BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780569|ref|YP_003064982.1| phosphoribosylaminoimidazole
synthetase [Candidatus Liberibacter asiaticus str. psy62]
(357 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780569|ref|YP_003064982.1| phosphoribosylaminoimidazole synthetase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 357
Score = 725 bits (1872), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/357 (100%), Positives = 357/357 (100%)
Query: 1 MNHERKRGLTYGQAGVNIEAGNRTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVD 60
MNHERKRGLTYGQAGVNIEAGNRTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVD
Sbjct: 1 MNHERKRGLTYGQAGVNIEAGNRTVTQIKSAVKSTKRAGTIGEIGGFGGLFDLKKAGFVD 60
Query: 61 PILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQLNPD 120
PILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQLNPD
Sbjct: 61 PILVSSSDGVGTKLKIAIETGKNDTIGIDLVAMCVNDILTHGAEPLFFLDYLATSQLNPD 120
Query: 121 QATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCA 180
QATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCA
Sbjct: 121 QATSIIKGIAAGCCQAGCALIGGETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCA 180
Query: 181 GDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLK 240
GDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLK
Sbjct: 181 GDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGETLLTPTRIYVSPLLK 240
Query: 241 ILRKTGKIKALAHITGGGLTENIPRAIPAHLTASINLNSVEVPQIISWLSKKAHVKPAEV 300
ILRKTGKIKALAHITGGGLTENIPRAIPAHLTASINLNSVEVPQIISWLSKKAHVKPAEV
Sbjct: 241 ILRKTGKIKALAHITGGGLTENIPRAIPAHLTASINLNSVEVPQIISWLSKKAHVKPAEV 300
Query: 301 LRTFNCGIGMVIIVHPDNKDCIIKKFQENNENIILIGEVTQRSEKSPPILYQGSLIL 357
LRTFNCGIGMVIIVHPDNKDCIIKKFQENNENIILIGEVTQRSEKSPPILYQGSLIL
Sbjct: 301 LRTFNCGIGMVIIVHPDNKDCIIKKFQENNENIILIGEVTQRSEKSPPILYQGSLIL 357
>gi|254780921|ref|YP_003065334.1| dTDP-4-dehydrorhamnose reductase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 290
Score = 30.4 bits (67), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 51/140 (36%), Gaps = 19/140 (13%)
Query: 81 GKNDTIGIDLVAMCVNDI------------LTHGAEPLFFLDYLATSQLNPDQATSIIKG 128
G N I L +MCV D+ L FFL + +NP T++ K
Sbjct: 7 GNNGQIAQSLSSMCVQDVEIIRVGRPDIDLLKPKDFASFFLSFSPDVIINPAAYTAVDKA 66
Query: 129 -----IAAGCCQAGCALI--GGETAEMPGLYHDRDYDLAGFAVGAVERKELLSPENVCAG 181
IA G I ++ +P +Y DY G + ++ +P N+
Sbjct: 67 EDEPEIAFSINAEGAGAIAKAADSIGIPCIYISTDYVFDGLSRTPIDEFSPTNPLNIYGK 126
Query: 182 DLILGLPSSGLHSNGFALVR 201
+ G ++N + ++R
Sbjct: 127 SKLAGEEKVASYTNNYVILR 146
>gi|254780650|ref|YP_003065063.1| hypothetical protein CLIBASIA_02685 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 170
Score = 26.9 bits (58), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 256 GGGLTENIPRAIPAHLTASINLNSVEVPQIISWL 289
G L++ +PRAI T+ L + + Q++SWL
Sbjct: 43 GHLLSKTLPRAISKLYTSESVLLTTRLMQMVSWL 76
>gi|254780823|ref|YP_003065236.1| double-strand break repair protein AddB [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1040
Score = 24.6 bits (52), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 15/61 (24%)
Query: 1 MNHERKRGLTYGQAGVNIEAGNRTVTQIKSAVKSTKRAGTIG-EIGGFGGLFDLKKAGFV 59
+ HE K + + VNI A K A++S IG + GF DL K+GFV
Sbjct: 868 LEHEEKIQSSIEKIFVNIPA--------KMAIES------IGIHLTGFADRIDLLKSGFV 913
Query: 60 D 60
D
Sbjct: 914 D 914
>gi|254780970|ref|YP_003065383.1| phosphoribosylformylglycinamidine synthase II [Candidatus
Liberibacter asiaticus str. psy62]
Length = 737
Score = 24.6 bits (52), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 14/113 (12%)
Query: 91 VAMCVNDILTHGAEPLFFLDYLATSQLNPD------QATSIIKGIAAGCCQAGCALIGGE 144
VA C +I+ GA+PL D L NP+ Q +KGI C ++ G
Sbjct: 473 VAECWRNIIATGAKPLAITDNLNFG--NPEKEEIMGQFVHSVKGIREACQILDFPIVSGN 530
Query: 145 TA---EMPGLYHDRDYDLAGFAVGAVERKELLSP-ENVCAGDLILGLPSSGLH 193
+ E G +AG VG + L++ ++ GDLIL + + G H
Sbjct: 531 VSFYNETNGQSIFPTPTIAG--VGILPDYSLMTRIDSAHEGDLILMIGNDGCH 581
>gi|254781102|ref|YP_003065515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Candidatus Liberibacter asiaticus str. psy62]
Length = 497
Score = 24.6 bits (52), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
Query: 175 PENVCAGDLILGLPSSGLHSNGFALVRKIISLSQLSWKDPSPISSEHSLGE--TLLTPTR 232
PEN IL + + S+ + V++I S LS P S+ S + L TP+
Sbjct: 114 PEN------ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
Query: 233 IYVSPLLKILRKTGKIKALAHITGGGLTEN 262
IY++ L L G + GL ++
Sbjct: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
>gi|254781115|ref|YP_003065528.1| poly(A) polymerase protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 416
Score = 24.3 bits (51), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 25/120 (20%)
Query: 224 GETLLTPTRIYVSPLLKILRKTGKIKALAHITGGGLTENI------------PRAIPAHL 271
G +L+ RI+ S + K+L + A+ H+ GG+ + I + I A
Sbjct: 196 GLKILSSERIW-SEINKLLEAKNPLNAIVHMYNGGIFKEIFLDVQEISLDQLSQVIEAEQ 254
Query: 272 TASINLNS-VEVPQIISWLSKKAHVKPAE-----------VLRTFNCGIGMVIIVHPDNK 319
++S + +ISW KK+ + A+ ++ FNC + P+ K
Sbjct: 255 VFEWKIDSLLRFIVLISWQDKKSILSMAKKFSLPREIRYFLISFFNCNFNQKTLSIPEIK 314
>gi|254780340|ref|YP_003064753.1| proline/glycine betaine ABC transporter, ATP-binding protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 348
Score = 22.7 bits (47), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 302 RTFNCGIGMVIIVHPDNKDCIIKKF 326
R CG II+HP N C + +F
Sbjct: 247 RIIQCGTPQEIILHPAN--CYVSEF 269
>gi|254780879|ref|YP_003065292.1| hypothetical protein CLIBASIA_03880 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 652
Score = 22.7 bits (47), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 14/48 (29%)
Query: 257 GGLTENIPRAIPAHLTASINLNSVEVPQIISWLSKKAHVKPAEVLRTF 304
G+ N+ + I L +S+NL + H+KP + L TF
Sbjct: 397 NGMNSNLVKLIMRTLASSVNL--------------QEHLKPTDFLETF 430
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.318 0.137 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 228,639
Number of Sequences: 1233
Number of extensions: 9585
Number of successful extensions: 32
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 11
length of query: 357
length of database: 328,796
effective HSP length: 75
effective length of query: 282
effective length of database: 236,321
effective search space: 66642522
effective search space used: 66642522
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 39 (19.6 bits)