HHsearch alignment for GI: 254780570 and conserved domain: TIGR00460
>TIGR00460 fmt methionyl-tRNA formyltransferase; InterPro: IPR005794 Methionyl-tRNA formyltransferase (2.1.2.9 from EC) transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. The top-scoring characterised proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. ; GO: 0004479 methionyl-tRNA formyltransferase activity, 0006412 translation.
Probab=99.97 E-value=3.3e-31 Score=235.86 Aligned_cols=187 Identities=26% Similarity=0.404 Sum_probs=144.2
Q ss_pred CEEEEEECCCCH--HHHHHHHHHHCCC-CC-CEEEEEEEC---C---CCCH-------------HHHHHHH----CCCCE
Q ss_conf 659999769850--1899999997399-98-479999976---8---8887-------------8889986----08950
Q gi|254780570|r 4 KNIVIFISGEGT--NMLSLIQATKKND-YP-AEIVGVFSD---N---SNAQ-------------GLVKARK----EKVPT 56 (205)
Q Consensus 4 ~riavl~SG~Gs--nl~~Il~~~~~~~-~~-~eI~~Visn---~---~da~-------------~l~~a~~----~~Ip~ 56 (205)
T Consensus 1 ~~i~F~Gtp~f~nfs~~~l~~l~~~~~sCGi~~v~~VvT~qfaretlpd~~~gR~kke~l~~~~~k~~A~~sP~~~gipv 80 (385)
T TIGR00460 1 LRILFFGTPTFSNFSLPVLEELREDNDSCGIFEVVGVVTQQFARETLPDKPAGRGKKEILTPPPVKVLALKSPLQKGIPV 80 (385)
T ss_pred CEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCHHHHHCCCCCHHHCCCCEECCCCCHHHHHCCCCCCCCCEE
T ss_conf 95899627606665599899997568961278888862121333137630343376300167733543014778887704
Q ss_pred EEEECCCCCCCCCHHHHHHHHCCCCCC---------EEEEEEEEEEECCCHHHHCCCCCEEECCCCCCCCCCCCCCCCCH
Q ss_conf 463013233221012432100012343---------03643112220572132106654231353223332444212100
Q gi|254780570|r 57 FPIPYKDYISRREHEKAILMQLSSIQP---------DLICLAGYMRLLSRDFVESYKNKILNIHPSLLPLFPGLHTHRRV 127 (205)
Q Consensus 57 ~~i~~~~~~~~~~~~~~l~~~l~~~~~---------Dliv~~g~~~il~~~~l~~~~~~~iN~HpslLP~yrG~~~~~~a 127 (205)
T Consensus 81 ~qp--~~--~~~~-~~~~~~~v~~L~pendGsGaPfD~~vvvsfG~iL~~~~ld~~p~g~iNVHpSlLP~~RG~APIq~~ 155 (385)
T TIGR00460 81 LQP--EK--QRLL-ALEELPLVEELKPENDGSGAPFDVIVVVSFGKILPKELLDLFPYGCINVHPSLLPRYRGGAPIQRA 155 (385)
T ss_pred ECC--CC--CCCH-HHHHHHHHHCCCCCCCCCCCCCCEEEEEEHHHCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHH
T ss_conf 065--00--0201-234330455068766788885212444513011248998607997476570104233667658999
Q ss_pred HCCCCCCCCCCEEEECCC-CCCCCEEEE-EEEECCCCC------------C-------HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 002465344530331232-186626778-998718998------------9-------9999999999999999999999
Q gi|254780570|r 128 LQSGIKITGCTVHMVTAN-MDEGPIIAQ-AAVPVSSQD------------T-------ESSLSQKVLSAEHLLYPLALKY 186 (205)
Q Consensus 128 i~~g~~~~G~TiH~v~~~-~D~G~Ii~q-~~~~i~~~d------------~-------~~~l~~rv~~~E~~l~~~~i~~ 186 (205)
T Consensus 156 il~Gd~~tGvTIm~~~~~R~D~G~Il~qt~~~~i~~~~skGrvndstadfnseGlPrr~~~L~~~L~~lGa~lL~~tl~~ 235 (385)
T TIGR00460 156 ILNGDKKTGVTIMQMVEKRMDAGDILKQTEEVPIEEEDSKGRVNDSTADFNSEGLPRRSGTLSDKLSELGASLLIETLKE 235 (385)
T ss_pred HHCCCCCCCCEEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 86675021317899624337864067614243456533477524441232667764025889999987260468889887
Q ss_pred -HHCCCEEEE
Q ss_conf -986956998
Q gi|254780570|r 187 -TILGKTSNS 195 (205)
Q Consensus 187 -~~~g~i~~~ 195 (205)
T Consensus 236 r~~~g~~~p~ 245 (385)
T TIGR00460 236 RLLEGKNKPE 245 (385)
T ss_pred HHHCCCCCCC
T ss_conf 7513346861