASRPGQVIVIFGGATGRDGIHGASF----ASEDLTGDK 213

Query: 214 PSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGLTENIPRAIPAHLTA 273
            + +S +             +       + + G ++    +  GG+       +      
Sbjct: 214 ATKLSIQVGDPFAEKMLIEAF-----LEMVEEGLVEGAQDLGAGGVLSATSELVAK---- 264

Query: 274 SINLNSVEVPQIISWLSKKAHVKPAEVLRTFNCGIGMVIIVHPDNKDCIIKKFQENNENI 333
                ++     +  +  +        +        M ++  P     I++  +++    
Sbjct: 265 ----GNLGAIVHLDRVPLREPDMEPWEILISESQERMAVVTSPQKASRILEIARKHLLFG 320

Query: 334 ILIGEV 339
            ++ EV
Sbjct: 321 DVVAEV 326


>2yyd_A Selenide, water dikinase; FULL-length selenophosphate synthetase,
           structural genomics, NPPSFA; 1.98A {Aquifex aeolicus}
           PDB: 2yye_A* 2zod_A 2zau_A
          Length = 345

 Score = 47.7 bits (112), Expect = 4e-06
 Identities = 30/266 (11%), Positives = 75/266 (28%), Gaps = 22/266 (8%)

Query: 91  VAMCVNDILTHGAEPLFFLDYLATSQ--LNPDQATSIIKGIAAGCCQAGCALIGGETAEM 148
            A  ++D+   G  P+  L     +   L+ +    +I+G      +A   L+GG T + 
Sbjct: 86  TANALSDVYAMGGIPVNALAISCFNNCELDIEIFREVIRGALDKLREAKTVLLGGHTIDD 145

Query: 149 PGLYHDRDYDLAGFAVGAVERKELLSPENVCAGDLILGLPSSGLHSNGFALVRKIISLSQ 208
                           G     + ++      G L++             L++ +     
Sbjct: 146 KEPKFGL------SVAGICPEGKYITQSGAQVGQLLI----LTKPIGTGILIKGLKEGIL 195

Query: 209 LSWKDPSPISSEHSLGETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGL------TEN 262
                   I +  +L +          +     +   G +    +I            E 
Sbjct: 196 KEEDINEAIENMLALNDKARNLMLSLDATACTDVTGFGLLGHAWNICKNSNIGARIFFEK 255

Query: 263 IPRAIPAHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTFNCGI----GMVIIVHPDN 318
           +P    +       +      + ++++                       G++  ++ + 
Sbjct: 256 VPYYQLSENLVKKKIYPKGAIENLNFVKNYLKSNLDNWKLILLSDPVTSGGLLFTINKEK 315

Query: 319 KDCIIKKFQENNENIILIGEVTQRSE 344
            + I +  +E   N  +IGE    + 
Sbjct: 316 LEKIDETAKELEVNYWIIGETIAENV 341


>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM,
           subunit arrangement, acetylation, ATP-binding,
           chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
           taurus}
          Length = 512

 Score = 29.7 bits (66), Expect = 1.0
 Identities = 8/51 (15%), Positives = 21/51 (41%), Gaps = 3/51 (5%)

Query: 14  AGVNIEAGNRTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVDPILV 64
           +GV     N  ++++ +  +   +   +        + D+ +AG +D  L 
Sbjct: 440 SGVK---ANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGVLDTYLG 487


>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides,
           nucleotides, nucleotide and nucleoside interconversions,
           spine, structural genomics; 1.80A {Bacillus anthracis}
           PDB: 2a1y_A*
          Length = 336

 Score = 28.2 bits (62), Expect = 3.3
 Identities = 9/74 (12%), Positives = 22/74 (29%), Gaps = 1/74 (1%)

Query: 61  PILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQLNPD 120
           P++ ++   +    +IA    +N+   I         I          L    +  +  D
Sbjct: 48  PVVPANMQTIID-ERIATYLAENNYFYIMHRFQPEKRISFIRDMQSRGLIASISVGVKED 106

Query: 121 QATSIIKGIAAGCC 134
           +   + +  A    
Sbjct: 107 EYEFVQQLAAEHLT 120


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
            acid synthase, acyl-carrier-protein, beta-ketoacyl
            reductase, beta-ketoacyl synthase, dehydratase; 4.00A
            {Saccharomyces cerevisiae}
          Length = 1688

 Score = 27.9 bits (61), Expect = 4.1
 Identities = 34/137 (24%), Positives = 55/137 (40%), Gaps = 29/137 (21%)

Query: 236  SPLLKILRK--TGKIK--ALAHITGGGLTENIPRAIPAHLTASINLNSVEVPQIISWLSK 291
            +P++ + +K  TG  K  A A +  G L       IP       N N+  V +I+     
Sbjct: 1371 NPVIGVFQKFLTGHPKGAAGAWMMNGALQILNSGIIPG------NRNADNVDKILEQFEY 1424

Query: 292  KAHVKPAEVLRT----------FNCGI--GMVIIVHPDNKDCIIKKFQENNENIILIGEV 339
              +  P++ L+T          F  G   G  I+VHPD     I + + N      + +V
Sbjct: 1425 VLY--PSKTLKTDGVRAVSITSFGFGQKGGQAIVVHPDYLYGAITEDRYNE----YVAKV 1478

Query: 340  TQRSEKSPPILYQGSLI 356
            + R EKS    +   +I
Sbjct: 1479 SAR-EKSAYKFFHNGMI 1494


>1iyk_A Myristoyl-COA:protein N-myristoyltransferase; HET: MYA MIM; 2.30A
           {Candida albicans} SCOP: d.108.1.2 d.108.1.2 PDB:
           1iyl_A* 1nmt_A
          Length = 392

 Score = 26.7 bits (59), Expect = 8.8
 Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 5/49 (10%)

Query: 296 KPAEV-LRTFNCGIGMVIIVHPDNKDCIIKKFQENNENIILIGEVTQRS 343
            P    L   N  I  V I    N  CI KK +      +LI E+T+R 
Sbjct: 97  TPVTFKLNKSNKVIDSVEI----NFLCIHKKLRNKRLAPVLIKEITRRV 141


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.318    0.137    0.398 

Gapped
Lambda     K      H
   0.267   0.0518    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,023,737
Number of extensions: 140464
Number of successful extensions: 407
Number of sequences better than 10.0: 1
Number of HSP's gapped: 374
Number of HSP's successfully gapped: 24
Length of query: 357
Length of database: 5,693,230
Length adjustment: 93
Effective length of query: 264
Effective length of database: 3,438,538
Effective search space: 907774032
Effective search space used: 907774032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.2 bits)