BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780569|ref|YP_003064982.1| phosphoribosylaminoimidazole synthetase [Candidatus Liberibacter asiaticus str. psy62] (357 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780569|ref|YP_003064982.1| phosphoribosylaminoimidazole synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 357 Score = 725 bits (1872), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/357 (100%), Positives = 357/357 (100%) Query: 1 MNHERKRGLTYGQAGVNIEAGNRTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVD 60 MNHERKRGLTYGQAGVNIEAGNRTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVD Sbjct: 1 MNHERKRGLTYGQAGVNIEAGNRTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVD 60 Query: 61 PILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQLNPD 120 PILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQLNPD Sbjct: 61 PILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQLNPD 120 Query: 121 QATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCA 180 QATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCA Sbjct: 121 QATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCA 180 Query: 181 GDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLK 240 GDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLK Sbjct: 181 GDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLK 240 Query: 241 ILRKTGKIKALAHITGGGLTENIPRAIPAHLTASINLNSVEVPQIISWLSKKAHVKPAEV 300 ILRKTGKIKALAHITGGGLTENIPRAIPAHLTASINLNSVEVPQIISWLSKKAHVKPAEV Sbjct: 241 ILRKTGKIKALAHITGGGLTENIPRAIPAHLTASINLNSVEVPQIISWLSKKAHVKPAEV 300 Query: 301 LRTFNCGIGMVIIVHPDNKDCIIKKFQENNENIILIGEVTQRSEKSPPILYQGSLIL 357 LRTFNCGIGMVIIVHPDNKDCIIKKFQENNENIILIGEVTQRSEKSPPILYQGSLIL Sbjct: 301 LRTFNCGIGMVIIVHPDNKDCIIKKFQENNENIILIGEVTQRSEKSPPILYQGSLIL 357 >gi|254780921|ref|YP_003065334.1| dTDP-4-dehydrorhamnose reductase [Candidatus Liberibacter asiaticus str. psy62] Length = 290 Score = 30.4 bits (67), Expect = 0.050, Method: Compositional matrix adjust. Identities = 30/140 (21%), Positives = 51/140 (36%), Gaps = 19/140 (13%) Query: 81 GKNDTIGIDLVAMCVNDI------------LTHGAEPLFFLDYLATSQLNPDQATSIIKG 128 G N I L +MCV D+ L FFL + +NP T++ K Sbjct: 7 GNNGQIAQSLSSMCVQDVEIIRVGRPDIDLLKPKDFASFFLSFSPDVIINPAAYTAVDKA 66 Query: 129 -----IAAGCCQAGCALI--GGETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAG 181 IA G I ++ +P +Y DY G + ++ +P N+ Sbjct: 67 EDEPEIAFSINAEGAGAIAKAADSIGIPCIYISTDYVFDGLSRTPIDEFSPTNPLNIYGK 126 Query: 182 DLILGLPSSGLHSNGFALVR 201 + G ++N + ++R Sbjct: 127 SKLAGEEKVASYTNNYVILR 146 >gi|254780650|ref|YP_003065063.1| hypothetical protein CLIBASIA_02685 [Candidatus Liberibacter asiaticus str. psy62] Length = 170 Score = 26.9 bits (58), Expect = 0.46, Method: Compositional matrix adjust. Identities = 12/34 (35%), Positives = 20/34 (58%) Query: 256 GGGLTENIPRAIPAHLTASINLNSVEVPQIISWL 289 G L++ +PRAI T+ L + + Q++SWL Sbjct: 43 GHLLSKTLPRAISKLYTSESVLLTTRLMQMVSWL 76 >gi|254780823|ref|YP_003065236.1| double-strand break repair protein AddB [Candidatus Liberibacter asiaticus str. psy62] Length = 1040 Score = 24.6 bits (52), Expect = 2.5, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 15/61 (24%) Query: 1 MNHERKRGLTYGQAGVNIEAGNRTVTQIKSAVKSTKRAGTIG-EIGGFGGLFDLKKAGFV 59 + HE K + + VNI A K A++S IG + GF DL K+GFV Sbjct: 868 LEHEEKIQSSIEKIFVNIPA--------KMAIES------IGIHLTGFADRIDLLKSGFV 913 Query: 60 D 60 D Sbjct: 914 D 914 >gi|254780970|ref|YP_003065383.1| phosphoribosylformylglycinamidine synthase II [Candidatus Liberibacter asiaticus str. psy62] Length = 737 Score = 24.6 bits (52), Expect = 2.8, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 14/113 (12%) Query: 91 VAMCVNDILTHGAEPLFFLDYLATSQLNPD------QATSIIKGIAAGCCQAGCALIGGE 144 VA C +I+ GA+PL D L NP+ Q +KGI C ++ G Sbjct: 473 VAECWRNIIATGAKPLAITDNLNFG--NPEKEEIMGQFVHSVKGIREACQILDFPIVSGN 530 Query: 145 TA---EMPGLYHDRDYDLAGFAVGAVERKELLSP-ENVCAGDLILGLPSSGLH 193 + E G +AG VG + L++ ++ GDLIL + + G H Sbjct: 531 VSFYNETNGQSIFPTPTIAG--VGILPDYSLMTRIDSAHEGDLILMIGNDGCH 581 >gi|254781102|ref|YP_003065515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Liberibacter asiaticus str. psy62] Length = 497 Score = 24.6 bits (52), Expect = 2.9, Method: Compositional matrix adjust. Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 8/90 (8%) Query: 175 PENVCAGDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGE--TLLTPTR 232 PEN IL + + S+ + V++I S LS P S+ S + L TP+ Sbjct: 114 PEN------ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167 Query: 233 IYVSPLLKILRKTGKIKALAHITGGGLTEN 262 IY++ L L G + GL ++ Sbjct: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 >gi|254781115|ref|YP_003065528.1| poly(A) polymerase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 416 Score = 24.3 bits (51), Expect = 3.5, Method: Compositional matrix adjust. Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 25/120 (20%) Query: 224 GETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGLTENI------------PRAIPAHL 271 G +L+ RI+ S + K+L + A+ H+ GG+ + I + I A Sbjct: 196 GLKILSSERIW-SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254 Query: 272 TASINLNS-VEVPQIISWLSKKAHVKPAE-----------VLRTFNCGIGMVIIVHPDNK 319 ++S + +ISW KK+ + A+ ++ FNC + P+ K Sbjct: 255 VFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIK 314 >gi|254780340|ref|YP_003064753.1| proline/glycine betaine ABC transporter, ATP-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 348 Score = 22.7 bits (47), Expect = 9.3, Method: Compositional matrix adjust. Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 2/25 (8%) Query: 302 RTFNCGIGMVIIVHPDNKDCIIKKF 326 R CG II+HP N C + +F Sbjct: 247 RIIQCGTPQEIILHPAN--CYVSEF 269 >gi|254780879|ref|YP_003065292.1| hypothetical protein CLIBASIA_03880 [Candidatus Liberibacter asiaticus str. psy62] Length = 652 Score = 22.7 bits (47), Expect = 9.9, Method: Compositional matrix adjust. Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 14/48 (29%) Query: 257 GGLTENIPRAIPAHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTF 304 G+ N+ + I L +S+NL + H+KP + L TF Sbjct: 397 NGMNSNLVKLIMRTLASSVNL--------------QEHLKPTDFLETF 430 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.318 0.137 0.398 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 228,639 Number of Sequences: 1233 Number of extensions: 9585 Number of successful extensions: 32 Number of sequences better than 100.0: 10 Number of HSP's better than 100.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 29 Number of HSP's gapped (non-prelim): 11 length of query: 357 length of database: 328,796 effective HSP length: 75 effective length of query: 282 effective length of database: 236,321 effective search space: 66642522 effective search space used: 66642522 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 39 (19.6 bits)